LOCUS       DPUP01000001            8209 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_24013,
            whole genome shotgun sequence.
ACCESSION   DPUP01000001 DPUP01000000
VERSION     DPUP01000001.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8209)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8209)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8209
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..209)
                     /locus_tag="DHV98_00005"
     CDS             complement(<1..209)
                     /locus_tag="DHV98_00005"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010252349.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HCK04795.1"
                     /translation="MTTAYIVKAYRTAVGKAPKGLFRFKRPDELAAETIAYLMSQVPQ
                     LDKNRIDDVMVGNAIPEAEQGLNMAR"
     gene            complement(273..2712)
                     /locus_tag="DHV98_00010"
                     /pseudo
     CDS             complement(273..2712)
                     /locus_tag="DHV98_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019668703.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
     assembly_gap    1029..1083
                     /estimated_length=55
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2714..3163)
                     /locus_tag="DHV98_00015"
     CDS             complement(2714..3163)
                     /locus_tag="DHV98_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCK04796.1"
                     /translation="MKHKTIDHILRSVWMAVSKMYQEEALKLDSTMATGFTLISIDPE
                     QGSPSTALGPKMGMEATSLSRILKSMEERGLIMRKPHPEDGRSVLICLTEFGQEMREY
                     SKDIVLGFDQMVRQKISEADLKIFSKVAESIMDLAQNNNSFSRNKTV"
     gene            complement(3245..5020)
                     /locus_tag="DHV98_00020"
     CDS             complement(3245..5020)
                     /locus_tag="DHV98_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HCK04797.1"
                     /translation="MIQPTRLFDFAYYQKERYNLTTAFADKRNGSWISVSSEEFLDQG
                     NAISRGLLRLGINSNDKIALISTTNRSEWNICDFGALQIGAQDVPIYPTSSKEDYQYI
                     LHHSESVICFVSCADVYAKIAQIKDQVPSLKHVYSFDQLSDCAHWSEVLELGADQSNQ
                     QEVDARKNEVQEDDLATIIYTSGTTGKPKGVMLSHQNISANIRRSADRLPIEMGKSKA
                     LSFLPICHIYERMLSYMYQYCGVEVYFAESLETISENLQEIHPDVMTAVPRLLEKVYD
                     KIYAKGAALTGIKKALFFWAVNLGLVYEPYGQNGWWYEFQLKIARALIFKKWQEALGG
                     KLRAVASGSAALQPRLARVFNAAGIPIMEGYGLTETSPVVTVNDFREGNFRIATVGKP
                     IADTEIKISEDGEILVKGPQIMMGYYKDPELTAEVIKNGYFHTGDIGEVDKDGFLRIT
                     DRKKEMFKTSGGKYIAPQVLENALKQSRFIEQLMVIGENQKMPAALIQPNWEFIAEWG
                     KNKGLSLPTDLNALSQHPKVIARIQKEIDLFNTKFGKWEQIKKFELTPEVWSIELGLL
                     TPTMKMKRKVIKAHYLELIEKIYAE"
     gene            complement(5100..>8209)
                     /locus_tag="DHV98_00025"
     CDS             complement(5100..>8209)
                     /locus_tag="DHV98_00025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HCK04798.1"
                     /translation="LIKKTSKTHPNDIVSAYKDNVAFLSGPKVTQFAPARADQADFFG
                     KKPFDSIISLKAETHNFPTTVEPFNGAATGSGGEIRDRLAGGKGSIPLAGTAVYMTAY
                     SRAQENRPWEQNIAPRPWLYQTPLDILIKASNGASDFGNKFGQPLISGSILTFEHQEQ
                     EEILGFDKVIMLAGGIGYGKQQLAQKDKPQPGDRIVVMGGDNYRIGMGGAAVSSADTG
                     AFSSGIELNAIQRSNPEMQKRTANAIRALVERDQNPIVSIHDHGAGGHLNCLSELIEE
                     TGGQINLDKLPVGDPTLSAKEIIGNESQERMGLVIAPKDLPLLQKIAQRERAPLYDVG
                     EVTSDHKFVIKSEQTGALPMNFDLADMFGSSPKTVLTDQTQKVSFNAVQGSDHEIHSD
                     LAAVLSLEAVGCKDWLTNKVDRCVGGLVAKQQCTGALQLPLNNCGVMALDFEGTHGIA
                     TSLGHSPVAALIDPVAGSRNAVAEALTNLVWAPLSKGLKSVSLSANWMWPANNAGENA
                     RLYQAVKGISDFALDLGINIPTGKDSLSMKQKYPNRDVKSPGTVIVSAAGHCHDISAV
                     VEPNFKLGEGSVFYINLSGMAPCLGGSSWAQTKNKIGDKAPDVRDTQYLAQAFNAVQE
                     LIGQGLIAAGHDVGSGGLITTLLEMCFSGVNIGAQLNMDALTQESDLSTLLFAENVGI
                     VIQVRDQQEALSLLEKRGIQAVNLGSVVAGKNLELNYRGQKINFDIAHYRDIWFHTSY
                     LMDQQQTAAPLAQERYENFKNQPLVFNFPAEFTGKLPESAEWPEEKRQITAAIIREKG
                     SNSEREMAHALYLAGFKVKDIHMTDLISGRETLEEVQFIGAVGGFSNSDVLGSAKGWA
                     GAFRYNEKAKQALDNFFQREDTLSVGICNGCQLFLELDLINPEHDQLAKMRHNRSKKH
                     ESNFTSVTIQQNKSLMLSSLEGTTLGVWISHGEGRFDLPMSEDQYEIVAKYGYNEYPA
                     NPNGSDYNTAMMCDPTGRHLVTMPHIERSIFQWNWANYPEQRADEVSPWLEAFVNARK
                     WLENR"
BASE COUNT         2107 a         1886 c         1715 g         2446 t
ORIGIN      
        1 cgcgccatat ttaagccttg ttcggcttct ggaatagcgt tacccaccat gacatcatcg
       61 atccgatttt tgtccaattg ggggacttga ctcatgagat acgcaattgt ttcggcggcc
      121 aattcatcag ggcgtttgaa acggaataaa cctttaggcg cttttcctac agcagtgcga
      181 taagctttta caatataggc tgtggtcata gtttaatagt ttaagaatca aggttaaatg
      241 gggtctgcca tatttttgat ttttttaatt ttttaattgc gcagcggttt tccagtgcga
      301 atcatttgct gcaaacgttc cagggttttg cgctctccac atagacttaa aaaggcctcc
      361 ctttctaaat caagaaggta ttgctcgctg accatagtcg gttcagataa atcaccgcca
      421 gccataacat aggccaattt attggctatt tttttgtcgt gttcagagat aaagtggcct
      481 gcttgcatgg catcggtgcc caccaaaaac ataccgagtg cttgctggcc aagtacttta
      541 atgtctgttc gctgctgggg ttgggtgtag ccaagttcag ccatcataag tgccgtttgt
      601 ttggctacgg caatttgacg gtctttattc accaccacga tatcttttcc tgactgtaaa
      661 aagtccaaat cgtaagcttc gtgggccgaa gtagcgactt tcgccatacc tatggtcaag
      721 aaatattctt gaagtcgatt aagctcgaca tcatttttgc gatatccatc tgaagcgcgt
      781 aaggtcagtt ctttgcttcc tccccctcca ggaatgacgc ctacgccaaa ttcaaccaga
      841 ccgatataac tttctgcggc ggccacgacg cgatctgcgt gaagagtaag ttcgcatcct
      901 ccgcctaagg tcaacccatg cggggcgacg actgtcggga tactcgaata acgcagacgc
      961 atgacggtat cttgaaaata tttaatggct gcattgagtt catcgtactc ttgttctacg
     1021 gccatcatnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnncccgact gaaaaattag ccccctgatt gccaataacc aatcctgcat agctcttttc
     1141 tgccaggtct aaagcggtat tcaggccagc caaaacatca cccccgatac tgttcatttt
     1201 acttctaaag gcgcaattca aaataccatc tcctaggtcg tgaaccacaa ctccagagtt
     1261 ttggaaaata attttttccg aatccatctg atccagaata atcagggctt cttggcctgg
     1321 gatgtgtcgg taatccttat gattttggtt gtaaaaaagt cttttaccgt cttctgtggt
     1381 gtaaaaacta ctttggtttt gggccatttc taaaatccaa tcagatggtt ttagccctag
     1441 atcctcgatg agctgaattc cttgtttgag tccaataaaa tcccaaatct caaaaggacc
     1501 atgcatccag ccaaatcctg ctttcatggc caaatctata gcaaagagct cgtctgaaat
     1561 ttcggggacg cgttgggaaa cataatgaaa catagcgcca aagtttgccc tgtaaaaagc
     1621 actggctttg tcattgcccg agatgagcac gggaaagcga tcggcaacat ggtctaggga
     1681 ctttgtcttt tcgagcgttt caaatttcac tttttttata ggggcatatt ctaaggtgtt
     1741 gagattaagc gcgtgtattt ccttttttcc gtccttatcg gttacttttt tgtaaaaacc
     1801 ttgtcctgac ttgctgccca accaattgtt ctttaacatg ctctcgacaa aagagaccgg
     1861 tttaaatagg tcgtgcgctt catcttttgg gcaattcttg taaatgccat cagctacgtg
     1921 cgctagggtg tccagtccta cgacgtctac cgtccggaat gttgcactct ttggtcgacc
     1981 gataacaggg cccgtgagct tgtcaatttc ttcaacactc aagccgaggc tttgaacctg
     2041 gtgaaataga ctttgaatcc caaatattcc gatgcgattg ccgataaatg ccggagtatc
     2101 tttggtaata attgtggttt ttcccaagaa tttatccccg tattgggtaa gaaagttcag
     2161 aatctctgga tctgtttttg gtcctggaat aatttcgagt aatttgagat aacgcggggg
     2221 gttgaaaaaa tgtgttccac aaaagtgctt ttgaaaatct tcgctgcgtc cctgcgccat
     2281 atccgcaata ggaataccag aggtgttact gctaatcaat gagccaggtg ttctgtattt
     2341 ttcgatgcgt tcaaaaacct gttgtttaat atcgagccgt tctacgacca cttcaattat
     2401 ccaatcggca tcttttattt tggggagatc actatcgaga tttcccaaag aaacccgttt
     2461 tgcaaagctc ggatggtata gggggctcgg cttagatttt tttgcgtttt caaacgaatg
     2521 tttaacgatc ctatttttga ctaatggatg ctctaaagtc aatcccttgg ccttttcttc
     2581 atcatttaag gcattcgggc ttatatccaa taaaagtacc tcgagtccaa tattggccag
     2641 atgacaggca ataccactac ccattatgcc ggaaccgatg acggcgactt ttttgattgt
     2701 tctttttgac atattaaacc gttttattgc gactgaatga attattgttt tgcgctaaat
     2761 ccattattga ttcagcaact tttgagaaaa tttttaaatc ggcttcgcta attttctgac
     2821 gaaccatttg atcaaatcct aaaacaatat ctttcgaata ttctctcatt tcttgtccaa
     2881 attcggtcaa acaaataagg acacttcgtc catcttcagg gtggggttta cgcatgatca
     2941 gaccacgctc ttccatggac ttaaggatcc ttgataagct ggtggcctcc atccccattt
     3001 tagggcccaa tgccgtagaa ggagaccctt gttcaggatc aatactaatg agtgtaaaac
     3061 cggtagccat ggtgctgtct agctttaggg cttcttcttg gtacattttt gacacggcca
     3121 tccaaacact gcgaaggata tggtcgatgg ttttgtgttt catgtcctaa aggtaatcaa
     3181 tttactatgc atgcataata aaattaacaa aaaaatcccc aatctctaag acaggggagt
     3241 ttatttattc ggcgtatatt ttttctatca attctagata atgcgctttg attacttttc
     3301 gcttcatttt catggtaggg gtaagcagcc ccaactcgat actccagacc tcaggcgtca
     3361 attcaaattt tttgatctgt tcccatttac cgaacttggt attaaacaaa tcaatttctt
     3421 tttgaatgcg ggcaatcacc tttggatgct ggctcagggc attaagatca gtgggtaaac
     3481 tcaacccttt atttttgccc cattcagcta taaactccca atttggctga attaatgcag
     3541 cgggcatctt ttgattttct ccgataacca ttaattgctc aataaaacga gattgtttca
     3601 aagcattttc taaaacttga ggcgcaatgt atttaccacc actggtttta aacatctctt
     3661 tcttgcgatc agtaatgcgc aagaaaccat ctttgtccac ctctccaata tcacccgtat
     3721 ggaaataacc gtttttaatc acttcggcag tgagttcggg atctttatag tagcccatca
     3781 tgatttgggg tccttttacc agtatttcgc catcctcgga gattttaatt tcagtatcgg
     3841 cgatgggttt accgacagtg gcaattctaa aattcccttc gcgaaagtcg tttacagtca
     3901 ctacgggcga cgtttcggtg agcccataac cttccataat tgggatgccg gccgcgttga
     3961 aaacccgcgc taaacgaggc tgtaatgccg cactacccga ggcaactgca cgaagtttcc
     4021 ccccaagggc ttcttgccat ttcttgaaga ttaatgcccg tgctatcttg agttgaaatt
     4081 cataccacca accattttgg ccataaggct cgtagactaa ccctaaatta acggcccaga
     4141 aaaacaatgc ttttttgatc ccagtaaggg ccgctccttt ggcatatatt ttatcgtaga
     4201 ccttttctaa aagtctcggt accgcagtca tgacatctgg atgtatttct tgtagatttt
     4261 cactaatggt ctcaagggat tcagcaaaat agacctcgac accacagtat tgatacatat
     4321 aggaaagcat gcgctcataa atgtgacaaa tgggcaaaaa gctcaaggcc tttgatttac
     4381 ccatttcaat aggcaaccga tcggcactgc ggcgaatgtt tgccgagata ttttgatgac
     4441 tgagcatgac cccttttggt tttccggtcg tcccagaggt gtagattatc gtggccaggt
     4501 catcttcttg aacttcattt ttacgggcat caacctcttg ctgattgctt tggtctgccc
     4561 caagttctaa cacttcgctc cagtgcgcac aatcactcaa ttgatcaaaa ctgtagacgt
     4621 gttttaatga gggcacctgg tcctttatct gcgcaatttt agcgtaaaca tcggcacatg
     4681 aaacaaaaca aatcactgac tcactgtgat gaagaatata ttgataatct tctttcgaac
     4741 tcgtcggata aatagggaca tcttgggccc caatttgtaa tgcaccaaaa tcacagatat
     4801 tccattcact gcgatttgtc gtggaaataa gggcaatttt gtcgtttgaa tttataccta
     4861 gacgcaagag tccgcggctt attgcatttc cttgatcaag gaattcttca ctggatacag
     4921 agatccaaga accattgcgt ttgtctgcaa acgcagtggt taaattatag cgctcttttt
     4981 ggtaataggc aaagtcaaaa agtctggtcg gctgaatcat atctctcctt cgttaattgt
     5041 cactgcaaaa taggaaataa ttttgtgaag gcaatcaacg aggcactctg gcgaaaaact
     5101 tatctgtttt caagccattt tcttgcatta acaaaggctt caagccatgg ggatacttca
     5161 tcggcgcgct gctctggata attcgcccag ttccactgaa aaatagagcg ctcaatatga
     5221 ggcatggtca ccaaatgacg tccagtgggg tcacacatca tggctgtatt ataatcactg
     5281 ccattaggat ttgctggata ttcattataa ccgtatttgg ccacaatttc gtattgatct
     5341 tcggacatgg gtagatcaaa gcgcccttcc ccatgtgaaa tccaaacccc tagggtagtg
     5401 ccctcaagac tagagagcat taaacttttg ttttgttgaa tggtaacact agtgaagtta
     5461 ctttcgtgtt ttttggacct attgtgacgc atttttgcca attgatcatg ctccggattg
     5521 atcaaatcaa gttccaaaaa caactgacat ccattacaaa tccccacaga aagcgtgtcc
     5581 tctctttgga aaaagttatc caaggcttgt tttgcttttt cgttatagcg gaaggcaccg
     5641 gcccaacctt ttgctgaacc caggacatcg gaattggaaa atccgcctac tgcgccgatg
     5701 aattgtacct cttcgagtgt ttcacggcct gaaataaggt cagtcatatg aatatctttg
     5761 accttaaatc ctgcgaggta gagggcatgt gccatttcac gctcgctatt gcttcctttt
     5821 tcgcggataa tggccgccgt aatttggcgt ttttcctcag gccattcggc cgattctgga
     5881 agttttccgg taaactcagc ggggaaatta aagaccagtg gttgattttt gaaattttca
     5941 taacgctctt gagccaaagg agccgccgtt tgttgctggt ccatgaggta agacgtatga
     6001 aaccaaatgt ctctgtaatg tgcgatatcg aaattgatct tttgaccgcg ataatttaat
     6061 tcgagatttt ttccggcaac gaccgagcca agattaaccg cttggatccc tcgtttttca
     6121 agcaaagaca gcgcttcttg ctggtccctg acttgaatga caatcccgac gttttcagca
     6181 aaaaggagtg tacttaagtc gctctcttgg gtcagggcat ccatgttcag ttgagcgcct
     6241 atattgaccc cgctaaaaca catctccagt aaagtggtaa tcaacccccc agagccaaca
     6301 tcatgccctg ccgcgattaa accctgtcca attaattctt ggaccgcatt aaaggcttga
     6361 gccaaatatt gcgtatcccg cacatccggt gctttatccc caattttatt ttttgtttgg
     6421 gcccaagaag aaccgcccaa gcaaggcgcc ataccgctta aatttatata aaaaacggaa
     6481 ccttcaccca gtttaaagtt tggttcaacg acggcactaa tgtcgtggca atgtccggct
     6541 gccgagacaa taacagtccc cggcgactta acgtctcgat tgggatattt ttgcttcatc
     6601 gagagcgaat cttttccagt agggatgtta atgcctaaat caagggcaaa atcactaatg
     6661 cctttcacgg cttgatacag acgtgcattt tctccggcat tgtttgcagg ccacatccag
     6721 ttggcggaca aggatacgct ttttaggccc ttggaaagcg gggcccatac gaggtttgta
     6781 agtgcttctg ccacagcgtt acgggatccc gccacgggat cgattaaggc cgctacgggg
     6841 ctatgtccca aagaagtagc gatcccgtgc gtcccttcaa aatccagggc catcaccccg
     6901 caattattca gcggtaattg caaggcgcca gtacattgct gtttggcgac cagaccaccg
     6961 acacatcggt ccaccttatt ggttagccaa tccttgcacc ccacggcttc gagactgagc
     7021 actgcagcta aatcactgtg aatttcatga tcactccctt gaaccgcgtt aaatgaaact
     7081 ttttgagttt ggtcggtaag cacagtcttg ggagaactac caaacatatc ggctaggtca
     7141 aagttcatgg gtagcgcccc tgtctgttca ctttttataa caaatttatg gtcactggtc
     7201 acttcaccca catcgtaaag cggtgcccgc tcgcgctggg caattttttg aagcagtggt
     7261 aaatcttttg gggcgataac cagacccata cgctcttgag attcgttgcc aatgatttct
     7321 ttggctgaga gggtaggatc accgacagga agtttatcca aattgatctg tcctccagtt
     7381 tcctcaatga gttcactgag acagtttaaa tgccctccgg cgccatgatc gtgaatagaa
     7441 acgatcgggt tttgatcacg ctcaaccaaa gcacgtatgg cattggctgt tcttttttgc
     7501 atttcaggat ttgatcgttg aatggcattg agttcaatgc cgctgctaaa tgcgcctgta
     7561 tcagcacttg aaaccgcagc gccacccatg ccaatacggt aattgtctcc tcccatgacc
     7621 acaatacggt ctccgggctg tggtttgtcc ttttgcgcta attgctgttt tccataacct
     7681 attccaccgg cgagcataat gaccttatca aagcccagta tctcctcttg ttcttgatgt
     7741 tcaaaagtca aaatagatcc actaataagg ggttgtccaa atttattgcc aaagtcagag
     7801 gccccattac tcgctttaat taaaatgtca agcggggtct ggtataacca tggccgcggg
     7861 gcaatatttt gttcccacgg gcgattttct tgagctcttg aatatgcggt catatagacc
     7921 gccgttcctg ctagggggat ggatccttta ccccccgcga ggcgatcacg aatctctcca
     7981 ccgctgcctg tagcggcacc attaaatggt tctacagttg ttgggaaatt atgggtctct
     8041 gctttaagag aaataatact gtcaaacggt tttttaccaa aaaaatcagc ttgatccgct
     8101 cgggccgggg caaattgagt cacttttggt ccagagagaa atgcgacatt gtctttgtag
     8161 gcagagacga tgtcattggg atgtgttttt gatgtttttt taattaatg
//
LOCUS       DPUP01000002           10627 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13953,
            whole genome shotgun sequence.
ACCESSION   DPUP01000002 DPUP01000000
VERSION     DPUP01000002.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10627)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10627)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10627
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1153)
                     /locus_tag="DHV98_00030"
     CDS             complement(<1..>1153)
                     /locus_tag="DHV98_00030"
                     /inference="COORDINATES: protein motif:HMM:PF02872.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HCK04799.1"
                     /translation="GNHEFDLSYDDFQKRLDESSFDWVNTNCYHNTERGIIPFSKVTT
                     LEHNSEAKDLEFQAHMSEIIPEIKMLNVANNRGQTLDIGFFGVTIPSNPKPYVYYADM
                     FQQAQYGVDSLKQLDADIIVGLTHVDIEMDQEIAKSNQDIDLIMGGHEHNNMSIQEGH
                     TLITKSDANAKNIYIHELTYDFDNEVLEIDSNLLSINDHTPENSQIAALVERWDEVLF
                     NAVRQVSDAPYSVVHYTNEPWDGRDAQSRSTQTNLGQVITSAMAHAFDPPLEGAMVNG
                     GSIRLDDFLEGGITPIDFFRVLPFGDGVLKVQMTGALLSEILSYGEAQKGDGAYLQRY
                     GLEQGIDQLWHIGGNRIVPDQLYWIAISEFLMQGYDIPFLTPDNPGVRSV"
     assembly_gap    1154..1309
                     /estimated_length=156
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1310..>1503)
                     /locus_tag="DHV98_00035"
     CDS             complement(<1310..>1503)
                     /locus_tag="DHV98_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HCK04800.1"
                     /translation="PHVVDSLKAINPNTYLFMSGDFLNPSLLGNLKHEGERIKGRQMI
                     EVMNAMNFTMATFGNHEFDLS"
     assembly_gap    1504..1673
                     /estimated_length=170
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1812..2675)
                     /locus_tag="DHV98_00040"
     CDS             complement(1812..2675)
                     /locus_tag="DHV98_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008239703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HCK04801.1"
                     /translation="MSSVKIIECPRDAMQGIKTGIPTELKVAYLQALLSCGFDTLDFG
                     SFVSPRAIPQMADTAAVLTGLDLSETKTKLLAIVANLRGAEAALDYEAIEFIGYPFSI
                     SENFQMRNTHKTIDESMSVLSDILSLADHYGVNVVTYLSMGFGNPYGDPWSPEIVAQW
                     TETLAGMGCKIISLSDTVGAASPEVISELFNGVIPQFPEVEFGAHLHTAPHSWREKVH
                     AAYAAGCRRFDGAIQGFGGCPMAKDELTGNMPTEKLLSYCAEQKIEHGVHMARFESAF
                     NKASDIFLNYH"
     gene            complement(2734..3336)
                     /locus_tag="DHV98_00045"
     CDS             complement(2734..3336)
                     /locus_tag="DHV98_00045"
                     /inference="COORDINATES: protein motif:HMM:PF01810.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine transporter LysE"
                     /protein_id="HCK04802.1"
                     /translation="MLLTFALACFILAITPGPDNMFVATQSIAYGARTGWMITLGLLS
                     GCVLHTSLLAFGFVAVIEQWPELITVIKVCGGGYLIYLAWTIVRSSIDSEQGVMQGQT
                     MSWWYRKGVILNASNPKVFLFFISLFPAFLWDETLSKSIQFFVLGGIFIAVSALVFGL
                     IALFAERFSILRHWLAHHPNTFKIIQASIFALLGIYVLWP"
     gene            complement(3398..>3960)
                     /locus_tag="DHV98_00050"
     CDS             complement(3398..>3960)
                     /locus_tag="DHV98_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002991318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HCK04803.1"
                     /translation="GRVLIGGNIGKNKMTPNDQAVADYLFCFDALFDVVDYFVVNVSS
                     PNTPNLRDLQEKEPLTQLLNTLQNHNNTKATSKPILLKIAPDLTQGQLDDIIQIVAET
                     KIAGVIATNTTLSREGLSHSNKTQTGGLSGKPLTNRATEVIAYLHQKSSGAFPIIGVG
                     GIHSAQDALDKLQAGASLVQLYTGFV"
     assembly_gap    3961..4138
                     /estimated_length=178
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4139..4545)
                     /locus_tag="DHV98_00055"
     CDS             complement(<4139..4545)
                     /locus_tag="DHV98_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010255837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HCK04804.1"
                     /translation="MYQRLIRPLFFLFDPEKIHHTSFRLIKLVHLLGLGGLIKRLFQV
                     NDPSLSREVFGLKFPNPVGLAAGFDKDALAYKELANFGFGFIEIGTVTPKPQEGNPKK
                     RLFRLPTDKGVINRMGFNNKGVAHAVERLKANRG"
     gene            4651..5892
                     /gene="pepT"
                     /locus_tag="DHV98_00060"
     CDS             4651..5892
                     /gene="pepT"
                     /locus_tag="DHV98_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HCK04805.1"
                     /translation="MIAKQHIIDRFVRYVTVDTESDPNSQTTPSSKKQWDLAHALAQE
                     LKDIGMSEVHIDAHAYIMATLPSNVDHHVPTIGFISHFDTSPDFTGANVTPRVIEKYD
                     GKDIVLNKEQNIILSPKDFDDLLLYIGNTLIVTDGTTLLGADDKAGITEIISAMEYLI
                     NHPEIKHGAIKVGFTPDEEIGRGAHKFDVAKFGADWAYTMDGSQIGELEFENFNAAGA
                     TVTINGKMVHPGYAKGKMVNSMYLAQQFIQALPAEETPEKTEGRDGFYHLHHLGGDVE
                     QTKLHYIIRDHDRSRFEERKGLMHQIAQDFNQSLGTQRVAVEIKDQYFNMREKIEPMM
                     HIVDLAQEAMEKAGITPIIKPIRGGTDGSQLSFMGLPCPNIFAGGHNFHGRFEYVPVE
                     SMIKATEVIVNIVTLAATKKD"
     gene            complement(5962..6237)
                     /gene="yajC"
                     /locus_tag="DHV98_00065"
     CDS             complement(5962..6237)
                     /gene="yajC"
                     /locus_tag="DHV98_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008239696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HCK04806.1"
                     /translation="MESISGFMPLILMFLVVYFFMIRPQMKRGKQEKKFAAELKKGDK
                     VVTKSGLHAKVLELTDEQTCILESGAGKMKFERASISMELSQKLQSK"
     gene            complement(6260..6736)
                     /locus_tag="DHV98_00070"
     CDS             complement(6260..6736)
                     /locus_tag="DHV98_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04807.1"
                     /translation="MKKTLFLAVLVAFGMTSCKDNAAEKVSADNVAAAAERDTQADKY
                     PVMSFTETTYDFGTINQGEAQEHVFTFTNTGEADLVIVDAKSSCGCTVPQYPKTPIAP
                     GETGEMLVKFNGSGKNQVSKTVTVTANTQKGKEMISIKAFVTPKDGAVEGSPIKVQ"
     gene            complement(6810..7754)
                     /gene="nusB"
                     /locus_tag="DHV98_00075"
     CDS             complement(6810..7754)
                     /gene="nusB"
                     /locus_tag="DHV98_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HCK04808.1"
                     /translation="MLTRRHIRVKVLQTLYARHQSADEDQVGQEKFLTRSLEQMQELQ
                     ALLLLMIVAVRDQAEKFTQRSQKKYFASDNERNPSVNFINNQIVDLIQNHDSLTQFAK
                     NKKLKNWQQDDEYVIILFNKLKDASWYQDYLSIEGPSFEEDRDFVVRFYKEILAQDEK
                     LYEYIEDKSLTWIDDFPWVNTALVKLLNKVVPSRANEIFTLGVFKDQDDQQFGQNLFR
                     SVLRNHEELQQVLQGKTPNWDQERIADLDLIMLHMGICEFLHFPSIPVRVTINEYLEI
                     AKEYSTPKSSLFINGILDNIIKDLMAKDELNKNERGLR"
     gene            complement(7819..8916)
                     /locus_tag="DHV98_00080"
     CDS             complement(7819..8916)
                     /locus_tag="DHV98_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007649936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine dehydrogenase"
                     /protein_id="HCK04809.1"
                     /translation="MTTTPIDPKTHSAAFSVFGNAAFDNHEQVVFCHDKDTGLKAIIG
                     VHNTVLGPALGGTRMWSYANESEALTDVLRLSRGMTYKSAITGLNLGGGKAVIMGDAK
                     TQKTPELMMKFAAFVHRLGGTYITAEDIGMETADMDLVRTVTPFVTGISEEKGGAGNP
                     SPITAYGVFMGMKAAAQHAFGSALLEDRTVLVQGIGHVGESLVEHLSNEGAKVLIADI
                     NQERLEAVRDKYQATIYAGDNLYEAPVDIYAPCALGATINDQTIEHFNAKIIAGAANN
                     QLADEQRHGAMLKERGIVYAPDFVINAGGIINVYAELEHYGRAEIMRKTENIFDTTLE
                     LLQMSDREDITSHQAAFNVAQQRIDARKRGN"
     gene            9014..>10627
                     /locus_tag="DHV98_00085"
     CDS             9014..>10627
                     /locus_tag="DHV98_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HCK04810.1"
                     /translation="MNALRYVNKFFYKYSGRLIVGLFITAIATVFRIVVPAKIGDSVD
                     SIKAFITGAVSYTELTELLAWDIGMIIGAALLSGFFTFLMRQTIIVVSRNIEYDLKNE
                     IFAQYERLSLSFYKRNRTGDLMSRISEDVGKVRMYAGPALMYSTTTVTLFIVAISYMF
                     YTAPELTLYAVAPLPLLSIGIYKLSIAIHKRSTVVQKYLSELTTFTQERFSGVSVIKA
                     YSLEDRTQNEFEVLANTMKEKNIDLTKVQALFFPLMILLIGLSNVLVIYIGGKQYIEG
                     LIDFGTIVEFLIYVNMLTWPVAIVGWVSSMVQQAEASQKRINEFLNQKPEIVNHSDQH
                     RPIEGRIVFDKVSFTYPDTGIKALDEVSFSVAPGETLAIIGHTGSGKSTVLELIARLY
                     DIDNGLYLLDDCPAREHHLDDLRGAIGYVPQDAFLFSESIADNIRFGAKEATIHEIQE
                     AAKTAYVHHNIEGFDKGYETILGERGITLSGGQKQRVSIARALIKNPKILLLDDCLSA
                     VDTETEEAILSNLAGVKDQKTAIIVSHRVS"
BASE COUNT         2936 a         2263 c         2080 g         2844 t
ORIGIN      
        1 taactgagcg tacaccaggg ttgtctggcg ttaaaaatgg aatgtcatag ccctgcatta
       61 aaaactcact tatggcgatc cagtagagct gatctggcac aattctgttg cccccaatat
      121 gccaaagctg atcgatcccc tgctcgagtc catagcgctg cagataggcc ccatcgcctt
      181 tttgcgcttc cccatagctt aaaatttctg aaagcaaagc gcccgtcatt tgtactttaa
      241 gcacgccatc gccaaagggc aacacccgga aaaaatcgat tggggtaatt ccgccttcta
      301 gaaaatcatc gagtcgaata gaccccccat tgaccatcgc tccttcaaga gggggatcaa
      361 aggcatgagc catagcactg gtgatcactt gcccaaggtt tgtctgagtg gatcgactct
      421 gcgcatctcg accatcccag ggctcattgg tataatgcac tacgctatac ggggcgtcgc
      481 ttacttggcg caccgcatta aacaaaacct catcccaacg ctcaactagg gcagcaatct
      541 gagaattttc tggcgtatga tcgttaatgg acaataaatt tgaatcaatc tccaaaacct
      601 cattatcaaa atcataagtc aattcatgaa tataaatgtt cttagcattg gcgtcggact
      661 tggtgattag ggtatgccct tcttggatag acatattgtt gtgttcatga ccccccataa
      721 tcaaatcgat atcttgatta cttttggcaa tttcttggtc catctcgata tctacatgag
      781 taagaccaac gatgatatcc gcgtccaatt gcttgaggga atcaaccccg tattgggctt
      841 gttgaaacat gtccgcataa tacacataag gtttgggatt gctcggaata gtcacgccaa
      901 aaaatccaat atccagggtt tgaccgcgat tattcgccac attaagcatt ttgatttcag
      961 gaatgatctc cgacatatgc gcctggaatt ctaaatcttt tgcctctgaa ttatgctcga
     1021 gggttgtgac ttttgaaaag gggatgatgc cgcgctccgt gttgtgataa caattggtat
     1081 tgacccaatc aaaggaagac tcatccagtc tcttttgaaa atcatcataa gacaaatcaa
     1141 actcgtgatt tccnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng acaaatcaaa
     1321 ctcgtgattt ccaaaagtgg ccattgtaaa gttcatcgca ttcatcacct caatcatttg
     1381 gcgtcctttt atccgctcgc cttcgtgctt taaattgcct aaaagtgaag ggttgagaaa
     1441 gtccccagac ataaataaat aggtgtttgg gtttatggct tttagtgaat ctacaacatg
     1501 gggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngagccat
     1681 acctccgtaa agccccccac ctaatggggc aatttcataa acatcgttga gctgaacaaa
     1741 atatactttc gtcttttgat cagaacaccc taaaagcgtg aaaagtgcga tgaagtagca
     1801 gaaatatttc attagtgata gtttaaaaaa atatcggaag ctttattaaa tgcgctctca
     1861 aatcgagcca tatgaacacc gtgctcaatt ttttgctccg cacaataact caacaatttt
     1921 tctgtgggca tattgcccgt taactcgtct tttgccattg ggcaaccgcc aaatccttga
     1981 attgcgccat caaatcgtcg acatcctgcg gcataagccg catgaacctt ttctcgccag
     2041 gagtgcggtg cggtgtgcag atgagcacca aattcgactt cagggaattg gggtatgacc
     2101 ccattaaata gttctgaaat aacttcaggg cttgccgccc cgacagtatc gctcaaggaa
     2161 ataattttac agcccatacc cgccaaagtt tcagtccatt gggccacaat ttcggggctc
     2221 catgggtctc catacggatt gccaaatccc atagataggt aggtcacgac gttcacccca
     2281 taatgatcag ccaaggataa aatatcggat aaaacgctca tcgactcatc aatagtttta
     2341 tgggtgttac gcatttgaaa attctctgaa atcgaaaaag gataaccaat aaattcaata
     2401 gcctcgtagt ctaaagcagc ttcagcgcct ctgagattgg ccacaatggc cagtaatttt
     2461 gtttttgtct cactcagatc taaacccgtc aaaaccgctg ccgtatcggc catttgagga
     2521 atggctcgag gagagacaaa acttccgaaa tcaagcgtat caaaaccaca acttaaaagg
     2581 gcctgaagat aagccacctt aagctccgta ggaataccgg ttttgatgcc ttgcatggca
     2641 tcccggggac actcgattat tttgaccgaa gacatgttta aagatacaaa atagccctgc
     2701 gatacattta gattttaaca ggaaaaaagc ccgctatggc cacaagacat aaattcccag
     2761 taaggcaaaa atactggcct gaattatctt gaatgtattc gggtgatggg ccaaccaatg
     2821 gcgcagaata gaaaaacgct cagcgaacaa agcgataagg ccaaacacta gcgcagagac
     2881 cgcaataaaa attccgccta acacaaaaaa ctgaatcgat tttgacagcg tttcgtccca
     2941 aagaaaagcc ggaaataagg agataaaaaa taaaaatacc ttgggatttg acgcattgag
     3001 aatgacccct tttcgatacc accaactcat ggtctgccct tgcattacgc cttgttctga
     3061 atcgatagaa gaacggacga tggtccatgc caaataaatt aaatagcctc caccacaaac
     3121 cttaatcacg gtaatgagct caggccactg ctctattaca gcaacaaagc caaaggctaa
     3181 aagactggtg tgcaacacgc acccactgag cagacccaag gtgatcatcc atcctgtacg
     3241 tgcgccatag gcaatagact gagtggcgac aaacatattg tcaggacctg gtgtaatggc
     3301 caaaataaaa cacgccaagg caaaggtcag caacatggtc cttttatttt tggttcaaaa
     3361 ttgcttgatt gattttttta attaatcctg ggccttccta aacaaaacct gtgtataatt
     3421 ggactaaaga ggcccctgcc tgcaatttat cgagcgcatc ttgagcagag tgaatcccgc
     3481 cgacaccgat tatcgggaac gcccctgaac tcttttgatg gaggtaagca ataacttctg
     3541 tcgcacgatt tgtcaatggt tttccactca atcctccggt ctgcgtctta ttagaatgac
     3601 tcaggccttc acgactcaat gtcgtattcg tggcaataac tccagcgatt ttcgtttccg
     3661 cgacaatttg aataatatca tcaagttgtc cttgagttaa atccggagcg atcttgagca
     3721 aaataggttt tgaggtcgct ttggtattgt tgtgattttg aagcgtattt aataactgag
     3781 tcaagggttc tttttcttga aggtctctga ggttcggggt atttggagaa ctgacattga
     3841 ccacaaaata atcgaccaca tcaaataatg cgtcaaagca aaacaaataa tcggccactg
     3901 cctgatcatt aggggtcatt ttgttcttgc cgatatttcc gccgattaga acccggcccc
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncc
     4141 cctattcgct ttgaggcgct ccacggcatg agcgaccccc ttattattga agcccattct
     4201 attgattacc cctttatcgg taggcaatcg gaataaacgt ttttttggat taccttcttg
     4261 tggttttggg gtcactgtcc cgatttctat aaatccaaaa ccaaaattag ccagctcctt
     4321 gtaggccagg gcatctttat caaaacccgc ggccaaaccc accggattcg gaaatttcag
     4381 cccaaaaact tcacgcgaca ggctcggatc attgacctga aaaagccgct taattaagcc
     4441 tcctagaccc aaaagatgaa ccaacttaat cagtctaaaa ctcgtgtgat gaattttttc
     4501 cggatcaaaa agaaagaaaa gaggacggat aaggcgttga tacatagtca aagtttcgcc
     4561 acaaaattag cattaaaagc actaatttta taagcgattt atcattattt agcaacaacc
     4621 gagttgcgct tattcacaaa aattttatcc atgatagcca aacagcacat tatcgatcga
     4681 tttgttcgct atgtcactgt cgatacggaa agtgacccaa attctcaaac cacaccaagc
     4741 tctaaaaaac aatgggattt ggcccatgca ttggctcaag aattaaaaga tatcggcatg
     4801 tccgaggtcc atatcgacgc ccatgcctac attatggcaa cgctgccgag caatgtggat
     4861 catcatgtgc ctaccattgg ctttatttca cattttgaca cttctccaga ttttaccgga
     4921 gccaatgtaa cgcctcgcgt gatcgaaaaa tacgatggaa aagacattgt tttgaacaaa
     4981 gaacaaaaca taatcctctc tccaaaagat tttgatgatt tattgctcta tataggcaat
     5041 acgctcatag tgacggacgg cactaccctt ttgggcgctg atgataaggc aggaattacc
     5101 gaaattatct cagctatgga atacctgatt aatcatcctg aaataaaaca tggtgcgatt
     5161 aaagtgggct tcaccccaga tgaagaaatc ggtcgcggcg cccataaatt cgatgtggct
     5221 aaatttggcg cggactgggc ttataccatg gatggcagtc aaatcgggga attagaattt
     5281 gaaaatttca atgccgcagg agcgaccgtt accataaacg gaaaaatggt tcatccgggt
     5341 tatgccaaag gaaaaatggt caacagtatg taccttgcgc agcaattcat tcaggcactt
     5401 cctgcagaag agactccaga aaaaacagaa ggccgagacg ggttttatca tctgcatcac
     5461 ttaggtggcg atgtagagca aacgaaactt cattacatca tccgcgatca tgaccgaagc
     5521 cgttttgaag aacgcaaagg actgatgcat caaatcgccc aggatttcaa ccaaagttta
     5581 ggcacacaac gcgtggccgt tgagattaaa gaccagtatt tcaatatgcg tgagaaaatt
     5641 gagccgatga tgcacattgt ggaccttgcc caagaggcta tggaaaaagc aggaatcact
     5701 ccgattatta aaccgattcg tggaggcact gatggctctc aactttcatt tatgggcttg
     5761 ccctgtccca atatttttgc tggggggcac aattttcacg gacgattcga atatgttcct
     5821 gttgaaagta tgataaaagc aacagaggtt attgtgaata ttgtcacatt ggccgcgaca
     5881 aaaaaggatt gaattaatgc cctgtaaaac aaaaagcctc ccgtcgggag gctttttgtt
     5941 tttataaatg tgtgtgataa actatttaga ttggagcttt tgactcagtt ccatggagat
     6001 tgaggcgcgc tcaaatttca ttttaccagc acccgactct agaatacagg tttgctcatc
     6061 ggtaagttcg aggactttgg cgtggagacc acttttggtc acgaccttat cccctttctt
     6121 taattcagca gcaaactttt tttcttgctt tccacgcttc atttgtgggc gtatcataaa
     6181 gaaatacacc actaaaaaca ttaaaatgag cggcataaag cctgaaatac tctccataat
     6241 atagtttgtt atttataact tactgtactt tgatcggcga accttcgacc gccccatctt
     6301 taggcgttac aaaagctttg atgctgatca tttccttacc tttttgcgtg ttagcggtaa
     6361 cggtaactgt tttactgact tggttcttac cacttccatt gaatttcact aacatctcac
     6421 cagtttctcc tggagcaatt ggtgtttttg ggtattgtgg tacggtacaa ccacatgagc
     6481 tttttgcatc gacaatgacc aaatcagctt ctccagtatt cgtgaatgtg aatacgtgct
     6541 cttgggcttc accttgattg atggtcccaa aatcgtaagt cgtttcagtg aaactcatta
     6601 cagggtattt atccgcttga gtatcgcgct cagcagcagc tgcaacgtta tctgcactta
     6661 ctttttctgc agcattatcc ttgcatgaag tcattccgaa tgccacgagt acggctaaaa
     6721 acaatgtctt tttcatgata atttaattta aagagattaa aaattatttg ttgacttaag
     6781 ggaggccaat ttagggattt tttcgcgttt tatctcaacc cgcgctcatt tttgttgagt
     6841 tcatctttgg ccattaaatc tttgattata ttatctaaaa taccgttaat aaagagactg
     6901 ctctttggcg tagaatattc tttggcgatt tcaagatatt cgttaatggt tacccgaacc
     6961 gggatagaag gaaaatgcaa aaactcacaa atgcccatgt gaagcatgat caagtctaaa
     7021 tctgcgattc gttcctgatc ccaatttggt gtttttccct gcagtacctg ttgtaattct
     7081 tcatgatttc tcagaacact gcgaaataaa ttttgtccaa attgttgatc gtcctggtct
     7141 ttgaatacac ccaacgtaaa aatttcattg gcacgactcg gaacgacttt gtttaaaagt
     7201 ttgaccaagg ccgtatttac ccatggaaaa tcatcaatcc atgtaagact tttatcctca
     7261 atatattcat agagtttctc atcttgagcc aaaatctctt tgtaaaaacg caccacaaaa
     7321 tcgcgatcct cttcgaaact aggtccctca atagacaaat aatcttgata ccagcttgcg
     7381 tccttgagtt tattgaacaa aatgattaca tattcgtcat cctgctgcca gttcttcagc
     7441 tttttatttt tggcaaactg ggtaagtgaa tcgtgatttt gaattaaatc aacaatctga
     7501 ttattaatga agtttacgct aggattgcgc tcattatcac tggcaaaata ttttttttgg
     7561 gagcgctggg tgaatttttc tgcttgatca cgcacagcca cgatcattag cagcaataag
     7621 gcttgtaatt cctgcatttg ctcaaggcta cgtgttaaga atttctcttg accgacctga
     7681 tcttcatcgg cgctctgatg gcgcgcatag agcgtttgta atacttttac ccgaatgtgt
     7741 cgtctggtca acataactct aaagaactta gcctaaaaat ttcaaaaaat gatcgggcaa
     7801 atataagact attgaaggtt aattgcctcg tttgcgcgca tcaatacgct gttgcgctac
     7861 attaaatgcc gcctgatgtg aggtaatatc ctcgcggtct gacatttgca ataattcaag
     7921 agtggtgtca aatatgtttt cagtcttacg catgatctca gcacgtccat aatgctctaa
     7981 ttccgcataa acattgatta ttccacccgc attaatcaca aaatcagggg cgtaaacgat
     8041 accgcgctct ttgagcatgg ccccatgacg ctgttcatca gccagctgat tattggcagc
     8101 gcccgcgata attttggcgt taaagtgctc tatagtctgg tcgttaatgg tcgcgcccaa
     8161 ggcacatggg gcataaatat ctaccggggc ctcataaagg ttatctcctg cataaattgt
     8221 cgcttggtat ttatctctaa ccgcttcaag tcgctcttga ttgatatcgg caatcaagac
     8281 tttagcccct tcgttactga ggtgttcgac caaagattct cctacatgtc cgattccttg
     8341 aaccaatacg gttcggtctt cgagtaatgc actcccaaag gcgtgctgtg ccgctgcctt
     8401 catgcccata aaaacaccat atgccgtgat cggggaagga tttcctgcac cacctttttc
     8461 ttcggaaata ccagtaacaa agggcgttac tgtgcggacc aaatccatat ccgcggtttc
     8521 catcccgata tcttcagccg tgatataggt tcctccgaga cggtgcacga acgctgcaaa
     8581 cttcatcatc agctcggggg tcttttgcgt tttagcatca cccatgatta cggccttacc
     8641 tccaccgaga ttcaaaccag taatcgctga cttataagtc attccacgag aaaggcgcaa
     8701 aacatcggtc aatgcttcgg attcattcgc ataagaccac atacgggtcc caccaagtgc
     8761 cggtcctaaa accgtattat gcacaccgat tattgccttt aaaccagtat ctttgtcatg
     8821 gcaaaaaacg acttgttcgt gattgtcaaa ggccgcgttg ccaaacacgg aaaaagctgc
     8881 agagtgtgtc ttgggatcaa tgggggttgt ggtcatttac gaattcgttg aaaatgttcg
     8941 gcaaaaatac ctaagaagtg acgattctgc aaagaattta atttttattg aaaatttatt
     9001 aatccagacc cacatgaatg cactgcgata cgtcaataag tttttttaca aatacagcgg
     9061 caggctcatt gttggactct ttattacggc tattgcaacc gtatttcgaa ttgtggttcc
     9121 tgccaaaatt ggtgattctg tagacagtat caaagccttc atcaccgggg cagtttctta
     9181 tacagaattg accgagctat tggcctggga tatcggaatg attatcggag cggcattgct
     9241 ttcagggttc tttacctttc tcatgcgcca gaccatcatt gtggtttctc gaaacatcga
     9301 atatgattta aaaaatgaaa tttttgctca atatgagcgt ctttcactga gcttctacaa
     9361 aagaaataga acgggtgact taatgagtcg aatcagtgaa gatgtgggaa aggtgcgcat
     9421 gtatgcgggc cctgcgttaa tgtacagtac gacaaccgtc accttattta tcgtggcgat
     9481 aagctatatg ttttatacag ctcccgagtt aacactatac gcggtagcac cgcttccact
     9541 gctctcgatc ggtatctata aattgagtat tgccatccac aagcgcagta ccgtggtgca
     9601 gaaataccta tcagaactaa ctaccttcac tcaagaacga ttcagtgggg tctccgtaat
     9661 taaggcctac agtctagaag acagaaccca aaacgaattc gaagttcttg ccaatacgat
     9721 gaaagaaaaa aacattgacc tcactaaagt tcaagcgctt ttctttccgt taatgatctt
     9781 gttaatcggc ctgagtaacg tgctggtcat ttacattggg ggaaaacaat acatagaagg
     9841 actcatcgac tttggaacga tcgtggaatt tctcatctat gtcaatatgt tgacttggcc
     9901 agtggctata gtgggttggg tttcgtcgat ggttcaacaa gccgaagcct ctcaaaaaag
     9961 aataaacgag tttttaaatc aaaaacctga aatcgttaat cattcagacc agcatcgtcc
    10021 cattgaaggc cggattgttt ttgacaaggt aagcttcact tatcccgata cgggtattaa
    10081 agcgttggat gaagtttcat tttccgtcgc cccgggagaa accttggcta ttattggtca
    10141 tacgggatct ggaaaatcaa ctgtattaga acttattgca agactttacg atattgataa
    10201 cggactttat ctgttagacg attgcccggc tcgggagcat catttggacg accttcgtgg
    10261 cgccattggc tatgtgcctc aggatgcctt tttattcagt gaaagtatcg cagacaatat
    10321 tcgctttggc gcaaaagaag ccacgatcca tgagattcaa gaggccgcca aaacggccta
    10381 tgtccatcac aatattgaag gttttgacaa agggtatgaa actattttgg gggaacgcgg
    10441 gatcactttg agtggcggac aaaagcaacg cgtatcgatt gcaagggcgc ttataaaaaa
    10501 tccaaaaata ttattattgg atgattgcct tagtgccgta gacacagaaa ccgaagaagc
    10561 tattttaagt aatttggccg gggtaaaaga ccaaaaaacg gcgataattg tgagtcatcg
    10621 cgtttct
//
LOCUS       DPUP01000003            3117 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10403,
            whole genome shotgun sequence.
ACCESSION   DPUP01000003 DPUP01000000
VERSION     DPUP01000003.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3117)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..2025
                     /locus_tag="DHV98_00090"
     CDS             <1..2025
                     /locus_tag="DHV98_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006259072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCK04811.1"
                     /translation="TEVLHQLSIENSVLELNGFKKIKHVCLTTEAIKRFLKKFDQFYI
                     VLNQYAVHIPYEDQPVILIDSVLDRFGQVKDDASQELLHLRKSILKVKSSINKSFSQA
                     LSRYAQADFLDEIRESVVDNKRVLAVKAMHRKKVKGVVMGQSKTGSIVYIEPQQTLEF
                     AQELSSLLYQEMEEVKRLLKWLTNALRPFITELTQYEEFLIQVDVWHAKAHYAYAMNG
                     VRPVITKERTLQLIKAYHPLLFLDHQKQKKKTYPQSITLDQNSRIIVISGPNAGGKSI
                     TLKTVGLLQLMTQSGLLIPVDPSSELCLFKRILTDIGDHQSIENHLSTYSYRLKQMNY
                     FLKKCQKDSLFLIDEFGTGSDPELGGALAETFLEEFYAREAFGIITTHYTNLKLLANE
                     LPYATNANMLFDAQSLEPMYQLFVGEAGSSYTFEVAQKNGIPYGLINRAKKKIAGGKV
                     RFDKTIANLQKERSGLRHLSKSLKEQEQSAKVQAEELAQTQQKVQEKLERYQEVFDAN
                     QRLLILGRKVDQLAVRYFNKWTKKGLLDALFKLVMQENSKRTPKTKLQALGDDPKNGA
                     LQKASSADAKCTEKQGKDQSKPNSGNKKQAYDQELKQEVAQLRASKRAKKQKEAEQKP
                     EEEVVFTLGDRVRMIDGVAVGTIDKIEKNKVIVNYGTFTTTVKKDYIEKL"
     gene            2022..2465
                     /locus_tag="DHV98_00095"
     CDS             2022..2465
                     /locus_tag="DHV98_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013633922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol-disulfide oxidoreductase"
                     /protein_id="HCK04812.1"
                     /translation="MSATRVHRIVAFDGLCNLCNSTVNWIIDHDPKQQFKFIALQDIA
                     RLKTGNTEQQEAYALLKNELIDASSDLSSVLLIENGQLYKKSTAVLRICRQLSGLYPV
                     LHTYIIIPRALRDLVYDLIAHNRYKWFGKREQCRVPSPDVKQRFL"
     gene            complement(2491..3117)
                     /locus_tag="DHV98_00100"
                     /pseudo
     CDS             complement(2491..3117)
                     /locus_tag="DHV98_00100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038794.1"
                     /note="frameshifted; incomplete; missing start; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
BASE COUNT         1024 a          679 c          648 g          762 t
ORIGIN      
        1 actgaggttt tgcatcaact ctctattgaa aatagtgtcc ttgaactcaa tgggtttaaa
       61 aaaatcaaac acgtttgcct gaccactgaa gcaatcaaac gctttcttaa aaagtttgat
      121 cagttttata tcgttttaaa ccaatatgcg gtccatattc cttacgagga tcaacccgtt
      181 attttaattg acagtgtttt agatcgattt ggtcaggtaa aagacgatgc ctcccaggaa
      241 ttgttgcatt tgcgtaaatc aattctcaaa gtaaaatcaa gtattaataa atcgtttagt
      301 caagccttgt cccgctatgc tcaagcagat ttcctcgatg agattcgcga gagtgttgtc
      361 gacaataaac gcgtcttggc cgttaaggca atgcaccgaa aaaaggtcaa aggcgtcgtt
      421 atgggtcagt ccaaaacagg aagtattgtt tacattgaac cccagcaaac tctggagttt
      481 gcccaagaac ttagcagcct tctttatcaa gaaatggaag aggttaaacg cttactcaaa
      541 tggttgacca atgccttaag acccttcatt accgaactca cacaatacga agagttctta
      601 attcaagtcg atgtttggca cgcaaaggcc cactatgcat acgccatgaa tggggtgcgt
      661 cctgtaatta ccaaagagcg aacactacaa ctcattaaag cctaccaccc tctgctgttt
      721 ttagatcatc aaaaacaaaa gaaaaagacc tatccgcagt ccatcactct ggatcaaaac
      781 agtcgcatta ttgttatttc tgggccaaac gcggggggca agagtatcac cctcaaaacc
      841 gtgggtttac tgcagctcat gacgcaaagc gggctgttga ttcctgttga cccctctagt
      901 gaactttgtc tctttaaacg cattttaacc gatataggag atcatcagtc tattgaaaat
      961 cacctaagca cctacagtta tcgcctgaaa caaatgaatt actttcttaa aaagtgtcag
     1021 aaagacagtt tgtttttaat cgatgaattt ggaaccggta gcgaccctga acttggtggg
     1081 gctttggcag agacgttttt agaagagttt tatgcccggg aagcctttgg cattatcacc
     1141 acacactata caaatctcaa gcttttggcc aatgaattac cttatgcaac caatgccaat
     1201 atgctttttg acgcccaatc tttagaacca atgtatcagt tattcgtggg agaagcaggg
     1261 agttcataca cgtttgaggt ggcgcaaaaa aatgggattc cctatggact gatcaatcgc
     1321 gcgaaaaaga aaatcgctgg gggtaaagtt cgttttgaca aaaccattgc caatcttcaa
     1381 aaagagcgct caggcttaag acatctctcc aaatcgctga aagaacaaga acaatcggca
     1441 aaggttcagg ccgaagaact cgcccaaaca cagcagaaag ttcaagagaa actcgaacgc
     1501 tatcaagaag tgtttgatgc taatcaaagg ttattgatct taggacgtaa ggtggaccaa
     1561 ttagccgtgc gttattttaa taaatggact aaaaaaggcc tactcgatgc attgtttaaa
     1621 ctggtcatgc aagaaaacag caaaagaacg cccaaaacca aactccaagc cttgggagat
     1681 gatccaaaaa acggcgcatt acaaaaagca tcttctgcag acgctaagtg cactgaaaaa
     1741 cagggaaaag atcaaagcaa acccaatagt ggcaataaaa aacaagccta cgatcaagaa
     1801 ttaaaacaag aggtggcaca attgcgcgcc tcaaagagag caaaaaaaca aaaggaagca
     1861 gaacaaaagc ctgaagaaga ggtggtcttt acccttggcg atcgggttag aatgatcgat
     1921 ggtgtggcgg tgggaaccat cgataaaatt gaaaaaaaca aggtcattgt aaattacgga
     1981 acgttcacca caaccgttaa aaaggactat atagaaaaat tatgagtgcc actagggtcc
     2041 atagaattgt cgcttttgac ggcctgtgta atttgtgtaa cagtactgta aattggatta
     2101 ttgatcatga cccaaaacaa caattcaaat tcattgccct tcaagatatc gcccggctta
     2161 agacggggaa taccgagcaa caggaggcct atgcactgct caaaaatgaa ttgattgacg
     2221 cctcttctga tctttcgtcc gttttattaa ttgaaaatgg acaattatat aaaaaatcaa
     2281 cggccgtatt gagaatatgc agacaactct ctggacttta tcccgtgctt catacttata
     2341 tcattattcc tcgggcatta cgagacctgg tgtatgacct tatcgcacac aaccgttata
     2401 aatggtttgg gaaacgtgaa cagtgtcgtg tcccctcccc tgatgtaaag cagcgctttt
     2461 tataaaaagg tttcttggat aaagaaaacc ttagtcctct tgggatttgt ttacccaaag
     2521 cgacaccatg gcatctcccg tcacattaat cacagtacga cacatatcca atggacgatc
     2581 tacggcaaaa ataagcgcaa ggcctgcttc tgggataccg gcctgggcta aaacgatgat
     2641 gnnnngactg cggctgagcc aattgaggcc aaggttgctg tagcgactat gcccatttgt
     2701 gttgcaaagt ctaaatccat cccaaaggcc tgtgcaatga atacggccgc tacggcctga
     2761 tataaacttg taccgtccat attgatggtc gccccaatgg gcaacacaaa actggccacc
     2821 tctttacgca caccaagctc ttcttcgacg cattccattg tgacaggtaa ggtagcggca
     2881 ctagaactgg tcgaaaaagc gagtaattga gcaggggaaa taccgcgtaa aaaatcaaac
     2941 ggattacgcc cgataacaaa acgaatgatc aaaagataaa tcagtacgag taaaatcaaa
     3001 ccaatcacga cacaaagggc ataccaaagc agtgcagcaa ataagtcagc agagggcgct
     3061 tcaacaacca atgcggccat caatgcaaag accccgtaag gcgccaaagc catgatt
//
LOCUS       DPUP01000004            4202 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13320,
            whole genome shotgun sequence.
ACCESSION   DPUP01000004 DPUP01000000
VERSION     DPUP01000004.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4202)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4202)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4202
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..405
                     /locus_tag="DHV98_00105"
     CDS             <1..405
                     /locus_tag="DHV98_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HCK04813.1"
                     /translation="TCALPISFTDLCRPNDLGCKLNLQPIYFDFDRYSIRKDATVELA
                     KILVAMQEHQEIIINIESHTDQRGSEDYNEILSSKRAAATRSWLIENGIAAERLTAKG
                     FGASQPLIDCNQDSCSEEEHQLNRRSVFLVQQ"
     gene            508..1026
                     /locus_tag="DHV98_00110"
     CDS             508..1026
                     /locus_tag="DHV98_00110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate delta-isomerase"
                     /protein_id="HCK04814.1"
                     /translation="MTQEHVILVNEKDEPLGTMEKMEAHQKAVLHRAFSVFIFNHNNE
                     LMLQQRALHKYHSPGLWTNTCCSHQRMGEDSEGAGMRRLREEMGFETTLTFKGSFIYR
                     APFDNGLTEHELDHILVGHYDGQPQINPEEVASWRWISMDALKKDIDQNPDLYTVWFK
                     IIFDKYCELISS"
     gene            1023..>1398
                     /locus_tag="DHV98_00115"
     CDS             1023..>1398
                     /locus_tag="DHV98_00115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydrobiopterin synthase"
                     /protein_id="HCK04815.1"
                     /translation="MSTTLYRKAHFNAAHRLFLPQWSDEKNASVFGKCSNPNYHGHNY
                     ELEVGITGPIDPVTGFVMDVAELKALIKTEVEDPFDHKNLNLEVPEFKDLIPTVENIA
                     QVIWAKLRGRISMQYDITVKLYE"
     assembly_gap    1399..1550
                     /estimated_length=152
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1562..2536
                     /locus_tag="DHV98_00120"
     CDS             1562..2536
                     /locus_tag="DHV98_00120"
                     /inference="COORDINATES: protein motif:HMM:PF01238.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HCK04816.1"
                     /translation="MELGFLKFEAQQFSKVWGGEKLHKFYAKPAGTRIGESWEISGVS
                     GKISSISQRDIKEKSLHDLIQSFGPDLLGQRVYETYKGEFPLLFKFIDAKEDLSVQLH
                     PDDTIAKQYHDSFGKTEMWYVLQADPEARLVIGFKPEVTLLDYKQAVERGNITHLLNE
                     VPVQPGDAFFIAPGLVHAIGGGVVLAEIQQTSDVTYRIYDWDRPDVNGAFRELHLEQA
                     ERALVFHDLAQVFCRPQTILKNKANLVYSCEYFQTSLWNCTQKVSMTTNPEESFMVLM
                     CISGSAELISSKGQTMPMNCGETVLVPAALGNFDVKTSGAEILEVIVP"
     gene            2576..2842
                     /locus_tag="DHV98_00125"
     CDS             2576..2842
                     /locus_tag="DHV98_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008638885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04817.1"
                     /translation="MSSKRDLKKDINYVLGDIIEAVYIWEMSNPEKGVEASGKIIDEA
                     IEVFDVLIHKLNDRSVENKKQHFKGINQELETRGRALIDKINAL"
     assembly_gap    2946..2999
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3000..3632)
                     /locus_tag="DHV98_00130"
     CDS             complement(<3000..3632)
                     /locus_tag="DHV98_00130"
                     /inference="COORDINATES: protein motif:HMM:PF14289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04818.1"
                     /translation="MRKLALALLAITGIYGCSNTQGNTLINGQIKGLNKGQLLLQKID
                     DTMLVSMDSLRIYASPEFSFSIDLTEPEVLYLALKFDDSITQTRYLPFFAEPGTLEIK
                     TSLKGFGYDQTVTGSKNQNSWNEFKLLQGRYNDKQLALIQAELLANQNDNTEEIKRIQ
                     QQREKLLRARYLATVNFAKNHKDLALAPYLMLAEIPDVNVKYHDTIYKLLT"
     gene            complement(3692..>4202)
                     /locus_tag="DHV98_00135"
     CDS             complement(3692..>4202)
                     /locus_tag="DHV98_00135"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCK04819.1"
                     /translation="VAAHDGCDGFISVAGAGQSIDRVVLDQLSLQLPGAVPGAAEAFN
                     TLKQTGRVDNFPQELSTIFRPSIQSFIYQWMSYDPAAILASLPIPSLILNGTSDLQVS
                     EQEALRLKKNAPNAEFSLILNMNHVLKIIEEKGLANGKSYNDPNLPVSEELLEKITEF
                     VNKNSSKSP"
BASE COUNT         1164 a          779 c          889 g         1164 t
ORIGIN      
        1 acgtgtgctc ttccgatctc atttacagat ttatgcaggc ccaatgactt agggtgtaaa
       61 ctaaatctcc agccaattta ttttgatttt gaccgctata gtattcgcaa agacgccact
      121 gtagaattgg ccaaaatctt ggtagcaatg caagaacatc aagagattat tatcaatatt
      181 gaatctcata cagaccaacg cggaagtgaa gattataacg aaatactttc ttctaaaaga
      241 gcggccgcga cacgcagctg gcttatcgaa aatggaattg cagccgaacg tttgactgcc
      301 aaaggctttg gagcgtcaca accgcttatc gactgtaatc aagatagctg cagtgaagag
      361 gagcatcagt tgaatcgccg ctcagtattt ttggttcagc agtaattgat agagctgcaa
      421 gtgtgctgaa ggtaatggta tggcagtgaa acacggccaa aactttagta cttctgcgtt
      481 cattttgtac ctttgtcaaa aattgcaatg acccaagaac acgttatact ggtcaacgaa
      541 aaggatgagc cccttggtac tatggagaaa atggaggcgc atcaaaaggc cgtcctccat
      601 cgggcattct ccgtgtttat tttcaatcat aacaatgagc tgatgctcca acagagggcg
      661 ttgcacaaat accactcgcc aggtctatgg accaatacat gttgcagtca tcagcgcatg
      721 ggtgaggatt ccgagggtgc gggaatgcgc agattgcgtg aagaaatggg ctttgaaaca
      781 acactgactt tcaaaggatc atttatttat agagccccgt ttgacaatgg gcttaccgag
      841 catgaactcg accacatttt agtgggccat tacgacggac agccacagat aaatcctgaa
      901 gaagtggcca gttggcgatg gatctccatg gatgctttaa agaaggatat tgatcaaaat
      961 cctgatcttt acacggtttg gtttaaaatt atttttgaca aatattgtga attaatatcc
     1021 tcatgagtac cactttatat agaaaggccc atttcaacgc ggcacatcga ttgtttttac
     1081 ctcagtggag tgatgagaaa aatgcgtctg tatttggaaa gtgcagtaac ccgaattatc
     1141 acggacataa ttacgaactt gaggtcggga ttaccgggcc gatagatcct gtgacgggat
     1201 tcgtaatgga tgttgctgag ttaaaagccc tcattaaaac tgaagtggag gaccccttcg
     1261 atcataagaa tttgaatttg gaagttcctg aatttaagga ccttattccc acagtagaaa
     1321 atatagctca ggtgatttgg gctaagttac gtggtcgaat ttccatgcaa tatgacataa
     1381 ccgttaagct ttacgaacnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn tgcataagtc
     1561 tatggaacta ggatttttaa aatttgaggc gcaacaattt tctaaagttt ggggcggaga
     1621 aaaacttcat aaattttacg cgaagcctgc cggaacacgt atcggagaaa gctgggaaat
     1681 ttctggcgta tcgggaaaaa tttcgtcgat ctcccaacga gatataaagg agaaaagtct
     1741 gcatgattta attcagagtt ttgggcctga cttattgggc cagcgggtgt atgaaaccta
     1801 taaaggtgaa tttccactgt tgtttaagtt tatcgatgcc aaagaagact tatcggttca
     1861 actccatccc gatgatacca tagcgaaaca gtatcacgat agttttggaa aaacggaaat
     1921 gtggtatgtc ttacaggcag accccgaggc gcgactcgtt attggtttca aacctgaagt
     1981 cacgcttttg gactataaac aagccgtcga aaggggaaac ataacccatt tgttaaatga
     2041 ggtgcctgtt cagccgggcg atgccttttt tattgcccca ggcctcgttc atgccatcgg
     2101 cgggggggtt gttttggcag aaattcaaca gacctcagat gtgacctata gaatttacga
     2161 ttgggatcgc cccgatgtaa acggtgcatt tcgtgaattg catttggaac aggcagagcg
     2221 tgccttagtg tttcatgatt tggcacaggt cttttgtcgt ccacaaacga ttttgaaaaa
     2281 taaggcgaac ctagtgtatt cctgtgaata ttttcaaacc tcgctttgga actgcaccca
     2341 aaaagtttcc atgaccacga accccgaaga atctttcatg gttttaatgt gtatttctgg
     2401 tagcgcggag ttgatctctt caaagggcca gaccatgccc atgaattgcg gagagaccgt
     2461 cttagttcct gccgcattag gaaattttga cgttaaaact tcaggagctg agattttaga
     2521 agttattgtc ccataaggac ccaaaaaaca ttatttttgc tcaaaatttt taaccatgtc
     2581 aagtaaaaga gacttaaaaa aagacattaa ttacgttcta ggtgatatca tagaagcggt
     2641 ttatatttgg gagatgtcta atcctgaaaa aggggtagag gcttctggga aaattatcga
     2701 tgaggcgatt gaggtgtttg atgtgttaat tcacaaactt aacgatcgtt cagtagagaa
     2761 taaaaagcag cattttaaag gcatcaatca ggagctcgaa acccgtggtc gcgcactaat
     2821 tgacaaaatc aatgccttat agaactgaat ccttttgttg attcataaat aactccaatg
     2881 ccttaccgta tttggagttt tttatttctg ggcgcaacag cttgaatatt gtatcgtggt
     2941 atttgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng
     3001 gtgagcagtt tgtagatagt gtcatggtat tttacattga catctggaat ttctgctaac
     3061 attaaatagg gggccaaggc caagtcctta tgatttttgg caaagttaac tgtggccaaa
     3121 tagcgagcgc gcaacagctt ttctctttgt tgttgaatgc gctttatttc ttctgtattg
     3181 tcgttttgat tggccagtaa ttcggcttga ataagcgcaa gctgcttatc gttatagcgc
     3241 ccttgcaaca gtttaaattc attccagcta ttttgatttt ttgagccggt aacggtttga
     3301 tcatacccaa aacctttgag acttgttttg atttcaaggg ttccaggctc cgcaaaaaag
     3361 ggcaaatagc gcgtttgagt aatactgtcg tcaaacttta aagccaaata cagcacttct
     3421 ggttcagtca aatctatcga aaaggaaaac tccgggctgg cgtaaattcg caacgagtcc
     3481 attgagacca gcatggtgtc gtctattttt tgcaacagaa gttgtccttt attgagtcct
     3541 tttatctggc cgttaattaa cgtgttgcct tgggtgttgg aacaaccata aataccagtt
     3601 atggccaata aagcgagcgc cagttttctc ataaacctta aattaattga gtcacaaaga
     3661 tgcaaaaatt gtcaacaata atttgtctcg actaaggtga tttggatgaa tttttattga
     3721 caaattcagt gattttttcg agcaattctt cagagactgg taaatttgga tcattataac
     3781 ttttcccatt agccagtcct ttttcttcga taatcttgag cacatgattc atgttcaaaa
     3841 taaggctgaa ttctgcgttt ggcgcatttt ttttcagccg taaggcctct tgttcagaca
     3901 cttgtaaatc actcgttcca ttaagaataa gcgagggtat aggtaaagaa gccaatatcg
     3961 ctgccggatc atagctcatc cattggtata taaagctttg aatgctcggt ctaaaaattg
     4021 tactgagttc ttgcggaaaa ttatcgactc gccccgtttg ttttaacgta ttaaaggcct
     4081 ctgcagcccc gggcacggca ccaggtaatt ggagggaaag ttggtctaaa accacgcgat
     4141 cgatactttg ccctgctccg gcaacagaaa taaatccgtc acaaccatca tgagcagcaa
     4201 cc
//
LOCUS       DPUP01000005           15750 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6409,
            whole genome shotgun sequence.
ACCESSION   DPUP01000005 DPUP01000000
VERSION     DPUP01000005.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15750)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15750)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15750
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(29..105)
                     /locus_tag="DHV98_00140"
     tRNA            complement(29..105)
                     /locus_tag="DHV98_00140"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:complement(69..71),aa:Asn,seq:gtt)
     gene            complement(191..1516)
                     /gene="rseP"
                     /locus_tag="DHV98_00145"
     CDS             complement(191..1516)
                     /gene="rseP"
                     /locus_tag="DHV98_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HCK04820.1"
                     /translation="MSPFAVKALQLLLSLSLLIVLHELGHFIPAKLFKTRVEKFYLFF
                     DVKYSLFKKKIGETVYGIGWLPLGGYVKIAGMIDESMDKEQMAGPPQPWEFRSKPAWQ
                     RLIIMLGGVTVNIIVGLVIYISILFFYGRDVITADDMPEGFVVHEIFQEYGFRDGDLV
                     LELNDEPFDYQNELNKSLFLKEVRSLTVRHREGGIERIELPTDIGTLMFQQDVLKPFE
                     YMRNNQIDTVFADFPAGLAGLQKGDLILNTNGTEVTHWHEFNKAINKTPGAENTLVYE
                     RDGVRDTLMIATAETGQLGLNNFGRQWLNRGTHLSFSLGESLSSGTSYGVGILTDYVK
                     QFKYVFTKKGATQVGGFGAIGNMFPGQWDWLSFWQTTALISIILAFMNILPIPALDGG
                     HVMFLLYEMVSGKKPNDKFMEYAQMVGFFLLIGLVLFANGNDLVRWIFG"
     gene            1665..2333
                     /locus_tag="DHV98_00150"
     CDS             1665..2333
                     /locus_tag="DHV98_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HCK04821.1"
                     /translation="MLKFFAKYKTLALVMSILSVIIISAIYNALAPEPQLRIYQPNDV
                     APELVDTTLQHVKKYHQIADFSLVNQLGDTITQKTFEGRIYVADFFFTTCATICPIMT
                     QHMGEIQKNIKNDPDILLLSHTVTPEIDTVAQLQRYAQKKGVIPGKWHLVTGDKKEIY
                     DLARKSYLVAKDQPYSPYDLVHTENFVLIDTQRRIRGFYDGTDPEAIASLLEDISILK
                     KEGQ"
     gene            2397..2621
                     /locus_tag="DHV98_00155"
     CDS             2397..2621
                     /locus_tag="DHV98_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HCK04822.1"
                     /translation="MATIAGMQKGQKGIIRDVDLDRIPLKLLEMGCLPGNEVTLIQVA
                     PFNDPLYLDINGSHLAIRKDVAAQIYIDLC"
     gene            2625..>2884
                     /locus_tag="DHV98_00160"
     CDS             2625..>2884
                     /locus_tag="DHV98_00160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HCK04823.1"
                     /translation="MAQQIQVALLGNPNTGKTSVFNRLTGLNQKVGNYPGITVEKKEG
                     VCNLSRGKKAHILDLPGTYSLNASSIDENQVIELLLNKNDKD"
     assembly_gap    2885..3143
                     /estimated_length=259
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3144..>3410
                     /locus_tag="DHV98_00165"
     CDS             <3144..>3410
                     /locus_tag="DHV98_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HCK04824.1"
                     /translation="PTILAINMADRMTRKAISLDIPALEKALHTKIVLLSARNNEGFE
                     ALKTQIEQFKNLPMTPCLDTTVIAPEYFDRLAKTYPAQDLYKLWL"
     assembly_gap    3411..3641
                     /estimated_length=231
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3642..5090
                     /gene="feoB"
                     /locus_tag="DHV98_00170"
     CDS             <3642..5090
                     /gene="feoB"
                     /locus_tag="DHV98_00170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HCK04825.1"
                     /translation="GVSGPISFQTESISTLKRLQQKETIKRYQFINDTLKTTMTVNVA
                     MAKDFRSRLDRVLTHHVWGYVIFFAVLTVIFQAIFDWSSYPMDFIDQTFAQMGEWVKQ
                     NLPKGDFTSLLAEGVLPGLGGIIIFIPQIAFLFLFIAILEETGYMSRVVFLMDRVMRR
                     FGLSGKSVVPLISGTACAIPAIMATRNIENWKERLITILVTPFTTCSARLPVYLIIIS
                     LIIPQQRVLGLFSLQGLTXXTFLYFLGFASAIFAAFLLDRFLKVPSRSFFVIEMPNYK
                     LPMAKNVLITMVEKTKSFVFGAGKIIFAISIVLWVLASYGPGEFNHAPEIIDQRNPDN
                     TLSVAARNAAIESFQLEHSYIGIMGKAIEPIVSPLGYDWKIGIAIVSSFAAREVFVGT
                     LATIYSVGNDDEQTIRNRMAAEVHPLLGTPRFNFASGVSLLLFYAFAMQCMSTLAVVR
                     KETNSWVWPAGQLIFMTTLAYVVAFITYQILN"
     gene            5090..5254
                     /locus_tag="DHV98_00175"
     CDS             5090..5254
                     /locus_tag="DHV98_00175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HCK04826.1"
                     /translation="MDFQKVLVGLTFLAALLFLLRKFIWIPITDSRKKSLGTLDGGKT
                     KCGSDDCQCH"
     gene            complement(5251..6072)
                     /locus_tag="DHV98_00180"
     CDS             complement(5251..6072)
                     /locus_tag="DHV98_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013305623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HCK04827.1"
                     /translation="MDSVIAYLEQIDPVMAALYAGLFTWGLTALGASFVFFFKSMNRA
                     VLDGMLGFTGGVMVAASFWSLLAPGIEMSPGEGFDKVWPSAIGFFLGALFIFGLDKIL
                     PHVHINFKDSQSEGLKTPWHRTTLLTLAITLHNIPEGLAVGVLFGGVAAGFDGASISA
                     AVALALGIGLQNFPEGIAVAMPLRRTGVSRKKSFMFGQASALVEPIFAVLGAWAVLTF
                     QPILPYALAFAAGAMIFVVIEEVIPETQMDKNTDIATMGFIGGFIMMMTLDVGLG"
     gene            complement(6164..7024)
                     /locus_tag="DHV98_00185"
     CDS             complement(6164..7024)
                     /locus_tag="DHV98_00185"
                     /inference="COORDINATES: protein motif:HMM:PF13557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK04828.1"
                     /translation="MYSLVKILTLSLFLIGSATAVAQQTNPSKTPQGTPLENSPETTT
                     DHSIITDRPDATESPNTVEPGFIQIETGAYYTRFEENGTTAETLGYNTTLARIGLLEN
                     LELRLGVNYEDNRLTSKMGATEVSSDFKSFTPMLAGIKINLFEGRSGTDFGFLGHLYL
                     PFSTSTPEGMTPESQTTGADFRFSVGHELSDRSGIAYNLGGQWSGDHTGMAFVYTVAY
                     GYALSNHIGAYVELYGDAPEHSAANHYWDAGFTYLAGWNLQYDITFGRSITEGQDLLL
                     SAGLSYKFAY"
     gene            complement(7008..7727)
                     /locus_tag="DHV98_00190"
                     /pseudo
     CDS             complement(7008..7727)
                     /locus_tag="DHV98_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006262412.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron-dependent repressor"
     assembly_gap    7131..7184
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(7944..8681)
                     /locus_tag="DHV98_00195"
     CDS             complement(7944..8681)
                     /locus_tag="DHV98_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DjlA"
                     /protein_id="HCK04829.1"
                     /translation="MIRWFLGILGMVYFRWPGAILGFIIGNIIDNMNAGKIYPGRGGS
                     FGRPTRQNIPAEFELKLLALASVVIKADGKVEQSELDFVRRYFVQAYGKERANTTFRL
                     FNEEIKKSGVSGSAIALELKRVLTYETRLQVLHFLFSVANADGLVSESEVTQLENIAR
                     AFSINLQDFGSIKAMFFDNPDRAYEILEVPKTASVSDIKKAYRTMVKKYHPDKLQDMD
                     EAYRKGAEEKFRAVQQAYERIQKERGF"
     gene            8840..9250
                     /locus_tag="DHV98_00200"
     CDS             8840..9250
                     /locus_tag="DHV98_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HCK04830.1"
                     /translation="MYPAEIVKPMREDLSLFGFKELFTADEVHAAIDQEGTVLVVVNS
                     VCGCAAANARPGAKMSLMNDKKPDHLTTVFAGVDFEAVDAARAAMVPFPPSSPSIALF
                     KDGELVHMLERHHIEGRSAEMIAANLKSAFDEFC"
     gene            complement(9280..>10527)
                     /locus_tag="DHV98_00205"
     CDS             complement(9280..>10527)
                     /locus_tag="DHV98_00205"
                     /inference="COORDINATES: protein motif:HMM:PF13517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCK04831.1"
                     /translation="STVFEADKASEDVDALFFDADGDGDMDLYVVSGGNEFPLNDVRL
                     QDRLYINDGTGNFVRDKKAIPSVYHSGGVVVPFDHDRDGDVDLFVGSYVTPGRYPEMP
                     QSTLLENNNGQFTDQSNNWFSENSSIGMINDAVFTDLNNDGTPELVLSGEWMPITILG
                     LENGKWADQTSSYGLDKNIGWWHSVSAMDVNGDGYQDLIAGNLGLNSIFKASAKEPTT
                     LYYKDFDNNKSIDPILCTYVEGESYPILNRDRLLNHMVFLKKRFTRYAPYARAKIEDI
                     FTEAELKDAGYLEANNFEHTVFINNGKGGFETQSLPFETQWSVLNTAISWDLDGDGTT
                     EVIVGGNYYGTDAEFSRYDASIGTALKWNGTHFDVIPAKDTGLMLDGNLRHLKPITID
                     GEQKLLVIRNNEQFSLFGNNKAN"
     assembly_gap    10528..10587
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10588..>11628)
                     /locus_tag="DHV98_00210"
     CDS             complement(<10588..>11628)
                     /locus_tag="DHV98_00210"
                     /inference="COORDINATES: protein motif:HMM:PF07593.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04832.1"
                     /translation="AQFPINSMQINRGNGKFSDLSFVDLVAQTEWSWSVLLADFDNDG
                     NKDIHITNGYVRDITNNDYRQYEFDGLKRRMAAKELSLLEWIQFIPSDPVRSFLFRNK
                     GELRFEDKSADWNSGPEAFSSGSAYSDLNNDGYIDLVVNNVNAAPFIMKNSGEKNYAN
                     HWLSIVFDNESLPFAYGCKAELILDNGASLYESYQPTRGFYSSSQHKLHFGLGADLKP
                     IALEITWPDQTRQRWTDLPLDSILTVSKNPNLAQITGKGRDKKSTYFTQQNNLITEEF
                     SHTENAFIDFKGQLLLHKKLSDQGPAAAVGDVNKDGLEDIYIGGAAYESGRLMIQKPG
                     GRWQKSSTVFEA"
     assembly_gap    11629..11725
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<11726..12775)
                     /locus_tag="DHV98_00215"
     CDS             complement(<11726..12775)
                     /locus_tag="DHV98_00215"
                     /inference="COORDINATES: protein motif:HMM:PF13517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCK04833.1"
                     /translation="MFNQTRIFIFLALTLIACNDQEEHSNSDAVPPLFEFLGPEVTNI
                     DFVNQIGENEKFNILLYENLYNGGGVSVGDINNDGLDDLYFSGNTASNKLYLNQGNFE
                     FKDITDFAGVSGEGGFKTGVSIIDINQDGFLDIYVCRSALASPRMRANVLYINNGDLT
                     FTEMGSVYGIDDESYSAQGYFLDSDLDGDLDLYLINHPNDWKESNAINLMRDNNGELK
                     RALPMGYQYISDRYYENVNGKFVEKSESAGILNNSFSHSAVVADFNEDHLPDLYICND
                     YIGPDQLLINQGNHTFIDKWTDYFSHTSFSSMGSDYADVNNDGGFDLFTLDMSPKNNF
                     RRKMMSMAQNYDKFEV"
     gene            complement(12779..14104)
                     /locus_tag="DHV98_00220"
     CDS             complement(12779..14104)
                     /locus_tag="DHV98_00220"
                     /inference="COORDINATES: protein motif:HMM:PF01569.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidic acid phosphatase"
                     /protein_id="HCK04834.1"
                     /translation="MLKEKKMSGKNIVFGLCLLGFLMNGCSAPEKINLSRADLNYANT
                     VLLDAAMADVFTPPVASRIFAYSHLAHYISFQGASKESLPEITQHIHGLEEFQLPDKQ
                     GVDPQLAALFAFSKMGKKLIYSEQFFVDLDSVLIQRAKKNNFTDHEIEQSREFARGIH
                     EQLAQWVDQDQYIQTRTYPRFTSTKKPQNWRETPPDYESALEPYWDHIRPLVIDSLSI
                     YEPRPLPEYSTDKNSDFYAMVHEVYAESRNEEKEKIAWFWDCNPVLTIHQGHMIQTIH
                     KYSPPGHWLNIVTQVTEQNNSDYAKATQAYTYVATAMFDAIIAVWHYKFKTDLVRPIT
                     YIQEFIDPHWEPILQTPPFPEYTSGHSAISGAAATVLSGLYGADSGFHDTTQLRFGLE
                     ERSFTKFMDAAYQVNLSRFYGGIHYKPGVEEGGKQGAHIGQLILNRFIN"
     gene            complement(14156..14941)
                     /locus_tag="DHV98_00225"
     CDS             complement(14156..14941)
                     /locus_tag="DHV98_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001294989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HCK04835.1"
                     /translation="MAAEQTLVLREDQTGTCLLTINRPDKLNALNRETIQVLNQTLTQ
                     ALSDKDIRVILITGQGEKAFVAGADIAEFAHFDAAQGKALAADGQRLLFDLVANATKP
                     IIAVINGYALGGGLELAMAAHMRLASTTAKMGLPETSLGLIPGYGGTQRLAQLIGKGR
                     ALELICTAGMIDAQRAYEIGLVNHIFPTEELMQGAHKLADSIKKTAPTAVAQAIGAVN
                     VGLDPSAGLNAEIKAFGACFATEDFKEGTQAFLEKRKAQFPGR"
     gene            complement(14984..>15750)
                     /locus_tag="DHV98_00230"
     CDS             complement(14984..>15750)
                     /locus_tag="DHV98_00230"
                     /inference="COORDINATES: protein motif:HMM:PF02518.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HCK04836.1"
                     /translation="QKIDVASNVSSEISRLVEAYNNMIEALEQSAVQLAQGEREAAWR
                     EMAKQVAHEIKNPLTPMRLSVQSFERKFDPQDPDIRNNISEFSATLIQQIDTMSDIAS
                     AFATYAKLPEQNVVTVELAETIRRTIEVFDAPFIKFSGPDHGVTFGFDKNQLNRIVTN
                     LIKNSLQSLQQNHTPNPEIKISLEDNESLVILRVEDNGPGISKELRSRVFEPKFTTKT
                     KGMGLGLAMVKTIVLSYGGRIEIFEPXGFVMQFPKA"
BASE COUNT         4215 a         3280 c         3170 g         4380 t
ORIGIN      
        1 gccatcattt ctgatggctt gtccattatc gctcctcctc ttgggctcga accaaggacc
       61 ctctgattaa cagtcagatg ctctaaccaa ctgagctaag gaggaatatg cattgccttt
      121 tcctattaag tgaaggcggg tgcaaatata gattattttt tatctgagac aaaaatctag
      181 atttattttt ttagccaaaa atccaacgca ccaaatcgtt tccattagca aagagtacaa
      241 gcccgatcaa aaggaagaat ccgaccatct gggcatactc cataaacttg tcgttgggct
      301 tcttacccga taccatttca taaagcaaaa acatcacatg tcccccgtct aaggccggaa
      361 taggcaagat attcataaag gccaatataa tggagatcag cgctgtagtt tgccaaaagc
      421 tcagccaatc ccattgtccg ggaaacatat tgccaatggc accaaatccg cctacttgag
      481 tggccccttt tttagtaaag acatatttga attgcttgac ataatcggtc aaaatgccca
      541 caccataaga agtccctgag gaaaggcttt ctccaagaga aaaactaagg tgggtgcctc
      601 gattgagcca ttgacggcca aagttattca gtcccagctg tcccgtctcc gcagtggcaa
      661 tcattagggt gtcacgcacg ccgtcacgct cataaactaa agtattttcc gcgcctggtg
      721 ttttatttat ggccttgtta aattcatgcc aatgggtcac ctcagtacca tttgtattta
      781 gaatcagatc tcctttttgt aatcctgcaa gtcctgccgg aaaatcggcg aaaaccgtgt
      841 cgatttgatt gttgcgcatg tactcaaatg gcttgagtac gtcttgttga aacatcagag
      901 tgccgatatc tgtcggcagt tcaatacgtt cgataccccc ttctctgtgg cgtaccgtaa
      961 gactgcgcac ttcttttaaa aaaagtgatt tattaagttc gttttgataa tcaaagggct
     1021 cgtcgttgag ctcaagaacc aaatcgccat cgcgaaagcc gtactcttga aaaatctcgt
     1081 ggaccacaaa cccttcgggc atatcatctg cagtgatcac gtcgcggccg tagaaaaaca
     1141 ggatgctgat atagatgacc aacccaacga taatgttgac cgttactcct ccgagcataa
     1201 taatgagtct ttgccaggcc ggtttactgc gaaactccca cggctgcggt ggtcctgcca
     1261 tttgctcttt gtccatagat tcgtcgatca tcccagcgat tttcacatag ccgccaaggg
     1321 gtaaccatcc tatcccgtat actgtttcac caatcttctt tttgaacaat gagtatttga
     1381 catcaaaaaa caagtaaaat ttttctaccc gtgttttaaa taatttggcg ggaataaaat
     1441 gtcccaactc gtgcaagacg atgagcagcg agaggcttaa taacagctga agtgctttta
     1501 cagcaaatgg actcataatt tgatttgtta aaggacaaaa gtaacgcatt aagggaggta
     1561 aaaaaaatat atccactttg gcagggtcag tattataaaa cttttaacgc ctgaacttgg
     1621 aaactgccat ttcgggggct tacctttgtt cttattttca aaaaatgctg aagtttttcg
     1681 caaaatataa gacgcttgct ttggttatgt ccattctatc tgtgatcata atcagtgcga
     1741 tctacaatgc cttagcgcct gagccgcaat tacgtatata tcagcccaat gatgtcgccc
     1801 ctgaattggt ggacacaacc ctacaacacg tcaagaaata ccatcaaatc gctgattttt
     1861 cgttggtcaa tcagttaggc gatacgatta cccaaaagac atttgaagga cggatttatg
     1921 tcgccgattt tttctttact acttgcgcca cgatttgtcc gattatgacc cagcacatgg
     1981 gagaaattca aaagaatatc aaaaatgacc ccgatatttt actgctgtcg cataccgtta
     2041 cacccgaaat agacacggta gcccaacttc aaagatatgc ccaaaaaaag ggggtcattc
     2101 cgggtaagtg gcatctggtt acgggcgata aaaaagaaat atacgacctg gcgcgcaagt
     2161 cctatttggt cgccaaagac caaccttata gtccgtatga tttggttcac acagaaaact
     2221 ttgttttgat tgacacccaa agacgcatac gcggttttta tgacggcacc gatccggagg
     2281 ctatagcatc gcttttagag gatataagca ttcttaaaaa agaaggacaa tagtcatttt
     2341 ttaagcccaa taaattccct acatttgcat tgtttaaaat gaatctaaat aagggaatgg
     2401 ccacaatcgc aggcatgcaa aagggacaaa aaggcattat tcgtgatgtc gatctagacc
     2461 gaattccgct caagcttctt gagatgggtt gcttgccagg aaatgaggtt accttgattc
     2521 aggtcgcccc atttaacgac ccgctctatt tagacattaa tggctcacat ttagccattc
     2581 gtaaggatgt tgcggcacaa atttatatcg atctctgtta atccatggcc caacaaatcc
     2641 aagtcgcttt attggggaac ccgaatacag gaaaaacttc cgtgttcaat cggcttacgg
     2701 gactcaatca aaaagtaggg aactaccctg gaattaccgt agagaagaaa gaaggggttt
     2761 gcaatctttc tcgcggtaaa aaggcgcata ttttagattt gccgggaacc tatagcctca
     2821 acgcttcatc gattgacgaa aatcaagtca ttgaattact gctcaataaa aacgacaaag
     2881 attannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3121 nnnnnnnnnn nnnnnnnnnn nnnccgacga ttttggccat aaacatggcg gatcgcatga
     3181 ccagaaaagc catctcctta gatattccgg ctttagaaaa ggccttacat acgaaaattg
     3241 tcctgcttag tgcgcggaat aatgaaggat ttgaagcctt gaaaactcaa atcgagcaat
     3301 ttaaaaactt gcccatgacc ccgtgtttag acaccacggt gattgcgcca gagtattttg
     3361 atcgtttggc taagacttat cccgctcaag atttatataa actttggctc nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nggtgtatca ggaccaataa
     3661 gttttcaaac cgaatcgata agcactttaa aacgtttaca gcaaaaagaa accatcaagc
     3721 gctatcaatt tatcaatgac acgctcaaaa cgaccatgac ggttaatgtg gcaatggcca
     3781 aagatttcag aagtcgtctc gatcgggttt tgacccatca tgtctggggc tatgtgatct
     3841 tttttgcggt attgacggtg atttttcaag ccatatttga ttggagtagc tatcccatgg
     3901 attttattga ccaaacattt gcacaaatgg gagagtgggt caagcagaat ttgcctaaag
     3961 gagatttcac gagtctgctg gcggagggtg tattgcccgg cctagggggt ataataatct
     4021 tcatcccaca aatcgccttt ttatttttgt tcattgccat actcgaagaa acaggatata
     4081 tgagccgtgt ggtcttttta atggaccggg ttatgcgtcg gtttggcttg agcggaaaaa
     4141 gtgttgttcc gttgatttca ggaaccgcat gtgccatccc cgccattatg gcgacccgaa
     4201 atattgaaaa ctggaaggaa cggttgatta ctattttggt aacaccattt accacctgtt
     4261 ctgcccgtct gcccgtctac ttgattatca tttcattgat tattccgcag caaagagtct
     4321 tgggcctttt ttcactgcaa ggactaacct tnntgacctt cttgtatttt ttaggttttg
     4381 cctcggccat attcgccgca tttttactcg atcgattcct caaagtaccg tcacgctcat
     4441 tttttgttat tgaaatgccg aactacaagc tcccaatggc caaaaatgtt ttaattacca
     4501 tggtagaaaa aacaaagtcc tttgtttttg gtgcgggaaa aataattttc gccatttcta
     4561 tagtcctctg ggttttggcc tcatatggac caggagaatt taatcacgcc cccgagatta
     4621 tcgatcaacg aaatccagac aatacgctaa gtgttgcagc gcgcaacgcc gcaattgagt
     4681 cctttcaatt agaacattct tatatcggaa taatgggcaa agccattgaa ccgatcgtga
     4741 gcccgctggg ttatgactgg aaaataggga ttgcgattgt cagttcgttt gccgctcgtg
     4801 aagtatttgt ggggacattg gccacaattt acagcgtagg caatgacgat gagcaaacca
     4861 tacgcaatag gatggcggct gaagttcatc cactgcttgg taccccgcga tttaattttg
     4921 cgagcggcgt ttcgttgctg ttgttttatg cttttgccat gcaatgcatg agtactttgg
     4981 ctgtggtacg caaagaaacc aatagctggg tgtggcctgc aggacagttg atatttatga
     5041 ctaccttagc ctatgtcgtg gcattcatca cgtatcaaat cttaaactaa tggacttcca
     5101 aaaagtactt gttggcctca cctttttagc cgcattgtta tttttactgc gcaagtttat
     5161 ttggattccg atcacggatt cacgcaaaaa atcactgggc acactagacg gaggaaaaac
     5221 aaaatgtggt tcagacgatt gtcagtgtca ttaacccaag cccacatcta aagtcatcat
     5281 catgataaaa ccaccgataa aacccatcgt ggcaatatcg gtatttttgt ccatctgagt
     5341 ttcaggaatg acttcttcaa taaccacaaa aatcatagcg cctgccgcaa aggctaaggc
     5401 gtagggaaga atgggttgaa acgttaaaac ggcccaagcg cccagaacgg caaaaatagg
     5461 ttcaacaagg gctgaggctt gtccaaacat aaaactcttt tttcggctta ccccagttct
     5521 cctcaggggc atcgctacgg caataccttc ggggaaattc tgtaacccga tccctagagc
     5581 taaagcaact gcggcactga tagacgcgcc atcaaaacca gcagcaaccc ctccgaacaa
     5641 aacgcccacg gccagacctt ctggaatatt gtgaagggta atggccaatg ttaagagtgt
     5701 cgtccgatgc catggggttt tgagaccttc actttgactg tctttaaagt taatgtgaac
     5761 atgaggtaag attttgtcca ggccaaaaat aaatagcgcg cccaaaaaaa atccgatggc
     5821 cgatggccat accttatcaa atccttcacc cgggctcatc tcgatgcctg gtgcgagcaa
     5881 actccaaaaa ctcgccgcga ccataacgcc cccggtaaat cccagcatcc cgtccaggac
     5941 ggcacgattc attgatttaa aaaagaagac aaatgaggcg cccaaagcgg taagccccca
     6001 agtaaatagt ccagcatata aggcggccat gactgggtcg atctgttcga gatatgcaat
     6061 cacactgtcc ataggttcta tcgattaaga ttttatgttc gaattatttt ttattagcgc
     6121 gtcactcaaa tcaaatttgg ctcgatataa aaattctgtt gcgttaatag gcaaacttat
     6181 aactcaggcc agcactcaaa agtagatctt gaccctcagt aatgctgcgc ccgaacgtaa
     6241 tgtcatattg tagattccat cctgctaaat acgtaaaccc agcatcccaa taatgattcg
     6301 ccgcagaatg ttcaggggcg tccccataga gctctacata ggcaccaata tgattgctta
     6361 gggcataacc gtaggccaca gtgtaaacaa aagccattcc ggtatggtca ccagaccact
     6421 gaccgcctaa attataagca attcctgacc gatccgagag ctcgtggccc actgaaaatc
     6481 gaaaatctgc accagttgtt tgagattcgg gagtcatgcc ttcgggggta ctggtgctaa
     6541 atgggaggta gagatgtcct aaaaatccaa agtctgttcc ggagcggcct tcgaaaagat
     6601 ttattttgat ccctgccagc attggggtga agcttttaaa gtccgaagaa acttctgtgg
     6661 cgcccatttt agaggtcaac cgattgtcct cataattaac ccccagacgt aattcgagat
     6721 tttcgagcag tccgatgcgc gcgagggtcg tgttgtaacc caaagtttct gcggtggtgc
     6781 cgttttcttc aaatcgcgtg taataggcac cggtctcgat ttgaataaac ccaggttcaa
     6841 ccgtatttgg cgactctgtg gcatccgggc gatcggttat gatgctgtgg tcagtcgtcg
     6901 tctcaggact attctctaga ggagttcctt ggggcgtttt agagggattt gtctgttgcg
     6961 ccactgccgt agccgaccca ataaggaata gagatagggt taatatttta acgaggctgt
     7021 acataaatat tggttgaaat tatttttgat ataaaatggg ttttttggtc aatgactaca
     7081 gtcatggatt catcaaacgg ctctttgtca aggactgtga ttaaactccg nnnnnnnnnn
     7141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnntaaact ccctaattta
     7201 atattttttt gactcagata ttttaagaag gcatcatccg tatcctttat acccatgaga
     7261 acacatcgac tatttggctc ttgttcacag agtaggattt tattgatttg ctcgatattg
     7321 cctttgtcat ctgggatagg gtctccgtgg ggatcgacct tgggacaacc taaaaacgca
     7381 tcaagccgtt cgacaagatc gggactcttg atgtgttcta attgttctgc aatatcgtgt
     7441 acctgatccc agccaaaagc gagtttctca acaagaaaca cctcccagag tctgtgtttg
     7501 cgtacaattt ggctggcaat atgtcgcccc tcggggctaa gctgcgcgcc tttgtatcgg
     7561 gtatatttaa ccatggactt gtcatggagt ttttgcaaca tgtccgtggc agaagagggc
     7621 ttggtctcta agcgttcagc cagggcagtg gtgctcacgc gctggttctt accagcggat
     7681 agctgataca tagctttgag gtagttttct tcggcacgcg tcattataag gcaaatataa
     7741 ataaattttt agacaagact aaaattacag ttaaagaaat aagtaaatac gatcgaattt
     7801 taaatataaa ttgaaataaa aacagcaggt aaaatgtgtc gttatggcga tttatttacg
     7861 ataaatgctt aaaaagcaga atattttatc aaaaatgacc caaaaacact attttttgga
     7921 ctaaagtcgt attgggataa aatttagaag ccgcgctctt tttgaatgcg ctcataagcc
     7981 tgttgaacgg cacggaattt ttcttcagcc cctttgcgat aggcttcatc catatcttga
     8041 agcttatccg gatggtattt ctttaccata gtgcggtagg cttttttaat gtcagaaacc
     8101 gaggccgttt tagggacctc aagtatctcg tatgcacgat ctgggttgtc aaaaaacatg
     8161 gcctttatac tgccaaaatc ctggaggtta atggagaacg cccgggctat gttttcgagt
     8221 tgtgtcacct ctgattccga aacaagaccg tctgcattgg ctacgctaaa gagaaagtga
     8281 agtacttgta gtcgtgtttc ataggtcaaa acacgcttta gttccagggc aattgcgctg
     8341 cctgaaacgc cagatttctt tatttcttca ttaaatagtc gaaaggttgt gttagcgcgc
     8401 tcttttccat aagcctgcac aaagtagcgg cgcacaaaat cgagttcgct ttgttctacc
     8461 tttccatcgg cttttatcac gaccgaagcc aaggccaaaa gtttaagttc aaactcggca
     8521 gggatatttt gtcttgtggg gcgtccaaag gagccgcctc gtccgggata aattttaccc
     8581 gcattcatat tgtcgatgat attcccgata ataaatccca atatagcccc cggccagcgg
     8641 aagtatacca taccaagaat acctaaaaac caacggatca tagtcgaaaa agagcagttt
     8701 tacaagccac caaagatagg aatttcgaac atataagaga ttccttatct gtatagggga
     8761 ctctgctgat ttgatgaggt cagaagtgat ttattaatta tctttgacac aaaattgtta
     8821 cacagaaaaa atccaaaata tgtatccagc tgaaattgtt aagccaatgc gtgaagactt
     8881 aagtcttttc gggtttaaag agttatttac tgccgatgag gttcatgcgg ccattgatca
     8941 agaaggcact gttttagtcg tggtgaattc cgtttgtggt tgtgctgctg ccaatgcgcg
     9001 tcctggggca aaaatgtctt taatgaacga taaaaagccc gatcatttga cgactgtatt
     9061 cgcaggagta gattttgaag ccgttgatgc agcgcgtgct gctatggttc cttttccgcc
     9121 ctcttcgccg tcaatcgctt tgtttaaaga cggggaatta gtgcatatgt tagagcgaca
     9181 ccacatcgaa gggcgcagtg ccgaaatgat cgcggctaac ctaaaaagtg ctttcgacga
     9241 attctgttaa gtcttaggtc gaggtttgag gattaccgct cagttcgcct tattgttgcc
     9301 aaataaacta aactgctcgt tatttctaat gacgagcagt ttttgttcgc cgtctatagt
     9361 gatcggtttt aaatgtctta aatttccatc taacatcagt cctgtgtcct tagccggaat
     9421 cacatcgaaa tgagttccat tccattttag agctgttcct atggaggcgt catagcgact
     9481 gaactctgca tcagtcccgt aataattacc cccgacaatg acttcagttg tgccatcccc
     9541 gtctaaatcc catgaaatgg cagtatttaa aactgaccat tgtgtttcaa agggtaagga
     9601 ttgcgtctca aatccccctt ttccattatt gataaacacc gtatgctcaa aattatttgc
     9661 ctcgaggtac cccgcatctt ttaactcagc ctcggtaaat atatcctcga ttttcgcccg
     9721 ggcatagggg gcataacgcg taaaacgctt tttcaaaaac accatatgat ttaataatcg
     9781 atctcgattt aaaataggat aactttcccc ttcgacataa gtacaaagaa tggggtcgat
     9841 acttttgttg ttgtcgaaat ccttataata aagggttgta ggttctttgg cagaggcctt
     9901 gaaaattgaa ttcaatccta aattacccgc gataaggtcc tgataaccgt ccccattcac
     9961 atccatcgca gagacagaat gccaccaacc gatattttta tccagaccat acgacgatgt
    10021 ttgatcagcc cactttccat tttcaagtcc taaaattgtt atgggcatcc actcaccaga
    10081 caagactaat tcaggagtgc catcattgtt taaatcggta aaaacggcat cattgatcat
    10141 cccaatagat gaattttcag aaaaccaatt gttggattga tctgtaaatt ggccattgtt
    10201 attctcaaga agtgtacttt ggggcatttc aggataacgg cctggggtga catagctgcc
    10261 tacaaataaa tcgacatccc catctctatc atgatcaaaa ggcaccacta cgccgcccga
    10321 atgataaact gagggtatgg cctttttgtc ccgcacgaag tttcctgtcc catcgttgat
    10381 ataaagtcga tcttgtaagc gaacatcgtt taagggaaat tcattgcctc cactaacgac
    10441 ataaagatcc atatcgccat cgccatcggc atcaaaaaat agggcgtcta catcttcact
    10501 ggctttgtcg gcttcaaaaa cagtggannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10561 nnnnnnnnnn nnnnnnnnnn nnnnnnncgg cttcaaaaac agtggatgat ttttgccatc
    10621 ggcctccagg tttttgaatc ataagacgac cactttcgta ggccgccccc ccgatgtaaa
    10681 tatcctccag accatccttg ttgacatcgc ctacggcagc agcagggcct tgatcgctga
    10741 gttttttgtg taataggagt tgtcccttaa agtcgataaa tgcattttca gtgtgactga
    10801 attcttcagt gatcaaatta ttttgctggg taaaataagt tgattttttg tcgcgtcctt
    10861 tgcccgtgat ttgcgctaaa tttgggtttt tacttacagt caatatagaa tccaatggta
    10921 aatcggtcca tctttgacgg gtttgatcag gccaagtaat ttcgagcgct atgggtttta
    10981 gatccgctcc taaaccaaaa tgtaatttgt gttgggatga ggaataaaaa cctctggtag
    11041 gttgataact ttcataaagt gaagctccat tgtcaagaat taattcagcc ttacatccat
    11101 aagcaaaggg taatgattca ttatcaaata caattgataa ccagtgattt gcgtaatttt
    11161 tttcgcccga gtttttcatg ataaatggcg ctgcgtttac attatttaca accaaatcaa
    11221 tgtatccatc gttatttaag tctgaatagg cagaaccact agagaaagct tcaggcccgc
    11281 tattccagtc ggcactttta tcctcgaatc ttaattctcc cttattgcgg aataagaatg
    11341 atcgtacagg atcacttggt atgaattgaa tccactccaa cagactcaat tctttggcag
    11401 ccatcctcct ctttaaacca tcaaattcgt actggcgata atcattgttt gtgatgtctc
    11461 ggacatatcc gttggttata tgaatgtctt tatttccatc attgtcaaaa tctgctaaca
    11521 aaacactcca gctccattcg gtttgagcga ccaaatccac aaaggataaa tcagaaaatt
    11581 taccatttcc tctattaatt tgcatcgaat ttatggggaa ttgagcgcnn nnnnnnnnnn
    11641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11701 nnnnnnnnnn nnnnnnnnnn nnnnncactt caaatttgtc atagttctgg gccatagaca
    11761 tcatcttcct acgaaagtta ttttttggag acatatctaa agtgaacaag tcaaaccctc
    11821 catcattatt tacatccgca taatcggaac ccattgatga gaaggaagta tgggagaaat
    11881 agtctgtcca cttatcaata aaagtgtggt ttccttggtt aatcaataat tggtcagggc
    11941 ctatgtaatc attacatatg tataaatcag gcagatggtc ttcgttaaaa tcggctacaa
    12001 ctgcgctgtg actaaatgag ttgttgagta tcccagcgct ttcggatttt tcaacaaact
    12061 tgccattaac attttcataa taccgatcag aaatatattg ataacccatt ggtaaggcgc
    12121 gcttaagttc gccattgtta tctcgcatta aattaatggc attagactct ttccaatcat
    12181 tagggtgatt gattaaatac aagtctagat ctccatccaa atcggaatct agaaaatagc
    12241 cttgcgctga gtaactctca tcatcaatgc catacacact gcccatttcg gtaaaggtca
    12301 aatcaccatt attgatgtaa agaacattag cacgcattct aggcgaggca agagcggagc
    12361 gacaaacata aatatccaag aatccgtctt ggttgatgtc tataattgaa accccagttt
    12421 taaaaccgcc ctcacccgat actccagcaa aatcagtgat gtctttgaat tcaaaatttc
    12481 cctgatttaa atagagttta tttgacgcag tgttgcctga gaaatagagg tcatcaagcc
    12541 cgtcattatt gatatctcct actgaaacgc caccgccatt atacagattt tcgtaaagca
    12601 ggatgttaaa cttttcattt tcaccgattt gattaacgaa atctatattc gttacttctg
    12661 gtcctaaaaa ttcaaaaagt ggcggcactg catcactatt tgaatgttcc tcttgatcat
    12721 tacaggcaat taatgtcaag gccaagaaaa taaatatacg tgtttggttg aacatgagtt
    12781 aattgataaa tcgattcaaa atgagttgtc cgatatgggc gccttgtttg ccgccctctt
    12841 caacccctgg tttgtagtgg atacctccat aaaaacgact cagattgacc tgatatgcag
    12901 cgtccataaa ttttgtaaag ctgcgctctt caagtccaaa tctgagttgg gttgtatcgt
    12961 gaaatccact gtctgcgcca tataatccag aaagtacggt ggctgctgct ccagaaattg
    13021 cactatgacc actggtgtat tcaggaaaag ggggggtttg taaaatcggt tcccaatgag
    13081 gatcaataaa ttcttggata tacgttatcg gtctgaccaa atcagtcttg aacttgtagt
    13141 gccatacggc aataatggca tcaaacattg ccgtagcgac gtaggtgtag gcttgagtcg
    13201 cttttgcata gtctgaattg ttctgctcgg tcacttgggt tacgatgttg agccaatgcc
    13261 caggagggct gtatttgtga atggtttgaa tcatatgccc ttggtggatg gtcagtaccg
    13321 ggttacaatc ccaaaaccag gcgatttttt ctttctcctc atttcgtgat tcggcataaa
    13381 cctcatggac catagcataa aaatcagaat ttttatcggt gctgtactca gggagtggtc
    13441 ggggctcata aatactgaga ctgtcaatga caagcggtct tatgtggtcc caataaggct
    13501 ctagtgctga ctcataatca ggcggggttt cacgccaatt ctgaggtttt tttgtgctcg
    13561 taaaacgggg atacgtgcgt gtttggatat attgatcttg gtctacccat tgagctaact
    13621 gttcatggat accacgggca aattcccgcg attgttcaat ctcatgatcc gtgaagttat
    13681 tttttttggc ccgttggata agtactgagt ctaagtccac aaaaaattgc tcggaataaa
    13741 tgagtttttt acccatttta gaaaaggcaa atagggctgc gagttgagga tcaacgcctt
    13801 gtttatcggg tagttgaaat tcttctagtc catggatgtg ctgtgtaatc tcaggcaatg
    13861 attcttttga cgccccttga aagctaatgt agtgcgccaa gtggctatag gcaaatattc
    13921 tactggccac aggcggcgtg aatacatccg ccattgcagc atctaataaa acagtattgg
    13981 cgtagttgag gtctgctctg ctaagattaa ttttttctgg ggcactgcac ccattcatta
    14041 aaaaccccaa aaggcataac ccaaagacaa tgttcttgcc gctcattttt ttttctttta
    14101 acatggttga aacgttatca aataattctg taaatgaata agtcaagttc aaatattatc
    14161 gtcccggaaa ttgcgctttt cttttttcca aaaaggcctg agtcccttct ttaaaatctt
    14221 cagtggcaaa acaagcgcca aaggccttaa tctctgcatt gaggccagcg gagggatcta
    14281 gaccgacatt taccgcccca atagcttgtg caacagctgt tggggctgtt ttcttgatgg
    14341 agtcggcaag tttgtgggcg ccttgcatta attcttctgt tgggaaaata tgattcacga
    14401 gtcctatctc gtaggctctt tgcgcatcga tcattcctgc agtacaaatg agctctagcg
    14461 cgcgaccttt accgatgagc tgagccagcc tttgagttcc tccataacct gggatgagtc
    14521 cgagtgaagt ttcaggtaac cccattttgg ccgttgtact cgccagccgc atatgcgctg
    14581 ccatggccaa ttctaatcca ccgccaaggg cgtaaccatt gattacagca attatcggtt
    14641 tagtggcgtt ggccaccaaa tcaaataata gcctttggcc gtccgctgct agggcttttc
    14701 cttgagcggc gtcaaaatgg gcaaattctg cgatatcagc cccggcgaca aaggcttttt
    14761 ctccctgtcc tgtgattaag attactcgga tgtccttatc ggatagggct tgagtgaggg
    14821 tctgatttaa tacttgaatg gtttcccgat taagggcgtt gagtttgtcc ggacgattaa
    14881 tcgttaatag acaagttcca gtttgatctt ctcttaatac gagggtttgc tctgcggcca
    14941 taaggtttta ataagtactt caggcttaaa ggtattaaat aattcatgct ttcggaaact
    15001 gcatgacaaa accnncgggt tcaaaaattt caatgcgccc gccataagaa agcacaatgg
    15061 ttttaaccat agcgagtcca aggcccatgc ctttagtttt tgtggtaaac ttaggttcaa
    15121 aaacacgact tcttaactcc tttgaaattc cagggccatt atcttcgacg cgcagaataa
    15181 ccaaactttc gttatcctct aggctaattt taatttctgg attgggcgta tgattttgtt
    15241 gcaaagactg aaggctattt ttgatcaaat tggtcacaat tcgattgagt tgatttttgt
    15301 caaagccgaa ggttacgcca tggtctggcc ccgaaaattt aatgaatggg gcgtcaaaaa
    15361 cttcaatagt ccgccgtatg gtttccgcta attcaaccgt aacgacattt tgctcgggta
    15421 acttggcgta ggtagcaaaa gccgacgcga tgtcactcat ggtgtctatt tgttgtataa
    15481 gtgtggcgct aaattcagaa atattattgc gaatatccgg gtcttgaggg tcaaatttgc
    15541 gctcaaagct ttggacactt aagcgcattg gtgtcagtgg gtttttaatt tcgtgcgcga
    15601 cttgttttgc catttcacgc catgccgcct cacgttctcc ttgagcgagt tgaaccgcac
    15661 tttgttcgag cgcctcaatc atattattat aggcctcgac taatcggctg atttcacttg
    15721 agacattgga ggctacatca attttttgat
//
LOCUS       DPUP01000006           10328 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2953,
            whole genome shotgun sequence.
ACCESSION   DPUP01000006 DPUP01000000
VERSION     DPUP01000006.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10328)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10328)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10328
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1289)
                     /locus_tag="DHV98_00235"
     CDS             complement(<1..>1289)
                     /locus_tag="DHV98_00235"
                     /inference="COORDINATES: protein motif:HMM:PF02128.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCK04837.1"
                     /translation="SIKKNPSMKKLLLVFLGGLFSINAALAQDDLNIIKDYLSSQRSA
                     LNLTQEDVNSPVLKSTSYSKSMHVQMAYVNQSLAGIEVHNSTSRFAIKDQQVYSARLG
                     FVSNLASKINTTSPSIGAQSAVLKAAQSFGLSAGNIEELSGQGNTYVFRAADVSQNDI
                     PVQLVFQKTQDEQYRLAWDLSIYLLDATHYYSVRVDAQSGAILDTHDWVLHCDFGQGS
                     HEHSSGESVLFGAESTAIAPVAGAAGYRVFPIPFSSPIDGTDEFIFESDAVDAASSPF
                     GWHDTDGTAGAEYTYTRGNNVYAQEDIDGNNGNGASPEGGTGLTFDFPYNLPQDPSNF
                     TDAATVNLFYWNNLIHDFTYPYGFDEESGNFQENNYGNPGNGSDSVNADAQDGSGTNN
                     ANFATPPDGANPRMQMFIWTSSSGPINLLTINNGTLA"
     assembly_gap    1290..1363
                     /estimated_length=74
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1431..>2455)
                     /locus_tag="DHV98_00240"
     CDS             complement(1431..>2455)
                     /locus_tag="DHV98_00240"
                     /inference="COORDINATES: protein motif:HMM:TIGR01353"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCK04838.1"
                     /translation="FGAVVAAAALAHDIGNPPFGHSGEKAIGDFFKTGSGRVYASDMT
                     PEEYQDLCDFEGNANGFKMLTQTRDGVEGGLRLSYATLGAFMKYPKGSLPKKPSPHCA
                     DKKYGYFSGDQSFFEEVAQELGLIKLGLGRFTRHPLAYLVEAADDICYTIIDFEDGIN
                     LGWISEDVALEFLLRLVKDSIQTEKYSQLTKSSDRLAYLRSLAISRLIQEASALFLAH
                     EDLLLTGKMEQSIMSQSQFKAQINDILRVSKERVYEHPEVLRKELAGHRMLTDILSAY
                     APAAINTKNQSPTFFDQLLIQESGLEIHPQHTVYEVLLEISHFVSRLTDSNALALSSR
                     LGGKVV"
     assembly_gap    2456..2572
                     /estimated_length=117
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2573..2897)
                     /locus_tag="DHV98_00245"
     CDS             complement(<2573..2897)
                     /locus_tag="DHV98_00245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HCK04839.1"
                     /translation="MTWEQLMSLKRQGDQHKRLRIEQDETRLGFEVDYDRIIFSSHFR
                     SLQDKTQVIPLSKNSFVHTRLTHSLEVSVVGRSLGRAVGRALLERHPHLSSIHGYQPN
                     DFGAVV"
     gene            3074..>3833
                     /locus_tag="DHV98_00250"
     CDS             3074..>3833
                     /locus_tag="DHV98_00250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK04840.1"
                     /translation="MRKIFITTLFSLMSLIAVGQTTGSIVGLLTDKEFNNEPLAFANV
                     IIKGQNTGTTSDFDGLYALEDLPVGSYTIVYSFVGYETVEVDNIIVEEDKVTTVNVPM
                     GASAATLEEVVITTTVRKESEVALLLEQKNAVTQKTAIGAQELSRKGVGDAATALSKV
                     TGISKQEEGSGNIFVRGLGDRYNVTTLNGLPLPSDDPSRKNINLSIFSTNIVENIGID
                     KTFNPEQYADFAGANINIDSKNAMANGIISVSLDS"
     assembly_gap    3834..3904
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3905..>4732
                     /locus_tag="DHV98_00255"
     CDS             <3905..>4732
                     /locus_tag="DHV98_00255"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK04841.1"
                     /translation="QDQFYRTDGPDNFGFYDINYPAFALNNYNFETSWDRRTADAPAN
                     LGLTIQGGDSFQIGEDTKLTVFGVGAHSNQYQYREGISRGGVEVSSVPNADFDYVSYE
                     YSTNTTLMGDVGIKHKNLNINYSGLVLNTSNEQQLENFGVIDKDDDASQGGGFIQRAV
                     FTRTNLIVNQLHADYKVSDRINVNASGSYSFLHSAEPNRRQVTLVPQDLDEPDGPKSF
                     EFVSAASSNHRFYADLYEEEIATAFETSIKLFKNDQDEFDGNLALGFSSRDKEVDFS"
     assembly_gap    4733..4789
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4790..6035
                     /locus_tag="DHV98_00260"
     CDS             <4790..6035
                     /locus_tag="DHV98_00260"
                     /inference="COORDINATES: protein motif:HMM:PF14905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK04842.1"
                     /translation="DFSATQFNFRINRGAGIVQPIVENIYDVDAYFNQDNLNAGLFRI
                     ETFRGSADVANALDPQTYGGTQSILAGYANFSYTFNPKFTMIVGLRGEQINQDIEWST
                     SLDPDGDSNSLDEFQLLPALSMKYTLTEDQNFKFAASKTYTLPQYKERAPFLFQEVNQ
                     DYFGNPFLSASTNYNIDAKWELFPSNSELLSIGLFAKIIQNPINTVTIQSAANDISWA
                     NTGDQATALGIEVESRKVLMSRETEYADFTNTQKLTAGLNLAFMDTNQDLNGEKVFQE
                     AGLSFDPTYSSTGITGASDLVANADISFYKDFKEHKNVLITLAANYFSDRIFALGNFG
                     KGNIVEKGVPTLDFVAKSQITKQLSIGLSAKNLLNPSIERFQEAVDGDVNPIRDRIQE
                     QATTVLSFKRGYDLKISLNYIF"
     gene            6083..7276
                     /locus_tag="DHV98_00265"
                     /pseudo
     CDS             6083..7276
                     /locus_tag="DHV98_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867127.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing stop; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    7717..7820
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <7821..8363
                     /locus_tag="DHV98_00270"
     CDS             <7821..8363
                     /locus_tag="DHV98_00270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04843.1"
                     /translation="SYQGGDDGIEFFGGTVSGDYLVSIGSGDDSIDFADGWQGNGSFW
                     YIKDGAKAGIEGSNNGDDGNASPVTTTTLSNITVVGPVTEGALYFKEGGGSFTITNFY
                     TDAIDLGVKVKDTDAEAAVRIENGDLSINPMQFDNPAAGFEITDYIGANQSFVVEGPT
                     SGAGNGAAAPSWASGWTSGL"
     gene            complement(8465..8833)
                     /locus_tag="DHV98_00275"
     CDS             complement(8465..8833)
                     /locus_tag="DHV98_00275"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinic acid mononucleotide adenyltransferase"
                     /protein_id="HCK04844.1"
                     /translation="MKNLTLTIALSMLLTVVNAQSEHKNSFVIEGEQIIAKFYHDNGT
                     VAQTGTYNLTNKLHGLWTSYNDKGEKQSQGQYFNGKKVGLWSFYNNDRLILVEYDTSK
                     IAQVTHLEMNDQTVVTRYDK"
     gene            9213..>10328
                     /locus_tag="DHV98_00280"
     CDS             9213..>10328
                     /locus_tag="DHV98_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate:sodium symporter"
                     /protein_id="HCK04845.1"
                     /translation="METTYIFLLVVLALLAITDLIVGVSNDAVNFLNSAIGSKAISFR
                     TIMIIVSVGIFLGAVFSSGMMEVARKGIFVPSQFYFDEIMIIFLAVMITDILLLDFFN
                     TLGMPTSTTVSIVFELLGAAVIISALKILVEQNGSITEITQYINTTKATEIIVGILLS
                     VFIAFIVGAIVQWISRLIFTFQYNNKMKALGSIFGGLALASIFYFILYKGLKGTPYYD
                     SYKNTLDEQLWVILFVITLSCTLFSFVFTNVFKKNILVVVVGAGTFGLALAFAGNDLV
                     NFIGVPLAAYHSFEAWSSSGVIPSEFSMVVLEQKVPAESLILLFSGGIMVLTLWFSKK
                     AKTVTETTINLSRQGDGYEKFKPNLVARYLVRSGVWLG"
BASE COUNT         2795 a         2140 c         2161 g         2809 t
ORIGIN      
        1 ggcaagtgtt ccattgttga tggtcaataa gttaatcggc cctgatgaac tggtccaaat
       61 aaacatttgc atgcgtggat ttgctccatc tggaggcgtc gcaaaattag cattgttcgt
      121 tccagaaccg tcttgggcat ctgcattgac agaatcagag ccattccctg gattaccata
      181 gttgttttct tggaagtttc cactttcttc gtcaaaacca tacggataag taaaatcatg
      241 aataagattg ttccaataga acaggtttac tgttgccgca tcggtgaaat tggacgggtc
      301 ttgtggtagg ttataaggaa aatcaaaggt tagaccggtg ccgccttctg gtgaagcacc
      361 atttccgtta ttcccatcga tatcttcttg agcatacaca ttgtttccac gagtgtaggt
      421 atattctgca cctgctgtcc cgtcagtgtc atgccaacca aatggcgatg aggctgcatc
      481 cacagcatca gattcaaaaa taaattcatc cgtcccatcg attggactgc tgaatgggat
      541 tgggaaaacg cggtagccag cggccccagc aactggggca atagcagtgc tttcagcccc
      601 aaacaaaacg ctttctccag agctgtgctc gtgactgcct tgaccaaaat cacagtgcaa
      661 tacccaatca tgggtgtcta aaatcgctcc gctttgcgca tcaacacgaa cactataata
      721 atgagtcgca tccaagagat aaatgcttaa atcccaagcc aaacgatatt gctcgtcttg
      781 tgttttttga aataccaact gtacgggaat atcattttga gacacgtcag cggcacggaa
      841 tacataagta ttgccttgac cagagagctc ttcgatgtta ccagcactca atccaaatga
      901 ctgggctgct ttaagcacag ctgattgcgc cccgatcgaa ggtgaggtcg tgttaatttt
      961 actggccaaa tttgaaacaa agcccaaacg tgcagagtac acctgctggt ctttgatggc
     1021 aaatcgagaa gtagaattat ggacttcaat cccggctaat gattggttga cataagccat
     1081 ttgaacatgc atgctctttg aatagctggt cgatttcagc actggcgaat tgacatcttc
     1141 ttgagtcaaa ttcagcgcac tgcgctgtga agacaaatag tctttgatga tgtttaaatc
     1201 atcctgggct agagcagcat tgatactgaa aagcccccct aagaatacga gtagtaattt
     1261 tttcattgat ggattttttt ttatcgattn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncattttt ttttatcgat
     1381 tgcctaagat acacttttgt gcaataaaaa atgaattgcc aaagttaaat tcatacaact
     1441 ttacccccta aacggctgct caaggccagg gcattgctgt ccgtcagacg agaaacaaag
     1501 tgacttattt ccaaaaggac ctcataaaca gtatgttgcg gatgaatttc aagccccgat
     1561 tcttgaatga gaagttgatc aaaaaatgtg ggcgactgat tttttgtgtt tatggctgcg
     1621 ggggcatagg cactcaaaat atcggtaagc attctatggc cggccaactc tttgcgcaat
     1681 acctcaggat gctcgtaaac ccgctcttta ctcaccctta atatatcatt gatctgggcc
     1741 ttgaactgac tttgtgacat tatggattgt tccatttttc cagtaagcaa taaatcttca
     1801 tgggctaaaa agagcgcgct ggcctcttga ataagtcgac tgatcgccaa tgaacgcaaa
     1861 taagccagac ggtccgacga tttagtcagt tgactatact tttccgtttg aatactgtct
     1921 ttgaccaaac gcaataaaaa ctctagcgct acatcctctg aaatccaacc caaattgatt
     1981 ccgtcttcaa agtctatgat ggtatagcaa atatcatcgg cggcttccac taaataggct
     2041 aaagggtgtc gtgtaaaccg tcctaaacca agtttgatta gacccaattc ttgggccact
     2101 tcttcaaaga acgactgatc accgctgaag tatccgtatt tcttgtcagc acaatgcgga
     2161 cttggttttt tggggagtga acccttgggg tacttcataa aggcccccaa agtagcatag
     2221 gacaggcgca atcccccctc gactccatca cgggtttggg tcagcatttt aaacccattg
     2281 gcattgccct caaaatcaca taagtcttga tactcctctg gggtcatatc agaagcatat
     2341 accctgcccg agcccgtctt aaaaaaatct ccgatcgcct tttctccgct atgcccgaag
     2401 ggcggattgc cgatgtcatg agctaaggcg gccgccgcca ctaccgcccc aaaatnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnccactacc
     2581 gccccaaaat cattgggttg atatccgtga atagacgaca aatgaggatg gcgctctaaa
     2641 agggctcggc ccacagcgcg acctaaagat cgcccaacca cagagacttc taaactatgg
     2701 gtcaatcgcg tgtgcacaaa tgaattttta gacaatggaa tcacttgagt cttatcctgc
     2761 agacttctga agtgtgagga aaaaattatt cggtcgtaat cgacctcaaa acccaagcgg
     2821 gtttcatctt gttcaatacg cagtcgctta tgctgatcgc cctgtctttt taaggacata
     2881 agctgttccc aggtcatcat atatttttta ctccagatta ttactcaggc aagataggtt
     2941 ttttggttca ttttcaaaac gatcgcaggg gtcataacat tgaggtaacc tttatgtgat
     3001 acaaacataa tttgagcata acctcggggt tacatacaga ggtcatcttt gcagcgagta
     3061 tttaaaacac cccatgagaa aaatttttat cacgacatta tttagcttaa tgtcattgat
     3121 cgctgttggg caaacaacag gatcaattgt cggacttttg accgacaaag aattcaacaa
     3181 tgagccattg gcctttgcca atgtcattat caaaggtcaa aatacaggga caacctctga
     3241 ttttgacggt ctgtatgccc tagaggattt acctgtgggg tcgtatacga ttgtctatag
     3301 tttcgtgggt tatgaaactg tagaagtgga caatattatt gtcgaagaag acaaagtgac
     3361 cacagtaaac gtgcctatgg gggccagcgc tgcgactttg gaagaagttg tgatcaccac
     3421 cacggtgcgc aaagaaagtg aagtcgctct attgttggag caaaaaaatg cggtaactca
     3481 aaagacggcc attggggctc aagagctttc gcgcaaaggg gtaggtgatg ccgccaccgc
     3541 attgtctaaa gtgaccggga tttctaaaca agaggaaggt tcgggaaaca tttttgtgcg
     3601 cggtctggga gaccgttaca acgtaacgac gcttaacggc ttacccctgc cttcagacga
     3661 cccatcacgc aaaaacatca acctgagtat tttcagcaca aacatcgttg agaatatcgg
     3721 aatcgataaa accttcaacc cagagcaata tgccgatttt gctggggcca acatcaatat
     3781 cgattccaag aatgccatgg ccaacggaat aatttctgtg agtttggatt ctgnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnngccaag atcagtttta tcgcacggat gggcccgaca attttggatt ttacgacatt
     3961 aattatcccg catttgccct gaataattac aattttgaga ccagttggga tcgccgtacg
     4021 gctgacgcac ccgcgaactt gggcctcacc attcaaggtg gagacagctt ccaaatcggc
     4081 gaagacacca aactgactgt atttggcgtt ggcgcgcaca gcaatcaata ccaataccgt
     4141 gaagggatct cgcgcggggg cgttgaagtg agctctgtgc cgaacgcgga tttcgattat
     4201 gtcagttatg aatacagcac caatacaacg ctgatgggcg atgtcggaat caaacacaaa
     4261 aatctaaaca tcaactacag tgggctcgtc ctgaacactt caaacgagca gcaattagag
     4321 aattttggcg ttatcgacaa agatgacgac gcctcacaag ggggtggatt tattcagcgc
     4381 gcggttttta cccgcaccaa cctcatcgta aaccaattgc atgcagacta taaagtaagc
     4441 gatcgcatta acgtcaatgc ttctggctct tacagtttcc ttcatagtgc tgagcccaat
     4501 cgccgtcaag tcactttggt gccacaagat ttggacgaac cagacggacc taagtctttt
     4561 gaattcgttt ctgcagcctc gagtaatcac cgcttttatg ctgatctcta tgaggaagaa
     4621 atcgcaactg cctttgaaac ttcgataaag ctgtttaaaa atgatcaaga cgagtttgat
     4681 ggcaatcttg ctttaggttt tagttcacgt gacaaagaag tcgatttttc cgnnnnnnnn
     4741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc gatttttccg
     4801 ccacccaatt taactttcgt atcaatcgtg gtgctgggat tgttcagcca attgtcgaaa
     4861 acatttatga tgttgacgcc tactttaatc aggacaacct caatgctgga ttatttcgaa
     4921 tcgaaacctt tagaggaagt gctgatgtgg ccaatgccct agatccccag acctatggtg
     4981 gaacgcaaag catcttggct ggatatgcca acttctcgta taccttcaat cctaaattca
     5041 ccatgattgt cgggttacgc ggcgagcaaa tcaaccaaga tatcgaatgg tccacgtctt
     5101 tggatcctga tggagacagc aacagtctcg acgaattcca gctcctaccc gcgctttcaa
     5161 tgaagtatac ccttacggag gatcaaaact ttaagtttgc cgcaagcaaa acttatacac
     5221 tccctcaata caaggaacgt gctccatttt tattccaaga ggtaaaccaa gattactttg
     5281 gtaatccatt tttgtccgct tccacaaact acaatattga tgctaaatgg gaattgtttc
     5341 cttcaaattc ggaacttctc tcgattggtc tatttgccaa aatcatccaa aatccgatca
     5401 atacggtaac gattcagtcg gccgcaaatg atattagctg ggccaatact ggagatcaag
     5461 ccactgccct tggtattgag gttgaatcgc gtaaggtgct gatgagccgt gaaacagaat
     5521 atgctgactt taccaatacg cagaaactta ccgccgggtt gaacctcgcc tttatggata
     5581 caaaccaaga tttgaacggc gaaaaagttt ttcaggaggc cggccttagt ttcgatccaa
     5641 cttattcgtc aacaggaatt actggagcgt ctgatttagt agccaatgcc gatatcagtt
     5701 tttataaaga ctttaaagaa cacaaaaatg tgctcattac cctggcagcg aactatttct
     5761 cagaccgaat atttgcctta ggaaactttg gaaaaggaaa tatcgtcgaa aaaggagtgc
     5821 cgactttgga ctttgtagcc aagtcacaaa tcaccaaaca actgagcata ggcctttccg
     5881 ccaaaaacct tttaaacccg agcattgaac gattccaaga agccgtagat ggcgatgtaa
     5941 accccattcg cgaccgaatt caggaacaag ccaccactgt gctttcattc aagcgcggtt
     6001 atgatttgaa aatttctctc aattatattt tttaaatact catcaatcaa ttcaaacagt
     6061 tattaattaa aatcaaaaaa aaatgaaacg atctattgta aaattaagtt taggtatggc
     6121 gcttttggct gtagcttatt cttgtagcaa ggacgacggt aatacgccag atcctcaggc
     6181 agcaacctgt gatgacggaa tccaaaacgg tgatgaaacc ggtgttgact gtggtggttc
     6241 tgcttgtgac ccttgtgcgg ttgacaatat cttagaaggt gatgttacta ctgatgtaac
     6301 cttagacgcc gctatcggat atgaacttgc tggagcttat gtagtgcgct caggtgcgtc
     6361 acttactatt ccagcaggga cagttatctc tgctactggt ggtacttctg cttatatcgc
     6421 tgtagagcgt ggagcacaaa tctttattaa cggtaacgct tctgctcctg tagtaatgac
     6481 ctcaggtgcg tcaagcccag caccaggtga ctggggtgga cttgtggttt gtggtgatgc
     6541 gccgaccaac aaagggtcca atgtaacttc agaggttgct gatttgactt acggtggaag
     6601 caacgctaat gacaactcag gatctattcg ttacttacgc gtagaataca ctggagctac
     6661 attctctaac gataaagagt tcaacggtgt ttctctattc ggagttggcg caggaactac
     6721 ctttgagtat gttcagtctt accaaggtgg tgacgacgga attgagttct tcggaggaac
     6781 tgtagacggg gacaacttag tgtctatcgg aagtggggac gattctatcg acttcgctga
     6841 cggatggcaa ggaaatggta ctgactggta cattgccgat ggggccaaag cgggaatcga
     6901 aggatcgaac aacggcgacg atggaaacgc acagcctgta acgacgacga cacttacaaa
     6961 cattactgta gtcggtccag ttactgaagg cgccttgtac ttcaaagaag gtggtggaaa
     7021 ctttaccatc aacaacttct acacaagtaa tgttgattta ggggtaaaag taaaagacac
     7081 agatgccgag gccgctgcgc gcatcgaagc tggtgcctta gcgatcaaca acatccaatt
     7141 tgctgatgct cctgctggtt tagaaatcac agattatctt ggggctaacc aatcgttcta
     7201 cactcaaggg gtgaatacag gtgctggtaa tggtgcttct tcaccggact gggctgctgg
     7261 atggactgtc ggtcttgaca acagtggacc ttcaggttct gaaaaccttg cgggtgaagt
     7321 aactggtgat gttactttag atgcgggtat caattatcaa ttaaccagtg cttttgtcgt
     7381 acagagcggg gcgtcattga ctattcctgc aggaacgact attcgtgcta ctggtggaac
     7441 tgcagcatat atcgctgtag cgcgcggagg acaaatcttt atcgaaggaa ccgcgtctaa
     7501 cccagtggtt atgacctctg gttcatcaaa ccctgcccct ggggattggg gaggacttgt
     7561 ggtctgtggt gatgcaccaa caaacaaagg gagcaacgtc acttctgaag ttgctgactt
     7621 gacttatggt ggaagcaata tgatggacaa ctctggttct atccgttact tacgtgtgga
     7681 atacactgga gctacattct ctaacgataa agagttnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn tcttaccaag gtggtgacga cggcatcgag ttctttggag
     7861 gaacagtttc tggagattat ctagtgtcaa tcggaagtgg tgacgattct atcgacttcg
     7921 cggacggatg gcaaggaaat ggttcattct ggtatatcaa ggatggcgca aaagctggga
     7981 tcgaaggatc aaataatggt gacgacggaa atgcaagtcc tgtaaccacg actacgctaa
     8041 gtaatattac tgtagtcggt cctgttaccg aaggtgcgct ttacttcaaa gaaggtggag
     8101 gatcatttac aatcacaaac ttctacacgg acgccattga ccttggtgtt aaagtaaaag
     8161 atactgacgc agaagctgct gttcgcatcg agaatggtga cttaagcatc aatccaatgc
     8221 aattcgacaa tccagctgct ggatttgaaa tcactgatta cattggagca aaccaaagct
     8281 ttgtcgtaga aggaccaact tcaggagcag gaaatggtgc cgcggcacca agctgggctt
     8341 ctggatggac ttcaggacta taagcattat caattaagtg ttgttcgctg tatgacatga
     8401 tatacggcaa aagaaaaacg gcctccctcg ggaggccgtt ttgttttaat ttagctattt
     8461 tatactattt gtcataacgg gtcaccacgg tttggtcatt catttcaagg tgggtaacct
     8521 gagcaatttt agaagtatca tattcgacca atatcaatcg atcattatta taaaaactcc
     8581 ataatccaac tttttttcca ttaaaatatt gaccttgaga ctgtttttct cccttgtcat
     8641 tataactcgt ccacaaccca tgtaatttat tcgtaaggtt atatgttccc gtttgagcta
     8701 cagtaccatt gtcatgataa aattttgcta taatttgttc tccctcaatt acgaaagaat
     8761 ttttgtgttc actttgcgca ttgaccacag tcagtagcat cgataaagcg attgtaagcg
     8821 ttagattttt cataagttct gcgtttagac actgctaaga taataaatta taacattcaa
     8881 ttaatgttta ggtaacatta aattaacatt aaactctgaa aaccctcatt ttcaggtatt
     8941 tataatttaa tccttttagg cttaattaat aaaatcataa tgttctggtg ataatttatc
     9001 gatgttttag tgtttatttc acatgtgttt taaatcacac caggcttggt ttttgccgac
     9061 cagcccaata aaaggtcgcg aaacgcgacc ttttatattt atatgattaa cacaagaata
     9121 aagccctcac atttctttaa atgaccgagg atagtttatt tttgaatctg tctaggaaac
     9181 agttctaaac gaatactttt tatgtaaaaa ccatggaaac aacttacatt tttctacttg
     9241 ttgtattggc cttactcgca atcaccgatt taattgtagg tgtgagcaat gatgctgtga
     9301 actttttgaa ttctgctatt gggtcaaaag ctatttcttt cagaaccata atgattattg
     9361 ttagtgtcgg aatatttttg ggcgctgttt tttcgagtgg aatgatggaa gttgcccgaa
     9421 agggaatttt tgtgccgagc caattttact tcgacgaaat aatgatcatt ttcctcgcgg
     9481 ttatgattac cgatatttta cttctcgatt ttttcaacac cctcggcatg cccacttcta
     9541 ccacggtgtc cattgtattt gagctcctag gcgccgctgt aatcatatcg gccttaaaaa
     9601 tattagtgga acaaaatggg tcgattacag aaataaccca gtatatcaat acgacgaaag
     9661 ccactgagat aattgttggc atcttattgt ccgtgtttat cgcgtttatc gtcggggcaa
     9721 ttgttcaatg gatctcgcgc ttgatcttta catttcagta caataataaa atgaaagccc
     9781 tcggatctat tttcggcggc ttggccttag catcaatttt ctattttatc ctgtataaag
     9841 gactaaaagg cactccctat tacgattcat ataaaaatac tcttgacgaa cagctatggg
     9901 tgattctgtt cgtgatcacc ttatcatgta cccttttttc ttttgtcttt accaacgtgt
     9961 tcaaaaagaa catcctggtt gttgtagtag gcgcaggaac atttggtttg gcgctggcct
    10021 tcgcgggaaa tgatttggtc aatttcattg gtgtacccct ggccgcatac cactcttttg
    10081 aggcttggtc ttcttctggt gtaatcccaa gcgaattctc catggttgtt ctggaacaaa
    10141 aagttcctgc agaatcgtta atccttttgt tctcaggagg aattatggtg ctcaccttat
    10201 ggttttcaaa gaaagctaaa acggtcaccg aaacaacaat caatttatca agacaaggcg
    10261 acggttatga aaaattcaag ccgaatttag tcgcccgtta tcttgtcaga tcaggagtat
    10321 ggctcgga
//
LOCUS       DPUP01000007            3497 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5752,
            whole genome shotgun sequence.
ACCESSION   DPUP01000007 DPUP01000000
VERSION     DPUP01000007.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3497)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..367)
                     /locus_tag="DHV98_00285"
     CDS             complement(<1..367)
                     /locus_tag="DHV98_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008268905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HCK04846.1"
                     /translation="MRTDRTFTMLKPDSVEKGYIGAILEKITGAGFKIVAMKLTHMTQ
                     SDAETFYAVHKERPFFGELVEYMTRGPIVAAVLEKENAVQDFRTLIGATNPADAAEGT
                     IRKLYAASMGENAVHGSDSD"
     gene            455..1595
                     /locus_tag="DHV98_00290"
                     /pseudo
     CDS             455..1595
                     /locus_tag="DHV98_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008268907.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
     assembly_gap    1233..1309
                     /estimated_length=77
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1582..2121
                     /locus_tag="DHV98_00295"
     CDS             1582..2121
                     /locus_tag="DHV98_00295"
                     /inference="COORDINATES: protein motif:HMM:PF00254.26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated peptidyl-prolyl
                     isomerase GldI"
                     /protein_id="HCK04847.1"
                     /translation="MKPSNLILSVMISVSFLACAQPEPRKPVQKRSGSFMENSAQRNK
                     ALYAKEEAEILNFIKTQDPLRTYRQSESGFWYALDLIGANTSATAKTGDTVIFSYSVY
                     DLMRNELISAEENGWIEYQVDQSHQELISGVREGIKLTKSQDSMRLLVPSVMAYGYRG
                     IPGVIQPNTPVLIDLKRQN"
     gene            2296..3399
                     /locus_tag="DHV98_00300"
     CDS             2296..3399
                     /locus_tag="DHV98_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK04848.1"
                     /translation="MKHLVLYASVLLLTLTSCKTKYPDLEPGLYAEFETNKGTFVAKF
                     YHEATPLTVANFVALSKGTHPRVDSMYQGKPYFNGLTFHRVIKDFMIQGGDPKGDGTG
                     NPGYAFPDEIVDSLSHRGKGILSMANSGPATNGSQFFITLKETPWLNGKHTVFGEIVL
                     GQDVVDSIGSVTTSKPGDKPVDPVYINSVSIINKGVEEPSFEVELERIEQVKAEKQAR
                     IAMVAAQKKAELDALATEAQAYPSGIEIYWNHKGKGMKPAEGTKVLLDYAGYFSDGNL
                     LDTSIQAVAEQFESLNAQRAANNQYVPLPSAYSKDAGLIPGFKEAMFEMSYGDKLTVF
                     IPSHLAWGAQGAGNVIPPNSDVIFEIELVGPVE"
BASE COUNT         1019 a          762 c          731 g          906 t
ORIGIN      
        1 catcgctgtc acttccgtga acggcattct ctcccattga ggctgcataa agtttacgaa
       61 tcgttccttc agccgcgtct gcaggattgg tggctccgat cagggtgcga aaatcctgaa
      121 cggcattttc tttttctaac acggcagcaa cgattggtcc acgagtcata tactcgacta
      181 actctccaaa gaatggacgt tctttatgga cagcatagaa ggtttctgca tcagattgag
      241 tcatgtgggt taatttcatg gcgacaattt taaaacctgc gccggtgatt ttttctaaaa
      301 tggccccgat gtatcctttt tcaacactgt caggcttaag catagtaaat gtacggtctg
      361 ttctcatggt acttgttaat ttggccgcaa aagtagtgtt ttaattgaca aatatcaaat
      421 gcaaacccat caagaaattg tatcttcgca agacatgaac actgcaattt tatcccaatt
      481 taaaagccta tttcacgagc gcaaaaatgt cgtcatcatc ggacataaga atccggatgg
      541 agacgccatt ggggcttctc ttgggcttta ttggttactt cttgacttgg nnggttcctt
      601 cttgacttag gacataaacc cacggtggtt atgcccaatg actttccaga atttttaaaa
      661 tggatgccgg ggaacgatca aatattgaat tttgaacaac aacccactca agttcaggca
      721 tgtctagaac aagccgatct gatttgcacc ttagatttta atgatttatc ccgggtcgga
      781 agtttagaat cgcttttagt caattcccaa aagacttttg tgatgatcga tcaccaccag
      841 caaccggcag cttatgccgc tttgacctgg agcgacacca cgatgagcag taccagtgaa
      901 atgatcgctc acctcattga agcttggacc ggttggtcta agctcacaaa ggccacagcg
      961 accaatcttt acacggggat tatgaccgat acaggatcat ttagattccc ggcaacaacc
     1021 gcaaagacgc atcaagtcat tgcggcactc atcgaagcag gagcgcaaca cagtaaaatc
     1081 catcaagccg tttatgacaa tcaaagccct ggacgtttaa aactcctcgg gcgggcgttg
     1141 gccaacatgg agattaaatc tcaatacaac acggccttta cctatctcag ccaaaaagag
     1201 ctcgatgagt gtgactttaa aaaaggagat acnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt gactttaaaa
     1321 aaggagatac agagggcttt gtgaactatg cccttcaact ccaaggcatt cgttttgcgc
     1381 ttatttttat tgaaaataag caagaacaaa tcatcaaaat ttctttgcgc agtgtcggtg
     1441 atttctcggt aaatgaattt gctcgaaatc attttaacgg cggagggcat accaatgccg
     1501 ccggagggcg ttttgatggc aacctatcag aagccattga tcatctctta aagcacctgc
     1561 ctgaatataa aaatcaactt catgaagccg agtaatttga ttttgagtgt aatgatttct
     1621 gtaagctttt tggcttgcgc acaaccagag ccccgtaagc ctgttcagaa gcgttcaggg
     1681 agttttatgg aaaattccgc gcagcgcaat aaagcccttt atgccaaaga agaggctgaa
     1741 atcctcaatt ttattaaaac acaagacccc ctgcgcactt atcggcaatc ggaatcagga
     1801 ttctggtatg cccttgacct gattggggca aacacctcag ccacagccaa aacaggagat
     1861 accgtaattt tttcatactc ggtgtacgat ttaatgcgca acgaattaat cagtgctgaa
     1921 gaaaatggct ggatagaata tcaagtagac caaagccacc aggaactcat aagtggggtg
     1981 cgcgaaggga ttaaattgac caaaagccag gattcaatgc gcctactggt cccctcggta
     2041 atggcctatg gatatcgggg aatacccggg gtaatccagc ccaatactcc cgtgttgatt
     2101 gaccttaaac gccaaaatta attttcgttt aaaatggaac aaatcggcga ttctctgttg
     2161 accagaccgc gtattgtcta attcttatat tatcttcgca tagaaatttt acagggccca
     2221 tggcgttgta cagtgcataa ataaggtaaa cgttttttta atctacgaac cataaataaa
     2281 ataacaaaaa tcaatatgaa acatttagtt ctttacgcca gtgtattgtt gttgaccctt
     2341 acgagttgta aaacaaaata tccagactta gaaccaggac tctatgcgga gttcgaaacc
     2401 aataaaggga cttttgtcgc caaattttat catgaagcga ctcctttgac cgtggcaaat
     2461 ttcgttgcgt tatcaaaagg cacccaccct agagtcgatt ctatgtatca aggaaaacca
     2521 tatttcaatg gattgacttt tcatcgcgtc attaaagact ttatgattca gggaggcgat
     2581 ccaaaaggag acggaacggg aaatccaggt tatgctttcc ctgacgagat cgttgacagc
     2641 ctaagtcatc gtggaaaggg cattttatcc atggccaatt caggtcctgc cacaaacggt
     2701 agccaatttt ttattaccct aaaagaaacc ccttggctca acggcaaaca caccgttttt
     2761 ggtgaaatcg ttcttggcca agacgtcgtg gattcaatcg gctcggtaac caccagtaag
     2821 cctggtgata aaccggttga ccccgtgtat atcaattcgg taagtatcat caataaaggt
     2881 gtggaagaac cgtcttttga agttgaactc gagagaattg aacaagtcaa ggctgaaaaa
     2941 caagcccgca tagccatggt cgctgcacaa aagaaagccg agttggacgc gcttgctact
     3001 gaggctcaag cctacccttc aggcattgaa atttactgga atcacaaagg aaaagggatg
     3061 aaaccagccg aaggaactaa agtccttttg gattatgccg ggtactttag cgatggaaac
     3121 ttattagaca caagcattca agccgttgca gagcaatttg aaagcctaaa cgcccagcgt
     3181 gcggccaaca accaatacgt cccgctacct tctgcctaca gcaaagacgc tggcttaatc
     3241 cccggattta aagaagctat gtttgaaatg agctatggag acaaattaac cgtgttcatt
     3301 ccatcccatt tggcttgggg cgctcaaggt gctggaaatg taatcccacc aaacagcgat
     3361 gtgatttttg aaatcgagct tgttggcccc gtcgaataag cattaactaa accaatagta
     3421 ctgctttcgt ggctctatgc gcgaaagcat cattaaaaaa gtcgctgcgt tgcagcgact
     3481 tttttaatac taagatt
//
LOCUS       DPUP01000008           11558 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3193,
            whole genome shotgun sequence.
ACCESSION   DPUP01000008 DPUP01000000
VERSION     DPUP01000008.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 11558)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 11558)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11558
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>288
                     /gene="ychF"
                     /locus_tag="DHV98_00305"
     CDS             <1..>288
                     /gene="ychF"
                     /locus_tag="DHV98_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006258810.1"
                     /note="EngD; translation-associated GTPase; the crystal
                     structure of the Haemophilus influenzae YchF protein
                     showed similarity to the yeast structure (PDB: 1NI3);
                     fluorescence spectroscopy revealed nucleic acid binding;
                     the yeast protein YBR025c interacts with the translation
                     elongation factor eEF1; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCK04849.1"
                     /translation="FEERQMFLDDLGLDEPGASKLIRSAYALLNLQTYFTAGEKEVRA
                     WTIPVGATAPQAAGVIHSDFEKGFIRAEVISFDHYAQYGSESKVREAGKLG"
     assembly_gap    289..447
                     /estimated_length=159
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <448..531
                     /locus_tag="DHV98_00310"
     CDS             <448..531
                     /locus_tag="DHV98_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005845443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04850.1"
                     /translation="REAGKLGVEGKEYIVKDGDVMHFRFNV"
     gene            718..2622
                     /locus_tag="DHV98_00315"
                     /pseudo
     CDS             718..2622
                     /locus_tag="DHV98_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015755025.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV"
     assembly_gap    2361..2444
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2619..>4209
                     /locus_tag="DHV98_00320"
     CDS             2619..>4209
                     /locus_tag="DHV98_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650733.1"
                     /note="decatenates newly replicated chromosomal DNA and
                     relaxes positive and negative DNA supercoiling; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase/topoisomerase IV subunit A"
                     /protein_id="HCK04851.1"
                     /translation="MSEDLENNGLDPLHEQDGAEVQETITRVTGMYRDWFLDYASYVI
                     LERAVPAIEDGFKPVQRRIMHSMKELDDGRYNKVANIVGHTMQYHPHGDASIADAMVQ
                     IGQKDLLIDTQGNWGNIYTGDNAAASRYIEARLSKFALDVVFNPKITQWQSSYDGRKK
                     EPINLPVMFPLLLAQGAEGIAVGLSTKVLPHNFVELIDASIKHLQGKRFDILPDFPTG
                     GLMDASNYNEGKRGGKIRSRALINQLDKSTLVIKEIPFGTNTSSLIDSILKANEKGKI
                     KIKRIEDNTAAEVEILVYLPSGISPDKTIDALYAFTSCETSISPLGCVIEDNRPFFVG
                     VNEMLKRSTDRTVNLLKLDLEYQLNDLEEQWHFASLERIFIENRIYRDIEEVETWEGV
                     IEAIDLGLKPHITHLKRTVTTDDIVRLTEIRIKRISKFDIDKAQQKIDALEDQIAKIK
                     HDLVHLTGYAIAYFSRLKKDYGAGRERKTEIRVFDDIEATKVIIRNTKLYVNREEGFI
                     GTSMRRDEYVTDCSDIDDIIVF"
     assembly_gap    4210..4373
                     /estimated_length=164
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4374..5286
                     /locus_tag="DHV98_00325"
                     /pseudo
     CDS             4374..5286
                     /locus_tag="DHV98_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015755024.1"
                     /note="decatenates newly replicated chromosomal DNA and
                     relaxes positive and negative DNA supercoiling;
                     incomplete; partial in the middle of a contig; missing
                     start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DNA gyrase/topoisomerase IV subunit A"
     gene            complement(5500..5844)
                     /locus_tag="DHV98_00330"
     CDS             complement(5500..5844)
                     /locus_tag="DHV98_00330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV"
                     /protein_id="HCK04852.1"
                     /translation="MTALFSGCFNDQRNCASCKTGQFSFSTALAGQIETSLFERFEQY
                     EVEYYKGKQDTSDIRWINDCEYILQKRNPKNRAEEQAVHIKILRTDETGYEFEYKTVG
                     STKTLKGRVNRS"
     assembly_gap    5848..5944
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6031..6504)
                     /locus_tag="DHV98_00335"
     CDS             complement(6031..6504)
                     /locus_tag="DHV98_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HCK04853.1"
                     /translation="MVNSAEFAKRLGEILEYYGISAAAFSDMVAVNRSTISHLLSGRN
                     KPSLEFVLKVLNTFPEVELYWLLNGEGHFPTHPKNQNSESPGAMISKNKTGPDSIESQ
                     AKNTSLLDHVHNEESMVQGAKSIQASAGHSEDLDFGTVERIVVFYKNGRFKTYTP"
     gene            6754..7932
                     /locus_tag="DHV98_00340"
     CDS             6754..7932
                     /locus_tag="DHV98_00340"
                     /inference="COORDINATES: protein motif:HMM:PF00246.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04854.1"
                     /translation="MLTFVIMMLSPTEILHLYKGTKVPKLGSRYTPPGALIELIKTAK
                     SRGIYTVLGTSIQGREIGCIEIGSGAFKILAWSQMHGDESTATRALVDLFSTLTQEKQ
                     NQEFIARILNYCTLRIVFQLNPDGAQAYQRENADGCDLNRDAMTQNQPESQILADLVA
                     QFNPDLCLNCHDQRSLYSLSTGVNPPYISFLAPTIDEHSTLTHARRQAMKYISSAHAL
                     LQSMGFDKVGRYDESYCVHCFGDYFQSKGIPTILIESGFIIGDQEREESRYVVYIALL
                     GILNGITAGNERLTTEKQYFDIPENLNILRDIVLKNVPYNGRLVDIGLQNRLILNQGR
                     LRQETYVHDIANPGTIFGYASQDLKAEEILINSHENDFENKIIASIMLKKSGLLIKIE
                     "
     gene            7981..8460
                     /locus_tag="DHV98_00345"
     CDS             7981..8460
                     /locus_tag="DHV98_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013072138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK04855.1"
                     /translation="MSKIKLDETDHDILEMLIENTRTPFTDIAKKLNISAGTVHVRVK
                     KMEESNIIKGSSLVVDYKKLGYSFIAYIGIYLNKTSQTQFVLERLREIPFVTVAHVTT
                     GKFNIFCKIRARKTSHAKEIIFSIDDIEGVTRTETMISLEESINDKKRLMHAIFNAI"
     gene            complement(8485..>8885)
                     /locus_tag="DHV98_00350"
     CDS             complement(8485..>8885)
                     /locus_tag="DHV98_00350"
                     /inference="COORDINATES: protein motif:HMM:PF01761.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCK04856.1"
                     /translation="YELGRRKTLNFGHTLGHAIESYCLDHYPENFMKHGEAVGIGMLL
                     ALYLSHVTQGFPKTKFLHFSEKLQKLLPEFRFDKAAQEQIISYLIHDKKNTHGRINFV
                     LLKDVGAYVIDCQVTNAQIHEAFNFWQSVA"
     assembly_gap    8886..9027
                     /estimated_length=142
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9028..9716)
                     /locus_tag="DHV98_00355"
     CDS             complement(<9028..9716)
                     /locus_tag="DHV98_00355"
                     /inference="COORDINATES: protein motif:HMM:PF01761.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HCK04857.1"
                     /translation="MSHSIENTDHIIRFGATAWPDLNALLNNGQWSSIFVLTDESSQK
                     FCYPIFKEKIEKFDLKLMIIPQGEPSKSIEWTQKLWEELVEKGGDRKSLMINLGGGVV
                     TDLGGFVASTFRRGIDFMNVPTTLLSMVDAAIGGKTGIDLGVLKNQIGVVAQPKAIFI
                     FPQLLNTLPERELSSGWMEMVKHGFISNEPYLEDCLVTPNKANPHLEQLIWESVKIKN
                     EVVTQDPYELGR"
     assembly_gap    9874..9954
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            9959..>10515
                     /locus_tag="DHV98_00360"
     CDS             9959..>10515
                     /locus_tag="DHV98_00360"
                     /inference="COORDINATES: protein motif:HMM:PF01619.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase"
                     /protein_id="HCK04858.1"
                     /translation="MISSESLVKIGTNLTKLALNMHLPVEGLIRATVFDHFCGGVNEQ
                     DAMSVVKSLQSVGVRSVLDYSVEGKEEEAQFDATRDKVLSLIEFSTEKSSMPFAVFKP
                     TGLGRFQIWEASAQGTLQGPQLEEWNRLVQRYDDLASAAHKNQLMLLIDAEESWMQDG
                     ADALCTQMMFRYNKTRPVVFNTLQC"
     assembly_gap    10516..10713
                     /estimated_length=198
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <10714..>11042
                     /locus_tag="DHV98_00365"
     CDS             <10714..>11042
                     /locus_tag="DHV98_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase"
                     /protein_id="HCK04859.1"
                     /translation="DRLDYLKELHLQSKAKGVKLGFKVVRGAYMEKENDRAQNMGYPT
                     PICRDKKHTDEVFDSVITYILKNLNDIALFMGSHNEESTLKALELMEQHGIEKNDPRV
                     WFGQLYG"
     assembly_gap    11043..11192
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <11193..11403
                     /locus_tag="DHV98_00370"
     CDS             <11193..11403
                     /locus_tag="DHV98_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013871031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proline dehydrogenase"
                     /protein_id="HCK04860.1"
                     /translation="YGMSDHITYNLSDQGYNVAKYIPFGPVKDVMPYLIRRAEENTSV
                     AGQTSRELALLKKELRRRKSARGQA"
BASE COUNT         3217 a         1978 c         2296 g         2990 t
ORIGIN      
        1 cttttgagga gcgacaaatg ttcttagatg atctgggatt ggatgagccc ggagcctcaa
       61 aactcattcg aagtgcttat gccttgttaa atttacagac ctattttact gctggagaaa
      121 aggaagtacg tgcctggaca attcctgttg gggccacagc gccacaagct gcaggagtca
      181 ttcattcgga ttttgaaaaa gggtttattc gtgctgaggt aatttcattt gatcactacg
      241 cacaatacgg aagtgagtcg aaagtacgag aggcaggtaa actaggcgnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnncga gaggcaggta aactaggcgt ggaaggtaag
      481 gagtacattg tcaaagatgg cgatgtgatg cattttagat ttaacgtcta aaatcaatta
      541 atctccctgg ttttaacggt tcaatcatcg agttaaaggc gcgattgggt ttggctctca
      601 aggcttgaat tacttgattt ttcttaacaa ttatttgacc taattgttaa ttactttaac
      661 cttccaaggt tttccatttt tagggagaat tttatcttag cgactcaaca atcgcccatg
      721 tcaaataccc aatataccga ggacaatatt cgctcactcg actggaaaga gcacattcgc
      781 ctgcgtccgg gcatgtatat tggtaaatta ggcgatggtt ctacagccga cgacggtatt
      841 tatatcctac tgaaagaggt cctggataac agtattgacg agtttgtcat gggggcgggc
      901 aaatctattg aaatccgaat caaggacaaa gaagtgcgtg ttcgagacta cggaagagga
      961 attccactag gaaaagtggt tgatgtcgtc tccaaaatga ataccggggg taaatacgat
     1021 acacgagcgt ttaaaaaatc tgttggacta aacggggttg gaacaaaagc cgttaatgct
     1081 ttaagcagtt ccttccgcgt cgaatctgtg cgcgatggtc aaatgaaatc cgctggattt
     1141 gaactcggtg agctcgtcga tgatccgaca ccagaggaaa gcgctaagcg ccgcggaact
     1201 cgggttattt ttactccgga tgaatcaatt ttcaaaaact tcaaataccg caatgagtat
     1261 gtggagaaaa tgctccgcaa ttatgtttat ttgaacccgg gccttaccat tgatttcaat
     1321 ggagaaaagt tttttagtga aaatggtctg aaggatttac tcgaggacaa tatgtctgaa
     1381 gaggaccgat tataccccgt gattcacctc cgtggagagg acatcgaaat cgccctgaca
     1441 cacagtaaaa ctcaatacag cgaagagtat cacagttttg taaacggtca aaatacgact
     1501 caaggaggga cgcatcaagc cgnnaagaga attttacggt aaaaattacg atgcgagtga
     1561 tgtgcgcaaa tcaatcgtag gggccatcag catcaaagtt atggaacctg tctttgaaag
     1621 tcaaaccaaa accaaattgg ggtccacaga catgggaggg aatttgccca ctgtaaggac
     1681 gtatatcaat gattttatta aaacgcaact cgataatttt ttacataaaa atcaagagat
     1741 tgcggaaaaa attcaacgta aaattattca ggcggagcga gaacgaaagg agctcagtgg
     1801 tattgttaaa ttggcgaaag agcgcgccaa aaaggcgagt ttacacaata aaaaactcag
     1861 agattgtcgc gttcatctta cggattcaaa aagtgaccgc accttggaca ccaccttgtt
     1921 tattaccgag ggagactctg caagtggaag tattactaaa agtcgcgatg tcaacacaca
     1981 agctgtattt agcttaaaag gaaaaccgct caactcctac ggattgagca aaaaaatcgt
     2041 ttacgaaaac gaagaattta acctcttgca ggcggcactt aacattgaag aatcattaga
     2101 ggacttacgt tacaataata ttgtcatcgc aaccgatgcc gatgtggatg gaatgcacat
     2161 acggctgctc ttgatcactt tctttttgca attttttccc gaactcatta aagaagggca
     2221 tttatatatt ctacagacgc cattatttcg cgttcgcaac aaaaagaaaa cgatatactg
     2281 ttattctgat caagagcgta tcgacgcgat agaagaattg aagccaaagc ctgaaatcac
     2341 tcgatttaaa gggcttggtg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnntgatga gtttagacat
     2461 tttattggcg ccgatatccg cctagatccg gtgatgctag acaaagcgat gagtgtggaa
     2521 gacatgctca gtttttacat gggaaaaaac acgcccgatc gtcaagaatt cattatcaat
     2581 aatctaaaag ttgaattgga tcaagtccaa gagaccacat gagtgaagat ctagaaaata
     2641 acggtttaga tcctttgcac gagcaagatg gggctgaggt tcaggagacg ataaccagag
     2701 tcacgggaat gtatcgtgat tggtttttag actacgccag ttatgtgatt cttgagcgcg
     2761 ccgtgccagc gattgaagac ggttttaaac ccgttcaaag aaggatcatg cattctatga
     2821 aggaactgga tgacgggcgt tataataaag tggccaacat cgtggggcat accatgcagt
     2881 atcatcctca tggagatgcg agtatcgctg atgctatggt ccaaattggt caaaaagatt
     2941 tattgattga cacccaagga aattggggga atatttatac tggggataat gcggcagctt
     3001 cgcgatatat cgaagcccga ttgtcaaaat ttgcacttga tgtagtcttc aatcctaaga
     3061 ttacccaatg gcaatcgtct tacgacggcc ggaaaaaaga gcccattaat ctgccggtca
     3121 tgttcccgtt attattggcg caaggggcag aaggtattgc tgtggggctt tcgactaagg
     3181 ttctgcctca caattttgtg gagctcattg atgcttcgat taagcatttg caaggaaagc
     3241 gatttgatat actcccggat tttccaacgg gtggattgat ggatgcttct aattacaatg
     3301 aaggtaagcg cggggggaaa attcgctctc gcgcccttat taatcagctc gataagagta
     3361 ctttggtcat taaagaaata ccttttggta caaacacatc gagcttaata gattccatcc
     3421 tcaaggccaa cgaaaaagga aagattaaaa taaaacggat cgaggataat actgccgcag
     3481 aggtagaaat tttagtttat ttgccttcag ggatttctcc ggataaaacc attgatgcct
     3541 tatatgcctt taccagttgt gaaacctcta tttcaccgct aggatgcgtc attgaagata
     3601 atcgaccgtt ctttgtcggg gtaaacgaaa tgcttaagcg ctctacagac cgcaccgtta
     3661 atttgcttaa gctagatctc gagtatcaac ttaatgacct cgaagagcag tggcattttg
     3721 cttctttaga gcgtattttt attgaaaacc gtatctatcg ggatattgaa gaggtagaaa
     3781 cttgggaagg agtcattgag gccattgatc taggattgaa gccacacatt acccatctta
     3841 agagaacggt tacaaccgat gatattgtgc gtctgacgga aattcgaatt aaacgaattt
     3901 caaaattcga tatcgataag gcgcaacaga aaatcgatgc ccttgaagat caaatcgcta
     3961 aaattaaaca tgatttagtt cacctgaccg gttacgcgat cgcctacttt agtcgtttga
     4021 aaaaagatta tggagctggg cgtgaacgca aaaccgaaat ccgtgttttc gatgatattg
     4081 aggcaaccaa agtgatcatt cgaaatacaa aactatatgt aaatcgagaa gaagggttta
     4141 tcggaacaag tatgcgtcgc gatgagtatg ttaccgattg cagtgacatc gacgatatca
     4201 ttgtctttan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnggtcagc
     4381 gataagactt ttgttggcaa aggaatcatc tatgttgggg tttggaagaa aaaagacaag
     4441 cgcaccattt acaatctcgt ttataaagac ggggcaaaag gggcgacttt tgttaaacga
     4501 ttccctgtaa ccagtattac acgagatcgg gaatacgata taaccgcagg aaaccctggt
     4561 tccaaagtgc tttatttcac ggctaaccct aatggggagg ctgaggtagt aaccgtcttg
     4621 cttcgccagt cgggcagtat taaaaagctg aaatgggatc tagatttttc tgaaattctg
     4681 gtcaaaggtc gcgcctcaaa aggaaatatt gtttcaaaat atgcggttaa gcgaatagag
     4741 ctcaaagaaa agggattgtc caccttgaag ccgagaaaaa tttggtttga cgacacggtc
     4801 caacgactca atgtggatgg ccgtggagaa ttgctgggag aatttacccc tgacgatcgc
     4861 ttgcttattg tccggcaaaa cggtatggtt aaaactgttt tgcccgatat gtctctccat
     4921 tttgatgatg acatgattat tttagagcaa tggaaaaagg ataaacccat aaccgtgatc
     4981 tattgggccg gggataaaga attgttttat gtcaagcgtt ttgtggtaga acatccagat
     5041 cgtgaggaat tggtggtcaa tgatcatcca aagtcctatt tggaaaaagt ctttacggat
     5101 tatcgtcctg tggccgaact cgtttttgtg aaggagcgca ataaaaccag aaaggataat
     5161 ttagagattg atttagcgtc atttatttcg gtcaaaggga tttctgcgtt gggcaatcaa
     5221 ctgaccaaag ataaagtgct tgaaatcaat ccattagacc ctttgcctta tgacgtggag
     5281 gaagaagtcg ccgccctcga ttccgacgat ttcgatgagc atgaaggcgc ttctgattca
     5341 aacgacccgt tgacccctga ggaacagaca aaaaaaataa tggatattga tgttcaagag
     5401 gagcccgttc aacaaccaaa caccaataat aatacaaatg atgacgagtc gtcgtcgggc
     5461 agcgacaacg gtcaaggtca aatcaccttg ttttgagcat taagagcgat ttacgcgacc
     5521 tttaagtgtt ttggtggagc ccacagtctt gtattcaaat tcatagcctg tttcgtcagt
     5581 acgcaatatt ttaatatgta ccgcttgttc ctctgctcgg tttttgggat ttcttttttg
     5641 taaaatatat tcgcagtcgt tgatccaacg tatgtcggaa gtatcttgct tccctttgta
     5701 gtattctact tcatattgct caaagcgctc aaataagctg gtttcaattt gtccagcgag
     5761 ggcggtagaa aaagaaaatt gtccggtctt acatgaagcg cagttccttt gatcgttgaa
     5821 gcaacccgag aaaagggcag tcacgagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5941 nnnncgagaa taaagaaggt agtggttctt gttttgaatt tcattgcgca aatttcgtta
     6001 aaaaaacctg attaatcgcc tgaaccatgt ttagggcgta taagtcttaa atcgcccatt
     6061 tttataaaaa acgacaatgc gttctacggt gccaaaatca aggtcctcag aatggccagc
     6121 ggatgcctga attgattttg ccccttgaac cattgattcc tcgttatgaa catggtccaa
     6181 caacgacgtg ttttttgctt ggctttcaat tgaatcaggt ccagttttat ttttggatat
     6241 catggccccc ggagattctg agttttgatt ttttggatga gtagggaagt ggccttcccc
     6301 atttaggagc caatataatt ctacttctgg gaaggtattt aggaccttca atacaaactc
     6361 taaacttggc ttatttcggc cggaaagaag gtgagaaatc gttgatcgat tgaccgcaac
     6421 catgtctgaa aatgccgctg cagaaatccc gtaatattcc agaatttcac ccaatctttt
     6481 tgcgaattca gcactgttta ccattgtaat ttaattgttt aacaaaacta acaaattgag
     6541 gtttaaaaac ggctgagttg ggtctgattt tacaaataaa aattaatatt aattaaatct
     6601 tgactttatt taatataacg taaatgactg attataaaat atttaaataa tgtaactgta
     6661 tcgcttgttt atccttgtaa ataattcatc ctttttgcgg cttatttcgg cctaaaaacg
     6721 acttaatctc tgtttactac tgtaaacaac catatgctta cctttgttat aatgatgtta
     6781 agtccgaccg aaatattaca cttatacaaa ggcactaaag tgcctaaatt agggtcacga
     6841 tatacgccgc ccggtgcatt aattgagttg atcaagacgg caaaatccag aggtatttat
     6901 acggtgttag gaacgtcgat tcagggtcgt gaaattggct gtatagaaat cgggtctggc
     6961 gcatttaaaa ttttggcttg gtcccaaatg cacggagatg aatctaccgc gacacgtgcc
     7021 ttggtggatt tattttctac tttaactcaa gaaaagcaga atcaggaatt cattgcacgg
     7081 atattaaact actgtacttt acgaattgtt tttcaattaa atcccgatgg agcacaggcc
     7141 tatcagcgcg aaaatgcgga cggttgcgat ttaaatcgag acgcaatgac acaaaatcag
     7201 cctgagagtc aaatactggc cgatttagtc gctcaattca acccagacct gtgtttaaat
     7261 tgtcacgatc agaggagttt atatagcctt agcacgggag tcaatcctcc atacatatcg
     7321 tttttagcgc caactattga tgagcattca acgctcaccc atgcgcgaag gcaagcgatg
     7381 aagtacatta gttctgcaca tgccttgtta caatctatgg gatttgacaa ggtgggaagg
     7441 tatgacgagt cctattgtgt ccattgtttt ggtgattatt ttcagtcaaa aggaattcca
     7501 acaatattaa ttgaatcagg gtttattatt ggggaccagg aacgcgagga gtcacgttat
     7561 gtggtttata tcgctctatt gggaattctt aatggtatta ctgcgggcaa cgagcgctta
     7621 acaacagaaa aacaatattt cgatattcca gaaaatctga atatccttag agatatcgtg
     7681 ctaaagaatg tcccttataa tggaagatta gtggatatcg gacttcaaaa tcgtttgatt
     7741 ttgaaccaag gtcgcttgag acaagagacc tatgtccacg atattgcaaa tcccggaacc
     7801 atttttggct acgcttcgca agatttgaag gcagaggaaa tattgataaa ttctcacgaa
     7861 aacgatttcg aaaataaaat aatcgcaagt attatgttaa aaaagtccgg tttattgata
     7921 aaaattgaat aatccacagg ttttatcttg agacagttct atttttgtca aaaaaatgaa
     7981 atgagcaaga ttaaacttga cgaaactgat cacgacatcc ttgagatgct tatcgaaaat
     8041 acgcgtacac cgtttacgga catcgccaaa aagctaaata tttcggctgg gaccgttcac
     8101 gttcgagtga aaaaaatgga ggagtccaat attataaaag gctcttcgct tgtggttgat
     8161 tacaaaaaat taggttattc atttatcgcc tacatcggaa tttatctaaa taaaacatcg
     8221 caaacacaat ttgttttaga gcgcttacgc gagattccct ttgttaccgt agcccatgtc
     8281 actacgggta agtttaatat tttttgtaaa atccgggcca gaaaaacaag tcatgccaaa
     8341 gaaattattt ttagcattga cgatatagaa ggagtgacgc gaacggaaac aatgatttct
     8401 ctagaagaaa gcatcaatga taaaaagcgt ttgatgcatg ccatctttaa tgccatctaa
     8461 cggatggctc agtaatgcat taatttatgc tacagattgc caaaaattaa acgcctcatg
     8521 gatttgtgca ttggttactt ggcaatcaat aacgtaggcg ccaacatctt tgagtaagac
     8581 aaaattaatg cgaccatggg tgtttttttt gtcgtggatc aggtaggaaa taatctgttc
     8641 ttgagctgct ttgtcaaaac gaaattcagg gagtaatttt tgtaattttt cagaaaaatg
     8701 caagaattta gttttgggaa aaccttgggt aacatgagat aaataaaggg cgagtaacat
     8761 cccgattcca acggcctccc cgtgtttcat gaagttttcg gggtagtggt ctaaacaata
     8821 actttctatc gcatgcccta aagtatgacc aaagttcaat gtttttcgtc gccccaattc
     8881 ataagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9001 nnnnnnnnnn nnnnnnnnnn nnnnnnncgc cccaattcat aagggtcttg ggtgacgact
     9061 tcatttttaa tctttacgga ttcccaaatt aattgttcca aatgtggatt cgctttattc
     9121 ggtgtaacca ggcagtcctc caggtatggt tcgttagata taaaaccgtg cttcaccatt
     9181 tccatccatc ctgagctcaa ttctcgctcc ggtaacgtat tgagtaactg tggaaaaatg
     9241 aaaatagctt ttggttgcgc cacaacgcca atttgatttt tcagaacacc tagatctatt
     9301 cctgtcttac caccaatagc ggcatcgacc attgaaagta gggttgtggg tacattcata
     9361 aagtctatcc ctcgtcgaaa ggtgctggcc acaaaccccc ctaggtcggt gaccacacca
     9421 ccacccaaat taatcattaa gctttttcta tccccgcctt tttcaaccaa ttcctcccat
     9481 aacttttggg tccattcaat tgattttgaa ggttccccct gaggaataat cattagtttc
     9541 aaatcgaatt tttcaatctt ttctttaaag atggggtagc aaaatttttg tgacgactca
     9601 tcggttaaca caaaaattga actccattga ccgttgttca acagggcgtt taaatcgggc
     9661 catgccgttg cgccaaatcg aattatatgg tcagtatttt caatggaatg agacattgac
     9721 aaaacttttt tggtaaaaaa aactaagctc aaatctaact atatttgcgc ttaattaaag
     9781 actgtatggc gggaaataag ttgtttgata ataccgaaaa ggcatttgcc cttaagactg
     9841 atgcagccct tgagcgtgcg tatgcccttt tccnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnccgaat
     9961 gatctccagt gaatcattgg tgaaaattgg cacaaatttg accaaacttg cgctcaatat
    10021 gcatttgcct gtggaggggt taattcgcgc gacggttttt gatcattttt gcgggggtgt
    10081 gaacgagcaa gatgctatga gtgtggtcaa atcattacaa tcggttgggg taaggtccgt
    10141 acttgactac tctgttgagg gcaaagaaga agaggcccag ttcgatgcga cacgagataa
    10201 agtattgtca ttgattgaat tttcgactga gaaatcttca atgccattcg ccgttttcaa
    10261 acccacagga ttaggacgat ttcaaatatg ggaggccagt gctcaaggta cgcttcaagg
    10321 gccacagctg gaagaatgga accgcttagt acagcgttat gacgatttgg ctagcgcggc
    10381 ccataaaaat caattaatgc tcctgattga cgctgaagag tcatggatgc aagatggggc
    10441 agacgctcta tgtacacaaa tgatgtttcg ctataacaaa acaagaccag tcgtttttaa
    10501 tacacttcaa tgctannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngatcggc tagattacct aaaggaatta
    10741 catctccagt caaaagctaa aggcgttaaa ttaggcttta aggttgttcg cggggcttat
    10801 atggagaagg aaaatgacag agcacaaaat atggggtatc ccacccctat ttgccgtgac
    10861 aaaaaacata ctgacgaagt ttttgattcg gtaatcactt atatactaaa aaatttaaat
    10921 gacattgctc ttttcatggg gtctcataat gaagaaagca ccctaaaggc tctggaatta
    10981 atggagcagc atggtattga aaaaaacgac ccaagagttt ggtttggaca attgtatgga
    11041 atnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngtatggaa tgagtgatca cattacctat
    11221 aatttatctg atcaaggata taatgtcgct aagtatattc cgtttggtcc tgttaaagat
    11281 gttatgccct atttgatacg aagggccgaa gagaatactt cagtggctgg tcagacaagt
    11341 cgagaattag cgttacttaa gaaagaatta agacgccgaa aatctgctcg agggcaggct
    11401 tgagccaaag atatttattg ccatcaaaat gcaaattgta gatggtattt tataaatcgt
    11461 cacttcataa atttttattc tttgcgggat ttagagatat ttattctcta atcattccaa
    11521 gatccatgat atgaaacaat ttaacctcct gtttttat
//
LOCUS       DPUP01000009            6540 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14586,
            whole genome shotgun sequence.
ACCESSION   DPUP01000009 DPUP01000000
VERSION     DPUP01000009.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6540)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6540)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6540
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            258..3617
                     /locus_tag="DHV98_00375"
     CDS             258..3617
                     /locus_tag="DHV98_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HCK04861.1"
                     /translation="MGILDSVLKIFVGDKSKQDLGQIQPLVEQIKKFEARTAALTLDE
                     LRAKSDAFRRRIKDDQKEIEKKIQELHKAIEAEPDIDKKEDLYNEIDRLKDERYGIEK
                     TTLDEILPEAFAVIKETARRFKENEVLEVTATAKDREFSATKNYITLIGEQARWSNSW
                     DAAGKQVTWDMVHYDVQLIGGIALHQGKVAEMQTGEGKTLVATLPVYLNALAGHGVHL
                     VTVNDYLAKRDSAWMAPIFEFHGMSVDCIDLHQPNSPARRKAYNADITYGTNNEFGFD
                     YLRDNMAHAPDDLVQRPHHYAIVDEVDSVLIDDARTPLIISGAVPQGDRHEFNELKPK
                     ISSIVDVQRKYLTGVLAEAKKLISSGDTKEGGFQLLRVYRGLPKNKALIKFLSEEGVR
                     QILQKTENFYMQDNNREMPKVDAELYFVIDEKNNQIELTDKGVNYLSGSDEPDFFVMP
                     EIGTEIAKIESKGLSLEQEAKEKEVLFREFGIKSERIHTLNQLLKAYTLFEKDTQYVV
                     MDNRVMIVDEQTGRIMDGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYRK
                     LSGMTGTAVTEAGELWEIYKLDVVEIPTNRPIARDDRDDKIYKTKREKYNAVIEEVVQ
                     LSQAGRPVLIGTTSVEISELLSRMLGIRNIKHNVLNAKLHKKEADIVAEAGDAGIVTI
                     ATNMAGRGTDIKLTDAVKKAGGLAIIGTERHDSRRVDRQLRGRSGRQGDPGSSQFYVS
                     LEDNLMRLFGSERISKMMDRLGLQEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLE
                     YDDVMNAQREVVYKRRYNALFGERLRVDIANMIYDTAEVITQSNKLAGDYKNFEFELI
                     RYFSMSAPVDVVAFEKMSEKDITALIYKQAYKHYQEKMTANAAMAFPVIKNVFETQGD
                     KFKRILVPFTDGVKTLNVATDLEKAYNTQGAGLITDFEKNISLAIIDDAWKTHLRKMD
                     ELKQSVQLAVHEQKDPLLIYKFEAFELFKSIIETVNKDVISFLFKGELPQEQQQQIRE
                     AKQVRQKENYSEQKEEIQNLDERSAQARAAGQTQNKAQAVETVVREQPKIGRNDKVTI
                     KHVLNGQTKTLKYKQAIPLIQKGEWVIQSNA"
     gene            3633..5282
                     /locus_tag="DHV98_00380"
     CDS             3633..5282
                     /locus_tag="DHV98_00380"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04862.1"
                     /translation="MKKTLLIAALFGASTWTNVQAQYTNIGFLYAASGVNYDGTVVVG
                     DEGTELFMWTEQNGAMTIGGVAPQGYGGRPDVSADGSKIAGTSINPSTGLGELSVYDV
                     DSGLWTNLGGIGGSSGNSTSSSWGISQDGTSIVGLGWVNAGSAHAIQWSAATGMVDLG
                     STVSGSSSRANDCNGDGSVVVGWQDSTTGFRQGAIWVNGVQQLLTHPGGGASEAGSVS
                     FDGTTVGGSGGSSNNYEAWRYNINTGMENIGPAPVNGWRGATTGLSDDGSVVVGFYRP
                     WPAPATQGQGFYYKDGVGLQNLNDLATSLGIDTEGRTLALPLAVSGDGTTVVGLADDG
                     TGFVLRLAESTAINDACTNAILLSCNQTLAGSTTNATDSGGNGTNDVFYKYVGSGETP
                     MVTASLCNGNTNFDTIIRVYDNCDLTNEIASNDDSCGVQSAVTFESDGISSYFIMVEG
                     TNDSGDFEITIDCTNIMSVDQNAFVNFALAPNPAQDNITVRNALAIDRISIYNLMGQN
                     LMNIDNAGLEQSISIKHLTPGVYFVTAEILGAKHTVPVVKQ"
     gene            5303..6391
                     /locus_tag="DHV98_00385"
     CDS             5303..6391
                     /locus_tag="DHV98_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HCK04863.1"
                     /translation="MTKKPTHKSKPSEASASAQSAKDASIALVRQARLTELSAEQIVT
                     ELKKGNKTALSRAITLIESTAAKHQAQAKEILKLAFGPSKSLRIGITGVPGVGKSTFI
                     EQLGMMLTKKGYRVAVLAVDPSSSLSGGSILGDKTRMQELTQSPLAFIRPTPSRLTLG
                     GVARHTRESIILCESAGYDLILIETVGVGQSETAVFDLCDFFLLLQLAGAGDELQGIK
                     RGIIEMADAIVINKADNEAQLKIAQSAQIEYQRALGLFPHKSSGWQPKTLTCSALHNI
                     GIDAVWSMIQEYVTLTQSNGHFAQKRIDQNLSWLEKTVVESLRETLLLHPEVIDQWDQ
                     LKEKVSKDKITPVDAAEILLKTALRTKT"
BASE COUNT         1955 a         1412 c         1570 g         1603 t
ORIGIN      
        1 tcttatgact caatcgaaga gatctggcca gattatccca cggatgatga ttatctgtgg
       61 aacgaagatg aatattaaac aacagtttca ttactgtgta aagtctcagg cctgtgtgtt
      121 ttgagacttt ttttttacct taaccaaagc caattaaatg gcctaaaccc tttgaatttg
      181 tgggtttttg tcgttttttt gtggcgctaa gtacttgagt tataaattcc aagcccttag
      241 gccgaaatcc aacgataatg ggaatattag acagtgtttt aaaaatattt gtaggggata
      301 aatcaaaaca agatttaggg caaattcagc ccttggtcga acaaatcaaa aaatttgagg
      361 cccgtaccgc cgcccttacg cttgatgaat tacgcgctaa atcggatgct tttcgtcggc
      421 gcattaagga cgaccaaaag gaaattgaga aaaaaataca ggaactgcac aaggccatcg
      481 aagcagaacc agatattgac aaaaaggaag atctttataa tgaaatagat cgccttaagg
      541 acgagcgcta cggcatcgaa aaaacaactc tagacgagat tttacctgag gcttttgcgg
      601 tgattaaaga aactgcaagg cgctttaaag aaaatgaggt tcttgaagta accgcaacgg
      661 ccaaggaccg agaattctcg gccaccaaaa actacattac cctgattggt gaacaggccc
      721 gctggtcaaa cagttgggat gccgcaggca aacaggtgac ttgggacatg gtgcactacg
      781 atgttcagct tatcggaggg atcgcacttc atcaaggaaa ggtggccgaa atgcaaaccg
      841 gtgaaggaaa aaccttagtg gcaacgctcc cggtatacct caacgccctt gccgggcacg
      901 gggtgcactt agtgacggta aacgattatt tggccaagcg agatagcgct tggatggccc
      961 ctatttttga gtttcacggc atgagtgtgg attgtattga ccttcatcaa ccgaattcac
     1021 cagcacgccg caaggcctat aatgcggaca ttacttacgg aaccaataac gaatttggtt
     1081 ttgattatct gcgcgataat atggcgcatg cccctgatga tttagtccaa agaccccacc
     1141 attacgccat agtggatgag gtggacagtg tccttattga tgatgcccgt acgcccctga
     1201 tcatttctgg agcagtgccc caaggcgatc gccatgagtt caacgaactt aagcctaaaa
     1261 tcagctcaat tgtcgatgtt cagcgcaaat atcttaccgg agttttggct gaagcgaaaa
     1321 agctaatttc tagtggcgat actaaagaag gagggtttca acttttgcgc gtttatagag
     1381 gacttcctaa gaacaaagca ctcattaagt tcctttcaga agaaggcgtg cgacaaattc
     1441 tgcaaaaaac tgaaaacttt tacatgcagg acaacaatcg ggaaatgcct aaagtggatg
     1501 ccgaattgta ttttgtaatc gacgaaaaaa acaaccagat tgaactcact gataaaggcg
     1561 tgaattatct ctcgggtagc gatgagcccg acttttttgt catgcctgag attggtacag
     1621 aaatcgcaaa aattgaaagt aaaggcttat ccctggaaca ggaagccaaa gaaaaagaag
     1681 tgctgttccg cgaatttggc atcaaaagcg aacgtattca tacactgaat caattgctta
     1741 aagcctatac cttattcgag aaagacaccc agtatgtggt tatggacaat cgcgtaatga
     1801 ttgtcgatga acaaacggga aggatcatgg acggtcgtcg ctatagcgat ggtttacacc
     1861 aagcgattga ggccaaagaa aatgtaaaaa ttgaagcggc cacccagact ttcgccacca
     1921 ttacccttca gaattatttc cgtatgtatc gcaagctctc gggaatgacg ggtactgcgg
     1981 taaccgaagc gggagagctc tgggaaatct acaaactcga cgtggtggag atccccacaa
     2041 accgtccgat tgcccgagac gatcgcgatg ataaaattta caaaaccaag cgcgaaaaat
     2101 acaatgccgt tattgaagag gtggttcagc tttctcaagc aggtcgtccg gtactgatcg
     2161 gaacaacttc tgttgaaatt tctgagctat tgagccgcat gttggggatt cgcaatatca
     2221 agcacaatgt acttaatgca aagctccaca aaaaagaggc cgatattgtt gccgaagctg
     2281 gagatgccgg tattgtgacc attgccacca atatggccgg tcgtggaacg gatatcaaac
     2341 tcactgatgc cgttaagaaa gccggtggtt tggcgatcat cggaaccgag cgtcatgact
     2401 cccgacgcgt tgaccgacag ttgcggggtc gaagtggtcg tcagggtgac ccaggaagct
     2461 cacagtttta tgtctctcta gaggacaacc tgatgcgtct ttttggaagc gaacgcattt
     2521 ctaaaatgat ggaccgttta ggccttcaag aaggtgaagt gatccagcat tctatgatct
     2581 ctaaatcaat cgaacgcgcc cagaaaaaag tagaagaaaa taactttggc attagaaagc
     2641 gtctcttaga atacgatgat gtgatgaacg ctcaacgcga agtggtttac aaacgtcgtt
     2701 acaatgcatt gtttggagaa cgcctgcgtg tggacattgc caacatgatt tacgacaccg
     2761 ccgaggtcat tacccagagc aacaagttag ccggggacta caaaaacttt gagtttgaac
     2821 tcattcgcta cttttcgatg agtgctcctg tggatgtcgt tgcctttgaa aaaatgagtg
     2881 aaaaagacat cactgcgctc atttataagc aagcctataa acattaccaa gaaaaaatga
     2941 cggctaatgc cgcaatggcc tttccagtaa ttaaaaatgt ctttgaaacc caaggagata
     3001 aattcaaacg catattggtg ccctttaccg atggggtcaa aacattaaat gtggcgaccg
     3061 atcttgaaaa ggcctataat actcaagggg cagggctaat tactgacttt gaaaaaaaca
     3121 tctcactggc cattattgac gacgcttgga aaactcattt acgcaaaatg gatgagctca
     3181 aacaaagtgt tcaactcgcg gtacacgaac aaaaagatcc cctattgatc tataagttcg
     3241 aggcctttga gctcttcaaa tccattattg aaacggtcaa taaagacgtg atttctttct
     3301 tatttaaagg agaactccca caagagcagc agcaacaaat tcgcgaggcg aaacaagtcc
     3361 gccaaaagga aaattacagc gaacaaaaag aagaaataca aaatctagat gaacgctcag
     3421 cgcaggcaag agcagcgggc caaacacaaa ataaagccca agctgtagag actgtggtgc
     3481 gtgagcagcc aaagattgga cgcaatgaca aagtgactat caaacatgtc cttaacggcc
     3541 aaaccaaaac gcttaaatac aaacaagcca ttccgctgat tcaaaaagga gaatgggtta
     3601 ttcaatcaaa tgcgtaatta gaaacaaaaa cgatgaaaaa aacattactt attgctgctc
     3661 tatttggggc gagcacttgg actaatgttc aggcgcaata caccaatatc ggttttctgt
     3721 atgctgcctc aggagtgaat tatgacggga ctgttgttgt tggcgacgaa ggaacggaac
     3781 tctttatgtg gacagagcaa aatggagcaa tgaccatagg cggggtcgca ccccaaggct
     3841 atggtggtcg ccctgatgta agcgccgacg gcagtaaaat tgctgggacg agtattaatc
     3901 caagcaccgg tcttggtgaa ttaagtgttt atgatgtcga tagtggactc tggactaatc
     3961 taggagggat cggtggatcc tctggaaact cgaccagttc ttcatggggt atttctcaag
     4021 acggaacatc cattgtgggc ttaggctggg tcaatgctgg atcggcgcat gccattcaat
     4081 ggagcgctgc tacgggtatg gttgacctcg ggagtactgt ttctgggagc agttcaagag
     4141 cgaacgactg caatggagat ggcagtgtcg tggtaggatg gcaagacagc accacaggtt
     4201 ttcgtcaagg ggcgatttgg gtcaatgggg tacaacaatt gttgactcac ccaggcggtg
     4261 gcgcctctga agcgggctct gtttcgtttg atggaactac ggtgggcgga agcggtggct
     4321 caagcaacaa ctatgaagct tggcgataca atatcaatac aggtatggaa aatatcggtc
     4381 ctgcaccggt taatggctgg cgaggagcga cgaccggact ctctgatgat ggatcagtag
     4441 tcgtcggatt ttatcgtcca tggcccgctc ctgcgacgca aggtcaagga ttttattaca
     4501 aagatggtgt tggtctacaa aacttaaatg acttggcgac cagcctaggt atcgatactg
     4561 aaggacgcac tcttgcgctc cctttagcgg tttcaggtga tggaactacc gttgtgggct
     4621 tagcggatga tggcacggga ttcgttttgc gtcttgctga aagcaccgca attaatgatg
     4681 cctgtacgaa tgcaatcttg ttgtcttgta accaaaccct tgcaggatct acgaccaatg
     4741 caacagattc aggtggaaat ggcaccaacg acgtgttcta taaatatgta ggcagtggag
     4801 agaccccaat ggttacggcc tctttgtgta acggaaacac aaacttcgat accattattc
     4861 gcgtttatga caactgtgat ttaacaaacg aaatcgcctc aaacgatgat tcttgtgggg
     4921 tccaaagtgc ggttaccttt gagagtgacg gaatcagtag ctacttcatc atggttgaag
     4981 ggaccaatga ttcaggagac ttcgagatca ccatcgactg taccaatatc atgagtgttg
     5041 accaaaacgc ctttgtgaat ttcgccttgg ccccaaaccc agcccaggac aatatcactg
     5101 tacgtaacgc gcttgctata gatcgtattt cgatttacaa tcttatgggg caaaatctaa
     5161 tgaatataga caacgcggga ttggagcagt ctatctcaat caaacattta acgccagggg
     5221 tatactttgt cactgccgag attctaggcg ctaaacacac cgtacctgtg gtcaaacaat
     5281 aaaccatagg ttaggttttt ttatgactaa aaaaccaaca cataaatcaa agccgtcaga
     5341 agcatccgcg agcgcacaaa gcgctaagga tgcttctatt gctttggtcc gtcaggcacg
     5401 tctgactgaa ctcagtgcag agcagatcgt taccgagctt aaaaagggca acaaaaccgc
     5461 actgagccga gccattactc taattgaaag caccgcagca aaacaccaag ctcaggctaa
     5521 agaaatactc aaactggcct ttggtcccag caagtctctg cgcattggca tcacaggagt
     5581 gcccggcgtg ggcaaaagca cctttataga acagttgggc atgatgctca ccaaaaaggg
     5641 gtatcgcgtg gctgttttgg ccgtagaccc aagcagtagt cttagtggcg gcagtatatt
     5701 gggagacaaa acgcgaatgc aagaactgac tcaatctcca ctcgccttta tccgccctac
     5761 cccgagccga ctgactttag ggggtgtggc gcgtcataca cgagagagta ttatcctttg
     5821 tgagtccgct ggttacgacc ttattttaat tgaaaccgtt ggtgtcggtc aaagcgaaac
     5881 agccgttttt gatctctgcg attttttctt attgctccaa ctcgctggtg ccggtgatga
     5941 acttcaaggc attaaacgcg ggattattga aatggccgat gccattgtga tcaataaagc
     6001 cgataacgag gctcaattaa aaatagctca atcggcacaa atcgaatacc aaagggcact
     6061 cggactcttt ccgcataagt ccagtggatg gcagcccaaa acattgacct gttccgcgct
     6121 tcataatatc gggattgacg cggtatggtc aatgatccag gagtacgtga ccctaactca
     6181 atccaatggt cattttgcac aaaaacgtat tgatcaaaat ttaagttggt tagaaaaaac
     6241 ggttgttgaa tctctgcgag aaaccttgtt attgcatcca gaggttatcg accagtggga
     6301 ccagctcaaa gaaaaagttt ctaaggacaa gataacgcct gtagacgctg cagaaatcct
     6361 attaaaaaca gcgcttagga caaagacttg aaccactcaa tttgggcctt taagccttct
     6421 tcgagactcg tttttggggc ataccccaat aaacgtttgg ccttatcgat gaccgctagg
     6481 gtccggtctt gatccccagg tcttgggggc attatttttt tgattattgt cagatcggaa
//
LOCUS       DPUP01000010            5750 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17905,
            whole genome shotgun sequence.
ACCESSION   DPUP01000010 DPUP01000000
VERSION     DPUP01000010.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5750)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5750)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5750
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1003
                     /locus_tag="DHV98_00390"
     CDS             <1..1003
                     /locus_tag="DHV98_00390"
                     /inference="COORDINATES: protein motif:HMM:PF13416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein"
                     /protein_id="HCK04864.1"
                     /translation="AVVPSSLWAASGELNIYNWDTYIGETTVDTFSAATGANVQYDLF
                     ADNEELFAKLKEGNPGYDLIFPSDYMVETMITLDMLVEIDHSKVPNIKNLIQEASFID
                     PPFNPGLKYGVPYMWGTVGIGYRKSKVPAVPTSWSALFENDELAGRIALLADVRVVLG
                     IALKYLGYSMNTRNADEIAKARDLIIAAKKNIKTFAPDSGQDLLISGEVDLVMEWNGD
                     IISVIAEDDDLAYVVPDEGSVVWMDNICIPKGAPNIENALAFINHIHDPEVNAEIANT
                     IHYATANAAAKKSIAPDDLANPAIYPTDDIVAKCEALVDVGDDARLYDEAWTQVNAG"
     gene            1134..2048
                     /locus_tag="DHV98_00395"
     CDS             1134..2048
                     /locus_tag="DHV98_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012110457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease"
                     /protein_id="HCK04865.1"
                     /translation="MEEWRKNKKSFAVFMIPATAWLVLFFTIPIGILWIYSFGERGPQ
                     GQTYLAFSFANYARAVEWIHLGILWKSMWMAGVTTVVCILLGFPLALGIAFAPQKYKN
                     PLLLLIIIPFWTNLLIRTYAWIAVLRSKGFLNFGLEWLHDKMDYVLTTVGLGSALGAF
                     EPVQFLYNQQAVIVGLVYVYLPFMILPLYASLEKLDKRYLEASLDLGAGHWRTLFSVT
                     VPLISPGIASGVILTFILALGSYLTPNLLGGTDSMMIGNLIAHEFMAARDWPFGSALS
                     FLLMYGAFLAIWLKSTIETRAAAQRERS"
     gene            2045..2899
                     /locus_tag="DHV98_00400"
     CDS             2045..2899
                     /locus_tag="DHV98_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010150693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HCK04866.1"
                     /translation="MTIFSHLSATPVKYRRRLINPLDYTRRLWLQVTVGFGLLFLYAP
                     LVALVAFSFNDSKRNIVWQGFTFKYYAKAFNNSGLHDAFMNSMIIASISTVVSTVLGT
                     LLAIGLARYKFKGKALYDGWVHLPVVIPEICLGVAMLAFFVWANIPLGLTTITISHIA
                     FSIPFVAVIVRSRMAGFDSSYEEAAIDLGATPWKIFWDITFPYLTPGIVAAALLAFTL
                     SIDDFVITFFTSGPGSTTFPIKIYSMVRFSVTPEVNAASTILIALTVILTVAAMLVQG
                     RGEKGMKK"
     gene            2896..3996
                     /locus_tag="DHV98_00405"
     CDS             2896..3996
                     /locus_tag="DHV98_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012110455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein"
                     /protein_id="HCK04867.1"
                     /translation="MTNQNKKPPIIEVRNLIKRFGETAIAVNDVSLDIYEGEFFALLG
                     PSGCGKTTLLRMLAGFENPSEGLISIGGKDMVGVDPSLRPVNMVFQSYAVFPHMTVAQ
                     NVGYGLKVTGVAPREIDLRVTEALELVKLEGYGTRLPNQLSGGQQQRVALARALIKRP
                     KVLLLDEPLSALDAKLREQMQLELVRLQKSVGITFVIVTHDQDEALSMADRIAVMSKG
                     RVEQLATPAELYEYPSNRFVADFIGKTNIFSATVVGRDGKSLLVDVPQLGRMALPFEG
                     DAQGEISLAIRPEKLRLEAHVASGDKVSVKGKVQQLAYYGGESHVHLDCASGMSLSVT
                     RPNGHRGSYQDVIVGEEAFICWDSADMLVLTH"
     gene            4080..4643
                     /locus_tag="DHV98_00410"
     CDS             4080..4643
                     /locus_tag="DHV98_00410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04868.1"
                     /translation="MTSNAELDCITTVSINLDPDVAGAVGDIESIIDEMYGVLLGYGY
                     RREWPFSDDNNPLLDIKRAKGPHSYAGLAILHAVTCRQAVADGQTQKAVFNALVTQHY
                     RYMAIMGQGGQRISATMAPAPAGSDAAYQARADMVQELRLQGVQDAFMARRLAAVDGG
                     YATPGLVPKQKVDRMRRYLLKFELIQK"
     gene            4782..5459
                     /locus_tag="DHV98_00415"
     CDS             4782..5459
                     /locus_tag="DHV98_00415"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04869.1"
                     /translation="MLYEKDHENTYTNSAKNRMVDYLDEYILQLEANTQLNNYERFLY
                     GKTVIIDNKKYRLNDVCEIIMCEKTIPTFFQIKMHMDGAQEMLTEMLEEAELTDVTLK
                     GMVYHVKLAMPTDEKLDELSGKIKIVSRTQIANITKVKAETVQRIQKGVQAEFIDIIE
                     SSLSSREVTKLHEELRQYFMYLAANAQKKILGKHFKFEDDFTAQDYDRTTRMINGEVI
                     DDDDDDD"
BASE COUNT         1536 a         1113 c         1387 g         1714 t
ORIGIN      
        1 agctgttgtg ccctcgtctt tatgggcggc atcgggtgaa ctaaatattt acaattggga
       61 cacttatatt ggtgaaacta ccgttgatac gttctcggcc gcaacgggtg cgaatgttca
      121 atatgatctt tttgcagaca atgaagagct ttttgcaaag cttaaagaag gcaacccagg
      181 ttatgatctg attttcccgt ctgattatat ggttgaaacg atgataactt tggacatgct
      241 tgtggaaatt gatcattcta aggtcccaaa tattaagaac cttatacaag aggcttcctt
      301 tattgatccg ccatttaatc caggtttgaa atatggtgtc ccttatatgt ggggcacagt
      361 aggcatcggc taccgtaagt caaaagtgcc tgcagtacct acgagttggt ctgcgctgtt
      421 tgaaaatgac gaacttgcag gacggattgc tttgctcgct gatgtgcgtg ttgtgcttgg
      481 gattgcactt aaatatctag gctattccat gaataccaga aatgcggatg aaatagctaa
      541 agctcgtgat ttgatcattg cagccaaaaa gaacatcaag acatttgcgc cagattctgg
      601 ccaagattta ttgatttcgg gtgaggtcga tttggtgatg gaatggaacg gagatattat
      661 ctcggtcata gctgaagatg atgatttggc ctatgttgta ccagatgaag gttctgttgt
      721 ttggatggac aatatttgca ttccaaaggg agcgccaaat atcgaaaatg ctttagcatt
      781 cattaatcat attcatgatc cagaagtgaa cgctgaaata gccaacacta ttcattacgc
      841 aaccgccaat gctgctgcaa aaaaatctat cgctccagat gatttagcca atcctgccat
      901 ctatccaacg gacgacatcg ttgctaaatg tgaagccttg gtcgatgtgg gtgacgatgc
      961 gcgcctttat gacgaagcat ggacgcaagt gaacgcgggc taatccctcg attaaaaaga
     1021 tcggcaaatg cactttgccg atcttgacgt tttataaata atttgatcaa attatggaac
     1081 tttcagggca taagctcaga aatataaaca atgggaattg ttgagcttaa gtgatggaag
     1141 aatggcgaaa aaataaaaaa tcttttgcag tatttatgat tccagctact gcgtggctag
     1201 tgttgttctt tacaattcca attggcatat tgtggattta cagcttcggc gagcgtggac
     1261 cgcaaggcca aacgtatttg gctttcagtt ttgcaaacta cgcgcgggcg gttgagtgga
     1321 ttcatctagg cattttgtgg aaatcgatgt ggatggcagg ggttactacc gttgtttgca
     1381 ttttgttagg atttccctta gcgcttggta ttgcgtttgc acctcagaag tacaagaatc
     1441 cacttctttt attaattatc attccgtttt ggaccaatct tcttatccga acctatgcgt
     1501 ggatagcagt acttcgctcg aagggatttt tgaacttcgg tttggaatgg ctacatgaca
     1561 agatggatta tgtattaact acagtggggt tgggcagcgc tttaggggct tttgaaccgg
     1621 ttcagtttct ctacaatcag caagcagtca ttgtagggct ggtttatgtt tatctaccgt
     1681 ttatgatctt gccactttat gcatctcttg aaaaactaga taagcgctat ttggaagcca
     1741 gcctcgatct tggcgctggc cattggcgaa cactgttttc agtgaccgta ccactaattt
     1801 ccccgggtat tgcgtcggga gttattttga catttatttt ggcgcttggc agttacctca
     1861 cccctaatct tttgggcgga acagattcta tgatgattgg caatcttatt gcgcacgaat
     1921 ttatggcggc gcgcgattgg ccgtttggct ctgcactatc atttttgtta atgtatggtg
     1981 catttttggc gatctggctt aaatcgacga tcgaaactcg tgcggcagcg caaagagagc
     2041 gctcatgact attttttcgc acttatccgc caccccagtt aaatacagga gacgtctgat
     2101 aaatccttta gactataccc gcaggctttg gctgcaagtg acggttggtt tcggactttt
     2161 atttctttac gcgccactgg tggcgttggt ggcttttagt tttaatgatt ctaaacgcaa
     2221 tatagtctgg caaggtttta cttttaaata ttatgcgaag gcttttaata attcaggcct
     2281 gcatgacgca tttatgaata gtatgattat agcaagtatc tcaacagtgg tttccaccgt
     2341 tttgggtaca ctgttggcga ttggccttgc gcgttataaa ttcaaaggta aggcgctcta
     2401 tgatggatgg gtgcatttac cagtcgtcat tcctgaaatc tgccttggtg tagcgatgtt
     2461 ggcctttttc gtttgggcaa atatcccctt gggcttaact acaataacaa taagtcacat
     2521 agctttttcc attccttttg ttgcggtgat tgtgcgctcg cggatggcag gttttgatag
     2581 ctcttatgag gaggctgcta tagatttagg cgcgacacct tggaaaattt tttgggacat
     2641 tacctttcca tatttaacac ctggaattgt ggctgccgcg ttattagctt tcaccctatc
     2701 gattgatgat ttcgtgatta cattctttac gtctggacct ggttcaacca cattcccaat
     2761 taaaatctat tcaatggtgc gttttagcgt aacgccagag gtgaatgctg cttcgactat
     2821 tttgattgcc ttgactgtta ttttgacggt ggcagcaatg ttagtgcagg gtcgtggtga
     2881 aaaaggaatg aaaaaatgac taaccaaaat aaaaagccac caatcatcga agttcgaaac
     2941 ctgataaagc gttttggtga aaccgcaata gccgttaatg atgtgtcttt ggatatttat
     3001 gaaggtgagt tttttgctct tttgggtcct tcaggctgcg ggaaaacgac actactgcgc
     3061 atgctagcag gatttgaaaa cccgtcggaa ggcctaatct caattggtgg caaagatatg
     3121 gttggcgttg atccatcatt gcgacccgta aatatggtgt ttcaatcata tgcagttttt
     3181 ccgcatatga cggtggccca aaatgttggt tatgggttga aagtcacagg tgttgcaccg
     3241 cgcgaaattg atcttcgggt aactgaggct ttagagctgg ttaagcttga gggatatggg
     3301 acccgtttgc ctaatcaatt atcgggtggg cagcaacaac gagttgcttt agcacgggct
     3361 ttgatcaaac ggccaaaagt gttgttgctt gatgaacctt tgtcagctct tgatgccaag
     3421 ctgcgcgagc aaatgcaact tgaactggtg cgtttgcaaa agtcagttgg gattacattt
     3481 gtgattgtga cacatgacca agacgaagca ttgtcaatgg ctgaccgtat cgcagttatg
     3541 agcaaggggc gggtcgaaca acttgcgacg ccggcggagc tctacgaata tccaagtaac
     3601 cgctttgtgg ccgatttcat tggtaagact aatatttttt ctgccaccgt tgttggtcgc
     3661 gatgggaaaa gtttgttggt tgatgtgcca caattgggcc gcatggcatt gccgtttgag
     3721 ggcgatgcgc aaggtgaaat ttctcttgcc atcaggcccg aaaaattgcg ccttgaggcg
     3781 catgtggctt ctggtgataa ggtcagtgtt aagggaaaag tgcagcaatt agcttattat
     3841 ggtggtgaga gccacgtgca tttagactgt gcctcgggaa tgtccctttc ggtcacccgc
     3901 cccaacggtc accgtggctc ttatcaagat gtgatagtag gagaagaagc gtttatttgt
     3961 tgggacagcg ccgatatgtt ggttctcacc cactaattcc ccacggctaa gcttttgtcg
     4021 atggcgtctt gcagtgcgag gcaatatgcg ccaaattgtt ttatggaaag acaaaaccta
     4081 tgacatccaa cgccgagctg gactgtatca ccactgtttc aataaatctt gaccctgatg
     4141 ttgctggggc agtgggggat attgaaagca tcattgacga aatgtacggc gtgctgctgg
     4201 gttatggcta tcggcgcgaa tggcccttta gcgatgataa caaccctctg ctggatatca
     4261 aacgtgccaa gggcccccac agctatgctg gtttggctat tttgcatgcc gttacatgcc
     4321 gccaagcggt tgccgatggc caaactcaaa aggccgtttt taatgcattg gttacacagc
     4381 actaccgcta tatggccata atggggcagg gaggtcagcg cattagcgcc accatggctc
     4441 ctgcgccggc gggttcagat gccgcctatc aagcccgcgc agacatggtg caagaattac
     4501 gcttgcaagg ggtacaagac gcgtttatgg cgcgccgttt ggcagcagtt gatggtggtt
     4561 acgcaactcc agggttagtt cccaaacaaa aggtagaccg gatgcggcgt tatttattaa
     4621 aatttgaact tattcaaaag tagactgttt ttataaagta atggttaata aagatgaaat
     4681 aagatataat atttccagaa tgaaaaatta gtttttaata aatatttatt tcaatagttt
     4741 ttttgttttt cagtagtgca acattaggga gctggattta tatgctatat gagaaagacc
     4801 acgaaaacac ttacacaaat agtgccaaaa atcgaatggt tgattatctt gatgagtata
     4861 ttttgcaatt agaggcaaac acacagctca ataattatga acggtttctt tacgggaaaa
     4921 ctgtaataat cgacaataaa aaataccgtc ttaacgacgt gtgtgaaatt ataatgtgtg
     4981 aaaaaactat cccaactttt ttccaaataa agatgcacat ggatggtgca caggagatgt
     5041 tgactgaaat gcttgaagaa gcagagttaa cagatgtgac gctaaaaggc atggtttacc
     5101 atgttaagct tgcaatgccc acggacgaga agctggatga gttgtctgga aaaattaaga
     5161 tagttagccg cactcaaata gctaatatta caaaagttaa agctgaaact gttcaacgga
     5221 tccaaaaagg tgttcaggct gaattcatag atataattga atcctcactt tcgagccgag
     5281 aggttacgaa gctgcatgag gaattacgac aatattttat gtatttagcg gcaaatgcac
     5341 agaagaaaat tctaggcaaa cattttaaat ttgaagatga ctttacggca caggattatg
     5401 atcggaccac tcgtatgata aacggagaag tgatcgatga cgacgacgac gacgactagc
     5461 ggcgagatca gcctttgcgc cgcctaaaac gccgctggtg aagcggcgtt ttttttgttt
     5521 taatctctca ttgaataaat tcagtgagta ataaaaaatc atttaattga catttattgt
     5581 aatttagtta cttacttaac taagggcgcc aatgcctgaa tttgtaagga gctaaagatg
     5641 aatgctatgt tgtcccccgc atttctgtcg ctattgtccg aagaaaagca cctttcaatg
     5701 actgtcccag tttcagctat gggacgcaat tttttcttgg atgctaggct
//
LOCUS       DPUP01000011            3347 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12032,
            whole genome shotgun sequence.
ACCESSION   DPUP01000011 DPUP01000000
VERSION     DPUP01000011.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3347)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..2173)
                     /locus_tag="DHV98_00420"
     CDS             complement(<1..2173)
                     /locus_tag="DHV98_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCK04870.1"
                     /translation="MQSMAKKITPLMQQYQGIKTKYPDALLLFRVGDFYETFGADAVR
                     AAEILNITLTARNNGGDQTELAGFPYHALNTYLPKLVMAGCRVAICDQLEDPKQTKTI
                     VKRGVTELVTPGVAFNDDILQRKSNNFLAAVSGDQHASGVSFLDISTGEFLVAQGDRS
                     YVEALLQKFNPAEVLWHKRERLRIQKSSSSHGHAFFLEDWVFQKSYADDLLLGHFKTK
                     SLKGFGVEKLELGLIAAGAILHYISTTQHRDLSHITRISRIAQDQYVWMDHFTMRNLE
                     LFAGSGSAQATLFGVMDQTISPMGGRLLKRWLALPLKNIDQIKARHEVVAYWYQNAEL
                     RGALRLALKGVGDLERLISKTATGKINPKEVRYLADSLTAAGPIAQAALDADQKALND
                     LGGRMDLCPDLVDLIYTQLQEQVPALLSKGSVMATGVSAELDDLRSIAQGGKTHLEGM
                     LQRHQDETGITSLKIDSNNVFGYYIEVRNSHKDKVPEHWIRKQTLVNAERYITEELKT
                     YEAKIFGAQERIAALEYELFTALVQKIMPFIGAVQKTASALAEMDCLMGFAELAVKNN
                     YVCPQLDDHFALEIKQGRHPVIERQLPEDNPYIANDVYLDREQQQIIMITGPNMSGKS
                     ALLRQTALIVIMAQMGCFVPAQAVNMGVVDKIFTRVGASDNIAQGESTFMVEMNETAS
                     ILNNVSQRSLILLDEIGRGTSTYDGISIAWAISEYLHEHPSR"
     assembly_gap    2398..2530
                     /estimated_length=133
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2531..2986
                     /locus_tag="DHV98_00425"
     CDS             <2531..2986
                     /locus_tag="DHV98_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HCK04871.1"
                     /translation="VVLDNIRSLNNIGSVFRTGDAFLAAHIHLCGITATPPHRDIQKT
                     ALGATESVPWTYHADTQDAILALKKNGIQVWAVEQAEGSTLLQNWGTCPSTGVALVFG
                     NEVKGVAQNIVDLCDGVLEIPQHGIKHSLNISVSAGMVLWEAFKRYALQ"
     gene            complement(2964..>3347)
                     /locus_tag="DHV98_00430"
     CDS             complement(2964..>3347)
                     /locus_tag="DHV98_00430"
                     /inference="COORDINATES: protein motif:HMM:PF01712.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCK04872.1"
                     /translation="LFSDLIITDYDRYKSLIFAKITLSAAEFDLYQKFFQQMHRDLPR
                     PQVYVYLAQSTERLLENIKRRGRSYEQSIDGDYLQKIHSGYLTHLSSEAHQGKVIRID
                     LNDLDFVQHRSDYLKILDLIAKHNA"
BASE COUNT          867 a          801 c          705 g          841 t
ORIGIN      
        1 cccgagaagg atgctcgtgt agatactcac ttatagccca agcaatagaa atcccatcat
       61 aagtactggt gccccgaccg atttcatcca aaaggattaa actgcgctgg gacacattat
      121 tcaaaatact ggccgtctca ttcatctcga ccataaacgt agactcgcct tgcgcgatgt
      181 tgtcactggc cccaacccgg gtaaatattt tatctaccac gcccatattg acggcctgtg
      241 ccggcacaaa acagcccatc tgggccatga tcacaatcag agcggtttgg cgcaataagg
      301 cactcttacc actcatattc ggccctgtaa tcatgatgat ttgctgctgt tctcgatcca
      361 gatatacatc gttagcgata taaggattgt cctcagggag ttgacgttca atcactggat
      421 gacgtccttg tttgatttcc aaagcaaaat gatcatcgag ctgtggacag acataattat
      481 ttttaaccgc tagctcggca aagcccataa ggcaatccat ttctgccaaa gccgacgctg
      541 ttttttgaac cgcgcctata aacggcatta ttttttgcac caacgcggta aagagttcgt
      601 attcgagggc ggcaatacgc tcctgtgcac cgaatatttt tgcttcgtag gttttgagtt
      661 cctcggtgat atagcgctca gcgttcacta aggtttgttt gcgaatccaa tgctcaggga
      721 ctttatcctt atgactgttg cgcacctcga tataatatcc aaagacgtta tttgaatcaa
      781 ttttaagcga agttattccc gtttcgtctt gatgacgctg cagcattccc tccaaatggg
      841 tttttccccc ttgggcaata gagcgcaaat cgtctagctc ggcactgacc cctgtagcca
      901 tcacagaacc cttactgagc agagcgggaa cctgctcttg aagctgagta taaatcaaat
      961 ctacgaggtc aggacataaa tccatgcgcc cgcccaaatc attaagcgcc ttttgatcag
     1021 catccaaagc agcttgggca ataggcccag ccgcggtcag ggaatcagct aaataacgaa
     1081 cttccttggg gttaattttt ccggtagccg ttttggaaat caaacgctcc aaatccccta
     1141 cgccttttaa cgcaagacgc aaggccccac gcaattccgc attttgatac caatacgcca
     1201 cgacttcatg acgcgccttg atctggtcaa tatttttcaa aggcaaagcc aaccatcttt
     1261 tcagcaagcg cccacccatg ggagagatcg tctgatccat taccccaaaa agggtcgcct
     1321 gggccgatcc tgatcccgca aataattcca aattgcgcat ggtaaaatga tccatccaca
     1381 catactgatc ttgagcaatc cgtgaaattc tggtgatatg actcaaatcc cgatgctggg
     1441 tcgtactgat ataatgcaga atggccccag ctgcgatcag gccgagctcg agtttttcaa
     1501 ccccaaagcc cttaagactt ttcgtcttaa aatggcccag cagcaagtca tctgcgtatg
     1561 atttttgaaa gacccaatct tctagaaaaa aggcatgtcc gtgggaggag gaagattttt
     1621 gaatccttaa gcgctctctt ttatgccaaa gcacctcagc aggattaaac ttctgaagca
     1681 aggcctcgac atagcttcga tcgccttgag ccactaaaaa ctctcctgta gaaatatcca
     1741 aaaaagacac gccacttgca tgttgatcgc cgcttacggc cgccaaaaaa ttattgctct
     1801 tgcgctgaag gatgtcgtcg ttaaaagcca cccccggagt aacgagctcc gtaacgccgc
     1861 gcttaacaat agttttagtt tgcttggggt cctcgagttg atcgcaaatc gccacacgac
     1921 accccgccat gaccagtttg ggtaaatacg tatttaaggc gtggtacgga aagccggcaa
     1981 gctcagtttg atccccgccg ttgttgcgcg cagtgagagt aatattcaaa atctcagccg
     2041 cacgtaccgc gtccgcgcca aaagtttcgt aaaaatcccc tacgcgaaaa agcaataagg
     2101 catcagggta cttagttttg attccctgat actgctgcat taaaggcgtg atttttttgg
     2161 ccatgctttg gatttgtgct agacgggcta aggtacttat taattaaaat tattgaaaat
     2221 tctctggccc aattctctgg cccatcagtc aataaaacat ccgctaagga caaaggtgcc
     2281 ttatggcgtt gcctcttttt ctgaaagccg tatttttgcc tgaagcttat gaaacaccgt
     2341 aaactcgaaa atagcgaatt agaccgtccg gacctgcagg aagttcaatc catgaagnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn gtggttttag acaatattcg tagcctgaac aatattggtt ctgtgtttcg
     2581 cacgggggac gcctttctgg cggcccatat tcatttgtgc gggatcacgg ccacaccacc
     2641 gcatcgcgac atccaaaaaa cagcccttgg ggccactgaa agtgtacctt ggacctatca
     2701 cgccgacaca caagatgcta ttctggccct gaaaaaaaat gggattcaag tctgggcggt
     2761 cgaacaagcc gagggttcta cactcttaca aaactggggg acctgcccgt ctacaggcgt
     2821 ggccttagtc tttggcaatg aagttaaagg ggtcgcccaa aatatagtcg atctctgtga
     2881 tggtgttttg gaaattcccc aacacggcat caagcattcg ctcaatatct cggtcagtgc
     2941 gggtatggtg ttatgggagg cctttaagcg ttatgctttg caataagatc cagaatcttg
     3001 aggtaatcgc tgcggtgctg cacaaaatcc agatcgttta aatcgattcg aatcacttta
     3061 ccctgatggg cttcactgct taaatgggtt aaatagcctg aatgtatttt ttgtaagtag
     3121 tccccatcga tagactgctc ataactgcgg ccccgccgtt taatattctc caaaaggcgc
     3181 tccgtggatt gcgcgaggta gacataaacc tgcggtcggg gcaagtcgcg atgcatctgt
     3241 tgaaaaaact tttgatacaa atcaaattct gcggcactca aggtgatttt agcaaaaatt
     3301 agagacttat agcggtcata atcggtaatg attaaatcac taaataa
//
LOCUS       DPUP01000012            6510 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11265,
            whole genome shotgun sequence.
ACCESSION   DPUP01000012 DPUP01000000
VERSION     DPUP01000012.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6510)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6510)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6510
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>409
                     /locus_tag="DHV98_00435"
     CDS             <1..>409
                     /locus_tag="DHV98_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010134973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HCK04873.1"
                     /translation="GKKGKPFFWIVAADSRAKRDGRFLEKLGTYNPNTNPAAIDINID
                     NSVQWLQNGAQPTDTARTILSDKGVLLKKHLIDGVSKGALTMEQVEEKFSAWVTEKEQ
                     AVANKKNKLADDKAKVKAEALKAEEAVNQARIAA"
     assembly_gap    410..615
                     /estimated_length=206
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            710..1234
                     /gene="rimM"
                     /locus_tag="DHV98_00440"
     CDS             710..1234
                     /gene="rimM"
                     /locus_tag="DHV98_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HCK04874.1"
                     /translation="MDHKDHFFVGKIVKKFSFKGVLLIKLDTDNPEEFINMESVFVDL
                     NGTLVPFFIEEIALHKTELLRIQFEEVYDEQTADSLIGCSLYLPLDLLPKLTGNKFYY
                     HEIIGFTVMDQIHGNIGQITGVNDQTAQALFEINYHGKEILIPVIDEFIVSVNREEKT
                     LHVKTPEGLLELYL"
     gene            1234..1962
                     /locus_tag="DHV98_00445"
     CDS             1234..1962
                     /locus_tag="DHV98_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(6)-)-methyltransferase"
                     /protein_id="HCK04875.1"
                     /translation="MTSSSFQFKQFTIQQDRCAMKVGTDGVLLGAWTRINSDTRRILD
                     VGSGTGLIALIMAQRCPEAEIDGVELDPEAFEQGVENFEQSPWKLNLFNYHCSFQEFA
                     EEIEDNYDLIMSNPPFFNHGDRPENSRKMARDFSSLPLESLVKGAHQLLSKNGRLALI
                     LPIEQEEQLLEITNKYGFGVSYLTKVRGTAQSPIKRILVEFSRLAPINRAQKPQVQEL
                     IIEHQRHQYTKEYRELVGEFYLKM"
     gene            2011..3189
                     /locus_tag="DHV98_00450"
     CDS             2011..3189
                     /locus_tag="DHV98_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCK04876.1"
                     /translation="MKPDLFEAPDYYNLDDLLTEEHKLIRDAARAWVKRDVSPIIEEA
                     AQKAEFPKSIIPGLAEIGAFGPYIPEEYGGAGLDQIAYGIIMQEIERGDSGVRSTASV
                     QSSLVMYPIWAYGNEEQRQKYLPKLATGAWMGSFGLTEPDFGSNPSGMVTNFKDKGDH
                     YLLNGAKLWISNSPFCDVAVVWAKDESGRIHGLIVERGMEGFTTPETHNKWSLRASAT
                     GELLFQDVKVPKENLLPNKSGLGAPLGCLDSARYGIAWGAIGAAMDCYDTALRYAKER
                     IQFGKPIAAFQLQQKKLAEMITEITKAQLLAFRLGQLKEEGRATSAQISMAKRNNVAM
                     ALNIAREARQILGGMGITGEYSIMRHMMNLESVITYEGTHDIHLLITGFDITGENAFK
                     "
     gene            3263..4048
                     /locus_tag="DHV98_00455"
     CDS             3263..4048
                     /locus_tag="DHV98_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme oxygenase"
                     /protein_id="HCK04877.1"
                     /translation="MLHQVLQKIGPLQEEIVSHPLYTHIQRPADLHRFMEHHVFAVWD
                     FMSLLKALQIKLTGTSLPWVPVGDPEIRYLINEIVLAEETDLDLDGKRRSHFEMYLNA
                     MSDAGASTKEIDEFIHNISQGKPWYQAATSIDLPQSVSSFLRFTFSVIDSNEPHKIAA
                     AFTFGREDLIPQMFTSLIRSIQRQFPEENLTGFHHYFQRHIELDDDTHGPLALKMIQE
                     LCGNDPQKWEEVTETALQALELRLTLWNGVLEEIQQAETPELI"
     gene            complement(4045..4455)
                     /locus_tag="DHV98_00460"
                     /pseudo
     CDS             complement(4045..4455)
                     /locus_tag="DHV98_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480988.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
     assembly_gap    4318..4376
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4466..>5122)
                     /locus_tag="DHV98_00465"
     CDS             complement(4466..>5122)
                     /locus_tag="DHV98_00465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCK04878.1"
                     /translation="QYEGKGVAYFIKNPEQYRNQHVVIAGGGDSALDWSIFLSDVAAS
                     VTLVHRRNEFRGALDSVEKVQELKNQGKIRLITPGEVVGLEGEGALSGVRLQAEQGLI
                     TLDCDAFIPLFGLAPKLGPIAHWGLEIEKNAIKVDNSLDYQTNIPGVYAIGDVNTYPG
                     KLKLILCGFHEATLMCQSAYKRIYPERRYVMKYTTVGGVEGFDGTKKEAPKAVIKSID
                     "
     assembly_gap    5123..5248
                     /estimated_length=126
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5249..>5459)
                     /locus_tag="DHV98_00470"
     CDS             complement(<5249..>5459)
                     /locus_tag="DHV98_00470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020081282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCK04879.1"
                     /translation="EKLMEQIAPFSPGFTLGERAETLEKQEDGTFIVTTDQGTQHRAP
                     IVAIAGGLGSFEPRKPPIENLVQYES"
     assembly_gap    5460..5716
                     /estimated_length=257
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5717..5862)
                     /locus_tag="DHV98_00475"
     CDS             complement(<5717..5862)
                     /locus_tag="DHV98_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020081282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HCK04880.1"
                     /translation="MIESDIMIIGAGPTGLFTVFEAGLLKLKCHLIDALPQPGGQCSE
                     IYPK"
     gene            complement(5947..6180)
                     /locus_tag="DHV98_00480"
     CDS             complement(5947..6180)
                     /locus_tag="DHV98_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002668797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04881.1"
                     /translation="MNQASLNERIELALAEIRPFLQNDGGDISLVSVEQDKVVVRLEG
                     ACVDCSVNQMTLKSGVAMTIQKFAPEIQEVVNI"
     gene            complement(6177..>6510)
                     /locus_tag="DHV98_00485"
     CDS             complement(6177..>6510)
                     /locus_tag="DHV98_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chromosome partitioning protein"
                     /protein_id="HCK04882.1"
                     /translation="LGLVENMAYFTPAELPENKYYIFGQSGARHLAEDLEIEFLGEIP
                     LVQSIRESGDIGRPAALQSGTPTAEAFVNMTRAVVQQTVRRNEDLPPTEAVKITTMAG
                     CSALKSKK"
BASE COUNT         1739 a         1296 c         1219 g         1608 t
ORIGIN      
        1 cggtaaaaaa ggaaaaccat tcttctggat tgtcgctgca gacagcagag caaaaagaga
       61 tggtcgtttt cttgaaaaat taggaacgta caatccaaac accaatcccg ctgcgatcga
      121 catcaacatc gacaattcag tacagtggtt gcaaaatgga gcccaaccga cagataccgc
      181 acgtaccata ctctctgata aaggagtgtt gcttaaaaag catcttatcg atggagttag
      241 caaaggcgcc cttacaatgg agcaagttga agaaaagttc tctgcatggg tgacggaaaa
      301 agaacaagct gttgccaaca agaaaaataa acttgctgat gataaagcaa aagtcaaagc
      361 tgaagcctta aaagcagaag aggcagttaa ccaagcgcgt attgctgccn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnccggc tgcagaagaa actgctgagg ctcctgaagc cgcttcagaa
      661 acttctgaag aaagcgctcc tgctgaggaa aaagaataat ttctttttga tggaccacaa
      721 ggatcatttc ttcgttggta aaatcgtcaa aaaattcagt tttaaaggcg tcttgctcat
      781 caagcttgac actgataatc cggaagaatt cataaacatg gaatcagttt tcgttgatct
      841 taacggaaca ctggttccat tttttattga agaaatagcg ctccataaaa cagaactctt
      901 gcgcatacaa tttgaagaag tctatgacga acaaaccgca gactctttga tcggatgcag
      961 cctatacctt cctctagatt tattgccaaa actcaccggg aataaattct attaccacga
     1021 aatcatcggg tttacggtta tggaccaaat acatggcaat atagggcaga tcaccggggt
     1081 caatgatcaa actgcacaag ccctttttga aataaattat catggaaaag aaatattgat
     1141 tcccgtaatc gatgaattta ttgtttcggt caatcgcgag gaaaaaaccc tacacgtaaa
     1201 aactccggaa ggacttcttg agctttatct ctaatgacct cttcctcttt tcaatttaaa
     1261 caatttacaa tacagcagga tcgctgcgca atgaaagtgg gcacagacgg agtacttctg
     1321 ggtgcgtgga ctcgcataaa ttctgatacc cgtcggattt tggatgtagg tagtggcaca
     1381 gggctcatcg ccttaattat ggcccaacgc tgcccagagg ctgagatcga tggtgtcgaa
     1441 ttggatcctg aggccttcga acaaggggta gaaaatttcg aacaaagccc atggaaattg
     1501 aatttattta attaccactg cagctttcaa gaatttgccg aggaaataga ggacaactat
     1561 gatttgatta tgagtaatcc tccgtttttc aatcatggag atcgaccaga gaacagccga
     1621 aaaatggcga gggatttttc gtcattacca ctcgagtctt tggtaaaagg agcccatcaa
     1681 ctcttgtcta aaaatgggcg tctcgcactg attctcccta ttgagcaaga ggaacagtta
     1741 ttggaaatta caaataaata tggctttggt gtttcctatt tgaccaaagt ccgtggcacg
     1801 gcccaaagtc cgattaaaag aattcttgtc gagttcagtc ggcttgcccc aataaatcgt
     1861 gcacaaaaac cacaagttca ggaattgatc attgagcacc aaagacatca atacacgaaa
     1921 gaatatcgag aactggtggg tgaattttac ttgaaaatgt aggccaatcc gcagggtctt
     1981 tataaatttg tacgactaaa aattgacttc atgaagcctg atttatttga agccccagat
     2041 tattacaatc ttgatgattt actgaccgaa gaacacaagc tcattagaga tgcagcacgt
     2101 gcttgggtaa agcgtgatgt ttccccaatt attgaagaag ccgctcaaaa ggctgaattt
     2161 ccaaaatcaa ttattcctgg tttggcggaa atcggtgcgt ttggccccta tattcccgaa
     2221 gaatatggtg gcgctgggct cgaccaaatc gcgtacggaa tcatcatgca agaaattgaa
     2281 cgcggcgaca gtggtgtgcg cagtacggcc tctgttcaat catctctagt gatgtatcct
     2341 atttgggctt acggcaatga agagcagcgt caaaaatatc tccctaaact tgctacagga
     2401 gcgtggatgg gatccttcgg attaactgaa ccagattttg ggagtaatcc ttccggaatg
     2461 gtcacaaact ttaaagataa gggagaccat tatttgctca acggcgctaa actttggatt
     2521 tcaaattcgc ccttttgtga tgtcgccgta gtttgggcaa aagatgaatc cggtcgaatc
     2581 cacggactaa ttgtagagag aggcatggaa ggctttacca ctcctgaaac acacaataaa
     2641 tggtccctgc gtgcttctgc aactggagaa ttactttttc aagatgtaaa agtgcctaaa
     2701 gaaaatttgt tgcccaataa atcaggattg ggcgcgccat taggctgcct tgattcagca
     2761 cgttatggca ttgcctgggg ggctattgga gccgctatgg actgttatga tactgcttta
     2821 agatacgcca aagaacgcat acaatttggc aaacctattg cggccttcca attacagcag
     2881 aagaagcttg cagaaatgat caccgaaatt accaaagcgc agctcttagc atttcgcctc
     2941 gggcaactca aagaggaggg tcgcgctact tcagcccaga tttctatggc caagcgcaat
     3001 aatgtagcta tggccttaaa catcgctaga gaagcacgcc aaatccttgg aggtatgggt
     3061 attactggtg aatattcaat aatgcgtcat atgatgaacc tggaaagcgt tattacctat
     3121 gaaggaacgc atgacatcca tttactcatt acaggtttcg atattactgg cgagaacgct
     3181 tttaaataat gaaatcgaaa aaatcaataa caaaggcttt ttctattaag aggaagcctt
     3241 ttattttgct ataaaattgt ctatgcttca tcaggtactt caaaaaattg gacctcttca
     3301 ggaagaaatt gtaagtcatc cgctttacac ccatattcaa cgtccagccg atttacatcg
     3361 ctttatggaa catcatgtct tcgcggtatg ggattttatg tccttgctaa aggccttaca
     3421 aataaaactt acagggacaa gcttaccctg ggtccctgtt ggcgatccag agataaggta
     3481 tttgatcaac gagattgttt tggctgaaga gacggacttg gacctcgatg gcaaaagaag
     3541 aagtcatttt gaaatgtatc tcaatgccat gagtgatgcg ggcgcgtcga caaaagaaat
     3601 agatgaattc atccataata ttagccaagg aaaaccctgg tatcaagccg ctacaagcat
     3661 cgatcttcca caatccgtta gctcattcct gcgctttact ttttcggtaa ttgactcgaa
     3721 tgaaccgcat aaaatcgcag cggcatttac ttttggccga gaagatttaa ttcctcaaat
     3781 gtttacctct ctaattcgct caatacaacg ccaatttcct gaggaaaatt taaccggctt
     3841 tcatcactat tttcagcgac atatagaatt agacgatgac acccatggac ctttagccct
     3901 aaaaatgatt caagaattgt gtggcaatga cccgcaaaaa tgggaagagg ttactgagac
     3961 tgccttacaa gcccttgagc ttcgattaac gttatggaat ggggtattag aagaaattca
     4021 acaggccgaa acccctgaat taatctaaga ttctggcgct aaggtaactt ttaacccatg
     4081 taaatctgga gttacaaata attgacatcc tagtctagaa ttttttttta catgaaaagc
     4141 ctccgccaac atcgcgactt catcggcgct ttgttcgggc aaaagatgat cgctttcaac
     4201 ataactttga cacgaggcac acatagccat acccccacag acgccaatgg tcccctctgg
     4261 ggctaattca tgcgcgcgaa ccacctccat taaattcata ttcatgtcgg taggggcnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnntatt
     4381 catgtcggta ggggctacta cttgatgggt tttaccttcg cgatcagtta taaataaggt
     4441 gatgtcctga gccatttaga agtgattaat caattgactt gataacggcc tttggggctt
     4501 ccttctttgt gccgtcaaaa ccctctacac cgccaacagt tgtatatttc ataacatagc
     4561 ggcgctctgg ataaatccgt ttataagcgc tttgacacat gagtgtggcc tcgtgaaaac
     4621 cacaaagaat caatttaagc ttgccgggat aagtgttgac gtctccgatg gcatagaccc
     4681 caggaatgtt ggtctgatag tctaacgaat tatcaacttt aatggcgttt ttttcaatct
     4741 ctaaacccca atgggcaata gggcctagct tgggagcaag tccaaaaaga ggaataaatg
     4801 catcacagtc tagagtaatt aagccttgtt cagcttgcaa tcttacgcca cttaaagcac
     4861 cctcaccctc tagtccaacc acctcaccag gagtaatcaa gcgtattttt ccttgatttt
     4921 tcaactcctg aaccttttca acactgtcca aagctccgcg aaattcgttg cgtctatgca
     4981 cgagggttac cgatgcggca acatccgata agaatatact ccagtctagc gctgaatcac
     5041 caccacctgc aatgaccaca tgctgatttc gatactgttc tggattttta ataaagtaag
     5101 caaccccctt accttcatat tgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnta ctttcatatt gaactaaatt ctcgatcggg
     5281 ggtttacgcg gctcaaaact tcccaggcct cctgcgatcg caacgattgg agcgcgatgc
     5341 tgagtccctt gatctgtggt gactataaag gtcccgtctt cttgtttttc taaagtttca
     5401 gcgcgttctc caagagtaaa tccaggtgaa aatggcgcga tttgttccat gagtttttcn
     5461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnntttt tgggataaat ctcactgcat tgacctccgg gttgaggcaa
     5761 agcgtcaatc aggtggcact tgagctttag caaacccgcc tcaaacacgg taaacaggcc
     5821 tgtaggacct gcaccgataa tcataatatc tgattctatc acaaattgtg ttttatactg
     5881 ccaaattaat atttcgcgat gcttttattc atgacctttg tcattaaatc tgaatcgggt
     5941 accctattaa atgttcacta cttcctgaat ctcaggggca aatttttgaa tcgtcatggc
     6001 cacgccgctt tttaaggtca tttgattgac agagcaatcc acacaggccc cttctaggcg
     6061 aaccactact ttatcttgct ctaccgaaac taaggatatg tcccccccat cattttgtaa
     6121 aaaaggacgt atttccgcca aagccaattc gattctctcg tttaatgatg cttgattcat
     6181 ttctttgatt ttagagcact acatccagcc atagtggtta ttttaactgc ttctgtgggc
     6241 ggtaaatctt catttcgacg cacggtttgc tgaacaaccg ctcgagtcat attgacaaaa
     6301 gcttcagccg taggcgttcc tgattgaagc gctgcagggc gccctatatc accagattca
     6361 cgaatacttt gcaccagcgg aatttcgccg agaaattcta tttctaaatc ctcggctaaa
     6421 tgacgcgccc cgctttggcc aaaaatataa tacttgtttt caggcaattc tgctggagta
     6481 aaataagcca tattttcaac caaccctaac
//
LOCUS       DPUP01000013            9468 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3617,
            whole genome shotgun sequence.
ACCESSION   DPUP01000013 DPUP01000000
VERSION     DPUP01000013.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9468)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9468)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9468
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1046)
                     /locus_tag="DHV98_00490"
     CDS             complement(<1..1046)
                     /locus_tag="DHV98_00490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCK04883.1"
                     /translation="MAEVNPAEVSAILKQQLSGLESTASLDEVGSVLTVGDGIARVYG
                     LSNVQYGELVEFDNGLEGIVLNLEEDNVGVVLLGPSKEIKEGATVKRTQRIASINVGE
                     GIVGRVVNTLGQPIDGKGAIEGETFEMPLERKAPGVIFRQPVNEPLQTGIKSIDAMIP
                     VGRGQRELVIGDRQTGKTTVCIDTILNQKEFFDAGEPVYCIYVAVGQKASTVANIAKV
                     LEDKGALAYTTIVAANASDPAPMQVYAPFAGAAIGEYFRDTGRPALIIYDDLSKQAVA
                     YREVSLLLRRPPGREAYPGDVFYLHSRLLERAAKVIADDNIAKNMNDLPASLKDKVKG
                     GGSLTALPIIETQAG"
     assembly_gap    1130..1329
                     /estimated_length=200
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1330..>1514)
                     /locus_tag="DHV98_00495"
     CDS             complement(<1330..>1514)
                     /locus_tag="DHV98_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCK04884.1"
                     /translation="KAQGIQTAKVTLAAPITEALEKEIVAKAKAMTGGSTIELATEIN
                     PEIIGGFILRVGDLQYNA"
     assembly_gap    1515..1755
                     /estimated_length=241
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1756..1912)
                     /locus_tag="DHV98_00500"
     CDS             complement(<1756..1912)
                     /locus_tag="DHV98_00500"
                     /inference="COORDINATES: protein motif:HMM:PF00213.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HCK04885.1"
                     /translation="MTGNRAALRYATALLSLSQDKGQVNAVLGDMQRVVETLSVSADL
                     RSALRSPV"
     gene            complement(1917..2387)
                     /locus_tag="DHV98_00505"
     CDS             complement(1917..2387)
                     /locus_tag="DHV98_00505"
                     /EC_number="3.6.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550334.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit B is part of the
                     membrane proton channel; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HCK04886.1"
                     /translation="MIRRIFSRLVFLANTFVXKFAWKPILDAVNEREQGIKDALDSAE
                     QAKQEMANLQAENEKLLKEARAERDAMIKEARDIKNKMIIDAKEEAKGEADKMVAQAQ
                     AAIESEKKAAIADLKNQVASLSLEIAEKVVRGYLSSDDKQQKLVKNLLDDSSLN"
     gene            complement(2510..2701)
                     /gene="atpE"
                     /locus_tag="DHV98_00510"
     CDS             complement(2510..2701)
                     /gene="atpE"
                     /locus_tag="DHV98_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008255642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit C"
                     /protein_id="HCK04887.1"
                     /translation="MTIPTIVGAGLAVIGVGIGIGQIGGKAMEAIARQPEAYGKIQTA
                     MLIAAALIEGIGFAAIFAA"
     gene            complement(2737..3873)
                     /gene="atpB"
                     /locus_tag="DHV98_00515"
     CDS             complement(2737..3873)
                     /gene="atpB"
                     /locus_tag="DHV98_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F0 subunit A"
                     /protein_id="HCK04888.1"
                     /translation="MQKNHLTALFFTVFVCFGAFNVWASDPKEKVDTPDDRKSEVSAY
                     VKHHNLDTHDFGLFSYTDDQGHHHAVGFPLPVILWSEGLHVFSSSALHHGEEVVASGD
                     KFFKLDAHTYKIYETDAEGTFSYDDKHHVTNVAPLDFSITKSVFMIMVVSVLLFWIFT
                     SLAKSYAQNRSIPKGVGRFFEPIVLYIRDDIAIPNIGEEKYQKYMPYLLTVFFFIWFL
                     NLFGLTPLGINVTGNIAVTTALAIITFLLTNLXTKDYWKHIFDPLGHGMPWAAKIPLY
                     IILIPIEVLGIFIKPFSLLIRLYANMQAGHIVLGSLLGLIYIFQNWIAGPLGFGLSFA
                     ISLIELLVALLQAYIFTMLSALYFGFASESHDHAVAHDGEVQHL"
     gene            complement(3985..4365)
                     /locus_tag="DHV98_00520"
     CDS             complement(3985..4365)
                     /locus_tag="DHV98_00520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04889.1"
                     /translation="MPKTSSAYLSFIGLSLVIFAAHVLARSLWHMEFWSSIMLQSYGV
                     NVGLGLILIAVAHRLLRGHSTYLGWAFVALSGLKFILFFALIWPDIKQDGATSSAEFS
                     SFFVPYLGCLLFELRFLSKRLNAL"
     gene            complement(4389..4604)
                     /locus_tag="DHV98_00525"
     CDS             complement(4389..4604)
                     /locus_tag="DHV98_00525"
                     /inference="COORDINATES: protein motif:HMM:PF09527.8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04890.1"
                     /translation="MPAKENSWKRWLALSGIGLEMGVIIYLGHQIGLWSAQHWALTSK
                     LPEVIGTLAGVALSLYLVVRQTTKLNS"
     gene            complement(4654..5115)
                     /locus_tag="DHV98_00530"
     CDS             complement(4654..5115)
                     /locus_tag="DHV98_00530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell shape determination protein CcmA"
                     /protein_id="HCK04891.1"
                     /translation="MFSDKKQKQFMEPSVSQNRINEGTKLVGDITSTGFFRIDGTIEG
                     TLEKPSKVVLGKSGFIKGKLVCGDADIEGRFEGDLHVSGTLTLKSSARIQGQVVVGKL
                     SVEPGAIFNGTCRMQEAGQSNVSESSAASKSSLFDRPHRLKKTEASETTSV"
     gene            complement(5127..7640)
                     /locus_tag="DHV98_00535"
     CDS             complement(5127..7640)
                     /locus_tag="DHV98_00535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04892.1"
                     /translation="MLVVLGSCSRKKDTFVTRNFHAVNAEFNALYNGGEALIDGNEEL
                     ATNYRDNFWQVLPVERFEIKEAILKPGEKGNPNFNRAEEKAAKAIQRHSIYLNGKEYN
                     PQIDEAYMMLGKARYYGQRFIPAIDAFNFILNRYPSSNSINEARMWKAKSSIQLGNEE
                     FAIKELMELFGKEGLTDQDKADAAAILAQAYINLDSLPAALPMIKLAASMIKDKELQG
                     RYRFIEGQIQNRLSQPDSANLAFQKVIDLKRNTSRTYYVRSFLEQVKNFNYAQGDTVA
                     LKELLWDLGQDRENRPYRDVIFHETGNVYRIMKNTDTAVAYYNKSIEFYNEDRQLQAN
                     NYSTLADINFDLAEYQKAGQYYDSTLTFLEENSRTWRRMKKRRENLSDVIKYERIAAV
                     NDSILGLVAMSPEEQLAYFKAYTEQLIAAAKADSIATAKREKREQNNEFYTKKAGKNS
                     SGATFYFYNSTTVAYGKQEFRSIWGKRGLEDNWRNASKGTITPGADEMAAEEEGIAIE
                     RRTIMDPNTYIGRIPTDSLVIDSLKRTRNFAYYQLGLVYKEKFREYTRAADKLEKLLT
                     FQPQERLVLPSKYYLYKIYEVLNNKQLADSWKMDIINNHPESRYAEILRNPQAQLSSD
                     ASSPEFQYKALYKQFEEGDYQVVLAQCDEYINRYAGNDILPKFELLKATALMYVEGFL
                     AYKNAINFVALTYPQSDEGKQAQEIYTRVLPGLASSDFTAEGDQYKIVYRFDRAQNEE
                     AQEYLETVKTALANFPKEKLEASKDYYSPTELFVIIHGLKSPLGAKGFAETLAAERSY
                     EMNRPYFVISSENYRVVQWHKNLIDYLDLQSVEVSPSGQ"
     gene            7863..8909
                     /locus_tag="DHV98_00540"
     CDS             7863..8909
                     /locus_tag="DHV98_00540"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00175.19,HMM:PF00970.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin reductase"
                     /protein_id="HCK04893.1"
                     /translation="MTHAIELTVTQKRPLTPSSVELTLAVPEELQTNFAFKAGQYLTL
                     IQEIDHAEVRRSYSLCSAPSQNTWKVGIKKVSGGTFSTWAHDVLKEGASLSVLAPQGH
                     FIISPSAEDQQHYLGFAAGSGITPIMGMIQEVMALAPLAKFTLVYANQSPEEAMFLEE
                     LKLLENNHPDRFKMILFYSRASVQNTRFGRIESGTIKHLFQNELAGVTFDQFLLCGPE
                     QMIQTLKEVLPQFGASADRIHDELFFSSAEGALDVKEGQCALTIVLDGESTVLHIDKN
                     TPVLDAALKHDLDPPYSCQGGVCSSCIAQVTQGQAQMIKNQILTDSEVAEGLVLTCQA
                     LAQSDQLTVDYDQA"
     gene            complement(8906..9466)
                     /locus_tag="DHV98_00545"
     CDS             complement(8906..9466)
                     /locus_tag="DHV98_00545"
                     /inference="COORDINATES: protein motif:HMM:PF01075.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04894.1"
                     /translation="MVQDFLDSLKTKRTSITQSGACIGFAPFAAFAGKTYPLDLAKTL
                     CQALIQKGHQVLLFGAPGQEAAQLTALAKDQKGIHVLAGKWTFAQELEVMSTLDLMIA
                     MDSGNGHLAANFGLPVLTLWGATHPSLGFMPFGQGLKRQLYADRRQYPKIPTSVYGNK
                     LPKGYAPLMRSIPVEDIVQKVEDLLG"
BASE COUNT         2460 a         2107 c         1886 g         2570 t
ORIGIN      
        1 cctgcttgag tttcgataat tggcaaagcg gttagcgaac cacccccttt tactttatct
       61 ttcaaagagg caggaagatc gttcatgttc tttgcgatat tatcatcggc aattactttg
      121 gccgcgcgct cgagtaatct tgagtgtaag tagaatacat ccccaggata agcttcacgc
      181 cctggaggac gacgaagcaa tagagacacc tcgcgataag ccactgcttg cttagataaa
      241 tcatcataaa taataagggc aggacgtccc gtatcacgga aatactcccc aattgccgct
      301 ccagcaaaag gagcgtatac ctgcattggt gcaggatcag aagcgttagc agcaacaatt
      361 gttgtgtagg ctagagctcc tttatcttct aaaacttttg caatattcgc cacagtagag
      421 gccttttgcc ctaccgcaac gtaaatacaa tatacaggct ccccggcatc gaaaaattct
      481 ttttggttta gaattgtatc gatacatacg gtagttttcc ctgtttgacg gtccccaata
      541 actagctcac gctgaccacg acccacagga atcatggcat caatagactt aatcccggtc
      601 tgaagtggtt cgttaactgg ttgacggaag atgactcctg gtgctttacg ctcaagaggc
      661 atttcaaagg tttctccttc aatagcacct ttaccatcaa taggctgacc tagggtgtta
      721 actacacgcc ctacaatacc ttcaccaaca ttaatcgacg caatacgttg agtacgtttt
      781 actgtagcgc cttctttgat ttctttggaa ggtccgagca atacgacccc aacattgtct
      841 tcttctaggt tcagtacaat tccttcaagg ccattgtcga actcaaccaa ttcaccatat
      901 tgtacattag acaaaccata aacgcgcgcg ataccgtctc ctacggtaag tactgatcct
      961 acttcatcaa gtgaagcagt cgactcaagt ccgctaagtt gttgtttcaa tattgctgat
     1021 acttcagctg gatttacttc tgccattgtt ttagctattg tgggcaaggc cctttgaatt
     1081 atatactttt tctaaattct cttttgatct tttggaactg atttgcgatn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1321 nnnnnnnnng cattgtattg taagtcccca acacgcaaaa taaatccacc gatgatttct
     1381 ggattaattt cggtagccaa ttcaatcgtg ctgcccccgg tcatcgcctt ggctttggca
     1441 acgatttctt tttctagtgc ttccgtgatt ggtgccgcaa gggttacctt ggcggtctgg
     1501 attccctgag ctttnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnccact ggactgcgca atgccgatcg taaatccgca ctaaccgata
     1801 gggtctccac aacacgctgc atatccccta aaactgcgtt tacctggccc ttatcttggg
     1861 acagacttag aagtgccgta gcgtatctca atgctgctct gttccctgtc atgattttag
     1921 tttaacgatg aatcgtctaa tagatttttc accaattttt gttgcttgtc gtcgcttgat
     1981 aaataccctc taaccacctt ttcagcgatt tccaaagaca aactcgcgac ttgattcttt
     2041 aggtcagcaa tggctgcctt tttctcactt tctatggcag cttgggcttg ggcgaccatc
     2101 ttatcggctt cgccttttgc ttcttcttta gcgtcgatga tcatcttgtt tttgatgtcc
     2161 cgcgcttctt taatcatcgc atcacgctct gcgcgcgctt cttttaacaa tttttcattt
     2221 tctgcctgaa gattggccat ttcttgtttg gcttgctctg cagagtccag ggcatctttg
     2281 atcccctgtt cgcgctcgtt aaccgcgtct aaaatgggtt tccaagcaaa tttcnnaaca
     2341 aaagtgtttg ccaaaaaaac aagcctactg aaaattctcc taataatttt tccataatca
     2401 cggcccgaaa aacgggaggt tatttttatt tatcgtgtcg cctttaaggc gtgggtttca
     2461 ttaaactacc gccccaacca accgttgggg cagcagtaaa ttttgtcaat taagccgcga
     2521 aaatcgctgc gaaaccgata ccttcgatca aagccgctgc aataagcatc gccgtttgaa
     2581 tctttccgta agcctcaggc tgacgagcga tcgcctccat ggctttacca ccaatttggc
     2641 cgataccgat acctacaccg ataaccgcta aacctgcacc tacaatagtt ggaatagtca
     2701 taactaatat taatttaaat taaacattct ctttacttac aaatgttgca cctcgccatc
     2761 gtgcgctaca gcatgatcgt ggctctcact tgcgaatcca aaatacaagg ccgacagcat
     2821 cgtaaagata taagcttgca ataaggccac taacaactca atgagtgaaa tggcaaacga
     2881 caagccaaac cctaacggcc cggcaatcca gttttggaat atataaatca atcctaacaa
     2941 gctccccaat acgatgtgtc ctgcctgcat gttcgcatac aaacgaatca atagtgaaaa
     3001 aggcttgatg aaaatcccca atacttctat gggaattaaa ataatataca atggaatttt
     3061 ggccgcccaa ggcatcccgt gcccgagtgg gtcaaaaata tgcttccaat aatctttagt
     3121 tcnnaggttg gtcaacaaaa aggtgatgat ggccagtgcg gtcgttacgg caatgttccc
     3181 tgttacattg atccctagcg gggtcaaacc aaacaggttc aaaaaccaaa taaagaagaa
     3241 aacggtcaat aagtaaggca tgtacttttg gtatttctcc tcaccaatat taggaatcgc
     3301 tatatcgtca cggatgtaca atacaatcgg ttcgaaaaat cgaccaacac ctttgggtat
     3361 actgcggttt tgcgcataag acttggccaa agaagtgaag atccaaaata acaacacgct
     3421 caccaccata atcataaaaa cgcttttggt aattgaaaaa tccaaaggcg caacattggt
     3481 tacatggtgc ttatcgtcat aggaaaaagt cccctctgca tccgtctcat atatcttata
     3541 agtatgcgcg tctagtttaa agaatttatc ccctgaagcg acaacttcct ctccgtgatg
     3601 aagtgcgctt gacgaaaaca cgtgcaaacc ctcagaccac aaaataaccg gcaatggaaa
     3661 tcctacagcg tgatgatgtc cttgatcatc ggtgtatgaa aataatccaa aatcatgcgt
     3721 gtcaaggttg tggtgcttga cataagcact tacttcgctc tttcgatcgt ctggggtatc
     3781 tactttctct ttggggtctg aggcccatac attaaaggcg ccaaaacaca caaaaacagt
     3841 gaaaaatagt gcggttaaat gatttttttg catccgtcga tatgttgata aactcttaat
     3901 aaaaatcgcg gcaaaaatac cactattgat tagaatctaa aaggaaaagc agggtttttt
     3961 tgcctcttgt aaaatcaggc taaattacag agcgttaagg cgtttggata aaaacctcaa
     4021 ttcaaacaag agacacccca aatagggaac aaaaaaggag gaaaactcag cagaagaggt
     4081 ggcgccatct tgcttaatgt ctggccaaat aagcgcaaag aacaaaataa atttaaggcc
     4141 actgagcgca acaaaggccc agccaagata agttgaatga ccccgcagca agcgatgagc
     4201 caccgcgatt aggatgaggc ctaatcccac atttactccg taagactgaa gcatgatcga
     4261 agaccaaaac tccatgtgcc atagactgcg tgccaggaca tgagctgcaa aaattaccag
     4321 acttaaccca atgaatgaaa gataggcgct cgacgttttg ggcatatgac tctcggcaaa
     4381 tatgggggtt aagaattgag tttagtggtt tgacgcacca caagatagag cgaaagcgcc
     4441 acaccggcaa gcgtgcctat aacttctggc agcttagagg tgagggccca atgctgcgcg
     4501 ctccacaatc caatctggtg ccctaaataa atgataacgc ccatctccag accaatgcct
     4561 gagagtgcca accaacgctt ccaagaattt tctttggcgg gcataatttt tctgtgactg
     4621 gattgactgg gttaaaatga gacgattaaa aacctagacc gaagtggtct cagaggcttc
     4681 cgtttttttt aatcgatggg ggcgatcaaa caaactactt ttacttgcgg cgctgctttc
     4741 agagacgttg ctttgtcccg cctcttgcat gcggcacgtt ccattaaaaa tcgctcctgg
     4801 ttctaccgat agcttcccaa caacaacttg cccttggatg cgcgcagaag attttagtgt
     4861 gagtgtaccg ctaacgtgaa ggtccccctc aaaacgacct tcaatatcag cgtcaccaca
     4921 aacgagcttt cctttgataa aacctgattt tcctaaaacc actttagagg gtttttccaa
     4981 agtaccctcg atggttccat caatacgaaa aaagcctgta gaggtaatgt ctccgacaag
     5041 ttttgttcct tcgtttattc tgttttgact cactgagggt tccataaatt gcttttgttt
     5101 tttatcactg aacatggcta aacgctttat tgtcctgagg gactaacctc aacactctga
     5161 aggtcaagat aatcaattaa atttttatgc cactgaacca cacgataatt ttcgctagaa
     5221 atcacaaaat aaggacgatt catctcatag gaacgctctg cagcaagcgt ttccgcgaaa
     5281 ccttttgccc caaggggcga ttttaagcca tggataatca caaacagctc agtcggagaa
     5341 taatagtctt tactggcctc gagtttctct tttggaaaat tggccaaagc ggtttttacc
     5401 gtttctaaat attcttgagc ttcttcattt tgtgcccgat cgaatcgata aacaatcttg
     5461 tattggtctc cctctgcggt gaagtcagaa gaagccaagc ccggcaaaac acgggtataa
     5521 atctcttgtg cctgtttgcc ttcgtctgat tgaggataag tcaaggccac aaaatttatg
     5581 gcgtttttat aggctaaaaa cccttcaaca tacatcaggg ctgttgcctt caaaagttca
     5641 aactttggta aaatgtcatt gcctgcgtaa cggttgatat attcatcgca ttgggccaaa
     5701 actacctgat aatccccttc ttcaaattgt ttataaagcg ccttatactg aaattcagga
     5761 ctcgaagcat cactggacag ctgtgcttgt ggatttctca aaatctcggc gtaacgcgac
     5821 tcaggatggt tgttaatgat gtccattttc catgagtccg ccaattgttt attatttaaa
     5881 acctcgtaga ttttatacaa atagtattta gagggcagca ccaaacgctc ttgaggttga
     5941 aaggtcaaaa gtttctcgag tttgtctgca gcacgcgtgt attccctgaa tttttctttg
     6001 tacaccaggc ctaattgata ataggcaaaa tttctcgttc gtttcaggga atcgatgacc
     6061 aaagaatctg taggaatacg accgatgtag gtgttaggat ccataatggt gcgccgttca
     6121 atggcaattc cttcttcttc agcggccatt tcatcggcgc ccggggtaat ggtccccttg
     6181 cttgcgttac gccaattatc ctctaaaccg cgtttgcccc agatgcttct aaattcttgt
     6241 tttccatagg ccacggtcgt gctgttgtaa aaataaaaag tggccccact gctgtttttt
     6301 cccgcctttt tggtataaaa ctcattgttc tgttctcgct tttcgcgttt ggccgtagca
     6361 atagaatcgg ctttggccgc agcgatcaat tgttccgtgt aggctttaaa ataagccaat
     6421 tgctcttccg gactcatggc aacaagtccg agaattgaat cattaaccgc cgcaatacgc
     6481 tcatatttaa tgacatcaga aaggttttcc cgtctttttt tcatgcgacg ccatgtgcgt
     6541 gagttttcct ctaaaaacgt cagggtgctg tcgtagtatt gacctgcttt ttggtattcg
     6601 gccaggtcaa aattaatgtc ggctaaagtg ctgtagttgt tggcctgtag ttgacgatct
     6661 tcgttgtaaa actcaatcga cttattgtaa tacgctaccg cggtgtcggt atttttcatg
     6721 attcggtaaa cattacccgt ttcatgaaaa atcacgtctc gatatggtct gttttcacgg
     6781 tcttgaccta aatcccaaag taattccttc agggcaaccg tgtccccttg agcatagtta
     6841 aagtttttga cttgttctaa aaacgagcgc acataatagg ttcgtgaggt attgcgcttt
     6901 aagtcgatta ctttttgaaa ggcgagattc gcgctgtctg gctgtgacaa tctattttgg
     6961 atttgaccct cgataaatcg ataacgcccc tgaagctcct tgtctttgat catgctcgcg
     7021 gccaacttaa tcatgggcag ggccgcgggc aaggagtcca gattaatata ggcttgggcc
     7081 aaaatagccg ctgcatcggc cttgtcttga tccgttaggc cttccttgcc aaagagctcc
     7141 atgagttctt tgatggcaaa ctcttcattg cccaattgta tgcttgattt agctttccac
     7201 atacgggcct cgttgatgct atttgagctc gggtaacgat tgagtataaa attaaatgcg
     7261 tcaatcgccg gaataaatcg ctggccataa tagcgcgcct tgccgagcat catgtaggcc
     7321 tcgtctattt gtggattata ttctttgcca ttgagataaa tagaatgtct ttggatggct
     7381 ttagcggcct tttcctcagc ccgattaaag tttgggtttc ctttctcccc aggcttaaga
     7441 atggcctcct tgatttcaaa acgctctaca gggagtactt gccaaaaatt atcgcgataa
     7501 tttgtggcga gttcttcatt tccatcaatt aatgcttctc caccattgta aagggcatta
     7561 aactcggcat taaccgcatg gaaattacgg gtgacaaaag tgtctttctt tctcgaacaa
     7621 gatccgagaa ccacaagcat caaaccaagg agtaaaaaag attgaagtcg tttcactgca
     7681 ttcaagatta taaagacgct aactctaaat ttaagtcttt attattgggt ttttaccaaa
     7741 ggagggtaaa aataccattc tttttgataa gagcctgatt ttagggtcaa aaatagggga
     7801 ttatgttctt gtgcaacact tatttaaacg cgtgaatttg tatttttgaa aaaaaattgt
     7861 tcatgacgca tgctatagaa ttgaccgtaa ctcaaaaacg acccctaacc ccgagttctg
     7921 tggagttgac tcttgcggtc ccggaggaat tacaaacgaa ttttgccttc aaagcggggc
     7981 aatacttgac cctaattcaa gagatagacc acgcggaagt ccgccggtct tattcccttt
     8041 gttctgcccc gagtcaaaat acttggaagg tgggcataaa aaaagtgtcc ggaggcacct
     8101 tttcaacttg ggcccatgat gttttaaaag aaggcgcgtc gttaagtgtt ttagcgcctc
     8161 aaggccactt tataatcagt ccctctgcag aagaccaaca gcattatctt ggattcgccg
     8221 ccggcagcgg gatcacgccc attatgggta tgattcaaga agttatggcc cttgcgccct
     8281 tggctaaatt cactttggtc tacgcaaacc aatcccctga agaagccatg tttttagagg
     8341 agcttaaact gctcgaaaac aaccatccag accgctttaa aatgatcttg ttttattctc
     8401 gcgcctcggt tcagaatacg cgttttgggc gtatagaatc agggaccata aagcacttgt
     8461 ttcaaaatga attggctgga gtgacctttg atcaattttt actgtgcggt cctgaacaga
     8521 tgatccaaac ccttaaggag gttctgccgc agttcggcgc ttctgctgac cgcatacacg
     8581 atgaattgtt ttttagcagc gctgaaggtg ccctggacgt taaagaaggg caatgcgctt
     8641 tgaccattgt gctcgatggc gaatccacag tgctgcatat cgacaaaaac accccggttc
     8701 tagatgctgc actcaagcac gatctggacc ctccttattc ttgtcaaggc ggggtttgta
     8761 gttcctgcat tgcccaagtg acgcaaggcc aagcacaaat gataaaaaac cagattttaa
     8821 ctgatagtga ggtggccgag ggcttggtcc tcacctgtca ggccttagcg caaagtgatc
     8881 agcttactgt ggattacgat caggcctaac ccaaaaggtc ctcgactttt tgaacgatat
     8941 cttccaccgg gatactgcgc atcaacgggg catagccttt ggggagtttg ttcccataca
     9001 cggatgtggg tatttttgga tattgacggc gatcggcata taattgtcgc ttaaggcctt
     9061 ggccaaacgg cataaagccc aaactaggat gtgtggcgcc ccaaagggtc aacacaggaa
     9121 ggccaaagtt cgccgccaaa tggccattac cactgtccat ggcaatcatt aaatctaaag
     9181 tgctcatcac ttccaactct tgagcaaaag tccactttcc ggccaagaca tgaatccctt
     9241 tttgatcttt ggccagggcc gttaattgcg ctgcctcttg gcctggggcg ccgaagagca
     9301 aaacttgatg gcctttttga attaaggctt ggcagagggt cttagcaaga tctaaaggat
     9361 aggttttgcc cgcaaaggcc gcaaatggcg caaatccaat acacgccccg ctttgagtga
     9421 ttgaagttct ttttgtcttt aaagaatcta aaaagtcctg caccagcg
//
LOCUS       DPUP01000014            2621 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11260,
            whole genome shotgun sequence.
ACCESSION   DPUP01000014 DPUP01000000
VERSION     DPUP01000014.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            57..485
                     /locus_tag="DHV98_00550"
     CDS             57..485
                     /locus_tag="DHV98_00550"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HCK04895.1"
                     /translation="MKFTPDELVVEPKKWLESKDFNGLYHKKSQDKTTTTRPKSMERS
                     KTGAPPIIIDLHIEKLTKNHNRLAPWEILDFQMESARNQLEWAINKRKQRIIFIHGIG
                     EGVLKAELETLFRRYDNIRFYPANAMEFGAGAIEVYRLQT"
     gene            complement(496..1410)
                     /locus_tag="DHV98_00555"
     CDS             complement(496..1410)
                     /locus_tag="DHV98_00555"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04896.1"
                     /translation="MKRKTSTIHYLFILLSFAVFSSCDDGDVAVQSFDFDNQSLSYCD
                     NDQSILFYVRNSSGTEAVLADLTLNLANLLNAGVLSYELSGNTNNVTYRIFNASADPG
                     YFCSAIPPTSPTVIDELIATSGRAEMLVVINKDDLDGLVADDELPLDQDTDGDGLFDY
                     IDFDDDGDNIPTAFELDVFNTDGDNNPLTNPLDTDQDGIPNYLDPDDDGDGILTIDED
                     LNGDLDPTNDFTDPSIGPDYLNANVFLSTPQGAYREHNYQVVSSIDLTLLDLVLTASG
                     REIIKEVLFMGSIPSFLTTTVTQTPTRD"
     gene            1492..>2120
                     /locus_tag="DHV98_00560"
     CDS             1492..>2120
                     /locus_tag="DHV98_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010520106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCK04897.1"
                     /translation="MPKVYLDNAATTAVRPEVVATMTEVLQNEYGNPSSTHNIGQSSK
                     AILEQCRKDIAKMFKAHPGEIIFTSGGTEADNLVLRAAVRDLNTQVLITSPIEHHAVL
                     HTAEALAQEYNITLELVDIDIQGAVDLAHLEALLEQYQGQKVLVSLMHVNNEIGVILP
                     LKRVADLCKTFGALLHSDTVQSIGHYPIDFSEIPLDFAAVAAHKFHGPKG"
     assembly_gap    2121..2367
                     /estimated_length=247
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2368..>2621
                     /locus_tag="DHV98_00565"
     CDS             <2368..>2621
                     /locus_tag="DHV98_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009415886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HCK04898.1"
                     /translation="HKFHGPKGVGFAFIRRGSGLNPMILGGGQERGMRAGTEPVYAVA
                     GMTKALECAYHHLEQEAAYVRSLKERFISGVSALPGVRLNG"
BASE COUNT          721 a          518 c          522 g          613 t
ORIGIN      
        1 gcgaccaccg agatctacac tctttcccta cacgacgctc ttccgatctc tttccgatga
       61 agtttactcc tgatgagttg gtggtcgaac ccaaaaaatg gcttgagtca aaggatttca
      121 atggtcttta ccataaaaaa tctcaagaca aaaccacgac tacacgtcca aagtccatgg
      181 aaagatcaaa gacaggggcg cccccgatca tcattgactt gcatattgag aaactgacta
      241 aaaaccacaa cagactcgcg ccatgggaga ttttagattt tcagatggaa tctgcacgaa
      301 accaattaga gtgggccata aataaacgaa aacaacgaat aatatttatc cacggtatcg
      361 gtgaaggggt gcttaaggca gaattagaaa ccctgtttcg gcgttatgac aatatccgat
      421 tttatccggc caatgccatg gaatttgggg cgggcgccat tgaagtgtat cgacttcaga
      481 cctagagtct tataattaat cgcgagtagg ggtctgagtc actgtggtgg tcaaaaaact
      541 cggaatggac cccatgaaca aaacctcctt aataatctcg cggccagagg ccgtaaggac
      601 caaatccaaa agtgtcaagt caatgctgct caccacttga taattatgct cacggtaagc
      661 accttgtggt gtgcttaaaa atacatttgc attcagataa tctggaccta tgctcgggtc
      721 tgtaaaatca ttagtcgggt ctaaatcacc gttcaaatct tcgtctatgg tcaaaatgcc
      781 gtccccatca tcatcagggt ctaagtaatt cgggatcccg tcttgatctg tatctaaagg
      841 gttcgtgagc ggattattgt ccccatcggt gttaaataca tcgagttcaa atgccgttgg
      901 gatattgtcg ccatcatcat caaaatcgat atagtcaaag aggccatcgc catcggtatc
      961 ctggtccaac ggcaattcat catcggcgac taaaccatct aaatcatctt tattgattac
     1021 aacgagcatc tcggcacgac cagaagttgc gataagttca tcaataaccg ttggacttgt
     1081 aggcggtatt gccgaacaaa aatagcccgg atcagccgat gcattaaaaa ttctataggt
     1141 cacattattc gtgtttcctg agagttcata actcaaaaca cccgcgttga gtaaattggc
     1201 caaattcaag gttaaatccg caagcactgc ttcagtgcca gaactattac gcacataaaa
     1261 aagtatgctt tgatcattat cacagtaaga caaggactga ttgtcaaaat caaaggactg
     1321 aacggccaca tcaccatcat cacacgagct aaaaacggca aatgacaaaa ggatgaacaa
     1381 ataatgtatt gtgcttgttt ttcttttcat tgaaacaaag taacagaaaa tgaataaaat
     1441 gatgattggt tattgagtga atattttact tttggaaaca aataacaact aatgccaaag
     1501 gtatacttgg ataacgcagc aaccacagcg gttcgaccag aggtggtagc gaccatgacc
     1561 gaagtgttgc aaaacgaata cggcaatccg tcttcgaccc acaatattgg tcagtcttca
     1621 aaagcgattt tagaacaatg ccgtaaagac attgcaaaaa tgtttaaggc acacccgggt
     1681 gaaattattt ttacttcggg aggaaccgag gctgacaatt tagttttaag ggctgcagtg
     1741 cgcgacttaa atactcaagt gcttattacc agccccattg aacatcatgc cgtgttacat
     1801 accgccgaag cactggctca ggaatataac attactttag aactggtgga cattgatatc
     1861 cagggcgctg tggatttagc ccacctagaa gcgctacttg aacaatatca aggtcaaaag
     1921 gttttggtaa gcctgatgca tgtcaataac gaaataggcg ttattcttcc tttgaaaagg
     1981 gtagccgatt tgtgtaaaac attcggggca ctgcttcata gtgatacggt tcaatccata
     2041 ggacattacc ccattgattt ttcagagatt ccccttgatt ttgctgccgt tgccgcccat
     2101 aaatttcatg ggccaaaagg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnncat aaatttcatg ggccaaaagg cgtaggattc
     2401 gcttttattc gcagaggatc cggtctaaat ccaatgattc ttggcggggg tcaagagcgg
     2461 ggtatgcgcg cagggaccga accggtttat gccgtggcag gcatgaccaa agcccttgaa
     2521 tgcgcgtatc atcatttaga acaagaggcg gcttacgtgc ggtccctaaa agagcgtttc
     2581 atcagtggag tttcggcgtt gcccggggtt cggttaaatg g
//
LOCUS       DPUP01000015           11119 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5685,
            whole genome shotgun sequence.
ACCESSION   DPUP01000015 DPUP01000000
VERSION     DPUP01000015.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 11119)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 11119)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11119
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..1195)
                     /locus_tag="DHV98_00570"
                     /pseudo
     CDS             complement(1..1195)
                     /locus_tag="DHV98_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013622240.1"
                     /note="heat shock protein 70; assists in folding of
                     nascent polypeptide chains; refolding of misfolded
                     proteins; utilizes ATPase activity to help fold;
                     co-chaperones are DnaJ and GrpE; multiple copies in some
                     bacteria; frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
     assembly_gap    389..471
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1389..2279
                     /locus_tag="DHV98_00575"
     CDS             1389..2279
                     /locus_tag="DHV98_00575"
                     /inference="COORDINATES: protein motif:HMM:PF03279.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis acyltransferase"
                     /protein_id="HCK04899.1"
                     /translation="MNQILYYILYPVLWLFSKLPFRVLYGISSFCYYLLYYVVGYRKK
                     VVLANLKLAIPGLSAEEYERLSKLFFRHMCDLIVESLKSLTISEKELRQRFVYENLEY
                     CDALHEKGLSTFIMCGHYASWEWSFMMPMLVPFHGIGVYKKLKNPHFDRLVRRIRGRF
                     EGVLVPNKEIRKYLNQCNENGVKTMTMVISDQSPKSKSFRHSFEFLGHETPFFTGTED
                     MARKMNYALIYLKIEKVKRGHYKGTVVPISEDANAEEPGAITRKFIKALEEQIRKEPQ
                     YYLWSHKRWKHHAAFQKLMD"
     gene            complement(2314..3725)
                     /gene="glmM"
                     /locus_tag="DHV98_00580"
                     /pseudo
     CDS             complement(2314..3725)
                     /gene="glmM"
                     /locus_tag="DHV98_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295770.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
     assembly_gap    3679..3698
                     /estimated_length=20
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3803..4396
                     /locus_tag="DHV98_00585"
     CDS             3803..4396
                     /locus_tag="DHV98_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014083793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF479 domain-containing protein"
                     /protein_id="HCK04900.1"
                     /translation="MNFLAHIYLSGEDPEVQLGNFMADAVKGKTYRNFKPKVQSGILL
                     HRFIDSYTDAHPIFRQSTSRLHGKQFGHYSGVIMDLFYDHFLAANWSEFHPKPLEVYA
                     SEFYQVISQYKETTPERTQHLIPYMISQNWLLQYQSIKGLNNILGQMNRRTKGRSNMD
                     QAAVELQMHYPLFEQEFYDFFKILQKEASAELNRLTV"
     gene            4491..>5427
                     /locus_tag="DHV98_00590"
     CDS             4491..>5427
                     /locus_tag="DHV98_00590"
                     /inference="COORDINATES: protein motif:HMM:PF01019.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCK04901.1"
                     /translation="MLMILRCFKRDVKIGAMFILLSLGCQPKHPLSPILLGVTAENAM
                     VVSARKEASAIGLSVMARGGNAFDAMFATELALAVVYPYAGNLGGGGFMVYRLADGST
                     GSLDYREMAPSAAHRDMFLDRSGNHDTAKSTVGGLAIGVPGTIKGIFAAQKKFGLLSV
                     EALMNPVIELAEKGYVVTQKQCERLAQYREIIRQTTGTQTLYTRDINPGDTIKNLALA
                     QTLRRLRDQGQEAFYQGDMAEHMSTYIQAKGGVIQSEDFEHYKVHWRDPVSFQYEDLT
                     ITSMGPPSSGGICLGQIMGMLEPYDFDDLDHNNALY"
     assembly_gap    5428..5578
                     /estimated_length=151
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5579..6358
                     /locus_tag="DHV98_00595"
     CDS             <5579..6358
                     /locus_tag="DHV98_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HCK04902.1"
                     /translation="QLLTEAERRAYADRSHYLGDPDFVSIPTEQLLSRAYLEQKMASF
                     DPKRATASEHIAHGPLIGHESDETTHYSIVDPFGNAISVTTTINGAYGSKLFDPELGF
                     FYNNEMDDFSAKPGTPNMFGLIGGTANAIAPGKRMLSSMTPTIVTKQGELWQVLGSPG
                     GSTIITTVLQIILNTHHFNMGMQQAVNQPRMHHQWLPDLIQFESEGFEQKLLDSLEQK
                     GYQTIQKEYQIIGKVDAIMRHSTGILEAGADPRGDDTALGF"
     gene            6469..7491
                     /locus_tag="DHV98_00600"
     CDS             6469..7491
                     /locus_tag="DHV98_00600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04903.1"
                     /translation="MAKRISITRTLNTLPLAISRSEELSLFLVTRHMLDVDPAIALTL
                     DRHAPLMIGISAGLSALLMVYLAIAAVFHKNTRMQAIETLSVFTQKMHYFREIIEILL
                     RSKMWLPGLKEYLEEEYEGLTFFQVKEFYNGKSKLAIEFMEEHHQYNDTENLYLEFKS
                     LLMTHPLEPIKGDHVVYPEVYDKAIVQQWLRHKCGSGLWYYFGYKYGEFKGALDYNAV
                     FERHQEKIMNLALSISNEAFQDSSFNEVFLAKLGEYMNQEIMPKLLLYRDQTQTNLPA
                     LMNYLYAIFATLMGFGVLLPMIALLFQLSLSFLVFGISVTLSVLVYVALGLYPFLYRE
                     ANAKKA"
     assembly_gap    7682..7774
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <7775..>10521
                     /locus_tag="DHV98_00605"
     CDS             <7775..>10521
                     /locus_tag="DHV98_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HCK04904.1"
                     /translation="GKSSLAFDTIYAEGQRRYIETFSAYARQFLGNLERPDVDKIEGL
                     SPVIAIEQKTTSKSPRSTVGTITEIYDFLRLLYARASDAYSYETGERMVRYTDDQIQE
                     LIYSDFKDKSIIVLAPVVRARKGHYRELFESIAKQGFLKVRVDGEIKDITKGMKVDRY
                     KTHDIEIVIDRLKITGGENQDQRLKGAIETAMDYGEGILMVLTQAKIEEAQTNKPRYF
                     SRSLMCPTTGISYATPEPNNFSFNSPKGMCPHCKGLGSLHEVNRQKIIPDPTLSIKKG
                     AIAPYEKQANSWITKQLELIAQHFEADLNTPFEALPVAMQEAILHGIQTTYELPSKTL
                     GITRSFKIDFDGIIPFIEATFDNKDSRQLRRWAKSYMDKKTCMVCHGSRLRKESQFFK
                     IDHKSIADLAEWDINNLIEWIRLVPQKLSPAQGVIAQEVLKEVETRLQFLRDVGLSYL
                     CLNRSAKSLSGGESQRIRLATQIGSQLVGVLYILDEPSIGLHQRDNEKLIKSLEQLRD
                     LGNSVLVVEHDKDMILKADELIDMGPAAGKHGGLIQWQGPPQKLASANTLTADYLNGR
                     KQIEIPSNRRTGNGKMLSLYGASGNNLRQVDLHLPLGCMIGVTGVSGSGKSTLINETL
                     YPILNAHFFNGVREAQAYKRIEGLEHLDKVIDINQSPIGRTPRSNPATYTGVYSEIRN
                     LFAKVPEALIRGYKPGRFSFNVKGGRCETCQGAGLKVIEMNFLPDVYVACDACQGHRY
                     NRETLEIRYKGKSIYDVLEMTIEEACVFFEPIPKIHRTLKTIEDVGLGYITLGQQSTT
                     LSGGEAQRIKLATELAKRDTGNTIYILDEPTTGLHFEDIRVLLKVLSKLVNKGNTIVV
                     IEHNLDVIKTVDYIIDLGPEGGHGGGQIMGAGTPEDFVKTTQSHTADFLKHELQNTSI
                     S"
     assembly_gap    10522..10611
                     /estimated_length=90
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            10673..>11119
                     /locus_tag="DHV98_00610"
     CDS             10673..>11119
                     /locus_tag="DHV98_00610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00730"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HCK04905.1"
                     /translation="MGEFVEGYEKLAKIGPCVSIFGSARTKTDNPYYGLTERIAKRIT
                     DMGFGVITGGGPGIMEAANKGAFENGGTSVGLNIELPFEQQSNPYINKQNSIDFDYFF
                     VRKVMFVKYAQGFVVMPGGFGTLDELFEAITLIQTKKVDKFPIILVG"
BASE COUNT         3085 a         2410 c         2290 g         2897 t
ORIGIN      
        1 acatctaaaa gaagaacatc ttttacatct cctgttaaaa cacccccctg gattgctgca
       61 ccaatggcca caacctcatc aggattcact cctttattag gcgcttttcc aaaaaacttc
      121 tctacggctt gctgaactgc gggaattcgt gttgatccac ccactaaaat aatttcatcg
      181 atatcgcttt tgctgagtcc agcggccttc atcgcttttt cgcaaggcgc aatggtacgc
      241 tttactaaat cttcgatgag ttgctcaaat ttcgcacgac tcaaagtttt taccaagtgt
      301 ttcgggccac tagccgtagc ggtaacataa ggtaaattga tttcggtttg ggcggaagaa
      361 gacaattcga ttttggcttt ttcagcggnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncttcgcttt
      481 ggaattcatc ggctagccaa ttgatgattt tttgatcaac atcatcaccc cctaagtgtg
      541 tgtctccatc ggtcgctaaa acttcaaaca ccccatcccc taactcgagg atagaaacgt
      601 catgggttcc tccaccaaaa tcaaagacaa caattttttg gtcggtattc tttttatcca
      661 aaccataagc caaagctgct gcagtaggct cgttgatgat ccgctctact tttaatccag
      721 cgatttcacc tgcctctttg gtggcttggc gctggctatc gttaaagtaa gcagggacag
      781 ttattaccgc acgactcact tcttgaccga tataatcttc ggccgttttc ttcattttct
      841 gaagaatcat cgcactgagt tcttgaggcg tatacaaacg accatcaata tcaacacgag
      901 gcgtatcatt atctccttga gctactttat acgccgctct ttttgcttct tcagacgatt
      961 cagagtattt atttcccatg aatcgtttga tcgaagaaat cgttttggtt gggttggtta
     1021 ccgcctgtct tttggctgga tcaccgactt tgatttctcc tccctctaca aaggcaatga
     1081 cagaaggtgt ggttcttttg ccctctgcat tggggatcac agtaggctca ctaccctcca
     1141 ttacagagac acatgaattg gtagttccta agtctattcc aattatttta ctcataatat
     1201 ttatcttaac aattaaggat tgcgatttaa tttcatctct ggaaagtcaa gtttcatgcc
     1261 ataggcctgt atatgacagc ctgtcagtag actaacatga aaaaatgtag ctttggcgga
     1321 atattgggat taagtggctg acaaaaaata caaagaggcc agaaaaattc tttagtttta
     1381 cactctgcat gaatcaaatt ctctactata ttctttaccc agttttatgg ctgttctcca
     1441 agttgccttt tcgggtgctc tacgggattt ctagcttttg ctactaccta ttgtattatg
     1501 tggtgggata cagaaaaaag gtcgttctag cgaatctaaa attggccata ccaggtttat
     1561 cagctgaaga atatgaaaga ctgagtaaac tcttttttcg acacatgtgt gatttgattg
     1621 tggagagcct caagagtctt accatttcag aaaaagaatt gcgccagcgc tttgtttacg
     1681 aaaatctaga gtattgtgat gcattgcatg aaaaagggct cagcacattt attatgtgtg
     1741 gtcattacgc gagttgggaa tggagtttta tgatgcccat gctggtgcca tttcatggaa
     1801 tcggcgtgta taaaaaatta aaaaatcctc atttcgatcg attagtgaga cgcattagag
     1861 ggcgttttga gggcgttttg gtgcccaata aagagatccg taaatatctg aatcagtgta
     1921 atgaaaatgg cgtgaaaacc atgaccatgg tcatttctga tcaatcccca aaatcaaaat
     1981 catttcgtca tagttttgaa ttcttaggtc atgaaacccc attttttaca gggacagagg
     2041 acatggcgcg caaaatgaat tacgcactga tttatttaaa aatagaaaag gtgaaacgcg
     2101 ggcattacaa aggaaccgtt gttcccatta gtgaagacgc caatgctgaa gaaccaggcg
     2161 cgattacccg taaattcatc aaagccttgg aagaacaaat acggaaagag cctcagtatt
     2221 atctttggtc acataaacgt tggaaacacc acgcagcgtt ccaaaagctc atggattaat
     2281 cccgcaacgc gtctttatcc gataatttaa gacttaaatt ccagccaatt cttttaactc
     2341 attgacaaaa cgcagggcca aatcatcagc gctttgttga tctgtcgcct ctgtatagat
     2401 acgtattatc ggctctgtat tgctcttgcg caaatggacc caagaatttt caaaatctat
     2461 ttttacgcca tcgacggtat tgactgattc actggcctgg taggtttggg ccatagtctc
     2521 cataagttga tcgacgtcca aatctggggt taaagccact ttatttttac tcatggcgta
     2581 aaatggataa cgcgctttca acctactgac agaaatatct agatgggcca aatgacttaa
     2641 gaacaaggca atccccacca aactatcccg tccgtaatgt aactctgggt aaataatgcc
     2701 cccgttgcct tcaccaccaa taaccgcaga agtttctttc atcatggtga cgacattgac
     2761 ctcaccgaca gcactggccc gataacgccc cccttgggca tgcgtcacat cgcgcaatgc
     2821 acgcgaagag gacaggttag aaacggtatc tccaggagtt tttgacaaca cgtagtccgc
     2881 cacggccacc aaggtgtatt cttcgccaaa catatcccct ttttcatcaa ctatggccaa
     2941 tcgatcaaca tccggatcaa caacaaaacc caggtgggcc ttgtgatcaa ccacagcctc
     3001 catcaaatcg gttaaatgtt cctttaatgg ttcgggatta tggggaaatt gtccatttgg
     3061 ggtacaatga atttctatgg tctgaacccc caatgctttg agcagtcttg ggacggctat
     3121 tcctccagta gaattaacgg catccaccac gacacggaat ccacaagatt ttatggccgc
     3181 acgatccaca agcggtaagg ccaaaatagc ctcgatatgt ttatcgatat acgtatcgtt
     3241 ttgagtgatc agcccgagtt catcgacggc actaaaatca aagcgctcgt tctgcgcaat
     3301 ctctaaaata gaagccccgg cctccgcgtc cagaaattct cctttgtgat tcaacagctt
     3361 caaggcgttc cactgtttag gattgtgact tgccgtaaga ataatccctc cttgggctga
     3421 ttccataggg acggcaacct caacagtggg tgtggtggaa agaccaagat cgattatgtc
     3481 aattccttgc ccaattaaag tttgcatcac caaagactga atcatatcgc ctgaagggcg
     3541 cgcatcacga ccaataacca ctttataggg cccactggga taaacgcctt taagccactg
     3601 cccgtaagcc gctgcaaatt taacggcatc aacaggggtt aaattctctc ctacagttcc
     3661 accaatggtt ccacgaaann nnnnnnnnnn nnnnnnnntc cagaaattga cttaatcagg
     3721 gtcataattt ttgtttatcg gttaattata aggtgtaaaa ttacggatta tctgagcatt
     3781 attttttccc taattttaat ccgtgaactt tttagcacac atatatctct caggcgaaga
     3841 tcctgaagta caactcggca attttatggc cgatgctgta aaagggaaga cgtatagaaa
     3901 tttcaagcca aaagtacagt cgggcatact tttacatcgt tttatcgata gctacacgga
     3961 cgctcatccc atatttcgtc aaagtacaag ccgattgcac ggaaaacaat ttggtcatta
     4021 ctcaggagtg atcatggacc tattttacga tcatttttta gcggccaatt ggagcgaatt
     4081 tcacccaaaa ccccttgagg tttacgcctc agaattttac caagtcattt cccagtacaa
     4141 agagacaaca cccgagcgaa cgcagcactt aattccttat atgatcagtc aaaattggct
     4201 attgcagtac cagagcatta agggcttaaa caacattctc ggccaaatga atcggcggac
     4261 taaaggccgt tcaaatatgg atcaggccgc cgtcgaactg caaatgcatt atcctttatt
     4321 cgagcaggag ttttacgatt ttttcaaaat acttcaaaaa gaagcctccg ccgaattaaa
     4381 ccgtttaact gtttaaccgt tcagccctat tgggctgagt cccaaatttg ataacagggt
     4441 aaaggggaag tttattttgg gcgacaattc aaaagttttt cattagtttc atgctcatga
     4501 tattacgatg ttttaagcgc gatgtgaaga ttggcgcgat gttcattctt ttaagcctag
     4561 gatgtcaacc caaacacccc ttgtcgccta tcctactcgg ggtaacggca gaaaatgcca
     4621 tggtggtctc tgcacgaaag gaagcttcgg cgataggatt gtctgtaatg gcccgaggcg
     4681 gcaatgcctt tgatgctatg tttgccacag aattggcctt agccgtggtc tatccttatg
     4741 cgggcaattt aggtggaggc ggatttatgg tctatcgcct tgcagatgga tcaacaggaa
     4801 gtctcgatta cagagaaatg gcgccgagtg cggcccatcg cgatatgttt ttagatcgct
     4861 caggcaatca cgacacggcc aaaagtactg tcgggggcct cgcaatcggg gttccaggaa
     4921 ccattaaagg catctttgcc gcccaaaaaa aattcggtct tctctctgtc gaggccctaa
     4981 tgaatcccgt cattgagctt gccgaaaaag gatatgtcgt aacccaaaaa caatgcgagc
     5041 gcttggcaca gtatcgcgag atcatcagac aaacaaccgg gacccaaacc ctgtatactc
     5101 gcgacataaa tccaggggac accatcaaaa acctagccct tgcacagacc ttaagacgcc
     5161 tgcgagatca aggccaagag gccttttacc aaggcgatat ggccgagcac atgagcactt
     5221 atattcaagc caaagggggc gtgattcaaa gtgaggactt tgagcactac aaagtccatt
     5281 ggcgagaccc ggtgagtttt caatatgaag atttgaccat tacctctatg ggacctcctt
     5341 caagtggtgg aatttgtctc ggacaaatca tgggtatgct tgaaccctat gactttgatg
     5401 atttagatca taataacgcc ctttaccnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnca
     5581 actccttacg gaggctgagc gtcgggctta cgccgatcga agccattatt tgggcgatcc
     5641 tgattttgtt tcaatcccta cagagcagtt actcagccga gcctatttag aacaaaaaat
     5701 ggcctccttt gatccaaaga gggcgactgc atcagaacac attgcacacg ggcctttaat
     5761 cgggcatgag agcgatgaga caacccacta ctctattgta gacccttttg gcaatgctat
     5821 ttcggtgacc accacaatta atggcgccta tggttcaaaa ttattcgatc ctgaactcgg
     5881 attcttttac aataacgaaa tggatgactt tagtgcaaaa ccgggtacac caaatatgtt
     5941 tggtttgatt ggcggcacgg ccaacgccat cgcgcccggt aaaagaatgt tgagctctat
     6001 gaccccaacg attgttacca aacaggggga actttggcaa gtattaggct ccccgggggg
     6061 ctcgaccatc atcactacgg ttctgcaaat cattctcaat acccatcatt tcaatatggg
     6121 catgcaacaa gcggtaaatc aaccgcgcat gcaccaccaa tggctgcccg atctaattca
     6181 atttgaatcc gaggggtttg agcaaaaatt acttgactca cttgagcaaa aaggctatca
     6241 aaccattcaa aaagaatatc aaattattgg taaagttgac gccatcatgc gtcattccac
     6301 cggtattttg gaggccggtg cagatcccag aggcgatgat actgccttgg gtttttaatc
     6361 tcgtcaaggg tatttgtagg taaaatacta cattaattcg ccgaaaccct tatctttgtt
     6421 tgattggact ggtgtgtctt gactcaattc acccgcgaaa atacatcaat ggctaagcgc
     6481 atttccataa cacgcacctt gaacaccttg cctttggcaa tcagtagatc ggaagagcta
     6541 tccttgtttt tggtaacgcg tcatatgctc gatgtggatc ccgctatagc cctgacttta
     6601 gatcgtcacg cgcctctcat gatcggaatc agtgctggtc tatcggccct gctcatggtc
     6661 tatctcgcca tagcggcagt atttcacaaa aacacaagaa tgcaagccat cgaaacgcta
     6721 agtgtattca cccaaaaaat gcattatttc agggagatta ttgaaatttt actgcgctcc
     6781 aaaatgtggc tcccaggact caaagaatac ctggaggagg aatacgaagg actgacgttt
     6841 tttcaagtca aagaatttta taacggcaag tcaaaattgg ccattgaatt tatggaagaa
     6901 caccatcagt acaatgacac ggagaacctc tatttagaat tcaaatcgct gcttatgacc
     6961 cacccattgg aaccaattaa aggggatcat gtggtttatc ccgaggtcta tgacaaggcc
     7021 attgttcagc aatggctccg tcacaaatgt ggctctggac tgtggtatta ttttggttat
     7081 aaatacggtg aatttaaagg ggctctggat tataatgctg tttttgagcg tcatcaagaa
     7141 aaaattatga atttggccct atccattagt aatgaggcct ttcaagattc atcgttcaac
     7201 gaggttttcc tggcaaaact cggtgaatat atgaatcagg aaatcatgcc aaaactcctg
     7261 ctgtatcgag atcaaaccca gaccaattta cccgcactga tgaattatct ctatgccatt
     7321 tttgcgacat taatgggctt tggcgtactg ctgcccatga ttgcattgct ttttcaattg
     7381 tccttgagct ttttagtttt tggcatttct gtaaccttaa gtgtcttggt ctatgtcgcc
     7441 cttgggctat accctttcct ctatcgcgag gccaacgcaa aaaaggccta aatccataca
     7501 ttcaaaaggg ggaagcagat attttttctc ggttatttga gtacctttgc ccctgatgaa
     7561 aaatcctgtc aattttatcg aagtctatgg ggctagagcc cataatttaa aggatataga
     7621 cgtaaaaata ccaagagaat ctctggtcgt gattacaggg ctctccggca gtggaaaatc
     7681 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnggaaaa tcgtctttag cctttgacac
     7801 aatttacgct gaaggacaac gtcgttatat tgaaactttc tcggcctatg cccgacaatt
     7861 cttggggaat ttagagcgtc ccgatgtgga caaaatcgaa gggctttctc cggttatcgc
     7921 cattgagcaa aaaaccacaa gtaaaagccc gcgttctaca gtcggaacga tcactgagat
     7981 ttacgatttt ttacgattgc tttatgcccg ggccagtgat gcttatagct acgagaccgg
     8041 ggaacgtatg gtgcgttaca ctgatgacca aattcaagaa ctaatctaca gtgactttaa
     8101 agataaaagc atcattgttt tggcccctgt ggtgcgcgcg cgaaaaggtc attatcgcga
     8161 attatttgaa agtatcgcca aacagggctt tttgaaagtt cgggtggatg gtgagatcaa
     8221 agacatcacc aaaggcatga aggttgatcg ttataaaact catgatatag aaattgtcat
     8281 tgatcgctta aaaattacgg ggggagaaaa tcaagatcaa agactcaaag gagccattga
     8341 gacggccatg gattacggtg aagggatttt gatggttttg actcaggcaa aaatagaaga
     8401 agctcaaaca aacaagccgc gctactttag ccgatcgttg atgtgtccca ccacgggtat
     8461 ttcctacgcg accccggagc caaataactt ttcattcaac tccccaaaag ggatgtgtcc
     8521 tcattgtaaa ggactcggaa gtctccacga ggttaatcgt cagaaaataa ttcctgaccc
     8581 taccctatcc ataaaaaagg gcgcaatcgc tccatatgaa aaacaagcca actcttggat
     8641 caccaagcaa ctcgagttaa tcgcacaaca ttttgaagcg gacctcaata cgccgtttga
     8701 ggcactgcct gtcgccatgc aagaagcaat acttcacggc attcagacca cctatgagtt
     8761 gccctccaaa acattaggca taacgcgttc atttaaaatt gattttgacg gaataatccc
     8821 ctttatcgag gctaccttcg acaataaaga ctccagacaa cttcgtcgtt gggccaagtc
     8881 ctatatggat aaaaagacct gcatggtctg tcacggctcg cgcttacgca aggaatccca
     8941 gttttttaaa atcgaccata aaagcattgc agacctagcc gaatgggaca tcaacaatct
     9001 catagagtgg atcagattgg tgccacaaaa gttaagtccc gcccaggggg tgatcgccca
     9061 agaagtccta aaagaagttg aaacacgtct tcagttttta cgcgacgtcg gactctctta
     9121 tttgtgctta aacagaagtg ccaaatcact ttctggcggg gaatcacagc ggatacgcct
     9181 tgccacgcaa attggatctc aactggttgg tgtgttgtac attttggacg aacccagtat
     9241 tggcctacac caaagggata acgaaaaact aattaaatct ttagagcagc ttcgtgatct
     9301 cgggaattca gtccttgtgg ttgagcacga taaggatatg atcctcaagg ctgatgaact
     9361 cattgatatg gggcccgccg caggcaagca cggaggactg attcaatggc aaggaccccc
     9421 gcaaaagctc gcttcggcca atacccttac cgcagattac ctcaatgggc gcaaacaaat
     9481 agaaattccg agcaacagaa gaacgggcaa tggaaaaatg ttaagccttt acggtgcaag
     9541 cggaaataat ttgcgccagg tggatcttca tctgccctta ggctgtatga tcggtgttac
     9601 cggtgtttct ggaagtggaa aatcgacctt aatcaatgaa accctttatc ccattctcaa
     9661 tgcgcacttt ttcaatggcg ttagggaagc tcaggcttat aagcgcatcg aaggcctgga
     9721 gcatttagat aaagtcatcg acatcaatca atcgcccatc gggcgcacgc cgagatcaaa
     9781 tcccgcaacc tacactggag tctactcaga aataagaaat ctatttgcta aggttccaga
     9841 ggcgctgatt cggggttata aaccaggacg ctttagcttt aatgtcaaag ggggacgttg
     9901 tgaaacttgt caaggtgccg ggctgaaagt catcgaaatg aattttcttc cggatgtcta
     9961 tgtggcttgt gatgcctgtc aaggacatcg ctacaaccga gaaactctgg aaatacgcta
    10021 caaaggaaaa tctatttacg atgttcttga aatgaccatt gaagaggcct gcgtgttttt
    10081 tgaacctatt ccaaaaattc accgcaccct caaaaccatt gaggatgttg gtttgggata
    10141 cattacttta ggacagcaat caaccacgct ctcagggggt gaagcacagc gcatcaaact
    10201 cgctaccgaa ctggccaaaa gagataccgg aaatacgatt tatattttag acgagcctac
    10261 cacgggactt cattttgagg acatacgggt tttactaaaa gttttaagta aattagtcaa
    10321 caaaggcaac actattgtgg tcattgagca caatttagac gtaattaaaa ccgttgacta
    10381 tatcatcgat ttaggtccgg agggaggtca tggtggcggg caaattatgg gcgcaggcac
    10441 ccctgaagat tttgttaaaa ccacgcaaag tcatactgct gactttttga agcacgaact
    10501 acaaaacaca agtatttcct tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn naaaagaatt
    10621 taaaaactgg aacgagataa aaacaaacga ctcttggggc gtatttaaaa tcatggggga
    10681 atttgttgaa ggctacgaaa aattagccaa aataggtcct tgtgtcagta tttttggctc
    10741 tgcgcgtacc aaaacagaca atccttatta cggccttact gaacgcatag ccaagcgcat
    10801 taccgatatg ggctttggtg tgattaccgg aggcggtcct ggaataatgg aggccgccaa
    10861 taaaggggcc tttgaaaacg gaggaacttc agtaggactg aatatcgaac ttccatttga
    10921 acaacagagc aacccctaca ttaataaaca aaacagtatt gatttcgact atttctttgt
    10981 gcgcaaagta atgtttgtaa aatatgcgca agggtttgtg gttatgccgg ggggattcgg
    11041 cactctggat gaactttttg aagcgatcac tttgatacag accaaaaaag tagacaaatt
    11101 ccccattatc cttgtaggc
//
LOCUS       DPUP01000016            3668 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_30969,
            whole genome shotgun sequence.
ACCESSION   DPUP01000016 DPUP01000000
VERSION     DPUP01000016.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3668)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3668)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3668
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..798)
                     /locus_tag="DHV98_00615"
     CDS             complement(<1..798)
                     /locus_tag="DHV98_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013406868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HCK04906.1"
                     /translation="MGTKKYDVIAFGRSSIDLYSQNIGSAFNDIKGFDAFVGGSPLNI
                     AVGCARLGVNATLLTAVGEDKVGEFIVSFLNNEGVNTHCIPIKKYARSSAVVLGIEPP
                     DKFPLVYYRDNAADSQVTIDEVDLASIPDYRILLINGTAMNMEPSRSATFHAAEIASK
                     NNVDVVLDLDFRADQWHDYRAFGITMRAVLPLVKIAIGTEEEILAATLENTSQVTIKH
                     QQISAPKISGNINASIKRLLSTGIEVLIVKRGREGASIYKKEGTIEDV"
     gene            complement(811..>1069)
                     /locus_tag="DHV98_00620"
     CDS             complement(811..>1069)
                     /locus_tag="DHV98_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019944396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HCK04907.1"
                     /translation="IQQVYTKDRSLDEIVRPRHNNVVMIPKGFHPVVAEHGFHCYYLN
                     FLAGTDQCLANTTDPEHEWIYDSWTSKDKRLPLVSAKMNQQ"
     assembly_gap    1070..1178
                     /estimated_length=109
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1179..1790)
                     /locus_tag="DHV98_00625"
     CDS             complement(<1179..1790)
                     /locus_tag="DHV98_00625"
                     /inference="COORDINATES: protein motif:HMM:PF04962.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HCK04908.1"
                     /translation="MVKESSLLIKPKTDSNIYHSISPESANWKYLSFEARIMKRYDTW
                     EHETQENEMVIVLMSGNFKVTSDKGNWETLNGRTDVFSGVAHTLYLPRYSKFTLSATS
                     EVLDIAYGWCRADLDFPAKFVTPEDTPVVIFGGDNATRQFNDLVPPGFGCNSIVVREV
                     YTPSGNWSSFPAHKHDERILAEDGTVLEPIQEETYFYKFQKPEA"
     gene            complement(1796..2740)
                     /locus_tag="DHV98_00630"
     CDS             complement(1796..2740)
                     /locus_tag="DHV98_00630"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015815125.1"
                     /note="catalyzes the formation of glycerone phosphate and
                     glyceraldehyde 3-phosphate from fructose 1,6,
                     bisphosphate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HCK04909.1"
                     /translation="MFLAPKVLFDKCYGKYAIAAVNVFTMEQVLGLFRAGQLADAPFI
                     VQMTPLARNYADSEMLLAMIEAASIIYPKAVYGVHLDHGNEEHAFDAIASGKYNSVMI
                     DASHDDFDTNVVRTKKVVDQAHLMNVFVEAELGVLSGVEDDIAIDRKLARYTRPSEVE
                     RFVSETNCDSLAVAVGTSHGAYKFSSGQGIQFDILKEIQDRLPRFPIVLHGGSAVNIE
                     EIRRINKSGGMLLESAVGVSSKDIGMAIEYGVCKINIATDTRLLWTRIYREFFKDFPK
                     LFDPIIPGKTYMDAYEEFMTQKFELFGARGKASDFIKK"
     gene            2813..3373
                     /locus_tag="DHV98_00635"
     CDS             2813..3373
                     /locus_tag="DHV98_00635"
                     /inference="COORDINATES: protein motif:HMM:PF01979.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04910.1"
                     /translation="MVFIKVCKGLRKYLHAALSTGGMNRLFEKEEWKKNFEFLPDMIK
                     SKWIEAAKKATENQSSEISIAHGEWVLMMVRKMKDYKIKVMAGTDTPIGFLTPGFSLH
                     KELEMLVKGGMLPLEAIESATLLPAKYFKVQDSIGTIEKNMIADLVLLNANPLIDITN
                     TQKIDAVVRNGKFYNRKALDSLLNSN"
     assembly_gap    3388..3507
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1039 a          731 c          599 g         1070 t
ORIGIN      
        1 aacatcttca atcgtaccct cttttttgta tatactagcc ccttctcttc ctctcttaac
       61 aataagcacc tctatacctg tggaaagtaa gcgttttata gatgcgttaa tatttccaga
      121 aattttggga gccgatatct gctggtgctt aatagttact tgtgatgtat tttccaacgt
      181 agcggccaag atttcctctt ctgtgccaat tgcaatttta acaaggggca gtactgccct
      241 cattgtgatg ccaaaggcac gatagtcatg ccactgatct gctctgaaat ctaaatccaa
      301 gaccacgtca acattgtttt tcgaagctat ttcagcagca tgaaaggttg cacttcgaga
      361 aggttccata ttcatggctg taccattgat gagcaaaata cgatagtctg gtatgctggc
      421 caaatccact tcgtcaatag tcacttggct atctgcggca ttatcccggt aatagaccaa
      481 cggaaattta tctggcggtt ctataccaag aaccactgca ctgctcctag catacttttt
      541 tattggaata caatgtgtgt ttacgccttc attgttcaaa aagctaacga taaactcccc
      601 aactttatcc tcgccaactg cggtcagtaa agtggcattg acccccaatc gggcacagcc
      661 aacagcaata ttcaaaggag accctcctac aaaggcatca aaccccttta tatcattaaa
      721 agcagaacca atgttttggg aataaagatc gattgatgat cttccgaagg caatgacatc
      781 atatttttta gttcccattg ttccttttat ttactgttga ttcattttgg ctgatacaag
      841 aggtaacctt ttgtcttttg aagtccatga atcatatatc cattcatgtt caggatcagt
      901 tgtatttgcc aaacattggt ccgttccagc caaaaagttg agatagtagc aatgaaaacc
      961 atgttcggca actacggggt ggaatccttt tggtatcatg accacattat tatgtcgagg
     1021 ccttacaatt tcatccaaag agcggtcttt tgtatatacc tgttgaatan nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnngg cctcaggttt ctgaaattta
     1201 taaaaatacg tttcttcttg aatgggctct aatacggtgc catcttccgc aagaatacgt
     1261 tcatcatgct tgtgcgcagg aaaggaactc caattcccag agggtgtata gacctccctg
     1321 accacaatac tgttacaacc aaagccgggg ggcaccaaat cattaaattg gcgcgtagca
     1381 ttatctcctc caaaaatgac taccggagta tcttcagggg taacgaattt tgcaggaaaa
     1441 tctagatcag ccctacacca accataggca atatcaagaa cttcactggt cgccgacagc
     1501 gtaaatttgg agtatcttgg cagatacaat gtatgggcta ctccgctaaa cacatcggta
     1561 cgcccgttca gagtttccca gtttccttta tcgctggtca ctttgaaatt accgctcatt
     1621 agcacaataa ccatctcatt ttcttgggtt tcatgttccc aggtatcata acgcttcatt
     1681 attctagcct caaagctcaa atatttccaa ttcgccgatt cgggtgaaat actatggtaa
     1741 atattcgagt ctgtttttgg ttttattaat aatgaggatt cttttaccat ttcgtctatt
     1801 tttttataaa atcacttgcc ttccctctag ccccaaagag ttcgaatttt tgtgtcatga
     1861 attcttcgta agcatccata tatgtttttc ctggaattat cggatcaaaa agttttggga
     1921 aatccttaaa aaactcccta taaattcttg tccataaaag ccgggtatcc gtagcaatat
     1981 tgatcttgca tacaccatat tctattgcca taccaatatc tttggaagaa acccctacgg
     2041 cgctttctaa taacattcct ccgcttttgt ttattctccg tatttcctca atatttaccg
     2101 ccgacccgcc atgaagaaca attggaaatc gtggtaaacg atcttgtatt tctttcaaaa
     2161 tgtcgaactg tatcccttgt ccgctcgaga atttatatgc gccatggcta gtgcctaccg
     2221 ccacagccaa gctatcgcaa ttggtttcac ttacaaagcg ctccacctct gaaggtcttg
     2281 tatatcttgc aagttttctg tctatagcaa tatcatcctc tacaccacta aggactccta
     2341 attcagcctc cacaaaaaca ttcattaaat gtgcctgatc tacgaccttc ttagttctta
     2401 ccacatttgt atcaaaatca tcgtgtgagg catcgatcat tacagaatta tatttacccg
     2461 aagctattgc atcaaaagcg tgctcttcat tcccatgatc taagtgaacc ccataaaccg
     2521 ctttaggata tattatagac gctgcctcta tcatggccaa tagcatttct gaatctgcat
     2581 agttccttgc caaaggagtc atttgaacaa taaacggagc atctgcgagt tgccccgccc
     2641 gaaataggcc aagtacttgt tccatggtaa aaacgttcac agcggcaata gcatacttgc
     2701 catagcattt gtcaaataaa actttaggag ctaaaaacat ttaaaaacct ggttctattc
     2761 ttatacaata taatctatta aaaattaagt ataaaaataa tatttaactg ctatggtttt
     2821 tataaaggtt tgcaaaggtt tgcgtaaata cctacatgcg gctctatcaa caggtggaat
     2881 gaatagattg tttgaaaagg aggaatggaa aaaaaacttt gaatttttac cagatatgat
     2941 caaatccaaa tggattgaag ccgctaaaaa agctacagaa aatcagagca gcgaaatcag
     3001 catagcgcac ggagaatggg tattaatgat ggtcagaaaa atgaaagatt ataaaatcaa
     3061 agttatggct ggtactgata ctccgattgg gtttcttacc cctggtttca gtcttcataa
     3121 agaattggaa atgttggtca aggggggtat gctgccttta gaggcaattg aatctgctac
     3181 acttttaccc gcaaaatatt ttaaggtgca agatagtatt ggaactatcg agaaaaatat
     3241 gattgcagat cttgttttac ttaatgccaa cccattgatc gatataacaa atacgcaaaa
     3301 aatcgatgcg gtagttcgta acggaaaatt ttataatcga aaagcacttg acagtttact
     3361 taatagcaat taacctctga aaataatnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnncaa ttaacctctg aaaataaaat tccgtccaaa
     3541 ataatgagta aaatgtactg tgttgttaat tccatgactc gtttttttat cagctttaaa
     3601 agttatacca tttttgttcc attatcaata cgcatttgta tcaactttat ttaaatgtaa
     3661 ttgattaa
//
LOCUS       DPUP01000017            3042 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_34526,
            whole genome shotgun sequence.
ACCESSION   DPUP01000017 DPUP01000000
VERSION     DPUP01000017.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3042)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1006)
                     /gene="alr"
                     /locus_tag="DHV98_00640"
     CDS             complement(<1..1006)
                     /gene="alr"
                     /locus_tag="DHV98_00640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013030268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCK04911.1"
                     /translation="MRPLNATIDPQALIHNFKRVKDFAPNSKVMSVLKANAYGHGLIE
                     SARALNKSEGFSVLTLGEAIELREFGFNQEILMLEGVYEGYEVAIASKLNINVVLHNQ
                     EQLNQILDAKPKKPINVHLKVNTGMNRLGWMPEDLPQVFKVITSAPFIGKVTLMTHFS
                     SADEKEGIASQMKVFNNIQNDHQFDRSVANSAALIRYPESHLEWVRPGIMLYGASPFE
                     DSSINELDLKAVMSLDSQIISIQSLKKGESVGYGSSFVAESPMKIGVVACGYADGYPR
                     HAPTGTPAMVDNVMTSTVGRVSMDMLYVDISKINDVKVGGRVELWGKNVPVDAVAKKA
                     G"
     gene            complement(1010..2383)
                     /locus_tag="DHV98_00645"
     CDS             complement(1010..2383)
                     /locus_tag="DHV98_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008107137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HCK04912.1"
                     /translation="MADNQIDNLKLPPHSVEAEQSLLGGLLIDNESSDKVADVITAKD
                     FYRHDHRIIYQHIVKVIESNQPADIVTVAESLEKNAELATVGGLSYLGLLAENTPTAA
                     NIRGYAQIVRERSIMRSLVQVGSDIAESAYSPQGRDAQQLLDESEAKIFQIAESGKSS
                     NVGFEDIQHLLPRVIEDVERRMQNGSDVIGVATGFTDLDKMTSGLQPGDLIIVAGRPS
                     MGKTSLALNMAEFVAIDRKLPVAVFSMEMASTQLTTRLIGSVGRVDQHKMRTGQLDDD
                     DWEKLTDSLGQLNDAPIFIDQGSALNSYEVRARARRLQRQAGQLGLIVVDYIQLMSPP
                     GGRQSENRATEISEISRSLKSLAKELNVPVVALSQLNRSVEQRPDKRPVMSDLRESGA
                     IEQDADVIMFIYRDEVYNPESPDKGLAEIIVAKQRNGPIGRVKLTFLGKYTRFENYAS
                     TGYDTGY"
     assembly_gap    2553..2674
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2675..2989)
                     /gene="rplI"
                     /locus_tag="DHV98_00650"
     CDS             complement(<2675..2989)
                     /gene="rplI"
                     /locus_tag="DHV98_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018985609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCK04913.1"
                     /translation="MQVILLEKLANLGNLGDVVKVKDGYGRNFLIPQKKAKRATEANK
                     AEFEAQRADLEKQHAALLAAAQKRAKDLEGFKLEVHQKSGMDGKLFGSVTNIDIAEGI
                     NKA"
BASE COUNT          757 a          704 c          613 g          846 t
ORIGIN      
        1 tgcctgcttt ttttgcgacc gcatccacag gaacattctt accccaaagc tccacccgac
       61 ctccaacctt gacgtcattt attttgctaa tgtcgacata gagcatgtcc atcgacactc
      121 gacctaccgt tgatgtcatc acattatcga ccatggctgg tgtgcctgta ggggcgtgcc
      181 tagggtagcc gtcggcatag ccgcaggcta caacaccaat cttcatggga gattcagcta
      241 caaaagatga cccgtacccc acgctctcgc cttttttgag ggattgtatg gaaataattt
      301 gagagtcgag gctcattact gcctttaagt ctagttcatt aatagagctg tcctcaaagg
      361 gcgaggcccc gtaaagcata attcctggcc tcacccattc aagatgactc tcagggtaac
      421 gaattaatgc agccgaattc gccacagacc gatcgaactg atgatcattt tgaatgttgt
      481 tgaaaacttt catttggctt gcaatgccct ccttctcatc ggcgcttgaa aagtgagtca
      541 tcagcgttac tttgcctata aagggggcgg aggtaattac tttaaaaacc tgaggcaggt
      601 cttcaggcat ccaacccagc cgattcatgc ctgtgttcac ttttaggtga acgttaatcg
      661 gtttttttgg ttttgcatct aggatttggt tgagttgctc ttggttgtgc aggaccacat
      721 taatatttag ctttgaagca atcgcaacct catacccctc ataaacccct tccaacataa
      781 ggatctcttg gttaaagccg aactccctga gttcaatcgc ctcacctagg gttagaacag
      841 aaaacccttc agacttattg agcgctctgg cagactcaat gaggccgtgg ccgtaagcat
      901 tagcctttaa tacgctcatc accttgctgt ttggagcaaa atctttaacg cgcttaaagt
      961 tgtgtattag cgcctgaggg tcaatagtgg cgtttaaggg gcgcatatac tagtaaccgg
     1021 tatcgtaacc agtgctcgca taattttcaa agcgagtgta tttgcctagg aaggttaatt
     1081 taacacgacc aattggtcca ttcctttgtt ttgccacaat gatttcagct agccccttat
     1141 caggactctc cgggttatac acttcgtcac gataaataaa cataatgaca tccgcatcct
     1201 gttcaatggc acccgactcc cttaggtcag acatcaccgg tcttttgtct gggcgctgct
     1261 ccacgcttcg gttaagctga gacaaagcaa cgaccggcac attaagttct ttggctaacg
     1321 atttaaggga ccttgaaatt tcagaaattt cagtcgcacg attttcactc tgcctaccac
     1381 cagggggcga cattagctgg atatagtcga cgacaatcaa acctaattga ccggcttgtc
     1441 tttgaagtcg tctcgcacgg gccctaactt cataggagtt taaggcagag ccttggtcaa
     1501 taaaaatagg ggcgtcattt aattggccaa gagagtccgt caacttttcc cagtcatcat
     1561 cgtctaactg tcctgtccgc attttatgct ggtcgaccct gccaaccgag ccaataagtc
     1621 gggtggttaa ttgcgtggag gccatttcca ttgaaaacac agcgaccggt aattttcggt
     1681 cgatagccac gaactcggcc atgttcagag ctaaggaagt tttccccatc gaaggcctgc
     1741 ctgcgacaat aattaaatca cctggttgca ggcctgaggt cattttgtct aagtctgtga
     1801 atccagttgc aacgccaata acgtcactgc cattttgcat ccgcctttcg acatcctcaa
     1861 taacgcgagg aagtaaatgc tgaatatctt caaagccaac gttgctgctt tttcctgact
     1921 ctgcaatctg aaaaattttg gcttccgact catcgagtag ctgttgggca tctctgcctt
     1981 gaggggaata agcactttcc gcgatgtccg atccaacctg gaccaggctc cgcataatgg
     2041 atcgctctct gacgatttgt gcgtaccctc taatatttgc tgcggtagga gtattttcag
     2101 ccaaaagtcc caaataagac aaaccaccaa cagtggcaag ttctgcattt ttttctaaag
     2161 actcggcaac ggtaacgata tccgctggct gattagactc gatgacttta acaatgtgtt
     2221 gataaataat acggtgatca tgccgataaa aatcttttgc ggtaatgaca tcggcaacct
     2281 tatcgcttga ttcgttgtcg attaatagtc cgcctaataa agattgctct gcctcaactg
     2341 agtgaggagg aagctttaga ttgtctattt gattgtctgc cattttatga ttatagcgaa
     2401 taaaaaaaag gctgccctat aagcagccta aaaatattaa aatattttat taggcatctt
     2461 cgcctataac tgttactaaa atatctaccg taacatcttg atgtaacgct aaggtaagcg
     2521 gatagtcacc gatggctttt aatggcccat cannnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnggcttt attaatgcct tcagcaatat
     2701 caatattggt cactgaacca aaaagttttc cgtccatacc cgacttctga tggacttcta
     2761 atttaaatcc ttcaaggtct tttgcgcgtt tttgagcggc agccaataat gcggcatgtt
     2821 gcttctcaag gtcagcacgc tgtgcttcaa actcagcttt attagcttcc gtagcacgct
     2881 ttgctttttt ttgtgggatg aggaagtttc gtccgtaacc gtccttcacc ttaaccacat
     2941 cacctaaatt gccaaggtta gctaatttct ctagtaatat aacttgcatc aatattctcc
     3001 ttagtgcttg tcagtgtatg gaagcaaagc aaggaacctt gc
//
LOCUS       DPUP01000018            9088 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9762,
            whole genome shotgun sequence.
ACCESSION   DPUP01000018 DPUP01000000
VERSION     DPUP01000018.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9088)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9088)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9088
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..383)
                     /locus_tag="DHV98_00655"
     CDS             complement(<1..383)
                     /locus_tag="DHV98_00655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenoylcysteine decarboxylase"
                     /protein_id="HCK04914.1"
                     /translation="MLAGKHILLGVTAGIAAYKTPALVRLLKKEGAEVRVIMTPDARE
                     FVAPLTLSVLSENPVYWTFTDEDAPDQGLWNNHVHLGRWADLFLIAPATANTLSKMAN
                     GACDNLLLAAYLSAECDVYFAPAMDL"
     gene            complement(396..728)
                     /locus_tag="DHV98_00660"
     CDS             complement(396..728)
                     /locus_tag="DHV98_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04915.1"
                     /translation="MSDIRNSDAPVSTTTIDKNQLDAPTGNIYEAISIIAKRAVQING
                     DIKKELTEKLDEFATYNDSLEEIFENKEQIEVSKFYERLPKPHALAVQEWLEQKIYYR
                     NTKDEVID"
     gene            complement(741..>989)
                     /locus_tag="DHV98_00665"
     CDS             complement(741..>989)
                     /locus_tag="DHV98_00665"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCK04916.1"
                     /translation="DNFILDHPGSIYREEAYFGRLESAYELAQNSVSYLVKERLEMAK
                     KYFDSFMKYYSSSAQRGAAEEILLQINTQLQEQTLSTN"
     assembly_gap    990..1047
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1048..1585)
                     /locus_tag="DHV98_00670"
     CDS             complement(<1048..1585)
                     /locus_tag="DHV98_00670"
                     /inference="COORDINATES: protein motif:HMM:TIGR03302"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HCK04917.1"
                     /translation="MNWKDLKFASVLILSILLSGCSEYQKLLRSDDTAAKYTMADSLY
                     KAKKYKKALPLMEQIVPIYRGKPQAEPLMYRYANTFYNLEDYYLAGYQFERFVVSYPK
                     SDSLEMAAYKSAKSYYELSPRYSLDQKDTYIALEKLQGFVDNYPESEYRTGCNDMVQE
                     LKVKLEKKDIETAKQYRRI"
     gene            complement(1707..2579)
                     /locus_tag="DHV98_00675"
     CDS             complement(1707..2579)
                     /locus_tag="DHV98_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HCK04918.1"
                     /translation="MTNLIGTGVALITPFDVQGAIDFEALKRIVNFQIDKGINYLVVL
                     GTTAESVTLTKQEKEAVLAAVLAVNANRVPIVLGVGGNDTQAVVDQLKQVNPEHIAAV
                     LSVSPMYNKPSQPGLIAHFTAVAQVSPVPVLLYNVPGRTASNMLPSTVLKLAAHKNII
                     GIKEASGDLGQAMEILRSAPEGFLVISGDDLIALPMTLMGGDGVISVIGQAYPEEFSQ
                     MIQAGLNGNSARAKELHYDLMPIIEMIFEQGNPSGIKALLNKKGLCENTLRLPLVPVD
                     DSLAQRIEAFSDRR"
     gene            complement(2576..3112)
                     /locus_tag="DHV98_00680"
     CDS             complement(2576..3112)
                     /locus_tag="DHV98_00680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04919.1"
                     /translation="MDILHNLREWLKRKWLSRDLHQALRHRDRSGLNAKCRTLGVLID
                     ERVVPEFDGLYDWYADLNMAPKDIKVFTYLEVKKKLPTLRQNQLTNTDFDWQGHIDNP
                     GAIEFIDTPFDVLLALYEPGNELLDLVVAKSKGKFKVGSQGLNQELFDLSLAVTPERL
                     ALMRSEFVKYMSILNKKL"
     gene            complement(3116..4831)
                     /locus_tag="DHV98_00685"
                     /pseudo
     CDS             complement(3116..4831)
                     /locus_tag="DHV98_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783914.1"
                     /note="too many ambiguous residues; incomplete; missing
                     start; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase (NAD(+)) LigA"
     assembly_gap    4400..4412
                     /estimated_length=13
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4832..4942
                     /estimated_length=111
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4943..5201)
                     /locus_tag="DHV98_00690"
     CDS             complement(<4943..5201)
                     /locus_tag="DHV98_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase (NAD(+)) LigA"
                     /protein_id="HCK04920.1"
                     /translation="MSVADKIKALRAELTQHNYRYYVLDEPVISDYEFDQLLIQLQEL
                     EQANPQFYDPNSPTQRVGGAVTKNFVTVPHDYRMYSLDNSYS"
     gene            complement(5279..6124)
                     /gene="prmC"
                     /locus_tag="DHV98_00695"
     CDS             complement(5279..6124)
                     /gene="prmC"
                     /locus_tag="DHV98_00695"
                     /inference="COORDINATES: protein motif:HMM:TIGR03534"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HCK04921.1"
                     /translation="MTLGNWQAYWNQTLSDTYPKEEIRSLLIRAITDRFNWSAIDLIT
                     RKETVLSALDLDWLNSVLKRLQSLEPMQQILGYTWFCDQKFLVTPDVLIPRPETEELV
                     MYLREHLKGKVVRKALDIGTGSGCIALSLADSMPQTHWSAWDVSTQALTVAKRNQEHF
                     EQQVNWQRQDVLQTWPEEHFDLIVSNPPYIPQNEQYSMDQNVVDYEPHLALFVPQDEP
                     LKFYSEIIQKGFKCLNHGGGLYFECHFEFTQGVAAQMQEMGYTQVKKWKDQWGKWRFV
                     SGLKP"
     gene            complement(6121..6606)
                     /locus_tag="DHV98_00700"
     CDS             complement(6121..6606)
                     /locus_tag="DHV98_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCK04922.1"
                     /translation="MLAIRLIQPDDDPEIGQLIRSVLVEFNVPKVGTAYADPALNCMF
                     ETYQKGHSRYFILTDGHRIYGGGGIAPLENYLESYCELQKMYFDKSVRGKGYGRKMMD
                     LCLSFASAEGYSHCYLETMDYMAQAQKLYRQSGFNYIDGPLGDTGHHACGIRMLKTLF
                     L"
     gene            6638..>7566
                     /gene="ribD"
                     /locus_tag="DHV98_00705"
     CDS             6638..>7566
                     /gene="ribD"
                     /locus_tag="DHV98_00705"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HCK04923.1"
                     /translation="MVNIHEKFMARCLQLAENGKGTTYPNPMVGCVIVKDDAILSEGW
                     HHRSGEPHAEAQAINNIDVNDLAGATLYVNLEPCNHVGRTAACAPLIVASGIKKVVIG
                     SLDTHHKVNGSGIEHLKKHGIAVVSDILTQECRTLNKRFFMFHEQHRPYVTLKWAETK
                     NGLVAPLSKNQLRPVWISNEYARQHTHVLRSKEHAILVGHRTWELDSPKLSAYRWDDN
                     APQIVVLGGEKPKRQDIIWLSSEEHNTVEQVLSKLYELQIQSVLVEGGPETLQRFIDA
                     NLWDECFVYRSQDTWHEGLAGPKIKNPLAPIER"
     assembly_gap    7567..7611
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7659..>7931
                     /locus_tag="DHV98_00710"
     CDS             7659..>7931
                     /locus_tag="DHV98_00710"
                     /inference="COORDINATES: protein motif:HMM:PF01205.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HCK04924.1"
                     /translation="MSSTQDLKTIDRGAIDIVYKDKGSKFIGFAKHVANAEEAMAFFD
                     LLRNQHHTANHCCYAYRLGPQGQEVRANDDGEPTHSAGTPILGQIQS"
     assembly_gap    7932..8003
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <8004..8371
                     /locus_tag="DHV98_00715"
     CDS             <8004..8371
                     /locus_tag="DHV98_00715"
                     /inference="COORDINATES: protein motif:HMM:PF01205.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04925.1"
                     /translation="GQIQSFDLTNTAVAVIRYFGGTKLGVGGLVKAYKATAQLTLAAC
                     SFKLEVVYQKAQLYFNYRDIGTAMHWLKQEQCLIIEQHIDQKCRVQFNLPAQQLRHAQ
                     EFWNSQPEILFEIFKADGY"
     gene            complement(8365..8787)
                     /locus_tag="DHV98_00720"
     CDS             complement(8365..8787)
                     /locus_tag="DHV98_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase"
                     /protein_id="HCK04926.1"
                     /translation="MLCKTTTEIRVRYGETDQMGFVYYGNYALYLEQGRTDWLRKIGF
                     SYKELETQNILLPVTQFSINYHAPGRYDDLLLIETTLVKMPGVKIQFSYVIFNEDKKQ
                     LITAETTLAFVDKNTMKITPAPEYLIEAIAKCKDSLNQ"
     gene            8996..>9088
                     /locus_tag="DHV98_00725"
     CDS             8996..>9088
                     /locus_tag="DHV98_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007809948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04927.1"
                     /translation="MGRTAETVWGNCLSFIEDNISTQAYKTWFEP"
BASE COUNT         2495 a         1992 c         1759 g         2543 t
ORIGIN      
        1 agatccattg ctggagcaaa atacacatca cattctgcag ataaataagc ggctaataac
       61 aggttgtcgc aagcgccatt agccattttg gatagtgtgt tggccgttgc tggagcaatt
      121 aaaaaaagat ccgcccagcg acctaaatga acatgattgt tccagagacc ttgatccggc
      181 gcatcttcat cggtaaatgt ccaataaaca ggattttcgg ataatacaga aagcgttaaa
      241 ggcgcgacaa attctcgggc atcaggggtc atgattacgc gaacctcagc cccttccttt
      301 tttagtaaac gcaccaaagc cggggtcttg taggcggcta tacccgctgt aactcccaac
      361 aaaatgtgtt tacccgctaa catggctcga ggcgtttagt cgattacctc gtctttagta
      421 ttgcgatagt aaattttttg ttcgagccat tcttgcaccg ctagagcatg tggcttaggc
      481 agacgttcgt aaaatttaga aacttcgatt tgttccttgt tctcgaaaat ttcttccaaa
      541 ctgtcattgt acgtcgcgaa ctcatctaac ttctcagtga gttccttttt tatgtctcca
      601 ttaatttgta ccgcgcgctt ggcgataatg gagatggcct cgtaaatatt gccagtcggc
      661 gcatctaatt gatttttatc aatagttgtt gtgcttactg gggcgtccga atttctgata
      721 tcactcatag agatggtata ttagtttgta gataaagtct gttcttgtaa ttgagtattg
      781 atttgaagca atatttcttc cgcagcgcca cgttgggcac tactgctgta atacttcatg
      841 aaactatcaa aatatttttt agccatttca aggcgctctt tcaccaggta agaaacacta
      901 ttttgagcca actcatacgc agactctaaa cgtccaaaat acgcctcttc acggtaaatt
      961 gacccggggt gatcgagaat aaaattatcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnntga tacggcgata ttgtttggcc gtttcgatgt
     1081 cctttttctc gagcttaact tttaactctt gcaccatgtc gttacagcct gtacgatact
     1141 ccgattcagg atagttatcg acaaaaccct gtaatttctc caaggcaata taggtgtctt
     1201 tttgatctaa agagtagcgc ggcgataatt cgtagtagct cttggctgat ttgtaagcgg
     1261 ccatttccaa tgaatcgctt ttgggataag aaacaacaaa acgctcaaat tgataaccgg
     1321 ccagatagta atcttctaga ttgtaaaacg tattggcgta gcgatacatc agtggttccg
     1381 cttgaggttt gccccggtaa attgggacaa tttgctccat taaaggaagt gcctttttgt
     1441 atttcttcgc tttgtaaagc gagtccgcca tagtgtattt tgctgccgtg tcgtctgaac
     1501 gcaacagttt ttgatactca ctgcagccag agagcaaaat actcaaaata agtacactag
     1561 caaatttcag gtccttccaa ttcatccggc aaaagtaagc aattaatgac agtattaaaa
     1621 aagaattttc gaccgttaaa ttagtgcatc aacacaaagg aacaccccat gttggtaaaa
     1681 gtttaacagg ggcaaaaatg cgatttttat cgtcgatcag aaaaggcttc tatgcgctgg
     1741 gccaaagaat catcaaccgg caccaagggc agtctgagag tattttcaca aagccctttt
     1801 ttattgagta aggccttgat tcctgacggg ttgccttgtt caaaaatcat ttcgataatg
     1861 ggcattaaat cgtaatggag ttccttagcc cttgcgctat tcccattcaa cccagcctgt
     1921 atcatctgac taaattcttc tggataggct tggccaatta cagaaatgac cccatcgccc
     1981 cccataaggg tcatgggtaa ggcaataaga tcgtctccag agatgactaa aaaaccttca
     2041 ggagcagagc gtaaaatttc catggcctga cctaaatctc ccgaagcctc cttaatccca
     2101 ataatatttt tatgggccgc tagttttaat actgttgagg gcaacatatt gcttgcggta
     2161 cgacccggaa cattatagag caatacgggc acgggactca cctgggcgac cgctgtaaaa
     2221 tgagcgatta acccaggttg cgatggtttg ttgtacatgg gagaaacgga aagtactgca
     2281 gcgatgtgct ccggattaac ctgttttaat tgatcgacta ccgcttgagt gtcattccct
     2341 ccaacaccca aaacaatggg cactctgttc gcatttacag cgaggacagc cgccaaaacg
     2401 gcctcttttt cttgttttgt cagggtgaca ctttctgccg tggtgcccaa aaccactaga
     2461 taattaattc ccttatctat ttgaaaatta acgatccgtt ttaaggcttc aaaatctata
     2521 gcgccttgga catcaaacgg tgtaattaag gcaacacctg ttccgattaa attggtcata
     2581 attttttatt taaaatactc atgtatttga caaattcact gcgcataagc gccaaacgtt
     2641 ccggagtaac agccaatgac aagtcaaaca attcttggtt caatccttga ctgcccacct
     2701 tgaatttacc cttgcttttg gctacaacta aatcgagcaa ctcattgcct ggctcgtaaa
     2761 gggcgagcaa aacatcaaac ggagtatcga taaattctat cgcccctgga ttatcgatat
     2821 gaccttgcca atcaaaatca gtgttggtta actgattttg tctcaatgtg ggtaacttct
     2881 ttttgacctc taggtatgta aaaactttta tgtcctttgg cgccatattt aaatcagcat
     2941 accaatcata aagaccatca aactcgggga ccacacgctc atcaatcaac acgcctagag
     3001 tacggcattt ggcatttaag cccgagcgat cccgatgcct gagggcttga tgtaaatcgc
     3061 gacttaacca ctttcgttta agccattctc tgaggttgtg caaaatatcc atggcttatg
     3121 gcttagaagc gatcatttta aaaaattctt cctctgaaat tatgggaatt cccaactttt
     3181 cggctttttg tcttttactc gggcccattt gatctccggc caatacataa gaagtttttc
     3241 cagaaatact gcccactatt ttacctgagt gcgccaatat catggtcttt atctcttccc
     3301 tactctgact ttggaaaacg cctgacacta caaaagacaa atcttccagc acatgagagg
     3361 ctagggcttg ctggttctca ttgtgcgatt gaaattgaca accataagcg cgaaggcgct
     3421 ctattcgact ccaattttca tcatgatcaa agtaatttct gatgctttgg gcaattttca
     3481 acccaatatc atctacagca attagttccg cttctgacgc ctggcgcaat aattctattt
     3541 cgggaaatgc ttgagccaat ttttgtgcta cagtttcacc cacatgacga atccctaagg
     3601 caaataagac tttatgatac ggctgacgga cggattcctg aactcccttg actaaatttt
     3661 gagcgctttt ttcccccatg cgctccagag gaataatctc ctccacttcg agggtaaaca
     3721 ggtcggcaaa atcttttatt aatccctgtt tgaccattaa attcaccgtt tcttctccta
     3781 agccatcaat atccatggct ttacgcgaaa taaaatgttg aattctcccg gatatctgtg
     3841 ggggacaatt ttgttcattg gggcagtaat gttgtgcttc accgtctaat cgaaccaaag
     3901 cactgccgca ttccgggcac tgatcaataa aaccaacagg cacggcatct tctcggcgca
     3961 aaccgatttt aacgtcggta atttttggta tgatttctcc tcctttttca acgacaacag
     4021 tgtctccaaa atgtaaatct aacttttcga tttgatcggc attgtgcaga gaggcacgct
     4081 tgacgaccgt ccctgccaga tctacaggct caagttcagc aaccggcgtt atcgcaccag
     4141 tccttcctac ttggtaaacc acgtgattca ataaggtcgt tgcctcttct gccttgtatt
     4201 tataggccat ggcccatctc ggggcttttg ctgtataacc cagcgcctct tgatgagaaa
     4261 gttcattgac tttaatgacg acaccatcaa tttcgtaggg cagttcatga cgatgggtgt
     4321 cccaataatc aataaattgc atcacctggt caatgttttt tgccaaacgg ggctctttgg
     4381 ggactttaaa gcccatatgn nnnnnnnnnn nntataacaa acaacttaat gggcgcttag
     4441 ccacctctgc actatcctga agtttcagac tccctgaagc ggtatttctg gggtttttaa
     4501 attcctcatc cccaagcgct cggcgctttt cgtttaaagc cgcaaaccca gatttggtca
     4561 tgataatctc accgcgaatg tcaaagcgat cattactcgg ggcacgaacc tggagcggca
     4621 cagatttaat cgttctaata ttggcggtaa cttcatcccc ttgaatgccg tcaccacggg
     4681 tcaccgcgcg caataactgt ccgtcttgat aggtcaaact gatcgaagcc ccatcatatt
     4741 tgagctcaca cataaaactc aaaggttcct gtatctgttt cttaagacgc acttcccagt
     4801 ccaacaaatc ttctttggag taactgttgt cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4921 nnnnnnnnnn nnnnnnnnnn nntggagtaa ctgttgtcca gcgagtacat gcgataatcg
     4981 tgtggaacgg ttacgaagtt tttagtcacc gctccaccca cgcgctgcgt cggtgaattt
     5041 ggatcgtaaa attgaggatt ggcttgctct aattcttgta gttgaatcaa taactgatca
     5101 aattcataat ctgaaataac aggctcatct aaaacgtaat atctgtaatt gtgctgtgtc
     5161 aattcagccc gtaatgcctt gattttatcc gctacgctca taaacacaaa tataagcaat
     5221 cattaggctc gaaaaggact tccaaatcaa ttattacatt catgttcatc agaaaaaatt
     5281 atggcttaag ccccgaaaca aaacgccatt taccccactg gtccttccac tttttgacct
     5341 gggtataccc catttcttgc atttgagcgg caaccccctg agtaaattca aaatgacatt
     5401 caaaatataa acctccgcca tgattcaagc acttaaatcc cttttgaata atctcgctat
     5461 agaattttaa cggttcatct tgcggcacaa aaagcgccaa gtgcggttcg taatccacca
     5521 cattttgatc catactgtat tgttcatttt gtggaatata gggcggattt gacacaatca
     5581 aatcaaagtg ctcttcaggc caagtttgca aaacatcttg tctttgccaa ttcacttgtt
     5641 gttcaaaatg ttcttgattt cgtttcgcca cggtcagggc ctgagtcgaa acatcccatg
     5701 cagaccaatg tgtttggggc attgaatccg ctaaactaag tgcgatgcac ccggaacctg
     5761 taccaatatc taaggccttt ctcactactt ttcctttgag gtgctcgcgt aaatacatca
     5821 ccaattcttc tgtttccggt cttgggatca aaacatcagg ggtgaccaaa aacttttgat
     5881 cacaaaacca ggtatacccc aaaatttgtt gcatcggttc aagggactga agtcgtttta
     5941 gaacagagtt cagccaatca aggtcaaggg ctgataagac ggtttctttg cgggtaatta
     6001 aatcaatagc ggaccaatta aatcgatccg taatggccct tatgagcaaa ctccgaattt
     6061 cctccttagg gtaggtgtcg ctcaaggttt gattccaata cgcctgccaa tttcccagag
     6121 tcataaaaat aaggttttta gcatccgaat tccacaggca tggtgccctg tatcccctaa
     6181 aggcccatcg atatagttaa atcccgattg ccgataaagc ttttgagcct gcgccatata
     6241 gtccatagtc tccaaataac aatgactgta gccctcggcg ctggcaaaac tcaggcacaa
     6301 atccatcatc tttcgaccat aaccctttcc gcggacactt ttatcgaaat acattttttg
     6361 gagttcacaa taactctcta aatagttctc taaaggggca atacctcctc cgccataaat
     6421 tctgtgtcca tcagtaagaa taaaatatcg actgtgcccc ttttgatagg tctcaaacat
     6481 acaattaaga gcggggtcgg cataggctgt acctactttt ggtacattga attccactaa
     6541 taccgagcga ataagttgcc cgatttcggg atcgtcatct ggttgaatca atcttattgc
     6601 taacattgag gttataaaat tttcgcagta cttttgaatg gtgaatatac acgaaaaatt
     6661 tatggcccgc tgtcttcagc tggcggaaaa tggcaaaggc acaacctatc caaatccaat
     6721 ggtgggctgc gtgatcgtta aagacgacgc catattatct gagggctggc atcaccgctc
     6781 tggcgagccc catgcggagg cccaggccat taataatata gacgtaaacg acttagcggg
     6841 tgccacatta tatgtcaacc tagagccctg taatcatgtg ggacgtacgg ccgcttgcgc
     6901 ccctttgatt gtcgcctccg gcataaaaaa agtagtgatt ggaagtcttg atacgcatca
     6961 caaggtaaat ggctcaggaa tcgagcacct aaaaaaacac ggcattgcgg tcgtgtcgga
     7021 tatattgact caggagtgcc ggaccttaaa taagcgattt ttcatgtttc atgaacagca
     7081 tcgtccctat gtgaccttaa agtgggcaga aacaaaaaat ggtctggtgg cgccgctttc
     7141 caaaaaccaa ttgcgcccag tatggatcag caatgaatac gcccgccaac atacccatgt
     7201 cctgcgcagt aaggaacatg caattttggt tggacaccga acttgggaac tcgacagccc
     7261 aaaattatcg gcctatcgat gggatgataa tgcccctcaa atcgttgttt taggcggaga
     7321 aaaacctaag aggcaagaca taatttggct cagctcagaa gaacataata ctgtggaaca
     7381 ggttttgtca aaattatatg aacttcagat acaaagtgtt cttgtggagg gaggacctga
     7441 aacccttcag cgctttattg atgccaatct ttgggatgaa tgttttgtct atagaagtca
     7501 agacacctgg cacgaagggc tagcagggcc aaaaattaag aaccccctgg cacccattga
     7561 aaggttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nattgaaagg
     7621 tttgaagaca acgttttata tcacggaaaa aaccaattat gagttccact caggacctta
     7681 aaacaattga ccgcggcgct atagatatag tctacaaaga caaaggcagt aaattcattg
     7741 gatttgccaa acatgtcgcg aacgcagaag aggcgatggc ttttttcgac cttttaagaa
     7801 atcaacatca tactgccaat cattgctgct acgcctacag gttaggtcct cagggacaag
     7861 aggtgcgcgc caatgacgac ggagaaccga cccacagtgc agggacgccg atcttaggac
     7921 aaattcaatc annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7981 nnnnnnnnnn nnnnnnnnnn nnntaggaca aattcaatca tttgacctta ccaataccgc
     8041 cgtggcggtc atccgctatt ttggcgggac aaaactgggt gttgggggcc tagtaaaggc
     8101 ctataaagca accgctcaat tgaccttggc cgcttgttct tttaagttag aagtcgttta
     8161 tcaaaaagct caattatatt ttaactatcg cgatatcggt acggccatgc attggctcaa
     8221 acaagagcaa tgcctgatca tagaacaaca tattgatcaa aaatgtcgcg ttcaatttaa
     8281 tctacccgcg caacaactta ggcacgcaca ggaattttgg aacagtcaac cagaaatcct
     8341 ttttgaaatt ttcaaggccg acggctattg attgagtgaa tccttacatt tggcaatagc
     8401 ctcgattaaa tattctggag ctggtgtaat tttcatggtg tttttatcga caaaagcgag
     8461 cgtggtttcg gcagtaatca attgcttttt gtcttcattg aaaatcacat aggaaaattg
     8521 aatttttacc cccggcattt tgaccaaagt cgtctcgatt aaaagcagat cgtcatatct
     8581 tcctggagca tgataattga tactgaattg agttacagga agtaagatgt tttgcgtttc
     8641 caactccttg tatgagaagc ctatttttct caaccaatca gtccgccctt gttctaggta
     8701 taaggcgtaa tttccgtagt aaacaaagcc catttggtcc gtttcaccgt atcttacacg
     8761 tatctcagtc gttgttttac aaagcatagt caattttgat attacgagcc tattttatat
     8821 taatcaaagc tttctaataa tgatgaaaaa aaaatcaaaa ttcaataggc tttctatttt
     8881 ttttttagat tttttgttca catatttgta gtgttaagaa aatgttagca aatcatctga
     8941 gaaaagctaa tttcattcta ttttttaact aaaaaattaa acgctttaac taattatggg
     9001 gagaactgcg gaaacagttt ggggaaactg cttgtctttt atcgaagata acatttctac
     9061 gcaagcctat aaaacctggt tcgaaccg
//
LOCUS       DPUP01000019            3906 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8472,
            whole genome shotgun sequence.
ACCESSION   DPUP01000019 DPUP01000000
VERSION     DPUP01000019.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3906)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3906)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1250
                     /locus_tag="DHV98_00730"
     CDS             <1..1250
                     /locus_tag="DHV98_00730"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04928.1"
                     /translation="RLVDNKDVGSFALSIVEDPVTDQLLFLGTDDGLYYSLDAGTQWT
                     KWKHGFPTVPVSDLLIHHREHDLVIATFGRSLWIMDDIRPLRALAQDQSTIAKPLHLF
                     EPPQGYQAAYQQPTGSRFGADALFQGQNRPSGVALSYWVNNEEVKKISKHTTDSTNGK
                     KTKDSLFLKIYQGDKLVRTLQKEIPEEHGIYHWRWYMDAKGGPWIRRNPRESKQESGG
                     GYLSPGIYEAELSMGNNDETKYQCTRQKITINPDPRIKGISTQGAEKAMAMMDKAQSL
                     SEEINGILSKIKSNKEGLERLKKDLKLQEDEDHQALLNEIKELDKALTELQDLYVGKQ
                     DERQGITAEAAPSVADRIRQHYSYLRSRPDGPTQTEIQLWQHTQEAAAEAQQKVNEFY
                     NTTWKAFTQKISEVTIPYFKPAQ"
     gene            1247..1966
                     /locus_tag="DHV98_00735"
     CDS             1247..1966
                     /locus_tag="DHV98_00735"
                     /inference="COORDINATES: protein motif:HMM:PF10677.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2490 domain-containing protein"
                     /protein_id="HCK04929.1"
                     /translation="MRKKRLIINTLNKLKSGIKCLLLLLLLTFNNTGFAQSEAEQAQG
                     SWLVFMNQHRFNTKLTALTDIQHRSWEFAQNFNQLLLRSTLYYPLNSEFGLGLGYGYI
                     ATDSSFETLEDEKNSSEHRLHGDLIFTRGFSHGAWINRYRFEQRYLSNDADGYDSSQR
                     VRYMSRINYNLTSKFSLSVFDEVFLNLQRPVFSQNRLYFGMGYQASKLLNIQLGFMKN
                     HFSNANFNRVMVTLWYNTSSI"
     gene            2064..2654
                     /locus_tag="DHV98_00740"
     CDS             2064..2654
                     /locus_tag="DHV98_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HCK04930.1"
                     /translation="MNRIYFFGLLATAMLLSCKNDVKQNAAESQNTEVKPSESKPRME
                     ANKETVVVKMESKSGSNATGVAIFVQEYGQVRLISEFEGLTPGVHAMHLHEKADCSAA
                     DGTSTGGHWNPTFEKHGSWGDPKGYHRGDIGNLTASADGKAKLMFQTDQWCIGCGDET
                     KDILGKAVIIHDGRDDLTTQPTGNAGGRVSCGGIIK"
     gene            complement(2731..>2980)
                     /locus_tag="DHV98_00745"
     CDS             complement(2731..>2980)
                     /locus_tag="DHV98_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HCK04931.1"
                     /translation="TWMAKQAYIALGNLLTVCASEGIDSCPMEGFFPEQYDEILGLSE
                     MGLRAVLLLPVGYRSPEDQFASFAKVRRGVSDVVIDLD"
     assembly_gap    2981..3154
                     /estimated_length=174
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3155..3531)
                     /locus_tag="DHV98_00750"
     CDS             complement(<3155..3531)
                     /locus_tag="DHV98_00750"
                     /inference="COORDINATES: protein motif:HMM:PF00881.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HCK04932.1"
                     /translation="MFNNMIDQLKWRYACKAFDPDGQLSETQVQTLKEAFNLTASSYG
                     LQPLKLVVISNQELKKNLVAASMNQKQIDQCSHLLVLCSKTELGDEFIHSYFKLVMEQ
                     RGTEEKILAPFRDFLLKEMGEMTP"
     assembly_gap    3646..3726
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3727..>3906)
                     /locus_tag="DHV98_00755"
     CDS             complement(<3727..>3906)
                     /locus_tag="DHV98_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015754814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCK04933.1"
                     /translation="VVLIYSVAALIVFILNDKVNFKVGLILAIGNASGAWISSRLSVK
                     KGDGFIRKFLIIMIAA"
BASE COUNT         1144 a          765 c          786 g          956 t
ORIGIN      
        1 agcgcctggt ggacaataaa gatgtcggta gttttgcctt gagtatcgtc gaagaccccg
       61 taacggatca attgcttttt ctagggaccg atgacggatt atattactca cttgatgccg
      121 gcacacaatg gacgaaatgg aaacacggtt tcccgacagt acccgtgagt gatttactga
      181 ttcatcacag agagcatgat ttggtgattg cgacctttgg aagatcactc tggataatgg
      241 atgatattcg tcccctacgt gccttagcac aagatcaaag tacaatagcc aaaccattgc
      301 atttatttga gccccctcaa ggctaccaag ccgcttatca gcagcctaca gggagtcgtt
      361 ttggtgccga tgcattgttt caaggacaga acaggccctc tggcgtggct ttgagctatt
      421 gggtaaataa tgaagaagtc aaaaaaataa gtaagcatac caccgattcg acaaatggaa
      481 agaaaaccaa agattcgctg tttttgaaaa tttatcaagg ggataaatta gtgcggaccc
      541 tgcaaaaaga aatcccagaa gagcacggta tttaccactg gcgttggtat atggatgcca
      601 aaggaggtcc ctggatccgc agaaatccca gagaatcaaa acaagaatct ggaggcggtt
      661 atctaagccc tgggatttat gaagccgagc tttcgatggg taataacgat gagacgaaat
      721 atcagtgtac taggcaaaaa atcaccataa atccagatcc cagaataaaa ggcataagta
      781 ctcaaggtgc agagaaagct atggccatga tggataaggc tcaaagtctt tcggaagaga
      841 ttaatgggat tctgtcaaag atcaaatcga ataaagaagg gctcgaacga cttaaaaagg
      901 acctaaagct tcaagaagat gaggaccatc aggctttatt gaatgaaatc aaggaacttg
      961 acaaggcgtt gactgagctt caagatttat acgtaggtaa acaagatgag cgacaaggga
     1021 taaccgccga ggccgcgccc agtgttgccg atcgaataag acaacattat agttatctgc
     1081 gcagccgacc tgatggccca acacagacag aaatacagct ttggcaacac actcaagagg
     1141 ccgctgccga ggcacaacaa aaggtaaatg agttttacaa cacaacctgg aaggccttta
     1201 ctcaaaagat ttctgaggta accattccgt attttaaacc cgctcaataa gaaaaaagcg
     1261 attaatcatt aatacattga ataaactgaa atccggcata aaatgcctac tgctattgct
     1321 tttattgaca tttaacaaca ctgggtttgc ccagtcggag gcggaacagg ctcaaggaag
     1381 ctggttagtt tttatgaatc aacaccgatt taataccaaa cttaccgccc taaccgatat
     1441 tcagcatcgt agctgggagt tcgcacaaaa cttcaaccaa ctcctattgc gttcgacttt
     1501 gtattatcca ttgaattcag aatttggatt agggttgggc tatggttata ttgccacgga
     1561 ctcaagtttt gaaacccttg aagacgaaaa gaattcaagt gaacaccgct tgcacggcga
     1621 tttgatattt actcggggtt ttagtcacgg tgcttggatc aaccggtatc gttttgaaca
     1681 acgctaccta tctaatgatg ctgatggtta cgactcatca cagcgcgtgc gctatatgtc
     1741 ccgaattaat tataacttaa cttctaagtt ttctctttcg gtgtttgatg aagtcttttt
     1801 aaatctgcag cggccagtat ttagtcaaaa ccggctctat tttgggatgg gatatcaagc
     1861 ctcgaagcta cttaatatac aattaggctt tatgaaaaat cacttttcta atgccaactt
     1921 taatcgggtt atggttacgc tttggtataa tacaagcagt atttgacaga aggacaaccc
     1981 cggttaaacg acccctgggg tggggcttta aacatttttt gagaattaaa ttttattgta
     2041 atttagaccg taaataaatc gttatgaaca gaatatattt ctttggcctt ttggctaccg
     2101 caatgctcct aagctgtaaa aatgatgtca agcaaaatgc tgctgaaagt caaaatactg
     2161 aggttaaacc gagtgaatca aagccccgta tggaggccaa caaggaaact gttgtcgtta
     2221 aaatggagtc caaaagcggg agtaatgcca ccggtgtagc gatttttgtt caagaatatg
     2281 gccaagtccg actcatcagt gaatttgaag gccttacccc aggcgtccat gcgatgcact
     2341 tacacgaaaa ggccgattgt tccgcagcag atgggacctc aacaggagga cactggaacc
     2401 caacttttga aaaacacggt tcttggggag atcccaaggg ctatcatcgc ggtgacattg
     2461 gtaacctgac cgcttcagca gacggaaaag caaaactcat gtttcaaact gatcaatggt
     2521 gtatcggctg tggtgatgaa accaaagaca tactaggtaa ggcggtaatc atccatgatg
     2581 gccgagatga cctaacgact caacctactg gaaatgctgg aggtcgtgtc agctgtggcg
     2641 ggattattaa gtaaggctca ttttactgag cccatgattt aggataatct taaatatggg
     2701 cttttgctta taaaatacgc tggccgaaaa ctaatccagg tcaatgacca cgtcagaaac
     2761 cccgcgacgc actttggcaa atgaggcgaa ttgatcctca ggactgcgat agcctacagg
     2821 taacaataac accgccctca gccccatttc tgaaagacca agaatttcgt catattgctc
     2881 tggaaaaaat ccttccatcg ggcatgaatc aattccttct gaggcgcaaa ccgtcaatag
     2941 atttcctaag gcaatatagg cttgcttcgc catccaggtt nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnggagtc atctccccca tttctttcag
     3181 gagaaaatcg cgaaatggag cgagtatttt ttcctcagta ccacgctgct ccataacgag
     3241 tttaaaataa gaatgaataa actcatctcc tagctcagtt ttcgaacaca agaccaacaa
     3301 atgcgagcat tgatcaatct gcttttgatt cattgaggcg gcaacaagat tttttttgag
     3361 ctcttgattg ctaatcacca ctagtttgag cggctgcaaa ccgtaggatg aagccgttag
     3421 attgaacgct tctttaaggg tttgtacctg agtctcactt aattgaccat ccggatcaaa
     3481 agccttacag gcgtatcgcc acttgagttg gtcaatcata ttattgaaca tagatgtttt
     3541 tttgcaaagg taatattttg aacgattgaa ccatttggat tttaaggctc aatgcgtcct
     3601 taattcaacc cattatattt gaaaaaacca aagtttgata gccaannnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnngcag cgatcataat aattaaaaac tttcgaataa atccatctcc ttttttaacc
     3781 gaaagtctac tcgaaatcca tgcgccggag gcattcccaa tggccaaaat taagccaact
     3841 ttaaaattta ctttatcgtt taggataaag acaattaagg cagccacaga ataaatcagg
     3901 actaca
//
LOCUS       DPUP01000020            3454 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_22214,
            whole genome shotgun sequence.
ACCESSION   DPUP01000020 DPUP01000000
VERSION     DPUP01000020.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3454)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3454)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3454
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..477)
                     /locus_tag="DHV98_00760"
     CDS             complement(<1..477)
                     /locus_tag="DHV98_00760"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04934.1"
                     /translation="MRVKLQTMRSILLWIPLVFSAAALSQNGASDALAMCKDLSPANR
                     AMAKSAGYDVDAICSGLSKTNAVVAPDNKPEVIAPRSVTVQEKMADQVVPTAVVGVTA
                     PKPASSLKRFGYELFAGTPNTFAPVTNVPVSPDYLLGPGDMLQVMFYGKTNTSFSLE"
     gene            480..680
                     /locus_tag="DHV98_00765"
     CDS             480..680
                     /locus_tag="DHV98_00765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04935.1"
                     /translation="MLSIVKSIRLSGGTQLLFLTTAADPRHMLLSWQYKVIRPALLGG
                     VFIIRTVGFDKSKNLLDSSPRT"
     gene            complement(677..1753)
                     /locus_tag="DHV98_00770"
     CDS             complement(677..1753)
                     /locus_tag="DHV98_00770"
                     /inference="COORDINATES: protein motif:HMM:PF00953.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04936.1"
                     /translation="MLVLSAALLGGEGICAILFFHWISGLRLGVDEKNKHGLNVSASS
                     RLGGLAVFMVAIVLIVWGALIDPQRMAADISRTGTYHLGFISLIVCALMGLSEDLRNN
                     FLTPRVRLISKFAVIAALAFYWPQIIPTSIGVYGVDFLLQSPLIGLILVTIFLVGFIN
                     AINMADGANGLVPGVVVCATLIFSLQTNRMVDESIFLAFAAFLLFNVISGRLFLGDMG
                     TYGAGCMLGLYGLIFFNEGVFSLSFLAALFAYPCLDFLVSISRRLAAGESAFLPDNNH
                     LHNRLYFHVAKRLGDGVHANSVTGLLIASCTSGVVLLGYLQNWWPVTSNSWIVIFIGE
                     ILAYALVLYLCDRAQVVSQHSKTV"
     assembly_gap    2104..2195
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2378..3325)
                     /locus_tag="DHV98_00775"
     CDS             complement(2378..3325)
                     /locus_tag="DHV98_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007232653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HCK04937.1"
                     /translation="MQNDLASPLVEDEIDLKEIAVALWRGKTIIIAIVSVCSILAVTV
                     ALLIPNQYKATAVVAPAQSSSSSALGAMASRLGGLATLAGINVGSGDNVTEAQTAIEI
                     MQSWQFIETFVQSHNLQAAIFAADGWDSQTNQITFNSDIYDSERDEWIRKPPSGKTAQ
                     PTSWELYQEFSNRLSVSTEKTSGLITISIEYYSPILAQQWVELYISSINAYMRERKLT
                     QVNNSIDYLKAQITKTAFADMKEVFYQIIEEQIKSKMLAEASPEYAFVTVNSAMVPEE
                     KSSPKRALICLLVTFLGFMLAVFIVLIRHYATSTNVDIK"
BASE COUNT          998 a          835 c          718 g          811 t
ORIGIN      
        1 ctccagcgag aacgatgtat tggttttacc gtaaaacatg acctgaagca tatcgcccgg
       61 ccccaacaga taatcgggcg aaaccgggac attggttacc ggcgcaaagg tgttgggtgt
      121 tccggcaaat aactcataac caaaccgctt aaggctactt gcaggttttg gcgcagtcac
      181 gccaacgacc gcagtgggaa caacttgatc agccattttc tcttgcacag tcaccgagcg
      241 aggagctatg acctccggtt tattgtcggg tgcaactacg gcatttgttt ttgacaggcc
      301 agaacagatc gcgtcaacat catagcccgc gctcttagcc attgctctgt tggcgggaga
      361 gagatcctta cacattgcta gtgcatcgct tgcgccattt tggctcagag cggcagccga
      421 aaaaaccagt ggaatccata acaggattga acgcattgtc tgtaacttaa ctcgcatggg
      481 tgctctctat tgtcaaatca attagattga gtgggggtac gcaactttta tttttaacca
      541 cggcggcaga tccccgccac atgcttctaa gctggcagta taaggtgatt agacctgcac
      601 ttctaggagg agtttttata atcaggacgg ttgggtttga taaaagcaaa aaccttttag
      661 actcttcccc gcgaacctaa accgttttcg agtgctggga aaccacctga gcacgatcac
      721 agagatacaa taccaacgca taagcaagga tctcgccaat gaaaatgaca atccaactgt
      781 tgcttgtcac tggccaccaa ttctgcaaat agcctagcaa tacaacgccg ctggtgcacg
      841 aagctattaa tagtcccgtc acagaatttg catgaacacc atcgccgagc cttttagcca
      901 cgtgaaaata caagcgatta tgcaagtgat tattgtcagg caagaaggcc gactcccccg
      961 ccgccaagcg tcttgagatg ctaactaaaa agtcaagaca agggtaagca aacagagcgg
     1021 caagaaaaga cagggaaaat acaccctcgt tgaagaagat taacccgtac agccccaaca
     1081 tacagcctgc cccataggtg cccatatcgc ccaagaacaa acggccagaa atcacattga
     1141 acaacagaaa agctgcaaac gccaaaaata tactctcatc aaccattctg ttcgtctgta
     1201 gcgaaaatat tagtgtggca cacacaacaa cacccggcac caagccattt gcgccatcag
     1261 ccatgttaat ggcatttata aagcccacca aaaatatggt caccaatatc aagccaataa
     1321 gcgggctctg caaaaggaag tcaaccccat aaacgcctat cgatgttgga ataatctgag
     1381 gccaatagaa ggccagagca gcaatcaccg caaacttaga tatcaaacga acgcggggag
     1441 tcaaaaaatt attacgcaaa tcctcactta agcccataag tgcacagaca atcaaactta
     1501 tgaacccaag gtgataagta cctgtccggc taatatccgc tgccattctc tgaggatcaa
     1561 ttaaggctcc ccacacaatt aaaactatag ccaccataaa aacagctaag ccacccaatc
     1621 gagacgacgc tgaaacgttc aagccatgct tatttttttc atcaacacca agacgtaacc
     1681 cggatatcca gtggaaaaac aatattgcac aaataccttc gccacccaaa agagcagcag
     1741 acaaaacaag catcaccagt agttccgcta gctgccttgg ccgttcgact aaacgcacac
     1801 tcacaccccg cgttaaataa atgctgattg ttattattgt gaatagacat aagaatacac
     1861 tgacatacaa gagtattgga atacaagatc aatttctacg gcgaatcaag ctaaactagt
     1921 tagtccgagc ctttgcctat gctttaacgg cagccccatc aagcaaatac cgcggagtaa
     1981 tcgagcatac acaactcgat gatcaagacc tcatcaataa gcagtacccc gcatagttag
     2041 taaaaactaa tacgggggcg cttaaaaaca tatgaagtaa atcgagaaag gctcgggcga
     2101 caannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnctcag tgcctaagag ttacgccttg
     2221 gagccccaga gatgggcacc tgcacacaac aacttaacta gccctcactg aacaagctca
     2281 aatattgcct ctgaacaata ctccaagtgt atcggcgctg cgcagtgcat catctttacc
     2341 gattatggat tagaaaaata actacggcga catggcccta tttgatatcg acatttgtag
     2401 aggttgcgta atgcctgatc aatacgataa agactgcaag cataaacccg aggaaggtca
     2461 ctaataagca aattaaggcg cgctttggag atgacttctc ctcaggcacc atggcagagt
     2521 ttactgtaac aaaggcatat tctgggcttg cttctgccag cattttactt tttatctgct
     2581 cttcaataat ttgataaaaa acttctttca tatcggcaaa ggccgttttg gttatttgag
     2641 ccttcagata gtcaatactg ttgttcacct gcgtgagttt acgttccctc atataggcgt
     2701 ttatggatga tatgtatagt tccacccact gctgagcaag aatcggagaa taatactcaa
     2761 tcgaaattgt aattagtccg ctggtctttt ctgtggagac acttaatcgg ttagagaatt
     2821 cttgatagag ctcccaacta gtgggctggg ctgttttacc cgatggaggt ttgcgaatcc
     2881 actcgtcgcg ctcgctgtcg tagatatcac tgttgaaggt gatctggttg gtttggctat
     2941 cccacccatc ggcagcaaaa atagcggcct gaagattatg gctttgcaca aaggtttcaa
     3001 taaattgcca cgactgcata atttcgatgg ctgtttgtgc ttcggttacg ttgtcaccgg
     3061 agccgacatt gataccagcc aaagtcgcga gcccaccaag acgagacgcc atagcgccca
     3121 aggctgacga actgctgctc tgcgcaggtg ccactacggc tgtggctttg tactgattcg
     3181 gtatcagaag tgcaacagtt accgcaagga tcgagcagac acttacgata gcgataatta
     3241 tcgtcttgcc gcgccaaagg gcaacggcta tttctttgag gtctatttca tcttcgacta
     3301 acggcgatgc aagatcattt tgcatggtaa agttcctttt tgtttgtctt ggctgtcctg
     3361 gctgtgcgcc agttagctat tgcgtctcta taactttgct cacagttttt acaataccca
     3421 tctcaaaggt ctctcgtggc cgccagtcaa tttc
//
LOCUS       DPUP01000021           15172 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15808,
            whole genome shotgun sequence.
ACCESSION   DPUP01000021 DPUP01000000
VERSION     DPUP01000021.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15172)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15172)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15172
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..334)
                     /locus_tag="DHV98_00780"
     CDS             complement(<1..334)
                     /locus_tag="DHV98_00780"
                     /inference="COORDINATES: protein motif:HMM:PF14093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04938.1"
                     /translation="MNCMEHLLRVELNRDWLTLMLIGALALLGVLRYWFPKRMSELLL
                     LPVNDKYFALEGRQKALIHPFNISMLVIQLVTFGILFSGLKGMGHSPHHSLQFNEFTT
                     GVFFISLYL"
     gene            430..1161
                     /locus_tag="DHV98_00785"
     CDS             430..1161
                     /locus_tag="DHV98_00785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dolichyl-phosphate beta-D-mannosyltransferase"
                     /protein_id="HCK04939.1"
                     /translation="MAEGLIIIPTFNESENIEKLLRNVFSLQRIFSVLVVDDGSPDGT
                     AEIVERLIPEYPKHLNLLKRSEKSGLGRAYIAAFEWALKRDYSFIFEMDADFSHNPND
                     LIRLYNCCAREGYDMAIGSRYITGVNVVNWPMSRVLLSWGASKYVQWVTGMNIKDTTA
                     GFVCYRREVLEGLDLSCIRFVGYAFQIEMKYKAFLKGFKIKEIPVIFTDRTRGTSKMS
                     KGIISEAIFGVLNMRFKQLLNRLAI"
     gene            1158..>2142
                     /locus_tag="DHV98_00790"
     CDS             1158..>2142
                     /locus_tag="DHV98_00790"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270255.1"
                     /note="Catalyzes the reversible hydrolysis of the amide
                     bond within dihydroorotate. This metabolic intermediate is
                     required for the biosynthesis of pyrimidine nucleotides;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCK04940.1"
                     /translation="MNQSVLIKNAQVVNEGSIDTCDVLVVGDRIQEIASTISAKSPNT
                     RVIDADGLYLMPGMIDDQVHFREPGLTHKATIESESKAAVAGGITSFIEMPNTVPQAT
                     TMDKVEEKFAIAAQSSWANYSFMLGGTNDNLEDLIKADPAKVAGIKLFLGSSTGNMLV
                     DDPEVLAAIFKNTKMVISVHCEDEATIRENLEAQIAKYGEDIPMAMHPVIRSEEACYL
                     SSSRAIELAKKHGARLHVFHLSTAKETGLFKAQSDLTKKRITSEVCIHHLWFSDEDYP
                     RLGSKIKWNPAVKTAADRSGLRKALLDDRIDVIATDHAPHTSEEKSNKYTSA"
     assembly_gap    2143..2258
                     /estimated_length=116
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2259..2570
                     /locus_tag="DHV98_00795"
     CDS             <2259..2570
                     /locus_tag="DHV98_00795"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782308.1"
                     /note="Catalyzes the reversible hydrolysis of the amide
                     bond within dihydroorotate. This metabolic intermediate is
                     required for the biosynthesis of pyrimidine nucleotides;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCK04941.1"
                     /translation="LYHQGVISLEKIVEKFAHNPAKLFDIKDRGYIRPGYKADLVLVD
                     LHAPWTVNKSNILYKCGWSPFEGNVFQARVMYTLVNGQLVYTDGSFPQRTYGERLLFN
                     R"
     assembly_gap    2695..2777
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2778..3206
                     /locus_tag="DHV98_00800"
     CDS             <2778..3206
                     /locus_tag="DHV98_00800"
                     /inference="COORDINATES: protein motif:HMM:PF14129.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04942.1"
                     /translation="LSIFLALSLFACQDVVRPAIPEQIIPEAKMADLLVEAYIGNAAR
                     SNNNRVLRMGGVQLDSILYAKYEIDSLQFAQNTAYYAAQIDPYMRILQQVETKLSVVK
                     KSLDSLALIDAEQQKKDKESFLDSAKTNVLNQKIIPAISQ"
     assembly_gap    3278..3377
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3378..4317)
                     /locus_tag="DHV98_00805"
     CDS             complement(<3378..4317)
                     /locus_tag="DHV98_00805"
                     /inference="COORDINATES: protein motif:HMM:PF01370.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HCK04943.1"
                     /translation="MILVTGGSGFLGAHLLAELTQKHERIRALYRDQKGIEKAREVFR
                     YSFKQEAPLFDKIDWIQGDLNDPIGLAEALNGITEVYHVAGLINFEWRRYPELKKTNT
                     VGTANLVNCCLETKVKKLCYISSIAALGQNTNTQEQDPFDPPSFKDPYALTKYGGELE
                     VWRGAQEGLQVIILRPGVILGEGYWRSGSGFLLKFVSTEPTWYPPGGTGFVDVKDVVA
                     FAVALMEGAVHNQAFTLVGYNLTYLEVLQKIGHALGSKKVPKRKIPLWVGLIGHYLDF
                     LRAWITSSAQRLPKAYIHAMFEPSTYDGTPVTKLVPL"
     gene            4418..5713
                     /locus_tag="DHV98_00810"
     CDS             4418..5713
                     /locus_tag="DHV98_00810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HCK04944.1"
                     /translation="MPKNFIQELQWRGMIHDVMPDTEQHLNEAMRSAYVGFDPTADSL
                     HIGNLVPIMLLAHLQRCGHRPVALVGGATGMIGDPSGKSSERQLLDEATLRHNQDCVK
                     AQLSHFLDFDSGAPNQGLLVNNYDWMKSFSFLDFIRDVGKHITVNYMMAKDSVKNRIK
                     GEEGDGMSFTEFTYQLVQGYDFLHLYKAHDCTLQMGGSDQWGNITTGTELIRRIGQSK
                     GYALTCPLITKSDGSKFGKSEGGNIWLDPNRTSAYKFYQYWLNTSDDDAERYIKIFTF
                     LDRETINSLILEHQQAPHLRTLQKRLAQEVTQTVHGQAQYQNALLASEILFGKATDQE
                     LKRLDRKTFLEVFDGVPQAEVSRDAIDSGLDIVAALVEKSGFLKSNGEARRALEQQSI
                     YINKTKVDLGYVIQSKDLIDHQFVLLQRGKKNYCILKVS"
     gene            complement(5746..6261)
                     /locus_tag="DHV98_00815"
     CDS             complement(5746..6261)
                     /locus_tag="DHV98_00815"
                     /inference="COORDINATES: protein motif:HMM:PF03994.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04945.1"
                     /translation="MNAPLFYLALFEIVFSLLISVGVIYVSYGILRRVFFKQNDLSGK
                     DMAFTVLTSGLVLSIGLILSEILPQITQVVRVATTQGSSPDYQTIVLYAALYLTVGFF
                     IALMINTAVFGLFSMLTQGIHEYKEIRNNNLAVALIVAVTIISITLIVKESIAVLISA
                     LLPYPQATNFL"
     gene            complement(6287..7120)
                     /locus_tag="DHV98_00820"
     CDS             complement(6287..7120)
                     /locus_tag="DHV98_00820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04946.1"
                     /translation="MILLIGTIILRGLIELVHNNVSLESSDNIPSDTELIWLEKDQDS
                     ILVYRHGRSWQNNYGTPYQTKLTVRYDDVTQAIQSHRGINPEGLTSFWGALYAQMAQE
                     SGPKLDLILDAFYQIYLQEPMSAELFAEMVVSCIQNIPYALVFQEACQEPENYQGWIE
                     ELLSECPDCCIGDQPFGLQSPLAFMQNLKGDCDTRTVFLFSVLSAFNYDVAILNSDVY
                     RHSIIGLNLPSAGLYKLFQGKKYLVWETTAPNHLMGSLPPQIGNMNFWNVVLTHSPEL
                     N"
     gene            complement(7159..8162)
                     /locus_tag="DHV98_00825"
                     /pseudo
     CDS             complement(7159..8162)
                     /locus_tag="DHV98_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753662.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl transferase"
     gene            complement(8221..9156)
                     /locus_tag="DHV98_00830"
     CDS             complement(8221..9156)
                     /locus_tag="DHV98_00830"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04947.1"
                     /translation="MKLHVLSGLCLIMTQTGQAQELFLANFEQQSVYNSLYYDLDDPN
                     SPHSLVNNPDEPLLNFSGQGNNLGYSAFYVPYDDPSTGLSDGDHVGITDDTGITGAWS
                     EGNQGYVLSDIDGNFILNFSEIQLNQSAETTVSCSLFIRESTYEGDGTQNASNSDRIA
                     IYVVDPSNGSKIDLINTEGHDIDDLDIEGRWLRLTAQITGFERAKLVVEARNNASNEA
                     FYIDDIRFEGQLNITDIKNKQSAVVPNPIDQNFSLIRRPSALKEIYIQNIFGRIVWRG
                     DIHQNSWSVPHLNSGLYFLNIADRDLTWTQKIIKK"
     gene            9440..10123
                     /locus_tag="DHV98_00835"
     CDS             9440..10123
                     /locus_tag="DHV98_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HCK04948.1"
                     /translation="MKKKDITILLVDDEPDILEIVGYNLTQEGYVVVTAENGLRALDQ
                     AKKHKPQLIILDVMMPEMDGIEACEKLRAMPELAESVITFLTARGEDYSQLAGFEAGA
                     DDYITKPVKPKVLVSKVKALLRRFKEVQEAPQNLKLGNLIINREEYKIIKDKKEMVLP
                     RKEFELLALLASKPGKVFKREEILDIVWGNEVIVGGRTIDVHIRKLREKIGDDRFKTV
                     KGVGYKFVE"
     gene            10123..10707
                     /locus_tag="DHV98_00840"
                     /pseudo
     CDS             10123..10707
                     /locus_tag="DHV98_00840"
                     /inference="COORDINATES: protein motif:HMM:PF00512.23"
                     /note="incomplete; partial in the middle of a contig;
                     missing stop; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
     gene            complement(11034..12258)
                     /locus_tag="DHV98_00845"
                     /pseudo
     CDS             complement(11034..12258)
                     /locus_tag="DHV98_00845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032310.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
     gene            12330..13010
                     /locus_tag="DHV98_00850"
     CDS             12330..13010
                     /locus_tag="DHV98_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012023416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HCK04949.1"
                     /translation="MGSKNKLKRFKENETFANVIQPKRDALLADTFALKGHWCASFFK
                     NDRPIVLELGCGKGEYTLALAKRDPNKNYIGIDIKGARFWKGAKTALADELTNVGFLR
                     IQIELLTYCFAQGEIDEIWITFPDPQIKYKRTKHRLTNREFLKSYQKVLRPGGLVHLK
                     TDSEFMHGYTLGLLHGLGQDIHFAQHDVYGTTGTPEVVTAVQTFYESQYLTEEKKITY
                     TSFSLRGL"
     gene            13053..>13269
                     /locus_tag="DHV98_00855"
     CDS             13053..>13269
                     /locus_tag="DHV98_00855"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine transporter LysE"
                     /protein_id="HCK04950.1"
                     /translation="MTALVNFFVGYLASLIGLIPPGLLNMTAAKIGVKQGRKPALIFS
                     VGVIVVVCVQTGLGLAFARYIEQHPEIV"
     assembly_gap    13270..13373
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <13374..13804
                     /locus_tag="DHV98_00860"
     CDS             <13374..13804
                     /locus_tag="DHV98_00860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="lysine transporter LysE"
                     /protein_id="HCK04951.1"
                     /translation="QHPEIVDILQKVTLGIFLALTFYFFVLAKDTRREIPKGVKRSKT
                     NRFLYGILLSSLNMLPIPYWVYVSISLSALGWFFFDPQVIGWAIFGSATGTFSMLLIY
                     IYFFQRKLPIGNFGFNLNYFLGAITGLISLITVIRIWQRM"
     gene            13789..14133
                     /locus_tag="DHV98_00865"
     CDS             13789..14133
                     /locus_tag="DHV98_00865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018472844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine methyltransferase"
                     /protein_id="HCK04952.1"
                     /translation="MATHVTLDKSDFFERVYKVVRDIPYGRVTTYGAIAKSIGAPGAA
                     RTVGYAMNASHNLPDVPAHRVVNRDGMLTGKHHFPGRDTMQRLLAQEGVMVQDDCVVN
                     FKALFWQPDSLI"
     gene            14241..15172
                     /locus_tag="DHV98_00870"
                     /pseudo
     CDS             14241..15172
                     /locus_tag="DHV98_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989404.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    14661..14742
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         4176 a         2991 c         3340 g         4178 t
ORIGIN      
        1 tcaaatacag gctgataaaa aaaactccag tagtgaactc attaaattgg aggctgtggt
       61 gtggtgaatg acccataccc ttcagccctg aaaacaaaat cccaaaagtc acgagctgaa
      121 tcacgagcat tgaaatattg aacggatgta ttaaggcttt ttgacggccc tctaaggcaa
      181 aatacttgtc gtttacaggc aataacaata attcactcat gcgctttggg aaccaatacc
      241 gtaaaacacc caggagggcc agggcgccaa tcagcataag ggttaaccaa tcacggttta
      301 attctacgcg gagtaagtgt tccatacaat tcataaaatt acgctaattt tttagttttt
      361 taagccctca aaagggcttt gacaaggcgg gagtaatgaa aaaaaagtac ctttgagcaa
      421 agttttgaaa tggccgaagg tctcattatc attcctactt ttaacgaatc tgaaaacatt
      481 gaaaagcttc tgcgcaatgt gttttcgttg caacgtatat tttctgtact tgtagtcgat
      541 gatgggtctc cagacggaac cgctgaaatc gtcgagcgat taattcccga atacccaaaa
      601 cacctaaatt tgcttaaacg ctcagagaaa tctggtttag gtcgtgcgta cattgctgct
      661 tttgaatggg ccctcaaacg agattactct tttatttttg aaatggatgc ggatttttca
      721 cacaatccta atgatttaat tcgtctttac aattgctgtg cccgcgaggg ttatgatatg
      781 gccattggct cgcgttatat caccggggtt aatgtggtga attggccaat gagtcgggtt
      841 ctgttgtcat ggggggcttc caaatacgtt caatgggtta ccggcatgaa catcaaagac
      901 accactgcgg gctttgtttg ttatcgcaga gaggtgcttg agggactgga tttatcttgt
      961 attcgatttg tgggttatgc ttttcaaatt gaaatgaaat acaaggcatt tttaaaggga
     1021 ttcaagatca aagaaatccc cgttattttt acggacagaa cgcgcgggac ttcgaaaatg
     1081 tctaaaggaa ttatttcaga ggctattttt ggtgttctga atatgcgttt taaacaatta
     1141 ttaaaccgat tagcgatatg aatcaatcag tattgattaa gaatgcacag gtggtgaatg
     1201 aagggagtat tgatacttgt gacgtattgg ttgtgggtga tcgcatccaa gagattgcct
     1261 cgaccattag cgccaaatca ccaaacacaa gagttatcga cgccgatggg ctctatctta
     1321 tgccggggat gattgatgat caagttcatt ttagagaacc tggattgacc cacaaggcca
     1381 ccatagaatc tgaatctaag gcggctgtag ctggcgggat cacaagtttt atagaaatgc
     1441 caaatacggt gcctcaggcc acgaccatgg ataaagttga ggagaagttt gctattgctg
     1501 cacagagctc ctgggcgaac tattcattta tgcttggtgg gaccaatgat aatctagaag
     1561 acctcattaa ggccgaccca gctaaggtgg caggaataaa actcttcctg ggatcttcca
     1621 caggcaatat gctcgttgat gatccagagg ttttggcagc gatctttaag aatacaaaaa
     1681 tggttatttc ggtgcattgt gaagatgagg cgaccattcg ggaaaacctg gaggcacaaa
     1741 tcgctaaata cggagaagat attcctatgg cgatgcaccc ggttattcga tcagaagagg
     1801 cgtgctacct ttcgagctca cgagcgatag aactcgccaa aaaacatggg gctcgtctac
     1861 acgtgtttca cttatctaca gcaaaagaaa ccggattgtt taaagcgcaa tccgacctga
     1921 ccaaaaaaag aatcacttcg gaggtttgta tccaccacct ttggttcagt gatgaagatt
     1981 atccgcgcct aggctcaaag attaaatgga atcctgcagt aaagaccgcg gcagatcgtt
     2041 cgggcttgcg caaggcctta ttagacgacc gtattgacgt tattgctacg gaccacgcgc
     2101 cgcacaccag cgaggaaaaa tcaaataaat acaccagtgc tcnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnct ctatcatcaa ggggtaattt
     2281 ctttggaaaa aatagttgaa aaatttgcgc ataaccccgc aaaacttttt gacatcaaag
     2341 acagagggta tattcgtcca ggttacaaag cagatttagt attggttgat ctgcatgcgc
     2401 cttggacggt aaataagtcc aatatattat acaaatgtgg ttggtcgcct tttgaaggca
     2461 atgtttttca agctcgggta atgtatacct tggtcaatgg tcaactggtc tatactgatg
     2521 gttcatttcc tcaaagaact tatggggagc gcctgttgtt taatcgataa aaaataaaga
     2581 tgacaagcac gaaaaagcga atccgaagta aaaatttgtt ttggtccgcc cttatggaat
     2641 ggccaaataa acacctcttt gtttcgttaa aatttgcgct ttcgattttt cttgnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnctt tcgatttttc ttgccctaag tctttttgct tgtcaggatg
     2821 tggttcggcc cgctattccc gagcaaatta ttcctgaggc taaaatggcc gatttactcg
     2881 tggaggccta tataggcaat gctgcgcgaa gtaataacaa tcgcgttttg agaatggggg
     2941 gtgttcaact ggattcaatt ctgtatgcaa aatatgaaat agacagcctt caatttgccc
     3001 aaaataccgc ttactatgcg gctcagattg atccatatat gcgcatcctt cagcaggtgg
     3061 agacaaaact ttcagtagtt aaaaaatctt tagattctct cgccttaatt gatgccgagc
     3121 agcaaaaaaa ggataaagag tcttttctgg attcggccaa gactaatgtg ctcaatcaaa
     3181 aaattattcc tgccataagc cagtaaagcg gcattaattt attttgtacg gcgctaattg
     3241 accgatccta ttgagggtct tatctatttc tgtgtagnnn nnnnnnnnnn nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnnnnnncca gagggacaag ctttgtaacc ggtgtcccgt cgtaagtgga
     3421 gggctcaaac atagcatgta tataggcttt ggggagcctt tgcgcgctgc tcgtaatcca
     3481 cgcacgcaag aaatctaaat aatgtccgat aagtcccacc cagaggggaa tctttcgttt
     3541 aggtactttt tttgagccta gggcatggcc tattttttgg agcacctcga gataagtcaa
     3601 attatatccg accagtgtaa aggcttgatt gtgtactgcg ccctccatta gggccactgc
     3661 gaaagccaca acatctttga catccacaaa acctgttcct cctgggggat accatgtggg
     3721 ttctgtgctt acgaacttca aaagaaaccc actgccactg cgccaatacc cctcgcctaa
     3781 aattactccg ggacgtaaaa taatgacttg aagcccttct tgagcgcctc tccaaacttc
     3841 caattctccg ccatacttgg tcaaggcata agggtctttg aatgaagggg ggtcaaatgg
     3901 gtcctgctct tgggtatttg tgttttgtcc caaggcagca atggagctga tataacagag
     3961 ctttttgact tttgtctcca agcaacaatt aaccaagttt gctgtcccta cagtattggt
     4021 ctttttgagc tcgggataac gccgccattc aaaattaatg agtcctgcta catgataaac
     4081 ttcggtaatt ccattgaggg cttcagcaag accgatgggg tcgtttaaat caccctgaat
     4141 ccaatcgatt ttatcaaata agggggcttc ttgcttgaag gaataccgga atacttcacg
     4201 cgccttttct attccttttt ggtctctgta aagcgcgcgt atgcgctcat gtttttgcgt
     4261 taactcagcc agtagatgag cgcctaaaaa tcctgaacca cccgtaacca atatcatagc
     4321 tctaaggtac agttttcatt gatatcggtg gaaataatcg cgggtgaact ttagtttttt
     4381 caattaggcc attatctttg tccaaaacca gaaaaccatg ccgaaaaact ttattcagga
     4441 actgcagtgg cgaggaatga tccatgatgt aatgcccgat actgaacagc atttaaatga
     4501 ggcaatgcgt tctgcttatg ttggctttga tcccacggct gattcgcttc atattgggaa
     4561 tttagtgcca attatgctat tagcacactt acagcgctgt ggccatagac ctgtggcttt
     4621 agtcggcggg gccacgggaa tgattggaga tccctccggt aaatcaagcg aacgacaact
     4681 tcttgatgaa gcaacacttc gccacaatca agactgcgtt aaggcacaac tttctcattt
     4741 tttggatttt gacagtgggg cgccgaacca agggcttttg gtcaataatt atgactggat
     4801 gaagtctttt agtttcttgg attttatccg tgatgtgggc aagcatatta cggtcaatta
     4861 tatgatggcc aaagattctg taaagaacag aattaaagga gaagagggcg atggtatgtc
     4921 ctttacagag ttcacttatc agttagtcca agggtacgat tttctccacc tctataaggc
     4981 tcatgattgc accttgcaaa tgggtggaag tgaccaatgg gggaatatca ccactgggac
     5041 tgaactaatt cgtcgtattg ggcaatcaaa gggttatgcc ttgacctgtc ccttgattac
     5101 aaaaagtgat ggcagcaaat tcggcaaaag tgaagggggt aatatttggc tcgacccaaa
     5161 tagaacctcg gcatataagt tttaccaata ttggttaaac accagtgatg acgacgctga
     5221 gcgttatatt aaaatcttta ccttcctaga ccgcgagacc ataaactcat tgattcttga
     5281 gcatcagcag gccccgcatt taagaaccct ccaaaaacga ctggcccaag aagtcacgca
     5341 gacggtacac ggccaagcac aataccaaaa tgccctatta gcctcagaaa ttttatttgg
     5401 aaaggcaacc gatcaagaat taaaacgatt ggatcgcaag acctttttag aggtttttga
     5461 tggggtccct caagccgagg tttcccgcga cgcgatcgat tcaggactgg acattgtggc
     5521 tgctttggtc gaaaaatctg ggtttttaaa atccaacggt gaagcgcgac gcgctttgga
     5581 gcagcagagc atttatatca ataaaaccaa agttgatttg ggctacgtta ttcagtctaa
     5641 agatttgatt gatcatcagt tcgttttgtt gcaacggggt aaaaagaatt actgtattct
     5701 caaagtttca taacaagccc atcacgaatt tgctgaggtc tgtggctaca aaaagtttgt
     5761 cgcttgtgga tagggcaaaa gcgcactaat cagtaccgct atgctctctt tgacaattag
     5821 cgtgatactg ataatggtca ccgccacaat tagggcgaca gccaggttgt tgtttcttat
     5881 ttctttgtac tcatgaatgc cttgggtcaa catcgagaat aaaccaaata cggccgtatt
     5941 gatcataagg gcaataaaaa atcctacagt cagataaagg gccgcataaa ggacgatagt
     6001 ttgatagtcc ggactgctgc cttgagtggt ggctacacgc acgacttggg tgatttgcgg
     6061 caatatttcg cttagaatta aaccaatgct tagcaccaaa ccagaggtca atacggtaaa
     6121 ggccatgtcc ttgccgctga ggtcattttg cttgaaaaac acgcgtctta aaatcccata
     6181 tgagacatag attaccccaa cgctaattaa tagggaaaag actatttcaa ataatgctaa
     6241 gtaaaaaagt ggcgcgttca tgggctaaag ttaagggttt tgcttattaa ttgagttctg
     6301 gtgaatgggt caatacgaca ttccaaaaat tcatattacc gatttgagga ggcaaggaac
     6361 ccatcaggtg attgggtgcg gtggtctccc atactaaata tttttttcct tgaaagagtt
     6421 tatacagccc agccgagggc aaattcaaac ctataattga atgccgataa acgtcgctgt
     6481 taagaatggc gacatcgtaa ttaaacgcac tcaggacact aaataaaaaa acggtgcgtg
     6541 tatcgcaatc acccttgaga ttttgcatga atgccagcgg gctttgcagt ccaaagggtt
     6601 ggtctccgat acagcaatca gggcattcgc taagtaattc ctcaatccat ccttgataat
     6661 tttcgggttc ttgacaggcc tcctgaaaga ctaaagcata gggtatgttt tgaatacagc
     6721 ttaccaccat ttctgcaaac aattctgccg acatcggttc ctggaggtat atttgataaa
     6781 aggcatccaa aatcaagtcc aattttgggc cgctttcttg ggccatctga gcataaagcg
     6841 ctccccagaa acttgttaag ccttctggat ttattcctct gtgggattga atcgcttgag
     6901 taacgtcgtc gtatcgaacg gtaagtttgg tttgatatgg ggtgccgtaa ttgttttgcc
     6961 aagaacggcc atgtcgatag accaaaatac tgtcctggtc cttttccagc caaatcagtt
     7021 ctgtatccga aggaatattg tcgctggatt caagggagac attattatgg actaattcaa
     7081 taagcccccg caggataatt gtcccaatga gaagaatcat tatgcggtac tttaaccccc
     7141 taaattgttc aactctgctc atgcctccaa caataaatta cagccgcgga tatcgctgtg
     7201 atcaaaacga cccaataggt aaaaactacc atcggaattg attttcccta aatcttgagt
     7261 gccgataaag gcgcatgaat agacattggc caaatctatg atgttgatcc cgccagtgcg
     7321 ctgacgcacc aaactgagcg gatcttcagg atctcgggtg agcacacgca tccaaggggg
     7381 ggcttggaac ctgccctcag acagggcata ggcttgagac ataagttcgg tcattccgta
     7441 ttcactatga atagtgttca ggccaaattg agcagataac gcttgatgca gcgcggcctt
     7501 ggtccattct gctctttttc ctttcatgcc accagtttcc ataataatgg tatttgcggg
     7561 aagttcccat ggccccagtt gggccaggtc caataaagca tacgaaacgc ccaaaagtaa
     7621 aattcgtttt ccttgggcgc ctaactgatg catgagcttt cgtaacgcgt cgagttgatc
     7681 caaataaaac ccgctttcgg catgcccaga ttgttcaata agggaattgg ccatataaac
     7741 taaggaggat ccagtgcgct ctaaatacga aggcaaaagt gccagaacga catattgctc
     7801 cacggggccg tatcgcctgg taaaagnnta aaagcctcgc taaagcagcg tttatagaac
     7861 ctcaaatcag ggactaagtg cacactcgcc gcggttcccg tggttccact tgagataaat
     7921 tccccctcgg gaaccgcggc ggcgtgcaag attttatgat ccttaaatag tcctataggg
     7981 ataaagggaa tttggtcaac ctctaggaca ttgtccggtg attttcccaa caagtcgcaa
     8041 taggttttat aaggggcaac atgtttatat tgttccgcga aaagcgacaa agcgacttga
     8101 tcgaactcac gacgggataa aggcaaaaaa atgcgctctt tgatttgttc gatttgggtc
     8161 atatccaaaa atagggaata ttgaatcaaa tcagccttaa aataccacaa cagtcttccc
     8221 ttatttttta attatttttt gggtccatgt caggtcacga tcggcgatat ttaaaaaata
     8281 taaaccgcta tttaaatgcg gaacggacca tgaattttgg tgaatatccc cccgccaaac
     8341 aatgcgtccg aaaatatttt gaatgtaaat ttctttaagc gctgaagggc gacgtatgag
     8401 tgaaaaattt tgatcaattg ggttggggac cacggcggat tgtttgtttt ttatgtccgt
     8461 gatgttgagc tgtccctcaa agcggatgtc gtcgatataa aaggcttcat tgcttgcgtt
     8521 atttcgggct tcaaccacca gttttgcgcg ctcaaaacca gtgatttgcg cggtgagtcg
     8581 caaccaacgt ccttcaatat ccaagtcgtc aatatcgtgg ccttcggtgt ttattaaatc
     8641 gattttggat ccatttgatg ggtcgactac atagatagcg atgcgatcag aattggaagc
     8701 attttgtgtt ccgtcgcctt cataggtcga ttctctgata aagagactgc aagaaaccgt
     8761 agtttctgcc gattgattta actgaatttc agaaaagttc agaataaaat taccatcaat
     8821 atcactcagg acatagcctt gatttccttc actccaggcc cctgtgattc ccgtatcatc
     8881 tgtaatcccg acatgatcac catcactcag gcctgtactg ggatcgtcat agggaacata
     8941 aaaggcgctg taaccgagat tattgccttg tccgctaaag tttagtaggg gctcatcggg
     9001 gttattgacc aaagaatgtg gtgaatttgg atcatccaaa tcgtaataaa gactgttata
     9061 cacagattgt tgctcgaagt ttgcaaggaa taattcttgg gcctgtcctg tttgagtcat
     9121 aataagacaa agcccgctca atacatgtaa tttcatgatt ttttttgttt ttgattaaac
     9181 ttggtgagga gctaaaggca atttaggggg tagcacagat tttattgaca tcaaactaat
     9241 gctgtaaaaa atgcttggtc taaattaaaa catacctttt gtaaattctg cgtatggtca
     9301 cgcgaatgct taaatccttg gttattattt atgaaatcgt gggtaatttg ttttatgtta
     9361 ccttatggtt aataattggg ctaaatttga cctcaaacac aataaaatgt atatttaaca
     9421 tcatctgcta aaaagggcca tgaagaaaaa agacatcacc attttgcttg ttgacgacga
     9481 accggatatt ctggaaattg tcgggtataa tctaacccaa gagggctatg tcgtggtgac
     9541 tgccgaaaac ggcctacgcg ctttggacca agccaaaaaa cacaagcctc aactgattat
     9601 tttggatgta atgatgccgg aaatggatgg gatagaggcc tgcgagaaat tgcgcgccat
     9661 gcctgaactt gcagaaagcg ttattacatt tttgaccgct cgtggtgagg actactctca
     9721 gctcgctggt tttgaggcag gagcagatga ttacatcact aaaccggtaa agcctaaagt
     9781 gttggtcagc aaagtcaaag ccctattgcg ccgatttaaa gaagttcaag aggcacccca
     9841 aaatctcaaa ttgggtaatt tgataattaa tcgcgaagaa tacaagatca tcaaggataa
     9901 aaaagagatg gtgcttccca gaaaggaatt tgagctgctt gcgctgttag cgtctaaacc
     9961 gggaaaagtg tttaagcgtg aagaaatttt ggatattgtc tggggcaatg aggtcattgt
    10021 cggtggccga accatcgatg tgcacattcg taaattacgc gagaaaattg gcgatgatcg
    10081 ttttaaaacg gtaaaaggag tgggttataa gtttgttgaa taatgcttgc gccgaagtca
    10141 caaacaacaa aatttgccct gaaattggca gccataattt ccattatggc tattttttta
    10201 gctctggctt tgttttacgt ttttgcccaa aggctggatt acggtcttga tttcaaggct
    10261 tatttctggc tctgcttggt ttttggtctc gtattgttca tggcgggatt tgttctcatt
    10321 cgctattacg ctcagcgatt gatttatcgg caaataaaaa aaatttacca ggatgctcag
    10381 ggtttggagc agacgcaaaa ggagcgttcc ttgatcacta cagaccttaa cgctttgact
    10441 caagaggttg aacgttttac agaaaatcgt cagcaagaat tggcgacctt aaaagacagg
    10501 gaagcctatc gtcgcgaatt tatgggcaat gtagcccatg aattaaagac acccttattt
    10561 acggtacaag gctatatttt aaccctatta gacggggcaa tgaaagataa aacggtccga
    10621 aaaaaatatt tgcaacgggc caacaaagcc gttgaacgac ttatctatat cgtcaaggat
    10681 ttggacatga ttaccaaaat tgaaatgggg gggctaaccc tggagcgtga atcctttaat
    10741 ataattgagc tgattcaaaa tgcctttgat cttcttgaaa tgaaggccca aggcaaggaa
    10801 ttgtctttgg tttttgataa ggattacaag gacagcatca tggtatatgc tgatcgggaa
    10861 cgtattcaac aagttttaac gaacttgata gacaactcca ttaagtacgg taagccctca
    10921 gggacgacag aggttgctgt tgatcggctg aacaaaaacc gatgcttggt tcgcgtgacc
    10981 gataatggtg aaggcgtcga agaaaagcat ttagcgcgtc tttttgagcg cttctataga
    11041 gtagataaaa gtggctcgcg cgccgtagga ggaagtggcc ttggtttggc catagtcaaa
    11101 cacctcatcg aggcgcataa cgagaaaata tatgttgaaa gccagtttgg ggtgggctca
    11161 gaattctcgt ttaccttgga atatgccaaa gagggtgctt aacttttctt tctgcgcagt
    11221 aacaggccat ccttcataat ctttaagttg tctcagaaga atagggtcaa atgcagattg
    11281 ctggcaataa ggagcaatcg aattttggct cagacgtttg gctaaatact cttgctcgta
    11341 ttgccccgga gttgggataa aaaaagcggg tgtttttgtt ttggccaaat ccattaccgt
    11401 cgtatagccc gagcgagata tgaccacttt actctgattg atgagggcct ctaaagcatg
    11461 gctggttaga aaattaaaaa tttgaatccc atcaataatt ttttcttgag gtgtttcttg
    11521 aataacacca caaaccataa ccaccttctg agggtaattc ttgaatttct cgcgcatgat
    11581 ctcttctaac atactccgct gaggttctgg tccggagagc aaaaccagta tgtctatagt
    11641 cggtttcagc gtttcttttt tcatccgact gatcggaccg atataggctg tagggaattt
    11701 gaaatcagga tcgttactta aaactccgct tagcgcgtct tggccttcgt aatctggaat
    11761 ccaacattgg tcgaaatttt taattatacg ctgatgtaac cagctggtaa tcggggtgga
    11821 ccacccactg agtacttgga tttggtgcgt cacaaacaca ctcggtagat tgggatgccg
    11881 tacgccgaag cgattgtcgc taatgatccc tgtaatgccg tattttttga ctagagcctc
    11941 tgtggctatg cgctctgagc gcatcacttt ggcgatattt ggaatctgta agagcagctt
    12001 ccacttgaac catttcggat ctttggtgta ggttatatcg taagccggta aggcttcagc
    12061 aggcagattg ggaaattcct gtttaagaag attcagcgcc cctttatcag aggcaataac
    12121 gacatcataa ccatgtttta caagctttcg tattatgggg atacatcgtg tggcatgccc
    12181 aagaccccag ttcagtgggg caactaaaat cacaccacct tttttctttg ccttaaactg
    12241 gtactgaccc tctttcatca aaacaaatgt aacctataat cctagacgtg tatattattg
    12301 taattttacc aaataattaa agaaccgttg tgggcagtaa aaataaactc aagagattta
    12361 aagagaatga aacttttgca aatgtcattc agccaaagcg cgatgcgctt ttggcggaca
    12421 catttgcctt aaaaggacat tggtgtgctt cattttttaa aaatgaccgg cctatagttt
    12481 tagagctggg atgcggaaag ggcgagtata ctttggcctt agcaaagcgg gatcccaata
    12541 aaaactatat agggattgac ataaaaggcg cgcgtttttg gaaaggggcc aagacggccc
    12601 tggccgatga attgaccaat gtcgggttct tgaggataca aattgagtta ttaacttatt
    12661 gttttgccca aggtgaaatt gatgagattt ggataacttt tccggatccc caaataaaat
    12721 acaaacgcac caagcatcgc ctgaccaatc gggaatttct caagagttat caaaaagtac
    12781 ttcgccccgg aggtttggtg catttgaaaa cagacagtga atttatgcac ggttatacgc
    12841 ttggtttact ccatgggctg ggccaagaca ttcactttgc gcaacatgat gtttatggta
    12901 ccacggggac ccctgaggtg gtcactgctg ttcagacgtt ctatgaatca cagtatttga
    12961 ctgaagaaaa gaaaattacc tacacaagtt tttcgctgcg cggcctctaa tgcttaattt
    13021 tataaagtga agcgtaaata cttaaacgcg aaatgacggc tttagtcaat ttttttgtag
    13081 gttacctggc gtccttaatc ggactcatac ctcctggatt gttgaatatg accgcagcca
    13141 aaattggcgt taagcaggga cgtaaacctg cgcttatttt tagtgtaggc gtaatcgtgg
    13201 tcgtgtgcgt tcaaacgggc cttggcttag cttttgcacg ttatatcgaa caacaccctg
    13261 aaattgttgn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnaacaaca
    13381 ccctgaaatt gttgatatcc ttcagaaagt aactctcggc atattcttag ccttgacatt
    13441 ttattttttt gttctggcca aggacaccag acgagaaatc ccgaaagggg ttaaacggtc
    13501 caaaacaaat cgctttttgt acggtatatt attgtcgtcg cttaatatgc tgcccatacc
    13561 gtattgggtt tatgtgagca tcagtctcag tgctttgggt tggttctttt ttgaccccca
    13621 ggttatcggt tgggctattt ttggatccgc aacagggacc tttagcatgt tattgatcta
    13681 tatttatttt tttcagcgta aactcccaat tgggaatttt gggttcaatt tgaactattt
    13741 tctcggtgct attactgggc tgatatcttt aatcacggta attcgtatat ggcaacgcat
    13801 gtaacactcg ataaaagtga tttttttgag cgcgtttata aagttgtgcg ggacatcccc
    13861 tatggtcgcg ttacgaccta cggtgctata gcaaaatcga tcggggcgcc aggggcagcg
    13921 agaaccgtag ggtatgctat gaatgcctcg cataatttgc ccgatgtgcc tgcccatcgg
    13981 gtggttaatc gcgacggtat gctcacgggg aaacatcatt ttccaggaag agatacaatg
    14041 caacgtttac tcgcccaaga aggagtgatg gtccaagacg attgtgtggt aaactttaag
    14101 gcgctttttt ggcaacccga ttcactgatt tagggtcttt tagcaatccc cttttgattc
    14161 aaaaaacatg ggggaaaagc actatgtaaa gactaatttt ctcggtatat ttgcccttta
    14221 gaacaattct aaatacggct ttgaccatgc agaaaaagga tataattgac attttagatc
    14281 ggctaacgct ccccggcgaa ggacaaagta ttagtcaaag tggcgccatt actaacatca
    14341 atatttttgg tcaagaggtg atcattgatt tgaccatgaa gacgccggct ttgcatatta
    14401 aaaagcgcgt cgtttcggat attaccaagg cgctgcaaga cgcttttggt gctgaagttg
    14461 ctccaacgat taatattaaa gttcctccag ctccggcaca ggggccgcag ctaatcaaag
    14521 gaaagcccat aaaaggaatt cagaatattg tggctgttgc ttcaggaaaa ggtggtgtcg
    14581 gtaagtctac cgttaccgct aatttggcca ttactttggc agaaatgggt tttaaagtag
    14641 gggtacttga tgcggatatt nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    14701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntacttgat gcggatattt
    14761 acggtccttc aatcccgatt atgtttgatg ttgccggagc acggccacta tcggttgagg
    14821 ttgatggcaa aagtaaaatg gagcctgtta cccaatacgg ggttaaaata ttatccattg
    14881 ggttttttac gcaacccaac caagccgtga tttggcgtgg acctatggcc gcaaaagcct
    14941 taaatcaaat gatttttgat gccgcatggg gcgaattaga tttcttgtta atcgaccttc
    15001 ctccgggtac aggcgacatt catttaagta ttctacaatc cttacccatc accggagctg
    15061 tagtggtgag tacccctcaa aatgtagctt tggctgatgc gagaaaggga gtagcgatgt
    15121 ttcagcaaga gcatatacaa gtacccgtgt taggggtggt tgaaaatatg gc
//
LOCUS       DPUP01000022            2507 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17997,
            whole genome shotgun sequence.
ACCESSION   DPUP01000022 DPUP01000000
VERSION     DPUP01000022.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..336)
                     /locus_tag="DHV98_00875"
     CDS             complement(<1..336)
                     /locus_tag="DHV98_00875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017498167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HCK04953.1"
                     /translation="MNENLDPTDHNLSPQDLDIEKKLRPLSFDDFTGQDQALENLKIF
                     VAAANQRDEALDHTLFHGPPGLGKTTLAHILASELNVGIKVTSGPVLDKPGDLAGLLT
                     NLEERDVLFI"
     gene            complement(438..2264)
                     /locus_tag="DHV98_00880"
     CDS             complement(438..2264)
                     /locus_tag="DHV98_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HCK04954.1"
                     /translation="MSAHAHDLAAEQHEDHGHHHKETFVTKYIFSQDHKMISKQYLIT
                     GLFMGIIGIGMSLIFRMQLAWPDKQFPIYEVLLGKWGLDGVMDPSVYLALVTIHGTIM
                     VFFVLTAGLSGTFSNLLIPLQIGARDMASGFLNMVSYWLFFLSSLIMVMSLFVEAGPA
                     SAGWTIYPPLSALPQAIPGSGAGMTLWLVSMAIFIASSLLGSLNYIVTVINLRTKGMS
                     MTRLPLTIWAFFVTAIIGVVSFPVLLSAALMLIMDRSFGTSFFLSDIYIAGEVLHHQG
                     GSPVLYEHLFWFLGHPEVYIVLLPALGITSEVIATNARKPIFGYRAMVASIIAIAFLS
                     TIVWGHHMFISGMNPFLGSVFTFTTLLIAIPSAVKAFNYITTLWKGNLQMNPAMLFSI
                     GLVSTFITGGLTGIILGDSALDINVHDTYFVVAHFHLVMGISALYGLFAGVYHWFPKM
                     FEGRMMNKNMGYIHFWVTAIGAYGVFFPMHFIGMAGLPRRYYTNTAFPYFDDLADVNV
                     IITIFAFIAAAAQIVFLYNFISSMFFGKMGPKNPWKSNTLEWTAEVKHIHGNWEGPIP
                     SVHRWPYDYSKRNEDDSDYVVPGQDYAPQVLPLQDNEEEMNH"
     gene            complement(2288..>2507)
                     /locus_tag="DHV98_00885"
     CDS             complement(2288..>2507)
                     /locus_tag="DHV98_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008638681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome C oxidase subunit II"
                     /protein_id="HCK04955.1"
                     /translation="QDINNIRREKSKILEASGDEALAPYEFDYLLLCNKICGNNHYNM
                     QMKIVVETQEEFEAWLAEQGSVAKTLVQ"
BASE COUNT          799 a          564 c          474 g          670 t
ORIGIN      
        1 aataaaaagt acatcgcgct cttccagatt agtgagtaga cccgccaaat ctccaggttt
       61 atccaataca gggccagaag ttactttaat gccgacattt aattcactgg ccaaaatatg
      121 ggctaaggtc gtcttaccca atccgggagg accatgaaac aaggtatgat ccaaagcttc
      181 atcacgctga tttgccgccg caacaaaaat tttcagattc tctagggcct ggtcctgccc
      241 agtaaaatca tcaaaactca aaggccttaa tttcttttca atatcaaggt cttgtgggct
      301 taagttatgg tctgttggat ctaagttttc gttcataaaa acaaatatac aaagtgttcc
      361 tcatgcaata ccataaaaaa acccccacac tcggcagggg ttcctataaa ttgaacacaa
      421 ataaattaga atagcctcta gtgattcatt tcctcttcat tatcctgaag tggcaacacc
      481 tgaggagcat aatcttgccc tgggactaca taatcactat catcttcgtt acgcttactg
      541 taatcataag gccaacgatg tactgatggt attggacctt cccagttccc atgaatatgc
      601 tttacctcgg cagtccactc tagcgtattc gatttccatg ggttttttgg gcccatttta
      661 ccaaagaaca tggaagaaat aaagttgtat aagaacacaa tttgagccgc agcagcgata
      721 aaagcgaaaa tcgtaataat gacattgaca tctgctaaat catcaaaata cgggaatgcc
      781 gtattggtgt aataacgtct tggtaatcct gccattccga taaagtgcat tgggaaaaag
      841 accccgtatg cgccaatagc cgtaacccaa aagtgaatat agcccatgtt tttattcatc
      901 attcgccctt cgaacatctt tggaaaccaa tgataaaccc ccgcgaaaag tccatatagc
      961 gcagaaattc ccattactaa gtgaaagtgc gctacaacga aatacgtgtc gtgtacatta
     1021 atatctaagg cactatctcc gagaataatt ccggtgagtc ctccagtaat aaaggtagag
     1081 accaaaccga tagaaaacag catcgccggg ttcatctgca aattaccttt ccataaggtg
     1141 gttatatagt taaacgcctt aaccgcagaa ggaatcgcaa taagtaaggt ggtaaaggta
     1201 aatactgaac ctaaaaatgg attcatccca gagataaaca tatggtgccc ccaaactatt
     1261 gttgatagga aggcgatcgc gataatagaa gcgaccatag cgcggtagcc aaaaatcggt
     1321 tttctagcat ttgttgcaat cacttctgag gtaattccca gtgccggcaa taaaacaata
     1381 tatacttcag ggtgtcctag gaaccagaac aagtgttcat agagtactgg agagcctcct
     1441 tgatgatgca atacttctcc cgcaatataa atatcactca agaagaatga agtcccgaag
     1501 ctacgatcca tgatgagcat gagcgccgca gacaataaca caggaaaaga aacaacccca
     1561 atgattgccg tcacaaaaaa tgcccaaata gtcagcggca agcgcgtcat ggacattcct
     1621 ttggtgcgta aattaatgac cgttacaatg taattcagtg atcctaataa tgaggatgca
     1681 atgaagatcg ccattgagac gagccaaagg gtcatccctg cgcctgagcc aggaattgct
     1741 tgtggcaaag cgctaagtgg agggtatatg gtccatcctg ccgatgctgg tcctgcctcg
     1801 acaaataaag acataaccat aattaaactc gagagaaaaa ataaccaata ggataccata
     1861 ttcaaaaagc cagaggccat atctcgggca ccaatttgaa gcggaatcaa aagattacta
     1921 aaagtaccac taaggcctgc agtcaataca aaaaagacca ttatcgttcc gtgtatagtc
     1981 accaatgcca aataaacact cggatccatt accccatcta atccccattt tccaagaagc
     2041 acttcataaa tcgggaactg cttatctggc caagccaatt gcattctgaa tatcaaggac
     2101 attccaatac caataatccc catgaacaat cctgtaatca ggtattgttt tgaaatcatt
     2161 ttgtgatctt ggctaaagat gtatttggtg acaaaagtct ccttgtgatg atgtccgtga
     2221 tcctcgtgct gctctgctgc taaatcgtgt gcgtgtgctg acatatctct cttttgattt
     2281 tttttaatta ctgaactaaa gttttggcaa cagatccttg ttctgctaac caagcctcaa
     2341 actcttcttg ggtctccact acgatcttca tctgcatatt gtagtggtta tttccacaaa
     2401 tcttgttaca caataacaag taatcgaact cataaggcgc caaggcttca tcacctgatg
     2461 cctctaatat tttacttttt tctcttcgaa tgttattgat gtcttgg
//
LOCUS       DPUP01000023            4259 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12629,
            whole genome shotgun sequence.
ACCESSION   DPUP01000023 DPUP01000000
VERSION     DPUP01000023.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4259)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..341
                     /locus_tag="DHV98_00890"
     CDS             <1..341
                     /locus_tag="DHV98_00890"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04956.1"
                     /translation="FRADMSLRAELDLNMRFTQTNDIIATQGFSMTPALGLEFGYLDI
                     VYARMGAGNLQNGVDIFGETTTEFQPNLGLGFKYKGIKVDYALTDIGDQSTALYSNIF
                     SLTLDWSYFR"
     assembly_gap    488..551
                     /estimated_length=64
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <552..1843
                     /locus_tag="DHV98_00895"
     CDS             <552..1843
                     /locus_tag="DHV98_00895"
                     /inference="COORDINATES: protein motif:HMM:PF13387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04957.1"
                     /translation="AFQARVGALMLFMVFGQSPLALTQTKEQQTLSQEATISILTVGP
                     GTALYDRFGHSAFRVKDPVNNIDWTFNYGTYDFNAPNFYGKFVQGQLLYSLSAGYFQG
                     FINYYKKQNRSVREQVLNLETEQRDRLFSFLLWNAEPANKDYRYDFLNDNCATRIRDV
                     LVRNLGDQLNYTDGFDPAPMSFRQLIQGQVPYNDWGSLGMNIAIGAVVDVPATPWQFQ
                     FLPRYVAEAHAEATINTADETQPLIKSDVMLFAPVLSEGAVAKTRSKSSAESELPTES
                     HVGVIGFLTAPLFFMSLLGLGLILISWRDHGRAQRCILTDRIIWSLTGFIGVLLVLLW
                     FGTDHFATKMNYNLLWAMPVSIVVWVLSFKKSSVRWLASYQLFLILMLVLMIMHQFTG
                     VQSFAPTLWPLIGGLLVRFLFSYSALKKEAKLLPAHE"
     gene            complement(1823..2128)
                     /locus_tag="DHV98_00900"
                     /pseudo
     CDS             complement(1823..2128)
                     /locus_tag="DHV98_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989001.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2256..3119
                     /locus_tag="DHV98_00905"
     CDS             2256..3119
                     /locus_tag="DHV98_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008637455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCK04958.1"
                     /translation="MIKLDTFRYALSSYSKFLWRSTNAHGIHSPFVYDLVTKCFYDQK
                     KYPQYAILQTIRKELGRSNHIIQVLDFGAGSRAPGLQKSQTRRVKKMLSSAATSAKRQ
                     RLFMRLVQYFEPENILELGTHLGMGTLAIKLGIPEAEITSVEGCQNTFEFTKNNIERW
                     LSKTMPADKPLKSGQIKLVNSSFAEYFEKRSKDRDAQQKISSQKFDLIYLDGHHNGPA
                     TLDYFEQIKRQVHKDSLVIIDDIHWSQSMTAEWNKIIKDPQVTVSIDTYFWGLIFFRK
                     EQAKEHFVVRV"
     gene            3156..3842
                     /locus_tag="DHV98_00910"
     CDS             3156..3842
                     /locus_tag="DHV98_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013188317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding protein"
                     /protein_id="HCK04959.1"
                     /translation="MSSVIKIRSITRDFPLGQEIVKVLKGIDLDIQKGEYVALMGPSG
                     SGKSTLMNLLGCLDTPTSGYYELNGVDVSSMSDDALAEIRNKEIGFVFQTFNLLPRTT
                     ALDNVALPMVYAGAPISKRHKRASEVLADVGLSDRMDHKPNQLSGGQRQRVAIGRALV
                     NKPSIILADEPTGNLDSKTSLEIMQLFDDIHQAGNTVILVTHEEDIAAHAQRIIRLRD
                     GIIESDTKTK"
     gene            3990..>4259
                     /locus_tag="DHV98_00915"
     CDS             3990..>4259
                     /locus_tag="DHV98_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004571062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP:cob(I)alamin adenosyltransferase"
                     /protein_id="HCK04960.1"
                     /translation="MKIYTKTGDQGNTSLFDGARVPKHHQRIEAYGTLDELNAYIGLL
                     MSQGIAQEYKKQLGAIQNELFVLGAQLANPQDDSTTKSRKTPAIGP"
BASE COUNT         1199 a          924 c          938 g         1134 t
ORIGIN      
        1 aatttcgcgc agatatgagc ctgcgcgctg agcttgattt gaatatgcgc tttactcaaa
       61 ccaatgatat catagccact caggggttta gcatgactcc ggccttgggt ctagaatttg
      121 gttatctcga catcgtctat gcgcgcatgg gtgcaggaaa tcttcaaaat ggcgtggata
      181 tttttggcga gaccaccaca gagtttcagc ccaatctagg gcttggattc aaatacaagg
      241 gcatcaaagt ggattatgca ttgaccgata ttggcgacca aagcacggcc ttgtacagca
      301 atattttttc tttgacctta gactggtctt attttagata attttacgca aacataatga
      361 tgacccttaa tcaatctcga atgagtctat cggctaaagt tataggatta cacccaatga
      421 tttttaagaa ggcctttcag acccgggtgg gcgttttgat gttgtttatg gtcttcggac
      481 aaagtccnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn naggcctttc aggcccgggt gggcgctttg atgttgttta tggtctttgg
      601 acaaagtcct ttggctttga ctcaaactaa ggagcaacag actttatcac aggaagctac
      661 aatcagcata ttaaccgtag gacctgggac agccctatac gatcgatttg gtcatagcgc
      721 ttttcgcgta aaagaccccg tcaataacat cgactggact tttaattatg ggacctatga
      781 ctttaacgca ccaaatttct acggaaaatt tgttcaagga caattattgt attccttaag
      841 tgctggctat ttccagggat ttatcaatta ctataaaaaa caaaatcgca gcgtccgcga
      901 gcaggtttta aatcttgaaa ccgagcaaag agaccgtctg ttttcgtttt tgttatggaa
      961 tgctgaaccg gccaataaag actaccgtta cgacttcctt aatgataact gcgccacaag
     1021 gattcgggat gtgttggtcc gtaatttagg ggatcagcta aattacacgg atgggtttga
     1081 tcccgcgcca atgagcttca gacaactgat ccaaggtcaa gtgccctata acgattgggg
     1141 cagtcttggg atgaacattg ccattggcgc ggtagtcgat gtgcccgcaa cgccttggca
     1201 gtttcagttt ttacccaggt atgtggccga ggcgcatgcc gaggccacaa taaacacggc
     1261 agatgagact cagccgctca ttaaaagtga tgtgatgttg ttcgcccctg ttttgagcga
     1321 aggtgcagtt gccaaaacac ggtctaagtc tagcgcggaa tctgaactgc ccactgaatc
     1381 ccatgttggg gtcattggat ttttaaccgc acccctattt tttatgagtc ttttggggct
     1441 tggcttgatt ctcattagct ggcgtgatca tggacgagcc cagcgctgca tactcaccga
     1501 tcgcattatc tggagcttaa ccggatttat tggtgtttta ttggtgctgc tttggtttgg
     1561 aaccgatcat tttgcgacca aaatgaatta taatttgctt tgggccatgc ctgtatcaat
     1621 agtggtttgg gtattgagtt ttaaaaagtc aagtgtgcga tggctcgcta gttaccagtt
     1681 atttttgatc ttgatgctgg tgctgatgat catgcatcag tttacggggg tgcagtcgtt
     1741 tgccccgacg ctttggccat taattggagg attattggtg cgctttttat tcagttattc
     1801 ggcccttaaa aaggaagcga aattactgcc cgcgcatgaa taagaccgta gagagggtct
     1861 taatgtagat gctcaaatcc aagaaaatcg agcgattttt tatgtagtac aagtcttact
     1921 gaagtttaat cagggcgtca tctttgctgg ttccataatt atgattcact tgcgcccaac
     1981 ccgtaagtcc cggtttgatt acatgtcgca catcgtaaaa tggaatttgc tcgcttaaat
     2041 ctttaacaaa ttctgggcgc tcgggacgtg gaccgataaa taaagtaagt aaagccaata
     2101 gatataatgc gtttttgggc atagccatgg ggttgtttgc acaaatataa cctaaggcaa
     2161 ttaaaaacaa aatgcttttg ctcgcgaact ctaatatttg cctttatttt gtaagggatc
     2221 cgtttgctcc ttagcacaat ggccgcatta gcatcatgat caaattagac acttttcgat
     2281 acgctctttc aagctattca aaatttcttt ggcgctcgac caatgcccat ggaatccatt
     2341 caccctttgt ctatgacctg gtcactaaat gcttttatga ccaaaaaaag tatcctcaat
     2401 atgccatact tcaaacaatc cggaaggaac taggccgctc aaaccacatc attcaagtcc
     2461 ttgattttgg cgctggctct agagcgccag gtttacaaaa aagtcaaacc cgccgcgtaa
     2521 agaagatgct cagtagcgca gcgacctctg caaaaagaca gcggttgttc atgcgcttgg
     2581 tccaatattt tgagcccgag aatatattgg agctgggcac ccatctcggc atgggaacct
     2641 tagccattaa actcggaatt ccagaggccg aaataaccag tgtcgaaggc tgccagaata
     2701 cttttgaatt cacaaaaaat aatatagaac gttggctgag taaaacaatg ccggcggata
     2761 aacccctcaa atcaggccaa ataaaactcg tgaacagctc atttgctgaa tactttgaaa
     2821 agcgaagcaa agacagggat gctcagcaga aaatatcatc ccaaaaattc gacctgattt
     2881 accttgatgg gcatcacaat ggcccagcaa ctctggatta ttttgagcaa ataaagcgtc
     2941 aagttcacaa ggattcactg gtgatcatcg acgacattca ctggtctcaa tccatgacgg
     3001 cggaatggaa taaaataata aaagaccccc aggtcacggt aagtattgat acttactttt
     3061 ggggcctcat cttttttcgc aaagaacagg ctaaggagca ctttgtggtg cgcgtctaaa
     3121 taaaataagt aactttatca ctcaaaaaaa aatacatgag cagtgtcata aaaatacgct
     3181 cgatcacccg cgattttccg ctgggtcaag agattgttaa agtattgaaa ggtatagatt
     3241 tagacatcca aaagggtgag tacgtggctt tgatggggcc ttctgggtca ggcaaatcga
     3301 ccttaatgaa tttactgggt tgcctagaca ccccaacctc cggctattac gagcttaatg
     3361 gagtcgatgt aagcagcatg agcgatgatg ctctggcaga aattcgaaat aaagaaatag
     3421 gatttgtttt ccaaaccttt aatcttttac cacgaaccac tgcattagat aatgtcgcgc
     3481 tccccatggt ttatgccggg gcacccatat ctaagcgcca caaaagagcc agtgaagttt
     3541 tggcagatgt gggcttatcc gatagaatgg atcacaagcc taatcagctc tcaggaggcc
     3601 aaaggcaacg cgttgctata ggccgcgccc tagtaaacaa accctccata atattagcag
     3661 acgaacccac agggaatctc gattcgaaaa cctcattgga aattatgcag ctcttcgatg
     3721 acattcacca agcaggcaat acagttattt tggtgaccca tgaagaggac attgccgccc
     3781 atgcccagcg cataatccgg cttagagatg gaataatcga aagcgacact aaaacaaaat
     3841 aacccatgct cccctggact ttaatcgcgt ttttactttt ggtcgtggtg gtttggaata
     3901 actttcgggt gcaaaagaca agacgccagc gcagtcagcg taattttcgt aatggtctgc
     3961 gccaaaaacg tcaaaataaa aactagctca tgaaaatcta tactaaaaca ggagaccaag
     4021 gcaatacgtc actttttgac ggggcgcgtg tcccaaagca ccatcaacgc attgaagcct
     4081 acggaacact ggatgagctt aatgcctata ttggactgtt aatgagccaa ggcattgctc
     4141 aggaatacaa aaaacagctc ggtgccatcc aaaacgaact ctttgtccta ggcgctcagc
     4201 tcgcaaaccc gcaggacgat tccacgacaa aatcgcgtaa aacccccgca atcggtccg
//
LOCUS       DPUP01000024            2918 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7702,
            whole genome shotgun sequence.
ACCESSION   DPUP01000024 DPUP01000000
VERSION     DPUP01000024.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2918)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2918)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2918
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..475
                     /locus_tag="DHV98_00920"
     CDS             <1..475
                     /locus_tag="DHV98_00920"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04961.1"
                     /translation="QETASELVAGTHGRSIYIADLNPIQQYVAQGAQGLFVLTPKSVR
                     FSNRWGKSYSDWSAPRMPDFSLEFFSPKQGQATISLKGSGKQAIWEKSLQVAQGYNHW
                     PYDLTLNPDQLKAFKKATGQVVAYKEGAPLFLPKGTYTLEVSAGGQIRSVLLNIE"
     gene            605..1293
                     /locus_tag="DHV98_00925"
                     /pseudo
     CDS             605..1293
                     /locus_tag="DHV98_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751004.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
     assembly_gap    941..974
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1305..2918
                     /locus_tag="DHV98_00930"
                     /pseudo
     CDS             1305..2918
                     /locus_tag="DHV98_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569262.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
     assembly_gap    1604..1667
                     /estimated_length=64
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          762 a          605 c          677 g          776 t
ORIGIN      
        1 gcaagaaacc gcttcagagc tcgttgccgg gactcatggc cgttcaatat atatcgcaga
       61 tctaaacccg attcagcaat atgtcgccca aggcgctcag ggactttttg ttctgacgcc
      121 aaagtccgtg cgattttcaa atcgctgggg gaagtcctac agcgattggt cagcaccaag
      181 aatgccggat ttttcacttg aattttttag cccaaaacag ggccaggcga ccatcagctt
      241 aaaaggttct ggcaaacaag ccatttggga gaagtcactg caggtcgctc aaggatacaa
      301 tcattggccg tatgatttga ccctaaatcc agatcaatta aaggccttta aaaaggcgac
      361 gggtcaagtg gttgcatata aagagggggc gcccctattt ctgcccaaag gcacgtacac
      421 tttagaggtc agtgcgggcg ggcaaatccg ttcggtgctc ctgaatattg agtaaataaa
      481 tcatttcgaa atacattcca gtaaaaggag atgatcgcta ttgtggttgg gcgaaaacct
      541 cgagcaaagt ttgttaatga ttgctttggg tattactttt gctggactaa atgaaaaaga
      601 agatatgagc ctactttcct cttcagtaac ccgcaaattt gccatggcct tatcagggct
      661 gtttttggtg gtttttctca cccagcattt tgtcatcaac attacttctg ttttggcacc
      721 tgaggtattt aatcagtggt ctcattttat gggaaccaat ggtttggttc aaggggtttt
      781 acaaccgatt ttaatttttg gtgttgtgtt tcacttcatc atgggatttg tattagaaat
      841 ccaaaaccgc cgtgcgcgtt ccgtgcgcta tgtgcagtat aagggcggtg cttctgccag
      901 ttgggcctct cgaaatatga ttatttctgg cgcagtcgtc nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnaggact ccatttttac gatttctggt ggccagaaat aatgcacaaa
     1021 tatattgagt cgcacccaga agacccaact cgttattatt tagaaacagt gcataaattc
     1081 gaaaacccag tgcgcgttgg gctttatgcg acggcatttg ttttgcttgc cttgcattta
     1141 tggcatggct ttgcgtcttc gttccaaagt gtagggttcg acaataaata cgctaaggga
     1201 ctcaaaggat tcacgaaatt ttttgcggta tttatcccgc taggcttttt atttattgcc
     1261 ctttatcatc atttaaatcc aatcgcacac taaacgcctg atacatgtca ttagactcaa
     1321 aaatccctca gggaccgata gcagaaaagt ggaccaaaca caagacatcg atcgatttgg
     1381 tcaaccccgc aaataagaga aatcttgatg tcatcgttgt gggaacaggg cttgcaggag
     1441 gaagcgcagc ggcttctttg gcagagctcg gatacaatgt gaaaacgttt tgctatcaag
     1501 attcaccgcg gcgcgcgcac tcaatagccg ctcaaggggg aatcaatgct gcaaaaaact
     1561 accaaggaga tggggattct acctatcgat tgttttatga tacnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnntat cgattgtttt
     1681 atgataccat aaaaggagga gattatcgtt ccagagaggc caatgtgcac cgtttggctg
     1741 aggtctcagg aaatattatt gatcaatgtg ttgctcaagg tgttcccttt gctcgcgaat
     1801 acggaggact ccttgataac cgttcttttg gaggggtact cgtgtcgcgt accttttatg
     1861 ctaaagggca aaccggacaa caacttcttt tgggcgctta ctcggccatg aaccgtcaaa
     1921 tcaatcgtgg taaaattaag ccctataacc gtcatgaaat gctcgatttg gtcatcatag
     1981 acggtaaggc aagaggaata atagcccgta atttagtcac cggagaatta gagcggcact
     2041 cggcccacgc tgtggttatt gcctctgggg gttacggaaa tgtctttttc ttatcgacta
     2101 acgccatggg cagtaatgtg actgcatcct ggaagattca taaaaaaggc gcgcattttg
     2161 ccaacccgtg ctacacgcaa attcacccga cctgtattcc cgtttctgga gatcatcaat
     2221 ctaaactgac tttgatgtct gagtctttga gaaatgatgg tagaatttgg gttccggcca
     2281 agttggagga cgctcaagcg attcgagaag gacgtttaaa gcccactcag attaaagagg
     2341 aagatcgcga ctatttctta gagcgccgtt atccatcttt tggtaacctt gtcccgcgtg
     2401 atgtagcctc tcgtgctgcc aaagaacgat gcgatgcggg atatggcgtc aataaaactg
     2461 gtgaagcggt ctatctagat tttggagcgg ccattatgcg ctacggaaaa gaacaggcag
     2521 ttatccacca tttatacgag gcttcagagg ataaaattcg cgaattaggc gaggccgtgg
     2581 tcgaagccaa atacggaaac ctattccaga tgtacgaaaa gatcgtcgat caaaacccat
     2641 acaaaacacc gatgatgatt tatcctgcgg tgcattatac tatggggggt gtttgggtgg
     2701 attataattt gatgacgact attccagggt gctactctgc tggagaggca aactttagtg
     2761 atcacggggc aaaccgactt ggagcaagtg ccttgatgca aggtttggcc gacggctatt
     2821 tcgtattgcc ctacaccatc ggagattatc tgtctgacga tattcttacc ggaaaaatct
     2881 caacagacgc tccagaattt gaagcggccg aaaaacaa
//
LOCUS       DPUP01000025            3346 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_33118,
            whole genome shotgun sequence.
ACCESSION   DPUP01000025 DPUP01000000
VERSION     DPUP01000025.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3346)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3346
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..712)
                     /locus_tag="DHV98_00935"
                     /pseudo
     CDS             complement(1..712)
                     /locus_tag="DHV98_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016199481.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
     assembly_gap    526..607
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            826..1803
                     /locus_tag="DHV98_00940"
     CDS             826..1803
                     /locus_tag="DHV98_00940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HCK04962.1"
                     /translation="MSKVKYYYDAQTLSYRKIKPKRGRKIGLFFLTLIGIFFSGFLLL
                     LAYINIPSLETPKERELRREIAQLELQYDLLNKKMDQAEVVLDQLAQRDNTLYRTYFE
                     SNPIPDEQRKAGFGGVNRYRNLEGFDHTDMLRTTSERLDVLTKQIVVQSRSLDEIARM
                     AATKEKLLEAIPAIQPVNNEDLTRMASGFGYRRDPFTKARKFHYGMDFTAPRGTPIYA
                     TGDGVVKRADNRSTGFGNHIRIDHGFGYMSIYAHLFKYNVRRGQRVKRGDLIGFVGST
                     GRSEAPHLHYEIHKDGRRINPINFYYGNLTPEEYAKMLALSQQENQSLD"
     gene            1803..2129
                     /locus_tag="DHV98_00945"
     CDS             1803..2129
                     /locus_tag="DHV98_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK04963.1"
                     /translation="MHVNLPDKRYYSIGELAKAFEVNPSLIRFWEKEFDILQPKKNAK
                     GNRKFTPEDVKNLSQIYHLVKERGFTLDGAKIHLKTQKGRSEDFDLIQKLESIKAQLL
                     RIKDQL"
     gene            complement(2149..3346)
                     /locus_tag="DHV98_00950"
                     /pseudo
     CDS             complement(2149..3346)
                     /locus_tag="DHV98_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648146.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
     assembly_gap    2820..2877
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          887 a          771 c          651 g          897 t
ORIGIN      
        1 tgcatgaaca ccaaattcca tatctcaacc acaagcgggt ggtctttatt gaccagtgct
       61 gctccgggat gggcatcgcg ttcctttttg gggcgcaaat caacgtgaat ctcactgcag
      121 ggcccacaag gaccctgatc ccccatctcc cagaagttat cttttttatt gccatcaata
      181 atatgtgcct catctacaag tccgcgccaa agatcatagg cctcagtgtc tttttcaagg
      241 ccctcactgg catccccttc aaaaatcgtt acatataaag tggccttgtc aatattgtaa
      301 acttttgtaa gcaattccca agcccattcg atggcttctt ttttgaagta gtcgccaaag
      361 ctccaattcc cgagcatttc aaacatggtg tggtgataag tatccatccc cacctcttct
      421 aggtcattgt gttttccgct cacgcgaaga cacttttggg tatctgtgat tctcgagtga
      481 tccgccgctt tgttgcctaa gaaatactcc ttgaactggt tcattnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnncaa ggttgggtcc ccttgaatga ccataggggc agagggcacc acggcatggc
      661 ctttggcctt gaaataatct aaaaattttt gtcggattac tgcagatgtc atatttctgt
      721 gttctggtcg tcaggatgct aagtctagca aacaattttt atctttgcct tgcgttaaac
      781 tcaggaatca cttgaattca tcgcaaaaat agaacttttt aaattatgtc taaggtaaaa
      841 tattactacg acgcgcaaac gctttcctac cgcaaaatca aaccaaaacg cggtagaaaa
      901 atcggtttgt ttttcctgac cctcatcggt atttttttca gtgggttctt attgcttttg
      961 gcctatatta acatccctag tctggaaacc ccaaaagagc gagaactgcg tcgtgaaatc
     1021 gcacagcttg aattgcaata cgatttatta aacaaaaaga tggaccaggc cgaagtggtc
     1081 ctcgatcagc tcgctcagag agataatacc ctttatcgca cttattttga aagcaaccct
     1141 atccccgatg agcagcgcaa agccgggttt ggtggtgtga accgctatcg aaatttagaa
     1201 ggttttgacc ataccgacat gctgcgcaca accagtgaac gtctggatgt attgaccaag
     1261 cagattgtgg ttcagtcgcg ttccttggat gaaattgcgc gtatggcggc caccaaagaa
     1321 aagctactcg aggccatccc cgcgattcag cccgtaaata acgaagattt aacgcgcatg
     1381 gcctctggct ttggctatcg ccgggacccc tttaccaagg cccgtaaatt tcattacggc
     1441 atggatttta ccgcgccccg cgggacgccg atttatgcta cgggtgatgg tgtggttaag
     1501 cgggccgaca accgatctac cgggtttggc aaccacattc gcattgatca cggttttggc
     1561 tatatgagca tttacgccca cttatttaaa tataatgtcc gtcgtggaca acgcgttaaa
     1621 cgcggcgatt taatcggatt tgttggaagt acgggacgca gtgaagcgcc ccatttacat
     1681 tatgaaatcc acaaagatgg acgccgtatt aacccgataa acttctacta cggtaattta
     1741 acccctgagg aatatgcaaa aatgctggcc ttgtcgcaac aagaaaacca atctctagat
     1801 taatgcacgt taatctaccc gataagcgct attacagcat aggcgaattg gccaaagctt
     1861 ttgaagtaaa cccttcatta attcgctttt gggaaaaaga atttgatatt cttcaaccca
     1921 aaaaaaatgc taagggcaac agaaaattta ctccagaaga cgtcaaaaat ctgtctcaga
     1981 tttatcatct cgtgaaagaa cgcggattta ccttagacgg tgctaaaatt catctcaaaa
     2041 cgcaaaaggg gcgatccgaa gactttgatt tgattcaaaa attagaatcg atcaaagccc
     2101 aactattgcg cattaaagat caattgtaaa agatttagaa tctgaaaatt atttctttcg
     2161 cagatatacg gtaatgggca caccgttaaa gtcaaaattc tctcttaact tgttttctag
     2221 aaaacgcttg taaggctctt ttacgtattg aggtagattg gcaaagaacg caaagctcgg
     2281 atagggcgta ggcagctgag tgcaaaattt tattttgacg tatttccctt taaccgcagg
     2341 aggcggcgtg gcctgaatta tcggcaacat cacatcgttc aactgactgg tcttaacctt
     2401 tttgcttcgg ttttcgtaaa ccttaaccgc ggtttctata gccttaaaaa tgcgctgttt
     2461 ggaaagggcg ctcataaaga ctatgggcac atcaacaaag ggctcacatt gttttttgat
     2521 gtattgctcc atctcttttg tcgtcttgtt gtccttttca acaagatccc atttgttggc
     2581 caaaatcacg acccccttat tgttgcgctg agccagccaa aatatatttt gaacctgacc
     2641 atcaaaacct cgagtggcat caaaaaccaa aagcacgaca tcgcaatgct caatggcgcg
     2701 cacactgcgc ataacgctgt aaaattcaag atcttccttg accttactct tcttgcgtat
     2761 tcctgcagtg tccaccaggt taaaatcaaa accaaagcga ttgtattgag tatctatgcn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncga
     2881 ttgtattgag tatctatgct gtctcgtgtg gtccccgcaa tgtcggtcac cacaaatcga
     2941 tcttgaccga ttaaggcatt aataaatgaa gatttcccag cattaggacg tcccaccaca
     3001 gcaaagcgag gcaattctga ctcttggctt tcaccctgtt ctggtagcgc tgaagcaact
     3061 gcatcgagca aatcccccgt tccactgccg ttgatactcg aaatagtaaa gtattgatca
     3121 acgcctaaag cataaaattc tgcggcatct tgttccttat tggcactgtc caccttattc
     3181 acagccaaga agtaaggctt tttgctgcgt cgcagtagct gggccacttc ctgatccatt
     3241 cccgttaccc cgtgactcac atcgaccata aaaatgatga catctgcctc accaatggcg
     3301 agctcaacct gcttgtcgat ttcagcctca aaaatatcat cactcc
//
LOCUS       DPUP01000026            3701 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14569,
            whole genome shotgun sequence.
ACCESSION   DPUP01000026 DPUP01000000
VERSION     DPUP01000026.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3701)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3701)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3701
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..584
                     /locus_tag="DHV98_00955"
     CDS             <1..584
                     /locus_tag="DHV98_00955"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="heavy metal transporter"
                     /protein_id="HCK04964.1"
                     /translation="VIQLIPAKFTVLTQDQYLAGRKKSIKTDKPLAKASVSKWRQLRP
                     LFLIFAFLFGVNALNALVYQFSFEAFMLDFMAGFFLVFSFFKFLDLKGFVSAFSGYDP
                     IANRLGLYGWIYPFIELTLGLLLLTNTGVNFALYATLFILGVTTIGVIQQLRQRNKIV
                     CACLGSVLNLPMTEATLIENLVMILMAGMLLIG"
     gene            626..>2839
                     /locus_tag="DHV98_00960"
     CDS             626..>2839
                     /locus_tag="DHV98_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK04965.1"
                     /translation="MLALMVPALMNGQITLKGELFDSTAGQKQTLFGANVYHPQSQSG
                     TITDENGEFSLEISRLPARLVVSYVGYQSDTLDIKDVSFISYGLSPESDLEQVVVKTR
                     RSSQFISSFSTEQVIRVSSDELLKAACCNLSESFETNPAIDVNFSDAVTGTKQIKMLG
                     LTSPYILITAENIPVVRGAAQSLGLSYVPGTWVESMQITKGAGSVINGYESIAGQINV
                     ELQKPVSDQPFYFNAFLAGNGRQEFNAHLNTVVSDKWHTGIYLHGNQRQRSVDRNNDG
                     YLDTPIAKQLNVLNRWQYIDGERGLVSFINARVLRDHKISGQSAFRADLAPQSQNAWG
                     STIETDRADLSAKLGYVNPDITWQTAGIQGAWSLHNQKSSFGLRPYDIDHQSAYLTLL
                     YNSIISDTRHKIKFGLNGTYDHYEERLSLDALGVNETRFNRTERGIGVFTEYAYNDLD
                     KLGVTLGLRLDQHNLLGLFFTPRLHLKYQILPETTLRGSIGRGKRIPNIFSEHLNVFT
                     TGRNIIIETGSDRPENNPQESTGNFYGLHPEIAWNYGFSLQQKISVGTRKMTLGFDYY
                     RTDFERQVVVDWEQVGSVRFYNNVGSSWAQSYQFDLSYRPWDLFDMQLAYKYYDLSTA
                     FDSGDKRPILTPEHRVFANLAYELKGIRPNHPLKFDVTFNWLGNQRLPELPQVAALYG
                     QSFTPTVMTLSGQITKQWGPHFDLYFGVENIGDLRQDQPIINGDQPFDSDFDSSMV"
     assembly_gap    2840..2916
                     /estimated_length=77
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3079..>3404
                     /locus_tag="DHV98_00965"
     CDS             3079..>3404
                     /locus_tag="DHV98_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCK04966.1"
                     /translation="MKNLITLLAVFMAMNLSAQDKNAKGSLEVDGVCGMCKARIEKAA
                     IKLTGVKSVQWSVESHELKVIYDARKTNLDSIAKQVANAGHDTKKFTAPDAAYNAVNP
                     CCKYRD"
     assembly_gap    3405..3557
                     /estimated_length=153
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          996 a          656 c          798 g         1021 t
ORIGIN      
        1 cggtcatcca attaattccc gctaaattta cagtgcttac gcaagatcaa tatctcgctg
       61 gccgaaagaa gtcaataaaa acagacaagc ccctggccaa ggcatctgtg tccaaatggc
      121 gtcaattgcg ccctttgttc ctgattttcg catttctgtt cggggtaaat gcccttaatg
      181 ccttagtgta tcagtttagc tttgaagcat ttatgttgga ctttatggca ggattttttc
      241 tcgtctttag tttttttaag tttttagatt taaagggttt tgttagtgca ttttccggat
      301 acgatcccat agccaatcgc ttgggtcttt acggatggat ttaccctttt attgaattga
      361 ctttaggttt gttgttgttg acgaatacag gggtgaattt tgcgctttac gctaccctgt
      421 tcattttggg cgtaaccacc ataggggtga ttcaacagtt gcgtcagcgc aataaaattg
      481 tttgcgcctg tttgggtagc gttttaaact tgccaatgac cgaagccaca ttaattgaga
      541 atcttgtcat gatcctcatg gccggaatgt tactcatcgg ataatggata tttcgttcaa
      601 aaaaaatatt ggatttacgg gactcatgct ggccttgatg gtccctgcgc taatgaatgg
      661 gcaaatcact ttaaaaggtg agctctttga ttctaccgca ggtcaaaagc agacactctt
      721 tggggctaat gtctatcatc cacaaagtca atccggaaca attaccgacg aaaatggcga
      781 atttagtcta gaaatttcca gattaccggc gcgccttgta gtgagctatg tcggttatca
      841 atcggacacc ctggatatta aggatgtatc gtttatttca tatgggctta gtccggaaag
      901 tgacttggaa caagtcgttg ttaagactcg gagaagttct caatttattt cgtcattcag
      961 tactgagcag gttattcgtg tgagtagtga tgaattatta aaggccgcct gttgtaacct
     1021 ttctgagagt tttgaaacga acccggccat cgatgtaaat ttttcagatg cggtcacggg
     1081 aacaaaacaa atcaaaatgc tcgggctaac cagtccttat attttaatta ctgcagaaaa
     1141 cattccagtg gtgcgcggtg ccgcgcagag ccttggactg agttatgttc cagggacttg
     1201 ggtggaaagt atgcaaatta ccaagggtgc cggtagtgtc atcaatggct atgagagcat
     1261 tgcgggtcaa atcaacgtgg agttgcaaaa gccggtcagt gatcagcctt tttatttcaa
     1321 cgcatttttg gcaggtaatg gtcgacaaga atttaatgcc catttgaata ctgtggtaag
     1381 cgataaatgg catacgggta tttatttaca tggcaatcaa cgccagcggt ctgtggatcg
     1441 caataatgac ggatatttag acacccctat tgctaaacag ctcaatgttt taaaccgatg
     1501 gcagtacatt gatggtgagc gtggtctggt cagttttatc aatgcaaggg tccttagaga
     1561 tcacaagatt tctggacaaa gcgcatttcg ggctgatctg gcgccgcaat ctcaaaatgc
     1621 ttgggggagc accatagaga cagatcgcgc agatttgtct gcaaaattag gttatgtcaa
     1681 tccggacatc acctggcaaa cagcggggat tcaaggggca tggagcttgc acaatcagaa
     1741 aagtagcttt gggttaaggc cttatgatat tgaccatcaa agtgcttatc tgaccttgct
     1801 gtacaattca ataataagcg atacacggca taagataaaa tttggtctca atggcactta
     1861 cgatcactat gaggagcgat tatctttaga tgctttaggc gtaaacgaaa ctcgattcaa
     1921 ccggacagag cgaggaattg gtgtctttac cgaatatgcc tataacgatt tggacaagct
     1981 tggggtgact ttgggacttc gtttggatca acataattta ttgggattgt ttttcacccc
     2041 gagattacac ctgaaatatc aaatactgcc ggaaacaacc ctacgggggt ctataggacg
     2101 gggtaagcgt attcctaata ttttttcaga gcatctgaat gtcttcacta caggccgcaa
     2161 tataattatt gaaaccggca gtgatcgccc tgaaaataac cctcaagaat caacgggaaa
     2221 tttttatggt ttacacccag agatcgcttg gaattatgga ttttcactgc aacaaaaaat
     2281 ttctgtcggc acaaggaaaa tgactttagg gtttgattat tacagaactg attttgagcg
     2341 tcaggttgtt gttgattggg aacaagtcgg atccgttcgc ttttataata atgtgggttc
     2401 gagttgggca cagtcttatc agtttgatct ctcgtatcga ccttgggatc tttttgatat
     2461 gcaattggcc tacaaatatt atgatttaag tactgccttt gattcagggg acaagcggcc
     2521 tattttgact ccagaacatc gtgtatttgc caatttggcc tatgaattaa agggaattcg
     2581 tccaaaccac ccattaaagt ttgatgtcac atttaattgg ttgggaaatc aacgattacc
     2641 agaattaccc caagtcgcag ccttatacgg ccagtccttt acaccgaccg tgatgacctt
     2701 aagtggtcag atcacaaaac aatggggccc ccattttgat ttgtattttg gtgttgagaa
     2761 tattggggat ttgcgacaag atcagccgat aattaatggt gatcagccct ttgattccga
     2821 ttttgatagc agtatggttn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnngacc agccctttga ttctgacttt
     2941 gatagcagca tggtttatgg accaattttt ggacgcatgt ggtatactgg gatgcgttat
     3001 aaattcgaat aatattgaaa cagaaaataa ttgaagaaca aacaaaaaca aatgaagaat
     3061 aatcaaaaaa caaaatcaat gaaaaattta ataacattat tagccgtgtt catggcgatg
     3121 aatctttcag cgcaagacaa aaatgctaaa gggagtttag aagtagatgg tgtctgtggt
     3181 atgtgtaagg cgcgtataga aaaagcggca atcaaattga ccggggtaaa atcagttcag
     3241 tggagtgttg aaagtcatga gcttaaagta atttatgacg ctcgaaaaac caatttggat
     3301 agcatagcca aacaggtagc caatgcgggc catgacacca aaaaatttac ggcgccagat
     3361 gctgcataca atgccgttaa cccttgttgt aaatatcgag atgannnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnncct tgttgtaaat atcgagatga ggaagtgata aaagcccatc
     3601 aataaaaaaa ccgcggcact tgtgccgcgg ttttaaggga ttctttttgg ttatgatgat
     3661 tacatcatgc caggcatgcc gccgccaccc attggaggca t
//
LOCUS       DPUP01000027            4140 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3200,
            whole genome shotgun sequence.
ACCESSION   DPUP01000027 DPUP01000000
VERSION     DPUP01000027.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4140)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4140)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4140
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..686)
                     /locus_tag="DHV98_00970"
     CDS             complement(<1..686)
                     /locus_tag="DHV98_00970"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04967.1"
                     /translation="MKKITLIFALFAFATSFGQRVQQRVPSLDRAAAGQQIQANESSD
                     QVQSLRTNEALFADYLQNAQRSVQTNQISVDQIVQRPGLATIVQDAADRGISQGNPVV
                     LRQSTIDRLEQAACTYANPSNAWENGYNYTGAFGAVENDFIVEAGVTFDFDQITYNTF
                     IAPGETVVSVDVEIKEDAGGVPGAVIASFAAVAPTSQTIIGGNFGFDGSEVVLSMPPV
                     SLSEGTYWVAL"
     gene            complement(816..1631)
                     /locus_tag="DHV98_00975"
     CDS             complement(816..1631)
                     /locus_tag="DHV98_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HCK04968.1"
                     /translation="MAYNLLKGKKGIIFGALDPNSIAWKTAERIHEEGGQFVLTNAPI
                     AMRMGQIDALAKATGAQIIPADATSLDDLNNLVSQSMEILGGKLDFVLHSIGMSVNVR
                     KGKHYTDQNYDWTHKGWDVSAGSFHKTMQVLYKQDAMNEWGSIVALSYMAAQRVFPDY
                     NDMADNKAYLESIARSFGYFFGRDKKVRVNTISQSPTPTTAGQGVKGFDGFISYAEKM
                     SPLGNATALDCANYTVAMFSDLTKRVTLQNLYNDGGFSNMGVSDAVMEYFTEE"
     gene            complement(1666..3327)
                     /gene="recN"
                     /locus_tag="DHV98_00980"
     CDS             complement(1666..3327)
                     /gene="recN"
                     /locus_tag="DHV98_00980"
                     /inference="COORDINATES: protein motif:HMM:TIGR00634"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HCK04969.1"
                     /translation="MIFVLKSLIIKNYALIEDLQASFDSGFTVITGETGAGKSILLGA
                     LDLVLGRRADTKVMRNPEQKCIVEAYFDLTAYSLQPLFDHLELDYDNTTILRREIWPS
                     GKSRAFVNDSPVSLNQVQELKKYLVEIHHQGDAHNLENEHFQINLLDTIAGLEGAIKK
                     YRNEFKLWQTAKEHYESLLGRRQKALQEEDYQKFVLEELNALNLDHLDQDQLEQSRNR
                     AQNQEQIQNVVQEVTALIGQDDLGLLDRLFQMRQRINSIGKVADEFMQLTHRIDGVRI
                     ELEDIQSTLDAQLDSTEHEPEELARIEQLLDELYRVQRKHGMHTVAELIDLRDDLSQR
                     LHDSGELDEAIIQLEQDLSAMKEGLEIQAEQLFERRLGVIPEIENRLINFFRELALPE
                     ARLNFKLERTALLNLHGGVRSSIWFSANKGIELRPIEKVASGGEMSRVTLSVKAVLAE
                     YQQLPTLIFDEIDTGISGDTALKMAEILLQISARGQLFCLTHLPQTAAKGRFHKRIFK
                     KTQGDKTQTFIQDLDASQRVLEIAQMIGGHELTDSAKAHARQLLN"
     gene            complement(3373..>4140)
                     /locus_tag="DHV98_00985"
     CDS             complement(3373..>4140)
                     /locus_tag="DHV98_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4835 domain-containing protein"
                     /protein_id="HCK04970.1"
                     /translation="RTLKDQLTELLNETQWTNRTFTNQERIDCNFTLILQSFESTTFS
                     GSLQVQSSRTIYGSTYDSPVYNYNDRQFVFEYSEFQPLVFNINNFDSNLMSILAYHVY
                     TIIGLDADTFSLNGGDPYFSQARQIVNTAASSNYQGWKAVDGTQSRYRFNDAVLSNVY
                     QDFRQAMYDYHRTGLDLMSSNLKNGKTGVRDAVILLKKVNDRRPNSFLMRTFFDAKSD
                     EIQQIFSDGPTIEITELVEILKRIAPTKSDNWNKIKL"
BASE COUNT         1172 a          910 c          841 g         1217 t
ORIGIN      
        1 agagcaaccc aataagttcc ttcacttaag gatactgggg gcatgctgag tacaacctca
       61 cttccgtcaa aaccaaagtt acctccaata attgtctgag atgtaggggc aactgccgcg
      121 aaagaagcaa taactgctcc tggaacgcca ccagcatctt ccttaatctc aacatcaaca
      181 ctaactacag tctcgccagg ggcgatgaaa gtattgtaag taatttgatc aaaatcaaaa
      241 gttactccag cctcaacaat aaaatcgttt tctactgcac cgaaggctcc tgtgtaatta
      301 tatccgtttt cccatgcgtt acttggattg gcataggtac atgcagcttg ctctaggcga
      361 tcaatagtgc tctgacgaag aacaactgga ttgccctgag agatacctct atcggcagcg
      421 tcttgaacaa tagtcgcaag acctgggcgc tgaacaattt gatcaacaga aatttgattc
      481 gtctgaactg acctttgagc attttgaaga tagtcagcaa acaaggcttc attcgtacga
      541 agactttgga cttgatcact actttcattt gcctgaattt gttgcccggc agctgccctg
      601 tctaaagagg gaacgcgctg ctgcacacgc tgaccgaaac tggtcgcgaa cgcaaacaaa
      661 gcgaaaatta aagtaatttt tttcataatt atcgatataa attagttatt agacgtaaat
      721 gtatttataa aattgaaatt aacaaagcgt tttcaatcgg aatttccact ctttccgatt
      781 aaaaacgcaa ttttttcgag caaagaaatc taaagctatt cctcggtaaa atattccatt
      841 accgcgtcac tgactcccat gttggaaaaa cctccgtcat tgtagagatt ttgcagggtc
      901 acacgtttgg tcaaatcact gaacatagcc actgtgtaat tcgcgcaatc taaggctgtc
      961 gcattaccca gcggagacat tttttcggca tatgaaataa acccgtcaaa accttttacc
     1021 ccttgtcctg ccgtagtcgg tgtgggagat tgagaaatag tgttcacgcg tactttttta
     1081 tctcgtccga aaaagtagcc aaagctccgg gctattgact cgagataggc cttattatcg
     1141 gccatgtcat tatagtcggg aaatacgcgc tgtgcggcca tgtaggacaa ggcgacgata
     1201 ctcccccact cattcattgc atcttgtttg taaagcactt gcatggtctt gtgaaaagag
     1261 cccgccgaaa catcccatcc tttgtgggtc caatcatagt tctgatccgt ataatgcttt
     1321 ccttttcgaa cattgaccga catcccaata gagtggagta caaaatcaag tttacctccg
     1381 agtatttcca tggattggct gaccaagtta tttaaatcgt cgagacttgt tgcatcagca
     1441 ggaataattt gagcgcctgt cgctttagcc agggcatcaa tttgtcccat acgcatagca
     1501 atcggggcat tggtcaaaac aaattgtcct ccttcttcgt gaatgcgttc tgctgttttc
     1561 caggcgatgg aattcggatc aagtgcacca aaaataatac ccttttttcc tttaagtaag
     1621 ttataggcca tgaattcaaa aattggttaa taaggcaaat ataactcaat tcaacaattg
     1681 acgggcatgt gcctttgcag aatctgtaag ttcatgaccg ccaatcattt gagcgatttc
     1741 taaaacacgc tgtgacgcat caagatcttg aatgaatgtc tgggttttat ccccttgagt
     1801 tttcttaaag atccgtttgt gaaaccgtcc ctttgctgct gtttgtggga gatgggtcag
     1861 gcaaaacaat tggccacggg cacttatttg aagtaaaatc tctgccatct ttagcgcagt
     1921 gtcgccggaa atacccgtgt cgatttcatc aaaaattaaa gtgggaagct gctgatattc
     1981 agccaaaacg gctttaactg ataaagttac gcggctcatt tctccgcccg aggctacttt
     2041 ttctatggga cgtagctcaa tgcctttatt ggctgaaaac catattgaag agcgtacccc
     2101 tccatgtaaa tttaatagag cggttcgctc aagtttaaaa ttcaaacggg cttcaggaag
     2161 ggcgagttct ctaaagaaat ttatcaaccg attttctatc tcgggaatca cccctaatcg
     2221 cctttcaaaa agttgttccg cttgtatctc tagcccctct ttcatggcgg ataaatcctg
     2281 ctctaattga attatggcct catcgagttc gccagaatca tgaagtcttt gagataaatc
     2341 atcgcgcaga tcaatgagtt cagcgaccgt gtgcatacca tgcttgcgtt gcacacgata
     2401 aagctcatcg agtaactgtt cgatccgtgc caactcttcg ggttcgtgct ccgttgaatc
     2461 caactgggcg tctaaagtcg attgaatatc ctcaagttca atgcgcactc cgtcaatccg
     2521 atgggtgagc tgcatgaatt catcagccac ttttccaatt gaattgatgc gctgacgcat
     2581 ttgaaaaagt cgatcgagta aaccaaggtc gtcctgtcct attaaggcag taacttcctg
     2641 aacaacattt tgtatttgtt cttgattttg tgccctattg cggctttgct ccaattgatc
     2701 ctgatcaagg tgatcaagat ttagggcatt gagttcctct aaaacgaatt tttgataatc
     2761 ctcttcttgt aacgcttttt gacggcgccc cagtaaactt tcataatgtt ctttggcggt
     2821 ttgccaaagc ttaaactcat tgcggtattt cttaatagcc ccttctaatc cggctatggt
     2881 gtccaaaaga tttatttgaa aatgctcatt ctccagatta tgggcgtccc cttgatgatg
     2941 aatttcgaca agatactttt tgagttcctg tacttgattg agactcaccg gagaatcatt
     3001 cacaaaagca cgcgacttgc cactgggcca aatctcgcgt cgtaaaatgg tagtgttatc
     3061 gtaatctaat tctaaatgat caaacaaggg ttgaagactg taggcagtga ggtcaaaata
     3121 agcctctacg atgcattttt gctctggatt tcgcatgacc ttagtgtctg cacgacgtcc
     3181 aagcaccaaa tcaagtgcac ccaaaagtat agactttcct gctccagttt caccagtgat
     3241 gacggtaaaa ccagaatcaa atgaggcctg aagatcctca attaatgcat aattttttat
     3301 gattaatgac ttgagcacaa aaatcaatta gggccaccca tgaatcaatg ttttatgagt
     3361 ttcggcctga ggttaaagtt ttattttatt ccaattgtca ctcttggtcg gggcaatacg
     3421 cttgagaatt tcgaccaatt ctgtgatttc aatggtcggt ccatctgaaa agatctgttg
     3481 aatttcatca gacttagcat caaaaaatgt ccgcattaaa aacgaattgg gtctgcgatc
     3541 gttgactttt ttaagaagaa ttaccgcatc gcgcacccct gtttttccat ttttaaggtt
     3601 agaggacatc aaatccaatc ccgttctatg ataatcatac atggcctgtc taaagtcttg
     3661 ataaacattg gacaacaccg cgtcattaaa tcggtaacga gattgcgttc catcgacggc
     3721 tttccacccc tgatagttac tcgaagcagc agtattcacg atttgtctcg cctgtgaaaa
     3781 atacggatct cctccattga gcgaaaaggt atcagcgtca agaccaataa tcgtatacac
     3841 atgataggcc agtatagaca tcaaattaga atcaaagttg ttgatgttga atacgagcgg
     3901 ttgaaattca gaatactcaa atacgaattg tcgatcgttg taattgtaaa cgggactgtc
     3961 ataggtagaa ccataaatgg tccgtgagga ttgtacttga agacttcctg aaaatgtggt
     4021 ggattcaaag ctttgaagaa tcaaggtgaa attacaatcg atacgctcct gattggtaaa
     4081 ggtcctgttg gtccattgag tttcattcaa tagctccgtt aattgatcct tcaaggtgcg
//
LOCUS       DPUP01000028            4522 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12501,
            whole genome shotgun sequence.
ACCESSION   DPUP01000028 DPUP01000000
VERSION     DPUP01000028.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4522)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4522)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4522
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            230..1036
                     /gene="cysQ"
                     /locus_tag="DHV98_00990"
     CDS             230..1036
                     /gene="cysQ"
                     /locus_tag="DHV98_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase"
                     /protein_id="HCK04971.1"
                     /translation="MTNLIDIAIKAALDAGSTILQVYDTDFDVDYKQDDSPLTIADQE
                     ANAVIESYLKQTDLPIISEETKTLAYAQRQNWTRCWIVDPLDGTKEFIKRNGEFTVNI
                     ALIENGVPIMGVIYAPVLGDLYYTQDDAAHKISIDSGSEQEALQIIDRLKSKAIKLQP
                     APWEDPIKVVGSRSHMNEATQDFVTQLQSNHKTQMVSKGSSLKFCLVAEGSAHVYPRF
                     APTMEWDTAAGQAICMAAGLQVTRQDTGEPLSYNKENLLNPYFLVQSDDR"
     gene            1026..1451
                     /locus_tag="DHV98_00995"
     CDS             1026..1451
                     /locus_tag="DHV98_00995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04972.1"
                     /translation="MTADSRVRHIAKAITWRLIGTLDTVLLSWLITGSGVTGLKIGFA
                     EVVTKMLLYYFHERAWFNFNLGPDGVTIESKKRHLLKTFTWRVVGTGDTMLLSWFISG
                     NPLTGVKIGMAEWITKMALYYVHERIWYRVDFGLPKRHN"
     gene            1465..2052
                     /gene="cysC"
                     /locus_tag="DHV98_01000"
     CDS             1465..2052
                     /gene="cysC"
                     /locus_tag="DHV98_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008896944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HCK04973.1"
                     /translation="MSHIVRQEYNISGTQRQAQMGHGALLVWFTGLSGSGKSTLANAV
                     EQKLHAAGVHTYTLDGDNVRHGLNKNLGFGPKDRTENIRRIAEVAHLMLDAGLVVLSA
                     FVSPYLKDRQAIKEVVGAEGFMEVFVDTPLEVCEQRDVKGLYAKARAGQIPDFTGISA
                     PYEAPEKPDFRIDTSVTGLDESANLLSELIMSRIK"
     gene            2084..2989
                     /locus_tag="DHV98_01005"
     CDS             2084..2989
                     /locus_tag="DHV98_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015754623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HCK04974.1"
                     /translation="MSKYYLNYLDELESEAIYILREVWAQFERPVILFSGGKDSILVT
                     HLAQKAFYPAKIPFALMHVDTGHNFPETIAFRDDLIKKLGAELIVGSVQESIDTGRVA
                     EERGKNATRNALQITTLLDAIEEHKVDCAIGGGRRDEEKARAKERFFSHRDDFGQWDP
                     KNQRPELWNLLNGRHFEGEHFRAFPISNWTEMDVWNYILRENIDIPSLYLAHEREVVW
                     RQDSWIPMSEHLILEGNEKVETKKIRFRTLGDITITGGIESEADTLEKIVQEVAAMKQ
                     TERGNRSDDKRSETAMEDRKRQGYF"
     gene            3112..>3731
                     /locus_tag="DHV98_01010"
     CDS             3112..>3731
                     /locus_tag="DHV98_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019037441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HCK04975.1"
                     /translation="MELEQNQLLRFTTAGSVDDGKSTLIGRLLYDSKSIFEDQLDAVA
                     STSKRKGMDGVDLALFTDGLRDEREQGITIDVAYRYFTTPKRKFIIADTPGHIQYTRN
                     MVTGASTANAALILVDARHGVIEQTKRHAFIASLLQIPHLIVCVNKMDLVNHEESYYQ
                     KVVQQMEEVASKLLIKDIRFIPISALNGDNVVNRSEHMTWYQGAPL"
     assembly_gap    3732..3899
                     /estimated_length=168
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3900..4521
                     /locus_tag="DHV98_01015"
     CDS             <3900..4521
                     /locus_tag="DHV98_01015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HCK04976.1"
                     /translation="LHISSDYNKVDARFPVQTVLRPQREGFIDYRGYAGRVASGIFRP
                     GDGVVVLPSGFSSTIKTLEQNGKEIPEAFAPMSIAMTLTDDIDISRGDMIVRENNQPE
                     ATQDFDAMICWLDSSPARPRAKYSILHCGNEQKAMIKEVVHQIDINTLNRAEGDPNLV
                     MNAIAKVQLRTTRPLMVDAYRENGQTGSFVLVDDATHNTVAAGMIL"
BASE COUNT         1229 a          988 c         1110 g         1027 t
ORIGIN      
        1 gcaatcatat cacgaatcat aataaacagg gtcaaattat cttaagtttc agacacaaaa
       61 ataaagagat ttatgctgat ttgggtgtta atgacctcat aattttgcca tcccaaacta
      121 ctagatccac cattatagtt tgcatggctc gtgttgttta acgattttat aacttttggc
      181 ttggaaaaat tggggccaaa ggcctatttt tgctcaaatt atcgatgact tgaccaattt
      241 aatcgacata gccattaaag cggccctaga tgctgggtcc actattttac aggtctacga
      301 cacggacttt gatgtggact acaaacaaga tgattcgccg ctaactattg ccgatcagga
      361 ggccaatgcc gtgatcgaat cttacctaaa gcaaactgac ctgcccatca tcagcgaaga
      421 gactaagacc ttggcctacg ctcagaggca gaattggacg cgctgctgga tagtggatcc
      481 actagatggc accaaagaat ttatcaagcg caacggggag tttaccgtga atatcgccct
      541 aattgaaaat ggtgtgccca tcatgggtgt catttacgct ccggtactcg gcgatctcta
      601 ttacacccag gatgatgcgg cccacaaaat ctcaatcgat tctggatctg agcaagaagc
      661 acttcagata atagaccgcc ttaaatctaa agccataaaa ctccagccag cgccttggga
      721 agatccgata aaagtagtgg gcagtcgctc tcacatgaat gaagccactc aagactttgt
      781 cacccagctt caaagcaacc ataagaccca aatggtgtct aaaggaagtt cgctgaagtt
      841 ttgtctggtg gccgaaggca gtgcccacgt gtatccgcgt tttgctccga ctatggagtg
      901 ggataccgct gcagggcaag cgatttgtat ggcggctggt ctccaggtga cccgtcaaga
      961 cacaggcgag cccctgagtt ataacaaaga aaatctgttg aacccttatt ttttagtcca
     1021 aagtgatgac cgctgattct cgggtacgcc atattgccaa agccatcact tggcgcttga
     1081 tcgggacgct cgatacagtg ctgctttcgt ggctgattac cgggagtggg gtaacaggcc
     1141 taaaaatcgg gtttgctgaa gtagtgacca aaatgctctt gtattatttt cacgagcgcg
     1201 cctggtttaa ctttaatcta ggccctgatg gggttacgat agagagtaaa aaaagacacc
     1261 tgttaaaaac atttacctgg cgtgtggtgg gtacaggaga caccatgctt ttgtcttggt
     1321 ttatctccgg aaatccgctg actggcgtta aaataggtat ggctgaatgg attaccaaaa
     1381 tggccttgta ctacgtgcat gagcgcatct ggtatcgtgt agattttgga ttaccaaaac
     1441 gccacaacta atgaaaagta actcatgagc catattgtca gacaagaata caacatcagc
     1501 ggaacccagc gccaagcgca aatgggacac ggggctctgc tggtatggtt cacggggctt
     1561 tcaggctctg gaaagtccac tctggctaat gctgtggaac aaaagctgca tgcggcgggg
     1621 gtgcatacct acaccctcga tggggataat gtgcgccatg gtttaaacaa aaacttaggg
     1681 tttggcccaa aggaccgcac cgaaaatatt cgccgtattg ccgaagtggc ccatctcatg
     1741 ctcgatgcgg ggctggtagt gctctcagct tttgtctcgc cttatcttaa agatcgacaa
     1801 gcgattaaag aggtggtagg ggccgaaggt tttatggaag tgtttgtgga cacgccctta
     1861 gaggtctgtg agcagcgtga tgtgaaaggc ctttatgcca aagcgcgggc tggtcaaatc
     1921 ccggacttta ccggcatatc ggctccgtat gaggcgcccg aaaaaccaga ttttcgtatc
     1981 gacacctcgg ttacgggact ggatgagagc gcgaatctgc tctctgagtt gatcatgagt
     2041 aggataaaat aaaacagaat aaaaaaatag tcaaagaaat aacatgagta agtactattt
     2101 aaactactta gatgaattag aatctgaagc gatatatatc ctgcgtgaag tatgggctca
     2161 atttgaacgt ccagtcattt tgttttctgg gggtaaggac tctattttgg tgacgcattt
     2221 ggcgcaaaaa gcgttttatc cggccaaaat accctttgcg ctgatgcacg tggatacagg
     2281 gcataatttc ccggagacca ttgcctttag agatgatctg attaaaaaac taggcgcgga
     2341 gctgattgta ggctctgtac aagagtctat cgatacgggc cgtgtggccg aagagcgcgg
     2401 taaaaatgcc acgcgtaacg cactccagat cacaacactg ctcgatgcca tagaagaaca
     2461 caaagtcgac tgcgctatag gcgggggacg ccgcgatgaa gaaaaagccc gcgctaagga
     2521 gcgatttttc tcgcaccgcg atgattttgg gcagtgggat cctaaaaacc aacgccccga
     2581 gctttggaac ttgctcaatg ggcgccactt tgagggggaa catttccgcg catttccgat
     2641 cagcaactgg accgagatgg atgtttggaa ttatatctta agagaaaaca ttgatatccc
     2701 gtcgctttac ttggcccatg agcgtgaggt cgtttggcgt caagattcat ggatcccgat
     2761 gtcggagcat ctgattttgg agggcaacga aaaagtagag accaaaaaaa tacgctttcg
     2821 aacccttggg gacattacca taacgggcgg tatcgaaagc gaggccgata ccctagaaaa
     2881 aattgtacag gaagtcgctg ctatgaagca aaccgagcgc ggcaaccgca gtgatgataa
     2941 gcgcagtgaa acagccatgg aggatcgcaa acgtcagggt tatttttaat cccggtgaac
     3001 caaatgcgac ggcgagcgcg atcggtccgc ggagcaataa aggaatacaa aaaataaaag
     3061 cgtgccgcaa tattatttaa gcggcgcgaa acaaaagaat aagcgaaata aatggaactg
     3121 gaacaaaatc agttattaag atttacaaca gcgggaagcg ttgacgacgg taaaagtact
     3181 ttgatcgggc gcttattgta cgactcaaag tcaatctttg aagaccagct cgatgccgtg
     3241 gcctcgacca gcaagcgcaa aggtatggac ggggtggatt tggccttgtt tacggatggg
     3301 ctaagagacg agcgcgagca aggcatcacc atagacgtgg cctaccgcta ttttaccacg
     3361 cccaaacgca agtttattat cgccgatacc ccgggacaca tacagtacac ccgcaatatg
     3421 gtcacgggtg cctctacggc caatgcggcc cttattctgg tggatgcccg tcatggggtg
     3481 atcgagcaaa ccaaacgcca tgcgtttatt gcctcactgc tccaaatccc gcatcttata
     3541 gtctgcgtga acaagatgga cctagtgaat cacgaggaat cgtattacca aaaagtggtg
     3601 cagcaaatgg aagaagtggc ctcaaagcta ctgatcaaag acatccggtt tattccgatc
     3661 agcgcgctta acggggacaa tgtggtgaat cgcagcgagc acatgacctg gtatcaaggg
     3721 gcgccgctat tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc
     3901 ttgcatattt cgagtgatta caacaaagta gatgcccgtt ttccggtgca gacggtgctc
     3961 cgaccacagc gcgagggctt tattgattac cgcggctatg cggggcgtgt ggccagcggt
     4021 atttttcgcc caggagatgg ggtcgtggtg ttgccttctg gatttagctc gaccatcaaa
     4081 accttggaac aaaacggcaa agaaatacca gaggcctttg cgccgatgtc catagcgatg
     4141 accctgaccg atgacataga catctcaaga ggggacatga ttgtacgcga gaacaatcaa
     4201 cccgaagcga ctcaagattt tgacgccatg atctgctggt tagattccag tccggctcgc
     4261 ccgcgagcca aatacagcat tttgcattgt ggtaacgagc aaaaggccat gatcaaagag
     4321 gtggtccatc aaatcgacat caatacccta aaccgcgcag aaggcgaccc taatctggta
     4381 atgaatgcta ttgccaaagt acagttgcgc accacgcgcc cgcttatggt ggatgcttat
     4441 agagaaaacg gacaaaccgg aagttttgtg ctggtggatg atgccaccca caatactgtt
     4501 gcagcaggta tgattttata ac
//
LOCUS       DPUP01000029            9431 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_20339,
            whole genome shotgun sequence.
ACCESSION   DPUP01000029 DPUP01000000
VERSION     DPUP01000029.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9431)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9431)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9431
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>180
                     /locus_tag="DHV98_01020"
     CDS             <1..>180
                     /locus_tag="DHV98_01020"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04977.1"
                     /translation="GIYWSGLSGLLLLGGFWMTLGLLCSILTSNALVAFMLTLLLGAG
                     SFMVPGQYGLEGIYL"
     assembly_gap    181..365
                     /estimated_length=185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <366..2207
                     /locus_tag="DHV98_01025"
     CDS             <366..2207
                     /locus_tag="DHV98_01025"
                     /inference="COORDINATES: protein motif:HMM:PF09822.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04978.1"
                     /translation="GIYLEFTAGLWSGAGSLYLLSLGFILLLLSRYFLGRYGGNKQPW
                     HGLLKPVFGGLLIAFLGLNYLPKWDLTQDRRFTLSEPTRDVLAGLDQPIFVDVLLAGD
                     LPQSFQRLTQETQTLLNRYALENELLISTLDPTQMAGTDPQLLDQLAEFGIQASQVTV
                     KRNARQESVLLYPYALVTYGGRTVSVPLLKNTLGAEMQERITESVRHLEYAFTDALIQ
                     LSRPKLKKIAIMRGNEEASDQNLTGFIEAIKPYYFVGAFTLDSVAKNPTGTLEALKGY
                     DLIVLADPKEAFTPEEKLVLDQFIMSGGRSLWLVDGARVPELDESGQTLAMGQSLELT
                     DLFFAYGLRINPNLVLDVFSAPITLATGEVAGAYTQFPWWFSPMAQDSGTHPIMAHVD
                     GVKLDYVSSIDTLPSGPKKTVLLQSSPRSKILGLPYVIDLNREIDTQIQMIQEAGADN
                     TDSSRNNLKSDQPFGLAAFNENALPMAVLLEGNFKSAFANRVLPFDLKNPSKESPSNK
                     MVVIADGAVIQNKVQRGQALPLGYDSWTKAQFGNKEFLLNTVNYLLGDSGLINIRNKQ
                     INVPFLDPERTPQGRSGFLALNLVLPLLIIGIFGGLLQWFRHRQYAR"
     gene            2306..3424
                     /gene="dnaN"
                     /locus_tag="DHV98_01030"
     CDS             2306..3424
                     /gene="dnaN"
                     /locus_tag="DHV98_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008616076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HCK04979.1"
                     /translation="MKFIVSSSYLLKQLQVLGGIINNNNTLPILDHFLFDLSGSALKV
                     SASDLETTVVAQLNVESDSTGQICVPARLLLDTLKTFPEQPLTFTVEDNHTIEISSNS
                     GKYALAYADGGDFPSAVTLKEPSTASVQGDVLATAISKTIFAAGNDDLRPVMSGVFFQ
                     LASDGLIFVATDAHKLVKYARTDATAPQAAEFIMPKKPLNLLKGILAGTEEAVTIEYN
                     ESNAKFSFDNMELICRLVDGKYPNYEAVIPKENPNKLTIDRNLFLNSIKRVSIFSNKT
                     THQIRLRIAGAELNISAEDIDYSNKAEERLTCDYQGDDIQIGFNSRFLVEMLSNLTCD
                     AVTLELSMPNRAGILTPSDGLDEGEAVTMLVMPVMLNQ"
     gene            complement(3441..3803)
                     /locus_tag="DHV98_01035"
     CDS             complement(3441..3803)
                     /locus_tag="DHV98_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008639331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HCK04980.1"
                     /translation="MYAVDPSGKKIDTQMLMITHLTQLLTCITGFGGLIVPLIIWLTQ
                     KDKIADMDLHGKSIINFQLSLIVWAILSIPLILLLGLGVVMLILIGLVSIIFPVLNAI
                     KASNGEAPEYRWSIRFIK"
     gene            3936..5342
                     /locus_tag="DHV98_01040"
                     /pseudo
     CDS             3936..5342
                     /locus_tag="DHV98_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709788.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
     assembly_gap    4240..4281
                     /estimated_length=42
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5355..7253
                     /locus_tag="DHV98_01045"
     CDS             5355..7253
                     /locus_tag="DHV98_01045"
                     /inference="COORDINATES: protein motif:HMM:PF01757.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04981.1"
                     /translation="MKTNQNYRADLNGLRAIAVLLVVLFHLDIPLFKGGFLGVDVFFV
                     LSGYFISRNIIHDLENGLFSFTRFYQKRLKRLFPALIVTLLLTLLAGYFMLSANLFVR
                     LAESTQYAAFSASNFFFFFESGYFDTASKLKPLLHMWSLSVEEQFYLLWPLLLFVSFK
                     YFKNIRFIALSLLFVVSLIFAELFISEHTSAVFFMLPFRVFEFGFGYWAISLEKKIKT
                     YGNGLLEALFVSGLGLIIFSSCFFDDRTLMPGFISLWAMAGTTLVIVAGNARFSKVLL
                     GNIILEYIGKASYSIYLVHWPLIVFYKQWTNDELMLGDISVLFLSSLFLGFLFWYFIE
                     NTFRYKKPKNKSFDIVWIYVPLSLFLIWSIAQMVRYNDGFPKEIEMIYSLDKEQIDLN
                     KTRYFKKYQGKNFQASEENHSNVVIMGNSHSIDLIYMLKENGFQGNITRFNSLGKCYN
                     FGASTNSKNDAETCQTQLDKNLKDPAWMNAELILLHDNWPDYDFNGLSKVIQRIRSVS
                     GATIYIIGPKMTYNKDIPDIIAQSEKKSPKEINEYASSYAKSNLKFRINDSIIKFINS
                     QAQDASISFIDLLSLQGGTDLNEFEIVDPEKPEILYFDFNHFTKEGATRLGARLKEAH
                     PYLFTLNQ"
     gene            complement(7403..8011)
                     /locus_tag="DHV98_01050"
     CDS             complement(7403..8011)
                     /locus_tag="DHV98_01050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family transcriptional regulator"
                     /protein_id="HCK04982.1"
                     /translation="MNEIITTILFLFAVIDPLGSVPVYLEATKQLSKRDQKRVAFRAP
                     LIAFVVLLIFIVVGQIVLDGMEVSLDAFQISGGVILFLFALTMIFGEGKPESEKHLIT
                     DYKHVTIFPVAIPSIASPGAIMAVVLMTDNNLYSFEQQTITTLLVLVVIVLTALLLLA
                     ANKVKDAVGEYGITIVSKIMGLILASYAVQSILAGLKDFFGV"
     gene            complement(8272..>9071)
                     /locus_tag="DHV98_01055"
     CDS             complement(8272..>9071)
                     /locus_tag="DHV98_01055"
                     /inference="COORDINATES: protein
                     motif:HMM:PF14312.4,HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04983.1"
                     /translation="GYTFAKAHLFEVATGNQLMELQPDILNLNGDVGGHFADALAIDN
                     GLVAIGAPTRSVVWDNSGAAYVFNVTSGEQLHFIAPDDLWDRDYCGISISIDNQIVAI
                     GAEGDDDNAWFSGAAYLYDAQSGNQIDKLLASDGAEFDTFGNAIAINAGVVVVGAKGD
                     TSDHFGAAYVFDGITLGSADEIKNEFTLSPNPASNRVSIDHLALEGEIVAVKIHNSLG
                     QLVGHFDQDYFKGAEQWSLDVSSYESGIYFVSLQKSDRLEVKKLLIE"
     assembly_gap    9072..9231
                     /estimated_length=160
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9232..>9431)
                     /locus_tag="DHV98_01060"
     CDS             complement(<9232..>9431)
                     /locus_tag="DHV98_01060"
                     /inference="COORDINATES: protein motif:HMM:PF14312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04984.1"
                     /translation="DEFGNAIDLDNGIVAVGAWRSDDYGDGSGAAYLFEASTGNQLQK
                     LLPPSGNNYQTFGVSIAIDDGI"
BASE COUNT         2477 a         1957 c         2043 g         2567 t
ORIGIN      
        1 gggtatttat tggagcggat taagcggctt gctgcttctg ggtggatttt ggatgacttt
       61 agggcttttg tgctccatcc tgacgtcgaa tgccttagtg gcctttatgc tgacgttgtt
      121 gctaggagcg ggttcattta tggttccggg acaatatggt ctagagggca tttatttgga
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnggcat ttatttggaa ttcactgcgg ggctttggtc tggggcggga tctctgtatt
      421 tgttgagtct aggatttata ttattgctgc tgagtcgcta ttttttaggg cgttacggcg
      481 gaaataaaca gccttggcat ggtcttttaa agcccgtatt tggcgggctg ctcatcgctt
      541 ttttaggatt gaattaccta ccaaagtggg acctaacgca agaccgacga tttacccttt
      601 ctgaacccac ccgtgatgtt ttagcggggt tggatcagcc tatttttgtc gatgttttgt
      661 tagcggggga cctgccgcag tcctttcagc gcttgacaca ggagacccaa acgctgctga
      721 atcgatacgc tttagaaaat gaacttttaa tctccacgct cgatccgacc caaatggcgg
      781 gcactgatcc gcaactatta gatcagctcg cagaatttgg gatacaggcc agtcaagtca
      841 ccgtaaagcg taatgcgcgt caagaatcag tattgctcta tccttatgcc ctggtgacct
      901 atgggggccg cacggtatcg gtgcccttat taaaaaatac gctcggcgct gaaatgcagg
      961 agcgcatcac agaatcggtg cgccatttgg aatatgcctt taccgatgcc ctgattcagc
     1021 tgagccgacc gaaactcaag aaaatcgcca taatgcgcgg taatgaagag gcttcggatc
     1081 aaaatctaac gggatttatt gaggccataa agccctatta ttttgtcggg gcgtttaccc
     1141 tagatagtgt ggccaaaaat cctacaggga ccctagaagc actcaaagga tatgatttga
     1201 tcgtccttgc tgatcctaaa gaagccttta cgccagagga aaaacttgtg ctcgatcagt
     1261 ttattatgtc tggaggccga agtttatggc tagtcgatgg ggctagggtg cctgaactgg
     1321 atgaatccgg acaaaccctg gccatgggtc aatcccttga actcacagat ttattttttg
     1381 cctatggcct gcgcattaat ccaaaccttg ttttggatgt gttctctgcg cccattactt
     1441 tggccacggg tgaagtcgcc ggagcgtata ctcagtttcc gtggtggttt agcccaatgg
     1501 cacaagactc gggaacccat cccattatgg ctcatgtcga tggggtaaaa ctcgattatg
     1561 tgagcagtat agacactttg ccttcagggc caaaaaaaac ggtgctgctg cagagttccc
     1621 cgcgcagtaa aatcttggga ctgccttatg tgattgattt gaatcgagag atagacaccc
     1681 aaattcaaat gattcaagag gcgggtgcgg acaatacgga ctctagcaga aacaacctaa
     1741 agtctgacca gccctttggt ctggcagcgt ttaatgaaaa cgcgctccct atggcggtat
     1801 tactagaagg taattttaag tctgcttttg ccaatcgggt cttgcctttt gatctaaaaa
     1861 atccgagcaa ggaaagtcct tccaataaaa tggtggtgat tgccgatggc gcggtgattc
     1921 aaaacaaagt ccaacgcggt caagccttgc ctttgggtta tgattcttgg accaaagcac
     1981 aatttggaaa taaagaattt ttactcaata cagtcaatta tcttttgggc gactctggac
     2041 ttataaacat ccgcaacaag caaatcaatg tgcccttttt agacccggaa cgtacccctc
     2101 aagggcgcag tggcttttta gccttgaatt tagtgcttcc gctgctcatt attggaattt
     2161 ttggcgggct cctgcagtgg ttccgtcatc gccaatacgc gcgttagttg ttgataagtt
     2221 tgttttccct gccgaggcat ttcaaatata tttgtgtgta gactaaaaat ggccttttac
     2281 ggccattgga aagaccattt gacttatgaa atttatcgtt agtagctctt atttactcaa
     2341 acaattacaa gtgctgggag gcatcattaa caataacaac acccttccca tactggacca
     2401 ttttttattc gatttaagcg gctcagccct taaagtctcg gcttctgatt tggaaaccac
     2461 tgttgtggct cagttaaatg tcgaaagcga ctcaaccggt cagatctgtg tccctgcgcg
     2521 tttgcttttg gatacgctaa aaacctttcc tgagcaaccc cttaccttta ctgttgagga
     2581 taaccatacc atagaaatca gttcaaatag cggaaaatac gccttggcct atgccgatgg
     2641 cggtgatttc ccctctgccg tgaccttaaa ggaacccagt actgcttcgg ttcagggcga
     2701 tgtgctcgcg accgcgatta gtaaaactat ttttgccgca ggaaacgatg acttgcgtcc
     2761 ggtgatgagc ggggtatttt tccagctggc cagcgacgga ctgatctttg tggccaccga
     2821 tgcccacaaa cttgtcaaat acgccagaac cgatgccaca gcgcctcagg cggctgaatt
     2881 cattatgcct aagaagcctt tgaatttact taaaggaatt ttggccggca ccgaagaagc
     2941 agtgaccata gaatacaacg agagcaacgc aaagttttct tttgacaata tggaactgat
     3001 ttgccgactg gtggatggaa aatatccgaa ttacgaagcg gtgatcccta aagaaaatcc
     3061 aaacaaactg accatagacc gcaacctgtt tctcaacagc atcaagcggg tgagcatctt
     3121 tagtaataaa acgacccacc agatccgttt gcgtatcgcg ggcgcggagc ttaacatctc
     3181 tgccgaggac atcgattaca gcaataaggc cgaggagcgt ttgacctgtg attatcaggg
     3241 cgacgatatt cagattgggt ttaacagccg cttcttagtg gagatgctca gtaacctgac
     3301 ttgcgatgcg gtgactttgg agctgtctat gcccaatcgc gcgggaatat tgaccccaag
     3361 tgatggtttg gatgaaggcg aagccgtgac catgctggtc atgccggtga tgctgaatca
     3421 gtagttcaga cttaaatttt ctacttaata aatctgatgg accagcggta ttcgggggct
     3481 tcaccgtttg aggctttgat ggcgttgagc accgggaaaa tgatcgaaac gaggccgatc
     3541 aaaatcagca tgacgacccc aagcccgagc agcaggatta atggaatgct caaaatcgcc
     3601 cagacaatca gcgacaactg aaagttaatg atgcttttgc cgtgcaggtc catgtccgcg
     3661 attttatctt tttgggtgag ccaaataatc aggggcacga tgagcccgcc aaagcccgta
     3721 atgcaggtca aaagctgggt taaatgcgta atcatgagca tttgtgtgtc gattttcttt
     3781 ccggaggggt ctactgcgta cattgaatac aagttttgtt cggttgctta tcgccttgtt
     3841 actcgtgctt aatcacgatg tgcaaagcct tcaaatttat taaaatgatg ggctgtgtcc
     3901 accacttggg gtgaattatt tctatttttg ccccaatgaa tcaccaagat accataattg
     3961 ctttggctac ggccccgggg agcggcgcga ttgccgttat caggctttca gggccacagg
     4021 ccattgagct tgccagtgag gcgctgcacc tagtcagtgg taaggtgttt aaagatcagc
     4081 cctgtcatac ggtacatctg gccgatttaa agcagggtga gcgtttgatt gatcaagtgc
     4141 ttgccacaat ttttgtcggg cccaagagtt ataccggcga tgatgtggtg gaactttctt
     4201 gtcatggcag cccttttatt caacagcaga tcatcaagan nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn ngaatggccc agcccggcga gtttaccctt agggcgttct
     4321 tgagtggtaa aatggacctg agtcaagccg aagcggtcgc agacctaatt gcctctgact
     4381 ctgccgcggc ccatgaactg gccctgaatc aaatgcgcgg aggcttttcg catgcgattg
     4441 aaggcttgcg tcaagaactg ctgcactttg cctccatgat cgagttagaa ctcgattttg
     4501 ccgaagaaga tgtggccttt gccgatcgcg gtgaattcat caaactggtt caaaaaatca
     4561 cccaagaggt caaactcctt atcgactcat ttaacttagg tcaagtcatc aaagacgggg
     4621 tgcctgtggc catagtcggg gcgccaaatg tgggtaaatc cacgctgctg aatgctctgg
     4681 taaacgaaga acgagctttg gtgagcgcta tcgccgggac gacgcgcgat actgtagagg
     4741 atgaattgcg tctgggtggg gtgctgtttc gccttattga taccgcgggg attcgcgaaa
     4801 cggccgatgt ggtcgaaggc atgggtatcg agcgtaccta taagaccatg gatacggcca
     4861 aagtggtcat aagactttgg tcctctgaca cagatctgca gacgatttcc gaggattggg
     4921 ctgcgctcaa gcaaagccat agcgataaaa aatgtatcgg gatcgtcaat aaaacggatc
     4981 ttctgaaggg agaacaggcc gatcgacttg cgcagcttac taaaaatcag ccggatctcc
     5041 tgcaaatgag cgccaaaaac aaagcaggca tcccgcaact caagaccgcc ctactcgatt
     5101 tagtagacac cggtgcccta ggtcaaagcg ctgtagtgag taacagtcgt cattatcacg
     5161 ctttggtacg tgccctggaa gccttggata aggttcaaga agggattgac gcagagctca
     5221 gtggtgatct actggcgata gacctgcgcg ctgccctatt tgctttaggt gaaatcactg
     5281 gtgccatcac aaacgacgac atgctcgggc atatttttgc gaacttttgt atcggaaagt
     5341 aattcgaata ataaatgaaa acaaaccaaa attaccgtgc tgatttgaat ggtcttagag
     5401 ctatcgcagt gctgcttgtg gttctttttc atttagacat tcctttgttc aaaggaggtt
     5461 ttttaggcgt tgatgtattt tttgttttat caggctattt tatttctaga aatattattc
     5521 atgatctcga aaatggccta tttagtttta cacgattcta tcaaaaacga cttaaacgac
     5581 tatttcctgc actcatagtt accttattat tgaccttgct ggccggatat tttatgctct
     5641 cggccaatct ttttgtgaga ttagctgaaa gtactcaata tgctgcattt tctgcatcta
     5701 acttcttttt cttttttgag tcaggttact ttgatacggc ttcaaaacta aagccattgc
     5761 ttcatatgtg gtcgctttca gttgaggaac aattttattt gctctggcct cttttacttt
     5821 ttgtgtcttt taaatatttt aaaaacataa gatttattgc gctgtcattg ttgtttgtgg
     5881 tttcattaat ttttgctgaa ttattcatta gcgaacacac gagcgccgtg ttttttatgt
     5941 tgccgtttag agtctttgaa tttggatttg gctattgggc aatctctctg gagaaaaaaa
     6001 ttaaaaccta tgggaatgga ctattggaag ctttatttgt ttctggatta ggactcataa
     6061 tatttagttc ttgttttttt gatgaccgta cattgatgcc gggatttatt tctctttggg
     6121 caatggcagg gacaacattg gttattgtag ccggtaacgc ccgtttttca aaagtcttgt
     6181 tgggtaatat aattttagaa tacatcggaa aggcatctta ttcgatctat ctcgttcact
     6241 ggccattaat cgtattttat aaacagtgga ctaatgacga acttatgctt ggagatatct
     6301 ctgttttatt tctttcgtca ttgtttctcg gcttcttgtt ctggtacttt attgaaaata
     6361 ctttccgata taaaaaaccc aaaaacaaat cttttgatat agtctggatt tatgttccgt
     6421 tatccttgtt cctcatttgg tccatagcac agatggttcg ttataatgat ggttttccaa
     6481 aggaaataga gatgatctat agtttggaca aagaacaaat cgacctgaac aaaacgcgtt
     6541 attttaaaaa atatcaagga aaaaattttc aagcaagtga ggaaaatcat tcgaacgttg
     6601 tgattatggg taattcgcac agcattgatt taatttacat gcttaaagaa aacggttttc
     6661 agggtaatat aacaagattt aatagccttg gtaagtgtta taattttgga gcatcaacga
     6721 attctaaaaa cgacgctgag acttgtcaga cacaacttga caaaaatcta aaagatcctg
     6781 cttggatgaa tgcagagtta attttgcttc acgacaattg gcctgattat gattttaatg
     6841 gattatccaa agtaattcaa agaatacgtt ctgtatcagg ggcaacaatt tacattattg
     6901 gcccaaaaat gacctacaat aaggatatac cagacattat tgcacaatca gaaaaaaaat
     6961 caccgaaaga aataaatgaa tacgctagca gttatgcgaa gtctaatttg aaatttagaa
     7021 taaatgattc aattattaag tttattaatt cacaagctca agacgcttca atctcgttta
     7081 tagatttact atctcttcaa ggaggcactg atttaaatga atttgaaatc gttgatcctg
     7141 aaaaacctga aatactctat tttgatttta atcattttac taaagagggc gcaacacggc
     7201 ttggcgctcg attaaaggag gcgcatccat atttatttac tttgaaccag taaaatagtc
     7261 atcaggtcaa tcatcacaaa cgacgacatg ctcgggcata tttttgcgaa cttttgtatc
     7321 ggaaagtaaa tggctgccga acggatttca gagaatgaag aatcccaata tttgacctac
     7381 tatcgcgcta agtttgcaat aactaaactc caaaaaagtc tttcaagccc gccaaaatac
     7441 tttgaacggc gtaagacgcg aggatcagtc ccatgatttt actgactatg gtgatcccat
     7501 actcccccac agcatctttg actttattgg ccgccaagag cagtaaagcg gtcagtacaa
     7561 taacgaccag caccagtaaa gtggtaattg tctgctgctc aaaactgtag agattattgt
     7621 cggtcatcag caccacggcc ataatggcgc ccggtgatgc aatagaagga atagccaccg
     7681 gaaatattgt cacgtgcttg taatcggtaa tgaggtgctt ttcggattca ggtttaccct
     7741 caccgaaaat catggttagc gcgaataaaa acaaaattac tccgccagag atctgaaagg
     7801 cgtcaagtga aacttccatc ccatcgagaa cgatttggcc caccacaata aaaataagca
     7861 gtactacaaa ggcgattaat ggagcgcgaa aagccactct tttttggtct cgtttgctca
     7921 attgtttggt ggcctcgaga tacaccggta ccgaacccag agggtcgatt acagcgaata
     7981 aaaataagat ggtggtgatg atttcgttca ttgtgttata atttattggt ctaagtgtta
     8041 attaggaggc gagaatatcg cccatgttaa gttaagattt tataagattc gcgcaatacc
     8101 ctaaatcaaa aaaccgcctc gaattgcttc aagacggttt gatgtttatg aaaagataac
     8161 cactactaac tgatgtaaaa ttagtggttc gcggtatctc ctcagattat caaggaatta
     8221 aaaagtctaa caaaagatta atatcgctgg tcgcgatatt tctgtccgat gtcattcaat
     8281 caggagcttc ttaacttcaa ggcgatcact cttttgcaaa ctcacaaaat aaatccctga
     8341 ctcatagctt gagacgtcaa gtgaccactg ctcagcccct ttgaaatagt cctgatcaaa
     8401 atgacccact aattgcccca gactgttgtg aatttttaca gccacgatct caccctctag
     8461 cgctaaatga tcaatgctga ctcgattaga ggctggattt ggtgataagg tgaactcgtt
     8521 ttttatttca tctgcactcc ctaaagttat accatcaaag acataggccg caccaaaatg
     8581 gtccgaagta tcaccctttg cacccacgac aaccacccct gcattaatag caatggcatt
     8641 gccaaaggtg tcaaattctg cgccatcact ggccaaaagt ttgtcaattt gatttcccga
     8701 ctgagcatca tagagatagg cggccccgga aaaccaggcg ttgtcgtcat caccttctgc
     8761 tcctatggcc acgatttgat tatcaatcga aatggagatc ccacagtagt ctcggtccca
     8821 aaggtcatca ggtgcaataa agtggagttg ctcaccgctt gtcacattaa aaacataagc
     8881 cgcaccagaa ttatcccaga ccacacttct ggtcggcgct cctattgcca ctaaaccatt
     8941 atcgatggcc aaagcatcgg caaaatgacc cccgacatca ccgtttaaat tcaagatgtc
     9001 gggttgtaat tccatgagct gatttcctgt agcgacctca aacaaatggg ctttagcaaa
     9061 ggtatacccc cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nctatcccgt
     9241 catcaatggc gatggacacc ccaaaagtct gatagttatt gcccgagggc ggcaaaagtt
     9301 tttgcagttg attgccagta gaggcctcaa aaagataggc cgctccggaa ccatcaccat
     9361 aatcatccga gcgccaagca cctacagcca cgatgccatt atctaggtcg atggcattac
     9421 cgaattcatc c
//
LOCUS       DPUP01000030            3045 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_21037,
            whole genome shotgun sequence.
ACCESSION   DPUP01000030 DPUP01000000
VERSION     DPUP01000030.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3045)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3045)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3045
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..235)
                     /locus_tag="DHV98_01065"
     CDS             complement(<1..235)
                     /locus_tag="DHV98_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009390036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S metabolism protein SufE"
                     /protein_id="HCK04985.1"
                     /translation="MITEAQQEIIEEFTLFDDWMDKYEHLIGLGKTLPLIDPQFKTDQ
                     YIIKGCQSKVWLRAEQQDGRVYFWADSDAIITKG"
     gene            complement(232..693)
                     /locus_tag="DHV98_01070"
     CDS             complement(232..693)
                     /locus_tag="DHV98_01070"
                     /inference="COORDINATES: protein motif:HMM:PF03724.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04986.1"
                     /translation="MRGLHFTTRLDSLNTMLFGAFIVIGLMGSCGGSKTLKESQIPAP
                     SGLYHVIAIEEMSLSETQPTLNFDLEQNRLTGNAGCNQFGGRLILRQENISVDSLMAT
                     KMYCSDAVMAIEYKFLRHIGRPMQWTQNGDTLSLSADESPYIMIAVKTKDQ"
     gene            complement(704..1921)
                     /locus_tag="DHV98_01075"
     CDS             complement(704..1921)
                     /locus_tag="DHV98_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HCK04987.1"
                     /translation="MGFAIDKIRADFPILLRQVHNKPLIYFDNAATSQKPQQVIDALV
                     HYYTYQNANIHRGVHALSQEATDAYERARDLVKTFFNARLREEIIFTAGTTHSINLVA
                     HGFRSWLQPKDEIIVGQAEHHSNIVPWQMACALTGAVLKVLPIDENGQLQLETLKSLL
                     GPQTKLVVVNHVSNALGTINPIETIIEMARGHGVQVLVDGAQASSHISVDVQALDVDY
                     YITSAHKMCGPTGVGMLYGKKELLEALPPYQGGGEMIKEVYFEGTTYAGLPHKFEAGT
                     PNIAGGIGFGAAIEYLNTIGLEEIAAYEHELLMHATQGLKQIEGLKIYGDITHKTAVV
                     SFNIGQLHPYDVGTLLDRMGIAVRTGQHCTQPVMDFYGIPGTVRASFAFYNTKEEIDI
                     MIKGVQRAVNMLQ"
     gene            complement(1927..>2166)
                     /locus_tag="DHV98_01080"
     CDS             complement(1927..>2166)
                     /locus_tag="DHV98_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCK04988.1"
                     /translation="QLEIFADDVKCSHGCTIGQLDQDALFYMRARGIAEKEAKALLMY
                     AFANNVLESVRIPELKKRINKLVALKMNVQIGFDL"
     assembly_gap    2167..2285
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2286..>2631)
                     /locus_tag="DHV98_01085"
     CDS             complement(<2286..>2631)
                     /locus_tag="DHV98_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007809170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCK04989.1"
                     /translation="SIASVHTFSFGGKLTRNNLNFYQHGEHASSVMNGITLIEDTQHV
                     DHNTLVHHIAPNCTSHQDYKGVFNDRAVGVFNGKIYVEKEAQKLDAFQQNNNILISDK
                     ATINAKPQLEIFA"
     assembly_gap    2632..2821
                     /estimated_length=190
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2822..>3045)
                     /locus_tag="DHV98_01090"
     CDS             complement(<2822..>3045)
                     /locus_tag="DHV98_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003439683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HCK04990.1"
                     /translation="DLMLQPRNLIVVEENAHVQIIERHQSLSSNAVLTNSVTEIFVGA
                     RAHVDYYKIQNDQKEASLIDNTYIKQERDS"
BASE COUNT          726 a          606 c          589 g          815 t
ORIGIN      
        1 tgcctttggt gataatggca tcactatcgg cccaaaaata aacccgaccg tcttgttgtt
       61 ctgctctaag ccaaactttg ctttgacagc ctttgatgat gtattggtcc gttttgaatt
      121 gcgggtcgat caaggggagc gtttttccta gaccaatgag atgttcatac ttatccatcc
      181 agtcgtcaaa cagggtaaac tcttcaatta tttcttgttg cgcttctgtg atcattgatc
      241 cttggttttt acagcgatca tgatgtaagg agattcatca gcggacaaag ataaagtatc
      301 gccattttga gtccactgca tcgggcgccc aatatgtctc aaaaatttgt attcaatggc
      361 cataacggca tcactacagt acattttggt ggccatcagt gagtccacag agatgttttc
      421 ttgacgcagg atcaaacggc caccaaactg attgcagccc gcatttccag tgagacgatt
      481 ttgttctaaa tcaaaattca gggtcggttg tgtttctgaa agggacattt cttcgattgc
      541 gatcacgtga taaagacccg acggtgctgg aatttgggat tctttaagtg tttttgagcc
      601 cccgcagctt cccatgagcc cgataactat aaaagcgcca aacaacatgg tgtttagaga
      661 atcaagtcga gttgtaaaat gaagtccacg catattttta aaattattga agcatattaa
      721 cggccctttg tacccctttg atcattatat caatttcttc ttttgtattg taaaacgcaa
      781 aagaagcccg taccgttcct gggatcccat aaaaatccat tacgggttga gtgcaatgtt
      841 gtcccgtgcg cacggcaata cccattcgat cgagtaaggt gcccacgtcg taagggtgta
      901 actgaccaat attgaatgaa actacggctg ttttgtgtgt gatatcaccg taaatcttaa
      961 gcccttcaat ttgctttaac ccctgagtcg cgtgcattaa aagttcgtgt tcgtaggcgg
     1021 caatttcctc aaggccaatc gtattgaggt attcaatagc ggctccaaaa ccaatgccac
     1081 cggcaatatt tggcgttccc gcttcaaatt tatgagggag tcccgcataa gtcgtgcctt
     1141 caaagtagac ttctttgatc atttcgcctc caccttgata agggggcagt gcctcgagca
     1201 gctctttttt accatagagc atccccacac cagttgggcc acacatttta tgcgccgagg
     1261 ttatataata atccacatct agggcctgga cgtctaccga gatgtggctg ctggcttggg
     1321 cgccatccac cagaacttgg accccgtgac cacgggccat ttcgataatg gtttcaatgg
     1381 gattaatggt tcccaatgca tttgaaacat gatttacgac cactaatttg gtctgcggtc
     1441 cgagtaaact ctttagcgtc tcgagttgaa gctgtccatt ttcgtctatg ggcagcactt
     1501 tcaatacggc accagtaagg gcgcaagcca tttgccaagg aacaatattt gaatggtgtt
     1561 ctgcttgacc tacgatgatt tcatcctttg gctggagcca actgcgaaaa ccatgggcca
     1621 ctagattgat actatgcgtg gtgcccgcag taaaaataat ttcttcgcgc agacgggcat
     1681 tgaaaaaggt ttttaccaaa tcgcgcgcac gctcataagc atcggtcgcc tcttgagaaa
     1741 gcgcatggac cccgcggtga atattggcat tttgatacgt gtaataatgc actaacgcat
     1801 caatgacctg ctgaggtttt tgactggtgg ctgcattgtc aaaataaatc aaaggcttat
     1861 tgtgcacttg ccggagcaag atggggaaat cggctcttat tttgtcaatt gcgaagccca
     1921 tagcgattaa aggtcaaaac caatttgcac attcattttt agtgcaacga gtttattaat
     1981 tctctttttg agttcaggaa tgcgcacact ttctaagaca ttattggcaa aagcatacat
     2041 caaaagggct ttagcctctt tttcagcgat tccgcgagca cgcatataga ataaagcgtc
     2101 ttgatcgagc tgaccgatcg tacatccatg agaacatttg acatcatcag caaaaatttc
     2161 aagctgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnngcaaa aatttcaagc tgaggtttgg cgttaatggt agccttatcg ctgattaaaa
     2341 tattgttgtt ttgctgaaaa gcatctagct tttgtgcttc tttttcaaca tatatttttc
     2401 cattaaatac cccaaccgca cgatcgttaa ataccccctt atagtcttgg tggctcgtgc
     2461 agttcggtgc aatatgatgc accagtgtgt tatggtcgac atgttgggtg tcctcaatta
     2521 gggtaatgcc attcattacc gatgacgcat gttctccgtg ctgatagaaa ttcaaattat
     2581 ttcttgtcaa tttaccacca aaagaaaaag tgtgtaccga ggctatagag tnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2821 ntagagtccc gctcctgctt gatataagtg ttgtcaatta acgaggcttc cttttgatcg
     2881 ttttggattt tataataatc cacatgagca cgcgccccaa cgaagatctc ggtcactgaa
     2941 ttcgtcaaaa cggcattaga cgataaggat tgatgccgct caataatctg gacatgcgca
     3001 ttttcttcaa ccacgattaa gtttcttggt tgtaacatta agtct
//
LOCUS       DPUP01000031            6487 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11615,
            whole genome shotgun sequence.
ACCESSION   DPUP01000031 DPUP01000000
VERSION     DPUP01000031.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6487)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6487)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6487
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..481
                     /locus_tag="DHV98_01095"
     CDS             <1..481
                     /locus_tag="DHV98_01095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008637299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCK04991.1"
                     /translation="DVGYGLTGSNLTLDLVYNPSGAFLPGDQEALCQDFKRRLDQSFN
                     IKFNGLFALTNLPISRFLDYLIASDNYEDYMWTLVESFNPAAARAVMCLNTLSVSWDG
                     YLFDCDFNQMLQMPINDARQHIAQYQNDLMEGRLIKISQHCYGCTAGAGSSCQGAVI"
     assembly_gap    489..610
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            655..1122
                     /locus_tag="DHV98_01100"
     CDS             655..1122
                     /locus_tag="DHV98_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCK04992.1"
                     /translation="MITLSAWSQSPIDKALKRYNTGIIPYVNTDTAFQWHQKDSVLFL
                     DTRALKEYEVSHIQGARFVGYDEFDAQKINALNIAQSTPIVVYCSIGVRSEQIGVKLK
                     QLTYNNIFNLYGGIFQWYNQSHPVVDSQNKPTLALHGYDKNWARYVEKGTPTF"
     gene            1162..1773
                     /locus_tag="DHV98_01105"
     CDS             1162..1773
                     /locus_tag="DHV98_01105"
                     /inference="COORDINATES: protein motif:HMM:TIGR04282"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCK04993.1"
                     /translation="MNQTRENHLIIFCKNPILGQCKTRLAARIGPEKALAVYKFLLEH
                     TARITTEVPAKRVVFYSNYLEPQDSFDPKVFDKDVQQGDDLGARMANAINTALTNGAK
                     KAIVIGSDLYDLTPELIVQAFDRLDTHKTVIGPARDGGYYLIGMTQMNPDLFENKIWG
                     SATVLTDTLINLKPDSPFLLPIKNDIDQFEDLYPEEVFNPLIK"
     gene            1779..2600
                     /locus_tag="DHV98_01110"
     CDS             1779..2600
                     /locus_tag="DHV98_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HCK04994.1"
                     /translation="MQIKQVEQATSYLNERGFDQPEIGIVLGTGLGALVDAVTIEQEA
                     HYSAIPHFPTATVEFHQGKLIYGILGGKKVIVMQGRFHLYEGYTPEEVTFPIRVMHAL
                     GIKRLLVSNASGALNLSYKKGEMMLITDHINLQGCSPLAFKGVDQMGERFVDLNTPYD
                     PEMCASMYSIAQEQGIDLHQGVYIGVRGPELETKAEYRYLRLIGGDAVGMSTVPEIIV
                     ANHLSLPVAAISVLTDECDPDHLAPVDISDIIASAKKAEPKMVELFRVLIERLSL"
     gene            2597..3565
                     /locus_tag="DHV98_01115"
     CDS             2597..3565
                     /locus_tag="DHV98_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004568856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK04995.1"
                     /translation="MSYLETTKDVYKKAAETPDIGLCCTTNPIGELPGLKIPKIMQEM
                     NYGCGSTVHPRDLSRNPKILYVGVGGGMELLQFAYFSREKGKVIGVDVVDEMLEASQA
                     NFKEAEALNPWFSSDFVSLRKGDALNLPLENESVDVAAQNCLFNIFKDQELKKAVAEM
                     YRVLKPHGRLVMSDPTCEQEMNVTLREDERLRALCLSGSLPIDQYVKALTDAGFGTIE
                     IRARKPYRILDPGHYPTEELIYIESIEVAAIKDPMPDDGPCIFTGKAAIYYGDQPYFD
                     DKKGHVLMPNQPLAICDKTAAALAALNRNDIFISPSTYHYDGGGCC"
     gene            3598..>3894
                     /locus_tag="DHV98_01120"
     CDS             3598..>3894
                     /locus_tag="DHV98_01120"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04996.1"
                     /translation="MKYFWLILLIGFGLNAQTNLQTSAQTSAQIRTQTSAQTSAQASA
                     GQIKLGQEGIDHQLWDHLLKRHVSDQGRVDYSSFQGDISDLNRYISALSKEAEGI"
     assembly_gap    3895..4008
                     /estimated_length=114
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4009..4532
                     /locus_tag="DHV98_01125"
     CDS             <4009..4532
                     /locus_tag="DHV98_01125"
                     /inference="COORDINATES: protein motif:HMM:PF04784.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF547 domain-containing protein"
                     /protein_id="HCK04997.1"
                     /translation="KEAEGIKIRSKEEQLAFWINAYNACTVKLICDNLPLSSIKDLSR
                     PWKQTVLKSKNNAWTLDDIEHEILRKFEEPRIHFAINCASKSCPILSNEAYRGDQIDR
                     QLNRAASVFFNDSTKNNYTEKRLNLSRIFLWFKRDFGPTEDLIQLINQYTKHNFAPNV
                     AISYLSYDWSLNN"
     gene            4532..5284
                     /locus_tag="DHV98_01130"
     CDS             4532..5284
                     /locus_tag="DHV98_01130"
                     /inference="COORDINATES: protein motif:HMM:TIGR04283"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK04998.1"
                     /translation="MSVNQGNPLNLSVVVPTLNEANHILQTIETLFQRAVYPQRIEVI
                     IVDGGSSDQTQSSVKHWQKKNAQKNVTLLQGPAGRARQMNLGASHARAKLLYFIHADT
                     LPPQNYDQHIINQEHKDGQAGCFRMAFDLPHWWLKVAGWGTRFNWKFCRGGDQSLFVR
                     KTLFDQIGGYSEDYIICEDLNLIDRLYAQTRFCVLPQKVISSARKYKSRGLWQLQWHF
                     WVIQVNYRRGHSPAQLWAYYQRNVWPNTPKNE"
     gene            5307..5720
                     /locus_tag="DHV98_01135"
     CDS             5307..5720
                     /locus_tag="DHV98_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK04999.1"
                     /translation="MKTPSIFKWTLKYGLMSALAGILCCVAPAILFMLGLMGGVVAIS
                     FADFFYQEDGSLGTGAILLRVVAVIIGAYGIYKYKTTQDQCSIDPKRKKLNLLLVGAL
                     IIILGILLFIGLEEFSSWYFDTYIVPQQQIELESK"
     gene            5729..6439
                     /locus_tag="DHV98_01140"
     CDS             5729..6439
                     /locus_tag="DHV98_01140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--dolichyl-phosphate
                     glucosyltransferase"
                     /protein_id="HCK05000.1"
                     /translation="MRAKITVIIPAINEAGAIGHVLDDLPKSATEVIVVDNGSSDNTV
                     AVAKKHGALVLTESRRGYGYACMHALKHLKSRALKHPEQTPEIIVFLDGDYSDYPEYL
                     DALVAPIEEKNMDLVIGARDSKLMEAGAMTPPQRFGNWLATWLMRHLFGARYTDLGPF
                     RAIGYEQLMAMNMSDMTYGWTIEMQLKALNMNLNYIEIPVPYRNRIGVSKVSGTLKGV
                     IFAGVKIIGWIAKHAVFK"
BASE COUNT         1826 a         1398 c         1370 g         1657 t
ORIGIN      
        1 tgatgtaggt tatggcctaa cggggagcaa cctgacactg gatttagttt acaacccaag
       61 tggggctttt ttaccgggag accaagaagc cctctgccaa gatttcaaaa ggcgcttgga
      121 tcaaagcttt aacataaaat ttaatggact ttttgcccta accaatttac ccatttctag
      181 atttctagat tatctcattg cttcagacaa ttatgaagac tatatgtgga cgctcgtgga
      241 atcgtttaat cccgcagcag ccagggcggt aatgtgcctc aacaccttgt ctgtttcatg
      301 ggacggctat ctttttgatt gtgatttcaa tcaaatgtta caaatgccga ttaatgatgc
      361 ccgacaacat attgctcagt accaaaacga cctgatggag gggcgtctaa ttaaaatttc
      421 acaacactgt tatggctgta ccgcaggggc cggcagtagt tgtcaagggg ccgtcatatg
      481 aaaagactnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn ggggccgtca tatgaaaaga cttattccct tatttggcat aatcatgatc
      661 acgctaagtg cctggagtca aagcccgatt gacaaagcct taaagcgtta taataccggt
      721 ataattccct atgtaaatac cgatacggca ttccaatggc atcaaaaaga cagtgttcta
      781 tttttggata cacgggcact aaaagaatat gaagtgtccc atatccaagg ggcacggttt
      841 gtgggttacg acgaatttga tgcccaaaaa atcaatgcat taaatatagc gcagtccact
      901 ccaatagtgg tttattgctc tatcggggtt cgatcagaac aaattggtgt caaactcaaa
      961 cagttaactt ataacaatat attcaacctt tacgggggca tttttcaatg gtacaatcaa
     1021 agtcatcccg tggtcgattc acaaaataaa ccaacacttg ccctacatgg ctatgacaaa
     1081 aactgggcac gatatgtcga aaaaggcacc cctacctttt gaattttaaa cattgttgtg
     1141 cgctaagact taggctaaac catgaaccaa accagagaaa atcatctcat tatcttttgt
     1201 aaaaatccaa ttttagggca gtgtaaaacg cgccttgcgg cgcgtattgg cccagaaaaa
     1261 gcattagcgg tttacaaatt tttgctggag cacacggcaa ggattaccac tgaggttccc
     1321 gctaaacgag tcgtttttta cagcaattac ttagagcccc aagattcttt tgaccccaaa
     1381 gtgttcgata aggatgtgca gcagggcgat gatctggggg cgcgcatggc taacgccata
     1441 aacactgcat tgaccaacgg agcaaaaaaa gcgattgtca tcggcagcga tttatacgat
     1501 cttaccccag aattaattgt tcaggccttt gaccgcctag acacgcataa aaccgttatc
     1561 gggcctgccc gagatggtgg atattatctc atcgggatga cccagatgaa tcccgatttg
     1621 tttgaaaata aaatttgggg gagtgccaca gttttaacag atactttaat taatttgaaa
     1681 ccagattcac catttcttct ccctattaaa aacgatatag atcaatttga agatctttat
     1741 cctgaagaag tatttaatcc tttaataaaa tgaaacccat gcagataaaa caggtagaac
     1801 aagccacgag ctatctcaac gaacgtggat ttgaccaacc cgaaattggc attgtgcttg
     1861 gcaccggcct cggggcactg gtcgatgccg tcactataga gcaagaagca cattattcgg
     1921 ccatacccca ttttccaacc gctaccgtgg aatttcatca aggaaagctt atttatggca
     1981 ttcttggcgg aaaaaaagta atcgtgatgc agggtagatt tcatctctat gaaggatata
     2041 cccccgaaga agtgactttt cccattcgcg tcatgcatgc tctcgggata aagcgtttat
     2101 tggtgagtaa tgcttctggc gccttgaatc tcagctataa aaaaggggag atgatgctca
     2161 taaccgatca cattaatttg caaggttgtt cgccattggc ttttaaaggg gtggatcaaa
     2221 tgggagaacg atttgtagac ctcaacacac cttatgaccc agagatgtgc gcctctatgt
     2281 actcgattgc ccaagagcaa ggtatcgacc ttcatcaagg agtctatatt ggggtgcgcg
     2341 gaccagaact cgaaacaaag gcggaatatc gctatctaag actcatcgga ggagatgccg
     2401 taggcatgag taccgttccg gagatcatag tcgccaatca tttgtcttta cccgtggcgg
     2461 ccatttcggt attgactgac gagtgcgatc cagaccattt ggctcctgta gacatcagtg
     2521 acattattgc cagtgcaaaa aaagctgagc caaaaatggt tgaattattt agagttttaa
     2581 ttgagcgttt atccctatga gttatttaga aaccaccaaa gacgtctata aaaaagcagc
     2641 agaaactcca gatattgggt tgtgctgtac caccaacccc ataggggaat tgccaggact
     2701 taaaatccca aaaatcatgc aggaaatgaa ttacggttgt ggctcaacgg tacatccgcg
     2761 cgatttaagc cgtaatccca aaatactcta tgtcggtgtc ggcggcggaa tggagctgct
     2821 gcaatttgct tatttctcaa gagaaaaagg aaaggtcata ggcgtagatg tcgtcgatga
     2881 aatgcttgaa gcttcccagg caaatttcaa agaagcagaa gctctaaacc cctggttttc
     2941 gtcagatttt gtctcgttgc gcaagggaga tgccctaaat cttccccttg agaatgaaag
     3001 cgtggatgtc gcggcccaaa attgtctttt taatatcttc aaagatcaag aacttaaaaa
     3061 ggctgttgcc gaaatgtacc gagtcctcaa accacacgga cgcctggtca tgagtgaccc
     3121 tacctgcgaa caagaaatga atgtaacact cagagaagac gagcgactac gggccttgtg
     3181 tcttagtggg agtttaccca tcgatcaata cgtaaaggcc cttaccgatg ccggctttgg
     3241 cactattgaa atacgcgcta gaaaacctta tcgtattctg gatccaggcc attaccccac
     3301 agaggaatta atctatattg aatccataga agtggccgcg ataaaagacc cgatgcccga
     3361 tgatggccct tgcattttta cgggtaaagc cgccatttac tatggtgacc aaccctattt
     3421 tgacgataaa aaaggccatg tgctgatgcc gaatcaacct ttggctatat gcgataaaac
     3481 tgccgccgcg ctggctgcgt tgaacagaaa cgatattttt attagtccat cgacctatca
     3541 ctatgatggg ggtgggtgtt gttaattatc ctacaggttc gatagacgca taaggtgatg
     3601 aaatattttt ggctcatttt actcataggc tttggtctca acgcccagac caacctccag
     3661 acaagcgcac aaacaagcgc gcagatcaga acgcagacaa gcgcacagac aagcgcgcag
     3721 gccagcgcgg ggcaaataaa attgggacaa gaaggaatcg atcatcaatt atgggatcat
     3781 cttttaaaac gtcatgtcag tgatcaaggc cgtgtggatt actcaagctt tcaaggtgat
     3841 atcagcgacc ttaaccgata tatcagcgca ctgtcaaaag aggctgaagg aattnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnca aaagaggctg
     4021 aaggaattaa aattcgttca aaagaggagc aattggcctt ttggattaat gcctataacg
     4081 cctgcacggt taaacttatt tgcgataacc tgcctttaag cagcattaaa gacctgagtc
     4141 gaccatggaa gcagacggtg ctcaaaagca aaaataacgc ctggactttg gatgacatag
     4201 aacacgaaat tttgagaaag tttgaagagc cgcgtattca tttcgccatt aattgcgcct
     4261 caaaatcatg tcctattctg tctaatgaag cctaccgggg ggatcaaatt gaccgacaac
     4321 tcaatcgcgc tgcatcggtc ttttttaacg attcaacaaa aaataattac accgaaaaac
     4381 gcctgaatct ctcgcgtatt tttctgtggt ttaagcgtga ttttggccca acagaagact
     4441 tgattcaact gatcaatcaa tacaccaagc acaactttgc tccaaatgta gccatcagtt
     4501 atttgtccta tgattggtcg ctaaataatt aatctcggtg aatcaaggca acccacttaa
     4561 tctctctgta gtcgtcccga ccttaaatga ggcgaaccat attctacaga ccattgaaac
     4621 actatttcag cgtgccgttt atccccaacg catagaggtt atcatcgtcg atgggggcag
     4681 ttcagaccaa acccaaagct cagtgaagca ttggcagaaa aagaacgctc agaaaaatgt
     4741 cacgctgctt caaggccccg ctggccgagc ccgccaaatg aatttgggtg cgtcccacgc
     4801 ccgcgctaag ctcctctatt ttattcacgc agacacccta cccccgcaaa actacgatca
     4861 acatattata aatcaggagc acaaagacgg ccaagcaggt tgttttcgca tggcatttga
     4921 cttaccgcat tggtggctga aagtggccgg ctggggcacc cgctttaatt ggaaattctg
     4981 tcgtggcggg gaccaaagtc tttttgtgcg taaaacgctt ttcgaccaaa tcgggggcta
     5041 ttcagaagac tacattatct gtgaagactt aaatttaatt gaccgtttat atgcccagac
     5101 ccgcttttgc gtcttacccc aaaaagtgat cagttcagcc cgcaaatata aatctcgtgg
     5161 gctttggcaa ttacaatggc acttttgggt gatccaagtc aattaccgac gtggacatag
     5221 ccccgcacaa ctgtgggcct actaccaaag aaatgtgtgg ccaaataccc caaaaaatga
     5281 gtaaattaac ggcttagatt cactttatga aaacacccag tatttttaaa tggacgctca
     5341 aatatggact tatgtctgct ttggcaggga tcttgtgttg tgtcgcccct gccattttat
     5401 ttatgcttgg gcttatgggc ggtgttgtcg ccatttcttt tgcagacttt ttttaccaag
     5461 aagacggctc attgggtact ggcgcgatat tacttcgcgt ggttgctgtc atcattggcg
     5521 cctatggtat ctacaaatac aaaacaactc aagatcaatg ctctatcgat cctaaacgca
     5581 aaaaactgaa tttactcctt gtaggggctt tgattattat tcttggaatt ctattgttta
     5641 tcgggctaga agaattttcc tcttggtatt ttgataccta tattgtgcct cagcagcaaa
     5701 tcgaactaga gagcaaatag agactatttt gagggcaaaa atcacggtaa ttattcctgc
     5761 catcaatgaa gctggggcca tcggacatgt gctggatgac ctcccaaaat cagctacaga
     5821 agtcattgtt gtcgacaacg gctcttcgga caacaccgta gccgtagcca aaaaacacgg
     5881 tgctttggtc ctcactgaat ctcgtcgagg atatggatat gcttgtatgc atgccctgaa
     5941 acacctcaaa tcaagagcgc tgaaacaccc tgaacaaacg ccggagatca ttgtatttct
     6001 tgatggcgac tacagcgact atcctgaata cctcgatgct ttggtcgccc cgattgaaga
     6061 aaaaaatatg gatcttgtca tcggtgcaag agactctaaa ttgatggaag ctggagcgat
     6121 gaccccgcct caacgctttg gcaattggct ggccacttgg cttatgcgtc atttatttgg
     6181 cgcgcgttac acagacctag ggccctttcg cgccattggc tatgaacaac tcatggcgat
     6241 gaatatgtcc gacatgactt atggctggac gatcgaaatg caactcaagg ccctgaatat
     6301 gaatctcaat tatatagaaa ttccggtacc ctacagaaat cgcatcgggg tatcaaaagt
     6361 ttcagggact ttaaaaggtg ttatctttgc cggagtgaaa attattggct ggattgccaa
     6421 acacgccgtt ttcaaatgat tttggagttt ctcaccgtcc ttatttatgc gctttgcctg
     6481 ttcatcg
//
LOCUS       DPUP01000032            6693 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16846,
            whole genome shotgun sequence.
ACCESSION   DPUP01000032 DPUP01000000
VERSION     DPUP01000032.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6693)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6693)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6693
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..814
                     /locus_tag="DHV98_01145"
     CDS             <1..814
                     /locus_tag="DHV98_01145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium channel protein"
                     /protein_id="HCK05001.1"
                     /translation="VLIVSSIFIVGYSIKVVSEYLLSQTNIGNLRHKKVQEKIDKLSG
                     HVIVCGYGRNGMQATQKLEAYNKSYVVVEQSEEIVERLYEHNQLAVLGNANDDEVLIK
                     AGVERASSLISALPSDADNLFVVLSARQINKDLKIISRATEETSYKKLKLAGADNVIL
                     PDKIGGDHMASLVVVPDLVEFLDNLTVSGDQDSYYVEQVPFDKVCPDGRAQQIRELDL
                     RKKTGCSIIGYKSRSGEYIVNPEADMVLEPGSKLILIGRPDQIENLKQHYRV"
     gene            902..2553
                     /locus_tag="DHV98_01150"
                     /pseudo
     CDS             902..2553
                     /locus_tag="DHV98_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304455.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alanine glycine permease"
     assembly_gap    1972..2046
                     /estimated_length=75
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2593..>2805
                     /locus_tag="DHV98_01155"
     CDS             2593..>2805
                     /locus_tag="DHV98_01155"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05002.1"
                     /translation="MGIPRLKFSHLRLTKGERSGFFIALMLFSIMLITESLPKSSGSF
                     KIDLDSSEVAAWLASYDSVIEADAQRA"
     assembly_gap    2806..2920
                     /estimated_length=115
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2921..>3303
                     /locus_tag="DHV98_01160"
     CDS             <2921..>3303
                     /locus_tag="DHV98_01160"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05003.1"
                     /translation="ADAQRALRIHPFNPNFITPAKADRLGLTAEEYGRFQEFRETGNW
                     INSAKDFQRVTQVSENWIKEFSSLFKFPKFVNKPKLEHPVQGKKIPFALASEKQLMRV
                     YGIGPAMSKRIIDAGEKWGGIANEQ"
     assembly_gap    3304..3382
                     /estimated_length=79
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3383..3624
                     /locus_tag="DHV98_01165"
     CDS             <3383..3624
                     /locus_tag="DHV98_01165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05004.1"
                     /translation="FVFDEKNIIPRNINTLYPSDLTEIPGISFSLAKSIWEFVRLRQG
                     LKDLKELHALEEIQPLLFEVIQLYLYAMKNEPEGI"
     gene            3650..4906
                     /locus_tag="DHV98_01170"
                     /pseudo
     CDS             3650..4906
                     /locus_tag="DHV98_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007097030.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
     assembly_gap    3866..3941
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4982..5176
                     /locus_tag="DHV98_01175"
     CDS             4982..5176
                     /locus_tag="DHV98_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HCK05005.1"
                     /translation="MLIIPVKDGENIDRALKRFKRKFDKTGTMRQLRSRQQFTKPSVK
                     RRAQVQKAQYIQHLRDQEEI"
     gene            5313..6215
                     /locus_tag="DHV98_01180"
     CDS             5313..6215
                     /locus_tag="DHV98_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCK05006.1"
                     /translation="MKNSGFQDFVDYLSLEKNYSKHTVTAYLKDLCFFRDFLLAHYET
                     QDFVQVNYPMIRSWIVTLVEQGKTNRTINRKISSLKAYFKFLLKTHQIEMDPMVKHRA
                     LKTATKVQVPFSMEEVNQVMELLEQEEGFEGTRDRLIVLLFYATGMRRAELVDLKLSD
                     FDWSSNVVKVLGKRQKERLIPLLESLEPVYRGYIQERFKLDHIVDQKYLLLSQKGVKI
                     YPELVYRVINGYFSKVSKKIKRSPHILRHSFATHLLDEGADLNAVKELLGHASLSSTQ
                     VYTHNSIAKLKQAHARAHPRNNKS"
     assembly_gap    6272..6465
                     /estimated_length=194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6466..6649
                     /locus_tag="DHV98_01185"
     CDS             <6466..6649
                     /locus_tag="DHV98_01185"
                     /inference="COORDINATES: protein motif:HMM:PF02482.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-54"
                     /protein_id="HCK05007.1"
                     /translation="LKVVNSSEKSNKISEILLHLPGEQLVIKKEAASFEAAIDLSVHS
                     LERGLKKTKAKQRAHI"
BASE COUNT         1737 a         1130 c         1444 g         1843 t
ORIGIN      
        1 ggtattaatt gtatcgagta tttttattgt tggatattca attaaggtgg tttcagaata
       61 tcttttgagt caaaccaata tcggaaattt aagacataag aaagtgcaag aaaaaatcga
      121 taaattgtcc ggtcatgtca ttgtttgtgg gtatggccga aacggaatgc aagcgaccca
      181 aaaattagaa gcctataaca agtcctatgt cgtagtggag cagagtgaag aaattgtgga
      241 gcgactctac gagcacaatc agctcgcagt actgggcaac gcgaatgacg atgaggtgct
      301 gatcaaagct ggagtggagc gcgcttcatc gcttataagt gcattgccga gcgatgcgga
      361 taatttattt gtggttttat ctgcgcgcca gatcaataaa gacctcaaga ttatttcgag
      421 ggcgacagag gaaacctctt ataaaaaatt aaaacttgcc ggagcagaca atgttatttt
      481 accagataag attggtggag accacatggc ctctctagtg gttgttccag atttggtaga
      541 gtttcttgat aatttaaccg tttcaggaga tcaagacagt tattatgttg aacaggtgcc
      601 ttttgacaaa gtctgcccgg acggtcgcgc acaacaaata cgcgaactgg atttgcgcaa
      661 aaaaacaggg tgctctatta ttggttataa gtctagatca ggtgaataca ttgtcaatcc
      721 tgaagccgat atggtccttg aaccgggctc taaactcatt ctaatcggtc gtcctgacca
      781 gatcgaaaat ttaaagcagc actacagggt ttaaaattag aattatctca gataaaaatt
      841 tgtcaggccc ttaatttttt gccatcttgc tgtttcttat aacataaccc aacagcacga
      901 tatgaaatat ttactcacgg tattttttac ttttttggcg cccttaatta cgagtgctca
      961 agaggttgcg gaattaggga ttgacaagca aattgaccag gcgtttaaac ctgtttcaga
     1021 cttttttagc gcgctaattt tctttgaaat tgcaggaaca ccatttgtgt taatcttgtt
     1081 ggtcgttagt gccgccttct ttaccctcta ttttggattt ccgaacatcc gttattttgg
     1141 aaaggccata aatacggtcc gtggaaaata tgatgagata gaacatcgtg ttgatgcagc
     1201 agatcaggcg acgtctgatg atgagaaaga tgaaggagaa gtaagtcact ttcaagcact
     1261 ggctacagcc gtttccggga cagtaggtaa cggaaatatc gctggagtcg ctttggccat
     1321 tgctttagga gggccaggag ccatgttttg gatgattatt tgtggtttgc tgggcatgtc
     1381 taccaaattt gtcgaatgta cccttggggt tcattatcgg gacgtgggtg aagacggaac
     1441 tgtttatggt gggcctatgt attacctgac taaggggctc aaggaaagag gctgggcgac
     1501 tttaggtaaa gtttctgcag tactgtttgc gattttctgt attggtggtt ccttcggggg
     1561 tggtaatgcg gcacaaagta atcaggccac tattgtgata aaagagcttt tgggacttga
     1621 aagtacagga gcaggatttt ggatcggtgt ggttatcgca ttttttgttg gtatcgtcat
     1681 tatcggtggg atcaaacgga ttgcttctgt aacagagaaa attgttccat tcatggcgct
     1741 gctctacatt atctgctgtt tgtatattat cattgccaat ttcggtttgg tagatgatgc
     1801 ttttggttta atcttatcag aggcttttaa tccgcaagcc ataggtgttg ggggtgttat
     1861 tggcgttctt cttgtcggat tccgtcgtgc tgccttttca aatgaggctg gtgcaggatc
     1921 cgcatcgatc gcgcattcag ctgttcgcac aaaatattct gcaagtgagg gnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnagtg agggtcttgt agcactgcta gagcccttta ttgatacagt agtcatttgt
     2101 acgatgaccg ccttagtgat tatcattttt aatttcgagg ggtattttgt ttacggtgga
     2161 gatggttctg gatcagttat gattgaagga gtctcttatg aaggtgctgg aatcacctca
     2221 aaggcgtttg cagcatacat accatattcg catattttct tgactattgc cgtcgtgtta
     2281 ttcgcggtat ctaccatgat ttcgtggtca tactacggat tgcaatcatg gaaattcttg
     2341 tttggccgcg gtaaaaaggc ggacttagcc tacaaatttt tgtttcttgg atttattatc
     2401 atcggcgctg ctgcctcgat ggattcaatt tgggcgtttt ctgatgccat gatttttgct
     2461 atggtattcc ccaatatgct gggactttat ttcttgttcc cagtggttaa agagcagctt
     2521 aaaagattct tggttgcaat aaaggagtct tagttttcgt ttaaagctct gattccccat
     2581 gatgagaata atatggggat tccaagatta aaattcagcc acttgcgtct cactaagggt
     2641 gagcgcagtg gcttttttat tgcattaatg ctattttcaa tcatgttaat cacagagtct
     2701 ctgccgaaat catctgggtc atttaagatt gacttagatt ctagcgaggt tgctgcctgg
     2761 ttagcctcat atgattcggt gattgaggcc gatgctcagc gcgcgnnnnn nnnnnnnnnn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn aggccgatgc tcagcgcgcg
     2941 ttacgcatac atccctttaa tccgaatttc attacgccgg caaaagcgga tcgcttaggc
     3001 ctaactgcag aggagtatgg gcgttttcaa gagtttcgtg agacaggaaa ttggatcaac
     3061 agtgccaaag actttcaacg ggtgactcaa gtatctgaaa actggataaa agaattttcc
     3121 tccttgttta agtttccaaa atttgtaaac aagccaaaac ttgagcatcc cgttcaagga
     3181 aaaaagatac cgtttgcttt agccagtgag aagcagctta tgcgtgttta tggtatcggc
     3241 ccagcaatgt caaaacgcat cattgacgcc ggcgaaaaat ggggcgggat tgctaatgaa
     3301 cagnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnnnnnnnnn nncatttgta tttgatgaaa aaaatataat ccctcgaaac
     3421 attaatacac tctatccttc agatcttact gagattcctg gcataagttt ttctttggcc
     3481 aaatctatat gggaatttgt tcgccttcgt caagggttaa aagacctcaa ggagttgcat
     3541 gcccttgagg aaatccaacc gctgttattt gaggtaattc agttatattt gtatgctatg
     3601 aaaaatgaac ctgagggtat ttaagtcctt ggggattaaa ttgtctttga tgaatcaatc
     3661 gtattttacc gaagagcatg aagcttttcg agactccttt cgcgcatttt tgaacaaaga
     3721 agtggttccc cacataaatc aatgggaaaa agaaggcacg atagaaccat ttatttggaa
     3781 gaagtttgcc gaaatgggct atttgggatt gtcttatccc gaggcttatg gtggtttggg
     3841 actagatttt ttctacacca taatcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntctacaccg taatcttttt
     3961 ggaggagttg cagcgggtca atagcggcgg ttttgccgcc gcaatatggg ctcatgttta
     4021 tctcgcaatg acccatctca atgcggaggg gaatgaagct caaaagagca aataccttac
     4081 cgcaagcatc cacggtgaaa aaattggggc gctttgcatt acagaacctt tcgggggaag
     4141 tgatgtgggg ggcatgcgca ctacggctgt tcttgatggg gatcattacc tgattaacgg
     4201 ctcaaagact tttattacca atggcgttta tagtgactat ttaattgtcg cggcaaaaac
     4261 aagcccagaa aaaggcaaca aggggatcag tctatttatc ttagatcgag acatggaagg
     4321 tctctctgca accaagcttg ataagttagg atggcgcgcc tcagacacgg cagaattagc
     4381 ttttgatcag gtaaaagttc acaaagatca gatgctcggg attgagggtc aaggatttgg
     4441 ttacatcatg cagcattttg cctctgagcg actcattatg gggatcaatg cccatgcccg
     4501 aagtgaatgg gcgctcgagt atacgatcgc ctatatgaag gaccgtaccg cctttggaaa
     4561 atctatatca gaatttcaag ccttacgcca tcgactggcc gagttgagca cagaagttac
     4621 tgtgtgtaag acttttaatt atgctgtggc gcatgctatg aaccgcgggt cctatgtggt
     4681 taaagaagcg actatgtcta agcttatgtc taccaaagtt tctgataaag tagcctacga
     4741 atgtgttcaa ttcctcgggg gctatggcta tatggaagaa tatccaatgg cgcgccattt
     4801 tagggacagc aggctcgggc caataggggg cggaacttcg gaaattctca aggaaatcat
     4861 cgcaaagatg gtggttgatg gtaagtccta taagccggtc acttaattta atcgaaaaga
     4921 catttttatt ttctagaaaa attttatatt tgccgtccta aagagaggag gtgatgacac
     4981 tatgttaatt ataccagtaa aagacggaga aaatatcgac agagccctaa agcgtttcaa
     5041 gcgtaagttt gacaaaacag ggacgatgcg tcaattgcgt tcaagacagc aatttaccaa
     5101 gccttctgtc aaaagacgtg ctcaagttca gaaagcacag tacattcagc atttgcgtga
     5161 tcaagaggaa atctagatca agtacatata attgcaataa atccgtcgag aaactcgacg
     5221 gatttttttt tggaaaaaaa tcaacgcgaa ttttgaaaga ataaacttcg actccataga
     5281 tttttgtaaa ttgagaatgt ccattttgaa ttatgaaaaa ctctggtttt caagattttg
     5341 tcgattattt gagtttagag aaaaattatt ctaagcacac cgttactgcc tatttaaaag
     5401 acctttgttt tttcagggac tttcttttgg cgcactacga gacacaggat tttgtccaag
     5461 tgaactatcc catgattaga agttggattg tcactttggt agaacagggt aagaccaata
     5521 gaacgattaa tcgaaaaata tcctcgctca aggcctattt taaatttttg cttaaaacgc
     5581 atcagattga aatggatcca atggtaaagc accgcgcgct caaaaccgct actaaggttc
     5641 aggtgccctt ctctatggag gaagttaatc aggtgatgga attgctggaa caagaagagg
     5701 gattcgaagg cactagagat cgtcttatcg tgttgctttt ttatgctaca ggcatgaggc
     5761 gtgctgaatt ggtggattta aaactctcgg attttgattg gtcttcaaac gtggttaagg
     5821 ttcttggcaa gcgacaaaag gaacgattaa ttcctttact tgagtcgctt gagcctgtgt
     5881 atagaggtta tattcaagaa cggttcaagc tagatcatat cgtcgatcaa aagtatttgt
     5941 tgctgtccca aaaaggcgtt aaaatttatc cagagcttgt ttaccgtgtg ataaatggtt
     6001 attttagtaa ggtgtccaaa aaaataaagc ggagcccgca tattttgcgt cattcttttg
     6061 ctacacatct tttggacgaa ggcgctgatc ttaatgcggt caaagaattg cttggtcatg
     6121 cgagtttgtc ctccacacag gtgtatacgc ataacagtat tgcaaaatta aaacaggctc
     6181 atgcacgggc gcatcccaga aataataaat cttaaccgca aaattcaatt gttatgaaag
     6241 taactattca atctccgcaa cattccgtga gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncctaa aagtggttaa
     6481 cagttccgag aagtcgaata aaatatcaga gattctattg cacttgcccg gggagcaatt
     6541 agtcattaaa aaagaggcgg cgtcattcga ggcggcaata gatttaagcg ttcactcttt
     6601 ggagcgcgga ctgaagaaaa caaaggcgaa acagagggcc catatctagt ccattttttt
     6661 tcaaaaatat ttttttgata caaatattta tat
//
LOCUS       DPUP01000033            2971 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8158,
            whole genome shotgun sequence.
ACCESSION   DPUP01000033 DPUP01000000
VERSION     DPUP01000033.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..582)
                     /locus_tag="DHV98_01190"
     CDS             complement(<1..582)
                     /locus_tag="DHV98_01190"
                     /inference="COORDINATES: protein motif:HMM:PF00302.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloramphenicol acetyltransferase"
                     /protein_id="HCK05008.1"
                     /translation="MKQKIDLQTWDRKDHFEFYTRFKEPYHGVNVSLDITALKERCKQ
                     DNSSVFMHYLHRAIIAVNKVEALRYRILNNEVYLFDTTHVTMTVARDHAPFGFSFVAF
                     NKDFSVFEAEAKQEFERVRQSKGLDLSVSRDNVVHFSALPWINFSGITHARDLESQDC
                     SPKITFGKITQNHGRWLMPVSVHVHHGLVYAKDV"
     gene            complement(918..2623)
                     /locus_tag="DHV98_01195"
                     /pseudo
     CDS             complement(918..2623)
                     /locus_tag="DHV98_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779682.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
     assembly_gap    2253..2270
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2620..2835)
                     /locus_tag="DHV98_01200"
     CDS             complement(2620..2835)
                     /locus_tag="DHV98_01200"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05009.1"
                     /translation="MTKQTDPHKTQVLENEIFETSNSGRSDAHQVNSDFSEVDFKGSK
                     WIYFIVIGLNAIYILLFYWINQLYGNS"
BASE COUNT          945 a          617 c          584 g          807 t
ORIGIN      
        1 cacgtctttg gcataaacca gaccgtgatg cacatgtact gaaaccggca ttaaccaacg
       61 tccgtggttt tgcgtgattt tcccaaatgt tattttaggg ctacagtctt gactttctaa
      121 atctcgagca tgggtaatgc cggaaaaatt aatccaggga agtgccgaaa agtgaaccac
      181 attgtctcga gaaacggata aatccaatcc ctttgattgg cgtacacgct caaattcttg
      241 cttggcttct gcttcaaaaa cactaaagtc tttattaaag gcgacaaacg aaaagccaaa
      301 aggcgcatga tcacgtgcaa cagtcatggt tacatgggtt gtgtcaaaaa gatagacctc
      361 gttatttagg atgcgataac gcaatgcctc taccttgttt acggcgatga tcgctcgatg
      421 taaatagtgc atgaacacag aggaattatc ttgtttgcag cgctctttta aggcggttat
      481 atccaatgaa acatttaccc cgtgataggg ttctttaaac ctggtgtaga attcgaaatg
      541 gtcctttcga tcccaagttt gtaggtcaat tttttgtttc attagtcttg aattaattta
      601 ttgaagttca aagtcgcaca aagatacata gcaatcaaag aacctgtcaa aaaaaaatga
      661 cagccgaggc tgtcatttta gcgggtcgat cgatcactta acctagtaca tgaatgtatt
      721 tatctcgatc ttcctgtgtg tacaattcag ctgacgccct aacatactgt gaataactcc
      781 ccaattacta tttaaaagat gcagaagcct cagtgaattg ttttacgaat atccggtcat
      841 aaatgcaccc acgcaagcaa acatgatttg cttttataaa taaaatctca gaatttataa
      901 atgctcagta aagtagctta ttgattagca cctcgaaaaa attggacgac aaatgcaatg
      961 atgattaccg caacacaacc gattacatta agccataaat aggggagttt aatcacttca
     1021 aaaagatcta aaacaaaaag agtgataaca aaggcttggt taatcagagc agcccaaaaa
     1081 atggatggcc ccttgatcgg tcgtataaaa aaggccgcca agaacacccc taaaatattc
     1141 ccgtaaaaga tcgaaccaat aatgttcact aattggatta aattatcaaa caggggtgcg
     1201 gtacaggcaa ctaaaatggc gatgaccccc caaatcagag taaagtatcg cgttattttt
     1261 aaataatgct tctcgctgtg tccagggcga tgtcgttgat ataaatcgac cgcagtggtg
     1321 gcccctaaag cattaatttc actcgctgtt gaagacatgg cggcactcaa aataacggct
     1381 aaaagtagcc caatgagccc tacgggaagt tgggtaagaa tgaaatggat aaaaacataa
     1441 tctttatcat ttgtttcagc atctttgtcg gcggcaagaa ttaattcacg cgcctctttt
     1501 ctcaaggaca attgccgggt gtttagtgca gaaatttctt tttgcaacaa atccttttgt
     1561 gccgggtctt cagcgtctag gtaggttaat tgtaaggttt gaatttgtcc cattaacagg
     1621 tctttttctt ggtccaagac cttgtattct gaggcgtatg gggaatccat aaccattcgc
     1681 tcattggtgg gattaaaatt caatggagcg gtattgaatt gataaaaaac aaagaccaaa
     1741 accccgatta agagaatgaa aaattgcatc gggactttga gcattccatt cataattaag
     1801 cccatttgac tttgccgtaa agtccggcct gatagatagc gctggacttg actttgatcc
     1861 gttccgaaat aagacagcgc caaaaagctt cccccaataa ttccactcca gaaggtataa
     1921 cgattatcga agtcgaaaga gaaatccaaa atattcattt tgtcttgagc ccccgcaatc
     1981 gttaaggctt cgtctaaacc aacctcaaga ggcaaaaaat taaggagcat gaggaaggcc
     2041 aaaaacatgc cgccaaagat gacccccatt tgttgctttt gcgtaatatt caccgctcgt
     2101 gttcctccgg tgaccgtata gaccaccact aacgtaccaa ttaaaatatt aagccctact
     2161 aagtcccaac ccagtacggc agagagtata atggatggcg caaaaatggt tatgcctgcc
     2221 gccagtcctc tttggataag gaaaaatacg gcnnnnnnnn nnnnnnnnnn agtgttctgg
     2281 tctgtacgtt aaatcgatcc tctaaataag cataagccgt aaagaccttt aaacgatgat
     2341 aaatgggcac aaagaatagg ctaataatta ccatagctat gggtaagcca aaataaaatt
     2401 ggacaaatcc catcccgtcg tgaaacgctt gtcccggggt ggataaaaaa gtaattgcgc
     2461 tagcttgagt agccattacg ctcagaccaa tggtccacca gcttgcttta tttcctcccg
     2521 tgacaaaatc tgaaacgccc gattgatttc ttgttttggc cagtccgtaa agaacgataa
     2581 aggccagaac gagccctaaa ataatccagt caatgctgct catgaattac cgtataattg
     2641 attgatccaa taaaagagaa ggatataaat agcgtttagc ccgatgacga taaaataaat
     2701 ccatttggat cctttaaaat cgacctcaga aaaatcacta ttgacctgat gggcatcact
     2761 tctgccagaa tttgaggttt caaaaatctc gttttcaagc acttgtgttt tatgaggatc
     2821 agtttgtttc gtcatgacga taggacaata aattagctaa gaatttatag gctcctgaga
     2881 tgccttcggg gatctgtcta aaaaagctta ttcccgtata aaccacagtt ccttttccat
     2941 aatgccccaa aattaatccg ccttcagttt g
//
LOCUS       DPUP01000034            5744 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_22973,
            whole genome shotgun sequence.
ACCESSION   DPUP01000034 DPUP01000000
VERSION     DPUP01000034.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5744)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5744)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5744
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            1..1239
                     /locus_tag="DHV98_01205"
                     /pseudo
     CDS             1..1239
                     /locus_tag="DHV98_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781792.1"
                     /note="frameshifted; incomplete; missing start; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase"
     gene            complement(1321..3096)
                     /locus_tag="DHV98_01210"
     CDS             complement(1321..3096)
                     /locus_tag="DHV98_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HCK05010.1"
                     /translation="MNKSILEQINSPADLRGLSLKEMGQLSEELRRFIIDIIAIKEGH
                     LGASLGVIELTIALHYVFNTPDDLLVWDVGHQAYGHKILTGRRNEFHSNRQLGGLSGF
                     PSRKESPYDTFGVGHSSTAISAALGMALASAQDGQIGRQHIAVVGDASIASGMAFEAL
                     NHAGVSHTNLLIVLNDNAIGIDPSVGAFKEYLTRKKEAGAKTPQDNLFRALNFHYSGP
                     VDGHDLSELIEALNTLKSISGPKVLHVVTVKGKGLKQAEQDQVAYHAPGQFDPKTGER
                     PLADDRPLPPKYQDVFGHTLVSLARENKNIFGITPAMPTGSSLRYMMDAFPERAIDVG
                     IAEQHAVTLAAGLATQGKIVFCAIYATFFQRAYDQVIHDVCLQNLPVIFCLDRAGIVG
                     EDGATHHGVFDLASLRPIPNLIIFAPRDARALRNMMFTAQRGLTHPIAIRYPRGRGNL
                     LDWQTPMHSLDIGTAELLQNGTTIAVLSLGTIADTVTLALDLLENKQAVTHVDMRFLK
                     PLDEALLHEICQTHQAMITVEDGMLKGGLASALAEFISVHRYPIILKSHGIADHFIPH
                     GKPAELYELCGLTPEAIAHSIIELI"
     gene            3194..3631
                     /locus_tag="DHV98_01215"
     CDS             3194..3631
                     /locus_tag="DHV98_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017497260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-specific adenosine deaminase"
                     /protein_id="HCK05011.1"
                     /translation="MLDHEYFMRKALEEAKMALEAGEVPVGAIVVAQGRIIARAYNRT
                     QALNDVTAHAEMQAITSAAHYIGGKYLHQCTLYVTLEPCQMCAGALFWSQMSEVVYGA
                     SDPKRGYLALGTQIHPKTKVHSGVLADQCAALLDNFFKGKRRD"
     gene            complement(3770..3967)
                     /locus_tag="DHV98_01220"
     CDS             complement(3770..3967)
                     /locus_tag="DHV98_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HCK05012.1"
                     /translation="MEGTVKFFNESKGYGFITNNDTGKDIFVHVTGLNGEALNEGDRV
                     EYEEQEGRKGMVAGRVRLLHD"
     gene            complement(4159..4398)
                     /locus_tag="DHV98_01225"
     CDS             complement(4159..4398)
                     /locus_tag="DHV98_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05013.1"
                     /translation="MKYSLYIIFILIVASVSFGLYIQSSGNPLAEKLIGGGMAGLFFV
                     WMPLFIYHRWKNRSIQDYMLTKENIKKMNQYKRDK"
     gene            complement(4395..>5744)
                     /locus_tag="DHV98_01230"
     CDS             complement(4395..>5744)
                     /locus_tag="DHV98_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018945400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HCK05014.1"
                     /translation="VLHLNQATRTLMIGCAAAGAMSSIFKAPIAAIIFAVEVFSLDLT
                     LMSLVPLLLASVTAIITSYFFFGNDILLPFTVVDAFSISDIPFYLILALVAGLVSIYF
                     TNTYEWIQKRFDTIPNKWHRMLLGGTLIGVLVYCIPPLYGEGFDVINNLVQGNANLAL
                     ENNLFNVSTESIYVTLGLLIGLVVFKIIASALTFGAGGVGGIFAPTLFMGSIMGYTVA
                     LILRTVGVDSANISISNFTLVGMAGLMAGVLHAPLTAIFLIAELTGGYALFIPLMITS
                     AVAYSITKYVHPHSVYTMELGRKGELITHNKDHAVLTLMDLDSVVEQNFIAINPDMSL
                     GEIVTHCIIKSNRNIFPVVTPDSGQLLGIILLDDLRPVMFERQLYLEITARDLMQNPL
                     GVVELDKDRMTDVMKKFQDTGAWNLPVVRSGAYHGFVSKSKLLTVYRRKLIDFSGAT"
BASE COUNT         1594 a         1235 c         1363 g         1550 t
ORIGIN      
        1 cgataattca ggagggacct ctaccgatcc aaatgacgga tgtgatacca tcactaacgg
       61 tgcagatctc aacggaaaga tcgttgtgat tcgtcgtggg gagtgtgaat ttggatttaa
      121 ggctttggcc gctcaaaatg aaggtgcatt ggccgtaatt atggtcaata acgttcctgg
      181 cgatcccata atcatggcgc caggggccgt aggagcccag gtgactatcc cgttatttat
      241 ggtttctgat gttattggag aaccaattat tactgaatta ctggccggaa acacggtcaa
      301 tggaaccatc gatggagggg cagtaccccc gtcaattgat ggagacttag acaatgaaat
      361 tatcgctcat gagtacgccc acggtatttc taacagactg acaggaggcc ctgttaacac
      421 aagctgttta ggaaacgcgg agcaaatggg tgaaggatgg agtgattatc ttggattaat
      481 gatgacgatg caggtcggag atcagcgcac agacgttcgt ggtcttgccg cttatgcttc
      541 tggtaatccg aatggaatcc gtgaggcacc gtatagcact gatttctcag tgaacgatta
      601 cacttatcaa gataccaatg cgaacgtatc ccaaccccat ggtattggtt ttgtttgggc
      661 cactgcactt tgggagatga cttgggatct tatcgatctt tatggttttg acgcagattt
      721 ggtttacggt acaggaggaa acaacatcgc gttccaattg gttatggacg ggatgaaact
      781 tcaaaattgt tctcctggat ttatcgatgg acgtgatgcc attctagagg ctgatgagtt
      841 ggcaaatgga ggattgcacc gctgtttgat ttgggaagct tttgcccgcc gtggtgttgg
      901 atttanncca ctcagggaag tgccttcaat cgtgcggatc aatctgaagc gtttgatctg
      961 cctgcagact gtagtctttc tactggagat aataactatg acaataactt tagtatttac
     1021 ccgaatccaa actacggagc gattaacatt cactctaagg ttgatgttgg gaccgcaaaa
     1081 gtttcaatca tggacttaaa cggacgtact gtttgggcac agtcacttga attaggcaac
     1141 caaactcaag ttgatgcctc tatgctcagc agcgggattt atttggtgcg tattcagggg
     1201 aataattata cccataccag caagttgatc atgcgttaag ccgagagaca cctgcaatag
     1261 atgaactgaa aagtgccccg aaaggggcac tttttttatg atgtaaatag ggcgcttgtc
     1321 ctaaattaat tctatgatgc tatgggctat tgcttctgga gtaagtccgc aaagttcata
     1381 aagttcagcg ggcttcccgt gcggaataaa gtggtccgcg atgccgtgag actttaaaat
     1441 tattgggtat ctgtggacag aaataaattc agctagggca ctggcaagcc cgcctttgag
     1501 catgccatct tcgacggtga tcatggcctg atgggtttga catatttcat gcaatagggc
     1561 ctcatcgagg ggctttaaaa aacgcatgtc tacatgagtc acggcttgtt tattctcgag
     1621 caaatccagg gctagggtga ccgtgtcggc aatagtcccc aggcttaaca cagcgatcgt
     1681 tgtcccgttt tgaagcaatt cggccgtgcc aatatccagg gaatgcatag gcgtttgcca
     1741 atctaaaaga tttccccgtc ctctggggta ccttatggcg atcggatggg tcagaccgcg
     1801 ttgggccgtg aacatcatgt tgcgcaatgc acgcgcatcg cgtggtgcga aaataattag
     1861 gttaggaatg ggtctcaaag aggccagatc aaaaactcca tggtgggtcg cgccatcttc
     1921 cccaacgatt cccgctcggt ccagacaaaa aattacaggc aaattttgca gacaaacatc
     1981 gtgaatgacc tggtcataag ccctttgaaa aaacgtggcg taaatagcgc agaatacaat
     2041 tttgccttgg gttgcgagtc ctgcggcaag ggtaacagcg tgttgttctg caatccccac
     2101 atctatggcg cgctcgggaa aagcgtccat catatagcgc agagaggacc ctgtgggcat
     2161 cgcaggggta atgccaaaaa tatttttatt ttcacgtgcc aaagacacta aagtatgccc
     2221 aaaaacatct tgatattttg ggggtaaagg ccggtcatcg gctaagggtc gttcgcctgt
     2281 ttttggatca aattgtcctg gagcgtgata ggccacttgg tcttgctccg cttgtttaag
     2341 tcctttaccc tttacggtaa ccacgtgcaa tactttaggc cccgagatcg atttcagggt
     2401 attgagcgcc tcaatgagct cagataaatc gtgaccatcg accgggccgc tgtaatgaaa
     2461 attcaatgcg cggaatagat tgtcctgcgg ggttttagcg ccggcttctt tttttcttgt
     2521 aagatattct ttgaacgcgc cgacacttgg gtctatgccg atggcattgt cattgagtac
     2581 aatcaaaagg ttggtatgag aaactcctgc atgatttagg gcctcaaagg ccatgccgct
     2641 ggcaatactg gcatcgccaa ccaccgcgat gtgctgccgg ccgatttgtc cgtcttgagc
     2701 actggctaag gccatgccta aagctgctga aatggccgtg ctgctgtgac ctacgccaaa
     2761 tgtgtcgtag ggactttctt tgcgagaggg aaaaccactg agtccgccga gctgacgatt
     2821 agaatgaaat tcattacgtc ttcccgttaa aatcttatgc ccgtaggctt gatgacccac
     2881 atcccaaacc aataaatcat ctggagtgtt gaaaacataa tgaagggcaa tagtgagctc
     2941 aattacccct aaactagcgc cgaggtgtcc ctctttgatg gcaatgatat cgataataaa
     3001 ccgcctgagt tcttcagaga gctgccccat ttctttaagg ctcaaccctc ttaggtctgc
     3061 gggagaatta atctgctcta aaatcgattt attcatacgc caaagatacg cttattcgtt
     3121 tgtaggtaaa gtctttgccc tttatttgta actttaacgc ccgcccaaaa aactcagtgg
     3181 gctcaattta attatgctcg atcacgaata tttcatgcgc aaggccttag aggaagctaa
     3241 gatggcgctc gaggcagggg aagtccctgt gggcgctata gtcgtggcac aaggacgcat
     3301 tatcgctcgg gcctataatc gaacccaagc cctcaatgat gtcacggccc atgctgaaat
     3361 gcaagccatt acttcggcag cgcattatat agggggtaaa tatcttcatc agtgtacttt
     3421 atatgtgacc ttagagccat gccaaatgtg tgctggagcc cttttttgga gccaaatgtc
     3481 agaagtggtt tatggggcaa gtgacccaaa gcgcggctat ttggccctgg gcacgcaaat
     3541 acatccaaaa actaaggttc attctggggt tttggctgat caatgcgccg ctttgcttga
     3601 caattttttt aaaggaaaaa ggcgtgacta ggcagtcacc tgcgaaatct aggggtcagg
     3661 tcagggcgca aaaagttgaa tctcatgccg ccccctttaa ttgacatagg ggcattaaaa
     3721 aaccccgagt gtttgctcga ggttaatgtg tttcggtatg ttgtagcgat taatcgtgta
     3781 aaagacgaac tcttccggct accatgcctt ttcttccttc ttgttcttcg tactcaactc
     3841 ggtcgccttc attaagggct tctccattca atcctgtgac gtgtacaaaa atgtctttgc
     3901 cggtgtcatt gttggtgatg aatccgtatc cttttgattc gttaaaaaac ttaactgttc
     3961 cttccatagc aataattaaa aaaatattaa ataaggccac aaaggtaact taaatatgtt
     4021 tccaaagttt aattctatgt aaaatttttt gaaaatcaat taattacgag gtaacatagg
     4081 ggtaaaaaag cgattaattc cgtgttgatc tgcacattat ctccggctga aattatcggt
     4141 atattacttt ttttgaaatt acttatcacg cttgtactga ttcatttttt tgatgttctc
     4201 tttggtgagc atatagtcct gaatcgaacg atttttccaa cgatggtaaa taaatagagg
     4261 catccaaaca aaaaatagac cggccatgcc gccgccaata agtttttcgg ccaaaggatt
     4321 cccgctgctt tgaatataca gaccaaagga aacgctggcg acaataagga taaaaattat
     4381 gtagagggaa tatttcatgt cgctccagaa aaatcaatga gtttacgtcg atatacggta
     4441 aggagtttag attttgatac aaacccgtga taggcaccag agcgcacaac gggtaagttc
     4501 caagccccgg tatcttgaaa ttttttcatt acgtcggtca tgcggtcttt gtcaagttcg
     4561 accaccccca aaggattttg cattaaatca cgcgcggtaa tttctaaata caattgtcgt
     4621 tcaaacatga ctggccttaa atcgtctaat aaaataatcc ccaagagttg gccactatct
     4681 ggagtaacta cgggaaaaat attgcgattg gatttaatga tgcaatgggt tacgatttcc
     4741 cctaaactca tgtcgggatt tatggcaata aaattttgtt ctacgactga atctaagtcc
     4801 attagggtta atacagcgtg atccttattg tgggtaatga gttcgccttt acggcccaac
     4861 tccatggtgt aaactgagtg agggtgaaca tatttcgtaa ttgaataggc cacggccgaa
     4921 gtaatcatta atgggataaa gagggcatat cctccagtga gttcggcaat caaaaatatg
     4981 gccgtcaggg gcgcgtggag gacgccagcc ataagtcccg ccatgccgac taaggtaaaa
     5041 ttactgatcg aaatgttcgc agaatcaacc cccacagtgc gcagtataag cgctacggtg
     5101 taccccataa tgctgcccat aaatagtgtt ggcgcaaaaa taccgcccac accaccggcg
     5161 ccaaaggtga gggcgctggc gatgatttta aagacaacca gtccaatcaa tagccctaaa
     5221 gtgacataaa tactttcggt ggatacatta aataggttgt tttctaaagc caaattcgca
     5281 ttgccttgaa ccaaattatt gatcacgtca aacccttctc cgtaaagtgg ggggatgcaa
     5341 tacaccaaga cccctataag ggttccccca agcagcatcc ggtgccattt attgggaatt
     5401 gtatcaaacc ttttttgaat ccattcataa gtgttagtaa agtaaataga cactaatcca
     5461 gccactaggg ccaaaatcaa ataaaatgga atatcgctga tgctaaaggc atctaccacg
     5521 gtaaaaggca ataatatatc attgccaaag aaaaaatagg aagttataat agccgttact
     5581 gaggccaaga gtaagggaac tagggacatg agcgtgaggt ccaaactaaa aacttctacg
     5641 gcaaaaatta tggcggcaat gggggcttta aaaatggagg acatggcccc tgctgccgca
     5701 caaccaatca taagtgtgcg tgtggcttgg ttgaggtgca gcac
//
LOCUS       DPUP01000035            4792 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15411,
            whole genome shotgun sequence.
ACCESSION   DPUP01000035 DPUP01000000
VERSION     DPUP01000035.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4792)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4792)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4792
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..2262)
                     /locus_tag="DHV98_01235"
                     /pseudo
     CDS             complement(1..2262)
                     /locus_tag="DHV98_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751181.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RND transporter"
     assembly_gap    1868..1924
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2285..3268)
                     /locus_tag="DHV98_01240"
     CDS             complement(2285..3268)
                     /locus_tag="DHV98_01240"
                     /inference="COORDINATES: protein motif:HMM:PF16576.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HCK05015.1"
                     /translation="MAKNRFELFAEVQGILKNGTREFKPGQIFKKGDLLINIDAQEFR
                     ASLVSARSNFQNTIAGMMADLKLDYPRAYDQWNGFLADFDLEKPLPALPEIMDKKAEF
                     FIAGRGVTSAYYAIKNLEERLVKYSIRAPYDGVLASASVTEGTLVRPGQNLGEFIATD
                     VYELMLSIAPDASDYLNIGDAVSLRARSGDRTFSGTVTRINKRVDPTTQMVQVFVETR
                     DPSLKEGMYLEAEINAGSVEDAILMSRKLLIDESSIYAVKDGLLVLLDVRPVYFMPNK
                     MVVRGIADGSMVLTQPVAGAHSGMMVQVFDAQKGVNNDEIISQQQKTSTEN"
     assembly_gap    3310..3372
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3494..>4792)
                     /locus_tag="DHV98_01245"
     CDS             complement(3494..>4792)
                     /locus_tag="DHV98_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05016.1"
                     /translation="IYPGAVVLVSHDKMFLDNVTNRTIELSTGRMYDMKLPYTKYLVA
                     REERRSQQMSIQKNQQKQIEQTERLIEKFRAKASKASMAQSLIKKLDRMDLIEVDEDD
                     NAVMTLNFPVSRDPGKVVFVLEQIAKNYGNKSVLSEVDLRISRGDKIAFVGQNGQGKS
                     TLAKIMVEAISYEGSLTLGHNVDIGYFAQNQAEYLDGNKTVEQTMIDAADQSTRPKVR
                     DILGAFLFRGEEVDKYVRVLSGGERNRLALAKLLLQPLNVLVMDEPTNHLDIKSKNVL
                     KQALMRFQGTLILVSHDRDFLQGLTQVVYEFKEGHLREYLGDIDFFLEQRNLVNLREA
                     EKRTLHADEPTKQKNKNESQLSYKEQKKKKSLANKLSQIERDIQMLEAEIKSLDEDLV
                     KNPESLSTQDDFYKKYEANKSKLESLMTDWESVSFDLEQL"
BASE COUNT         1339 a         1112 c          883 g         1338 t
ORIGIN      
        1 ccctaaagca taggcagatt ctttaagctg gatattaatt tctttaatcc cctcaggatc
       61 cgtatcggcg acatcaacca acagaggatt ctgaaccatg agttccaaaa gttcgtcttt
      121 cgccgctttc agctcagaag tgttcgcccc taataaggac accgagactg gactgccccc
      181 aaagtttcct cctgaaccaa aagtcaatcg ttcgacacca aagacaggcc ctgtggcctt
      241 gcgaattgca ttgttaattt ctggagcccc aaaatcacgc tgctctccgg gcagcaaatt
      301 aatttccagt gacgccttat tattcccagg gccaacgttt tttataatat tttgaacgac
      361 ttgaaagcct cccgtttgtt tggccgtgta gttgtcattg acctgccatg cagccctctc
      421 gattcgactg attatcgaat ctgtgatcac tggatttgtt ccttctggca tcaatagatt
      481 gatctgcact tgatcactag cgatcatggg aaaaaatgcc ccacgaataa tgcctcctcg
      541 taccgaacca atcgtaagga ttaaaagcgc gagaaaaatt gaaaaagtaa taaaccgctg
      601 acgcaaagca aaagccaaaa caggggcata gagtcgatcc cgcagataac tcatcaaccg
      661 atcgccataa acattgagct ggcgtaattt cagaaaaaca cgaccaaaca tcgtcttttt
      721 agcctccttt ggctcagatt ttataagcgc tttagagtgt gcaatgtggg caggtaaaat
      781 aatcagggct tcaattaacg atacggtcaa cgttaaaatc acaatgacac tcacctcgcc
      841 aaagaaggcc ccaatgcggc catcaagaaa aagaaaagtc gaaaacgcca agaccgtggt
      901 aataatcgcc gagagtatcg ggggaattac ttccatagtc ccatcgatgg ccgcctgaat
      961 gcgtgatttc ccgcgctcgt agtgttgata gatgttttca ctaatcacaa tgccatcgtc
     1021 cacaaggatc ccaatcacga tgatcattcc gaacaaactc aggacattga tggtcacccc
     1081 aaattgattg gcaaatatga acatacccaa gaatgaaatg ggcaatccaa atgcgaccca
     1141 aaacgccaga cgcgtattga gaaaaataga taaaaataag agcacgagaa aaatccccat
     1201 agcgccattt tccatgagta aatctgttct ctgctctaaa gttacagcag catcattaat
     1261 cacatccaat tgcaccccag tatgggtttg attgtactgc tgaatgtatt cttttacttt
     1321 ggtggaggta ctgattaaat cctcgttatt ggtattcgta atttctataa ttaccgcctt
     1381 attaccatta aaaaaagtgg cattgggcga ctcagaaaaa cgatctcgaa cttctgcgac
     1441 atcctgaaga cgcacgacac ttccatcatt ttttgatcga atgataagac cgtttagcgc
     1501 caccccatag taagcgcggt tattggcacg tatcagataa tcctccgcct gagtcttaat
     1561 atttccccct gtactgagaa tattagcgcg tgctaccgcc gtagcaactt cagaaaagct
     1621 aagtccatag gccaataaat cagcttcccg aacagcaatt tcaatttctt ggtcgggata
     1681 accgctaacg gcaatttgag agatgccatc aattcgtctg agatcatttt caatttgacg
     1741 accgatatct tttagcgccg caagtccaac atcttgacct gaaatcgcaa actcaatagt
     1801 acgccgtacg ttttcacgtt tagccaccac aagaggctcc atgcctgttg ggaaattcgg
     1861 cacgcgannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnacggca ttttttacct cagccaaaag cacgtctata tcgcgaccgg tctcaatttc
     1981 gacggtaatg ctccctccgt tttctctgga cactgaagtc actcgatcta tgccgatgag
     2041 gcctttgagg ttgtcctcaa tttttaaaac gattccctct tcaatttctt gaggggccgc
     2101 ccccggatag gcgatattaa tattaattat ttcaggatct tgaaggggaa agaaagagga
     2161 ttttagttgc ttggctcctg cgatacccaa aaccacaaag gccaggataa taacatttac
     2221 ggcgacctcg taacgaataa aataagtgat cagtttacgc atgatgtttt aatgtacggg
     2281 tccgttaatt ctctgttgaa gtcttctgtt gttgagaaat aatctcatca ttattgacgc
     2341 ccttttgggc atcgaaaact tgaaccatca tacccgaatg tgctccagcg accggttgcg
     2401 ttaaaaccat acttccgtct gctataccgc gtaccaccat tttattgggc ataaaataaa
     2461 cagggcgaac atccaaaagc acaagtaatc cgtctttaac ggcataaatt gacgattcat
     2521 cgatgagtaa ttttcgtgac atgagaatgg catcttcgac agatccagca ttaatttctg
     2581 cttcaaggta cattccctct ttaagagacg ggtctcgagt ttcaacaaaa acctgaacca
     2641 tttgcgtggt aggatctacg cgtttattaa ttcgtgtaac tgttccacta aaggttcgat
     2701 ctcctgaacg agcacgcaaa gacacggcat cacctatatt cagataatca cttgcatcag
     2761 gggcgatact cagcatgagc tcataaacat ctgttgcgat aaattcacct aagttctgcc
     2821 ccggccgaac cagggtgccc tcagttacag aagcactggc caaaacacca tcatatggcg
     2881 ctctaatact gtatttaacc agtcgttcct caaggttttt aatcgcgtaa taagcagaag
     2941 tcactccgcg tccagcgata aagaattctg ctttcttatc cataatctca ggtaaggccg
     3001 gcaggggttt ttctaaatca aaatccgcca aaaagccatt ccactgatca taggccctgg
     3061 ggtaatccaa tttgagatct gccatcattc ctgcaatagt attttgaaaa ttactgcgcg
     3121 cagacacgag tgaagcccta aattcttggg catcaatatt gatcaataaa tcccccttct
     3181 taaagatttg acccggttta aattcacggg ttccattttt caaaatccct tggacttcag
     3241 caaataactc aaatcggttt tttgccatta ataagccatt agtagttata gaaattggta
     3301 ccggaccatn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnaatcgcga ttacggtatt aatgattttg cgcacggaag catgttaaat
     3421 tagttattct taattcgcta gcgttaaaat taaaggcttt accccatgat aacgttaaac
     3481 atatcacaaa aaattatagc tgctctaaat caaaactcac tgattcccag tccgtcatca
     3541 aagactcgag tttggattta ttcgcttcat attttttata aaaatcatct tgagtactga
     3601 gggattcagg attttttacc aaatcttcat caaggctttt aatttctgcc tctaacattt
     3661 gaatgtcccg ttcgatctga ctcaacttat tggcgaggga ttttttcttt ttttgttctt
     3721 tatagcttag ttgtgactca tttttatttt tttgcttggt cggctcatcg gcatgtaatg
     3781 ttcgcttttc agcctcacgc aaattcacca aattgcgctg ttctaagaaa aagtcaatat
     3841 cccctaaata ttccctcaag tggccctctt tgaattcata aaccacctgg gtcaagccct
     3901 gcagaaaatc tctatcgtga gagaccagga ttaaggttcc ttgaaagcgc ataagggcct
     3961 gctttaaaac attttttgat tttatgtcta agtggtttgt gggctcatcc ataaccagca
     4021 cgtttaatgg ctgcaagagc aatttggcca aagccaatcg attacgctct ccaccagaaa
     4081 gcacccgaac atatttatct acttcttcgc ctcgaaacaa aaaggcgcct aaaatatctc
     4141 ttactttcgg gcgtgtgctt tgatccgcag catcgatcat cgtctgctct acggtcttat
     4201 ttccgtctaa atactcagct tgattttggg cgaaatagcc gatatctaca ttatggccca
     4261 aggttaggga tccttcatag gatatcgcct cgaccataat tttagccaaa gttgattttc
     4321 cttgaccatt ttgccctaca aaagcaattt tatctcctcg tgagattctt aaatcgacct
     4381 cagagagcac ggacttattc ccgtaattct tggcaatttg ctccaataca aagaccactt
     4441 tacccgggtc tctcgatacc ggaaaattaa gggtcattac ggcgttatca tcttcatcaa
     4501 cctcgatcaa atccatacga tccaacttct taatcaagga ttgagccata gaggcttttg
     4561 aggcctttgc ccgaaatttt tcaataaggc gctcggtttg ttcgatctgc ttttgttgat
     4621 ttttctgaat ggacatttgt tggctacggc gttcctcacg cgctaccaaa tacttcgtat
     4681 aaggcaattt catgtcatac atgcgccccg tggacaactc tatagttcgg ttggtgacat
     4741 tatccaaaaa catcttatca tgactcacta aaactacggc cccaggatag at
//
LOCUS       DPUP01000036            6316 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5576,
            whole genome shotgun sequence.
ACCESSION   DPUP01000036 DPUP01000000
VERSION     DPUP01000036.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6316)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6316)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6316
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..369)
                     /locus_tag="DHV98_01250"
     CDS             complement(<1..369)
                     /locus_tag="DHV98_01250"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05017.1"
                     /translation="MRLLTFFLCLTILSCNGPNSSTHKKNQGSQDSLKQNDDKAIIEK
                     QNAKRTPRSTGSIQQDYPEIKSEEIEQNREKLPVLTQDNVVELLTEFGKQNLQNKVRI
                     KTRFGEISIELFDETPLHRAN"
     gene            375..983
                     /locus_tag="DHV98_01255"
     CDS             375..983
                     /locus_tag="DHV98_01255"
                     /inference="COORDINATES: protein motif:HMM:PF00293.26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme A pyrophosphatase"
                     /protein_id="HCK05018.1"
                     /translation="MDFKVFASALAKIEKIPLPGHFGHKGLLPAVNHQRWAGVLCLFY
                     PDEKGKTHFVLIRRQVSTGPHSGQVAFPGGRKDPDDYSMAETALRECEEEIGVNRHSI
                     KLFKAMSELYIPPSDFWVKPYMGLVNYSPKFIPQKEEVAGLIFVSAAELFDDTLFFTE
                     QIHYPQRGEMNMPVFDFQGNRVWGATAMMLFEMRQTLGEIIS"
     gene            1027..1794
                     /locus_tag="DHV98_01260"
     CDS             1027..1794
                     /locus_tag="DHV98_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HCK05019.1"
                     /translation="MGLFKRNPFGHILFLKKWLIRILGSATHRRFKGFNQLQIEGSEI
                     IKNLPETNVLFVSNHQTYFADVVAMFHVFNASLSGRVDSIKNVGYLWNPKLNLYFVAA
                     RETMQAGLLPKILAYAGSVSIDRTWRAQGQDVNRQVKMSDLHNINRALEDGWVITFPQ
                     GTTTPWKPIRRGTAHIIKQNRPLVVPIVIDGFRRSFDKKGIRIKKRGILQSMEIKAPL
                     EIDYDNETVDQIVERLEYAIEQHPSFLKVISEEDLKK"
     gene            complement(1936..3000)
                     /locus_tag="DHV98_01265"
     CDS             complement(1936..3000)
                     /locus_tag="DHV98_01265"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05020.1"
                     /translation="MSLSLLGFLQQELVLPLEPDFNLPYMKRLLFSIFCALSLGVHAQ
                     DTFSIIALDPETGDIGSAGASCINLNNSNWDQWITDIIPGRGGVNSQAYVCIPNVNLE
                     NAMDRMATGDSPQEIIDWLMLNDACGSQNFNPEYRQYGIVDFDLAGEARSAGFTGSLT
                     DDYKEDRQGLTYSIQGNILLDQSVIDQMEFNFLNTTGTLADRLMAALQGANFPGADNR
                     CLSSGTSSRAAYMVVYHADDTPGEPYLRLVVPAQSPGIEPIDLLQGLYDDFTTLGAED
                     QNILDQIKLWPNPAANRINLTLPGQVILQDVVVRNVLGQRQLIQRSENSLEVGDLSPG
                     LYLIKVYTSTGAQVLRFVKS"
     gene            complement(2936..>3392)
                     /locus_tag="DHV98_01270"
     CDS             complement(2936..>3392)
                     /locus_tag="DHV98_01270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05021.1"
                     /translation="EHNEPQHTDSVSGQSLIMTKDTLASLDRVIYWAKFLSILGFIGV
                     AFMLIGALSIAFVGNSIMGAEVAGLSVIYFVFAAIYFMPMYYLFKFATHARQGLTLRN
                     QHETDQGLIYLAAHYKFIGIMAIVLLSLYVLIFIGVFAAGIGLASGAGL"
     assembly_gap    3393..3508
                     /estimated_length=116
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3533..>3891)
                     /locus_tag="DHV98_01275"
     CDS             complement(3533..>3891)
                     /locus_tag="DHV98_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015363461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SsrA-binding protein"
                     /protein_id="HCK05022.1"
                     /translation="LRSGQASIAESFCEFSNGELFVINMTIQEYSHASHFNHQAKSAR
                     KLLLQRRELNKLEKAVKNTGLTIVPLHLYINDSGLAKIEIALCRGKKLYDKRETLKDR
                     DSQRDLGRIKKTHNTR"
     assembly_gap    3892..4061
                     /estimated_length=170
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4062..4167)
                     /locus_tag="DHV98_01280"
     CDS             complement(<4062..4167)
                     /locus_tag="DHV98_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein"
                     /protein_id="HCK05023.1"
                     /translation="MALSKNISIKNRKARFNYEVIDRFTAGIVLKGTEI"
     gene            complement(4217..4774)
                     /locus_tag="DHV98_01285"
     CDS             complement(4217..4774)
                     /locus_tag="DHV98_01285"
                     /inference="COORDINATES: protein motif:HMM:PF00300.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate mutase"
                     /protein_id="HCK05024.1"
                     /translation="MRSTRHTLSILLISAFIFGCQNHSKIETDSSVNPIVDSETALSG
                     VYYLIRHAEKDRANPKVKDPELIPAGLERAQKWQQYFDSIPLAGIYSTSYKRTLQTII
                     PTAAQKSLNPIIYEPLDLVNDDFYTRSSQGHWLIVGHSNTIPQLTNTLMRMDTLNDIP
                     DSLNSRLYRVDYRSNPATLRLFHIE"
     gene            complement(4771..5259)
                     /locus_tag="DHV98_01290"
     CDS             complement(4771..5259)
                     /locus_tag="DHV98_01290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HCK05025.1"
                     /translation="MNTPDKILESRALVRFQDCDPFNHLNNAAYLNYLVNAREDQLVK
                     HYGINIYDVKSLGGKSWVVSSNQIAYLRPAHLMEEVVMQSQLIGYSDTETHVELRMFN
                     HNKSQLKAVMWGKYVHIDLVQQKRTTHSEELMALFEQALHSVDEANFEQRAAFLKQFN
                     FA"
     gene            complement(5301..>5864)
                     /locus_tag="DHV98_01295"
     CDS             complement(5301..>5864)
                     /locus_tag="DHV98_01295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014082871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system ATPase TssH"
                     /protein_id="HCK05026.1"
                     /translation="HPDTFNVLLQVLDEGRLTDNKGRLADFKNSIIVMTSNLGSGVIE
                     QSIEDLGHNQTALEKAKVDIMGLLKQTVRPEFLNRIDDIIMFEPLTQIDLASIVELQL
                     KSVQKLLSAQGITLDATPEAKAWLAQRGFDPQFGARPVKRVIQREVLNALSKSILSGE
                     LQTDSIILIDCFDNALVFRNEKDLVIS"
     assembly_gap    5865..6122
                     /estimated_length=258
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6123..>6316)
                     /locus_tag="DHV98_01300"
     CDS             complement(<6123..>6316)
                     /locus_tag="DHV98_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016420455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05027.1"
                     /translation="SFPTRRSSDLIRRSRAGLQDAKKPIGSFLFLGTTGVGKTELAKA
                     LAEYLFDDENAITRIDMSEY"
BASE COUNT         1614 a         1187 c         1257 g         1714 t
ORIGIN      
        1 attggcacgg tggagcggtg tttcgtcaaa taattcaatg cttatttccc caaaacgggt
       61 ttttatgcgc accttatttt gtagattttg tttgccaaat tcagtgagca gttccaccac
      121 attatcttgt gtaagcactg gaagtttctc tctgttttgt tcaatttctt cgctttttat
      181 ttcaggataa tcttgctgta ttgagccggt ggagcggggc gtacgctttg cattttgctt
      241 ctcgataatc gctttgtcgt cattctgttt taaactatct tgtgacccct gatttttttt
      301 atgggtggac gaattggggc cgttgcacga gaggatggtc aagcacaaaa aaaaggtcaa
      361 aagacgcatg agtgatggat tttaaagtat tcgcttcggc attagcaaaa atagaaaaaa
      421 tccccctgcc tggacatttt gggcataagg ggcttcttcc tgcggttaat catcagcgtt
      481 gggcaggagt cttgtgttta ttttatcccg atgaaaaagg gaaaactcat tttgtattaa
      541 tccgccgtca ggtttccacg gggccgcatt ctgggcaagt cgcttttcct ggaggtagga
      601 aagatcctga cgattacagt atggccgaga ccgctctaag agaatgtgag gaagaaatcg
      661 gggttaatcg tcactcgatt aagttattta aggccatgag tgaactctat attcccccaa
      721 gtgatttttg ggttaaaccg tatatggggc tcgtgaatta ttctccaaaa tttatacctc
      781 aaaaggaaga ggtcgcagga ttaatctttg tttctgctgc tgaattattt gatgacactc
      841 tattctttac agagcaaatt cattacccac agcggggcga aatgaatatg ccagtatttg
      901 attttcaagg aaatagagtt tggggcgcga cagcaatgat gctttttgaa atgcgacaaa
      961 cccttggtga aatcatctca tagcaatttt atatatttgt tagctttcaa caactaacct
     1021 ctagatatgg gcttatttaa aagaaatcct tttgggcata tattgttttt aaaaaaatgg
     1081 ctcattagaa ttttaggatc cgccacccat agacgattta aagggtttaa tcaactacaa
     1141 atagagggga gtgaaatcat caagaacctt ccagagacca acgtgctttt tgtctcaaat
     1201 catcagacct attttgctga tgttgtggcg atgtttcacg tctttaatgc cagtcttagt
     1261 ggccgtgtag acagtataaa aaatgtcggt tatctctgga atccaaaatt gaatctctat
     1321 tttgttgctg ctcgagaaac gatgcaagcc ggtttgcttc caaagatttt agcctacgca
     1381 ggttctgtaa gtatcgatcg tacgtggcgt gctcaaggtc aagacgttaa tcgtcaagtt
     1441 aaaatgagcg atttacacaa tattaatcgt gccctagaag atggttgggt aattactttc
     1501 ccgcaaggaa ccaccacgcc ctggaagccg attcgtcgcg gtacggccca catcattaaa
     1561 caaaacagac cgctggttgt tcctattgtt atcgatggct ttagaagatc atttgataaa
     1621 aaaggaattc gaattaaaaa acgaggaata cttcagtcta tggagatcaa ggcgcccctg
     1681 gagattgatt atgacaatga aactgtcgat caaatcgttg agcgacttga gtacgcgata
     1741 gaacagcacc cctcattctt aaaagtaatc tctgaagagg acctgaaaaa ataagaggag
     1801 ctcaacgagt tacgtcgcta ttcggctcgt atgggatctg aggattagtg gggtaaagtt
     1861 taacggcgga acaataaatg ttctaaaatc tcccatacgg ggcgattgat actcctttat
     1921 acactccctt aattatcaag actttacaaa acgcaacact tgcgctccag ttgaggtata
     1981 aactttgatt aaatataatc caggagataa atccccgacc tccaaactgt tttctgaacg
     2041 ttgtattaat tgtctttgcc ctagaacatt acgcaccact acatcctgaa gaatgacttg
     2101 cccgggaagg gttaaattaa tgcgattggc agcggggttt ggccaaagtt ttatctggtc
     2161 taaaatgttt tgatcctcag cgcctaaagt ggtaaagtca tcgtaaagcc cttgcaataa
     2221 atcaataggt tctatccctg gactttgtgc tgggaccacg agtcgtaaat acggttctcc
     2281 tggagtgtca tcggcatgat atacgaccat ataagcggcc cttgacgagg taccactgct
     2341 caaacagcga ttatccgcgc cagggaaatt tgccccttga agcgccgcca taagtcgatc
     2401 ggcaagagtt ccggtagtgt ttagaaaatt aaattccatt tgatcaatga cactttgatc
     2461 cagcagtata ttcccttgga tactataggt cagaccctga cggtcttctt tgtaatcatc
     2521 ggtgagactt cccgtaaatc cagcgcttct ggcctcgcca gctaaatcaa aatcaacaat
     2581 accatactgg cgatattctg gattgaagtt ttgtgagccg caagcgtcat tgagcataag
     2641 ccaatcgata atctcttgag gactgtctcc tgtagccatg cgatccatcg cattttctaa
     2701 attgacattg ggaatacaga cataggcttg tgagtttaca ccgccgcgcc caggaatgat
     2761 gtccgtaatc cactgatccc aattgctgtt gttgaggtta atacaagacg ctccagcaga
     2821 accaatgtcg ccagtctcag ggtccaaagc aataatggaa aatgtatcct gcgcgtgaac
     2881 accaagactt aaggcgcaaa aaatactgaa taataatctt ttcatatacg gtaaattaaa
     2941 gtccggctcc agaggcaaga ccaattcctg ctgcaaaaac cccaataaag ataaggacat
     3001 aaagcgacaa caaaacaata gccatgatcc caataaattt gtaatgagcg gccaggtaga
     3061 tcaagccttg atctgtttcg tgctgatttc taagggtgag cccctgcctg gcgtgtgttg
     3121 cgaatttaaa aaggtaatac atgggcataa aataaattgc ggcaaaaacg aaataaatca
     3181 cagataatcc agccacttca gcccccatta tgctattccc gacaaaggct atagacaagg
     3241 caccgatgag cataaaagcc acgccaatga atcctaaaat actcaagaat tttgcccaat
     3301 aaatcacgcg atcaagcgag gctaaagtgt ctttggtcat gatgagcgat tggccgctaa
     3361 cgctatctgt gtgctgaggt tcgttatgtt ccnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnca tttgagttaa ttttatagtt aactatctcg
     3541 tattgtgtgt tttctttatt cgcccaagat cacgctgact gtctctatct tttaatgttt
     3601 ctcttttgtc gtagagtttt ttaccacgac aaagggcgat ttctattttg gcaagtcccg
     3661 aatcattgat gtataaatgt aagggaacaa tcgtcaggcc ggtgttttta accgcctttt
     3721 caagtttgtt gagttcgcga cgttgtaaca gtaatttacg cgccgatttt gcttgatgat
     3781 tgaaatggga ggcatgactg tattcttgaa tggtcatatt gatgacaaaa agctcgccgt
     3841 tgctaaattc gcaaaagctt tcagcaattg aggcttgtcc tgaacgcagg gnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nttatttctg tgcctttaag
     4081 gacaataccc gccgtaaagc gatcaatcac ctcataattg aagcgcgctt ttctattttt
     4141 tatgctgata ttttttgata aggccatgat tcgacaaaag taagaagatt gcttctttcc
     4201 tgctatcgaa cattcattat tctatatgaa ataagcgcaa agtagcggga ttcgatcgat
     4261 aatcaacgcg atataagcga ctatttaacg agtccggtat atcattgagc gtgtccatac
     4321 gcatcaaggt attggttaat tgaggaatcg tattgctatg acctacgatc agccaatgtc
     4381 cttggctaga acgcgtataa aagtcatcat taactaaatc caaaggctcg tagataatag
     4441 gatttaagga cttctgggct gccgttggaa tgatggtttg cagggttctc ttgtaggagg
     4501 tgctatagat acccgcgaga gggatgctgt caaaatactg ctgccatttt tgggctcgtt
     4561 caagtccagc agggatgagt tccgggtcct ttacttttgg attggcacgg tctttttctg
     4621 catgtctgat gagataatac actccagaga gcgccgtttc agaatctaca attgggttaa
     4681 ccgatgagtc agtttctatt ttactgtgat tttgacaacc aaaaataaat gcacttatga
     4741 gcagtatcga aagcgtatgt cgtgttgacc tcatgcaaaa ttaaattgtt ttaaaaaagc
     4801 ggcacgctgc tcaaaatttg cttcatccac cgaatgaagt gcttgttcaa atagggccat
     4861 taattcttcg ctgtgggtgg ttcgtttttg ctgtactaag tcaatatgga catattttcc
     4921 ccacatgacc gcctttaact ggcttttatt gtgattgaac atacgcagtt ctacatgggt
     4981 ttcagtgtca ctatatccta tgagctggct ctgcatgacg acttcttcca tcaggtgagc
     5041 aggccgcaga taggcaattt ggtttgagga aaccacccaa ctcttgccgc caagactttt
     5101 tacatcgtaa atattgatgc cgtaatgttt tacgagttga tcttcacggg cattaactaa
     5161 gtagtttaag taggccgcat tattgagatg attaaaaggg tcacagtctt gaaagcgcac
     5221 gagggcgcga ctttctagaa ttttatctgg tgtgttcaaa acgcaatttt ttcaaagcta
     5281 atcatttcaa actccttctt ttaagaaatg acgagatctt tttcgttgcg aaacaccaat
     5341 gcattgtcaa aacaatcaat caaaataatg ctatcggtct gcaattcgcc tgagagtatc
     5401 gatttggaca aggcattaag cacctcgcgt tgaatcactc gttttacggg gcgcgccccg
     5461 aactgagggt caaacccacg ttgcgccaac caggctttcg cctctggagt agcatctaag
     5521 gttatccctt gagcactgag taatttttga acggacttaa gttgaagttc cacgatactg
     5581 gctaaatcaa tttgggtcag gggttcaaac atgattatgt cgtcgatacg gtttaaaaat
     5641 tccggacgca cggtttgttt caggagtccc ataatgtcta ctttggcttt ctcgagtgcg
     5701 gtttgattat gaccgagatc ctcaatagac tgctcaatga cgccactccc aagatttgaa
     5761 gtcatgacaa tgatgctatt tttaaagtca gccagtcgtc ctttattgtc tgtaagtcgc
     5821 ccttcatcaa gaacttgcaa aaggacgtta aacgtatctg ggtgnnnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6121 nntggtattc gctcatatca attcgtgtga tcgcgttttc gtcatcaaat aaatactcag
     6181 ccaaggcttt agctagctcc gtttttccca cccctgtggt gcctaaaaaa agaaatgagc
     6241 caatgggttt tttcgcatct tgtaatcctg cgcgactgcg tcggatgaga tcggaagagc
     6301 gtcgtgtagg gaaaga
//
LOCUS       DPUP01000037            2560 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_37544,
            whole genome shotgun sequence.
ACCESSION   DPUP01000037 DPUP01000000
VERSION     DPUP01000037.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2560)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2560)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2560
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1445
                     /locus_tag="DHV98_01305"
     CDS             <1..1445
                     /locus_tag="DHV98_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_354746.1"
                     /note="DppABCDF is involved in the transport of
                     dipeptides; also binds heme and mediates chemotaxis to
                     dipeptides; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCK05028.1"
                     /translation="SRPIYNRLAEFERGTTNVIPGLATSWTSSDDGLEYTFNLRAGVK
                     FHSTDFFSPTREFNADDVVFSFDRQRNESDPWFKYTEGTAWEYFNGMDMPSLIKDIVK
                     VDDMTVKFVLNRPESPTVANLAMDFASIVSKEYADKLQASGNMSDLNQKPVGTGPFKF
                     LAYQKDAVIRFKAHEDYWAGKQPIDDLVFAITTDNSVRTQKLLAGECDVAPYPNPADI
                     ASLKANSNLTVLEQEGLNIGYLAYNTQVAPFDNVNVRKALNMAINKEAILEAVFNGAG
                     KAAKNPIPPTMWSYNNSISDDKFDPEASKKMLADAGISNLKMKIWAMPVARPYNPNAR
                     RMAELLQSDFANVGVEVEIVSYEWGEYLKISKDVTRDGAVLLGWTGDNGDPDNFLSVL
                     LSCSGVGASNRAQWCNKEFDDLTNQAKQISDQAERTKLYEAAQVVFKREAPWATIAHS
                     MVFMPMSNKVKNYKMDPLGSHRFDGVDIDK"
     assembly_gap    1714..1821
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1822..>2560
                     /locus_tag="DHV98_01310"
     CDS             <1822..>2560
                     /locus_tag="DHV98_01310"
                     /inference="COORDINATES: protein motif:HMM:PF00557.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HCK05029.1"
                     /translation="ASFSTLAFDGLVFDWRDETGYEDAFTSAALSLPQLAGHCHIGLE
                     ARRMRVFEKMVLQNVFPKADFSDAHEMISSIRVRKSADEVTYLKKAIKISEAALESTL
                     LEIFIGQTEKEIESILLQKLFSHGADGLSFDPIVAAGDNSAQPHAQARESYKLKRGDA
                     LLIDFGAKYKGYNADITRTFFIGEVSDFDRAFYNTVLDANRTGIAATRAGVSAHFIDD
                     TVQCCLEESKFSEFKRHKTGHGLGLDVH"
BASE COUNT          725 a          504 c          550 g          673 t
ORIGIN      
        1 catcgaggcc tatttataat cgtcttgctg aatttgagcg tgggacaacc aatgtaatcc
       61 ctggactggc cacaagctgg acctcatctg atgatggcct ggagtacaca tttaacctgc
      121 gcgctggtgt taagtttcac tccactgatt tctttagtcc tactcgtgag ttcaacgctg
      181 acgatgtagt attttcgttt gataggcagc gcaatgaatc cgatccttgg tttaaatata
      241 ccgagggaac ggcctgggaa tacttcaacg gaatggacat gccttctttg atcaaagaca
      301 tcgtcaaagt tgatgatatg acggtcaagt ttgtactaaa ccgtccagag tcaccaactg
      361 ttgctaattt agccatggac tttgcatcaa ttgtttcaaa ggaatatgct gataaattac
      421 aagcttcagg caatatgagc gatctaaacc aaaaaccagt tggcacgggt ccttttaaat
      481 tcttggctta tcaaaaagat gctgtaattc gatttaaagc gcatgaagat tactgggcag
      541 gcaagcaacc aatcgacgat ttggtatttg caattacaac cgataattcg gttaggacgc
      601 aaaagttact tgctggcgag tgcgacgtcg caccttaccc taatccagca gatatcgctt
      661 cgctgaaagc aaatagcaat ttgactgtat tggaacaaga aggattaaat attggatatc
      721 ttgcatacaa tacacaagta gcaccgtttg ataatgtaaa tgtgcgcaaa gctcttaata
      781 tggcgatcaa caaggaggcc attttagaag cggtatttaa tggagctggt aaagcagcta
      841 aaaatccgat tcctccaaca atgtggtcat acaataattc aatttcagat gataaatttg
      901 accctgaggc ttccaaaaaa atgcttgcgg atgcgggcat ttctaatctg aagatgaaaa
      961 tatgggctat gcctgtcgca cgcccttaca acccaaatgc acgccgtatg gcagagttac
     1021 tacaatccga ctttgctaat gttggagtgg aagtagaaat tgtctcctat gagtggggag
     1081 agtacttaaa gatttcaaaa gatgtaacac gtgacggcgc agtgttgctt ggttggaccg
     1141 gtgacaatgg tgatccagat aatttcctgt ctgtattgtt gagctgttcc ggcgttggag
     1201 cctcaaaccg tgcacaatgg tgcaacaaag agtttgatga cctaaccaat caagctaaac
     1261 aaatttccga ccaagctgaa cgcaccaaac tatatgaagc agcgcaggtt gtattcaagc
     1321 gtgaagctcc gtgggctact attgcacact caatggtgtt tatgccgatg tcgaataaag
     1381 tgaaaaacta caagatggat cctttgggaa gccatcgttt tgatggcgtt gatatcgaca
     1441 aataaacgcc acaataaata ttaaaataat aatagaacta ataattaacg tgtctgggcg
     1501 atctttcgcc cagacacact tttaaaggat actacatgca aggcccagat ttttcttcca
     1561 ttctcgcagc catacgcaat acccatctag atgcagtggc atttgttcct gggcccaatt
     1621 ttagaagact attcgcacga gactttcatt tgatggagcg acctctggta attttacttc
     1681 caaccaaagg taagccggtg gcagtggttc ccgnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn ngcctctttc tcaactctgg ctttcgatgg tttagttttt
     1861 gattggcgcg atgaaacagg atacgaagac gcatttacca gcgcagcgtt atcactgcca
     1921 caactagcag ggcattgcca cattggcctt gaagcacgaa gaatgcgggt atttgaaaaa
     1981 atggttttgc agaatgtgtt tcccaaggca gactttagtg atgcccatga aatgatttca
     2041 tctattcgtg tccgaaaaag tgctgatgaa gttacctatt taaaaaaagc gatcaaaatt
     2101 tccgaagctg cgcttgagag caccctacta gagattttca taggtcaaac agagaaagaa
     2161 attgaatcaa tattgttgca gaaactgttt agccacggcg cagatggcct gtcttttgat
     2221 ccaattgttg cggcaggtga taattcagct caacctcatg cgcaagcgcg tgaaagttat
     2281 aaacttaagc gtggtgatgc tttattaatc gattttgggg caaaatataa aggctacaat
     2341 gcagacataa cacgcacatt ttttataggt gaagtttctg acttcgaccg agcattttac
     2401 aacacagtgc tcgatgctaa ccgtacggga atagccgcaa ctcgggcagg tgtgagcgca
     2461 cattttatcg acgatactgt ccaatgctgc cttgaggaat ctaaattttc agaatttaag
     2521 cgtcataaaa caggtcatgg cctggggctg gatgttcatg
//
LOCUS       DPUP01000038            7041 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14036,
            whole genome shotgun sequence.
ACCESSION   DPUP01000038 DPUP01000000
VERSION     DPUP01000038.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7041)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7041)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7041
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..850)
                     /locus_tag="DHV98_01315"
     CDS             complement(<1..850)
                     /locus_tag="DHV98_01315"
                     /inference="COORDINATES: protein motif:HMM:PF17116.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5103 domain-containing protein"
                     /protein_id="HCK05030.1"
                     /translation="MWRVYLMLLGFFGLGVIQAQTLEKTEPLYIKSIQFQGGSQQAQL
                     PVVKLGESISLSFDDLRGTEEDFYYQITHHNFDWTPSDLSKGEFMDGFDDVRIEQYLN
                     SLNSLQLYSHYEVRFPNRETRGFKKSGNYMIHLYDDDGNLLFTRKFMIVEEQVGVGVS
                     VKRSRDLRHINEKQAIQFTVYPNDVLLINPNESVKTVIVQNNNLRRVIDNLIPQYTMG
                     RDLIYRYDKEASFWGGNEFLNFDSKEARVANVGIRRVELNEVFEHYLYTQNPRAKRPY
                     TFNPDVN"
     assembly_gap    970..1043
                     /estimated_length=74
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1135..>2111
                     /locus_tag="DHV98_01320"
     CDS             1135..>2111
                     /locus_tag="DHV98_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit A"
                     /protein_id="HCK05031.1"
                     /translation="MSRDIKIKKGLNINLKGEAEKTLSKAPRAKVFALRPENFHLVTP
                     KLTVKEGAKIKAGEVLFYDKKQESVTFVSPVSGTLKSVERGPKRVITQLTIEADLKDE
                     FLAYQPFDVENADAEAIKAHLLASGCWPFIMQRPYHIIARTNKTPKAIFISGYTTAPL
                     AADLDFALIGKEDDLQLAITALSKLTTGSVHVGVGQDSNSPLRAMKDCVLHNVSGPHP
                     AGNVGVQIAQIDPVNKGEVVWTVSAQDLVVIGELLRTGKFNAERVVALAGSSLGAPQY
                     YTAKIGSAVAPLIQEAQLAESHSRVISGEVLTGSTIGHEGYLGYYDNTI"
     assembly_gap    2112..2234
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2235..2597
                     /locus_tag="DHV98_01325"
     CDS             <2235..2597
                     /locus_tag="DHV98_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit A"
                     /protein_id="HCK05032.1"
                     /translation="GDDYEFFGWNKPVFDKVSTTRALTFSWLQPKKKFALTTNTNGEH
                     RAFVVTGNYEEVFPMDIYPLQTLKACMVKDLDQMEVLGMYELAPEDFALTEFVCVSKQ
                     PHQRIIREGLDLMFNEIG"
     gene            2600..3826
                     /locus_tag="DHV98_01330"
     CDS             2600..3826
                     /locus_tag="DHV98_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HCK05033.1"
                     /translation="MALKETLHNLKEKHKGQKMAPAFNAIHTFLYAPNETTHGGTHIK
                     GADDLKRTMNTVIMALVPCLVFGMFNAGYQHYMAIGEGVAAAGDFFSTAFWNWDNLVF
                     GAWKVLPLVAVSYIVGLTVEFIFAVIKGHEVEEGYLVTGMLVPLIVPVDIPLWMLTVA
                     VVFGVVIGKEVFGGTGMNILNPALTIRAFLFFAYPTWMSGDKVWVAGAQERASQIASG
                     LELDSISGETILGTLAQNKTVDYDLWDMFLGFIPGSVGETSTILILLGGLFLVFTKIG
                     SWRIMLSAVIGALVMGMMFNGVVDAGWIDSSSKFYSLMSTPFWVHLIIGGLAFGIVYM
                     ATDPVTASQTNKGKWIYGFLIGFISVLIRVFNPAYPEGVFLAILLMNVFAPTIDHYVI
                     QANVKRRMNRLKVKNA"
     gene            3828..4574
                     /locus_tag="DHV98_01335"
     CDS             3828..4574
                     /locus_tag="DHV98_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HCK05034.1"
                     /translation="MAINTDKNSYTVIFAIVMVVIVGSILAGLFMLFRPQIEANERFE
                     KQQNILYAMGINNNQGANDVVFIPTTEVEGEFQKYITRQVVLQGDEVIEDNEAFLIDI
                     KKEATKAADPDYKRRLPLFQGQVDGKEVYVVPVRGKGLWDAIWGFVAMDKDMVIQGVY
                     FDHKGETPGLGAEIKQRYFMDDFQGEGFLVDGQFAPITVAKGNNDPKNNLKNDQEVDA
                     LAGATITGDGLSAMLKKDIRLYVPFFKTLN"
     gene            4581..5228
                     /locus_tag="DHV98_01340"
     CDS             4581..5228
                     /locus_tag="DHV98_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HCK05035.1"
                     /translation="MGLLSKKDSKLIFDPLADNNPITIQVLGICSALAITAQLKPSIV
                     MALSVIFVLGMGNVVISLMRNIIPSKIRIIVQLIVVATLVIIVDLVLKAFAYELSKEL
                     SVFIGLIITNCIIMGRFEAFALGNGPWRSFLDGVGNALGYGVILIIVGFFRELLGSGT
                     LFGFKVLGDSVEKTRLYALGYENNGFMVLPPMALIVVGIIIWVQRSRNKELIEEL"
     gene            5277..6020
                     /gene="nqrE"
                     /locus_tag="DHV98_01345"
     CDS             5277..6020
                     /gene="nqrE"
                     /locus_tag="DHV98_01345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HCK05036.1"
                     /translation="MEHLELFFKSIFVDNMVFAYFLGMCSYLAVSKKVSTAVGLGAAV
                     IFVLTVTVPLNWLLDQYILQRGALVWLGPEYADYDLSFLSFILFIATIATMVQLVEIV
                     VEKFSPSLYNSLGIFLPLIAVNCAILGGSLFMQSREIETLGLALNYGFSSGIGWFLAI
                     LAIAAIREKIRYSNVPAPLRGLGITFIITGLMAIGFMSFGGMLTGGDDAAQEVEVASV
                     EMPVNEMSNTEASEVVSQETESEVNETIE"
     gene            6022..>6509
                     /locus_tag="DHV98_01350"
     CDS             6022..>6509
                     /locus_tag="DHV98_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008635987.1"
                     /note="uses the energy from reduction of ubiquinone-1 to
                     ubiquinol to move Na(+) ions from the cytoplasm to the
                     periplasm; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HCK05037.1"
                     /translation="MILASTLGVILATVAAFLVLILLLVALLLFTKEKLSPSGPVTIT
                     INGERKIEVASGGTLLSTLGNQKVFLPSACGGGGTCIQCECHVLEGGGEALPTETPHF
                     TRKELQHGARLACQVKVKQNMSIQIPEEIFGIKKWEATVVRNYNVASFIKEFVVEIPE
                     DM"
     assembly_gap    6510..6701
                     /estimated_length=192
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6702..>7041
                     /locus_tag="DHV98_01355"
     CDS             <6702..>7041
                     /locus_tag="DHV98_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008635987.1"
                     /note="uses the energy from reduction of ubiquinone-1 to
                     ubiquinol to move Na(+) ions from the cytoplasm to the
                     periplasm; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HCK05038.1"
                     /translation="EIPEDMNYKAGGYIQIEIPPCEIKYSDIDITAHPEEHETPDKFQ
                     AEWDKFGLWPLVMKNIESVERAYSMASYPAEGREIMLNVRIATPPWDRAKNGWMDVNP
                     GIASSYIFAQK"
BASE COUNT         1829 a         1295 c         1571 g         1957 t
ORIGIN      
        1 cattgacatc gggattgaat gtataggggc gtttggcacg cgggttttgt gtgtatagat
       61 aatgttcaaa gacttcgttg agttcaacgc gcctgatgcc tacattcgcc acccgcgctt
      121 ctttgctatc aaaattcaag aactcattgc ccccccaaaa tgaggcttct ttatcgtaac
      181 gataaatcag atctcgcccc atcgtatatt gaggaatcaa gttgtcgata acccgacgga
      241 gattgttgtt ttggacaata accgttttta ccgattcgtt tggattgatc agcaatacgt
      301 cattggggta aacggtaaat tgaatggctt gtttttcatt gatatggcgg agatcacgag
      361 aacgcttaac ggaaacaccc acaccaactt gctcttcaac aatcatgaat tttcgcgtga
      421 acaacaaatt gccgtcgtca tcgtataaat gaatcatata attgccactc tttttaaatc
      481 cccgtgtttc gcgattagga aaacgcactt cgtagtggga gtagagttga agactattca
      541 acgaattgag gtactgctcg attcgaacat catcaaatcc gtccataaat tcgcctttgg
      601 agagatcgct cggtgtccaa tcaaagttgt gatgcgtgat ttgatagtaa aaatcttctt
      661 ctgttccccg taaatcgtca aagctcagac tgatcgattc ccccaatttt accacgggta
      721 attgcgcctg ctggcttccg ccctgaaact gaattgattt tatgtacagg ggttcagttt
      781 tttctaaagt ttgagcctga attacaccca ggccaaagaa ccccagaagc atgagataaa
      841 cgcgccacat agattaaaaa tttctctaat atagctaaaa atctacagtt aaattagggt
      901 caaaataagg cacgtttaaa cgtcctgaaa tttatcttcg attattatgg aaagcggctt
      961 ttaatttctn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnggaaagc ggcttttaat ttctaaattt gcagtcccaa
     1081 aatcgctctt ttttgcgatc gcggcaccaa aaaaagaacg ctaatactac atccatgtcc
     1141 agagacatta agattaaaaa gggtcttaat atcaatttaa aaggtgaagc ggaaaaaaca
     1201 ctttcaaagg cgcctcgcgc aaaagtgttt gctttaagac ctgaaaactt tcacctcgtt
     1261 actccgaaac ttactgtaaa agaaggcgcc aaaatcaaag ctggcgaggt tctattttac
     1321 gataaaaaac aagagtctgt aacttttgtg agtcccgtga gtgggacgct taaaagtgtc
     1381 gagcggggtc ccaagcgggt catcacccaa ttgactattg aggctgacct caaggatgag
     1441 tttttggcat atcaaccttt tgacgtcgaa aacgccgacg cagaagccat caaggcgcat
     1501 ttgttggcca gcggttgttg gcctttcatc atgcaaaggc cttatcatat catcgcccga
     1561 acaaacaaga cgccaaaagc gattttcatc tcaggatata ccacagcgcc tttggcagca
     1621 gatttggatt ttgccttaat cggcaaggaa gatgatttac aattggccat tactgccttg
     1681 agtaaactta ctacaggttc tgttcatgtt ggtgtcggcc aagacagtaa ttctccgctt
     1741 cgcgctatga aggactgtgt cctgcacaat gtttctggac cgcatccggc gggaaatgtt
     1801 ggggtacaga tcgcacagat tgatcctgtg aataaaggcg aagtggtttg gaccgtttct
     1861 gcccaagact tagttgtgat tggtgaactt ttgcgcaccg gaaaatttaa cgctgagcgc
     1921 gttgtcgctt tggctggttc ttcgttaggt gctcctcaat actacacagc caagattggt
     1981 tctgctgtag cgcccttgat tcaagaggcc caattagctg agtcccattc tcgtgtcatt
     2041 tcaggtgaag tgctcacggg aagcacgatt ggtcacgaag gatatttggg ctattacgac
     2101 aataccattt gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnggagat gattacgaat tttttggttg gaacaaacct gtatttgaca
     2281 aagtctctac cacaagagcc ttgacatttt catggttaca acccaagaaa aaattcgccc
     2341 tgaccacaaa cacgaacggg gagcatagag cttttgtagt gactgggaac tacgaagaag
     2401 tattcccgat ggatatttat ccattgcaaa cccttaaagc gtgtatggtt aaagaccttg
     2461 atcaaatgga agtccttggc atgtatgaat tggctccaga agattttgct ttaactgaat
     2521 ttgtatgtgt atcgaaacaa ccacaccagc gcattattcg agaaggactg gatctcatgt
     2581 ttaatgaaat aggataacta tggcactgaa agaaacctta cacaatttaa aagaaaagca
     2641 taaaggacaa aaaatggcgc ctgcctttaa tgccattcat acttttttat acgccccaaa
     2701 tgagactaca catgggggga cccacattaa aggggcagat gatttgaagc gaaccatgaa
     2761 cacagtgatc atggcgctag taccatgtct tgtatttgga atgttcaatg caggttacca
     2821 acattatatg gccattggtg aaggcgttgc cgctgccggc gattttttta gcaccgcatt
     2881 ttggaactgg gataatttgg tttttggggc ctggaaagta ttgcctttag tcgccgtatc
     2941 ctatatcgtg ggattgacgg tcgaatttat ttttgctgtg atcaaagggc atgaagttga
     3001 agaaggttat ttggttacgg ggatgcttgt gccgcttatt gtccctgttg atattccctt
     3061 atggatgttg actgtggcgg tcgtttttgg cgtcgttatc ggaaaagaag tctttggagg
     3121 tacgggaatg aatattttga atcctgcgct tacgattcgt gcatttttgt ttttcgccta
     3181 tcctacatgg atgagtgggg acaaagtatg ggtcgctgga gctcaagaac gtgcgagtca
     3241 aatcgcttct gggcttgaat tagactctat ttctggggaa accattttag gaaccttggc
     3301 gcaaaacaaa actgtggact atgacctttg ggatatgttc ttaggattca taccgggttc
     3361 tgttggggaa acttctacaa tactcatttt gcttggcggt ttatttttag tctttactaa
     3421 aatcggtagc tggcgcatta tgctttctgc cgtgatcgga gccttggtca tgggaatgat
     3481 gtttaacggt gttgtggatg cgggatggat cgatagttca agcaagtttt atagcctaat
     3541 gagcactcca ttttgggttc atttaatcat tggtgggtta gcgtttggta ttgtatacat
     3601 ggccacagat cctgtaacgg cgtctcaaac caacaaaggg aagtggattt atggattttt
     3661 gatcgggttt atttcggtat tgatccgagt cttcaatcca gcctatcccg agggggtctt
     3721 tttggccatc ttgttgatga acgtatttgc cccgaccatt gatcattatg tgattcaagc
     3781 caatgtcaaa agaagaatga atcgtttaaa agttaaaaac gcgtaagatg gcgatcaaca
     3841 cagataaaaa cagttatacc gtaatttttg ccatcgtcat ggtggtgatt gtgggctcta
     3901 ttctggccgg tctatttatg ttgttccgac cacaaatcga ggccaatgag cgatttgaaa
     3961 aacaacagaa catcctctac gctatgggca tcaataacaa ccaaggcgcc aatgacgtcg
     4021 tatttattcc cacgacagag gtagagggtg aattccaaaa atacatcacc cgtcaggtag
     4081 ttctgcaagg cgatgaggtg atcgaggata atgaggcatt tttgattgac ataaaaaagg
     4141 aagccaccaa agcagcagat cctgattaca aaagacgctt gcctttattt caaggtcaag
     4201 tcgatggcaa ggaggtctat gtggtgcctg tgagaggaaa agggctttgg gatgcgatat
     4261 ggggcttcgt tgctatggat aaggatatgg taatccaagg cgtttacttt gatcataaag
     4321 gagaaacacc agggcttggt gctgagatca agcagcgtta ttttatggat gatttccaag
     4381 gagaaggatt tcttgtcgat ggacaatttg cgccgattac tgtagctaaa ggaaacaatg
     4441 acccaaagaa caacctaaag aatgatcaag aagttgacgc tttggccggg gccaccatta
     4501 caggagatgg ccttagtgca atgctcaaaa aagacattcg tttgtatgtg cctttcttta
     4561 aaacattaaa ctaaaatctt atgggactgc tctctaaaaa agattctaaa ctgatttttg
     4621 atccgcttgc ggacaacaac ccaatcacga tacaggtcct tggtatctgt tccgcattgg
     4681 cgattacggc ccaattgaag ccttctattg tcatggcgct atcggtaatt tttgtactgg
     4741 gtatgggtaa tgtagtgatt tcgctcatgc gtaatattat cccttctaaa atccgaatta
     4801 tcgttcagct tattgttgtg gctactttgg tcattattgt tgatttagtc ctgaaggcct
     4861 ttgcctatga gttaagcaaa gagctctcgg tatttatcgg actgatcatt accaactgta
     4921 tcatcatggg gcgctttgaa gcttttgccc ttggtaatgg cccatggcgt tcgtttttgg
     4981 acggcgttgg aaatgccttg gggtatggag tcattttgat catcgtaggg tttttcagag
     5041 aattattagg atcagggacg ctatttggct tcaaggtcct aggagattct gttgagaaga
     5101 ctcggcttta tgccttgggt tacgaaaaca atggatttat ggtattgcct ccaatggcgc
     5161 ttatcgtggt gggtattatc atttgggtgc agcgttcacg caataaagaa ttgatcgaag
     5221 aactataaaa tatagcctgt tgattggggc tcgtcctgat caaaatcaaa agatatatgg
     5281 aacatttaga attatttttt aagtcgattt ttgtagacaa catggtgttt gcctacttcc
     5341 ttgggatgtg ttcttatttg gcagtatcca aaaaggtaag tacggcagta ggactgggag
     5401 cagcggtcat ttttgtgttg accgtgaccg tacccctaaa ctggctatta gatcagtaca
     5461 tcttacaacg cggggcgctt gtatggctag gtcctgaata cgcggactat gatttgagct
     5521 ttttatcctt tattttattt atcgcgacca tcgcgaccat ggtacagctc gtagagatcg
     5581 ttgtagagaa attttctcct tctttgtata actccttggg gattttctta ccgcttattg
     5641 cagtaaactg tgcgattctt ggtgggtcac tatttatgca atctcgagaa attgaaacct
     5701 taggcctcgc tttaaactat ggatttagct caggaattgg ctggttttta gccattttgg
     5761 ccatagccgc aattcgcgaa aaaatccgtt attccaatgt tccagcgcca ttgcgcggat
     5821 tgggaattac atttatcata accggactta tggccattgg gtttatgagt tttggaggaa
     5881 tgctcactgg aggtgatgat gccgctcaag aagtcgaggt ggcctctgta gaaatgcctg
     5941 taaatgaaat gtctaacaca gaagcttctg aagtggtgtc ccaagagacc gaatctgaag
     6001 taaatgaaac gatagaataa gatgatctta gccagtacac ttggagttat tttagcaaca
     6061 gttgccgcat ttttggtatt aatcctattg cttgttgcgc tgctgttgtt taccaaagaa
     6121 aaattatccc cgtcaggacc ggtgaccatc accattaatg gggaaagaaa aatcgaagtg
     6181 gcctcaggag ggaccttatt gtcaacctta gggaaccaaa aagtgttttt accttccgct
     6241 tgtggcggtg ggggtacttg tattcaatgt gagtgccatg tccttgaagg aggcggggaa
     6301 gccttgccta cggaaacccc acattttacc cgtaaagagc tccaacatgg ggcgcgtttg
     6361 gcgtgtcaag ttaaagtaaa gcaaaacatg tccattcaga ttccagaaga aatttttgga
     6421 atcaagaaat gggaggctac ggtcgtgcgt aattataatg tggcgtcgtt cattaaagaa
     6481 tttgttgtag agattccaga agacatgaan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngagattcca gaagacatga
     6721 attataaagc aggagggtat attcaaattg aaataccacc atgtgaaatt aagtattcgg
     6781 atatcgacat tacggcgcac ccagaagagc atgaaactcc ggataaattt caggcagaat
     6841 gggacaagtt tggtctttgg ccccttgtga tgaagaacat agaaagcgtg gagcgcgctt
     6901 attctatggc gtcttatccc gcggaaggac gtgagattat gcttaacgta cgtattgcca
     6961 ccccaccatg ggatcgtgca aagaatggat ggatggatgt gaatcctgga attgcatcgt
     7021 cttatatttt tgcccagaaa c
//
LOCUS       DPUP01000039            4337 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11370,
            whole genome shotgun sequence.
ACCESSION   DPUP01000039 DPUP01000000
VERSION     DPUP01000039.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4337)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4337
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..346)
                     /locus_tag="DHV98_01360"
     CDS             complement(<1..346)
                     /locus_tag="DHV98_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05039.1"
                     /translation="MKKIQMVDLQGQYAEIKDLVTVSMQGVIDTASFINGPEVQSFQK
                     ELEAYLGVKHVIPCANGTDALQIAMMGLGLKPGDEVITADFTFAATVEVIALLGLTPV
                     LVDVDPINFNIDL"
     gene            438..1358
                     /locus_tag="DHV98_01365"
     CDS             438..1358
                     /locus_tag="DHV98_01365"
                     /inference="COORDINATES: protein motif:HMM:PF04413.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05040.1"
                     /translation="MGQIIYNSLSFFGQLLLRPLQWVGSEKLRAFWNGRGNTWAQLNT
                     LDPANPNRLWMHCASLGEFEQGRPILEWLRQKYPEHQIVLSFFSPSGFAPKQKTPLAD
                     LVVYLPWDSPSNAKSFVELIAPSAAYIVKSDLWPNYLIQLRKRNISTYVIAARFKTKH
                     WIFGPAGGFMRAHLLGLTHIFVQDQASLDLLKKHGINQSSLSGDTRFDRVWAQTKQDN
                     RLDFLQVFKTDEPCVILGSSWPEDHDLWISSINQFSQRGVRFIIAPHDLNPTEIHRLQ
                     SXXMRGLQWNNHTRPYFCACAHYQHNWASL"
     gene            1378..1677
                     /locus_tag="DHV98_01370"
     CDS             1378..1677
                     /locus_tag="DHV98_01370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05041.1"
                     /translation="MAYVGGGMGHSGLHNILEPAAFGLPVIIGPVYDKFPEAIALTER
                     KGVQVVSQEQDVREIMDRWLSDSTDFKLMGAVNRDYIQQQSGATKHIISKLESMD"
     gene            complement(1684..2454)
                     /locus_tag="DHV98_01375"
     CDS             complement(1684..2454)
                     /locus_tag="DHV98_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008990864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCK05042.1"
                     /translation="MKQQLSIEIRRFKKIREDQGHTQQSFAKILGIKGSTADIERGKT
                     KITGSVVMELLHQFGINPLWLFGKSHEMNLSLDQTNVQPKVIAVDPHGEDTILLVNQK
                     AAAGYPHNIQDVTWVGSLPAFHMPLPEFRNATYRGFQVEGDSMLPNIRPKEWVLGRAV
                     GHIAEASDRKIYIVVLHDSVLVKKLEKINGMPHKVRLVSLNPEYLPIEVATKDIQELW
                     QVNSKLTFGLEEPSESTLLRQLQESMNELKGQINRLNQ"
     gene            2600..2785
                     /locus_tag="DHV98_01380"
                     /pseudo
     CDS             2600..2785
                     /locus_tag="DHV98_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778764.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing stop; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2940..3572)
                     /locus_tag="DHV98_01385"
     CDS             complement(2940..3572)
                     /locus_tag="DHV98_01385"
                     /inference="COORDINATES: protein motif:HMM:PF13505.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05043.1"
                     /translation="MGEISVSLFINQKQQHMKKLIFLMVALVSFGAMAQDSKAYLALN
                     VGASFPGGDIADDAELGTGFDFNVNFGYRFTESIGATLTYGAAASTFEDDGGDTAAFG
                     AGYLGAGPMYTVALGDNIAWDIKPQYVFSLAGVADYEGGDFDSTLKGNGWMLGQSFVF
                     GFDQGFKFSVNLDYLNGKYNSVEVDGESFDIDSDNTYSHFTIGVGARYNF"
     gene            3766..3969
                     /locus_tag="DHV98_01390"
     CDS             3766..3969
                     /locus_tag="DHV98_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002568452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05044.1"
                     /translation="MHEKVAQRIKQLRLKNGLSQEGLSHLAELDRKYIGIIEKGHTNV
                     SIQVLSQICEALDISLSEFFRGF"
     gene            complement(4141..>4337)
                     /locus_tag="DHV98_01395"
     CDS             complement(4141..>4337)
                     /locus_tag="DHV98_01395"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010855534.1"
                     /note="catalyzes the formation of L-tryptophan from indole
                     and L-serine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TrpB-like pyridoxal-phosphate dependent enzyme"
                     /protein_id="HCK05045.1"
                     /translation="TAIAEAEKCKEEGVSRTILLNLCGHGNFDMKAYQDYFAGKIVKH
                     ELTQEEINRSIAKLQTPLIP"
BASE COUNT         1258 a         1000 c          864 g         1213 t
ORIGIN      
        1 ctaaatcgat attaaaatta ataggatcca catcgaccaa aactggggtt aatcccaata
       61 aggcaatcac ctctacggtc gctgcaaagg taaagtccgc cgtaatgacc tcatcgcccg
      121 gttttaagcc caggcccatc atggcgattt gcagtgcatc ggtcccatta gcacagggaa
      181 tgacatgctt caccccgagg taggcctcta gttccttttg aaaggactgt acttcaggac
      241 cattaatgaa actcgccgta tcaataaccc cttgcatcga aacggtcact aggtccttaa
      301 tttcggcata ctgaccctga aggtctacca tttgtatttt tttcatttgg cgcgatttga
      361 atgggtcaaa actacgaaaa attgacctac aagcgtcacg gaattgggca aagaaccgta
      421 atttagcctc aaagcatatg ggtcaaatca tttacaattc actgagtttt ttcggccaac
      481 tcctgttacg cccattgcag tgggtaggct ctgaaaagtt acgcgcgttt tggaacggcc
      541 gcggcaatac ttgggcccaa ctcaacacgc ttgaccctgc taaccccaat agactttgga
      601 tgcattgtgc ctcattggga gagtttgaac aggggcggcc catattggaa tggctgcgtc
      661 aaaaataccc cgagcaccag atcgtactga gctttttttc gccctctggt tttgccccca
      721 aacaaaagac ccctctagcc gatttggtgg tctatctccc atgggatagc ccgagtaacg
      781 ctaaatcatt tgttgaatta atcgctccga gcgcggccta cattgttaaa agtgatttgt
      841 ggcccaatta tctgatacaa ttacgaaagc gaaacatctc gacctatgtc atcgcagccc
      901 gttttaaaac gaaacattgg atttttggac ctgctggggg atttatgcgc gcgcatcttt
      961 tgggcttaac ccacattttt gttcaagatc aagcctctct tgacttactt aaaaaacacg
     1021 gcattaatca atcgagtctt tctggtgaca cgcgctttga tcgtgtttgg gcacaaacaa
     1081 agcaagataa tcgtttggat tttcttcaag tctttaaaac cgatgagcct tgtgtgattt
     1141 taggcagttc ctggccagag gaccacgacc tttggatttc gtccattaac caattttccc
     1201 aaagaggggt gcgttttatc atagcgcctc atgatttgaa tcctactgaa attcacaggc
     1261 ttcagagtaa nnccatgcgc ggtttacaat ggaacaatca cacccgacct tacttctgcg
     1321 cgtgtgctca ttatcaacac aattgggcat ctctctagag cttacgcgag tgcggatatg
     1381 gcttatgtcg ggggcggcat gggccatagt ggtttgcaca atatcctaga accagcggct
     1441 tttggcctac ccgtaatcat tggaccggtt tatgacaaat ttccagaggc aatagcgttg
     1501 actgagcgca aaggagttca agtcgtgtca caggagcaag acgttcgtga aatcatggac
     1561 cgatggctca gtgattcgac agactttaaa cttatggggg cggtaaatcg agattatatt
     1621 caacaacaat ctggagcgac aaagcacatt atcagtaaac ttgagtcaat ggactaatcc
     1681 catttattga ttcaggcggt tgatttgtcc tttgagttca ttcatcgatt cttgcaactg
     1741 ccttaaaagc gtgctttcac tcggttcttc caaaccaaag gttaatttac tattgacctg
     1801 ccataattct tgaatgtctt ttgtagccac ttcgatgggc aggtattctg gattaaggga
     1861 gaccaggcgt actttatgag gcatcccatt gattttttct aattttttaa ccagtactga
     1921 atcatgaagg accacaatat aaatttttcg atctgaggcc tcggcgatat gccctaccgc
     1981 acgtcccaag acccattcct ttgggcgaat attcggcaac atactgtctc cctcaacttg
     2041 aaagcctcga tacgtcgcat tgcgaaattc cggcaaaggc atgtgaaaag ccggtaaact
     2101 cccgacccag gttacatcct gaatattgtg cggatagccc gcagccgctt tttggttgac
     2161 taacaatata gtgtcttccc catgtgggtc aaccgcgatg acctttggct gaacattggt
     2221 ttgatccaga cttagattca tctcgtgact ctttccgaag agccataatg gattaatgcc
     2281 aaactgatgg agcaactcca taaccacgga acccgtaatc ttagttttcc cacgctcaat
     2341 atccgcggta cttcctttta tccctaaaat cttcgcaaag gattgttggg tatgcccctg
     2401 atcttcgcgt atttttttga atctccggat ttcaattgat aattgttgct tcattggcta
     2461 aaaatacata taatttggaa atattccaat ttaaaaaagg aaatattcca ttaaaattta
     2521 tccctaactc cctagctttc aatagataaa ttattctatc tttgttccac ggaaaattta
     2581 accactaaat taattaacta tgaaaaaagt attaatcact tttgctgctt tagcgatgat
     2641 cgcttcagtt acttcatgta gagagactga acaaaaaacc gaagaagctg ttgaagctgc
     2701 tgttgaggca aacactgatg ccgttgagga agctggtgaa gctaccgagg aggctgcaga
     2761 cgctgtagaa gaaggtgctg aagaagctac tgacgctgca gaaggtgcta tggaagatgc
     2821 agctgaggct gttgaaggcc acgacgctga cgcacactaa gatagaacac ttagcaacaa
     2881 aaaaccctca cgattgtgag ggtttttttg tttatgacac ttaaatatgt gctcgtgatt
     2941 tagaaattat atcgagcacc tacaccaatg gtgaaatgtg agtaagtatt atcactgtcg
     3001 atatcgaacg attctccatc cacttcgaca gaattatact ttccgtttag ataatccaga
     3061 tttacagaaa atttgaatcc ttgatcaaat ccaaatacaa aagactgacc aagcatccag
     3121 ccgtttcctt ttagcgtaga atcaaaatca ccaccttcat aatccgctac accagcaagt
     3181 gaaaaaacat attgcggttt aatatcccaa gcaatattat cgcctaatgc aacagtatac
     3241 atagggccgg cacctaaata gcctgcgcca aaggctgcag tatcccctcc atcatcttcg
     3301 aaggtgcttg ccgctgcgcc gtaggttagc gttgctccaa tactctcagt aaaacgatac
     3361 ccgaaattta cgttgaagtc aaaccctgtg ccgagctcag catcatccgc aatgtccccg
     3421 ccaggaaaag aagcgcccac gttaagcgct aaataagctt tggaatcttg tgccattgcc
     3481 ccaaaagaaa ctaaggcgac cattaaaaaa atcagttttt tcatgtgttg ttgtttttgg
     3541 ttaataaata aagatacgga aatttcaccc acattaatag aagatccttt tttttcaata
     3601 gcagcattaa ttttggcacg aaatacatga ataatgacac aatcgacatt ccgattgaat
     3661 aaaataataa tgttctcctg aaaatttttg cctcgaattt ataaatacga agaaccaccc
     3721 caccctaatc ctttaacata cgacacaata gaggtatcat tgtgcatgca tgagaaagtc
     3781 gcacaacgca tcaaacaact tcgcttaaaa aatggcctat cccaagaagg cctatcgcat
     3841 ttggccgaac tcgatcgaaa gtatatcgga atcatcgaaa aaggtcatac caatgtctct
     3901 atccaagtgc tttctcaaat atgtgaggcg ctggacattt ccctctcaga attttttcga
     3961 ggattttaaa caatcacccc caacgcaact tcagcgatga gggtgatgca attaaccaaa
     4021 acaacaatta aacaaacaat taattaaaca accatgtcga ccattgaata ttcatccgtc
     4081 ggggtgttaa aaaaatagtg gatccactag ttttcactaa tttttgatga cttccgcgca
     4141 ttaaggaatc aatggcgtct gcaattttgc aattgagcga ttgatttctt cttgagtgag
     4201 ctcgtgcttg acaattttac ccgcgaaata atcctggtaa gccttcatgt cgaaattacc
     4261 gtgaccgcac aaattcaaca aaattgttcg cgaaacgcct tcttccttac acttttcggc
     4321 ctcagcaatc gcggtgg
//
LOCUS       DPUP01000040            2511 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3442,
            whole genome shotgun sequence.
ACCESSION   DPUP01000040 DPUP01000000
VERSION     DPUP01000040.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..575
                     /locus_tag="DHV98_01400"
     CDS             <1..575
                     /locus_tag="DHV98_01400"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05046.1"
                     /translation="VAVTGSVKVRVSDDGGQTWNSLTLNLPDFSALTVVWDDNGSNGL
                     YLGMDYGVYYIDDTFSEWQPFMTNLPNVIVSELEINQANGKIYAGTYGRGLWSSTKYG
                     YVVANEDFQQIQMSLAPVPAQDHLNLVLETPQTASIQIFDLQGKLLYYEPSVFLQGAH
                     SIDLKEFSSGLYVLRLKGAWGQITKKFSIE"
     gene            585..1205
                     /locus_tag="DHV98_01405"
     CDS             585..1205
                     /locus_tag="DHV98_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008992126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HCK05047.1"
                     /translation="MDFSSKLLARAVDEMALLPGIGKRTALRLVLHLLKQPNGRTLAL
                     SQALTELREQSQFCKQCHNISDQPLCDICVNVNRDKSVVCVVEDIRDVMAIENTSQFK
                     GVYHVLGGKISPMDGIGPHDLTIESLVQKVRAKEIKELIFALSSTMEGDTTNFYIFKQ
                     IEGQEVVMTTIARGIAVGDELEFADEVTLGRSIVHRIPFETSFKQN"
     gene            1214..2371
                     /locus_tag="DHV98_01410"
     CDS             1214..2371
                     /locus_tag="DHV98_01410"
                     /inference="COORDINATES: protein motif:HMM:PF13641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05048.1"
                     /translation="MELSVIILSYNVQHYVWQCIDSVLAGVEGLKAEVILVDNASSDE
                     TLVSITQDFPQVTLIANEENIGFSRAYNQAVKQAKGTYLCILNPDTVVGESLFKTLLK
                     PSMTHRQMGAIGTQFIDGRGCFLPECKRVVPTPLGSLRKLLGFAGQKDLYYHDSMAPD
                     EAGPVSILAGAFLFLKRLDYLGIDGFDEHYFMFGEDIDFSYKLLLNAKQNYYLGTEKI
                     IHYKGESTQKNRQYLSRFYGAMVHFYKTHFSNSRFKVFLVSLLAQGLILWRGLWPKNQ
                     STHTPSIEAVFWVSERVDLSDHLAHWLGQKVQSLNLGSFKRQTPAGLKNTPPKNALLV
                     FDRASLTYEAIIELMSLGASHGQRFRIWHSQKQLLIGSDSSDTHGEALILG"
BASE COUNT          692 a          492 c          584 g          743 t
ORIGIN      
        1 ctgtggcggt cacagggagt gtaaaagttc gtgtctctga tgatggcggt caaacttgga
       61 actcgcttac gttgaattta cccgatttta gtgcccttac tgtagtatgg gatgataatg
      121 gaagtaacgg gctttacctt ggaatggact atggggtgta ttatattgat gataccttca
      181 gcgagtggca accctttatg acgaatttac ccaatgtcat tgtgagtgaa ttagaaataa
      241 atcaagccaa tggaaaaatt tatgccggga cctatggtcg tggcctttgg tcctcaacaa
      301 aatacggtta cgttgtggcc aatgaagatt ttcagcaaat acaaatgagt ctggcccctg
      361 ttcctgctca ggatcatttg aatttggttt tagagacccc ccaaaccgcg agcattcaga
      421 tctttgacct tcagggtaag ttgctctatt acgagccatc ggtcttttta cagggcgcac
      481 acagcattga cttaaaggaa ttttcttctg gtctttacgt gctccgactc aaaggggcct
      541 ggggtcaaat caccaaaaaa tttagtattg aataaaagct agagatggat ttttcgtcaa
      601 aactattggc gcgtgctgta gatgaaatgg ctttactgcc ggggattggt aagcgcactg
      661 ccttacgtct ggtgttgcac ctgctcaaac agcctaatgg gcgcaccttg gccttgagtc
      721 aggcgttaac cgagttgcgg gagcaaagtc aattttgtaa acaatgtcac aatatctcag
      781 accagcccct ctgtgatatt tgtgtcaatg tgaatcgaga caaatccgta gtttgtgtgg
      841 tggaagatat tcgcgatgtc atggctattg aaaatacgag tcagttcaaa ggagtctatc
      901 atgtcttggg cgggaaaatt tctccaatgg atgggatcgg gcctcatgat cttacgatag
      961 agtctttagt ccagaaagtt cgtgctaagg aaattaaaga attgattttt gccttgagtt
     1021 ctacaatgga aggcgacacg accaactttt atatttttaa acaaattgaa ggccaagagg
     1081 tggttatgac cacaattgct cggggtatcg ccgtgggaga tgaattggaa tttgccgacg
     1141 aggtgaccct tgggcggagt atcgtacatc gcataccctt tgaaacttca tttaaacaga
     1201 attaaacaag tctttggaac tttcggtaat catactgagt tacaatgtcc aacattatgt
     1261 ttggcagtgt attgattcgg tattggctgg ggttgaagga ctcaaggccg aagttattct
     1321 cgtagataat gcctcaagtg atgaaacttt ggtgtcaata acacaggatt ttccacaggt
     1381 aacgcttatc gccaacgagg aaaatatcgg cttttctcga gcgtataatc aagcagtgaa
     1441 acaggccaaa ggcacttatc tctgtatttt aaatcctgat acggttgtcg gggaatccct
     1501 ttttaagacc cttttaaagc cctccatgac ccaccgtcaa atgggggcta taggcaccca
     1561 atttatcgat ggaagaggtt gttttttgcc cgagtgcaag cgggtcgtgc ccacacccct
     1621 aggaagcctg agaaagttat tgggtttcgc tggtcaaaaa gacctttact atcatgactc
     1681 aatggcccct gatgaggcag gccctgtttc cattttggcc ggagcatttt tatttttaaa
     1741 gagattggat tatctcggga ttgatggttt tgacgagcac tattttatgt ttggagaaga
     1801 cattgacttt agctacaaac tcttgttaaa tgcaaagcaa aactattatt taggcaccga
     1861 aaaaataatt cattataaag gcgaaagtac ccaaaaaaat cggcagtatt tgtcgcgatt
     1921 ttatggagca atggtccatt tttacaagac ccatttttcc aacagtcgat tcaaagtatt
     1981 tttagtttcc ttgttggctc aaggactcat cttatggcgc ggcttatggc caaagaatca
     2041 atcaacacat accccgtcta tagaggctgt attttgggtc agtgaacgcg tcgatctgag
     2101 tgatcatttg gctcattggt tggggcaaaa agtacaatca cttaatttgg gctcatttaa
     2161 aaggcaaacg cccgcgggtc taaaaaacac cccacccaag aacgctcttt tggtttttga
     2221 tcgggcttct ttgacctatg aggctattat tgaactcatg tctttagggg cgtctcatgg
     2281 tcaacgattt agaatatggc acagtcaaaa gcaattactc atcggaagcg attcgagtga
     2341 cactcatggc gaggccttga tcttgggctg atgaacgctt ttttgggata tttcgcgtct
     2401 gagaattctt gatttaaccg ggattttgtg tcaaaggaat tgtaaaatat tcaacaaaaa
     2461 cctgatattt tcgttaattt tgcaaaaatt aaagacaacc gccgacctat g
//
LOCUS       DPUP01000041            4122 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15048,
            whole genome shotgun sequence.
ACCESSION   DPUP01000041 DPUP01000000
VERSION     DPUP01000041.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4122)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4122)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..328
                     /locus_tag="DHV98_01415"
     CDS             <1..328
                     /locus_tag="DHV98_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008106917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase 2"
                     /protein_id="HCK05049.1"
                     /translation="DTGMVTMTTQKQSEFELHAKAILGLPVDTSLLNPGASAVIYGQY
                     DAKNIIFEGVQSALSIEGIDVRLFGKPESFKKRRMGVVLASAENISLARENATKAQAL
                     IIPKLN"
     gene            400..2214
                     /gene="typA"
                     /locus_tag="DHV98_01420"
     CDS             400..2214
                     /gene="typA"
                     /locus_tag="DHV98_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013147819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HCK05050.1"
                     /translation="MSRKLRNIAIIAHVDHGKTTLVDKLLQQSGTFAQHQSVNERVMD
                     SNDIEKERGITILAKNTSVTYEGHHINIVDTPGHADFGGEVERVLGMVDGVVLLVDAV
                     DGPMPQTRFVTKKALALGLRPIVLLNKIDRPGARCDWVINQTFDLFANLGATDEQLDF
                     PVVYASALNGYAKLKESDESDSMKPLFETVLSHVKAPEGDPKAPLQFQISALDYSTYT
                     GRMGIGRISNGVLKPGSLVAVMLGDKKIGQGRINEVFGFKGLERVAVKEAEAGDIVII
                     TGIEDVGIGVTIADSEKPVGLPIIAIDEPTLNMDFMVNSSPLAGKEGKFVTSRQIRER
                     LTKELLVNVALRVEDTSDETVFRVSGRGELHLTILLENMRREGFEIAVGKPRVVYKEI
                     DGVRCEPYESLTVDIEDDTQGSVMEELGRRKGELTNMESDGLGRTRLEYKIPARGLIG
                     FQGEFLTMTRGTGLMSHIFDEYSAVKSEIPGRRNGVLISSEKGDAVAFALWKLQDRGR
                     MFVSPGDKLYEGMVIGIHSRDNDLIVNPIKGKQLTNVRSSGTDEAVRLVPPILMSLEY
                     AVEFIDDDELVEITPVSLRIRKRYLLEHERKRSNKIEG"
     gene            complement(2215..>3750)
                     /locus_tag="DHV98_01425"
     CDS             complement(2215..>3750)
                     /locus_tag="DHV98_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008106924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HCK05051.1"
                     /translation="VSVKFGDGNRYGLIGANGCGKSTFMKILAGELEATAGSIALESQ
                     ERMAWLRQDQFAYENLRVLDVVMMGHQEMWAANEEKNRLYANPDATEDDYMKAAELEG
                     VYAEYDGYTAEARAGELLAGVGIPNELHEGLMSGVAPGWKLRVLLAQALFSDPDILLL
                     DEPTNNLDINTIRWLENILNNRNSTMIIISHDRHFLNQVCTHTADMDYAKLTIYPGNY
                     DDFMEASSMARAQQLKANDKAKLQIAELQDFVRRFSANASKAKQATSRAKQIDKIKVE
                     DMKPSSRQYPFIRFEYDEKDKLYRQALIVNKVDHAFDEPLFNNLNFMVEAGERIAIIG
                     ENGIGKSSLLKIIGNILTPNSGSVKWTEKAKLGYFAQDHSEEFQKDVSVFEWMSQWGR
                     PEDDDQVIRSMLGRLLFSGEDFKKKIKVLSGGEQGRMLFGKLMLLKTNILLLDEPTNH
                     MDMESIESLNTALDKFKGTLFFVTHDREFVSSIATRILDIRKDKIIDFMGNYEDYLSS
                     QED"
     assembly_gap    3751..3906
                     /estimated_length=156
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4013..>4122)
                     /locus_tag="DHV98_01430"
     CDS             complement(4013..>4122)
                     /locus_tag="DHV98_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005999167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HCK05052.1"
                     /translation="DHTPAMFVAIGRSIQEPWPRPGQLSVDEVVKYNQF"
BASE COUNT         1114 a          826 c          877 g         1149 t
ORIGIN      
        1 tgataccggt atggtcacga tgaccactca aaaacagtct gaatttgaat tgcatgcaaa
       61 agcaattctt ggtctgccag tggacacctc actccttaac ccaggcgcga gtgctgttat
      121 ctatggccaa tatgatgcta aaaatattat ttttgaggga gtgcagagtg cactgtctat
      181 tgaaggaatt gatgttcgcc tcttcggaaa gcctgaatct tttaagaaaa gaagaatggg
      241 tgttgtttta gcgtccgcag aaaatatctc gttggcaaga gaaaatgcaa ccaaggctca
      301 agccttaata atcccaaaac taaactaacg tttttattag aatttttagc ggaggttgtg
      361 ctaaaattcg cgccttatta aatttatttg gtatccctca tgtcccgcaa gctaagaaac
      421 attgccatta tcgctcacgt tgatcatggt aaaacaaccc tcgttgataa attacttcaa
      481 cagtctggca cattcgcgca gcatcaaagc gtaaatgagc gcgtcatgga ttcgaatgat
      541 atcgaaaaag aacgtggtat tacgatttta gctaagaata cctctgtgac ctacgaaggt
      601 caccacatta atattgtgga cacacctggc catgctgatt ttggcggtga agtcgagcgt
      661 gttttaggga tggtagacgg tgttgtgtta ttagttgatg ccgtggatgg gccgatgccg
      721 caaacgcgct tcgtaaccaa aaaagcattg gcactaggat taagacctat tgtgcttctt
      781 aataaaattg atagaccagg cgcgagatgt gattgggtta ttaatcaaac ctttgattta
      841 tttgcaaacc ttggcgcaac agatgagcag ctcgatttcc cggttgttta tgcgtcggca
      901 ttaaacggct acgctaaact taaagaaagt gacgagtctg actcgatgaa accacttttc
      961 gagaccgtgt taagtcatgt taaagctccc gaaggtgatc ctaaagctcc cttgcagttt
     1021 caaatctctg cattggatta ctcaacctac acaggccgca tgggcatagg tcgaattagt
     1081 aatggtgtat taaagccagg ctctttggtg gcagtgatgt tgggtgataa aaaaattggc
     1141 caaggccgta tcaatgaagt cttcggcttt aagggactgg agagagttgc cgtaaaagaa
     1201 gcagaggcgg gtgacattgt tatcattaca ggaattgagg acgtagggat tggcgttacg
     1261 atcgcagaca gtgaaaagcc tgtcggcctc cctattattg cgatagatga acctaccctt
     1321 aatatggatt ttatggtgaa cagttcgcca ttggcgggca aggaaggcaa gtttgtcacc
     1381 agccgtcaaa tacgtgaacg tctcactaaa gagttgttgg tgaatgttgc tttgcgtgtt
     1441 gaagacacat ctgatgaaac tgtttttcgg gtatcaggac gaggtgagtt acatttaacc
     1501 atccttttag aaaatatgcg ccgagaaggc ttcgagattg ccgtcggaaa accccgtgtc
     1561 gtgtacaaag aaattgatgg cgtaaggtgt gagccttatg agagtctaac ggtagacatt
     1621 gaggatgaca ctcaaggttc ggtcatggaa gaactcggtc gacgcaaggg tgaactgacc
     1681 aatatggaat cagacggcct aggccgcaca agactagaat ataaaatccc cgcaagaggc
     1741 cttattgggt ttcagggtga atttttaacg atgacccgag gtacaggtct aatgtcacac
     1801 atttttgatg agtactctgc agtaaaatca gaaatcccag gcagaagaaa cggagtgtta
     1861 atttcctctg aaaaaggaga tgccgttgcc tttgcgttat ggaaacttca ggacagggga
     1921 agaatgtttg tcagtcctgg cgacaaactt tacgagggta tggttattgg tattcacagt
     1981 cgagataacg acttaattgt taacccaatt aagggtaaac aattaactaa cgttcgctct
     2041 tcaggaaccg atgaagcggt gaggttagtc ccgccaattt taatgagttt agagtacgcg
     2101 gtcgagttta ttgatgacga tgagttagtg gaaattactc cagtctccct cagaattaga
     2161 aaacgttatt tacttgaaca tgaaagaaaa agatcaaata aaatagaagg ttagctaatc
     2221 ttcttgagaa gataggtaat cttcgtaatt acccataaag tcaataattt tatcttttct
     2281 aatgtccagt atacgggtcg cgattgaact tacaaattcg cgatcatgtg tcacaaaaaa
     2341 gagggtccct ttaaatttat ccaaggcggt attaagagac tcaatcgact ccatatccat
     2401 atgattggtc ggctcatcca aaagcaatat attcgttttt aacaacatta atttaccgaa
     2461 cagcattcgt ccttgttcac caccggacag cacctttatt tttttcttaa agtcttcccc
     2521 ggaaaaaaga agtcggccga gcatgcttcg aataacctgg tcatcatctt ctggtcttcc
     2581 ccattgagac atccactcaa aaacgcttac atctttttga aattcttccg agtgatcctg
     2641 tgcaaagtaa cctagttttg ctttttcagt ccatttaacg gagcctgaat taggcgtcaa
     2701 gatattacca ataattttaa gtaatgatga tttaccaata ccattttcac caataattgc
     2761 gattctttcc ccagcttcta ccatgaaatt aaggttatta aaaagcggtt cgtcaaaagc
     2821 atggtcaacc ttgttcacta ttagtgcttg gcggtagagc ttatcttttt cgtcgtactc
     2881 aaatcgaata aatgggtact gacgactcga cggcttcatg tcctcgactt taattttatc
     2941 aatttgtttt gcgcgtgagg ttgcttgttt tgccttcgaa gcgttggccg aaaatcttct
     3001 cacaaagtct tgaagctctg caatttgaag tttggctttg tcgttagctt ttaattgttg
     3061 agctctagcc attgagctgg cttccataaa gtcatcatag ttacctgggt agatggttag
     3121 cttcgcgtaa tccatatctg cggtgtgtgt gcagacttgg tttaggaaat gacgatcatg
     3181 cgaaataata atcatggttg agtttctatt gttaagaata ttctcaagcc accgaatggt
     3241 attgatgtcc aagttattag tgggctcatc gagcaacagg atatctggat cagaaaacaa
     3301 ggcttgtgcg agcaggactc gaagcttcca tccgggtgca acgccactca tcaaaccctc
     3361 gtgtaattcg tttggaatgc caacccccgc caaaagttct cccgctctgg cttcagccgt
     3421 gtaaccatca tattcagcat aaacgccttc gagctccgcc gctttcatgt aatcatcttc
     3481 ggtcgcgtca gggttagcgt agagccgatt cttttcctcg ttggctgccc acatttcctg
     3541 gtggcccatc atgacaacat cgagcaccct taaattctca taggcgaact gatcttgacg
     3601 cagccatgcc atacgttcct ggctttcaag ggcaatactt cctgctgtgg cctctaattc
     3661 acccgctaat attttcatga aggtggactt tccgcaacca tttgccccaa taagaccgta
     3721 gcggttgcca tcaccaaatt ttactgaaac nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnntgcc gtcaccaaat tttactgaaa catcttcaaa taacggtttt gaaccaaatt
     3961 gcatcgtgat gctgtttgta ataagcactg actatttcct taactttatt gattaaaatt
     4021 gattgtattt aacgacttca tcgaccgata gttgccctgg tcttggccac ggctcctgaa
     4081 tcgacctccc gatcgctaca aacatagcag gggtgtgatc at
//
LOCUS       DPUP01000042            9035 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14045,
            whole genome shotgun sequence.
ACCESSION   DPUP01000042 DPUP01000000
VERSION     DPUP01000042.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9035)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9035)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9035
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            36..1376
                     /locus_tag="DHV98_01435"
     CDS             36..1376
                     /locus_tag="DHV98_01435"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05053.1"
                     /translation="MKKHLYFFSLLVIITVFQAKSQEVIAVINEPNVVLLDPFDGSVL
                     NSAFIDLTPLNQGQPKDITQVGEEIWITDQTADRIDRFDLTGTFLSTINTGLDNIKGL
                     AVIGSEVWVTNAGTNNGAPGSAIVRLDFQGNALGNFATIGSSFDILDVGNNEVYIAYI
                     GNDSRIERRDYQGNLLGDLVQTGVVTFIQQMALSPNNNTVFAAVFSNNGANIAGLYEF
                     SRADGSIVDFWQEGSLRGVMPLGNGQMLLSAGTNYGVKILDPTSGNTTQLWPESSQYF
                     SKLNLSPCNTPPTPVGAANQTFNEGATIEDIVVDPSDVIWFATESDALNNINPLAPGT
                     LLDNATYYGIQIVDGCPSLPLAVAVTINVLGLSEWEDGVIKMAPNPAVDVVNFSASNF
                     IQSYSLFNNMGQILIERSVQGFDGRIDVSTLPSGIYFIKFFSKVGQKNVPLIRQ"
     gene            complement(1435..1653)
                     /locus_tag="DHV98_01440"
     CDS             complement(1435..1653)
                     /locus_tag="DHV98_01440"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05054.1"
                     /translation="MNKKQALIQAVKILGFGLILLIISTYVLNFAFLNKNIIPLYLML
                     PLGIIGVAATIYTLFRGIRTLVSVFFDQ"
     gene            complement(1650..2459)
                     /gene="murQ"
                     /locus_tag="DHV98_01445"
     CDS             complement(1650..2459)
                     /gene="murQ"
                     /locus_tag="DHV98_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008462601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HCK05055.1"
                     /translation="MSPTSTTESDSLHRDLEKKSISELLYLMNEEDQKVPLAVNAVIP
                     EIQAIVTVIVEKMRQGGRLFYIGAGTSGRLGILDASECPPTFGVPHDLVIGLIAGGDD
                     AIRKAVEFAEDSTTQAWIDLQNCGISKNDVVIGIAASGRTPYVVEGLNMCKSHGIVTG
                     GISCNPQSPLVAIADFPIAVNVGPEFLTGSTRLKAGTAQKLILNMITTITMIQLGRVQ
                     DNKMIDMQLSNNKLVERGIIMLMDFGKITREKAIALINTHGSVREALKSLQ"
     gene            complement(2524..3378)
                     /locus_tag="DHV98_01450"
     CDS             complement(2524..3378)
                     /locus_tag="DHV98_01450"
                     /inference="COORDINATES: protein motif:HMM:PF14054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05056.1"
                     /translation="MKRLIFTLSIFSLLGTSCQEVITVDLPSQAPKLIVDALVRIDTS
                     ASTTLVSIEVRQTSDFFGEISPISVDQMTMSNLDNPGNNTDQVLDETEPGSGIYQQVF
                     STQELARDRWFLQIDYQGELYVAESRMQYSVPIDQLTIGDGSLFSEESTELLIKYSDV
                     GDRQDFYLFDYGNGDFFASEDAFYDGQQFAFSYFYDEEFNPGEVLTVSIMGIDRDFFN
                     YMNLLREQNEGGFGPFASPAVSVRGNLINATDIDNNNNYNNVNNPDNYALGYFALVQE
                     YRDSIVVE"
     gene            complement(3382..5866)
                     /locus_tag="DHV98_01455"
                     /pseudo
     CDS             complement(3382..5866)
                     /locus_tag="DHV98_01455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751620.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    5208..5263
                     /estimated_length=56
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(5886..8111)
                     /locus_tag="DHV98_01460"
     CDS             complement(5886..8111)
                     /locus_tag="DHV98_01460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HCK05057.1"
                     /translation="MKSTPDIYYTITDEAPFLATYSLLPVVQKFAKHAGINIDTADIS
                     LAGRILASFNDYLNEDQKTTDALHMLGELAKRPEANIIKLPNISASMPQLLSAIEELQ
                     NKGFAIPDYPHQPQNDKEQTIKATYDKIKGSAVNPVLREGNSDRRAPMAVKNFAKKHP
                     HKMGAWQENSQTRVATMSQGDFIHNEQSKTFDQPNTLSIVLKSNSGAETILKDNIKVL
                     NGEIVDASLMQREELTKFLRDSIDQAQREQLLLSLHMKATMMKVSDPIIFGHAVKTFF
                     APVFEQFGTVLDELNVSVNNGFGDLISKIQNLPQDQKKAIEQSIQECYTQRPDLAMVN
                     SDLGITNLHVPSDVIIDASMPAMIRNSGQMWDKEGAVQDTLAIIPDSSYAGVYQATID
                     FCKANGAFDPATMGTVPNVGLMAQKAEEYGSHDKTFEIDHAGQIQVLDQQGNTVFAFQ
                     TQAGDIFRMCQVKDAPVQDWVKLAVSRAKATGWPAVFWLDEQRAHDSELIKKVHLYLE
                     DHDTQNLELKILAPQNATEYTLERLARGENTISVTGNVLRDYLTDLFPILELGTSAKM
                     LSIVPLMNGGGLFETGAGGSAPKHVSQFTSENHLRWDSLGEFLALAVSLEHFGEKNNN
                     QKAIVLAEALDKATEKLLDQQKSPSRKVHELDNRGSHFYLALYWAEALAHQDKDQALR
                     EHFSPIAETLFGQEQTIVKELNQVQGQPVDINGYYAPDIQAVTQHMQCSLTFNQILKG
                     I"
     gene            complement(8962..>9035)
                     /locus_tag="DHV98_01465"
     CDS             complement(8962..>9035)
                     /locus_tag="DHV98_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010527819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCK05058.1"
                     /translation="RRKRIYYFRELTGKKARIKEKKY"
BASE COUNT         2461 a         1846 c         1942 g         2730 t
ORIGIN      
        1 tgatgaaata agtttcacaa tcagtcttta atattatgaa aaaacatctc tattttttta
       61 gtctactggt gatcataact gtgttccaag caaagtcaca agaagttatc gctgtgatca
      121 atgagccaaa tgtcgtttta ttagatcctt ttgatggttc tgttctcaat tctgccttca
      181 ttgatttaac gccgttaaat caaggtcaac caaaagatat cactcaagtg ggagaagaaa
      241 tttggattac ggatcaaact gctgatcgta ttgatcgatt tgacctgacc ggtacttttc
      301 taagtacgat caatacgggc ttggataata tcaagggttt ggcggtaatt ggtagtgaag
      361 tttgggtaac caatgccggt accaataacg gagcccctgg ttcggccatt gttcgtctgg
      421 atttccaggg aaatgcttta ggcaatttcg caacaattgg ctcgtccttt gatatcctcg
      481 atgtgggtaa taatgaagtc tatatagcct atatcggtaa tgacagccgc atagaaagac
      541 gggattatca gggtaattta cttggggact tagtacaaac gggggtcgtt acatttattc
      601 aacaaatggc actatctcca aataataata cagtgtttgc agccgtattt agtaataatg
      661 gggcaaatat agctgggcta tatgaattta gtcgtgctga tgggagtatt gttgactttt
      721 ggcaagaggg gagtctgcgc ggggttatgc ccttgggcaa tggtcagatg ttactgagtg
      781 cggggaccaa ttatggcgtg aaaatattgg atcctacaag tggcaatacg acccaattat
      841 ggccggagtc ctctcaatat ttttcaaaac taaacctatc gccgtgtaat acaccaccga
      901 ccccggtggg tgctgcgaat cagacattta atgaaggcgc taccatcgag gatatcgtgg
      961 ttgatcctag tgatgtaatt tggtttgcca cagaatctga tgccttaaat aatataaatc
     1021 cattagctcc aggcacactg cttgataatg cgacgtatta tgggatccaa atcgtggatg
     1081 gttgtccgag tctacccctg gctgtggcgg ttacgatcaa cgtcttgggc ctatctgaat
     1141 gggaggatgg agtcattaaa atggccccaa accctgccgt tgatgtggtc aatttcagtg
     1201 cctcaaactt tatacagagt tatagtttgt ttaataatat ggggcaaatc cttatagaga
     1261 ggtctgttca aggttttgat ggacgcattg atgtttccac attgcctagc ggaatatact
     1321 ttataaaatt tttcagtaaa gtgggccaaa aaaacgtacc actgattcgt cagtagacgc
     1381 attgtctccc tgtattatta gggcgacaat tatcaatggg ccattgtcta taccttattg
     1441 gtcaaaaaag acagacacca gcgtgcggat gccacgaaag agggtgtaaa tcgttgcggc
     1501 aacaccgata atccctaaag ggagcatgag gtaaagtgga attatatttt tgttgagaaa
     1561 agcaaaattc aacacgtagg tgcttatgat taaaagtatt aggccaaacc ccagtatttt
     1621 gacggcttga attagcgctt gctttttatt cattggagtg attttaaggc ttcgcgaaca
     1681 ctgccatgtg tgttgatcaa ggctatggct ttttctctgg taatcttccc aaaatccata
     1741 agcataataa taccgcgttc cacgagttta ttattgctca attgcatgtc gatcatttta
     1801 ttgtcttgca cacgccccaa ttggatcatc gttatcgtag taatcatatt gagtataagt
     1861 ttttgcgccg tacctgcttt gagcctagtg cttcccgtaa ggaattctgg ccccacatta
     1921 accgcaatgg gaaagtcagc aatggccacg agtggacttt gggggttaca acttattcct
     1981 ccggttacaa ttccgtgcga tttacacatg ttaagtccct ccacaacata aggggtgcgc
     2041 cctgaggcag cgataccgat aacaacatca tttttggaaa ttccacaatt ttgtaaatca
     2101 atccatgcct gggtcgtact gtcttcagca aattctacgg cctttctaat tgcgtcatca
     2161 ccaccagcga ttagcccaat aactaaatcg tgcggcacgc caaaagtggg tggacattca
     2221 ctggcatcaa gtatgcctaa acggccactt gttcctgcgc cgatgtagaa tagccgcccg
     2281 ccttgcctca ttttttcaac aataactgtg acgatcgctt gaatctcagg gataaccgca
     2341 ttgacggcca aggggacctt ttggtcctct tcattcatta aataaaggag ctccgaaata
     2401 gatttttttt ctaaatctct atggagtgaa tcggactcgg tagtgctggt tggcgacaaa
     2461 acaatggttt agtgtcatga agatagtcaa accttattca aactaaaagc ttagccaagt
     2521 aatttattct acgacgatac tatcgcgata ctcttgaacc aaagcaaaat aacccaaggc
     2581 ataattatca ggattattta cattgttgta attattattg ttgtcaatat cggtggcatt
     2641 aatcaaattt cctcttaccg aaaccgcagg ggaggcaaac gggccaaaac cgccttcatt
     2701 ttgttcgcgc aggagattca tataattaaa aaagtctcga tcaattccca tgatactgac
     2761 cgttaggacc tctcctggat taaattcctc atcgtaaaaa taggagaacg caaactgctg
     2821 tccatcgtaa aaggcgtctt cagaggcaaa aaagtctcca tttccgtaat caaataaata
     2881 aaagtcttgt cggtctccga cgtctgaata tttaatgagc agctctgtcg attcctccga
     2941 aaataaactg ccatctccaa tagttaattg gtcaataggc acagagtatt gcatgcgaga
     3001 ttcagcgaca taaagctcgc cctggtaatc aatttggaga aaccagcgat ctcgagcgag
     3061 ttcttgtgtc gaaaacactt gctggtaaat accagatccg ggttcggttt catcgaggac
     3121 ctgatccgta ttattacccg ggttatccag attactcatg gtcatttggt caacagaaat
     3181 gggcgaaatt tctccaaaaa agtcacttgt ttgacgtact tctatcgaga ccagtgtcgt
     3241 gctcgctgag gtgtcaatcc gaactaaagc atctacgata agcttaggcg cttgactggg
     3301 gagatccacg gtaattactt cttgacatga agtccctaga agtgagaaaa tagataatgt
     3361 aaaaattaat cgcttcatgg cctagaattt aaagttataa gtaaccgctg gaacgagtcc
     3421 gaaaatcgaa gtgcgtaccg cttcgttcgc tccggtatcc gcattttgcc taaaatttat
     3481 tgacgcggca ttctgcctgt tgtagaggtt gtaaatacta aaaacccatt cactttggta
     3541 ggttgtattt gttttgcgtt ttggggtata ggttgccgaa agatcaagtc tgtgataatc
     3601 gggtaacctc tgttcattgc gcaaaccata ataaggcacg accacgcctt gaaaatcaaa
     3661 ttgaccaata gggtaatttg tcggaagacc ggtttgatag ataaaattgc tgtttatttt
     3721 ccagcgatcg ttcacggtat aagcaccata tatggataaa tcgtggggct tatcataagg
     3781 ggtattatac cattggccat tattgattcc aatttcattt tcatttctag gcgatgtttt
     3841 ctgctcgctt tttgataagg tataggcaat ccaaccctgg aaagcacctt tgtttttacg
     3901 cagtaaaacc tcaagtccat aggcacgggc attaccatct aaaatgactt gttcaatggc
     3961 gttgttggcg attagattcg ccccatcaat atagtcaatt cggtggcgaa cgtctttata
     4021 ataagtttcg acttctagtg aataagcgcg gtcctttaaa aaactaaaga cgcctatagc
     4081 atattgatca aggcgttgtg gcttgacata agggccgctc ggggtccaaa catcaagcgg
     4141 agtaggactg ctggtgttgg ataatagatg taaatactgt gacagttttg tataactcgc
     4201 cttgagcgaa atatcgtctg tgatggtgta ggatgcggca atacgtggct cccaattgct
     4261 gtatgttttc aggcgctccc agcgatctac ccttatggtt tcaataggat ctgcctcttt
     4321 gtaaataaga aggaacggat caaaagtcac tggggcatcg tcggcataaa gttgaaattc
     4381 atcctgacca aaacgcataa aatgactgcc cctcagaccg acttcggccc ttaaacgttg
     4441 agaaatttcc cactccaggt ctaaatatag agcggcttca ttggcgtatt tttgcgtgag
     4501 ttgatccgcg acaattccag aatctggtct attgggaatt atttttcccg gattaaagcc
     4561 atagtagata ttttgaagcc cgtaattgag ctgcaaccct ttacttaaat agtgattgaa
     4621 gtcgtattta agattgaaat tctctatccc agaatcccat ttgaacccaa caaaatctaa
     4681 ctctaaacca taatagtaat tagaataaat taaggacaaa tttgaaaaga gcttgtctga
     4741 aaagttgtga ttccaacgaa agttaaaaac tgcatttccg taactattaa tgaagctatc
     4801 ttgaattcca aaataatctc taccaaaata ccccgagaga taaagactgt ttcgatcgtc
     4861 aattttgtaa ttgattttag tgtttaaatc atagaaataa gccgtgttct cgatgtcaaa
     4921 taaaggaaga aataaatgcg catatgagcc gcgtccaccg actaaaaagg ccgcttgatc
     4981 cttttttatc gggccttcga ccaaaagacg actggctact gcaccgatac caccgctcat
     5041 tttgaaattt ttactattcc cttctttttg atagatatct aatactgaag aaacccgtga
     5101 tccgtaacgc gccggaatac ttcctttgta aagtttcaaa tctttaatgg catctgggtt
     5161 aaataccgaa aagaaaccaa ataagtgaga ggagttgaaa atagtcgnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnagtcgct tcgtcaagta
     5281 aaatcaggtt ctgatcggcg gcaccaccgc gcacattaaa gcccgaagcc ccttcaccgg
     5341 cattacttac ccccggcaga agtaacagtg atttgatgac gtctgcctca cctagaacta
     5401 cgggaatatt tttaatggtt tgagccgtga gactattgac actcatttgc ggggtcgtaa
     5461 tatcaagggc ctcaacatcc gcttttatga ccacctcgtc aagttcttct gcattttccc
     5521 caagggcaat atcgatgacc atagacgtgt ttaactcaat ggttcttcgt tcgatggtat
     5581 agcctaaagt actataaatc aattcatgag tgccttgcgg tagtgtaatg gaataaaatc
     5641 cgtaggcatt tgtgattacc ccggcacgca gttcaggaat caatacattg actccaatta
     5701 gtgtttctcc tgtattcagg tcagaaacca ccccacttat ggtgtgttct tgttggccaa
     5761 aggcattggg tattccaagg caaaaaagca gcgcgaatag gccgctcaat aggtggtttt
     5821 tgtgctcttt ttgaaagagc acaaatcgta tgtgtttgta tttcatgtgt tgtgcgtcta
     5881 cgccattaaa ttcctttgag tatttgatta aaggttaggc tgcactgcat atgctgggtg
     5941 accgcttgaa tatctggggc gtaatagcca ttgatatcta cgggctgtcc ctgcacttgg
     6001 ttgagttctt ttacgatggt ttgttcctgg ccaaataagg tttcggcaat agggctaaag
     6061 tgttcgcgta aggcttggtc tttatcttga tgggccaaag cctctgccca ataaagagcg
     6121 aggtaaaagt ggctgcctcg gttatccaat tcgtgtactt tgcgcgatgg agacttttgc
     6181 tgatcgagta atttttctgt ggctttatca agagcctctg ctaaaacaat ggctttttgg
     6241 ttgttgtttt tttcaccaaa atgttcaaga gacacggcga gcgctaaaaa ttctcccaga
     6301 gaatcccatc taaggtgatt ttctgaagta aattgagaaa cgtgctttgg tgcagagcct
     6361 ccagcgcctg tttcaaataa gccgccaccg ttcattaatg gaacaataga caacattttg
     6421 gcactggtcc ctaactccaa aattggaaat aaatcggtca ggtaatcacg cagaacgttc
     6481 cccgtaacag aaattgtatt ttccccgcgg gccaaacgct ccagggtata ttctgtggcg
     6541 ttttgaggcg cgagaatttt taactccaaa ttttgggtgt catgatcttc aaggtaaaga
     6601 tgaactttct tgattaactc tgagtcatgc gcacgctgtt catctaacca aaagacggca
     6661 ggccaaccgg tggctttcgc tctagaaacg gctaatttta cccaatcttg aactggggca
     6721 tctttgacct gacacattct gaagatatct ccagcttgag tttggaacgc aaatacagta
     6781 ttgccctgct ggtctaatac ctgaatttga cctgcgtggt ctatctcaaa tgttttgtcg
     6841 tgagaaccat attcttcagc cttttgtgcc atcaagccaa cattggggac cgttcccata
     6901 gtggctggat caaaggcacc attggcttta caaaaatcaa tagtcgcctg atacaccccc
     6961 gcgtacgaac tgtccgggat aatggccaag gtgtcttgga ccgctccttc tttatcccac
     7021 atctgacccg agttacggat catggcaggc attgaggcgt cgatgatcac atcactcggt
     7081 acatggagat tggtaattcc gaggtctgaa ttcaccatcg caaggtcagg acgttgggtg
     7141 taacactcct gaatactttg ttctatggct tttttctgat cttgtgggag attttgaatt
     7201 ttactgatta aatcaccgaa tccattgttt acgctgacat ttaattcgtc gagaacggtt
     7261 ccgaattgct caaaaactgg agcgaagaag gtttttaccg catgaccaaa gatgatcggg
     7321 tcgctgacct tcatcatggt cgctttcata tgtaaggaaa gcaaaagctg ttctctttgt
     7381 gcctgatcaa tagaatccct taagaatttt gttaattctt cgcgctgcat taacgacgca
     7441 tcgacgattt ctccgtttag gaccttaata ttatctttta aaatcgtttc cgctcctgaa
     7501 ttagacttta gaacaatgct taaagtattt ggctgatcaa aagtctttga ttgttcgtta
     7561 tgaataaagt ccccttggct catggtggct actctggtct gtgagttctc ttgccaagcg
     7621 cccattttat gggggtgctt tttggcgaaa tttttcacgg ccattggcgc gcggcggtcg
     7681 ctatttcctt ctcttaagac gggattaacc gcacttcctt tgatcttgtc ataggttgct
     7741 ttaatggtct gctccttatc gttttgtggt tgatgagggt aatcaggaat ggcaaagcct
     7801 ttattttgaa gttcttcaat ggcgcttaag agttgaggca tcgaagcact gatatttggc
     7861 agcttaatga tgtttgcctc gggtcgtttt gccaattctc ccaacatgtg cagcgcatct
     7921 gttgtttttt ggtcttcatt taagtaatcg ttgaagctgg ccaaaatacg tcccgctaaa
     7981 gaaatatctg ctgtatcaat atttatcccg gcgtgttttg caaatttctg aacgaccggt
     8041 aaaagagaat aggtggctaa aaaaggagct tcgtcggtaa tggtataata gatatcgggg
     8101 gttgatttca tggtgctgtg cgtttgcaat taggcgttcg ttaaaggcta gcaaatatag
     8161 tgaataggga tgaaggcttc aaaaaaatga agcagaagcg taattcaata aaaccgcttt
     8221 tgtttgcgtc tttgaccttg gttgtttcgc cctcaagatt ggccattaac aagaaaagcc
     8281 atgtcattgt acgaatactt tgacatggct tcttgtgagt ctagccgtta ccaattaact
     8341 attacagttc aaggcaggtt tattaaaccc ctgcaattgt gacttgcttt ttaagcgacg
     8401 ttccctattt ggctttcgag gtttgaattt tggtgccatg cgcactgcgg taattttttt
     8461 ttcattgctg aaattaaaat cgattgcagc acgatgttat gctccgttgg cccttatgga
     8521 taaatctctc tgtgcttttg gtcctcagtg acattaatgc cactgataaa cacttcggct
     8581 catattgatt tccattaagg tcgctttttg actctggtcg taggctaact cggagttctt
     8641 acgaactctt tcattaatct ccgcgcctgt tggtcaatga tcaaacgtca ccggaaggga
     8701 actgactcac ctttcaaaaa aacggccaaa atcccctagt gcagaaattg gcttcattga
     8761 tgaaagtata tttaagaacg ttgcttaata tcgcggcgat tagtctcgct ttgatggttc
     8821 taaagtactg agctttttga atttacaaaa tttttgtcgg gagtaaataa caacagcttt
     8881 ttaactgggg ttatcaacaa ttgtaaataa caaaggcagc ccttatatgg actgcctttg
     8941 tgcgttttgg taaagcgaga tttaatattt cttctcttta attcttgctt ttttaccggt
     9001 caattctctg aagtagtaaa tacgttttct gcgca
//
LOCUS       DPUP01000043            4470 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16551,
            whole genome shotgun sequence.
ACCESSION   DPUP01000043 DPUP01000000
VERSION     DPUP01000043.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4470)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4470)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4470
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            1..831
                     /locus_tag="DHV98_01470"
     CDS             1..831
                     /locus_tag="DHV98_01470"
                     /inference="COORDINATES: protein motif:HMM:PF01642.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05059.1"
                     /translation="MGVHAILYAESGASNVQQLAYSMAQANETLEQLSGYGSLPKSLL
                     LNFSFGIGPNYFFEIAKLRAMRRLCTLLGRIHDREIKCHITALPAQRFMTVYDFNNNL
                     LRHSSAMMAGILGGANALCNLPYDHHYKKSHEFSQSLAENQLFILESEVFQDIDARVT
                     NGAYYIEQLTEKLAEQALALFKSIEASGGWLKAIKQGTLQRKIKEQHEKSVHALDSFD
                     AVVVGINKYADSTQKMKDQLELYPFQKMNPQKTLVAPIVARRLTQKFELQRLNDEKKA
                     "
     gene            815..1444
                     /locus_tag="DHV98_01475"
     CDS             815..1444
                     /locus_tag="DHV98_01475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05060.1"
                     /translation="MKKKRNIFNDYPSMNKAFFGVFLSLILSLNACQQGPEYRFQDEP
                     KVVACSEMPEDFMHELLYSFREDIGAFYNQYTDYIKGSRSYYFEAYGQYVYFGFSGTA
                     RFDDIASDHSRALLQELRKEKDFWIIKDKQERLNYNHPYLRCLLDGIADDDLRISLQN
                     LRQAKSLTPELIAETMRINVQKVISDPNLSMYLALDGFYQPLINRSAKK"
     gene            1441..3531
                     /locus_tag="DHV98_01480"
     CDS             1441..3531
                     /locus_tag="DHV98_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HCK05061.1"
                     /translation="MSQRKAVAHITLDDGPEWDQHTQSTEVDELSAYGAGAPPFLRGP
                     YATMYVQRPWTVRQYAGFSTAEESNDFYRKNLAAGQKGLSVAFDLPTHRGYDSDHPRV
                     TGDVGMAGVAIDTVDDMKILFDQIPLDKMSVSMTMNGAVLPIMAFYITAAQEQGVPPE
                     QLSGTIQNDILKEFMVRNTYIYPPAASMRIVRDIFKYTSQNMPKFNSISISGYHMQEA
                     GATAELELAYTLANGLEYVREGLAAGLHIDDFAPRLSFFWGIGMNHFEEIAKMRAARM
                     LWAKIIKSFAPKNNKSMALRTHCQTSGWSLTAQDPFNNVTRTAVEALAAVCGGTQSLH
                     TNALDEALALPTEFSARIARNTQLFLQHETQVTRSVDPWAGSFELERRTKQLMEKAWA
                     LIEEIEALGGMTKAIENGMPKLRIEQAAARKQARIDSGAEIIVGVNKHQRPNDEPLHI
                     LKVDQAKVLTAQLKKLNRVKQERDQAAVQIALDNLTQAAKTDGKNLLALAITAAKQRA
                     TLGEISEALVKEFGRYQAQIQTFSGVYKKEISNDQWFEKAQKAVREFALQEGRQPRIM
                     VAKMGQDGHDRGAKVVATGYADLGFDVDVGPLFQTPEETAKQAVENDVHFLGVSSLAA
                     GHMRLVPQVIQALADLGRRDIMVIVGGVIPEDDHKALYEAGVVAIYGPGTNLSQAALE
                     LIEILMGTSPETNQ"
     gene            3542..4423
                     /locus_tag="DHV98_01485"
     CDS             3542..4423
                     /locus_tag="DHV98_01485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HCK05062.1"
                     /translation="MDYTQKMLQADALKGKTIVVTGGGSGLGKAMTTYFLELGANVVI
                     SSRNQEKIDLAAKELIEQTGGSVLAVPCDVRHYDQVEELVKKACDTYGSVDVLVNNAA
                     GNFISPTERLSANAFDTIIDIVLKGTKNCTLAFGKHWIAQKQTQKVVLNIVTTYAWTG
                     SAYVVPSATAKAGVLAMTRSLAVEWAKYGMRFNAIAPGPFPTKGAWDRLLPGNLKEQF
                     DLAKKVPLKRVGAHQELANLAAYLVSDFSAYINGEVITIDGGEWLKGAGQFNLLEDIP
                     EELWDMLEAMIRAKKGN"
BASE COUNT         1311 a          994 c         1038 g         1127 t
ORIGIN      
        1 ctgggtgttc acgcgatcct ttatgctgaa tcaggggcca gtaacgtcca gcaattggcc
       61 tacagtatgg ctcaagccaa tgaaacctta gaacaattaa gtggatatgg ctctttaccc
      121 aaaagtcttt tattgaactt cagttttggt attggtccga attacttttt cgagattgct
      181 aaacttcgtg ccatgcgccg cttgtgtact ctgctcggac gaattcacga tagagaaatt
      241 aagtgtcata tcacggcatt gcctgcacag cgattcatga ccgtttacga ttttaacaac
      301 aatctattgc ggcacagttc agcaatgatg gcaggaatcc tcggtggggc aaacgcctta
      361 tgcaatctgc cctacgacca tcactacaaa aaaagtcatg aattctcaca aagtttggcc
      421 gaaaaccaac tctttattct agagtccgaa gtatttcaag acatcgatgc ccgggtgacc
      481 aatggcgcct attacattga acaactcact gaaaaattag cggaacaggc cctggcttta
      541 tttaaatcca tcgaggcttc agggggttgg cttaaagcca taaaacaagg aacgctacaa
      601 cgaaaaatta aagaacaaca cgagaaatct gtgcatgcac tagattcctt tgatgcggtg
      661 gttgttggca taaataaata cgcagattcc actcaaaaaa tgaaggatca attagaattg
      721 tatccatttc aaaaaatgaa ccctcaaaag actttggttg cgccgattgt tgcgcgccgc
      781 ttgacgcaaa agtttgaatt acaaagatta aatgatgaaa aaaaagcgta atatttttaa
      841 tgattatccc tcaatgaata aagcattctt tggggttttc ttgagtttaa ttttgtccct
      901 caatgcatgt cagcaaggac cagagtatcg ctttcaagat gagcctaagg tcgtggcatg
      961 ttccgagatg cccgaggact ttatgcatga gttactctac agctttagag aagatatagg
     1021 cgctttttac aatcagtata cagactacat caaaggcagc cgaagctatt attttgaggc
     1081 ttatggacaa tatgtctact ttggtttttc gggaacagcc cgctttgacg atattgcttc
     1141 tgatcacagt cgtgccctac ttcaggaact taggaaagaa aaagattttt ggatcattaa
     1201 agacaaacaa gagcgcctga actacaatca tccttatctg cgctgtctgt tagacggtat
     1261 tgccgatgac gacctgagga tatcactaca aaatttacga caggccaaat cgcttacgcc
     1321 agaactcatt gcggaaacca tgagaatcaa tgtccaaaaa gtaatttctg accctaactt
     1381 atccatgtat ctagcccttg atggatttta tcagcccttg attaatcgca gtgctaaaaa
     1441 atgagtcaac gtaaagcggt agcacatatt actctagatg acgggcctga atgggaccaa
     1501 cacacgcaat ccacggaagt cgatgaattg tctgcctatg gggctggagc acctcctttt
     1561 ttacgaggac cctatgcgac gatgtatgtc caaagaccct ggaccgtacg tcaatacgcg
     1621 ggattttcta ccgcggaaga gagcaatgac ttctatcgca aaaacttagc tgcgggacaa
     1681 aaaggacttt ctgtagcctt tgatttaccg acccaccgag gctatgacag cgatcatcct
     1741 cgagtaacgg gcgatgtggg tatggccggt gttgccatag acaccgtaga cgacatgaag
     1801 atactctttg accaaattcc attggacaag atgagcgttt ccatgaccat gaacggcgct
     1861 gttttgccga ttatggcgtt ttacattacg gccgcacaag agcaaggcgt cccaccagag
     1921 caactttcag gaaccatcca aaatgatatc ttgaaagaat ttatggtgcg caacacttac
     1981 atctatcctc cagcagcatc gatgcgcatt gttcgcgata tctttaagta taccagccaa
     2041 aatatgccca aattcaactc aatttcaatt tcgggctacc acatgcaaga ggcaggcgcc
     2101 acagccgaat tagagctggc ttatacctta gccaatgggc ttgaatacgt cagagaaggt
     2161 ttagcggcag gattgcacat tgatgatttt gccccgagac tttctttttt ctggggcatc
     2221 ggtatgaatc attttgagga aattgccaaa atgcgcgccg cccgcatgct ttgggctaaa
     2281 atcataaaga gttttgcacc caaaaacaat aaatcgatgg ccttgcgcac gcattgtcaa
     2341 accagtggat ggagcctaac ggctcaagat ccatttaaca acgtcacccg cacggccgtc
     2401 gaggccttag ctgcggtctg tggcggtacc caatcgctac ataccaatgc actcgacgaa
     2461 gccttagcct tacccaccga attttcagca cgtattgcac gcaacaccca gctattttta
     2521 caacatgaaa cccaagttac gcgcagtgtt gacccttggg cagggagctt tgagctagag
     2581 cgcagaacca agcaattaat ggaaaaagct tgggcgttaa ttgaagaaat tgaagcctta
     2641 ggagggatga ccaaagccat tgaaaatggc atgcctaaat tgcgcattga gcaagccgcg
     2701 gcgcgcaaac aagcccgaat agattccgga gcggaaatta ttgtcggggt aaacaagcac
     2761 caacgcccta acgatgagcc cctgcacatt cttaaggtgg accaggcaaa ggttttgacc
     2821 gcccagctga aaaaactaaa tcgtgtgaaa caagagcggg accaggcggc ggttcaaatt
     2881 gcattggata atttaaccca ggccgcaaag accgatggca aaaatttatt agctttagcc
     2941 ataacggcgg ccaagcagcg agcgacttta ggtgaaatat cagaagcgct tgttaaggaa
     3001 tttggacgtt atcaggcaca aatacaaacc tttagcggcg tgtacaaaaa agaaataagc
     3061 aacgatcagt ggtttgaaaa agcacaaaag gccgtgcggg aatttgccct tcaagaagga
     3121 cgtcaacccc gtattatggt ggctaaaatg ggtcaggacg gacatgaccg cggggcaaaa
     3181 gtcgttgcga ccggttatgc cgatttaggc tttgacgtag acgtaggtcc tttgtttcag
     3241 accccagagg aaacagccaa acaagctgta gagaatgatg ttcacttttt aggggtatcg
     3301 tcactggccg ctggacatat gcgtttggtt ccccaagtga tccaagcctt agcagattta
     3361 ggccgtagag atataatggt catcgtaggg ggcgtcattc ctgaagatga tcacaaagcg
     3421 ctttatgagg ctggtgtggt tgcgatttac ggtccgggta ccaacctgag tcaggccgct
     3481 ttagaactca tcgaaatact catgggcaca agcccggaaa ccaaccaata atttaaatac
     3541 tatggattat acccaaaaga tgcttcaggc ggacgcccta aaaggcaaaa caattgttgt
     3601 taccggtggc ggaagtggac tgggtaaagc catgaccact tactttttgg aactcggcgc
     3661 caatgtggtc atcagctccc gaaatcagga aaaaattgat cttgcagcaa aggaactaat
     3721 tgaacaaacc ggtggctctg ttttagcggt gccttgtgat gtacgtcatt acgatcaagt
     3781 agaagaattg gtaaaaaagg cttgtgatac ctacgggtca gtcgatgtcc tggtcaataa
     3841 tgcggcgggg aacttcattt cacccacaga acgcctttcg gctaacgctt ttgacaccat
     3901 tatcgacatc gtcttaaaag gaaccaaaaa ctgcactttg gcttttggaa aacattggat
     3961 tgcccagaaa caaactcaaa aagtcgtttt aaatattgtg accacttatg cgtggactgg
     4021 ctcggcctac gtggtgccaa gtgccactgc caaggccggc gttttggcca tgacccgctc
     4081 gctggccgta gaatgggcca aatatgggat gcgttttaat gccattgccc cgggaccatt
     4141 tccgaccaaa ggtgcctggg atcgcttgtt gcccggcaat ctaaaagaac aatttgattt
     4201 ggctaaaaaa gttcccttaa agcgtgttgg ggcgcatcaa gaattagcca atttggcggc
     4261 ttatttagtt tctgattttt cggcttatat caatggagag gtcatcacta tagatggcgg
     4321 tgaatggctt aaaggcgcag gtcaatttaa tttgcttgaa gatattccag aagaactttg
     4381 ggatatgtta gaggcgatga tccgcgcaaa aaagggaaat taattcctca aaataattca
     4441 tcttcagcgg cttaaatttt attattgggg
//
LOCUS       DPUP01000044            4976 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13696,
            whole genome shotgun sequence.
ACCESSION   DPUP01000044 DPUP01000000
VERSION     DPUP01000044.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4976)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4976)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4976
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            4..1227
                     /locus_tag="DHV98_01490"
     CDS             4..1227
                     /locus_tag="DHV98_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HCK05063.1"
                     /translation="MINIHQLLQIREPEVSFVAGAEMRDLPLIQNAWLLIDKDQIADF
                     GPMETAPLNATKNIIDCADRVVMPTYCDSHTHIVYAGERVDEFVQRLEGKSYQEIAAL
                     GGGILNSAARLDKTSEKQLYEQAAQRLELCAYQGTGALEIKSGYGLNLEAELKMLRVA
                     KRLSEKYPVAIKTTFLGAHALPELYKNQKDEYVQQVCKEMIPEVAAQKLADYIDVFCE
                     EGYFDLEDTEKILSAGARFGLKGKIHVNQFNAIGGVALGVAMEVLSVDHLEELIEEDL
                     MALENSQTMPVALPGCSLFLDIPFTPARAIIDRGLPLALATDFNPGSAPSGNMNLVVS
                     LACMRMKMTPAEALNAATINGAYAMGLEATHGSITKGKKASLIITDPLKDFSHLPYDF
                     GQNHIDQVILNGRLL"
     gene            1224..>2134
                     /locus_tag="DHV98_01495"
     CDS             1224..>2134
                     /locus_tag="DHV98_01495"
                     /inference="COORDINATES: protein motif:HMM:PF00491.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HCK05064.1"
                     /translation="MTALRYIDPQYIDQLTIKRPGEPRLGEVLSLITSEKDLQTSKAR
                     YLLLGIPEDIGIRANGGRPGAAKTWAAFLNYFCSLPAATNSPLAQVALLGTIECNDLM
                     EESLTLDWRDKNDQKTFNHLLLTLDKRVDEVIQPLIADGYIPVVIGGGHNNALGLLRA
                     SSKALNQGMHCLNIDAHTDLRNDEYRHSGNGFQRAILENDLVQYGIFGLHEHTLSPGI
                     MELIALKNNQINYLALNKWLDTPCEARNDLFKRWAEPIIHDQFGLELDLDVIVNMGSS
                     AQSPDGLSLAEVRTIVRILAGHKNLRY"
     assembly_gap    2135..2227
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2324..2965)
                     /locus_tag="DHV98_01500"
     CDS             complement(2324..2965)
                     /locus_tag="DHV98_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HCK05065.1"
                     /translation="MQDSFIHKGKRKQLLAKLRQKGISDEQVLEAMDQVPRHLFMDSG
                     FLDHAYSDKAFPIAADQTISQPFTVAKQTELLRCAAGQKILEIGTGSGYQSAVLVALG
                     VQLYTIERQNELFKKSSLLLKKMGFSPKKLIFGDGYKGYAEQAPYDGIIVTAGAPFVP
                     MPLLAQLNIGGRLVIPLGEKDQIMTVFERVSEKKFDKSTHGPCKFVPLLADKN"
     gene            3100..4065
                     /locus_tag="DHV98_01505"
     CDS             3100..4065
                     /locus_tag="DHV98_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCK05066.1"
                     /translation="MLKAGVFGAGHLGKIHLKLLQQSERFELVGFYDADQELAKEIEK
                     TFGYTYFERPEDLINACDLIDIVTPTTHHFDGAMSVLNAGKHVFIEKPITETTDQAET
                     LIALAKQKGLKGQLGHVERFNPAFTAVKDKIQSPMFIETHRLAEFNPRGTDVPVVLDL
                     MIHDIDAVLSVVKSPVKQVSASGVVVISETPDIANARIEFENGCVANLTASRISMKKM
                     RKVRFFQKDAYISVDYLDKTCEVVKMKNAPEHPDDFAMILSNAEGQKKQIYFDNPVIG
                     SNNAILDELESFADAIEKNTVPIVDLNDGAQALRVALMVIESFKK"
     gene            4070..4957
                     /locus_tag="DHV98_01510"
     CDS             4070..4957
                     /locus_tag="DHV98_01510"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480116.1"
                     /note="converts (S)-3-hydroxybutanoyl-CoA to
                     3-acetoacetyl-CoA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HCK05067.1"
                     /translation="MKNVAVIGAGTMGNGIAHTFAQNDFRVQLIDVSQQALDKGLSTI
                     EANLDRMLAKGSITQEIKTQTLANITTYTSLEAGVEYASLVVEAATEQEALKKSIFKD
                     LDRFCPDDTILATNTSSISITAIAAVTNRPDRVIGMHFMNPVPLMKLVEIISGYSTSQ
                     ETFQVVKEMSEKLGKTPVSVQDYPGFVANRILIPMINEAIFTLHTGVAGVKEIDQIMK
                     LGMAHPMGPLQLADFIGLDVCLSILNVMHQGFKESKFAPCPLLVNMVQAGKLGVKSKE
                     GFYDYSESRKAEKVAARFA"
BASE COUNT         1428 a         1065 c         1095 g         1295 t
ORIGIN      
        1 cttctgatca atattcatca acttttgcag attcgtgaac ccgaagtgtc tttcgttgcc
       61 ggagcggaaa tgcgtgattt gccccttatc caaaatgcct ggttacttat tgataaagat
      121 cagattgccg attttggccc tatggaaaca gcccccttaa atgccacaaa aaacataata
      181 gattgtgcgg accgcgtcgt aatgccgacc tattgtgact cccatacgca tatcgtatac
      241 gccggtgaac gcgtggatga atttgttcag cggcttgagg gcaagagtta tcaagaaatt
      301 gcagcacttg ggggcggtat cttaaatagt gccgccagac tggacaaaac ttctgaaaaa
      361 caactttatg aacaagctgc ccagcgatta gaactctgtg cctatcaagg aaccggtgcc
      421 cttgaaataa aaagtggcta cggcctcaat cttgaggctg aacttaaaat gcttcgcgtg
      481 gccaaacgtt tgtcagaaaa gtatcccgta gccattaaaa cgactttttt gggggctcat
      541 gccctacccg aattatacaa gaatcaaaaa gacgagtacg tccaacaggt ctgtaaggag
      601 atgattccgg aagtggcggc tcaaaaactc gccgattaca tcgatgtctt ttgtgaggaa
      661 ggttattttg atttagagga tacagagaaa atattgtctg ctggcgccag atttggttta
      721 aaagggaaaa tccatgtcaa tcaattcaat gccattgggg gcgtagccct gggtgtggcc
      781 atggaagtgc tcagtgtaga tcatctcgaa gaactgatcg aagaagacct catggcttta
      841 gaaaatagtc agaccatgcc ggtggccctg ccgggttgtt ctctttttct cgatattcct
      901 tttacgccgg ctagagcaat tattgaccgg ggcttacccc ttgccttagc gacagatttt
      961 aatcccggct cagcgccttc aggcaatatg aatttagtgg tttctctggc ttgtatgcgc
     1021 atgaaaatga ctccagccga agcgctaaac gcggccacca ttaatggggc ctatgccatg
     1081 ggactggaag cgactcatgg ctcaatcacc aaaggaaaaa aagccagttt aatcattacg
     1141 gacccattaa aggatttcag ccacctcccc tatgatttcg gtcaaaatca tattgatcaa
     1201 gtaattttaa acggacgact gttatgacgg ccttacgtta tattgaccca cagtatatcg
     1261 atcaattgac catcaaaaga ccgggagaac cgcgtcttgg agaggtcctc tcactgatta
     1321 cctcagaaaa agatttacag acctctaaag cccgctatct cttactgggt attccagaag
     1381 acattggcat cagggccaat ggtggtcgcc caggagcggc taaaacttgg gccgcctttc
     1441 tgaactattt ttgcagtctg cccgcggcaa caaacagtcc cttggcacaa gtcgccctac
     1501 tgggaactat tgagtgtaat gacctcatgg aagaaagctt gactttggat tggcgggata
     1561 aaaacgatca aaagactttt aatcatttac tgctaacctt agacaaacgt gttgatgagg
     1621 tgatccaacc cttaattgcc gatggctata ttccggtggt gattggagga ggccacaaca
     1681 acgctcttgg attgcttaga gccagcagca aagccctaaa tcaaggaatg cattgcctaa
     1741 atatcgatgc ccataccgac ctgcgtaatg acgaatatcg ccatagtggg aatggttttc
     1801 aacgggctat tttggagaat gatttagttc aatacggcat ttttggactc catgagcata
     1861 cactctcacc ggggatcatg gagctgatcg cgcttaaaaa caatcaaata aattacctcg
     1921 ctctgaacaa gtggctcgat actccctgtg aagcgcgaaa tgatcttttt aagcgttggg
     1981 cggaacccat tattcacgat cagttcgggc tcgaattaga cttggatgtt atcgtcaata
     2041 tgggaagcag tgcccagagt cccgatggtt tgtcgttagc cgaagtcaga acaatagtcc
     2101 gaattttggc aggacataaa aacctgcgct atatnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnngct atgtgaaggc gcccctgaac ttgggcttta ccccacacaa gtcgtaaaaa
     2281 ccttaggggc cttatgtttg gatctattgg tttagatcac cacttagttc ttatcggcta
     2341 aaagcggcac aaacttgcag ggcccatggg ttgatttgtc aaatttcttt tcagagacgc
     2401 gctcaaaaac cgtcatgatt tgatcctttt ctccaagggg aataaccaac cgtccgccaa
     2461 tgtttagttg tgccaatagg ggcattggga caaacggcgc ccccgcagtg acgataatcc
     2521 cgtcataagg ggcttgttct gcatacccct tataaccatc gccaaaaatt aactttttag
     2581 gactaaatcc cattttttta aggagcaaag aggacttctt aaacaattca ttctggcgtt
     2641 caattgtata gagctggacc ccaagagcca ccaaaaccgc actttgatag ccacttccgg
     2701 ttccaatttc aagtattttt tggccggcag cacatcgcaa taattcagtt tgtttggcca
     2761 cagtaaaagg ctgggaaatt gtttgatctg ctgcgatagg aaaagccttg tcactatagg
     2821 cgtggtccaa aaaaccactg tccataaata aatgccttgg tacctgatcc atcgcctcaa
     2881 ggacctgctc atcgctgatg cccttttgcc ttaatttagc gagcagttgc tttcttttgc
     2941 ccttgtgtat aaaagaatct tgcatgaaat actattgaaa actgcgctga attatatcgt
     3001 tcaaatccaa aacaaaacta agaaacagat ggctaaattg gctcagttca acaggctatt
     3061 tttgggtaaa aacggtatct ttgttaaaat tcaaaatgca tgctaaaagc aggagtattt
     3121 ggcgcaggcc acttaggaaa gattcacctc aaattactac aacaaagcga gcgatttgag
     3181 ttggttggtt tttatgatgc cgatcaagag ttagccaaag aaatagaaaa aaccttcggt
     3241 tatacgtact tcgaacggcc tgaagattta atcaatgcct gtgatttaat tgatattgtc
     3301 accccgacca cccatcactt tgatggcgcc atgtctgtgc tcaatgcggg taaacacgta
     3361 tttattgaaa agccaattac tgaaaccact gaccaagcgg aaacgctaat cgccttagca
     3421 aagcaaaaag gactcaaagg tcaactgggt catgtcgaac gattcaatcc agcgtttacc
     3481 gcggttaagg acaagattca gtcaccaatg tttatcgaaa cacaccgact tgcagagttt
     3541 aatccgcgag gcactgatgt acccgtggtc ttggacttaa tgattcacga tattgatgcc
     3601 gtgcttagtg tggtaaaaag ccccgtaaaa caggtcagcg caagcggtgt tgtggtgatc
     3661 tctgaaaccc ccgatatcgc caatgccaga attgagttcg aaaacggatg cgtggccaat
     3721 ttgacggcaa gtcgtatctc catgaaaaaa atgcgcaagg tgcgcttctt tcaaaaagat
     3781 gcctatatat cggtggacta cttggataaa acctgtgaag ttgtaaaaat gaaaaacgct
     3841 ccggagcatc ctgatgattt tgctatgatt ttatccaatg cagaggggca aaaaaaacag
     3901 atatatttcg ataatccggt aatcggaagc aataatgcca tcctcgatga attggagtcg
     3961 tttgctgatg ccattgaaaa aaataccgta cccattgtcg atttaaatga tggggctcaa
     4021 gcattaaggg tcgccttgat ggtaattgaa agttttaaaa aatagaatta tgaaaaatgt
     4081 agccgtaatt ggcgcaggaa ctatgggcaa cggtatcgct catacttttg ctcagaatga
     4141 ttttcgcgtt caactcattg acgtgtcgca acaagcctta gacaaggggc tcagtaccat
     4201 agaggctaat cttgatcgaa tgttagcaaa aggcagcata actcaagaaa taaaaactca
     4261 aactttggcg aacattacga cctatacgag tcttgaagct ggggtggaat atgcgagctt
     4321 agtcgtggaa gccgctactg aacaagaagc gctgaaaaaa agtatattca aagatttaga
     4381 ccgcttttgt cccgatgata cgattctagc gaccaatacc tcatcgattt ccattaccgc
     4441 tattgcggcg gtgaccaatc ggccggatcg tgtcattggc atgcacttta tgaacccagt
     4501 tcctttaatg aagctggtcg aaataatttc gggatactcg accagtcaag agacttttca
     4561 ggtcgttaaa gagatgtcag aaaaattggg caaaacaccg gtgtccgttc aagattaccc
     4621 tggttttgtt gccaatagaa tattgatccc aatgatcaat gaggccattt tcacattgca
     4681 cactggcgtg gctggcgtca aagaaattga ccagatcatg aaactcggaa tggcacatcc
     4741 tatgggccca ttacaacttg cggactttat cggtctcgat gtttgcctct ccattttaaa
     4801 tgtaatgcat caagggttta aagaatctaa atttgccccc tgccctttgc ttgtcaatat
     4861 ggttcaagcg ggtaaacttg gggtaaaaag taaagaagga ttctatgact acagcgaaag
     4921 cagaaaagct gaaaaggtcg ctgctcgatt tgcttaataa acaactatga gtgatt
//
LOCUS       DPUP01000045            5194 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1221,
            whole genome shotgun sequence.
ACCESSION   DPUP01000045 DPUP01000000
VERSION     DPUP01000045.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5194)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5194)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5194
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..619
                     /locus_tag="DHV98_01515"
     CDS             <1..619
                     /locus_tag="DHV98_01515"
                     /inference="COORDINATES: protein motif:HMM:PF11734.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05068.1"
                     /translation="LAGLCREYGLKAGQDVGQLAQAQSGARLYTQTHELLKDRGVILI
                     NALGNQQGSAQKKNQINPPDALDLTGLSPQVDDRDQGLILDKEGRQTPPQQDSISFRF
                     EQVTELTNSGPNVIFVPTQMLVFPLKLRHWQKGDVFYPFGGPGKKKISKYFKDERLSL
                     VRKNKIWLLECDGRIMWVVGLRADERFRVTNQNREITKITWLQGD"
     gene            759..>1252
                     /locus_tag="DHV98_01520"
     CDS             759..>1252
                     /locus_tag="DHV98_01520"
                     /inference="COORDINATES: protein motif:HMM:PF11412.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05069.1"
                     /translation="MRLNFLILLSILVTSFSLSAQEFINPVQWSVSVEPTDQGHNLIM
                     SAKIDQGWHLYSQTQFGDEFEGPIRTEFYYNASDSTYVLQGPTQEPEVEPVYDPVFEL
                     DVIYFEDEVSFVQPIKIINAQGNILTAEVYYSVCDAEKCLPPDTKTFTLNLATMDLLQ
                     QELVL"
     assembly_gap    1253..1350
                     /estimated_length=98
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1351..2833
                     /locus_tag="DHV98_01525"
     CDS             <1351..2833
                     /locus_tag="DHV98_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008991436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05070.1"
                     /translation="SQALELKLKGQENYTPEEEKQQGLGTIFFLGFIGGLLALLTPCV
                     FPMIPLTVSFFTKSAQNKATGTIKAITYGAFIFLIYVLLSIPFHLLDSVQPEILNNIS
                     TNVYLNVAFFVIFIAFAFSFFGYYELTLPQSWSAKMDDKANQVGGYVGIFFMALTLAI
                     VSFSCTGPILGSLLGGSLTSDGGAIQLTAGMGGFGLALALPFALFALFPNWLNALPKS
                     GGWLNTVKVVLGFLEVALAFKFLSNADLVEHWGLIKRELFIGIWMVCAAGIALYLFGF
                     IRFPHDGPKGQKIAKGNWIFGLLSVAAFIYLAPGLTNTPAANLKLLSGFPPPLFYSYY
                     DKGTSAPLGLEGYKDFDQGMAAAKASGKPLMIDFTGWACVNCRKMEEQVWSTPEVFEL
                     LSQEYVLVSLYVDDRKALLADEQFSYAQPNGRIKKLKTVGDKWATFQTINFKNNSQPY
                     YILLDEDLNMLNKPVGYTPDVDEYAEWLTAGLEEFQRTHQGAE"
     gene            2913..3578
                     /gene="pgmB"
                     /locus_tag="DHV98_01530"
     CDS             2913..3578
                     /gene="pgmB"
                     /locus_tag="DHV98_01530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HCK05071.1"
                     /translation="MNNEKQLGVIFDLDGVIVDTAKHHYVAWQQLAQAQGWTFTAQDN
                     EQLKGVSRVRSLELILQWNKAQIDPEVFDRLLIQKNALYLTLIADMDPSERLPDVQRV
                     LQTFKDHGCKIALGSASKNARPILDKIELTPYFDAIVDGTNVSKAKPDPEVFLQAANQ
                     LGIAPEDCVVFEDAVAGIQAAKAAGMRAYGIGDPEFLNQADRVFHNFTQLDDTFIEQN
                     IIG"
     gene            3578..5156
                     /locus_tag="DHV98_01535"
                     /pseudo
     CDS             3578..5156
                     /locus_tag="DHV98_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549790.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    3849..3901
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1371 a         1072 c         1228 g         1372 t
ORIGIN      
        1 attggcaggc ttgtgccgtg agtacgggct caaagcgggg caggatgtgg gtcagttggc
       61 tcaggcgcag agcggggcac gtttatatac ccaaacacat gaattactca aagaccgcgg
      121 ggtgatttta attaatgctc ttgggaatca gcaggggtca gctcaaaaaa agaatcaaat
      181 taatccccct gacgcccttg atttaactgg cttgagcccg caggttgatg accgagatca
      241 agggttaatt ttagataaag agggacggca aactccgcca caacaagact caatttcttt
      301 tcgctttgaa caggttacgg agctgactaa ctcagggcct aatgttattt ttgtgccgac
      361 ccaaatgctc gtctttccat taaagctccg tcattggcaa aagggtgatg ttttttaccc
      421 ctttggtggt ccaggaaaaa agaaaataag caagtatttt aaagatgaac gattatcttt
      481 agtccgcaaa aataaaatct ggcttttaga atgcgatgga cgcatcatgt gggtggtcgg
      541 tttgcgggct gatgagcgct ttcgcgtgac caatcaaaac cgagaaatca ccaaaatcac
      601 atggctacag ggcgattaat cgccccttag cgacttgagg caaagtaaaa ccaattaact
      661 taaaaaaatt ggctgagtac ttaaagaaga aaaagaataa accaggcgtt aaccgatatc
      721 gcgtaaacaa cgaaccaaca acaaataatt gatttgacat gagattaaat tttttgattt
      781 tactgagtat tctcgtgacc agcttttcgt taagtgccca agaattcatc aatcctgtac
      841 aatggtctgt ctcggtagag cccaccgatc agggacacaa cctaatcatg tctgccaaaa
      901 tagatcaggg atggcacttg tacagtcaaa cacaatttgg cgatgagttt gaaggtccta
      961 ttcggacaga gttttattat aacgcatcag attcgaccta tgtactgcaa ggcccgactc
     1021 aagaacctga ggtggagccc gtttacgatc ctgtttttga gctcgatgtc atttatttcg
     1081 aggacgaagt aagctttgtt cagcctatta aaattatcaa tgcccagggg aatatcttaa
     1141 ccgctgaggt gtattactct gtctgtgacg cagagaaatg cttgccgcct gacacaaaaa
     1201 catttacact gaatcttgcg actatggatt tactccagca agaactggtg ctnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gtctcaggcc ttagagctta agctcaaggg
     1381 tcaagaaaac tacaccccag aggaggaaaa gcagcaggga ttagggacca tattcttttt
     1441 aggctttatc ggtggtcttc tggcattgct taccccttgt gtcttcccga tgattccatt
     1501 gacggtttca tttttcacta aaagcgctca aaacaaggcc acagggacca taaaagccat
     1561 tacctacggc gcgtttatct ttttgatcta tgttcttttg agcattcctt ttcacttatt
     1621 ggattcggtc caacctgaaa tcctcaacaa tatctctaca aatgtttacc taaacgtggc
     1681 attttttgtg atttttattg cttttgcctt ttcgtttttt gggtattatg aattaacact
     1741 accgcagagt tggagtgcca aaatggacga caaagccaat caagtcgggg gttatgtggg
     1801 gatctttttt atggcgctca ccctggcgat cgtctctttt tcttgcacag ggcctatcct
     1861 tgggtcttta ttaggaggtt cgctgaccag cgatggtggg gccattcagc tcactgcagg
     1921 gatggggggc tttggtttag ccttggcctt gccgtttgcc ttgtttgctt tatttccaaa
     1981 ttggcttaat gctctgccca aaagtggcgg atggctcaat acggtcaagg tcgtcctcgg
     2041 atttttagag gtggccttgg cgtttaaatt cttgtctaac gcggacctgg tagaacattg
     2101 gggattgatc aaaagagaac tctttattgg gatttggatg gtttgtgctg ctgggattgc
     2161 gctttaccta tttgggttca ttcgttttcc acacgatggg ccaaaaggac agaaaatcgc
     2221 caaagggaat tggatctttg gtttgttgag cgtggccgcg tttatctacc tcgctccagg
     2281 gctcaccaat acgcccgcgg caaatctcaa gctcttgagt gggtttccgc cgccgctttt
     2341 ttacagctat tacgacaaag gtaccagtgc gcctttaggg ctggaaggtt ataaagattt
     2401 tgatcagggc atggccgcag caaaagcttc tggcaaaccg ttaatgattg attttacggg
     2461 atgggcctgc gtcaattgcc gaaaaatgga agagcaggtc tggagtactc cagaggtttt
     2521 tgagttgctc tctcaggagt atgttcttgt gtcgctttat gtggacgatc gtaaggcgct
     2581 tttggctgat gagcagttta gttatgctca gcccaatggc cgcattaaaa aacttaaaac
     2641 cgtaggggat aaatgggcga cctttcaaac cataaatttc aaaaataact cgcagccgta
     2701 ttacatactg ctcgatgaag atctgaatat gctcaataaa ccagtaggtt atacccctga
     2761 tgtcgatgaa tacgctgagt ggttgaccgc gggcctagaa gaatttcaaa ggacgcatca
     2821 gggcgcagag tagttttgta attagggcct tgatcccaaa gaaaaattcc ttgagcctga
     2881 actcagggat gatcgtgaag aggaatgtgt ctatgaataa tgaaaagcaa cttggggtaa
     2941 tttttgacct ggacggcgtt attgtcgata ccgcaaaaca tcattatgtg gcctggcaac
     3001 agctggcgca agctcaaggc tggactttta ccgctcaaga taacgagcag ctcaaaggcg
     3061 tgagccgcgt caggagcctt gaactgattc ttcagtggaa taaggcacag attgacccag
     3121 aggttttcga tcgactgctt atccagaaga acgcgcttta tttgaccctg attgccgata
     3181 tggatccttc agagcggctc cctgacgtgc agcgcgtttt gcagaccttt aaagatcatg
     3241 gatgtaaaat agcgttgggt tcggccagca aaaacgcgcg gccaattttg gataaaattg
     3301 agctcacgcc gtatttcgat gccattgtag atgggacgaa tgtaagtaag gccaaaccag
     3361 acccggaggt ctttcttcag gccgcaaatc aactggggat cgctccagaa gactgtgtcg
     3421 tgtttgaaga tgctgtggct ggtattcaag cggcaaaggc cgcgggtatg cgcgcctatg
     3481 gcattggtga ccctgagttt cttaaccagg ctgatcgcgt atttcataac ttcacccagt
     3541 tagacgatac atttatagaa caaaatatta ttggttaatg aatatcaatt atatcaaagc
     3601 agacccttgg tgtctcatag aacaaggttt tgaccccaaa catgttgagc catccgagag
     3661 cttattttct ctgggcaatg gggcaatggg gcagcgggcc aattttgaag aacaatacag
     3721 cggtgccacc tttcaaggaa gctatatcgc aggagtttat tatccggaca agacccgtgt
     3781 agggtggtgg aagaacggtt atcctgaata ttttgccaaa gtactcaacg cacccaattg
     3841 gatcggtann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 ncaaagtact caatgcaccc aattggatcg gtatcgatgt atttgtcaat ggtcagcctc
     3961 ttgatttaaa cacccttgaa gtactcgatt ttcagcgggt actcagcatg aagactggcc
     4021 tttatcagcg tgattttaag gtgaaattgc cttctggcgc gcttatttct gttcaagccc
     4081 gtcgcttttt gagttttaaa acgccagagc tcggggccat tgattatcag attactttat
     4141 tggagcatcg gggatcagtg agcgcccgat cagaaaatga gtctaagggt tcggtcgaaa
     4201 ttaccgtaaa accttatatc gatgcaggaa taaagaatcg agacagcaat tgggatgacc
     4261 ctttttgggc ggttactgat ttgagctatg acggcgcttc aggctttatt ttggcccata
     4321 cgctaaagac tgagtttggg acgtgtactt atatgtcctc gcaagtcacg cataagggcc
     4381 gaaacattga tttaaccacc caaatacaag gagacaaacg cattgaaagc tgcgcaaccg
     4441 tgtcgttagc gcccggtgaa tccataattg tcaacaaatt tggcggctat acggtagatt
     4501 tatatcatgc aaagtccgaa ttgattgctg cagcaaaagc ccacataagc cgagcacaag
     4561 aacagggttt tgacacctta ctcaaggaac aagaagctgc ctggtcccac atatggcaga
     4621 gtgccgacat taccattgaa ggagatgtcc ctgcccagca ggccatacga tttaatattt
     4681 tccagcttaa ccaaacttat tctggtcagg atgcgcgatt gaatataggc ccgaaagggt
     4741 ttaccggtga aaaatacgga ggaagtacct attgggatac cgaggcctat tgtttgcctt
     4801 tttatatggc caccaaaaac caagaagtgg cccgtaacct attgacttat cgttataagc
     4861 aactcgataa ggccatagaa aatgccgcca aacttgggtt tcattcaggg gcagcccttt
     4921 acccaatggt gaccatgaat ggagaggaat gccacaatga atgggagatt acttttgaag
     4981 aaatccaccg aaatggtgcc attgcctttg ctatttttaa ttacgaacgc tatacacaag
     5041 atggcactta cctccctgag atgggcctgg aagtacttat tggcatcgcg cgattttggg
     5101 cgcaaagagc cggtttaagt ccggccaaag gacaagatcg gaagagcgtc gtgtagggaa
     5161 agagtgtaga tctcggtggt cgccgtatca ttaa
//
LOCUS       DPUP01000046            4034 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2261,
            whole genome shotgun sequence.
ACCESSION   DPUP01000046 DPUP01000000
VERSION     DPUP01000046.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4034)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4034)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4034
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..542
                     /locus_tag="DHV98_01540"
     CDS             <1..542
                     /locus_tag="DHV98_01540"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HCK05072.1"
                     /translation="AGVSYQSQEGVILTRHNHGDWPSQYYSEPITVNAVFRTGLNEAD
                     VIGLGQYPFYVFSFFADKRINYKSTIQLGVDFFFSDFLIHLIRYRQSAFPGDGIEPGL
                     DYRRIGVFLGHEFRFRKTAFVSQLGRYFYWPYEFENRLYNRLGLKRYFGKEHFFAAVT
                     LKAHWAKAEAVEFGIGYRL"
     gene            539..1327
                     /locus_tag="DHV98_01545"
     CDS             539..1327
                     /locus_tag="DHV98_01545"
                     /inference="COORDINATES: protein motif:HMM:PF10988.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HCK05073.1"
                     /translation="MRTGLKIRISAIYYALAVLGGLLFWGCDSDNAWDCFQTSGPTVQ
                     RTFNVDKFKKIIIWNRVQLIVSSGPQQSVVVESGENLMNEVLVRVEDSILKVSDRNSC
                     NYTRDYGITKVYVTSPVDSIEIRSSSGLPVIGQGPITFKKLTLLSEDREQEGEFHTDG
                     DFYFEDLDVTQLIIFANGTSKFFLGGRTNSANIGLYDGDCGIVAPDLEIKNLYLFHRS
                     TSKMVVAPTNLIQGRIVGLGDVICLTQPPVVNVEEEFTGRLIFQ"
     gene            complement(1388..2095)
                     /locus_tag="DHV98_01550"
     CDS             complement(1388..2095)
                     /locus_tag="DHV98_01550"
                     /inference="COORDINATES: protein motif:HMM:PF00005.25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated ABC transporter
                     ATP-binding subunit GldA"
                     /protein_id="HCK05074.1"
                     /translation="MLMTIKFEHIIKLYGAQKALDEVNFSIEKGQIIGLLGPNGAGKS
                     TLIKILIGLLHPDNGQLLQNDLALNTQSLEYKRRMGYLPEDNPLPQELFVKEYLSQTA
                     ALYALNPFDSAPLIQRTGLSSVQHKKIGALSKGFKQRLGLAAALIHEPELLVLDEPMT
                     GLDPNQIQEIRKLIQSLSPKTTVLLSTHILQDISAICDRILVLNQGKLVKDLALNELE
                     NTNDTAGLEALFTQWTS"
     gene            2314..3174
                     /locus_tag="DHV98_01555"
     CDS             2314..3174
                     /locus_tag="DHV98_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009640910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HCK05075.1"
                     /translation="MKIAIQGIQHSFHHQAVKELFEQQSYDLLCCDSFDATTQAVAKG
                     LAEFGVLAIENSIAGSILTNYNLLESGSFEIYDEVYLNIQMHLMALPKTRIQDITEVR
                     SHPVALLQCRDYLRQYQGQFRLVEGKDTASEAEQISKQQLQGIAAIAGKDVAEAFGLE
                     ILDSQIQDIKQNQTRFVLFGRPGSHSQKTPNKASLKFQLGHEVGSLSRALAVLSDYDI
                     NLTKIQSLPVLGMNWRYAFFVDVTFDNPEKFKQAIGVLQEGVKQFKLLGLYAQNKENI
                     PSKLGEKIEL"
     gene            3171..>3684
                     /locus_tag="DHV98_01560"
     CDS             3171..>3684
                     /locus_tag="DHV98_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HCK05076.1"
                     /translation="MNQSNQAREWLRAMNLGHPLVIAGPCSAETQDQLLDTARGLTKT
                     KTSVLRAGLWKPRTRPGNFEGVGALGLPWLKRAKDETGLLTTTEVAHPHHVELALEHD
                     VDLLWIGARTTVSPFIIQDIADALRGTNKVVLIKNPVNPDLSLWMGALERFENVGITQ
                     LGAIHRGFSTY"
     assembly_gap    3685..3867
                     /estimated_length=183
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3868..>4034
                     /locus_tag="DHV98_01565"
     CDS             <3868..>4034
                     /locus_tag="DHV98_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HCK05077.1"
                     /translation="AIDFQSRRPDVPLILDPSHMGGRRDLIFELSQTGLDLNYDGLMI
                     ESHIDPDNAWS"
BASE COUNT         1034 a          758 c          907 g         1152 t
ORIGIN      
        1 ctgcgggagt gagttaccaa tctcaggagg gggttatttt gacccgacac aatcatggcg
       61 attggccaag ccaatattac agtgagccta taaccgttaa tgccgtgttt cgaacaggac
      121 tcaacgaagc cgatgtcatt ggtctggggc agtatccttt ttatgttttt tcattttttg
      181 ccgataaaag aatcaattat aaaagtacca ttcaactcgg ggtagatttc tttttctcag
      241 actttttaat tcatttgatt cgctaccgcc aatccgcttt cccgggggat gggattgagc
      301 ccggtttaga ttatcgccgt attggtgtat ttttaggtca tgaatttcgt tttcgcaaga
      361 ccgcttttgt ttctcaattg gggcgttatt tttattggcc gtatgaattt gagaatagac
      421 tgtacaatcg tttagggcta aagcgatatt ttggaaaaga acattttttt gctgcagtta
      481 ctttgaaagc ccactgggca aaggcagagg ctgttgaatt tggtatcggg tatcgattat
      541 gagaacagga ttaaaaatca gaattagcgc aatttattac gccttggccg tactcggagg
      601 acttctattt tggggttgtg atagcgacaa tgcctgggat tgttttcaaa ccagtggacc
      661 tactgtccag cgcacgttta atgtcgataa attcaaaaaa ataatcatct ggaatcgggt
      721 acaattaatt gtctcgtctg ggccccagca gagtgtggtg gtcgagtctg gggaaaatct
      781 catgaatgaa gtgctggtgc gcgtggagga cagtattctt aaggttagcg accgaaacag
      841 ttgtaattat acgcgtgatt atggcattac aaaggtttat gttacctctc ctgtagattc
      901 catagaaatt cgttcgagtt ctggactccc cgtaattgga cagggcccga taacctttaa
      961 aaagctcacc ttgctttccg aggaccgcga gcaagagggt gaatttcata ccgacggtga
     1021 tttttatttt gaagatttag atgtcaccca gcttattatt tttgccaatg gtaccagtaa
     1081 gttttttcta ggggggcgca ctaattctgc caatattggt ctttatgatg gtgattgcgg
     1141 cattgtggcc ccggatttag aaatcaaaaa tctttattta tttcatcgca gtaccagtaa
     1201 aatggtcgtg gcaccgacca acttgattca aggccgtatt gtaggcctag gcgatgtgat
     1261 ttgtctcacc cagccccctg tggtcaatgt agaggaggaa tttacgggcc gtcttatttt
     1321 tcaataagaa actgcgttgg cactaaaatg gggacgcaac aagacttatt tttacgaagt
     1381 ccacttttta cgaagtccac tgggtaaata aggcctcgag ccctgctgta tcatttgtgt
     1441 tttccaattc atttaaggcc agatctttga ctaatttccc ctgatttaaa accagtatac
     1501 ggtcgcagat tgccgagata tcttgcaata tatgcgttga aagcaataca gttgtttttg
     1561 gactgagtga ttggatcaac tttcttattt cttgaatttg atttggatcc agtcccgtca
     1621 taggctcgtc caaaaccaag agttcaggtt catggatcag cgcagccgct aagccaaggc
     1681 gctgtttgaa ccctttggag agcgccccta tttttttgtg ttggactgaa ctcagtccgg
     1741 tgcgctgaat caatggtgcg ctatcaaagg ggttaagggc atacaaagcg gcggtttggc
     1801 tcaaatattc tttgacaaag agttcctgcg ggagcggatt gtcctcaggc agataaccca
     1861 tacgcctttt gtattcgaga ctttgggtgt ttagtgcaag atcgttttga agcagttggc
     1921 cgttatcggg atgcagtaga ccgattaaga ttttaatgag cgtcgattta ccggctccgt
     1981 tagggccaag gagtccgata atctgtcctt tttcaatcga aaaattgacc tcatccaggg
     2041 ccttttgtgc cccgtataat tttattatgt gttcaaattt tatggtcata agcattcgcc
     2101 gtaaaattaa agaataaaaa atcgttctaa agattttatg ttctgaatga taaagtatat
     2161 tttcgtcatt caatcctatc gatgaaaacg tacaacaaca tatttttctt ttatttcttt
     2221 tatacaagaa ccaaggcttt gtgttaattg tacgcaacaa taacgctaaa gcccgatcaa
     2281 ttgttcgggc tttttttatg aattatttat acgatgaaaa tcgcaataca gggaatacaa
     2341 cattcttttc accatcaggc cgtcaaggag ttatttgaac agcagtctta tgacttactt
     2401 tgctgtgatt cttttgatgc aaccacacag gcggttgcaa aaggcttggc agaatttggt
     2461 gtgttggcca ttgagaattc aattgctgga tcgatattga ctaattacaa tttgttagaa
     2521 tccggatctt ttgaaatcta tgacgaagtt tatttgaata ttcaaatgca cttaatggct
     2581 ttgccaaaga cccgaattca ggatattacc gaggtgcgtt cccatccggt ggcgctgctg
     2641 caatgtcgcg actatctcag acaataccag ggtcaattta gactggtgga aggaaaagat
     2701 acggcaagtg aagcagagca aatctcaaaa cagcaacttc agggaatagc cgccattgcg
     2761 gggaaagacg tggcagaggc ctttgggctg gagattttag acagtcaaat tcaagacatc
     2821 aagcagaatc agacgcgctt tgtgttgttt ggccgccccg gcagtcactc acaaaaaaca
     2881 cccaataagg cgagtcttaa gtttcagctc ggtcatgagg ttggttccct gagtcgggcg
     2941 ctggcggtcc taagcgatta tgacataaat ttgacaaaaa ttcagtcatt accggtactg
     3001 ggaatgaatt ggcgctatgc cttttttgtt gatgtgactt ttgacaaccc agaaaaattt
     3061 aaacaagcta ttggtgtttt acaagaaggg gtaaaacagt tcaaattact tggattatac
     3121 gcacagaata aagaaaatat acccagtaaa ttgggtgaaa aaattgaatt atgaatcaaa
     3181 gcaatcaagc acgtgagtgg ttacgcgcca tgaatctagg gcaccctctg gtaatcgcag
     3241 ggccttgcag tgcagaaact caagatcaac ttctggacac agctcgaggg ctgaccaaga
     3301 ccaaaacttc agttttgcgg gctgggctat ggaaaccgcg aacgcgccct ggaaattttg
     3361 agggcgtagg cgccttgggc ctgccttggt tgaaacgcgc caaggatgaa accgggcttt
     3421 taacgaccac agaggtggcc catccacatc acgttgagtt ggccttggaa catgatgttg
     3481 acctcctttg gattggtgcc cgaacgaccg tgtccccctt tatcattcaa gatattgccg
     3541 atgcgttgcg gggtacgaat aaagtagttt tgattaaaaa tccggttaat cctgatcttt
     3601 cactttggat gggtgcttta gagcgttttg agaacgttgg catcacacaa ttgggagcga
     3661 ttcatcgcgg attttcaacc tatgnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnngct attgactttc aaagcagaag acccgatgtg
     3901 cctttaattt tggatccatc ccatatgggg gggcgccgtg atttaatttt tgaactctct
     3961 caaacagggc tggatttgaa ttatgacgga ttgatgatcg agagtcatat tgatccagac
     4021 aatgcttgga gcga
//
LOCUS       DPUP01000047            3061 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9278,
            whole genome shotgun sequence.
ACCESSION   DPUP01000047 DPUP01000000
VERSION     DPUP01000047.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3061)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3061)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3061
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>220
                     /locus_tag="DHV98_01570"
     CDS             <1..>220
                     /locus_tag="DHV98_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05078.1"
                     /translation="EFRRVLFRSKVLSNYKKNANIPGFRKGHIPMGMVKKQFGKAVLI
                     EEVNKLIQEKLNEYLKKEEIDILGNPLP"
     assembly_gap    221..421
                     /estimated_length=201
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <422..1489
                     /locus_tag="DHV98_01575"
     CDS             <422..1489
                     /locus_tag="DHV98_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HCK05079.1"
                     /translation="ILGNPLPKNEAEIDWTGEDFSFEFELGLAPEFNVDVTKKATVHY
                     QIEADKAMIENQIKTIRNQYGKLIAKDKAEAGDELTGTFSNEEQEIDHKATFDLDLVK
                     GKKQREALVGAVVGTEVTLNTKDLFKEQKDLERMLGIGADKAKDLKTDVVFTIAEINK
                     REKAELNQELFDKLFGPGNVSSEKELKEKIKEDAERQFVQQSDQKLLNDVIDTLIDNT
                     KFDLPEDFLKRWIQSTGEAKLTQEEAAAEYERSVKGLRYQLIEGKLREEHEELQLKFE
                     DLNAYANEMIKMQMMQYGHPNPSDEEVTGIVARIMSNEDEVRRMSEQLNTKNLLAFFK
                     ANAKLKTKKVNYEDFIKQAYA"
     gene            1578..2261
                     /locus_tag="DHV98_01580"
     CDS             1578..2261
                     /locus_tag="DHV98_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013305244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HCK05080.1"
                     /translation="MNYAEEFKKFATKDQGISSTYYDKIVSSMTPVGLTPNIIEERQM
                     NIAIFDVFSRLMMDRIIFLGTGINDQGANIVQAQLLFLESVDSSKDIQIYINSPGGSV
                     YAGLGIYDTMQFIKPDVATICTGMAASMGAVLLCAGAAGKRSGLTHSRVMIHQPMGGA
                     QGQASDIEITAKEILTLRDELYAIIAHHTGQEVEKVHKDSDRDYWMKSDKALEYGMID
                     EILTRDKTK"
     gene            2263..>2381
                     /locus_tag="DHV98_01585"
     CDS             2263..>2381
                     /locus_tag="DHV98_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05081.1"
                     /translation="MTKEVLSCSFCGRKKAETNLLIAGNSAHICDQCIEQAHG"
     assembly_gap    2382..2552
                     /estimated_length=171
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2553..>3061
                     /locus_tag="DHV98_01590"
     CDS             <2553..>3061
                     /locus_tag="DHV98_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HCK05082.1"
                     /translation="QAHGIVLQEHKHEEQQGLDTEVMLKKPKQIKAFLDDYVIGQEQT
                     KKVMSVAVYNHYKRLLQPEDDQSIEIQKSNIIIVGQTGTGKTLMAKTIAKMLNVPLAI
                     VDATVLTEAGYVGEDVESILTRLLQAADYDLDKAEKGIVFIDEIDKIARKSDNPSITR
                     DVSGEGVQQA"
BASE COUNT          886 a          492 c          651 g          660 t
ORIGIN      
        1 tggagttcag acgtgtgctc ttccgatcta aagttttgtc aaattataag aaaaatgcca
       61 atattccagg atttagaaag ggtcatatcc cgatgggaat ggtaaaaaaa caattcggaa
      121 aggctgttct tatcgaagag gtaaacaaat tgatccaaga gaaactcaat gaatacctca
      181 aaaaagagga gatcgacatt cttggaaatc cattgcctaa nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nattcttgga aatccattgc ctaaaaatga agcagaaatt gattggactg gagaagattt
      481 tagttttgag tttgaattag gtcttgcccc tgagtttaac gttgatgtaa ccaaaaaggc
      541 gacagtgcat tatcaaatcg aggcagataa agccatgatt gagaatcaaa tcaagaccat
      601 tcgcaaccaa tacggaaagt tgattgccaa agataaagct gaggcgggtg atgagctaac
      661 gggtactttt tcaaatgagg aacaggagat tgaccacaaa gcgacttttg atttagattt
      721 ggtcaaaggc aaaaaacaac gtgaggctct tgtcggggct gttgttggga cggaggttac
      781 tctaaacact aaggatcttt ttaaggagca aaaagaccta gagcgtatgt tagggattgg
      841 tgcagacaaa gccaaggacc ttaaaacaga cgttgtattt accattgccg agatcaacaa
      901 aagagaaaaa gccgagctta atcaagagct gtttgataaa ctttttggtc ctggaaatgt
      961 cagttctgaa aaagaactca aagaaaaaat taaagaggat gcggagcgtc aatttgtaca
     1021 acagagtgat cagaagctct taaatgacgt aatcgatacc ttgattgaca atacaaagtt
     1081 tgatttacca gaagactttt taaaacgttg gatccaaagt acgggcgaag caaaactcac
     1141 tcaggaggaa gctgcggcag agtacgagcg cagcgtaaag ggcttgcgct atcagctgat
     1201 cgagggcaag ttgcgcgaag agcacgaaga attgcagttg aaatttgaag acctcaatgc
     1261 ctatgctaat gagatgatca aaatgcagat gatgcaatac gggcacccaa atccttctga
     1321 cgaagaggtt accggaattg tggcgcgtat tatgagtaat gaggatgagg ttcgtcgcat
     1381 gagtgaacaa ctcaatacga aaaatctttt ggccttcttt aaagccaacg ctaaactaaa
     1441 aactaaaaaa gtaaactacg aggatttcat caagcaggcc tacgcttaat gctggatgaa
     1501 aatacttatc tttaaagcgt tgaacctgaa aatttcaacg ctttttttct cctataaaac
     1561 actagagata tcgcatcatg aactacgcag aagaatttaa aaagtttgcc acaaaagatc
     1621 agggcattag cagtacgtat tacgataaaa ttgtcagcag catgacccca gtagggctga
     1681 cgccaaatat tattgaggag cgacagatga acatcgctat attcgatgtg ttttcgcgat
     1741 tgatgatgga ccgcattatc tttttgggaa ccggaattaa cgatcaaggc gctaatattg
     1801 ttcaggctca attgctcttc ttggaaagtg tggactcgag caaagacatt cagatttaca
     1861 ttaattctcc aggaggaagc gtgtacgcag gtctgggaat ttatgatacc atgcaattca
     1921 tcaagccgga tgttgcgacc atttgtacgg gtatggcggc ctcaatgggt gccgttttgc
     1981 tttgtgcagg agctgcagga aaacgcagtg gactgaccca ctcaagggtt atgatccacc
     2041 agcctatggg cggcgctcaa ggacaagcca gcgatattga aatcacggca aaagagattt
     2101 tgacccttcg tgatgagctc tatgcgatta ttgcgcatca tacgggccaa gaagttgaaa
     2161 aagttcacaa agacagtgat cgtgattatt ggatgaagtc tgataaagcg cttgaatacg
     2221 gaatgattga cgaaatcttg acgcgcgaca aaaccaaata atatgaccaa agaagtcttg
     2281 tcttgttctt tttgtggtcg taaaaaggcc gaaactaatt tgcttatcgc tgggaactct
     2341 gcgcacatct gtgatcagtg tattgagcag gctcatggaa tnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncaggctca tggaatagtg ctgcaagagc
     2581 acaaacacga agagcagcaa gggctcgaca cagaggtgat gctcaaaaag ccgaagcaaa
     2641 tcaaagcgtt tttagatgac tatgtgatcg gacaggaaca gaccaaaaag gtcatgtctg
     2701 tggcggttta taatcactat aagagattgc ttcaacccga agacgatcag tcgattgaaa
     2761 ttcaaaaaag taatatcatc atcgtagggc agaccggtac cggtaaaacc ctaatggcca
     2821 aaaccattgc caaaatgctc aatgtgccct tagcgattgt cgatgcgacg gttttgactg
     2881 aagcgggata cgtgggggaa gatgtcgaga gtattttgac cagactcttg caagcggcgg
     2941 attatgattt agacaaggcc gaaaaaggga tcgtttttat tgacgagatc gataaaattg
     3001 cccgcaagag tgataaccca agcattacgc gtgatgtcag tggggaaggg gtgcaacaag
     3061 c
//
LOCUS       DPUP01000048            5410 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_25430,
            whole genome shotgun sequence.
ACCESSION   DPUP01000048 DPUP01000000
VERSION     DPUP01000048.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5410)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5410)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5410
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..171
                     /locus_tag="DHV98_01595"
     CDS             <1..171
                     /locus_tag="DHV98_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010255801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05083.1"
                     /translation="QSPIDEITLTHQAHTREGFASGALLAAHWVIGKTGIFSMKDVLH
                     LSDIKDDQNKES"
     gene            168..1781
                     /gene="lepB"
                     /locus_tag="DHV98_01600"
     CDS             168..1781
                     /gene="lepB"
                     /locus_tag="DHV98_01600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HCK05084.1"
                     /translation="MTLTQWLIFLGLIHVVHFLGTWKMYKAAGYAPVFALIPIYNAMV
                     LMRIINRPRWWVILLFIPIINLIMLPVIWVETLRSFGFNERSQNAYAILSLGFYLFYI
                     NYTQTLNHKKERSLMPRSSSGEWISSILFAIVAATLVHTYFMQPFTIPSSSLEKTLLV
                     GDYLFVSKFHYGARTPMTSVSLPMVHDTIPVVGTKSYLSTPQLPYFRIPGFQDIKRND
                     IVVFNWPVDTLVDIRPGFMRGSVQKPIDKKSNYVKRCVGLPGDSLSVIDGYVYINGKQ
                     NELPDRAKIQFVYEVVSKKPLIKVERGGRVFNEPNPVIYDRFKISDISFAGMDQSTGL
                     IKQRAHMSEAVASQLEALSDVVSVTKIKNRAGNFDRSVFPYSVDFPNNNDFFGPIYIP
                     EAGSTVSITPKTLPFYRRIIEVYEGRELGITQDIKVSNNEVLLNGNPITEYTFKMDYY
                     WLMGDNRDNSQDARSWGFVPENHVIGKPVFIWLSLDANKKGFSKIRWERMFTAVGGSG
                     EPKSYLSYFLIALAGYYGWDFWRKRKKKK"
     gene            1812..>2032
                     /locus_tag="DHV98_01605"
     CDS             1812..>2032
                     /locus_tag="DHV98_01605"
                     /inference="COORDINATES: protein motif:HMM:PF08889.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05085.1"
                     /translation="MDLFLPTYFPDLLHIAALVRSKNVIFEVRDNYQKQTQRNRTYIA
                     HAQGVLPLIVPIKHRTTGQRLKSYEVESE"
     assembly_gap    2033..2127
                     /estimated_length=95
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2128..>2341
                     /locus_tag="DHV98_01610"
     CDS             <2128..>2341
                     /locus_tag="DHV98_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013997817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05086.1"
                     /translation="YEVESESAFGWATNHWKSIQTAYRTAPFFEFYEDDLADLFSSES
                     ITLQAHNLQIIERLMELIGADFNYTLT"
     assembly_gap    2342..2459
                     /estimated_length=118
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2460..2694
                     /locus_tag="DHV98_01615"
     CDS             <2460..2694
                     /locus_tag="DHV98_01615"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05087.1"
                     /translation="DFKYSLTASYQTNFSGNDWRYFGEKKHNIKVTFPHYIQVFESYN
                     GFIPNCSVLDALFNLGPQTLDYLQNLSLPSKDR"
     gene            complement(2702..2938)
                     /locus_tag="DHV98_01620"
     CDS             complement(2702..2938)
                     /locus_tag="DHV98_01620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05088.1"
                     /translation="MAGDFNNTAFSYAYDQITAQYEDAFQKQGHGLGATYHFNRLPLR
                     IDFIFSDPSIDVLDFETLEESRSDHLPIMARFRR"
     assembly_gap    2964..3044
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3045..3756)
                     /locus_tag="DHV98_01625"
     CDS             complement(<3045..3756)
                     /locus_tag="DHV98_01625"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HCK05089.1"
                     /translation="MTRKFLFGINILVLVLLLLSFFVPLVAPVKFPVFSLLSLLTLPI
                     IGVNAAFAVYWLVRWDPRFFLSATLLILAHIYFGPFVLGGKNNKEVSEKTLDVLSHNV
                     HLFDKYAADLEKGSIAQEYKLLIDRKAPEIICLQEYTGTHPVDFDRYPYQYIYFNPPF
                     KLMGQAIMSQYPMINRGSLNFQNTANNVIYADLLVDGDTIRIYNAHLQSIGINPTEKF
                     VNQGGAEKIKNRISTTFVK"
     gene            complement(3774..4655)
                     /locus_tag="DHV98_01630"
     CDS             complement(3774..4655)
                     /locus_tag="DHV98_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCK05090.1"
                     /translation="MMGPNENLWSQFKRQDVMTKIMVLNGLVFLVLSIGAALMGWSRS
                     SFYSWFALPDDLLRFIGQPWSLLTYSFLHSGFFHLLFNMIWLSFFGRFVLNLFSERRF
                     LTLYLLGGIVAGLVYLISYNIFPAFLGAPSGQLVGASGAVMAIMAFAALYSPYAPVRI
                     FFFTLKLWQLAAFMVLWDLIRLPEMNNAGGLIAHLGGAAFGYYYARNLQAGRDVGLWF
                     DRLMDRLVTLWSDASKKSRSANRRGASRVRNTRPSKSTKGADQEKTDAILDKIGQSGY
                     ESLTKEEKDFLFKSGGN"
     gene            complement(4655..5404)
                     /locus_tag="DHV98_01635"
     CDS             complement(4655..5404)
                     /locus_tag="DHV98_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCK05091.1"
                     /translation="MRQISETIKVLVISNVLFFLGTLVSGEAIYQIFSLYYFDNPQFS
                     YWQPLTHMFMHGGWMHLLFNMYALWAFGAPLEAQWGRNKFLFFYFSAGLGAALIHSLV
                     NWYYVSQGIETLMSMGMSVQEVGDLLNNTLTPGSYRVIPDMGPGMDQQLFTAYNTPAV
                     GASGAIYGILVAFGMLYPHVELMLIFVPFPIKAKYFIPILLALDLFSGLTGSSLFGQN
                     IANWAHLGGALFGFIMAYYWRKNSFNDKRWY"
BASE COUNT         1576 a         1161 c         1039 g         1340 t
ORIGIN      
        1 caaagtccca ttgatgaaat cacgctaaca caccaagccc acacgcggga agggtttgcc
       61 agtggtgcgc tactcgccgc gcattgggtc atcggcaaaa caggaatatt ttcaatgaaa
      121 gatgtcttac atttgtcaga catcaaggac gatcaaaaca aagaatcatg acacttaccc
      181 aatggttaat ttttttaggg ctcatccatg tcgttcattt tttaggcacg tggaaaatgt
      241 acaaagcagc gggctatgcc ccggttttcg ctctgatacc gatatacaac gctatggtat
      301 tgatgcgcat catcaacagg ccacgttggt gggtcatttt actgttcatc ccgatcatca
      361 atctgatcat gctgcccgtg atttgggtag aaaccctccg gagctttggc tttaatgagc
      421 gcagtcaaaa tgcctacgcc atcctttccc ttgggtttta tttgttttat atcaattaca
      481 cccaaacgct aaatcataaa aaagagcgca gtctgatgcc gcgaagttct tcaggtgaat
      541 ggatcagcag tatcctattt gctatagtgg cggccacttt ggtccacacg tattttatgc
      601 agccctttac catcccttcc tcttcccttg aaaaaacact tttagttggg gattatttat
      661 ttgtcagcaa gtttcactac ggagcacgca ccccaatgac gagtgtctcc ttgcccatgg
      721 tgcacgacac catacccgta gtgggcacta aatcatattt gagcacaccc cagctcccct
      781 attttagaat tcccggattt caagacatca aacgcaatga tattgtcgtc tttaattggc
      841 ctgtagacac tttagtcgat atacgccctg ggtttatgcg aggaagcgtt caaaaaccca
      901 tcgataagaa gtctaattac gtcaagcgat gtgtcgggct tcctggcgat tcactttcgg
      961 tgattgatgg ctatgtctat attaacggca aacaaaacga actgcccgat cgcgcaaaaa
     1021 ttcaatttgt ctatgaggtc gtttctaaaa agccactcat taaggtagaa cgcggtggcc
     1081 gcgtctttaa tgagcctaat cctgtgattt atgaccgatt taaaatctcc gacatcagtt
     1141 ttgccgggat ggatcaatct acggggctca ttaaacagag agcccatatg agcgaggcag
     1201 tggccagtca gttagaagct ttgagcgatg tggtgtcggt gaccaagatt aaaaatagag
     1261 ccggcaactt cgaccgttcc gtgtttcctt atagcgtaga ctttccaaac aataatgact
     1321 tttttggtcc tatttatatt ccagaggctg gatctacagt gtccattacc ccaaaaacac
     1381 tcccctttta tcgaagaatt atagaagttt atgaagggcg tgaattagga ataactcaag
     1441 acataaaggt aagcaacaac gaagtcttac ttaacggcaa cccaatcaca gagtacacct
     1501 ttaagatgga ctactactgg cttatgggag acaatcgtga caactcacaa gatgcccgaa
     1561 gctggggatt tgtcccggaa aatcacgtta tcggtaagcc ggtgtttatt tggttgagtt
     1621 tggacgccaa taagaaaggg tttagtaaaa tccgttggga acgcatgttc accgctgttg
     1681 gtggttcggg ggaaccaaaa tcataccttt cttatttttt aattgccttg gcgggctatt
     1741 atggttggga cttttggcgt aaacgcaaga aaaagaaata atcctaaaga gcgctttata
     1801 ctcattttct cttggatctt tttcttccta catatttccc agacctactg catattgcgg
     1861 cccttgtgcg cagtaaaaat gtgatctttg aagtccgtga caattaccaa aagcagaccc
     1921 agcgcaaccg cacctacata gcccatgcac aaggggtgtt acctctgatt gttccgatca
     1981 aacacagaac cactgggcaa cgcctaaaat cgtatgaggt agaaagcgaa atnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnngta tgaggtagaa agcgaaagtg cctttggttg
     2161 ggcgacaaat cattggaaat cgattcaaac cgcataccga acggcccctt tttttgaatt
     2221 ttatgaagat gatcttgctg acttattttc ttcagaatcc attacacttc aagcccacaa
     2281 tttgcaaatt attgaacgat taatggaact catcggtgcg gattttaatt ataccctgac
     2341 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng
     2461 gattttaaat atagcctgac cgcctcctac caaaccaatt tttcaggaaa tgattggcgc
     2521 tattttggcg aaaaaaaaca caatataaag gtaacgttcc cgcactatat ccaagtcttt
     2581 gaaagttaca atgggtttat cccaaattgc tctgttttgg atgcattgtt taatttggga
     2641 ccacaaaccc tggattatct ccaaaatcta tccttacctt caaaggatcg ctaaaccaaa
     2701 tttatcgtct gaaacgggcc attatgggca aatgatctga gcgagattct tctaaggtct
     2761 caaaatccaa aacgtctata ctcgggtccg aaaaaataaa atcaatgcgc agcggcaagc
     2821 gattgaaatg ataggttgcc cctaggccat ggccttgctt ttggaaggcg tcttcgtact
     2881 gagccgtgat ctggtcataa gcatatgaaa aggcagtatt attaaaatct ccagccaaaa
     2941 ttttgggata tttcgcggta gctnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtttga caaatgtggt
     3061 tgaaattctg ttttttattt tctccgcccc gccctgattc acaaatttct ctgtgggatt
     3121 gatgcctatg gattgcagat gtgcattata aattctaatc gtatctccgt ctactaaaag
     3181 atctgcataa atcacattat tggcggtatt ttgaaaattt aaactccccc tatttatcat
     3241 tggatattgc gacataatcg cctgacccat taatttgaat ggtggattaa aataaatgta
     3301 ctgatacggg taccgatcaa aatctacagg gtgggtcccg gtgtactctt gtaaacaaat
     3361 gatctcaggg gcttttcgat caatcaaaag tttatattcc tgagcaatac tccctttctc
     3421 taaatcagcc gcgtatttat caaataaatg aacattgtgt gataaaacgt ccagggtttt
     3481 ttcagaaact tctttattgt ttttgccgcc aaggacgaag gggccaaaat aaatgtgcgc
     3541 taaaatcagt agtgtcgcgg aaagaaaaaa tcttgggtcc cagcgcacta accaatatac
     3601 cgcgaaggcc gcattgacgc caataatcgg caaggtcagc agactaagca aggaaaaaac
     3661 cggaaacttc accggggcga ctaaaggcac aaaaaacgac agtaacagaa ggactaagac
     3721 taaaatattg atgccgaaaa gaaatttgcg tgtcatgaaa acttcagttt ggtctaattg
     3781 cccccggatt taaatagaaa atccttctcc tctttggtaa ggctctcata accactctgc
     3841 ccgatcttgt ccaaaatggc atcagttttt tcttgatcag cgcctttggt ggatttgctc
     3901 ggtcgagtgt ttctcactcg tgaagcccct ctacgattcg ctgaacgact ttttttcgat
     3961 gcatcggacc aaagcgtgac caaacgatcc attaatcgat caaaccaaag cccaacatca
     4021 cgaccggcct gcaaattacg ggcataataa tagccaaaag cagcaccacc caaatgcgca
     4081 atcaaccctc ctgcattgtt catttcaggc agacggatca aatcccacaa aaccataaac
     4141 gcggcaagtt gccaaagttt gagggtaaag aaaaaaatgc gaaccggggc ataaggacta
     4201 tataaagcgg caaaggccat gatcgccatc accgcccctg aggccccaac gagctgtccg
     4261 ctcggcgcac ctaaaaatgc ggggaatatg ttataggaga ttaaataaac caagcccgca
     4321 acgataccgc caagcaaata caaggttaaa aaacgacgct ctgaaaaaag gtttaacaca
     4381 aagcgaccaa aaaaggacaa ccaaatcatg ttaaacaaca aatgaaaaaa tccagagtgt
     4441 aagaaactat aggttaataa actccatggc tgcccaataa agcgaaggag atcatcgggc
     4501 aaggcaaacc aggaataaaa actacttcgc gaccaaccca ttaaagcggc tccaatactc
     4561 aacaccaaaa ataccagccc attgaggacc attattttgg tcatcacatc ttgccgttta
     4621 aattgactcc acaaattctc gtttggtccc ataatcaata ccagcgctta tcgttaaaac
     4681 tattctttct ccaataataa gccatgataa agccaaatag cgcccctcct agatgagccc
     4741 aattcgcgat attttgtccg aataaagacg agcccgtaag accggaaaac aaatcaaggg
     4801 ctaacaatat gggaataaag tacttggcct tgatcggaaa tggcacaaaa attaacatca
     4861 attctacatg agggtagagc atgccaaagg caacgagaat accataaatc gcaccggatg
     4921 cccctacagc cggtgtattg taggctgtaa aaagttgttg atccattcct ggtcccatat
     4981 caggaatgac ccgataggaa ccgggcgtta aggtattgtt gagtaaatct cccacctctt
     5041 gaacgctcat gcccatggac atcagggttt ctatgccctg tgatacataa taccaattga
     5101 ccaatgaatg aatcagtgct gccccgagtc ctgcagaaaa ataaaaaaat aaaaatttgt
     5161 tacgccccca ttgcgcttca agtggcgccc caaaggccca aagggcatac atgttaaaaa
     5221 gcaaatgcat ccaaccgcca tgcatgaaca tatgggtcaa aggctgccag taagaaaact
     5281 gaggattgtc aaaataatag agcgaaaaaa tttgataaat ggcctcgcca gacaccagtg
     5341 ttccaagaaa aaacagcaca ttactgatga ctaaaacctt tatcgtttct gaaatttgtc
     5401 gcattagtta
//
LOCUS       DPUP01000049            2744 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_27921,
            whole genome shotgun sequence.
ACCESSION   DPUP01000049 DPUP01000000
VERSION     DPUP01000049.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1023)
                     /locus_tag="DHV98_01640"
     CDS             complement(<1..1023)
                     /locus_tag="DHV98_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018986525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain alpha-keto acid dehydrogenase
                     subunit E2"
                     /protein_id="HCK05092.1"
                     /translation="MATEEILIPDIGNFDSVDIIEVLISVGDTIALDDPLMTVESDKA
                     SMDIPAPKAGVIKEIKIKVGDKVKQGSLVALIESVATPAAEKEKVKPEEKSPAVTNKG
                     IEKNIAAPSRPAPEPPAKIQPVNTPIPIGESALVDDGKISHASPSIRKFARDLGVNLA
                     FVKGTGPKNRVLIEDVQAYVKKELAKPRTENMGAQFAPIPMPNIDFTQFGKVETQALS
                     KIKKISGANLHRNWVTAPHVTQFDSADITDLEVFRKSMQKDAEKRGTKLTLLAFLIKA
                     CVNALKTYPVFNSSLSPDGESLVLKSYYNIGFACDTPDGLVVPVVKDAHKKDVLEIAM
                     DLGDLSA"
     gene            complement(1032..>2744)
                     /gene="aceE"
                     /locus_tag="DHV98_01645"
     CDS             complement(1032..>2744)
                     /gene="aceE"
                     /locus_tag="DHV98_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018986526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HCK05093.1"
                     /translation="CVDGEYQNFKAKGGAYTRENFFGKYPELREMVAAMSDADIWRLN
                     RGGHDPHKVFAAYAAASSHKGQPSIVLAKTVKGYGMGDAGEGHNISHQQKSMDIESLK
                     AFRSRFDLPISDEDVEKLSFYKPAPDSPEIQYMMERRQALGGFLPARRRKGNELKVPE
                     LSAFATQLVSSGEREVSTTMAFVRILNTLVRDKEIGKYIVPIVPDEARTFGMEGMFRQ
                     LGIYSSVGQLYEPQDSDQVMFYKEQKDGQILEEGINEAGSFSSWIAAATSYSNTGIQT
                     IPFYIFYSMFGFQRIGDLAWAAGDSRARGFLLGATAGRTTLNGEGLQHEDGHSHLMSA
                     TIPNCVSYDPCFAYELAVIIQNGLERMVQNQEDVYYYITVMNENYQHPDMPKGVEKGI
                     IQGIYPFLTSVTKEPKVQLMGSGVILREVIEASKLLEKDFGVSADVFSVTSFTELRRE
                     AQTVERWNMLNPDKPQKQSIVQQVVADQDSPVIASTDYMKSFPEQIANFLPNKFVALG
                     TDGYGRSDSREALRSFFEVDRYYIVIAALKALVDTKKIEVSTLTKAIKQYNIDGNKPN
                     PVSH"
BASE COUNT          657 a          660 c          613 g          814 t
ORIGIN      
        1 ggctgataaa tcacccaggt ccattgcaat ttccaacacg tctttcttgt gagcgtcctt
       61 tactaccggg acaactaatc cgtcgggggt gtcgcaggca aacccaatat tgtaataact
      121 tttgaggacc aagctttcac cgtcgggtga taaggagctg ttaaatactg gataggtttt
      181 taatgcattg acgcaggcct taattaaaaa agcgagcaag gtcaactttg tgcctctctt
      241 ttccgcgtct ttttgcattg attttctaaa gacctctaag tcggtaatgt cagcgctatc
      301 aaactgtgtg acatgcggag cggtgaccca attacgatga aggttggccc cagagatttt
      361 tttaatcttc gacagggctt gagtctcaac ctttccaaac tgggtaaagt cgatattggg
      421 cattggtatc ggagcgaatt gtgcccccat attttcagtg cgcggcttgg ctaattcttt
      481 tttaacgtaa gcttggacgt cctcaattaa aactctattt ttaggccctg tgcctttaac
      541 aaaagccaag ttaacgccca ggtcccttgc aaattttcta atcgaagggc tggcgtggct
      601 tatttttcca tcatcgacca aggcgctttc accgatcgga attggggtgt ttacgggttg
      661 tattttagct ggcggttcag gggccggtcg agagggggcg gcgatatttt tttcaatgcc
      721 cttgttggtg acggcaggac ttttctcttc gggctttacc ttttcttttt cagcagcggg
      781 tgtagccaca ctttctataa gggcaacgag actcccttgt ttgaccttgt cccccacctt
      841 gatttttatt tccttgataa cccctgcctt gggtgccgga atatccatcg aggccttgtc
      901 tgactccaca gtcataagcg ggtcatccaa cgcaatagtg tcaccaacac taatcaagac
      961 ttcaatgata tcaacactat caaagttacc aatgtcggga atgaggattt cttcggttgc
     1021 catagggacc cttagtgact cacaggattt ggtttattgc cgtcaatgtt atattgcttg
     1081 atagctttag tgagcgtgct cacctcaatt tttttggtgt caaccagcgc cttaagcgcg
     1141 gcaattacta tgtaataacg gtccacctca aagaagcttc tgagggcttc ccgactgtct
     1201 gatcttccgt acccgtctgt tccaagcgct acaaatttat tgggtaagaa gttcgcaatt
     1261 tgttctggga atgacttcat gtaatcggtt gaagcgataa cagggctgtc ctgatcggcg
     1321 accacctgct gaacaattga ttgtttttga ggtttgtcag ggtttagcat gttccatcgc
     1381 tcaaccgttt gagcctctct tcttaactca gtaaagctcg ttacgctgaa aacgtcagcg
     1441 ctcaccccaa aatctttttc aagcagcttg ctggcttcga taacctcacg caagataacg
     1501 ccacttccca tcaattgcac tttaggctct tttgttactg aggtcaggaa ggggtagatg
     1561 ccttgaataa ttcctttttc aacgcctttt ggcatgtcgg ggtgttggta gttttcattc
     1621 atgacggtga tgtagtagta gacgtcttcc tgattttgca ccatacgctc taaaccattt
     1681 tgaataataa cggctagctc atatgcaaaa caagggtcat aagatacaca gttagggata
     1741 gtcgccgaca ttagatggct gtggccatcc tcgtgttgca acccctcgcc gttaagtgtc
     1801 gttcgtccag ctgtggcccc taataagaaa cctctcgcac gagagtcacc tgcagcccac
     1861 gctaagtcgc caatgcgctg aaaaccaaac atcgaataaa aaatataaaa tggaatcgtt
     1921 tgtattccgg tgttgctgta tgaggtggct gccgcaatcc aggaggagaa ggaccctgct
     1981 tcattaattc cttcctctaa aatttgccca tccttttgtt ctttgtagaa cattacttga
     2041 tcggaatcct gaggttcgta aagttgacct acggatgagt aaatacctaa ctgcctaaac
     2101 ataccttcca tgccaaaagt tctggcctcg tcggggacga tgggcacaat atattttcca
     2161 atttccttat cgcgaaccag ggtgttaagt attctcacaa atgccatggt tgtcgacacc
     2221 tctcgctctc cagaggagac taattgagtt gcaaatgcag agagttcggg cacctttaat
     2281 tcattgccct ttcttcggcg agcgggtaag aagccaccta gcgcctgcct tctttccatc
     2341 atgtattgaa tctcagggga gtccggggct ggcttgtaga aagataattt ctcgacgtct
     2401 tcgtcactaa tcggaagatc aaaccttgac ctaaaggctt ttagagactc gatgtccatg
     2461 ctcttttgct ggtgactgat attatgaccc tcacccgcgt cgcccattcc gtaaccttta
     2521 acggtcttag ctaggacgat tgagggctgg cctttatgtg aggatgccgc agcataagca
     2581 gcaaagacct tatgcggatc atgaccaccc cgatttagac gccagatgtc tgcgtcagac
     2641 attgctgcca ccatttctct tagctctgga tatttcccaa aaaagttctc acgagtatat
     2701 gcaccgcctt tagctttaaa gttttggtac tcaccgtcca caca
//
LOCUS       DPUP01000050            5379 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1882,
            whole genome shotgun sequence.
ACCESSION   DPUP01000050 DPUP01000000
VERSION     DPUP01000050.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5379)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5379)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5379
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1518)
                     /locus_tag="DHV98_01650"
     CDS             complement(<1..>1518)
                     /locus_tag="DHV98_01650"
                     /inference="COORDINATES: protein
                     motif:HMM:PF01119.17,HMM:PF08676.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutL"
                     /protein_id="HCK05094.1"
                     /translation="QAAAEGIECIIEGSEVVAQSPCVMQPGTVVSVKNLFYNIPARRN
                     FLKGDHVELKHCIEEFQRVALAHPQIGFKMIHQDNDLFHFTPANVRQRIAAVLGGKAN
                     ERLVPVEENTEIVDISGFVLKPEFAKKSRGDQYFFVNDRFIRSAYLNHAISAAFEGMI
                     RPGLHPGYVLFLKVDPAAIDINIHPTKTEVKFEEEQSIYAVLRACVKHSLGQFNIMPL
                     LDFERDSSMDPHYSLQGQTPKVPQIEVDADFNPFASGGYRPKQDLGSWSSLYVGLQAE
                     EPGHSLEVESQEVTGTLFEEDAQESDQITVQIQNKFIVTTIKQGLIVVHQNFAHQRII
                     YERLLRTATLQEPASQQKLFAQHVELNALQALCAEQLEEALLSIGFDFELEQNTLALK
                     AIPAGLSEDQAEKVVLAVLDDQMNDRPNEGFSSLDILARSLAAKMAIKSGQKLTVPEQ
                     RDLINELFACKEPDRLRRRCRTFIDRKSFSSGRCIADNAGRFCCANFIGLGRFRK"
     assembly_gap    1519..1584
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1585..1952)
                     /locus_tag="DHV98_01655"
     CDS             complement(<1585..1952)
                     /locus_tag="DHV98_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutL"
                     /protein_id="HCK05095.1"
                     /translation="MSLPKDIKLLPEHVANQIAAGEVVQRPASVVKELMENAVDAGAT
                     QITLFLKGAGKTLIQVIDNGSGMTPENVSLCFARHATSKISTAEDLFALSTKGFRGEA
                     MASIAAIAHVTLKTKTQAAA"
     gene            complement(1949..2242)
                     /locus_tag="DHV98_01660"
     CDS             complement(1949..2242)
                     /locus_tag="DHV98_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05096.1"
                     /translation="MIKFTLIKRLKTNNRFNYTPRYYRGKPKVDASHSGTKIDHYVDT
                     LNQNDYSGQWHAARNKYRNRENSSWNATVWVLIAFFTLVFLWIIDFDLSIFAH"
     gene            complement(2414..2905)
                     /locus_tag="DHV98_01665"
     CDS             complement(2414..2905)
                     /locus_tag="DHV98_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013619842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HCK05097.1"
                     /translation="MATAQKNLSEFDPDQLPDATGLSIGVVVAQWNSEITHALAQGAI
                     ETLKRCGLQEDHILQWDVPGSFELIYGCQKMMSNHQELDAIIAIGSVVEGETKHFDFV
                     CSGVTQGIKDLNLLGIMPVIFCVLTDHNMEQARARSGGKHGNKGVEAAVAAIQMAVLG
                     SKK"
     gene            complement(2909..3676)
                     /locus_tag="DHV98_01670"
     CDS             complement(2909..3676)
                     /locus_tag="DHV98_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05098.1"
                     /translation="MATYKKRGYKPKTSVEKEVELEAGSTTAEVFSSLDEGASRTEAW
                     VEKNQKSIFTLVAVIAVGVLGYIAYQKFIFEPKQVEAANEVYQASSYFEQALTAEEQK
                     DSLYLMALNGNAGRYGLLDIADKFDGTPAGDLARYQAGIAYFNLSQYDKAIAFLDGFS
                     SGDAMMTPVAKGVIGDSFAQLEQYDEALSYYLQAADLSNNALTTPRYLLKAGTTALRL
                     GQNGLALKAFTRILDEFEDATEATQAKAYKAQAEAAQ"
     gene            3809..4948
                     /locus_tag="DHV98_01675"
                     /pseudo
     CDS             3809..4948
                     /locus_tag="DHV98_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012022322.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
     assembly_gap    3906..3956
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4974..5270
                     /locus_tag="DHV98_01680"
     CDS             4974..5270
                     /locus_tag="DHV98_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HCK05099.1"
                     /translation="MPKRNTESQPISSVLQEFLSGSKLEKGLNKVTVEATWHQVMGPP
                     ITKYTKTLRWAPPVLHVYLSSSVLREELHYGKDKIIALMNQELGESLVESIIFK"
BASE COUNT         1477 a         1216 c         1089 g         1480 t
ORIGIN      
        1 cttttcggaa tcttcccaag ccaataaaat ttgcgcagca gaacctgcct gcattgtcag
       61 cgatgcaccg accggaactg aagctcttcc gatctataaa cgttcggcaa cggcgacgca
      121 gacgatcggg ctccttgcac gcaaaaagtt cattgattaa atcacgctgc tctggtaccg
      181 tcaatttttg cccagatttt atcgccattt tggccgccaa agaacgtgcc aaaatatcca
      241 atgaactaaa accttcattg ggacgatcat tcatttgatc atcgagcacg gctaggacta
      301 ctttttcggc ctgatcttca gaaagacccg caggtatggc ctttaaagcc agtgtatttt
      361 gttccaattc aaaatcaaac ccaatactca aaagggcctc ctctaattgc tcagcgcaca
      421 aggcctgcag cgcatttaat tcgacatgtt gcgcgaataa tttttgctga gaagccggtt
      481 cttgaagggt tgcggtacgt aaaaggcgtt cgtatattat gcgctgatga gcgaaatttt
      541 gatggaccac tataagtcct tgctttattg tcgtcacaat aaatttattt tgaatctgta
      601 ccgtaatctg atctgattct tgagcgtcct cttcaaaaag cgttccggtc acctcttgac
      661 tttcaacctc cagactatgc cctggttctt ctgcttgaag tccgacatag agtgaggacc
      721 aagagcctaa atcttgtttt ggacgataac ccccactggc aaagggatta aaatctgcat
      781 caacctcaat ttgtggaact tttggtgtct gaccttgtaa agaatagtgc gggtccatac
      841 tcgaatcacg ttcaaagtcc aataaaggca ttatattgaa ttgccctaaa ctgtgtttga
      901 cacaggctct taaaacggca taaatcgatt gttcctcttc aaacttcacc tcagttttag
      961 tcggatgtat attgatatca atcgccgcag gatctacttt gagaaataaa acatatcctg
     1021 gatgcagtcc aggccgaatc atcccctcaa aagcagcgct tatcgcgtga ttcaaatagg
     1081 cacttctgat aaagcgatcg ttaacaaaga agtattggtc cccccgcgac tttttggcaa
     1141 attcaggttt gagcacaaag cccgaaatat caacaatctc cgtgttttct tcaactggga
     1201 ctaaacgttc attggctttt ccgcccaaaa cggccgcaat gcgctgtcgg acattcgccg
     1261 gggtaaaatg aaataaatca ttgtcctgat gaatcatttt aaagccgatt tgagggtgtg
     1321 ccaatgcgac gcgttgaaac tcttcgatac aatgttttaa ttccacatgg tcccctttga
     1381 gaaaattccg ccttgcagga atattgtaaa ataaattttt gacactaacc acagtcccgg
     1441 gttgcatcac gcagggactc tgagccacaa cctcactgcc ctcgataatg cattcaatcc
     1501 cttcagcggc cgcttgagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnntcagcg gccgcttgag tttttgtttt taaagtcaca
     1621 tgagcaatag cagcaattga agccatcgct tccccgcgaa atccttttgt gctgagggca
     1681 aataaatcct ctgccgtaga aatttttgag gtcgcatgtc gtgcaaaaca caaagacaca
     1741 ttttcggggg tcatgcctga gccattatcg atgacctgaa ttagggtttt acctgcgccc
     1801 ttcaaaaaca aggttatttg ggtcgctcca gcatcaacgg cattctccat taattctttg
     1861 accaccgaag ccggacgttg taccacctcg ccagcagcaa tttggttggc gacgtgctct
     1921 ggcaatagtt ttatgtcttt tggaaggctc aatgggcaaa aattgataaa tcaaagtcta
     1981 taatccataa aaacaccaaa gtaaaaaagg caataagtac ccatacagtg gcattccatg
     2041 aggaattttc ccgattacgg tatttgttgc gcgcggcatg ccattgaccg gaatagtcat
     2101 tttggtttag cgtatccaca tagtgatcaa ttttcgtccc actatgactg gcatcgacct
     2161 tgggtttccc gcgataatat cgcggggtgt agttaaaacg attattcgtt ttaaggcgct
     2221 ttattaaggt aaatttaatc ataatcctat cctcaaaaat aaggatttaa acagagttat
     2281 caggcctgta tttgggggat tttttaaaag ccataaatag ccataagacc ataatgcttt
     2341 gaggcaaaaa tgtttggatt gagccgtcgc gcttgagtga agcgctgggt gctacgaaga
     2401 aaagaattga gccctacttt tttgagccca aaactgccat ttggatggcc gcgacagcag
     2461 cctctacccc tttattacca tgcttgccgc cgcttcgggc acgcgcttgt tccatattat
     2521 gatcggtcaa aacacagaag atcaccggca taataccgag caggtttaaa tctttaatcc
     2581 cttgggtcac cccggaacaa acaaagtcaa aatgcttggt ttctccctct actacagagc
     2641 ctatggcaat aatcgcgtct aattcctgat gattactcat cattttctga cacccataga
     2701 tgagttcaaa actcccgggc acgtcccatt gcagtatgtg gtcctcctga aggccgcagc
     2761 gctttagggt ttctatggcc ccttgagcca gcgcatgagt gatctcggaa ttccactggg
     2821 caacaactac accaatgctc agaccggtcg catcaggcaa ttggtctggg tcaaattcag
     2881 agaggttttt ttgcgccgta gccatgattt attgggctgc ctcagcttga gctttgtagg
     2941 ccttggcttg ggttgcttct gtagcgtcct caaactcatc taaaatacgc gtaaaggctt
     3001 ttaatgctaa accattttga cctaaacgaa gcgccgttgt tcctgctttg agtaaatagc
     3061 gcggtgtggt caaggcatta ttgcttaaat cagcggcttg aaggtaataa ctcaaggcct
     3121 catcgtattg ttctaactga gcgaaagaat caccaataac tcctttggct accggggtca
     3181 tcatggcatc accactactg aacccatcga gaaacgcgat cgccttatcg tattggctaa
     3241 ggttaaagta ggcgattccc gcttgatagc gcgccaaatc acccgctggg gttccgtcaa
     3301 atttatcggc aatatccaaa agaccatagc gtcctgcatt tccgttaagg gccatgaggt
     3361 aaagtgaatc cttttgctct tcagcagtca atgcttgttc aaagtaagaa ctcgcttgat
     3421 agacttcatt agcggcttct acttgttttg gctcaaaaat aaatttctga taggcgatat
     3481 agccgagcac gccaacagcg atcaccgcta cgagggtaaa gattgacttt tgattctttt
     3541 ctacccatgc ttctgtgcgt gaagcccctt catcaaggct gctaaatacc tcagcagtag
     3601 tacttcctgc ttccagttct acctcttttt caacactcgt tttgggcttg tatccgcgtt
     3661 tcttataagt cgccatagtt gcttaatttg aggggcaaaa atatgatttt tattataatt
     3721 ttaaagtgaa aaatcaataa tttgcggtga tttagcgcgg ctttacgaat gcgcctaatt
     3781 ccttagaact cagtccaaat tcatttttgt gtttttatcc acgctcgctt tagtcaatta
     3841 caaaaacttt gaggcccgtt cctttgaatt tgacgccaaa ataaattgtt ttgtcggccc
     3901 taatgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnngccc
     3961 taatggcgtt ggaaaaacca atgtccttga tgccgtttat caattgtcct ttggcaagag
     4021 ttatttcaat cctgtcgcct tgcaaaacat aaaacacggc gaagattttt tggtcattga
     4081 tgggacctac caaaaaaaca atcaagaaga gcacgtcgtg ttgggggtta aaaagggcca
     4141 aaagaaaacc attaagcgca acggaaaacc ctacgacaaa atcagtgatc acatcgggtt
     4201 tattcctttg gttattattt cgccgagtga ccgtgatcta attattgaag gaagtgaaac
     4261 gcgcagaaag tttgtggacg gggttattgc gcaaggggac cccgaatatt tacgtcaatt
     4321 actcgactac caaaaaacac tcggccagcg taatgctttg ctcaaatact tccaactcaa
     4381 tcacacgttt gacgcggaaa cactctcgat atacaacgca caactcgatg gcctggggca
     4441 ggctattcac aaaaaaagac aagcctttat cgaggcgttt cttcccatat ttacccagcg
     4501 ctaccggttt atcagcaatg caaaagaaac agtccatttg acttatcaaa gccaactgca
     4561 cgaacataaa ttaatcgatt tactcaccga taatttaggg cgagatcgag cgacccaata
     4621 caccaattac ggcatccaca aagacgattt aaactttgaa attgggtcct atcccatcaa
     4681 gaaatttggc tcacaagggc agcaaaagtc ttttctcatt gccctgaaat tagcgcaatt
     4741 cgatttttta aaggaattga gtaaaactac ccctatattg ctgttggatg atatttttga
     4801 caagcttgac gaaacgcgtg ttgcgcaaat catgggtctg gtcgatcaag aatcctttgg
     4861 acaaatattt ataagcgaca cccacagtga gcgcacagaa aacgttgtga agtcggttca
     4921 tcagagttat aaaattttta acttatagtc ctgcttggat caaaattcaa atcatgccaa
     4981 aacgcaatac agaatcacag cctatttcgt cagtactgca ggagtttttg tctgggtcaa
     5041 agctcgaaaa gggcttgaac aaagtgactg tcgaagccac gtggcatcaa gtgatggggc
     5101 cacccattac caaatacacc aaaactttgc gctgggcgcc accggtgctc catgtttatt
     5161 taagctcctc tgtgttgcgc gaggaattgc attatggcaa agacaaaatt attgctttaa
     5221 tgaatcagga actgggggaa tcactcgtgg aatctataat ttttaaataa aaaagtcggc
     5281 gctatggcgc cgactttttt acctcaaacc aaggctaaac tcgaaaattg agccagggta
     5341 gcatttattt ttttcttaga aaatctctct tccagcaaa
//
LOCUS       DPUP01000051            2623 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_18576,
            whole genome shotgun sequence.
ACCESSION   DPUP01000051 DPUP01000000
VERSION     DPUP01000051.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1292)
                     /locus_tag="DHV98_01685"
     CDS             complement(<1..1292)
                     /locus_tag="DHV98_01685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05100.1"
                     /translation="MKFRLLFLGILCGVLMPNAWGQDCPALLSPVEGATNVPVESSIS
                     WEPVVGVTGYIISIGTSPGDTDIVSEQQVGNDTIFTPPQGLPELTTVYVTLTLFFFNQ
                     DNIVCPSQAFTTEIISTPPGCTELWSPAQGATNVNVGTSISWDYAPKATGYRLSLGTT
                     QGGGELLDNADLGNVFSYNPAVDLPFDTTIYAWVVPYNNVGTNAQCSGSSFTTAGQGT
                     PPDCSSLIYPPNGAVNVGLSPYLQWESVPGALGYRLYIGSSPFNPDVLNGGVFTDNAT
                     YVLNFESNNTYYVTIVPFNEAGDALGCFQESFSTILGCGPFYDPDTGELTSLYPDIDF
                     PEQIGICNNEVPFRVEVTQPADGFRWYRAQGSDELLVSQESSLDLYQEGNYRLEAFNT
                     ITHDGESISCTYVQEFSVRFSGLATVENTRISQQGLSFT"
     gene            1416..>2623
                     /locus_tag="DHV98_01690"
     CDS             1416..>2623
                     /locus_tag="DHV98_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HCK05101.1"
                     /translation="MKDLSFKHIGSLAVPAIISGITEPILSATDAAVVGNIPVNATEA
                     LAAVGVVGALLSTLIWVLAQTRSAIATIVAQNLGAGKIKSLKGFPGQAIVFNVCLGIV
                     VLLITSVFVKEIFGLLNASGLVLEYSMNYYNIRVWGFPFTLFVFAVFGVFRGLQNTFY
                     PMIVAGSGALINIVLDFVFVFGLGPIPAMGIEGAAWASLIAQILMALAVLWLYILKTP
                     LNLNLGKQLHFEIRRLLNMTGHLILRSLALNAVLILAVREANAISPEAMAAHTIAINI
                     WLFSAFFIDGFGAAGNLIGGKLLGAKRYFDLWVLTKKVNGYNLIIAGLLMLIGGLTYV
                     PLGRVFAQDPEVLPQFYGVFFLLILIQPFNALAFTLDAIFKGLGEMAFLRNSLFIAAI
                     FGFGPWILAT"
BASE COUNT          644 a          658 c          620 g          701 t
ORIGIN      
        1 gtaaagctca agccttgctg agaaattctt gtgttttcta cggtagcaag ccctgaaaat
       61 cgcaccgaaa attcctgaac ataagtacaa gaaatacttt ctccgtcatg ggtaatggtg
      121 ttaaacgcct caaggcgata attcccctct tgatatagat ccaggctact ttcttgtgag
      181 accaaaagtt cgtcggatcc ttgtgcgcga taccatctaa acccatcggc aggctgcgtc
      241 acctcaaccc gaaaagggac ctcattattg caaatcccta tttgctcagg aaaatcaatg
      301 tctgggtaga gcgacgttaa ttcacccgta tctggatcgt aaaaaggccc acaacccaaa
      361 atcgtcgaaa aggactcctg aaagcaaccc agcgcgtcac cagcctcatt gaacggaaca
      421 atagtcacat aataagtgtt gttggactca aaatttaaga cataggtggc gttgtcggtg
      481 aacactccgc cattgagtac atcagggtta aagggagagc tcccgatata cagacgataa
      541 cccaaagccc ccggcacaga ttcccactgc agataaggcg aaagccccac attgaccgcg
      601 ccattgggcg gataaatcaa actactgcaa tccggcggtg tgccctggcc cgcagtggtg
      661 aagctcgatc ccgagcattg cgcatttgtc ccaacattat tgtaaggcac gacccaggca
      721 taaatcgtcg tgtcaaaagg caagtcgact gcggggttat aactaaagac attgccgaga
      781 tctgcattat ccaagagctc accgccaccc tgggtcgtgc ctaaactcaa gcgatagccc
      841 gtggctttag gcgcgtaatc ccatgagata gaagtcccca cattgacatt ggtggcgcct
      901 tgagccggcg accaaagttc ggtacacccc ggaggggtcg aaattatttc tgtggtgaag
      961 gcttgactcg ggcaaacgat attatcctga ttgaaaaaaa acagagtcaa ggttacgtaa
     1021 actgtcgtga gctcaggtaa accttgaggc ggggtaaaaa tcgtgtcgtt ccccacttgt
     1081 tgctcgctga caatatcggt gtctccagga ctggtcccaa tcgagataat ataacccgtc
     1141 accccgacta ccggctccca gctaatactc gattctacag gcacattggt ggccccctca
     1201 accggactca aaagcgcagg acagtcctgg ccccaggcat tgggcatcag gacgccacat
     1261 agtatcccca aaaagagcaa tctaaatttc atagcattga gttgtcgcgc atcagcacaa
     1321 acagaatctt gtgtctaaag atacatcttt ccgcaaagcc cataggtcaa gggttgtttg
     1381 tccaaacaat tgttagcgta cctttgtgct caaccatgaa agacctttcg ttcaaacata
     1441 taggatccct cgccgttcct gccattatct cagggattac cgaacccatt ctttcggcta
     1501 cagatgcagc ggtggtaggc aatattcctg taaatgccac agaggcatta gccgcggttg
     1561 gggtcgtcgg ggccctactc tcgaccttaa tttgggtttt ggcgcaaacc cgcagtgcga
     1621 ttgctacgat cgtggcccaa aatctcggcg ctggaaaaat caagtcgctc aagggttttc
     1681 ctggacaggc gatcgtcttc aatgtgtgcc tcggcattgt cgtactgctg atcacctcgg
     1741 tctttgttaa agaaattttt gggttgctga acgcgagtgg ccttgttcta gaatacagca
     1801 tgaactacta caatatccgc gtttgggggt tcccttttac cttgtttgtc tttgccgttt
     1861 ttggagtgtt tcgggggctt caaaacacct tttatcctat gatcgtggcg ggttccggtg
     1921 cgctgatcaa tattgttttg gactttgttt ttgtcttcgg actcggtccc attcctgcca
     1981 tgggcatcga aggggctgct tgggccagcc tgatcgcaca aatattgatg gccttggcgg
     2041 tgctttggct ctatattttg aaaacaccgc ttaatctcaa tcttggcaag cagctgcact
     2101 ttgaaattcg acgactgctg aacatgacag ggcacttaat tttacgctct ttagccctta
     2161 atgcggtact gattttggcc gtgcgcgaag ccaatgcgat tagccctgag gctatggcgg
     2221 cacatacaat cgcgattaat atatggctct tttcagcctt ttttatcgat ggatttggtg
     2281 cggcaggcaa tttaattggg gggaaattac tgggtgccaa aaggtatttc gacctatggg
     2341 tgcttaccaa aaaagtcaat ggatacaacc ttattatcgc cggcttgctc atgctcatcg
     2401 gggggctcac ttatgtgcct ttaggccgtg tttttgccca agacccggag gtcttacccc
     2461 agttttatgg ggtcttcttt cttttgatct taatccaacc gtttaatgcc cttgccttta
     2521 cgttagatgc tattttcaaa ggcctaggag aaatggcctt tttgcgcaat tccctgttta
     2581 tcgccgctat ttttggtttt ggcccctgga ttttggccac cca
//
LOCUS       DPUP01000052            3706 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_25535,
            whole genome shotgun sequence.
ACCESSION   DPUP01000052 DPUP01000000
VERSION     DPUP01000052.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3706)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3706)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3706
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>1419
                     /locus_tag="DHV98_01695"
     CDS             <1..>1419
                     /locus_tag="DHV98_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HCK05102.1"
                     /translation="ISASDDLGAFYAAQSLRQLMPEYLEQNNTAYQPFYLPTGLIKDH
                     PKFAYRGMHLDVGRHFFGPDQVKQYIDYLALLKMNYFHWHLTEDQGWRIEIKSFPKLT
                     QHGSLRKETLVGHYSDEPHQFDATPYGGYYTQEEIKEVVAYAAKRHITIIPEIEMPGH
                     AQAAISAYPELGCTMGAVEVATKWGVFEDIYCAKEETFTFLEAVLEEVIDLFPGPYIH
                     IGGDEAPKAHWAACPSCQGVIRAKGLADEHELQSYFITRMEAFINSKGKQIIGWDEIL
                     EGGLAPNATVMSWRGTQGGVEAAKQQHNVIMTPTSHCYFDYYQSDLPEEPLAIGGYLP
                     LKKVYSYNPVPHELSPEQAQYILGAQGNVWTEYMPTFEQVQYMVFPRILALSEVVWHG
                     PAKSLDREYAGFTRRVGSFFARLDAMGVNYANHLYDIASVHRVEFSSSPKNQNGTNGQ
                     ISDNDDKINSPERNAAQASEQSA"
     assembly_gap    1420..1588
                     /estimated_length=169
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1589..>2187
                     /locus_tag="DHV98_01700"
     CDS             <1589..>2187
                     /locus_tag="DHV98_01700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05103.1"
                     /translation="EQSAVQATISYALINPLPDLNMEYRLNQGPWTAYTGPINITENT
                     GLQARLLRDGQTVGRLMRDSLMLHAGLGSVSRVVPEPHSSYNAGGITALTNGKRGDDK
                     RYGDSEWLGFLGKDISIKLDLKQGAEAQGLNLRFYHSPGQWIYAPKSIRLELVYSDGQ
                     QKTITLPVDTPAENGPHAQSWALPNAPGTAIKSCALKVT"
     assembly_gap    2188..2260
                     /estimated_length=73
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2355..2894
                     /locus_tag="DHV98_01705"
                     /pseudo
     CDS             2355..2894
                     /locus_tag="DHV98_01705"
                     /inference="COORDINATES: protein motif:HMM:PF03932.12"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
     assembly_gap    2895..3079
                     /estimated_length=185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3160..3660)
                     /locus_tag="DHV98_01710"
     CDS             complement(3160..3660)
                     /locus_tag="DHV98_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002665596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate cyclase"
                     /protein_id="HCK05104.1"
                     /translation="MGLSLEIERKFLVLSDAFITRASSRVEMRQGYLNTDPGRVVRVR
                     LSRDLDSDRRQAWITIKGKSLDKGLSRVEWEQSIDYQEGDALMGLCLPYPIEKTRYLV
                     PFEGCIFEVDVFHGQNQGLILAEVELPEVTAQFQRPDWLGAEVTSEGKYTNASLVEKP
                     FSTWVK"
BASE COUNT          882 a          835 c          779 g          783 t
ORIGIN      
        1 catcagtgct tctgatgacc tgggggcgtt ttatgccgct caatccctgc gccaactcat
       61 gccggaatac ttagagcaaa acaatacagc ataccaacca ttttatttgc ccacaggact
      121 gataaaagac caccctaagt ttgcctatcg agggatgcat ttggatgtgg ggcgccactt
      181 ttttggtccc gatcaggtca agcaatacat cgattatttg gccctcttga aaatgaatta
      241 ttttcattgg cacctgaccg aagatcaggg ctggcgtatt gaaattaaat cctttccaaa
      301 actaacccag cacgggagtc tgcgcaaaga aactctagtg ggccactact ccgatgagcc
      361 tcatcaattt gacgccaccc cttatggtgg atattacact caagaagaga ttaaagaagt
      421 ggtggcctat gccgcaaaac gacacattac cattattcca gaaatagaaa tgcccgggca
      481 tgcccaagcc gccatttctg cctatccgga gttgggctgc accatggggg ccgttgaagt
      541 cgccacaaaa tggggcgttt ttgaagacat ttattgcgca aaggaagaaa cctttacctt
      601 tttggaagcc gtattagaag aggttattga cttatttccc ggaccttata tccatatcgg
      661 gggtgacgaa gccccaaaag ctcattgggc cgcctgccct tcatgtcaag gggtgatcag
      721 ggcaaaaggt cttgcggatg aacacgaatt acagagttat tttattaccc gtatggaggc
      781 ctttatcaac agtaagggca aacaaattat cgggtgggac gaaatcctgg aaggtggcct
      841 agcgccaaac gctaccgtca tgtcttggcg cgggacgcaa gggggtgttg aagcggctaa
      901 gcaacagcac aatgttataa tgacgcccac ttcgcactgt tattttgatt actaccaaag
      961 cgatttgccc gaggagcctc tggccattgg cggctactta cccctaaaaa aagtgtacag
     1021 ttacaaccct gtgcctcatg aactaagccc cgaacaggcg cagtatattt taggcgccca
     1081 aggcaatgtt tggactgaat atatgcccac gtttgagcaa gttcagtaca tggtgtttcc
     1141 tcggattttg gccttgagtg aggtcgtgtg gcatggtccc gcaaaatcat tagaccggga
     1201 atatgccggg ttcacacgcc gcgttgggtc ctttttcgct cgcctggacg ctatgggggt
     1261 taattacgcc aaccatttat acgatatcgc ctcggttcat cgggttgaat tctcgtcgag
     1321 tccaaagaat caaaatggaa ccaatggaca aatttcagac aacgatgaca agatcaattc
     1381 cccggagcga aacgccgcac aggcctctga acaatccgcn nnnnnnnnnn nnnnnnnnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnct gaacaatccg cggtgcaggc cacaattagc
     1621 tacgcgctga ttaatcctct gccagacctc aacatggaat accgcctaaa ccaagggccg
     1681 tggaccgctt acacaggacc gattaatatt acagaaaata cgggtctcca ggcgcgcctg
     1741 cttcgtgatg gtcaaaccgt gggccgtctg atgcgcgata gcctgatgct tcacgctggc
     1801 ttagggagcg tgagtcgtgt agtcccggag ccgcactcga gctacaatgc gggggggatc
     1861 accgcgctta ccaacggtaa gcgcggtgac gacaaacgct atggcgacag cgaatggctt
     1921 ggctttctgg gcaaggatat ttcaataaag ctcgacttga agcaaggcgc cgaagctcag
     1981 ggccttaatc tacgctttta tcacagcccg gggcaatgga tttacgcgcc taaatcaata
     2041 aggcttgagc tcgtttactc agatggtcaa caaaaaacca taacactgcc tgttgatact
     2101 cccgctgaaa acggaccgca tgcccagagc tgggccctgc caaatgcacc gggaacggcc
     2161 ataaaatctt gcgcgctcaa ggtcaccnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn cgctcaaggt caccccgtac
     2281 gggattattc ctcaaggaga gcaaggcgca ggacaaactg cttggacttt tattgacgaa
     2341 ataatttttg aaaaatgatc gtagagattt gtgttcaatc gttaaacggc gccaaaatgg
     2401 ctcaagagtt aggcgccgat cgacttgaat tatgtgcggg tctagaagtc ggtgggctta
     2461 cccccagcat ggggcttttt actcaagtca aaagccaagc ccaaattcca gtccatgttt
     2521 tgattcgtcc gcgcattggg ggatttcatt attcacctga agaggtcaat accatgattc
     2581 acgacctgag actcttggtc gaaacgggcg cagacggcat cgttatcggg gcgctcaatc
     2641 cagattttac gctcgatctc aaaacattag caagactgat tcacgaggct caagccataa
     2701 accctaaaat tcacattacc gcccatcgcg cttttgattg ggtccccaat cctgtggatt
     2761 cagcgaaatt actgagcgat ttaggcgggc acaccctgct ttcttcaggg caagcgccta
     2821 cggctaaaga aggctttgaa ttactccaga gcctcaatgc taaatttgga gatcaaataa
     2881 ccataatgcc cgggnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnt acccgccaca aatgtttctt ttgaagagca ccgacaaaaa
     3121 ggtcaaagac gtgaaataaa tcacgagcac ttaaaagact tacttcaccc aggttgaaaa
     3181 cggcttttcc accaaagatg cattagtgta ttttccttct gaggtgacct ccgcgcccaa
     3241 ccaatcaggg cgttggaatt gggcggtgac ctcgggtaat tcaacctccg ccagaatcaa
     3301 gccttggttt tgtccgtgaa acacatctac ctcaaaaata cagccctcaa agggcactaa
     3361 atatcttgtt ttttcgatag gatacggtag gcagagcccc atgagcgcgt ccccttcttg
     3421 ataatcgatg gactgttccc attctacgcg gctcaatccc ttatccaaag actttccttt
     3481 aatggttatc catgcttgac gccgatcaga atccaaatct cgcgaaaggc gaacccgcac
     3541 cacgcgccca ggatccgtgt ttaaataacc ttgacgcatt tctacccgtg aactcgctcg
     3601 ggtgataaac gcatcgctta ggaccaaaaa tttacgttct atttccaggg acaatcccat
     3661 aaggtggcat attagcgtgt caaagttagc aaatcagaac ttaggg
//
LOCUS       DPUP01000053            3976 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_36218,
            whole genome shotgun sequence.
ACCESSION   DPUP01000053 DPUP01000000
VERSION     DPUP01000053.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3976)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..704)
                     /locus_tag="DHV98_01715"
     CDS             complement(<1..704)
                     /locus_tag="DHV98_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010254049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCK05105.1"
                     /translation="MGKNLTSRAEDYSKWYNELVVKADLAENSGVRGCMVIKPYGFSI
                     WEMMQKELDRMFKETGHQNAYFPLFIPKSYFSKEASHVDGFAKECAVVTHYRLKTAED
                     GSIVVDENAKLEEELIVRPTSETIIWDTYRKWIQSYRDLPILINQWANVVRWEMRTRL
                     FLRTAEFLWQEGHTAHATEQEAIAEAQQMMHVYADFAEHFMAVPVIKGTKSANERFAG
                     ALETYCIEAMMQDGKAL"
     gene            805..>1626
                     /locus_tag="DHV98_01720"
     CDS             805..>1626
                     /locus_tag="DHV98_01720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05106.1"
                     /translation="MKTVNQNLKKAAAWATYGFAAITLVSCNTYKGVADEEDGIYGDN
                     YIVEESTAIEGKNNYYQQYFSTKAAQIEEVPEENLVFTDIDAYSSQESLDEEGYVVVE
                     EDYIDDYGSWGSNANEVTVNVYGGWNNGLYGNGWNTGYWYGGWNAGYWGGFRPWGFNY
                     WNNPYWGYSSYWGANPYWGWGNAYYNPWFYYGSGWGYNGHYNPWYFNNNGYTTIANRG
                     RSNQDRFVSRGRSDRSNMGTREQSGLRGRNSSDLNRGRTTRSNREFDLSRGRNNAV"
     assembly_gap    1627..1769
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1834..2226
                     /locus_tag="DHV98_01725"
     CDS             1834..2226
                     /locus_tag="DHV98_01725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05107.1"
                     /translation="MAQSRVNPNARNTQAPNNRPTQSNENNRNVSRGSAQAVPPVNTT
                     RPVAQTVAPSNTAKNFKIKRRSRPTSGNTSARPSNNTATQKSFKSENAAQRSFNAPSF
                     QSTRPMSAPRNYSRPSSGRGSGGRGGRG"
     gene            2299..3825
                     /locus_tag="DHV98_01730"
     CDS             2299..3825
                     /locus_tag="DHV98_01730"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05108.1"
                     /translation="MNNSLNTKTPVLSLVFFILLNSNSWSQITQDYLQFSQLDPFGSA
                     RIQAMGGAFHALGGGVSSLHFNPAASAVNINSKVDFGLTIGGRKTKSNFSGSQNSSKD
                     NYFDFGHAGGVIVAEQINENSPWRKISFGFSMATLKNFDQSIAVSGNTDFGLSNYFSD
                     RAQGTTLSELQLGSGETLGSAYAYLGNTLGRGAQLGLLAYQAYLINPVNEANNNINYV
                     SAVNDLRRQNTFQELGGSMRQFNLNIATQYGDDLFLGLNINSHILRYTRSNIVSESSV
                     AANSPLQGLTYRSFERTDGEGFSVQAGAIYTPGDHWRMSLSYDSPTWWQLTEESTESL
                     SSSFIINQGLENYSMDPDVRNYYEPYRLRTPGQWNAGLAYVFGPQGLISASISHKDYS
                     AGAFNNNGSEFFQSANAHVQRLYDQSISAKIGGEYRYGPWRLRAGYRMETQSLKDSGL
                     DDNFGYSYGFGFYGGGWSIDAALVNTSLNSSTALYQEENRFTTNLTNQSFILSFGIDL
                     "
BASE COUNT         1125 a          826 c          844 g         1038 t
ORIGIN      
        1 agtgcctttc cgtcttgcat catggcctca atacaatagg tctctagagc ccctgcaaat
       61 cgttcattcg cagattttgt gccttttatt acaggaacgg ccataaaatg ctcagcaaaa
      121 tctgcgtaaa catgcatcat ttgctgtgcc tcagcgatcg cttcttgttc agtagcatga
      181 gccgtatgcc cctcctgcca taaaaattcg gctgtgcgta aaaacaaacg tgtacgcatt
      241 tcccagcgaa ccacattcgc ccattggtta atcaaaatag gtaaatctcg ataagactga
      301 atccactttc tgtacgtatc ccaaataatg gtctctgagg taggccgaac gattaactcc
      361 tcttctaatt ttgcattttc atcgacaaca atactgccat cttcggcggt ctttaatcga
      421 tagtgcgtta ccacagcaca ttcttttgcg aagccatcga catgactcgc ttccttacta
      481 aaataagact taggaataaa taatgggaaa taggcgttct gatggcctgt ttctttgaac
      541 atacgatcga gttccttctg catcatttcc caaatcgaaa agccataagg tttaatcacc
      601 atacaaccac gaactcctga attttcagct aaatcagctt ttacgaccag ttcgttatac
      661 catttggaat aatcctcggc tcttgacgtt aagtttttcc ccatattgag agagttggca
      721 cagtaattgc acttgagtta aaaaaagtta tgtttcggca aaactactta tttttatcat
      781 gttcaacaat ttaaatctat cgttatgaaa actgtaaatc aaaatctaaa aaaggcagct
      841 gcatgggcaa cttatggatt tgcagcaatc actcttgtaa gctgtaacac ctacaaaggc
      901 gttgcggatg aagaagatgg aatctatggt gacaactaca tcgtggaaga atcgactgcg
      961 atagagggta aaaacaatta ttaccaacaa tatttcagca ccaaagcggc ccaaattgag
     1021 gaagtaccag aagaaaattt ggtcttcaca gacatcgacg cctacagttc gcaagagtct
     1081 ttggatgaag aaggttacgt agtcgtagaa gaagactata tcgatgacta tggctcgtgg
     1141 ggcagcaatg ccaatgaggt caccgttaat gtttacggag gttggaacaa tgggctctat
     1201 ggtaatggct ggaacacggg ttactggtat ggtggatgga atgctggata ctggggcggt
     1261 tttcgtccct ggggatttaa ttattggaat aatccatact ggggatatag cagttattgg
     1321 ggcgcaaacc catactgggg ttggggtaat gcctactata acccatggtt ttactacggt
     1381 tctggctggg gttataacgg ccactacaac ccgtggtatt tcaacaataa cggctacacc
     1441 accattgcca acagagggcg ctcaaatcaa gatcggtttg tctcaagagg acgttcagat
     1501 cgatcaaata tggggacacg cgagcaatcg ggtcttagag gccgcaacag cagtgatttg
     1561 aatcggggca gaaccacgag atcaaacaga gaatttgatc ttagcagagg ccgaaataac
     1621 gccgttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt cgaaattctg cggtccgcgg cagaggaagc
     1801 tctcgagttt ttgcggaaaa cagaacgagc tctatggcac aatcacgggt caacccaaat
     1861 gcgcggaata cccaagcccc aaataataga cccacgcaaa gcaatgaaaa caaccggaat
     1921 gtttcccgtg ggtctgctca ggcagtgccc ccggttaaca caacacgacc tgtagcgcaa
     1981 acggtagcgc ccagtaacac ggcaaagaat tttaaaatca aaagacgaag cagacctact
     2041 agcggtaata cgagcgctcg tccatcgaat aatacagcaa cccaaaaatc gtttaaatca
     2101 gaaaatgccg cacaaagaag ttttaatgcg ccttcatttc aaagtaccag accgatgagc
     2161 gctccacgca attattcacg tccttcctca ggtcgtggtt ctggcggacg cggagggcgc
     2221 ggataatccg atttaagtgc attaattttg gaagttgacc taagtcaagt cttattcaaa
     2281 cctgtataaa gtttaaaaat gaacaatagc ctcaacacaa aaacaccagt gctctcgctg
     2341 gtgtttttta tactactcaa ttcaaattct tggagtcaaa ttacccaaga ctatttgcag
     2401 ttctctcaat tagacccctt cgggtcagca agaattcaag ctatgggggg cgcatttcac
     2461 gcccttggcg ggggcgtaag tagtcttcat tttaaccccg ctgcgagtgc ggtaaacatc
     2521 aatagcaaag tcgatttcgg tctaactata gggggtcgga aaacgaaaag caatttttca
     2581 ggaagtcaaa actcatctaa agataattat ttcgattttg gacatgcagg cggggttatt
     2641 gtggcagaac aaataaacga aaatagccct tggaggaaaa tatcttttgg gttctccatg
     2701 gctactttaa agaattttga tcaatccatt gcggtttctg gaaatacaga ttttggtcta
     2761 tcgaattact tttctgaccg agcccaaggc acgacgctct ccgagttaca attaggttct
     2821 ggggaaacgc ttggttccgc ttatgcctat ctcggaaata cattagggcg cggggcgcaa
     2881 cttgggttat tggcttatca agcttattta ataaacccgg taaatgaagc caataacaat
     2941 ataaattatg tcagtgctgt caatgacctg cgccgtcaaa atacgtttca agaactgggt
     3001 ggctccatgc gtcagtttaa tctaaacatc gcaacccaat acggtgatga tttgttttta
     3061 ggcctaaaca taaacagtca tattttgaga tacacgcgct caaatattgt ttctgagagc
     3121 tcagttgcag ccaacagtcc gctacagggt cttacctaca gatcttttga aagaaccgat
     3181 ggggaagggt ttagcgtaca agcgggggcg atttatacac cgggtgatca ctggcgtatg
     3241 agtctctctt acgatagtcc cacttggtgg cagttaaccg aggaatccac agagtccttg
     3301 agcagctctt tcataattaa tcaaggactt gaaaactatt caatggaccc tgatgtccga
     3361 aactattatg aaccttaccg cttgagaaca ccaggccaat ggaatgccgg cttggcctat
     3421 gtattcggtc cgcaggggct aatttctgct tcgattagcc ataaagatta tagcgcaggg
     3481 gcatttaaca acaatggatc agaattcttt cagtcggcta atgctcatgt tcagcgctta
     3541 tatgaccaaa gtataagtgc caagattggc ggggaatacc gttacggtcc atggagactg
     3601 cgcgcaggat accggatgga aacccagtcg ttaaaagatt caggactcga cgataatttt
     3661 ggctacagtt acgggtttgg cttttatggc ggtggatggt ctatcgatgc ggcccttgtt
     3721 aatacttcgt tgaattcatc cacagccctt taccaagagg aaaacagatt taccactaat
     3781 cttactaatc agtcttttat tctgtccttt ggtattgact tgtagatttt attatatccg
     3841 tatagatgga aagatagcct gaccggcagg caagaagaca ataaaaaaag agtcgctcct
     3901 attgttgtat caatttggaa tgactctttt tttgaattct attttatatc aggatctatc
     3961 tttttaatgt aaaatg
//
LOCUS       DPUP01000054           23448 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1476,
            whole genome shotgun sequence.
ACCESSION   DPUP01000054 DPUP01000000
VERSION     DPUP01000054.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 23448)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 23448)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23448
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..535)
                     /locus_tag="DHV98_01735"
     CDS             complement(<1..535)
                     /locus_tag="DHV98_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008634514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HCK05109.1"
                     /translation="MKAGIVGLPNVGKSTLFNCLSQAKAQSANFPFCTIEPNVGVVNV
                     PDPRLIKLEELVQPQRVIPATVEIVDIAGLVKGASKGEGLGNQFLANIRETDAILHVL
                     RCFDNDNIVHVEGRVNPESDKEIIDMELQLKDLETVEKRLEKVHRAARTGNKEAQKEQ
                     DVLNQVKHGLSSGISVDR"
     gene            638..1090
                     /locus_tag="DHV98_01740"
     CDS             638..1090
                     /locus_tag="DHV98_01740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05110.1"
                     /translation="MTINKYLFIFFLSPLTFFGQNNETVKEVVTVKRVITNNGQNITI
                     SEQQATQQIKGTVVVAGDSIVNQRAVEQSIQINDTIKAEEQRIKDSVNQAKVAQIKAA
                     REAELKASIEAHKAKAEAQKKALEEQYQKQIEALEEKRKALMKKPDNK"
     gene            complement(1112..1462)
                     /locus_tag="DHV98_01745"
     CDS             complement(1112..1462)
                     /locus_tag="DHV98_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HCK05111.1"
                     /translation="MAIIITDECINCGACEPECPNTAIYEGADDWRYSDGTDLKGDVI
                     LPSGKAVNAQEPQIPVSDEYYYIAPDKCTECIGFHEEPQCAAVCPVDCCVPDDQHVES
                     EEVLLAKQRFMHHE"
     gene            1527..2543
                     /locus_tag="DHV98_01750"
     CDS             1527..2543
                     /locus_tag="DHV98_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA reductase"
                     /protein_id="HCK05112.1"
                     /translation="MQLNQRINAFVALGHEINKMAHKPESYVDLFALTYGHNKWFDQT
                     QVCFALAQWADQLTQRNLEEWLVPYKTEFIGGKTIALVLAGNIPLVGFHDILSALISG
                     HNIQCKSSSKDPVLTKFILEKLLRIEPRFNPFIQWMDGPLKNFDGVIATGSNNSALHF
                     EHYFKNYPNIIRKNRTSVAVLKGDERPEQLSALAQDIFRYFGLGCRNVSKLYVRRGFD
                     FQPFFGAAYAFGHVIQHDKYMNNYDYNKAVYLMGQVPLLDNEFLLLKEDTDLVSPIAV
                     VFYEYYDDPKNLSIHLQGLEEKIQCIVGAEPNLCTVDFGQSQCPLLSDYADGVDTLAF
                     MNSL"
     gene            2672..>3723
                     /locus_tag="DHV98_01755"
     CDS             2672..>3723
                     /locus_tag="DHV98_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010180870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HCK05113.1"
                     /translation="MKKHNFSAGPSILPQEVMQQASEGLLNFNNSGLSIMEISHRSKD
                     FIDVMDQACALSLDLLGLDNKSYSALFLQGGASTQFVMAPYNFLRQKAAYLNTGTWSS
                     KAIKEAKLFGQVEEVASSKDQNFAYIPKGYHIPEDSDYFHCTSNNTIFGTQIQEVPET
                     EVPVFCDMSSDIFSRALDYTKYDLIYAGAQKNMGPAGTTLVLVKNELLGEAPRPIPSM
                     LDYRVHQDKGSMFNTPPVVAVYVSQLTLKWLEAKGGVSAIEKLNREKANQLYTEIDRN
                     ALFKGFAHREDRSIMNATFNLTDETNKALFDTMCKEAGISGINGHRSVGGYRASIYNA
                     MPLESVQVLIEVMKEF"
     assembly_gap    3724..3774
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3849..4799
                     /locus_tag="DHV98_01760"
     CDS             3849..4799
                     /locus_tag="DHV98_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010521773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoglycerate dehydrogenase"
                     /protein_id="HCK05114.1"
                     /translation="MKVHANDGISQSGIDALAQAGYSVSTTKVAQEQLVDFINREAVQ
                     VLLVRSATTARKELIDACPGLKIIGRGGVGMDNIDVDYAQSKGLHVINTPAASSASVA
                     ELVFAHLYGGVRFLHQSNRAMTLEGDTNFGALKKAYAKGRELRGKTIGIVGFGRIGKA
                     VAQIALGSGMRVIYFDQYVPSASVSLKFYDQQEVNFDLTASSFEIVLSESDFITLHVP
                     AQKDYIIGASELAQMKPGAGLINAARGGVVDEVALIAALESRHISFAALDVFENEPTP
                     AIQVLMNEYCSLTPHIGAATNEAQDRIGEELAAQIIELTA"
     gene            4879..5166
                     /locus_tag="DHV98_01765"
     CDS             4879..5166
                     /locus_tag="DHV98_01765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglyceryl transferase"
                     /protein_id="HCK05115.1"
                     /translation="MFEKLKKRWNVNSNFQVTKILVVFALTGSSSAKVTGPLLKLSPV
                     LAGLEPVYFNTIYVIATLVLYQFLLLLFGWLFGEKEFFILFLKKFFRRRSS"
     gene            5163..5501
                     /locus_tag="DHV98_01770"
     CDS             5163..5501
                     /locus_tag="DHV98_01770"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05116.1"
                     /translation="MSKKAINKQKRNYRFTGLILGLLLLLPSLIQLGHLLEGHQHLGC
                     NQNSTHLHELDHKCDVLAFHFSALSFSFNESTEEQKLVVFDPPNFWHSAFFTNRDLAT
                     KFSRGPPTMI"
     assembly_gap    5553..5614
                     /estimated_length=62
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5622..>6822
                     /locus_tag="DHV98_01775"
     CDS             5622..>6822
                     /locus_tag="DHV98_01775"
                     /inference="COORDINATES: protein motif:HMM:PF13715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05117.1"
                     /translation="MHKLFWVLVLSISPFSQAQICDLTFAGRILDQHDDSALSHALIS
                     IEELNVSTFSDQDGRFSFDHLCLGTYTLSVIHAQCNARSFSIKLKDNSFKTLKLEHHY
                     EELNEVLLSGSSEGLVSAAKEVIDAGTIERSSNQSLGDLVSEVTGVSGFSFGNTVIKP
                     SIHGLHSSRVTIMNNGVRMEDQEWGAEHAPNVDVNLAHSIEIIKNASALQYSGDAIGG
                     FVILKPQRIPIKDTLYGKARLSAQDNGRGGSAHVGLIKSTAMGWYGSVEGTFKKYGDF
                     NAPEYSLSNTGMNSYALAGKLGFNEFKRGFELSYNRLENTVGILRASHLGGAQDQFVA
                     INSPEPLIINDFTYNIDRPKQEVSHQIMSAKAFVKSDKFGRIDLRYDFQKNDRLEYDV
                     RRGSDQNK"
     assembly_gap    6823..6956
                     /estimated_length=134
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6957..>7909
                     /locus_tag="DHV98_01780"
     CDS             <6957..>7909
                     /locus_tag="DHV98_01780"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05118.1"
                     /translation="SDQNKASLDLDLQTHAVSLDLAPKLVGFNSLKTGFSGRYLKNKS
                     NPNTGVKRLIPDYKRYDLGFYALATKSLNNDLVVDAAVRLDYMRIESFKYYYSALWTQ
                     RGYDTTFAAFEVEDLGTQILTAPKFNYLNPSASLGTSWALNEQNRLSMNLSLGARNPN
                     PSELFSEGLHHSASRIEIGDLRFKPEIAKNLSLGYRYQNTKLNFSVNPFVRLIDRFIL
                     IEPTGIQQTIRGNFQVWSYRQTDVSLSGLDMDTQYAFTNKFGFQQQFSLVKGYELETK
                     TPLINMPGVNMINALNYTYKQIEMRIESDYTWRQNEFPDTN"
     assembly_gap    7910..8019
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            8253..8807
                     /locus_tag="DHV98_01785"
     CDS             8253..8807
                     /locus_tag="DHV98_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013871008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 periplasmic binding fold superfamily
                     protein"
                     /protein_id="HCK05119.1"
                     /translation="MKNYALYSFILLTGLLFTACSDDDTPPAQVDEEEVITTLMVTLT
                     SNTGQTITLNSQDLDGDGPNDPTISVSAPLSVATTYSGVIELFNETVSPAEPVHEEVA
                     EESAEHQFFYTQGGNINVTTNYEDFDGNGNPLGLSFSLSTTSAGQGTMTFTLRHEPLK
                     PNDGTLSGAGGETDLSVTFPITIE"
     gene            complement(8859..9380)
                     /gene="msrA"
                     /locus_tag="DHV98_01790"
     CDS             complement(8859..9380)
                     /gene="msrA"
                     /locus_tag="DHV98_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006794992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HCK05120.1"
                     /translation="MEKIILAGGCFWCTEAVFTGVRGVISIVSGFSGGAIKNPAYREV
                     CQGRTGHAECIELTYDPKELSLEVILDLFFKTHDPTTLNRQGHDVGTHYRSAIFYTTE
                     DQKSTVGAYILALEQNSVYPSPIVTEVAPFDAFYPAEVEHQEYYKNNPNQPYCQFVIK
                     PKLDKKEEYLTKK"
     assembly_gap    9458..9548
                     /estimated_length=91
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            9611..10264
                     /locus_tag="DHV98_01795"
     CDS             9611..10264
                     /locus_tag="DHV98_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013688198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing system ATP-binding protein
                     LolD"
                     /protein_id="HCK05121.1"
                     /translation="MVQAKNITKHYGQLQVLKGVDLTVEKGEIVSIVGASGAGKTTLL
                     QILGTLDRMDQGSLSINGINPFDLNAKALAQFRNESLGFIFQFHQLLPEFSAVENVCF
                     PALIQNQSMSKAKIRAKELLDYLSLSHRFDHKPGALSGGEQQRVAVARALMNQPALIL
                     ADEPSGNLDTQNAQELHQLFFDLRKAFNQTFIIVTHNSDLAQMADRQLVMENGNFKP"
     gene            10267..11034
                     /locus_tag="DHV98_01800"
     CDS             10267..11034
                     /locus_tag="DHV98_01800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HCK05122.1"
                     /translation="MRPKAIKDLLERKLELYYNDGFIADDPLQIPHQFSHKEDIQIAA
                     LLTATIAWGQRKTIIKNAREMMALMDDAPFDFILNHEQRDLNLMNHFVHRTFNSSDLI
                     FFVSGLKHIYSDLGGLESVFKAPNSAPYLHQSIHNFRQCMFEVPHQKRSEKHISDPLN
                     KSAAKRLHMFLRWMVRPCKRGVDFGLWTSIKPSQLSCPLDVHTGNVARSLGLITRKQN
                     DILALHQLDQALRSFDPVDPVKYDFALFGLGLNHDFV"
     gene            11262..11648
                     /locus_tag="DHV98_01805"
     CDS             11262..11648
                     /locus_tag="DHV98_01805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05123.1"
                     /translation="MHVADLYAGQNILIGSLEVANYDDQVYVTYKTNGNWSLKKTHLF
                     VGDFSDFPMNSGGNPQVGRFPYKRTHPNGTQEFTVVGPDVYSSSCYFHAAHAEVVNGN
                     GQSESAWADGDPLGGNSWAMGFNQCY"
     gene            11714..>13127
                     /locus_tag="DHV98_01810"
     CDS             11714..>13127
                     /locus_tag="DHV98_01810"
                     /inference="COORDINATES: protein motif:HMM:TIGR02226"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05124.1"
                     /translation="MYICAIIESMTFLRPEILTALILLTLPIIVHLFEFRIFKPTVFS
                     NLLFLEHLKHEQHRYQKLKRWLILLLRLGYFTGIIMAFALPTIPEQSNTLQDAPAYLL
                     YLDNSFSTTAKGFSGSSLLSEAKEELYQWSKSLDGNQINWFTNDAQYPNQSIKDFQQT
                     ILSLSASPRQHSPEQVTLNAQRMFAQMGASNRHLIWYTDHQNWSVPSNLDGIELTLRS
                     LIATDRTNICLEKAAIDRSDPDKTRLSVLLSNNLNEEQSITIRVYKEDKLFTQTGTKL
                     SPGQDKTVDFDLGALNKFKGMVTIEDRGLGYDDTLYFNVPPQPKVKVLSIGQKSHAVL
                     RSIFDEKDFSYNQRDLSTLDFSLIREQNLIILDQLPSINNALIGALKEHLLNSGGLVI
                     IPEMATMETAQQILSEFRLGRISSLNQQSRTVIEINANDPFYKGIFEQNVADFQYPTV
                     GQSYNVNTQARTLLSFDQGTP"
     assembly_gap    13128..13248
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <13249..13780
                     /locus_tag="DHV98_01815"
     CDS             <13249..13780
                     /locus_tag="DHV98_01815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05125.1"
                     /translation="GPGTNFDQSPLSVVTLIQLARQTQIFPELYYPTFSERSIENQTN
                     NSSKQSVLAGSLVADQVVILTQTSEQIIPRQQQIQENIVIDFEGIDFNSGHYSARLDE
                     NEIGCFSFNHPRNESHDRFNLPELGTTQIKTTKNMDNAMAMITQNLEGKQLWVWFAIF
                     ALICFMAEMFILKQTT"
     gene            13777..15030
                     /locus_tag="DHV98_01820"
     CDS             13777..15030
                     /locus_tag="DHV98_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HCK05126.1"
                     /translation="MRTLLKSVTIIDPQGPFHKQVVDILIDQGIIENMAPSISDDRAD
                     LVDLPNAHVSFGWFDPSVSLGEPGFEERETIINGSLVAAKAGYTAIAVQPNTNPVTQS
                     QAAVSFIKAKEDLVSLFPIGALTIDTQGHDLCELYDMHNAGALAFGDYKKPIKDPNIL
                     KLALEYTQSFSGLICSFPMDASLGISGMINESTQSVQLGLKGIPKLSEHLQIKRDLSI
                     LKYSGGRLHIPTISTAESVGLIREAKKQGLNVSCSVAIYNLSLTDQVLETFDSNYKLM
                     PPLREHEDQKALLDGLLDGTIDGITSDHNPVDIEHKNVEFDQAMFGSVGLEQTFGVLA
                     RITNNIEDTVKALTGLRQCFGLEIASIAPGGKANLTIFTPEGANEVQIQQLSSKSKNA
                     ALIGCPTKGRVFGVINGNKQFWNEQ"
     gene            15020..15343
                     /locus_tag="DHV98_01825"
     CDS             15020..15343
                     /locus_tag="DHV98_01825"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05127.1"
                     /translation="MSSSQGSGPKFHKVIPYLTFIGLLIAYQLNKDYKDPETSWHIKN
                     MFGLLLGLFAAVWLQNYPIGFYVYWTVFCFWIYALLMALLNQKRGIPYLSNAFQRWFK
                     FLDQQ"
     gene            15340..15999
                     /locus_tag="DHV98_01830"
     CDS             15340..15999
                     /locus_tag="DHV98_01830"
                     /inference="COORDINATES: protein motif:HMM:PF02230.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HCK05128.1"
                     /translation="MSSIIGPLDLPLSHLYRPSALKNNAPLLVLLHGYGSNMHDLFGF
                     APYIHEKFAIVALQAPIPLGGPSYAWYNIYFDQPQGKWSDAQQGKESVQLVLDVLDQI
                     TQQIDVNTLEVNLLGFSQGAILSYAAAMSHGHLSKVICLSGYLNEELLPDNARLNSCQ
                     GSRFFASHGDQDQVIPVAWARKSSRRLNELGCDLEYHEFPVGHGVSPDNFTALNSFLN
                     G"
     gene            complement(16041..16532)
                     /locus_tag="DHV98_01835"
     CDS             complement(16041..16532)
                     /locus_tag="DHV98_01835"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05129.1"
                     /translation="MKSRIYMYLFFFSILLVLFMYVNQSAIFERQTAVINSLEQKQLA
                     LKDTVIALNQEISELLYFDLLTNDSARTYFEQIGLEPEDAANQVKERIYEYNLQKGGN
                     PLVPFANANGQWRINRIKFLNHRWVIADCSDGSAWGELWIEYFFDQEGQLDLTVESSV
                     LYP"
     gene            complement(16532..17319)
                     /locus_tag="DHV98_01840"
                     /pseudo
     CDS             complement(16532..17319)
                     /locus_tag="DHV98_01840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003435540.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
     gene            17399..18854
                     /locus_tag="DHV98_01845"
                     /pseudo
     CDS             17399..18854
                     /locus_tag="DHV98_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013071953.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
     gene            complement(18905..19363)
                     /locus_tag="DHV98_01850"
     CDS             complement(18905..19363)
                     /locus_tag="DHV98_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013552169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HCK05130.1"
                     /translation="MNTLKVGDKAFAFDALDQDGTRRTLADYAGKKLIVFFYPAASTP
                     GCTAEACNLTDNYSALQQGGYAILGVSADNASKQKKFKEKYAFPFPLLADTEKSVIQG
                     FGVWGEKKFMGRTYDGIHRVTFLIDENGLISRVIDKVETKDHAAQILSEE"
     gene            19428..20069
                     /locus_tag="DHV98_01855"
     CDS             19428..20069
                     /locus_tag="DHV98_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HCK05131.1"
                     /translation="MTQSEKVAFVIQTLEALYPETPIPLDHKDPYTLLIAVLLSAQST
                     DARVNTITPLLFEKADNPYDMLKLSVEQIREIIKPVGLSPMKSKGIYGLSKILVEQYN
                     GSVPQSFEALEALPAVGHKTASVVMAQAFGVPAFPVDTHIHRLMYRWGLSTGKNVVQT
                     ERDAKRLFPQDKWNDLHLQIIFYGREYSPARGWDREKDIITKTIGRAEFRKTP"
     gene            complement(20333..20917)
                     /locus_tag="DHV98_01860"
     CDS             complement(20333..20917)
                     /locus_tag="DHV98_01860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-24"
                     /protein_id="HCK05132.1"
                     /translation="MKYSINSDALLVNAYVNGDESALGELIARHKDRIYRFIYSKVYD
                     RDVTEDIFQDTFVKVINTLKKGNYNEEGKFLPWVMRIAHNLVIDYFRRNNRMPKFESN
                     DDFNIFSVLSDGDLNAERSMIKDQVQKDVQRLIEELPEDQKEVLTMRIYKDMSFKEIS
                     EQTGVSINTALGRMRYALINLRKVIDKHQIVLTN"
     gene            21172..>23448
                     /gene="uvrA"
                     /locus_tag="DHV98_01865"
     CDS             21172..>23448
                     /gene="uvrA"
                     /locus_tag="DHV98_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HCK05133.1"
                     /translation="MIREAISIQGAKLHNLKNINVDIPRYKLVVITGLSGSGKSSLAF
                     DTLYAEGQRRYVESLSSYARQFLGRLDKPKVDNIKGIAPAIAIEQKVNATNPRSTVGT
                     ATEIYDYLKLLFARIGLTYSPISGLEVKRDQVSDVVDIVKSMPQGSKLLLLAPIHLEA
                     QRSLKDKLGVLAQQGFSRVLHNNETVKISEVTAKNTEELYLIVDRVVTADDEDFLNRL
                     ADAVQIAFYEGKGSLALKEVDRDQMHRFSNRFERDGMTFLEPNIHLFSFNNPFGACPK
                     CEGYGDIIGIDPELVIPNTGLSVYDNAIFPWRGESMSYHRDQLVNRAYEFDFPIHKPI
                     HELSSQQYELLWTGNKYFMGLNDFFGELEAKNYKIQNRVMLSRYRGKTICPECKGTRL
                     RNEASYVKIDGYNLQDLMNLPLEELLPIIDQLKLTEYQQQVSKRLLTEIKNRLNFLHD
                     VGLGYLTLNRKSNTLSGGESQRINLATSLASSLVGSMYILDEPSIGLHPKDTQRLIGV
                     LQKLRDLGNTVIVVEHDEDIMRAADHIIDIGPEAGRFGGSVMAEGPLKELLKKPGLTA
                     DYLSGRLMIEIPKNRRVTQKKILLQGARQHNLKNVTVTIPLGQMTAVTGVSGSGKTTL
                     VKRILYPALQRHLTGYGDKPGAFDQLSGDLSALHHIEFVDQNPIGRSSRSNPVTYIKA
                     YDDIRKLYADQKLSTLRGYKTKHFSFNVDGGRCDLCKGEGEVTIEMQFMADVHLECEA
                     CKGQRFKKEILEIRVDERS"
BASE COUNT         6862 a         4783 c         4701 g         6529 t
ORIGIN      
        1 tccgatctac cgatattcct gaagaaagtc catgtttaac ctgattgagt acgtcttgct
       61 ctttttgagc ttctttattt cccgttctgg cagcacgatg gaccttttcc aaacgttttt
      121 cgaccgtctc cagatccttg agctgcaact ccatgtctat gatttccttg tcggactctg
      181 gattaacacg gccctcgaca tggacaatat tatcgttgtc aaagcatcgc agcacgtgca
      241 aaatagcatc tgtttctcta atgttggcta aaaactgatt ccctaacccc tcacctttac
      301 tggccccttt gaccagtcct gcgatatcta cgatttctac agtagcaggg attacgcgct
      361 gaggctgaac caattcctcg agtttaatca agcgtggatc agggacattg accaccccta
      421 cattgggctc aatagtacaa aacggaaagt tggcgctttg ggctttggct tgtgacaaac
      481 aattaaaaag agttgatttt cctacgttag gcaatccgac tatacctgct ttcatagtgc
      541 ttaattatgg gctgcaaata tatcatttag acttcataaa atattaattt ttggaaattt
      601 aggcctgggc gatgtaactt ggtcaaaaat taatgccatg acaattaaca agtacctctt
      661 cattttcttt ttgagtccac tgacgttttt tggccagaat aatgaaacag taaaagaagt
      721 agtgaccgtt aaacgggtca ttaccaataa cggtcaaaac attacaataa gtgaacaaca
      781 ggcaacccaa caaatcaaag gtactgtggt tgtggcggga gacagtattg tcaatcagcg
      841 tgcggtagaa cagagtattc aaattaatga taccatcaaa gcggaagaac agagaataaa
      901 agacagcgtc aaccaggcca aagtagctca aataaaagcg gccagagaag cagaattaaa
      961 agcgtctatt gaagcgcata aagccaaagc cgaagcgcaa aagaaagccc tagaggagca
     1021 atatcaaaag cagattgaag cccttgagga aaaacgaaaa gcgctgatga aaaaaccaga
     1081 caataaatag ttaggaatta caaccaaaag gctattcgtg atgcataaaa cgctgcttgg
     1141 caaggagtac ctcttctgac tcaacgtgct gatcatcagg gacacagcag tcaacgggac
     1201 acacggcggc acattgcggc tcttcgtgaa atcctataca ttcggtgcat ttatcaggag
     1261 cgatataata gtattcgtcg ctaacgggaa tttgtggctc ttgagcattt accgctttac
     1321 ctgaaggcaa aatcacatcg ccctttaaat cagttccatc actgtagcgc caatcgtcag
     1381 caccttcgta aatcgcggtg ttaggacact ctggctcaca cgcaccacaa ttaatacatt
     1441 catctgtaat gataatggcc atagcaattt gtttttctaa ttttgtacaa atttaatatc
     1501 taactggggg ttctccaaac aatctcatgc aattaaatca acgaattaac gcctttgtgg
     1561 ctttgggtca tgaaataaat aaaatggcac ataagcccga atcgtatgtc gatttgtttg
     1621 ccttaaccta tggccataac aaatggtttg atcagaccca agtgtgcttt gccttggcgc
     1681 aatgggcgga tcaactcacc caaagaaact tggaagaatg gttggtccct tataaaactg
     1741 aatttattgg gggcaaaact attgcgcttg ttctggctgg aaacattccc ttggtgggtt
     1801 ttcacgatat actttcagcg ctaatttcag ggcataacat ccagtgtaaa tcctcgagta
     1861 aagatcctgt tttgacgaag tttattttgg aaaagctcct gcgcattgaa cctagattta
     1921 acccatttat tcaatggatg gacggcccct taaaaaactt tgatggcgtc attgccacgg
     1981 gcagcaataa ttcggcctta cattttgagc attacttcaa aaattacccc aatatcattc
     2041 gaaaaaaccg aacgagtgtg gctgttttaa aaggggatga acgcccggaa caattgagcg
     2101 ctttggccca agatattttt cgatatttcg gtttaggatg tcgcaatgtt tctaaacttt
     2161 atgtccgtcg tgggttcgat tttcagccat tttttggagc agcttatgcc tttggtcatg
     2221 tcattcagca cgataaatac atgaataatt atgattacaa caaggcggtt tacctaatgg
     2281 gacaagtgcc tttgctcgac aatgaatttt tactgcttaa agaagacacc gatttagttt
     2341 ccccaatcgc tgtagttttt tatgaatatt atgatgatcc aaaaaaccta agtattcatt
     2401 tacaagggct tgaagaaaaa atacaatgta ttgtcggtgc cgagccgaat ctctgcacgg
     2461 ttgattttgg tcaatctcaa tgtcctcttc tgagcgatta tgccgatggc gtagacacct
     2521 tggcttttat gaattcactt tagttttaac tgagcgaaaa ccttatcgtt taaaaatagc
     2581 gcctttttgt taaaagtata ttgataagtt gtcttgtttt gctcgcggtt tgctccaata
     2641 tttcccatct ttgtaggctc attttagagc tatgaaaaaa cacaatttta gcgctggacc
     2701 ttccatcctt ccacaggaag taatgcaaca agcttcagaa ggtctattaa actttaacaa
     2761 ctctggtctt tccattatgg aaatatccca ccggagcaag gatttcattg acgttatgga
     2821 tcaggcgtgt gccttatcgc ttgatttact tggcctggac aataaaagct acagcgccct
     2881 attcttacag ggcggagcca gcacgcaatt tgtgatggca ccctataatt ttttaagaca
     2941 aaaagcagcc tatctcaata cgggaacttg gtcaagtaaa gccataaaag aagctaaatt
     3001 gtttggtcaa gttgaggaag tagcctcgtc aaaagatcaa aattttgcgt acatcccaaa
     3061 gggatatcac attccagaag acagcgacta ttttcattgt accagcaata atacaatttt
     3121 tggcacccaa attcaggaag tccccgaaac agaggttcct gtattttgtg acatgagtag
     3181 tgatatattc tcacgtgctt tagattacac taaatacgac ttgatttatg caggagccca
     3241 aaaaaatatg gggcctgctg gaacaacatt ggtccttgtg aaaaatgagt tattgggcga
     3301 ggcgccgagg ccaattcctt ccatgctgga ttaccgtgtt catcaagaca aaggcagtat
     3361 gtttaataca ccaccggttg ttgctgttta tgtttcacag ctgactctta aatggctcga
     3421 ggccaaagga ggggtatctg ccattgaaaa actcaaccga gaaaaggcca atcaacttta
     3481 taccgaaatt gatcgcaacg cattatttaa aggatttgcc catcgggaag atcgctcaat
     3541 aatgaatgct accttcaatt tgaccgatga aaccaacaaa gccctttttg acaccatgtg
     3601 caaagaggct ggaataagtg gaattaacgg tcatagaagc gtcggcggat acagagcctc
     3661 aatttataat gccatgccac ttgaaagtgt acaggtgtta atcgaggtga tgaaagaatt
     3721 cgannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncgaggt
     3781 gatgaaagaa ttcgaacgca aacattaggg acgactaaat tattaattac aaagacgcaa
     3841 agaaaatgat taaagtacac gcaaacgacg gcatttcaca aagtggtatt gacgccttag
     3901 cgcaagcagg atattcagta agcaccacaa aagtggccca agaacaactt gttgatttta
     3961 tcaatagaga agccgtacaa gtacttttgg tgcgcagtgc gacgaccgcg cgaaaagaac
     4021 taattgatgc ttgcccagga cttaagatca ttggtcgcgg cggggttggc atggataata
     4081 ttgatgtgga ttacgcgcaa tccaaaggtt tacacgtcat caatacccct gctgcctctt
     4141 cggcctcggt agcagagttg gtatttgccc atttatacgg cggtgtcaga tttttacacc
     4201 aatcaaaccg cgctatgaca ctcgagggag atactaattt tggggcgctt aaaaaagcct
     4261 atgccaaagg acgtgaacta agaggtaaaa ccatagggat tgtcggtttt ggcagaattg
     4321 gtaaagcggt tgctcaaatt gcattaggat cagggatgcg tgtcatttac tttgatcagt
     4381 atgtgccttc tgcctctgta agtttgaaat tttatgacca acaagaggtc aattttgatt
     4441 tgacggcttc tagttttgaa attgttttaa gcgaaagtga ctttataacg ctgcacgttc
     4501 cagcccaaaa agattatata attggcgcct ctgaattagc gcaaatgaag cctggtgccg
     4561 gtttgattaa tgcagcacgt ggcggagtgg tcgacgaggt tgccttgatt gctgcattag
     4621 agtctcgtca tatttctttt gccgctttgg atgtttttga aaacgagcct accccagcca
     4681 tacaagtctt gatgaacgaa tattgttcct tgacacccca tattggagcc gctacaaacg
     4741 aagcacaaga tcgaatcgga gaagaattag cggcgcagat tatcgagctg accgcttaaa
     4801 tggtttgacc aactcggggt tgttaaattc tctaggcgat agagaaaatc aagtcatgaa
     4861 tatctaactt tgcgtcctat gtttgaaaaa cttaaaaagc ggtggaacgt caacagtaac
     4921 tttcaagtga caaagatttt ggtagtcttt gccttaacag ggagttcgtc agctaaggtc
     4981 actggtccat tgctaaaatt aagtcccgta ttggcgggtc tagaacccgt ctatttcaac
     5041 actatttatg ttattgccac cttagtcctg tatcaattcc tattgctact ttttggatgg
     5101 ctttttggtg aaaaagagtt ttttatccta tttttaaaga aattcttcag aagacgatcc
     5161 tcttgagtaa aaaagcaatc aataaacaaa aacgaaatta tcgttttact ggcctaatcc
     5221 tagggctatt attgctattg cccagtttaa ttcaattagg ccacctctta gaaggccacc
     5281 agcatttggg atgcaatcaa aattccactc atcttcatga gctagatcac aaatgcgatg
     5341 tcctggcttt tcacttcagt gctttatcat tcagctttaa tgaatctacg gaggaacaaa
     5401 aattagttgt ttttgatcca ccaaactttt ggcatagtgc gttttttacc aatcgagatc
     5461 tcgcgacaaa attttctagg ggaccaccca caatgattta aaaaccagat tgttataatt
     5521 aataattggc ccatttaaat cattaaaatg cannnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncattaa aatgcacaaa ctattttggg
     5641 tgcttgtact gtctataagc cccttttcac aagctcaaat ttgtgacctt acatttgctg
     5701 gcagaatatt agatcagcac gacgattcag cgctttcgca cgcccttatt tcaatagaag
     5761 aattgaatgt atcaaccttc agtgatcagg acggtagatt ttcatttgat catctgtgtc
     5821 tgggcactta caccttgtcg gtaatccatg ctcaatgcaa tgccaggagt tttagcataa
     5881 aacttaagga caattcattc aaaacactca agctcgagca ccattatgaa gaacttaatg
     5941 aggttttgct tagcggctcg tcagagggtt tagtgtccgc ggcgaaagag gtgatagacg
     6001 ctggtaccat tgaacgaagc agcaaccagt cactggggga cttagtctct gaggtcactg
     6061 gagtcagtgg atttagtttt ggcaacaccg tgattaaacc ctcaatacat ggactacaca
     6121 gcagtcgcgt aaccattatg aataatgggg tgcgcatgga ggaccaagaa tggggtgcgg
     6181 aacacgcccc aaacgtggat gttaatctag cacattccat tgaaatcatt aagaacgcct
     6241 ctgccctcca atacagtggc gatgccattg gcggttttgt cattttaaaa cctcaacgta
     6301 tccccattaa agatacactt tatggaaaag caaggttgtc tgctcaagat aatggtcgcg
     6361 gaggatctgc acatgtcggt ttaataaaaa gtaccgcgat gggttggtac ggctctgtag
     6421 aaggtacctt taaaaaatat ggggacttta atgccccaga atatagcttg agcaatacag
     6481 gaatgaactc ctatgcctta gccggtaaac tgggatttaa tgagtttaaa cgcggatttg
     6541 aattgagtta caatcgcctc gagaatacgg tgggcattct tcgtgcgtcg catttaggag
     6601 gagcacaaga tcaattcgtc gccataaata gccctgagcc attgatcatt aatgatttta
     6661 cctataatat tgatcggccc aaacaagaag taagtcatca aattatgtcg gccaaggcct
     6721 ttgtaaaatc ggataagttt ggacgaatcg atctacgcta tgattttcag aaaaatgacc
     6781 gattagagta tgacgttcgt cggggcagtg atcagaataa ggnnnnnnnn nnnnnnnnnn
     6841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncagt
     6961 gatcagaata aggcctcttt agatttggac cttcaaaccc atgctgtttc tttggattta
     7021 gcgccaaaat tagtgggatt taattcttta aaaacgggat tttcaggacg atacctaaag
     7081 aataagtcaa atcccaatac tggcgtaaag cgtttgatcc ctgattataa gcgctatgat
     7141 cttggctttt atgccctggc cacgaaatcg ctcaataatg atttggtagt ggatgctgct
     7201 gtgcgcctgg attatatgcg tattgaatct tttaagtatt attactcggc gctttggact
     7261 cagagaggtt acgacacaac ttttgccgcg tttgaggtag aggatttggg gacgcagatc
     7321 ttgacggcac caaaatttaa ttatttaaat ccgtcggcat ccctagggac aagttgggcc
     7381 ttaaacgagc aaaatcgcct ttcaatgaat ctatctcttg gtgctagaaa ccccaatcct
     7441 tcggaattat tttcggaggg cttacatcat tcggcatcaa ggattgaaat cggtgatctg
     7501 cgctttaaac cagaaatcgc taaaaatcta tcgcttggtt ataggtatca aaacacgaaa
     7561 ttaaacttta gtgtaaatcc gtttgtgcgc cttattgatc gctttatttt gattgaaccg
     7621 acggggattc agcaaaccat acgcggaaat tttcaagttt ggtcttacag gcaaactgat
     7681 gtttcccttt ctggtctgga tatggatacc cagtatgcat ttacgaacaa attcggattt
     7741 cagcaacaat tttcactagt caaaggctat gaacttgaga cgaaaactcc gcttatcaat
     7801 atgcctggag ttaatatgat caatgcgcta aactatacct ataagcaaat tgaaatgcgt
     7861 attgaaagcg attacacttg gcgccaaaat gaatttcctg atacgaattn nnnnnnnnnn
     7921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna acctttggcg ggccgcttaa
     8041 tttttcggaa aaattcaatt tctcgtggac tttggacatt caaaatgtat ttaacaccgc
     8101 ctatcgtaat tacctcaacg gcatgcgttt ctatgccgat gaattgggac gaaatgtcct
     8161 tatatctcta acatcaactt tttaaaaact aaaacatgaa taattctaaa aatcaaaaca
     8221 caacaaattc taaattttta aattttacca ctatgaaaaa ctatgcactt tattcgttta
     8281 ttttattgac aggacttctg ttcaccgcat gttctgatga cgacaccccg ccagcccaag
     8341 ttgacgagga agaagtaatt accacactta tggtcacctt aacctcaaac acgggacaaa
     8401 ccattacgtt aaacagtcaa gatttagatg gcgatggtcc taatgaccct acgatttctg
     8461 tttctgcacc tttgtcggta gcgaccacct attctggggt cattgaacta ttcaatgaaa
     8521 cagtgagccc tgcggagccc gtacacgaag aggtagctga ggagagtgca gagcaccaat
     8581 tcttttacac tcaaggagga aatataaatg taacgactaa ttatgaagat tttgacggca
     8641 acgggaatcc tttgggatta tcattttctt tatccacgac ctctgcgggt caaggcacaa
     8701 tgacatttac cttacgtcac gaaccgttaa agccaaatga tgggacttta tcaggcgctg
     8761 gtggtgaaac ggacctctct gtaaccttcc caattactat tgagtaattc gtattccagg
     8821 gaccataccg ctcgatagat taagtttcga gtatttgatc attttttggt caaatactct
     8881 tcttttttat cgagttttgg tttaataaca aactgacaat agggctggtt cggattattt
     8941 ttatagtatt cttgatgttc aacctccgct ggataaaacg cgtcaaatgg ggcgacctca
     9001 gtgacaattg gactgggata gacgctattt tgttccaatg ctaagatata cgcaccgact
     9061 gttgattttt gatcctcagt ggtataaaat atcgcactgc gataatgtgt gccgacatcg
     9121 tgtccttgac gattgagtgt agtgggatca tgtgttttaa aaaataaatc aagaataacc
     9181 tccagagaca gttccttggg atcataggtt aattcaatac actctgcatg acccgtacgc
     9241 ccctgacaga cttcacgata agcgggattc tttatcgcgc ctccgctaaa tccagagaca
     9301 atagaaatca ccccacgaac gcccgtaaag accgcttcgg tacaccaaaa acaacctccg
     9361 gctaatataa ttttttccat agcaatactt tttgaatagc ccggtaaata taaggaccgc
     9421 aagccaatcc ccaaaacaaa ttaaaaccac cgcttgannn nnnnnnnnnn nnnnnnnnnn
     9481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9541 nnnnnnnncc accgcttgag acttggttgc cttaatttaa tactgtattt ttcacgttca
     9601 aatgggcata atggttcaag ccaaaaacat taccaagcac tacggtcaac ttcaagtact
     9661 caaaggagtt gacctcactg tggaaaaagg tgaaattgtt tctatagtcg gggcctccgg
     9721 agcaggaaaa acgaccttat tacagatcct tggtacctta gatcgaatgg accaaggcag
     9781 cctgagtatt aacggcatca acccttttga tttaaatgca aaagccctag cccaatttcg
     9841 caacgaatcc cttggattta tctttcaatt tcatcagctt ttaccggagt ttagtgctgt
     9901 cgaaaatgtc tgctttccag cgctgattca aaatcaaagc atgagtaaag cgaaaattag
     9961 agcaaaagaa ctcctggatt acctgagtct cagccatcgt tttgatcata agcctggggc
    10021 gctctctggc ggagaacagc agagagtggc cgtagcacga gccctgatga atcaaccggc
    10081 actgatcttg gccgatgagc caagcggaaa tctcgacacc caaaatgcac aagaattgca
    10141 tcaactcttc tttgatttga gaaaagcctt caatcaaacc tttattatcg taacccataa
    10201 cagtgattta gcacaaatgg cagatcgtca gttggtcatg gaaaacggta atttcaaacc
    10261 ttaattatgc gccccaaagc cataaaagac ttgctcgagc gaaaactgga gctctattac
    10321 aatgatggat ttatcgctga tgaccctctt caaatacccc atcagttcag tcacaaggag
    10381 gatatacaaa tagcagcact actcacggca acaatcgcat ggggtcaaag aaaaacgatc
    10441 attaaaaatg ctcgggaaat gatggcgctg atggatgacg ccccttttga ttttatccta
    10501 aatcatgaac aaagggactt aaacctcatg aaccattttg ttcaccggac ctttaacagt
    10561 tccgatctca tattttttgt ttctggcttg aagcacattt acagcgacct tggtggcctt
    10621 gaatctgtat ttaaggcgcc caattcagcg ccgtatttac atcaatcaat ccataatttt
    10681 cgtcaatgca tgtttgaggt cccccatcaa aaacgaagtg agaaacacat tagtgacccc
    10741 ttaaataaat ctgctgctaa gcgattgcac atgtttttaa gatggatggt acgcccgtgt
    10801 aaacgcgggg ttgattttgg cctttggacc tcaattaagc ctagtcaact ctcttgcccc
    10861 ttagatgttc atacgggtaa tgttgcgcgt tctttgggtt taatcacccg aaagcaaaat
    10921 gatattttgg ctttacacca gctcgatcag gcacttcgaa gctttgatcc tgtagaccca
    10981 gtgaaatatg attttgccct ttttggcctc ggcctaaatc atgattttgt ttaaaatatt
    11041 gaatttcatc gaataatttt acatttaatc gtttaaatat tagtatttta tttatctttg
    11101 acggtataaa accccaaatt tgattaaccc ttagaagaca actcatgaaa aacttattac
    11161 tttcccttag ccttattact ttttggagct gtagtcaaga gcccatgaat ttagagaaac
    11221 agacactgta agaacgacgc agtggaaaca attacggaat cgtgcatgtc gccgatttat
    11281 acgccggcca aaatatttta attggcagct tagaagtggc caattatgat gatcaagtct
    11341 atgtgactta taaaactaat ggaaattggt ccttaaagaa aacacatcta tttgttggcg
    11401 atttttctga ttttccaatg aatagtggag gaaacccaca agtaggtcgt tttccctata
    11461 agagaacaca tcccaatggc acacaagagt ttaccgtagt aggacctgat gtttactcgt
    11521 caagctgtta ctttcatgct gcccatgctg aagtggtcaa tggcaacggt caaagtgaaa
    11581 gcgcttgggc cgatggcgac cccttgggcg gaaatagttg ggccatggga tttaatcagt
    11641 gctattagat tccgaaatat taacataatt attcgcttaa aaaagacatc tcttcaggtg
    11701 tcttttttat ttaatgtata tttgcgcaat tattgagtca atgacatttc tcaggccgga
    11761 aatacttacc gctctaattc ttcttaccct ccctatcatt gttcatcttt ttgaattcag
    11821 gatattcaaa ccaactgtat tctctaatct attatttctt gagcatctta agcacgagca
    11881 acatcgctat caaaaattaa aaaggtggtt gattttactg cttagactgg gttattttac
    11941 tgggattatc atggcttttg ccttacccac gattcctgag caaagcaaca ccctccaaga
    12001 cgctccggct tatctcttat acctagataa ctcatttagc acgaccgcca aaggcttctc
    12061 aggttcttcc ttactctctg aagccaaaga agagttgtac caatggagta aatcactcga
    12121 tggaaatcaa atcaactggt ttaccaatga cgcacaatat ccaaatcaat cgataaagga
    12181 ttttcaacaa acaattttat ccttaagcgc aagtccacgc caacactcgc ctgagcaagt
    12241 gaccctaaat gcacaacgca tgtttgcgca aatgggggcg tcaaaccgac acttgatttg
    12301 gtataccgat catcaaaatt ggtctgtccc gtctaatttg gatggtattg agctgaccct
    12361 acgctcttta atcgccactg atcgaacaaa tatttgcctt gagaaggccg ctattgatcg
    12421 ctctgatcca gataaaacgc gcttgagtgt tttgctgagt aataacctca atgaagagca
    12481 gtccataacc attcgtgttt ataaagaaga caagctattc acacaaacgg gcacgaaatt
    12541 atctcctggc caagacaaaa cagttgattt cgatttggga gccctcaata aattcaaagg
    12601 catggtcacc attgaggatc gcggcttagg ttatgatgac actttatatt ttaatgtacc
    12661 accgcaaccc aaggtgaaag tcttgagtat tggtcaaaag tctcatgctg tactgcgcag
    12721 tatttttgat gaaaaagact tttcttacaa ccaaagagac ttaagcactt tggacttctc
    12781 tttaattagg gaacaaaatt taataatact cgatcaactc ccctctataa ataacgcatt
    12841 gattggggcc ctaaaagaac acctgttaaa cagtggtggg ctcgtgatta ttcctgagat
    12901 ggcgaccatg gaaacggccc aacaaatatt aagtgaattt agattaggac gcatctcatc
    12961 cttgaatcag caatccagaa cggtcattga gattaatgca aacgatcctt tttacaaagg
    13021 catatttgag caaaatgtgg cggattttca gtatccaacc gtcggtcaaa gttataatgt
    13081 caatacacag gccaggacat tgctctcttt tgatcaagga accccttnnn nnnnnnnnnn
    13141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncg gtccagggac
    13261 aaattttgat caatctccat tgagtgtggt taccttaatt caattggcgc gccagaccca
    13321 aattttccca gaactctact atcctacctt tagtgagcgc tctattgaaa atcaaacgaa
    13381 taactcttcc aagcaatcag tattagcagg atctttggtc gctgatcaag tggtcatttt
    13441 aacgcaaaca agcgagcaaa ttattccgcg acaacaacag attcaggaga atatagtcat
    13501 tgattttgaa ggcattgact ttaattcagg ccattactca gcacgacttg atgaaaatga
    13561 aatcggttgc tttagcttta atcatccgag aaatgagagt catgatcgtt ttaacctacc
    13621 agaattaggg acaacacaaa taaagacaac taaaaatatg gataatgcca tggccatgat
    13681 cactcaaaac cttgaaggca aacaactatg ggtttggttt gctatttttg cattgatttg
    13741 ctttatggcc gaaatgttca ttttaaaaca aaccacatga gaacacttct taaatcggtt
    13801 acaataattg atcctcaggg gcctttccac aaacaagtgg tggatatttt aattgatcag
    13861 ggaatcatag aaaacatggc tccatcgatc agtgatgacc gtgccgatct ggtagacctt
    13921 cccaatgccc atgtgtcttt tggatggttt gacccatcag tttctttggg agaacctggg
    13981 tttgaagaaa gggaaaccat tattaacggg agcctcgtgg ctgcaaaagc ggggtacaca
    14041 gcgatcgcag tacaacccaa taccaatcca gtgacccaaa gtcaggcggc cgttagtttt
    14101 ataaaggcca aagaagattt agtgagcctc ttccctattg gggcgttaac catagacact
    14161 caaggccatg atttgtgtga actctatgac atgcataatg ccggtgctct tgcctttggc
    14221 gactataaaa aacccataaa agaccccaat attttaaaac tcgccttgga gtatacccag
    14281 tcgttctctg gcttaatctg ctccttcccc atggacgcct cactgggcat tagcggaatg
    14341 attaatgaga gcactcaaag tgttcaactc gggcttaaag ggattccaaa actatcggaa
    14401 cacctgcaaa taaaacgaga tttaagtatc ctaaaatatt ctggtgggcg attacacatt
    14461 cctactatat ctacggcaga atctgttggg cttattcgtg aagccaaaaa acaagggtta
    14521 aatgtaagtt gtagtgttgc gatttataat ttgtccttga ccgatcaggt ccttgagact
    14581 tttgattcaa attacaaact catgccgccg ttaagagagc acgaagatca gaaagcttta
    14641 ctcgatgggc ttttagatgg gaccattgat ggtataacga gtgatcataa tcccgttgat
    14701 atagaacaca aaaatgtgga gtttgaccag gccatgtttg ggagtgttgg cctggaacaa
    14761 acatttggcg tgttggcccg aataaccaac aatattgagg atacggttaa ggcactcacg
    14821 ggattgcgcc agtgttttgg tttagaaata gcatcaatcg ccccaggagg taaggcaaat
    14881 ttgaccatat tcaccccaga aggcgcgaat gaagtccaaa tccaacagct cagttcaaag
    14941 tctaaaaatg cggcacttat cggttgtccc accaaaggaa gggtttttgg tgtcattaac
    15001 ggaaataaac agttttggaa tgagcagtag tcaaggttcc gggcctaaat tccataaggt
    15061 tatcccttat ttaacgttta tcggtctgct tatcgcctat cagttaaaca aagattacaa
    15121 agacccagaa acgagctggc atataaaaaa tatgtttggt ttattgctcg ggctttttgc
    15181 tgctgtttgg ctccaaaact accctattgg cttttatgtt tattggacag tgttttgctt
    15241 ttggatctac gccttgttaa tggcactgct caatcaaaaa cgcggcatcc cctatctgag
    15301 caatgctttt cagagatggt ttaaattcct cgatcagcaa tgagttcgat tatagggcct
    15361 ttggacttac cgctatcgca tttatatcgt cccagtgcgt tgaaaaataa cgcgcctttg
    15421 ctggtgctcc tgcatggata tggcagcaat atgcacgacc tctttggctt tgcgccctat
    15481 atccatgaaa aattcgcaat agtcgcttta caagccccaa ttcctttagg agggcctagc
    15541 tacgcctggt acaacatata ctttgaccaa cctcaaggca aatggagtga cgcgcaacaa
    15601 ggaaaagaat cggtacaact cgttttagac gttctggacc aaatcacgca gcaaattgat
    15661 gttaatactc tcgaagtcaa cttactcggg tttagtcaag gagcaatatt aagttatgcc
    15721 gcggcgatga gccatggtca tctgagcaaa gtaatttgtt tgagcggata tctaaatgaa
    15781 gaacttttgc ccgataatgc gaggcttaat tcttgtcaag gaagccggtt ttttgcttct
    15841 cacggcgatc aggaccaagt gattcctgta gcatgggcgc gtaaatcaag taggcgttta
    15901 aatgagctcg gatgtgattt ggagtaccat gaatttcccg tggggcatgg cgtgtcaccc
    15961 gacaatttta cggcgttaaa ttctttttta aacggctaat tttttcttga gttcagaggc
    16021 taaaacgtga aaatcagtcg tcagggatac aaaactgaag actccacggt caaatccagt
    16081 tgaccctctt ggtcaaaaaa gtattcaatc catagttcac cccaagcact accatcgctg
    16141 caatcggcaa taacccaacg atgatttaaa aactttattc gattaatcct ccattgtcca
    16201 ttggcattgg caaagggcac caagggattc cctccttttt gaagattata ctcataaatg
    16261 cgctctttta cctgatttgc ggcatcttca ggctctaaac ctatttgttc aaaataagtt
    16321 cgcgccgaat cattggttag taaatcaaaa taaagtaatt ctgaaatctc ctgatttaat
    16381 gcaatcactg tatcctttaa cgctaactgc ttttgctcta aagaattaat cacggcggtc
    16441 tgtcgctcaa aaatagccga ttgattgacg tacataaaga gcaccagtaa aatgctaaag
    16501 aaaaacaaat acatataaat tctcgacttc atcagatttc aattttgagt tgatcataag
    16561 ccaaaaagac accctcgggc aaagcctcag atacctcctt atggaatccc ataagatgac
    16621 taatatgggt caaataggtt tgtttaggtt ttaattcttt aattaaatcc agtgcctcgg
    16681 ttagattcaa gtgcatcgga tggggttcat gtcttaaagc acttaaaacc aatacatcga
    16741 gatgttcaag atgttgtttg gcctttgtgt ctaatgactt aacgtctgtc atataagcaa
    16801 aattgtccac tttaaaccct aaaatgggca aggaaccatg ggtggcctga atgggcatga
    16861 ccgtttttcc acccaatgaa aacggatgat aagcgcttat gatttctggc ctaatgcctg
    16921 gagctccggg atacttatcc tcttgaacga aaatataagg aaacctcgtt ttaatcgcct
    16981 caagcgtacg ggcacatcca aacagcggaa tnncggaatt tcctgttttt gcataaaatt
    17041 aaatggacga acgtcatcta atccagccat atgatcgttg tgctcatgag tcattaaaag
    17101 accatccaga tgagttattt ggccgcgcaa tatttgttgt cgaaaatcag gaccacagtc
    17161 gataacgaat gaataatttt gccactgcaa atgcaccgag acacgcaagc gttgatcttt
    17221 tggatcccga ctcagacaaa cagggtgatt acttccgatt acgggaattc cttgagaagt
    17281 tccagtgccg agaaaggtca ataaaatcgg ggctatcata agcacaaaaa tagcagtatt
    17341 ttttttgtta ggtaggggta attagtacct ttgtaatgta atctcagagt tcaaaactat
    17401 gcccgatctt attcctggcg acaagaagtt tcaaacaatt ccgtcaatca aagacaaggc
    17461 gcttcgcatt aacctcaacg aaaatattta cggaactttc gcagaaattg gcgcaggaca
    17521 agaaactgtg cgtaattttt ttagagccgg gggtgcctca ggcactattg ctaaaaccat
    17581 gtcggcctat gataaggatt ttagtgatgc catttatggt attgaacccg aagggcgtta
    17641 tgttacagag gcgcgactca aaaagatgtt ggcccatgag attcaactca ttgaagaaag
    17701 gatctctagg gacaaacacc cacgcaagat gttttttgcc tatgccaata ctgttgcgac
    17761 tatagatttt gccaaaaaat atctcggtca tggatgggtt ggtattcgtt ttcaaacgga
    17821 cccagatgag gcctatagtg aaatcgtttt gcacattcgt tttaaggaga ctgaagcggt
    17881 gttacagcag caaactttgg gcgttcttgg ggttaacctt atttacgggg ccttttacaa
    17941 gcacgaccaa cccaagaaac ttttacgcta tttgtacgat cacattgatc acgataagat
    18001 tgaaatagac accataaact ttgatggccc aaaatttagt gatgttgaca ataggctcat
    18061 gagtctgcaa ttgcttaaaa atggcatgac tgaagccgtt atttttggcc ctgacggcaa
    18121 taatatcctt cctgcaagaa ttctttacaa gaaaaatgta ttggccttac gcggcagttt
    18181 cagaccggtg actaaagtca atatgnnata tgtttgagcg ctcctatgag atgtttctca
    18241 aagagaataa agttgacgcc aataaatcac ttgtaatttt tgaaattacc ctgtcaaacc
    18301 taaaagcaga aggcgaaatc gatgagcaag attttatgga ccgtgccaag cttttatgtt
    18361 ccttagggca aacggtaatg atttctaact ttcaggaata ctatcgattg gtagaatact
    18421 tctcaaatta taccaaaagc cgcatggcct taactatggg ggtcaataat ttagtcgata
    18481 tttttgacga gaaatactac cgacatctaa gtggtggcat actcgaagct tttggaaaat
    18541 tgtttttcaa agacttaagg gtttacctct atcccatgtt agaccccaat acgggggaac
    18601 tcactaatag taacaccctg aaagttcacc cgagaatgaa agaattgtac aaattcttta
    18661 agtacaacgg aaaagttgtc gacattgaag actacaatcc agagatcctt aatgtctttt
    18721 caagggaagt actaaaaatg atagaaaacg atgatcacgg ttgggaggat atgcttccca
    18781 atggcgtggc aaaacttatc aaagagcaat cgttatttaa ctttaaaagg tctgaggaca
    18841 atttagttgg ctagacttag ccaacgccac tgatcctcaa cctctctaaa ccgcgcacat
    18901 tgtcttattc ttcggataaa atctgtgccg cgtggtcttt ggtttcaact ttatcaataa
    18961 cacgcgagat taacccattt tcatcgatga gaaaggtcac gcggtgaata ccgtcatagg
    19021 tgcgccccat aaactttttt tcaccccaca cgccaaaacc ttggatgact gacttttctg
    19081 tatcggccaa aagaggaaaa ggaaatgcgt atttctcttt aaattttttc tgcttggatg
    19141 cattatccgc acttacccca agaatagcgt agcccccttg ctgcaaagcg ctgtaattat
    19201 ccgttaggtt acaagcctca gcggtacaac cgggggtact tgccgctgga taaaaaaata
    19261 cgattagttt cttgccggca taatcggcta gtgtgcggcg tgtgccatcc tgatccaagg
    19321 cgtcaaatgc aaacgccttg tctcctactt ttaaggtatt catagctttt tctttttttt
    19381 aatttaatgg cattaactta gcgccatcgg ttataaagtt aatcaaaatg actcaatcag
    19441 aaaaagtagc ttttgtcatc caaactttgg aagcgctcta ccctgagacg ccaattccat
    19501 tggatcacaa ggatccctat accttgctca tcgccgtatt attatcagcg caaagcactg
    19561 atgctcgtgt aaacaccata acaccgctac tttttgagaa ggccgataat ccatacgata
    19621 tgctcaaatt atccgttgag caaatcagag agatcataaa acccgtaggt ctttctccca
    19681 tgaaatcaaa aggaatttat ggcctctcca aaattttagt tgaacaatac aatggttcag
    19741 tgccccaatc ttttgaagcc cttgaggcgc tacccgcggt tggtcataaa acggcgagtg
    19801 tggtcatggc tcaagcgttt ggcgtacccg catttcctgt tgatacgcat attcatcgcc
    19861 tcatgtaccg ttggggattg agtactggta aaaacgttgt ccaaaccgag cgcgatgcca
    19921 aaagactgtt tccgcaagat aaatggaacg acttacacct tcaaatcata ttttatggtc
    19981 gtgaatattc cccagcacgc ggttgggatc gagaaaaaga cattatcaca aaaaccatag
    20041 ggcgcgctga atttaggaag accccctagt ttgcgcaaca ataaatcgac taataaaata
    20101 aaaagccccg aaaaatcggg gccctcttgc taattcagca ctaaatcaaa cttttttgac
    20161 ttgtagttta taacacttaa tgcgctggaa taggctaaca aaaatttaat agtttcatct
    20221 ttgggaacta tgtttttatc cacgtgttcc cgacgtggcg ttcgagaata aagttttgcc
    20281 atagatcttg ttgtttgata tgaaaacgac aagagacctg agttattgta ttctaattgg
    20341 ttaaaacaat ctgatgttta tcaataactt ttctcaggtt aatcaaagcg tatctcattc
    20401 tccccaatgc cgtgttgata ctcactcccg tttgctcgct tatttcctta aagctcatgt
    20461 ctttgtaaat gcgcatggtc aagacctctt tttgatcctc gggcagctct tcaatgagtc
    20521 gctgaacatc tttctggact tgatctttga tcatactgcg ctccgcattt aaatccccat
    20581 cgctcaaaac agagaaaata ttgaaatcat cgttactttc gaatttgggc atacggttat
    20641 tgcgtctgaa ataatcaatt acaaggttgt gagcaatgcg catgacccag ggcaagaact
    20701 tgccttcttc gttgtaattc ccctttttaa gggtgttgat tactttgacg aaagtatctt
    20761 gaaaaatatc ctcggttaca tcacgatcgt aaaccttaga ataaataaat cgataaatac
    20821 ggtctttgtg tcttgcgatt aattcgccta gtgcagattc atcgccgttt acataagcgt
    20881 tgactaacaa cgcatcagag tttatactgt acttcataac gcttctttta ataagataaa
    20941 ggccacatac ggggctcttt gttgtcctta agtattaaaa gtagtgttat gcgataagct
    21001 cttatttaga cgattacagt tgtaaatata acaacattta tcttgcatta acaaaaatta
    21061 tttcaagatt ctccggaatt atgtactgag tagccttata atcttggtgg ttaatctcta
    21121 tctttgcccc ttggtttaaa ccgcataaat cgggataaat ttcttcaaaa catgatcaga
    21181 gaagccatta gtattcaagg ggcaaaactc cacaatttaa aaaatataaa tgtggatatt
    21241 ccccgttata aactggtggt gattacagga ctttccggaa gtggaaaatc cagcttagcc
    21301 tttgacaccc tgtatgcaga aggtcaaaga cgttatgtcg agagtttgtc gtcttatgcg
    21361 cgacaatttt tagggcgact cgacaaaccc aaggtcgata atataaaagg aattgctcct
    21421 gccattgcca ttgagcagaa agttaacgca accaatccac gctctactgt gggcacggca
    21481 acagaaattt acgattattt gaaattactt tttgcccgaa tcggccttac ctattccccg
    21541 atttctggat tagaagttaa aagagatcaa gtcagtgatg tggtcgatat tgttaaatcg
    21601 atgccgcagg gcagcaaatt attgttgtta gcccccatac atttagaagc tcaacggtct
    21661 ctgaaagaca aactcggcgt cctagcgcaa cagggttttt ctcgagtact acacaacaat
    21721 gaaaccgtta aaattagtga ggtaacggcc aaaaatacag aggagcttta tctgattgtt
    21781 gaccgggtgg tcaccgccga tgatgaagac tttctaaatc gacttgcgga tgccgtgcaa
    21841 atcgcatttt atgaaggcaa agggagttta gcccttaaag aggtagatcg tgaccaaatg
    21901 catcgattta gcaatcgctt tgagcgtgat ggcatgacct ttttagagcc taacatccat
    21961 ttgtttagtt ttaacaatcc cttcggggct tgcccgaaat gcgagggcta tggggatatt
    22021 atcggaattg atccagagct ggtaatccct aacacgggtc tgagcgtcta tgataacgct
    22081 attttccctt ggagaggcga aagtatgagt tatcacagag atcaactggt caatcgagcc
    22141 tatgaattcg attttccgat ccataaaccc attcatgagc tttcatctca acagtacgaa
    22201 ctgctgtgga cgggcaataa atattttatg gggctcaatg atttctttgg agaactcgaa
    22261 gctaaaaatt ataaaattca aaatcgggtc atgctctcgc gctatcgagg aaaaacaatt
    22321 tgtcccgaat gcaaagggac ccgtctgcgc aatgaggcga gttacgtaaa gattgatggg
    22381 tataatttgc aagatttgat gaaccttccc ttagaggaac ttttacccat tattgatcag
    22441 cttaaactca cagaatatca gcaacaggtg agtaaacgtc tgcttacaga aatcaaaaac
    22501 agattaaact ttttacacga tgtcggttta ggctatttga ccttgaatag aaaaagcaat
    22561 accctctcgg gtggagaatc tcaacggatc aatctggcta cttctttagc gagttcgctg
    22621 gtcggttcaa tgtatatttt ggacgaacca agtatcggtc ttcatccaaa agatacacag
    22681 cgactcattg gcgtccttca aaaacttaga gatttaggca ataccgttat tgtggtcgag
    22741 cacgatgagg acatcatgcg ggccgcagac cacatcatcg acattggtcc tgaagcgggg
    22801 cgtttcggtg gttctgtgat ggctgaaggc cccctaaaag agctattaaa aaaacccggg
    22861 cttaccgcag actacctcag tggtcgattg atgattgaga tccccaaaaa tcgtcgtgtg
    22921 actcaaaaaa agattttgct ccaaggggcg cgtcaacaca acttgaaaaa tgtaacggta
    22981 accattcctt tagggcaaat gaccgcggta acaggggttt caggaagtgg caaaacgaca
    23041 ttggtcaaac gcatactcta tccagccctt caacgacatc taacaggata tggcgataag
    23101 ccaggtgcct ttgatcaact cagcggagac ttatccgctc tgcaccatat tgaatttgta
    23161 gaccaaaatc ccattggaag atcaagtcgc tctaatccag tgacctatat caaggcttat
    23221 gatgatatta gaaagttgta tgcggaccaa aaactaagca ccttaagagg ctataaaacg
    23281 aaacatttta gtttcaacgt ggatggtggg cgctgcgatt tatgcaaagg cgagggcgaa
    23341 gtgaccatag agatgcaatt tatggccgat gtacatttag aatgtgaggc gtgtaaagga
    23401 cagcgtttca aaaaagaaat actggaaata cgtgtcgatg agcgctcg
//
LOCUS       DPUP01000055            2935 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14725,
            whole genome shotgun sequence.
ACCESSION   DPUP01000055 DPUP01000000
VERSION     DPUP01000055.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2935)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2935)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..702)
                     /locus_tag="DHV98_01870"
     CDS             complement(<1..702)
                     /locus_tag="DHV98_01870"
                     /inference="COORDINATES: protein motif:HMM:PF00480.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCK05134.1"
                     /translation="MSNKKQHTLGIDIGGTNIDIGLMAGGVLIQKNSFAVDVFTDRQE
                     LLKQLIESIGSFELNKVRGIGVGVPGIIDPENGFIFDLQNLPMWYKLPLGEILSKEFS
                     LPVKLENDASCFALGHAHYGLGQQSNNFVGLTLGTGLGMGIIINRTLYSGVLAGAGEI
                     GMLPYNNGIVEEFAASAFFLRYYGQSAKDLHTQAQQGMDMALEAFKEYGVHLGNAIKI
                     VMSLLAPERIILGEIG"
     gene            complement(732..1885)
                     /locus_tag="DHV98_01875"
                     /pseudo
     CDS             complement(732..1885)
                     /locus_tag="DHV98_01875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989494.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     assembly_gap    1768..1792
                     /estimated_length=25
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2055..2293
                     /locus_tag="DHV98_01880"
                     /pseudo
     CDS             2055..2293
                     /locus_tag="DHV98_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003435620.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucanase"
     assembly_gap    2294..2609
                     /estimated_length=316
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2610..>2935
                     /locus_tag="DHV98_01885"
     CDS             <2610..>2935
                     /locus_tag="DHV98_01885"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucanase"
                     /protein_id="HCK05135.1"
                     /translation="FHIYRLEWSETRLIFSVDNQVHYIYEPSVQNMETWPFDLNQYIL
                     LNVAVLPDIIATGFTQDAMEIDYVRVYQNNLSTDDRESDSFRIYPNPSSDFIQIKGDV
                     QNRLTYR"
BASE COUNT          876 a          569 c          451 g          698 t
ORIGIN      
        1 tccgatctcc cctagaataa tgcgctcagg agctaacaat gacatgacta ttttaatcgc
       61 atttccaaga tgcaccccat attccttaaa ggcctctaaa gccatatcca taccctgctg
      121 cgcctgagta tgaagatctt ttgcagactg gccataatat cttaaaaaaa acgcactggc
      181 cgcaaactct tcgacaattc cattgttata cggcaacata ccaatttcgc cggcacctgc
      241 caaaactcct gaatagagtg ttcgattgat aataataccc atgccgagtc ctgtgccaag
      301 agtcaggcct acaaaattat tcgattgctg tccaaggcca taatgagcgt gtcccagagc
      361 gaagcaactg gcgtcatttt caagttttac tggtaaggaa aattctttag ataaaatttc
      421 tcctaagggc aatttgtacc acataggaag attttgcaaa tcaaaaataa aaccattctc
      481 tggatcgatt attcctggaa cgccaacacc gataccgcga actttattta gctcaaacga
      541 gccaatggat tcaattaatt gtttcaataa ctcttgtcgg tcggtaaaga catcaaccgc
      601 aaaactattt ttctggatca gtactccacc ggccattaat cctatgtcaa tatttgtgcc
      661 gccaatgtct atgccaagcg tgtgttgctt tttattgctc attctaaaag tcgtctagat
      721 tgaatttccc tctagcgcag ggttttattt cgaattaacg gtttagccca aatccctata
      781 gacataatat agaccaaagg caatataagc acggtcatgg cgaattgtaa actaagccaa
      841 tctcctaaga atccaacgat caagggccaa attgccccac ccgcaatccc cgtgcataaa
      901 attccggata gggcgccgtg atgatgtttt actgaattga gtcctagaga aaaaataatg
      961 gaccacatta ctgatatcga aaaaccaata gcagggaatc cgaccaacgc ccattttgcc
     1021 ggtccataca gggcgctcaa taaaaagatt attgtggcga aactgctcat tagcagtact
     1081 tttttactat cgaaaagctt taaaagcaat aagactatta aagaacctac ggtaagcatg
     1141 gcccagaaat aagaaacagt cgcggaccca atgtaatcat cagtataatg atggtgtgtc
     1201 cttaagtatt cagccatcca attacccaca ccttgttcaa agccaacata ggcaaatatc
     1261 cccaagaaaa acaaataggc ccaacgattc aagagcaatt ccctatatgc cgaaatcgcc
     1321 ccaacttgct cttggtcact tttttcaact ttgggaaatg gaatcatcct gattaccccc
     1381 aaaataacca gagctaacaa ggcgaaaaaa acatacaacg acaaccaagg tagattttct
     1441 ggaatccaac caggaaaaac acttgatata aactgataag tttggtcttt aaccaattcc
     1501 atgtaaagcc atggactcaa aaaagaagcg ccaccaaaca caacttgcgc caaaacagaa
     1561 ttaaaagcaa aatgttcttc acccccagca aatctaagca ttggattaat gatcacctgt
     1621 aaaacggcca tacaaagccc caaaacaaat agcgtcccca aaaaatagag gtatgaagga
     1681 tttaaaacaa aagtcaaaca actgataaca atcacgccaa atgaccccgt caataaactt
     1741 ctactcgaat aacgttctgc gaggaagnnn nnnnnnnnnn nnnnnnnnnn nngaaaatat
     1801 ttgttataaa tgaaataaca aaaaaaacga tcatgactaa aagcacgagt tgtggatagc
     1861 gactttgtga ttgagtttgg gtcatctttt agtagatctt agcctattga ctctaaaaat
     1921 accaaaatat tcccatttat agaatgtatc tttggagcct aattgaaacg taaaacgata
     1981 ttctgccgat gatttctcga tacaatttcc ttttgacatt tttaatgttt agcaaattag
     2041 tctttgctca aactctggtt tggtctgatg aattcgatta cacgggccct attgattcag
     2101 aaaaatggca tcatcaaacg ctattgccta acgggggaag ttggtataac ggtgaaattc
     2161 agcattatac taatcgtata gaaaactcat ttgttagcga tggaacctta aaaattatgg
     2221 ccattcgtga aaattacacc caacaaggcg taaccaaaga gtttacttca gcacgattga
     2281 atagcaaatt tgcnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt ttcatattta tcgactagag tggagcgaaa
     2641 cacgtttgat tttttcagtg gacaatcagg tccattatat ctatgaaccc tcggttcaaa
     2701 acatggaaac atggcccttt gatttaaatc agtatatcct gctgaatgtt gccgtattac
     2761 cggatattat agcgactggt tttacccaag acgcgatgga aatcgattac gttcgtgtct
     2821 atcaaaataa cctaagcact gatgatcgcg aatcagattc atttagaatt tatcctaatc
     2881 ctagttccga ttttattcaa atcaaagggg acgttcaaaa cagactaact tatcg
//
LOCUS       DPUP01000056           16932 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_554,
            whole genome shotgun sequence.
ACCESSION   DPUP01000056 DPUP01000000
VERSION     DPUP01000056.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 16932)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 16932)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16932
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            3..386
                     /locus_tag="DHV98_01890"
     CDS             3..386
                     /locus_tag="DHV98_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05136.1"
                     /translation="MGHEHKLEIFRGLVKFNSNIQKIWGVFIFLCLVTAVEVVLGIVK
                     PEFLVHGRFLTMKYLNWIFIILTLVKAYYITWDFMHMRDEKTGLRRAVVWTFVFLICY
                     LIAILLVEADYIFEIYKNNFIKFNF"
     gene            346..1149
                     /locus_tag="DHV98_01895"
     CDS             346..1149
                     /locus_tag="DHV98_01895"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05137.1"
                     /translation="MRFIKTTLLNSIFKWCRSEYKKKLRPLYGAFFVEYISAKDLWVV
                     FLHQTIIMGWKKYLVLGILFVLPITVYLFFASGVNQFAKLPKLGDQMIVLSAFEDENG
                     AALTTEGKITILGFLGQNALDHKAEVFNLAHKIYKKNYQFEDFQMLFLTTKDQDSSVA
                     SLKQEFAQISDPINFKVGYGDLAEIAQIHNLLNTPYALDANGSSSYVYILDKDSQLRG
                     REESDYQEFGVGYNAANYAIINNEMNDDIKIILAEYRLALKKYKSSRKK"
     gene            1152..1841
                     /locus_tag="DHV98_01900"
     CDS             1152..1841
                     /locus_tag="DHV98_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HCK05138.1"
                     /translation="MKKQNYSYIGITFVILVFGIMFIPKIISRVRGEKIVDMDRHNLE
                     HASIKNVDMATIGPAPKFTLTDQRGDLFSSEDLEGQIYVVEFFFTTCPSICPIMTQNL
                     LQVQSAFADDSGISLVSISINPVYDTPEVLTNYAKKYGITHPNWHLLTGDQDRIYQMA
                     NKGFNLYVGPGAEIDGGFEHSGFFALVDGQGNIRSRYDQYGNPIIYYDGLELKQVSNL
                     INDISVLLKEK"
     gene            1841..2365
                     /locus_tag="DHV98_01905"
     CDS             1841..2365
                     /locus_tag="DHV98_01905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008256126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HCK05139.1"
                     /translation="MKQFLQSRYKFVIWALSVLIPVVVAILFRVRLPEVEPLMFLPPI
                     YAGINAITAVLLVAAVRQIKKGNRARHERLMSTAILCSIAFLVMYVAYHMTSDPTPYG
                     GEGFLRGAYYFILISHIVLSISVIPLVLFTYYYASTEQFAQHRKIAKITFPIWLYVAV
                     TGVIVYLMIAPYYA"
     assembly_gap    2376..2528
                     /estimated_length=153
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2530..2742
                     /locus_tag="DHV98_01910"
     CDS             2530..2742
                     /locus_tag="DHV98_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015362219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05140.1"
                     /translation="MLLIIALVIFSVGFNSLLAQCAMCRAVLESDASGQAARGINNGI
                     VYLMVFPYLLVGAVGYAVYKIRRSKS"
     gene            2802..3509
                     /locus_tag="DHV98_01915"
     CDS             2802..3509
                     /locus_tag="DHV98_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding protein"
                     /protein_id="HCK05141.1"
                     /translation="MIEIDNLHKSYAVGQNQLHVLKGINFSVNSGEMVAIMGSSGSGK
                     STFLNILGMLDEADQGSYILDGTPIKNLNESLAARYRNQFLGFIFQSFNLISYKSALD
                     NVALPLYYQGVKRQERTERAMHYLEKVGLASWAEHLPNELSGGQKQRVAIARALASDP
                     KVLLADEPTGALDSKTSYEVMELIQEINDEGKTILCVTHELDIAHMCRRIVHLKDGLI
                     LKDERVEQVRAKNALNV"
     gene            3502..>4094
                     /locus_tag="DHV98_01920"
     CDS             3502..>4094
                     /locus_tag="DHV98_01920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05142.1"
                     /translation="MFSLERWQEIFETLNKNRLRTFLTALSVASGIFILVILLGVSTG
                     IQNGVQSEFEQDATNRISVWTGVTTKEYKGLNPGRYIQLKNEDFNLISSNYRDYIEYE
                     TPIFSIWGGAVSYKDQSGNYRVEGAYPDQQFIENETMVSGRFINQSDLNQSAKVAVIG
                     NQMKLDLFKEVDPIGEQIDIQGINFIVVGVYSDPGGNR"
     assembly_gap    4095..4223
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4224..4895
                     /locus_tag="DHV98_01925"
     CDS             <4224..4895
                     /locus_tag="DHV98_01925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05143.1"
                     /translation="SDPGGNREENRIFLPLSTAQKVYNAQDKLRSLAYTVKMSDNFEQ
                     AVSLSRAMTERIDSDLRQKFSIAPDDQSAVRVFNTLEEAKKIYGLIDTIRAVFWFIGI
                     GTIIAGIVGVSNIMLIVVKERTKEIGIRKALGALPWSIIGMILQEAIFITAVAGFVGL
                     FLGVGLLELIGPMVDSAFIKYPQVDFTTAMTTVFVLITAGALAGFIPAQRAAHIKPIE
                     ALRDE"
     gene            4895..6154
                     /locus_tag="DHV98_01930"
     CDS             4895..6154
                     /locus_tag="DHV98_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter ATP-binding protein"
                     /protein_id="HCK05144.1"
                     /translation="MLQKERWDEILEALNANRFRTIMTAFGVFWGIFILVILLALTNG
                     LKNGVQADFGDFATNTIFMWTQSTSMPYQGFTKGRYFNFRQSDVALLKEKFPELRFVS
                     PRNQLGGFRGSNNVTRGDKTGAFNIYGDNPEYIKQEPLDVLKGRFLSYSDIQDARKVA
                     VVGTDVIKSLFDIGEEPIGSYIKINGINFMVIGVVKKTSSQGDNQEDANTIYIPFSTF
                     GKAFNYGDIVGWMAITAIDEVPITQIKPEIMKEMRAAHKVHPDDERAIGHFDLAEQFQ
                     KITGLFSILSFVGYFVGALVLMSGVIGISNIMLIVVKERTKEIGIRRALGATPREIRG
                     QVLQESMFLTLISGMAGISFAAGLIWVMNTLLDAAGSVENFANPSVSVGVIFIALTIL
                     VISGLLAGMIPATRATQMKPVDALRMD"
     gene            6190..7344
                     /locus_tag="DHV98_01935"
     CDS             6190..7344
                     /locus_tag="DHV98_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HCK05145.1"
                     /translation="MKRRGTLITLIIIGVLFILGVRYIWLKDQQDPIVYEYDQATIGS
                     VVKKTVATGSIVPKEEVLIKPNISGIIDAIFVEAGQTVVTGDLIAKVRVVPNINSLNS
                     AQNNIKAAKTQVETARLALERQTSIYERQQVLFQKGVISANEFDTARLSFDQATQRYN
                     QEQVNLRAAEQTFDIVKTGSTQGLGAVANTEIRATVSGMVLDVPVKVGNQVIESNNFN
                     DGTTIAILADVNKMIFEGKLDESEVGKIKENLALEITVGAIEDKSFDAVLDYIAPKGI
                     EENGAVQFEIKGSLSKKDTTFIRAGLSANASIILARADSVLTIKESLVQYDRETQQAF
                     VEIETGDQKFERRDLTLGISDGLIVEVLSGISQEDKIKVWNQLKQPDGRP"
     gene            7413..>8717
                     /locus_tag="DHV98_01940"
     CDS             7413..>8717
                     /locus_tag="DHV98_01940"
                     /inference="COORDINATES: protein motif:HMM:PF02321.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK05146.1"
                     /translation="MKRFAIVIALATIMSAGAQTKKWTLQECVEYAMSNNISLKQSVL
                     DQELARLEKADAVGAYLPNLNGSLSNSWNTGLTQNVTTGVLENQTSRNSSYSVTAGIS
                     VFQGLRNLRSLQRAKINTMAAQYGLEKMQDDIALFVANAFLQVLTNKANVAVLEAQNQ
                     VTVGQIERTQELVNAGVLPEGDLLEIQAADATEKQNIVAAQNGVTLSLINLAQLLQIR
                     DYDSFDIVDQGYDILGTEILEKTPQQLVAAAQAYRKEVLIAETNVALAQKDLQIARSA
                     YLPSIGAFFNYNTRESDRFSGITTLVDSDNPVVSTADPIGFVDGSGAAVYGFAPNIIG
                     YQEVAAKPFQEQLYLNDGISYGVQMNIPIFNGNSTRNNVKRSKLNLMRRELLLEQAKM
                     DLESTVYQAFVDAKGALKSYDAAVKAMNSQQLAYQYAQQRYDV"
     assembly_gap    8718..8792
                     /estimated_length=75
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            8837..>9584
                     /locus_tag="DHV98_01945"
     CDS             8837..>9584
                     /locus_tag="DHV98_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HCK05147.1"
                     /translation="MTSKKRLWIVIAIIVLIVILVAGKKFFGKDENQRLVDIEEVIAR
                     DLTQSVAATGKIQPEIEVMLSSEVSGEIIELPISEGDQVQKGDLLVRINPDLIQSALR
                     QAEAGLQNAKAGLAQAEASLRNAQLNYDRNKTLFEKGVISKSEWDRTVADFEMAEATK
                     NSAFFTVESARSNVQQGQDNLNRTSIFAPMSGTISKLAVELGERVVGTAQMAGTEIVR
                     VADLSNMEVEVDVNENDIVKVSIGDTTEVEV"
     assembly_gap    9585..9732
                     /estimated_length=148
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <9733..10280
                     /locus_tag="DHV98_01950"
     CDS             <9733..10280
                     /locus_tag="DHV98_01950"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HCK05148.1"
                     /translation="TTEVEVDAYLKRVFKGVVTEIANSAQSTLSVDQVTNFKVKVRVL
                     PESYQDLMEGKPEHYAPFRPGMTATVDIQTERRNDIIAIPISAVVIKTDTTARKPGAP
                     APKLDLNAERFECVFVMNENTASLRVIKTGIQDDSRIEITSGLALGDQVITGPYNTVT
                     KLLDPGDRVALDTQEKESEEE"
     gene            10290..10955
                     /gene="tsaB"
                     /locus_tag="DHV98_01955"
     CDS             10290..10955
                     /gene="tsaB"
                     /locus_tag="DHV98_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HCK05149.1"
                     /translation="MILCIETATTNCSVAIFNGLDCVALKEDSTSGYSHNEQLHVFIS
                     DVCLQAGINLNQLTAIAVSKGPGSYTGLRIGVSAAKGLCYALSIPLIAIETLSILGQA
                     ASGERTDFIIPMIDARRMEVYSCVLDRNSKPLDSAEAEILSESSYADYLQKGRVTFIG
                     NGVEKWKAVCKHSNAKYLEGVLPSAREMGVLADALYSKKEFVDVAYFEPYYLKDFQTS
                     IKA"
     gene            complement(11030..11710)
                     /locus_tag="DHV98_01960"
     CDS             complement(11030..11710)
                     /locus_tag="DHV98_01960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05150.1"
                     /translation="MNKSIAILIFSLFTTIAWAQPAGLELNFQTVRSGDRFVSDGNTT
                     GSPYYHDQYHKGSIYLNDKLAASNVLLKYNAYRDIFLAVTDLNTPDELAQVVTKAQGM
                     KVLVNNEEFITLPSVNNRYELQYYQVVVRGEKITLLKKNYKLFVEGSRATTSLTRDVP
                     STYSDRGDFYLLSPSGDFTELPSSTKKVLALFPEDKKALSAAVKKYRLNLKKDIDLVR
                     FIGYYNRL"
     gene            complement(11836..12741)
                     /locus_tag="DHV98_01965"
     CDS             complement(11836..12741)
                     /locus_tag="DHV98_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008868311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05151.1"
                     /translation="MSLNYKITPKPTTNEKIYKFEANAFLVQNTSYEFHNIDQAKPSP
                     LAQELFYLPFVKTIFLAQNFVAVQKYDIVAWDMILDQLSMAIEDYLNSGRPLVNTPSP
                     KPQNITVYAESTPNPNTMKFVANRTLVPKRFEFNNSEEAIHAPLAQELFQIHGVSAVF
                     MHQNYISVSKIEAISWTDLIDSLKILIQNFITQGKAVLTDAALQEAPSESGALPTQPL
                     IQRNDQDKEIIALLEEFVTPAVAGDGGYIAFDSFDPKSKTVRVLLQGACSGCPSSTMT
                     LKNGIQSLLMEMTQGRVEHVEAINA"
     gene            12932..>16932
                     /locus_tag="DHV98_01970"
     CDS             12932..>16932
                     /locus_tag="DHV98_01970"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05152.1"
                     /translation="MRIFTPNHLHTLLFLLLFPLAQAFAQGGTCSSIEPFCAGNQALI
                     FANCNSSDPDCNPTAEIGPDYGCLGTEPYPAWFFLQIDEPGNLNFTITQNTSFDVNGN
                     PTGTGLDVDFIAWGPFAQGADLCDYSQLQAQNEIACSYSAAPVESFSINGAQSGEIYV
                     LVITNFNQSAGFIKLEQTNAGQQGAGSTDCSILANDTACDGDVITFDATTTGAVAYDW
                     TYESPAGSGNYVQFVPAETSPTLDVTVTGNYRCEVTLTAALEFQETFNTGVGISCNLN
                     GASTTYTCYTAGVMEDGEYIVTNTSNGLNAGWHQNMVDHTIGDTNGRMLFVNADIPVG
                     EFYRRTISLDPNTDYSLSAWISTVYDTDTGICVPNSVPSNVRFRVENMSGGIIQEIVT
                     GNIANGPDPDWQEYSIAFNTGTNTNVQLVLLNNAPGGCGNDIAIDDISLSQLNNTPEI
                     FFFEAIFLPQPVIETAPDDLFVCNNNGLTLGIFDLTINQPLAIGSQDPAELNVFYFDG
                     AGNPIADPTAHTITGTTETITIRLEELTGLCFAEETFDIIYTTVLAGPVNNFIVCDND
                     GNGSEPINLAAEFDAQVLNGQPAGNFTISYHNSQAEANSGANPLSSPYNASAPFENIF
                     VRFTSTIDPNCSDTNQNFIINITSPPIIAAPPVDLAQCSSDVTVPGIFDLTVNEPIVL
                     GTQDPANIVITYYDVLGSQILFPGAYTITGVSETITIRLDDILGDCFVEAIFEITYTQ
                     ALSGEVEDYNLCDLDGSGDEPINLPVTFNTQVLNGQPLGDYFITYHGSQLDADLSQNA
                     LPNPYTVTGPSEQIFVRLENRDDPTCFDTAENFTIFLIPPPVPGAIDTYVVCDADNDG
                     FAEFDLSELVVDLQGGNGDLLITFHGTQLDAQNGVLPLISPYPNDDIYNDSVWARVES
                     SLTGCYTAVEVFLEVRDYPIATQPEEPLRECDDALADGFTVFDLTVVESEVLGTLDPL
                     EYDIYYYELESDAIAAGDLALTAPDFSQAIANPGAYQNITNPQTIYILVVGNAGSTSP
                     NNGTAGCYDIVTLELIVDPLPLDLGPFELFLCDDQASGSTIDEVSIFDLTQINDTATG
                     GDSSITVTWYATPGDEAADTPIATPEAYANTVTPQTIVGRLESAFGCRTLVTMTLTVL
                     PNPTPVTPTPLEVCDDDLDGGSFDDGFATFVLTDKDAEITDGEPDVSVTYYETLAQAE
                     AGTPALTSPWVNTIPGGQVIYARVERDVPPGILGCFSIVALELIVVPLPDAPTADFID
                     PMFVCDDDGDGLAEFDLTLNDPFVLGTQDPIDFAPITYHESLAAAQTGTPFIATPEAY
                     LSGGGTVWVRLESL"
BASE COUNT         4594 a         3222 c         3864 g         4747 t
ORIGIN      
        1 ccatgggaca cgaacataaa ttagagattt ttagaggttt agtgaagttc aattcgaaca
       61 tccaaaagat ttggggtgtt tttattttcc tttgcttggt taccgctgtt gaggtagtac
      121 tcggaattgt gaagccagag tttttagtgc atggtcgctt tttaaccatg aaatatttga
      181 actggatctt cattatttta acgctcgtta aagcctatta tattacatgg gacttcatgc
      241 acatgcgcga tgagaaaact ggattgcgtc gtgcagtggt ttggactttc gtattcttga
      301 tttgttattt aatcgctatt ttattggttg aggcagacta tatttttgag atttataaaa
      361 acaactttat taaattcaat ttttaagtgg tgtcgctctg aatacaagaa aaaattaagg
      421 cccctatatg gggccttttt tgttgaatat atttctgcaa aagacctttg ggttgtattt
      481 ttgcatcaaa caataattat gggctggaag aagtatttag ttcttgggat cttattcgtt
      541 ttgcccatta cggtgtattt gttttttgcc agtggggtca atcaatttgc aaaactcccc
      601 aagttgggag atcaaatgat cgtgctgagt gcctttgaag atgaaaacgg agcggcgcta
      661 actactgaag ggaaaattac aattttagga tttttggggc agaatgccct cgatcacaag
      721 gcagaagtat ttaacctggc ccacaaaatc tataaaaaga attatcagtt cgaggatttt
      781 caaatgttat ttctgaccac caaagatcag gattcttctg tggcctcctt aaagcaagaa
      841 tttgcacaga tttcagatcc gataaatttt aaagtgggct atggggattt ggccgagata
      901 gcacaaatcc ataatctttt aaacacgccc tatgctttag acgccaacgg atcttcgtcc
      961 tatgtttata tcctggacaa ggatagccaa ctcagaggtc gagaagaaag cgattatcaa
     1021 gaattcggtg tgggctataa cgcagcaaat tatgccatca tcaataatga gatgaatgat
     1081 gatatcaaga ttattctggc tgaatatcga ctggcgctta agaaatacaa atcgtctcga
     1141 aaaaaataaa catgaaaaag caaaactatt cttatatcgg gataacgttt gtgattttgg
     1201 tttttgggat tatgtttatc ccaaagataa tttcacgggt cagaggtgag aaaattgtcg
     1261 atatggaccg gcataattta gaacatgcat cgattaaaaa tgttgatatg gccaccattg
     1321 gtccagcgcc gaaattcaca ctcaccgacc aaagagggga tttattttca agtgaagatc
     1381 tagagggtca aatctatgtt gtggagtttt ttttcactac ctgtccgtct atttgtccta
     1441 taatgacgca aaatttgctc caagtgcagt ctgcctttgc tgatgattca ggaatcagtc
     1501 ttgtctctat ttcgattaat cctgtatatg atactcctga agtacttacc aattatgcaa
     1561 aaaaatatgg gataacacat ccaaattggc atttacttac tggggatcaa gacaggattt
     1621 accaaatggc gaataaaggt tttaatcttt atgtgggccc tggcgccgaa attgatgggg
     1681 gttttgagca ctcaggtttt tttgcgttag tcgatggtca aggaaatatt cgatcgcgct
     1741 atgatcaata tggaaacccg ataatttatt acgacggttt agagctcaag caagtttcca
     1801 atttaattaa cgatattagc gtgcttctaa aggaaaaatg atgaaacagt ttttacaatc
     1861 ccgatataaa tttgtgattt gggccctatc ggtacttatc cctgtagttg ttgccatatt
     1921 atttcgcgtt cgccttccag aggtcgagcc acttatgttt ttacccccga tttatgcggg
     1981 cattaatgcc attaccgcgg tgcttttggt agcggctgta cggcaaatta aaaaagggaa
     2041 tcgggcaagg cacgagcgat taatgtctac tgccatattg tgttccattg cttttttggt
     2101 gatgtatgtc gcgtatcaca tgacctctga tcctaccccg tacggtggcg aagggtttct
     2161 gagaggggct tattatttta tcctgatcag tcatatcgtt ttgtccatat cggtcatccc
     2221 cttagtgctt ttcacttatt attatgcgag tacggagcaa tttgcgcagc atagaaaaat
     2281 cgctaaaatc acttttccta tatggcttta cgtggcggta acaggggtca ttgtttattt
     2341 gatgattgcg ccgtactatg cctaggggag ccacgnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnntc tgcttttaat cattgccttg gttatttttt cggtggggtt taattcgctc
     2581 ttggcccaat gtgcgatgtg tcgtgcggtt ttagagagtg atgcctcagg tcaagcggcc
     2641 aggggaatca ataacggcat cgtttacctt atggtttttc cttatttatt ggtcggtgct
     2701 gtcggttatg ccgtctataa aataaggcgc tcaaagtctt aacaaagatt tcacacaatt
     2761 atcgcgccta ggggcttatt tttggtgctt tagaagagat aatgattgaa atcgacaacc
     2821 tgcataaatc ctacgccgta gggcaaaatc aacttcacgt tcttaagggc ataaattttt
     2881 cggtaaattc tggggagatg gtggcgatta tggggtcttc cggctctgga aaatcgactt
     2941 ttctcaatat tcttggcatg ctagacgagg cagaccaagg aagttatatt ttggatggta
     3001 cgccaatcaa aaacttaaat gagtcgctag cggctcgtta tcgcaatcaa tttttggggt
     3061 ttatttttca gtcctttaat cttatatcct ataagtctgc tctggacaac gttgctttgc
     3121 cgctttacta tcagggggtg aaacgtcaag agcgcactga gcgcgccatg cattatttag
     3181 aaaaggttgg cttggccagc tgggcagaac acctgcccaa tgagctttct ggaggacaaa
     3241 aacaacgtgt ggccattgct cgtgccttgg cgagtgaccc taaggttctt ttggccgatg
     3301 aacccacagg agccttagac tcaaaaacct catatgaggt catggaactg attcaagaaa
     3361 ttaacgatga aggcaaaact attttgtgtg tgacccacga actcgatatc gctcatatgt
     3421 gccgccgaat cgttcactta aaggatgggt tgatactcaa agacgaacgg gtggagcaag
     3481 tccgcgcaaa aaatgctttg aatgtttagt ttagagcgtt ggcaagaaat ttttgaaacc
     3541 ctaaacaaga acagattgcg cacttttctt accgcgttgt ctgtagcttc agggatcttt
     3601 attttggtga ttctactcgg ggtgagtacg gggattcaaa atggggttca atctgagttt
     3661 gaacaagatg cgaccaatag aatttcggtt tggaccgggg tcacgactaa ggagtataaa
     3721 gggcttaatc ccgggcgata catccaactc aaaaatgaag attttaattt gatttcttca
     3781 aactaccgag actatataga atacgaaacc ccaatttttt ctatttgggg cggcgccgtt
     3841 agctacaaag accaaagcgg taattaccgt gtagaaggcg cttatcccga tcagcagttt
     3901 atcgaaaacg aaactatggt ttcgggtcga tttattaatc aaagtgattt aaatcagtcg
     3961 gcaaaggtgg ctgtgatcgg caatcaaatg aaattagatc tttttaaaga ggttgatccg
     4021 atcggggaac aaattgatat tcaaggcatc aattttattg tggttggggt ttatagtgat
     4081 ccgggaggca atcgnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnagtgatc cgggaggcaa tcgagaagag aatcgcattt
     4261 ttttgccgtt aagcacagcc caaaaagttt ataatgcgca agataaatta cgctctctgg
     4321 cttatacagt aaaaatgagc gataattttg aacaagcggt atccctttct cgcgcgatga
     4381 ccgaaaggat cgatagcgat ttgcgtcaga agttcagtat tgcaccagat gaccaatctg
     4441 ccgttcgcgt gtttaataca ttggaggagg caaaaaaaat atatggatta attgatacca
     4501 tcagggccgt tttttggttc atcggtattg gaactattat tgcaggaatt gttggggtaa
     4561 gcaatattat gctcattgtg gttaaggagc gaacaaaaga gattggtatc agaaaagccc
     4621 ttggggcttt gccatggtcc attatcggaa tgattcttca agaagccata tttattaccg
     4681 cagtggcggg ttttgtcggt ctttttctag gtgtgggtct gcttgagctg attgggccga
     4741 tggttgattc tgcctttatt aagtatccac aagtggactt taccacagcc atgaccacag
     4801 tatttgtgct cattacggca ggagctttgg cgggatttat tcctgcacag agagcggcac
     4861 atataaaacc tattgaggcc ttaagagacg aataatgcta caaaaagaac gctgggacga
     4921 aatactcgag gcacttaatg ccaaccgctt tagaaccatc atgactgctt ttggtgtctt
     4981 ttgggggatt tttattttgg ttatattact cgcgctcacg aatggtttaa aaaatggcgt
     5041 tcaggcggat tttggagact ttgccacgaa tacgattttt atgtggactc aaagcacctc
     5101 tatgccttat cagggcttta ccaaaggacg ttattttaac tttagacagt ctgatgtggc
     5161 cttactcaaa gaaaaatttc ctgaattgcg ttttgtttca ccgcgcaatc aattgggggg
     5221 ttttcggggg tcaaacaacg taacgcgtgg agataaaact ggggccttca acatttatgg
     5281 ggacaatcca gaatacatca aacaagaacc tttagatgtt ttaaaagggc gctttttgtc
     5341 ttactccgat attcaagatg cgcgaaaagt ggctgtagtt ggcaccgatg tgatcaagag
     5401 cctatttgat attggagaag aacccattgg gtcgtatata aaaatcaatg ggataaattt
     5461 tatggttatt ggtgtggtta aaaaaacctc aagtcaaggc gataaccaag aagacgccaa
     5521 caccatttat attccatttt caacttttgg gaaggcattt aattatgggg atattgtagg
     5581 ctggatggcc attaccgcta ttgatgaagt gcctattacc caaattaagc cagaaatcat
     5641 gaaggaaatg cgcgcagcgc acaaggtcca tccggatgat gagcgggcca ttggacattt
     5701 tgatttggca gagcaatttc aaaagattac cggtttattc tcaattttaa gctttgtcgg
     5761 ctatttcgtt ggcgcattag tattgatgtc cggggtcatc ggaattagta atattatgct
     5821 gatcgtggtt aaagaacgca ccaaagaaat cgggataaga cgcgctctcg gggctacgcc
     5881 aagagagatc cgaggccaag tgttgcaaga atcgatgttt ttgaccctta tttcgggtat
     5941 ggcaggcatt agttttgccg ccggattaat ttgggtcatg aatacacttt tggatgccgc
     6001 gggctctgta gaaaattttg caaatccgtc ggtgagtgtc ggggttattt ttattgcgtt
     6061 aaccattttg gtcatctctg gattactggc cggaatgatt cccgccacgc gtgccactca
     6121 aatgaaaccc gtcgatgcct tgcgcatgga ctaacaaaac atgaataaaa agtattaata
     6181 caaccaacaa tgaaaagaag aggaacttta atcacgttaa ttattatcgg tgtcttattt
     6241 atcctagggg tacgctatat ctggctcaag gatcaacaag accccattgt ttatgagtac
     6301 gatcaggcga ccataggttc tgtcgttaaa aagactgtgg ctacaggaag tattgttcct
     6361 aaagaagagg tgcttatcaa gcccaatatt tctggaatta ttgacgccat ttttgtggaa
     6421 gcaggccaaa cggtggtcac gggcgattta attgcaaaag tccgcgtcgt cccgaacatt
     6481 aattccctaa acagcgcaca aaacaacatt aaggcggcca agactcaagt agagacggcc
     6541 cgattggctt tagaacgtca aaccagtata tacgaacgtc aacaggtatt gtttcaaaaa
     6601 ggagtcatct cggcaaacga atttgatacc gcgcgattgt cttttgacca ggccacccaa
     6661 cgatacaatc aagaacaagt caatttacgt gcggcagaac agacctttga tattgtcaag
     6721 acgggttcaa cccaaggact tggggctgtg gccaacacag aaattcgcgc aacggtttct
     6781 gggatggttc tcgatgttcc tgttaaggtc ggaaatcaag tcattgagtc aaataatttt
     6841 aatgacggaa cgaccattgc tattttggcg gatgtcaata aaatgatttt tgaagggaaa
     6901 ttagacgaga gtgaggttgg aaagatcaaa gagaacttag ccttagaaat tacagtgggg
     6961 gccattgagg ataagtcttt cgatgccgta ctagactata tcgctcccaa aggcattgag
     7021 gagaacggcg cagtacagtt tgaaataaaa ggaagtttaa gtaaaaaaga cacgacgttt
     7081 attcgcgcag gcctcagtgc taatgcctcg ataatcttag cgcgagccga cagtgtgctc
     7141 accataaaag agtccttagt tcagtatgat cgagaaacac aacaagcctt tgttgaaatt
     7201 gaaaccggtg atcagaaatt tgagcgtaga gacttaaccc tgggcatcag tgacggttta
     7261 attgtagaag tcttgtcagg aataagtcaa gaagacaaaa taaaagtgtg gaatcaactc
     7321 aaacaacccg acggaagacc ttaagctaag ctgaagaacc ttacctttgt gttgcaatac
     7381 gtataaaaac ccattggggt cgaattaaaa ttatgaaacg atttgctatt gttattgcgt
     7441 tagcgacgat tatgtctgcc ggcgctcaaa cgaaaaaatg gaccttacaa gagtgcgtgg
     7501 aatacgcgat gtccaacaat atttctctga aacaaagtgt tttagatcaa gagcttgctc
     7561 gccttgagaa ggccgatgcc gtaggggcgt atttaccaaa cttaaatggg tccttgtcca
     7621 attcctggaa taccggtctt actcaaaatg taactacggg tgtattggaa aatcaaactt
     7681 ctcgaaactc atcctacagt gtaactgcag gtatttcagt ttttcaaggg ttgcggaatt
     7741 taaggagttt gcagcgcgcc aaaataaata ccatggcggc tcagtatggt ttggagaaaa
     7801 tgcaggatga tattgcctta ttcgtagcca atgcattttt gcaagtcctc accaataaag
     7861 ccaatgtcgc ggtcttagaa gcccagaacc aggttactgt aggtcagata gaacgcaccc
     7921 aagaactggt caatgccggt gttctccctg aaggagattt actagagatt caagcggcag
     7981 atgccactga aaagcagaac attgttgctg cccaaaacgg ggtgactctg tcgctcatca
     8041 atttagctca gttattacag attcgcgatt acgatagttt tgatattgtc gatcaaggct
     8101 atgatatatt gggaacagaa atattggaaa aaaccccgca acagctcgtg gccgctgcgc
     8161 aggcgtaccg caaagaagtg ctcatcgcag aaactaatgt tgccctggct caaaaggact
     8221 tgcagattgc acgcagtgct tatttgccct ctattggtgc attttttaac tataataccc
     8281 gagagtccga tcggtttagt ggcataacga ccctagtcga ttctgataat ccagtggtga
     8341 gcacggctga ccccatcgga tttgttgatg gtagtggtgc ggccgtttac ggatttgcgc
     8401 caaacattat cggttatcaa gaagtagcgg ctaagccgtt tcaagaacag ctttatttga
     8461 atgatgggat ttcctatggg gtgcaaatga acattcccat ctttaacgga aacagtacgc
     8521 gaaataacgt aaagcgaagc aaacttaatc tcatgcgtcg tgaattgctc ttggagcagg
     8581 ccaaaatgga tttagagagc acggtatacc aggcttttgt tgatgccaaa ggcgcgttaa
     8641 aatcttatga tgccgctgtg aaggctatga attctcagca actggcttat caatacgcgc
     8701 aacagcgata tgatgtannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngagttgta ttttggtgtt ccagtttcgg
     8821 aattaaaatt ttaattatga cctcaaaaaa acgcctttgg attgtaatag cgattattgt
     8881 attgattgtc attctggtcg ccgggaagaa gttctttggt aaggacgaga atcaacgact
     8941 tgttgatata gaagaagtga ttgcccgtga ccttacacag agtgtcgcgg cgacaggtaa
     9001 aattcagcca gaaatcgaag ttatgttgtc ttctgaggtt tcaggtgaaa ttattgaatt
     9061 gcctattagt gagggtgatc aggtacaaaa gggggatttg ttggtgcgca ttaatcccga
     9121 tttaattcaa tctgcgctgc gacaggccga ggcgggattg caaaacgcta aagcaggtct
     9181 tgcccaggca gaggcctctt tgcgtaacgc acaattaaat tacgatcgta acaaaaccct
     9241 ctttgaaaaa ggggtgattt ccaaaagtga atgggaccga accgttgccg attttgagat
     9301 ggccgaggcg acgaaaaatt ctgcattttt cactgtagaa agcgctcgtt ctaatgtgca
     9361 acaaggtcaa gataatttaa atcgcacttc gatttttgcg ccgatgtccg gaaccatttc
     9421 caaattagcc gtggagctcg gtgagcgcgt ggtggggaca gcccaaatgg cgggaacgga
     9481 gattgtacgc gtggcggatc tttcgaatat ggaggttgag gttgatgtca atgaaaatga
     9541 tattgtgaag gtctctattg gagacaccac tgaggttgag gtggnnnnnn nnnnnnnnnn
     9601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9721 nnnnnnnnnn nnacaccact gaggttgagg tggatgctta tttgaaacga gtatttaaag
     9781 gtgttgtgac tgaaattgct aattctgccc agtcaacact ttctgtagac caagtgacca
     9841 atttcaaagt taaagttcgg gtcctgccag aatcttatca agaccttatg gaggggaaac
     9901 cagaacacta cgctccattc aggccaggta tgacggctac tgtggatatt caaacagaac
     9961 gtcgtaatga tattatagcc attcctataa gtgcagtggt cattaaaacc gatacgactg
    10021 cccgaaagcc aggagcccct gcgccaaagc ttgatcttaa cgccgaacga tttgagtgtg
    10081 tttttgtcat gaatgaaaat acagcctcgc ttcgcgtgat aaaaaccggt attcaggacg
    10141 atagccgtat tgagattact tcaggcttag ctttgggcga tcaagttatt acaggcccct
    10201 ataatacggt tactaaactt ttagatccgg gagatcgagt agcgctggac actcaggaaa
    10261 aggagtccga agaggaataa atagctcaaa tgatactttg cattgaaacc gcaacgacaa
    10321 attgttctgt cgcaattttt aatggattag actgtgttgc cttaaaagaa gattccacct
    10381 cgggctacag tcataatgaa caactccatg ttttcattag cgatgtttgt cttcaggcgg
    10441 ggattaactt aaaccaactg acggcgatcg ctgtcagtaa aggaccaggg tcctatacag
    10501 gtctgcgcat tggagtttct gcggcaaaag ggctttgtta tgcattatcc attcctttaa
    10561 ttgccataga gacgctaagt atacttgggc aagccgcttc aggggagcgt acagatttta
    10621 taattccaat gattgatgcc cgaaggatgg aggtttattc ttgtgtttta gatcgtaaca
    10681 gtaagccact ggattcggca gaggctgaaa tattaagtga atcgtcttat gccgattatc
    10741 tgcaaaaagg ccgggtgacc tttataggaa atggggttga aaaatggaaa gcagtttgca
    10801 agcattcaaa tgcgaaatac ctagagggcg tgttgcccag tgctcgagaa atgggtgttt
    10861 tggccgatgc gttatactca aaaaaagaat ttgttgatgt tgcctatttc gagccctatt
    10921 atctaaaaga ttttcaaact tccataaaag cttgatttta gatattggcg tgccgaacta
    10981 agtagcctca agcacaagtg attctcagaa aagaaattca gggaatgccc tagagtcggt
    11041 tgtaatatcc gataaatcgg acgaggtcaa tatctttttt caaattgagg cgatactttt
    11101 taacagctgc agacagagcc tttttgtctt ctggaaacaa ggcgagtact tttttggtcg
    11161 aggaggggag ttctgtaaaa tcccccgaag gacttaatag gtagaaatca ccgcggtctg
    11221 aataagtcga gggaacatct cgcgttagac tcgttgtcgc tcgagagcct tcaacaaata
    11281 acttgtaatt tttcttgagt aaggtaattt tttccccgcg gaccaccact tgataatact
    11341 gtaattcata acgattgttc acactgggaa gcgttataaa ttcctcgttg ttcacaagga
    11401 ctttcatgcc ctgtgctttt gtgaccactt gcgctaattc gtctggggta tttaaatcgg
    11461 ttacggccaa gaaaatgtct ctgtaggcgt tgtatttaag caatacattc gatgcagcaa
    11521 gtttgtcgtt taaataaatg gagcctttgt ggtactggtc gtgataataa ggcgaccctg
    11581 tcgtatttcc gtctgataca aatcgatcac cactgcgtac cgtttgaaag ttaagttcta
    11641 gaccagcagg ttgcgcccat gcgatcgtgg taaacagtga aaaaataagg attgcgatag
    11701 atttattcat gtggaaaaat attgaaggcg ctaatataat tagttgaccg aggaacttgt
    11761 gttaaaaaaa acgaaaattt cgttaaatca aaggttgaaa cgcgtaatca aaaccctgag
    11821 tctgtaaagg aatttttagg cattaatcgc ttctacatgc tcaaccctac cttgagtcat
    11881 ttccattaaa agggactgaa tgccattttt taaagtcatg gtggaagagg ggcaaccact
    11941 gcatgcaccc tgtaataaaa cccggaccgt tttggatttt ggatcaaaag aatcaaaggc
    12001 aatatatccg ccatcaccag cgacggcggg ggtcacaaat tcttcaagta gtgcgatgat
    12061 ttctttgtct tgatcattgc gttgaatcag tggctgcgtg ggcaaagctc ctgattctga
    12121 gggcgcttct tggagtgcgg catccgttag aacagccttc ccttgggtta taaaattttg
    12181 aattagtatt ttaagcgaat caattaagtc ggtccaagaa atggcctcga ttttagatac
    12241 agaaatataa ttctgatgca taaagacggc acttactcca tgaatttgaa atagttcttg
    12301 agccaaaggc gcgtggatgg cttcctcaga attattgaac tcaaatcttt ttggaacaag
    12361 tgttctattg gcgacaaact tcattgtatt aggattcggt gtactttctg cgtaaaccgt
    12421 aatattttga ggctttgggc ttggggtatt gaccaaagga cggccactgt tcaggtaatc
    12481 ctctatggcc atagatagct gatctaaaat catatcccaa gccacaatgt catatttttg
    12541 aacagcaaca aaattttgtg ctaaaaaaat cgtttttaca aacggcaagt aaaaaagctc
    12601 ttgtgctaac ggagatggtt tggcctggtc tatgttatga aactcatagg acgtattttg
    12661 aaccaagaag gcgttcgctt caaacttgta aattttctcg tttgtggtgg gttttggggt
    12721 aattttataa ttcaaagaca tggtgcaatt tttctactgt aaaaatagtg attccgtaaa
    12781 aatcaagccc aagaactaaa gtcaattatt tgctaattat tgggtgataa aaaaggagta
    12841 tgaattaagt taaaaaagac cgcttagatg cctgaaaatg gcataaatcg taaaaatttc
    12901 cttatttttc cccctgaata gaagtcctat tatgagaata tttactccta atcatttaca
    12961 tacgctttta tttcttcttt tattccctct agcacaggct tttgcgcagg gaggtacctg
    13021 ttcgagtatc gagccatttt gtgcgggaaa ccaagcctta atttttgcta attgtaatag
    13081 cagcgatcct gattgtaacc caacggctga gattggtcca gattatggtt gtctcgggac
    13141 ggaaccttac ccggcctggt tctttttaca aatagatgag ccggggaatt taaattttac
    13201 cattacccaa aatacaagtt ttgatgtcaa tggtaacccc acaggaacag ggctagatgt
    13261 agattttatc gcatggggtc cttttgccca gggggcagac ctatgcgatt attctcaact
    13321 gcaagcacaa aatgaaatag cctgtagtta ctctgcggcc ccagtagagt ctttcagtat
    13381 aaatggagcg caatcaggcg aaatctacgt tttagtcatt acaaacttta atcaatcggc
    13441 gggtttcatt aagcttgaac aaaccaatgc gggccaacaa ggcgcaggaa gcacggactg
    13501 ttctattctg gccaatgaca ccgcttgtga tggagatgtc atcacgtttg acgcgacgac
    13561 cactggcgca gtcgcttacg actggaccta tgaatctcct gcagggtctg gaaattatgt
    13621 tcaatttgtc cccgctgaga cgagtcctac tttggacgtt acagtgacgg gaaattatcg
    13681 ttgtgaagtc actttgacgg cggcactaga atttcaggag acctttaaca caggcgttgg
    13741 aatctcttgt aacctcaatg gggcaagtac gacctatacc tgctacaccg cgggtgttat
    13801 ggaggatggg gaatatattg taaccaatac ttctaatggt ttgaatgcgg gctggcatca
    13861 gaatatggtg gatcatacga ttggtgacac aaacggccga atgctttttg taaacgcgga
    13921 tatccctgtg ggtgaatttt atcgccgaac aatttcatta gatccaaata ctgattactc
    13981 gctaagtgcc tggatatcga ctgtatacga tacagatact ggaatttgtg tgccaaatag
    14041 tgtgccttct aatgtccgtt tccgtgtgga aaatatgtcc gggggaatca ttcaagaaat
    14101 cgttacagga aatatagcca atgggccaga tccggattgg caagagtact ctattgcatt
    14161 caatacaggg acgaacacca atgtccaatt agtgcttttg aataatgctc caggaggttg
    14221 tggtaacgac attgccattg atgacattag tttgtcacaa ttaaataata cgccagaaat
    14281 tttctttttt gaggccatat ttctccctca gccagtcatt gaaaccgcac cggatgattt
    14341 atttgtctgt aataataacg gacttaccct gggtattttt gatcttacaa taaatcagcc
    14401 actagccatc gggtcacaag atcccgctga gctgaatgta ttttattttg acggcgctgg
    14461 aaatccaata gctgatccaa cggcgcatac cataacgggg accactgaaa ccataaccat
    14521 aagacttgaa gaacttactg gattgtgttt tgctgaagag acttttgata tcatttacac
    14581 gacggttctt gcggggccgg taaataattt tatcgtttgt gataatgatg gtaatggaag
    14641 cgaaccgata aatttagctg ctgaatttga tgctcaggtg ttgaatggtc aacccgctgg
    14701 aaatttcact atttcttacc ataattctca ggctgaggcg aattcaggag ccaacccgct
    14761 cagttctcct tacaatgcat ctgcaccttt tgaaaatata tttgtacggt ttaccagtac
    14821 aattgaccca aattgtagcg atacgaatca aaactttatc atcaacataa catcaccccc
    14881 aatcattgcc gctcctcctg tggatctagc ccaatgttct tcagatgtta ctgttcctgg
    14941 tatttttgac ttaacggtga atgaacctat agtccttggg acacaggatc cagcgaatat
    15001 tgtgattact tattacgatg tgttgggttc tcaaattctt tttccaggag cgtatacgat
    15061 caccggagta tctgaaacga taacgattag attagacgat attttaggcg attgttttgt
    15121 agaagctatt tttgaaatta cctatacgca agcgctctca ggggaggttg aggattataa
    15181 tttatgtgat ttagacggaa gtggtgatga gccgattaat ttgccggtga ccttcaatac
    15241 tcaggtgctc aacggacagc cgctcggaga ttattttatt acctatcacg gcagtcaact
    15301 ggatgcagat ttgagtcaaa acgccctacc gaatccttat acagtaacag gccctagcga
    15361 gcagattttt gttcgtttag aaaacagaga cgatccaacc tgcttcgata ctgcagagaa
    15421 tttcaccata tttttaatcc ctccccccgt tcctggtgct atagacactt acgttgtttg
    15481 cgacgcggac aacgatggat ttgctgagtt tgatttaagc gagttagtgg ttgatttgca
    15541 ggggggcaat ggagatttgc tcattacctt ccacgggact cagttagatg cccaaaacgg
    15601 ggtattgcct ttgattagcc cttatcctaa tgacgacatt tataacgaca gtgtatgggc
    15661 tcgtgtagag agttctttaa cgggttgtta cacagcggtg gaggtctttt tagaggttcg
    15721 ggattatcct attgccaccc agcccgagga gcccttgcgt gagtgcgatg atgcgctagc
    15781 cgatgggttt acggtctttg atttaacggt agtggagtcg gaggttttag gcaccttaga
    15841 tccactggag tatgacattt attactacga gctagagagc gatgcgattg ctgcgggtga
    15901 tttggcttta acggctccgg acttttctca ggccattgcc aaccctgggg cgtatcagaa
    15961 catcaccaac cctcagacga tatatatatt ggttgtgggt aatgcgggga gcacctcgcc
    16021 aaacaacggc accgcgggtt gttatgacat agtaaccctc gagcttattg tagatccatt
    16081 acctctggac ttaggtccct ttgagttgtt cttatgtgat gatcaggcca gtggcagcac
    16141 catagacgag gtgagcatct ttgacttaac ccagatcaac gacacagcca ccggtggtga
    16201 tagtagcatc acggttacat ggtatgccac tccaggggat gaggctgcag atacaccgat
    16261 tgccacgccc gaggcctatg ccaacaccgt taccccacag accatagtag gaagactaga
    16321 gagcgccttt ggttgccgca ccctggtgac tatgacctta acggtcttgc ctaatccaac
    16381 accggttacc ccgacgccac tcgaggtgtg tgatgacgat ttagatgggg gcagttttga
    16441 tgatggcttt gccacgtttg tgcttaccga taaagacgca gagatcaccg atggtgagcc
    16501 tgatgttagt gtgacttact atgagaccct ggctcaggcc gaggcgggca cccctgcttt
    16561 aaccagcccc tgggtcaata cgattcctgg cggccaggtg atttacgccc gcgtagagcg
    16621 cgatgttccc ccggggatac tgggctgctt tagcattgtg gcgttagagc tgattgtggt
    16681 cccactaccg gatgcgccta cggcagattt tatcgatcct atgtttgtgt gtgatgacga
    16741 tggcgatggt ctggctgagt ttgatttgac gctgaacgat ccgtttgtct tgggcacaca
    16801 ggacccgatc gattttgcac cgattaccta ccacgagtcc ttggctgctg cccagacagg
    16861 cacgccattt attgccacgc cagaggctta tctcagcggc ggcggcacgg tgtgggttcg
    16921 attagagagc ct
//
LOCUS       DPUP01000057            3213 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_30948,
            whole genome shotgun sequence.
ACCESSION   DPUP01000057 DPUP01000000
VERSION     DPUP01000057.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3213)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3213)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3213
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            5..1429
                     /locus_tag="DHV98_01975"
     CDS             5..1429
                     /locus_tag="DHV98_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008990205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope biogenesis protein OmpA"
                     /protein_id="HCK05153.1"
                     /translation="MKFQTIILTAALVLSGVFSLNAQDRQNPWAIEIGTNAVDFYPVG
                     YDSGTLFPSIGAGRVHGAFINEYFNFGDHYNFMPSASRVSVGRHLFSGLSLNVAGSIN
                     KIDKLGDVEFNEWFGADSARYYGLDASLNFSFADALDKSWVIDPYLGFGAGRSWIKYG
                     YAYGFYTMNANVGFKFWVLENRLAINVMSTFKSGLDDTYSQDHFQHSAGLVFQFGGKD
                     TDKDGINDDEDQCPMVPGLKEFNGCPDTDGDGIEDAKDECPEVAGSADFNGCPDSDGD
                     GVEDRKDECPKRKGPMELGGCPDRDKDGVADKDDACPTEAGDPNLGGCPDADGDGVAD
                     KDDACPQEGGTVANGGCPEMSIDVIEELNTSTAAILFALGSNELNYEGKAILDEIAQV
                     LKAYPTTSLEIAGHTCNIDTLTFNQGLSEARAKAVRQYLITKQGVSPSRLTAKGYGEN
                     EPIADNATAEGRAKNRRVEIRVNE"
     gene            1563..2258
                     /locus_tag="DHV98_01980"
     CDS             1563..2258
                     /locus_tag="DHV98_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013871425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05154.1"
                     /translation="MTTLNTHRHRPKTIKAILFDMDGVIVDSEPLHHKAYYMMFEEVG
                     IRVSPELYASFTGQATLEICNTLCAHFKLSQHPEELVAIKRRYFKTLFDEDPDFDLIP
                     GVLSLIQDYHKSGLTLVLASSASMENINRIFKRFDLDQYFIAKRSGADLAASKPHPEI
                     FEKAAAASGFGPEQCLVIEDSENGITAAKAAGIYAIAFDSPNSKAQDYTKADLVINSF
                     EEIKYERLKRMFR"
     assembly_gap    2269..2354
                     /estimated_length=86
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2388..2810)
                     /locus_tag="DHV98_01985"
     CDS             complement(2388..2810)
                     /locus_tag="DHV98_01985"
                     /inference="COORDINATES: protein motif:HMM:PF07661.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05155.1"
                     /translation="MNLKQSLLTLALFFIGFAVNAQSTYYHNQLDDLSLQEGSAQLKD
                     SGALVTGRVITNYENGQLRMEGYYLAGKKEGVFRWWYASGQLGSEEYFVNDLKHGICR
                     QWYANGQIKQEAEYQEGQPKGRTKYWDENGAKRKVKKA"
     gene            complement(2881..>3213)
                     /locus_tag="DHV98_01990"
     CDS             complement(2881..>3213)
                     /locus_tag="DHV98_01990"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05156.1"
                     /translation="SFKNIHKKSQVSTQKIKYSEAEKALHKEYAVLRTWRQNTPETPL
                     SSKALLEFWTENKDIYPKEWLMFLELLELMNSLDHPMRHEVRSTLESLRSQKELEQLI
                     SNGLKLLS"
BASE COUNT          852 a          663 c          719 g          893 t
ORIGIN      
        1 agacatgaaa tttcaaacga ttatacttac tgcagcactt gtattatcag gtgttttcag
       61 tctcaatgct caagacagac aaaatccatg ggccattgaa ataggaacta acgctgtgga
      121 tttctatcca gtgggttatg actccggaac gctttttcct tccataggcg caggccgtgt
      181 acacggggcc tttattaatg aatacttcaa ctttggagac cactacaact tcatgccatc
      241 cgcgtcacgc gtttcggtag gccgccattt atttagtgga ttgagtctta atgttgctgg
      301 gtccattaat aaaatcgaca aacttggaga tgttgaattc aatgagtggt tcggtgcgga
      361 ttcagcccgc tactatgggt tagatgcaag tttaaatttc agtttcgctg atgccttgga
      421 taaatcatgg gtcattgatc catatcttgg ttttggtgct gggcgcagct ggataaaata
      481 cggttatgca tatggcttct ataccatgaa tgccaatgtt gggtttaagt tttgggtgtt
      541 agaaaatcgt ttggcgatta atgtcatgag cacctttaag tctggacttg atgataccta
      601 cagccaagac cacttccagc acagtgctgg cttagtcttc cagtttggtg gaaaagacac
      661 cgacaaagac ggcatcaacg atgatgaaga ccagtgccca atggttcctg gtttaaaaga
      721 atttaatggg tgtcctgaca cagacggtga cggtattgaa gatgctaaag atgagtgtcc
      781 tgaggtagca ggttcagcgg actttaacgg ttgccctgat tctgatggtg atggggttga
      841 agaccgaaaa gacgagtgtc caaaaagaaa aggtcctatg gaattgggcg gatgtcctga
      901 tcgagataaa gatggtgtag ccgataaaga tgacgcctgt cccactgagg caggagaccc
      961 taacttaggg ggctgccctg acgccgatgg cgatggtgta gccgacaaag atgacgcatg
     1021 tcctcaagaa ggtggtaccg tagctaatgg tggttgtccg gaaatgagta ttgatgtaat
     1081 tgaagagctt aatacctcaa cagcggctat tctatttgct ttgggcagta acgaattaaa
     1141 ctacgaaggt aaagccatac tcgatgagat tgcccaagtg ctaaaggcct acccaactac
     1201 ttcattggag attgcagggc acacgtgtaa tatcgatacc cttacgttca atcaaggtct
     1261 ttcagaggcc cgtgcgaaag cggtacgtca atatcttatc actaaacaag gcgttagtcc
     1321 ttcgagactt actgccaaag gatacggtga aaacgagcca attgcagaca atgctactgc
     1381 agaaggtcgt gctaaaaaca gacgtgtaga gattcgcgta aacgaataat ttttctgagc
     1441 acagaaaaga taaaccccgg actgcgtccg gggttttttg tttgaattat ctttgaacag
     1501 gacgaaatgc catcatttca aaatgaaatc aaaatacaat cggaataaat ccgcgcgcta
     1561 acatgactac tttgaatacc cataggcaca gacctaaaac gataaaagcc atactttttg
     1621 acatggatgg ggtcatcgtg gacagtgaac cgctgcatca taaggcctat tatatgatgt
     1681 ttgaagaggt cggcattcgc gttagtccag agttatatgc ctcttttacg gggcaagcga
     1741 ccttagagat ctgtaacacc ctctgcgctc attttaaatt atctcaacac cccgaagaac
     1801 ttgtcgccat caaacggcgg tattttaaaa cactttttga cgaggatcct gatttcgatt
     1861 tgattcctgg ggtgctttct ttgattcaag attaccataa aagtggccta accttggttt
     1921 tggcctcttc cgcctctatg gaaaatatca atcgcatctt taagcgcttt gatctggatc
     1981 agtattttat cgccaagcgc tctggggcgg acttagcggc ttcaaaaccc caccctgaaa
     2041 tatttgaaaa agcggctgcg gcctcaggct ttgggccaga acaatgttta gttatcgagg
     2101 attcagagaa tggaattacc gcggccaagg ccgcgggcat ctatgccatt gcttttgata
     2161 gtcctaattc caaagcgcag gactacacta aggcagactt agtcataaat tcgtttgaag
     2221 aaataaaata cgagcgcttg aaacgcatgt ttcgctaaaa gataccccnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnntcgcta aaagataccc cttttgggcg tgctcaatta tgcctttttt
     2401 accttgcgct tagcgccatt ttcgtcccaa tacttggtgc ggccctttgg ctgtccttct
     2461 tggtactcgg cttcttgttt gatttggccg ttggcatacc actgacgaca tattccgtgc
     2521 tttaagtcat tgacaaaata ttcttctgag cccaattgac ccgaagcata ccaccagcgg
     2581 aaaaccccct ctttcttacc cgctaaataa tacccttcca tacgcaactg tccgttttca
     2641 taattagtta ttacgcgacc ggtaaccaga gccccagaat cttttaattg ggctgaacct
     2701 tcttgcagcg ataggtcgtc aagttggttg tgataatagg tcgattgggc attcacggca
     2761 aagccgataa agaataacgc aagggtaagt agggattgtt taagattcat tagatgagtt
     2821 tttatctaga gactgcaatt tagtcaaata attggtctgt cgaatacgga tttaatcatt
     2881 tcaagacaag agctttaagc cgttgctgat gagttgttcc agttcttttt ggctgcgcag
     2941 agactccaaa gtgctccgca cttcatggcg cattgggtgg tctaaagaat tcatgagttc
     3001 caaaagctcc aaaaacatca accactcttt agggtatatg tccttgtttt cagtccaaaa
     3061 ctccagcaga gcctttgaac ttaagggcgt ttcgggggtg ttttgacgcc acgttctcaa
     3121 tacggcatat tccttatgca acgctttttc tgcctcactg tatttaattt tttgagtgga
     3181 aacttgtgat tttttatgga tgtttttaaa aga
//
LOCUS       DPUP01000058            7431 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10484,
            whole genome shotgun sequence.
ACCESSION   DPUP01000058 DPUP01000000
VERSION     DPUP01000058.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7431)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7431)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7431
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            185..775
                     /locus_tag="DHV98_01995"
     CDS             185..775
                     /locus_tag="DHV98_01995"
                     /inference="COORDINATES: protein motif:HMM:PF00127.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05157.1"
                     /translation="MKKSLQILALALILNLSASLSAQTTYNLDWGLNINGAAASLTLE
                     PGDTVEWTWVDNLQHNVASTASAQESFNSGLIQGQGSTWSYTFTEVGVNDYECTPHSS
                     SMFGTITVEEALSVDDKFARNLLFTLSQSTNRLRIQSLMQIDELVIYNLLGVPQMRVM
                     VRDQYAEVDLSALVSGVYLVKATSQKAQTTFKVVKR"
     gene            complement(814..2124)
                     /locus_tag="DHV98_02000"
     CDS             complement(814..2124)
                     /locus_tag="DHV98_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019668731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCK05158.1"
                     /translation="MNDILLLFLFSLVGVAGFFLGGYFSNLKRKSDHIALSTRLEQLQ
                     DQNQHLTQELEQNRNERGLLKEDLIRAESTVDQLTQKLADQKRDLEEIQKKFSSEFEN
                     LAQKILETKSEKFTKQNKENLDHLLKPLQEKIEKFEKRVEATHKDNIDYHAALRQQII
                     GLTELNEQMSREATNLTKALKGDSKFQGNWGELVLERVLEKSGLERDREFFVQQSFTN
                     DQGQRLLPDVVLHLPEGKRMIIDAKVSLTSYERYINCEDEDERLKYLKEHVNSLKKHV
                     EQLSAKNYFELYDIESPDFVLLFVPIEPAFALALNYDNSLYTSAFEKNIVIVTPTTLL
                     ATLRTIDSMWTNEKQQQNAIEIATQAGRLYDAFHRLSEDLLKIGDQMDRAKGSYSEAM
                     RRLTDGPGNLVSRVEKLKKLGAKATKQQNEKLLRRAQDADSEES"
     gene            complement(2165..2938)
                     /locus_tag="DHV98_02005"
     CDS             complement(2165..2938)
                     /locus_tag="DHV98_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05159.1"
                     /translation="MLTASNISIGYNIKSKKPLILAEEVNFTLVPGQLTAIVGPNGSG
                     KSTLLNTLSGQLAPLEGTILIDNQPIAHISHFIQSKYLALVLTKKEFSQHLSVLEFVR
                     LGRIPYTNWLGSLGPEDHQVVAQAIESTHLTDLLNKKCGTLSDGQMQRVAIARALAQD
                     TPLILLDEPTTHLDLVHKAQTLRLLKNLAQQHNKAVAFSTHDIELALDLADQMICVSE
                     RTITTGSPNNLIDAGVINAIFQSDLVRFDRETKRFSITD"
     gene            complement(2962..4081)
                     /locus_tag="DHV98_02010"
                     /pseudo
     CDS             complement(2962..4081)
                     /locus_tag="DHV98_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006990427.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter"
     assembly_gap    3401..3481
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4143..4253
                     /estimated_length=111
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4254..5327)
                     /locus_tag="DHV98_02015"
     CDS             complement(<4254..5327)
                     /locus_tag="DHV98_02015"
                     /inference="COORDINATES: protein motif:HMM:PF01497.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCK05160.1"
                     /translation="MHWRYFIVIILGLQTFLGCKDPKTTSNLAHGCLNAQRVTYAKGF
                     CLTQQNGYTLLKILDPISGQMKQQIALVPEGARYPEGFSSDQLIKVPITSIVATSTTH
                     IPPLELLDRATALSGFPNLDYISSSLTRARIDSEMVQELGQNEALNIEVLVSLKPDVL
                     MTFSIDETQNGLEKVKQAGIPLIYNGDWTEQHPLGKAEWIKVFGALFDIEAQADSIFR
                     TIEKEYLNLKSLAKQSQTQPTVISGALYKDIWYAPKGDSWAAKFIEDAHGLYLWKDTA
                     GTGSLQWNIEEILQYTHKAQIWIGPGQFTRYDQMAQSSPTYTQFKPFQDKKVYTFSST
                     KGPTGGLLYYELASMRPDWVLSDL"
     regulatory      5373..5565
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            5653..>6337
                     /locus_tag="DHV98_02020"
     CDS             5653..>6337
                     /locus_tag="DHV98_02020"
                     /inference="COORDINATES: protein motif:HMM:PF07715.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05161.1"
                     /translation="MSIRYCLLALLLGFIPGVLAQNTNVLSSSIDTLDTLDALARSKD
                     TLAEQTLLDQVLISTKRLAAISQEQANTILMKQELISTFSGQSVAAMLNQIGGIEMSG
                     ATGHSGQNLGYYVRGGNNRQVLIMVDGAVVSDASGIATDFDLRLLPVDQIESISIVRG
                     PSSVLYGSGAATAVIYIKTKQYNAQKPSLVLEQSLGSNRSVNQSPLSGIQQGHSARFA
                     MGQGPWVIQA"
     assembly_gap    6338..6513
                     /estimated_length=176
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6514..>7431
                     /locus_tag="DHV98_02025"
     CDS             6514..>7431
                     /locus_tag="DHV98_02025"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05162.1"
                     /translation="MIQAQASGRFTDGLSAIAASENERAFDPDQFSQFNTRVQIKYRS
                     KKRWSMQQFFAYDQLRQDFDNFNYQDALFQSATKQWRTGGSFYFVGKDSRYEFHDQWS
                     HTHRDINSDYPAAYRALNYNADQFIATRWNNQFESVLGAQGGWSSMDLAQSNGASNRL
                     STVLSHGDTRTYFIDSYVNLSYKPLASISIDFGGRWHHHMRYGNQGVYQISPRYSFAN
                     LWGDFSLYGRYGTAFIAPSLYQLYDPIYGNQDLKPEFNKSTELGMVWQKNRLKWAIRW
                     FQRYEEQAVIFALLDPELFVYQYANNLQDQ"
BASE COUNT         1972 a         1478 c         1573 g         2040 t
ORIGIN      
        1 caagaaattg ggacctgaaa tgaaaagtac tggtgagagt atcttgttta tcgatagttt
       61 aaaagacgac gaattctatg agctctatgc ccgcagaaaa atgtatttga ataaataatt
      121 aaattatcct cattaaagta gggttttgac gaccttgctt gttataccta caaagaacat
      181 aaacatgaaa aaatctttac aaatattagc gctggcccta attcttaatt tatctgcaag
      241 cctatccgct cagacgacct acaatttaga ttggggttta aatataaatg gtgctgccgc
      301 ctcgttgacc cttgagccag gagacaccgt tgaatggact tgggtcgata atcttcagca
      361 caatgtagcc agtactgcct cggcacaaga gagtttcaac agtggattaa ttcaaggtca
      421 gggatcgacg tggtcctata cttttacaga ggttggggtt aatgattatg aatgtacccc
      481 acacagttct tctatgtttg ggacgattac ggttgaagag gctttatcgg ttgacgataa
      541 attcgcgaga aacttattat tcactctgag tcaatcaaca aatcgcctgc gtattcagtc
      601 gttaatgcag attgatgagc tcgtgattta caaccttctc ggtgtgccac aaatgcgtgt
      661 tatggttcgc gatcaatacg ctgaagttga tttatcagct ttagtgtctg gcgtttattt
      721 agttaaagcg accagtcaaa aggcgcaaac cacctttaag gtcgttaagc gataaacgaa
      781 cttgatgcac caggtctaga tgcgttaagg aatttaggat tcctccgaat cagcatcctg
      841 ggcccgtcgc aacagttttt cgttttgttg ttttgtcgcc ttcgcgccca gtttttttag
      901 tttttctacg cggcttacta aattaccagg accgtctgtg agacgcctca tggcctctga
      961 ataagaacct ttggcgcgat ccatctgatc acctatcttg agcaaatctt cactcaggcg
     1021 atgaaatgca tcgtaaagtc gcccggcctg tgtggcaatt tctatcgcat tttgttgctg
     1081 tttttcgtta gtccacatgc tgtcaatcgt gcgtaatgtg gccaagagtg tcgtcggtgt
     1141 gactatgacg atattctttt caaaggcgct agtatacaaa ctgttatcgt aatttagtgc
     1201 caaggcaaaa gcaggttcaa tcggtacaaa aagaagtaca aaatctgggc tttcgatgtc
     1261 gtataactca aagtaatttt tggcactgag ttgttcgaca tgcttcttga gtgaatttac
     1321 gtgctcttta aggtatttta ggcgttcatc ctcatcttca caattgatgt agcgttcata
     1381 actggtgagc gaaaccttgg cgtcaatgat cattcgtttt ccttccggaa ggtgtaaaac
     1441 cacatcagga agaaggcgct ggccttgatc attagtaaaa ctctgctgta caaagaattc
     1501 acgatcgcgc tcaagcccac tcttttcaag cacgcgctct agaacaagtt ccccccaatt
     1561 accttgaaat ttactgtccc cttttaaggc cttggttaaa ttggttgctt cgcgactcat
     1621 ttgttcattg agctcagtaa gtccaataat ttgctggcgc agagcggcgt gataatctat
     1681 attgtcttta tgagttgctt caactctttt ttcaaacttt tcaatttttt cttgcagtgg
     1741 cttgagcaga tgatcaagat tctccttgtt ttgtttggtg aatttttcgc ttttagtctc
     1801 gagaattttt tgggcaaggt tttcaaattc actgctaaac tttttttgaa tctcctctaa
     1861 atcccttttt tgatcggcta atttttgagt caattggtcg acagtagatt ccgcgcggat
     1921 caagtcttct ttcaataggc cccgctcatt gcgattttgc tctagttctt gggttaggtg
     1981 ctgattctga tcttgtaact gctcaagtct tgtgctcagg gcaatatgat ctgactttct
     2041 tttcaaattc gaaaagtagc cccctaaaaa aaagccagcc acgccaacta atgaaaaaag
     2101 aaataacaac aatatatcgt tcatggggta caattagaaa ttaatggtgt agcagtaaag
     2161 ataattaatc tgtgatggaa aatcgctttg tttcccggtc aaaacgcacc agatcgcttt
     2221 gaaaaatagc gttaattacc ccggcatcga ttaaattatt tgggctgccc gttgttattg
     2281 ttcgttcaga tacgcaaatc atttgatcgg ctaggtctag ggccaattca atatcatggg
     2341 tggagaaggc tacggctttg ttgtgctgct gcgccaaatt ttttaaaaga cgtaacgtct
     2401 gcgccttatg gaccaggtcc aaatgagtcg tgggctcgtc taataaaatg aggggcgtgt
     2461 cttgtgctaa agctcgggca atggcgaccc gttgcatttg tccatcactt aacgtgccac
     2521 attttttatt gagcaggtct gtgagatggg tggattcaat ggcttgcgca acgacttggt
     2581 gatcctcagg tccaagactt cccaaccaat tagtataagg aattcgtcca agtctcacga
     2641 attctaagac actcagatgt tgggaaaact cttttttggt caggacaaga gcaagatatt
     2701 ttgactgaat aaaatgtgaa atatgagcaa tgggttgatt gtcgattagg atcgttcctt
     2761 ctagaggggc caattgacct gaaagtgtat tgagtaaggt agattttcca gaaccattgg
     2821 gaccaactat tgcggtaagt tgtcctggga ctaaggtaaa attaacctct tcggccagaa
     2881 ttaaaggctt cttagatttt atattataac caattgatat gttgctggcc gttaacacgt
     2941 tttgagtcga agtctatatt tttaaaataa taggtttttt cgtcgcagca atatccaaat
     3001 aaccaccgga gctcctaaaa tagaagtaat ggcatttata gggagggtca tactgctgaa
     3061 gggtatttgc gctactgtat cacacaaaag cataatgata ctgccccaaa gaaaactcga
     3121 tgggaccata attttatggt cgggggaacc aataatttga cgtaccaaat gcggtacggc
     3181 cagaccaata aaggcaatag gaccagcaaa tgcagtaata cttcctgcta aaacactcgt
     3241 ggcaagaacc atcaaaaatg tactcttctt aatcgaaacg cccagacttt gggcatattg
     3301 tggcccaagc agcagtgcgt tcattgattt taatgaagcc acggcgacca caagtcctat
     3361 gattacacta atgaataaga taatgacccc agtccaagat nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nagtccaaga taaatggccc aggcctccaa aagaccaaaa tacaaattgt tgtagtgcct
     3541 ctgcgcgact aaaataactg agaacactta caatcgcgcc ggtcagactg ccaaacatga
     3601 gtccgatgat cagtaaagcc atggcgtctt ttattttaga cgcagcgcta attacggcca
     3661 aaagcactaa aaaacttcct gatgcagaag cgatgaccat ggcccaaggc cccgatagag
     3721 cactcacgcc caggcctgta aagagccctg aaccaagcac taaaaaggcc acccctaaac
     3781 tcgcaccact actgattccc aagacaaaag gaccggctaa ggggttgcga aataaggttt
     3841 gcattaggag gcccgagacc gataaaccgc caccgactaa tattgcggta atggcctttg
     3901 gtaagcgata atctgtcaga atataatgcc aagtctcatt aatattggtc tcagtaaaaa
     3961 aggccgtgaa aatataatct gtgggaatat aaacagagcc caaactcaga ttgagcacta
     4021 cagatagggc caagagcaaa atgggccaaa ggaagagacc ttttatttct ttccggctca
     4081 tggggctaaa ggtgtaaaaa atttaggttc atagtctgga gcgagtaatc cggggtgtaa
     4141 tannnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncaaatca
     4261 ctcaaaaccc aatccgggcg cattgaggcc agctcataat agagcagtcc tccagtgggc
     4321 cctttagtgc tgctgaaggt atagaccttt ttgtcttgaa acggtttaaa ttgtgtgtag
     4381 gtagggctac tttgggccat ttggtcataa cgcgtaaatt gtcctgggcc aatccaaatt
     4441 tgggccttat gggtatattg aagtatttct tctatgttcc actgcagact ccctgttcct
     4501 gcggtatcct tccaaagata aagaccatgg gcgtcctcaa taaattttgc cgcccagcta
     4561 tcgccttttg gggcatacca aatatcttta tacagcgctc cactaatgac cgtgggttgc
     4621 gtttgggatt gttttgctaa agatttaaga tttaggtatt ctttttcaat ggttcgaaaa
     4681 atcgagtccg cttgggcctc tatgtcaaaa agagcgccaa aaactttaat ccactctgct
     4741 ttacccagtg gatgttgttc agtccaatca ccgttgtaga ttaaaggaat ccccgcttgt
     4801 tttacttttt ctagtccatt ttgagtttcg tcaatactga atgtcataag cacatccggt
     4861 tttaggctca ctaaaacttc gatatttaag gcttcatttt gcccaagctc ttgaaccatt
     4921 tctgagtcaa ttcgggctct agtgagcgaa gaggaaatat aatccagatt cggaaaacca
     4981 ctgagtgctg tggctctatc gagtaattca agcggaggga tgtgggtcgt ggaggtggca
     5041 acgatagagg ttatcggcac cttaatgagc tgatcagaag aaaaaccttc aggataacga
     5101 gccccttcag gaactagcgc tatttgctgt ttcatttgac cgctgattgg atccagtatt
     5161 ttaaggagcg tataaccatt ctgctgcgta agacaaaacc ctttagcgta agtgactcgc
     5221 tgagcattta agcacccatg agctaaattt gaggttgttt tagggtcctt gcagcccaaa
     5281 aacgtttgaa gtcccaaaat aataactata aaatatcgcc aatgcatgct caaaaataaa
     5341 tcaaataatg gggtcaatga atggatttgc cgtaatttta ccccgctttt ggtttttttc
     5401 tttaatgaaa aaattaaaag ggaatctggt ggaaatccag agctgttccc gcaactgtaa
     5461 gctgccttag caataaggtc accatttctt caaccactgt gcatagcatg ggaagggcgg
     5521 tgcaacgagt aagtcaggag acctgccatg agcaatcaac gtccaacttt cgggataaaa
     5581 gtttgggggt aggtatctgg tgtttacact gtgacgcata cgtcctttat tgttccgatc
     5641 aattatttga tcatgtctat tcgttattgc ctattggcgc ttttattggg gtttatcccg
     5701 ggggttttgg cccaaaatac aaatgtttta tcgtcttcaa tagatactct agatactcta
     5761 gatgctctgg cgcggtcaaa ggacacgttg gctgagcaaa ccctgctcga tcaagtgctg
     5821 ataagcacaa aaagactcgc ggctatttct caggaacaag ccaatactat tttgatgaag
     5881 caggagttaa ttagcacctt ttcgggtcag tcagtagcag ctatgctgaa tcaaataggg
     5941 ggtatagaaa tgagtggggc tactgggcac tccggtcaaa acctgggcta ttatgtgcgc
     6001 ggcggaaata atcgtcaagt cctaatcatg gttgatgggg cagtggtcag tgatgcgtcg
     6061 ggcattgcta cagattttga cctgagactc ttacccgtgg atcagattga atccatttca
     6121 atcgtaagag ggccctcaag tgttctttat ggttcaggag cagccaccgc cgtcatttat
     6181 atcaaaacca agcagtacaa tgcacagaag ccaagtttgg ttctggaaca atccttgggc
     6241 agtaatcgat cagtgaatca gagcccactc agcggcatac aacaaggcca ttcggctcgc
     6301 ttcgccatgg gtcaaggacc atgggtgata caagcacnnn nnnnnnnnnn nnnnnnnnnn
     6361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnctgatac aagcacaggc cagtggccgt
     6541 tttaccgatg gactgtctgc tatcgcagca tctgaaaatg agcgtgcctt tgacccggat
     6601 caattcagcc aattcaatac gcgggttcaa ataaagtatc ggtcaaagaa gcgatggtcg
     6661 atgcaacaat tttttgctta tgaccagtta agacaggatt ttgacaactt taattatcaa
     6721 gatgcccttt ttcagagtgc gaccaagcaa tggcgtactg ggggtagttt ttattttgta
     6781 gggaaggatt ccagatatga gtttcacgac caatggtccc acacccatag agacataaac
     6841 agcgattatc ctgcggcata ccgcgcgcta aactataacg cagatcaatt tattgccacg
     6901 cgctggaaca accaattcga atcggtttta ggggctcaag ggggctggtc gtctatggac
     6961 ttggcgcaat ccaatggcgc ttcaaatcgg ttgagcaccg tcttgtctca tggcgataca
     7021 agaacttatt ttatcgattc ttatgtaaat ctgagttaca aacccctggc gtcaatttct
     7081 atagatttcg gtgggcgttg gcatcaccat atgcgttatg gcaatcaagg tgtttatcaa
     7141 attagtccgc gctattcttt tgcgaatcta tggggagatt ttagccttta tggccgctat
     7201 ggaaccgcat ttatcgcccc ttctttatat cagttatacg accccattta tggcaatcaa
     7261 gatttgaaac ctgaattcaa caaaagcact gagctcggaa tggtatggca gaaaaaccgg
     7321 ttaaagtggg cgattagatg gtttcagcgt tatgaggagc aggcggtaat atttgccttg
     7381 ttggatcctg agctttttgt ttatcaatac gccaataacc ttcaagatca a
//
LOCUS       DPUP01000059            4407 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8926,
            whole genome shotgun sequence.
ACCESSION   DPUP01000059 DPUP01000000
VERSION     DPUP01000059.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4407)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4407)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4407
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1747
                     /locus_tag="DHV98_02030"
     CDS             <1..1747
                     /locus_tag="DHV98_02030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="organic solvent tolerance protein OstA"
                     /protein_id="HCK05163.1"
                     /translation="FPDFTQSSLYNIRWRHTQDPKVNPSTRFSASVNLGSSRYLQQSI
                     NQTNNASQLVNTLSSSVSYAKSFDTEPAIQFSAAATHSQNTQTQVINMSLPNINASIS
                     RIFPFAPKDGAKKGVFQNINLQYDVTAENRFTTTDSLFFKPEMFEGAEAGARHSIPLG
                     TNFKLLNYLSVSLGTNFRETWVGKTIRRSYDPELNDGLGGVVQDTVSGFDSYRTYGFS
                     AGLGTTVYGTFNFGKDKKIQAIRHVVRPSVSYNISPGFEQYYEEYTIPSADPQVNAQV
                     QQYSRFENTIYGAPGKLYSSSMSFALSNTLEAKVRNPDTTATEPKKIALLNNFNLSSA
                     YNITADSLNWSNVQFTGSIPIVKKLDLNVNGSLDPYALNANNQKINTFNINNGGSLFR
                     LVNANMSFNYSFSSKDFDGSRSDDDDDNANDPDFNNDTFRNGGRPDDLFGDGRDIADL
                     RGDEPADKDKKQEDDKWYNNSIPWDFRLAYTITYGNQLRQNEISSNSLMMSSNISLSP
                     KWRIGISSGYDFKNKGITLTQMRFERDLESWVMRFSWTPIGARNTSWNFFIGIRGSIL
                     RDIKYDKRREADRRL"
     gene            1762..2142
                     /locus_tag="DHV98_02035"
     CDS             1762..2142
                     /locus_tag="DHV98_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reactive intermediate/imine deaminase"
                     /protein_id="HCK05164.1"
                     /translation="MKKIIHTHHAPAPIGPYSQAVRMGNTVYTSGQIAIDAKTGLLIQ
                     GSISDETHQVMRNMQAVLEAAGLGFEHVLKSTIFITNMDDFGAINDVYASYFDSDHAP
                     ARETVQVARLPKDVRVEISMIAAD"
     gene            complement(2156..>4407)
                     /locus_tag="DHV98_02040"
     CDS             complement(2156..>4407)
                     /locus_tag="DHV98_02040"
                     /inference="COORDINATES: protein motif:HMM:PF04357.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HCK05165.1"
                     /translation="SIFTGSRYFNDLRWVNGAPADTINTSISLKGGKKKQDNYELDLF
                     QTKDSLGNAVIGLNPSLLSLGDQIWQFNKDNQPQTHRLTIGEDFSLNLSPLILSNKSE
                     TIALSGFRDAETALSLELDFDQVNIDHILPSIEDLKLAGMLNGRLQFKKIEENYFPSS
                     SLTLSSFEVNEVPMGDLSVSITGNKDLTQYRINSTLNKDGNNKFKAMGAIDLDKDAPY
                     LDMNLSLRDFDLKALSPLGRTVLSDISGFVDGRAKIQGRYSAPSVSGDLTLKSTKLRI
                     PYLNIDLAVEDKARIAISNGVFTIPPTRLTDLKYDTQATLGGLVTHENFGDWALDLNM
                     TTERFLALDTPAEESVLYYGTTFIDGGATIVGPADELVIDVTARTQKGTTFKIPISDV
                     ATVGDDSFIRFISPEEKTARINGTTFVPDEIKGLTVNFDLDINDQAEVEILVDPANNS
                     KFKGRGTGLMFIEINTLGKFKMWGEFVVIQGNYDFKYGGIVDKTIDVVPGGRISWNGA
                     ADEAQLDLTAKYRVEDVNPSALLDNPSLNSTIDVEVLLNLTGQIMQPELDFQLDFPNV
                     SSAVRDELNVKLNEREQRQLQAIYLAATGAFQGDGGQNIVGTLTERVNKLVADLLADS
                     DSKFKILPTIGTRQVDLNAQLEYNVGVQISTQISERVLINGKVAVPVGGANDSAVAGD
                     IQVQWLVNDDGSLRMNFFNRQADLQFIGEDQIFEQGAGASYTVDFSTFQELFFKLFGK
                     RMDRDRLTQ"
BASE COUNT         1249 a         1044 c          940 g         1174 t
ORIGIN      
        1 ctttcccgat tttacccaaa gcagtcttta caacattcgt tggcgccata cccaagaccc
       61 aaaagtcaat ccaagtaccc gctttagtgc ctcggtaaac ctggggagca gccggtatct
      121 tcagcagtcc ataaaccaaa caaacaacgc cagtcaattg gttaataccc tgagttcttc
      181 agtgtcctat gccaaaagct ttgacacaga accggcgatt cagttctctg cggcggcaac
      241 acacagccaa aatacccaaa cgcaggtcat caatatgtcc ctgcccaaca tcaatgccag
      301 tatttcaaga attttcccct ttgcgccaaa agacggggcc aaaaaagggg tctttcaaaa
      361 cattaacctg cagtatgacg tgacggcaga aaatcgcttt accaccaccg atagtttatt
      421 ttttaaaccc gaaatgtttg agggcgcaga agcaggagcg cgtcattcca tccctttagg
      481 aaccaatttt aaattgttga attatctgag tgtatccttg ggcactaatt ttcgagaaac
      541 atgggtaggt aaaacaatca gacgctccta cgaccctgag ctcaacgacg gattgggtgg
      601 tgtggttcag gataccgtat cgggatttga cagttatcgc acttacggct tctcagcggg
      661 cttagggacg acggtttacg gaacctttaa ttttgggaaa gacaagaaaa ttcaggcgat
      721 tcgtcatgtg gttcgacctt ctgtaagtta taatatcagc ccgggttttg aacagtacta
      781 cgaagaatac accatcccct ctgccgaccc acaggtcaat gcccaagtgc aacagtattc
      841 aagatttgaa aacaccattt atggggcacc aggcaagtta tactcgagca gcatgagctt
      901 tgctttgagc aatacccttg aagctaaagt gcgtaatcca gataccacgg cgactgaacc
      961 aaagaaaatt gccctgttga acaactttaa tttgtcttct gcctataaca ttacggcaga
     1021 ctcattgaac tggagcaatg ttcaatttac ggggagcatc cctattgtta aaaaacttga
     1081 tttaaacgtt aatggttcct tagaccccta tgcgctcaac gcaaacaatc aaaaaattaa
     1141 cacatttaac atcaataatg gcgggagttt attcagactg gtcaacgcca acatgagttt
     1201 taactattcc ttttcctcca aggattttga tggaagccgc tccgatgatg acgatgacaa
     1261 cgcgaacgac ccagatttta ataacgatac cttccgcaat ggcgggcgtc ctgatgattt
     1321 attcggcgat gggcgcgata ttgctgattt gcgcggtgat gagcctgccg ataaagataa
     1381 aaagcaagag gacgataagt ggtataacaa cagcatccct tgggattttc gtttggccta
     1441 caccataact tacgggaatc agctcagaca aaatgaaatc agttcaaact ctcttatgat
     1501 gagttcgaac attagtcttt ctccaaaatg gcgcattgga atctcttcag gttacgactt
     1561 taaaaacaag ggaatcaccc tgacccaaat gcgttttgaa cgggacctag aaagttgggt
     1621 tatgcgcttt agctggaccc caattggcgc aagaaataca tcgtggaact tctttattgg
     1681 gatccgagga agtatcctaa gagatattaa atacgacaaa cgaagagaag ccgatcggcg
     1741 actttaatca aaactgaact catgaaaaaa attatccaca cccaccacgc tcctgcgcca
     1801 attgggccat acagtcaggc cgttcgtatg ggcaacacgg tttatacttc agggcaaatc
     1861 gcgatcgacg ccaaaaccgg tttactcatc cagggctcta taagtgacga aacgcatcaa
     1921 gttatgcgca atatgcaggc ggtacttgag gctgcagggc ttggatttga gcacgttcta
     1981 aaaagcacca tttttatcac caacatggat gattttggcg cgatcaatga cgtctacgca
     2041 agttattttg attcggatca tgcgcccgcc cgagaaacgg tacaagtggc tcgtttgcca
     2101 aaagatgtcc gggtcgaaat ctctatgatt gccgcagatt aaatttaatc aaggattatt
     2161 gggtcaatcg atctctgtcc atacgcttgc caaagagttt gaaaaataac tcttgaaagg
     2221 tagaaaaatc tacagtgtaa gaagcacccg ctccttgctc gaaaatttga tcttccccaa
     2281 taaattgtag gtcagcctgt cgattaaaga aattcatacg caaagatccg tcgtcattga
     2341 cgagccattg cacttgaatg tcccctgcca ctgcagaatc attagcgccc cccaccggca
     2401 ctgctacctt accgttaatc aagacacgtt ccgaaatttg ggtgctgatt tgcacgccaa
     2461 cgttatattc taactgagca tttaaatcca cttgacgcgt cccaatggtg ggcaatattt
     2521 taaacttaga gtcgctgtct gccaacaaat cagccacaag tttattgacg cgctcggtga
     2581 gggtccccac aatattttgg cccccatcgc cttgaaaggc cccggtagcg gccaagtaaa
     2641 tggcttgaag ctgtctttgc tcgcgctcgt tgagcttgac attgagttca tcgcgaaccg
     2701 ccgaggacac attagggaaa tcaagttgaa aatccaattc gggttgcatg atttgaccgg
     2761 tcaaatttaa aaggacctcg acatcaattg tgctgttcag tgagggattg tccaagagcg
     2821 cagatgggtt gacatcttca acgcggtatt tggcggtcaa atcgagttgc gcctcatctg
     2881 ccgccccatt ccatgagata cgccctccag gcactacgtc gatggttttg tcgacaatac
     2941 ccccgtattt aaagtcgtaa ttcccttgaa tcaccacaaa ctcaccccac attttgaatt
     3001 tacctaaggt gttaatttcg ataaacataa gtcccgttcc tcgaccttta aattttgagt
     3061 tattggcggg gtccacaaga atctctacct cggcttgatc gttaatatcc aggtcaaaat
     3121 tcacggtcaa tccctttatc tcatcaggca caaaggtggt tccattgata cgggccgttt
     3181 tctcctcggg cgaaataaat cgaataaatg aatcatcacc cactgtggcg acatcactaa
     3241 tgggaatctt gaaggtcgtc cctttttggg tgcgcgcggt gacatcgatc accaattcat
     3301 ctgcgggccc aactatggtt gccccgccat cgataaaggt agtcccgtag tacaggaccg
     3361 attcttcggc tggggtatcc aaggccaaaa agcgctctgt ggtcatattg agatccaagg
     3421 cccaatctcc aaagttttcg tgggtgacca ggcctccaag cgtggcctgt gtatcgtatt
     3481 tgaggtcggt taggcgcgtg ggcggaatcg taaatactcc attggaaatg gcgatgcgtg
     3541 ctttgtcctc aacagccaga tcgatattca gataagggat gcgcagttta gtgcttttaa
     3601 gcgtcaaatc acccgagacc gatggggcac tatagcgtcc ttggattttt gcacggccat
     3661 caacaaaacc cgatatatca ctcaaaacgg tacgccctag agggcttagg gctttgagat
     3721 caaaatcacg caaactcaaa ttcatatcta aatacggtgc gtccttatcc agatctatgg
     3781 cccccatggc cttaaacttg ttattgccgt ctttgtttaa ggtcgaatta atgcggtact
     3841 gggttaagtc tttattcccc gtaatgctca cactcagatc acccatcgga acttcgttta
     3901 cttcaaaaga ggatagcgtt agacttgaac tgggaaaata attctcttct atttttttaa
     3961 actgtaaacg gccattgagc atcccggcta attttaaatc ttcaatgctc ggtaaaatat
     4021 gatcgatgtt gacttgatca aaatctaact caagactcag tgccgtttct gcgtcgcgaa
     4081 atccactcag ggcaatcgtt tcagatttat ttgaaagaat taaaggggat aaattcaatg
     4141 aaaaatcttc tccgatggtt aatcgatgcg tttgcggctg attgtcctta ttaaattgcc
     4201 aaatttggtc tcccaaactc agtaatgacg gatttaaccc aattacggca ttgcccaaac
     4261 tatctttggt ctgaaacaag tctaattcat aattgtcctg tttcttttta ccgcctttaa
     4321 ggctaattga ggtgttaatg gtatcagcag gagcaccatt aacccagcgc aaatcattaa
     4381 aatatctcga acccgtaaaa atggaat
//
LOCUS       DPUP01000060            3339 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_21527,
            whole genome shotgun sequence.
ACCESSION   DPUP01000060 DPUP01000000
VERSION     DPUP01000060.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..558)
                     /locus_tag="DHV98_02045"
     CDS             complement(<1..558)
                     /locus_tag="DHV98_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05166.1"
                     /translation="MFTSFKKDFAASIVVFFVALPLCLGIALASGAPLFSGLIAGIIG
                     GIVVGALSGSQIGVSGPAAGLAAIVLTAISTLGGFENFIAAVVIAGFFQIAMGLLRAG
                     IIGLYFPSAVIKGMLSGIGLIIILKQIPHFFGYDHDPEGDFAFKQIDGENTFSEILAS
                     LDFINLGATVIALAAMATLLLWPKIQ"
     gene            complement(614..928)
                     /locus_tag="DHV98_02050"
     CDS             complement(614..928)
                     /locus_tag="DHV98_02050"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05167.1"
                     /translation="MESTVKYHVVVALFFAAIIVTPMVTQHCLALEHLAIEWSSFDDS
                     EKESSKKLLDDFSKDFISYGSVVERLNSSEELSRLNAGYLLNPQQLMVPVILDPPERN
                     KA"
     gene            1026..2078
                     /locus_tag="DHV98_02055"
     CDS             1026..2078
                     /locus_tag="DHV98_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015479914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M28"
                     /protein_id="HCK05168.1"
                     /translation="MISHYTRISFLILLFSFQVSAQETQNSDPTAKRIDFANTITADD
                     LSALLYSFASDSMQGRMTATPGQKKAAEFLQDFYQAQGISGALPGGGFYQNIPQEYFK
                     SKYVKTNSENVVAIIPGSTWPQEYVVLSAHYDHVGAKGDTIYNGADDDGSGTVALLEM
                     AQAFKQAADQGMGPKRSIVFLHVTGEEIGLYGSRYYTENPIYPLEQTVCNLNTDMIGR
                     IDPNKAGNENYIYLIGSDKLSQELHNLSEDVNQAFVQMELDYTFNDENDPNRFYYRSD
                     HYNFAKYNVPIIFYFNGVHEDYHQPTDTPDKIEYPLMAKRTQLIFHTAWEVANRAQRI
                     YADKLENKAAQDSDKR"
     assembly_gap    2101..2153
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2265..2953)
                     /gene="bshB1"
                     /locus_tag="DHV98_02060"
                     /pseudo
     CDS             complement(2265..2953)
                     /gene="bshB1"
                     /locus_tag="DHV98_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025542.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB1"
     gene            complement(2981..>3339)
                     /locus_tag="DHV98_02065"
     CDS             complement(2981..>3339)
                     /locus_tag="DHV98_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCK05169.1"
                     /translation="MATWLEAQPQVDRVFYPGLTSHPDHVLAQSQMCGFGGVVSFELS
                     KNLSAVSFLNHLKLIKRASSFAGVESTALIPAMTSHSLLTSEQRAALGISDQLIRFSV
                     GIESAEELQNDIAQAF"
BASE COUNT         1065 a          719 c          660 g          840 t
ORIGIN      
        1 ctggatttta ggccatagca ataacgtagc catagcggct aaagcgatca ctgtcgctcc
       61 gaggttaata aaatctaaac tcgctagaat ttcagaaaag gtattctcac catcgatttg
      121 tttaaaggca aaatcgccct ctggatcgtg atcatatcca aaaaagtgtg ggatttgttt
      181 taaaataatg atcaacccaa ttcctgaaag catccctttg atcacagcag agggaaaata
      241 aagcccgata attcccgcgc gcagtaaccc catggcaatt tgaaaaaaac cggcaataac
      301 cacggccgca ataaaatttt caaagccccc taaagtgcta attgccgtta gaacaatggc
      361 ggccaaacct gcggccggtc cactgacccc aatttgagaa ccactaagag ccccgacgac
      421 tatacccccg ataatgcccg caattaaacc ggaaaacaat ggagccccgc tggctaaagc
      481 aattccaaga cataagggta aggccacaaa aaacacgacg atactcgccg caaaatcttt
      541 tttaaaactc gtaaacatat tcaataatta agtgccggaa cattccggaa taaaacaata
      601 aagaagggca gaattaagct ttattgcgct caggaggatc gagaatcaca ggaaccatta
      661 actgttgagg attaaggaga taacctgcat tcagtctaga gagctcttca gaagaattaa
      721 gtcgttcaac gactgaaccg taactaatga aatccttgga aaaatcatcg agtaattttt
      781 ttgaggattc cttttcagaa tcatcaaaac tagaccactc aatagccaag tgctccaaag
      841 ccagacaatg ttgggtgacc ataggagtaa caatgattgc cgcaaaaaat agcgcaacga
      901 ccacgtgata tttaacagtt gattccatgt cgtacaaata taacaagaca tgaggctttg
      961 cactaaattt ttgggttgtt ttttaatcta aaatgtatct ttgagttatt cataacagat
     1021 acataatgat ttcacattac acgcgaatca gttttctgat tcttcttttc tcgtttcagg
     1081 tttcggctca agagactcaa aattctgacc caacagccaa aagaattgat tttgccaata
     1141 caatcactgc agacgatctt agcgccctgc tctactcctt tgcttcagat tcaatgcaag
     1201 gacgtatgac cgcgactcct gggcagaaaa aggctgcaga attcttacaa gacttttatc
     1261 aggcacaagg cataagcggt gctcttcctg gtggtggctt ttatcaaaac attccacaag
     1321 agtattttaa atcaaaatat gtaaaaacca atagtgagaa tgtcgtcgcc ataattccgg
     1381 ggtccacatg gcctcaggaa tatgttgtgc tctcggcgca ctatgaccat gtgggggcca
     1441 aaggcgatac gatctataat ggagccgatg atgatggcag cgggactgta gcccttctgg
     1501 aaatggctca agcattcaaa caagctgctg atcaaggaat gggcccaaaa cgttcaatag
     1561 tatttctgca tgttaccgga gaagaaattg gtttgtatgg ttcccgttat tacacggaaa
     1621 atccgatata tcccctcgag caaacggttt gtaacctcaa cacagacatg attgggcgta
     1681 ttgacccaaa taaggcggga aacgaaaatt atatctattt aatcggaagc gataaactaa
     1741 gtcaagaact tcacaattta tcagaagatg taaatcaggc gtttgttcaa atggaattgg
     1801 attacacttt taatgatgaa aacgatccaa atagatttta ttatcgcagt gatcactaca
     1861 actttgccaa atacaatgtg ccgatcatat tttattttaa tggggtgcac gaagattatc
     1921 accaacccac agatacccca gataaaattg aatatcccct tatggccaaa agaacccaat
     1981 taatattcca tacggcttgg gaggtggcca acagagcgca acgcatttat gcagacaaac
     2041 tcgagaataa agcggctcag gactcagata agcgctaaga aggggctcta gcgcaacaat
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnccaactg
     2161 agctacaacc accatttatg ctttgacaaa atccagtaag atcgggtcaa aaagcggagg
     2221 caaatataat tgaaaaagct acgttccgca atattttata aaaattaaat gaggtcaaaa
     2281 agactgcgtg tcgcgacata tcttttggtg ttaaagcctt caccaaaatc agtcccgata
     2341 agtcgtccta aattgcggta tcggtaggtc agactatccc gcgtattttc tgtagaaata
     2401 ggcgtttgag gctctttact gtttggatcg aaaaattgac ttttataggc aaaaaccgaa
     2461 gccagttttt gttccatgaa tcctgtgaca tcgacgacaa agtttggctc aatgtcattc
     2521 cattgaatat aatgataaac atgggcgggt cgccaagggc cttgagtgct tccctgatgg
     2581 aatgtttcaa tttttctaag gcccgataaa aaacatgaat ccgaaaccaa atcacttcct
     2641 tttggatgat caatgtgccg gtcttgcaag gcattacaca atacaanntc actttaagtt
     2701 gactttgacg gtcattttga aaaaacccat cggccaaacc aagatttacc ctaaaggaag
     2761 caccaagaat ttttgctgca ttcaaggcct cctgtttacg gatttcggga gtgccgcgcg
     2821 ttccgagttc tccttgagtt aaatcgacaa tcccaacggt tttacccgct gcaatctcct
     2881 tggccaaggt ggctcctgcg ctcatttcta catcatctgg atgagcacca aaggcgagta
     2941 tatctacggc aataacatgt tctaacatca atatcaataa ttaaaaggcc tgagcgatat
     3001 cattttgcaa ttcttcagca gactcaatcc ccacagaaaa tctaatgagt tggtccgaaa
     3061 ttccgagagc ggcacgctgc tctgaagtga gcaaggaatg tgaagtcatt gcaggaatta
     3121 aggcggtaga ctcaacaccg gcaaaacttg acgctcgttt aatgagtttt aggtgattca
     3181 aaaaagaaac tgcagacaaa ttttttgaca gttcaaagga cacgactcct ccgaaaccac
     3241 acatttgaga ttgagccagc acatgatcgg gatgacttgt taatcccgga taaaatacac
     3301 gatcaacctg cggttgtgcc tccaaccaag tggccataa
//
LOCUS       DPUP01000061            4692 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23961,
            whole genome shotgun sequence.
ACCESSION   DPUP01000061 DPUP01000000
VERSION     DPUP01000061.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4692)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4692)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            91..1056
                     /locus_tag="DHV98_02070"
     CDS             91..1056
                     /locus_tag="DHV98_02070"
                     /inference="COORDINATES: protein motif:HMM:PF01436.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05170.1"
                     /translation="MGTLGEGNYEYKPVPDWAKLPSDLILGDVAGIAVDDRDRVYLFN
                     RGKHPIVVLSQSGEIISTWGEGVFSNPHGASIGPDQCIYLTDNFDHTVRKFSLDGRLL
                     LKIGVAGESSGFMSGKPFCKCTHSAVSPAGDIFVSDGYQNACIHKFDPNGKLLMSWGT
                     SGTGPKEFNLPHNICCDSDGWVYVADRENSRVQIFDVNGQFETQINNMHRPSGLAITP
                     GTCPDCIVGELASYLEVNQNFPNIGPFVSIFDQQGNALSRLDAGLGAGLAPGQFLSPH
                     SIAYDSLGDLYVGDVVDADWDAVMHNKTKPVQPRRFQKLQKLVQK"
     gene            complement(1235..2348)
                     /locus_tag="DHV98_02075"
                     /pseudo
     CDS             complement(1235..2348)
                     /locus_tag="DHV98_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007677540.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
     gene            complement(2971..3891)
                     /locus_tag="DHV98_02080"
     CDS             complement(2971..3891)
                     /locus_tag="DHV98_02080"
                     /inference="COORDINATES: protein motif:HMM:PF00701.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HCK05171.1"
                     /translation="MIGKLYARKSFMHGIVPSLNTPFDVSGALDLSSLSKLVEHTVKT
                     GCGGMLGLAVAGEHDTLNYQEKIHFIYTVVKQNQGRIPFICSVTSTTFAETLNLTKAA
                     AAACVDGICVQLSPSLNLEEKLSFLKKLEKESPDIIMVQDLDWSSGGLSLEEIVFLYR
                     RIEKFKWLKIETSQAGPKYSAVKDATAQGLKVCGGWAVTQLMDAMARSVDAFIPTGLE
                     SIYVAIYHAYQGGEEQKARILFESILPILNFSNQHIDISIKFFKNLRVREGLFKSDYC
                     RSPSAVFDPVQSQEAKHATSRAMKLLSELN"
     gene            complement(4051..4692)
                     /locus_tag="DHV98_02085"
     CDS             complement(4051..4692)
                     /locus_tag="DHV98_02085"
                     /inference="COORDINATES: protein motif:HMM:PF03328.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05172.1"
                     /translation="MNNLYHMARAAQCANLPLMIKLDQESQGFWAQAALGAGFKSILF
                     SDIRTPDDIDICHKIIRPETPQIGGKMGIKIRRPSLSSYAPNKYLADLESTLFCIMLE
                     KKDAIDNIDLILKRAREKGVDMAQWGPADYSLSRGKPQLMFEDGIFPIEEKVIAKCIE
                     YNIAPRAEISDVEQAKRYIDLGVRHFCIGWDRFILQASLVKMGEGLRKLTESI"
BASE COUNT         1271 a         1088 c         1025 g         1308 t
ORIGIN      
        1 agtaatatta aaaactatta cttgctgcaa gcacgcagct ttcttatcct aacacagcat
       61 actaagataa cgacatgagg tatatcagag atgggcacac tgggtgaggg caactacgaa
      121 tataaacctg ttccagattg ggctaaactt ccatccgatc taattttggg tgatgttgct
      181 ggtatcgccg ttgatgacag agaccgagtg tatcttttta atcgtggtaa acatcccata
      241 gtagttctca gtcaaagtgg agagataata tcaacatggg gtgagggtgt ttttagcaac
      301 ccgcacggtg cctctatagg gccagatcag tgtatctatt tgaccgataa ttttgatcat
      361 accgtgcgta aattctcgtt ggacggtagg ttgctcttga agattggagt tgcgggcgag
      421 agctctggct ttatgagtgg gaaaccattt tgcaaatgca cccattcggc cgtttcacca
      481 gccggtgata tttttgtttc tgacggttat caaaacgctt gtatccataa atttgatcca
      541 aacggaaaac ttttgatgag ctggggaacc tctgggacag gaccaaaaga attcaatctt
      601 ccccataata tttgttgtga ttctgatggc tgggtttatg tggctgatcg ggaaaactct
      661 agggttcaaa tatttgacgt aaacggacaa tttgaaactc aaatcaacaa catgcatagg
      721 ccaagtgggc tagcaattac tcctgggaca tgccctgact gcattgttgg agaactggcg
      781 tcctatttgg aagtcaacca aaacttccca aacattggcc cttttgttag cattttcgat
      841 caacaaggaa atgctctatc aaggcttgat gcaggcttgg gtgccgggct cgcaccaggg
      901 cagttcctat cgccccatag catcgcctac gacagtctgg gtgatcttta tgttggcgat
      961 gtcgtagatg cagattggga cgctgtcatg cacaataaaa cgaaaccagt tcagccccga
     1021 cggttccaaa aacttcaaaa gctagttcag aagtaaaaag gcacttaatg tgaccttagt
     1081 gcagggtgtt aactgagcct tagaaaggca gccatgaaaa ctagggggag catccgaaac
     1141 tctgtgtatg aggcttagcc catgcggttt tgacgggtca tttattgaac cgttctgggt
     1201 atagaatagc gaactgattt cgcgcggcat actattaccg gcaggcgatg cttgcatcgc
     1261 tgagaggcca ttctctgacg catctgcctg ctttctcgaa gttgcggatc gccaggtaga
     1321 tcagctttgt tgcggcgtca tcggttggaa agctgccccg tgttttggtg gttttgcgga
     1381 tgaccctatt gaggctttca attgcattcg tcgtgtagat gattttccgc acggctggcg
     1441 ggaaggcaaa gaacgggatc acctcttgcc aggcccgccg ccatgagagc gcgatagacg
     1501 ggtatttccg gccccattct gcctcgaaat cagcaagagc tttctcggct tcgacatcat
     1561 cggtggcctg ataaatccgc ttcagatcct tggcgacatt tttacggtcc ttccatccac
     1621 agaagttcag ggaatggcgc accagatgca cgatgcaggt ctggacggtg gtctcaggga
     1681 agaccgcgtt gatggcatca gggaagccct tgaggccgtc aacaacggcg atcaggatgt
     1741 cttccacgcc ccggttgcgc aaattattca tcactgagag ccaaaacttg gctccttcgg
     1801 tgttggcgat ccatagcccc agaacctctc gttcgccctc aggggtgacg cccaaggcca
     1861 cataaacggc cttattcttt acctgacggc tttccgcgtc gcggattttg acccgtagcg
     1921 catcaagaaa aacgattgga taaattggtt cgagggcgcg gttctgccag tccgacacct
     1981 cctccagaac agcatcggtg gcacggctga taagatcggc tgacacctgc aggccgtaga
     2041 cttcctcaag gtgggcgcgg atgtcgcggg tcgacaaacc cgccgcatac agaccaatga
     2101 ttttgtcatc catgccgtca atccgggtct ggcctttccg gatcagctcg ggctcgaagc
     2161 tgccgtccct gtcgcgcggg atgtcgatgg gcacagcacc atcattgccc ttcagcactt
     2221 tacgggtcgc cccattgcgc cggttgctct gttggcgagc gggttcacca tggggttcat
     2281 agcccaaatg tgcgggtcaa ctcagcaccc agcattcgct ccatcaggcg gaccttcagt
     2341 tccttcatca ggcctttgtc gcccagcaga tcgtccgcgt tctcaacgcc gctcagcagc
     2401 tcgtctaaaa gttccttgga tatcgtcata gttatcatgc tccttcgttg ctgaagcatg
     2461 ggtcaattta ctcatacaca gaaggtcgga cactctcaaa ctaggatcag ataacgatat
     2521 atactcaata taatatgcag catcaacgct gtattatctc tgtcactcgc atatcattat
     2581 tataaatatc aacataaaac gacttgaaag taatcattaa aaaaaaatta aacctacaaa
     2641 aaagtaggaa ataattaggt cagataagca ataattcaga ttatagagtt gaagttgaca
     2701 taaaattccg agtctaaaac tgtttttgta acctccaaat tcatgggtgc actcgtagtg
     2761 gactatgcac cacttatcca tcttgatcag tcgcctttgc ttcaagaagc tgggcagacc
     2821 atgctctcgc acattgtgtc aaacacaagg tcttaggcac ttcaatcttc aaacggctat
     2881 cccctctgtt ctttgacgag ggtatacaaa actttggtgt aaaaaacttt tctaaactga
     2941 agaattgaaa aatgatcact ccagaaggag ttagtttaac tcggaaagaa gtttcatagc
     3001 acgtgatgtg gcatgcttgg cttcttggga ctgaactgga tcaaacaccg cagagggtga
     3061 acgacaataa tcacttttaa agaggccttc acgtactctc aaatttttga aaaactttat
     3121 acttatatca atatgttgat tcgaaaaatt taaaattggc aaaatacttt cgaataatat
     3181 tctggccttt tgttcttcgc cgccctgata agcatgataa atagctacat atatagactc
     3241 caatcctgtg ggaatgaatg catcgacaga tctggccatc gcgtccatta actgtgtgac
     3301 ggcccaacca ccacaaactt tcaggccctg cgcagtagca tcttttactg cactatattt
     3361 tgggcctgcc tgtgaggttt cgattttgag ccacttgaat ttttcgatcc ttcggtacaa
     3421 gaaaacaatt tcttctaggg aaagacctcc actcgaccag tcgagatctt ggaccatgat
     3481 tatatcagga ctttcctttt caagtttttt cagaaaggat aatttttctt caaggtttaa
     3541 gctgggcgat agctgcacac aaattccatc tacacaagct gcagccgccg cttttgtaag
     3601 gtttaaggtt tcagcaaaag tagtgctcgt aacgctacaa ataaatggaa tacggccctg
     3661 gttttgttta acaaccgtat agataaaatg aattttttct tgataattta atgtatcgtg
     3721 ctcgccagca acggccaaac ctagcatgcc accacaacca gtcttaactg tgtgttcaac
     3781 aagttttgaa agcgacgaaa gatctaatgc tccagagaca tcaaatggtg tatttaaact
     3841 tggaacaatt ccgtgcataa aagactttct cgcgtatagt tttccaatca tttacctcgg
     3901 aaaatcagcc tcgttcatca aaagtacaaa cgcattgcat cagttgtagg cagttttatg
     3961 gtccgcattc ctattattta ataatgtggt catgacactg aagtgaatta aaaatacctg
     4021 cattacgtcg ttcaaaaaat agtcagaaaa ctaaatgctc tctgtgagtt ttcttaaacc
     4081 ttcgcccatt tttactagac tggcctgtaa gatgaatctg tcccatccaa tacaaaaatg
     4141 ccgaacacct aaatcaatat accgttttgc ttgttctacg tcagatattt ctgctcgtgg
     4201 ggcaatgtta tattcaatac attttgcaat taccttttct tcaattggga atataccatc
     4261 ctcaaacatc aattggggct ttccccgcga caacgaataa tcagcggggc cccattgtgc
     4321 catatcaaca cctttttccc gagctctctt aaggattaaa tcaatattat cgatggcgtc
     4381 tttcttttcc aacattatac aaaaaagcgt agattccaaa tctgcaagat acttatttgg
     4441 ggcatatgac gataaagaag gccggcgaat tttaataccc atctttcccc ctatttgtgg
     4501 tgtctcgggt cttattattt tatggcaaat atcgatatca tctggagttc taatatcgct
     4561 aaaaagaata gatttaaaac ctgccccaag cgctgcctga gcccaaaatc cttgactttc
     4621 ttggtctaac tttatcatca atgggagatt agcacactgt gctgcacgag ccatatgata
     4681 taaattattc at
//
LOCUS       DPUP01000062            3981 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8258,
            whole genome shotgun sequence.
ACCESSION   DPUP01000062 DPUP01000000
VERSION     DPUP01000062.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3981)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3981)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3981
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            2..847
                     /locus_tag="DHV98_02090"
     CDS             2..847
                     /locus_tag="DHV98_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013188121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HCK05173.1"
                     /translation="MDDKPPRLKKTSLVRVPIRLGADVFLNGAISKVSIDRMIDAMSA
                     YGLLLKNHNVLRYRACATSAMREASNGAEVVARIREATGIQIEIIDGEIEADLIAATD
                     FGHFIGTEKAFLYVDVGGGSTEFTLYSEGRVIVSRSFKLGTVRILNDMVRESMWDEVQ
                     AWITEVTAGYDKINVIGSGGNINSIYTNSGKKLGKPLSYFFLVNYFELLKSMTYHERI
                     YELEMNPDRADVIIPATKIYLSAMKWSRAKNIYVPKIGLADGMVKRMYQDSTQGHDLK
                     TLFED"
     gene            complement(848..>1074)
                     /locus_tag="DHV98_02095"
     CDS             complement(848..>1074)
                     /locus_tag="DHV98_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013871266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA 2-methylthio-N6-isopentenyl adenosine(37)
                     hydroxylase MiaE"
                     /protein_id="HCK05174.1"
                     /translation="SCERFRLLSEELEDKKLADFYRKLMISEANHYTMFLKFARQYGQ
                     REVVDQKWKDLLEFEAQIMKDLSKTELIHG"
     assembly_gap    1075..1280
                     /estimated_length=206
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1281..1642)
                     /locus_tag="DHV98_02100"
     CDS             complement(<1281..1642)
                     /locus_tag="DHV98_02100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013307660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-methylthio-N6-isopentenyl adenosine(37)
                     hydroxylase MiaE"
                     /protein_id="HCK05175.1"
                     /translation="MLGLKLPTDPRWVNIVAKNIDEILTDHAYCEQKAASTAISLIIG
                     YPGYTELVAEMTLLAQEEMSHFKMVHDRIIERGGHLGRERKDAYVNTLMKFFPKGGSR
                     NDQLIHRLLYAALIEARS"
     gene            complement(1678..3567)
                     /gene="dnaX"
                     /locus_tag="DHV98_02105"
                     /pseudo
     CDS             complement(1678..3567)
                     /gene="dnaX"
                     /locus_tag="DHV98_02105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008615852.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
     assembly_gap    2926..3005
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    3568..3706
                     /estimated_length=139
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          903 a          750 c          849 g         1054 t
ORIGIN      
        1 gatggatgac aaaccccctc ggttaaaaaa aacctctttg gtacgcgtcc ctattcgatt
       61 gggagccgat gtgtttttaa atggcgctat ttcaaaagtc agtattgatc gaatgatcga
      121 cgccatgagt gcctatggat tattgctaaa aaatcacaat gtattgcgct atcgagcttg
      181 cgcgacttcg gccatgcgtg aggcgagtaa cggggcagaa gttgttgcac ggatccgtga
      241 agctacggga attcagattg aaatcattga tggggagata gaagctgatc ttattgccgc
      301 cactgatttt ggtcatttta ttgggactga aaaagctttt ttatatgtag atgtcggtgg
      361 agggagtaca gaatttaccc tttatagtga aggccgtgtt atcgtttcac gctcgtttaa
      421 gctcggaacg gttcgcattc taaacgatat ggtccgcgag tctatgtggg atgaagtaca
      481 ggcttggatc acagaggtta ctgcaggata tgacaaaatc aatgtgatcg gttctggagg
      541 aaacatcaat agcatttaca ccaatagcgg taagaaactg ggcaagccac tgagctattt
      601 tttcttggtg aattattttg agctgctaaa atcgatgacc tatcacgaga gaatctacga
      661 attagagatg aatcccgatc gtgccgatgt gattattccg gcgactaaaa tttacttgtc
      721 ggccatgaaa tggagtcgtg cgaaaaacat ttatgttccg aagataggat tggccgatgg
      781 catggtcaaa cgcatgtacc aagattcaac tcaaggacac gaccttaaga ccctttttga
      841 ggattaatta accgtgaatg agctctgttt tgctcagatc tttcataatc tgagcttcaa
      901 attctaagag gtccttccac ttttgatcca cgacctctct ttgaccatat tggcgcgcaa
      961 acttcaggaa catggtgtaa tgattcgctt cactgatcat caatttgcga taaaaatcgg
     1021 ctaacttttt gtcttcgagt tcctcgctta ataatcgaaa gcgctcgcaa cttcnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn caacttctgg cttctatcag cgcggcataa agtaagcggt
     1321 ggatgagttg atcattacga ctgccgcctt tagggaaaaa cttcattaac gtattgacat
     1381 aggcgtcttt gcgctcgcgt ccgagatgtc cgccacgctc tataattcga tcatgaacca
     1441 ttttgaaatg actcatttct tcttgagcga gcagcgtcat ttcagcgacc agttccgtgt
     1501 atccaggata gccaatgatc aatgaaatcg ccgtcgatgc cgctttttgt tcacaatagg
     1561 cgtgatcggt taatatttca tctatgtttt ttgcgactat attgacccag cgtggatccg
     1621 tgggtaattt tagtcccaac atcgcggact gattcgtttg actcattttt taattcatta
     1681 aacatcaaga tctaaactgc tgcgcaagac atcgagtagt gggttttgtt ctttgagctg
     1741 cgcgtatttt tcttctgggg tgtacgcata acgcttaacg gcgctttcca cgacagtaat
     1801 ttttatttta agatgatcgt tttcgagttc attggctaag aaagccaaaa gtgtaccttg
     1861 atcgcgttcc acttcgagcc gtatggtgtc attggggtag gtcaataaaa tatcagttcc
     1921 tttaagcact ggtgtttcca tggtcaaatg cgagtgcaaa ttgaactttc cttcttcttt
     1981 gatctgattg gcgaaggtat tccaggccga taaaaacgat tcagcgttaa attctttatt
     2041 tcgttttacc ccaggagccg gtcctgaagc cttttgctgg gcttgaaggt gtcttttttc
     2101 ttgaatgctt ttaagagaaa gcgacgaaac tccggctctc acgccttcaa ttttgaggtc
     2161 aatttttcgc ggcttgtcgg gctttgcccc tcgatcgggc gctcctcggg ctggctccgc
     2221 ttcggctgtt ggagcagatt ccgggctagc ggggcttttt ggttcatcca cgacagggat
     2281 ttcgggttca gcgacaactg aggccacagg gtcagtctct acagaggctt cgggttcagc
     2341 cacagcagtg gctgcaggct caactacggc tcgggccttt aatttgcgcg ccgggattat
     2401 atagggttgg ttagtgggct tttttttttg ctctaaatca tttagagaag cgagctgcat
     2461 caggcataat tcgaccagta aacgcggatt tcggctgttt ctgtaactta acgcgcactg
     2521 attggcaata tctaaggcgc tcaggagcca ggaacgatca gcggcttggg attgtcttgc
     2581 gtaatcttgt tttacatttt ctccgacctc cagaagacga atcgtttgtg gtgtttgggc
     2641 cactaataaa tctctgaaat gggaacataa cccattgata aagtgttgtc catcaaaacc
     2701 ttgtgcgaga atttcatcga gttgtaacag taggtcagga atacttcctt gtagcatcaa
     2761 atcagtaatg ctgaagtagc aagcataatc gagaatatgc aagttttcgg ccactgcagt
     2821 tctgctgatc ttatggccac aaaaactgac gattcggtca aagattgaaa gcgcatcacg
     2881 catcgcgcca tcggctttta acgccatcaa atgcagcgca tcatcnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnngcctt cggcttgagc cacaaattgt aattgttctt tgatatcttc cacggtgatg
     3061 cgtttgaagt caaatatttg acaacgcgac aatatggtgg ggataatttt gtgcttttct
     3121 gtggtggcca aaataaatat ggcatgagca ggcggctcct caagggtctt tagaaaagca
     3181 ttaaaagcag ccgaggaaag catgtgtacc tcatcaataa tatacacctt aaaacgacct
     3241 gtctgcgggg gaatgcggac ttggtcgatc aaggatctga tgtcctctac ggagttgttt
     3301 gaggcggcat caagctcaaa aatattaaaa gcaaagtctt cgtctgggtg cgccgcagtg
     3361 ttttgttgat cggcactgtc ttggttaatt ttttttgcca ggattcgggc acaggtcgtt
     3421 ttaccgaccc cacggggtcc tgtaaacaac agggcttgcg ctaagtgatt gttgcttatg
     3481 gcattctcta aggtgcgggt aatggacttt tgtcccacca cttgatcaaa cccttgtggt
     3541 ctgtactttc tcgctgatac tacaaagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnaaag tgttccataa
     3721 tgccttaaca aatataaaaa gccccttttt gaatttcctg aattcagttt gtattatttc
     3781 gtgagttatc aacatttctg ctaattttgt cgcgcaggcc gccttatcgc ttcatctttg
     3841 gatgaagagg aaagtccggg caccacaggg aagcatagcg gctaacagcc gtcggttcgc
     3901 gcaggcgaat taggaccagt gcaacagaaa gaatgtacag gtaatgctgt agtgaaatca
     3961 ggtaaactct atgcggtgaa a
//
LOCUS       DPUP01000063            6056 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16270,
            whole genome shotgun sequence.
ACCESSION   DPUP01000063 DPUP01000000
VERSION     DPUP01000063.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..577
                     /locus_tag="DHV98_02110"
     CDS             <1..577
                     /locus_tag="DHV98_02110"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00905.20,HMM:PF03793.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HCK05176.1"
                     /translation="LSDQTLSEVRDVLEHIVTRGTGRALYSEHFSIAGKTGTARTEYW
                     MEDWDKDRRYISSFAGYFPAEDPKYSCIVVIHKPSTKKGYYGADVTGPVFKRIAQKIY
                     TDSPLRDTIQLPVKPMPELMQQEAQITQMLNETPEGLPDVRGWALMDALAVLENLGLT
                     VEVRGRGSIMEQSPKPGTALGQTQKVTLIGS"
     gene            574..2037
                     /locus_tag="DHV98_02115"
     CDS             574..2037
                     /locus_tag="DHV98_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HCK05177.1"
                     /translation="MILLKDILYRVGIEQVVGSTAVAVRGVEFDSRRVALNDVFVAIK
                     GALVDGHQFIKQACDQGAIAIICEQFPEMIINGITYVQVRDASAALAYIADNFYEQPA
                     KDLVLVGVTGTNGKTTVATLLHQLFTKMGYAAGLLSTVENKIGHEIIPSTHTTPDSLT
                     INRLLRQMVDAGLTHCFMEVSSHGIDQNRTLGLDFDGGIFTNLTHDHLDYHKDFKTYR
                     DVKKRFFDGLKSQAFALTNQDDKNGGFMLQNTKARVQTYAQKSLADFKVQVLEQQISG
                     QLLKIDGQEVWVKLIGGFNAYNLLAIYACGILLEVDPISVLQQISTLESVSGRFQYYV
                     APNGVTVIVDYAHTPDALENVLGTIAGIRTGNETLITVVGCGGDRDKTKRPKMAAVAT
                     HWSNKVIFTSDNPRSEPAEEIISQMESGVPAHDYKKFVSITDRRQAIKTAVQMAASGD
                     LILIAGKGHETYQEISGVRHDFDDYKIASEFLNDQTA"
     gene            2039..3342
                     /locus_tag="DHV98_02120"
                     /pseudo
     CDS             2039..3342
                     /locus_tag="DHV98_02120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387922.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
     assembly_gap    2684..2768
                     /estimated_length=85
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3342..4682
                     /gene="murD"
                     /locus_tag="DHV98_02125"
     CDS             3342..4682
                     /gene="murD"
                     /locus_tag="DHV98_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HCK05178.1"
                     /translation="MAQEKLVILGAGESGQGAALLGKAKGYKVFVSDGKTLTEKARRL
                     FEQHQIDFEEAGHDPSRLVDADIAVKSPGIPDSAAVVQTLLTHGVEVISEIEWGFRFT
                     EKPIIAITGSNGKTTTTSMIHKLLLDAGISAGLGGNIGKSFAAQVMGQEPDYYVLEVS
                     SFQLDGTTQFQPHIAVITNITPDHLDRYNYKFEAYIASKMSIARCQTSQDFLVYDHDD
                     VVLTQSISQAPVKANLMPYSTKTAVGQGSYIDHDTLIINTPENSINMPTLDLSVQGAH
                     NQKNAMAAATVGALLNIRKETIRESLEHFQSVEHRLEYVLKINNVTYINDSKATNVNS
                     VYYALESMHAPTVWIVGGQDKGNDYKELLPLVNEKVKAIICLGLDNDKIIQTFGSVVD
                     MLVETHRMQDAVQVAYRLAQRGDTVLLSPACASFDLFDNYEDRGRQFKNAVRQL"
     gene            4696..5895
                     /locus_tag="DHV98_02130"
     CDS             4696..5895
                     /locus_tag="DHV98_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010180428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HCK05179.1"
                     /translation="MQQFIQNIKGDRSIWAVVALLALFSFMPVYSASSNLAYLYGDGN
                     TLQFLIKHLAHLTLGFVILFGVHRIPYHYFKGLSMIALPIMTILLILTLAQGTTIEGA
                     NAARWIKLPVVGVTFQTSSLASVALLVYVARYMARIKDEQVSFKQTIWPLWIPVFMVI
                     GLILPANLSTALLIFAMVIMLVFVAGHPIKYIASILGIGLLSLTLFILSAKAFPGLFP
                     NRVDTWTSRIESFLTDEVDAKEKDYQITQANIAIATGGMMGLGPGKSIQKNFLPQSSS
                     DFIYAIIIEEFGLVGGLSLLFFYLFLLFRLVVLVFKTSDYFGRLLVIGLGVPLLFQAF
                     INMGVAVSLFPVTGQTLPLISSGGTSIWTTCVALGVILSVSAHRKDKIETNEPSSNPL
                     DILSETI"
     gene            5882..>6056
                     /locus_tag="DHV98_02135"
     CDS             5882..>6056
                     /locus_tag="DHV98_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013998222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--N-acetylmuramyl-
                     (pentapeptide) pyrophosphoryl-undecaprenol
                     N-acetylglucosamine transferase"
                     /protein_id="HCK05180.1"
                     /translation="MKRFRYMISGGGTGGHIYPAIAIAQEIMRRNPEAEIMFVGARDR
                     MEMQKVPQAGFPIR"
BASE COUNT         1579 a         1194 c         1471 g         1727 t
ORIGIN      
        1 cttgtctgat caaactttga gtgaagtacg cgatgttttg gaacatatcg tcacgcgggg
       61 aacggggcgt gccctgtact cggagcattt ttcaatagcg gggaaaacag ggaccgccag
      121 aacggaatat tggatggagg attgggataa agatcgacga tacatctcct cttttgcggg
      181 gtactttccg gcagaggacc ccaagtattc ctgtattgtc gtaattcaca agcccagcac
      241 caaaaaaggg tattacgggg cagatgtcac gggtcctgtg ttcaagcgta tcgctcagaa
      301 aatctatacg gacagtccct tacgcgatac gattcaatta cccgtaaagc ccatgcctga
      361 gttaatgcag caagaggctc aaatcaccca aatgctcaat gaaacccctg agggccttcc
      421 cgatgttcgt ggttgggctt taatggatgc attggctgtt ttagaaaatt taggattgac
      481 tgtcgaagtg cgggggcgtg gttcgattat ggaacaaagt cccaaaccag gaactgcgct
      541 aggacaaact caaaaagtaa cactcatcgg ttcatgatat tacttaaaga catattgtat
      601 cgtgtgggga tagagcaggt tgttggttct accgcagttg ctgtgcgtgg tgtagaattt
      661 gactcaagac gcgtggcctt aaacgatgtt tttgtcgcca taaaaggggc tttagtcgat
      721 ggccatcaat ttattaagca agcttgtgat caaggggcaa tagccataat ttgtgagcag
      781 ttccccgaaa tgattatcaa tgggattacc tatgttcagg tgcgcgatgc cagcgccgcc
      841 ttggcctata ttgccgacaa tttttacgag cagcccgcga aggatttggt cttggtgggg
      901 gtaaccggga ccaatgggaa gactacggta gcgactttgt tgcatcaatt gttcacgaag
      961 atggggtatg ccgcgggctt actgtccacg gtagaaaaca aaattggcca tgaaatcatt
     1021 ccctcaacgc ataccacacc agactcattg accattaatc gtttgttgcg gcaaatggtc
     1081 gatgctgggc tgacccattg ctttatggag gtgagttctc atggaattga tcaaaataga
     1141 accttaggtc ttgattttga cggaggtata tttaccaatc tgacccacga tcatctggat
     1201 tatcacaagg acttcaaaac ctaccgagat gtaaaaaaac gtttttttga cggccttaaa
     1261 tctcaagctt ttgccctgac gaatcaggat gataaaaatg ggggattcat gctgcaaaat
     1321 accaaagccc gggtgcagac ttacgctcag aaatctttag cagattttaa ggtccaggtt
     1381 ttggagcagc agataagcgg acaattgctt aaaatcgacg gacaggaggt ttgggtaaaa
     1441 cttatcgggg gatttaatgc ctacaattta ctggctattt atgcctgtgg gatcctgctt
     1501 gaggtcgacc ctataagcgt cttgcagcag atcagtactt tggaaagtgt ctcagggcga
     1561 tttcaatatt atgtcgcgcc caatggggta acggtcattg ttgattatgc ccatacgcct
     1621 gatgccttgg aaaatgtatt gggaacgata gcagggatac gcaccggaaa tgaaaccctg
     1681 attacggtgg tgggttgcgg aggcgatcgc gataagacta aacgaccaaa aatggctgct
     1741 gtagccacgc attggagcaa taaagtcatt ttcacctcag ataacccacg cagcgagcct
     1801 gcagaggaaa taatctccca aatggagtcg ggagttcctg cgcacgatta caaaaagttt
     1861 gtgtctataa ctgatcggcg tcaagcgatt aagactgcgg tgcaaatggc ggcgtctggt
     1921 gatttgatat tgattgcggg gaaggggcat gagacctacc aagaaatttc tggagtgcgt
     1981 catgactttg atgactataa aatcgcaagt gaatttttaa acgaccaaac cgcctgatat
     2041 gctgtattac ttattcgatt ttttagataa aacctatgat gtgcccgggg ctggattatt
     2101 tcagtttatc acttttaggg cggccatgac ggccattacc tcattgttta ttgcaactta
     2161 ttttggccga agaatcatcg aatttttaca gcgtaaacag gttggggaaa ccattaggga
     2221 attgggttta gaaggtcaat cacaaaaggc aggaactccg actatgggtg gggtgattat
     2281 cattttggcc attgtggttc ccgtattgct ttttgccaag ctggacaata tttacgtcat
     2341 catgttattg gtaacgacga tttggatggg ggttattggg tttatcgatg actatatcaa
     2401 aaagttcaaa caagacaaag acggacttcc aggaaaattt aaggtatttg gccaaattgg
     2461 tctgggtatt attgtcgggg gaaccatgta tctgagcgat caagtgacgg tgcgtcgtca
     2521 gattcctgcg gggatggagc taagtcagct atcgtctgat caaggccaag ccagtggtga
     2581 tcgcgatata tccaaagcat tttatccagc agagaaggca ctcatcacga ccatgccttt
     2641 tgtgaaaaac aatgaaattg attacgagaa ggttttgtct tggnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnta ttccgatcat catttttatc attacggcag tctccaatgg ggctaatctt
     2821 accgatggga tcgatggttt agcggcgggg acttcagcca ttattggggt cactttggcc
     2881 atatttgcgt ggatttcagg gaaccttatt ttttcggatt acctgaacat tatgtatatc
     2941 cccaatatcg gcgagctttc catttttatt atggcttttg ttggggcact cattggcttt
     3001 ttatggtaca acgcttatcc tgctcaggtt tttatggggg atacagggag tttgaccata
     3061 ggcgggatca tcgcggttat cgctattgcc atccgcaagg aatggttgat cccaatttta
     3121 tgcgggattt ttcttatgga aaatttatct gtggtacttc aggttggatg gttcaaatac
     3181 acaaaaaaac gcacaggaac gggcatgcgc ttgtttaaaa tggctcctct gcaccatcat
     3241 tatcaagtca aaggatacca cgaaagtaaa attgtaactc gattttggat tgtgggaatt
     3301 gttctggctg tattgaccat tgtaacccta aaaatacgct aatggcacaa gagaaactcg
     3361 ttatactcgg cgcaggtgag agcggacagg gagcggcatt actcggtaaa gccaagggct
     3421 ataaggtttt cgtttccgat ggcaaaaccc taaccgaaaa agcgcgcagg ctttttgagc
     3481 agcatcaaat agattttgaa gaggcaggac atgatccgtc ccgtttggtc gatgcagata
     3541 ttgcggttaa gagtcctgga atccctgact ctgccgcagt ggttcaaacg ctgttgactc
     3601 atggcgttga ggttatttcc gagatagaat gggggtttcg ctttactgaa aaacccatta
     3661 ttgccattac aggaagtaat ggaaaaacca ccacgacttc tatgattcat aaactgcttt
     3721 tggatgcggg aatatcggcg ggacttggcg ggaatattgg gaaaagtttc gcggcgcaag
     3781 ttatgggaca ggaacccgat tattacgttt tagaggtcag tagttttcag ctcgatggga
     3841 ccactcaatt tcagccccat attgcggtga taaccaacat tactcccgat catttggatc
     3901 gctataatta taagtttgag gcttatatcg cctcaaaaat gagtattgcg cgatgtcaaa
     3961 cctcacaaga ttttttggtc tatgaccatg acgatgttgt gttgacacaa tcgatcagtc
     4021 aggcgccggt aaaggcaaat ctgatgccct attctaccaa gactgctgtg ggtcaaggca
     4081 gttatattga ccacgacact ttaattatta acaccccaga aaattcaata aatatgccaa
     4141 cacttgatct ttccgtccaa ggagctcaca atcagaaaaa cgctatggcg gcggctactg
     4201 ttggagcact attaaatatt cgcaaagaaa caattaggga atcgttggaa cactttcagt
     4261 ctgttgaaca cagactggaa tacgtcttaa aaattaacaa tgtaacctat atcaatgatt
     4321 caaaggcgac taatgtaaat tcggtctatt atgcgctcga aagcatgcat gcgcccaccg
     4381 tatggattgt cggtggtcag gacaaaggaa atgattataa ggaattgttg cctttggtta
     4441 acgaaaaggt caaggccatt atttgtcttg gattagacaa tgacaaaatc attcagactt
     4501 ttggttctgt agtggatatg ctcgtagaga cgcatcgaat gcaggatgcg gttcaagtgg
     4561 cctatcgact tgcccagcgc ggggatacgg ttttgttgtc tccggcttgt gccagttttg
     4621 atttatttga caattatgag gatagaggcc gtcaatttaa aaatgcagtg agacaattat
     4681 agggggtaaa gcattatgca acagtttatt caaaacataa aaggtgatcg ctccatttgg
     4741 gccgttgtgg ctttattggc cctattttct tttatgcctg tttacagtgc aagcagcaat
     4801 ttggcttatc tctacggcga tggcaatacc cttcagtttt tgattaaaca cttagctcat
     4861 ttgaccttag gctttgtgat tttatttggt gttcatcgta ttccttatca ttatttcaaa
     4921 ggactttcaa tgattgcctt gcccataatg acgattttac tcattctgac tttggcccaa
     4981 gggacaacca tagagggggc taatgcggcg cgatggataa agcttcctgt agtgggggtt
     5041 acttttcaaa cctcttcttt ggcctctgtg gcattgctgg tctacgtggc ccgttatatg
     5101 gcgcgtatca aggacgagca ggtgtctttc aaacaaacaa tctggcctct atggattccc
     5161 gtatttatgg tcattggttt gatcttgccg gccaatttat ctacggcatt actcatcttt
     5221 gccatggtta taatgctggt gtttgtcgca gggcatccca taaaatatat tgcctctatt
     5281 ctcggtatag ggctccttag tttgaccctt tttatattat cggccaaagc cttcccgggt
     5341 ttattcccga atcgtgtcga tacatggacc agtcggattg agagtttttt gaccgacgag
     5401 gttgatgcca aagagaagga ctatcagatt actcaagcca atatcgctat tgcgaccgga
     5461 gggatgatgg gattgggtcc tggaaaaagt attcagaaga attttttacc ccaatccagt
     5521 tcggatttta tttacgccat cattatcgaa gaatttggac tagtgggggg gttatcctta
     5581 ctcttctttt atctgttttt attatttcgc ttggtggtct tggtattcaa aacctccgat
     5641 tattttggtc gtcttttggt gatcggtctc ggggtgcctt tgctgtttca agcgtttatt
     5701 aacatgggcg ttgcggtctc tctttttcct gttacgggac aaaccttacc cctgattagt
     5761 agtgggggaa cctctatttg gacgacctgt gttgcccttg gagtcatttt gagtgtgagc
     5821 gctcatcgca aagataaaat agagaccaac gagccgtcgt ctaacccttt agatattctc
     5881 agtgaaacga tttagataca tgatatcggg tggaggcaca ggggggcata tttatcctgc
     5941 catcgctatt gcgcaagaaa tcatgcggcg caatccggag gctgaaatca tgtttgtagg
     6001 ggcgcgcgac cgaatggaaa tgcaaaaggt gcctcaagca ggatttccca ttagag
//
LOCUS       DPUP01000064            3707 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_18292,
            whole genome shotgun sequence.
ACCESSION   DPUP01000064 DPUP01000000
VERSION     DPUP01000064.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..867
                     /locus_tag="DHV98_02140"
     CDS             <1..867
                     /locus_tag="DHV98_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019599184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HCK05181.1"
                     /translation="VPVIKGTKSANERFAGALETYCIEAMMQDGKALQAGTSHFLGQN
                     FAKAFDVKFSDKDGSLNHVWATSWGVSTRLVGALIMTHSDDNGLVLPPKLAPDQVVIV
                     PIYRTDQQYADTVAKGQEIAQLLRQKGIRVKLDARDTHKPGWKFNEYELKGVPIRIAL
                     GPKDLENNTIEVARRDTLSKELISQAEAVDYIVTLLDTIQENLFQKAMEMRVSLTHEA
                     EDYEQFKRLLEEKGGFVWAHWDGTTETEERIKAETKATIRCIPLDGPVTPGKCILTGK
                     NSSRKVLFARAY"
     gene            945..1019
                     /locus_tag="DHV98_02145"
     tRNA            945..1019
                     /locus_tag="DHV98_02145"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:978..980,aa:Glu,seq:ttc)
     gene            1037..1288
                     /locus_tag="DHV98_02150"
     CDS             1037..1288
                     /locus_tag="DHV98_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HCK05182.1"
                     /translation="MANHKSALKRIRSNEAKRLLNRYKHKTARNAMKKLRETSEKSEA
                     EKLLPEVTSMLDKLAKKNIIHANKAANLKSSLTKFVAAL"
     assembly_gap    1371..1401
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1402..1803)
                     /locus_tag="DHV98_02155"
     CDS             complement(<1402..1803)
                     /locus_tag="DHV98_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002677379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HCK05183.1"
                     /translation="MKRAIFPGSFDPFTRGHLSIVMRALPLFDHILIAVGHNRDKTPM
                     NPIDQRLKILEQLFKNESKISITQYSGLTMDFCKKQQAQFIVRGLRNAQDFNYEQPIA
                     QTNLALGGIETIFISSEPQLSHMSSTIARDIA"
     gene            complement(1800..2810)
                     /locus_tag="DHV98_02160"
     CDS             complement(1800..2810)
                     /locus_tag="DHV98_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015361186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HCK05184.1"
                     /translation="MTQQRPKISVMVLMGGYTSEFGISLKSGGVVCEELDRTKYDVYP
                     CIVTKDQWYYQETPLLKHPVNPGSLTITKGDQIILPDVVFNTIHGSPGEDGYIAALCE
                     LLNIPQTSTHFYAAALSFNKRDCLSVLKAHGIPCAASIYCDSVHPPQFKEVSEKLGLP
                     FFVKPNRSGSSYGVSKVNLEKDYQKALETAFAEDHQILIERALSGVEISVGAYSHQGK
                     PIILTPTEIVSENEFFDLSAKYEGKAQEITPARINEETVLRAQKLVRKIYTLLEMRGA
                     CRADFIVENGQPYFIELNSTPGLSKESLIPQQAKYSGLSLKDFFDRLIQEAMNQQKTT
                     QL"
     assembly_gap    2998..3108
                     /estimated_length=111
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3116..3601
                     /locus_tag="DHV98_02165"
     CDS             3116..3601
                     /locus_tag="DHV98_02165"
                     /inference="COORDINATES: protein motif:HMM:PF03793.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HCK05185.1"
                     /translation="MPDLSGMTLEEALRALEEHQLSHAILDTTSYNPNFAYQTVIEQI
                     PASGSFVKQARKIYLSINRSGYKMTQVPFVVGKTLRQAQPALRSAGFTVGKLTYKKYI
                     AKDEVLSMKFRQRNLEQGDQLPLTSIIDLELGDGTGGFEIEALDRDSPLHSSYRKRDT
                     L"
BASE COUNT         1034 a          685 c          792 g         1054 t
ORIGIN      
        1 gttcctgtaa taaaaggcac aaaatctgcg aatgaacgat ttgcaggggc tctagagacc
       61 tattgtattg aggccatgat gcaagacgga aaggcactac aagccggaac ctcacatttt
      121 ttaggacaaa attttgcaaa ggcttttgac gtaaaatttt cggataaaga cggatctctg
      181 aatcacgttt gggccacttc ttggggagtt tcaacgcgtc ttgtgggcgc gctaatcatg
      241 acgcacagtg acgataacgg gttggttctt ccgccaaaac tcgccccaga tcaagtggtt
      301 attgtgccga tatacagaac cgatcaacaa tatgctgata cggttgcaaa aggtcaagag
      361 atcgctcaat tattgcgtca aaagggtatt cgcgttaaat tggatgctcg cgatacacac
      421 aagccaggat ggaagttcaa tgagtatgag ctaaaaggtg ttcccattcg aatcgccctt
      481 gggccaaaag atctagaaaa taataccatt gaggttgctc gccgagacac cttatccaaa
      541 gaactaattt cgcaagctga agcagtggat tacattgtta ctttgcttga cacgatacaa
      601 gagaatttgt tccaaaaggc aatggagatg cgtgtgtctt tgacccatga agctgaggat
      661 tatgagcaat ttaagcgttt attagaagaa aaaggtggtt tcgtttgggc ccattgggat
      721 gggactactg aaactgagga gcgtataaag gctgagacga aagcgaccat acgttgtatt
      781 ccccttgacg ggcctgttac cccgggtaag tgtatcttga cgggtaaaaa ttcctcgcga
      841 aaagtgttgt tcgccagagc atattagatt tttttgaaaa ataaaatgca ttacttgcgg
      901 catttaaaaa atgttgtatt tttgcatccg cattttgaat taacggccca ttcgtctagt
      961 ggttaggacg caaggttttc atccttgaaa caggagttcg attctcctat gggctacaaa
     1021 aattaacaaa gagattatgg caaatcataa atcagcttta aagagaatta gaagcaacga
     1081 agcaaaacgc ttattaaacc gttacaagca taaaactgcg cgtaatgcaa tgaagaagct
     1141 tcgtgaaaca agcgaaaaat cagaggctga aaaattactg cctgaggtaa cttcaatgtt
     1201 agataaattg gcaaagaaaa atatcattca tgccaataaa gccgctaacc taaagtctag
     1261 cctcacgaaa tttgtcgctg cactttaagc gacatagtcg tgttcgagat acaaggcctt
     1321 catgtttgtc atgaaggctt tttttattga ggtatttctg gggtaaatgg nnnnnnnnnn
     1381 nnnnnnnnnn nnnnnnnnnn ntgcaatgtc tctcgctata gtgctggaca tatgactcag
     1441 ttgcggctct gaagaaataa aaattgtttc tattcccccg agtgccaaat ttgtttgagc
     1501 aatgggctgt tcataattaa aatcttgtgc attacgtaag cctcgaacaa taaattgggc
     1561 ttgttgtttt ttacaaaaat ccatagtcag gcctgagtac tgcgtgatcg aaatttttga
     1621 ttcattttta aagagttgct caagaatttt aaggcgttga tcaatcgggt tcatgggggt
     1681 tttatcccta ttatggccca ccgcaattag gatgtggtca aaaagcggga gggcccgcat
     1741 cacgatggat aaatgtcccc gcgtgaaagg atcaaaggat ccggggaaga tggcacgttt
     1801 cataattgag tggttttttg ctgattcatg gcctcttgta tgagacgatc aaaaaaatct
     1861 tttaagctga gtcctgaata ttttgcttgc tgaggaatga ggctttcttt ggataaacct
     1921 ggggtcgaat taagttctat aaaatagggc tgtccgtttt cgacgataaa gtctgcgcga
     1981 caggcgcctc tcatctctaa gagggtataa attttacgca ctaatttttg cgccctaagg
     2041 acagtttctt cgttaattct tgcaggagtt atttcttgag ctttgccttc gtattttgcg
     2101 ctcaaatcaa aaaattcatt ttccgatact atttctgtag gggtaagaat aattggtttt
     2161 ccttggtggc tgtaagcacc aacggatatt tctacgccgc ttagggcgcg ttcgataagt
     2221 atttgatggt cttctgcaaa agcagtttct aatgcctttt ggtagtcctt ctccaaatta
     2281 accttactca cgccataact cgagccagaa cgatttggtt ttacaaaaaa gggaaggccg
     2341 agtttttctg atacttcctt gaattgtggc ggatgaactg aatcacaata aatagatgct
     2401 gcacaaggga taccatgagc cttaagcaca gaaaggcagt ctcttttgtt aaaactcagg
     2461 gcagcagcgt aaaaatgggt gcttgtttgt ggaatattca gtaattcaca aagggcggcg
     2521 atgtagccat cttcacctgg gctaccatga atggtattaa aaacgacatc cggtagaatt
     2581 atttgatcac ccttagtaat ggtgagactt cctgggttca cggggtgctt tagcagaggg
     2641 gtttcttgat aataccactg gtcttttgtc acgatacagg gataaacgtc atacttggtt
     2701 cgatccaatt cttcacatac aacaccacct gacttaaggc ttatgccaaa ttcactggtg
     2761 tacccaccca ttaaaaccat cacagaaatc tttggccgtt gctgagtcat agaaaaataa
     2821 ttacttcccg cattaaactt actaaattta cgtttagtat ttttgtgatt cttcctaaaa
     2881 cactcatgag tttaattcgt tttgtttttt cacgcatttt tttgaagcaa ctattattta
     2941 tgctgttgtt tctgtttgcc cttgtatccg ctttactttt ttggttggat agcaatannn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa ttgaggtgcc
     3121 tgatttgagc ggtatgacct tggaagaggc cttaagagcg cttgaggagc atcaattgtc
     3181 ccatgcgatt ttagacacga cgagttacaa cccgaatttt gcctatcaaa ccgttattga
     3241 acaaatcccg gcttcgggtt cctttgtaaa gcaagcgcgt aaaatttatt tatcgattaa
     3301 tcgatctgga tacaaaatga ctcaggttcc ttttgtcgtt ggaaaaacat tgcgacaagc
     3361 ccagcccgct ttgcgttctg ctggttttac ggttggtaaa ttaacataca aaaaatacat
     3421 tgccaaagat gaggtcctga gtatgaaatt tcgtcaacga aatcttgagc aaggagatca
     3481 actgcccctg acctcgataa ttgatttgga acttggtgat gggacagggg gatttgagat
     3541 agaagcccta gatcgagatt cgccattgca ctcgtcttat agaaaacgag acactttgta
     3601 acacaaaatt atgaccgacg atattgattc tgttgaccca ctagaccagc aagacgattt
     3661 gcacgaacat tatcgatttg ttgcagataa agggcagcag ccgctta
//
LOCUS       DPUP01000065            4611 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_28882,
            whole genome shotgun sequence.
ACCESSION   DPUP01000065 DPUP01000000
VERSION     DPUP01000065.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4611)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4611)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>451)
                     /locus_tag="DHV98_02170"
     CDS             complement(<1..>451)
                     /locus_tag="DHV98_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCK05186.1"
                     /translation="QYRNFGMANPEGYRKALRLMKSAEKFNLPVVALIDTPGAYPGLE
                     AEERGQGEAIARNILEMTRLQVPIIVVIIGEGASGGALGIGVGDRVLMLENTWYSVIS
                     PESCSSILWRSWEYKEQAAEALKLTATDMKKLALIDEIVKEPLGGAHM"
     assembly_gap    452..691
                     /estimated_length=240
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<692..1081)
                     /locus_tag="DHV98_02175"
     CDS             complement(<692..1081)
                     /locus_tag="DHV98_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HCK05187.1"
                     /translation="MEYLDFELPIKELQEQYNKACQIGADSDVDVSNTCKQIEKKLTA
                     TKKEIYKNLTPWQRVQLSRHPDRPYTMDYIRAICGESFLELHGDRGFKDDKAMIGGLG
                     KIGEQSFMIIGQQKGYNTKTRQYRNFGM"
     gene            complement(1147..2010)
                     /locus_tag="DHV98_02180"
     CDS             complement(1147..2010)
                     /locus_tag="DHV98_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013551302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCK05188.1"
                     /translation="MHLHFIVLIWGFTAVLGALISLEAISLVWFRMSIAAIAVLIFMV
                     TTGRWKRPSVKSLWKMCGLGLALALHWLTFFGAIKISNVSVTLSVMATGAFFAAFLEP
                     LIFGRPMNWREVLLGLFAVFGLGIIFHASTEYVWGIVLALISAFLSALFSVFNGRLVQ
                     ENSATTISFFELSFGVLGISLYLFFTDAFNSAFFDLSLSDWFYLIILATICTAYAFIA
                     SVNLMKWITPFTLMLTINLEPVYGILLALVVFGDAEYMSATFYIGAAIILGTVLVNAY
                     FKAKRRRKYPQ"
     assembly_gap    2035..2107
                     /estimated_length=73
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2108..>2401)
                     /locus_tag="DHV98_02185"
     CDS             complement(<2108..>2401)
                     /locus_tag="DHV98_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011921562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05189.1"
                     /translation="KGSNFINRYEVVRYKRWSLPVSAYILTIIAVAVSSIKRRGGMGV
                     NLAIGIGVGMIYVFFDKIFGTMAEQSTFSPFVATWFPNFVFGVLAYFLLRNAK"
     assembly_gap    2402..2514
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2515..3273)
                     /locus_tag="DHV98_02190"
     CDS             complement(<2515..3273)
                     /locus_tag="DHV98_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05190.1"
                     /translation="MSLLDRYIIGKYLGTFGLLLLLFVPIGILVNLADKIDKILANEV
                     PFIEVAKYYAHFTVYFANLLFPLFLFLSTIWFTSKLANNTEVIAFLSSGVSYTRFLRP
                     YLIGATVVCVMAFFLANYLAPYSSKKYNEFSYEYLNKRRGKDRERANVYRQVSDKDYI
                     YVSYFNVKEKSGNNFTLEHFEGTQMTYKIAASRIVYNEEKDNYSLYNYKKRYVGLASD
                     SLEYFTKKDTIFPFEMEDLTPVEYIAETLDFSALN"
     gene            complement(3296..4426)
                     /locus_tag="DHV98_02195"
     CDS             complement(3296..4426)
                     /locus_tag="DHV98_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008239755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HCK05191.1"
                     /translation="MKFTLEAKDPNSSARAATIELAHGPVHTPIFMPVGTAATVKGVH
                     QRELEQEIKPDIILGNTYHLYLRPQTKILQKAGGLHKFMNWDGNILTDSGGYQVYSLS
                     GRRKIKEEGVKFKSHIDGSLHLFTPENVMDIQRQIGADIIMAFDECTPYPCDKTYARD
                     SMHMTHRWLERCLLQLKKSPELYGFEQVFFPIVQGSTYTDLRRESAEYIASVGAQGNA
                     IGGLSVGEPAEEMYAMTQEVTAILPEDKPRYLMGVGTPINILENIALGIDMFDCVMPT
                     RNARNGMLFTAYGTINIKNAKWADDFDPIDSMNLTWVDTAYSKAYLRHLFTVNEMLGK
                     QIATIHNLGFYLWLVREARKHILAGDFTSWKNTMVRQMDNRL"
BASE COUNT         1290 a          959 c          792 g         1144 t
ORIGIN      
        1 ccatatgcgc cccgccgagt ggttccttga caatttcatc aattagggca agcttcttca
       61 tatcggtagc ggtcaatttt aaggcctctg cggcttgctc tttgtattcc cagctacgcc
      121 acaatattga agaacaactc tctggcgaaa ttaccgaata ccaagtattc tcaagcatca
      181 atacgcgatc cccaacacca atacccaatg caccaccact ggcaccttcg ccaataatca
      241 ccacgataat cggcacttga agccgagtca tttctagtat atttcttgcg atggcctctc
      301 cctgtcctcg ttcctctgct tccaatcctg ggtatgctcc aggagtgtct attaaggcaa
      361 caacaggtaa attgaatttt tctgcggact tcatgagacg taaggcctta cgatatcctt
      421 ccggattagc catcccaaag tttctgtatt gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncatcccaaa gtttctgtat tgtcgtgtct
      721 tggtattata acccttctgt tgaccgataa tcataaaact ctgctcgcct attttaccta
      781 gacccccgat catcgccttg tcgtctttaa atcctcgatc cccatgcaat tccaaaaaac
      841 tctccccaca aatagcgcgt atataatcca tggtataagg gcgatcggga tgacgtgata
      901 attgaacacg ttgccatggc gtaagatttt tgtagatctc cttttttgtt gccgttaatt
      961 tcttttcgat ctgtttgcaa gtattgctta catccacatc actatccgcc ccgatttgac
     1021 aggctttatt gtattgttcc tgtaattctt taatgggcaa ttcgaaatca agatactcca
     1081 taacacgctg cgttttatgt caaaaaaatg taaacaaata tagggatttg aaaggagctg
     1141 ttttacctat tgtggatatt ttctgcgccg tttcgccttg aaataggcat tgactaaaac
     1201 agtccccaaa ataatggcgg caccgatata aaaagtagcc gacatatact cggcatcacc
     1261 aaaaacaact aaagcgagca atatgccgta gaccggttca agattaatgg tcagcatcaa
     1321 agtaaaaggc gtaatccatt tcatcaaatt taccgaagcg ataaaggcat atgccgtaca
     1381 tatggtcgct aagattatca gatagaacca atcactcaaa ctcaaatcaa aaaatgcgct
     1441 gttaaatgca tcggtgaaaa acaaatacaa actaatacct aataccccaa aagaaagttc
     1501 aaaaaacgaa attgtggtgg cagaattttc ctgaaccaat cgaccattaa atactgaaaa
     1561 aagggcactt aaaaaagctg aaatcaaagc caaaacaatg ccccagacat actcagttga
     1621 tgcatgaaat attataccca gtccaaaaac ggcaaaaagc cccagaagaa cctcacgcca
     1681 attcatagga cggccaaaaa ttaggggctc aagaaaagcc gcaaaaaaag cacccgtagc
     1741 cattacggac aaggtcactg agacattaga tatttttatg gcaccaaaaa aagtgagcca
     1801 atgtaaggcc aaggccagtc ccaaaccaca cattttccaa agcgatttca cagaaggacg
     1861 tttccagcgg ccagtcgtca ccataaaaat gagcaccgcg atggctgcga tggacattct
     1921 aaaccaaact aaagaaatgg cctctaggga gatcaaggca ccgagtactg cagtaaaccc
     1981 ccagatcagc acgataaagt gcaaatgcaa atgatgcttg aggttatcgc tttgnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnngct ttgcatttct caataaaaag taagccaaaa cgccaaagac aaaatttgga
     2161 aaccaagtgg ctacaaaagg cgaaaatgta ctttgctcag ccatggtccc aaatatttta
     2221 tcgaaaaaca cataaatcat ccccacgcca atgccaatag ccagattgac gcccatacca
     2281 ccccttctct ttatcgaaga caccgcaacg gcaataatgg ttaagatata ggccgataca
     2341 ggaaggctcc accgtttata acgcacgact tcatagcgat taatgaagtt ggaccctttg
     2401 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtttaa
     2521 tgcagaaaaa tccagcgttt ctgcaatata ctccactggg gtcaagtctt ccatttcaaa
     2581 agggaaaatc gtgtctttct tagtgaagta ttcaagagaa tctgacgcca gtcccacata
     2641 gcgttttttg taattataca aggaataatt atccttttct tcattataaa cgatgcgact
     2701 cgcagcgatt ttataggtca tctgagtccc ttcaaaatgt tctaaagtga agttattacc
     2761 ggacttttct ttaacgttaa aatagctcac ataaatgtag tccttgtcac ttacctgcct
     2821 gtaaacattt gctctttcac gatcttttcc gcggcgtttg ttcaagtatt cataactgaa
     2881 ctcattgtat tttttactcg agtaaggcgc caagtaattg gccaggaaaa aggccataac
     2941 acaaacgact gtagcgccaa tcaaataagg tctcaggaaa cgcgtgtaag ataccccgct
     3001 acttaaaaaa gcaataactt ctgtgttatt ggccaatttt gaggtaaacc aaatggtcga
     3061 taaaaacaaa aacaagggaa ataacaaatt ggcaaagtaa accgtaaaat gcgcgtaata
     3121 tttggcgact tcaataaagg ggacctcgtt agccaatatt ttgtcaatct tgtccgctaa
     3181 attgaccaag atcccgatgg gcacaaagag taacagtagt aaaccaaagg ttcctaaata
     3241 tttcccaata atgtagcgat cgagtaggct cactttttaa tatctattgt ccgttttata
     3301 gtctattgtc catttgacgg accatagtgt ttttccacga cgtaaaatca ccagctaaga
     3361 tatgttttct cgcctcacga accaaccaaa ggtagaagcc caaattgtga atcgtggcaa
     3421 tttgctttcc gagcatttcg ttgaccgtaa aaagatgacg taaataggct ttactatagg
     3481 cggtatctac ccaggtaaga ttcatagaat ctatgggatc aaaatcatca gcccactttg
     3541 cgttcttaat gttaatggtt ccataagccg taaatagcat gccgtttcgg gcatttctag
     3601 tgggcatcac gcaatcaaac atatcaatgc ctagagcgat attctctaaa atatttatgg
     3661 gcgttcctac ccccattaaa taccttggct tatcttcagg taaaatagcc gtaacctctt
     3721 gggtcatggc atacatttct tctgcaggct ctccgacact taaaccccct atggcatttc
     3781 cctgtgcacc gacagaggca atgtattcgg ccgattcacg ccttaaatcc gtgtaggtac
     3841 ttccttgtac aatgggaaaa aagacttgtt caaagccata taattctgga gacttcttaa
     3901 gctgaagcaa gcagcgctca agccacctat gggtcatgtg catagaatct ctggcgtatg
     3961 tcttgtcgca aggataaggc gtacactcgt cgaaggccat aattatatca gcgccaattt
     4021 gacgctgaat atccatgaca ttttccggag taaataggtg cagactcccg tcaatatgcg
     4081 acttgaattt caccccctct tctttaattt tacgacgacc cgacaaagag tacacttgat
     4141 atcctccact atcggttaga atattgccgt cccaattcat gaatttgtgc aatcctcctg
     4201 ctttttgaag gattttggtt tggggacgca agtataaatg ataggtattg cctaaaataa
     4261 tgtctggctt gatctcttgt tctagttcgc gctgatgaac ccctttaact gtcgcagctg
     4321 taccaacagg cataaaaatt ggcgtatgga ctggcccatg ggccaattca atggtcgcgg
     4381 ctcgtgcgct cgagttagga tcttttgcct ctagggtgaa cttcatgaat aaaaatttaa
     4441 ggccatttat ttggggttga attgctgggg ccaaaggtaa ttgatttatc aggaactcac
     4501 gggacccaaa atcaagtgtt aactaaaacc aacaaatcgt tgataagtgc attttacatg
     4561 gcttgtctcc ggggattcaa agcgctactt ttgtgtcatt aataatgacc a
//
LOCUS       DPUP01000066            7391 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3533,
            whole genome shotgun sequence.
ACCESSION   DPUP01000066 DPUP01000000
VERSION     DPUP01000066.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7391)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7391)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7391
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..199
                     /locus_tag="DHV98_02200"
     CDS             <1..199
                     /locus_tag="DHV98_02200"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05192.1"
                     /translation="AFILSQDQTLHRRILKIFMPIKMFLKGYISGVFVFVCFIHSSFR
                     KRTNHERAVNYFSQYINELFL"
     gene            675..>1708
                     /locus_tag="DHV98_02205"
     CDS             675..>1708
                     /locus_tag="DHV98_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCK05193.1"
                     /translation="MIAITLPDGSIKNFEPGVTPFAVAMSISEGLARNVISATFNERV
                     VETCTSLDVDGSLTLHTWQNEEGKKAFWHSSAHILAQALEQLYPGVKLWVGPAIERGF
                     YYDVDLGQESLSEKDFKAIEDKMLEIARGKHDFKMRAISKDQALSYYKGKNEYKVDLI
                     SNLEDGTITFCDHDTFTDLCRGGHIPNTGIVKAVKILSVAGAYYKGDENNKQLTRVYG
                     ISFPKQKELTEYLALLEEAKKRDHRKLGKELELFTFSQKVGQGLPLWLPKGAALRERL
                     ENFLKAAQKKAGYDMVISPHIGNKELYVTSGHYAKYGADSFQSIKTPNEGEEFMLKPM
                     NCPHHCEIYN"
     assembly_gap    1709..1938
                     /estimated_length=230
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1939..2859
                     /gene="thrS"
                     /locus_tag="DHV98_02210"
     CDS             <1939..2859
                     /gene="thrS"
                     /locus_tag="DHV98_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018279189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HCK05194.1"
                     /translation="YNSKPWSYKDLPKRFAEFGTVYRYEQSGQLHGLTRVRGFTQDDA
                     HIFCTPDQLDQEFMNVIDLVLYVFGSLGFDNFTAQVSLRDPKNPDKYIGHLENWEKAE
                     TAIINAAKAKGLDYVVEEGEAAFYGPKLDFMVKDALGRSWQLGTIQVDYNLPERFELT
                     YKGRDNELHRPVMIHRAPFGSMERFIAILLEHTGGNFPLWLMPEQVSILSLSEKYEKY
                     AQKVLNLLENHDIRALVDNRNETIGKKIRESEMNKIPFMLIVGEQEELEGSVSVRQHG
                     IGDLGSMKIEMFIDKIKESVRQEVKEFKEV"
     gene            2939..3433
                     /locus_tag="DHV98_02215"
     CDS             2939..3433
                     /locus_tag="DHV98_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009641958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HCK05195.1"
                     /translation="MNGKIRALEVRLVGDNIEVGVYPLKQALSISEELGLDLVEISPN
                     AEPPVCKVMDYKKFVYEQKKREKVMKAKASKVVIKEIRFGPNTDDHDYEFKKKHGEKF
                     LKEGAKLKAYVFFKGRSIIYKDQGEILLLKLAQELEEFGKVEQMPKLEGKRMTMFIAP
                     KKSK"
     gene            3465..3662
                     /locus_tag="DHV98_02220"
     CDS             3465..3662
                     /locus_tag="DHV98_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HCK05196.1"
                     /translation="MPKQKTKSSAKKRFKLTGTGKIKRKHAFKSHILTKKSKKRKLAL
                     THDTVVDKSDESNVKQMLRLK"
     gene            3754..4098
                     /locus_tag="DHV98_02225"
     CDS             3754..4098
                     /locus_tag="DHV98_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013868673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HCK05197.1"
                     /translation="MPRSVNSVAKRARRKKVLKQAKGFFGRRKNVWTVAKNAVDKAMQ
                     YAYRDRRAKKRTFRALWITRINAGARQHGMSYSQFMGKLRAHDIELNRKVLADLAMNH
                     PEAFAAIVDKVK"
     gene            complement(4165..5424)
                     /locus_tag="DHV98_02230"
     CDS             complement(4165..5424)
                     /locus_tag="DHV98_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase B"
                     /protein_id="HCK05198.1"
                     /translation="MFLRLFFILFLSFCSQLHAGYILIPMGPEEQSQHLKAYGITYWV
                     IEQNIKAQWLLNYRGGSFLIPDVESVRRECRIRGVDFELISDQEAAQILTYISSPSQN
                     MEAIQLEKAPKVAVYAPPGMQPWDDAVTMVLTYAEIPFTTIYDKEVLGDELLLYDWLH
                     LHHEDFTGQYGKFYRAYRMAPWYLEQKKEAEVLAQSLGYNKVSQAKRDVALKIRDYVI
                     GGGFMFAMCSATDSFDIALAAQNVDICESMFDGDPSTPNYQGQIDFTQSFAFTDFLLE
                     RDPMVYEFSSIDMTVKRQIDKEKDYFTLMDFSAKWDPIPCMLVQNHTALVKGFMGQTT
                     AFDPAAVKPNVLIMGRNEVNGEARYLHGIRGKGFFTFYAGHDPEDYQHRVGDPKTELA
                     LHPSSPGYRLILNNILFPAAKKKKQKT"
     gene            complement(5523..7202)
                     /locus_tag="DHV98_02235"
                     /pseudo
     CDS             complement(5523..7202)
                     /locus_tag="DHV98_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015754443.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
     assembly_gap    6165..6211
                     /estimated_length=47
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6633..6705
                     /estimated_length=73
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         2183 a         1486 c         1425 g         1947 t
ORIGIN      
        1 agcgttcatc ctgagccagg atcaaactct tcatcgtaga atcttaaaaa tattcatgcc
       61 aataaagatg ttcctcaaag gttatatctc aggtgttttt gtgtttgttt gtttcattca
      121 ttcatccttt cgaaaaagga caaatcatga acgcgctgtc aattattttt ctcaatatat
      181 caatgaactt ttcttgtgag atggcgcgga attgaaccgc taaaacttcc tttcatctct
      241 atcgcttacc gtatctcttt cgctaagcgg gtgcaaatat agaacttaat ttcttctctg
      301 caattttatt tcaaaaaaac tttagaactt ttttttgttg ctttggagcg gctgttttgg
      361 acagttattt ccttttcaaa gcggtggcaa agataaatgt aattttcaca ttcgcaaaca
      421 atattattta gtttttcatc aataaaaatg ccgtgatttc acaagagact caggactatt
      481 gacttagcta aaaaatggtc gaaaaaaagt ttttacctat atatatgtat gtttttaacc
      541 aactttgtag tccatcccag attacgcact gaaacatccc tttgaaaggc ctgtttcttc
      601 aggtggttat attggataaa tcctattgta aaacgctaga atgaatctta tctttgccac
      661 ctaaactaaa ggcaatgatt gcaattactc tgcccgatgg cagtatcaag aactttgaac
      721 caggggttac tccttttgct gtagcgatga gcatcagcga aggtttggcc agaaatgtca
      781 tctctgcaac atttaatgag cgcgttgtag agacttgtac gtctctcgac gtagatggat
      841 cgcttacctt gcacacctgg cagaatgaag aagggaaaaa agctttttgg cattcctccg
      901 cacatatact tgcccaggca ttagagcaat tatatcccgg tgtaaagcta tgggttggtc
      961 ctgcaatcga acgcggcttt tactatgatg ttgatttggg ccaagaaagt ctctctgaaa
     1021 aagacttcaa ggctattgaa gataagatgc tggaaattgc acggggtaag cacgatttta
     1081 aaatgagagc catttctaaa gatcaggccc tctcctatta caaaggaaaa aacgaataca
     1141 aagttgattt aatttcaaat ctcgaagacg ggaccattac cttttgcgat cacgacacct
     1201 ttacggattt atgccgtgga gggcacatcc cgaatacggg tattgtaaaa gcggttaaaa
     1261 ttcttagtgt tgcaggggcg tactataaag gagatgaaaa taacaagcag cttacccggg
     1321 tttatggcat tagttttcct aagcaaaaag agctgaccga atacctcgca ttattggaag
     1381 aggcgaaaaa aagagaccac agaaaattag gcaaggaact tgaactcttt accttttccc
     1441 aaaaagtcgg acaaggtctt cctttgtggt tgccaaaagg ggccgcccta agagagcggc
     1501 tggagaactt cctaaaggct gcccagaaaa aagcaggtta tgatatggtt atctctcctc
     1561 atatcggaaa taaagagtta tacgtaacct ccgggcatta cgccaaatac ggtgcggata
     1621 gttttcaatc gatcaaaaca ccaaacgaag gtgaagaatt catgcttaaa cccatgaact
     1681 gtcctcacca ctgtgaaatt tacaacagnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnta caacagcaaa ccttggtcct ataaagattt acccaagcgt
     1981 tttgccgaat tcggcactgt atatcgttac gaacaaagcg ggcagcttca tggacttacg
     2041 cgcgttcgtg gatttactca agacgacgcc cacatttttt gtactccaga tcaactcgat
     2101 caggagttta tgaatgttat tgacctggta ctatacgttt ttggctcact tggttttgac
     2161 aattttaccg cacaagtttc ccttcgcgac ccaaaaaatc cagataaata tataggccat
     2221 cttgaaaact gggaaaaagc agagacggct attattaatg ccgccaaggc caagggattg
     2281 gattacgttg ttgaagaggg cgaagcggcc ttttacggac caaaacttga tttcatggta
     2341 aaggatgcct taggccgcag ctggcagttg ggcacaattc aagtagatta caacctcccg
     2401 gaacgatttg agcttaccta taagggtcgt gacaatgaac tccatcgacc agtaatgatt
     2461 cacagggctc cttttggaag tatggagcgc tttatcgcga tacttctaga acataccggc
     2521 ggtaatttcc cgctatggtt aatgccagaa caagtcagta ttttatccct cagtgagaaa
     2581 tacgaaaaat acgcgcaaaa agttttaaat ttgctcgaaa atcacgacat tcgcgccctt
     2641 gtagacaatc gcaacgagac catcggcaag aaaatccgag agtctgagat gaataaaatt
     2701 ccattcatgt tgattgtcgg agagcaggaa gaactggaag gttcagtttc tgtgagacag
     2761 cacgggatcg gcgatttagg aagtatgaaa atagaaatgt tcatcgacaa aatcaaagaa
     2821 agcgttcgtc aagaagtaaa ggaatttaag gaagtttaat taaaattata gagccatagc
     2881 aatacgtcgt aaaaggagta gaggacctgc ccggattatt aaagaagacc aacaccgcat
     2941 aaacggtaaa attcgcgctc tagaagtgcg tttagttggt gacaatatcg aagtgggggt
     3001 ctacccactc aagcaagcct taagcatctc cgaagaactc ggtttagatc ttgttgaaat
     3061 ttctccaaat gccgaacccc ctgtgtgtaa ggtaatggat tataagaaat ttgtctacga
     3121 gcagaagaaa cgagaaaagg taatgaaggc caaagcctcg aaagtggtga taaaggaaat
     3181 ccgatttggc cccaatacag acgaccatga ttatgagttc aaaaagaaac acggagaaaa
     3241 attcttaaaa gaaggggcca aattaaaagc ctacgttttc tttaaaggac gttcaattat
     3301 atacaaggac cagggagaaa ttttactgtt aaaattagcc caagaacttg aagaatttgg
     3361 caaagtcgaa caaatgccaa aattagaagg aaagcgcatg accatgttca ttgcgcctaa
     3421 aaagagtaag taataaagcg aaatcattat aaacctagga aacgatgcct aaacaaaaga
     3481 caaaatccag tgctaagaag cgttttaagc tgaccggcac cggtaaaatc aaaagaaagc
     3541 atgcgtttaa gagtcacatc ttaacaaaga agtcaaaaaa acgcaagcta gccctcacgc
     3601 atgatactgt tgtagacaaa agcgatgaga gtaacgtaaa gcaaatgctt cgcttgaagt
     3661 aagcttgcgt cggttaaatc aattaataac cctggagtca ggctcaaaaa agtgtttaat
     3721 caataaaccg cctgctacaa aaaatttaaa attatgccaa gatcagtaaa ctcagtcgcc
     3781 aaaagagcac ggcgcaaaaa agtgctcaag caagccaaag gattctttgg acgtcgtaaa
     3841 aatgtatgga ctgtagcaaa aaacgctgta gacaaagcca tgcaatacgc ctacagagac
     3901 cgtcgtgcta aaaaacgtac gtttcgtgcg ctttggatta ctcgaattaa tgcaggggct
     3961 cgtcaacacg gtatgtctta ctcgcagttt atgggtaaat taagagctca tgatatcgag
     4021 ttaaaccgta aagttttagc agaccttgcg atgaatcatc cagaggcttt tgccgctata
     4081 gtagacaaag taaaataggc cttcaaggca aaaactaaca atatttcgct ttaaaaaaaa
     4141 cgcctccatt atggaggcgt ttttttatgt cttttgtttt ttcttcttgg ccgcaggaaa
     4201 taaaatattg tttaaaatta ggcggtaacc aggcgagctc ggatgcaagg caagttccgt
     4261 ttttggatcc cctactctat gctggtaatc ctcaggatca tgaccggcat aaaaggtaaa
     4321 aaaacctttt ccccgtattc catgaagata acgggcttca ccatttactt cattacgacc
     4381 cataatcaat acatttggtt tgaccgctgc aggatcgaag gccgtggttt gccccataaa
     4441 ccccttgacc aatgcagtgt gattttggac aagcatgcaa ggaataggat cccactttgc
     4501 actaaaatcc ataagcgtaa aataatcctt ttctttatcg atctgacgct ttaccgtcat
     4561 gtcaatactt gaaaattcat aaaccatagg atctctttca agcaaaaaat cggtaaaggc
     4621 aaaactttgg gtgaaatcaa tttgcccttg ataattaggc gtactggggt caccatcaaa
     4681 catagactca caaatatcca cattttgagc cgctagtgct atgtcgaaac tgtctgttgc
     4741 actgcacatg gcaaacataa atccgccacc gataacgtag tcccgtattt taagcgccac
     4801 atctcttttg gcttgcgaaa ccttattata tcccaaagat tgcgctagga cctcagcctc
     4861 ttttttttgc tccaaatacc agggcgccat tcggtacgcg cgataaaatt ttccatattg
     4921 acctgtaaaa tcttcatgat gcaaatgaag ccaatcgtag agcagtagtt catcgcccaa
     4981 cacctctttg tcataaatcg tagtaaaagg aatctctgca taggtcaaga ccatagtgac
     5041 cgcgtcatcc caaggctgca tacccggagg cgcataaacg gcaactttcg gtgccttttc
     5101 taattgtatg gcctccatgt tttgtgaagg actgcttata taggttagta tttgggccgc
     5161 ctcttggtca gaaattaatt caaaatcaac acctcgaata cgacattccc gacgcactga
     5221 ttccacatca gggattaaaa aagatccgcc gcgatagttc aataaccatt gcgctttgat
     5281 attttgttca ataacccaat aggttattcc ataggccttc aaatgttgtg attgctcttc
     5341 aggccccatt ggaatcaaga tatatcccgc gtggagctga ctacaaaaac tcaaaaacaa
     5401 aataaaaaat aggcgcaaaa acataggttt aaggtacgaa tttcaaaact cggttcggag
     5461 gtttctactg ctttttatgg gcgatgtgcc tcatgctttt taaaagcaat gagcatactt
     5521 ccttaaaatg gaatatcgtc ttctgggcca cttgaatcat cattaagggc gcttccaaag
     5581 gcctcatctg cagagggata atgagtcggc ttgtaggtgt catcatttgc cgcatcattc
     5641 atgcgtgaat gaatttctgt cgggtagtca aacaactcca aattttcaaa tcgaccaaga
     5701 tgtccgacga acttaagacg gatttcatcc agacctccat tacggtgttt ggcgacaata
     5761 acttcacctt gaccctcagt aggcgatcgc tcatcgtcat cccattcatc gattttataa
     5821 tactccggac gataaataaa tgaaacgata tcagcgtctt gttcaatggc ccctgactcc
     5881 ctcaagtcac tcagaattgg acgtttactt cctccgcgcg tttctacagc acgcgaaagc
     5941 tgagataagg cgataacagg cacatttaat tctttggcca aggcctttaa gtttcttgaa
     6001 atcgtagaga tttcttgttc ccgattcccg cctttttgcg atccgccagc ggtcatcaac
     6061 tgcagataat ccaccatgat gagtttaatg ccgtgttgag aggccaaacg tctggctttt
     6121 gcacgaaggt caaaaatgga taaggccgga gtatcatcga tatannnnnn nnnnnnnnnn
     6181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncatcgatat agagaggggc tttttcaagg
     6241 cttttcactt tgacattcaa ctgctcccat tcgtgttttt cgagtttccc ggtacgtaat
     6301 ttttcggaag aaagcccagt ttcagaagaa atcaatcggg tgattaattg cactgaactc
     6361 atctctaatg aaaagaacgc tactggaatt tcatattcta cggcaatatt tcgtgccata
     6421 gacagcgtca aagcagtttt acccatacct ggtcgcgctg cgataataat taaatcactg
     6481 ggttgccaac ctgaagtcaa tttatcaaca cgactaaatc cagaaggaat ccccgagagt
     6541 ccctcgcgat tcgcgatctc ttcaattcgt tttttggctt gaatcaccag attttgcgcc
     6601 gtctccgagc tgcgttttaa atttccttga gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnacctc ataaagcttt
     6721 gattctgcgt tgtccaacaa atcaaagaca tcggtccctt catcgtaggc ctcttcaata
     6781 atttcacttg aaatttttat caagcttctc tgtatgtatt tctgaagaat gatgcgcgca
     6841 tgaaactcga tgtgcgctga agaggagact ttttgagtca attgtatcaa gaaaaactcc
     6901 ccgccgacac gttccaaacg cttcgccttc ttgagttcag ccgaaacggt taataagtct
     6961 acaggttgac tggattgaaa caaattaacg atcgcctcaa agatgagttg atgggcctcc
     7021 ttgtagaaaa catcaggatt aaggatatcg atcacctcat caacaccttt tttgtcaatc
     7081 atcattgctc ctaatacaac ttcttctaaa tcaactgctt gaggaggtat tttgcctttt
     7141 tccaaggcaa ttacttgccc tactcgtgtg ggaaatgagg atgttttagt cagtggttcc
     7201 ataagtaacg aaaataatga tttgtcgcgt tttccatata agacccacgc tgagtatatt
     7261 cacggttcat caacactatg ggtgttgata agtcaaaaaa atagttaata acccaaaaaa
     7321 gagtgttggt cctttttggt caaattcgaa aaggccttgt ccatattgga tttagccctc
     7381 aaactcaccc a
//
LOCUS       DPUP01000067            4108 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_27044,
            whole genome shotgun sequence.
ACCESSION   DPUP01000067 DPUP01000000
VERSION     DPUP01000067.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4108)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4108)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4108
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..504
                     /locus_tag="DHV98_02240"
     CDS             <1..504
                     /locus_tag="DHV98_02240"
                     /EC_number="3.6.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008990067.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the alpha chain is a
                     catalytic subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HCK05199.1"
                     /translation="NVISITDGQIFLESDLFNSGVRPAINVGISVSRVGGSAQIKSMK
                     KVAGTLKLDQAQYRELEAFAKFGSDLDAATMNVIEKGKRNVEILKQAQNDPYTVEDQV
                     AIIYAGSKNLLRNVPVEKVKEFERDYIELLNTKHRDSLDDLKAGKLTDEVIDVLTQVA
                     KDLSSRY"
     gene            559..1328
                     /locus_tag="DHV98_02245"
                     /pseudo
     CDS             559..1328
                     /locus_tag="DHV98_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297311.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the gamma chain is a
                     regulatory subunit; frameshifted; too many ambiguous
                     residues; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
     assembly_gap    987..1046
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1522..1950
                     /locus_tag="DHV98_02250"
     CDS             1522..1950
                     /locus_tag="DHV98_02250"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05200.1"
                     /translation="MILVGCASGKEASQASAAPFQLIWANVEPWVSGTLDGPSGMRLR
                     FELSPPSAPVRFKSLCYMQQSAPLVKRPNRPDEFSVSYGGNPSSSQLQLESCAVPDFW
                     QSETNQPDQAVLIYEQDGVENYFVIKDIVLKPILAYPERQ"
     gene            1995..2429
                     /locus_tag="DHV98_02255"
     CDS             1995..2429
                     /locus_tag="DHV98_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HCK05201.1"
                     /translation="MEIKLINKSGHPDPAYETERSAGMDLRAVTTDPVTLAPMQRTIV
                     KTGLFIELPVGYEAQVRPRSGLAAKSGITVLNAPGTIDADYRGEIGVILVNLSDSAFT
                     IQHGDRIAQLVIAKHERAQWRSAESLSETERGSGGFGSTGVQ"
     assembly_gap    2504..2585
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2586..3566
                     /locus_tag="DHV98_02260"
     CDS             <2586..3566
                     /locus_tag="DHV98_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HCK05202.1"
                     /translation="RLRPHSLTVPKPLIPVAGMPIVHRLVRDIAALMEEPISEIAFVL
                     GDPAYFGSEVVRTLEALAHDLGAKPSIYRQLDPKGTGHAIMCAEPSLEGPAVVAYADT
                     LIRASFDLDKSADSVIWTKKVKEPQAYGVVALNEQGHITDLVEKPQEFVSDQAVIGIY
                     YFKDIGALKTELQQVIDKGLTHGGEYQINDGIKAMMAQGKVFKTSTVDHWMDCGNKDI
                     TVETNTKMLGFMEQDGLPMRGENIVAQQTQIIEPCYIADGVILRNCKIGPHVSIGPNT
                     VVEDSIIEQSIIQGNTKITNASLREAMIGNHVVFDGNFTKVSLGDYTQMV"
     gene            3602..>3807
                     /locus_tag="DHV98_02265"
     CDS             3602..>3807
                     /locus_tag="DHV98_02265"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05203.1"
                     /translation="MGPVLFAQKDSTAISASANLKRFMTFYFESIKHRAMENPELALK
                     ALDAAQRIKDLNQEQQSAIAYEQG"
     assembly_gap    3808..3900
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3901..>4108
                     /locus_tag="DHV98_02270"
     CDS             <3901..>4108
                     /locus_tag="DHV98_02270"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05204.1"
                     /translation="QDFDRAIRAFELAQTHPEFKRAAQMSLYDIYHQQGAYEHAIVVV
                     KALSKIDNDYAVDLIKLQLEMGNLD"
BASE COUNT         1156 a          813 c          942 g          962 t
ORIGIN      
        1 aacgtaattt cgattacaga cggacaaatc ttcttggaga gtgacttgtt taactcaggg
       61 gttcgtccgg cgattaacgt gggtatttcg gtatcacgtg ttgggggatc tgctcagatt
      121 aaatcgatga aaaaagttgc gggtacctta aagcttgacc aggctcagta ccgcgaacta
      181 gaagcatttg ctaagttcgg aagtgatttg gatgcagcca cgatgaacgt catcgaaaaa
      241 gggaagcgta acgtagaaat cttgaagcaa gcacaaaatg atccttacac tgttgaagat
      301 caggtagcga taatttatgc gggttcaaag aacttgttgc gtaacgttcc ggtagaaaaa
      361 gtaaaagaat tcgaaagaga ttatattgag ctattaaaca ccaaacatcg cgatagttta
      421 gatgacctta aggcgggaaa actaaccgac gaagtcatcg atgtactgac tcaggttgca
      481 aaagacttgt cttcacgtta ctaaacttag cgctaagatc aattaatcta atattcactg
      541 taagtaaagc gagcatacat ggctaactta aaggaaatca gaaatagaat ctcgtccgta
      601 gggtctacca tgcaaattac cagtgccatg aaaatggtgt ctgcagccaa actgaaaaag
      661 gctcaggacg cgatcgtggc catgcgtcct tacgctgaga ccttgagtgc tttgttgcaa
      721 aacctaagcg ccgctttgga tggtgaggcc aacagcccat acacggcaca aagaccaatt
      781 aaaaaagtat tggccgtggt aatcacctca aatcgcgggc ttgcgggggc gtttaacagt
      841 aatgtcgtca aagaagccaa gcgggtagga gaacatttct ctcaagcgca ggtagattat
      901 tttaccttgg gtaaaaaggg gaatgatgcc tttaaaaaat cagaacgcgt cgtgtttaac
      961 gacaatacga tttttgacga tcttaannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnngaag gaactacagc aggaaccaca gattttatct
     1081 ttgagccttc tcaagaagaa attgtagccg agctcattcc aaagagttta aaaactcaat
     1141 tgtttaaggc attgcgtgat agtgtagcca gcgaacatgg agcgcgtatg actgccatgc
     1201 acaaggccac agataatgcc aaagagctta aaaacagcct gacccttgag tataacaagg
     1261 cgcgacaagc ggccattacc aatgaaattc ttgaaattgt tggtggtgct gaggccttag
     1321 ctggataagt gatcaaatgc ccaaaaggcc ccgagcagcg ctttgaaaat gggtcattaa
     1381 aacgatatga acctccccga ttggggaggt ttttttatac ctttatggag ataaactcgg
     1441 tttagaatgg gacgtatgat ctggagcaag cgaagggcag caataatcaa tgggggtcgt
     1501 ttatgcagcg cattattgtt gatgattttg gttggttgtg cttcgggtaa agaagcgtct
     1561 caggcttcag cagcaccttt tcagctgatc tgggccaatg tagagccatg ggtttccggg
     1621 accttagacg gcccaagcgg gatgcgcctg cgatttgagc ttagcccgcc aagtgcgcca
     1681 gttcggttta aatcactgtg ctatatgcag cagtcggcgc ccctggtgaa aaggccaaat
     1741 agacctgatg agtttagcgt gagttatgga ggcaatccat cgtcatccca gcttcagctt
     1801 gagtcctgcg cggttcccga tttttggcaa agcgagacga atcagccgga ccaagccgtt
     1861 ttaatttacg agcaggacgg cgtcgaaaat tattttgtga taaaggacat tgtcttaaag
     1921 ccgatactgg cttatccaga acgacagtag ccgcattgag aaaacaagaa aacaaggaaa
     1981 cgtttaatca aaccatggaa ataaagttaa ttaataaatc gggtcatccc gatccggctt
     2041 atgagacgga gcgttctgcg ggcatggatt tgcgcgccgt gactactgat cctgtcactc
     2101 tagcgccgat gcagagaacg atagttaaaa cgggattgtt tatcgaactt cctgtagggt
     2161 acgaggctca ggtccgtccg cgtagtggct tagcagcaaa gagcggaata actgttctta
     2221 acgctcctgg cactattgac gccgattatc gcggagaaat tggggtgatt ttagtgaatt
     2281 tatcggacag tgcatttaca attcagcacg gggatcgtat cgcccaatta gttattgcca
     2341 aacacgaacg ggcccaatgg cggtcagcag aatccttatc agaaacagaa cgcggcagtg
     2401 gaggcttcgg cagcactgga gttcaataac cccaataatg attatccaca atacatcctt
     2461 atgaaaataa ttgtccccat ggcgggtcgc ggatcccgat tacnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnagatt acgccctcat tctttaaccg ttccgaaacc acttattcct gtagcaggca
     2641 tgcctatagt tcatcgatta gtgcgcgata ttgccgcctt aatggaggaa cccattagtg
     2701 aaattgcttt tgttttagga gaccctgcat attttgggtc agaagtagtt cgtacccttg
     2761 aagctctggc ccacgattta ggcgctaagc catcaattta tcgtcaattg gaccccaagg
     2821 gcactggcca tgcaattatg tgcgcagaac cttccttaga aggcccagca gtcgtcgcct
     2881 acgccgacac cttaatacgg gccagttttg acctagacaa atctgcggat agtgtcatat
     2941 ggactaaaaa agtgaaagag ccacaagctt atggtgttgt ggccttaaat gagcaaggcc
     3001 atatcacgga tttggtagaa aaacctcaag agtttgttag tgaccaggcg gttatcggta
     3061 tttactactt taaagatatc ggggccctaa aaaccgaatt acagcaggtc attgataagg
     3121 ggctcactca tggcggagaa tatcaaatca atgatggaat caaggccatg atggcacaag
     3181 gaaaggtatt taaaaccagt acggtcgacc attggatgga ctgcggcaac aaagacatca
     3241 ccgttgaaac caacaccaaa atgctcggat ttatggagca agatggcctg ccgatgcgcg
     3301 gagaaaacat agttgcgcag caaactcaaa ttattgagcc ctgttatata gccgatggcg
     3361 tgatccttcg taattgtaaa attggccccc atgtctcaat tggcccaaat accgttgtcg
     3421 aggattcaat tattgaacaa agtattatcc aaggcaacac taaaattaca aacgcctctt
     3481 tgagagaagc catgattggc aatcatgtgg tttttgacgg aaactttaca aaggtaagtc
     3541 tgggcgatta cacccaaatg gtatgaattt aaagagcaca atagcacttt gtctcatcgt
     3601 tatggggcct gttctttttg cgcaaaagga cagcactgcc attagtgcct ctgcgaattt
     3661 aaagcgcttt atgacatttt attttgagtc aataaagcat cgggcgatgg aaaacccgga
     3721 attggcgcta aaagcattgg acgccgccca gcgaattaaa gatttaaacc aggaacagca
     3781 gagtgctata gcctatgagc agggcaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 caggattttg atcgagccat acgagcgttt gaattggctc aaactcatcc agagtttaag
     3961 agggccgctc aaatgagttt atacgacata taccaccagc aaggcgccta tgaacatgcg
     4021 atcgttgtgg tcaaagccct ttctaaaata gataacgact acgctgtaga tttaatcaag
     4081 ttacagctag agatgggaaa cttagatc
//
LOCUS       DPUP01000068            7807 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10262,
            whole genome shotgun sequence.
ACCESSION   DPUP01000068 DPUP01000000
VERSION     DPUP01000068.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7807)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7807)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7807
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1080
                     /gene="lpdA"
                     /locus_tag="DHV98_02275"
     CDS             <1..1080
                     /gene="lpdA"
                     /locus_tag="DHV98_02275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCK05205.1"
                     /translation="LMKKNKIEVINGHGTLKPGKEVDVDGTIYSADHIIIATGARSRA
                     LPNLPQDGKKVIGYREAMTLKEQPKSMIVVGSGAIGVEFSNFYNSMGTEVTIVEYLPN
                     LVPLEDEDVSKQFEKIFKKSGINVMTNAALESVDTSGEGVKASVKTKDGIKELHADIV
                     LSAVGIAANIENIGLEEVGIVTDKGKILVDEFYRTNIPGYYAIGDVVPGPALAHVASA
                     EGITCVEKIAGLHAEPIDYGNIPGCTYTSPEIASVGLTEAQAKEQGYDIKVGKFPFSA
                     SGKASASGAKDGFVKVIFDAKYGEWLGCHMIGAGVTDMIAEAVVARKLETTGHEVLKA
                     IHPHPTMSEAVMEAVAAAYDEVIHL"
     gene            complement(1154..1570)
                     /locus_tag="DHV98_02280"
     CDS             complement(1154..1570)
                     /locus_tag="DHV98_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate dehydratase"
                     /protein_id="HCK05206.1"
                     /translation="MSKIVIINGPNLNLLGKREPEIYGAQGFDDYLPILSQAFPGHEL
                     IYAQTNVEGELINLLHEHGFSAAGIILNAGAYTHTSVGIGDAVRAIETPVVEVHISNT
                     FAREDYRHRSFIAPHASGVIVGFGLKVYDLALHFFK"
     gene            complement(1587..2402)
                     /locus_tag="DHV98_02285"
     CDS             complement(1587..2402)
                     /locus_tag="DHV98_02285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019669838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCK05207.1"
                     /translation="MDKLPKAGIPAITLIIFAVIILAKSAITIGSGEAGVLYKVFDGG
                     VVTDQPPLGEGFHIIAPWNKVIIYEIRQQELFEKMKVLSSNGLEIQIDASAWYKPITE
                     DLGKLHQEKGENYLERIIQPAIRSAARSVVGRYTPEQLYSSKRDAIQEEIYEETKKIL
                     DKQYVQLNEVLVRDVTLPGTIKDAIERKLKQEQESLEYEFRLVTAQKEAERQIIEAQG
                     KADANRILSASLTDKILSDKGIEATIKLSESNNSKVVVIGSGKDGLPLILGNN"
     gene            complement(2418..3623)
                     /locus_tag="DHV98_02290"
     CDS             complement(2418..3623)
                     /locus_tag="DHV98_02290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05208.1"
                     /translation="MNNNAVLSVEGVDEKRRILLVYHNMHPDIGALTRGLEADERTEI
                     ISAHPEKALDQLNDIDAVIFYQPNRVFAPLMAKIIEEQINVWLISGPQTDWSEVSKIQ
                     PVLQKEFLGVSDELFSLVNREFSLFQPPYEKWSQMPPLVSDIGPLSINTPHEALLTSV
                     LQNQPSKSIQLGFFEQKGMRWIVWDGIGLWRWKMEAFRQTKSHESFDAFLGILGKYIT
                     KHQEKSVLKVKFNSVYSQSAQAELYAQYLDKTDELDMSADLEIKLIHQESKREIIRPL
                     LADSKQYKLNLSDLAPGIYNFTVRVLGTTEQKSGQFEIDPIQREMGQGFAKIQPMKSW
                     AELNQAPLYYLSKMEDLREKLLTEPKFMPREVVTEKKLDFIRWYYALAFLILMSTVEW
                     FIRKYNGLT"
     assembly_gap    3652..3712
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3713..4420)
                     /locus_tag="DHV98_02295"
     CDS             complement(<3713..4420)
                     /locus_tag="DHV98_02295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05209.1"
                     /translation="MIVLIPLSLILSYYIYAKHKFPNFWTKPLLVFLRASALSLLVIL
                     LFNPQIKQKTVRIVYPELSILLDQSTSIQDSVLIQNFYDQWRADKLLNEKFHVNWYGF
                     GLEVNPLKKLEFKATQTNIGRAVENLDRILGQDQGPLVVVTDGQQTLGPSYEYYRAQN
                     RQIYPVVVGDTVWPEDLALQRVTANPIVRKDQAFEVELVLNRTGSVMELTTELEAYQE
                     GKKIKSIPVNFPYGATKQ"
     gene            complement(4477..5223)
                     /gene="fabG"
                     /locus_tag="DHV98_02300"
     CDS             complement(4477..5223)
                     /gene="fabG"
                     /locus_tag="DHV98_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HCK05210.1"
                     /translation="MKLLENKVALITGGSRGIGKGIVEVFAAQGAHVAFTYNSSAEAA
                     NAMAEELSQNGVKVKAYQSDAAQFDQAESLVAQVLADFGSVDILINNAGITKDNLLMR
                     ISEEDFDRVIEVNLKSVFNMTKAVQRTMLKQRHGSIINMSSIVGVQGNAGQTNYAASK
                     AGIIGFSKSVALELGSRNIRCNVIAPGFIETEMTQKLDEATVQTWRDGIPLKRGGTPQ
                     DIANTCLYLASDLSSYVTGQVIHVDGGMYT"
     gene            complement(5235..6131)
                     /locus_tag="DHV98_02305"
     CDS             complement(5235..6131)
                     /locus_tag="DHV98_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016419527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HCK05211.1"
                     /translation="MSVLVNKNSKIIVQGFTGSEGTFHASQMIEYGTNVVGGVTPGKG
                     GQTHLDRPVFNTVAEAVDKVGADTSIIFVPPAFAADAIMEAAEAGIKVIITITEGIPV
                     ADMIKAADYIKDRDCRLIGPNCPGVITPEEAKVGIMPGFVFKKGPVGIVSKSGTLTYE
                     AADQVVRQGLGITTAIGIGGDPIIGTTTKEALSLLINDPETQAVVMIGEIGGQLEADA
                     AQWYAQSGSTKPVVGFIAGETAPAGRTMGHAGAIVGGSDDTAQAKKKIMRSCGIHVVD
                     SPAEIGKKVAELLKYSILTRNN"
     gene            complement(6238..6624)
                     /locus_tag="DHV98_02310"
     CDS             complement(6238..6624)
                     /locus_tag="DHV98_02310"
                     /inference="COORDINATES: protein motif:HMM:PF12680.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05212.1"
                     /translation="MGPKKLVKAFYNAHVVEEANIVSRFFHSDLQLTWFSSHGKVVMG
                     FDQLDAFFKEINKTYDDLRVSLHHVVKEGNTVAVRCTYYARTIENPEEEMAISHFNAF
                     WEVRDGIIVKGHMMSQPASAPDWQPV"
     gene            complement(6624..>7390)
                     /locus_tag="DHV98_02315"
     CDS             complement(6624..>7390)
                     /locus_tag="DHV98_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007649249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCK05213.1"
                     /translation="EATVILINKEVDCPKGKALLISDDPFRDFNKLKAHFRPFVPATA
                     MVCETASIGSNTIIQPGCFIGNNVTIGKDCLIHANVVLYDHTVIGDRVVIHSGSILGA
                     DAFYYKKRPEGFDPLQSSGRVLIEDDVHIGAACTIDKGVSGDTTIKKGAKLDNQVHIG
                     HDSVIGKDCLIASQVGVAGCVNIEDGVTIWGQAGITSAITIGAGSIISAQSGVSKSLE
                     GGKSYFGTPAEEFRKKYKELAALRQLPEVVEQLKKK"
     assembly_gap    7391..7532
                     /estimated_length=142
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7533..7696)
                     /locus_tag="DHV98_02320"
     CDS             complement(<7533..7696)
                     /locus_tag="DHV98_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCK05214.1"
                     /translation="MKLPHVHPLKTIAQLINCHYVGPDDFPVEGFNEIHVVRPGDIVF
                     VDHPKYYDKA"
BASE COUNT         2149 a         1735 c         1520 g         2200 t
ORIGIN      
        1 ttaatgaaaa aaaataaaat tgaggtcatt aatggccatg gaacccttaa gccaggtaaa
       61 gaagtcgatg tggacggaac aatatatagt gcagaccaca ttatcatcgc cacgggagca
      121 cgttcacggg ctttgcctaa tctccctcaa gatggcaaga aagtaattgg ctatcgcgag
      181 gcaatgaccc taaaggaaca gcccaaatca atgattgtcg tgggaagcgg tgctataggg
      241 gttgagtttt ctaatttcta caacagcatg ggcaccgaag taacgatcgt tgagtacttg
      301 cccaatctcg tgcctttaga agatgaggac gtatcaaaac agtttgaaaa aatatttaag
      361 aaaagcggca tcaatgtgat gactaatgcg gccttagaaa gtgtcgacac ttcgggggaa
      421 ggagttaaag caagtgtcaa aaccaaagat ggcatcaaag aactacacgc cgatatcgtc
      481 ctttcagcag tgggtatcgc agcgaacatt gaaaacatag gtcttgaaga agtcggtatt
      541 gttaccgata aaggaaaaat tttagtcgac gaattttacc gcaccaatat tccgggttat
      601 tacgccattg gggatgttgt tccaggccct gcgctggctc acgtagcttc agcagagggg
      661 attacttgtg ttgaaaaaat tgccggtcta cacgccgaac caattgacta cggaaatatt
      721 cctgggtgta cttatacttc gcccgaaatt gcgagtgtag ggcttactga ggcgcaagca
      781 aaagaacaag gctatgacat taaagtgggg aaattcccct tctctgccag tggtaaagcg
      841 agcgcttctg gggccaaaga tggttttgta aaagtgatct tcgacgctaa atacggagaa
      901 tggctcgggt gtcatatgat cggggctggt gtaacggata tgattgctga ggcggtcgtg
      961 gcgcgtaagc tagaaaccac agggcacgaa gtattgaaag cgatccaccc tcacccaact
     1021 atgagtgaag cggtaatgga agctgtagca gccgcttatg acgaggtgat tcacttgtag
     1081 cacccacaga atttattccg aacattattg gaatccatat tcaataaaaa aatcctcttt
     1141 cgaggatttt tttttatttg aaaaagtgaa gcgctaaatc ataaactttg agcccgaatc
     1201 ctacgataac acccgaagcg tgcggtgcaa taaaagatcg atgtcgatag tcttctctgg
     1261 cgaatgtatt tgaaatgtgt acttcaacga caggggtttc aatggcccga accgcatccc
     1321 caatacccac cgaggtatgg gtgtaagctc cggcatttag aataataccc gctgcactaa
     1381 agccgtgttc gtggagcaga ttaatgagct caccctccac attggtctgg gcatatatca
     1441 attcgtggcc gggaaatgct tgactaagaa ttggcaaata atcatcaaaa ccttgagccc
     1501 cgtatatttc tggctcacgt ttgcccaata aattcaaatt gggcccattt atgatgacta
     1561 ttttagacat ttcttgaagc taaactctag ttattcccca gaatcagtgg cagaccgtct
     1621 tttcctgaac caatcacaac aacttttgaa ttattggatt cagataattt tatggtcgcc
     1681 tcaattcctt tgtcgctcaa aatcttatcg gtcaatgaag cactaagaat cctgttggca
     1741 tctgccttac cttgggcctc aataatttga cgttcggctt ccttttgcgc cgtaaccaaa
     1801 cgaaattcat attccaagga ctcctgctct tgctttaatt ttcgttcgat cgcatctttg
     1861 atggttcctg gtagggtcac atctcgaaca agaacctcat tgagttgtac gtattgttta
     1921 tccaaaatct ttttggtttc ttcatagatt tcttcttgta tcgcatcgcg tttagaagaa
     1981 tacaattgtt ctggagtgta acgccctaca acacttcttg ccgcactgcg aattgcaggc
     2041 tggataatac gttcgaggta attttcccct ttttcttgat gaagttttcc taaatcttcg
     2101 gtgataggct tataccatgc agaggcatcg atctgaatct ctaaaccgtt agaggaaagc
     2161 accttcatct tctcaaataa ttcttgctga cgtatttcat atataatgac cttattccaa
     2221 ggggcaataa tatgaaatcc ttctcccaat ggtggttggt cggtaacaac accgccatca
     2281 aaaactttat ataaaacgcc tgcctctccc gagccaattg taattgccga ctttgccaaa
     2341 ataataacag caaaaatgat tagtgtaatt gcaggaatac ctgctttggg taatttatcc
     2401 ataatagatt ttgtttttta ggtgagaccg ttatattttc gaatgaacca ttcaacagta
     2461 gacatcaaaa ttaagaaagc taaggcgtaa taccatctaa taaagtctag ttttttctca
     2521 gtcactactt ctctgggcat aaatttcggt tcagtcaata atttttctcg taaatcttcc
     2581 attttactca gataatacag cggtgcttga ttcagctcag cccaggattt catgggctga
     2641 attttcgcaa acccttgccc catttcacgt tggatgggat caatttcaaa ttgacctgat
     2701 ttttgttctg ttgtgcccaa gacacggaca gtgaaattgt aaatccccgg ggctagatca
     2761 gaaagattaa gtttatactg tttggaatcc gccagcagag gtctgataat ttcgcgctta
     2821 gattcttgat gaattaactt gatttcaaga tcagcggaca tatcaagttc gtccgtttta
     2881 tccaaatatt gggcataaag ttctgcttgg gcgctctgcg aataaactga attaaatttg
     2941 accttaagaa cgcttttctc ttgatgtttg gtgatatatt tcccaaggat tcctaaaaaa
     3001 gcatcaaatg attcatggga ttttgtctgt ctaaaggcct ccattttcca tcgccataga
     3061 ccaattccat cccaaacgat ccagcgcata cccttttgct caaaaaagcc gagctgaata
     3121 cttttgctcg gttgattctg cagtacagaa gtcagcaagg cctcatgagg cgtattaata
     3181 ctgagcggac caatatcaga aactaaaggg ggcatttgac tccatttttc atagggaggc
     3241 tgaaacagag aaaattcacg attgaccaaa gagaataatt catcgctcac ccctaaaaat
     3301 tccttttgta aaaccggctg tattttactg acctcagacc aatcagtttg gggacccgaa
     3361 atgagccaaa cattgatttg ctcttcgatt attttggcca ttaatggtgc aaaaactctg
     3421 ttaggttgat aaaagatcac ggcatcaatg tcatttaatt gatccaaggc tttttcggga
     3481 tgggccgaaa ttatttcggt tcgctcatct gcttcaagtc cacgggtcaa agcaccaata
     3541 tcaggatgca tattatgata aaccaataaa atacgtcttt tttcatctac gccttcaaca
     3601 gaaagcacgg cattattgtt catgaaaatt cgttcccctg gaactgattt cnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnttgcttgg
     3721 tcgcgccata cggaaaattg acgggaatag atttaatctt tttaccctct tgataggcct
     3781 caagctccgt ggtcaattcc atgaccgaac ccgtgcgatt taagaccaat tcaacctcaa
     3841 acgcctggtc ttttctcact attgggtttg ccgttacacg ctgtaatgcc aaatcctctg
     3901 gccaaacagt atccccgaca acaacaggat atatttgtcg attttgtgcc ctataatatt
     3961 cataagaagg ccccaaagtt tgttgcccat ctgtcaccac gaccaaaggg ccttggtcct
     4021 gccctagaat tcgatctagg ttttctacag cacgaccaat attggtttgg gtcgctttga
     4081 actctagttt ttttagaggg tttacctcca gaccaaaacc ataccaattc acatggaatt
     4141 tttcattcag tagcttgtcc gctcgccatt gatcataaaa attttgaatc aagacgctgt
     4201 cttgaattga ggtcgattga tccaataaaa tactgagttc tggatatacg atcctcactg
     4261 ttttttgctt tatctgaggg ttgaaaagca aaattacgag cagtgagagc gcactggccc
     4321 ttaaaaacac cagtaaaggc ttagtccaaa aatttgggaa cttgtgcttc gcgtagatat
     4381 aataagacaa aatcaacgac aaggggatca atacgatcat ccacagccat tgattttgta
     4441 aatatggttc catgttcagg acccgttaag gccatattag gtgtacatac ctccgtctac
     4501 atggatcact tgaccggtaa cataagatga caaatcactg gccaaataaa gacaagtatt
     4561 ggcgatatct tgaggtgttc ctcctcgctt caacggtatt ccgtcccgcc aggtttgcac
     4621 tgtagcctca tcgagtttct gagtcatttc tgtttcaata aatcccgggg cgattacatt
     4681 acaccgaata tttcttgagc caagctctag ggcaacagac ttagaaaaac caataattcc
     4741 agccttagaa gcggcataat tagtttgacc tgcgtttcct tgaaccccga caatcgaact
     4801 catgttgata atactaccgt gtctttgctt gagcatggtt cgttggaccg ccttggtcat
     4861 attaaacaca gactttagat tgacctcgat gactcggtca aaatcttctt cgctgatgcg
     4921 cataagaaga ttgtctttgg taattcctgc gttattaatt aagatgtcaa cactcccaaa
     4981 atcagctaaa acctgggcca ccaaagactc ggcttgatca aattgggctg cgtcactttg
     5041 gtaagctttt actttaacgc cattttgaga aagttcttca gccatggcat tggctgcctc
     5101 tgctgatgaa ttatacgtaa acgccacatg tgccccttga gccgcaaaaa cttccacaat
     5161 acctttccca ataccacggc ttccaccagt aattagggcc actttgtttt cgagtaactt
     5221 catactattt tggtttagtt gttgcgcgtc aatatcgagt acttcagcag ttcggctact
     5281 ttcttaccaa tttctgccgg tgaatcaacg acatgaatac cacatgaacg catgattttc
     5341 tttttagcct gagccgtatc gtcgcttccg ccgacaattg ctccagcatg acccatagtt
     5401 cgtcctgcag gggcagtctc tccagcaata aaaccaacta cgggttttgt gctgccactt
     5461 tgggcatacc attgggcggc atcagcttcg agctgacctc caatctcacc aatcataacg
     5521 acggcttgag tttcagggtc gttaatcagt aaagacaggg cctcttttgt cgtggtccca
     5581 atgatcgggt ctccaccaat accaatggct gtagttatgc caaggccctg acgcacgacc
     5641 tggtccgctg cttcataagt caaggttccc gatttagaaa caattcctac tggtcctttt
     5701 ttgaaaacaa agcctggcat aataccaact ttagcttcct ctggagtaat caccccagga
     5761 cagtttggtc caatcaatcg gcaatcacgg tctttaatat aatctgcagc tttaatcata
     5821 tcggcaacag gaattccttc ggtaatggta ataatgactt tgatgcccgc ctcagccgct
     5881 tccataattg catcggcagc gaacgctggc ggaacaaaaa taatactggt atccgcgcca
     5941 accttatcca cagcctcagc gacagtattg aatacggggc gatctaaatg cgtttgcccc
     6001 cctttacccg gggtaacacc accgaccaca ttggttccgt attcaatcat ttgactggcg
     6061 tgaaaagtcc cttcactccc tgtaaatcct tgaacaataa tttttgaatt cttatttacc
     6121 aatacactca tggtgcgtga aatttttgaa ggttaatgag cggcaaaatt aatcttttac
     6181 cctcgtttaa aaaaggaatt tattgcttct ttggcgatta aataaaggcc aaagtaatta
     6241 cacaggctgc caatctgggg cgcttgcagg ctgactcatc atgtgtcctt tgacaataat
     6301 tccatcacgc acttcccaaa acgcattgaa atgtgagata gccatttcct cttcagggtt
     6361 ttcaatggtc cgcgcataat acgtgcagcg cacggcaacg gtgtttccct ctttgaccac
     6421 atgatgaagg gacaccctta agtcgtcata agtcttgttt atttctttga aaaaggcgtc
     6481 tagttggtca aatcccataa ctactttacc atgactgcta aaccaagtca gctgaagatc
     6541 agaatgaaaa aatctcgaaa caatattggc ctcctcgaca acatgtgcat tataaaatgc
     6601 tttgaccagt ttttttggtc ccattacttc ttttttaatt gttcaacaac ttctggcaac
     6661 tgccgtaggg ccgccaattc tttatacttc tttctaaact cctcggctgg cgtaccaaaa
     6721 taggatttcc cgccttccaa agatttactc acaccacttt gtgctgaaat tatggatcct
     6781 gcacctatag taatggcact ggtaattcct gcttgacccc aaatcgtaac cccatcttcg
     6841 atattgacac agccggccac ccctacttga gacgcaatca aacaatcctt accgatcacg
     6901 gagtcgtggc caatatgcac ctgattatct aatttagctc cttttttaat ggtcgtatct
     6961 ccactgaccc ctttgtctat agtacaagca gcgcctatgt ggacatcgtc ctcaatgagc
     7021 actcggccac tactttgaag tggatcaaag ccttctggtc gttttttata ataaaatgcg
     7081 tctgcgccca aaatacttcc tgagtgaatg actacacggt caccgattac agtgtgatcg
     7141 taaagcacca cattagcgtg gatcaaacag tcttttccga tggtcacatt gttaccgata
     7201 aagcagcccg gttgtattat cgtgtttgag ccaatacttg ccgtttcaca aaccatagcc
     7261 gtagcaggaa caaagggccg aaaatgcgct ttaagcttgt taaaatcccg aaatggatcg
     7321 tctgaaatta aaagcgcctt tccttttgga cagtctactt ctttattgat caaaataacg
     7381 gtagcctccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaaggcctt atcgtaatac tttggatgat
     7561 cgacaaaaac gatatccccg gggcgaacaa catgaatctc attaaagccc tccacaggga
     7621 aatcatcagg cccaacatag tgacaattaa ttaattgtgc aatggttttg agcggatgga
     7681 catggggtaa tttcacagca attatttcat actaaaataa aaaaaaatcc cgccttggcc
     7741 ggtccaaaac gggattaatt ttaaaggatt tgaggaaatt aatccttcat acgctcttga
     7801 tattgac
//
LOCUS       DPUP01000069            5207 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9493,
            whole genome shotgun sequence.
ACCESSION   DPUP01000069 DPUP01000000
VERSION     DPUP01000069.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5207)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5207)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5207
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            197..1240
                     /locus_tag="DHV98_02325"
     CDS             197..1240
                     /locus_tag="DHV98_02325"
                     /inference="COORDINATES: protein motif:HMM:PF02615.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05215.1"
                     /translation="MTETHSKLELKQQRIKINVKEAQFTIQSIFSSIGCTPRVAEQIA
                     EHLIDSSLCGVESHGLMRALQYADQFKSGYIVCDAEPTLKKTANGGHVVDGGGGIGIP
                     AMQVAFEKAMSLASETGISALAVKNVGHTGRCGAFADNAAGQGFLTILIGGGNRKKWR
                     QVAPYGGARAMLPTNPWCIGMPGGLLGPIVLDFATSKIAGGWIYAAKSAGALLPAGCL
                     IDKEGNPTRDPNDYFSGGAILPAGEHKGYGLALIAELIGEAMLGPVATEANWLLICIK
                     TGLYNSHGLLTEISEEILNDMRLCPPAPGFLRVEIPGERERNHKQASDGIIAIPEPTW
                     LQIKNLESSLCAL"
     gene            complement(1398..3362)
                     /locus_tag="DHV98_02330"
     CDS             complement(1398..3362)
                     /locus_tag="DHV98_02330"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00725.20,HMM:PF02737.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HCK05216.1"
                     /translation="MVVNFRQKGPIGIVTIDNPPVNALSQAVRAGLLDAFKQTEALET
                     IEAVLLICAGRTFIAGADISEFGKPLEAPHLSDLINEIEKASKPWIAVLHGNVLGGGL
                     EVALGCHYRIAHSTTKLGLPEVTLGLIPGAGGTVRLPRLIGAVTALEMITSGKPLPAR
                     KALDIGLIDKLSTENIEEVAFEFVFDCILKPLPKPIIDRNLSKTVDKNEWASKVENVL
                     KNLPGQNAPLAAVRSIENNLFLTPLAALAIEKKIFLEQMTDLQSKALQYIFFAERSSG
                     QLSELKGIKPRPLNQIGIVGFDELSSEIAAACLISGLYLMIIEPDKKEETHARKIIAA
                     KLFAAKEDNFMTDSEINIILDRLKFGKNYGELFNMDFVIDAVCETSNLKHEIISILEE
                     VIRPDAIIARLTPKVDFNIFPEQIKDPSRLIIFNFLSLCHNIKLLELIITTSASPDVL
                     ATGFSFGKKIQKITVPVLFEGGPIGTKIISGCLSECYNMIGSGTLPWEIDKALRSFGF
                     SIGIFEMEDFLGLDRFDMTKECQNVKKSLLFHPLELARVLCANGRLGRKSGKGWYDYS
                     SGNAQPDKFVEELILEGLGLDPKNRKVMLDEEIISQALISMKATGLKLLSQGSAKRAS
                     DIDVVMVNGYGFPRYRGGPMFFENHFVPQC"
     gene            complement(3508..5202)
                     /locus_tag="DHV98_02335"
     CDS             complement(3508..5202)
                     /locus_tag="DHV98_02335"
                     /inference="COORDINATES: protein motif:HMM:PF01558.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05217.1"
                     /translation="MHSDIKVFHRRYLQKIQEEIATVKGISIILYDQTCASENRRKRK
                     RGLIADPDKRLFINPDVCEGCGDCGVQSNCVAIQPLETPLGRKRKIDQSVCNKDFTCA
                     DGFCPSFVTVTGGSVRKSKVRFDNLPELVEPDNKPSLNKPYSLLVTGIGGTGVVTIGA
                     LVGMAAHLDGLGSGVIDMAGLSQKGGSVYSHIKLASSPNHIKSIRVPEGNADLMLCCD
                     VVVGSGSQALATLSKSSYALVNIHEQMPREFANDKEFTLPTNLMHSRIANAVEKLNVE
                     FFDASKYATMLLGDSIGANLFTLGVAYQKGLLPLSSQAIERAIELNGTAEKMNKEAFA
                     LGRHWVIDKQRLDALMPKSLVDTSPQNLSELIADRAQKLTSYQSVKYAHKYIEFIGKI
                     ERREYAFEVAENLYKLMAYKDEYEVARLYSDTKFKERLIQEFEGNLKLKIALAPPIFS
                     RRDPSSGKVKKIEFGAWVFPFFKVLKTFKFLRGTLLDPFGHSNERRIERHLIEEYKSM
                     ILAIMDDADPEVALLLAKTPQSILGFGHIKIANINKVKLNQRALSAKLYKHPVGSV"
BASE COUNT         1537 a         1056 c         1014 g         1600 t
ORIGIN      
        1 cctttaatat taataatatt cttttgtgga agggccgtgg ttagacggta ccaagttaaa
       61 tattgcagta aaggtttttt tagaggtttt aaataaacag atttatctta taaatgtaat
      121 tgtataaaaa tctaaaggtc ttcataatta gtaaggacta acaaaaaacc catgtccata
      181 taaggatgta agcttagtga ctgaaactca ttcaaagttg gaattgaaac aacagcgcat
      241 aaaaataaat gtgaaagaag cgcaatttac tattcaaagt attttttctt cgatcgggtg
      301 caccccaaga gtggcagagc agattgccga gcatctaatt gactcaagtc tatgtggtgt
      361 ggaaagtcat ggcttgatga gagctcttca atacgccgac caatttaagt ctggttacat
      421 cgtgtgtgat gcagaaccga cactaaagaa aacggctaac ggtggtcatg tagtagacgg
      481 cggtggcggt attggaattc ccgcgatgca agtggcgttt gaaaaggcaa tgtcattggc
      541 aagtgaaaca ggtatttcag ctcttgctgt aaaaaatgtt ggacatactg gaaggtgtgg
      601 agcatttgca gacaatgctg cgggccaagg gttccttaca attttgatcg gcggtggtaa
      661 ccgtaaaaaa tggcgccaag tagctccata tggtggtgca cgcgcaatgc tacctaccaa
      721 cccatggtgc atcggtatgc caggtggatt attaggtccg attgtattag attttgcaac
      781 ctctaagatt gcagggggct ggatttacgc cgcaaaatca gcaggcgcct tgcttcctgc
      841 gggctgtttg attgacaaag aaggcaatcc aacaagagac ccaaacgatt acttttctgg
      901 aggggctatt ttacccgcag gtgaacacaa ggggtacgga ttagcattaa ttgctgagtt
      961 gatcggtgaa gcgatgttgg ggcctgtcgc gacagaagcc aattggttgt taatatgcat
     1021 taaaactggt ctttataatt cgcacggtct cttgactgaa atttctgaag aaattcttaa
     1081 tgacatgcgc ctttgtccac ctgctcctgg cttcttacgt gttgaaatac ctggcgaacg
     1141 agaacgaaac cataagcagg catctgatgg aataattgct attcctgaac caacttggtt
     1201 acagataaag aacttggaaa gctctttatg cgcactttaa aaaattaaat aaataactca
     1261 ctcatatagt atagccattt gctggaaata cagtttattt ttaatgatcg aactttttat
     1321 ttagataaat ctttgttttt taattttaat tttattaagg cgttttatat cgaattttct
     1381 ggatgatttc cagttgacta acattgaggg acaaaatggt tttcaaaaaa catagggcca
     1441 cctcgatatc gtggaaaccc atagccattg accataacaa catctatatc actagctctt
     1501 tttgctgatc cttgtgacag taatttcagc cccgtagcct tcatacttat aagagcttgg
     1561 ctgataattt cttcatccaa cattactttg cgattttttg ggtccaatcc aagtccttct
     1621 aaaataagtt cctctacaaa tttatcgggt tgagcatttc cgcttgaata atcataccaa
     1681 ccctttcccg atttacggcc aaggcggcca ttcgcacaca aaacgcgggc cagttccaaa
     1741 gggtgaaata aaaggctttt tttcacattt tgacattctt tggtcatatc aaacctatca
     1801 agccctaaaa aatcttccat ctcaaatatt ccgatagaaa aaccgaaaga ccgtagagct
     1861 ttatcaattt cccacggaag ggtacctgag cctatcatat tatagcactc actaagacat
     1921 ccggaaatta tcttagtacc tatgggccct ccttcaaata aaacggggac agtaattttt
     1981 tgaatttttt ttccaaaaga gaaccccgtt gcaagaacgt cgggactcgc tgacgtagta
     2041 ataatcagct ccaaaagttt tatattgtga cataaagaca aaaaattaaa aataataagc
     2101 ctggatggat ctttaatttg ttcagggaaa atattaaaat ccactttggg cgtcagcctt
     2161 gcgatgattg catcagggcg tattacttct tccagtatgg agataatctc gtgttttagg
     2221 ttggaggttt cacaaactgc atcgatgaca aaatccatat tgaaaagctc accgtaattc
     2281 ttcccaaact taagacgatc aagtatgata tttatttctg aatccgtcat gaaattatct
     2341 tcttttgcgg cgaaaagttt tgccgctatg atttttcgag catgggtctc ttcttttttg
     2401 tctggctcta ttatcatcaa ataaaggcca gaaattaaac atgccgccgc aatttctgag
     2461 cttaattcgt cgaatcctac aatgccgatt tgattcaagg gacgtggttt aataccttta
     2521 agttctgata attggcctga tgaacgctct gcaaaaaaaa tgtactgaag tgctttagat
     2581 tgaagatcag tcatttgttc taaaaatatt tttttttcta ttgcaagagc agctaacggg
     2641 gttagaaata gattattttc aatggatcgg actgcagcaa gtggagcatt ctgcccaggt
     2701 aaatttttca aaacattttc aactttagac gcccactcat ttttatctac agtctttgaa
     2761 agattgcgat caataatagg tttaggtaag ggtttcagaa tgcagtcaaa aacaaattcg
     2821 aaggccactt cttcaatatt ttccgtcgaa agtttgtcta tcaagccaat gtccaaagcc
     2881 ttgcgtgccg gcaaaggctt accacttgta atcatttcaa gcgcagtaac agcgcctatt
     2941 aaacgaggta gtcgtaccgt acctccagcg ccaggtataa ggcctagcgt cacctcagga
     3001 agcccaagtt tagtagtgct gtgcgctata cgatagtgac atccaagtgc aacctcgagt
     3061 ccaccgccaa gcacgtttcc gtgcaaaaca gcaatccacg gcttacttgc tttttcaatt
     3121 tcatttatga gatcagataa gtgtggtgct tcgagtggtt ttccaaattc tgaaatatcg
     3181 gcgcctgcta taaatgtacg tcccgcacat atcaataaaa cagcttcaat tgtctcaaga
     3241 gcttctgttt gtttgaatgc gtcaagaaga cctgcccgca ctgcttgaga cagtgcatta
     3301 acgggcgggt tatctatagt cacaatgcca attggacctt tctgcctaaa gtttaccacc
     3361 atattttatt ttgttcctca agttatctta tgcatggaca acgagttttt catttatttt
     3421 aagtttttat ttttagccaa taacgttgaa ataaataatt ataattaaac atgttataaa
     3481 aagtcagctg cattaagtta taaaaattta aacagacccg actgggtgtt tatataattt
     3541 ggctgataag gctctttgat ttaacttaac cttgttaata ttagcaattt ttatatgccc
     3601 aaatcctagt atgctttgcg gggtttttgc taaaagaagg gccacctctg gatcagcatc
     3661 atccatgatt gccaaaatca ttgatttata ttcttcaatt aagtgacgtt cgatgcgccg
     3721 ctcattcgag tgcccaaatg ggtcgagtaa ggttccacgt aaaaatttga aagtttttaa
     3781 cactttaaaa aatggaaaaa cccatgcgcc aaattctatt ttttttactt ttcctgaaga
     3841 tggatctcgg cgagaaaata ttggtggggc aagagctatt ttgagcttca gattgccttc
     3901 aaactcctga attaaacgtt ctttaaattt agtatctgaa tagagccgag ccacctcgta
     3961 ttcatcctta taagccatta atttatatag attttctgca acctcaaatg catattcacg
     4021 tctctcaatc ttgccaatga attcgatata tttgtgtgca tactttacac tttgataact
     4081 cgtcaatttt tgggcacggt cggctatgag ttcactcaaa ttttgcggtg atgtgtctac
     4141 taagcttttg ggcatcaatg catcaaggcg ctgtttgtcg ataacccaat gccgtcccaa
     4201 ggcaaaagcc tctttgttca ttttttcagc agtcccatta agttcaatag ctcgttctat
     4261 agcttgactt gaaagtggta atagtccttt ttgataagcg acgcctagtg taaaaagatt
     4321 tgctccaata ctatcgccta gcaacatcgt tgcatattta ctcgcatcaa aaaactctac
     4381 atttaatttt tcaacggcat tcgcaattcg gctgtgcatt aagttcgtag gtaaagtaaa
     4441 ctctttatca tttgcaaatt cacgaggcat ttgttcatga atattgacca atgcgtaact
     4501 agattttgat aaagtggcta atgcttgact tcctgaacca accacaacat cgcaacaaag
     4561 cattaggtct gcattgcctt ctgggacacg gatagacttt atgtgattgg gactggaggc
     4621 caactttatg tgcgaataaa ctgagcctcc tttttgggaa aggccagcca tatcgataac
     4681 tccactaccc aacccatcta gatgggcggc catgccaact aacgcaccga ttgtaacgac
     4741 cccagtacct ccgatccccg ttaccaaaag agaataaggt ttatttaatg aaggcttatt
     4801 atctggctct accaattcag gtaaattgtc gaaacgaact tttgacttac gtactgaccc
     4861 accagtaacc gtcacaaaac ttggacagaa gccatcggcg catgtgaaat ctttattgca
     4921 tacagactga tcaatttttc gcttccgtcc aaggggtgtt tccaatggct gtatcgcaac
     4981 acaattggac tgtacaccac agtcgccgca tccctcacaa acatcgggat tgataaataa
     5041 acgtttatct gggtcagcta ttaacccacg tttgcgtttg cgccgatttt cagaggcaca
     5101 cgtttgatcg tacaaaataa tactaatacc tttaacagta gcaatctcct cttggatttt
     5161 ttgtaaatag cggcggtgga aaactttaat atcactgtgc aatcttg
//
LOCUS       DPUP01000070            4957 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_19363,
            whole genome shotgun sequence.
ACCESSION   DPUP01000070 DPUP01000000
VERSION     DPUP01000070.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4957)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4957)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4957
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            86..>1125
                     /locus_tag="DHV98_02340"
     CDS             86..>1125
                     /locus_tag="DHV98_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCK05218.1"
                     /translation="MKPIESISVFDMLKIGVGPSSSHTLGPWRAGLQFLKLILNKKAE
                     TKVLRIRVDLYGSLSLTGKGHATDIALMMGLSGADPVTYPIDQIAPEVSRIKAEKNIQ
                     LDFTMALHELQAAGLTQRTLSPEEVSSHKIIFDPATDIVFHRSFLDFHPNGMCFTAEL
                     QAGKTLEQTYYSIGGGFVVTQERKRGKRKIEALSHFSYPIQKGTELLEYCAATGLKVS
                     EIVLANERSLRSDQEINDGLDQIWATMLDSMYVGCHTEGILPGGLNVVRRAYDTHKSL
                     IGQTPYNDPVEWIKAIRSTEVKFRQILKWVSCFALAVNEVNASLGRIVTAPTNGSAGV
                     IPAVMMYYMVIE"
     assembly_gap    1126..1222
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1223..1705
                     /locus_tag="DHV98_02345"
     CDS             <1223..1705
                     /locus_tag="DHV98_02345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006795071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HCK05219.1"
                     /translation="YYMVIENHDANLEDVRQYLLVAGEIGSLFKKGATISAALGGCQA
                     EIGVSSAMAAGALTELMGGTPAQVLMAAEIAMEHHLGLTCDPIGGLVQIPCIERNAMG
                     AIKAINACEMALDADPTKAKVPLDKVIATMWETAQDMSTKYKETSTGGLAIQVNVSDC
                     "
     gene            1802..2636
                     /gene="panB"
                     /locus_tag="DHV98_02350"
                     /pseudo
     CDS             1802..2636
                     /gene="panB"
                     /locus_tag="DHV98_02350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295801.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
     assembly_gap    2434..2510
                     /estimated_length=77
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2664..3362
                     /locus_tag="DHV98_02355"
     CDS             2664..3362
                     /locus_tag="DHV98_02355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HCK05220.1"
                     /translation="MGHTQHSTPDNLQVIYQDNHLIVVNKRPGDIVQGDKTGDLPLSE
                     VVKQYIAVKYNKPGAVFLGVVHRLDRPTSGLVVFARTSKALARLNKMFAERETKKTYW
                     AMVKTTPDPLEGRLEHYLLRNPKQNKSYAHQKPVPEAKHAVLNYRTLAQSDHYTLLEI
                     DLETGRHHQIRAQLAAIGCPIKGDLKYGAQRSNQDGSIHLHARALEILHPVQKEPMTF
                     TAPVPEEALWQSVG"
     gene            complement(3368..4933)
                     /locus_tag="DHV98_02360"
     CDS             complement(3368..4933)
                     /locus_tag="DHV98_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HCK05221.1"
                     /translation="MVVQIYCSALMGINAQKVTIEVHCTLGVGYHLVGMADHAVREST
                     YRIAGALQSVGYKIPGKKFIINMAPADLRKSGAHYDLPLAIGILLASNQLTASVDLGQ
                     CLLLGELALDGSLRPLKGVLPIVLGAKNQGFTSVILPKENATEASIVPGLKIYGMRHL
                     SEVLALIQGKYSEPKSSNTDQAGCPGPAHPTNVIKHNDFDFAMVRGQETVKRALEIAA
                     SGGHNVLMMGPPGSGKTLLARCLPSILPPLNYQEALETTTIHSVMGQDLSQGLVFQRP
                     FRSPHHSISDKALIGGGRYPMPGEISMAHNGVLFLDELPEFTRKTLEALRQPIEEGQV
                     HLSRAQYSVTYPSTVMLIGSMNPSNEGDGPLSDAYLKKISGPLLDRIDLHVEVPAVSF
                     EKLSNAQASESSAAIRRRVLIARTKQVERFSDARTALRPLEHTQTNAGKKPLHCNAQM
                     TIKHIERYCPLENSVNQLLEQAMKHLGLSARAYHRLIKVACTIADMANSVSIKPEHMA
                     EAIQYRILDRMRN"
BASE COUNT         1266 a         1194 c         1125 g         1198 t
ORIGIN      
        1 gtcgcgaaaa aataaactcc gcggtacatc aaccaatagt cctgcgccct atatttgcaa
       61 gagtaacgac gaccaaaacc actgcatgaa acccatagaa agtatcagcg tatttgacat
      121 gctcaaaatc ggggttggcc cctcgagttc ccataccttg ggtccttggc gcgctggcct
      181 tcagttttta aaactgattc tcaacaaaaa agccgagacc aaagtgcttc gaattcgcgt
      241 ggatttatac ggttccctat cgcttaccgg caaaggacac gccacggata tcgctctgat
      301 gatgggcctc tctggtgcgg atccagtgac ctaccctatt gatcaaattg ccccagaggt
      361 ttcgcgcatc aaggctgaga aaaatatcca actcgacttt actatggccc tgcacgaact
      421 tcaggcggca ggactcaccc agcgcacctt gagtcccgag gaagtttcgt cccataaaat
      481 aatttttgac ccggctacag acattgtttt tcaccgcagc tttttggact ttcacccgaa
      541 cggaatgtgc tttaccgctg agctccaggc ggggaagacg ctcgaacaaa cctactactc
      601 tataggcggg ggttttgtag tgactcaaga gcgtaagcgc ggtaaacgca aaattgaagc
      661 gctgagccat ttttcttatc cgatccaaaa aggaaccgaa ctccttgaat attgcgcggc
      721 aacagggctt aaagtcagtg aaatagtgct ggccaatgag cgttccctgc gttcagacca
      781 agaaattaat gacgggttgg accaaatttg ggccaccatg ctcgactcca tgtatgtagg
      841 atgccacacc gaaggaatac ttcccggtgg gctcaatgtc gtccgccgtg cctacgacac
      901 tcataaaagc ctcatcggac aaacccctta taacgacccc gttgagtgga ttaaagccat
      961 tcgcagtact gaagttaaat tccgtcaaat tctaaaatgg gtcagctgtt ttgcgctggc
     1021 cgtaaatgag gttaatgctt cactcggacg catcgttacg gcgcccacta acggaagtgc
     1081 tggggtgatc cccgcagtga tgatgtatta tatggtcatt gaaaannnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nntattatat ggtcattgaa aaccacgacg cgaatcttga
     1261 ggacgtgcgt caataccttt tggttgctgg agaaataggc agcctgttta aaaagggggc
     1321 caccataagt gcagcccttg ggggctgcca agccgagatc ggcgtgtcct cggccatggc
     1381 cgctggggcc ttgaccgagc ttatgggcgg aactcctgct caagtgttga tggccgcaga
     1441 aattgccatg gaacaccatt tgggactcac ttgtgatcct attgggggat tggtgcaaat
     1501 cccttgtatt gagcgcaatg ccatgggcgc cattaaggcc ataaatgcct gcgagatggc
     1561 gcttgatgcc gatccaacca aggctaaagt ccctttggac aaagtcattg ccaccatgtg
     1621 ggagacggcc caggacatgt ccacaaaata caaagagacc agcactggcg ggctcgctat
     1681 acaggtgaat gttagcgatt gttaatgctc cgacttgagg cttagcgata cggctaattg
     1741 atacagtgag tattaactct cagcattaat tagtaatttt attccccaca aaacaaaccc
     1801 tatgtctaca gcaaaaaaag actacaaacg catcacggta aaaaccttgg tggatatgaa
     1861 agagcaagga cagaagattg ccatgctcac agcctatgac tttaccatgg ccaaaatcgt
     1921 ggatgctgca ggcattgatg ttattttggt cggggattcg gcctccaatg tgatggctgg
     1981 acacgaaacc acccttccca tcaccctgga tcagatgatt tatcacgctt cttcggtggt
     2041 ccgtgggatt gaacgggctt tggtcgtcgt tgatttaccc tttggaagtt atcaaagtga
     2101 ttccaaagaa gctttgcgct cggcgattcg aatcatgaaa gaaagcggtg cccacgccgt
     2161 gaaactcgaa ggcggtaagg aaatcaaaga ctccattaaa aaaatcctga acgctggaat
     2221 tccggtcatg ggacatttgg gactcacccc ccaatcgatt tataaatttg gaacctatac
     2281 agtgcgggcc cgcgaggaag ctgaggctca aaaacttcgc gaagacgcct taatgctcga
     2341 aaaaatgggt tgttttgcca ttgttttgga aaaagttcca gccgcattgg ccacagaagt
     2401 cgcccaaagc gttagcgtac cggtgattgg tatnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn catgaattct
     2521 caccgcgctt tttgcgtcgt tatttggatc tttataacga catgagtaac gcctttggcc
     2581 agtatgtcag cgatgtaaaa tctaaggact tccctaacga tagcgagcag tattaaaccc
     2641 gggacttcaa ccgcttaaaa gtcatgggtc atacgcaaca ttccaccccc gataaccttc
     2701 aagtcatcta ccaggacaat caccttattg tagtcaataa gcgcccgggt gatatcgttc
     2761 aaggggataa aacaggggat cttcccctat ctgaagtggt caagcagtac atcgcggtaa
     2821 aatacaacaa acctggggct gtgtttttag gagtggtgca tcgattggat cgcccgacct
     2881 ctggactagt ggtttttgca aggacgtcca aagcccttgc gcgactcaat aaaatgtttg
     2941 ccgagcgaga aaccaaaaaa acctactggg ctatggtcaa gactacccca gatcctttgg
     3001 aggggagact cgagcattat cttttgcgca accccaagca gaataaatct tatgcgcatc
     3061 aaaaacccgt tccagaggcc aaacacgctg tactgaatta ccgcactttg gcccagagtg
     3121 atcattacac cctattagaa atcgatttag aaacagggcg tcaccatcaa attcgcgccc
     3181 agctggccgc gatcggttgc ccgattaaag gggatttaaa atacggcgcg cagcgctcta
     3241 atcaggacgg cagcatacat ctgcatgccc gggcccttga aattttgcat cctgttcaaa
     3301 aagagcccat gacttttaca gcgccggtcc cagaagaggc cctttggcag agtgtaggct
     3361 aaataaatta gttgcgcatt cgatccaaaa ttcggtattg aatggcttct gccatatgct
     3421 caggtttgat acttacgctg ttcgccatat ctgcaatcgt acaggctacc ttgatcaggc
     3481 ggtgatatgc acgagccgag agccccagat gtttcatggc ttgttctaag agttgattta
     3541 ccgaattttc taatgggcag tatcgctcta tgtgtttgat cgtcatttgt gcattacagt
     3601 gcaagggttt tttgcccgca ttcgtttgag tgtgctctaa cgggcgcagc gctgttcttg
     3661 catcactaaa tcgctcaact tgcttggtcc gcgcaattaa tacccgacgc cgtattgcag
     3721 cactagactc actggcctgt gcattactta acttttcaaa gctaacagct ggaacttcta
     3781 catgcagatc aatacggtcc aagagcggac ctgaaatctt tttaagatag gcatcactta
     3841 gtgggccatc accctcattc gatgggttca tgctgcctat gagcatcacg gtactgggat
     3901 aagtcacgct gtattgagca cgactcaaat gcacctgccc ttcttctatg ggttgacgca
     3961 gggcctcaag tgtcttgcgg gtaaattcag gtaattcatc cagaaacaaa acgccattat
     4021 gcgccataga aatttcacca ggcatgggat atcttccgcc accgatgagt gccttatccg
     4081 atattgagtg gtggggactt cgaaagggcc tttgaaaaac aagtccttga cttaaatcct
     4141 gtcccataac gctgtgtatg gtggtagttt ccaaagcctc ctgataattc agcggaggta
     4201 aaatactcgg aagacaacgt gccaagagtg ttttgccact gcccggtggc cccatcatca
     4261 aaacattatg cccgccactg gccgcaatct ctagcgctct ttttacggtt tcttggcctc
     4321 ggaccatggc aaagtcaaag tcgttatgct ttataacatt tgtcgggtgt gccgggcctg
     4381 ggcagccagc ctggtctgta ttactcgatt taggttctga gtatttccct tgaattagcg
     4441 ccagaacctc gctaagatgc cgcattccat aaatttttaa accggggaca attgaggcct
     4501 ccgtggcgtt ctctttcgga agaatcacag aagtaaatcc ttgattcttg gcccccaaaa
     4561 caatcggcaa aacccctttt agtgggcgca aagaaccatc tagggctaat tccccgagca
     4621 gcaaacattg acctaaatcc acagaggccg ttaattgatt cgaagccagc agtatcccta
     4681 tggccaaggg caaatcgtag tgggcgccag acttacgcaa atcggctgga gccatattga
     4741 tgataaattt cttgcccggt atcttgtatc ctacgctctg caacgcccca gctattctat
     4801 acgtactctc acgcaccgcg tgatccgcca tccccactaa atgatacccc acacctaggg
     4861 tacaatggac ctcaatagta actttttgcg cattaatccc catgagagcg ctgcagtaga
     4921 tttgcactac cataacttat gtttttaaag tcgggga
//
LOCUS       DPUP01000071            7085 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17998,
            whole genome shotgun sequence.
ACCESSION   DPUP01000071 DPUP01000000
VERSION     DPUP01000071.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7085)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7085)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7085
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(132..593)
                     /locus_tag="DHV98_02365"
     CDS             complement(132..593)
                     /locus_tag="DHV98_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008634188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HCK05222.1"
                     /translation="MTFDTADLILLEALQTDCKQTHKQLALKTDLSVTAVHERIKKLE
                     RHGIIKQYVALLDPEQIALGFMVFCHVKLVQHAKSSLSTFESDIMGLTEVVECFHVSG
                     SYDYLLKVMVRDMAHFRSFLVNKLTSLKSIASTESSFVITQVQNTTKLMPA"
     gene            745..>881
                     /locus_tag="DHV98_02370"
     CDS             745..>881
                     /locus_tag="DHV98_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCK05223.1"
                     /translation="MSFDPANKIQDLQYFGEFGGVNPSISDSSTYTFLSAKTMFDTFE
                     G"
     assembly_gap    882..1075
                     /estimated_length=194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1076..2143
                     /locus_tag="DHV98_02375"
     CDS             <1076..2143
                     /locus_tag="DHV98_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020081610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HCK05224.1"
                     /translation="NAEGCYLYSRHSTPSNLYLGQALAAMEGTETATVAATGMGAITP
                     ALLQYCGQGDHIVSSRTIYGGTYAFLKNFTPRLGIETSFVDITNLEAVERAITPNTKV
                     LYCESVSNPLLEVADITALAALAKKHGLALMVDNTFAPLSIAPYQLGADIVMHSLTKF
                     INGSSDTMGGVICGTQEFIDQLRNVNDGACMLLGASMDSLRAASILKNLRTLHIRIKQ
                     HSHNAMYLAQKFEADGLKTVYPGLKSHPSHELFSRMMNPEYGYGGMLTIDAGNLETAN
                     KLMELMQERNLGYLAVSLGFYKTLFSAPGSSTSSEIPLEEQAEMGLSDGLIRFSIGLD
                     NDIERTYQMMRQCMVEVGVLS"
     gene            complement(2183..3136)
                     /locus_tag="DHV98_02380"
     CDS             complement(2183..3136)
                     /locus_tag="DHV98_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008463607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05225.1"
                     /translation="MFVVLLLYPCFIQVLWAQVGIGTIHPDPSAILDISSPNQGVLLP
                     RVELKDQSKWGLNSLHQAPDGLVVYHTVDSLFGGRGLYVFDGVSWRGLAYNRSEQEQW
                     QWTNSGVHYGAGGVYIGANAATNNDLWLSRRLIDWDNSNYYVDPAAGSVLNEIKLDPG
                     STTDTSLYWDRPDTGFFAPTTGAIGLSVSGNLRWFLSSEGRFGISTTEPQADLDVSGS
                     IKLGAQGSVIQGVKRFGQMHIIPPDWPQDSWTIEMDSETLAAMNIPLSAYIQGQIRGT
                     LSRELRVLSQGMDEQGYFLTLTGINPNLAGQALELDFLVVY"
     gene            3330..>4428
                     /locus_tag="DHV98_02385"
     CDS             3330..>4428
                     /locus_tag="DHV98_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020081608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HCK05226.1"
                     /translation="MNPQEHSKEPRVKLSIIQALIPVFVLVALLFINVIYAFGDDALS
                     GSNQFLLLIGGAVAAVVGVYNGISFDKMIDEVADNLKSTTGAILILLMVGALAGTWLL
                     SGIIPTMIYYGLSLLKPSIFLVSTVVICAIISIATGSSWTTSATVGIAMIGIANALGI
                     DSGMAAGAVISGAYFGDKLSPMSDTTNLAPAMAGTDLFTHIKYMTYTTVPSFVITLLF
                     FGVLGVTIDPQGESQTTEMLAAIDTAFMVSPWLFVVPAIVILMIVKKVAPLIALFTGT
                     LLAAAAALWMQPELVTLIGGGKDLDVITAYKGVMNAITVSIEIPTTYAPLNDLFTSGG
                     MAGMLDTIWLIICAMVFGGIMEAIGALSSISE"
     assembly_gap    4429..4554
                     /estimated_length=126
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4555..4881
                     /locus_tag="DHV98_02390"
     CDS             <4555..4881
                     /locus_tag="DHV98_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007138628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HCK05227.1"
                     /translation="ASTVASCLAINIAASDQYLAIVVPGKMYAKAYKEKGLAPENLSR
                     TLEDSGTVTSALIPWNTCGAYQSGVLGVDTLSYAGYAIFNWISPFMTLLFAAFRIKIR
                     QIAHAK"
     gene            4937..5437
                     /locus_tag="DHV98_02395"
     CDS             4937..5437
                     /locus_tag="DHV98_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005390141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HCK05228.1"
                     /translation="MANITLGGTPTTTHGNLPELGEKCPDFTLISKDLNTVHLNDFAG
                     KKLVLNIFPSVDTGVCSAAARTFNEHASKYPDTVILCISRDLPFAQARFCSADGIEDV
                     EVLSDFKTRKFGQDYGVEIESGAFAGLLARAVVVTDANHSVIYTELVPEIGQVPDFES
                     ALKALS"
     gene            5438..5797
                     /locus_tag="DHV98_02400"
     CDS             5438..5797
                     /locus_tag="DHV98_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018943255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCK05229.1"
                     /translation="MRPKQSVVQAIKVALRGMRILLAERAFRIQLTIGIGITAMGFYF
                     EIESWAWAAQTLAIGLVLMAEGINTALERIADFIQPNFDPKIGRIKDMAAGFVSIAAI
                     VSLIIAVIIYSEKLTLL"
     gene            5860..>6824
                     /locus_tag="DHV98_02405"
     CDS             5860..>6824
                     /locus_tag="DHV98_02405"
                     /inference="COORDINATES: protein motif:HMM:PF13491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HCK05230.1"
                     /translation="MFFKRQQKKPTKTKAKAQSWTLSRQQSVLFGGFLTFFGVALIIS
                     FASYFISWQMDQSLVGTFDKTNPADNYLSHLGNTLGHLFIYNGFGLAAFILAGLFIVS
                     GLYLFFNLATKPLRKFWFWGLYLMIWLSLCFGFFAEHKPMLGGVVGFEISDVLQGYMG
                     ATGLGLFLGFTGLIYLVLRLKWTPDSLVQWIKNRPRKIKGAVAEANDSIQELSRQHEA
                     PSEGFDEQPQTVTFDQDEPAEPVVLEDNHRSEGPSDDAVPEHNIADKEPEIKKTPIQI
                     ISGSDDGVALEIETTKEEVSLSTSEQLVQDFGTFDPTLELKNFKFP"
     assembly_gap    6825..6851
                     /estimated_length=27
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1849 a         1491 c         1517 g         1881 t
ORIGIN      
        1 gctcttccga ccaattacca ctacatcgta attactcatt gtattgtgtt tttatttaaa
       61 ctggtgcaaa gttacgacac tgggtagcaa aagccaatgc tcaataaaga aattttaagc
      121 gggataaacc tctaagcggg catgagcttg gttgtgtttt ggacctgggt aatcacaaaa
      181 gaactttcgg tacttgcgat cgatttcaaa ctggtcagtt tattgaccaa aaaagaacga
      241 aaatgagcca tatcgcgcac cataaccttg agcaagtaat cataagaacc cgatacgtgg
      301 aaacattcca cgacctcagt cagacccata atgtccgatt caaaggtact cagggaggat
      361 ttggcgtgct gcacgagctt tacgtgacaa aacaccataa agcccagggc gatttgttcc
      421 ggatcgagca aagccacata ttgtttgata ataccatggc gctccaattt cttgatgcgc
      481 tcatgtacgg cggtaaccga taaatcagtc tttaatgcca gttgtttatg ggtttgctta
      541 caatcggtct gtaaggcctc gagtaatatt aaatctgcgg tgtcaaaagt catgaccaaa
      601 aaatattcta tggttaattc ttcaaaaata ccattttaga aattatttct atataaatat
      661 taattaacca attaattttc taaataatac cagtcatatt gttaatcaat ccctcttttt
      721 atagatttga taaaaaccta tactatgtcc tttgatccag caaataagat acaagacctt
      781 caatattttg gagaatttgg cggggtaaac ccgagtattt cagactcatc gacctatacc
      841 tttttatcgg ccaaaaccat gttcgacacc tttgaaggca annnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnaatgc
     1081 agaaggttgt tatttgtatt cccgacacag cacgccgtct aacctttatc tcggccaagc
     1141 cttagccgct atggaaggaa cagaaaccgc tacggttgcc gctacgggga tgggcgcgat
     1201 cacaccggcc ttgctccagt attgcggcca aggggatcat atcgtctcga gccgcaccat
     1261 ttacgggggc acctatgctt ttttaaagaa ctttacccct cgtctgggca tcgaaacaag
     1321 ttttgtggac ataaccaatc ttgaagcggt ggaacgagcg ataaccccca acacaaaagt
     1381 gctttattgc gagagtgtca gcaatcctct tttggaagtc gccgacatca ccgcattagc
     1441 tgcactggcc aaaaagcatg gactggcact gatggtggac aacaccttcg ctcctttgag
     1501 tattgcgccc tatcaactcg gtgcggatat tgtgatgcac agcttgacca aattcatcaa
     1561 cggaagcagt gacactatgg gtggtgtgat ctgtggcact caagaattta ttgatcaact
     1621 gcgcaatgtg aatgatggcg cgtgtatgct cttgggggcc agtatggaca gtctgcgtgc
     1681 cgcctcaatt ttaaaaaatc tcagaacgct tcatattcgg attaaacaac acagtcataa
     1741 cgccatgtat ctcgctcaaa agtttgaggc cgatggctta aaaactgttt atcctggtct
     1801 aaagagccat cccagccatg aattatttag ccgcatgatg aatcccgagt acggctatgg
     1861 cggtatgctg accatagacg cagggaatct cgaaacagcc aataaactca tggagcttat
     1921 gcaagaacgc aacctaggct acctggcggt gagtttagga ttttataaga ccttattcag
     1981 cgccccgggc agttccacct cttctgagat tcctcttgag gaacaagcag aaatggggct
     2041 tagcgacgga ctgattcgtt tttcaattgg gctggataac gacatcgagc gcacctatca
     2101 gatgatgcgt cagtgtatgg ttgaagtggg cgtcttgtct taatagaggc gttaacctgc
     2161 catttttgtt gtgttgatta aatcaataga caaccaaaaa atctaattcc agagcttgtc
     2221 cggcaaggtt cggattaatt cctgtgaggg taagaaaata accttgttca tccattcctt
     2281 gactcaggac cctaagttct cgtgaaagcg taccccgaat ttgaccttgt atataagcag
     2341 ataaaggaat attcatggcc gccagtgttt cggaatccat ttctatggtc caagaatctt
     2401 gcggccaatc cggagggatt atatgcattt ggccaaatcg ctttacgccc tgaatgacac
     2461 tgccctgagc accgagcttt atacttccgc ttacatccaa atctgcttgc ggttctgtcg
     2521 tactgatccc aaagcgcccc tctgaactta agaaccagcg cagattaccg gacacagaaa
     2581 gcccgattgc tccagtggtc ggagcgaaaa atccggtatc agggcggtcc caataaaggc
     2641 tggtgtcggt ggtcgagccc ggatcgagtt ttatttcgtt aaggacggat cccgcagcgg
     2701 ggtccacata ataattactg ttgtcccagt caattaaacg acgactcagc cagagatcat
     2761 tattggtggc cgcattagcg ccgatataaa ccccacctgc gccatagtgt acccctgagt
     2821 tggtccattg ccattgctct tgttcagaac ggttataagc caaaccccgc catgaaaccc
     2881 catcgaaaac ataaagtccg cgccccccga acaaactgtc cacggtatga tacaccacaa
     2941 gtccgtcagg cgcttggtga aggctattca aaccccattt ggactggtct ttaagctcaa
     3001 ctcgcggcag caacactcct tgatttggac tggagatgtc taaaattgca ctaggatccg
     3061 gatggatggt cccaatacct acttgtgccc acagaacttg aataaaacaa gggtacagta
     3121 acaaaaccac gaacaatgat ttccttattg ataaagaact tggcgtgaaa aacataataa
     3181 aaatgactgt tgtgtgggag tcctgagttg caaagcaagg acacgcaaac aacgaacaca
     3241 aataagcctt gtgaggattc atgaatccac cctataattt gcaaagtcat agacaaaatc
     3301 gtaacattac acaagcaacg attttaccta tgaatcctca agaacattca aaagagcccc
     3361 gcgttaaatt atccataatt caggctttaa tccccgtatt tgttttggtc gctttgttgt
     3421 ttatcaatgt gatctacgcc tttggagacg atgccttaag cgggagtaat cagtttttat
     3481 tgttgatcgg tggtgcggtg gctgccgtag tgggggtcta taatggcatt tcttttgaca
     3541 agatgatcga tgaagtcgct gataatctaa aaagcactac tggggcgatt ctaatactgc
     3601 tgatggtcgg tgccctggct ggtacttggc ttctaagcgg aatcatcccc acgatgatct
     3661 actatggttt aagtctttta aaaccttcta tttttttagt ctccacggta gtcatttgtg
     3721 ccattatttc tattgccacg ggcagcagct ggacgacttc tgcaaccgta ggtattgcca
     3781 tgattggtat tgccaatgcc ctcgggatcg attcgggaat ggcggccggt gctgtaattt
     3841 ctggggccta ttttggagac aagctctccc ctatgagcga cacgactaat ttggctcctg
     3901 ctatggcggg aactgatttg tttacccata ttaagtacat gacctacacg acggtgccga
     3961 gttttgtgat caccctctta tttttcggag ttttaggcgt gaccattgat cctcagggtg
     4021 aatcgcaaac caccgaaatg ctcgccgcta ttgacactgc ctttatggtg agtccttggt
     4081 tatttgtggt tccggctata gtcatcttaa tgatcgtcaa aaaagtcgct ccactgatcg
     4141 ccttatttac tgggacactt cttgccgctg cggccgcgct ttggatgcaa cctgaattgg
     4201 tcaccttaat cggcggtgga aaagatttag atgtgattac cgcctataaa ggggtgatga
     4261 acgcgatcac cgtatcaatt gaaattccga ccacttatgc tccgctaaat gacttgttta
     4321 cctccggagg tatggctgga atgttggata ccatttggtt gattatttgc gcaatggttt
     4381 ttggcggaat tatggaggcg atcggtgcct tgtctagtat ttctgaagnn nnnnnnnnnn
     4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngccagt
     4561 acggttgcca gttgtttggc catcaatatt gctgcaagtg atcaatactt ggccattgta
     4621 gtgcctggta aaatgtatgc caaggcctac aaagaaaaag gcttagctcc tgaaaatctc
     4681 tcaaggactt tagaagacag cggtactgtt acctcggcat tgattccttg gaacacttgt
     4741 ggggcctatc aaagcggggt gctcggcgtg gacaccttgt cttatgcggg ttatgcaatt
     4801 ttcaattgga tcagtccgtt tatgacccta ctgttcgctg cgtttcgcat aaaaattaga
     4861 caaattgctc acgcaaagta atatgactga atatcatctt agaacaagaa aaaaaaagaa
     4921 tataaaagaa aaaactatgg caaacataac cctcgggggc accccaacca ccactcatgg
     4981 caacctccct gaattaggag aaaaatgccc tgatttcaca ttaattagca aagacttaaa
     5041 taccgtccat ctcaatgatt ttgcgggtaa aaagctcgtg ttgaatattt ttcctagtgt
     5101 tgatactgga gtttgtagtg cagcggcacg cacgtttaac gagcatgcca gcaaatatcc
     5161 cgacacggtt attttgtgta tttcaagaga tcttccgttt gcacaagctc gtttttgtag
     5221 tgccgatggt attgaagatg ttgaagtctt aagtgacttt aaaacaagga aatttggaca
     5281 ggattatggt gtcgaaattg aatcgggagc ctttgcagga ctgcttgctc gggccgttgt
     5341 ggttaccgat gcaaatcaca gtgtaattta cacagagctc gtgccggaga ttggtcaggt
     5401 ccctgatttt gaaagcgcac tcaaggcctt gtcataaatg agacccaaac aaagtgtcgt
     5461 tcaagccata aaagttgccc tacgcggaat gaggatttta ttggccgaac gggcctttcg
     5521 tattcagctg actataggca ttggcatcac tgcaatgggt ttttattttg agatagagtc
     5581 ttgggcttgg gccgcacaaa cccttgccat tggtttagtg ctcatggccg aagggatcaa
     5641 tacggcacta gaaagaatcg cagattttat tcaacctaat ttcgatccaa agattggacg
     5701 gatcaaggac atggccgcgg gttttgtctc cattgccgca attgtttcat taattatcgc
     5761 ggtaatcata tacagtgaaa aactgacctt gctttaaata ggcagcacct tgtatactga
     5821 tggctatcct tgtatatttg tcattactca atcttaggca tgttttttaa acgacagcag
     5881 aaaaaaccga ctaaaacaaa ggctaaagcc caatcttgga ccttgtctcg tcagcaatca
     5941 gtcttattcg gcgggttttt aacctttttc ggagtggcct tgattatctc cttcgcctct
     6001 tatttcatca gctggcaaat ggatcaaagt ctggtcggga cctttgacaa aactaatccg
     6061 gccgataatt acttaagtca tctgggcaat acccttggac acttgtttat ctataatggc
     6121 tttggccttg cggcatttat tttggcgggc ctatttattg tttcagggct ctatttgttt
     6181 ttcaatttgg cgaccaaacc tttaaggaaa ttttggttct ggggcctgta tttaatgatc
     6241 tggctcagtt tgtgttttgg gtttttcgct gagcacaaac ccatgttagg cggtgtggtt
     6301 ggctttgaaa taagtgatgt ccttcagggc tatatggggg ctacgggttt agggctattt
     6361 ctgggcttta cggggctaat ttatttggtt ttaagactca agtggactcc ggactcccta
     6421 gtacaatgga ttaaaaacag accacgtaaa atcaaaggcg ctgtcgcaga agctaacgat
     6481 tcaattcaag agctctcccg gcaacatgaa gccccttctg aaggttttga cgagcagccg
     6541 caaacggtaa cttttgatca ggatgagcct gcggaaccgg ttgttttaga ggacaaccat
     6601 cgatcagaag gaccctcaga tgacgctgtg ccagaacaca atatcgcgga taaagaaccg
     6661 gagataaaaa agacgcccat ccagattatt tctggctcgg atgatggggt cgccctcgag
     6721 attgaaacga ccaaagaaga agtttctcta agtacgagtg aacagctcgt gcaagatttt
     6781 ggcaccttcg accctactct agagctgaaa aactttaaat ttccnnnnnn nnnnnnnnnn
     6841 nnnnnnnnnn nctttaaatt tccgtcaata gagctgctta aagattattc tggaggtaaa
     6901 ggcattacca tcgatgagca agaactcgaa gaatacaaaa gacgcatcat agataccttg
     6961 agtaattatt caattgggat tgccagtatc aaagccacca tcggtcccac agtgaccctt
     7021 tatgaaatcg tacccgaagc gggtgttcgc atttcaaaaa tcaaaaactt agaggacgat
     7081 atcgc
//
LOCUS       DPUP01000072            5903 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8420,
            whole genome shotgun sequence.
ACCESSION   DPUP01000072 DPUP01000000
VERSION     DPUP01000072.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5903)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5903)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5903
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(92..835)
                     /locus_tag="DHV98_02410"
     CDS             complement(92..835)
                     /locus_tag="DHV98_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017176403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05231.1"
                     /translation="MLRVENLTKYFDSHLVLDGINLEVNNQDILAVIGPSGSGKSTLI
                     RCMNMLELPSSGSIVFDGKQVINAFKSNENGIGTGELRRRVGMVFQHFNLYPHRTVLE
                     NVTQAPILVNKESVQDATTHAKELLESVGLVEKIHEFPNHLSGGQKQRVAIARALAMR
                     PNLLLLDEVTSALDPELVGEVLQVIKRLANQGMTMVIVTHEMAFAGDVANKVIFMEDG
                     QIKESGSPAEILVTPSSERLKLFLSRHLR"
     gene            complement(850..1512)
                     /locus_tag="DHV98_02415"
     CDS             complement(850..1512)
                     /locus_tag="DHV98_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009570048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCK05232.1"
                     /translation="MYQWDFYTVLQSFDLFLIGLWTTFLYTVGSISIGIVVGLAVCFA
                     RLAKLQSVRLLARSYQELFRCTPLLVQIMWAYYALPLLTGYSISNTTAGLLTLSLYVG
                     AFYSEIFRGGINAIERGQTEAGLATGLSRVQVMHHIILPQAIKKMLPAFINQSVIQVK
                     NTSLLYAISVAELTYMTSVVNSETYRPMEAFTLAAVMYFLMLFPLTQFADRFEKNLRQ
                     SD"
     gene            complement(1579..2409)
                     /locus_tag="DHV98_02420"
     CDS             complement(1579..2409)
                     /locus_tag="DHV98_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009570049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCK05233.1"
                     /translation="MRVINTLRALIFTLICAATATTAVAQTSKVDEIRSRGTLRMAGI
                     LNEDPYFSKDPRTGEWRGFAVEMARDIAENIGVKLEVVESSWANSILDVQSGKVDLAL
                     ALTALPKRALSVHFTSPTYYNSFVIISPKASMKDKTWAQLNDPSITIAVDLGSAQDQI
                     TKQMLPKAKILRFKTRDEAVIALTSGKADAVINTVLNGMVMTKKNAALGKVYVPHPLL
                     SSPSVIGLNYKTDDTWKQFVSAWADYNRRVGNNQTWILKGLEPFGIGLDDLPEGFSFN
                     "
     gene            2699..>3598
                     /locus_tag="DHV98_02425"
     CDS             2699..>3598
                     /locus_tag="DHV98_02425"
                     /inference="COORDINATES: protein motif:HMM:PF01266.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05234.1"
                     /translation="MQEFDLVVVGAGIVGASVAWHAAQRGVRVAVVDGIGPAAGASGA
                     SDGAVSVASKREGILADVAYESLEYSKELAKKNGPLAGIFHARPSFFVATDEAEEGAL
                     DALAIKLRKLGNQVKVVADLPNQKAVALGFGSGVRRLLKLDGEGHMLGYGATQAYLRA
                     SGAAFFWRDAVIDIAEEVSSVTVQCQSGKLRARAVVCAAGLQSLNLFESLPIFPRAGQ
                     LIITDQRQPNERTLEGSITAGSYLISKQLVKNETSSPPVVIDPLETGQYLIGSTREPH
                     GRSDFTDVSVIRNLIKQAVDIYPV"
     assembly_gap    3599..3652
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3653..3915
                     /locus_tag="DHV98_02430"
     CDS             <3653..3915
                     /locus_tag="DHV98_02430"
                     /inference="COORDINATES: protein motif:HMM:PF01266.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCK05235.1"
                     /translation="DIYPVLKNRRVIRTFTGVRAAVADGLPIVGLMPQHRRTWIASGF
                     EGDGICLSAWAGRAVCDAIFDKPKSVLDVFSPNRFQEMSEVV"
     gene            3915..4178
                     /locus_tag="DHV98_02435"
     CDS             3915..4178
                     /locus_tag="DHV98_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013653886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HCK05236.1"
                     /translation="MSRFFWNDEPVGFTENDTVATALLHHGVSNFAVSKDGRPNSIFC
                     GIGQCQSCLVRKENGESVEACLCSCIENERFYSSDSRGDAHEQ"
     gene            4168..5511
                     /locus_tag="DHV98_02440"
     CDS             4168..5511
                     /locus_tag="DHV98_02440"
                     /inference="COORDINATES: protein motif:HMM:PF07992.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05237.1"
                     /translation="MSSDGEHSFDVLVVGGGLAGMSAACKLAESGLRVHIVEQATTLG
                     GAVLRRAQTGQNPNLNGVHESSWRDLMARFDRVRKLMSVSVCSTYTGTDSTGAIVVTN
                     TSTSTSVSLRPKAIIVATGALEKVRPRMGWHLPGVMTAGALQVLLKTSLRAPKKRVLL
                     AGSGPLLLAVAAQLTRLGNPPLAVIEEARPSRKFWHALKLPVGYLLEAANYIKVLKVA
                     GVPIYEGRFIARIAHCTSGLRVSFTGDDKLCFDTDFLALHDGIAKNCYGMRPVGMPIW
                     HEAGDCALGLGARASRAHGEAVAIEVIKQLQVFPVESVEMKVRTKELLDVLSRERAAQ
                     STLAKIYSVDEQSALDELPHEVIICRCEKKSLSDLFDLGADPTNREIRLNGRFAMGAC
                     QGRFCAHWINMLRKKAGTAEGDRLIGSHWPIKPISMQALIHEADHLLSAEKKSSD"
BASE COUNT         1463 a         1294 c         1476 g         1616 t
ORIGIN      
        1 tgtttggagc aatgagatgt taatcttaaa agcgtccttg tcttccattg attaactttc
       61 gatgtgttaa ctgactttat cccgtaacag tttagcgaag gtgacggctg agaaacaatt
      121 tcaaccgttc ggatgacggg gtcacaagaa tttccgctgg cgaacctgac tcttttattt
      181 ggccatcttc catgaagatc accttgttcg ccacgtctcc tgcaaatgcc atctcatgcg
      241 taacgatcac catcgtcatg ccttggttgg cgagtcgctt gatcacttgt agcacctctc
      301 cgaccaattc agggtcgagc gcactcgtga cctcatctaa gagtaagaga tttggacgca
      361 ttgctagtgc gcgtgcgatc gccactcgtt gcttttgtcc accagataaa tggttaggga
      421 attcgtgaat tttctcaacc aacccgacgc tctctaggag ttcctttgcg tgtgttgttg
      481 catcctgtac agattctttg tttacgagga ttggggcctg tgtgacgttt tctagaactg
      541 tgcggtgcgg atacagattg aaatgttgaa aaaccattcc taccctgcgc cgcaattcgc
      601 cggtccctat cccgttctcg tttgacttaa acgcattgat cacttgcttg ccgtcaaaaa
      661 cgatggaacc ggatgaagga agctcaagca tgttcatgca gcggataagc gttgattttc
      721 ctgagccgga ggggccgatg actgcaagta tgtcttgatt gttaacctca agatttatgc
      781 cgtctaaaac caaatgagag tcgaaatatt ttgttaaatt ttcgacgcgg agaattgttg
      841 acatgttttt tagtcgcttt gccgcagatt tttttcaaag cgatcagcga attgcgttag
      901 gggaaagagc atcaaaaaat acataacagc agctagcgtg aaggcttcca taggtcggta
      961 agtttcgcta ttcacaactg acgtcatgta tgtcaattct gcgactgata tggcgtatag
     1021 cagggaggtg tttttgactt gtataactga ttggttgata aacgcaggca gcatcttttt
     1081 tattgcctgt ggcaggatta tgtgatgcat tacttgcaca cgtgaaaggc cagttgctaa
     1141 tccagcctct gtttggccgc gttcaattgc gttgatacca ccgcggaata tttcagaata
     1201 aaaggcgccc acgtaaagcg atagcgttag aagtcctgct gttgtatttg aaatcgagta
     1261 gcctgttagt aacggtaacg cgtagtatgc ccacataatt tggacgagca gcggcgtgca
     1321 ccgaaacaac tcttgatagc ttcttgctaa aagacgtact gattgaagtt tcgctagcct
     1381 cgcaaagcaa actgctaaac caacgactat cccaatactt atcgatccga ctgtatagag
     1441 aaacgtagtc cacagaccga ttagaaataa atcgaacgac tgcagcaccg tgtaaaaatc
     1501 ccactggtac atgctaactt cctgtcaaaa taaataagag gccacgcagc cctcgccacg
     1561 tgacctcttt gatatgcgtc agttgaagga gaagccttcg ggtaaatcat caagacctat
     1621 tccaaaaggc tcaaggcctt ttaaaatcca agtctgattg ttgccgacgc ggcggttgta
     1681 atctgcccac gctgaaacaa attgcttcca agtgtcatcg gtcttgtagt ttaggccaat
     1741 aacagaggga gatgaaagca aggggtgagg aacgtacacc ttacccagtg ccgcattttt
     1801 cttagtcatt accatgccat tcaaaaccgt gttgatgact gcatccgcct tgccagatgt
     1861 caacgcaata acagcctcat ctcgcgtttt aaatcgaagg atttttgctt ttggtagcat
     1921 ctgttttgta atctgatctt gggcagagcc taggtcaacc gcaattgtga ttgatggatc
     1981 attgagctga gcccaagtct tatctttcat actcgccttg ggggagatga ttacaaaact
     2041 gttgtagtag gttggcgagg tgaagtgaac tgaaagcgca cgcttgggta atgcagtcag
     2101 tgccaaagct aaatcgactt tcccggattg gacgtccaag attgaattcg cccagctcga
     2161 ttccaccacc tctagcttca cgccaatgtt ttcagcgatg tcgcgcgcca tctcgaccgc
     2221 gaacccacgc cactcacctg tccgagggtc tttggagaag taggggtcct cattcaagat
     2281 ccctgccata cgcagggttc ccctagaacg aatttcatca accttgctag tttgagccac
     2341 tgcggtggta gccgttgccg cacaaatcag tgtaaaaatt aacgccctta gtgtattgat
     2401 aactctcatg attactccag ttggctgcgt ctctcgaggc gcgttggtgt tttaaagatt
     2461 tagcccccac ccagcgggct atgaggagat tcactttaac gaacggaggt cttggtctca
     2521 atacaaataa gtcctttcat cctataaatt tatttgtatt tagattcggg taaacgctga
     2581 tatctcgcta tttctctcat tttgccttta aaaaattata ggtatgggag gctattttgt
     2641 aattgctgac cggtaatttt cgctaagatg aactcgacaa aaagagcaaa aaacgtcaat
     2701 gcaagaattt gatctggttg tggtgggggc gggaattgtt ggcgcctctg ttgcctggca
     2761 tgcagctcag agaggggtgc gtgtcgctgt agtggatggt atcggccctg ctgcaggcgc
     2821 gtctggggct agcgatggtg cagtatccgt cgcgagtaag cgggaaggta ttcttgctga
     2881 cgtggcctac gaatccctcg aatactcaaa agagcttgcg aaaaaaaatg gtcccctagc
     2941 cggtattttt catgcacggc cgagcttttt cgttgcgaca gatgaagcgg aggagggggc
     3001 tctggatgcg ttagctatca agttgcgaaa gcttgggaat caagtaaagg tggttgcaga
     3061 tcttccaaac caaaaggctg ttgccctcgg ttttggatca ggcgttcggc gactcctgaa
     3121 gttggacgga gaaggccata tgttgggata tggcgctaca caagcctatt tgcgtgcatc
     3181 aggagccgca tttttttggc gcgatgcagt catcgatatc gcggaggagg tttcgagtgt
     3241 cactgtgcaa tgccagtctg ggaaacttag agccagagca gtagtctgtg ctgctggtct
     3301 ccagtctttg aatctgtttg aaagtcttcc tatttttccc cgtgcaggcc aacttatcat
     3361 tacagatcag aggcaaccaa acgagcggac tttggaggga tcgataactg ccggttcgta
     3421 tttaatcagc aagcaattag tgaaaaatga aacttcgtcg cctcctgttg tcatcgatcc
     3481 attggaaaca ggacaatatt taataggtag tacccgagag ccacatggac gaagtgactt
     3541 tactgacgta tcagttattc gtaatttaat caagcaagcc gtggacattt accctgtann
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntggacatt
     3661 taccctgtac tcaaaaaccg ccgggttatt cgaaccttca ccggcgttag ggctgccgtc
     3721 gctgatggat tacccattgt tggactgatg ccgcagcatc gccgaacatg gatcgcaagt
     3781 ggatttgagg gggatggtat ttgtctctcg gcatgggctg gtagagctgt ttgtgatgcg
     3841 atattcgaca aacctaaaag cgtccttgat gttttttcac ctaatcgatt tcaagaaatg
     3901 agtgaggttg tttagtgtca cgattttttt ggaatgatga gccagttggg ttcactgaga
     3961 acgatactgt tgcaacagct cttttgcacc acggagtctc taattttgca gtctctaaag
     4021 atgggcgtcc aaattcaatt ttttgtggaa ttggccaatg ccaatcctgt ttagtgcgca
     4081 aagagaatgg cgaatcagta gaggcctgcc tctgcagctg catagaaaac gaaagatttt
     4141 attcaagcga tagccgtggc gacgctcatg agcagtgatg gcgagcattc cttcgatgtt
     4201 ttagtcgtag gaggcggatt ggccggcatg agtgccgctt gtaagctcgc tgaatcgggc
     4261 ttaagggttc acatagttga gcaagcgaca acgttaggtg gcgccgtcct gagacgagct
     4321 caaacgggac aaaaccccaa cctgaatgga gtccacgagt ctagttggcg ggatttgatg
     4381 gcgcgcttcg atcgtgtgcg taagctgatg agtgtttctg tttgttccac gtatacgggt
     4441 actgattcaa caggtgcgat tgttgtcacc aacacttcta cctcaactag cgtaagttta
     4501 agacccaaag cgattatcgt cgcgactggc gctctagaga aggttaggcc gcggatgggc
     4561 tggcatttac ctggggtaat gacagctggt gcgttgcagg tacttcttaa aacatctttg
     4621 cgagcgccga agaagcgtgt gttacttgct ggttctggcc cacttttgct ggcagtggct
     4681 gcacagctta ctcgcctcgg aaatcctccg ctcgcggtaa ttgaggaagc tcggccgtct
     4741 aggaagtttt ggcacgcatt aaaacttcca gtcggctact tattagaggc ggctaactac
     4801 atcaaggtgc tgaaggttgc tggcgttcca atttatgagg gacgatttat cgcgcgaatt
     4861 gcacattgca caagcggctt gcgagtaagt ttcacggggg acgataagct ctgtttcgac
     4921 actgattttt tagcgctcca tgacggtatt gctaaaaact gttacggcat gcgccctgtt
     4981 ggtatgccga tttggcatga agccggtgat tgcgctctcg gactgggggc cagagcttct
     5041 agagcgcatg gagaagcggt agcaattgaa gtaattaaac agttacaagt ctttccggtc
     5101 gaatcagtcg aaatgaaagt tcgtaccaaa gagctgctcg atgttttgtc tcgcgagagg
     5161 gctgcccaaa gcacacttgc gaaaatttac tccgttgatg agcagtctgc cttagatgaa
     5221 ctgccgcacg aggtaattat ttgcaggtgt gaaaaaaaat ctttatctga tttatttgac
     5281 ttgggcgctg accctaccaa tcgagagatt cgcctaaacg gtcgatttgc tatgggtgca
     5341 tgtcaaggtc gattttgtgc tcattggatc aatatgctac gcaagaaagc ggggacagcg
     5401 gagggcgata gattgatagg ttcccattgg ccaataaagc caatctcgat gcaggcgctg
     5461 atacacgaag ccgatcattt gttgtctgct gaaaagaaga gttcggatta gctgtcttga
     5521 tatcgcgcat gtttctggtt gaaagagcta catcctaacc ttgcgtggaa cggtgcatcc
     5581 tgcagcatgt tttgcactta gtgttcgcac gttgattcga cgtggtacct ctcagccaat
     5641 tgcctaccag tccaattgga gacatcgcaa tgcagttggt cgcgagaggt tggtaccaat
     5701 ctcgaattcc cagaaaaacc gtcatttttt gacagctatg gcaccttcaa ctcgcggaaa
     5761 aagcacaagc gtcaaaagta ttgacggttg atgtcctaat agttctaaaa taatttcgcg
     5821 cgctagttct ttataattac tgagtatgct actcctatac tacaaagcaa gtgtcacatg
     5881 atctaagcta ttgatttata tag
//
LOCUS       DPUP01000073            3325 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7020,
            whole genome shotgun sequence.
ACCESSION   DPUP01000073 DPUP01000000
VERSION     DPUP01000073.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3325)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3325)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3325
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>225
                     /locus_tag="DHV98_02445"
     CDS             <1..>225
                     /locus_tag="DHV98_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007137817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05238.1"
                     /translation="NELTDKAGIPRFGHTYLYDGGTGKRFDQPATVGVIYMLKLGHMV
                     DDKMHSRSIGPYSLITQQPLGGKAQFGGQR"
     assembly_gap    226..401
                     /estimated_length=176
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <402..722
                     /locus_tag="DHV98_02450"
     CDS             <402..722
                     /locus_tag="DHV98_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007137817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05239.1"
                     /translation="HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQ
                     AYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDI
                     RLEE"
     gene            805..>3325
                     /gene="rpoC"
                     /locus_tag="DHV98_02455"
     CDS             805..>3325
                     /gene="rpoC"
                     /locus_tag="DHV98_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCK05240.1"
                     /translation="MSRNKENTVQRFNKISIGLASPESILAESRGEVLKPETINYRTH
                     KPERDGLFCERIFGPVKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINL
                     VVPVAHIWYFRSLPNKIGYLLGLPSKKLDMIIYYERYVVIQPGIATNEEGEPVQKMDF
                     LTEEEYLNILDSLPQENLYLDDSDPNKFIAKMGAECLEELLNRIDLDTLSFELRHKAN
                     HETSKQRKTEALKRLQVVESFREASLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRF
                     ATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKT
                     DSNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELKLFECGLPKNMAAEL
                     YKPFVIRKLIERGIVKTVKSAKKIIDKKEPVVWDILENVLKGHPVLLNRAPTLHRLGI
                     QAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLGPEAILEAQLLMLASHNILN
                     PANGSPVAVPSQDMVLGLYYMTKLRKSTKDHKVTGEGLTFYSPEEVFIAYNEGKVDLN
                     AEIKVRTKDFNQDGVLVNQIITTTTGRVIFNDTVPEEAGYINEVLTKKSLRDIIGGIL
                     SVTSVPKTAAFLDQIKNLGFKFAFEGGLSFSLGDIIIPAEKQGMIDAANAQVDNIIMN
                     YNMGLITNNERYNQVIDIWTATNAELTELSMKRIREDQQGFNSVYMMLDSGARGSKEQ
                     IRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSILEYFISTHGARKGLADTAL
                     KTADAGYLTRRLVDVSQDVIINTEDCGTLRGIEVTPLKKNEE"
BASE COUNT          917 a          606 c          748 g          878 t
ORIGIN      
        1 taatgaattg accgataaag ctggaatccc gcgttttgga cacacttatc tttacgatgg
       61 tggaactgga aagcgctttg atcaaccagc gacagttggt gtgatttaca tgttgaaact
      121 cggtcacatg gtcgacgaca aaatgcactc gcgctctatt ggtccatact cactgatcac
      181 tcagcagcct ctaggaggta aagctcaatt tggtggtcag cgattnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncaccacttg gttgatgaca
      421 agatgcacgc acggtcgaca gggccatatt ctctggtgac gcagcaacca ctcggcggaa
      481 aggctcaatt tggtggtcag cgatttggag agatggaggt atgggcactt caggcttatg
      541 gcgcttcaag tacgctcaga gagattttga cagttaaatc ggatgacgtt attggtcgcg
      601 ctaaaactta tgaagctatt gttaaaggag aaaccatgcc tgaaccaggt ctgcctgaat
      661 cctttaatgt attgatgcac gaactcaaag gattgggtct ggacatcaga ttagaagaat
      721 agtttttagg gcttttgccc gagagcgtga cgaaattggt gtcgcggaca cacaactaac
      781 aaattaaaga ttattttaag caatatgtca agaaataaag aaaacacagt acagagattt
      841 aacaagattt ctattggttt ggcatcgcca gaatctattt tggcagagtc tcgtggagaa
      901 gtgttaaagc ctgagacaat caactaccgc acacacaaac cagagcgtga cggactgttt
      961 tgcgaacgta tttttggtcc tgtaaaggat tatgagtgcg cctgtggaaa gtacaagaga
     1021 attcgctaca agggtattgt atgtgatcga tgtggtgttg aggtaactga gaaaaaagta
     1081 cgccgtgacc gcgttggaca cattaacctt gtggttcctg tagcgcacat ttggtatttc
     1141 agatccttac cgaacaaaat cggatatctg cttggtcttc cctccaagaa attggatatg
     1201 atcatttatt atgaacgcta tgtcgtcata caaccgggta tcgcgacgaa tgaggaaggt
     1261 gagcccgttc aaaaaatgga tttcttgaca gaggaagagt atttgaatat tctggactcg
     1321 ttgcctcaag agaatttgta tttggatgac agtgacccga acaaatttat cgccaaaatg
     1381 ggtgctgaat gtttggaaga attattgaat cgcattgatc tagatacact gtcctttgaa
     1441 ttgagacata aggccaatca cgaaacttcg aaacaacgta agacagaagc attaaagcgt
     1501 cttcaggtcg ttgagtcctt ccgtgaggcg tcgttaaacc gtgaaaatcg tccagaatgg
     1561 atgattatga aggttgttcc tgtgatccca ccagaattac gtcctcttgt gcccttagat
     1621 ggtggacgtt tcgcaacttc cgacttgaac gatttgtatc gtcgtgtcat tatccgaaac
     1681 aatcgtctca agcgtttgat ggagatcaaa gcccctgaag tcattttgcg taacgaaaag
     1741 cggatgttac aggaatcagt tgactccctg tttgacaaca cgcgtaaagc atcagcggta
     1801 aaaacagaca gtaaccgtcc actcaaatcc ctttcggatt cattgaaagg taagcaaggg
     1861 cgttttcgtc aaaacttact tgggaagcgt gttgattatt cagcgcgttc ggtaattgtc
     1921 gtgggacctg aattgaaatt attcgaatgt ggtcttccaa aaaatatggc cgctgagctc
     1981 tataagcctt ttgtgattcg taaactcatc gagcgtggca ttgtaaaaac ggtaaagtcc
     2041 gctaagaaaa ttatcgataa gaaggagcca gtagtatggg atattctaga gaatgtgctt
     2101 aaaggacatc ctgtattatt gaaccgtgcc cccacattgc acagattagg aatccaagca
     2161 ttccagccta agttaatcga agggaaggca attcaattac acccactggt gtgtactgca
     2221 tttaacgccg atttcgatgg tgaccaaatg gcagtgcatt tgccgttggg tcctgaagcc
     2281 attttggaag cgcagctttt gatgttggct tctcataaca ttcttaaccc tgccaatggt
     2341 tcgccggtag cggttccttc tcaagacatg gtccttggtc tttattacat gaccaagtta
     2401 cgcaagtcta caaaagacca taaggttaca ggagaaggct tgacattcta ctcccccgag
     2461 gaggtcttta ttgcttacaa tgaaggtaaa gttgatttga atgctgaaat taaagtacgg
     2521 actaaagact ttaatcaaga tggtgttctt gtgaaccaaa ttataacgac cacaacggga
     2581 cgtgttattt ttaacgatac agttcctgaa gaggccggtt atatcaatga agttttgaca
     2641 aaaaaatctt tgcgtgacat tattggtggt attctatcgg taacctcagt gccaaagacc
     2701 gctgcctttt tggatcaaat caaaaacctc ggttttaagt ttgcctttga aggtggattg
     2761 tcctttagtt tgggtgatat tatcatccct gctgaaaaac agggtatgat tgatgcggct
     2821 aatgcacaag tcgacaacat tatcatgaac tataatatgg ggcttattac caataatgag
     2881 cgttataatc aggttattga tatttggact gcgactaacg ccgaattgac cgaattgtca
     2941 atgaagcgta ttcgcgaaga tcagcaagga tttaactcgg tatatatgat gttggattct
     3001 ggagcgcgtg gttcgaaaga acagattcgc cagttgactg gtatgcgcgg attgatggct
     3061 aagccaaaga aatcgaactc aggtggtggt gaaattattg agaaccccat tttatctaac
     3121 tttaaagaag gactctccat tttagagtac tttatctcaa cacacggtgc gcgaaaagga
     3181 cttgcggata cggcacttaa gacagcggat gcgggttatt taacccgtcg attggtggat
     3241 gtttctcaag atgtaattat caatactgaa gattgcggaa cccttcgtgg tatcgaggtt
     3301 actcctctaa agaagaatga ggaaa
//
LOCUS       DPUP01000074            3517 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_26850,
            whole genome shotgun sequence.
ACCESSION   DPUP01000074 DPUP01000000
VERSION     DPUP01000074.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3517)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..241)
                     /locus_tag="DHV98_02460"
     CDS             complement(<1..241)
                     /locus_tag="DHV98_02460"
                     /inference="COORDINATES: protein motif:HMM:PF07733.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05241.1"
                     /translation="MEYIPSFVRRKHGQEAITYDLPEMEVYLKETYGITVYQEQVMLL
                     SQKLAGFTKGEADVLRKAMGKKQKAVLDKMKPQFIK"
     assembly_gap    275..464
                     /estimated_length=190
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<465..>1135)
                     /locus_tag="DHV98_02465"
     CDS             complement(<465..>1135)
                     /locus_tag="DHV98_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCK05242.1"
                     /translation="QVAQIITYGTMGAKSSIRDTARVLDLPLHEADRIAKLIPNMTKL
                     KKIFATSEQEWRGTFRSDELPKISELVALAQSAALEGKTIQQARVLEGSLRNTGIHAC
                     GVIITPDDITNFVPIATAKDSELYVTQFDNAVVESAGLLKMDFLGLKTLTLIKDTVAL
                     VQEKYKIALVPDDFPIDDEKTYALFQNGETVGIFQYESPGMQKHLKDLKPTVFADLIA
                     MNALYR"
     assembly_gap    1136..1258
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1259..3387)
                     /locus_tag="DHV98_02470"
     CDS             complement(<1259..3387)
                     /locus_tag="DHV98_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCK05243.1"
                     /translation="MFIVFDTETTGLPKRFNAPVSDVDNWPRCVQIAWQLHSADGGLI
                     RHQDFLIKPEGYDIPFDSEKIHGISTELAKKDGALLQEVLDIFSKDLAEAQFVVGQNI
                     GFDINIIGCEYFRLGKKDVFESCKVLDTCTEVTAQLCQIPGGRGGRYKLPTLTELHGF
                     LFQSDFDQAHNATADVVATARCFFELIRRGYFKEELAPIAPKFFDDFLAVNKAVIAPI
                     QLKHRNLKKASKALREQAQELQPQVSGPDKPVDHALMEDWPFIHCHSHSQFSILQSTA
                     STQDLISAAVKDNMPGVALTDIGNMMGAFHFLQQVEQHNKSLTEDDPRKPLKGIVGCE
                     LNVCENHTNKNHKDNGYQIVFLAKNKIGYHNLSKLSSLAYTDGFYYVPRVDRQLIERY
                     KEGLIVLTGNLYGEVPSKILNVGTNQAEEALVWWKEQFAPDLYVEIMRHGQEDEDRVN
                     EVLIGLAQKHELKLVGTNNLFYINKEDANAHDILLCVKDGEKQSTPIGRGRGMRYGLP
                     NQEYYFKSATDMKALFKDLPQAIASTKEIFDKIESFTLFRDVLLPKFNIPEAFIDPLD
                     GQDGGKRGENSYLKFLTFQGAERRYSVISTEIQERLDFELSVIENTGYPGYFLIVQDF
                     ISEARKMGVSVGPGRGSAAGSAVAYCLGITNIDPIRYDLLFERFLNPDRISLPDIDID
                     FDDEGRSKVMDYVIQKYGANQVAQIIT"
BASE COUNT          908 a          753 c          642 g          901 t
ORIGIN      
        1 gcttgataaa ttggggcttc atcttgtcca ggacagcctt ctgtttcttc cccatggcct
       61 tgcgcaagac gtcggcctca cctttggtaa aacccgctaa tttttgagac aagagcatga
      121 cctgttcctg gtatacggta atcccataag tttccttcag gtacacttcc atctctggca
      181 agtcatacgt aatggcttct tgaccgtgtt ttcggcggac aaacgaagga atatattcca
      241 ttggccccgg gcgatacaag gcattcattg caatnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncgatac aaggcattca
      481 ttgcaattaa atcggcaaaa acagttggct tgagatcctt taagtgcttt tgcatcccag
      541 gagattcgta ctgaaaaatc cctacggttt ctccgttttg aaataacgca taggtcttct
      601 catcatcaat aggaaaatca tccggcacaa gggcgatctt gtacttttct tggactaaag
      661 cgacggtatc tttaatgagg gtcaatgtct taagccccaa aaagtccatt ttcaaaagtc
      721 cggcactctc tacaacagca ttatcaaatt gagtgacata aagttccgaa tccttagccg
      781 tagcaatggg cacaaaattc gtgatatcat ctggggtaat gatcacccca caggcgtgaa
      841 tccccgtatt gcgtaaagag ccttcaagaa ctcgagcctg ttgaatcgtt tttccttcca
      901 gtgcagcgct ctgtgccaaa gcaaccaact ctgaaatctt tggaagttca tcagaacgaa
      961 atgtcccgcg ccactcttgc tctgaggtag caaagatttt tttaagctta gtcatattgg
     1021 gaataagctt agcaatacga tcggcctcgt gcagcggcaa atccaatacc cgtgcggtat
     1081 cccttataga gctcttggcc cccatagtgc cgtaggtaat gatctgagcc acctgnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnta
     1261 ggtaatgatc tgagccacct ggttggcgcc atacttttga atcacataat ccatgacctt
     1321 tgaacgaccc tcgtcatcaa aatcaatatc aatatcggga agactaattc gatcaggatt
     1381 taaaaaacgc tcaaaaagta aatcgtatcg aatagggtca atgttggtaa tgcctaaaca
     1441 ataagccact gcacttccag cggcggatcc acgaccaggt ccaacagaaa cccccatttt
     1501 tcgcgcctca gaaataaaat cctgcacaat taaaaaataa ccgggataac cggtattctc
     1561 aatgacactt aactcaaaat ctaagcgctc ttgaatttct gtagagatta cagaatagcg
     1621 gcgctctgct ccctgaaagg tcaaaaattt taaataggaa ttctctccac gcttgccccc
     1681 atcttggcca tcaagaggat cgataaaagc ctctggaata ttgaacttgg ggagtaaaac
     1741 atcacgaaat agagtaaaag actcgatttt gtcaaagatt tccttagttg aggcaatggc
     1801 ctgtggtaaa tctttaaaca aggccttcat atctgtggca ctcttaaaat agtattcttg
     1861 attgggcaac ccataacgca tgccacgccc acgccctatg ggtgtagact gtttttcacc
     1921 gtcctttaca cagagtaaaa tatcgtgcgc attcgcgtct tccttattga tatagaacaa
     1981 attattggtc cctactaact tgagctcatg cttttgggct agtcctatca gcacctcatt
     2041 aacgcgatcc tcgtcttcct gaccatgacg catgatttcc acatataagt caggggcaaa
     2101 ttgctctttc caccacacga gggcttcctc cgcttgattg gtcccaacat tcaaaatctt
     2161 ggaggggact tcaccatata aatttcccgt aaggacgatt agtccttctt tgtagcgctc
     2221 aattaactga cggtctactc tcggaacgta ataaaatcca tccgtatagg ccaaagaaga
     2281 gagctttgaa aggttgtgat agcctatttt gttttttgct aaaaagacta tttgatagcc
     2341 gttatcttta tggttcttat tggtgtgatt ttcgcaaaca ttaagttcac accctacaat
     2401 tccctttaac ggtttacgcg gatcatcctc tgtcaatgat ttgttgtgct gttccacctg
     2461 ttgtaaaaaa tgaaacgccc ccatcatatt ccctatatct gttagggcca caccgggcat
     2521 attatctttc acggcggcac taattaaatc ttgggtggat gcggtagact gtaaaataga
     2581 aaattgagag tgcgaatgac aatggataaa gggccaatct tccatgagcg catggtccac
     2641 tggcttatcg ggcccgctaa cttggggctg gagttcttga gcctgttcac gtaaggcttt
     2701 tgaggctttt tttaaattac gatgttttaa ctggattggc gcgataaccg ctttgttcac
     2761 tgctaaaaaa tcatcaaaga atttaggggc aatcggagcg agttcctctt taaagtaccc
     2821 tcttctgatc aattcaaaaa agcaacgcgc ggtggcgaca acatctgcag tcgcattatg
     2881 cgcctgatca aaatcacttt gaaacaaaaa cccatgaagc tctgtaagtg tgggtaactt
     2941 ataacggccg ccacgaccac ccggaatttg acagagttgg gccgttacct cagtacaggt
     3001 atccaatacc ttacaggatt caaaaacatc ttttttgcca aggcggaaat actcacaacc
     3061 gataatgttg atatcaaaac ctatattttg tccaacgaca aattgcgcct ctgcgagatc
     3121 cttgctaaaa atatcaagaa cctcctgcag cagggcccca tctttttttg cgagctctgt
     3181 agagatcccg tgaattttct cgctatcaaa aggaatgtca tatccttctg gtttgattaa
     3241 aaagtcttga tgccgaatta gccctccgtc tgcactgtgc aattgccagg caatttgcac
     3301 gcatcgtggc caattgtcaa catcactaac cggagcatta aatcgcttag gtaagcctgt
     3361 ggtttcggta tcaaatacaa taaacatgag cctggcggta gtagggtaaa ctaaggctct
     3421 aaattacgga ttcaaatctc cttatcctga taaagtttta aacattggag cgcaattttc
     3481 cacaaaaaaa atccgaacac taggttcgga tttttcc
//
LOCUS       DPUP01000075           12573 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5946,
            whole genome shotgun sequence.
ACCESSION   DPUP01000075 DPUP01000000
VERSION     DPUP01000075.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12573)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12573)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12573
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..377)
                     /locus_tag="DHV98_02475"
     CDS             complement(<1..377)
                     /locus_tag="DHV98_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002991161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HCK05244.1"
                     /translation="MSQKVLLNATEIQIALHRLACQLIENHINFEHTVLVGLQPRGVY
                     LAERIKALLVDEYGIKDVPLGYLDITFFRDDFRRSEKPLEANRTQIDFIVEGKKVVFI
                     DDVLFTGRSIRSALTAIQSFGRP"
     assembly_gap    427..559
                     /estimated_length=133
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(734..>1464)
                     /locus_tag="DHV98_02480"
     CDS             complement(734..>1464)
                     /locus_tag="DHV98_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HCK05245.1"
                     /translation="HVGDKVEAVVLTLDRAERKMSLGIKQLTPDPWTDITKKYPVGST
                     HKGIVRNFTNFGVFVELEEGVDGLIYISDLSWTKKVKHPSEFTSIGEKLAVVVLELDV
                     DGRKLSLGHKQTMDNPWDKYEADFGVGTKHTTKIDEMVDKGAVINFNDDITAFVPKRH
                     LEKEDGTMLKAGEEAEFVIIEFNKDFKKVVASHMSIHKEEEAKIVKKAAKAAAQQAEE
                     SKPTFSDANAKLQEIKDKMEGKGQ"
     assembly_gap    1465..1601
                     /estimated_length=137
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1602..2668)
                     /locus_tag="DHV98_02485"
                     /pseudo
     CDS             complement(1602..2668)
                     /locus_tag="DHV98_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749742.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
     assembly_gap    2340..2399
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2929..3634)
                     /locus_tag="DHV98_02490"
                     /pseudo
     CDS             complement(2929..3634)
                     /locus_tag="DHV98_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783333.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
     assembly_gap    3252..3279
                     /estimated_length=28
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3634..4650)
                     /locus_tag="DHV98_02495"
     CDS             complement(3634..4650)
                     /locus_tag="DHV98_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HCK05246.1"
                     /translation="MRLWLLTIIILCTQFSRAQVGGSATYQFLNLGTSPRQVALGGKT
                     VTNFDYDPTQGLFNPATINPAMDNQLSINFNNYVSDISYGTASYAYLWDRRTQVIHTG
                     VTYINYGSFAGYDAQGQPTNSFSGGELAVSVGHAKNIPYTNWYLGGNLKFISSTLEQY
                     NSSGIALDIGLLYRNEAQGLNFGLVARNFGAQLDPYDITAEKLPFELVAGVSQDLENI
                     PVRWHVTMEHMQNWRLAFANPNRDEIDLEGNATSENINFIDEILRHAILGVELFPDKG
                     FNLRLGYSFRRGEELRIIDQRSFAGLSAGFGIKLNKLRFSYAYSRFNSAAASSFFGLN
                     MNLQ"
     gene            complement(4733..>4941)
                     /locus_tag="DHV98_02500"
     CDS             complement(4733..>4941)
                     /locus_tag="DHV98_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HCK05247.1"
                     /translation="GGIKEKILAAKRAKINEIILCADNKKDILEIPDHYLKGLKFHYV
                     TDMLEVVSIAVTNQRVKSPKKLWD"
     assembly_gap    4942..5099
                     /estimated_length=158
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(5100..7365)
                     /gene="lon"
                     /locus_tag="DHV98_02505"
                     /pseudo
     CDS             complement(5100..7365)
                     /gene="lon"
                     /locus_tag="DHV98_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007651628.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
     assembly_gap    5966..5994
                     /estimated_length=29
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(7630..9045)
                     /locus_tag="DHV98_02510"
     CDS             complement(7630..9045)
                     /locus_tag="DHV98_02510"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05248.1"
                     /translation="MKRYLVRGFLLTVFSLFLFSACEDEPLTGNFVTDEQVNDTSVFS
                     ASINGEGFSASTTTGQLINGVLLMTGTDYFGNIISIVITNIGTCTFDLTQEINPTSFI
                     LEAPTEAPFEVLSSLGGAGTAVIQTYDQENQTVSGIFSFTAIREISDGAGGTITESVV
                     VTNGVFTDIPFTLVDGSLEPYDCDNGGVDPGDDPGDSGIVDPDSSFFALVDGEEFIDE
                     TFVAEILMVGSDEVVKLTATAPTLERMEFFIPMGLSVGTYEFDPIFNGSNLTVAYTDS
                     QGTEALTSMSGSVTFEEYGNITGKLSATFAFTATDPIGINEGEVLVTEGAFVMDYRPD
                     ATLADNTLSAEVDGGSFVATSVEILLDPSYDTTYVQLTALDADSNRSIALSFPIDVMP
                     GTYNMATSIETGVEIVGLYNPDIENAQLYYSSPGQLTITSYQYSDGVIEGQFSFTALD
                     PNGFYLEEYSIDMGVFTLTIP"
     gene            complement(9099..10430)
                     /locus_tag="DHV98_02515"
     CDS             complement(9099..10430)
                     /locus_tag="DHV98_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK05249.1"
                     /translation="MKQSELIDYRGNKRYINAWAFYDWANSAYSLVISSAIFPIFYSA
                     LFSSAGVEYVAVFGGVIRSTPLISYLTAAAFIVVAISAPLLSGISDFVGNKKVFLKFY
                     CYLGAFSCMGLYFFDLEYIYFGLLCYFFGLIGFWGSIVFYNSYLPDIAHPEQQDAVSA
                     KGFSLGYIGSVLLLIVNLAMVMNPGFFGFEDSGAGKMEAMRWSFVMVGLWWMGFSQYT
                     FYVLPKGAGKPHKVTRAVVFNGYAELKSVYNALSDNLRLKRYLMAFFVYSMAVQTIML
                     VATYFGEQEIAWPDEGAKTTGLIVSILIIQILAMLGAQMTSKASKKYGNIKTLIAINS
                     VWAAMSIYAYFMISPVQFYVAAGIVGLVMGGIQALSRSTYSKYLPRTEDTASYFSFYD
                     VAEKIGIVIGMLLYGFIDQITGSMRNSVLFLIVFFISGIVLLLRVPDKIKS"
     gene            10565..11050
                     /locus_tag="DHV98_02520"
     CDS             10565..11050
                     /locus_tag="DHV98_02520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05250.1"
                     /translation="MKRLSLLLFGFGFLLMSCEGPEGPPGFPGVNILGKVIEVNLDLN
                     QGNGYQQVVTLPLDIEVFESDAILVYRHEGIFDSADIWTPLPTTYFDTGGGTFLYTFN
                     HTYFDVKFFLDGNFNLNTLGAEWTQNQLFRIAIVPAEYGDALWSMQDIEHSGNFEFLG
                     N"
     gene            11053..11553
                     /gene="msrB"
                     /locus_tag="DHV98_02525"
     CDS             11053..11553
                     /gene="msrB"
                     /locus_tag="DHV98_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HCK05251.1"
                     /translation="MRNLSISLVIITLFMGSCASKAQKKEEVFPIEKPDSIWQKELGP
                     MAYRVLRQAATEPPNSSKLNKEYRSGTFYCGGCGAPLFESTAKFESGSGWPSFDRPID
                     KAIAYSTDYDLGYARTEEHCAKCGGHLGHVFPDGPRETTGMRHCINGAALKFLPNDTK
                     TKSRQE"
     gene            11619..12017
                     /gene="msrB"
                     /locus_tag="DHV98_02530"
     CDS             11619..12017
                     /gene="msrB"
                     /locus_tag="DHV98_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HCK05252.1"
                     /translation="MKKTEQEWLEELGPERYHILRQKGTERPFTGTLNNEYRPGVYKC
                     GGCGTPLFDSNAKFDSGCGWPSFDRSVPESVAYERDTSHSMYRTEILCQNCGGHLGHV
                     FPDGPTKTGQRYCVNSLSITFDEKSEENPV"
     assembly_gap    12164..12343
                     /estimated_length=180
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <12344..>12573
                     /locus_tag="DHV98_02535"
     CDS             <12344..>12573
                     /locus_tag="DHV98_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HCK05253.1"
                     /translation="TVIEKENLGGVCLNWGCIPTKALLKSAQVFDYIKHADDYGITVS
                     DFDKDFSKVVQRSRSVADGMSKGVQFLMKKNK"
BASE COUNT         3440 a         2698 c         2218 g         3492 t
ORIGIN      
        1 tctgggcgac caaaactttg aattgcggta agggctgatc gaatacttcg tcccgtaaac
       61 aagacatcat cgataaatac cactttttta ccctctacaa taaaatcaat ctgtgtccta
      121 ttggcttcca aaggcttttc agagcggcga aagtcatctc taaaaaaagt gatgtccaaa
      181 tagcccaagg gcacgtcttt tattccatac tcatcaacaa gtaacgcctt aatgcgttct
      241 gctaagtaca cgcctctggg ctgtaaccca acgagcacag tatgttcaaa attaatatga
      301 ttttcaatga gttgacaggc caaacgatgt agtgcgatct ggatttccgt agcgtttaat
      361 agcacttttt ggctcatatg ataagatctg aatcggattc aggggccaaa tttaagcgtt
      421 tagatcnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnng gcctataatc cgatataatc tcaaattgcc gtttgagact
      601 caggggaatt agatccccat taaactgaat aattatccgc tgatttagcc cttgaattgg
      661 gataatggca acaataaaaa aacccggtag cgcagctacc gggttttgta ttaagtacag
      721 atgacttaga tcattactga cctttacctt ccattttatc cttaatttct tgaagcttag
      781 cattggcatc actgaaagtt ggctttgatt cttccgcttg ctgggcagca gctttagccg
      841 cttttttgac aatcttagcc tcttcttctt tgtgaatcga catatgagaa gcaacgacct
      901 tcttgaagtc cttattgaac tcaataatga caaattctgc ttcttctcct gcttttagca
      961 tagtgccgtc ttctttctcc aaatgacgct taggaacaaa tgctgtaatg tcatcattaa
     1021 agttaatcac cgcacctttg tctaccattt cgtcgatttt ggtggtgtgt ttagttccta
     1081 caccaaagtc agcctcatac ttatcccatg ggttatccat agtttgtttg tgacctagac
     1141 ttaatttgcg accatcgaca tccaattcaa gaacgacaac cgcgagtttt tcaccgattg
     1201 aagtaaattc acttggatgc tttactttct tagtccaaga aagatcactg atgtatatca
     1261 atccatcaac accttcttca agctctacaa atacaccaaa gttggtgaag ttgcgcacaa
     1321 ttcctttgtg cgtagaacct acagggtact ttttggtaat atccgtccat ggatctggag
     1381 tcaattgctt aatccctaaa gacattttgc gctctgcgcg gtcaagagtt aagacaacag
     1441 cttctacctt atcacccacg tgaannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntcagcgatt acaacaactt
     1621 ttcctttaac atggtcccct acttttagtt catcaccaag agcttcccat gggtgcgcgc
     1681 ttaactgctt catgcccaat tggattcttg ttttatcttc atcaaagtcc aagataacca
     1741 cgttgagttt ttgatcaagc tccacgactt cacttgggtg gttgatacgc gaccatgata
     1801 ggtctgtaat gtgcaccaat ccatcaacac caccaagatc aacaaatacg ccatatgagg
     1861 taacgttttt aaccacaccc tctaggactt gacctttttc tagttgacct atgatttctt
     1921 tcttttgttc ttcgatatct gcttcgataa gcgctttatg agaaacaact acgtttttga
     1981 actcatggtt gattttaacc actttgaatt ccatagtctt accaacataa atatcgtaat
     2041 cacgaattgg cttcacatca atttgtgatc ctggcaagaa tgcctcaata ccaaatacgt
     2101 ctacaatcat acctcctttg gtacgacact taacaaatcc attgaccact aaaccatcgt
     2161 catgggcagc gttaacgcga tcccatgctt tgattgtacg tgctttacgg tgtgataaaa
     2221 cgagttgacc tgtagcgtct tcacgcacat caatcaaaac ttctaccttg tcaccaactt
     2281 tgagatttgg gttgtaacgg aattcgttaa gtgaaattac gccttcactt tttgcattgn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna
     2401 tatcgatgat tgcatctcta tctgttaagt gtatcacaaa cccttctact acctcgtcat
     2461 tcaaggtgcc aacaaagttt tgtgctacga gtttttcaaa ctcttctaac tgaccttcat
     2521 ctacaggatc aattccttct tcgtagttgt gccagttaaa gtcttttaaa aattgttcag
     2581 gattctgaac ttgagtatcc gccttagggg cttttactgc agctgtttct tgagtttcaa
     2641 cagcttcgtt gtttgcttgt tcagccattt gttaaatctg gaattccaat aaaaatggaa
     2701 ttgccatttg tattctgtca ctcacccaaa ggctatcgct gtaagtgcac agaaggatta
     2761 aatatatctc ttggcccttt tttcctttgg ttcgcgtcaa aaaggatcgc aaaaatagaa
     2821 tattcccacg gaatatcaaa acattaaaaa tcagattatt gaatcattga tttcaaccca
     2881 ccttaaaggc cgatttacct ggattcgcgg ggactcgcct gcccaaaatt aaacacggcc
     2941 gaaaatccgg tctttggcca attgtagtat catattgaat tggtcatgag gattcatctc
     3001 gctattatcg atgacaatag ctccttccgg gattattaat ggagatacac ttcgttttga
     3061 gtccatctca tctcttgatt gaaggttgtc caatacggct tcaaaagaca cctgctgacc
     3121 cgacgccaat aactccgaat gccttctttg tgctctaaca gctgcagatg ccgtcataaa
     3181 aatctttagc tccgcagagg gaaaaactat tgagccaata tctcgaccat ccatcacaac
     3241 accacctttg gnnnnnnnnn nnnnnnnnnn nnnnnnnnng ctgcaagtct accattttag
     3301 cgcgaacctc cgggagcgtt gctatttggc taacagattc agaaatctcc atacgtctaa
     3361 tgtgctctga aacatctttt ccgttcagga tcgtcttttt caacccatgc tcccagacaa
     3421 aatcaatttc aatttctggc aaagcttcga gcaaggcccc tttatccaga gactttcctt
     3481 tcaggagttc attgtctttt gcataaagcg tcactgagcg atacatcgct ccactatcga
     3541 tataaatata gcccaactcc gcagccaatt gtttggcgac agtactttta ccggtggacg
     3601 aatgtccgtc tatggtgata atgatgcgcc gcattattga agattcatgt ttaatccaaa
     3661 aaagcttgac gctgcagcac tattaaatcg actgtaggcg tagctgaagc gcaatttatt
     3721 caatttaata ccaaatccgg cactcaatcc agcaaaggag cgctggtcta taattcttaa
     3781 ctcctcacct cttctaaaac tgtaccccaa acgcaagtta aaccccttgt ccggaaacag
     3841 ttctacgccc aggatggcat gccgcagtat ttcgtctata aaatttatat tttcacttgt
     3901 ggcattgccc tcgagatcaa tttcatccct attggggttt gcaaaggcca aacgccaatt
     3961 ttgcatgtgt tccatcgtca catgccaacg cacaggaatg ttttctaagt cctgagagac
     4021 gccggcaacc aactcaaaag ggagcttttc ggccgttata tcataaggat cgagctgtgc
     4081 cccaaaattg cgggcgacca atccaaaatt aagcccttga gcttcatttc gatataacag
     4141 accaatatca agcgcaattc cagaggaatt gtactgctcc agggtcgaag aaataaattt
     4201 caaatttcct cctaaatacc aattcgtgta cggtatgttt ttagcatggc ccacggatac
     4261 ggctagctcg ccccccgaaa aagaattcgt gggttgccct tgagcatcgt agcccgcgaa
     4321 actgccgtaa ttaatatacg ttactcccgt atggattacc tgagtacgtc tatcccatag
     4381 ataagcataa ctcgctgtcc cataagagat atccgaaacg taattgttaa aattaatgga
     4441 caattgattg tccatggcgg gatttatcgt ggcgggattg aacaagcctt gggtcggatc
     4501 ataatcgaaa ttggttaccg tctttcctcc taacgctacc tgacggggac tagtacccaa
     4561 attcaaaaat tggtatgttg cagaaccacc gacttgtgcc cgactgaatt gggtgcacaa
     4621 aataattatc gtcagtagcc acaatctcat aatccttttg gtatcaatcc ctggtttgat
     4681 taacgactac aatgatactt tattttcaag ccaaataaaa gtacgtcttg aattagtccc
     4741 aaagcttctt tggacttttt accctctgat tggtcacggc aattgaaacc acctctaaca
     4801 tatccgttac atagtgaaat ttcaggcctt tgagataatg atcgggaatc tctagaatgt
     4861 cctttttatt atccgcacaa agaataatct cgtttatttt agcgcgcttg gcagccaata
     4921 ttttttcttt gataccgcct annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc
     5101 gcctacaggt aaaaccttac ctcttaaggt aatttctcct gtcatggcaa gacttctttt
     5161 aactttgcgc tgagtaaaaa gcgaaactaa agaagtcagc atggtcactc ctgcacttgg
     5221 accatctttt ggcgttgctc cttcgggaac atgaatgtga atattatgtg ttttaaacac
     5281 ctcaggacgc acccctagaa gctcagcatg agattttata aattccaggg ctatggtggc
     5341 cgattctttc atcactgttc ccagatttcc ggtcatcgtg agttggcctt ttccttcaga
     5401 aatagcggat tcaataaata gaatatctcc gcctacacgg gtccatgcca atccagtaac
     5461 cacaccagcg acatcattat tctcgtactt atctctctcg agtctaggtg ccccaaggac
     5521 ctcttcgatt gttttttgat ctacggtaac cgtataaggc tgatccatag cgatattcat
     5581 ggccgcataa cggaccattt tagcgatttt cttttctaat cctcgcaccc cgctctcacg
     5641 cgtataaccc tctacaataa aggctaactg gcgtttatgg atttttaagt gatccttatc
     5701 caatccatgc tcttttagtt gtttgggcaa caaatgtcta tgggcgattt caattttttc
     5761 ttctatcgtg tatccagaaa cctcaataat ctccatccga tcaagaagcg ccggttgaat
     5821 attgctcaaa ctattggaag tcgccacaaa cattacctta gaaaggtcgt accccagctc
     5881 aagataattg tcgtaaaaag cattgttctg ttctggatcc aggacctcga gcatcgccga
     5941 tgagggatcc ccttgatggc tggccnnnnn nnnnnnnnnn nnnnnnnnnn nnnnatccaa
     6001 aacaaatact gggttggctt tacccgcttt tttgatattc tgtaaaattc ttcctggcat
     6061 tgccccgata taggtcttgc ggtgtcctct tatttctgcc tcatcgcgca gcccacccag
     6121 agacatacgc acatactgtc tgcctaaagc ctcagcaata gatttaccta aagaggtttt
     6181 tccaacccct ggagggccgt aaagacacaa aatcggagat ttcatatcct gacgtaattt
     6241 taaaacagcc aaatactcaa tgattcgttt tttaacatca tccaatccaa agtggtcacg
     6301 attgagtatt ttctgagcgc gctttaaatc gaaaacatcc ttgctaaatt cagaccaagg
     6361 caattcaagg attaagtcta aataattacg ctgtatactg aattcagcga cttgaggatt
     6421 catgcgctgc atcttactga gttccttttc aaaatgctga gccacctctt tagaccactt
     6481 tttctttttt ccagcgaggc gcatctcctc tatctcggct tcataagagg tccctccaag
     6541 ttcttcttga atggtcttca tctgttgctg caagaaatac tcgcgctgtt gctgagacat
     6601 atcgctttcg actttggatt gaatatccat ttttagcgat aatttctgca attcaacgtt
     6661 caaaaattta agcgtctgta aggcgcgttc attaagatta tttatttcta ataaactttg
     6721 tttttcaggg acagtgatgt tcagattaga actaacaaaa ttgattagaa aggacgagct
     6781 ttcaatgttt ttaatggcaa aagcagcgtc agaaggtatg tttgggctat ctttaataat
     6841 gtcaatcgcc agttctttta tagaatcgat tatcgcatta aactctttgt cctccttttc
     6901 cgggcgctgc tcttcaacct ccttaatggt tgccgttaaa aaaggatcgg tggtcacgac
     6961 ttgatcgatt tcaaatcgtt tcttgccctg aataatcacc gttacatttc cgtcaggcat
     7021 ttttagcacc cttaaaatac gcgctaccgt accgacttga taaatatcct ttgactctgg
     7081 gttttcttga gcttcttcgc gttgcgccac caccccaata accttattgc cttgattggt
     7141 ttggttaatg aggttaatcg atttgtcgcg gcccgcagta atcgggataa ccaccccagg
     7201 aaacaacacg gtattcttca gaggcaatat gggtaaggtc tcaggtaaat cttcagagga
     7261 catcgcttgt tcatcttctg cactaagcag tggaataaac tccgcgtcct cgttcaaatc
     7321 atgaaatgac aaactgtcta aattaataag tttggctttt gacataagta tatctcggtc
     7381 attatgtcac gcctaacaaa ggcatgaact tgatcacatt ctattttttt atacaaaatc
     7441 aatcgattac cccaattaat ggagcgcatc aagatttctt caccctgtaa tgttcaatag
     7501 ttatgccata gccccagtcc acacaaaaaa aatacctgga tatccaggta ttttaaaaat
     7561 ttatacaaac gttctgagca aaaaagccac attcacacac tgggcaaaca atacgtttaa
     7621 atcgaccaat tagggaatgg tcaaggtaaa gacccccatg tcaatagaat actcttctaa
     7681 ataaaaacca ttgggatcta gggcagtaaa actaaactga ccttcaatca caccatcaga
     7741 gtactgataa ctcgtaatgg ttaactggcc cggagaggaa taatacaatt gtgcattctc
     7801 tatatctgga ttgtaaagtc ctactatctc aacacccgtt tcaattgagg ttgccatatt
     7861 gtaggtccct ggcattacat caataggaaa gctcaaggca atggatctat ttgaatctgc
     7921 gtcaagggcc gtgagttgaa cataagtggt gtcgtaactc ggatcaagta atatttctac
     7981 tgaagtcgcg acaaaacttc caccatcaac ctctgcgctt aaagtgttgt cagctaatgt
     8041 agcatcaggg cgataatcca ttacaaacgc tccttcggta acaagaactt ctccttcatt
     8101 aatccctatt ggatcggtcg cagtgaaggc aaatgttgcc gataattttc cagtaatatt
     8161 tccgtattct tcaaaagtta cagagccaga cattgaagtc aaggcttccg ttccttgact
     8221 atctgtgtag gcgaccgtga gatttgatcc gttaaaaata ggatcaaatt cgtaagtccc
     8281 aacgctcagt cccataggaa taaagaactc catacgctct aaagtcggag ccgtcgccgt
     8341 taattttacc acttcatcac tccctaccat caaaatttct gcgacaaatg tctcatcaat
     8401 aaattcctca ccatcgacta gggcaaagaa actgctgtct ggatccacaa ttcctgaatc
     8461 gcctgggtca tctcctggat ccacgccacc attatcacaa tcgtagggct ctaatgaccc
     8521 gtctactagg gtaaatggga tatcggtaaa cacaccattg gtcaccacta cggactcagt
     8581 gattgtccct ccagcaccat cacttatctc acgaattgcg gtaaaagaaa aaattccgct
     8641 gacggtttgg ttctcttgat cataggtttg tatcactgct gtccctgccc cccctagact
     8701 actcaagacc tcaaatggag cctccgttgg cgcctccaaa ataaaacttg ttggattaat
     8761 ttcttgggtc aaatcaaagg tacatgtccc tatatttgtg attacgatgg aaataatatt
     8821 gccaaaataa tccgtaccgg tcatcaataa aacgccattg attaattgcc cggttgttgt
     8881 tgacgcagag aaaccttccc cgtttattga agcagaaaac acactggtat cattgacttg
     8941 ttcatcagtt acaaaattac cagttaacgg ttcgtcttcg catgctgaaa acaaaaacag
     9001 actgaaaacg gtcagtagaa aaccgcgaac caaatatctc ttcatagggc aagattagct
     9061 ttaggtatgt aacgcaaact taagtaaaaa ttgtgtaatc aagacttaat tttatcggga
     9121 acccttaaca gtaaaacgat accggaaatg aaaaatacga ttaaaaacaa tactgaattt
     9181 ctcatacttc ctgttatttg atcgataaaa ccataaagca gcatcccgat aacaatccca
     9241 atcttttctg ccacgtcata aaaactaaaa taagaggcgg tgtcctctgt gcgtggtaaa
     9301 tatttagaat aggtagaacg actcagagct tgtattcccc ccataacgag accaacgatt
     9361 ccagccgcaa cataaaattg aaccggacta atcatgaaat aggcataaat actcatcgcc
     9421 gcccaaacgc tattaatcgc gataagggtt ttgatattgc cgtatttttt tgatgctttt
     9481 gacgtcattt gagcgccaag catggccaat atttgaataa ttaaaatact gacaatcaat
     9541 cctgtggtct tagcgccctc gtccggccag gcaatttcct gttcgccaaa atatgtcgcg
     9601 acaagcatta tggtttgcac ggccatacta tacacaaaaa acgccatgag atagcgcttg
     9661 agacgcaaat tatcagacaa tgcgttgtaa accgatttta gctcggcata accattaaat
     9721 accactgccc ttgttacttt atgcggttta cctgcccctt tgggcaatac gtaaaatgta
     9781 tattgactga atcccatcca ccacagacca accatcacaa aggaccagcg catcgcttcc
     9841 attttgcctg cccctgagtc ctcaaatcca aaaaaccctg ggttcatgac catagccaaa
     9901 ttgacaatca acaaaagaac actccctata taccctagcg aaaatccttt tgcactaacc
     9961 gcatcttgtt gctcaggatg ggcgatatca ggcaagtagg aattgtaaaa aacaatactg
    10021 ccccaaaatc cgattaaacc aaaaaagtaa cacaacagac caaagtagat atactctaag
    10081 tcaaagaaat agagccccat acaagaaaaa gcacccaaat agcagtaaaa ttttaaaaag
    10141 actttcttat tcccaacaaa atcggatatt cctgacaata atggagcact aatcgccaca
    10201 acaataaaag ccgcagccgt gaggtaactg atcagcggag ttgatctgat gacaccacca
    10261 aaaacggcga cgtattcgac cccggcacta gaaaaaagtg cactgtaaaa aatagggaaa
    10321 attgcagagg agatgaccaa actataggcc gagttggccc aatcataaaa agcccaggca
    10381 ttgatatatc gcttgtttcc tctgtaatcg attaattctg actgcttcat tttggataga
    10441 gttctccctt aggttcgtgg ttaggcttgg tccaagttaa ccaattattt aaaaggtatc
    10501 gaagagaaaa aagcttttga ctaattttgg cctaactttt gcacctgaat tgaaaacaca
    10561 tcttatgaaa cgactgtctt tattgctttt tggttttggt tttttgctca tgtcttgtga
    10621 gggtcctgaa ggtcctcctg gctttcctgg agtcaatata ttgggtaaag taatcgaagt
    10681 taatctcgat ctgaaccaag gtaatggcta tcaacaggtg gtgaccttgc ctctagatat
    10741 tgaggttttt gaaagcgacg ctattttggt ttatcgtcat gaaggaattt ttgattcggc
    10801 cgatatttgg acccccctac cgacaacgta ttttgacact ggcggaggaa cctttttata
    10861 cacgtttaac cacacctatt ttgacgttaa gtttttccta gacggaaact ttaatttaaa
    10921 tacccttggt gctgagtgga cacaaaatca actttttcgt atcgcaatag ttcccgctga
    10981 atacggcgat gccttatgga gcatgcagga cattgaacac tcaggtaatt ttgaatttct
    11041 aggtaattaa ttatgcgcaa tctttctatt tctttggtca ttatcacctt gttcatgggt
    11101 tcttgtgctt caaaagctca aaaaaaagag gaagtatttc ccatagaaaa accggattcg
    11161 atttggcaaa aagagttagg tcctatggcc tacagagtat tacgacaagc cgccactgaa
    11221 ccacccaaca gcagtaaact caacaaagaa tatcgctctg ggacctttta ttgtggtgga
    11281 tgcggggcgc cactatttga gtcaacggca aagtttgaga gtggttctgg ttggccctcc
    11341 tttgatcgcc ctatcgacaa agcaatcgct tacagcactg attatgattt aggctatgcc
    11401 cgcactgagg aacactgcgc taaatgcggt ggtcacttag gtcatgtttt cccggatggg
    11461 ccaagagaaa ctacaggaat gcgtcattgt attaacggag cagcacttaa gtttctccct
    11521 aatgacacaa agacaaagtc tcgtcaggag tagcgccttg ataaaattct aatattaaaa
    11581 acccacagag aacccctttt tcaaaatcct cttttttaat gaaaaaaaca gaacaagaat
    11641 ggctggaaga attagggcct gagcgatatc atatattgcg ccaaaaaggc acagaacgtc
    11701 cttttacagg gactttaaat aatgaatatc gtccaggagt ctataaatgc ggtggctgtg
    11761 gcacccccct atttgatagt aatgctaagt ttgacagcgg ttgtggttgg ccttcttttg
    11821 atcgcagtgt tccggagtcc gtcgcctatg agcgagacac gagtcatagt atgtatcgca
    11881 ccgaaatttt atgtcaaaat tgtggcgggc atttaggtca tgtttttccc gatggtccaa
    11941 ccaagacagg tcagcgatat tgtgtgaatt cactctcgat aacttttgat gaaaaatctg
    12001 aagaaaaccc ggtttaaaac cgggttttta ttttgtaaat ttgctggcat tcaacccaaa
    12061 aaatttttga aaaaatgaaa tcttttgacg taataatact gggcagtgga cctggaggat
    12121 atgtaacagc gattcgggct tctcaattag ggctaaaaac cggnnnnnnn nnnnnnnnnn
    12181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnacagtaa ttgaaaaaga
    12361 aaatctcggt ggagtctgcc taaactgggg ttgtattcca accaaggcat tgcttaaaag
    12421 tgctcaagtg tttgactata tcaaacatgc cgatgattat ggaattaccg taagtgattt
    12481 tgataaagat ttttcaaaag tggtccagcg cagtcgttct gtagctgacg ggatgagtaa
    12541 aggcgttcaa tttttaatga aaaaaaataa aat
//
LOCUS       DPUP01000076            4563 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17084,
            whole genome shotgun sequence.
ACCESSION   DPUP01000076 DPUP01000000
VERSION     DPUP01000076.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4563)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4563)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4563
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..344)
                     /locus_tag="DHV98_02540"
     CDS             complement(<1..344)
                     /locus_tag="DHV98_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013752086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HCK05254.1"
                     /translation="MEIILKKDVENLGFTDDIVSVKNGYGRNYLIPQGLAVLATPSAK
                     KVLAETLKQRAHKEQKLVDDAKAEAAKLNGLEVKIAAKVGEGDKLFGSVSNADLAEAL
                     AVNKINLDKKFIT"
     gene            complement(358..654)
                     /gene="rpsR"
                     /locus_tag="DHV98_02545"
     CDS             complement(358..654)
                     /gene="rpsR"
                     /locus_tag="DHV98_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HCK05255.1"
                     /translation="MSSIEQQAKGKKDGEIRYLTPLNIETSKAKKYCRFKKSGIKYID
                     YKDPDFLLKFVNEQGKILPRRLTGTSLKYQRKVAVAIKRARHLALMPYVADMLK"
     gene            complement(658..996)
                     /locus_tag="DHV98_02550"
     CDS             complement(658..996)
                     /locus_tag="DHV98_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HCK05256.1"
                     /translation="MTHYETVFILNPVLSEEQIKETVKKFESFLVSKGAKMIAKEDWG
                     LKKLAYPIQHKKSGFYHLFEFTCDGEPINDLEVEFRRDERIMRYLTVKLDKHAVAWAE
                     KRRTRNKQNA"
     gene            1342..2061
                     /locus_tag="DHV98_02555"
     CDS             1342..2061
                     /locus_tag="DHV98_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010522247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HCK05257.1"
                     /translation="MMDQTTLNCAVVDDSTLQRLSIVKLINEHPSLKLAAQYNSAEEA
                     KEGLTSQQIDLVFLDIEMPRVSGFDLLDDMTQKPQIIFVTGKTKYAFKAFDYDAIDYL
                     RKPIAKDRFLNAVHKAIVNYKLRNEEGFDDEDFIFVKSNLKKRKVFLSELKYVEALGD
                     YVKLVTEHDSLVVLSTMKAFEQILPADRFLRIHKSYIVNLDKVQRYNSKQIELEKQSL
                     PLSRNRKTDLVAALAAAAGKS"
     gene            complement(2065..4514)
                     /gene="priA"
                     /locus_tag="DHV98_02560"
                     /pseudo
     CDS             complement(2065..4514)
                     /gene="priA"
                     /locus_tag="DHV98_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783104.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
BASE COUNT         1267 a         1023 c          927 g         1344 t
ORIGIN      
        1 gtgatgaatt tcttgtctaa gttgattttg tttactgcca aagcctctgc caaatcagca
       61 ttacttacag aaccaaataa cttatctccc tcaccaactt ttgcagcaat tttgacttcc
      121 agtccattaa gtttcgctgc ttcagctttg gcatcatcaa ctaacttttg ctccttgtgg
      181 gcacgttgct ttaaggtctc agcgagcacc ttctttgcag aaggagttgc caatacagca
      241 aggccttgag gaatcaaata atttcttccg tatccgtttt taaccgatac aatatcgtct
      301 gtgaatccaa gattctcaac gtctttttta agtattattt ccatttcctt gctctattta
      361 ttttaacata tcggccacat atggcatcag ggccaaatga cgtgctctct tgatggctac
      421 agcgacttta cgttggtact tcaatgaagt tcctgtcaaa cgacgtggta aaatctttcc
      481 ttgctcgttt acaaacttca acaagaagtc tggatctttg tagtctatat atttaatgcc
      541 tgattttttg aatcggcagt atttcttggc tttagaggtc tcgatattca gcggggtgag
      601 atatctgatt tctccgtctt ttttgccttt tgcttgttgc tctattgatg acatagctta
      661 tgcgttttgt ttgtttctag ttcttctttt ctctgcccaa gccacagcgt gcttatcgag
      721 tttaacagtg aggtagcgca tgatgcgttc gtcacgacgg aattcaactt ctaaatcgtt
      781 gatgggttct ccatcacaag tgaattcaaa taagtgataa aaaccacttt ttttgtgttg
      841 gattggataa gccagctttt tcaagcccca atcttctttg gcgatcatct ttgcaccttt
      901 agaaacaaga aaactttcaa atttcttaac tgtttccttt atctgctctt cagataaaac
      961 gggattcaag atgaaaacag tttcgtaatg agtcataata tattgattta attcccagca
     1021 ccttgctgag agcgtgcaaa aataaggcat tatttggaaa ctacaaagcc taaagactaa
     1081 ggtttttttg tgcgctgatg tgggtacact tgtctagaaa tgaattacct aaatcgtcaa
     1141 taaggccccc tagggtcttg attcatcaaa tgccattttt tgccatgatc gagctcaatt
     1201 tataaggcca aaattatcga agggagcccc tgattaagat aaaaactcag tttaatggtt
     1261 cattttatca gattaaagcc catcaaaact tgtgcaacta tttttaattg actaatattg
     1321 tttgtcctaa aacctcacct tattatggat caaaccacgt tgaattgtgc tgttgttgat
     1381 gactcgaccc tacagcgact ttccatagta aaactgatca atgaacatcc ttctttaaag
     1441 cttgctgcgc aatacaatag cgccgaggag gccaaggagg gattgacttc acaacaaatt
     1501 gatttggtct ttcttgatat tgaaatgcca agagtctcgg ggttcgatct tctcgatgac
     1561 atgacacaaa agccgcaaat tatctttgtg acgggtaaaa ccaaatatgc ctttaaagct
     1621 tttgactacg acgccattga ttatttgcgt aaacccattg caaaagatcg ttttttaaac
     1681 gccgttcata aagccatcgt caactataaa ttgcgcaatg aagaaggatt tgacgacgag
     1741 gattttattt ttgtcaagag caacctcaaa aaacgtaaag tcttcttgag tgaacttaaa
     1801 tacgttgaag cattagggga ttatgtaaag cttgtcacag aacatgactc attggtggtc
     1861 ctctctacca tgaaagcctt cgaacaaata ctccctgcgg atcgttttct gcgtattcac
     1921 aaatcgtata tcgttaattt agataaggtt caacgctaca acagcaaaca aatagagctt
     1981 gaaaaacaaa gtcttccctt aagccgaaat cgtaaaactg atttggttgc cgctttggcc
     2041 gccgccgcgg gtaaatctta gtttttaatt cacaggatct acgtcaaaag acacgctaac
     2101 gcgcgcaaat tctttttggg cgataaaacg ttgccatact ttggtcacaa aaccctttgt
     2161 tttagataag gattgttgtt gcggcacttt aattaagagc tgttggatgt actgatttct
     2221 tattctcgag acgggcggtg cgaccggtcc caaaaccaag gatcccatct tttgctcgat
     2281 tactttaaat aaccatgtag ccgccgcttg actgagtttc aaatctcgat gcttaatcgt
     2341 cacgcggatg agcttacaaa atggcggata ttgaaattgc tccctctgct gactttgttg
     2401 gtcatacatg gctttgtaat ctccggccac gacctgctgg agcaattggt gtcccggagt
     2461 atatgtttga atgatcactc gtccctgaat accacgtcga cccgcacgac cgcttacttg
     2521 agacatgagt tggtaggccc gctcctgagc gcgaaaatca ggaaaattca tcaattggtc
     2581 cgcgttgagg atgcccacta aagacacgcg gtcaaaatcc agacctttgg ccagcatttg
     2641 ggttccgatg agtatgtcaa tttcaccttg attcatgcgc tcaatgagct gagtaaaggc
     2701 atgcttccct ttggtggtgt cttgatccat tcgggccaat cgagccgctg gaaataagct
     2761 ttgnntaaat taagttcaat ttgttgcgtt cccaagccga ttcggtccag ctgagggcct
     2821 gcgcaggcca tacaggcatg aggtaccccc tgttgatgac cacaataatg acatcgcaat
     2881 acctcttgat gactgtgata ggttaaactc acgtcacaat cggggcattg cggaatatgc
     2941 ccacaggtta aacattcaat catggccgag aacccacgtc ggttttgaaa taaaacaacc
     3001 tgctctttgc gagacaaagt ctcctctatg gccgtaatca agggcgcact aaaatgttgt
     3061 cgcatcaatt tcttgcgata ttgctcagcc aaatcaacta actctatagt gggcagcgtg
     3121 gctcctccaa agcgctcatt caaagaaacc aatccaaatt tattctgctg cgcattatag
     3181 taagtttcta aggaaggtgt ggcagagcct aaaagaactt ttgcgctatt taagtgcgcc
     3241 agcataatcg ctgcatctct accgtgataa cgcggtgcag gactgtgttg tttcaatgag
     3301 ggctcgtggg attcatcaag aacaaccaag cccaaatctt taaaaggcag gaatactgca
     3361 gagcgcgccc caaccacaat gtgaaccgag ggatctcctt tttttacttt ctggaaaagc
     3421 tcaacgcgct ctgccggggt ttgacgcgag tgatacaccc caacttgagg tccgtaaaat
     3481 cgctgtaatc gcctgattaa ttgggtggtt aaggcaattt ctggcacgat aaacaagact
     3541 tgctttccgc ccgctatgaa tcgttgcatc aaatgcatgt acacccgagt ttttccgctc
     3601 gatgtaatgc cgtgcaacaa acagacattg ccctgatcaa agtaagtatt gacttgatta
     3661 aaggcttgtt tctgagcggg ggacaattcc gaaagaacct ctgtggggcc ctcgtgcggc
     3721 aaaaggcgat ctaaggcgtg ttcctgggca agcacccact gtttatcgat taacgcgttt
     3781 aatgcactcg acgtcgcttg aactgcctta agtaattggg tttgctgaat ctcttcctca
     3841 tatggtttag aaagtaaata aagcattaat tcgcgttgtt tcggtgcccg attcagtccc
     3901 tccaaaataa gttttaaact agattcacct aaaatatcgg gattaagacg cacaaaacgt
     3961 cgcataaggg gtttgtactt atcgtccaat tgctcttgaa cttcaatcaa accacgatca
     4021 ataagggcat agatgacccc cattactgaa cttcgcgata gaatcgatcg aacctcatct
     4081 atggaaagtc gcggttgagc ggacaaggcc tccataatca aaaattctgc gtcacttaaa
     4141 ttttcccaag cgttaggatc aggattcaaa gacgcgataa aggtttcact ctccagaagc
     4201 atggccccag gcagtgccgc tttcatgacc tcacctaaag tgcacatata atagcgcgcc
     4261 atccattgcc aaaatgacaa ttgcatcgca ctcactatag gccgctgatc aagaatttga
     4321 tcaatttcct ttgtctgata atctggtaat tcttgagcgc caaccccata aactaatgcc
     4381 gtacgtaatt tatttcttcc aaaaggcacc acaacacgca tccccggtct aagaaaagaa
     4441 gcttctgcct cacggacccg ataggtgaag gtttggttta tgggcaaggg aacaatgaca
     4501 tcaataaagg gcataaacgt ttaatcagca gattttttta agggcacaaa acgctcctta
     4561 agt
//
LOCUS       DPUP01000077            4051 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23579,
            whole genome shotgun sequence.
ACCESSION   DPUP01000077 DPUP01000000
VERSION     DPUP01000077.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4051)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4051)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4051
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..226
                     /locus_tag="DHV98_02565"
     CDS             <1..226
                     /locus_tag="DHV98_02565"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05258.1"
                     /translation="DHIFIIRGMKHSLGLPTTFLLSDQKQILNVSRLLTHHYSLPYEA
                     SYNKHFQYFTQKVASIRAYEPENQNINLYR"
     gene            complement(235..>370)
                     /locus_tag="DHV98_02570"
     CDS             complement(235..>370)
                     /locus_tag="DHV98_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013188311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCK05259.1"
                     /translation="AEKFGINYKILKIHNPWLREGHLNNSSRKEYTIAIPEPGYYSAP
                     "
     assembly_gap    371..584
                     /estimated_length=214
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<585..1418)
                     /locus_tag="DHV98_02575"
     CDS             complement(<585..1418)
                     /locus_tag="DHV98_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HCK05260.1"
                     /translation="MNLFKWRYFIVLFFLCGVFLLIAQQEVVSEDNWPNTIEDFNDSH
                     WVSAHPIPTEMSFADEPVPLHNPDIQERMDREILVNAYWQSNAFLLMKRTHKYGPLID
                     SILVAENVPLDFKYLAVIESGLQNVSSPAGAKGFWQFMRSTAKEFDLEVNANVDERFN
                     LVLATQAAARYLKQARDEFGSWTLAAASYNAGRAGIRRELTRQGVSNYYDLLLNEETS
                     RYVFRILAVKRLLEEPQQYGFQYNSDHLYQRIPTRKLKVDTVVHDFVAFAEKFGINYK
                     IL"
     gene            complement(1464..2126)
                     /locus_tag="DHV98_02580"
     CDS             complement(1464..2126)
                     /locus_tag="DHV98_02580"
                     /inference="COORDINATES: protein motif:HMM:PF12697.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCK05261.1"
                     /translation="MTLNVYLIPGMSSRRESFEALTLPDHCSATVIPWLLPKRKEPLI
                     DYAKRMLVSIDTQAPFVLIGVSFGGIVAQEALNFLTPKALILISTVKSDLEKPAWMRW
                     AYKAQVHKLLPYYIAGHLAHKPLHMLPDLWQKRWKQYDYYLPMRHPEYLSWGVDQVLK
                     WKGPSVNVEVPLFHIHGDSDDLFPLKNIKDAQVISGGPHIMILTHAKAVSKLLARICQ
                     GL"
     gene            2245..>2454
                     /locus_tag="DHV98_02585"
     CDS             2245..>2454
                     /locus_tag="DHV98_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05262.1"
                     /translation="MKKILYPSNTRGSADYGWLKANYSFSFANYYDPERIQFGALRVL
                     NDDSIAPGMGFGKHPHDNMEIVTIPL"
     assembly_gap    2455..2582
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2583..3109
                     /locus_tag="DHV98_02590"
     CDS             <2583..3109
                     /locus_tag="DHV98_02590"
                     /inference="COORDINATES: protein motif:HMM:PF02678.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05263.1"
                     /translation="EIVTIPLSGGVLHEDSMGHKGTVMPGEVQVMSAGAGVTHSEFNA
                     SSTEPLKLFQIWVFPDRQNVSPRYDQKTIASLLQKNELSPVVVPRDSAKEDQLWIHQN
                     AYFYWGEFDTDLNYSFSLSAPGQGLYLMVVEGSATLADQTLNVRDALGLWDCEAIEIS
                     IKANTKILALEVPL"
     gene            3120..3419
                     /locus_tag="DHV98_02595"
     CDS             3120..3419
                     /locus_tag="DHV98_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HCK05264.1"
                     /translation="MKDQVEIVDNTFLRQFELEIGDNMARIEYALQERKIFLTKFDMC
                     QELLDQGFQEIFIKAVFEEVKNRGISLVPTSPEIAHFFKKNRRLYKPLLPIGMNI"
     gene            complement(3488..4009)
                     /locus_tag="DHV98_02600"
                     /pseudo
     CDS             complement(3488..4009)
                     /locus_tag="DHV98_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296031.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
BASE COUNT         1097 a          840 c          753 g         1019 t
ORIGIN      
        1 cgaccacatt tttatcataa gaggcatgaa acatagcctt gggttaccca caaccttcct
       61 cctgagcgat caaaaacaaa tcctcaatgt aagtcggtta ctgacccatc attacagtct
      121 gccttatgaa gcgtcgtata ataagcactt tcaatatttt acccaaaaag ttgcttccat
      181 acgggcttat gagcccgaaa atcagaacat caatctatat cgataaaaaa tcgattaggg
      241 cgctgagtaa taacctggtt ctggaatagc gatggtgtat tctttccgag aggagttgtt
      301 taaatgtcct tctcgcagcc aggggttgtg aattttgaga attttataat tgattccaaa
      361 tttttcagca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngagaat tttataattg
      601 atcccaaatt tttcagcaaa ggccacaaaa tcatggacca cggtatcaac tttaagctta
      661 cgcgtgggaa tccgctgata tagatgatcg ctgttatact gaaaaccata ctgctgaggt
      721 tcctccaaaa ggcgctttac cgccaaaata cgaaacacat atcggctcgt ttcttcattg
      781 agtaagaggt cgtaataatt tgaaacccct tgacgtgtga gttctcgcct tatccctgca
      841 cgccccgcat tatacgaagc cgccgctaaa gtccaggaac caaactcatc acgcgcttgt
      901 tttaaatagc gcgcagcggc ctgagtggcc aacaccaaat taaaacgctc atcgacatta
      961 gcgtttacct ctaagtcaaa ttccttagcc gttgagcgca taaattgcca aaaccccttt
     1021 gccccggctg gagaactcac attctgaaga ccactttcaa tcactgctaa atatttgaaa
     1081 tcaagaggga cattttctgc gaccaaaatt gaatcaatca gtgggccata tttatgggtg
     1141 cgcttcatca gcagaaaggc attagattgc caatacgcat tgactaaaat ttctcgatcc
     1201 atgcgctctt gaatatctgg attatgcaag ggcactggct catcagcaaa ggacatttcc
     1261 gttggaatag gatgagcgct cacccaatga ctgtcgttaa agtcttcaat cgtattaggc
     1321 cagttgtctt ctgagaccac ctcttgctgg gcaatcagca gaaaaacgcc acacaaaaaa
     1381 aacaacacaa taaaatagcg ccacttaaat aaattcataa atcaataaat tttgacttaa
     1441 aattaatcaa tcaataacgg aatctaaagc ccttggcaaa ttcttgctaa caatttactc
     1501 accgccttgg catgagtcaa aatcattata tggggacctc cgctgatcac ctgggcatcc
     1561 ttgatgtttt tcaaggggaa taaatcgtca ctatccccat gaatgtgaaa taatggaacc
     1621 tccacattaa cagaagggcc tttccactta aggacttgat cgacgcccca ggacaagtat
     1681 tctggatggc gcatgggcag ataataatcg tattgcttcc atcgcttttg ccatagatcg
     1741 ggcaacatat gtagtggttt gtgcgccagg tgtccggcaa tgtaatacgg taaaagctta
     1801 tgaacctgag ctttgtaagc ccaacgcatc caggccggtt tttccaggtc ggattttacg
     1861 gttgagatta aaataagggc tttgggggtc aaaaaattta acgcctcttg agccactatt
     1921 cctccaaaag aaaccccgat aaggacaaat ggcgcctgag tatcgatgga aactaacatt
     1981 cttttggcgt aatcgataag cggctcttta cgctttggga gcaaccacgg aatgaccgta
     2041 gccgagcagt gatccggtaa agtcaaggct tcaaaactct cccgccgaga ggacattcca
     2101 ggaatcaaat aaacgtttaa tgtcatgggt ttttatgggc ttccctctat ttaaattcaa
     2161 ctttgcccct tattgattat ctttggagtc tcgcggtttt gtttctcatt ttttgagaac
     2221 caccttccgc gaatgcttaa aactatgaaa aagattttat atccgtccaa cactagagga
     2281 tcagcagact atggctggct taaagcaaat tactccttta gttttgccaa ttattacgat
     2341 cccgagcgta ttcagtttgg cgcattaaga gtgcttaatg atgattcaat tgccccagga
     2401 atgggttttg gcaagcaccc ccatgacaat atggagattg tgaccattcc cctannnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nntggagatt gtgaccattc cccttagcgg aggggttttg catgaggatt ctatgggaca
     2641 caaaggcacg gtgatgcccg gcgaagttca ggtaatgagt gctggcgcag gagtcacaca
     2701 cagcgaattt aacgccagta gcaccgaacc gcttaaatta tttcaaatat gggtttttcc
     2761 cgatcgtcaa aacgtaagtc cacgttacga ccaaaaaaca attgcttcat tacttcaaaa
     2821 aaatgagttg tcccctgttg ttgttcctcg tgattcagca aaagaggatc agctttggat
     2881 tcatcaaaat gcctatttct actggggaga atttgacact gacctaaatt attccttttc
     2941 cttatcagcc cctggtcaag ggctttattt aatggtcgtc gagggttctg cgaccctagc
     3001 agaccaaaca ctaaatgtac gcgatgccct aggcctgtgg gattgcgaag caattgaaat
     3061 ttcaattaag gccaatacaa aaattttagc cctagaggta ccgttataat ttagtaacta
     3121 tgaaagacca agtagaaatc gttgacaata cttttttaag acaatttgaa ttagagattg
     3181 gggacaatat ggcccgaatt gaatacgcct tgcaagagcg taaaatattc ttaacaaaat
     3241 ttgatatgtg tcaagaactc ttggatcagg gctttcaaga aatttttatc aaggccgtat
     3301 ttgaggaagt caaaaacaga ggcatcagtc ttgtgcctac aagccctgaa attgctcatt
     3361 tttttaaaaa gaacagacga ctctacaagc cgctgctccc gataggaatg aacatttaga
     3421 aattcatggc ctctgttatg tcgatcgcct gagcacttga actagactta gtttttgtct
     3481 gcgcaccaac ccaatcaaaa cgaaccaatc catcgtgatc tatatcgccc aggactaccg
     3541 gatgtaatgt attgactaaa tcaggattcc aaggcgtttt aactttgaca taatttggcg
     3601 taaagccatg gatgtagcct tttttgtttt ccccttcaaa gaggacggta tgggtactgc
     3661 cgagctggct attgtacaag gcacgtctct ttttaaccga aagaccacgc aacattttac
     3721 tgcgcttttg acgcaccttg acaggaacca cctcagagag ttcagtagcc ttagtcccgg
     3781 gtcgttctga ataggtaaat acgtgaagat aacttacgtc caaatcactt aaaaagttgt
     3841 acgtctccaa aaacagcgcc tcggtctctc ccgggaaccc cacaatgaca tccaccccga
     3901 tgcaggcatg gggcatcact gatttgatta aggccacccg atctgtataa agttcacgtt
     3961 tatagcgccg ttgcatttta gccaaaataa tattgctccc actttgaagg agatcggaag
     4021 agcacacgtc tgaactccag tcacatcacg a
//
LOCUS       DPUP01000078            6782 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10715,
            whole genome shotgun sequence.
ACCESSION   DPUP01000078 DPUP01000000
VERSION     DPUP01000078.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6782)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6782)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6782
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..506)
                     /locus_tag="DHV98_02605"
     CDS             complement(<1..506)
                     /locus_tag="DHV98_02605"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HCK05265.1"
                     /translation="MAKNISLWDHCDPQNHAPQIVAVKLSPKGERSVRQHHPWIFDQN
                     IIKTNKTPKAGDVGIVFAHKSNKVIGLGLLDPKSPIALKMLHFDGGSKINEAFFHDLL
                     KKAIDKRKPLIDKTNAMRLVFGENDGLPGLIVDAYDAVMVIKIYSLMWLPYMAQIKDV
                     LLNLCAPKS"
     gene            complement(490..1269)
                     /locus_tag="DHV98_02610"
     CDS             complement(490..1269)
                     /locus_tag="DHV98_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurium resistance protein TerC"
                     /protein_id="HCK05266.1"
                     /translation="MEDLFTLEHLTSLVLLIMLQAVLGLDNLLYISIASKQAPEKDQA
                     RVRTIGIAWAIVLRIVLLFLLLQLIQWFQNPWFVIADNAYFSGSFNFHSIIVLIGGVF
                     IMYTALKEIWHMMYFDPQLEKSSGGTKSVTQVILLIIVMNLVFSFDSILGAMALTDEF
                     WVMATAIVVGGLLMIWLSGRVTAFLKKNRLYEVLGLFILFIVGIMLLSEGGHLAHIYV
                     FGNPITPMTKTTFYFVITVLILIDIVQSKYQKNLKHSGEKH"
     gene            complement(1271..3208)
                     /locus_tag="DHV98_02615"
     CDS             complement(1271..3208)
                     /locus_tag="DHV98_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HCK05267.1"
                     /translation="MLDLYQRMLKPRLIEEKMLILLRQGKISKWFSGIGQEAISVGVA
                     SVLTPQEYILPMHRNLGVFTTRDIPLYRLFSQWQGKANGFTKGRDRSFHFGTQEFNIV
                     GMISHLGPQFGVADGIALGNLLKQNNQVCAVFTGEGGTSEGDIHEAMNVASVWGLPVL
                     FCIENNGYGLSTPTSEQYNCAHLVDRALGYGMEGHRLEGNNILEVYTHLSDIVHSMRE
                     NPRPVLIEFDTFRMRGHEEASGTKYVPQELMDQWALKDPLETYAAYLKDQKVLTQEYE
                     DVLKTQIIDEINEHLGLAFDEPKIQSTEINELSDVFQEAVFELINPSTEVQEMRFVDA
                     LAQGLGQAMEHHDDLVIMGQDIAEYGGVFKITEGLLEKFGHGRVRNTPICESAILSAA
                     MGLSISGYKTVVEMQFADFVSSGFNPIVNYLAKSHYRWGQKADVVVRMPCGAGVGAGP
                     FHSQTNEAWFTHTPGLKVVYPAFPEDAKGLLASSIADPNPVLFFEHKALYRSVRGMVP
                     QNYYHLPLGKAAVLTHGDQVALITYGAGVHWALELPEDLKAHCRIVDLRSLVPLDKET
                     IIEVVKATGKVLLLQEDSMFGGIASDLSAIISEECFEYLDAPIRRVASLETPIPFASA
                     LEQQYLAKNRLKETLEDLLAY"
     assembly_gap    3223..3273
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3477..4427
                     /locus_tag="DHV98_02620"
     CDS             3477..4427
                     /locus_tag="DHV98_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavonol synthase"
                     /protein_id="HCK05268.1"
                     /translation="MTHIPSVDLADFLSEDPKRKAQFVTQIGDAYQEIGFVSLSNHFL
                     SPELMDNLYHEVKGFFNLPTAVKAKYEIPGLAGQRGYVSFGKEHAKGQSKGDLKEFFH
                     FGQEPSSDANLAQPYPENVSVTECPKFNETGMEAYRMLEKTGIYVLRALALYMNLDET
                     YFDPWVTNGNSILRPIHYPPITQEPDGAVRAGAHGDINLITLLMGASTGGLQVLTKEG
                     QWVDARPEEDQLVINVGDMLERHTNNKLRSTIHRVINPPRDQWDTPRYSIPFFMHPRS
                     DMKLDCLNTCISQDSPKAYPDITAGDFLEERLIEIGLRKK"
     gene            4450..4791
                     /locus_tag="DHV98_02625"
     CDS             4450..4791
                     /locus_tag="DHV98_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor SUI1-related
                     protein"
                     /protein_id="HCK05269.1"
                     /translation="MADLRDQLKHLFPEHAESNEPAEPDQDYPEFSAKDQTTPLICRF
                     EKRKGKGTTIIEGFEGDSEALKALAKAIKQQFSVGGGIKEHSIILQGNFRDQIMDFLK
                     QKGYKTKRVGG"
     gene            4788..5666
                     /locus_tag="DHV98_02630"
     CDS             4788..5666
                     /locus_tag="DHV98_02630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCK05270.1"
                     /translation="MNSLTVHIGGVPEHFNYPWYLLLKSKELHKEQINLRWRDFDGGT
                     GAMVHSLVNGEIDLAVMLTEGVTKAICDGAPIKLIQYFVSTPLIWGVHTHPVSGLTNR
                     QDLINRIKNTANPPLNVAISRHGSGSHLMAYLYAKSLGLDPNARLSFREVGDLEHALD
                     ALKHGQSDIFLWEKFTTQPYVSQFDFMRIDEYPTPWPCFVLAGREDFVINHSDTVEKI
                     KLVINKHAAAMLERPTLVHELATRYSQEPAAIESWLSKTQWSQHPVDSATLAQVQIEL
                     LDLGLIEQIYSDKLFF"
     gene            complement(5905..6627)
                     /locus_tag="DHV98_02635"
     CDS             complement(5905..6627)
                     /locus_tag="DHV98_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HCK05271.1"
                     /translation="MQLIQADSWQELMTQEATKDYWLPLLKFVQAQYQSTQCFPPQEQ
                     IFRAFELTALDKISVVILGQDPYHGMGQAHGLAFSVPEGVTMPPSLLNILKEVENNER
                     ERLIARGGTNPQDGENRLHLTHHSGDLSHWATQGVLLLNSVLTIERGKAGSHQKKGWE
                     LFTDAVIKEISQKNSGVVFMLWGRFARGKEKLIDSSRHCILRSGHPSPLSANRGLWFG
                     NNHFNRANQYIEQRGGSRIRWK"
BASE COUNT         1950 a         1574 c         1400 g         1807 t
ORIGIN      
        1 gattttgggg cgcataaatt caaaagaacg tctttaatct gcgccatata gggcaaccac
       61 atgagactgt aaatctttat gaccataacc gcatcatagg catcgacaat aagccctggc
      121 aaaccatcat tttctccaaa aactaagcgc atagcgttgg ttttatcaat caatggtttt
      181 cgtttatcta tcgctttttt taaaaggtca tgaaaaaaag cttcattgat tttagaccca
      241 ccatcaaagt gcagcatttt tagcgctatt ggagacttgg gatccagcaa tcccaatcca
      301 atcactttat ttgatttatg ggcgaaaaca atgccaacat cgcctgcttt aggtgtttta
      361 ttggttttga taatgttttg atcaaaaatc cagggatgat gttgacgcac agagcgttct
      421 cccttggggg ataacttaac agcaacgatt tgtggcgcgt ggttctgtgg atcacaatga
      481 tcccaaagac taatgttttt cgccactgtg tttgaggttt ttctgatatt ttgattgcac
      541 gatgtcaatt aaaataagaa cggtaatcac aaaataaaat gtggtttttg tcatcggcgt
      601 tatcgggtta ccgaagacat aaatatgagc caaatgcccg ccctcagaga gcaacatgat
      661 cccgacaata aataagataa atagcccaag gacttcgtac aatcgattct ttttaagaaa
      721 tgcggttacg cgccctgaaa gccaaatcat aagcaaaccg cccacaacaa tagctgtagc
      781 cataacccaa aactcatcgg taagcgccat ggcccctaaa attgagtcaa aagaaaagac
      841 caaattcatg acgataatca gcaatatcac ttgagttacg cttttggtcc ctccagagga
      901 tttctcgagt tgaggatcaa agtacatcat atgccaaatt tctttaagcg ctgtgtacat
      961 gataaatacc ccaccgatta acacgataat gctatggaaa ttaaaggacc ctgagaaata
     1021 agcattatcg gcaataacaa accacgggtt ttgaaaccat tgaatcagtt gtaagagtaa
     1081 aaaaagcaaa acgatacgca agacaatagc ccaagcaatt ccaatagtgc ggacgcgtgc
     1141 ttgatccttt tcgggggctt gctttgaggc aatggatata taaagcaagt tgtccaagcc
     1201 cagcactgct tgcagcataa tcagtaaaac aagtgaggtt aaatgttcta atgtaaatag
     1261 gtcttccata tcaataagct aaaagatctt ctagcgtctc ttttaatcgg ttttttgcca
     1321 aatattgctg ttctaaagcg ctggcaaaag gaatgggtgt ttctaaactg gccacacgac
     1381 gtatgggcgc atctaaatac tcaaaacact cctcggaaat aatggctgat aaatcagagg
     1441 caataccacc aaacatactg tcttcttgaa gtaacaagac cttacctgta gccttgacca
     1501 cttcgattat ggtctccttg tccaaaggca ccaaactgcg cagatcgaca atacggcaat
     1561 gcgccttcag gtcttcaggt aattctagcg cccaatgcac cccagcacca taggtaatta
     1621 gcgctacttg atccccgtgg gtgagcacag ccgcttttcc caggggtaaa tgataataat
     1681 tttgaggaac cattcctcgt acacttcggt acaatgcttt gtgttcaaaa aacaacacag
     1741 ggttagggtc ggcaatactc gaggcgagca agcccttagc gtcttcggga aaagcaggat
     1801 aaaccacttt caagcccggt gtatgggtga accatgcttc gttggtttga ctgtgaaaag
     1861 gccccgcccc tacgccggct ccacagggca tgcgcaccac cacatcggcc ttttgacccc
     1921 agcgataatg acttttggcc aaatagttca caatggggtt aaacccggaa ctcacaaaat
     1981 cagcaaactg catttcgacg acagttttat atccactaat cgatagaccc atggccgcag
     2041 aaagtatggc cgattcacaa atcggcgtat tgcgcacccg tccgtgtcca aatttctcca
     2101 aaagcccttc agtgatttta aatacgccac cgtattcagc aatatcttga cccatgatca
     2161 ctaagtcatc atgatgttcc atagcctgac cgagtccttg agctagggca tctacaaagc
     2221 gcatttcttg aacttctgtc gaaggattaa ttaactcaaa aacagcttcc tggaacacat
     2281 cacttaattc attgatttcg gtcgattgta ttttgggctc atcgaaggcc aagcctaaat
     2341 gctcattaat ctcatcgata atttgagttt ttaatacgtc ctcgtattct tgggtgagca
     2401 ccttttgatc ttttaaatag gcggcgtagg tttctagggg gtccttcagc gcccattgat
     2461 ccatcaattc ttgcggaaca tacttggtgc cactagcctc ttcatgtcca cgcattctaa
     2521 aggtgtcgaa ctcaattaaa accggacgcg ggttttcacg catcgaatgg acgatatcgg
     2581 ataaatgggt gtaaacttcg aggatattat tgccttctaa acgatggccc tccatgccat
     2641 accccagagc acggtccact aaatgggcgc agttgtattg ttcagaagtt ggcgtagaca
     2701 ggccatatcc attgttctcg atgcaaaaaa gcacgggaag accccaaaca gaagcaacat
     2761 tcatcgcctc gtgtatatcg ccttcgcttg tccctccctc gcctgtaaaa acggcgcaaa
     2821 cttgattgtt ttgtttgagt aaatttccca aagcaatccc atcggccaca ccaaattgag
     2881 ggcctaaatg tgaaatcatc ccaacgatat tgaactcttg tgtcccgaaa tgaaaactcc
     2941 gatcgcgccc cttggtaaac ccattagctt ttccttgcca ctgggagaac aatcgataaa
     3001 gcggaatgtc tcgcgtagta aacacaccga gatttctgtg catgggcaag atatactcct
     3061 gaggcgttag tactgaggcg acccctaccg aaatagcttc ttgcccaata ccactaaacc
     3121 atttactaat tttaccctga cgcagcagaa tgagcatttt ctcctcaatc aagcgtggtt
     3181 ttagcatgcg ctgatacaaa tccaacaagg tggcattatc gannnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntacaaat ccaacaacgt ggcgtcatcg
     3301 aggtgtttac ggtcaaaatc aaaaggtttt accgggatgg tttcgcggct catagaaaaa
     3361 taattactcg ggttaaaagt aacaattaat tgtctcttaa gccttcagcc atgggtaaaa
     3421 ttttgagccg ctaaccgcac aaattcagta tatttgtcgt gttaatcttc atattcatga
     3481 cccacatccc ctcagttgat ttggctgatt ttttatcaga ggacccaaaa cgaaaagctc
     3541 aatttgttac ccagattggt gacgcttatc aggaaatagg ttttgtttct ctgagcaatc
     3601 actttttatc acctgaactc atggataact tataccatga agttaagggg ttttttaatt
     3661 tacccacagc ggtaaaggct aaatatgaaa ttccgggatt agctggccag cggggctatg
     3721 tctcttttgg aaaagaacac gccaaaggcc aaagtaaagg agatttaaaa gaattctttc
     3781 actttggaca agaaccctct tcggatgcaa acctggctca gccttatcct gagaatgtgt
     3841 ccgtgacgga atgccccaaa ttcaatgaaa cgggtatgga ggcctacaga atgctggaaa
     3901 agacagggat ttacgtactg agagctttgg ccctatatat gaatttagac gaaacttatt
     3961 ttgacccatg ggtaaccaat ggcaacagta tcttaagacc aatacactac cctcctatca
     4021 cccaagaacc tgacggcgca gtgcgcgccg gtgctcacgg ggacattaac ttaattaccc
     4081 ttttgatggg ggcctcaacc gggggactac aggtattgac taaagaaggc caatgggtcg
     4141 atgcacgccc tgaggaggat caattagtga tcaatgtggg cgatatgctt gaacgccaca
     4201 cgaacaacaa gctgcgttcg acaattcacc gcgtgatcaa tccaccccga gaccaatggg
     4261 atacacccag gtattcaata ccttttttca tgcatcctcg gtcagacatg aaactggatt
     4321 gtttgaacac ttgtatcagt caagattcgc caaaagccta tccagacatt accgctggcg
     4381 actttttgga agagcgttta attgaaattg gcctaagaaa aaaatagtcc gttaaatcga
     4441 atttttacca tggccgactt acgcgatcag ctaaaacact tgtttccaga acacgccgag
     4501 tccaatgaac cggcagagcc cgatcaagac tacccagagt tttctgccaa agatcaaacc
     4561 acgccactca tttgccgatt tgaaaaacga aaaggtaaag gaacgaccat aatcgaaggg
     4621 tttgagggag attcagaagc cttaaaggca ttggccaaag cgataaaaca acaatttagt
     4681 gtgggcggag gcattaaaga gcacagcatc atcttacagg gcaattttcg tgatcaaatc
     4741 atggattttc tcaaacaaaa aggatacaaa accaagcgtg tcggcggatg aattctttaa
     4801 cagtgcatat cggtggggtt ccagaacact ttaattatcc ctggtattta ctgctgaaat
     4861 ccaaagagct tcataaagag cagatcaatt taagatggcg cgattttgac ggtggtacag
     4921 gagccatggt ccattcctta gttaatggag aaatcgattt ggcggtcatg ctcaccgaag
     4981 gggtaaccaa ggccatatgt gatggtgcgc cgatcaaact tattcagtat tttgtttcta
     5041 cgccacttat ttggggcgta cacacgcatc ccgtcagtgg tttaaccaac aggcaagact
     5101 taataaatcg aattaaaaat accgcgaatc cgccccttaa tgtcgccatc agtcgtcatg
     5161 gcagcggctc tcatttgatg gcttatttat atgccaaatc tcttgggctt gatccaaatg
     5221 caaggctttc ttttcgtgag gtcggagacc ttgaacatgc tcttgacgca ctgaagcacg
     5281 gacaaagcga tatttttctt tgggagaaat tcaccaccca gccctacgtc tcacaattcg
     5341 attttatgcg tattgatgag tatcccaccc cttggccttg ttttgttctc gccgggcgcg
     5401 aagattttgt tatcaatcat tctgataccg tagagaaaat aaaattggtg attaacaaac
     5461 atgccgcggc catgcttgag cggcccaccc tagtgcacga gctcgccacg cgttatagcc
     5521 aagaaccagc tgcgattgag tcctggctct ctaaaacgca atggagtcaa catccagtgg
     5581 actcagcgac cttagcgcaa gtccaaatag agctcttaga cctaggactt atcgagcaaa
     5641 tttattccga taaacttttt ttctaaattt tttacccccc tacgcaaccc ttcatcacaa
     5701 cattgtatct ataagatata aactcagtgg tatggtaact tttttaattg ttctcggcgg
     5761 tcttttagta acgaactact tattactgga attttcctgc aatgatgctt ctgaggcaga
     5821 ctatcctcaa aaagactgac ccagccctcc tgtttgattc gttccaagag gcaccgtccg
     5881 agttatcggg aatgcctaaa tgacttactt ccaccttatt cgactacccc cgcgctgttc
     5941 aatatattga ttggccctat taaaatgatt gttcccaaac cataaaccac ggttggcact
     6001 cagaggcgaa ggatgaccac tgcgtagaat acaatgtcgc gaagaatcga tgagtttctc
     6061 ctttccccgg gcaaagcgcc cccatagcat aaagaccacc ccactgtttt tttgacttat
     6121 ttccttaatg acggcatcgg taaatagctc ccatcctttt ttttgatgac ttcccgcctt
     6181 accacgttct atggtgagta ctgaattgag caataaaacg ccttgtgttg cccaatgcga
     6241 caaatctcct gaatgatggg tcaaatgaag tcgattctcc ccatcttggg gatttgtacc
     6301 ccccctagcg ataaggcgtt cacgctcgtt attttcgacc tctttgagga tattgagcag
     6361 cgatggtggc atggttacgc cctcaggcac agagaaagcc aaaccatggg cttgtcccat
     6421 tccatgataa gggtcttgcc ccaatataac gacactaatc ttatcgagcg ctgtcaattc
     6481 aaaggctctg aaaatttgct cctggggagg aaaacattga gtgctttggt actgagcctg
     6541 gacaaatttc agaagcggca gccaatagtc tttggtcgct tcttgagtca taagctcctg
     6601 ccatgagtcc gcttgaatta attgcatttg tcgtactttt gaggtgaaat taatcaattt
     6661 ataagattat tttctgctat gaaaaccatt caaccgcaaa ccataagcga tttagagttt
     6721 gatcgggtgc tcgatcagct tgcgcagagg gcattgaccc aaggcggtaa aacgcgttgc
     6781 cg
//
LOCUS       DPUP01000079            5741 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11598,
            whole genome shotgun sequence.
ACCESSION   DPUP01000079 DPUP01000000
VERSION     DPUP01000079.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5741)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5741)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5741
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..2191)
                     /gene="secD"
                     /locus_tag="DHV98_02640"
     CDS             complement(<1..2191)
                     /gene="secD"
                     /locus_tag="DHV98_02640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HCK05272.1"
                     /translation="MQNKGLITVFAILFGLVSLYQLSFTFVANQVEDAAQVYANERHD
                     ATQSDERQQAVLRYIDSVAAEPQFFGIDYNTAKDKVLNKGLDLKGGINVILQVSVKDI
                     LAGLANNTKDPAFNQALADASELQKSSQSTYLESFFEAFDALPGENNLASPDIFFNKG
                     LEDQIISGMTNDEVKSVIARKVDESIASAFEVLRKRIDKFGVTQPNLQRLGNSGRILV
                     ELPGAKDVERVKKLLQSTAQLEFWEVVKEESITSFLLDADSKLKDLLAQRTPATEEAT
                     QEENEEEDLSDLLGGEDVVETNDPLLERPLLNRILPVRASNPGLASFSLKDTAVINGY
                     LKEPQVRALLSGEQRYYKFVWSIPEYNEAIGEEITSLYAIKGNREDTPELSGGVIVDA
                     QQSYTQAGRVSVTMQMNGVGAKIWEDMTEYAYNNQSQIAVVLDNVVYSAPGVSSGKIS
                     GGRSEITGDFTIPEAQDLANVLRAGKLPASADIIQAEVVGPTLGKEAIDSGILSFIIA
                     LSIVLLWMMLYYGKAGAFANVALVVNILFIFGILAGLGAVLTLPGIAGIVLTIGMSVD
                     ANVLIFERIREELAKGKSQRDSINDGFSNALSSILDANITTGLTGLILLVFGTGPIQG
                     FATTLLIGICTSLFTAIFVTRLFIDRFTYNGKSLTCSTAITKNLFRDVAIKFLAKRKV
                     AYAFSSVLILVSLGSLFTNGLNQGIDFVGGRTYTVRFDRDVNALEVQN"
     gene            complement(2327..3250)
                     /gene="mdh"
                     /locus_tag="DHV98_02645"
     CDS             complement(2327..3250)
                     /gene="mdh"
                     /locus_tag="DHV98_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HCK05273.1"
                     /translation="MKITVVGAGAVGASCAEYIAIKNFASEVVLLDIKEGFAEGKAMD
                     LMQTATLNGFDTKITGVTNDYRATAGSDICVITSGIPRKPGMTREELIGINAGIVQNV
                     SAALIEQSPETILVVVSNPMDTMTYLAHKVTGLPKNRIIGMGGALDSARFKYRLAEAL
                     DAPSSDIDGMVIGGHSDTGMIPLTRLATRSSVPVSEFLSIERLDEVREATKVGGATLT
                     KLLGTSAWYAPGAAVSTLVQSIACDQKKMMPCSALLSGEYGLDDICIGVPVILGRNGI
                     EKIVELDLDEKERTHLAESAEGVRKTNDLLA"
     gene            complement(3455..4447)
                     /locus_tag="DHV98_02650"
     CDS             complement(3455..4447)
                     /locus_tag="DHV98_02650"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05274.1"
                     /translation="MKRLLLFCSLFTAPFAQSQELESILLAAQDAERLTQDYIEPALK
                     GLVYSMNEGWYTTGKTHSVLGFDVTVGANMALVPNNDKNFLFRASEYNFVRSQVGDTE
                     SVSTVLGDDPDGTFFDVRVPVGDGTFKVAEFQMPGGIGPDFPLKGVATPMIQFGIGLP
                     TSTDLKIRFLPNIGVNDKVKNFMYGVGLQHDLTQYIPGLSVTPFSLSALVAYSNTKVT
                     YKIDDEDDLDDVSVVNGEGLFALNTLSFQAIGSVSLAILEFYASAGYGRGGSRLELNG
                     DYTLTYDLEDGNGVPLGQINETITNPLQFKADVNSPRFGLGMRVNLAIFKLFAS"
     gene            complement(4576..>5741)
                     /locus_tag="DHV98_02655"
     CDS             complement(4576..>5741)
                     /locus_tag="DHV98_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612499.1"
                     /note="negatively supercoils closed circular
                     double-stranded DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCK05275.1"
                     /translation="IPVEVAMVYNTSFNENLHSYVNNINTHEGGTHLSGFRRGLTTTL
                     KKYADASGLLDKLKFEISGDDFREGLTAIISVKVAEPQFEGQTKTKLGNRDVTAAVSQ
                     AVSEMLENYLEEHPNDAKTIVQKVILAAQARHAARKAREMVQRKTVMGGAGLPGKLSD
                     CSEQDPQKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEI
                     KNIFTALGVTIGTEEDAKALNLEKLRYHKIVIMCDADVDGSHISTLILTFFFRYMHAL
                     IKGGHVYIATPPLYLVKKGSKKAYAWNDKERDALSEEWGGGVGIQRYKGLGEMNAEQL
                     WDTTMNPDFRTLRQVTIDNGTEADRIFSMLMGDEVPPRRDFIERNAVYANIDA"
BASE COUNT         1642 a         1374 c         1122 g         1603 t
ORIGIN      
        1 cgttttgaac ctctaaagcg tttacatctc gatcaaaacg caccgtataa gtacgccccc
       61 cgacaaagtc aattccttga ttaagtccgt tcgtaaataa cgaacctaga ctcactaaaa
      121 tgagtactga agaaaaggca taggccactt ttctcttagc caaaaattta atcgccacgt
      181 cacggaacaa attcttggtt attgctgttg aacaggtcaa cgatttacca ttataggtaa
      241 aacgatcaat aaacaaacgc gtcacaaaaa ttgctgtgaa taaggacgta cagataccga
      301 tcaacaatgt ggttgcgaac ccttgaattg gtccggttcc aaagaccaga agaataagac
      361 cggttaatcc ggtcgtaatg ttcgcatcta aaatagacga taatgcatta ctaaatccgt
      421 cattaatcga gtcgcgctgt gattttcctt tggccagttc ttcacgaatc cgttcaaata
      481 taagcacatt tgcatctacg gacataccaa tcgttaaaac gatccctgca attccaggaa
      541 gggtcaacac ggcccctaag cccgctaaaa taccaaagat gaacaagatg ttcaccacta
      601 aagcgacgtt ggcaaaggcg cctgctttac cgtagtaaag catcatccaa agcaatacga
      661 tactcaaggc aatgataaag gaaaggatac cactatcgat ggcctctttt ccaagcgttg
      721 gtccaacaac ttcagcttga atgatgtccg ctgaagcagg aagtttacca gcgcgcaaaa
      781 cgttagctaa atcttgtgct tctggtatgg tgaaatcacc agtaatttca ctgcgaccac
      841 cggaaatttt acctgaactc actccaggtg ctgaatacac gacattgtca agaacaacag
      901 cgatctgtga ctgattgtta taggcatatt cggtcatatc ttcccaaatc tttgccccaa
      961 caccattcat ttgcatggta acagaaacac gccccgcttg agtgtaagac tgttgtgcat
     1021 cgacaatgac tccaccactg agttcagggg tatcttcgcg gttcccttta atggcataaa
     1081 ggctcgtgat ttcttcacca atggcttcat tgtattcagg aatactccaa acaaatttat
     1141 aatagcgttg ctcgccgctt agtagagcgc gtacttgtgg ctcttttaaa tatccgttga
     1201 ttacagcggt atcttttaac gaaaaagagg ctaaacctgg gttactcgca cgcacaggta
     1261 aaattctgtt gagcaaaggg cgctcaagca atggatcatt cgtctctacg acatcctcgc
     1321 caccgagcaa gtcagaaagg tcttcttctt cattttcctc ttgagtggcc tcctctgtag
     1381 ctggagtacg ttgggctaaa agatctttta attttgaatc ggcatcaagt aagaaagagg
     1441 taatgctttc ttctttaacc acttcccaaa attcaagctg tgccgtactt tgcaataatt
     1501 tcttaacccg ctccacatct tttgccccag gtaattcaac gagaatacgt cccgaatttc
     1561 ctaatcgctg caagtttggt tgggtgaccc caaacttatc aatacgcttg cgcaatacct
     1621 caaatgcaga agcaatcgac tcgtccactt tacgtgcaat gaccgacttg acttcatcat
     1681 tggtcattcc actaatgatt tggtcctcta aacctttatt gaaaaagata tccggtgaag
     1741 ctaaattatt ctcgcccggt aatgcatcaa aagcctcgaa gaaagactct aaataggtgc
     1801 tttgggaaga tttctgtagt tcgctcgcat cggccaaagc ttgattgaat gccgggtcct
     1861 tagtattatt ggctaagcct gcaagaatgt cttttacgga aacctgaaga atgacattaa
     1921 tccctccttt taggtccaat cccttattca acaccttgtc cttggctgta ttgtaatcga
     1981 taccaaaaaa ctgtggctcc gcggcaacag aatcaatgta tcgcaatact gcttgttgac
     2041 gctcatcaga ttgggttgca tcgtgacgct cattggcata aacttgagcg gcatcttcca
     2101 cttgatttgc gacaaatgta aatgacaatt ggtacaaact gaccaatccg aacagtatcg
     2161 caaagacggt tattaatcct ttattttgca ttctatgtgt atttagagta tttaaaaacg
     2221 agcaaatata gtttttcaaa aaggaaatgc caattatttt ggcccgaaaa aactgcaaaa
     2281 aaggccgcta aatgcggcct tttaatgaat ttaatattgg ctcaaattaa gccaataaat
     2341 cgttggtttt acggactcct tcagcactct cggcgagatg tgttcgctct ttttcatcaa
     2401 gatctaattc aacgattttt tcaattccat tacgtccaag aattacggga accccgatac
     2461 aaatatcatc aagtccatat tcgccagaca agagcgctga acagggcatc attttctttt
     2521 gatcgcaggc gatgctttga accaaagtag aaaccgcggc accaggagca taccaggcgg
     2581 acgttcctaa taatttagtt aaggtagcac caccaacttt agtggcctca cgaacctcat
     2641 caaggcgctc gatacttaaa aattcagaaa cgggcacact gcttcgtgtt gccaagcgcg
     2701 tcaatggaat cataccggta tcactgtgtc ccccgatgac cattccgtca atgtcacttg
     2761 agggcgcatc aagagcctca gccagacgat atttaaatcg agcgctgtcc agagcccctc
     2821 ccataccaat aatgcgattt ttaggcaatc ctgttacttt gtgggccaaa taggtcatcg
     2881 tatccatcgg attgcttacc accaccaaaa tcgtctcagg agattgctcg atcaatgccg
     2941 cagaaacatt ttggacaatc cctgcattaa tcccaatgag ctcctcacga gtcatccccg
     3001 gtttacgagg aataccggag gtaattacac aaatatcact tcctgccgtg gctcgataat
     3061 cattggtaac cccagtgatc tttgtatcaa aaccattgag tgtggctgtc tgcatcaaat
     3121 ccattgcttt accctcggca aatccttctt taatgtccaa aagaaccact tcacttgcga
     3181 aattctttat ggcgatatat tcagcacagc tcgcgcccac tgcacccgca cctacaacag
     3241 taattttcat tttttttgtc ttttaggtta ttatttggct tgttttattg ttacccctaa
     3301 gctgaaccct ttgaattggt cgcttaacgg cgtggcaaaa ttatcaataa taatatactt
     3361 aacctagcct aaatgccttg agttcaacag atataaatcc ctatcgcacg cttacagaaa
     3421 ttccagtgga gaaggtgttg tattcctgta tggtttagga ggcaaacaac ttaaatatgg
     3481 ccaaattcac gcgcattccg agtccaaagc gagggctatt cacatcggcc ttaaactgaa
     3541 gtggattcgt gatggtttca tttatttgtc ccaaaggaac tccatttcca tcctctaggt
     3601 cataagtcag cgtataatct ccattgagct ctaatcgact tcccccgcga ccgtatcccg
     3661 ctgaagcata aaattctaag atggcaaggc ttaccgatcc tatagcctga aaagatagag
     3721 tgttcaaggc aaatagccct tctccattga ccacagaaac atcatcaaga tcatcttcat
     3781 catctatttt ataagtcacc ttagtattac tgtaggccac tagggcacta agactaaacg
     3841 gagttacaga aagtccagga atgtattgag tcaaatcatg ctgaaggccc actccgtaca
     3901 taaaattttt gactttgtca ttaacgccaa tattgggtaa aaagcgaatt tttaaatcgg
     3961 tactcgtagg taatcctatc ccaaactgaa tcatgggggt tgcgacccct tttaatggga
     4021 aatcaggacc aattccaccg ggcatttgga attcagcgac cttaaacgtc ccgtctccca
     4081 caggcacacg tacgtcaaaa aaagtgccgt ctggatcatc accaaggacg gttgaaacac
     4141 tttcagtatc gcctacttgt gagcgcacaa aattgtactc cgaggcacgg aacagaaagt
     4201 ttttgtcatt gttaggcact aaggccatat tggcgccaac agtcacatcg aatcccagga
     4261 cactgtgggt tttaccagtg gtataccatc cttcattcat gctgtacacc aggcctttta
     4321 aggcaggttc gatatagtct tgggtaaggc gttcggcgtc ctgtgcagcc aaaagaatac
     4381 tttctagttc ttgagattgg gcaaaagggg cagtaaataa actacagaat aacagaagtc
     4441 gtttcataat cgattggggg gttaaactaa aaaatgtctt ggtcaagttc gattgagatc
     4501 tttatgagat ttcctatgaa tctttatctt aaaattataa aaaagcccgc aagaaatgcg
     4561 ggcttgtcct ataaattacg catcaatatt ggcgtaaaca gcgtttcgtt caatgaaatc
     4621 tcgacgcggt ggcacttcat ctcccatcag catggagaaa atacgatctg cttctgttcc
     4681 attgtcaata gtcacttgac gcagggtccg gaagtccgga ttcatggtgg tatcccatag
     4741 ctgctccgca ttcatctctc caagaccctt gtagcgctga atgccgacac cgccacccca
     4801 ttcctcactt agagcatcac gctccttgtc attccatgcg taagcctttt tggatccctt
     4861 tttgaccaga tacaaaggcg gcgtagcaat ataaacatgg ccacctttaa ttagcgcatg
     4921 catatagcgg aagaaaaaag tcaaaataag cgtcgaaatg tgacttccat cgacatcggc
     4981 atcacacata attacaattt tgtgatagcg cagtttctca aggttgagcg ctttagcatc
     5041 ttcttccgtt ccaatggtaa cccctagtgc cgtaaagatg tttttgattt cttcattttc
     5101 aaaaacctta tgctgcatgg ctttttccac gtttaagatc ttaccgcgca aaggtaaaat
     5161 ggcttgaaaa ttacgatcgc gtccttgctt agcggttccc cctgcagaat ccccctcgac
     5221 taaaaacacc tcacacttct gcggatcttg ttccgaacaa tcagaaagct tcccaggaag
     5281 tccagcgcca cccatcacgg ttttacgctg taccatttca cgagccttac gcgccgcatg
     5341 gcgtgcttgt gctgctaaaa tgactttttg aacaatagtc tttgcatcgt ttgggtgctc
     5401 ttctaagtaa ttttcgagca tctcggaaac cgcttgactc accgctgcgg ttacatcacg
     5461 gttgcctagt ttagttttag tctgaccctc aaactgtggt tcagcgacct taacagaaat
     5521 tatcgctgtg agcccttcgc ggaagtcatc cccagaaatt tcaaatttta atttatctaa
     5581 aaggcccgaa gcatcagcat atttcttgag ggttgtggtt aaaccacggc gaaacccaga
     5641 caaatgcgtt cccccttcgt gggtattgat gttgtttaca taggaatgca aattctcatt
     5701 aaaagaggtg ttgtagacca tggccacttc taccggaata t
//
LOCUS       DPUP01000080            4510 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2632,
            whole genome shotgun sequence.
ACCESSION   DPUP01000080 DPUP01000000
VERSION     DPUP01000080.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4510)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4510)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4510
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1024)
                     /locus_tag="DHV98_02660"
     CDS             complement(<1..1024)
                     /locus_tag="DHV98_02660"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00589.20,HMM:PF13495.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCK05276.1"
                     /translation="MKNIHVSFERRNIRGVDFLFLSFPYDFQVKEYVKRFPGMKWSQS
                     NRSFCVPFSHNLQNQLEAYLMRKDYIKVVFNNTLKTIDNAKISKNNKILPRDKEELMR
                     NFENYLLGKRYSTSTLKVYLMFVRNFLRFHNNVNPELLSAESVRLFVEWVVRQKCYSI
                     STHRQLVSALRHFAFFYPNCAIDPDVLERPQKQRKLPVVLSMEEVKHILQVTKNLKHK
                     VAFALLYSSGLRVGELLNLELRSFDFDRRMIYVQSGKGGKDRYVQLAESLIPMLKTYY
                     HSYGPRQYFLEGQKGGRYTASSIRAVLRQSCKLASITKPVTPHTLRHSYATHLMESGT
                     GIRYIQE"
     gene            complement(1105..1911)
                     /locus_tag="DHV98_02665"
     CDS             complement(1105..1911)
                     /locus_tag="DHV98_02665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020081550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone biosynthesis protein
                     PqqB"
                     /protein_id="HCK05277.1"
                     /translation="MQDGGRPHLGCQKSCCVAGSIPSDVDYRVVSLGLFDREHTKGXQ
                     WRTFSGIFPEMVLNTLGGIFLTHAHMGHYLGLSYLGKEAYNAKEIPVYAMPRMAEFLN
                     NNGPWSQLVNNHNIELRSMTHNDTLQLTSNISVVPLLVPHRDEYSETVGYQIIGPEKT
                     ALFIPDIDKWDRWNQSILALIKQVDYAFLDATFYDGQELKNRDMSSVPHPFIVESLEL
                     FERLEMSDRNKVYFIHFNHTNPVLNADSGAANRVKQAGFNIAKQGQHFVL"
     gene            complement(2138..3508)
                     /locus_tag="DHV98_02670"
     CDS             complement(2138..3508)
                     /locus_tag="DHV98_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010178665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HCK05278.1"
                     /translation="MAQKPSLPKGTRDFSPEVVAKRTYIINTLRRSFETFGFQPIETP
                     SFENSETLMGKYGEEGDRLIFKILNSGDFLAKADQSHLDQRDSAKLTGQISEKALRYD
                     LTVPFARYVVQHQNELNFPFKRYQIQPVWRADRPQKGRFREFYQCDADVVGSKSLWQE
                     VELIQLYDRAFDALGLKGVTVHLNNRKILSGIAEVIGAADQLIDFTVALDKLDKIGRE
                     KVEEEMRQKGISPLAIERLAPLFETYSSNAEQLAALEALLETSEVGLLGLSELRFVIK
                     ALEALPLNSALVKINLTLARGLNYYTGAIFEVSAPEGINLGSIGGGGRYDDLTGIFGL
                     KDMSGIGISFGLDRIYMVLEELNLFPDHVAASTQVLFINFGDNEALYATQAVSQLRDR
                     GIAAELYPDPAKMGKQMTYADKRGIPYVVLAGTDEINNQRYTLKNLSDGQQKSVTLQE
                     LVDILS"
     assembly_gap    3599..3651
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3671..>4510
                     /locus_tag="DHV98_02675"
     CDS             3671..>4510
                     /locus_tag="DHV98_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCK05279.1"
                     /translation="MLGLFKENILIALDSIKTQLLRTVLTIVIIGIGIWSLVGILSAV
                     DALEHSISGNFASMGANTFNLQRYAFATNARDGGERKKINPIIDYNQIRAFNERYDFP
                     GTQTSISFLGTGTAEVKYNNIKTDPEVSVFGVNEHYLANTGTKIDRGRAFNFFDIQNN
                     NHVCMVGADFLKKMFKDEDPINKTISIRGSKFKIIGLLASKGSSFGNNQDLRVLIPIQ
                     LARSIFTQPNINYTISVMVNQKETLKEAESAALVAFRNIRGLSPLEEDNFAIERSEDL
                     INRV"
BASE COUNT         1323 a         1003 c          871 g         1258 t
ORIGIN      
        1 gttcctggat ataacgtatc ccagtcccac tttccattaa atgggtagca taactatgcc
       61 ttagcgtatg aggtgtaacc ggcttcgtta tagatgctaa tttacaactt tgtcttaaaa
      121 ctgcacgaat actacttgcg gtataacgcc ctcccttttg gccctccaaa aaatactgtc
      181 ttgggccata agaatgataa taggttttta gcattggaat caaactttca gccaattgta
      241 cataacgatc cttaccaccc ttaccgcttt ggacatagat cattcgtcga tcgaaatcga
      301 atgaccgcaa ctccaaattt aaaagctccc caacccgcaa tccggaacta tacaataacg
      361 caaaggccac tttatgtttt agattcttgg tgacttgtaa aatatgtttt acctcctcca
      421 tactcaatac aacgggcagc tttcgctgct tttgcggtct ctccaaaaca tcgggatcaa
      481 tagcacagtt cggataaaaa aacgcaaaat gccttaaggc actcaccaac tgtctatgag
      541 tgcttatcga gtaacacttt tgtcgcacaa cccattcgac aaacagacgt acgctctcag
      601 cagacaataa ttcagggttt acattattat gaaaacgtag aaaattccga acaaacataa
      661 ggtaaacttt gagagtactg gtgctgtatc gctttccaag caggtaattt tcaaaattgc
      721 gcatcaattc ctctttatct ctgggtaaaa tcttattgtt tttagaaatt ttggcattat
      781 caatagtctt caaagtatta ttaaaaacaa cctttatgta atctttacgc ataagatagg
      841 cctctaattg attttgaaga ttatgactaa atggtacgca gaaactgcga ttggattgac
      901 tccatttcat accggggaac cgtttgacat attctttgac ttgaaagtcg taaggaaaac
      961 tgaggaaaag aaaatcaact ccgcgaatat ttcgccgctc aaaactgaca tgaatatttt
     1021 tcatgattta taattttcga ggggagctcg tataaaaata taaaaaataa tcaccgtcac
     1081 actttaatct aacccaaact attattaaag cacaaaatgc tgcccttgct ttgcgatatt
     1141 gaagcccgct tgctttacac ggtttgccgc cccactatcc gcattgagca cggggttagt
     1201 atggttaaag tggatgaaat agaccttgtt gcgatctgac atttcgaggc gttcaaataa
     1261 ttccaaactc tcgactataa atgggtgtgg cactgaactc atgtccctat ttttcagctc
     1321 ttgtccgtcg taaaaggtcg cgtctaaaaa tgcgtaatcc acttgcttta taagtgccaa
     1381 tatagactga ttccatcggt cccatttgtc aatatccggt ataaacaagg ccgtcttttc
     1441 gggaccaata atttgatacc ccacggtttc agagtattca tcacgatgcg ggaccaataa
     1501 gggaaccacc gatatatttg aagtcaactg cagggtatcg ttgtgcgtca tagaacgcaa
     1561 ttctatattg tgattgttta ccaattgact ccaaggacca ttgttattta aaaattcagc
     1621 cattctgggc atggcgtaca caggaatctc cttggcatta taagcctctt ttcctaaata
     1681 ggacaacccc aagtagtggc ccatgtgcgc atgggttaaa aaaataccgc cgagggtatt
     1741 cagcaccatc tcgggaaaaa ttccgctaaa tgtgcgccac tgagnncctt tggtatgttc
     1801 gcgatcaaaa agcccgagcg atacaacgcg ataatcaaca tcgctcggaa tagaacctgc
     1861 cacacaacaa cttttttgac aacccaaatg agggcgtccg ccgtcttgca tcaccccaag
     1921 tacagaaagg acaactttag cctttggatc aggggtttcc agtgtgtgtg cagaagactc
     1981 gagcgtctta ctaggagtat cctcggcttc ccgatcaata gttacatcag attgtcgtaa
     2041 atcagaaacg ccaacagtat tattacaagc cgaaaatagc cagaacaata aaaatccttt
     2101 gataaggttg cctctcatga aacagatgtt tagcggatta cgacaaaatg tcgactaact
     2161 cctgcaaagt cacagacttt tgctgaccgt cactcaggtt ttttaaggta taacgctggt
     2221 tatttatctc atcggttccg gccaaaacca cataggggat acctctttta tcagcataag
     2281 tcatttgctt gcccattttt gccgggtctg gataaagctc agcggcaatg cctcgatcgc
     2341 gtaattgact caccgcctga gtggcgtaaa gggcttcatt atcaccaaaa ttaatgaaca
     2401 gaacctgggt cgatgcggca acatggtccg gaaataggtt aagctcctcg agaaccatat
     2461 aaatacgatc tagaccaaat gaaatgccga ttccactcat gtcttttaga ccaaagatcc
     2521 ccgtcaaatc atcatagcgt ccgccgcctc cgatactgcc caagtttatc ccttcgggcg
     2581 cagaaacctc gaaaatagcc ccggtgtaat aattcagtcc acgcgccagg gtcaaattta
     2641 ttttaaccaa ggctgagttc aacggtaaag cttcgagggc tttaataaca aatctaagct
     2701 cggaaagccc gagaagtccc acctcagaag tttccagcaa ggcctctaag gctgccagtt
     2761 gttccgcatt gctcgaataa gtttcaaaaa gcggtgccaa gcgttcaatc gccagagggc
     2821 taatgccttt ttgacgcatt tcctcttcga ctttttcacg tccaatttta tcgagtttat
     2881 ctaaagccac agtaaagtca atgagctggt cagcggcacc aataacttcg gcgattcccg
     2941 agagtatttt gcgattgttt aagtgcacgg tcaccccctt gagcccgagg gcatcaaatg
     3001 cgcgatcata gagctgaata agttctactt cttgccaaag tgatttactc cccacgacat
     3061 cggcatcaca ctggtaaaat tcgcggaacc ttcctttttg cggacgatct gcacgccaaa
     3121 caggctgtat ttgataacgc ttaaacggaa aattaagctc attttggtgc tgcaccacat
     3181 aacgtgcaaa aggcacggtt aagtcatagc gcaatgcttt ttcagaaatt tgaccggtca
     3241 gttttgcact gtcgcgctga tctaaatgac tttgatcggc tttagccaaa aaatcaccac
     3301 tgtttaaaat tttaaagatc aaacgatccc cttcttcccc atacttgccc attaaggttt
     3361 ctgaattctc aaaactcggt gtttctatag gttgaaaacc aaaggtttca aaactcctgc
     3421 gcagcgtatt gatgatgtag gtccttttgg ccactacttc gggtgaaaaa tctctagttc
     3481 ctttgggtaa agacggtttt tgtgccactt tttctcagta tttccgtgaa atacaaatat
     3541 cttaaaatag atggatttct cgggttagaa taatagagaa ttccctcaat taataaagnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngaatcaatt
     3661 ttctcaatag atgcttggat tattcaaaga aaatattctc attgccttag actcgatcaa
     3721 aacccaattg ctcagaacag tactgaccat tgttattatc ggcatcggga tatggtcttt
     3781 agtgggaatc ttgagtgctg tagacgcttt ggaacattct atttcgggaa actttgcgag
     3841 catgggcgcc aataccttta atttgcagcg gtatgcgttt gccacgaacg cgcgcgatgg
     3901 cggggagcgc aaaaaaatca atcccattat cgactataat caaattcggg cctttaatga
     3961 gcgatacgat tttccgggca cccaaacctc tatttccttt ctaggcacag gaactgctga
     4021 agtaaaatac aataatatta aaacagaccc agaagtcagt gtttttgggg ttaatgagca
     4081 ttatttggcc aataccggca ccaaaataga tcgcgggcgg gcctttaatt tctttgatat
     4141 ccaaaacaat aatcacgtct gtatggtcgg cgcggatttc ctgaagaaaa tgtttaaaga
     4201 tgaagatccc attaataaga ccataagcat tcgcgggtca aaatttaaga ttatcggact
     4261 actggcttcc aagggctctt catttggaaa taatcaagat ctacgggtat taatcccaat
     4321 acaattggcc cgaagtattt ttactcagcc caacatcaat tataccatta gtgttatggt
     4381 caaccaaaag gaaaccctta aagaagcaga aagtgctgct ttagtggcct ttagaaatat
     4441 tcgagggctt tctcctttgg aagaagataa ttttgcaatt gaacgaagtg aagatctcat
     4501 caatcgcgtg
//
LOCUS       DPUP01000081            3013 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_37039,
            whole genome shotgun sequence.
ACCESSION   DPUP01000081 DPUP01000000
VERSION     DPUP01000081.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     assembly_gap    141..333
                     /estimated_length=193
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<334..725)
                     /locus_tag="DHV98_02680"
     CDS             complement(<334..725)
                     /locus_tag="DHV98_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612499.1"
                     /note="negatively supercoils closed circular
                     double-stranded DNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HCK05280.1"
                     /translation="MSEEVNKANYGADNIQALEGMEHVRMRPSMYIGDIGVRGLHHLV
                     YEVVDNSIDEALAGHCDTIDVAINEDNSISVKDNGRGIPVDLHKKEGVSALEVVMTKI
                     GAGGKFDKDSYKVSGGLHGVGVSCVNALS"
     gene            complement(718..927)
                     /locus_tag="DHV98_02685"
     CDS             complement(718..927)
                     /locus_tag="DHV98_02685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05281.1"
                     /translation="MRFENGPYLRAHGTSFRLRNFIGFTRFFFTKFVDNFRGQILRYP
                     LKSLGIWLYLTIHFSSRKKQPKIYE"
     gene            complement(956..1588)
                     /locus_tag="DHV98_02690"
     CDS             complement(956..1588)
                     /locus_tag="DHV98_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HCK05282.1"
                     /translation="MTKEEIASAVAVGAYLPLMEAFYTLQGEGYHKGAAAYFIRVGGC
                     DVGCHWCDVKESWNPDIHPPSAIDKIIEQAQHYAKTIVVTGGEPLMWPMEPLTQGLKR
                     AGLQTHIETSGAYPLSGQWDWICLSPKKNKLPLEEVYEKADELKVIVHNKHDFIFAEE
                     QARHVGKNCKLYLQPEWSQREKMMPLMVDYVMQNTHWILSLQTHKYLSIP"
     assembly_gap    1708..1775
                     /estimated_length=68
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1776..2317
                     /locus_tag="DHV98_02695"
     CDS             <1776..2317
                     /locus_tag="DHV98_02695"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05283.1"
                     /translation="LMKRLYFHAILALVFSACNDNSLIIDDTSVGPLMQTTRVFELPQ
                     LFPGDSLAGRRIKGDSLTGEVELYDAQGKMRMIIFPKDETDPKSELSYARIIDPKFTT
                     KNGIGAGSTFGTLKNNHEVDGLDNAINAVVVSFKDTPWYVTIDKKELPENIRYDYASK
                     IELAQIPDEAKIKYFFYTW"
     assembly_gap    2378..2562
                     /estimated_length=185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2563..3005)
                     /locus_tag="DHV98_02700"
     CDS             complement(<2563..3005)
                     /locus_tag="DHV98_02700"
                     /inference="COORDINATES: protein motif:HMM:TIGR02206"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02206 family membrane protein"
                     /protein_id="HCK05284.1"
                     /translation="MYEILVFWILAGTAQGVFTPDLDEGFPHYRFFKYWLEHAGLVLF
                     IIYVSAVYGMRPKFKSILKAFGAIQVYLIFILGVNASIGSNYLFLMRKPEHTSLLDVL
                     GEWPYYIFVEELLILPFFFGIYGVFKGVDALSDRFSAKHKVRVQQ"
BASE COUNT          774 a          608 c          482 g          703 t
ORIGIN      
        1 tcatcaggca aaaaagtcac catggtgcca cgctcagtgg tctccccaac ggtttttacc
       61 ggatatagcg cttttccgcg ctcatattct tgctcccaaa ttttaccctc tctataaacg
      121 gtcgctttga gtgagacggt nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngacaagg cattaacaca actcacccca
      361 acaccgtgta atccaccgga aactttgtac gaatccttgt caaatttacc acccgcaccg
      421 atcttggtca taacaacttc caaagcggaa actccctctt tcttgtgcaa atcaacagga
      481 atcccccggc cattatcctt aaccgatatt gaattgtctt cattgatggc tacatcaatc
      541 gtatcacaat gtcccgccag ggcctcatcg atggagttat ccaccacttc atagaccaag
      601 tgatgcaatc cgcgcacacc gatatctccg atatacatcg aagggcgcat acgcacgtgt
      661 tccataccct ctaacgcctg aatattgtcg gcgccataat tggccttgtt tacttcttca
      721 ctcataaatt ttaggttgtt ttttccgact agaaaaatgt attgtcaaat ataaccaaat
      781 acccagtgat ttcaatggat agcgcagaat ttgacccctg aagttatcaa caaattttgt
      841 gaaaaaaaac cgggtaaaac caataaaatt ccgcagccga aatgaagtgc cgtgggccct
      901 taaataaggc ccattttcaa aacgcattga aacatcgaaa gtttataaaa cgtcactaag
      961 gaatactgag atacttatga gtctgtaggg ataaaatcca atgcgtgttc tgcatgacat
     1021 aatccaccat aaggggcatc attttttcac gttgactcca ttctggttgc aaataaagct
     1081 tacagttttt gcccacgtga cgggcttgtt cttcagcaaa aataaaatcg tgtttgttgt
     1141 gcacgattac cttgagttca tcagcttttt cataaacctc ttccaagggt aatttattct
     1201 tttttggcga taaacagatc caatcccatt ggcccgatag aggataagcg ccagaagttt
     1261 ctatatgggt ttgcaatccc gctcttttca acccctgcgt cagtggttcc atgggccaca
     1321 tgaggggctc tcctcctgta acgactatcg tctttgcata atgctgcgct tgctcaatga
     1381 tcttatcgat ggctgaaggt ggatgaatgt cagggttcca actctctttt acatcgcacc
     1441 aatgacatcc gacatcacaa ccacccacac gaataaaata agcagcagcg cccttgtgat
     1501 agccttctcc ctgtagggta taaaaggctt ccattagggg taaataagcg ccaaccgcaa
     1561 cggcactggc aatctcttct ttggtcattt ccatgcggca aagataaaat taattgaagg
     1621 acaaaagcgc aaattattag aggatcacgc cactcatctc ccgaacatgt ttatttttga
     1681 caaaaatttt aaccccttat gaaacgannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnccctt atgaaacgac tttattttca
     1801 cgccatttta gcgctcgttt tcagtgcttg taacgacaat tcactgatta ttgatgacac
     1861 atccgtcggg ccattaatgc aaaccacaag ggtttttgaa ctccctcaat tatttcctgg
     1921 agattcattg gctggaagac gtattaaggg agatagtttg actggggagg tggaactata
     1981 cgacgcgcaa ggcaagatgc gcatgattat ttttcctaaa gacgaaactg atccgaaatc
     2041 tgaattatct tatgcccgaa ttattgatcc gaaatttaca accaaaaatg gaatcggcgc
     2101 cggcagtact tttggcacac ttaaaaataa ccatgaagta gatggcttag ataatgcaat
     2161 caacgccgtg gttgttagct ttaaagacac accgtggtat gttacgatcg ataaaaagga
     2221 gcttccagaa aatattcgtt atgactacgc cagtaaaata gaattggccc aaattcctga
     2281 tgaggccaaa atcaaatact ttttttacac ctggtagacc cccgcattaa ttagggccta
     2341 gagaggcttt gaaattgact gttgcactcg gaccttgnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntactgttg cactcggacc
     2581 ttgtgttttg cactgaaacg atcacttagc gcatcaacac ccttaaatac cccataaata
     2641 ccaaagaaaa agggtagtat taagagttct tcgacaaaaa tgtaataagg ccactctccc
     2701 aaaacatcca aaagagaggt gtgttctggc ttgcgcatta gaaataagta attcgacccg
     2761 attgaggcgt ttacccccag tataaatatc aaataaacct gtatcgcgcc aaaggccttt
     2821 aagatacttt taaattttgg gcgcatgccg tatacagcag acacgtaaat aataaataaa
     2881 accaatccgg cgtgttccag ccaatactta aaaaatcgat agtgtggaaa cccttcgtct
     2941 aaatccgggg taaacactcc ttgtgccgtt ccggccagaa tccaaaaaac caaaatctca
     3001 tacatccaat att
//
LOCUS       DPUP01000082            4826 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7511,
            whole genome shotgun sequence.
ACCESSION   DPUP01000082 DPUP01000000
VERSION     DPUP01000082.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4826)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4826)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4826
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..217)
                     /locus_tag="DHV98_02705"
     CDS             complement(<1..217)
                     /locus_tag="DHV98_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel protein"
                     /protein_id="HCK05285.1"
                     /translation="MKQFKSSKIQTAVFGFLLIFIGGVLGFKAFYEYTWVDALYMTVI
                     TITTVGFGEVHPMSASEKIYTSVLIVSS"
     gene            complement(214..435)
                     /locus_tag="DHV98_02710"
     CDS             complement(214..435)
                     /locus_tag="DHV98_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC family transcriptional regulator"
                     /protein_id="HCK05286.1"
                     /translation="MLKTLRYYLERHGFYVSARLADRLGMRAKTVRLSFIYVTFATLG
                     VGFAVYLVLAFWMKMKDLIFTKRSSVFDL"
     gene            complement(437..1417)
                     /locus_tag="DHV98_02715"
     CDS             complement(437..1417)
                     /locus_tag="DHV98_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-synthase"
                     /protein_id="HCK05287.1"
                     /translation="MNYANNILETIGNTPMVKINKLTASLPCLVLAKYETFNPGNSVK
                     DRMALKMIEDAEADGRLRPGGTIVEGTSVNTGMGLALAAIVKGYKMICVTTDKQSKEK
                     VDILRAVGSEVYVCPTDVAPEDPRSYYSTAARLGKETPNSWYVNQYDNPSNAQAHYES
                     TGPEIWKQTDGKITHFIVGVGTGGTISGVGRYLKEKNPEIKIWGIDTYGSVFKKYHET
                     GIFDQNEIYPYVTEGIGEDILPANVNFGIIDGFTKVTDKDAAVYTQKLAKEEGMFVGN
                     SAGAAIKGVLQLSEHFTQDDVVVVLFHDHGSRYVGKMYNPEWMKKMGYTE"
     gene            complement(1480..2529)
                     /locus_tag="DHV98_02720"
     CDS             complement(1480..2529)
                     /locus_tag="DHV98_02720"
                     /inference="COORDINATES: protein
                     motif:HMM:PF02687.19,HMM:PF12704.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transmembrane permease"
                     /protein_id="HCK05288.1"
                     /translation="MHLENQGQIEDLVPWQCTEETKALLSEVNGVGHIQGTAHKAGLI
                     LTEEDFEGIVLKGVGADYHWDRLSEFLIQGQFIDTEAVLNNQMIISETIAQRLGLTLG
                     ATLNTYFLDQQDTDKISPKTRARGFTVVGIYDSGFDDFDRQMVFVDLRHIQRLNRWDS
                     QEIGRLEVLAHDHADIDALTRELYDLAPVTVDAMSMYASFYNIFEWLSLFDFNIYLII
                     FIMILVATINMVTALIVLILERTRMIGIFQVMGAGNWRLQKIFLLQAAYIVLWGLFWG
                     NLLGLGCVWIQDAWQLIELDPKTYYVHSAPVSLPIEAWGLLNLSTFVLCLLFLLIPSY
                     LVAQISPVRALRFDG"
     gene            2689..3906
                     /locus_tag="DHV98_02725"
     CDS             2689..3906
                     /locus_tag="DHV98_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1343 domain-containing protein"
                     /protein_id="HCK05289.1"
                     /translation="MIWHVWTKNTLKIGLTLGLLMPFSCKSQAEQGSLRPIPAAQNLG
                     RYLPLLQGKQIGLVANQTSVVKNRDDESLGYTHLADTLQSLGIALKKVFAPEHGFRGT
                     ADAGAHISNGIDQNTGLQVISLYGVNKKPRVEDLVGIDLMIFDIQDVGVRFYTYISTL
                     HYVMEACAEQNIPLIVLDRPNPNAHYIDGPILKDGFNSFVGMHPVPVVYGMTIGEYAK
                     MINGESWLDGQVKTNLTVISVENYEHDTAYVLPIPPSPNLRSKQAIALYPSLCFFEGT
                     PISAGRGTDRPFEMFGAPYLNAERYPFEFRPIARQGAKWAKFKDEICHGLDLGQITPG
                     EHLELGWLIDMYNEAPDKEDFFNTFFDKLAGTDQLKKDIQAGLTKAEIYTSWVKELED
                     FKEIRAQYLIYPD"
     gene            complement(3941..4447)
                     /locus_tag="DHV98_02730"
     CDS             complement(3941..4447)
                     /locus_tag="DHV98_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc/iron-chelating domain-containing protein"
                     /protein_id="HCK05290.1"
                     /translation="MEQRIKALPALAKDKENAHKKFFSLLKRKPPKQLDRIMAELHER
                     EFEKTDCLACANCCKTTGPLFTEKDIVRIAKHLRMKPQAFTEQYLRIDEDRDRVLQEL
                     PCTFLGADNRCSIYEVRPKACREFPHTDRKKFQQITHLTLKNVAICPAAFNIVEDLRN
                     ALDSGRTT"
     assembly_gap    4496..4614
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4621..>4826
                     /locus_tag="DHV98_02735"
     CDS             4621..>4826
                     /locus_tag="DHV98_02735"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK05291.1"
                     /translation="MNVKKDLFGHALSQFYFKKDPAKLYSESNISHWDEYPLTHLFRG
                     FDQMPEIERQALSLAQGKILDVGCG"
BASE COUNT         1362 a         1090 c          953 g         1300 t
ORIGIN      
        1 tactcgatac aattaatacc gaggtataaa tcttttctga agcactcatg ggatgtactt
       61 ctccaaaccc aaccgtggta atagtgatta cggtcatgta caaggcatct acccaagtgt
      121 actcataaaa ggctttgaaa cccaagacac ccccaataaa aatgagtaaa aacccaaata
      181 cagccgtctg tatttttgaa cttttgaatt gtttcataaa tcgaagacag aacttctttt
      241 tgtgaagata agatctttca tcttcatcca aaaggccaaa actaaataaa ccgcaaatcc
      301 aacaccaagc gtagcgaaag tgacataaat aaaggataag cgaaccgtct ttgcgcgcat
      361 gcccaaacga tctgccaagc gcgcgcttac ataaaatcca tggcgctcta gataatatct
      421 tagggttttc agcatattat tcggtatagc ccattttttt catccattcg ggattataca
      481 tttttcccac gtaccgactt ccatggtcat ggaataagac gacaaccaca tcgtcttggg
      541 taaagtgctc cgataattgc aggactcctt tgatggctgc accggcagaa ttgcccacaa
      601 acatcccctc ttctttagct aacttttggg tataaactgc cgcatcttta tccgtaacct
      661 ttgtaaaacc atcgataatg ccaaaattga cattggccgg aagtatgtct tctccaatgc
      721 cctctgtaac gtaagggtag atctcgtttt gatcaaatat gcccgtttcg tgatatttct
      781 tgaacacact gccgtaagtg tctattcccc aaatcttgat ctcaggattt ttttctttga
      841 gatatcgtcc gacaccactt atggttcctc cggttcccac gcccacgata aaatgggtta
      901 tttttccatc ggtctgcttc catatttccg gaccagtgct ctcgtaatgc gcttgagcat
      961 tactcggatt atcatattgg ttgacatacc atgaatttgg tgtttctttc cccagtcttg
     1021 ctgctgtgct gtagtatgat ctggggtctt cgggagcaac atcggttgga caaacgtata
     1081 cttcactccc caccgctcgt aaaatgtcta ccttttcttt actctgctta tcggtggtca
     1141 cacaaatcat cttatagcct ttgactatgg cggccaaagc caatcccatt cccgtgttaa
     1201 cactcgtccc ctcaacaatt gtccctcctg gccttaagcg tccgtcggcc tcggcatctt
     1261 cgatcatttt aagtgccatg cgatccttta ccgaattgcc gggattaaat gtctcatatt
     1321 tggccaaaac caaacaaggc aaagatgcgg ttagtttatt aatttttacc attggggtgt
     1381 tcccaatggt ttccaaaata ttgtttgcgt agttcatcaa tgtagattcc tcaaatgatt
     1441 gagacaaaaa tacaaaacac agatggaacc cttttgaatt tatccatcaa agcgcaaagc
     1501 gcgtaccgga ctgatctggg ctactaaata ggacggaatc aataaaaaaa gcaaacacaa
     1561 aacaaaggtg cttaaattca gcaatcccca ggcttcaatg ggcagactta ccggggcact
     1621 gtgcacgtaa taggtcttcg gatcgagttc gattaattgc caagcatcct gaatccacac
     1681 acaccccaat cccaaaagat ttccccaaaa gagaccccaa agaacaatgt aagccgcttg
     1741 taacaaaaag attttttgta agcgccaatt ccctgcaccc ataacttgaa aaataccaat
     1801 cattcgcgtt cgctctaaaa tcaggacaat caaagcagtc accatattga tcgtggccac
     1861 taaaatcatg ataaaaatga tgagataaat attgaaatca aatagagaca accactcaaa
     1921 gatattataa aacgaggcgt acatactcat ggcgtctacc gtgaccggag ccaaatcata
     1981 aagctcacgg gtgagggcat cgatatcggc atggtcgtga gctaagacct ccaatcggcc
     2041 aatttcttgt gaatcccatc gatttaaacg ctgaatatga cgcaaatcga caaaaaccat
     2101 ttggcggtca aaatcatcaa aaccgctatc ataaatcccc acaacggtga atccacgggc
     2161 acgcgttttt ggacttattt tatcggtatc ctgttgatcg agaaaatagg tattcagtgt
     2221 cgcgccgagc gtcagcccta ggcgctgagc gatcgtttcg gaaatgatca tttggttgtt
     2281 taaaacagcc tccgtatcaa taaattgacc ttggattagg aattcagaaa ggcgatccca
     2341 atgataatct gccccaaccc ctttcaggac aattccttca aaatcttctt ctgttagaat
     2401 taatccggcc ttgtgcgctg tgccctgaat atgccctacc ccatttactt cagacaagag
     2461 cgctttggtt tcttcagtac attgccaagg cactaaatct tcaatttgtc cttgattttc
     2521 gagatgcact aaagttaccg caccattaaa tgattcgaac ttttgacgga tcttttgttg
     2581 cagaccaacc ccccnnggct attttaatta ttggggccga aacactacct ttattttttt
     2641 ctgaggaaag gatccgacga actgtaaacc attcaaaatt cacgcgtgat gatttggcat
     2701 gtttggacca aaaatacact aaaaattggg cttaccctcg gactattgat gcctttttca
     2761 tgcaaaagcc aagcagaaca gggctcgttg cgaccgattc cagcggctca aaacctaggc
     2821 cgatacctcc cactactcca aggcaaacag attgggcttg tggccaacca aacttcggtg
     2881 gttaaaaaca gggatgatga atctttaggt tatacgcacc tggccgatac gcttcaatcg
     2941 ctgggcattg cactgaaaaa agtttttgcc ccagaacacg gtttcagagg aacggccgac
     3001 gctggagcgc atatatccaa tggcattgat caaaatacgg gacttcaagt catttcactc
     3061 tatggcgtta acaaaaagcc acgtgttgaa gatttagtag ggatcgacct tatgattttt
     3121 gatatccaag atgtgggcgt acggttctat acctatatat cgacgctcca ttatgtcatg
     3181 gaggcctgtg cagaacagaa tattccactg attgttctgg accgtcctaa tcctaacgca
     3241 cattacattg atggacctat attaaaagat ggttttaata gcttcgtggg catgcatccc
     3301 gtgccggtag tttatggcat gaccatcggg gaatatgcca aaatgattaa cggagagtct
     3361 tggcttgacg gtcaagttaa aacgaattta accgtgattt cagtagaaaa ttatgagcat
     3421 gacaccgctt acgtgctgcc cattccccca tcccctaatt tgcggagtaa gcaagccatc
     3481 gccctttatc caagtttgtg tttttttgaa ggcaccccaa taagtgccgg aaggggcacg
     3541 gatcgtccat ttgaaatgtt tggagcaccc tatttaaatg ccgagcgcta cccttttgaa
     3601 tttcgtccca tagccagaca gggcgccaaa tgggccaaat tcaaggacga gatttgtcat
     3661 gggcttgacc ttggacaaat taccccgggg gaacatttgg aattagggtg gctcatcgac
     3721 atgtataatg aagcgccaga caaagaagat tttttcaata cctttttcga taaactcgcc
     3781 ggaacggatc aattaaaaaa agacatccaa gcaggattga ctaaagcgga aatttacacg
     3841 agctgggtaa aggagctcga agactttaag gaaattagag cccaatatct catatatcca
     3901 gattgatcgg gacgtgatga ccttatcaaa ataactcatt ctaggttgtc cgccctgaat
     3961 ctaatgcgtt acgcaagtcc tcaacaatat taaaagcggc agggcaaatc gcaacgtttt
     4021 tgagcgttag atgggtaatc tgttggaatt tttttcggtc cgtgtgtgga aactcgcgac
     4081 acgctttggg cctaacctcg taaatggaac accgattatc cgcaccgaga aaagtgcaag
     4141 gaagttcctg taataccctg tcgcgatctt cgtctatgcg caagtattgc tcggtaaagg
     4201 cctgaggttt catccgcaaa tgcttagcga tacgcacgat atctttttct gtaaacaagg
     4261 gcccagtagt cttacaacag ttggcgcagg caaggcaatc cgttttttcg aattcacgct
     4321 catgtaactc agccataatt cgatccagct gttttggggg ctttcttttg agtaagctaa
     4381 agaatttttt gtgcgcgttc tccttatctt tggccagtgc cggcaatgct ttaatacgct
     4441 gttccatgaa ctgtagattg attacaaatc taagcaataa tgaatgtaaa aaaagnnnnn
     4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngcaata
     4621 atgaatgtaa aaaaagacct ttttggtcat gcgctgagtc aattctattt taaaaaagac
     4681 ccagcgaaac tttatagcga aagcaatatc agtcattggg atgagtatcc cttgacccat
     4741 ttgtttcggg gctttgacca aatgcctgaa attgagcgcc aagcattatc cctggcacaa
     4801 gggaagatct tggacgtggg ttgtgg
//
LOCUS       DPUP01000083            4552 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9987,
            whole genome shotgun sequence.
ACCESSION   DPUP01000083 DPUP01000000
VERSION     DPUP01000083.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4552)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4552)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4552
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..192)
                     /locus_tag="DHV98_02740"
     CDS             complement(<1..192)
                     /locus_tag="DHV98_02740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit II"
                     /protein_id="HCK05292.1"
                     /translation="MTAFLVVLVIVLFGVALWQMAKIFELSKPKSDTSDEIANDQDNK
                     INGKLMLMFVLFIYVLAFIS"
     gene            complement(217..1707)
                     /locus_tag="DHV98_02745"
                     /pseudo
     CDS             complement(217..1707)
                     /locus_tag="DHV98_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012023715.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="quinol:cytochrome C oxidoreductase"
     assembly_gap    714..798
                     /estimated_length=85
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1730..2323)
                     /locus_tag="DHV98_02750"
     CDS             complement(1730..2323)
                     /locus_tag="DHV98_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HCK05293.1"
                     /translation="MKNTINFTIMTLAALIMTSCFDSAKPNYQYMPNMYRPVGYETYG
                     AYDVFPSGQEAMLPVDGTIPRGWEPYDYPNTTEGLNQAKATLKNPLAVSQESLDKGKA
                     MYDIYCAVCHGEKGDGQGILVKRKKILGIPSYADPGRLITEGGVYHVQMYGLNSMGSY
                     ASQTNQEERWAITQHVMNLKATLEGTPLLQPETEEKQ"
     gene            complement(2325..2861)
                     /locus_tag="DHV98_02755"
     CDS             complement(2325..2861)
                     /locus_tag="DHV98_02755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3341 domain-containing protein"
                     /protein_id="HCK05294.1"
                     /translation="MASKVIHALYNDDDILMNAVKTVRAEHYHIEEIYTPFPVHGLDK
                     AMGLEGTRIAITAFMYGVVGLTVAILMMNFIMIEDWPQDIGGKPSFSYLENMPAFVPI
                     MFEMTVFFAAHLMVITFYMRSKLWPFKKAENPDPRTTDDHFLMAIDAGHGDVDAMMKV
                     LESTGAVELNIVEQEQAH"
     gene            complement(2966..4090)
                     /locus_tag="DHV98_02760"
                     /pseudo
     CDS             complement(2966..4090)
                     /locus_tag="DHV98_02760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096466.1"
                     /note="too many ambiguous residues; incomplete; partial in
                     the middle of a contig; missing start and stop; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase"
     assembly_gap    3671..3749
                     /estimated_length=79
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4091..4297
                     /estimated_length=207
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4298..>4552)
                     /locus_tag="DHV98_02765"
     CDS             complement(<4298..>4552)
                     /locus_tag="DHV98_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002667263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin oxidoreductase"
                     /protein_id="HCK05295.1"
                     /translation="EAPIRRPLVTGDKTYHDVTVDVAAPVEGKANKSWWIVFTIALTA
                     FLWGLGCIIYTISTGIGVWGLNKTVNWAWDITNFVWWVGI"
BASE COUNT         1301 a          967 c          828 g         1085 t
ORIGIN      
        1 cgaaataaac gctaagacat aaatgaatag cacaaacatc aacatgagtt tgccattgat
       61 tttgttatcc tgatcgttgg cgatttcgtc tgaagtatct gactttggtt tagagagttc
      121 gaatattttg gccatttgcc aaagcgcaac accaaaaaga acgattacta atactactaa
      181 aaatgcggtc atcgtatgtc tactttatac gtttaattaa taatgaaaat gcttactctc
      241 cttaataaat ggattattct tcgggactaa tggcgccttt gttaatgtgg taaagacaac
      301 ataaacaaac aatccaaaga agaacattaa agcgcctatt tctggcacac caatggtcca
      361 actctctccc acagtagcag gcataaccat gttaaagacg tccaaatagt gtccggcaag
      421 aatcacaata ccagccataa ctacaaacca gttcacgcgc ttataatcac tattcatgag
      481 caacaataag gggaacacaa aattcatggc aatcattcca aagaatggca acttataatc
      541 ttcaattcgg gtcacaaaat acgttacctc ttctggaata ttcgcatacc aaatcagcat
      601 gaattgagag aaccataagt aggtccaaaa aatactaaag gcaaacatga acttggctaa
      661 gtcatgtatg tggctgtcgt taacctcttc gaggtaaccc tgagatttga ggtnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnncg tcactaacgc aatcacggta atggcacaaa ccatcatacc
      841 tgcaaaaaca taccaaccaa atagcgtgct gaaccagtgt gggtcaaaac tcataatcca
      901 gtcccaagac atgatggatt cggttacgat aaagaagacc aaaaaccctg ctgaaagttt
      961 aaaatttttc ttgaaaaaac tttgatcttc agcatgatca tcggccacag aatatttgcg
     1021 agagacccaa cggtaagcat tccatcctag caggaacacg atcgcccgaa ttaggaaaaa
     1081 aggaacattt aaataaccgc tctttccggc aataatttta tcgtaatggg cgctctcggg
     1141 attaacgagt tctggatcca tccaatggaa gatatggttt aagccaaagg ccgaagccat
     1201 gagcaacact aaaataccaa ttgaagcgac aggtaaataa ccggtaacgc cttccatgac
     1261 acgaaaaaga ataggagacc aacccgcctg tgcggcatat tgtatcgcat aaaaggccaa
     1321 tgcacccaaa gcgatcatga aaaagaaaaa cgatgcaata taaagcgctg accaaggacg
     1381 attttgcatt tgatgcatga cgtgctctag gtgctcttga tgtgggtctt gctcggcgtg
     1441 ggacgcctca tgacctgttg cttcttgatc atcctctgct gaagcatgca tctcagattc
     1501 atgttcttgg gcattgtggc ctgttgcatg accatccatg tcatgggttt gggcagcgtg
     1561 cccttcgcca tgatgggcct cagccatcat tgcagcaacc tcatctgtgg tctttggtgc
     1621 agacaaaaaa ccagcaacaa ttcctatggc tcctaaaacc ataaaaacca gtgcaaaaac
     1681 ttttaattta ttgggtagcg tatacatatc tattgcgatt ctctttgtcc tattgttttt
     1741 cttcagtttc aggctggagt aacggagttc cctcaagagt tgcctttaaa ttcataacgt
     1801 gttgggttat ggcccaacgc tcttcttggt tcgtttgtga ggcataagac cccattgagt
     1861 ttagtccata catttgaacg tggtaaacac caccctcagt aatcagacgc cctggatctg
     1921 cataactcgg tattcccaag attttttttc gtttcactaa aattccttgt ccatcaccct
     1981 tttctccatg acaaaccgcg cagtagatat catacatggc ttttcccttg tctaagctct
     2041 cctggcttac tgccaaagga ttcttaaggg tcgcctttgc ctgatttaaa ccttcggtgg
     2101 tattgggata atcgtaaggc tcccaacctc ttggtatggt cccatcaacg ggtaacatcg
     2161 cctcttggcc tgaagggaat acgtcataag caccataagt ctcataacct acaggacgat
     2221 acatattcgg catgtattga taatttggct tcgctgagtc aaaacacgag gtcatgatca
     2281 acgccgccag ggtcattatc gtgaaattaa tcgtattctt catattagtg ggcttgctct
     2341 tgttcaacta tatttaattc tacagcacct gtcgactcca aaactttcat catggcatct
     2401 acatcaccgt gacccgcatc aatcgccatc aaaaaatggt catctgttgt tcgcggatct
     2461 ggattttcag cttttttgaa tggccacagc ttactgcgca tataaaaagt gatcaccata
     2521 aggtgggctg caaaaaacac agtcatctca aacataatcg gaacaaaagc cggcatgttt
     2581 tctaaataac tgaaactcgg ttttcctccg atgtcttgag gccagtcttc aatcatgata
     2641 aaattcatca tcaaaattgc cacggttaaa ccaaccacac catacataaa tgcggtgatt
     2701 gcaatacgcg ttccctcaag ccccatggct ttatcgagtc cgtgaactgg gaatggagta
     2761 tatatttcct caatatgata gtgctctgca cgaacggtct tgacggcatt cattaaaatg
     2821 tcatcgtcgt tataaagcgc gtgaattact ttcgaggcca taattaacta tttttagaat
     2881 ttttgccttt gcctttaggc gcatcgggca tcacataatg tttggcgtca tctccttctt
     2941 tagagcgaag tgttttgtaa gtgcttccag aagttttcaa aattgattta acctctgctt
     3001 gtgcaatcac ggggaacgtt cgcgagtaca ataagaacag tacaaaaaag aatccaatgg
     3061 tccctatgaa aattccgata tccacgaagg ttggtgaaaa catcgtccat gatgacgtca
     3121 aataatcacg atgcaatgac gtcacaatga ttacaaaacg ttcaaaccac ataccgatat
     3181 tcacgacaat cgaaataaag aatgagaaca taatactggt gcgtaacttt ttgaaccaca
     3241 taaattgagg cgaaaagaca ttacaagtca tcatagacca atacgcccac cagtaaggtc
     3301 cagtggcacg attcaaaaag gcgtattgct cgtattcaac ccctgaatac caagcaataa
     3361 acaattctgt aatataggca acaccgacaa tcgatcccgt aatcataatt acgatattca
     3421 tgagttcgat gtgttgaatc gtaatatagt tttctagatg ggagacttta cgcatgatga
     3481 tcagcaaagt gttaaccatc gcaaatcctg agaaaatcgc ccccgccaca aaataaggag
     3541 ggaaaatcgt cgtatgccat ccggggatca ctgaagtcgc aaagtcaaaa gatacgattg
     3601 tgtgcaccga aagcaccaat ggtgttgcca aaccggcaag gaccagtgaa acttcttcaa
     3661 aacgctgcca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng taaatggggt gatcgctcgg tcgcgaatca
     3781 tggcaaaatc aggaagtaat cccgtccacc aaaatacaag tgacacagat aaataagtcg
     3841 aaattgcaaa tacgtcccag agcagtggtg agttaaagtt aacccaaagc gacccgaatt
     3901 ggttaggaat cggcaacacc caataagcca gccaagggcg acccatgtgg ataattggga
     3961 ataaaccggc ctggattacc gagaaaatag tcatcgcctc ggcagaacgg ttaatcgcca
     4021 tacgccactt ttgacggaac aacaatagaa ccgccgaaat caaagttcct gcgtgtccaa
     4081 taccaaccct nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncaa taccaaccca ccaaacgaag
     4321 ttggtgatgt cccatgccca gttaacggtc ttgttgagtc cccaaacacc tatcccagta
     4381 gagatggtgt agatgataca ccctagtccc cataaaaatg cggtaagagc gatggtaaag
     4441 actatccacc aagacttgtt ggccttgccc tccacaggag ccgccacatc gacagtaacg
     4501 tcgtggtagg tcttgtctcc cgtaactagg ggtcttctaa taggtgcttc gt
//
LOCUS       DPUP01000084           18500 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_351,
            whole genome shotgun sequence.
ACCESSION   DPUP01000084 DPUP01000000
VERSION     DPUP01000084.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 18500)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 18500)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18500
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1239
                     /locus_tag="DHV98_02770"
     CDS             <1..1239
                     /locus_tag="DHV98_02770"
                     /inference="COORDINATES: protein motif:HMM:PF14905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05296.1"
                     /translation="QEKEIQTNKLDGKIDYYRILNKTSHLNITLGTTLSFQNFDSKIF
                     ERINGTTDLLEETLPIDGQSSSLVNDVNYDFRDLFLGVHYKIKRGDFTFSPGLTLHQY
                     GLSNTQLGSTASQNQWLLLPDFFALWDIKNSENIRFNYSKTAEYTDINNLAQAYVFNN
                     YNRLFAGNRNLGNALSESFRLNYFSYNLFNYTNINGSLSYTKRTKGIKNNTTLVAINQ
                     VTQPENFDPDNPDHIYAASGRFSKRISKIEYRLNATLSYSELFSRVNEALQQSESFTQ
                     NYRLSARSSFSEWPNFEVGYNWTRNQYNNGRVDQLFFTQRPYFSLDVNFLKSFYWTVN
                     WDFYDYSNQENTIRNNYSFLNSTLYYQEQDSHWEFSLQGTNLTNNQATNTDSFTEQFN
                     STSQYIVLPRIIMFVVKYDL"
     gene            1348..2121
                     /locus_tag="DHV98_02775"
     CDS             1348..2121
                     /locus_tag="DHV98_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010521275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HCK05297.1"
                     /translation="MSDSINDKGHVLSHNLDGVKTIEFGHPAHNSLPSYLLDQLVQSI
                     DHASEDPEVKVVILRSHGERSFCAGASFQELIAIEDETQGLAFFSGFARVINAMRRCK
                     KFIIARVHGKAVGGGVGIIAAADYAVAVESAAVKLSELTIGIGPFVIAPAVARKIGVA
                     NLSALSIDAQGFRSARWGESKGLYTQVFDTVKAMDLGLDQLCSDLKQYNIEAMSAFKS
                     VLWSGTEHWEELLLERAALSGRLVLSPETKAQLASYKQS"
     gene            2189..3811
                     /locus_tag="DHV98_02780"
     CDS             2189..3811
                     /locus_tag="DHV98_02780"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05298.1"
                     /translation="MKQYFLAAVMLWTISLTAQWTTDTEINTLVSTLSSDDMKAVAAS
                     DGSTYIVFWHSVGAPENYELRLQVLNPQGEQMLGDEGVLVSDDLPMSTFTVLWNIVVD
                     QQDNLYIGATGTGGGDPAFVFKMDLQGNRLWGPTGISIGSGYAVKIFPLSQGNVLVSW
                     WPSTGIAQVQQYDASGQALWGAPSAVSLGSSDTVVGNMFELDNGEFIVIFHKVLSGIN
                     SFLYAQRFNISGAPVWTAPVQISDQATAFNRDYQGMMIQNRAYMGYYASSGTRFDTFL
                     QCLNPDGTIPWGINGASFDTTQAFYETNPYMAFKEGSGVVWMSSTYTNTSQSAKGTYL
                     QKFDLNSGERMFGDGAFELYPVGSESVPVGGMNIADQGPILLIKEGVDNGASPTALRA
                     TYLDDSGQSIWPEGLRDVATFQANKGRIHHTEMVNNQSVAVFVEQKSGSAKIYAQNIV
                     EGEVVLSQNDFDSAIDLLFINPFSQNLLSKATNPEIYRVEIYDAYGRRIIDITNTANL
                     ASYDVSQWASGLYYLRVSDQAQNEKIYRLLKE"
     gene            complement(3817..4350)
                     /locus_tag="DHV98_02785"
     CDS             complement(3817..4350)
                     /locus_tag="DHV98_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4136 domain-containing protein"
                     /protein_id="HCK05299.1"
                     /translation="MKMRLLLFSLSLVFMGCSSVRVAVDYDTAVSFDQYNTFAFYKPS
                     VDKMEVNDLDKKRILHAIDNNLTRKGLSKSQDAGLLVHVFTKEEKEVDIFQNNFGWGW
                     GWSPWWNGGFFGPSVSTRTEGQLYINLVDAQTNQLIWQGKGTAQLYPKDKVEKKQARI
                     QKIVDEILAQYPPGTQE"
     gene            complement(4415..>5970)
                     /locus_tag="DHV98_02790"
     CDS             complement(4415..>5970)
                     /locus_tag="DHV98_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HCK05300.1"
                     /translation="QMNDDQTLVMYSGHPMGLFPSGAHAPRVVVTNGMMIPNYSKPDH
                     WERFNALGVSQYGQMTAGSYMYIGPQGIVHGTTITVLNAFRKLGRSPRGGLFVTSGLG
                     GMSGAQPKAGNIAGCVTVCAEVNKKAIDTRHSQGWVDEVFDDLTELTQKVRSALQEKR
                     AISIAYHGNIVSLWEHFEKEQIKVDLGSDQTSLHNPWAGGYYPVSLNFEQANDMMANR
                     PDEFKIHVQKSLVRHAELINKHTERGAYFFDYGNAFLLEASRAGGDLLKQGSAEEFIY
                     PSYVQDIMGPMCFDYGFGPFRWVCASGDPKDLAKTDDIACRVLEELMTSAPDEIKQQM
                     ADNIQWIKGAQENALVVGSQARILYADSDGRIAIARAFNMAIAKGALGPVILGRDHHD
                     VSGTDSPFRETSNIYDGSRFTADMAIQNVIGDSFRGATWVSIHNGGGVGWGEVINGGF
                     GMILDGSQEAEKKLSSMLFWDVNNGIARRSWARNNEAIFAIKRAMQQEPNLKVTLPNI
                     VEDHLFEAQ"
     assembly_gap    5971..6158
                     /estimated_length=188
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6159..6586)
                     /locus_tag="DHV98_02795"
     CDS             complement(<6159..6586)
                     /locus_tag="DHV98_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016650351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HCK05301.1"
                     /translation="MTFQEEILLGIPDILPPLKAYVPEVNHAPKRKSILSPEEEQLAL
                     RNALRYFPAKHHKNLLPEFKQELHDHGRIYMYRLRPDQKIYARPIDDYPGQSLQAKAI
                     MLMIQNNLDHAVAQHPHELITYGGNGAVFQNWAQYRLDRK"
     gene            complement(6802..7098)
                     /locus_tag="DHV98_02800"
     CDS             complement(6802..7098)
                     /locus_tag="DHV98_02800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05302.1"
                     /translation="MIDPESSSYDYTQGWSYTHAYSAENDNEATAIESYNVPHFATLV
                     FYKPLIAGAPYTFNLRHKAVTGSAVFQNAGASGEGMGHIGHDIPCSVEFEFLGN"
     gene            complement(7228..7698)
                     /locus_tag="DHV98_02805"
     CDS             complement(7228..7698)
                     /locus_tag="DHV98_02805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05303.1"
                     /translation="MPHKTSSLFKSLGLVGLLTFLFSPIIQAQIGIGTTTPEGAIDVA
                     GNNSGLLFPRVSLQSMRDVTTVVNPNGGSLAAGTTVFNTNNSTTGRDDVQVGVYTFDG
                     TQWNPQFSREDYALYKQTSGCFRAPIRSGNLEYATASRIDGLINQVFTPKYSDM"
     gene            complement(7701..8528)
                     /locus_tag="DHV98_02810"
     CDS             complement(7701..8528)
                     /locus_tag="DHV98_02810"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05304.1"
                     /translation="MKFKNSLFAVLMILSQIPALGQIGIGTSNPEGLLDISMTQGFVY
                     PRVPLVNTSTATITTPDGNPPVTGTMVYNTKISGTDATAVYPGLYQWDGTHWVAQFDK
                     KDNKIYIQNRTLSTGHSVGPQGVSFDRKTFVPQYYGTYKIKVSLHFGAGKMDLNTSSE
                     PDDQHANFGAQGGDFVFNFNAQNHTVSMKSFSGNNNDTTLNGGTLKEYSNAYNQAQFT
                     ILETDLIPGESYDVGLTFEQLIANGFISDGALGTEGSGHVDMNGDLGCVIEISYINE"
     gene            complement(8532..>8715)
                     /locus_tag="DHV98_02815"
     CDS             complement(8532..>8715)
                     /locus_tag="DHV98_02815"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05305.1"
                     /translation="IWQEFTWTGFVSLQAGIGHMFNLSFTQNLSPEFENDGSGTGRGY
                     IAYDLPCRVEFIYMGE"
     assembly_gap    8716..8862
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8863..9475)
                     /locus_tag="DHV98_02820"
     CDS             complement(<8863..9475)
                     /locus_tag="DHV98_02820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05306.1"
                     /translation="MAFLLNVSTMTAQVGINTANPKAALDIESSNYGVVMPRLALTST
                     QNESPASNPQGGNIPAGTVIYNTATTNNGSNDVSPGLYVWTGTQWDPQFDRKEQVMFE
                     SVLGIRTEPLIGLLPTNIGGLNNQTFTPKYTGTYKVILSVNYGGGVAKQPNEAGSPAS
                     EGDLNIARQTGTFDFELDGVHRYIPVGAYSTNYANSVTIPTGGD"
     gene            complement(9504..9683)
                     /locus_tag="DHV98_02825"
     CDS             complement(9504..9683)
                     /locus_tag="DHV98_02825"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05307.1"
                     /translation="MGNLRSPKLIAIKIKMNLKKPKTPKLKLGQMLEYFAFHRNNLHF
                     IVIMSNFDLSISKTF"
     gene            9699..10643
                     /locus_tag="DHV98_02830"
     CDS             9699..10643
                     /locus_tag="DHV98_02830"
                     /inference="COORDINATES: protein motif:HMM:PF00291.23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate deaminase"
                     /protein_id="HCK05308.1"
                     /translation="MSRSHNTIIELDHWLGQKAKIDSIDLSPFKIDRGPLYLLREDRI
                     MDEASGNKLRKLLPNLKAALSAGINRIVTFGGAYSNHIAATAAAGQMFGFETIGLIRG
                     EELAQKINENPTLSQAHRIGMKLYFLNRSEYKRRSDPVYLDELRARFAPCLIIPEGGS
                     NDLAIEGVALMTRALPKKFRILCTPIGTGGTMAGVLNGAHLGRKVWGFSVLKGIDFRA
                     QMSRYGNDIPREFFDEYHFGGYAKANNELIDFINNFKAQTGIALDPVYTGKMMFGLID
                     LLRKNPSIKAQEILAIHTGGLQGVAGFNQSNKALLKIQ"
     gene            10664..11515
                     /locus_tag="DHV98_02835"
     CDS             10664..11515
                     /locus_tag="DHV98_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008865213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramidase"
                     /protein_id="HCK05309.1"
                     /translation="MNIKSSIGVIGFVGLLILSSCGTKKTIARKDRVKPAVKEHVSSS
                     SQQISQRSNTEPEVPMTAEQRMSLYVETFAPIAIDEMRLYGIPASITLAQGILESGSG
                     NGTLALKANNHFGIKCHTTWTGERVYHDDDELGECFRKYSDVKYSYRDHSLFLTQRSR
                     YADLFKLKISDYQGWAKGLKKAGYATDPKYPDKLISLIERFDLWQYDQGGALAQASSG
                     LEPQNASESINTRAINAKNRIYVVVPGDTLYSLSKRFGLTVDQIMEHNKLESIDLSIG
                     QELRLPK"
     gene            complement(11517..11852)
                     /locus_tag="DHV98_02840"
     CDS             complement(11517..11852)
                     /locus_tag="DHV98_02840"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05310.1"
                     /translation="MKTYLKALSTICLFFGLMTQPVFGQKLQQDNSRHDEAAKIQVDQ
                     MSQMLNLDGSQQRALFRALVSESTRSGQSPQILLGKAAQDQNEAFVQTLKSILTPDQF
                     RKWKNPNRK"
     gene            complement(11924..13627)
                     /gene="lysS"
                     /locus_tag="DHV98_02845"
     CDS             complement(11924..13627)
                     /gene="lysS"
                     /locus_tag="DHV98_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HCK05311.1"
                     /translation="MQRTELELIRLEKLNQLRALGIDPYPAAQFPVDHTAQEIKEHYQ
                     EGKRVVVAGRLMSRRIQGKASFAELQDSSGRIQVYFNRDEICPNEDKTLYNEVYKKLL
                     DIGDFIGIKGSLFTTQVGEKTIQVEEFTVLSKAIKPLPLPKTDSEGNIHDEFNDPELR
                     YRQRYADLVVNPHVKEVFIKRTRLFNAMRDFFNERGYFEVETPVLQSIPGGAAARPFI
                     THHNSLDIPLYLRIANELYLKRLIVGGFDGVYEFSKNFRNEGMDRTHNPEFTAMEIYV
                     AYKDYNWMMEFCEELLEYCALQVNGSTSAKFGDYDIDFKAPYPRVTMTDAIKKYAGID
                     ITGASEETLRTAAQALGIEVDETMGKGKLIDEIFGAKCEGQFIQPTFITDYPKEMSPL
                     TKSHRDQPELTERFELMVCGKEIANAYSELNDPIDQRERFEAQVKLADRGDDEAMYID
                     NDFLRALEYGMPPTSGMGIGMDRLIMFLTNNPSIQEVLFFPQMKPERSQIKVVLNEDE
                     QSLLNTLKSQGPMALSALKELSGLSNKKWDKSIKQLTKNKLAKVEKDDQGLWVLPADQ
                     D"
     gene            13713..13871
                     /locus_tag="DHV98_02850"
     CDS             13713..13871
                     /locus_tag="DHV98_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HCK05312.1"
                     /translation="MSFWRVLLSLLFPPLAVVDKGCGSFIIVCILTLCGWVPGVIAAL
                     IILNNPNR"
     gene            13873..14580
                     /locus_tag="DHV98_02855"
     CDS             13873..14580
                     /locus_tag="DHV98_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase"
                     /protein_id="HCK05313.1"
                     /translation="MHHNKLVLVEDLGLMDYAKAWAYQEDLFQAIVQTKIDNRRNSTQ
                     TTTQNHFLLVRHPHVYTLGKSGDMDNLLIDEQKLASIGAQFFKINRGGDITYHGPGQI
                     VGYPILDLENFFTDIHKYLRLLEEMIILTLADYGITADRSPGETGVWLDVGTPFARKI
                     CAMGVRASRWVTMHGFALNVNTDLGYFDHMIPCGIRGKSVTSMRVELKVTEVDEQAVS
                     QRLLYHFQTLFEAELSV"
     gene            complement(14620..15963)
                     /locus_tag="DHV98_02860"
     CDS             complement(14620..15963)
                     /locus_tag="DHV98_02860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05314.1"
                     /translation="MLNPIPLIFEDVPQMNHVFVWEDFLILTPSLDLAQEYISQLQNK
                     NLLAQSSAWQASEADMARESNLFSWTINPQNKQFERFQLIEDRGFAHVNYSMQAGDQK
                     VKNQRQGPLLRSITLDAPVATAPQFFSNHKSGGKNIVVQDTNHRLYFIAPSGKTIWFR
                     DLNEPILGEIQEVDILRNGKKQLAFTTTSKWYVIDRNGRDVGLFPKSFKDPITQPLAI
                     FDYDNNRKYRFLIIQKRSVLMYDAQGKRVKGFSYSKAPAAVSHPPKHIRIGTKDYLLF
                     LLENGQLQILNRTGKVRIPVTEQFDFGSELPVKHEGKIVFWTREGSQIQISPDGSVVK
                     LTAKSPAQYRLVYYGPHTIEFDDPLLRIDQHFIELPLGNYLGPQVFKFGNKLRTVMID
                     QDTQNIFVYHSEGRLVKNAPFFGRSTVDIADINGNDKLELVVQGQDNEVLIYNLN"
     gene            complement(16010..17011)
                     /locus_tag="DHV98_02865"
                     /pseudo
     CDS             complement(16010..17011)
                     /locus_tag="DHV98_02865"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    16029..16062
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(17102..17701)
                     /locus_tag="DHV98_02870"
     CDS             complement(17102..17701)
                     /locus_tag="DHV98_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010181297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HCK05315.1"
                     /translation="MLKLKINPNLLECGTDEAGRGCLAGPVTAAACILPDDFSHPLLN
                     DSKKLTESQRTELRTIIESSAIAWAVAHVTELEIDSMNILNASIEAMHRAILKLNPTP
                     EFIAVDGNRFKPLGQIPFQCVIKGDGKYQNIAAASVLAKTERDRYMKQLHLEYPKYDW
                     RQNKGYPTAKHRAAIAEFGDTPHHRKTFKLLPNQLRLNL"
     gene            17761..>18500
                     /locus_tag="DHV98_02875"
     CDS             17761..>18500
                     /locus_tag="DHV98_02875"
                     /inference="COORDINATES: protein motif:HMM:PF14121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05316.1"
                     /translation="MSRYLYLLILLSLSGNLLAQIPSGVPSKFRGQSDEKPEIRLYQR
                     IGLRGDTTALDTTLGLHKLKKFNYLRRDDLELLPFANVGQSHNKLSLQLPAFSFVPSF
                     AGGARRETQLNAADLNYYRVPTPLTELYFKTAFVQGQQLDAAFTTNVSEGLNISLAYK
                     GVRSLGQYQHILTSTGDFRGTVFYESPDKHYQLKAHLVNQELLNQENGGLTESALLLY
                     TTADPEFDDRGRLDVNFENAQNVIHSAG"
BASE COUNT         4966 a         3757 c         4053 g         5355 t
ORIGIN      
        1 caagaaaaag aaattcagac caataagctc gatggtaaaa tagattacta tcgtattttg
       61 aataaaacga gccacttgaa catcaccttg gggacgacac taagtttcca aaattttgat
      121 tctaagattt ttgagcgaat caatggcact acagacttgc tcgaagagac actgcctatt
      181 gatggacaaa gcagttcttt agtcaacgac gtcaattatg attttaggga cctatttttg
      241 ggagtacatt ataaaataaa gcggggggat tttacatttt ctccaggttt gaccttacat
      301 caatatgggc tttccaatac gcagctagga agtacggcga gtcaaaatca gtggttgctt
      361 ttgcctgatt tctttgccct ttgggacata aaaaacagtg aaaatatccg ctttaactac
      421 agtaaaactg cggaatacac cgacataaat aatctggcgc aggcctatgt gtttaataac
      481 tataaccgcc tttttgctgg aaacaggaat ttaggcaatg ccttatctga atcctttaga
      541 ttaaattatt tcagttataa tttgttcaac tacacaaata tcaatggatc gctgagttac
      601 accaagcgaa ctaagggcat taaaaataac accaccttgg tcgccattaa ccaggtgacc
      661 cagcctgaga attttgatcc cgacaatccg gaccatattt atgcggcttc tgggcgtttt
      721 agtaaacgaa tcagtaaaat agagtaccgc ctgaatgcca ccttgagcta tagcgaactt
      781 ttttctcgag tcaatgaggc ccttcagcaa agcgagagtt ttacccaaaa ttatcgccta
      841 agcgcgcgca gcagttttag tgaatggccc aattttgaag tgggctataa ttggaccaga
      901 aaccagtata ataatggtcg tgtggatcag ttatttttta cccaaagacc ctatttttcg
      961 cttgatgtga atttcttgaa atctttctat tggacagtga attgggattt ttatgactac
     1021 agcaatcaag aaaacacgat tcgaaacaat tattccttcc tcaatagcac gctttattat
     1081 caggagcaag acagccattg ggagttttcg cttcagggca caaacttgac caataaccag
     1141 gcgacaaata ccgacagttt taccgagcaa ttcaacagta caagtcaata catagtttta
     1201 cccagaatca taatgtttgt ggtaaaatat gacttataga atatgaggta ttttgaacgt
     1261 gcccatggtt tgaataaatc tctcgggcac tatttttagt atcttgcatc aacctaaccg
     1321 attttctaaa cgtcatactt tatgccgatg agtgattcaa tcaatgataa aggccatgta
     1381 cttagccaca atctcgatgg agtaaagacg attgagtttg gccatccagc ccataacagt
     1441 ttaccctcat acttattgga tcagctggtt cagagcattg atcatgcctc cgaggatcct
     1501 gaggtcaaag ttgtgatttt gcgcagccat ggggagcgca gtttttgcgc tggggcaagt
     1561 tttcaggagt tgattgctat agaagatgaa actcaaggac tcgctttttt tagcgggttt
     1621 gcacgagtca tcaatgccat gcgtcgctgt aaaaaattca ttattgcccg tgtacatgga
     1681 aaagccgtcg gtgggggcgt ggggataata gcggctgctg attacgccgt ggctgttgag
     1741 tctgctgcgg ttaaattgag cgaattgacc attggcattg gtccttttgt catcgcaccc
     1801 gccgttgctc gtaaaattgg tgtggctaat ttgagcgctt tgtccatcga tgcccaggga
     1861 tttagatctg cgcgttgggg tgaatcaaaa ggcctttaca ctcaggtctt tgatacggtc
     1921 aaagccatgg acttaggcct ggaccaacta tgcagtgatt taaaacaata taatatcgaa
     1981 gccatgagtg ctttcaagtc tgtactttgg tcaggaaccg agcattggga ggaattactt
     2041 ttagaacggg ctgccctgag cggacgtctc gtactgagcc ctgaaactaa agcgcaactt
     2101 gcgtcttaca aacaatctta aatcgaaata aaaccaattt caaataaaat ttgatgacta
     2161 atttgagtta ataatttacc ctattctgat gaagcaatat tttttagcgg ctgtgatgct
     2221 ttggaccatt tccttgacgg cgcaatggac cacggatact gaaattaata ctttggtctc
     2281 tactttatcg agtgacgaca tgaaggctgt tgcggcttca gatggctcaa cctacatcgt
     2341 tttttggcat agcgtaggcg ctccagagaa ctatgagtta agactgcagg tactcaatcc
     2401 acaaggagaa caaatgctcg gagatgaagg ggtgctggtc agtgatgatt tgcccatgag
     2461 tacgtttacg gtcctttgga atattgtagt ggatcaacaa gataatttgt acatcggtgc
     2521 aaccggtaca ggtggtggag acccagcctt tgtatttaag atggatcttc aagggaatcg
     2581 tttatgggga cccaccggaa tttcgattgg aagtgggtat gccgtgaaaa tatttcccct
     2641 atcccaaggc aatgttttag tctcctggtg gccttctaca gggatcgctc aagtccagca
     2701 atacgatgct tcagggcaag ccctatgggg cgcgccatcg gccgtatctc tcggttcaag
     2761 cgatactgtg gtgggcaata tgtttgaatt ggacaatgga gaatttattg tgatctttca
     2821 taaagtgcta agcgggatta attcgttctt atacgcccaa cgattcaata tatccggagc
     2881 tccagtttgg accgcccccg ttcagattag tgatcaggcc actgccttta accgagatta
     2941 tcaaggcatg atgattcaga atagggcgta tatgggttac tatgcctctt caggaacgcg
     3001 ttttgacacc tttttacaat gtctcaatcc agatggcacg ataccctggg ggattaatgg
     3061 cgcttctttt gacaccacac aggcgtttta tgaaaccaac ccgtatatgg cttttaaaga
     3121 gggttctggt gtcgtttgga tgagcagtac ctacaccaat acctcccaaa gtgctaaagg
     3181 aacttattta caaaagtttg atcttaattc aggagagcga atgtttggcg atggcgcctt
     3241 cgaattgtat cctgtgggtt ctgaatcagt tccggtagga ggaatgaata tcgcggatca
     3301 agggcctatc ctcttgatta aagagggcgt tgacaacggc gcttctccaa cagcgcttcg
     3361 cgcgacttat ctcgatgaca gtggtcaatc tatttggcct gaaggactga gagatgtggc
     3421 tacttttcaa gccaataagg gccgaattca tcacacagaa atggtgaaca atcagagtgt
     3481 ggctgttttt gtagagcaaa agtcagggag tgctaaaatt tatgcgcaaa atatagtcga
     3541 aggtgaagtc gtgctgagtc aaaatgattt tgattcagcg atagatttgc tatttatcaa
     3601 tccgttttca caaaacttgt tgagcaaagc cacgaatcct gaaatttacc gagtagaaat
     3661 ctatgatgct tatggtcgta gaattatcga tatcacaaac accgccaatc tggcctcata
     3721 tgatgtgagt caatgggcca gtgggcttta ttatttgcgc gttagtgatc aagcccagaa
     3781 tgaaaaaatt tatcgactgt taaaagaata actcagttat tcttgggttc caggaggata
     3841 ttgggctaaa atttcatcaa ctattttttg aatgcgggcc tgtttttttt cgactttatc
     3901 ctttggatag agttgcgcgg ttcccttgcc ttgccaaatc agttgattgg tttgggcatc
     3961 gactaaattg atgtagagct ggccttcagt gcgcgtactc acactcgggc caaagaatcc
     4021 gccattccac caaggagacc aaccccaacc ccagccgaag ttattttgaa aaatatctac
     4081 ttctttttct tctttggtga acacatgaac gagcagacct gcatcttgtg acttggagag
     4141 tccttttcgg gttaaattgt tatcaatggc gtgtaaaatt ctctttttat ctaaatcatt
     4201 aacctccatt ttgtcaacgg atggtttgta aaatgcaaag gtattatatt gatcgaaaga
     4261 aactgcggtg tcgtagtcca ctgcgacgcg aacggagcta catcccataa acacaaggct
     4321 taaactaaaa agcaataaac gcatcttcat aatattgggt ttaaaattat ttaacttatt
     4381 gttattgagt tagttaaatt aacaaattct gtacttattg agcttcaaaa aggtggtctt
     4441 ccacgatgtt gggcaacgtt acctttaggt taggctcttg ctgcatagcg cgttttatcg
     4501 caaaaatcgc ttcattattt ctggcccaac tccgtcgcgc aattccgtta ttgacatccc
     4561 agaaaagcat agaacttaat tttttttctg cctcctgact accatcaaga atcataccga
     4621 aaccaccgtt gattacttcg ccccagccga cgcctccacc gttgtggata ctgacccaag
     4681 tcgctcctct aaacgaatcg ccgattacgt tttgaatggc catgtcggcc gtaaatctgc
     4741 tgccgtcata gatgtttgag gtctctctaa atggggaatc tgtaccggac acatcatgat
     4801 gatcccgacc caaaatgaca gggccgagcg cacccttggc gatggccata ttaaaggcac
     4861 gcgctatggc gattcgtccg tcactatctg cgtatagaat gcgggcctgt gatcccacaa
     4921 ctaaggcatt ttcttgggcc ccttttatcc actgaatgtt gtccgccatt tgttgtttga
     4981 tttcatctgg cgcgctcgtc atgagttctt ctagtacacg gcaggcgata tcatctgttt
     5041 tggccaaatc tttgggatct ccagaggcac aaacccatcg aaatggacca aatccataat
     5101 cgaaacacat gggccccata atatcttgaa catagctcgg gtaaataaat tcctcagcgc
     5161 taccttgctt aagtaaatcc ccgcctgcgc gtgaggcctc gagtaaaaat gcattaccgt
     5221 aatcaaagaa ataagcacct ctttcagtat gcttattaat gagctcagcg tggcgtacta
     5281 gacttttttg aacatgtatt ttgaattcat ctggacggtt ggccatcatg tcattagcct
     5341 gttcaaaatt caaagaaaca ggataatacc ccccggccca aggattgtgc aacgaggttt
     5401 gatcacttcc taaatcaact ttgatttgct ccttttcaaa atgttcccaa agagaaacaa
     5461 tgttgccatg ataggcgatc gaaatggcac gcttttcttg caaagccgaa cgcacctttt
     5521 gggttaactc ggtcaaatca tcaaaaactt catccaccca cccttgactg tggcgcgtgt
     5581 cgattgcttt tttattgacc tcagcacaga cagtgacaca gccagcaata tttcctgctt
     5641 taggttgcgc cccgctcatc ccccctaaac cggaggttac aaataacccc ccccgcggtg
     5701 accggcctaa ttttctgaag gcgttaagca cggtaatggt ggtgccatgg acgatccctt
     5761 gaggccctat gtacatataa cttccggcgg tcatttgacc atattgagag acgcctaagg
     5821 cattaaatcg ctcccaatga tctggtttgg aataatttgg aatcatcatt ccattcgtga
     5881 ccacaactct aggcgcatgc gctcccgagg gaaaaagccc cataggatgg ccactgtaca
     5941 tcacaagcgt ttgatcgtca ttcatttgcg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnct cttccgatct agtcgatatt
     6181 gggcccaatt ctgaaaaacg gcaccattac ctccataagt aatgagttcg tgggggtgtt
     6241 gcgctacggc atgatccaaa ttattctgaa tcatcagcat gatggctttg gcttgaagac
     6301 tttggccagg ataatcgtca atgggtcgtg catagatctt ttgatcagga cgcaatcgat
     6361 acatgtaaat acgcccgtgg tcatggagct cctgtttaaa ctcgggaaga aggtttttgt
     6421 gatgtttcgc ggggaagtaa cgcagggcat tgcgcagcgc cagctgctct tcttcaggag
     6481 acaaaattga cttgcgtttt ggcgcgtgat tcacttctgg aacataggcc ttaaggggcg
     6541 gtaaaatatc aggaatgcct aaaagtattt cctcttgaaa agtcatggcg taaattttta
     6601 tggtttagga ttgcctttat acgggcaatg acgacaatta ctatcacagc aataaccacg
     6661 tttgaggtgg tattgcgcgg taaaacagcg atatccttcg ggagtcagat aaaagtctcc
     6721 ttcttccaca ggaatgtgtt tttttggaaa ttgcatgggt aaaaatacca catactcagg
     6781 caatctaaaa acctttttgg attagttgcc gagaaattcg aactcaacag agcaggggat
     6841 atcatgcccg atatggccca ttccctctcc cgaggcgccg gcattttgga aaactgcaga
     6901 acccgtaact gctttatgtc ttaagttaaa ggtgtagggc gctcctgcta ttaatggttt
     6961 atagaagact agtgtcgcaa aatgcgggac attataactc tctatggctg tggcttcatt
     7021 gtcgttctct gcggagtagg catgggtata ggaccagcct tgggtgtaat cgtaagatga
     7081 ggattctgga tcaatcataa tgcgcccgtt accttcaagt ttaaagaaaa aagccccttc
     7141 gcttgtggct agagaaataa agctttcatc ccccgtagtg aaatcttcta tttttccggc
     7201 gccaaaatta gttgttactt ctatgcgtta catgtcgcta tattttggag tgaacacttg
     7261 gttaattaag ccatcgattc gactggcagt ggcgtactcg agatttccgg atcgaattgg
     7321 tgctcgaaag catccgctgg tttgtttata taaagcatag tcctcacgac taaattgagg
     7381 gttccactga gttccgtcaa aggtgtaaac ccccacttga acatcatcac ggccggtagt
     7441 gctattattt gtattaaaga ctgttgtgcc tgcggcaaga ctcccgccgt tgggattgac
     7501 cacggtggtt acatcgcgca tgctttgaag agaaactcgt ggaaatagga gtccagaatt
     7561 attcccggcc acatcgatgg cgccctctgg ggtggtcgtg ccgatgccga tttgagcctg
     7621 aattattggg ctaaagagga aagttagtag gccgactagc ccaagacttt taaacaagga
     7681 tgaagttttg tgaggcataa ttattcgtta atataactta tttcaatcac acatcctaaa
     7741 tcaccattca tgtcaacatg accgctaccc tctgttccga gagccccatc agatatgaaa
     7801 ccgttggcga ttaattgctc aaaggtaagt ccaacatcgt aggattcacc tggaattaaa
     7861 tcagtttcta gaattgtgaa ttgggcttga ttataggcgt tgctgtattc ttttaaagtc
     7921 ccaccgttca atgtagtgtc attgttattt cctgagaaac ttttcatgga taccgtgtga
     7981 ttttgagcgt taaagttaaa gacaaaatct ccgccttgag caccaaaatt agcatgttga
     8041 tcatcgggtt cactcgatgt gttgagatcc atttttccag caccaaaatg aaggctcact
     8101 tttattttat aggtcccata gtactgaggg acaaaagttt ttctgtcaaa gcttacccct
     8161 tgcggtccaa cactgtgtcc agtgcttaga gttctatttt gaatatagat tttattgtct
     8221 tttttatcga attgagccac ccaatgagtg ccatcccatt ggtataaacc aggataaaca
     8281 gctgtggcat cggtgccgct gatttttgta ttgtaaacca tagtcccggt aacaggtgga
     8341 tttccgtccg gggtggttat tgtagctgtc gaggtattga ccagtggaac tcttggataa
     8401 acaaaaccct gagtcatgga gatatcaaga agtccttctg gattacttgt gccaatgcca
     8461 atctgaccta aagcaggaat ttggcttagg atcatcaaaa cagcaaatag ggaattcttg
     8521 aatttcatga cttattctcc catatagata aattccacac gacaaggcaa gtcataagcg
     8581 atatacccac gtcccgtccc agaaccatca ttttcaaatt ctggagaaag attttgtgtg
     8641 aatgataaat taaacatatg cccgatgcca gcttgtaacg aaacaaagcc agtccaggtg
     8701 aactcttgcc aaatgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngatctcct cccgttggaa
     8881 tagtgacact attggcgtaa ttggtcgagt aagcacccac ggggatatat cgatggactc
     8941 cgtccagttc aaagtcaaag gtgcctgttt gacgggcaat atttaaatca ccttcactgg
     9001 ctggagatcc agcttcattt ggttgtttgg caacaccccc gccatagttt acagagagta
     9061 taactttata ggttccggtg tacttagggg tgaaggtctg attattaagt ccgccgatat
     9121 tagtcggaag aagaccaata aggggttcgg tacgaattcc tagaacactt tcgaacatca
     9181 cttgttcttt tctgtcaaat tgagggtccc attgggttcc ggtccaaaca taaagtcctg
     9241 gtgaaacgtc gttactgccg ttattagtcg tagccgtatt atagataact gttccagctg
     9301 gaatattacc tccttgtgga tttgaggctg gactctcgtt ttgagttgag gtcagagcca
     9361 agcgcggcat gacgacgcca taattgctgc tttctatatc aagagcagct tttgggttag
     9421 ccgtattgat ccccacttgg gccgtcatag tcgacacatt gaggagaaaa gccatcggta
     9481 atatgtattt tattggagcc aaatcagaag gttttactta ttgacaggtc aaaattgctc
     9541 ataatgacga tgaaatgcaa attatttcga tgaaatgcaa aatactctaa catttgacct
     9601 aatttgagct ttggtgtttt cggctttttc aaattcattt taatttttat cgcaattagt
     9661 ttagggcttc ttagatttcc catttaattt tgaacctcat gagtcgctca cataatacga
     9721 tcatcgaatt ggatcattgg cttggtcaaa aagctaagat tgactcgata gatttatcgc
     9781 ccttcaaaat tgatcgaggt cctttgtatc tattacgaga agatcgaatt atggatgagg
     9841 cctcagggaa caaactcaga aaattactgc ctaatttaaa agcagccttg tcagcaggga
     9901 ttaatcgaat tgtaaccttc ggcggggcct attcaaatca cattgcggca actgcggcag
     9961 cgggtcaaat gtttggcttt gaaactatag gtttgattcg gggggaggaa ttagcgcaaa
    10021 aaattaatga aaatcccact ttaagtcagg ctcatagaat cggtatgaag ctttattttc
    10081 ttaaccgttc tgagtacaaa cggagatctg acccagttta tttagatgag ttaagagcgc
    10141 gttttgctcc ctgcttgatc attccagagg gcggcagtaa tgatttggcc atagaggggg
    10201 ttgcccttat gacccgtgcg ctgccaaaaa agtttcgcat actttgtacg ccaataggca
    10261 ctggagggac catggcaggg gtgcttaatg gagcgcattt ggggcggaaa gtctggggat
    10321 tttcggtctt aaagggaatt gactttaggg cacaaatgag tcgatacggc aatgatattc
    10381 ctcgtgaatt ttttgatgaa tatcattttg gaggttatgc caaagcaaat aatgaattga
    10441 ttgattttat taataatttt aaagcccaaa caggaattgc actagatccc gtttatacag
    10501 gcaaaatgat gtttggttta attgatcttc ttaggaaaaa tccctcgatc aaggctcagg
    10561 aaattttggc aattcacaca gggggtttgc agggcgttgc aggattcaat caatcgaata
    10621 aagcgttatt aaaaattcaa taaaggtcaa aaataaagag cttatgaata ttaaatcatc
    10681 aattggggta attggatttg tcggtctgct cattctttca tcatgtggca caaaaaaaac
    10741 catagcacga aaggatcgcg taaaaccagc tgtcaaagaa cacgtttcgt cttcttcaca
    10801 gcaaataagt caaaggtcaa atactgagcc tgaagtccca atgactgcgg aacagcgcat
    10861 gagcctgtat gttgaaactt ttgcgccaat tgccatcgat gaaatgcgtc tctatgggat
    10921 tccggcaagt attacgttgg ctcagggtat tttagaaagc ggatcaggta atggaacctt
    10981 ggcgctaaag gcaaacaatc attttggaat aaaatgtcat acgacttgga caggagagcg
    11041 cgtatatcac gatgatgacg aacttgggga gtgttttaga aagtatagcg atgttaaata
    11101 ttcttataga gatcactcac ttttcttgac gcaacgttcg cgctatgcgg atttatttaa
    11161 actcaagatc tcagattatc aaggatgggc caaaggatta aaaaaggcag gttatgccac
    11221 agatcccaaa tatccagata aactgatcag tctcatcgaa cgcttcgact tatggcaata
    11281 cgaccagggg ggggcattgg cacaagcatc gagtggcttg gagcctcaaa acgcaagcga
    11341 atcaataaat acgcgcgcga ttaatgctaa aaataggata tatgtggtgg ttccaggaga
    11401 tacgctttac agtctgtcaa agcgttttgg ccttactgta gatcaaatta tggaacacaa
    11461 taaacttgaa tcaatcgatt tgtccattgg acaagaattg cgccttccga aataaactat
    11521 ttcctatttg gatttttcca tttacggaat tgatctgggg tcaaaattga cttgagtgtt
    11581 tgaacaaaag cttcgttttg atcttgcgcg gcttttccca gcagaatttg tgggctttgc
    11641 ccagaacgcg ttgattcaga aactaaagca cgaaataaag cgcgctgctg agatccgtct
    11701 aaattaagca tttgggacat ttgatccact tgaatcttgg cggcttcatc gtgacgacta
    11761 ttgtcttgtt gtagtttttg tccaaatacg ggttgggtca ttagtccaaa aaacagacaa
    11821 attgtactta aggcttttag ataggttttc atagaatcac tcaattaata aagctaatct
    11881 acacaatatt ttcttaccat cctatgcaaa aagaatctgg gcgctaatcc tggtcggccg
    11941 gaagcaccca aagtccttgg tcgtcttttt caactttggc caatttgttt ttggtcaatt
    12001 gtttgatgga tttatcccat tttttattgc tcaatccact tagttcttta agtgcggaaa
    12061 gggccatagg gccttgactt tttagtgtat taagcaggga ttgctcgtcc tcattcaaca
    12121 ccacctttat ttgactgcgc tcaggcttca tttgtgggaa aaataaaact tcctggatcg
    12181 aaggattgtt ggtcaaaaac ataatgagcc gatccatacc aatccccatc ccagaggttg
    12241 gaggcatacc atattctaag gcacggagaa aatcattatc gatgtacatc gcttcatcat
    12301 cgccgcggtc cgctaatttt acttgagcct caaagcgctc tctttgatca attgggtcgt
    12361 ttaactcact atacgcattt gctatttctt taccacaaac catgagttca aatcgttccg
    12421 tgagttctgg ttgatcacgg tgacttttgg tcaatggact catttctttt gggtagtccg
    12481 tgataaaggt tggctgtatg aactgacctt cacatttcgc cccgaagatt tcatcaatga
    12541 gtttaccctt gcccatagtt tcatcgactt caattccgag tgcttgagcg gccgttctca
    12601 gggtctcttc agaggcaccg gtaatgtcaa tgccagcgta tttttttatg gcatcggtca
    12661 tggtaaccct tgggtaaggg gctttaaaat cgatatcata atcgccaaac ttagccgagg
    12721 tgctgccatt gacttgtagc gcacagtatt ctaatagttc ctcacagaat tccatcatcc
    12781 aattatagtc cttgtaggcg acataaatct ccatggcggt aaattctgga ttgtgggtgc
    12841 gatccatacc ctcattgcgg aagttttttg aaaattcata aaccccgtca aaaccgccga
    12901 cgataagtct cttgaggtat aactcatttg caatgcgcaa ataaaggggg atgtctagac
    12961 tgttgtgatg ggttataaaa ggacgtgccg ctgcacctcc cggaatagat tgtaggactg
    13021 gagtttctac ttcaaagtat ccgcgttcat taaaaaaatc acgcatggca ttaaataaac
    13081 gtgttctttt aataaagact tccttaacat gaggattaac gactaaatct gcatagcgct
    13141 gacgatatcg aagctcagga tcgttaaatt cgtcgtggat atttccttca ctgtctgttt
    13201 ttggaagggg taatggctta atggctttgg aaagcacagt aaactcctct acttgaattg
    13261 tcttttcccc gacttgtgtg gtaaataaac ttcctttgat gccgatgaaa tccccaatat
    13321 caaggagttt tttgtaaacc tcattgtaaa gcgtcttatc ttcattagga caaatttcgt
    13381 ctcggttaaa atagacctgt attcttccac ttgagtcttg gagctcggca aaagaggctt
    13441 tcccttggat tcttcgtgac atcaatcgtc cggcgaccac tacgcgttta ccctcttgat
    13501 aatgctcttt aatttcctgt gccgtatggt ctacaggaaa ttgcgctgca ggataaggat
    13561 caatacccaa agcgcgtaat tggttgagtt tttcaagacg aataagttcg agttctgtgc
    13621 gttgcatgat gtcaaaatat gctgcaaaaa taattaatta ttcgcggttt gggtggtgga
    13681 gtggtattga aaatatcccg tatttttgtg gtatgagttt ttggcgtgtc ttactctcgt
    13741 tattatttcc tcctttggcg gtcgtggaca agggctgtgg ctcctttatt attgtctgta
    13801 ttttgacgct ttgtggatgg gtcccgggag tgattgcagc cctcattatt ctcaataatc
    13861 ctaatcgata gtatgcacca taataaattg gttttggttg aagatctagg cctgatggat
    13921 tatgccaagg catgggctta tcaggaggac ctctttcagg caattgtcca aacaaaaatt
    13981 gacaatcgaa gaaatagtac acaaaccact acgcaaaatc actttcttct ggtgcgccac
    14041 ccccatgtct atacccttgg taaaagtgga gatatggaca atcttcttat tgatgagcaa
    14101 aaattagcct caattggcgc acaatttttt aaaattaatc gaggcgggga tattacttac
    14161 cacggtccgg gtcaaatagt gggctatccc attttggacc tggaaaattt tttcacagac
    14221 attcacaagt acttgcggct tttggaagag atgattattc ttactttggc tgattatgga
    14281 atcaccgcag atcgctcccc aggagaaaca ggggtttggt tggatgttgg gactccgttt
    14341 gcgcgtaaaa tttgtgccat gggcgttaga gcgagtcgtt gggtcaccat gcatgggttt
    14401 gcccttaatg tcaatactga tctcggctat tttgatcata tgatcccttg tggaatacgc
    14461 ggtaaatcag tgacttcgat gcgggttgaa ctcaaagtga cggaagtcga tgagcaggcc
    14521 gttagccaaa gattgcttta ccattttcaa accctttttg aggcggaact tagcgtctaa
    14581 taaccggtcc tcaatctaat gcaatccgct ggcctagact taatttaagt tgtaaatcaa
    14641 cacttcatta tcttgaccct ggaccacgag ttcgagcttg tcattgccat ttatatctgc
    14701 aatgtcgacc gttgaccgac caaagaatgg tgcgtttttt acaagtctac cctcactgtg
    14761 gtacacaaag atgttttgcg tgtcttggtc gatcatgacc gttcgcaatt tattgccgaa
    14821 tttaaagact tgaggcccca agtaattgcc caagggtagt tcgataaagt gttggtcgat
    14881 acgcaataat gggtcgtcaa actcaatcgt atgcgggccg taatagacca ggcggtattg
    14941 cgccggtgat ttagcggtaa gttttacaac ggagccatcc ggactaattt gtatctgact
    15001 gccttctcgg gtccaaaaaa caatctttcc ctcgtgctta accggtaatt cggaaccaaa
    15061 gtcaaattgt tccgttacgg ggatccgtac ttttcctgtg cgatttaaga tttgaagctg
    15121 tccgttttcg agtaaaaaca aaagataatc tttggtccct attctaatgt gttttggagg
    15181 gtggcttact gcagcgggtg ctttgctgta ggaaaatcct ttgacccgct tgccctgagc
    15241 gtcatacatt aatactgagc gtttctgaat aatcaaaaaa cgatatttcc gattattatc
    15301 gtagtcaaaa atcgccagtg gttgcgtaat ggggtcttta aagcttttgg ggaataaacc
    15361 aacatcacga ccattgcgat caatgacata ccattttgaa gtcgttgtaa aagcgagttg
    15421 ttttttgcca ttacgcaaaa tatcgacttc ttgaatctca cccagtatgg gctcgtttaa
    15481 gtctcgaaac caaatcgtct taccgctagg ggcaataaaa tagagacgat gattagtatc
    15541 ttgaacgact atgtttttcc ctcctgattt gtggttgctg aaaaattgtg gtgccgtggc
    15601 cacaggggcg tccagagtga tgcttctcaa gaggggacct tgcctttgat ttttgacttt
    15661 ttggtctccg gcttgcattg aataattcac atgggcgaac ccgcgatctt ctatgagctg
    15721 aaaacgctca aattgcttgt tttgagggtt gatagtccat gaaaataaat tgctttcacg
    15781 agccatatct gcttcgctcg cctgccaagc actgctttgc gctaatagat tcttattttg
    15841 caattggctg atgtattctt gagccaaatc aagactgggg gtcaggatta aaaagtcttc
    15901 ccaaacaaat acgtgattca tttgaggaac gtcttcaaag atgagcggaa tgggatttaa
    15961 catagtcgat tggggctcaa aggattttac agaaacccct ctaaaattat catcgccacc
    16021 ccaattttnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncccaattt tgtgtcagcg
    16081 cactcagact catattcaag tctagacttt taagcgctag tgcttgagcg ttagcgaatt
    16141 ttattaagct gacctcatct atggtctcga taaagggact aaggacaagc agggaatcca
    16201 cggcttgcat tctcaataaa agagattgcg gattatttaa cgctaagctt aagcttgaag
    16261 tagcgttaag gggcactatt tccgggctcc tcagaatact cggtttttga cctaagtcgt
    16321 aagtggaaag agtcggtttt tctcccgata aaccattgct ttttgaggga agaagcacac
    16381 catgggcaga ttggtcttca gaaccggact ggggctcaaa aatgatccaa gcatcctgtt
    16441 gaagagagat tttgctcaat gtggtatcaa atctctgccc aatcaataac ggtttgtctt
    16501 tttttaacgc gaacattttg gaaagagaat ttgggggggc tttccgtgga ttttgatctt
    16561 tatgatcgat tgattttttg ttggtaaata atgaatattg attttttgaa aatacaaatg
    16621 ccgtgtccac gccaataaca atttctttgg ctaggctcga gcgaatagaa tccgttaagg
    16681 tcaaaactaa aacataatct aatggggcac tgtggcccag tgcggcattt tgtcccggat
    16741 cattaataaa gagaagattg ccttgctcag acttaaatcg acgcaccaaa ctgtccaaaa
    16801 tcgggggtaa tttgggtcgt gaaaaaatag ccatagtatt ttgggattct cccaggtttt
    16861 ggaggacgat gggcgtgttg ttgaacgaca ggatatgggt ggtttcagag tcgatcaatt
    16921 gccatgggac aaagctgctt tgctgattgt cattgcatcc aatcaggctg aaaaaaaaca
    16981 aaaggtagag gtaaacaagg gctttttgca tatacaaaaa tagaaaggat cgattaattg
    17041 tcaatgcctt aattgagatt cagtttcgta tttgggatca aatgagttca aacctcctgt
    17101 attatagatt cagtcttaac tgattgggga gtaacttaaa ggtttttcta tgatgcggtg
    17161 tatccccgaa ttcagcgatt gccgcgcgat gctttgcagt gggataacct ttattttggc
    17221 gccaatcgta tttcgggtat tctaaatgaa gctgcttcat gtatcgatcg cgctctgttt
    17281 ttgccaaaac ggatgccgcc gcgatgtttt ggtattttcc atctcctttt atcacgcatt
    17341 gaaaggggat ctgccccaga ggtttaaatc ggttgccatc tacagcgata aattcagggg
    17401 tgggattgag ttttaaaatg gcgcggtgca tggcctcaat ggaggcattt agaatattca
    17461 tcgaatcgat ctctaattca gtgacgtggg ccaccgccca tgcgatggct gaagattcga
    17521 taattgtacg caattcggtg cgctgtgatt cggtgagttt tttagagtca ttcagtaagg
    17581 gatgcgaaaa atcgtcgggc aaaatacaag ccgctgcagt aactggaccg gccaagcacc
    17641 cccttccagc ctcatcggtg ccacattcca aaagattggg attgatcttg agtttgagca
    17701 tgcaaggaaa gtactcaatt ccttttaaaa taccgtaact ttaccccgca aaataaaccc
    17761 atgagtcgat atttatatct gctgattctg cttagtttat cgggaaatct cctcgcgcaa
    17821 atcccctctg gtgtgccgag taaattccga ggtcagagtg atgaaaagcc tgaaataaga
    17881 ctttatcagc gcattggctt gcgcggagat acgaccgctt tagacacgac cttgggtttg
    17941 cataaactca aaaagttcaa ttatctgcgc agagatgatc tagagctttt accatttgcc
    18001 aatgttggcc aatcgcacaa taaattgagc ttgcagctgc cggctttttc atttgtcccg
    18061 agttttgctg ggggggcgag acgggaaact cagttaaacg cagcagacct taattattat
    18121 cgagtgccca caccactgac tgagttatat tttaagacgg cctttgttca aggacagcaa
    18181 ctcgatgcgg ctttcacaac aaatgtctct gaggggttga atatttcttt ggcctacaaa
    18241 ggcgtgcgct ccttggggca atatcaacat atcttgacca gtaccggtga ttttcgagga
    18301 actgtatttt atgaatcccc ggacaagcat tatcagctca aggcccactt ggtaaatcaa
    18361 gaattgctca atcaagaaaa tggcgggctg accgaatcgg ctttgctctt atatacgacg
    18421 gctgatcccg aattcgacga ccgtggacgc ttggatgtaa attttgaaaa tgcccaaaat
    18481 gtgattcata gcgcgggtta
//
LOCUS       DPUP01000085            4755 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_21462,
            whole genome shotgun sequence.
ACCESSION   DPUP01000085 DPUP01000000
VERSION     DPUP01000085.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4755)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..826)
                     /gene="accD"
                     /locus_tag="DHV98_02880"
     CDS             complement(<1..826)
                     /gene="accD"
                     /locus_tag="DHV98_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HCK05317.1"
                     /translation="MAWFKRTTKGIQTPTELKKDVPKGLWYKSPTGKIVDADELARNF
                     YVSPEDGYHVRVGSKEYFEILFDDNKFKELDKDLRSKDTLKFQDTKKYTDRLKEAEKK
                     TNLKDAVRTAVGRSMGEDLVVACMDFGFIGGSMGSVVGEKIARAADYALKNKTPLLII
                     SKSGGARMMEAALSLMQLAKTSAKLAQLADAKIPYISLCTDPTTGGTTASFAMLGDIN
                     ISEPGALIGFAGPRVVRDTTGKELPEGFQTAEFLLEHGFLDFISHRKDLKKNINRYL"
     gene            complement(843..1910)
                     /locus_tag="DHV98_02885"
     CDS             complement(843..1910)
                     /locus_tag="DHV98_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017498372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HCK05318.1"
                     /translation="MSHSIKPGVASGQEVQAIFQHAKSKQYAMPAVNVVGSNTINTVL
                     ETAREVNAPVIIQFSNGGAQFNAGKGLSNEGQRAAIAGSIAGAHHIHALAQAYQTPVI
                     LHTDHCAKNLLPWIDGLISASETHYARTGRTLFSSHMIDLSEEPLEENIEICKHYLER
                     MSKIGMTLEIELGITGGEEDGVDNSDVDSSKLYTQPEEVAYAYEQLMQVSDQFTVAAA
                     FGNVHGVYKPGNVKLTPKILKNSQTYIQEKFGTGTNPIDFVFHGGSGSTLDEIRESIG
                     YGVVKMNIDTDLQFAFTEGIRDYMVGQYEYLKTQIGNPDGGDLPNKKYYDPRKWLREG
                     EVTFKARLKKAFEDLNNIDTL"
     gene            complement(1957..>2609)
                     /locus_tag="DHV98_02890"
     CDS             complement(1957..>2609)
                     /locus_tag="DHV98_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05319.1"
                     /translation="WKAELAGSLLSGLSQLSGSTDALGRREFFGVAFSQYAKLELDYI
                     RHWDLGSQNVMAFRGFGGWALPFGNSSSIPFTRSYFAGGANDIRGWRAYDLGPGSSGS
                     NLDFNEANFKLSVNLEYRFPIFGGFKGAFFADVGNIWNFKDDVLDPAFQFNGLEDLKE
                     LAVASGLGLRYDFGFFVIRFETGFKTHNPARPANDRWFKEYNFANAVYNIGINYPF"
     assembly_gap    2610..2717
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2718..>4122)
                     /locus_tag="DHV98_02895"
     CDS             complement(<2718..>4122)
                     /locus_tag="DHV98_02895"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05320.1"
                     /translation="VKKNRGSLQYSLTPNQPYSIGDLTYKIESPEVDSLFRATQKASF
                     IQSGQTYDLVNFDNERARITLQMRNSGFYFFDQDYVTFEADTNGLGHRVNVQYIIPNR
                     RINKGDSVATTAPFKQYKINRVRIITDHSPQNQMLPFSDTTYYKGYELFSHEASKYRS
                     KALTNAIAILPGSLYSDIDRTVTNTQINELRNFKYPTIHYKVDPDDSTQTGLISSIYL
                     TPRKKYTFGIDLDAYTSTIQQFGVGFSTSFLIRNVFRGAENLEISARGSVGSSKDNAI
                     SDSQFFNTSDVGVDARLSIPRLLFPINTQRIIPKYMAPTTAISTGLNSQQNIGLDRQN
                     FNSIFSYQWRPTNTRSNTFDLLNLQYVRNLNAANYFNVYRASYQRLNEIAQEVNYPFT
                     AEEPRLNIPDETNLFLSSVQDPQVPWSFNPELTREMNAIAQRKNRLTENNLILATNYT
                     WQIDNRETVNDNSFTRFQ"
     assembly_gap    4123..4177
                     /estimated_length=55
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4178..4692)
                     /locus_tag="DHV98_02900"
     CDS             complement(<4178..4692)
                     /locus_tag="DHV98_02900"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05321.1"
                     /translation="MTRSVTKISLILGFLLLQACSPTRRLTKEELWLVNNQIFVDELE
                     RKEAELSDLLLQKPNTKLPVVGLPLGVLVHNLATPDPHARFEQWLAAKPKRIERLQRL
                     ISAKQIRAIDSAKINFNQWLKNTGSAPVIIDTSKAARSLEQLKKYYYNQGYFNVKGRY
                     SVLKDTVKKNRG"
BASE COUNT         1209 a          994 c         1014 g         1375 t
ORIGIN      
        1 ctaagtaccg attgatgttt ttcttaaggt cttttctgtg tgaaatgaaa tctaagaaac
       61 cgtgctctaa tagaaattct gcggtttgaa aaccttcagg caactctttt cctgtggtgt
      121 cacgaacgac acgagggccg gcaaatccga ttaaagctcc tggctcactg atattaatat
      181 ccccaagcat agcaaaggac gcggtggtac ccccagtggt tggatctgtg caaagcgaaa
      241 tataagggat tttggcgtca gccagttggg ctaacttggc acttgttttg gccagctgca
      301 ttaaggataa tgcggcttcc atcatacggg ctcctccact tttggaaatg atcaataggg
      361 gcgttttgtt tttaagtgca tagtctgctg ctcgggcaat tttttccccg acaacacttc
      421 ccatagagcc tccgataaat ccgaaatcca tacaagcgac cactaagtct tcacccatag
      481 aacgcccgac tgcagtgcgc acagcatcct tgagatttgt tttcttttca gcttccttta
      541 gccggtccgt atattttttg gtgtcttgaa actttaaggt atccttagat cttaaatcct
      601 tgtcgagttc cttgaactta ttgtcgtcaa ataaaatctc gaagtactct ttactgccaa
      661 cacgcacgtg ataaccgtcc tccggactca cgtagaaatt gcgtgccaac tcatctgcgt
      721 cgacaatctt tccagtaggg gacttatacc acaatccttt aggaacgtct tttttgagct
      781 ccgtcggcgt ttgaattcct tttgttgtac gtttgaacca ggccatagga cttgttattt
      841 gtttacaagg tatctatatt gtttaaatct tcaaaggctt ttttcaagcg cgccttaaac
      901 gtcacctcac cttcgcgtaa ccatttacgg gggtcgtaat attttttgtt tggcagatca
      961 ccgccgtctg gattcccgat ttgcgttttt agatattcat attgccccac catataatct
     1021 cgaatccctt ctgtgaaggc aaattgtaaa tcggtatcaa tgttcatttt aaccacacca
     1081 taaccaattg attcgcgaat ttcgtccaga gtggaaccac ttccaccgtg gaagacaaaa
     1141 tcgattgggt tagtcccagt gccgaatttt tcttgaatat aggtttgtga gtttttaaga
     1201 atttttgggg tgagttttac atttcccggc ttgtaaacac catgcacatt tccaaaagcg
     1261 gccgcaactg taaattgatc gctcacttgc atgagttgct cataagcata ggcgacttct
     1321 tcgggttgtg tgtagagttt cgaactgtct acatcagaat tatctactcc gtcctcttca
     1381 ccaccggtaa tgcccagttc aatttccaag gtcatcccaa ttttactcat tctctcgagg
     1441 tagtgtttac agatttcgat attctcttcc aaaggctcct ctgaaagatc aatcatatga
     1501 ctgctaaata aagtccgtcc tgtacgggcg taatgcgttt cgctagcact aattaagcca
     1561 tcaatccaag gcaaaagatt tttagcacag tgatcggtat gtaaaatgac cggagtctga
     1621 taggcttgag cgagtgcatg gatatgatgt gctccagcga tactccccgc aatggcagcg
     1681 cgttggccct cattggacaa gccctttccc gcgttaaatt gcgccccacc atttgaaaat
     1741 tgaataatca ccggtgcgtt gacttcgcgc gcagtttcca atacggtgtt tatcgtattt
     1801 gagccaacca cattaaccgc gggcatggcg tattgttttg acttagcgtg ttggaaaatt
     1861 gcttggacct cctgaccaga ggccactcct ggctttatgg aatggctcat atttttgaac
     1921 tttgattagg ggtcaaaaat agaaaaaaat accggtttag aaggggtagt ttattcctat
     1981 gttatacaca gcattggcaa aattatattc cttaaaccaa cgatcatttg ctgggcgggc
     2041 tggattgtgg gttttaaatc ccgtctcaaa tcgaatcaca aaaaaaccaa agtcatagcg
     2101 aaggccaagg ccgctggcca cggcgagttc ttttaagtct tcgagaccat tgaattggaa
     2161 ggcgggatcc aaaacatcgt ccttgaaatt ccaaatattg cccacatcgg caaaaaatgc
     2221 ccctttgaac ccaccaaaaa taggaaagcg atattcgagg ttaacgctga gtttaaaatt
     2281 agcttcatta aaatcaagat tgctgccact agaacctgga cccaaatcat aagcgcgcca
     2341 gcctctgata tcgttagccc ctcctgcaaa ataacttcga gtaaagggaa tagacgagct
     2401 gtttccaaag gggagcgccc aacctccgaa acctctaaag gccattacat tttgactgcc
     2461 taaatcccag tgtctgatat agtctaactc cagttttgcg tattgtgaaa aagcgacgcc
     2521 aaaaaattct cttcgcccta aagcgtctgt tgatccactg agttgactca ggcctgacag
     2581 caagctaccc gcgagctcgg ccttccactn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnctg aaatctggtg aaactattgt cattaacggt ctcgcgatta
     2761 tctatttgcc acgtataatt tgtcgccaga attaggttgt tttcagtgag tcgattcttt
     2821 ctttgagcga tggcattcat ctcacgggtg agttcgggat taaaactcca cggcacttgg
     2881 ggatcttgaa cactgctcaa aaacagattc gtctcgtctg gaatattgag tcgaggctct
     2941 tctgcggtga aagggtaatt gacctcttga gcaatttcat tcaggcgctg ataagaggca
     3001 cggtagacat tgaaataatt agcggcattc aaattgcgca catactgaag gttcagcaaa
     3061 tcgaacgtgt tgctgcgcgt attggtcgga cgccattgat aactaaaaat actgttgaaa
     3121 ttctggcggt cgagtccaat attttgttgg gagttgagtc cggtactaat ggccgtcgtg
     3181 ggggccatat acttagggat aatcctctga gtatttatcg gaaataaaag tcgtggaatg
     3241 ctcaatcgcg catccacccc cacgtcagag gtgttgaaaa attgactgtc gctaatggcg
     3301 ttgtcttttg acgaaccgac acttcctctt gccgaaatct ctaggttttc tgcgccccga
     3361 aaaacattgc gaattaaaaa tgaggtactg aatcccacgc caaattgttg aatggttgag
     3421 gtgtaggcat cgagatcaat tccgaaggtg tacttctttc gtggagttag ataaatactg
     3481 ctgatcagtc cggtttgggt tgaatcatct ggatcaactt tataatgaat tgtggggtat
     3541 ttaaagttgc gcaattcatt gatttgggtg ttggttaccg tccggtcaat atcactatac
     3601 aagcttcctg gaagaatggc gatggcatta gttaacgctt tagaacgata ttttgaggcc
     3661 tcgtgactaa agagttcata ccctttatag taggttgtgt cgctaaaagg aagcatttga
     3721 ttttgagggc tgtgatcggt aataatgcga acgcgattaa ttttatactg tttaaaaggt
     3781 gcggtcgtcg ctacggagtc gcccttgtta atccgtctgt taggaataat atattgcacg
     3841 ttaacgcgat gaccgagtcc attggtatcg gcttcaaagg tcacatagtc ttgatcaaaa
     3901 aaataaaagc ccgagttgcg catctgaagt gtgattcgcg cgcgttcgtt atcaaaattg
     3961 accaagtcgt aggtttgtcc ggactgaata aaggaagctt tttgagtggc cctgaaaagt
     4021 gaatctacct caggggattc tattttgtaa gtcaggtcac cgatactgta gggttggttt
     4081 ggtgttaggg aatattgcag actccccctg ttttttttga cannnnnnnn nnnnnnnnnn
     4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnccc ctgttttttt tgacagtgtc
     4201 tttcaggaca ctataacggc cttttacatt aaaataaccc tggttgtagt aatatttttt
     4261 tagctgttcc aaagaacgcg ccgctttact tgtatcgata ataaccggag cacttcccgt
     4321 atttttgagc cattgattga aattgatttt ggccgagtct atggcacgta tttgtttggc
     4381 cgagatcagc cgctgaagtc tttcgattct tttaggtttc gcggctaacc attgctcaaa
     4441 ccgggcatga ggatctggtg tggccaaatt atgaaccaat accccgagcg gtaggcccac
     4501 tacaggtaat ttggtgttgg gtttttgcaa caaaaggtcc gataattcag cctctttgcg
     4561 ctctagttca tcgacaaaaa tttgattgtt gaccagccaa agttcctctt tggtgagtcg
     4621 ccgtgtggga ctgcatgctt gaagcaatag aaatcctaaa ataagtgata tttttgtgac
     4681 agagcgcgtc aagagatcgg tgttaatacc tcaaaaatag gataaatttg ataagcaata
     4741 gcgaaataaa attaa
//
LOCUS       DPUP01000086            7271 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13477,
            whole genome shotgun sequence.
ACCESSION   DPUP01000086 DPUP01000000
VERSION     DPUP01000086.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7271)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7271)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7271
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..3110)
                     /locus_tag="DHV98_02905"
                     /pseudo
     CDS             complement(1..3110)
                     /locus_tag="DHV98_02905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032284.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
     assembly_gap    1424..1481
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3114..>3643)
                     /locus_tag="DHV98_02910"
     CDS             complement(3114..>3643)
                     /locus_tag="DHV98_02910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05322.1"
                     /translation="YLQGKETTLASKEELAKQLPKINKKFLSFTDFAEASLEEIFGAK
                     SLTAGLIKSVNELNSCYFENTGNNSFTLHYLPIDAQYSSIRDLQISDLNQDGWPDLLI
                     SGNDYELSTQLGRLDAFKGGALMNYSGTFRFEKVTKEPWLGAGRGWTQLARPQDTLWI
                     MARNNNTPLIIEKNN"
     assembly_gap    3644..3786
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3787..5735)
                     /locus_tag="DHV98_02915"
                     /pseudo
     CDS             complement(3787..5735)
                     /locus_tag="DHV98_02915"
                     /inference="COORDINATES: protein
                     motif:HMM:PF07593.10,HMM:PF13517.4"
                     /note="too many ambiguous residues; incomplete; missing
                     start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    4218..4229
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    5736..5820
                     /estimated_length=85
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5821..6655)
                     /locus_tag="DHV98_02920"
     CDS             complement(<5821..6655)
                     /locus_tag="DHV98_02920"
                     /inference="COORDINATES: protein motif:HMM:PF13517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05323.1"
                     /translation="MTLLRRIVLQKFTKKTLLSLIILVSLTSCGHETRFKLKSSGETG
                     IDFTNQLVSLPNQNILNYIYFYNGGGVAIADLNNDNLPDLIFGANQTLPELYLNLGDF
                     KFQKSPLPKIASGWNNGIAIGDVNGDGWIDLYLARVASDSVPEVHNALLVHQGLDEQG
                     RPVFDEQAKKYGLDFRGLSTHSSFLDYDLDGDLDLFLLNHSVNPNMNYGNGAKREKAD
                     SVSGDRLYENQNGLFVDVSAQAGIFQGSIGYGLGLSIADYNNDGYPDIYVGNDFFEND
                     YL"
     gene            complement(6795..>7271)
                     /locus_tag="DHV98_02925"
     CDS             complement(6795..>7271)
                     /locus_tag="DHV98_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HCK05324.1"
                     /translation="GTILKDRSGNPLVFTKELPGLSGNGENTGIRIIKYHPGDDGGSF
                     RNHEIVFRYADAHLMKAEAMMRSGGNATPMVNALRTLRGATPLGSVTDADLLAERGRE
                     LYVEFWRRNDMLRFGQFTRAWEFKNEASVGDDTWKLFPIPVNALLSNPNLVQNPGY"
BASE COUNT         1874 a         1528 c         1488 g         2083 t
ORIGIN      
        1 gaaagttgtg ccctggtagg taaatcttca aatgtaaaga cgccatcccc ttgattatag
       61 gcgactactg aatgcgcata gcgcgcttcg agaactgtgg tattgcttaa aattgttggt
      121 gtaaacaatt cttgaataga ttttttggca tactcagagg cctttaaatt ttgtttttta
      181 agggacacaa gttgtgtcgt catctccttt ttctgatgga tgggcatatc ccgtccctct
      241 agatgttgag agataatttg ttcataggtg ccattgttgt caaaatcatt gacccaaaga
      301 cgcattggag cgtcggcccg tggtttataa tggatattgc ccccttggtt tccgagaatt
      361 aaatctaggt caccatcgct atcaatatct gcggaggtta cggtattcca ccaacccgag
      421 cgctcatcca aagcacttgg tatgtgctga aattcattgc ctttccattg gaataagtgc
      481 ggagcacccc aatccgatac ggtcacaagg gtccagcctt gttcgaaggc cacccattgt
      541 gcatcggtga ccattcctgc ttgttgtagg gcgattgctt tgtcattact gcgatctaca
      601 aagtttccaa ggccattgtt ttctaagaaa aattgcttcg gacgcatgcc ataaacccca
      661 acaatactgc gagaagtcac cacaagatct aagtcaccat cgctatcgac atcatgtggg
      721 gcaatagccg agatattgtt tatgttgctc aggctcatta tgcctgtttt ggtaaaattt
      781 cccttggagt cattgaggta gagtctaagc gattctctcg aggcttcatc gacctgattt
      841 cccccagagc caaccaataa atcgagatca ccgtctccat caatatctgc aagggctgct
      901 gcagtatcct cgaattcggc atcttgaatt aaatcaactt gattattgtg acttaatttg
      961 cctgcaccaa gatgcataag tatttgtcct gactggccct tagcgcctcc taagaaaata
     1021 tcttgatgac catctccatt gagatcacct accgccatgc aaggcccttc ttgagaaatc
     1081 atttttccca agagtccttc gtagtcaaaa tcgttatagg ggttttcatc gtgggggatg
     1141 attaagggat tggctacctc agtcaagagg gttttctttt gttgcaccac ttttggagca
     1201 aggaattgac ccgcgttggc ctgctcttga taaaggttga gtttttggtt aaccgcaaca
     1261 tctcttagga cggtcttggc gtcatttggc cagcgcacct caatcgagtc aattcgattg
     1321 tatttcccga ggcctatggt catgatgtaa tccattgagg attgaaatcc tcttgagggc
     1381 tgcaactctt gtacgagctg ctgcccacct atatagagtt taannnnnnn nnnnnnnnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn natagagttt aacccaactt
     1501 ccgatcgcaa atttattttg cagcggacct tcaagctgaa gttttatata gttgttttgg
     1561 tcaatttcat tggtgtgatt ctgatagaca aaggcctgca tattcacatt attgaccaca
     1621 aggtctaagt ctccatcatt gtctaagtct ccataagcag cgccattgga cagactggga
     1681 acacccaggc cccaatcctt tgctttattg tcaaaagtga ggtccttttg gttgtgaaaa
     1741 gcatagttgg gtaggggata gacaggcatt ttgttgataa tggaatcaat cgcctctttt
     1801 tttcccgtga gggccatgtc ctgaatgatt tcattggcaa agaaatcgac aaaatctaaa
     1861 tcggttaaat catgattgat tccattggtg acataaatat cgcgaaagcc atcgttatcc
     1921 atgtcaaaaa taagcccaga ccaactccaa tcggtggcgg ataccccact gaaatatgcg
     1981 atttctgaaa aacttccatt tccgttgttc agttgcaggg tgttttgaat gtattgttga
     2041 aagaagtctt tactctgttt gagtttaaaa acattgtaac cttcaaattc catcacagac
     2101 tttaccctct ggtcgccatc ggggagcata tccgttatga aaatatcgtt caggccatcg
     2161 ttattgatgt cggccatatc gacacccatt gcagagaggc aaaggtgtga tgtccagttt
     2221 tttatatctt ctgtaaaggt gccatcctga ttgttaatgt agagatagtc gcgctcgtaa
     2281 aaatcgttag aaacatagat atcaggataa ttgtcgtcat tcacatcgct caccataacg
     2341 ccaagcccaa acccaatcaa actcccataa atacccgctt gctcactgac atcggtaaat
     2401 acaccatcgt cattacgcag caacatatca cccacgcccc gaaacatttt tgggacattc
     2461 caatcttggg cacgaacatc gcgttgatgc gcaaaaccaa ggctactgac tgggatatta
     2521 ctgttgttca aaatataggc atcgaggtct ccatccttat cataatcaaa gaaactggca
     2581 tgcgtagaaa atccagtttc tgctaaattg tatgctttgg cttgttcact aaaggttaaa
     2641 tcaccattat taatgaataa atcattgttg tggttttcac cctccatatt tcccgcattc
     2701 gaaacataaa tgtccaataa gccatcttga ttgacatcca ccataactac ccctgtagac
     2761 caaggtttat tcccttgaac cccggcggcc acagaaatat cctcaaaaac ccaattgcct
     2821 ttattgagat ataacttatt tggtcccata ttggcggtta aataaatgtc agacaggcca
     2881 tcgttattga tatccccaat agctacacca cctccgttgt aaaaatttcg gtatttaaat
     2941 atgttgaagt ctttttgatt ttcgactttg ttgctaaagg tgatgttgga ttgctcagag
     3001 gagactaggc taaatctttg aggccctagg ttttcctgat tctgcttatt ttgacaggct
     3061 gtgacgagca gtgctgcgat ccataaaatc caatggtgtt gaaatctcat ttgttagtta
     3121 tttttttcga taattaaagg ggtgttgttg ttgcgtgcca tgatccaaag ggtgtcttgg
     3181 ggtcgggcga gctgggtcca tccgcgccca gcacccagcc aaggttcttt ggtcactttt
     3241 tcaaaacgaa aggttcctga gtaattcata agcgctcctc ctttaaaggc atctaagcgc
     3301 ccgagttgtg tgctgagttc gtaatcgttt ccgcttatga gcaagtctgg ccacccgtct
     3361 tggtttaaat cactgatttg taaatcccgt atgctcgaat attgcgcatc aatgggcaag
     3421 tagtgcaggg taaatgagtt attgcccgtg ttttcaaaat agcaactgtt tagttcattc
     3481 acagatttaa tcaaaccggc tgtcaaggat tttgcgccaa aaatttcttc tagtgaggcc
     3541 tcagcaaagt cggtaaagga taaaaacttc ttgttaattt ttggaagttg tttggctaat
     3601 tcttctttgg aggccaaagt agtttccttg ccttgaagat aatnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnntaat acgtgactac agtttcttcg gattgatttt gatcaaaatc ataacgatat
     3841 aaacgtatag gctcctggtt tgaggcatgc caacgcagat ttgtccccca attacctgcg
     3901 actatgtcta aatccccgtc gcgatcaaag tctgctacag ctaatgagga ccaaagaccg
     3961 taacaatcat ccaggccggt attctgaagg cggtctaagc ctgaacccgt gttgatccat
     4021 accgcaaggg tgttccaatg gccacagctt agggcatctt gaagcccatc cccattgaga
     4081 tcggcccaaa ctaaatcact gatcggacca gaatgactaa aggcttctcc ccattgcgcg
     4141 gtataatcct caaaatgacc gttacccgtg tttttgagca aataatgctt tggatctacg
     4201 ccgaatttat gggctttnnn nnnnnnnnnt gtttgataga attctggcag tgcttcggga
     4261 tcataagtga atgactgtcc tgtacccagg tataatcttg ggcggagtgc ttctccgctg
     4321 gtgaattcat taccaccata tccgatcaaa atatcgttta gtgcgtcgtt attggcgtca
     4381 agaataatta cggcggtgcc ctcaccaatg gcgtcgactg ggtcggtaaa atcagcgtgc
     4441 ataaattggc catcgctctg ctggaaaaat acaactgtat tttgtccttt ggccccggta
     4501 atcactaaat cctgtaatcc gtcgttattt aaatctccac tggccatggc gggcccttcg
     4561 ttatttaggg catacggggc caatggattt ctattgaaat ccaaggcaga gcgttcctga
     4621 tgcctccagt ttatgccctg tgatatccta gcaatagcat gatcttctgc atggttcgat
     4681 tcattttctg cggcagggat ccggcgcgtt tttgattcat gattttttat aagacttggg
     4741 tcagcgggga taattaaatg ctgattggtt gggacggatc gcaacacttg tcgtcctgtt
     4801 gtgggccaat ctatgaccaa ggaatcgagt tgctcgatac ccccgaggcc aaaatgtagg
     4861 actgccggac tcgacgagag aaagcctcga gtggtgtaat tttcacgggt aaattgctgg
     4921 tttttataat acgcggttac tcttgcaccg atgccaaaag catttttagt ggtatcacgc
     4981 agtgcgatac tgagataatg ttgctcagga tccatctccc tggtttgatt ttggagtata
     5041 aagcagggtt cattggtatt gttgaccacc aggtctaaat caccatctag gtcgagatcg
     5101 gcataggccg ccccatggct gtagctcgga agtttaggga tccaagaacc ggtctggtcg
     5161 tccatggctt gaccgtccct atttttaaaa atataattgg gtgttttttt ggcgggaatc
     5221 gcctcaataa agcgcattga ttctcgcttc atagacgcgc ctaattgctt ttgaatggct
     5281 tggtctgcaa tgaaattaat aaaatccata tcgttggtcg ccccaaggat tccgttggta
     5341 acaaaaaggt cattgaggcc gtctaaatca aaatccgcca aaagaggact ccaagaccat
     5401 tcggttgctg aaattccagc ggcgttacca atttcactaa atacggcctc accccgattg
     5461 agttgaagcg tgttttgcat gtattgatgg tcataaccat ttttaaggta ttgatcgtac
     5521 aattggtaat tgaactcggt tcctgaggtt ttgtaggtgg ttaggtcttc agggagcata
     5581 tcgacagaca ccaaatccat caaaccgtca ttattgatat caccactatc atttcccata
     5641 gaatagtgtg tggtatgccc caaggcctcg ttttgagttt gaatgatctc tttgaatgat
     5701 ttatcccttt ggttgaggta gaggtagtca ttttcnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5821 agaggtagtc attttcaaaa aaatcattgc ctacataaat atcaggataa ccgtcattgt
     5881 tataatcggc aatgctcagg ccaagtccat agccgatact gccttgaaaa atgcccgcct
     5941 gtgctgaaac gtcgacaaat agaccatttt gattttcata aagacgatcg cccgatacag
     6001 aatctgcttt ttcgcgtttc gccccgttcc cataattcat gttaggattc acactgtggt
     6061 ttaaaagaaa taaatctaaa tcaccatcca agtcataatc caaaaagcta ctgtgggtgc
     6121 taagtccgcg aaagtctaaa ccatattttt tagcttgctc gtcaaacacg ggccttcctt
     6181 gttcatcgag accttggtgc actaaaagtg cgttgtgaac ttctggtacg gagtccgatg
     6241 ccacacgcgc tagatataga tctatccatc catctccatt gacatcacca atagcaatcc
     6301 cattattcca tcctgaggca atctttggaa ggggcgattt ttgaaatttg aaatcgccta
     6361 gattgagata aagttccggt aatgtttgat tggcgccaaa aatgagatcc ggtaaattgt
     6421 cgttgtttaa atccgctatc gcaacgccac cgccgttata aaaataaatg taatttaaaa
     6481 tattttggtt tggcaaggag acgagttgat tggtaaaatc aatgcccgtt tcccctgaag
     6541 actttaattt aaaacgtgtc tcatgtccgc acgatgttaa gctcactaga atgataagcg
     6601 agagcaacgt tttcttagta aatttttgaa gaactattct tctgagtagg gtcattgata
     6661 gacagaattt tccaatcact aatgtagcca gtagattata tccttcgagc agttgaaaaa
     6721 ttaaaaagat taataaaaga ttaaaaaaaa agccacctct aagaggtggc tttaatattt
     6781 aaatcacaat cggattagta tccaggattc tgaaccaagt tagggttaga taacaaggcg
     6841 tttactggga ttgggaaaag tttccaggtg tcatcaccta ctgaagcttc gtttttgaat
     6901 tcccaagcac gagtgaactg accgaaacgc aacatgtcgt ttcttctcca gaactcaacg
     6961 tataactcac gtccacgctc agccaaaagg tcagcatcgg taacgctgcc tagtggcgtt
     7021 gcgccacgta gggtacgcag tgcattaacc ataggtgtag catttcctcc tgaacgcatc
     7081 atcgcttcgg ctttcatcaa gtgggcatca gcatagcgga atacgatttc atgattacgg
     7141 aaagatccgc cgtcatcacc agggtgatat ttgatgatac gaataccagt gttttcaccg
     7201 ttacctgaaa gacctggtaa ttctttagtg aacacgagtg gatttccaga acgatctttt
     7261 aggatagttc c
//
LOCUS       DPUP01000087            4098 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_36395,
            whole genome shotgun sequence.
ACCESSION   DPUP01000087 DPUP01000000
VERSION     DPUP01000087.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            52..1209
                     /locus_tag="DHV98_02930"
     CDS             52..1209
                     /locus_tag="DHV98_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_437517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminoethylphosphonate--pyruvate transaminase"
                     /protein_id="HCK05325.1"
                     /translation="MGEPYLLTPGPLTTAYSVKQEMLRDWGSWDDDFRSMTRAMCSQL
                     LALVGDEKDEFSCVPMQGSGSFCVEAMLGTLVPRNGKVLVLANGAYGLRAAEIMRYMG
                     REFTLIDKGDYMPPRGDEVGVALDSDHSITHVIAIHCETSSGVLNPIEEISKATYARG
                     RKLLIDSMSAFGAIDIDVNNIRYEAMVSSANKCIEGVPGFGFVIARTLELSKCKGNSH
                     SLALDVYAQWTNFVKTGQWRYTPPTHVVAAFLEALRIHAAEGGCAGRLVRYTQNRDVV
                     VAGMRKLGFETLLSDRWLSPIIVTFFCPAHKNFLFPGFYNLMKKKGFIIYPGKLTTVE
                     SFRIGCIGRMDENVMLRVVKAAEETLAEMGVSNATPPAEALLEKAKLEALG"
     gene            1235..2485
                     /gene="phnA"
                     /locus_tag="DHV98_02935"
     CDS             1235..2485
                     /gene="phnA"
                     /locus_tag="DHV98_02935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_437518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetate hydrolase"
                     /protein_id="HCK05326.1"
                     /translation="MNNVTLAPVVANGRQYPWPKVPAIAICLDGCEPEYLTQAIKAGL
                     MPTLKKMRESGTDRLAHSVIPSFTNPNNMSIATGRPPIVHGICGNYLYEPETGEEVMM
                     NDVRFLRAPTVFSQFYNAGARVAIVTAKDKLRALLGAGLQFTDGRAKCFSAEKSDTTT
                     NAEHGQEAASKWLGMPQPEVYSADLSEFVFAAGVKILAEWKPDLMYLTTTDYVQHKYA
                     PEQPEAQSFYKMFDKYLAQLEAMGAAIVVTADHGMKPKHLEDGSPAVIYVQDLFDKWL
                     GKAVARVILPITDPYVVHHGALGSFAVAYIPKGVDHAEIIAKLKAVDGITHVLTREEA
                     IAQFELPGDRIGDIIMISGENITIGTSANRHDLAALDEPLRSHGGLSEQEVPFIVNRV
                     MDIPNLPILRNFDALFYATAAAAL"
     gene            2498..3979
                     /gene="phnY"
                     /locus_tag="DHV98_02940"
     CDS             2498..3979
                     /gene="phnY"
                     /locus_tag="DHV98_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009157314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetaldehyde dehydrogenase"
                     /protein_id="HCK05327.1"
                     /translation="MNVSAPNFDPRTRKWEIRHEGMRIGGEKVFGSEVLEVHYPYTDE
                     VIGTVPAGKPEHVRRAFEIAAAYKPKLTRYERQQILFRAASLIKDRREELAFWLVLEL
                     GICWQHALYETGRAFDVFTLAGQMAIIDDGQIFSCDLTPQGKERKIFTLREPVRAISA
                     ITPFNHPLNMVSHKIAPAIATNNCVVCKPTELTPLTAIALADILYEAGLPHQMFQVVT
                     GWPKDIGDEMITNSNIDIITFTGGVTVGKMIASKAGYKRCALELGGNDPLIILNDLSD
                     TDLEKAATLAVAGATGNSGQRCTAIKRILVQESVADRFVSIVLQKAKELRFGDPMDPE
                     TQLGCVIHSTAAETFERRVYDAEACGAKILYHPGRRGALLPPIVVDHVPHNSELVMEE
                     TFGPIIPIIRVPDDDAKVMDISNSTEFGLSSGVCTNDLNRAIAFINGLDVGTCNIWEQ
                     PGYRIEMSPFGGIKDSGNAVKEGVLEAMKFFTNLKTYSLPWPR"
BASE COUNT         1066 a          860 c         1020 g         1152 t
ORIGIN      
        1 tagagaggta atatttcgat ggcgcaatca gatatttttg ctgatccaat tatgggtgag
       61 ccctatcttc ttactccagg gcctttgact actgcgtata gcgttaaaca ggaaatgtta
      121 cgtgactggg gctcttggga cgacgacttt cgttcaatga cgcgagctat gtgtagtcaa
      181 ttactggcac tggtcggcga tgaaaaggat gagttttctt gtgttcccat gcaaggttca
      241 gggtcatttt gtgtcgaggc gatgctagga acgttagtcc cacgaaacgg caaggtactt
      301 gtacttgcta atggcgctta tggcttacgc gccgccgaaa ttatgcgcta tatgggccgt
      361 gagttcacac ttatcgacaa gggcgattat atgcccccgc gtggcgatga agttggtgtt
      421 gcgctggatt ctgaccattc gataacgcat gtaattgcaa tccactgtga aacttcctct
      481 ggggttttga acccaataga ggagatttct aaggcgactt atgctcgtgg ccggaaacta
      541 ttaattgaca gtatgagcgc ctttggcgcc attgatattg atgtgaataa catccgatat
      601 gaagcgatgg tttcttcggc aaataaatgt atcgaagggg tgcctggttt tggttttgtt
      661 atcgcccgca ctctggaact ttctaaatgt aagggcaata gtcactctct ggctctagat
      721 gtttatgcac aatggacaaa ttttgttaaa actggtcagt ggcgctatac gccacctaca
      781 catgttgttg ccgcgtttct tgaggcattg cgcattcatg ctgctgaagg tggatgcgcg
      841 gggaggcttg tacgctatac acaaaatcgc gatgtagttg tggccggcat gcgcaaacta
      901 ggttttgaga cattattaag tgaccgttgg ctttcgccca ttattgttac ttttttctgc
      961 cctgctcaca aaaacttttt atttccaggt ttttacaatt taatgaaaaa aaagggattt
     1021 attatttacc ctggaaagtt aactacagtt gaaagtttcc gtatcggttg catcggtaga
     1081 atggatgaaa atgtaatgct acgtgtggta aaagctgccg aagaaactct agcggaaatg
     1141 ggcgtcagca atgctacgcc tccagcggaa gctctattag aaaaagctaa gcttgaagca
     1201 ttgggttgaa aaatatcgat gaaaaggaaa ataaatgaac aatgtcactc tcgcacctgt
     1261 tgtcgcgaat ggccgtcaat acccatggcc taaggtgccc gcaattgcga tttgccttga
     1321 tggttgcgaa cctgaatatc taacacaagc tatcaaagcc ggattaatgc caacgctgaa
     1381 aaaaatgcgt gaatcgggta ccgaccgctt agctcactca gtaattccgt cttttaccaa
     1441 tccgaataat atgtctattg ctacaggccg tccaccaatt gtgcatggca tatgcggtaa
     1501 ctacctttat gagccagaaa ctggtgaaga ggtaatgatg aatgacgtac gttttttacg
     1561 cgcaccgaca gtattttcac agttctacaa tgctggagcc cgcgtcgcga ttgtaactgc
     1621 aaaagataaa ctccgtgcgc ttcttggagc tggcttacaa ttcaccgatg gtcgtgcaaa
     1681 gtgtttttca gctgaaaaat ctgacacaac caccaacgct gagcatggtc aggaagctgc
     1741 cagtaagtgg cttgggatgc cacaacctga agtttattct gcagacctgt cagaatttgt
     1801 ttttgctgcg ggtgtaaaaa tactggctga atggaagccc gatttaatgt atcttaccac
     1861 aacagattat gtccagcaca agtatgcacc ggaacagcca gaggcccaga gtttttacaa
     1921 gatgtttgat aaatatttgg ctcagcttga ggctatgggt gctgcaattg ttgtgaccgc
     1981 ggatcatggc atgaaaccga agcatcttga ggacggctct ccggctgtga tctacgttca
     2041 ggacctgttt gataagtggc ttggtaaggc ggttgcccgc gtcattttac ctattactga
     2101 cccttatgtt gtgcatcatg gagcattggg atcatttgcc gtcgcttata taccaaaggg
     2161 tgttgatcat gcagaaataa tagccaagct gaaggctgtt gatggcatta cccatgttct
     2221 gaccagggaa gaagctattg cgcagttcga gctgccaggt gaccgtatag gtgatataat
     2281 aatgatttca ggtgaaaaca taacaattgg tacgtcggcc aatcgtcatg atcttgcggc
     2341 gttagatgag cctctgcgta gtcatggagg gttaagcgag caagaagtac ccttcatcgt
     2401 taatcgcgtt atggatatac caaatctccc aattttgcgt aactttgacg ctttgtttta
     2461 tgctactgct gcagcagctc tttgagagga ataactaatg aatgttagcg cgccaaattt
     2521 tgatccccgt actcgcaagt gggagatccg tcatgagggt atgcgaattg ggggtgagaa
     2581 agtttttggt agcgaggttt tggaggttca ttatccttac actgatgagg tgataggtac
     2641 tgtccctgcc ggcaaacctg aacatgttcg cagggcattc gaaatagctg cggcttataa
     2701 acctaagctt acccgatatg agcgccaaca aattttattc cgggccgcaa gcctaattaa
     2761 agatcgtcgg gaagaactgg ccttttggtt ggtgttggag ttaggcattt gctggcaaca
     2821 tgcgctttat gaaacaggtc gggcttttga cgtgttcact ttagctgggc agatggctat
     2881 tatcgatgat ggtcagattt tttcatgtga cctcacacct caaggaaaag aacgcaaaat
     2941 tttcacatta cgtgaacctg tgcgagccat ctcggcgatt actcctttta accacccact
     3001 taacatggtc agtcataaaa ttgcgccagc gattgctaca aacaactgtg tcgtgtgcaa
     3061 accaacagaa ctcaccccac taacggctat cgcgcttgct gatattcttt atgaggcggg
     3121 tttgccccat cagatgttcc aagtggtgac cggttggccg aaggacattg gggatgagat
     3181 gatcactaat tctaatattg acatcatcac ttttactggt ggcgttactg taggcaaaat
     3241 gattgcttcc aaggcaggtt ataaacgctg tgcgctggaa ctcgggggca atgatccgct
     3301 gatcattctc aatgacctat ctgataccga tcttgaaaag gcggcaactt tagcggtggc
     3361 gggtgcgact ggaaattcgg gccagcgatg tactgcaatc aaacgcatac tagtgcagga
     3421 aagtgttgct gatcgcttcg tatcaatcgt tttacaaaaa gccaaagaac tacggtttgg
     3481 tgacccgatg gatcctgaga ctcaattggg ttgcgtgatt cattcgactg cggcagaaac
     3541 ttttgagcgc cgcgtatatg atgccgaggc ctgtggggct aaaatactct atcacccagg
     3601 tcgtcggggg gcattacttc caccaatcgt agttgatcat gtgcctcata attctgaact
     3661 tgtgatggaa gaaacctttg ggcccattat tcctataatc cgtgtgccgg atgacgacgc
     3721 taaggttatg gatatttcaa atagcaccga atttggtttg tcatctggag tttgcaccaa
     3781 tgatcttaac cgcgccattg ctttcatcaa cggattagac gttggtactt gcaatatttg
     3841 ggagcaaccg ggttatagga tcgaaatgtc gccttttggg ggaataaagg atagcggtaa
     3901 cgcggtcaag gaaggcgtat tagaggcgat gaagtttttc actaacctca aaacttactc
     3961 tcttccctgg cctcgctaag attgaaatca ttaatttgtc gaaaaaaagg tgttgcactg
     4021 aagctttttt aaaaggccac atggatgaaa atttctcata ccgaaggcga gtctaatact
     4081 tctgtggctc gcagggcc
//
LOCUS       DPUP01000088            7028 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7250,
            whole genome shotgun sequence.
ACCESSION   DPUP01000088 DPUP01000000
VERSION     DPUP01000088.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7028)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7028)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7028
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1101
                     /locus_tag="DHV98_02945"
     CDS             <1..1101
                     /locus_tag="DHV98_02945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05328.1"
                     /translation="TTMKRTFNSIYAFSFAMISLFLAVSCSSDDPNFDYLNSAQIPSN
                     LGLIVTLTTDNSGNVIFTPSALSASKFNLDFGDGSEPVSVVPGTNAIHAYQEGAYTAT
                     LTAENINGEESAPLEQPVSVAYLAPENLEINVSPVAGDSFSIEVSATANLASGFEVFF
                     GDQENEVATPLEVGSSVVHTYAEIGAYQVRVVALSGGSQTIEATTEVIIDNPILLPLT
                     FEDATQDYTFFDFAGAINTKIANPDPSGINTSATVVEFFKEAGALVYAGTAIPLGENL
                     DFAQNSSLKMDVWSPIIGSTVKLKVENAANPNIAMEFDVITTVSGQWETLEFDFSGFD
                     LTQEYAKIVVFFDFGNTGNDDTFYYDNIDYAN"
     gene            1016..2758
                     /locus_tag="DHV98_02950"
     CDS             1016..2758
                     /locus_tag="DHV98_02950"
                     /inference="COORDINATES: protein motif:HMM:PF00722.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laminarinase"
                     /protein_id="HCK05329.1"
                     /translation="MLKSLYSLILGTPVMTTHSIMIILIMQTKTHLMNYKKLIFALLA
                     LPLMLVSCQDDDTPFGDVLAPTNLEATIDVADDLSGNVSVTPTAEYALTFHVYFKPDL
                     DPVVIGPGESANFRYTDTGVYTQDIVIIAYGRGGAASSISRSIDLDVILMIDPVILQN
                     LAGAPNQGKRWVWDSGTTGHFGVGDPAVDFANYFIATPNQLNPCMYDDVLIFSYDGMG
                     DYRFQLEPGDASFINWAEIKRFFPNDNPGQFNDECRDLTPFLSFDTSFVVLDDANTGA
                     STLTLQNSFLSYWSGASSYEIVSLTADELVVRGLQDPFDPPGAQLAWYHTFVPETTSG
                     PVECAGTTGNPGSGGNDVLVWAEEFDVDGAPCSENWSYDLGTGNNGWGNEEVQYYTDD
                     PSNIIVDNGVLRITAKSEFFAGSNYTSARIKSNQKFDFTYGRVEARAKLPTGGGTWPA
                     IWMLGSDYQTNTWPACGEIDIMEHVGNNQDEIFSSLHYPGNFGGNSVTQGITVPGVSD
                     DFHVYAVEWTADEIKFSVDGNVYHSVANTQLMPFDSDFFLITNIAMGGAFGGTVDPNF
                     QSSSLEIDYIRVYQ"
     gene            2815..3669
                     /locus_tag="DHV98_02955"
     CDS             2815..3669
                     /locus_tag="DHV98_02955"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05330.1"
                     /translation="MKTKLFSMIAVLTLSLGVAAQNSVSVDAGGNWLGYANIFDPATG
                     NYVFGEPWGVQDIKTVVDAGAGTLTLQPNFNTYAANPTDPFWVDQTTGLGAKIFEGNS
                     YIEDIFLAGAELTFSGNVNSNTLDGAYDAVAFIKVFNANYSVLKQATVPLNGANFEVV
                     FTDVNPAEDAVVQYGFQIIGLNANPDDEATLGSVVVSGGALSVNDFNTASFSVAPNPS
                     NSVWNVRSAQYDMTQVVLFDVLGKKVAQFNNPGTALAIDNSNLSKGAYFAQINTASGS
                     TTVQLMKN"
     gene            complement(3782..4927)
                     /locus_tag="DHV98_02960"
     CDS             complement(3782..4927)
                     /locus_tag="DHV98_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010230173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HCK05331.1"
                     /translation="MGQNRSYWESYLLKDIDYLIVGGGIVGLTCALTLKSEHPKARVV
                     VIERGIWPSGASIKNAGFACFGSVSEILDDAQRHSEQELIGLIRQRAQGLQRLKSIVA
                     PETMDYQERGGYEYFLRHQGALAEQCFTHLDWANQLAKEALKTTQDVFTPVENRFGFS
                     GISPKGILNKFEGQIHTGRLMEALSLKAAVCGVHFLGGVKAISHTANSSEVVLQTQDH
                     GIITTKKLLLATNGYTQDYLSDLVTPARAQVLITAPIPDLKIEGTFHLDQGYYYFRNI
                     EGRILLGGGRNLDFKGEQTTLEQTTEQIQGALERMLREVILPDFPGHAIGIERRWSGI
                     MGVGPQKKPIVNTLAPNVYCGVRLGGMGVAIGAEVGQKLAELATEVS"
     gene            complement(4992..>5486)
                     /locus_tag="DHV98_02965"
     CDS             complement(4992..>5486)
                     /locus_tag="DHV98_02965"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014165709.1"
                     /note="an AccC homodimer forms the biotin carboxylase
                     subunit of the acetyl CoA carboxylase, an enzyme that
                     catalyzes the formation of malonyl-CoA, which in turn
                     controls the rate of fatty acid metabolism; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCK05332.1"
                     /translation="ALPILEMNTRIQVEHPITEQVVDHDLIREQILVAAGVPISGKNY
                     LPQLHSIECRINAEDPYNGFRPSPGKITTLHAPGGHGVRLDTHVYAGYSIPPNYDSMI
                     AKLITTAQTREEAINKMKRALDEFVIEGIKTTIPFHRQLMDHPDYVAGNYTTAFMNEW
                     KMEE"
     assembly_gap    5487..5594
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5595..>6383)
                     /locus_tag="DHV98_02970"
     CDS             complement(<5595..>6383)
                     /locus_tag="DHV98_02970"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009782055.1"
                     /note="an AccC homodimer forms the biotin carboxylase
                     subunit of the acetyl CoA carboxylase, an enzyme that
                     catalyzes the formation of malonyl-CoA, which in turn
                     controls the rate of fatty acid metabolism; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HCK05333.1"
                     /translation="EMGIKTVAVYSTADAESLHVKFADEAVCIGPAPSSESYLKIANI
                     IAAAEITNADAIHPGYGFLSENAKFSKICEEHGIKFIGASAKMIDQMGDKASAKATMK
                     AAGVPCVPGSDGIIPDFETCKKVAKETGYPVMLKASAGGGGKGMRAVWKEEDLQNAWE
                     SARQESKAAFGNNDMYMEKLIEEPRHIEIQVIGDSRGKACHLSERDCSIQRRHQKLTE
                     ETPSPFMTDELRHAMGEAAVKAAEFISYEGAGTIEFLVDKHRNFY"
     assembly_gap    6384..6502
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6503..6639)
                     /locus_tag="DHV98_02975"
     CDS             complement(<6503..6639)
                     /locus_tag="DHV98_02975"
                     /inference="COORDINATES: protein motif:HMM:PF00289.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05334.1"
                     /translation="MPSKKTKGPNKAQENSMFKKILVANRGEIALRVIRTCKEMGIKT
                     VA"
     gene            complement(6655..>7028)
                     /locus_tag="DHV98_02980"
     CDS             complement(6655..>7028)
                     /locus_tag="DHV98_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002989035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, biotin carboxyl carrier
                     protein"
                     /protein_id="HCK05335.1"
                     /translation="SVYPATHTVMHAAPAALQVPVPSPAAPVAESSPAAAAPAAENDK
                     YITVKSPIIGTFYRKPSPDKSVFVEVGDTVSPGSVLCVIEAMKLFNEIESEVSGKIVK
                     ALVDDSSPVEFDQPLFLIDPA"
BASE COUNT         1745 a         1581 c         1507 g         1968 t
ORIGIN      
        1 acgaccatga aacgtacatt caacagcata tatgccttca gtttcgcgat gattagcctt
       61 tttttggcgg tgagctgtag ttcagatgac ccgaatttcg attatttgaa ttcagcacaa
      121 attccttcga atttaggttt gattgtgacc ctcaccacag ataactcagg aaatgtgatt
      181 tttaccccta gcgccttgag tgcctcaaaa ttcaacttag attttgggga tggaagtgag
      241 cctgtttctg ttgttcctgg aacaaacgca attcacgctt atcaagaggg ggcgtatact
      301 gccacgctta ccgcggaaaa catcaatgga gaggaatctg cgccgctaga acagcccgtc
      361 tccgtggcct acctagcccc tgaaaacttg gagattaatg tctcccctgt cgctggagat
      421 agtttttcta ttgaagtttc agccacagcc aatttggcct caggttttga agtcttcttt
      481 ggagaccaag aaaacgaagt cgccacccct cttgaggtcg ggtcttcagt agttcatacc
      541 tatgcagaga taggcgccta ccaggtacgc gttgtagccc ttagcggcgg aagtcaaacc
      601 attgaagcaa ccaccgaagt tattattgac aacccgattc tactgccact aaccttcgaa
      661 gacgcaacac aggactacac cttttttgat tttgcaggag cgatcaacac caaaatagcc
      721 aatccagatc cctcaggcat caataccagt gcgactgtgg tggagttttt taaagaagca
      781 ggggctcttg tctatgcagg tacggctatt cctcttggcg aaaacttaga ttttgctcaa
      841 aactcatctc ttaaaatgga tgtatggtcc ccaataatag gcagcactgt taaattaaaa
      901 gtcgaaaatg cggcaaaccc aaatatcgcc atggagttcg atgtcataac cacggtgtcg
      961 ggtcaatggg aaacattaga atttgatttt agtggttttg atcttacaca agagtatgct
     1021 aaaatcgttg tattctttga ttttgggaac accggtaatg acgacacatt ctattatgat
     1081 aatattgatt atgcaaacta aaacgcatct gatgaactat aagaaattaa tttttgcgct
     1141 cttggctctg ccgcttatgt tggtctcgtg tcaggacgat gatacgcctt ttggtgatgt
     1201 gctcgcgcca actaatcttg aagcaaccat tgatgtcgct gatgatttgt ccggcaatgt
     1261 ttctgtaaca ccaaccgcgg aatacgcctt gacttttcat gtctacttca agccggattt
     1321 agaccctgtg gtcatcgggc cgggggaatc tgcgaatttc cgatatacgg acactggggt
     1381 ttacacccag gatatcgtga tcattgccta tggacgaggc ggtgcagcca gttcaatctc
     1441 gcgcagtatt gaccttgatg tcatcttaat gatcgacccc gttattcttc aaaatttagc
     1501 gggtgcgcca aaccaaggca agcgctgggt ttgggattct ggtactaccg gacacttcgg
     1561 tgtgggtgac ccggctgtgg attttgccaa ttactttatc gctacaccaa atcagctcaa
     1621 tccatgcatg tatgatgatg tactgatctt tagttatgac ggaatgggag actaccgctt
     1681 ccaattagag cctggggatg catcatttat caactgggcc gagatcaagc gattttttcc
     1741 caatgataac cccggtcagt ttaatgatga gtgtcgtgat ttgaccccat ttttgtcgtt
     1801 tgacacttct tttgttgtgc tcgatgacgc caatactggg gcttcaaccc taaccctcca
     1861 gaatagcttt ctttcttact ggtctggagc gtcgtcttat gaaatagttt cactaaccgc
     1921 agacgaatta gtcgttcgtg gcctacaaga tccatttgat ccaccaggag cacaactcgc
     1981 ctggtaccac acttttgttc ctgaaacgac ttcggggcct gtggaatgtg ctgggaccac
     2041 tggtaaccca ggcagcggag gtaatgatgt gctggtatgg gctgaagaat ttgatgtaga
     2101 cggagcacca tgttccgaaa actggagcta tgacctagga actgggaaca atggatgggg
     2161 taacgaagag gtccaatatt atacggacga tccttcaaac atcattgtag ataatggtgt
     2221 gttgcgcatc acggccaaat ctgagttttt tgctggcagt aattatacct cagcacgaat
     2281 taagtccaat caaaagtttg actttaccta tgggcgtgtt gaagcgcgag caaaactccc
     2341 cactggtggc ggaacgtggc ctgcgatttg gatgctcggt tctgattatc aaaccaacac
     2401 ttggcctgct tgtggagaaa tcgatatcat ggagcatgtg ggcaataacc aagatgaaat
     2461 attttcatcg ctccactatc ccgggaattt tgggggtaat tctgtaacac aaggaatcac
     2521 cgttccagga gtttctgatg attttcacgt ttatgctgtg gaatggaccg ccgatgaaat
     2581 caaattttcc gtagacggaa atgtttatca ttcagtggcc aatacccagt tgatgccctt
     2641 tgacagtgat ttcttcctca tcaccaatat cgctatgggc ggagcctttg gggggaccgt
     2701 tgatccaaac ttccagagct ctagcttaga aatagattat atacgcgttt atcaataaaa
     2761 acaactgaac caaaataaat caaacattta attcacttta ttaatcttta acttatgaaa
     2821 acaaaattat tttcaatgat tgccgtcctg actttaagtt tgggtgtggc agcacaaaac
     2881 tctgtgagcg ttgacgctgg cggaaactgg ttaggctatg ctaacatttt tgatcctgca
     2941 actggtaatt acgtttttgg tgagccatgg ggggtccaag acatcaaaac tgtagttgac
     3001 gccggagctg gaactttaac ccttcagcca aacttcaaca cttatgcagc aaacccaaca
     3061 gatcctttct gggtagacca aactactgga ttaggtgcta aaatttttga aggtaactct
     3121 tacatcgagg atattttttt agctggtgcc gaattaactt tttctggtaa cgtaaacagc
     3181 aatacccttg acggagctta tgatgctgtg gcttttatta aagtattcaa cgccaattac
     3241 tcagtgctaa aacaagcgac tgttccgtta aacggagcta acttcgaagt ggtctttact
     3301 gacgtaaacc cagctgagga tgcggtcgtt caatacggat tccaaatcat tggattaaac
     3361 gctaatccag acgacgaagc tactcttgga agtgttgtgg taagcggtgg cgctttgagt
     3421 gttaatgact ttaatacggc ctcatttagc gtagcgccaa acccatcaaa ttcagtttgg
     3481 aatgtgcgtt ctgctcagta cgatatgaca caagtcgttc tttttgatgt tttagggaag
     3541 aaagttgctc aattcaacaa cccaggaact gctttggcca tcgacaacag caacttaagc
     3601 aaaggcgctt attttgccca aatcaacacc gcttcaggaa gtactacagt tcagttaatg
     3661 aaaaactaat ttactgaagt tcattattgt tttactctcc atcggtttag taagactaca
     3721 ataaaaaaac cagcccttag tggctggttt tttttattca tctcgcgatt gatctatgag
     3781 ctcatgatac ttctgtggct aattccgcaa gtttttggcc gacctcggcg cctatagcga
     3841 cgcccatccc tccaagacga accccacaat aaacatttgg ggcaagagta ttgacaatag
     3901 gttttttttg agggcccacg cccataattc cggaccaacg gcgctcaata ccaatcgcat
     3961 ggccagggaa gtctggtaaa attacctcgc gcaacatgcg ctctagagcc ccttgaattt
     4021 gttctgtggt ttgctctaag gtcgtttgct cgcctttaaa atcgaggttt cggccacctc
     4081 ctagcagtat gcgcccctca atatttctaa aataatagta gccctgatct aaatggaatg
     4141 tcccttcaat cttgaggtca ggaatcggcg ccgtaatcag tacttgagcc cgcgccgggg
     4201 tgaccaagtc cgaaaggtaa tcttgtgtat aaccgttggt ggcgagtaaa agtttttttg
     4261 tggtaattat tccgtgatct tgtgtttgca gcacaacttc acttgaattc gcagtatggg
     4321 aaatggcttt aacgccgccc agaaaatgaa cgccacagac agccgccttc agcgataggg
     4381 cctccataag tcgcccagtg tgaatctgtc cctcaaactt attcagaatg cctttgggcg
     4441 aaatcccaga aaaaccaaat cgattctcca ccggggtaaa aacatcctga gttgttttta
     4501 aagcctcttt tgcgagttga ttggcccaat caaggtgggt aaaacactgt tctgccaaag
     4561 cgccctggtg ccttaaaaaa tattcgtagc cgccgcgctc ttgatagtcc atggtctctg
     4621 gcgccacgat tgattttaag cgctgcagtc cctgagctct ttgacgaatt agtccgataa
     4681 gttcttgttc tgaatgacgt tgggcgtcat ctaaaatctc tgaaacactc ccaaaacaag
     4741 caaatcccgc gtttttaata ctggctcctg agggccaaat tcctcgttca attacaacga
     4801 cacgcgcctt aggatgttct gattttaatg taagggcaca ggtcagtccc acaataccgc
     4861 caccgacgat taggtagtcg atatccttaa gtaaatagga ttcccaatat gatctgtttt
     4921 ggcccatttt gaattaataa cccttcagcg ctaaataaaa taaccctccg ttcgggaggg
     4981 ttattaaact attactcttc cattttccat tcgttcataa aggccgtggt gtagtttccg
     5041 gcaacataat cggggtggtc cataagttgt ctgtgaaagg gtatggtggt ttttatgccc
     5101 tcgataacaa actcatccaa agcgcgcttc attttattaa tggcttcctc acgggtttga
     5161 gccgtggtga tcagctttgc gatcattgaa tcatagtttg gtggaattga ataccctgcg
     5221 taaacgtggg tgtctaagcg cactccgtga cctcctgggg cgtggagcgt ggtgatcttt
     5281 cctggcgagg gtcggaatcc attataggga tcctctgcgt tgatacgaca ctctattgaa
     5341 tgcagttgag gcaggtagtt ttttcctgaa atcggcacgc ctgctgcgac taaaatctgc
     5401 tctcggatca agtcgtgatc cactacttgt tctgtaattg ggtgttccac ctgaatacgg
     5461 gtgttcatct ccaagatcgg aagagcnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnatagaa gtttcggtgt ttatcgacca aaaactcaat agtccctgcg
     5641 ccctcataac ttatgaattc tgccgctttt accgctgctt ctcccatcgc atgccgcaat
     5701 tcatccgtca taaatgggct tggcgtttct tcagtaagct tttgatggcg tctttgaatt
     5761 gagcaatcgc gctcactcaa atgacaagct tttcctcgac tatcgccaat gacttgaatt
     5821 tctatgtgcc gtggctcttc gatcaacttt tccatataca tgtcgttgtt gccaaaagcc
     5881 gctttactct cttgtctggc ggattcccaa gcattctgta ggtcttcttc tttccaaacg
     5941 gcgcgcatcc cttttcctcc gcccccagca cttgctttga gcatgaccgg ataacccgtc
     6001 tcttttgcca cctttttaca ggtttcaaaa tccggaataa ttccatcact tccagggaca
     6061 cagggaacgc ctgcagcctt catcgtcgct ttggctgacg ctttgtctcc catttggtca
     6121 atcatcttgg ccgaagcccc gatgaacttg atgccatgtt cttcacaaat ctttgaaaac
     6181 ttagcgtttt cagacaaaaa tccgtaccca gggtggatcg catctgcatt ggtgatttcg
     6241 gccgcggcaa tgatgttggc tattttcaag tagctctctg aactcggtgc agggccaata
     6301 caaacggcct cgtcagcaaa ctttacgtgc aaactttcag cgtctgcagt agaataaact
     6361 gctaccgttt taatgcccat ttcnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnnnnn nngctaccgt tttaatgccc atttctttac aggttcgaat
     6541 caccctaagg gcgatctctc cgcgattggc gaccaatatt tttttaaaca tgctattttc
     6601 ttgggcctta ttcgggcctt tggttttttt tgacggcatg gtgctgcttt taaattaagc
     6661 tgggtcgatc aaaaataaag gctgatcaaa ttcaacaggc gatgaatcgt ctaccaaggc
     6721 ctttacaatt ttcccagaaa cctcactttc aatttcatta aacaacttca tggcttcaat
     6781 aacgcacaaa acgctgccag ggcttaccgt atccccaacc tcaacaaata ccgatttatc
     6841 cggtgaaggt tttctgtaaa atgtcccaat aattggcgac ttaacggtaa tgtatttatc
     6901 gttttctgct gcaggggctg ctgctgcagg tgaagattca gccacagggg ctgcagggga
     6961 cggcacaggc acttgcagtg ctgccggagc agcatgcatg accgtgtggg ttgctggata
     7021 aacagagg
//
LOCUS       DPUP01000089            3612 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_22648,
            whole genome shotgun sequence.
ACCESSION   DPUP01000089 DPUP01000000
VERSION     DPUP01000089.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3612)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..278
                     /locus_tag="DHV98_02985"
     CDS             <1..278
                     /locus_tag="DHV98_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010181618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HCK05336.1"
                     /translation="YRGHSMSDAQHYRTKDEVSKMQEQDPIMHVLNQIYQNKWASEKQ
                     IAEIDQRVKDRVAECEQFAEESPYPEKNVMYDTVYQQENYPFLPHKI"
     assembly_gap    329..480
                     /estimated_length=152
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <481..2082
                     /locus_tag="DHV98_02990"
     CDS             <481..2082
                     /locus_tag="DHV98_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010230537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex dihydrolipoamide
                     acetyltransferase"
                     /protein_id="HCK05337.1"
                     /translation="RLSDTMEEGTVATWLKKVGDTVKEGDILAEIETDKATMEFESFY
                     EGTLLHIGVAQGQTAEVDALLAIIGAAGEDISGLLSGQTTNTVAPETVVESTANDQGT
                     SASSSDLPDGVSVITMPRLSDTMEEGIVARWLKKEGDSVNEGDILAEIETDKATMEFE
                     SFYGGTLLKIGIQEGSSAKVDALLAILGPAGTDLSGVNLDQLGSGASKAEAPQAEAAT
                     VPTQEVIQSTKAVEAAPAPVVSSAMSSSAASADQGRRFVSPLARKLAEEKGINLAQVT
                     GTGEHGRIVKRDIEHFVPAAAGAPVFQSVGTEVFESLPNSQMRKTIAKRLGESKFTAP
                     HYYLTVELDMDHAMAARTAINAQDGVKISFNDMVVKACAMALRLHPKVNSQWHQQETR
                     IAKHIHMGVAVAVEDGLVVPVLKFADQMSFTQIGAAVKDLVGKARAKKLTPEEMQGST
                     FTVSNLGMFGIREFTSIINQPNSAILSVGAIVEKPVVKQGSIVVGHTMTVTLACDHRT
                     VDGATGAQFLQTLRQYIEQPVTMFA"
     gene            2150..2833
                     /locus_tag="DHV98_02995"
     CDS             2150..2833
                     /locus_tag="DHV98_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013996435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HCK05338.1"
                     /translation="MGKIVLITGASRGIGYALTSAFLEQGHHVVALSRNTKPLEKFAE
                     KSCHVFPLDLTQEEAFPQLVASIKKKFGRIDILIHNAGLLINKPFESLSSMEIEQIYR
                     VNVFGPMALTRVLLPLMGPSSHVVSISSMGGLNGTAKFPGLSAYSSSKGALTIWSEVM
                     AEEYKDRGPKFNTLAIGAVQTEMLAEAFPGYQAPLTPDEMAAFILEFALNGHRIFNGK
                     TLPASQSTP"
     gene            2851..3453
                     /locus_tag="DHV98_03000"
     CDS             2851..3453
                     /locus_tag="DHV98_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008613444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sprT domain-containing protein"
                     /protein_id="HCK05339.1"
                     /translation="MELIKLKAYVPEAALTQVLTLFDRENLRLEVVPSRVTRHGDYRQ
                     MPHGGHVITINHGENQYRFLLTLIHELAHFRAYTEFGRRIKPHGIQWKNTFRDMMFPF
                     LRPEVFPEPVLRPLALYLKNPKASSDSDLSLTLALKSFDPPSQKKYIFEIPEGRKFEI
                     QRGRIFIMGTKRAKRFMCTEVNGGRVYLFQPHVSVTLLDD"
BASE COUNT          979 a          717 c          853 g          911 t
ORIGIN      
        1 gttatcgcgg gcactctatg agtgatgcgc agcactatcg caccaaagat gaggtcagta
       61 aaatgcaaga acaagatccg atcatgcatg tattgaatca aatttatcag aataaatggg
      121 cctcagagaa acaaattgca gaaattgatc aaagggtaaa ggatagagta gcagagtgtg
      181 agcaatttgc cgaagaatct ccttatccag aaaaaaatgt gatgtacgat accgtatatc
      241 agcaagaaaa ttatccattt ttaccgcata aaatataaat tatggctgaa atcatcacaa
      301 tgccacgact cagtgatacc atggaagann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 cgactcagtg ataccatgga agaaggtact gtggcaactt ggttgaaaaa agtaggagat
      541 acggttaaag aaggtgatat acttgccgag attgaaaccg ataaggccac catggagttt
      601 gagtcttttt atgaaggaac cttacttcat attggggttg ctcaaggaca aaccgcagag
      661 gttgatgcac tacttgccat tataggcgcg gcaggtgaag atatttcagg ccttttatca
      721 ggtcagacga caaatacggt cgcaccggaa actgtcgtag agtcaaccgc aaacgatcag
      781 ggaacatccg cttcaagttc tgatttgccc gatggggttt cggtcatcac catgccgcga
      841 ctcagtgata ccatggaaga agggatagtg gctcgttggt taaaaaagga aggcgatagc
      901 gtgaatgagg gggatatatt ggctgaaatt gagaccgata aggcgaccat ggagtttgaa
      961 tctttctatg gcggaacctt actcaaaatt gggatccaag aaggttcttc tgccaaggta
     1021 gacgctttgt tggctatttt gggtcctgcg ggtacggatc tatcgggcgt gaacttggac
     1081 caattgggtt ctggggcatc aaaagctgaa gcgcctcagg ccgaagcagc gaccgtgccg
     1141 acacaggagg ttattcaatc tactaaggcc gtcgaagcgg cccctgcacc ggtcgtgtcc
     1201 tctgcaatga gcagcagtgc cgcgtctgca gaccaagggc gtcgctttgt gagcccgttg
     1261 gcgagaaagt tggccgaaga aaagggcatc aacctcgctc aagtgactgg gacgggagaa
     1321 catggacgta ttgtaaaaag agatattgaa cactttgttc ctgctgctgc aggggctcct
     1381 gtgtttcaaa gcgtgggtac cgaggtattc gaatcactac caaattctca gatgcgcaag
     1441 accattgcca agcgtttggg ggaatcaaaa tttacagcac cacactacta cttaaccgta
     1501 gagctcgata tggatcatgc catggcggct cgtacggcga tcaacgctca agatggcgtg
     1561 aagatttcct ttaatgatat ggtggtcaag gcttgtgcta tggccttgcg tttgcaccct
     1621 aaggtaaaca gccaatggca tcaacaagag acccgaattg ctaagcatat tcatatgggt
     1681 gtggccgtag cggtagaaga tggtttggtc gttcctgttc tgaaatttgc ggatcaaatg
     1741 agttttactc aaattggtgc tgcagtgaaa gatttagtgg gaaaagctag agccaaaaaa
     1801 ttgaccccag aggaaatgca gggcagtact tttacggttt ctaatttagg gatgtttggt
     1861 attcgcgaat ttacgtccat catcaatcaa cccaactcag caatcttatc tgttggggcc
     1921 atagtcgaaa aaccagtggt aaaacaaggc agtatcgttg tggggcacac gatgaccgtt
     1981 actttggcat gtgatcacag gacagtagat ggggccacag gagcacaatt cttacaaaca
     2041 ctgcgtcagt atattgaaca gccggtaacg atgtttgcct aaagcctaac tctaggtcct
     2101 ttcatgatac ttcggtccta agactgctga ttttttgtac ttttaaacta tgggaaaaat
     2161 tgttctaatc acaggggcca gtcgtggaat aggttatgcc ttgacttctg cttttttaga
     2221 gcagggccat catgtcgtag ccctttcacg caacacaaag ccattggaaa aattcgcaga
     2281 gaagtcgtgc catgttttcc ctttggatct aactcaggag gaagcttttc ctcagcttgt
     2341 ggcctctatc aaaaagaagt ttggccgcat tgatattctc attcacaacg ccggtttgct
     2401 cattaataag ccatttgagt ctttaagttc catggaaata gagcaaatct acagggtcaa
     2461 tgtatttggc cctatggcgc tcacgcgggt attattgcct ttgatgggtc cttcttccca
     2521 tgtcgtttcg atcagcagta tgggcgggct taacggtacg gcaaaatttc caggcctaag
     2581 cgcctacagc agtagcaaag gcgcacttac aatttggagt gaagtgatgg cagaggaata
     2641 caaggatcga gggccaaaat tcaatactct ggctattggt gcggtccaaa cagaaatgtt
     2701 ggcggaggcc tttcctggtt atcaggctcc gttaactccc gatgaaatgg ccgcatttat
     2761 tttagaattt gcccttaacg gtcaccgcat atttaatgga aaaacattgc ccgcctcaca
     2821 atccacacct tgagtgtaat ggcgctcact atggagttaa ttaagctaaa agcatatgta
     2881 cctgaagcgg ccttgactca agttttgacc ttatttgatc gagaaaactt aaggcttgaa
     2941 gtggtgccga gtcgggtaac gcgtcatggg gattatcgcc aaatgcctca cggaggtcat
     3001 gtcatcacga ttaatcatgg ggaaaatcag tatcgctttt tgttgacctt aattcatgag
     3061 ttagcgcatt ttcgcgccta taccgaattt ggtcgccgta ttaaacctca cggaattcag
     3121 tggaagaata cttttagaga catgatgttc ccatttttac gtcctgaagt ttttccggag
     3181 cccgtgctac ggcctttggc gctctattta aagaatccca aagccagcag tgattcggat
     3241 ttgtctttaa ctttggcctt aaagtctttt gatccaccga gtcaaaaaaa atatatcttt
     3301 gaaataccgg aaggtagaaa atttgagatt caaagggggc gtatatttat tatgggcacc
     3361 aagcgagcaa agcgttttat gtgcaccgaa gttaatggag gacgcgtata cctttttcaa
     3421 cctcatgttt ctgttacgtt attggacgac tgatattctg ggcattaacg atctaaccaa
     3481 agtgaccaaa gtcaccccgt attaagtatg aaaactgata attctaatcc agagggatcg
     3541 acctctgccg aagctggagc gatcaaaaga gatgcactgg gcttgtggac aaaaataaaa
     3601 gtattcctcg ta
//
LOCUS       DPUP01000090            2909 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14460,
            whole genome shotgun sequence.
ACCESSION   DPUP01000090 DPUP01000000
VERSION     DPUP01000090.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2909)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2909)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2909
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..313)
                     /locus_tag="DHV98_03005"
     CDS             complement(<1..313)
                     /locus_tag="DHV98_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009185197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="HCK05340.1"
                     /translation="MPHTNLTAALEPTIAHARHLNIPEDRLAVLKPLIDYVQSKIDQG
                     KEINLNFICTHNSRRSQFSQIWAQTAADYFGVPAKCYSGGVEVTAFNERAIASIKRSG
                     FK"
     gene            complement(341..811)
                     /locus_tag="DHV98_03010"
     CDS             complement(341..811)
                     /locus_tag="DHV98_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013185866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05341.1"
                     /translation="MNLSEIKSALFQVDEVIFTQPDGKRVPAHFHVTEVGTVEKHFID
                     CGGTERRESVVNFQLFTATDYDHRLSAQKLRSIIELSEQKLDMKNLPIEVEYQGDTIG
                     KYGLEFDNGVFMLTSTQTDCLAKDKCGIPEQKPRVRLSALQVKENACTPGSGCC"
     gene            complement(855..1190)
                     /locus_tag="DHV98_03015"
     CDS             complement(855..1190)
                     /locus_tag="DHV98_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020530411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05342.1"
                     /translation="MGVTKTDLFTEAQNEIALAAKAFAHPARVAIIQYLLRSDTCING
                     DLVQELGLAQATISQHLRELKDIGIIQGTIEGSRVNYCINQNRWTEIKGQFNEIFNQL
                     ELASSEDCC"
     gene            complement(1270..>1512)
                     /locus_tag="DHV98_03020"
     CDS             complement(1270..>1512)
                     /locus_tag="DHV98_03020"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05343.1"
                     /translation="RWGLADKRQLIGAAQFIAGIGVLVGFKSDLMLILSALFIMIMML
                     VAIMVRIKIKDNISDILPAIAYILLSMVILYEGICQ"
     assembly_gap    1513..1691
                     /estimated_length=179
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1692..2022)
                     /locus_tag="DHV98_03025"
     CDS             complement(<1692..2022)
                     /locus_tag="DHV98_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008507521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05344.1"
                     /translation="MEQISLIFQIALAISVYYVWIFRYHNVLSEFSQFGYSDVFRNFV
                     GAAKISLSALLIMGVCYDGVTLFAAMGMAVFMLGAQWTHLRVKNPFKQRMPSLILLLI
                     SLFIAAFH"
     gene            2151..2348
                     /locus_tag="DHV98_03030"
     CDS             2151..2348
                     /locus_tag="DHV98_03030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05345.1"
                     /translation="MYLSASLVGVYEIHLYPGMSSKSSKQTYLIHGEPQAQEILAEKI
                     FNEKGWFVSIPKLNDIVTLAF"
     gene            2500..>2909
                     /locus_tag="DHV98_03035"
     CDS             2500..>2909
                     /locus_tag="DHV98_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family peptidase"
                     /protein_id="HCK05346.1"
                     /translation="MKILSNYLLIFGMITLTLVGCKDNTKSLVDQEPIPGIILENMDT
                     LVSPTEDFYSYVNGNWMKTNTIPDDESRWGGFGVLRKSTRNDVLDILYTSKELGVYQE
                     GSDQHKALMLFESELDTVARNEAGVSPLMPLLEK"
BASE COUNT          846 a          558 c          497 g          829 t
ORIGIN      
        1 ctttaaaacc agatctttta attgaggcga tggctctttc gttaaatgca gtgacctcta
       61 ccccgcccga gtagcacttt gcaggtacac caaaataatc cgccgcagtt tgcgcccaaa
      121 tctgtgagaa ctgacttctt ctcgaattgt gcgtacagat aaaatttagg ttgatttctt
      181 tcccctggtc aatttttgat tgaacataat caatcagcgg cttgagcact gctaaacggt
      241 cttcaggaat atttaaatgt cgtgcatgag caatcgtagg ttcaagtgca gcagtcaaat
      301 ttgtgtgtgg catattcatg attttataat tctaaagaaa ttaacaacac cctgaaccag
      361 gagtacaggc gttttcctta acctgaagtg cagacagtct tactcttggc ttttgctccg
      421 gaatgccgca cttatctttt gccaaacaat ctgtttgggt acttgtcagc atgaacaccc
      481 cgttgtcaaa ttccaatccg tactttccaa tggtatctcc ttgatactcg acttcgatgg
      541 ggaggttttt catgtccaat ttctgctcag ataattcgat gatcgaacgc agtttctgtg
      601 cgcttaaacg gtgatcgtaa tccgtggccg tgaataattg aaaattcact acagattctc
      661 ttcgttctgt tcccccgcaa tcaataaaat gtttttcgac agtgcctact tcggtaacat
      721 gaaaatgagc tggcactcgt tttccgtcag gttgggtaaa tattacctca tcgacctgaa
      781 acaatgctga tttgatttct gataaattca tttccttttt tgttttttga tatagctaga
      841 taattctatg aattttaaca acaatcctcg gatgaagcca gctcaagctg attaaaaatt
      901 tcattaaact ggcctttgat ttctgtccag cgattttgat ttatgcaata gttcactcga
      961 gagccttcaa tcgtcccttg gataatacct atatccttta attctctcag atgctgactg
     1021 atggtagctt gcgctaggcc taactcctgc actagatctc cgttaataca ggtatcgctt
     1081 cgcagtagat attgaattat tgcgactcgc gccgggtggg caaacgcttt tgctgccaag
     1141 gctatttcat tttgtgcttc tgtgaacaaa tctgttttag tgacgcccat aaatcgtatt
     1201 attacattgc aatattacga taataaaaag tataatcatc atacgatcaa aaaataattg
     1261 cttgaaaaac tattggcaaa ttccttcgta gaggatgacc atcgacaaaa gtatgtacgc
     1321 gatggcgggc aaaatatcag aaatattatc tttaattttt atccttacca taatcgcaac
     1381 aagcatcatg atcatgataa aaagcgcgct taagatcagc attaaatcac ttttaaatcc
     1441 tacgagcaca ccaattcccg cgataaattg tgccgcacca attaattgac gtttatcggc
     1501 caatccccat cgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn naatgaaatg ctgcaataaa caaggatatc aaaagaagaa ttaaagaggg
     1741 catgcgctgt ttgaacggat ttttgaccct aagatgagtc cattgagcgc ccaacataaa
     1801 tactgccata cccatggcag caaaaagcgt tacgccgtca tagcaaaccc ccataatgag
     1861 gagtgccgac agtgatattt tcgcggcgcc cacaaaattt ctgaacacgt ccgaataacc
     1921 aaactgacta aattcactca gcacattatg gtatctaaag atccatacat agtatactga
     1981 aattgccaag gcaatctgaa aaattagaga aatctgttcc ataagatgat tttgattaaa
     2041 gttacaaatt atgtcaattc aaatgagtgg cgacacagaa atattccgaa atataattgc
     2101 acaagcacat ttgattgagg tttcttcaat ttacttctta gaataagaat atgtatcttt
     2161 cagcatcgct cgtcggcgta tatgaaatcc atttataccc cggaatgagc tctaaatctt
     2221 caaaacaaac gtatttaatc catggcgaac ctcaagccca agaaattctt gcagaaaaaa
     2281 tattcaatga aaagggatgg ttcgtatcaa ttccgaaact aaacgatatc gtcaccctag
     2341 ccttttaaaa tgtaaatatt cgcgagccat aaatttgcct ctttattttg attgcttatt
     2401 tttaaggcga ttaaagaatt ctaggttaaa atcacaggat tataattaac tgtgtaaccc
     2461 aaattaatct aaaactgtaa cctcattaag caccaaaata tgaaaatttt atcgaattac
     2521 cttttgattt ttggtatgat taccctcaca ctagtgggat gtaaggacaa cactaaaagc
     2581 cttgtagatc aagaaccgat tccgggcatt attctagaaa acatggatac tttggtaagt
     2641 ccaacagaag atttctacag ttatgttaat ggaaattgga tgaaaacaaa caccattccc
     2701 gatgatgagt cacgatgggg tggatttggt gttttgcgta agtctacgcg caatgatgtc
     2761 ttggacatcc tttatacctc caaagaatta ggcgtgtatc aagagggttc agatcagcat
     2821 aaagccttga tgttgtttga gtctgaattg gatactgtag cccgaaatga agcgggcgta
     2881 tctccattaa tgcccctatt agaaaaaat
//
LOCUS       DPUP01000091            8222 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8906,
            whole genome shotgun sequence.
ACCESSION   DPUP01000091 DPUP01000000
VERSION     DPUP01000091.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8222)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8222)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8222
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..282)
                     /locus_tag="DHV98_03040"
     CDS             complement(<1..282)
                     /locus_tag="DHV98_03040"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05347.1"
                     /translation="MFAAVFAFFGCQDQAQSQSKSVWVEQGILKTAQGPFFIKGVCYH
                     PVAIGQTKRSFERLSEDLKLMNDAGINTIRVYEPIDSEDVLDQIHQAGIS"
     gene            complement(325..1635)
                     /locus_tag="DHV98_03045"
     CDS             complement(325..1635)
                     /locus_tag="DHV98_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 17"
                     /protein_id="HCK05348.1"
                     /translation="MKSRIKLNPLSTRAVIGSFCHLLFVLALGLNLISCDLNQKQDKI
                     MHHKSASELLGNPDYPAMSYGGYRGLNRQEQPTIAQLKEDLLIMHAMGIRFLRTYNMQ
                     FPHASNLVKAIDELQKAQPDFEMYVMLGAWIDCQGAWTDAPDHAQEDYKANKAEIERA
                     VALTQKYPDIIKVIAVGNEAMVHWAASYFVGPKVILGWVNYLQGLKKKGDLPKELWVT
                     SSDNFASWGGGGPEYHNADLNDLIKAVDYLSVHTYPFHDTHYNPAFWQRDLNAVKAPN
                     EALMNDALAYSQNQFQQVANYLKDIGVEKPLHIGETGWASSSDGLYGPEGSRAADEYK
                     QALYYRLMRDWTQKANISCFFFEAFDEPWKSAANPSDSENHFGLFTADGHAKYALWPL
                     VDQGVFKGLTRAGQSIKKTYDGNEELLSEDVFVLGIETQPHSMQ"
     assembly_gap    1677..1807
                     /estimated_length=131
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1815..>2990)
                     /locus_tag="DHV98_03050"
     CDS             complement(1815..>2990)
                     /locus_tag="DHV98_03050"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05349.1"
                     /translation="LAEFIDLALAHLHHSIQANKRSDNLYHAYNLMTVAEHGVIEITH
                     LPEMLEGQVAALSSGYLDAKQSLEVLDALKASDLFREDQYSYVLYPNKSLPRFLKKNN
                     IAPEALASSTLLSQLVAVGNMEIVTQDCLGGHHFNGNFNNVNSLRTALAKLPQEYQML
                     VEQEGKHIEGLYESIFNHKAFTGRSGTFFGYEGLGSIYWHMVSKLRLAVFEVTKRAVS
                     AQENPSIVGRLYDHYFEINAGIGAHKSPELYGAFPTDPYSHTPGGKGAQQPGMTGQVK
                     EDLLCRFGELGVRVAEGKLGFDRALLPEGEYLKTPAQFKYVDVTHKSRVIELPEQSLA
                     YTICQVPVVYLRGDTPQIQVLLSDGTQETISGSTLNKTLSQAIFKRSHKVARVTVIG"
     assembly_gap    2991..3092
                     /estimated_length=102
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3093..5399)
                     /locus_tag="DHV98_03055"
     CDS             complement(<3093..5399)
                     /locus_tag="DHV98_03055"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05350.1"
                     /translation="MNSSKKNKEIYVGNQPHQYKKKEIKGTEISVDGQTYYKISNADQ
                     MRPFFMSLVSHSDHWMFISSTGGLSAGRIDSDHALFPYYTDDKITESYEYTGSKTLIL
                     VEREDRRILWEPFSTRYSGIYNIERNLYKNVYGNKLIFEEINHDLALNFQYEWSTSER
                     FGFVRQATLNSLASDNGNVSILDGIQNILPYGVPAGLQSGSSNLVDAYKKCELEPGNL
                     GIYALSAIISDKAEPSEALKANVVWSLGLNAPKVLLSAKQIDAFRAGGDLETEFDVKA
                     ERGAYFVSESFELTAGGQKKWCMVANLSQGMSDVIALKEALKKPEELYDELAQDIEKG
                     TEQLITLIAASDGLQLTADRRRNIRHFANTMFNVMRGGIFDENYKIDKADFMAYVDRA
                     NHKVFFKKEDQMTSWPEQFDLFFLQNAAKKDEDLNFQRLCVEYLPLKFSRRHGDPSRP
                     WNKFSINLRNEDDGSKILDYQGNWRDIFQNWEALAHAYPDFIEGMIYKFLNATTFDGY
                     NPYRVFKDGFEWETIEPDNPWSYIGYWGDHQIIYLLKFLEFLKAYYPEKLETYFADNS
                     FVYANVPYRIKPYTDLLKDPKNTIDFDHEREAKIEFKKQEIGGDGALLRETHVFIYKV
                     NFIEKIMATTLAKLANFIPEGGIWMNTQRPEWNDANNALVGNGVSMVTLYYLRRFLVF
                     FKDVLANTKHKEVAISDELLECYALMKATFTKYEEALSAPMTNQQRREILDGLGIPAS
                     DYRQKIYDEDFSGKKSGLRLSDLAEFIDL"
     gene            5887..6276
                     /locus_tag="DHV98_03060"
     CDS             5887..6276
                     /locus_tag="DHV98_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020082087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05351.1"
                     /translation="MEIIIPVMGMLTGIIIPLAVFIWQYKDAKGKRATVLEIAKNLDD
                     PSKVQELLNIFDERKKEPIDYRRNGVITLFVGIGLYFLGFFALGRILEGVGALVGLIG
                     IGTIIAGYLYPNTGKELSDAVEEYEKQ"
     gene            6280..6507
                     /locus_tag="DHV98_03065"
     CDS             6280..6507
                     /locus_tag="DHV98_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020032331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05352.1"
                     /translation="MGRNHEKLHNNLEEHRKASGYTQQDLSLAADVSRKSINAIENGI
                     YIPSTVLALKIAKTLNCTVEELFELPNLKKH"
     gene            complement(6523..7299)
                     /locus_tag="DHV98_03070"
     CDS             complement(6523..7299)
                     /locus_tag="DHV98_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HCK05353.1"
                     /translation="MELEVASLALLCILFLIIALIYSSVGFGGGSSYLALLALMSVSF
                     YAMRSLALVCNIVVVGGSVYWFLKNRHFKLSEFLPFVVTSVPMAFLGASYKLTEQVFF
                     LVLGIVLVLVALILFWQTTHLEVLEREPIKTYPNWINYFLGGSIGLLSGLVGIGGGIF
                     LAPVLYYLKWGPPTKIAALASFFILVNSISALSGLIYSDDFKISFGAAIFLGLSVFIG
                     GQLGVRYSFKNLSSKTIRRLTALLVLIVGVRVLLINALAL"
     gene            7363..>8222
                     /locus_tag="DHV98_03075"
     CDS             7363..>8222
                     /locus_tag="DHV98_03075"
                     /inference="COORDINATES: protein motif:HMM:PF03453.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdenumtransferase MoeA"
                     /protein_id="HCK05354.1"
                     /translation="MKNLIAVEEALALVLKNVKTTTETELISLDKAIGHVLAKDLYAP
                     ISLPPFRQSAMDGYALNYHHGNNFLVIGEVKAGDASRQILSKGQAVRIFTGAQVPKSA
                     NTVIKQELISKHGKSISVAGVIRLGSNIRPEGEQIQKNTLALNKGVILNASTIGFIAA
                     LGLVEIPVYKKPSVVIIVTGNELARGGQALKDGQIYESNAIMLKNALRSLGILSVDVL
                     EVKDNYQETQLVLNSTLNQYDFTLVSGGISVGDYDFVGRALDKLGIEQVFYKVKQKPG
                     QPLYFGRRNNL"
BASE COUNT         2401 a         1830 c         1494 g         2264 t
ORIGIN      
        1 actgattccc gcttgatgaa tttgatccag cacatcttcc gagtctatgg gctcatacac
       61 cctgatggta ttaatgcccg cgtcattcat gagttttaga tcctctgaca agcgctcaaa
      121 acttcgcttt gtttgtccaa tcgccacggg atgataacaa acccccttaa tgaaaaaagg
      181 gccctgagcg gtttttagta ttccttgctc tacccagacc gactttgatt gcgattgggc
      241 ctgatcctga caaccaaaaa acgcgaaaac cgcggcaaac aataaaatta tatgtgttct
      301 cttttctatc attaaattct tttgttactg cattgaatgg ggttgcgttt cgattcccag
      361 aacaaatacg tcttcactca acaattcctc atttccatca tacgtctttt taatggattg
      421 ccccgcacgg gttaatcctt taaaaacacc ctgatcaact aaaggccaca aggcatattt
      481 agcgtgacca tcggcggtaa acagaccaaa atgattctct gaatctgacg ggtttgcggc
      541 acttttccat ggctcatcaa aggcttcaaa aaagaaacaa cttatgtttg ccttttgagt
      601 ccaatcccgc attaagcggt aataaagcgc ctgcttatac tcgtctgccg ctctagaacc
      661 ctccggacca tagagcccat cggagctact ggcccagcct gtttcgccaa tatgcagtgg
      721 cttttctacc ccaatatcct tgagataatt agcgacttgc tgaaattgat tttgactgta
      781 ggctaatgca tcattcatga gcgcttcatt tggcgctttt accgcgttta aatctcgctg
      841 ccaaaaagca ggattgtaat gggtgtcatg aaatggataa gtatgcaccg agagatagtc
      901 tactgcctta attaagtcat tgagatcagc gttgtgatat tcagggcctc ctccgcccca
      961 agacgcaaaa ttatctgagc ttgtgaccca taattcttta ggcaaatcgc cctttttctt
     1021 taagccttga aggtaattta cccaacctaa aataacttta ggccccacaa aataagaggc
     1081 cgcccaatgg accatagcct cattgcccac cgcgattact ttaataatgt ccgggtattt
     1141 ttgggtgagc gccacggctc tttcaatctc tgccttattg gccttataat cttcttgagc
     1201 atgatcagga gcatcagtcc aagcgccttg gcaatcaatc catgccccca gcatgacgta
     1261 catttcaaaa tcgggttgtg ccttttgaag ttcatcaatg gccttaacca aattagaggc
     1321 gtgaggaaat tgcatgttat aggtccgtaa aaaccgaatg cccatggcat gcatgattaa
     1381 taaatcctct ttgagttgcg cgatagtcgg ttgctcttga cgattcaacc cacggtaacc
     1441 accgtaggac attgcagggt aatctggatt gcccaatagt tctgaagcac ttttatggtg
     1501 cataatttta tcttgttttt gattcaaatc acaggaaatt aagttcaatc ctaaggccaa
     1561 cacaaaaagc agatgacaaa acgagccgat gactgctcga gtagataaag gatttaattt
     1621 aattctagat ttcatcatta ttattctttt ctaatgcccc aaagtttaac caatcannnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnncca aagtttaacc aatcacggtc acccgagcca ctttatgact tcgtttaaaa
     1861 atggcctgac tcagcgtttt attcaaggtc gatccagaga tagtctcttg agtgccatca
     1921 ctcagaagca cttggatctg tggggtgtct ccacgtaaat aaaccacggg tacttgacaa
     1981 atcgtgtaag ccaaactctg ctcaggtaat tcgatgactc tgctcttatg agtcacgtct
     2041 acatatttaa attgtgccgg ggtttttaga tattccccct caggaagcag tgctcgatca
     2101 aagcccagtt ttccctcggc cacacgcacc ccaagttctc caaaacgaca aagtaaatct
     2161 tctttaactt gtcccgtcat tcccggttgc tgtgcccctt ttccaccggg tgtatgtgaa
     2221 tacggatccg tagggaatgc cccgtataac tcgggcgact tatgcgcccc aatacccgca
     2281 ttaatttcaa aataatgatc atataagcgc cccacaattg aaggattctc ttgagcagaa
     2341 acagcgcgtt tggtcacttc aaaaaccgcc aagcgcagct tagaaaccat gtgccaatag
     2401 atcgacccaa ggccctcgta tccaaaaaag gttccagatc gaccggtaaa tgctttgtga
     2461 ttgaatatgc tttcgtatag cccttcaata tgcttcccct cttgctccac gagcatttga
     2521 tactcctgag gtaattttgc cagggccgtt ctcaaggagt ttacattatt aaagtttccg
     2581 ttaaaatgat gtccgccaag acagtcctga gtaacaatct ccatattgcc taccgctaca
     2641 agttgtgata aaagcgtaga actcgccaaa gcctcagggg cgatattatt ctttttcaga
     2701 aaacgaggca aacttttgtt tggatataac acgtaactgt actgatcttc tctgaacaaa
     2761 tcactggcct ttaaggcatc taaaacttcc aggctttgct ttgcatcgag gtatccagag
     2821 cttaaggccg caacttgccc ttccaacatt tcaggcaaat gggtgatttc aatcactccg
     2881 tgctcagcaa cggtcatgag attataggcg tggtacaaat tatccgagcg tttgttcgcc
     2941 tgaattgaat gatgcaaatg cgctagagcc aagtcaataa attcagccaa nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncaagtcaa taaattcagc caaatcactt
     3121 aaccggagtc ccgacttctt gcctgaaaaa tcctcatcat aaatcttttg acggtaatca
     3181 cttgcgggaa tacccagtcc atccaaaatt tcccgtctct gttgattcgt cattggtgca
     3241 gaaagtgctt cttcgtattt cgtaaaggtc gctttcatca gtgcataaca ctccagtaat
     3301 tcatctgaaa tagcgacctc cttatgcttc gtatttgcca agacgtcttt aaaaaacacc
     3361 agaaaacgac gcaaataata aagagtcacc atagaaacac cattacccac cagcgcatta
     3421 ttggcatcgt tccactcagg tcgctgggta ttcatccaaa tacccccctc aggaataaaa
     3481 ttggccaatt tggccaaagt ggtcgccatt attttttcaa taaaattgac cttgtaaata
     3541 aagacatgtg tttctctgag caaagccccg tcgccgccaa tttcttgttt tttgaattca
     3601 atttttgcct cgcgctcatg atcaaaatct atggtgtttt ttgggtcctt aagaagatcc
     3661 gtatagggct taatccggta aggtacattg gcgtaaacaa atgaattatc cgcaaaataa
     3721 gtttcgagtt tctctggata ataggccttt aaaaactcta agaattttaa gagatagatg
     3781 atttgatgat cgccccagta cccgatataa gaccaaggat tgtctggctc aatagtttcc
     3841 cattcaaaac catctttaaa gacgcgataa ggattataac catcgaaggt ggttgcattg
     3901 agaaatttat aaatcatacc ctcaataaaa tcaggataag catgagctaa agcctcccaa
     3961 ttttggaaga tatcccgcca atttccttga tagtccaata ttttcgaccc atcatcttca
     4021 ttacgcaggt ttatagaaaa cttattccat ggacgacttg gatccccatg acggcgacta
     4081 aatttcaagg gcaaatactc cacgcacaac cgctgaaagt tcaaatcctc atcttttttg
     4141 gcagcattct gcaagaaaaa caaatcaaat tgttctggcc aagaagtcat ttgatcttcc
     4201 tttttaaaga aaaccttatg attggcgcgg tcaacatagg ccataaaatc agccttgtct
     4261 attttataat tttcatcaaa aataccacca cgcatcacat taaacatggt attggcaaaa
     4321 tgacgaatgt tgcgacgacg atcggccgtg agctgtaatc catcacttgc agcaatgagg
     4381 gtaattaact gctcggttcc tttttcgata tcctgagcca attcatcgta taattcttct
     4441 ggttttttta aggcctcttt aagggcaatc acatcactca ttccttggct caggttagcc
     4501 accatacacc attttttctg acccccggca gttaattcaa aagattcaga aacaaaataa
     4561 gccccgcgtt ccgctttaac atcaaattcg gtttctaaat caccccccgc tcgaaatgca
     4621 tcaatttgtt tggctgataa caatactttg ggcgcattga ggcccaaaga ccatacgaca
     4681 ttcgccttta gcgcctcact gggctcggct ttatctgaaa ttattgcact cagcgcatag
     4741 atccccaagt ttcctggctc gagctcacac tttttatacg catctaccaa attactgctc
     4801 cctgattgga gccctgcagg aaccccatag ggtaaaatat tttgaattcc gtcaagaata
     4861 ctgacgttac cattgtccga cgccaatgaa ttcaacgtcg cctgacgaac aaaaccaaat
     4921 cgctcacttg ttgaccactc gtattgaaaa ttcagcgcca agtcatgatt gatctcctca
     4981 aaaatgagtt tattgccata aacgttcttg tataagttac gctcaatgtt ataaatccct
     5041 gaatacctcg tggaaaatgg ctcccacaat attcgccggt cctcacgttc gaccaagatc
     5101 aaggttttac tccccgtata ttcataagac tctgtgatct tatcatccgt gtaatacgga
     5161 aaaagggcgt gatcactatc aatgcgtcca gccgaaagac ctcctgtact cgagatgaac
     5221 atccagtgat ctgaatgact cactaaactc ataaaaaacg gacgcatctg atcggcgttg
     5281 cttattttgt aataggtttg gccgtcgact gagatttctg ttccttttat ttcctttttt
     5341 ttatattgat gaggttgatt ccctacgtat atctctttat tttttttact ggaattcatt
     5401 gcaatttttg gtctttgtta aataatgttt tgctcgccat tttcatcgat gtgaaatggg
     5461 cacataatgt ggtcaaaata gcataaattc agggcttggc gaaataaaaa aactatacaa
     5521 taagtataca aatgctacaa ccagcaaaaa taatcttgcg ttagccataa atggaaagac
     5581 tccaaattac tgattttaag tattttataa aattactttg gctttccaaa aaaatgagct
     5641 tcttttttat gactacaact caggctacag cagtaatttt tttgacctta atttaacata
     5701 gtggtctcaa tacagtccca tgtgaattaa tgccccttat ctggtccttc ttgcgaagcc
     5761 atttaatcag cgggccttgg tctattgcgc aaaatttgat tatttttttg taacctttgc
     5821 ttcccattta aaaaaaatat gttacgtttg cgttacattt aaaatcaacc tatcatgcaa
     5881 aaccaaattg aaatcatcat ccctgtaatg ggaatgctta ctggaatcat tatccctctt
     5941 gccgttttta tttggcaata taaagacgct aaggggaaga gagcaactgt tcttgaaatt
     6001 gcgaaaaatc tggacgaccc ctctaaagtt caggaattac tgaacatatt tgatgaacgt
     6061 aaaaaagaac ctattgacta cagaagaaat ggcgtgatta ccttgttcgt tggtattggc
     6121 ctctattttt tgggcttttt cgccttgggc agaattcttg aaggagtcgg tgcccttgta
     6181 ggacttatcg gtattggtac aattatagcg ggctacctct atccaaatac aggaaaagaa
     6241 ctcagcgatg cggttgagga atatgaaaag caatagattt tgggacgcaa tcacgaaaaa
     6301 cttcacaata atttagaaga acatcgcaaa gcctcaggat acacacaaca agatttatcc
     6361 ctagctgccg atgtttctcg caaaagtatt aacgctattg aaaacggcat ctatatcccc
     6421 tctacggtat tggctctaaa aattgccaaa accttgaact gtaccgtaga ggagttattc
     6481 gaattgccaa atcttaaaaa acactaaacc ataattcgcc gatcaaaggg ccagtgcatt
     6541 aatcagtaaa acacgaaccc ccacgatcaa gaccagcagt gcggttaatc gtcttattgt
     6601 tttggaggat aggtttttaa aactataacg aacccctagt tggcctccga taaatacaga
     6661 aagcccaaga aaaatggctg ccccaaacga aatcttaaaa tcatccgagt aaataagtcc
     6721 acttagggct gagatcgagt tgaccagtat aaaaaaactg gctaaggccg ctatttttgt
     6781 aggcggcccc catttcaagt aatagagcac gggcgcgaga aaaatacccc cacctatacc
     6841 cacaagcccg gataataaac cgatactgcc cccaagaaaa tagtttatcc aattcgggta
     6901 agtctttata ggctctcttt ccaagacctc caaatgcgtg gtttgccaaa agagaatcaa
     6961 tgccactagg accaaaacta ttcccagcac taaaaaaaat acctgctcgg taagcttata
     7021 agacgcccca agaaaagcca taggaacact ggtcacaaca aacggcaaaa actcagataa
     7081 tttaaaatgt ctgtttttca aaaaccaata gacactccct cctaccacaa caatattaca
     7141 caccaacgcc aatgagcgca tggcataaaa ggagaccgac attaaagcaa gaagagccaa
     7201 atagctggaa ccgccgccga agcctaccga agaatagatt aaggcaatga ttaaaaaaag
     7261 aatacacaaa agcgctagac ttgctacctc aagttccatt tattgtatcg ctgatttccc
     7321 tctacttatt gaaatagatt tcgttatatt tgagtgaata taatgaaaaa tttgattgct
     7381 gtagaagaag ccctagcgtt ggttttgaag aatgtaaaaa ccacaaccga aacagaactt
     7441 atttctttgg acaaagcaat aggccatgtt ctggcaaagg atctctatgc ccccattagt
     7501 ctgcccccgt ttcgacaatc tgccatggac gggtatgcgc tgaattatca tcacggcaat
     7561 aattttttag tcattgggga ggtgaaagcc ggtgatgcct cgagacaaat cttatccaaa
     7621 ggacaagccg ttcgcatttt taccggcgcc caggtaccca aatcggctaa tacagtaatc
     7681 aaacaagaac taatttccaa acatggaaaa tcaatttctg tagcgggggt cattaggctt
     7741 gggagcaata ttcgcccaga aggagagcag attcaaaaaa acaccctcgc tttaaacaaa
     7801 ggggttattt taaacgccag tactattggt tttatagccg cattaggctt agtcgaaatt
     7861 cccgtataca aaaaaccgtc ggtggtcata atcgttacag gcaatgaatt agcacgtggt
     7921 ggacaagccc taaaagacgg ccaaatctat gagagtaatg ccataatgtt gaaaaatgcg
     7981 ctaaggagtt tagggattct ctcagttgat gtgctcgaag ttaaggacaa ttaccaagag
     8041 acccagcttg ttttaaacag taccctgaat cagtacgatt tcactttagt ttccggaggt
     8101 atttcggtag gagattatga ctttgtgggt cgtgccttag ataagcttgg gattgaacaa
     8161 gtcttttata aagtaaaaca aaagcccggt caacccttat attttggtcg cagaaacaat
     8221 ct
//
LOCUS       DPUP01000092            4773 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1918,
            whole genome shotgun sequence.
ACCESSION   DPUP01000092 DPUP01000000
VERSION     DPUP01000092.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4773)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4773)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4773
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..344
                     /locus_tag="DHV98_03080"
     CDS             <1..344
                     /locus_tag="DHV98_03080"
                     /inference="COORDINATES: protein motif:HMM:PF01738.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dienelactone hydrolase"
                     /protein_id="HCK05355.1"
                     /translation="CMGGGWSLQSALLAESRSMGCVMYYGMPEKDIERLKTLNGPVLF
                     VFANRDKWINRDVVEGFQKDMNKADRSLEILEFDADHAFANPSNLSYNEQAAEEAYTA
                     SLTFLQNALSN"
     gene            complement(341..658)
                     /gene="trxA"
                     /locus_tag="DHV98_03085"
     CDS             complement(341..658)
                     /gene="trxA"
                     /locus_tag="DHV98_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008199777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HCK05356.1"
                     /translation="MTTQKTSFGDLINGDKPVLVDFSAEWCGPCKMMAPILKELAAKM
                     GERIRIIKIDVDRNPAIAGKYQIQGVPTLILFERGNIRWRESGVRSASDLQKIMESHL
                     VAG"
     gene            complement(734..1675)
                     /locus_tag="DHV98_03090"
     CDS             complement(734..1675)
                     /locus_tag="DHV98_03090"
                     /inference="COORDINATES: protein motif:HMM:PF00248.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCK05357.1"
                     /translation="MKHHMIYGCMGLGGGWNRDPLQPEDEQKAFRAIETALESGYTRF
                     DHADIYTFGKAEEVFGRYLQQHPGLRKDLFIQTKAGIIIGGGYNGSNHYNLSSEYLLE
                     QAAQSLHRLQAEYLDVFLLHRPDPLLHPDEIAKAFATMKERGWARNFGVSNCSYGLFE
                     RLEAACSFPLICNQVQFSLGHSHLLDAMVDWNTGGAAKAFTGAGDTPLLWHEGLELQA
                     WSASDRGRFTVAPESAANADDKNVIELVARLAAKYDVQPIAIILAWVLQSGRNIQPVF
                     GSTHPERIRASAAASSIQLTRAEWYDLWIAARGKSLP"
     gene            1759..2310
                     /locus_tag="DHV98_03095"
     CDS             1759..2310
                     /locus_tag="DHV98_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017258738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HCK05358.1"
                     /translation="MQSRVILDSTKFALTIERLCHQLIENHGDFSNSCIIGLQPRGVF
                     LSNRIVQRLEILLGGKRPLYGLLDATFHRDDFRRTEKPLVPGKTVIDFPIEGKRVILI
                     DDVFYTGRTVRSGLDALLDFGRPAAIELLVLVDRRYSRHVPISPDYTGKTIDAVMYEK
                     VRVEWTENGGKDEVWIIPFKMVS"
     gene            2307..3233
                     /locus_tag="DHV98_03100"
     CDS             2307..3233
                     /locus_tag="DHV98_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013752344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HCK05359.1"
                     /translation="MSSLSVRHLISIKDLQTEDLQLIFNTADQFKEILNRPIKKVPSL
                     RDITIANIFFENSTRTRLSFELAEKRLSADVVNFSAASSSVKKGETLIDTVNNILAMK
                     VDMVVMRHPNPGAAIFLSKHVNARIVNAGDGAHEHPTQALLDAYSIRESLGSVAGKKV
                     AIVGDILHSRVALSNIFALKKLGAEVKLCGPKTLIPKHIESLGVSYEPSLEKTIQWCD
                     AVNMLRVQNERMSMSYFPTTREYAQQYGLTLDHLKALDKQIIVMHPGPINRGVEITSA
                     VADHPQAIILDQVQNGVAIRMAVIYLLAAKIK"
     gene            3234..3566
                     /locus_tag="DHV98_03105"
     CDS             3234..3566
                     /locus_tag="DHV98_03105"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05360.1"
                     /translation="MEFSVKNQVVFIGKISDQVDDLAKQLLDNKAHWQDYHVILDCQE
                     CSWSSESVYQAVRPIFRDHKAQQKSFVLVDKVDRLKNYPEDLSAAPTQEEAFDLIEME
                     EIERDLGF"
     gene            3575..4513
                     /locus_tag="DHV98_03110"
     CDS             3575..4513
                     /locus_tag="DHV98_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008638523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HCK05361.1"
                     /translation="MRLHILGCHSATPKANAQPSAQLLELDGQMYLIDCGEGTQVALR
                     KNKIKFARIKQIFISHLHGDHYFGLFGLIATFNLLGRSEPLDIFGPKGLKEIVLLSLK
                     LGGTWTKFPLHFHELNQKESVLIHEDHIVTVKTLPLDHRVYTNGFLFTQKPKLRPLNA
                     QAALTFKVPSAYFNKAKQGQWVQDELGKPVDFRAITLDPPEPITYAYCSDTAFYPPLA
                     DLIRGVRLLYHESTFLSQHEHLCATTKHSSARQAAEMAVTAGVKFLVLGHYSGRYKDL
                     ADFKSEASGVFARTYLARENALFTLEDGSQMELTEI"
     gene            4568..>4773
                     /locus_tag="DHV98_03115"
     CDS             4568..>4773
                     /locus_tag="DHV98_03115"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HCK05362.1"
                     /translation="MSQNLHSYRKSYQKGALRKQDAAADPFDQFTLWFEALKSLELDI
                     EINAMHCTTLDADGFPRTRVVLLK"
BASE COUNT         1280 a         1100 c         1121 g         1272 t
ORIGIN      
        1 ggtgtatggg cggtggctgg agcctgcagt cagcattgct ggcggagagc cgttccatgg
       61 gttgtgttat gtattacgga atgcctgaaa aagacatcga acgcttgaaa accctgaatg
      121 gcccggtgct gttcgtattt gctaacaggg acaagtggat caatcgagat gtggtggaag
      181 gttttcaaaa agacatgaac aaagccgacc gttctctgga aattttggaa ttcgatgcag
      241 atcacgcctt tgccaatccc agcaatctga gctacaacga gcaggccgcc gaagaagcgt
      301 ataccgcatc cctcaccttt ctccaaaatg ccttgagcaa ttagcctgct accagatggc
      361 tttccattat tttttgcagg tcagatgctg accttacgcc ggattccctc cacctgatat
      421 ttcctctttc aaaaaggata agggtcggga cgccttgtat ctgatactta ccagcgatgg
      481 caggattgcg gtcaacatct atcttgataa tccgtatacg ttctcccatt tttgcagcca
      541 gttccttgag gatgggtgcc atcattttgc agggcccgca ccactctgcc gagaaatcga
      601 caagtaccgg tttatcgcca tttatcaaat cgccgaaaga agttttttgt gttgtcatat
      661 ctgtctgttg gttataactc caggacacaa aattccgttc ccccgggaaa taaatgggta
      721 accaaaatca ccatcagggt aaggattttc ctctggcagc tatccacagg tcataccact
      781 ccgctctcgt cagctgaatg ctacttgcag ctgcgctggc gcgaatgcgc tccggatggg
      841 tagagccaaa taccggctgg atatttcgcc cgctctgtag gacccaagcc aggataatag
      901 caatgggctg cacgtcgtac tttgcagcta aacgcgctac cagctcaatg acgtttttgt
      961 cgtcggcatt ggcagctgat tccggcgcca cggtaaatct gccccggtca gaagcactcc
     1021 aggcttgtaa ttccaatcct tcgtgccaaa gtaaaggcgt atcaccggct ccggtaaaag
     1081 ccttagcagc ccctccggta ttccagtcta ccatggcatc caaaaggtgg gaatgtccca
     1141 gactgaattg cacctgattg catatcaggg ggaaggaaca agcagcttcg aggcgctcga
     1201 aaagtccgta ggaacaattg cttacaccaa agttgcgtgc ccatcccctt tctttcatag
     1261 tggcgaatgc cttcgctatt tcatccgggt gcaggagcgg atccggccgg tgcaacaaaa
     1321 aaacatccag gtattctgcc tgcagtcggt gcaaactttg ggctgcctgc tccagaaggt
     1381 actcactgct gagattatag tggttgctac cgttgtaacc gccaccgata attatccccg
     1441 ccttggtctg gatgaacaaa tccttccgca ggccgggatg ctgctgcagg tagcgcccga
     1501 atacctcttc tgccttgcca aaagtgtaga tatctgcatg gtcaaaacgg gtatagcccg
     1561 actccagtgc cgtctcaatg gcacgaaacg ctttttgttc gtcttccggt tgcaggggat
     1621 cgcggttcca gcctcctcct aatcccatgc atccgtaaat catatggtgt ttcatgcatt
     1681 aaaggtaagc gacccacttt aaccctttgc aataattgtt tttcatgtgt gggttatttt
     1741 tccgaaattt gagccttgat gcaaagccgt gtcatcctcg acagtaccaa attcgccctg
     1801 actattgaaa ggctttgtca tcagttgatt gaaaaccacg gcgatttctc caattcctgc
     1861 atcatcggat tacaacccag aggcgtattt ctctcgaaca ggattgtgca gcggctcgaa
     1921 atattgctgg gcgggaaacg ccccctctat ggcttgctcg atgccacctt ccaccgcgat
     1981 gatttccgcc gcacagagaa accgcttgtt cccggaaaaa cagttatcga tttccctatt
     2041 gaaggcaaac gcgtgatcct gatagatgat gtattctata caggaaggac agtgcgttcg
     2101 gggttagatg cccttctcga cttcggcaga cctgcggcca tagaactatt ggtgctggtc
     2161 gaccgacgct acagcagaca tgtacctatc tcgcccgatt ataccggcaa aaccatagat
     2221 gcggtgatgt atgaaaaggt aagagtagaa tggacagaaa atggtggtaa ggacgaagtt
     2281 tggatcatcc cttttaaaat ggtttcatga gcagtctcag cgtaaggcat ctgatttcca
     2341 tcaaagacct tcaaacagaa gaccttcaat taattttcaa taccgccgac cagtttaagg
     2401 aaatcctgaa ccgacctatc aagaaagtac cttccttaag agatataaca attgctaata
     2461 tattttttga aaacagcacg cgcacgagat tatcctttga actcgccgaa aaacgacttt
     2521 cggctgatgt ggtgaatttc tctgcagcct cctcatcagt aaaaaaaggg gagaccttga
     2581 tcgatacggt aaacaatatc ctggccatga aggtggatat ggtggtgatg cgccatccta
     2641 accctggcgc ggcaatattt ctatctaagc atgtcaatgc tcggattgtc aatgccggtg
     2701 atggagccca tgagcatccc acacaagcct tgcttgatgc ctattcgatt cgtgaatctc
     2761 tcggctcggt ggcgggtaaa aaagtggcca tagtcggtga tattttgcat tctcgtgtgg
     2821 ctttatccaa tatttttgcc cttaaaaaac tgggtgcaga ggtaaaactt tgtggtccta
     2881 aaactttaat tccaaaacat attgagtctc tgggagtgag ctatgaacct tcattagaga
     2941 aaacgattca atggtgtgat gcggtaaata tgctcagggt acagaatgaa cgaatgtcca
     3001 tgagttattt cccaacaaca cgcgaatatg cgcagcagta tggcttgact ttagatcatt
     3061 taaaggcttt ggacaaacaa ataattgtga tgcacccggg accaatcaat cgtggcgttg
     3121 aaattaccag tgcggttgca gaccacccac aagcgataat actggatcag gtacaaaacg
     3181 gagtggctat tcgtatggct gttatttact tacttgcggc taagatcaaa tagatggagt
     3241 tttcggtaaa aaaccaggtt gttttcatcg gtaaaatatc cgatcaagtt gatgatttag
     3301 caaagcagct tctggacaat aaggcgcact ggcaagatta ccatgtgatt ttggattgtc
     3361 aagagtgttc ttggtcatca gagtcggttt accaggctgt gcggccaata tttcgtgatc
     3421 acaaggcaca gcaaaaatct tttgtactcg tagataaggt ggatcgatta aaaaattacc
     3481 cggaagacct ttccgcagca ccgacccaag aggaagcttt tgatcttatt gaaatggagg
     3541 agatcgagcg ggatttaggg ttttaattat gggtctgcgc ttgcatatat tgggatgcca
     3601 ctcggcaaca ccaaaagcaa atgcgcaacc aagcgcccag ctccttgaat tggatgggca
     3661 gatgtatttg attgattgcg gggagggaac tcaagtcgca ctgcgcaaaa acaaaatcaa
     3721 atttgcccga atcaagcaga tctttatttc tcacctgcac ggcgatcatt attttggatt
     3781 atttggtctg attgccacat tcaatctttt agggcggagt gagccgttgg atatattcgg
     3841 cccaaagggt ttaaaagaaa tcgtgttgtt atccttgaaa ttgggaggaa catggactaa
     3901 attcccccta cattttcacg aattaaatca gaaagagagt gtattaattc atgaagatca
     3961 tatcgttacg gttaaaacct taccactaga tcatcgtgta tacactaatg gattcttatt
     4021 cacacaaaaa cctaaattgc gtcccttgaa tgcccaagcc gctctgactt ttaaggttcc
     4081 ctcggcttat ttcaataaag ctaagcaagg ccagtgggtt caggatgaat taggcaagcc
     4141 cgtggatttt agggccatca ccctagatcc tcccgagccg attacgtatg cttattgcag
     4201 tgacacggcg ttttatcctc ctttggcaga tttaattcgc ggagtgcgtt tattgtatca
     4261 cgaaagcaca tttttaagtc agcatgagca tttgtgcgcc accaccaaac acagcagtgc
     4321 cagacaagcc gctgagatgg cggtcaccgc aggagtaaaa tttttagtgc tcggacatta
     4381 ctcggggcgg tataaggatt tggcggactt taaaagcgag gcgagcgggg tatttgcgcg
     4441 aacttatttg gcgcgtgaaa atgccctatt tactttggaa gacgggagcc aaatggaatt
     4501 aactgaaatt taattaggcg tctctacaaa ctgtttaaaa tctcgtaaat tgcaagcaaa
     4561 taagggtatg tcacaaaatc ttcattctta tcgaaagtcc tatcagaagg gagctttgcg
     4621 caaacaagat gccgcggcgg atccctttga tcaatttaca ctttggtttg aggcgcttaa
     4681 gtccctagaa ttagatattg agattaacgc catgcattgc acgacattag atgcagatgg
     4741 atttcccaga actcgagtgg ttctcttaaa aag
//
LOCUS       DPUP01000093            6029 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16534,
            whole genome shotgun sequence.
ACCESSION   DPUP01000093 DPUP01000000
VERSION     DPUP01000093.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6029)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6029)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6029
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1172)
                     /locus_tag="DHV98_03120"
     CDS             complement(<1..1172)
                     /locus_tag="DHV98_03120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photolyase"
                     /protein_id="HCK05363.1"
                     /translation="MNDSKQRQRPEVNIFWFRRDLRLKDNHGLSKALRGSYPVVPLFV
                     FDRNILDSCAPDDGRVSFIHEQISQIKEELKSWGGDLKVHYGTAEQAIKELQQEFDVK
                     HLICNRDYEPYALTRDLAIKRLCEEHNIGFHQFKDQVIFEMDEIVKDDGKPYVVYTPY
                     SKKWLKALETNPLTEYPVEKHKANLPPGDLGAMPTLEYMGFKPSAHRVLPYDYSPVMA
                     QNYQGQRNFPGLTKGTSKLSPHLRFGSVSVRQIVRALLPIEDITLLKELIWREFFMQI
                     LWHFPHTVTKSFKPQYDRISWRNDPKEFEAWKNGQTGYPLVDAGMRELNTTGYMHNRV
                     RMLVASFLCKHLLIDWRWGEAYFAEKLLDYECSSNVGNWQWAAGSGVDAAPYFRIF"
     assembly_gap    1193..1284
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1316..2008)
                     /locus_tag="DHV98_03125"
     CDS             complement(1316..2008)
                     /locus_tag="DHV98_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008257749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCK05364.1"
                     /translation="MKNILIIGGSTGISAAVAQLCIDNGHTVYTACRNRPEVTGVHHI
                     PFDVLNPEASMDGLPDQIDGFVYAPGSINLRPFRALKPEAFATDFEINTMGMIRSLQN
                     VLPKLLNSPQASIVTYSTVAVQQGMPFHASVAVAKGALEGLTRSLAAEYAPKLRVNAI
                     APSLTNTPLAGKLLSSEEKIEKMNERHPLKRVGTPQDIAQCTYFLLSDASSWMTGQII
                     GLDGGMGALKLN"
     gene            complement(2005..>2330)
                     /locus_tag="DHV98_03130"
     CDS             complement(2005..>2330)
                     /locus_tag="DHV98_03130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division inhibitor"
                     /protein_id="HCK05365.1"
                     /translation="RMYPGQIIEYRVSPLLGIKTKWVTEITHVVPNEYFVDEQRFGPY
                     TLWHHKHFFSAIENGVAMEDLIHYKAPMGALGSLFTPLIVTPKLEEIFNYRTQKLTEM
                     FGSYS"
     assembly_gap    2331..2460
                     /estimated_length=130
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2461..2616)
                     /locus_tag="DHV98_03135"
     CDS             complement(<2461..2616)
                     /locus_tag="DHV98_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor"
                     /protein_id="HCK05366.1"
                     /translation="MILYTFHRTQKLPITLEQAWDFFSDPKNLKTITPEYMGFDIIAG
                     ADRRMYPG"
     gene            2743..3588
                     /locus_tag="DHV98_03140"
     CDS             2743..3588
                     /locus_tag="DHV98_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoamide dehydrogenase"
                     /protein_id="HCK05367.1"
                     /translation="MKKLIFSFLLSVACSFGALAQIQTPAASPEQTLTQSVGLSSVTV
                     QYSRPAMRGRTIFGDLVPLDKLWRTGANKNTLVTFESDATVGGSPLKAGTYALYTVPS
                     KDEWTVYFYTDTENWGLPKPWDENKIAAVYNVKAQSLDTSVESFTITIDKVTDSGAHL
                     TLSWENMSVAIPFGFDTVSAVMQTIERTMNGPAAGDYYQAAVYFLNADKDINKAKTWI
                     DKAIAMSEKPAYWYYRQKALIYAKSGDKKGAIAAAERSMELAQAAGSQDYVAMNKKSL
                     AEWTK"
     gene            complement(3601..>3954)
                     /locus_tag="DHV98_03145"
     CDS             complement(3601..>3954)
                     /locus_tag="DHV98_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCK05368.1"
                     /translation="IILETKPQDAARLDVIYNFVSQSFTRPISLTEMADKVSMTPQAF
                     SRYFKNKTGKTFVQFVTEYRVIHACKLLAEGSLSITDVCFESGFNNFSHFNKTFKSQT
                     GKSPSHYRNELRQIL"
     assembly_gap    3955..4109
                     /estimated_length=155
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4110..4647)
                     /locus_tag="DHV98_03150"
     CDS             complement(<4110..4647)
                     /locus_tag="DHV98_03150"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HCK05369.1"
                     /translation="MKKNPQFEAIAPAPGSSLYIENLRDFNAANPSSWHYHPEMEIVY
                     INGGSGKRHIGNHISYYNDGDLIFIGASLPHFGFTNHLTNNKSEIVIQAREDFLGPEF
                     FEAAEFAAVKQLLIRSKQGIVYSEKIKSRLGPKIEALLEMNPFDRLINFLALLNELAL
                     AKDYTLLNADHIILETKPQ"
     gene            5001..>5184
                     /locus_tag="DHV98_03155"
     CDS             5001..>5184
                     /locus_tag="DHV98_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK05370.1"
                     /translation="MDNGIYARFHTSKGNIDVLLTHDKTPGTVGNFVALAEGQLENQA
                     KKPGIPYYDGLSFHRVI"
     assembly_gap    5185..5280
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5281..>6029
                     /locus_tag="DHV98_03160"
     CDS             <5281..>6029
                     /locus_tag="DHV98_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006266482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK05371.1"
                     /translation="SFHRVIADFMIQGGDPQGTGAGGPGYQFDDEFHPELTHDGPGIL
                     SMANAGPGTNGSQFFITHVATPWLDNKHTVFGRVVSGQEVVDKIAQNDVLERLEILRV
                     GQDAETWNAVEAFRVFNGAKAEREAAAIRAEKDLLESLSEGFTETTTGLRYQIIQSGD
                     GIQPKSGENVSVHYKGMLADGKEFDNSYKRGNPIAFPVGQGNVIPGWDEGIQLLKVGD
                     KARFVIPSHLGYGSRGAGGVIPPNATLIFDV"
BASE COUNT         1522 a         1136 c         1271 g         1627 t
ORIGIN      
        1 ttaaaaattc taaaataagg tgctgcatcg acaccgctgc ctgcggccca ctgccaattc
       61 cctacattcg acgaacattc gtaatccagt aatttttcag caaagtaagc ttcaccccaa
      121 cgccaatcaa tgagcaagtg tttgcataaa aaactcgcca ccagcatccg cacgcgattg
      181 tgcatatacc ctgtggtatt gagctctctc atgcccgcat caactaaagg ataacccgtt
      241 tgcccatttt tccacgcctc aaactcctta ggatcatttc tccaacttat tcgatcgtat
      301 tgtggtttga aggatttggt gaccgtgtgc ggaaaatgcc ataatatttg cataaaaaac
      361 tcgcgccata tcagttcttt gagcagggta atgtcttcta taggaaggag cgcgcgaaca
      421 atctgccgga cactgacgct gccaaaacgc aaatgaggag agagtttcga agtccctttt
      481 gttaaaccag gaaaatttct ctgcccttga taattttggg ccatcacagg gctgtaatca
      541 tagggtaata ccctgtgcgc gctgggctta aagcccatat attcgagggt tggcatagca
      601 ccaagatctc cggggggcag gtttgctttg tgtttttcga cgggatattc ggtcaaggga
      661 tttgtttcaa gagccttcaa ccacttttta ctgtaagggg tatagacgac atagggtttg
      721 ccatcatctt tgacaatttc atccatttca aaaatgactt gatctttaaa ttgatgaaat
      781 ccaatattgt gctcttcgca aagacgtttt atggccaggt cccgtgttag ggcatagggt
      841 tcatagtccc gattacagat taggtgtttg acgtcaaatt cttgttgcag ttctttaatg
      901 gcttgttcag cagtgccgta atggaccttt aagtccccac cccaagactt cagttcttct
      961 ttaatttggc ttatttgctc atgaataaag ctgacacgac catcgtctgg ggcacatgaa
     1021 tcgagaatgt ttcgatcaaa gacaaataga ggcaccacgg gatatgaccc tctaagggct
     1081 ttgcttagac catgattgtc ttttagtcta agatctcgtc taaaccaaaa aatattaact
     1141 tctgggcgtt gacgctgctt gctgtcattc agcaacggct ccgaatttct ctnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnctgtgt ttgaccccgg agagtctcat cgttcttaat
     1321 tgagttttaa ggcccccatg cccccatcga gtcctataat ttgaccggtc atccatgaag
     1381 aagcgtcact gagtaaaaag taggtgcact gagcaatgtc ctgaggcgtt cccacgcgtt
     1441 taagcggatg acgctcgttc attttttcaa ttttttcctc actggataaa agttttccag
     1501 ccagtggcgt attggtaagc gatggagcga tggcattcac gcgcaacttc ggtgcgtact
     1561 ctgcagcgag cgaacgcgtt aatccttcga gcgctccttt ggctactgct actgaagcgt
     1621 gaaagggcat tccttgttgc actgcaaccg tgctgtaggt cacaatactg gcttgagggc
     1681 tattgagtag tttgggcaaa acattttgaa gacttcggat catgcccata gtgttaattt
     1741 caaagtctgt agcaaatgct tctggtttaa gtgcgcgaaa aggtctcaga ttaatgctgc
     1801 ccggagcata aacaaagcca tcaatttgat cgggtaatcc gtccatactg gcctcagggt
     1861 tgagcacgtc gaacggtata tgatgtactc cggtcacctc aggacggttg cgacatgccg
     1921 tgtaaacggt atggccgtta tcgatacaaa gttgggctac agcagcactg attcctgtag
     1981 agcctccgat tattagtata tttttcatga gtagctgccg aacatttcgg tgagtttttg
     2041 tgttctataa ttaaatattt cttcaagttt tggcgtgaca attaggggtg taaacaagga
     2101 tcctaaagcg cccatagggg ctttgtaatg gatgaggtcc tccatggcaa ccccattttc
     2161 aattgcggag aaaaagtgtt tgtggtgcca caaggtataa ggcccaaagc gctgctcatc
     2221 gacaaaatat tcattgggga cgacatgcgt gatctcggtg acccatttgg ttttgatgcc
     2281 taaaagcggg gaaacgcgat attcaataat ttgaccagga tacatgcgcc nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 accaggatac atgcgccggt ccgcgcccgc aataatatca aaccccatat attctggggt
     2521 tatggttttt aaattctttg gatctgagaa aaaatcccac gcttgttcga gcgtgatggg
     2581 tagcttttgg gttctgtgaa aagtatacaa aatgatattt tttgtaaaga tacaattgtt
     2641 taacaaaatt gatcaaaggt taaacaaaat catttctcgg ttttatcgtt ttattaacga
     2701 atcttttctc tgggtgaatt atattcgtta aaattttacg acatgaaaaa attaatcttc
     2761 tcctttttat tatccgtggc ctgttctttc ggggctttag cgcaaatcca aacccctgca
     2821 gcttctccag agcaaacctt aacacaaagc gtgggtttga gttctgtaac ggttcaatat
     2881 tcgcgacctg caatgcgtgg acgcacgatt tttggggact tagtgccctt ggacaaactc
     2941 tggcgtactg gagccaacaa aaacactttg gtgacttttg aaagcgacgc cacagtgggt
     3001 ggttcgccgt tgaaggccgg gacctacgca ctttacacgg tgccatccaa agatgagtgg
     3061 accgtttatt tttacacgga tacagaaaat tggggtttac ctaagccatg ggatgaaaat
     3121 aaaattgcag ccgtttataa cgttaaagcc caatccctcg atacatcagt ggaaagtttc
     3181 acaatcacta ttgataaggt cacagattct ggggcccatt taacactttc atgggaaaat
     3241 atgtctgtag ccattccatt tggcttcgat actgtgtctg cagtaatgca aaccatcgaa
     3301 cgcacaatga atggtcctgc tgcaggggat tattaccaag cggccgttta ttttttaaat
     3361 gcggacaaag acatcaacaa ggcaaaaact tggattgata aagccatagc gatgagtgaa
     3421 aagccggcct attggtacta tcgtcaaaaa gcgttaatct atgctaaatc aggggataag
     3481 aaaggtgcga ttgctgctgc agagcgttca atggaattgg ctcaagccgc aggaagccaa
     3541 gattacgtgg cgatgaataa aaagtcatta gccgaatgga ctaaataatc aaacgatggc
     3601 ttataaaatc tgtcgcagtt catttctgta atgcgatgga cttttgcccg tctgactttt
     3661 aaacgtttta ttgaagtggg agaaattatt gaatcccgat tcaaaacaga catcggttat
     3721 gctgagtgat ccctccgcca ggagtttaca ggcgtggatg actctgtatt ctgtaacaaa
     3781 ctgtacaaac gttttacctg ttttattttt aaaatagcga ctaaaggcct gtggcgtcat
     3841 gctgacctta tcggccattt cggttaggct aataggccgc gtaaagcttt gactaacaaa
     3901 gttatagata acatcgagtc ttgcagcatc ttgtggttta gtttctaaaa ttatnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc ttgtggctta gtttctaaaa ttatgtggtc
     4141 cgcattgagt agggtataat ctttagccag agcaagttcg tttagaagcg ctaaaaagtt
     4201 aatcaagcga tcaaatggat tcatttcgag cagggcctct atttttggtc ctaagcgtga
     4261 tttgattttt tctgaataaa caatgccttg cttgctgcgg attaaaagct gtttaactgc
     4321 agcaaattct gctgcctcaa aaaattctgg acccagaaaa tcctcccggg cttgaataac
     4381 aatttcactt ttattgtttg ttaaatgatt cgtaaatcca aaatgcggca aagaagcgcc
     4441 gataaagatt aagtctccat cgttgtagta cgatatgtgg tttccgatat gtcgtttgcc
     4501 acttccacca ttgatgtaga cgatctccat ttcaggatga taatgccatg aagaaggatt
     4561 ggctgcatta aaatcgcgca ggttttcaat gtataaggaa ctccctgggg caggagcaat
     4621 ggcttcgaac tgtggattct ttttcatagc gatataaaat taccaaaggt caataaggca
     4681 atgtgagggt aaaattaacc aatttatatg ttattttaac aatataaccc ataagcgatg
     4741 tattataggt taaaaataga tataaaatgg tcaaaaatgg aggagtatag gccgtcactt
     4801 tcacgcatct ttgacctgta gttaataata catcaatgta ctgtcgtttg actgtcagac
     4861 attggaaaac attaaaatcg gtaatttaga ttttaatttt tggtcgttag ttgtaaaagg
     4921 gagtcttggt cggctccctt ttttctttgt ttatcctcaa tgcaaatact acctttggcc
     4981 cctcattaat aattttagac atggataatg gaatttacgc tcgttttcac acaagcaaag
     5041 gcaatataga tgtattactg actcatgaca aaacaccagg aacggtgggt aattttgtgg
     5101 cattggccga aggtcaactc gagaatcaag ccaaaaagcc agggataccc tattatgatg
     5161 gtttgagttt tcaccgcgtt attgnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5281 agttttcacc gcgttattgc tgattttatg atccaaggtg gtgatccgca gggaactggt
     5341 gcaggtggac ctggatatca atttgatgat gaatttcatc cggagttaac gcatgatggt
     5401 cctggtatcc tatctatggc caatgctggt cctgggacta acggaagcca gttttttatt
     5461 acccatgttg ctacaccgtg gctagacaat aagcatactg tatttgggcg cgttgtctct
     5521 gggcaggaag ttgtcgataa aatcgctcaa aatgatgtgc tcgagcgcct ggagattttg
     5581 cgtgttggtc aagacgctga gacttggaac gccgtggagg cttttcgtgt ttttaacggg
     5641 gccaaagcag aacgagaagc agccgcaata cgcgctgaaa aggatttact cgaaagcttg
     5701 tctgaaggct ttactgagac aactacgggc ttgcgctacc aaattattca atcgggcgat
     5761 ggtattcaac cgaaatctgg agagaatgtt tccgtgcact acaaaggtat gctggctgac
     5821 ggtaaggagt ttgacaatag ttacaagcgc ggtaatccta ttgctttccc agtgggtcaa
     5881 ggcaatgtga tcccaggttg ggatgaaggc attcaactcc tcaaagtagg ggataaggcg
     5941 cggtttgtca ttccgagtca tttgggatac ggatctcgag gtgcaggagg ggtaattcca
     6001 ccaaacgcga ccttgatttt tgacgttga
//
LOCUS       DPUP01000094           10104 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5418,
            whole genome shotgun sequence.
ACCESSION   DPUP01000094 DPUP01000000
VERSION     DPUP01000094.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10104)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10104)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10104
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..390)
                     /locus_tag="DHV98_03165"
     CDS             complement(<1..390)
                     /locus_tag="DHV98_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 1"
                     /protein_id="HCK05372.1"
                     /translation="MKKPHILLVYIGGTIGMIRDFSSGALRAFDFDKLLKQIPELNLL
                     DCTMETISLSEPQDSSNLSPTHWGLMAEIIESHYAQADGFVVLHGSDTMAYSASALSF
                     MLQGLNKPVILTGSQLPIGDLRTDAKEN"
     gene            complement(387..1157)
                     /locus_tag="DHV98_03170"
     CDS             complement(387..1157)
                     /locus_tag="DHV98_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase TatD"
                     /protein_id="HCK05373.1"
                     /translation="MSVVIDTHTHLYLPEFAQDIDAVIERAQAVGVHEFYLPAIDSTT
                     TKAMYALAERFPKHMRLMMGLHPTSVQENFQAELDHVYKELSRRSFCAVGEIGIDLYW
                     QRDTLAWQQEAFAQQIKWAQEFNLPIVIHCRESFDEIFDVLDAVKGPMPKGIFHCFTG
                     TLEQANHIIGLGLSLGIGGVATFKNGKIDQFLAQIPMKHIVLETDSPYLAPVPFRGKR
                     NESSYLYHIAQRVAGIYDCPLTEVDQVTTANAHALFTS"
     gene            complement(1145..2353)
                     /locus_tag="DHV98_03175"
     CDS             complement(1145..2353)
                     /locus_tag="DHV98_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008611783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HCK05374.1"
                     /translation="MMLEMKVPSPGESITEVEIAQWLVADGDYVEKDQAIAEVDSDKA
                     TLELPAEASGIITLKAEEGDAVAVGQVVCLIDTDAARPEGGAAPKAASPAPNAAATTA
                     PTPVKTVSYATGTPSPSAKKLMDEKGLSADQIQGTGRDGRILKEDVIKGAPAMGSAAS
                     ENRGSSRQKLSMLRRKVAERLVSAKNETAMLTTFNEVDMSAIFALRNEYKEAFKAKHD
                     VGLGFMSFFTLAVVRALELFPDVNSMIDGDHKVTYDYKDISIAVSGPKGLMVPVIRNA
                     EELSFQGVEAEVKRLALRARDGQITVDEMTGGTFTISNGGVFGSMLSTPIINPPQSGI
                     LGMHNIVDRPVVKDGAVAIAPIMYVALSYDHRIIDGRESVGFLVAVKEALEDPIQHLM
                     HGDVKKALAL"
     gene            complement(2365..5112)
                     /locus_tag="DHV98_03180"
     CDS             complement(2365..5112)
                     /locus_tag="DHV98_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HCK05375.1"
                     /translation="MDRFSFLNAVHPSYIAELYDKYLQTPDLIEPSWKAFFQGFDFAI
                     EHGSLEALGVEMPTGLPAQVLKEFQVIKLIDAYRTRGHLFTKTNPVRERRQYKPTLAL
                     ENFGLAQEDLDQDFEAGSILGIGKTSLRNICHHLDQIYCDSIGIEYMYIRNPEEIQWI
                     QNWLNVNDNHPKFSPQEKKHILNKLNQAISFESFLHSKYVGQKRFSIEGVDAIIPGLD
                     ALIEQGSERGVTQFVVGMAHRGRLNVLANIFGKSAEAIFSEFDSKEYAEDDLFDGDVK
                     YHMGWTSFRKTDGGKEIRMDLAPNPSHLETVDAVVEGICRAKIDGPLKGDASKILPIL
                     IHGDAAIAGQGVVYEVIQMAQLDGYKTGGTIHIVANNQVGFTTNYLDARSSTYCTDIG
                     KVTLSPVLHVNADDAEAVCHAFKFALDFRMTFGRDVFIDVLGYRKYGHNEGDEPRFTQ
                     PSLYKAIGRHKNPRDIYADRLMAEGVIDAHFIPSLEQEYKNALEEDLAASREKDKTVV
                     TEILADDWAEYRLGSAEDILSQVDTRFPQKELDLLAEGITQLPKDKKFIKKIERIIQD
                     RNQRYFQENTLDWAMGELLAYATLMKEGFNVRISGQDVERGTFSHRHAVKKTEDDSEE
                     INLHNTLGLAGHMDIFNSLLSEYAVVGFDYGYAMAAPKTLTIWEAQFGDFSNGAQIML
                     DQYISAAESKWKIQNGLVMLLPHGYEGQGSEHSSARMERYLQLCSRQNMVVADVTTPA
                     NLFHLLRRQMKWNFRKPLIVFTPKSLLRHPDVVSTRESLAQGQFMPVIDDQHCDKKKV
                     TSLVFCTGKFYYDMVQRRQENGRDDVALVRLEQLFPLPVAQIEQVIATYPKVHDYVWA
                     QEEPANMGAWGFMLMNFKSVPLRLASRNVHSSPAAGSSARSKARHKKVLDSVFDTPNT
                     P"
     gene            complement(5247..6221)
                     /locus_tag="DHV98_03185"
     CDS             complement(5247..6221)
                     /locus_tag="DHV98_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020212409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase"
                     /protein_id="HCK05376.1"
                     /translation="MQQIGFYKEAIERALAGAKLPESPQGLYAPIEYILSLGGKRLRP
                     VLTLMACECFQGEYQKAIPAALAVELFHNFSLIHDDIMDQAPLRRGHQTVHHKWDLNT
                     GILSGDALLILAYRHFESYPPETFSALSKLFSQTAIEVCEGQQYDIDFEQREEVGMEE
                     YLQMINYKTAVLVGAAMKMGAIVAQVDRVQQDLIYEFGRSLGVAFQLQDDFLDAFGDP
                     EVFGKQVGGDILSSKKTFLYISAMTKGTREQQQALLDYFGNQNIESSEKVKQVKTLFE
                     ATGATQAIQESIKEHTQRAFAQLDQAHLSDQAKAYLSDFGKALMNRNV"
     gene            6401..7006
                     /locus_tag="DHV98_03190"
     CDS             6401..7006
                     /locus_tag="DHV98_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HCK05377.1"
                     /translation="MKEKIITKAGELFLNFGFKSITMDDIARELSMSKKTIYSCFENK
                     TALVRSVTESIYGIVIRGIDSICQKQLNPIEELYEIKKFVSLQLNDEKSSPQFQLQKY
                     YPEIFEQIQGNNFELIHGITINNLKRGIDQGLYRDNVNVEFVARIYFIGMTGIKDDTI
                     FPITEFQKIRLIESYLDYHLRGIVTKKGLALLNKYTDQNTL"
     gene            7003..>7679
                     /locus_tag="DHV98_03195"
     CDS             7003..>7679
                     /locus_tag="DHV98_03195"
                     /inference="COORDINATES: protein motif:HMM:PF02321.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK05378.1"
                     /translation="MKKILILVLAGFYFAPLKAQQTSYSLSLEQAIALAQDSSYASLN
                     ARREMTRALKKKWETTATGLPQINGAINYNNNIKQPVTLIPGEITGGAPGSFTPVIFG
                     TQQNATAQATLEQLIFDGSYLVGLQAAKTFLDFSKNAYEKTQIEVEKSVVNAYGSAKM
                     AEALVSVFDNNYKTLKKSYDELQIVYENGLTELEALEQLEITLLEVKGYLDNAQRSQR
                     LAQHLLRA"
     assembly_gap    7680..7820
                     /estimated_length=141
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <7821..8502
                     /locus_tag="DHV98_03200"
     CDS             <7821..8502
                     /locus_tag="DHV98_03200"
                     /inference="COORDINATES: protein motif:HMM:PF02321.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK05379.1"
                     /translation="HLLRATLGLPLATELILTDELDTLVLRAGEEINPEISLDLQKQI
                     DVRIAENFTEQRRLEWQLERSRALPSLSAFANYSTQAFSNDFTFTDNTQQWFQSSVLG
                     IRMQVPLFSSGFRSARSSQAKIAWDQAKTEFAQTKQATQIAFENALSDFNLSKDNFGN
                     ASKSLNLAERVAKKNQIKFDQGIASSFDLYQAQAQFYRAQQNYYTSLLALLNAKTVLE
                     TFINPPTF"
     gene            8512..9303
                     /locus_tag="DHV98_03205"
     CDS             8512..9303
                     /locus_tag="DHV98_03205"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05380.1"
                     /translation="MNKYILLSLWASLSLLSCQEKKQTVEEVIATNDLAQLRAQRAAI
                     GDQHQALSQDLEALDRAIGKLDQNEKLSLVTALVISPERFEHYLQVQGDVATKQNIVL
                     YPQFSGQLQTLHVSVGDQVKKGDLLATLDDNGMAQQLNQLMVQEALAKTTFERQEKLW
                     HQNIGSELQYLQAKTQYEAQRSLTQQVAQQLEKSKIVAPFDGTIDAVLAEAGTVVSAG
                     MSPVFRLVNLSNMYLKADVPEGYLNDVVAGKKVIVNFPVLRLEVP"
     assembly_gap    9475..9709
                     /estimated_length=235
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <9710..9853
                     /locus_tag="DHV98_03210"
     CDS             <9710..9853
                     /locus_tag="DHV98_03210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HCK05381.1"
                     /translation="MVVTGKTEGDFVEIIQGIQPGDTVIAEGARSVKDGQPISILKTI
                     THE"
     gene            9846..>10104
                     /locus_tag="DHV98_03215"
     CDS             9846..>10104
                     /locus_tag="DHV98_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008611190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05382.1"
                     /translation="MSKSNKNLNKEFGLASWAIDHKTIIYVLIGVILLLGGKAYYDMP
                     RETFPEIKETKIYISAPYPGNTAEDIERLILDPLEDRLKNLS"
BASE COUNT         2803 a         2314 c         2023 g         2588 t
ORIGIN      
        1 attctctttg gcatcggtgc gcaggtcgcc tatgggtaat tgcgagcccg ttaagataac
       61 cggcttgttc aggccttgaa gcataaagct tagggccgaa gcggaatagg ccatggtatc
      121 gctgccgtgc aggacaacaa atccgtcagc ttgtgcgtaa tgagattcga taatttcggc
      181 catcaagccc caatgcgtgg gacttaaatt ggagctatct tgtggttcgg acaaagaaat
      241 tgtctccata gtgcagtcca aaagattaag ctctgggatc tgctttaaca gtttatcaaa
      301 atcaaaagcc cttagggctc cagaggaaaa atcgcgtatc ataccgatgg tcccccctat
      361 gtaaaccaat aaaatatgtg gctttttcat gacgtaaata aagcatgtgc gttagcggtt
      421 gtaacctgat caacctcagt taaaggacaa tcatagatcc cagcaacacg ctgagcaata
      481 tggtaaagat aactactttc attgcgtttt cctctaaatg gtactggggc taagtaaggg
      541 ctatccgtct ccaaaacaat atgtttcatc ggaatttgcg ctaaaaactg gtctattttg
      601 ccatttttaa aggtggccac gcccccaata cccagggaaa gcccgaggcc gataatgtga
      661 tttgcctgtt cgagggttcc ggtaaaacaa tgaaaaatgc ctttaggcat tggtcctttg
      721 acggcatcga gtacgtcaaa aatttcatca aaggattcac gacaatgaat gacaataggc
      781 aaattaaatt cttgagccca tttgatttgc tgagcaaagg cttcttgctg ccacgctaga
      841 gtgtcccttt gccaatacaa atcgattcca atttctccta ccgcacaaaa cgatcgacga
      901 gataattctt tatagacatg gtcgagttcg gcttgaaaat tttcttgaac agaggttggg
      961 tgcaggccca tcatcaagcg catgtgtttg gggaaacgct cggccaaagc atacatggcc
     1021 tttgtcgtgg tggagtcaat ggccggtaaa tagaactcat gaacaccgac ggcttgcgct
     1081 cgctcaatta ccgcatcaat atcctgagca aactcaggaa gataaagatg ggtatgggtg
     1141 tctatcacaa cgctaatgcc tttttgacgt cgccatgcat caagtgctga atcgggtcct
     1201 ctagggcttc tttaaccgca actaaaaatc ctactgattc gcgtccgtca atgattcggt
     1261 ggtcatagct caaggccaca tacatgattg gggctatagc cacagcacca tccttaacca
     1321 cagggcgatc cacgatattg tgcatgccta aaatacccga ttgagggggg ttaataatag
     1381 gggtggagag catacttcca aaaacaccac cattggatat tgtaaatgtt cctccggtca
     1441 tttcatcaac ggtaatctga ccatcgcgag cgcgcagagc cagacgctta acctcagcct
     1501 ctaccccttg gaaacttaat tcttcagcgt tacggatcac ggggaccatc aaacctttcg
     1561 gtcctgaaac tgcgattgaa atgtccttgt aatcataagt taccttgtga tctccatcaa
     1621 tcattgaatt gacatcaggg aaaagctcta aagcgcgtac tacagccaaa gtaaaaaaag
     1681 acatgaatcc tagacccaca tcgtgtttgg ctttaaacgc ttccttatac tcattgcgca
     1741 aggcgaatat ggcactcatg tccacttcgt taaacgtagt gagcatggct gtttcattct
     1801 ttgccgagac gagtcgttca gcaacttttc tgcgcagcat agaaagtttt tggcgacttg
     1861 aaccacggtt ttctgaagcc gcactcccca tcgctggcgc tcctttaatt acatcttcct
     1921 ttaagattcg gccatcacgc cccgtacctt gaatttgatc ggcactaagg cccttttcat
     1981 ccataagttt cttggctgaa ggcgacggag tgcctgtagc ataactcact gtttttaccg
     2041 gcgtaggtgc tgtcgtagcg gctgcattag gggccggtga tgcggcctta ggcgccgccc
     2101 ctccctcagg acgagcagca tctgtatcga tcaaacaaac cacttgacct acagccacag
     2161 catctccttc ttcggctttt aaggtaatga ttccactggc ctcagcgggg agctctaaag
     2221 ttgctttatc gctatccacc tcggcgatgg cctgatcttt ttcaacataa tcgccatcgg
     2281 ctacgagcca ttgtgcaatt tcaacttctg taatcgattc gcccggagag ggcactttca
     2341 tttctaacat aatacaacgg ttacttatgg tgtattgggt gtgtcaaaga cactgtctaa
     2401 aactttttta tgacgcgctt tagaacgtgc gctacttcct gcggcaggtg agctatgcac
     2461 gtttctcgaa gccaaacgca aaggcactga tttgaaattc atgagcataa aaccccatgc
     2521 gcccatattg gcaggttcct cttgagccca aacataatca tggacctttg gataagtcgc
     2581 aataacctgc tcaatctgtg ctacgggcaa tggaaatagt tgttccaatc gtaccagagc
     2641 cacatcgtca cgtccatttt cttggcgacg ttgtaccata tcgtagtaaa actttccggt
     2701 acagaacacc aaggaggtta cttttttctt gtcgcaatgt tgatcgtcaa tgaccggcat
     2761 aaattgtccc tgggctaaag attcccgagt agagaccaca tcaggatgac gcaacaaact
     2821 cttaggggta aatacgatca atggctttct gaaattccac ttcatttgac ggcgcaacaa
     2881 gtggaataaa ttcgctggag tggtcacgtc ggcgaccacc atgttttgtc gagaacacaa
     2941 ttgcaggtag cgctccattc gggcacttga gtgctcagag ccttgccctt cataaccatg
     3001 cggcaataac atcaccaatc cattttggat tttccattta ctctcggcag cggaaatata
     3061 ttgatcgagc ataatctggg ccccattaga aaaatctcca aattgggcct cccaaatagt
     3121 caaagttttt ggggcggcca tcgcataacc ataatcaaag cccactacgg catactccga
     3181 aagcaatgaa ttaaaaatat ccatatgccc agccagacct aaggtattgt gtaggttgat
     3241 ttcttcagaa tcatcctcag tttttttgac ggcgtgtcta tgagaaaaag tgccccgctc
     3301 cacatcttga ccagaaatac gcacattgaa cccttctttc atcaaagtag cataagccaa
     3361 aagctctccc atggcccagt ctaaggtgtt ttcttggaaa tagcgctgat ttctgtcttg
     3421 aataatgcgc tcaatttttt tgataaattt cttgtcttta ggcagttggg ttatcccttc
     3481 tgctaaaaga tccaattcct tttgaggaaa acgagtatct acctgcgata agatatcttc
     3541 agcgctcccg agtctgtact ccgcccaatc atcggcaaga atctcggtaa ccaccgtttt
     3601 atctttttct cgagaagccg ctaaatcttc ctctaaggca tttttatatt cttgctcaag
     3661 tgacggaata aaatgggcat cgatgacccc ttctgccatc aatcgatccg cataaatatc
     3721 tctaggattt ttatgacgcc ctatggcttt gtaaagactc ggctgggtaa atcgaggttc
     3781 atcaccttca ttatgtccat attttcgata acccagcaca tcaataaaga cgtcccgtcc
     3841 aaaggtcatt ctgaagtcca aagcaaattt aaacgcatga caaaccgctt cggcgtcatc
     3901 tgcatttacg tgcaataccg gcgaaagggt aaccttacca atatcggtac aataggtgga
     3961 agaacgggca tcgagataat tcgtggtaaa tccaacttga ttattggcca caatgtgaat
     4021 cgtccctccc gttttataac catcgagttg cgccatttga atcacctcat agacgacccc
     4081 ttgcccagcg atcgccgcat cgccatgaat cagtatcggg aggatttttg aagcgtctcc
     4141 ttttaaaggc ccatcgattt tagcacgaca tatcccctcc actaccgcat caaccgtttc
     4201 aaggtgagaa gggttagggg ccaagtccat acgtatttcc ttgcccccat ctgtctttct
     4261 gaaactggtc cagcccatgt gatattttac atcgccatca aataagtcat cctcggcgta
     4321 ttccttgctg tcaaattcac taaaaatcgc ctcagcagat ttgccaaaaa tattggccaa
     4381 aacattcaat cgcccacgat gcgccatgcc cacaacaaat tgggtcaccc cgcgctctga
     4441 tccttgttca atcaaagcgt caagccccgg tataatggca tcgacgcctt caatggaaaa
     4501 tcgcttttgg ccgacatatt tggaatgtaa aaaactttca aaagaaatag cctgattcaa
     4561 cttgttcagg atatgctttt tttcttgtgg ggaaaatttc gggtggttat cgttgacatt
     4621 cagccagttt tgaatccatt gaatctcttc tggatttcga atatacatat attcaatacc
     4681 aattgaatca caataaatct gatccaaatg atgacaaata ttgcgcagac tggttttacc
     4741 aatccccaaa atactgcccg cctcaaaatc ctgatctaaa tcttcttgag ccaacccaaa
     4801 attctcaagc gccaaagtag gcttgtactg tcggcgttca cgaaccgggt ttgttttggt
     4861 aaacaaatgc cctctggtgc gataggcatc gatcaatttg attacctgaa attctttgag
     4921 tacttgagca ggaagtccgg tgggcatttc aacacctaaa gcttcaaggg aaccgtgctc
     4981 aatcgcaaaa tcaaagcctt gaaaaaaagc tttccaactc ggctcgatca ggtcaggagt
     5041 ttgcaggtat ttatcgtaaa gctcagcgat gtacgacgga tgtacggcat tgagaaatga
     5101 aaatcgatcc ataagtgaga atcctgcttg ggtttttaat tctgacgttg caaaaataca
     5161 ataaatcagc aatacagcag ggcatatgta tagaattata ggcggccaaa aatgagaaga
     5221 actatccgct ctgtctaaaa aaaattttag acgtttctgt tcatcagggc ctttccaaaa
     5281 tcacttaaat acgccttggc ttgatcggat aaatgggcct ggtcaagttg cgcaaaagca
     5341 cgttgggtat gctctttaat ggactcctgg atcgcctggg tggctcctgt ggcttcaaac
     5401 aatgttttga cctgcttcac tttttcactg gactcaatat tttgattgcc aaaatagtct
     5461 aataaggctt gttgttgttc ccgagtgcct ttggtcatgg cactgatata caaaaaggtc
     5521 tttttactgc tcaaaatatc tccgcccact tgtttgccaa aaacctcagg atcgccgaag
     5581 gcatctaaaa aatcgtcttg cagttgaaat gccacgccca gactgcggcc aaactcataa
     5641 atcagatctt gctgtacccg gtctacttgg gcgacaatgg cccccatctt catggctgct
     5701 cctaccaaga ccgccgtctt gtaattgatc atttggaggt attcttccat acccacttcc
     5761 tctcgctgtt caaaatcaat atcatattgt tgcccttcac acacctctat ggccgtctga
     5821 ctgaataatt tggacaaggc gctaaaggtc tcgggaggat aggactcaaa atgacgatag
     5881 gccaaaatca acagggcatc cccagagaga atccctgtgt tcaaatccca tttgtgatgg
     5941 accgtttgat gccccctgcg caagggcgct tgatccataa tgtcgtcatg gatcagggaa
     6001 aaattgtgaa atagttctac ggccaatgcg gcgggaattg ccttttgata ttccccctga
     6061 aaacactcgc aggccatgag cgtcaatacg ggacgcaagc gctttcctcc caatgagaga
     6121 atatactcaa tgggcgcata caagccctgc ggagactccg gcaatttcgc cccggctaaa
     6181 gcgcgctcaa tcgcctcttt ataaaaccca atttgctgca tcccctattt ttgtgctaaa
     6241 atacattttc atcacgtgcc tcagtagctt gaacataaaa aattggggga aaccaagcca
     6301 aaaggtcaat ttttatgcgg gataattagg gatgttaaat ttttgtaaac ttaggaaact
     6361 tttgtggtgt taaaagtttt cttgattaca tttgcgcgct gtgaaagaga aaataattac
     6421 caaagctgga gagctctttt taaattttgg ttttaagagc attaccatgg acgacattgc
     6481 tcgagagctg tccatgtcca aaaaaacgat ctatagctgt tttgaaaaca agacagcact
     6541 cgttagatcg gttacggaat cgatttacgg tattgtcatt cgcggcatag acagtatttg
     6601 ccaaaaacag ctcaatccta ttgaggagct ttatgagatt aaaaagttcg tttcgttgca
     6661 attaaatgac gaaaaatcat cgccccagtt tcaattacag aaatattacc ccgaaatttt
     6721 tgagcaaatc cagggcaata actttgaact cattcacggc attacgataa acaatctaaa
     6781 aagagggatt gatcaaggac tctatcgcga taatgtcaat gtcgaatttg tcgcacggat
     6841 ttattttatc ggcatgacag gcattaaaga cgatacaatt tttcccatca cagaattcca
     6901 gaaaatacgc ctgattgaat cctatttaga ttatcactta cgcggtattg tcaccaaaaa
     6961 aggcttagcg ctcctgaata aatacaccga tcaaaacaca ctatgaaaaa gattttaatt
     7021 ctggttctcg cgggattcta cttcgccccc ttgaaggccc aacaaacgag ctatagtctg
     7081 agtcttgagc aagccatcgc cctggctcaa gacagcagct atgccagttt aaacgcccgc
     7141 cgtgaaatga ctcgggcctt aaaaaagaaa tgggaaacga ccgccacggg cttgcctcaa
     7201 atcaatgggg cgattaacta caacaataac ataaaacagc ccgtaacctt gattcctggt
     7261 gaaattacag gaggggcgcc cgggagtttt accccggtta tttttgggac ccagcaaaat
     7321 gccacggccc aagccaccct cgaacaactg atctttgacg gcagctatct cgtggggctc
     7381 caagccgcga aaacattttt agatttttca aaaaacgctt acgaaaaaac acaaattgaa
     7441 gttgagaaaa gtgtcgtgaa tgcctatggg agcgctaaaa tggccgaggc actcgtatcg
     7501 gtctttgaca acaactacaa gacccttaaa aaatcctatg acgagctcca aattgtttat
     7561 gagaacggat tgactgaact cgaagcccta gaacagctgg aaatcacctt gctcgaagta
     7621 aaaggctatt tggacaacgc tcagcggagt cagcgtcttg ctcagcatct tttgcgggcn
     7681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn gcatcttttg cgggccactt tgggactccc cttagccacc
     7861 gaactaattt taaccgacga gctggacacc cttgttttgc gtgctggcga ggaaataaat
     7921 cctgagatca gtttggatct acaaaaacag attgatgtgc gcattgcaga aaattttaca
     7981 gaacaaagac gtttagagtg gcagctcgaa cgcagtcgtg cactgcctag tttatcggcc
     8041 tttgccaatt atagtactca agcattcagc aacgatttta cttttaccga caacacccaa
     8101 caatggttcc aatcctctgt cctcggcata agaatgcagg tccccctctt tagtagtggg
     8161 tttcgcagtg cacgaagcag tcaggcaaaa atagcttggg accaagccaa aactgagttt
     8221 gcgcaaacca aacaagccac gcaaatcgcc tttgaaaatg ctttgagcga ttttaatttg
     8281 tccaaagaca attttggcaa tgcctcaaag agcttgaatt tagcagaacg tgtggccaaa
     8341 aaaaatcaaa tcaaatttga ccaaggcatt gccagcagct ttgatcttta tcaggcacag
     8401 gcccaattct atcgggcgca acaaaactat tacacctcac ttttggcctt actcaatgcc
     8461 aaaacggtcc tcgaaacctt tatcaacccc ccaacttttt aatctgttac catgaataaa
     8521 tacatactcc tttcgctttg ggccagttta agccttttga gctgtcaaga aaaaaaacaa
     8581 accgttgaag aggttattgc caccaatgat ttagcccaat tacgtgccca acgcgccgca
     8641 ataggggatc aacaccaagc cctttctcaa gatttagaag cattggacag agccatcggc
     8701 aaactcgatc aaaatgaaaa attatctttg gtcaccgccc tagtcatctc ccccgaacgc
     8761 tttgaacact atctacaggt tcaaggggat gtagcgacca agcaaaacat agtcctttat
     8821 cctcagtttt caggtcaact ccaaacactg catgtctctg tgggggatca ggttaaaaaa
     8881 ggagatcttt tggcgaccct agacgacaac ggaatggcac aacagctcaa tcaattaatg
     8941 gttcaagaag ctctggccaa aactactttt gaacgtcaag aaaaactttg gcatcaaaat
     9001 attgggagcg aattgcaata cttgcaagcc aagacacaat atgaagccca gcgcagtttg
     9061 acccaacaag ttgcacagca gcttgaaaaa agtaaaatag tggccccgtt tgacggaact
     9121 atagatgccg tattggcaga ggcaggaact gtcgttagtg ccggaatgag tccggtattt
     9181 agactggtta acctcagcaa tatgtatctg aaagcagatg ttcctgaagg ctatctcaac
     9241 gatgttgtgg caggaaaaaa agtcatcgtg aactttccag tactccgtct tgaagtccct
     9301 tagaaaattc gaagtgtagg tcgttatatt aatccggaca acagaacgtt tagtgtcgag
     9361 gtcgatttgc ccaataacaa agcgcaaatc aaacctaacc tcaccgcgca aattaatatt
     9421 aatgattaca ccaatgacca agcccttttg gtcccacaat ctgtcatttc agaannnnnn
     9481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna tggtcgtcac
     9721 cggaaaaacc gaaggcgatt ttgttgagat tattcaaggc attcagcctg gagacacggt
     9781 aattgctgaa ggtgcccgta gtgtaaagga tggacaacct atttcaattc tcaagaccat
     9841 aactcatgag taaatcaaat aaaaacctga acaaagaatt cgggctggct tcttgggcca
     9901 ttgatcacaa aaccattatt tatgtgttga ttggggtgat cctgcttttg ggaggaaagg
     9961 cctattacga tatgccccgg gaaacatttc cagaaatcaa ggagaccaaa atatacatca
    10021 gcgcccccta tcctggtaat actgcagaag atattgaacg cctcattctc gaccccttgg
    10081 aagatcgctt aaaaaacctg agta
//
LOCUS       DPUP01000095            2891 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_28635,
            whole genome shotgun sequence.
ACCESSION   DPUP01000095 DPUP01000000
VERSION     DPUP01000095.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2891)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2891)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2891
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1362
                     /locus_tag="DHV98_03220"
     CDS             <1..1362
                     /locus_tag="DHV98_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05383.1"
                     /translation="VFLVELLDFRSDTDRESTIEAIVRDIPFKGATAWILICSIFVAS
                     IGLNANSTAVVIGAMLISPLMGPILGIGLSIAINDIDTLKKSLINFGVMILLSVLTAF
                     LFFWLFPLREESSELLARTKPDIRDVLIAFFGGLALIIARTKKGTIASVIFGVAIATA
                     LMPPLCTVGFGLSQAFLGNPKGLAFAAGAFYLFVINTIFIALATFIVLKVLRFPMLKY
                     ANSARRQKIARLVSFLAILVMIPAGFTFYSVLKESSFNNEARQFIERELEGLPNASYI
                     KKYATTKYQPEEGSIIEITSFGGQQIDPVSLELLRSRMQKYKALSETTLLLNQNIEED
                     DVENEMRYLVELRSRDSLEIYNKEQKIAILERELSRLLKYEESQIPFAAISQEAKILH
                     ADLIQLRYAPMLVSNFERVDTLVVFETLWSEKARLKEVEAQRNQLYQWLKYKLALDTL
                     VVR"
     assembly_gap    1449..1571
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1572..>1915)
                     /locus_tag="DHV98_03225"
     CDS             complement(<1572..>1915)
                     /locus_tag="DHV98_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05384.1"
                     /translation="FPSEISGGMQKRVSIARAIVNNPHYLFCDEPNSGLDPKTSMVID
                     NLIQEITSEYNMTTIINTHDMNSVMEIGQNIVFLQNGSVAWEGNADNIFNATEQSVID
                     FVYSSNLFKKIR"
     assembly_gap    1916..2072
                     /estimated_length=157
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2073..2451)
                     /locus_tag="DHV98_03230"
     CDS             complement(<2073..2451)
                     /locus_tag="DHV98_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003440626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05385.1"
                     /translation="MIQVKHLHKSFGEVQVLRDISTTFEQGKTNLIIGSSGSGKTVFL
                     KCLLGLFSPEQGEIFYGTQSFNAMDKNQRKELREHIGMVFQGGALFDSMTVEENIMFP
                     LRMYSNQSQGQMRDRVNTVLDRVN"
     gene            complement(2451..>2891)
                     /locus_tag="DHV98_03235"
     CDS             complement(2451..>2891)
                     /locus_tag="DHV98_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCK05386.1"
                     /translation="IGSFITSSIGSMRVTEQIDALEVMGINSLNYLVFPKIIALLLYP
                     FIIGLAMFLGIFGGWFASVYGGFTSSAAFIEGIQSDFIVFHLTYAFIKTLVFAFILAT
                     VPSFQGYYMKGGALEVGKASTYSFVWTSVIIILANYVITTLLLS"
BASE COUNT          753 a          510 c          574 g          774 t
ORIGIN      
        1 gtattcctcg tagagctttt agattttcga agcgatactg atcgagaaag cactattgaa
       61 gccattgtgc gcgatattcc tttcaaaggg gctacggcgt ggatcttgat ttgttccata
      121 ttcgtggcct cgatagggct taatgcaaac tctactgccg tggttattgg cgcgatgctt
      181 atttctccgt taatggggcc aattttaggg attggtttat ctattgcaat caatgacatt
      241 gacaccttaa aaaaatcctt gatcaacttt ggtgtgatga tcctcctgag tgttctgacg
      301 gcatttttat tcttttggtt atttccgctg agagaggaat cttcagaatt attggctcga
      361 acaaaaccag atatccgaga tgtgctgatc gcattttttg gcggcttggc attgatcatt
      421 gcccgaacga aaaaaggaac tattgcaagt gtgatttttg gtgtggccat tgctacagcc
      481 ttaatgcccc cattgtgtac tgttggattt ggcttgtcac aagcctttct ggggaaccca
      541 aagggtttag cctttgcggc aggagcgttt tatttatttg taattaatac tatattcatt
      601 gctctggcca cctttattgt cttaaaggtt ttgcgttttc cgatgctcaa atacgccaat
      661 tcagcgcgtc gtcaaaaaat cgcgagattg gtttcttttt tagccatttt ggtgatgatc
      721 cctgcaggct tcacctttta tagtgtcctt aaagaaagta gtttcaataa cgaagcacgg
      781 cagtttatcg agcgtgaatt agaaggttta cccaacgcct cctatattaa aaaatacgcc
      841 acaactaaat accagccgga agaaggctca attatagaaa tcacctcttt tggtgggcag
      901 caaattgatc ccgtgtcatt ggagttgttg cgcagtcgta tgcagaaata caaagcgctc
      961 agcgagacca ctttattatt gaaccaaaat attgaagagg atgatgtgga gaatgaaatg
     1021 cgttatttgg tagaattgcg ctcgagggac tcgttagaga tttacaacaa agagcagaaa
     1081 attgccatat tggaaagaga actttcgcga ttgctcaaat atgaagaaag tcaaatacca
     1141 tttgcagcca taagtcaaga ggcaaagatt ttacatgctg atttgattca actccgctac
     1201 gcgcccatgc tggtctctaa ttttgaacga gtagacactt tggtcgtatt tgaaactctt
     1261 tggtctgaga aggcaaggct caaagaagtt gaggcgcaaa gaaatcaact ctatcaatgg
     1321 ttaaaatata agctggccct ggatacgctt gtggtccgtt aagtgcgaat gaatctgtga
     1381 agtatgggtt ttgactgcct agtatgccgc ttagcgatgg gtttgttgtt ggatggtgcg
     1441 aatcttctnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn ntgcgaatct tcttaaataa gttagaagag taaacaaagt cgataacgct
     1621 ttgttctgta gcattaaaaa tattgtcggc attgccttcc caagcgactg agccattttg
     1681 caaaaagaca atgttttgac ctatttccat gacactgttc atgtcgtggg tgttgatgat
     1741 cgtggtcata ttgtattctg aagtaatctc ttgaattaaa ttgtcaatca ccatagatgt
     1801 tttcggatcg agaccagaat tcggttcgtc gcaaaataaa tagtgcgggt tgtttactat
     1861 cgctcgagca attgagactc gtttttgcat tcctcccgag atttcagagg gaaatnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnagttaacc cgatctaata ccgtattgac
     2101 gcggtcgcgc atttgccctt gggattgatt ggaatacatg cgtaacggaa acataatatt
     2161 ttcttcgacc gtcatggagt caaaaagggc accgccttgg aagaccatcc cgatatgctc
     2221 gcggagctcc tttctttggt ttttatccat ggcattgaag gattgcgtgc cgtaaaaaat
     2281 ttcgccttgc tctggactaa agagcccgag aagacatttc aaaaaaacag tttttccact
     2341 accgcttgag ccaatgatta ggttggtttt accttgctca aaggtggtgc tgatatctcg
     2401 gagcacttgg acttcgccaa aagatttgtg taagtgtttg acctgtatca ttagcttaac
     2461 aataaagtgg taataacata attggccaaa attataatga cactggtcca aacaaaagaa
     2521 taagtgctcg ctttacccac ttcaagggcc ccccctttca tgtaataccc ctgaaaagag
     2581 gggaccgtag ccaaaataaa ggcaaaaact aaggtcttga taaaggcata ggtcaagtga
     2641 aaaacgataa aatcagattg tattccctca ataaaagcgg ctgatgaagt gaatccgcca
     2701 tatactgacg cgaaccaacc accaaaaatc cctaaaaaca tggccaaacc aataatgaat
     2761 gggtagagca gaagcgcaat aatttttgga aatactaaat aatttaatga attaatcccc
     2821 atgacttcga gggcatcaat ttgttctgta acccgcatag agccaatact cgaggtgata
     2881 aatgagccaa t
//
LOCUS       DPUP01000096            5497 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10291,
            whole genome shotgun sequence.
ACCESSION   DPUP01000096 DPUP01000000
VERSION     DPUP01000096.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5497)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5497)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5497
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            205..591
                     /locus_tag="DHV98_03240"
     CDS             205..591
                     /locus_tag="DHV98_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05387.1"
                     /translation="MERKIKYEMEFPIHVSPSLLYQYISTPSGMSEWYADNVNSRGQL
                     FTFIWEGSEEQAKLLGKKTGERIKFRWLDDEDTDYFFELRIQVDDITKDVSLMITDFA
                     EEDEVEEGKMLWENMVSNLKHVLGSA"
     gene            636..1508
                     /locus_tag="DHV98_03245"
     CDS             636..1508
                     /locus_tag="DHV98_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013622742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HCK05388.1"
                     /translation="MINFNGTIHDKEEITPSLHNRGLHYGDALFETMKVVGRRILFAE
                     AHYFRLMASMRLMRMEIPMHWTPEFFQSEINKTLKGQGGHSIHRVKILVWRDWGGRYT
                     PHSEGVSYAIFTEALAQAPYILEDKAYKVDLYKDHYVNKGMLEQLKTNNKLTHVLAGI
                     YATENDYQSCLLLNHAKQVVESISGNIFLVKDYKIKTPPLSDGCLKGIMRGVLIEILA
                     KHPDYILSQESISPFELQKADELFLTNAITGIQPITQYRKKQYAKKVSSELIEKLNEY
                     AGLSPSSSQDSRGH"
     gene            complement(1477..2046)
                     /locus_tag="DHV98_03250"
     CDS             complement(1477..2046)
                     /locus_tag="DHV98_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05389.1"
                     /translation="MAPNQNIKPLKGYLLIAEPSIIGDLSFNRSAILLAEHNHEGSIG
                     FILNKPLRYDLNDLVPEVSPTIPVFNGGPVEQDNLYFIHNAPDLIDHSVYIDFGIYWG
                     GDFTQIIELLNKGLLTNDQIQFFLGYSGWGPEQLEEEWQQNNWLVMPNDLHSDQIVKT
                     DQNYWRNTMNALGGAYAMWSNAPENPAMN"
     gene            complement(2146..2418)
                     /locus_tag="DHV98_03255"
     CDS             complement(2146..2418)
                     /locus_tag="DHV98_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCK05390.1"
                     /translation="MNKSDLIDAMAADAGITKAAAKKALESFLGNVEGSLKGGNRVSL
                     VGFGSWSVSKRAAREGRNPQTGKTIKIAAKNVVKFKAGSELSDSVN"
     gene            complement(2604..3554)
                     /locus_tag="DHV98_03260"
     CDS             complement(2604..3554)
                     /locus_tag="DHV98_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008615821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HCK05391.1"
                     /translation="MTKPLRIIFMGTPDFAVGVLNKLVEHNYLVLGVVTAPDRPAGRG
                     RSLQPSAVKNAALGHQLQVWQPESLKDPEFLKTLRELNPDVFVVVAFRMLPEVLWKIP
                     KKGTFNLHASLLPQYRGAAPINWAIINGETKTGVTTFFIDHQIDTGAIIDSIPCPIQS
                     EDNASSLHDKLMVAGTQLVIKTLEAIANNRAHSKAQKDSDQLRSAPKLNPENTRIIWD
                     SPAKQIVNLIRGLDSYPGAWTTLIRNEQAVKVKIYQVQSTGLSSVLTPGSLSCDKKSL
                     LVHTADQQLAIKILQLPGKKKMPIESLLNGYSFEKEDKFV"
     gene            complement(3551..>5022)
                     /locus_tag="DHV98_03265"
     CDS             complement(3551..>5022)
                     /locus_tag="DHV98_03265"
                     /inference="COORDINATES: protein motif:HMM:PF16124.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05392.1"
                     /translation="QWGFDFRPAYQQLKVLRQLQPQTPILALTGTATEEITAEITNAL
                     ELREPKIFSRPLIKENIQLFIEQREDVFERILAISKAQKGSGIVYVPTRKLSEQYAHN
                     LKNKGLDCAFFHGGMDQKQKQTALKNWLTRPAQVMVATSAFGMGINHAGVRFVIHTFV
                     PDAIESYIQEIGRAGRDGAPAQAWLIYHQHDIAQFKRRKKNQILNTEDIKQFYRHLCN
                     YFQIAYGEGAGEIFGLAVGEFCTIYDLNPTKAMAALNILDRIGIISLKHQYGSKTRLQ
                     FIAENTFLNDALDDNPGAGMIGRNILRLYGGVFQSKISIDLYQLARKTGVTIEQIKAA
                     LIWMQQRELIDLEMFQTDLQLTFLLPREDARSVNPHRAIIERHAKRVRAQERDVLDFI
                     HQSQGCLKQTLARYFGQVLNTDCGQCSNCLSRKKQSSANAGHAIAELILNLLKDQNLT
                     IFELRENINFDPIDIDTVLTYLHNEQKIGIDAANRYFLR"
     assembly_gap    5023..5141
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5142..>5497)
                     /locus_tag="DHV98_03270"
     CDS             complement(<5142..>5497)
                     /locus_tag="DHV98_03270"
                     /inference="COORDINATES: protein motif:HMM:PF00270.27"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RecQ family ATP-dependent DNA helicase"
                     /protein_id="HCK05393.1"
                     /translation="DIINALVSCQDVLAVLPTGSGKSLCYQIPGLLNEGICVVISPLV
                     ALMEDQVNDLMGRNIKAIALAGPQSPEEMMRIFDLFRHGGYKFLYVAPERLKQELVLD
                     FLKTIDINLWAIDEAH"
BASE COUNT         1513 a         1125 c         1161 g         1579 t
ORIGIN      
        1 ttatgaatcc gacgctctaa ccagctgagc tacctcgcca aaaatgcact gtttttcagt
       61 gcgtgcaaat atagaaacaa aataaagtat ggcaaatgct tgaatgtgtt ttttagcacg
      121 tctaaaaatt acgtaaaatt aattcccgca gtttttggca aaatagaatt aatatctata
      181 ttgcttcact gctaaaaata aactatggag cgcaagataa aatacgagat ggaattcccg
      241 atacatgtat ctccatcgct cttataccaa tatatttcta cgccttcagg aatgagtgag
      301 tggtacgccg ataatgtgaa ttctcgcgga caactcttta cgtttatttg ggagggaagc
      361 gaggaacagg ccaaactttt agggaaaaaa actggagagc gcataaaatt tagatggctt
      421 gatgacgagg acacggacta ctttttcgaa ctcagaattc aggtcgatga cattaccaag
      481 gacgtttctt taatgatcac agactttgcc gaagaagatg aagtcgaaga agggaagatg
      541 ctttgggaaa atatggtttc taatcttaaa cacgttttgg ggagtgccta gagcatattg
      601 ccttatcttt gcgccaccca agggtggctt tttttatgat aaattttaac ggaaccatac
      661 acgataaaga agaaataacg ccgagcttac acaatcgtgg actgcattat ggcgatgctc
      721 tttttgagac catgaaggtg gtgggccgtc gcattttatt tgcagaggcc cattattttc
      781 gtttgatggc atcgatgcgt ctaatgcgca tggaaattcc gatgcattgg acccctgaat
      841 tttttcaaag tgagatcaat aaaacgctca aagggcaggg cggccattca attcatcgtg
      901 ttaaaatact cgtttggcgt gattggggtg gtcgatatac gccacattcg gaaggggttt
      961 cttatgccat ttttacggag gccctagctc aggctcctta tattttagag gacaaagcgt
     1021 ataaagtgga cttgtataag gaccattacg tgaacaaggg tatgctcgag cagctcaaaa
     1081 caaacaataa gctgactcat gttttggcag ggatttatgc tacagaaaac gactaccaaa
     1141 gttgtctgct tttgaatcat gccaaacaag tggttgaatc aataagtggc aacatctttc
     1201 tggtaaaaga ctataagatt aaaacgccac cgctctctga cggttgtcta aaaggaatca
     1261 tgcgcggtgt cttgatagaa attttggcca agcacccaga ctatatctta agccaagaat
     1321 caatttcacc gtttgaactt caaaaggcag atgagttgtt tttgaccaac gccattacag
     1381 ggattcaacc gatcactcaa taccgtaaaa agcaatacgc caaaaaggtg agttcggaat
     1441 taatagaaaa gctcaatgaa tatgcagggc taagccctag ttcatcgcag gattctcggg
     1501 ggcattagac cacatcgcgt aagccccacc caaagcattc atcgtattcc gccaatagtt
     1561 ttgatctgtt tttacgattt gatccgagtg cagatcattc ggcatgacca gccaattatt
     1621 ttgctgccat tcctcttcga gctgttcagg accccatccc gaataaccca aaaagaattg
     1681 aatttggtca ttggtcaata aacccttatt gaggagctcg ataatttgag taaaatcacc
     1741 gccccaataa attccaaaat cgatgtagac actgtggtca attaagtcag gtgcattgtg
     1801 gatgaaatag aggttatctt gctccacggg tcctccattg aagacaggaa tcgtggggga
     1861 tacctctggg accagatcgt tcaaatcata gcgcagcggc ttatttaata taaacccaat
     1921 cgacccctca tgattgtgtt ctgctaataa aattgccgag cgattaaaag ataaatcacc
     1981 gataatcgag ggttcggcaa taagcaaata ccccttaagg ggtttgatgt tttggttagg
     2041 agccatatac taaagctaca tcaaataagt tatttataca actatttgat tttcaagcat
     2101 aaaaaaaccc cgccgaggca gggtgtattt tttacatcaa agtgattaat tcacgctgtc
     2161 tgaaagctca gaacctgctt tgaatttcac aacattttta gcggcaattt tgatggtttt
     2221 tcctgtttgt gggtttcttc cttctctggc agcacgctta gatactgacc aagatccgaa
     2281 tccaacaaga gaaacacggt ttccaccttt caacgatcct tctacgttac ctaggaaaga
     2341 ttctaatgct ttttttgcag ctgctttagt gataccagca tcagcggcca ttgcgtcgat
     2401 taaatcagat ttgttcatac aataaaattt aaattaaaat tttggttaaa cttgcatata
     2461 attgctttac aaatttaacg ggttaatcca gtcacgcaag gaaacaccaa ggaaaacgcg
     2521 gtttttgtta ataaatcaac cccattgttg ataaagtaag atcaatccgt caattttttc
     2581 gccaaatcag taatgacaag ggtttagacg aatttatcct ctttttcaaa actatagcca
     2641 tttagaagag actcaatggg catttttttc ttgcccggaa gttgtaatat tttaatcgcc
     2701 agctgctgat ctgcggtatg cacgaggagt gattttttat cacagctcag gctgcccggt
     2761 gttaatactg aactgaggcc tgtactctgg acttgataaa ttttgacttt aacggcctgt
     2821 tcgttgcgta ttaaagtggt ccatgctcca ggataggagt ccaaaccgcg aatgagatta
     2881 actatttgtt tagcgggtga atcccaaatg attctcgtgt tctctggatt taatttagga
     2941 gcactcctga gctgatcaga gtccttttgc gctttggagt gcgccctatt gttagcaatg
     3001 gcttccagcg tttttattac gagctgagtt cccgctacca ttaacttatc gtgtaggctt
     3061 gaggcattgt cttcactttg gattgggcat gggatgctgt caataatggc cccggtatca
     3121 atctggtgat caatgaaaaa tgtggtcaca ccagtttttg tctctccgtt aattatggcc
     3181 cagttaattg gggcggctcc tctgtactgc ggcagcaatg aagcatgtaa gttgaaggtt
     3241 cctttttttg gaatcttcca aaggacctct ggcagcatgc gaaacgcgac gacaacgaaa
     3301 acatctggat tcagctctcg gagcgttttt aagaactcag gatcttttaa actttcaggt
     3361 tgccaaacct gaagttgatg cccaagggct gcgtttttaa ccgcactggg ttgaagactg
     3421 cgtccacgac ctgcagggcg gtctggggcc gtgaccacgc cgagcacaag atagttgtgt
     3481 tcgactaact tattcagcac ccccacagca aagtctgggg tccccataaa tattatcctc
     3541 aaaggctttg tcatcgtaaa aagtatctgt tggcggcgtc aatgcctatt ttttgttcgt
     3601 tatgcagata ggtcaataca gtatcaatat caatagggtc aaagttaata ttttctctaa
     3661 gctcaaagat ggttaagttc tggtctttga gtagattcaa tataagctcg gctatagcgt
     3721 ggcctgcatt cgcgctgctt tgtttttttc ttgacagaca attggagcat tggccacagt
     3781 cggtgtttaa gacttgccca aagtatcgcg ctaatgtttg ttttaaacag ccctgtgatt
     3841 ggtgaataaa gtctaaaaca tcacgttctt gagcgcgaac ccgctttgca tgacgctcga
     3901 taatagcgcg atggggattc acgctgcgcg catcttcccg cggcagtaaa aaggtcagtt
     3961 gcaaatctgt ttggaacatc tctaaatcga tgagctctct ttgctgcatc caaatcagag
     4021 cggctttaat ttgctcaata gtgactccag tttttcgagc caattgataa agatcaatgg
     4081 atattttgct ttgaaaaacg ccgccgtaga gtcttaatat attgcgtccg atcatacccg
     4141 ccccaggatt gtcgtctaaa gcgtcattta aaaacgtatt ttccgcaatg aattgaagac
     4201 gtgttttact gccgtattga tgttttagtg aaattatccc aattcgatct agaatgttta
     4261 gcgcagccat tgctttagtg ggattcaagt cataaatagt gcaaaactca ccaacagcga
     4321 ggccaaagat ttcaccggcc ccttcaccgt aagcaatttg aaaataatta cacagatggc
     4381 ggtaaaactg tttgatatcc tctgtgttca agatttgatt ttttttgcgc cttttgaact
     4441 gggctatatc gtgttgatga tagattaacc aggcctgggc cggagcgcca tcccgaccgg
     4501 cacgcccgat ttcttggata taactctcaa tcgcatcggg aacaaaagtg tgaatgacaa
     4561 atcgaacccc cgcatggtta atgcccatac caaaggcact ggttgccacc attacctggg
     4621 ccggtcgggt taaccaattt tttaaggccg tttgtttttg tttttgatcc atgcctccgt
     4681 gaaaaaacgc acaatcaagt cctttgtttt ttaagttatg ggcatattgc tcactgagtt
     4741 ttcttgtggg cacatagaca attccggagc ctttttgcgc ttttgaaata gccaaaattc
     4801 tctcaaacac atcctctcgc tgctcaatga atagctgaat gttttctttg atcagggggc
     4861 ggctaaaaat ttttggttcc cttaattcaa gggcgtttgt aatttctgct gtaatttctt
     4921 cagtggccgt tccagttaag gccaaaatgg gcgtctgagg ttgaagttga cgcaatactt
     4981 tgagttgttg gtaggcaggt cgaaaatcga acccccattg cgnnnnnnnn nnnnnnnnnn
     5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn natgcgcttc atcaatagcc
     5161 caaagattga tgtctattgt ttttaaaaaa tccagaacta attcttgttt gagacgctcg
     5221 ggagcaacat ataaaaattt ataaccccca tgccgaaata gatcaaaaat gcgcatcatt
     5281 tcttctgggg attggggtcc tgccagggcg atggccttaa tgttgcgccc cataagatcg
     5341 tttacctgat cttccattag cgctactagg ggagagatca ccacgcaaat accttcattg
     5401 agcaggccag gaatctgata acaaagagac ttgccgcttc ccgtaggcag cacggccaaa
     5461 acatcttggc aggaaactaa agcgttgata atgtcct
//
LOCUS       DPUP01000097            5826 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_27504,
            whole genome shotgun sequence.
ACCESSION   DPUP01000097 DPUP01000000
VERSION     DPUP01000097.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5826)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5826)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5826
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>270
                     /locus_tag="DHV98_03275"
     CDS             <1..>270
                     /locus_tag="DHV98_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006990087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCK05394.1"
                     /translation="YDALLNERIHNLMPELMDRHGIDMWILISREYNEDPILRTMLPA
                     TWLNARRRTIILYYRDAQKNIFEALAVARYGIGQTIKSAWDIEQQP"
     assembly_gap    271..439
                     /estimated_length=169
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <440..1345
                     /locus_tag="DHV98_03280"
     CDS             <440..1345
                     /locus_tag="DHV98_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HCK05395.1"
                     /translation="IGLNISEDYGIADGLVKTDYEEFMGHLPEELAARIVSAEPLAVS
                     WVETRTDTEMKEFEALVQVTHDIIAEAFSSKVITPGKTTSEEVVWWLRQKVRDMGLDT
                     WFHPTVDIQRDSEALKSHIEAFSNGYEETVIQPGDLLHCDFGVSYLGLNTDCQQHAYV
                     PFPGEKQVPEFLSQAFASGNRVQDLFTDSFGYGLTGNSILRTALEKGRAEGLRPSIYT
                     HPLGSFGHSAGTTLGMWDAQGGVLGSGDHPMAYKTAYAIELNNTIFVPKWNKDVRIML
                     EEAGYFDTHGFRYVNGRQESIRLVR"
     gene            complement(1386..3014)
                     /locus_tag="DHV98_03285"
     CDS             complement(1386..3014)
                     /locus_tag="DHV98_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008240697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylcrotonoyl-CoA carboxylase"
                     /protein_id="HCK05396.1"
                     /translation="MDLDFNRNEDHNKLLASDLRKRLQKVALGGGNTAIEKQHAKGKL
                     TARERIDYLLDKNRETIEIGAFAGDKMYPEHGGCPSGGVVVKMGYIKKRLCIVVANDA
                     TVKAGAWFPITAKKNLRAQEIALENKIPIIYLVDSAGVYLPMQDEIFPDKEHFGRIFR
                     NNAKMSSAGITQISAIMGSCVAGGAYLPIMSDEAMIVDKTGSIFLAGSYLVKAAIGET
                     IDNETLGGATTHCAISGVTDYKYDNDQQALDAIRNIIDKIGAPDSAGFNRTTPVLPQI
                     ESDQLFGLLPKSRSDQYDMMEIIKALVDDSQFDAYKADYGKTIITGYARINGWAVGIV
                     ANQRKVVKTQKGEMQFGGVIYSDSADKATRFISNCNQKKIPLVFLQDVTGFMVGSKSE
                     HGGIIKDGAKMVNAVSNSVVPKFTIIVGNSYGAGNYAMCGKAYDPRLIAAWPSAELAV
                     MSGNSAAKVLLQIETAQNNKKGTQMSPEEEETLYQEIKARYDEQISPYYAAARLWTDA
                     VINPIETRKWISMGIEAANHAPITQPFNLGVIQV"
     gene            3156..3335
                     /locus_tag="DHV98_03290"
     CDS             3156..3335
                     /locus_tag="DHV98_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05397.1"
                     /translation="MMNKNTVLAWATFIMMLMGCLLIALGAFRYEDVAGWGFACVGFG
                     FFAIAWVFNALKGRV"
     gene            3381..5069
                     /locus_tag="DHV98_03295"
     CDS             3381..5069
                     /locus_tag="DHV98_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013552135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HCK05398.1"
                     /translation="MADDQKVIFSMSGVSKTFQSAQTPVLKNIYLSFFYGAKIGILGL
                     NGSGKSTLLKIIAGQDKNHQGDVVFAPGYTVGLLDQEPDLDPDKTVLDIVKEGVKEVV
                     AVLDRYNEINDAFGLPEVYENPDKMEALMNEQAKLQDQIDAVNAWELDTKLEIAMDAL
                     RTPEPETKISVLSGGERRRVALCRLLLQEPDVLLLDEPTNHLDAESVHWLEQHLAQYK
                     GTVIAVTHDRYFLDNVAGWILELDRGEGIPWKGNYSSWLEQKSKRLAQEQKQASKRQK
                     TLERELEWVRMAPKGRQSKQKARLNNYEKLMSQDQKQLDEHLEIYIPNGPRLGTEVIQ
                     AKGVKKAFGDKLLYESLDFQLPQAGIVGVIGPNGAGKTTIFKMIMNELAPDEGTFTVG
                     PTAKIAYVDQAHANIDAQKTIWENFSDGQELVMMGGRQVNSRAYLSRFNFSGSEQNKK
                     VDKLSGGERNRLHLAMTLKEEGNVLLLDEPTNDLDVNTLRALEEGLENFAGCAVVISH
                     DRWFLDRICTHILAFEGDSQVYFFEGGFSDYEENRKKRLGDAGPKRIKYKKLIR"
     gene            5069..5767
                     /locus_tag="DHV98_03300"
     CDS             5069..5767
                     /locus_tag="DHV98_03300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HCK05399.1"
                     /translation="MDHEQIKVIAFDADDTLWENETLFRQAEQRFCELMGGFLNAATC
                     EKELFAIEMKNLPLYGYGIKPFTLSLVEAAISLSEGRVTNDILQKIIKLGQDMLQAPN
                     PLLAGVDEVLTKLKGSYRLVVATKGDLLDQERKLERSGLAKYFHHIEVMSDKKPKNYQ
                     KLVAHLDINPSEFLMVGNSVNSDILPVLEIGASTVHIPFHTTWAHEVGKEPIDHPKYV
                     KINSMNELRSLLGF"
BASE COUNT         1518 a         1199 c         1347 g         1593 t
ORIGIN      
        1 ctatgatgcc cttttaaatg aacgtattca taatttaatg cccgaactca tggatcgcca
       61 tggaattgat atgtggatct tgatttcgcg tgaatataat gaggatccaa ttttacggac
      121 tatgttaccc gctacttggc tcaatgcaag aagacgtacc ataatattgt attaccgcga
      181 tgcccaaaaa aatatttttg aggcgctggc tgtggctcgt tatggtatcg gtcaaacaat
      241 aaaatctgct tgggatatag aacaacagcc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnna ttggcttgaa catctcagag gattacggca ttgctgatgg
      481 actcgttaaa actgattatg aagaatttat ggggcatttg cctgaggaat tagctgcgcg
      541 tatcgtttct gcagagcctc tagcggtttc ttgggttgaa acgagaaccg atacggaaat
      601 gaaggaattt gaggcgcttg ttcaggtgac tcacgacatt atcgcagaag ccttttcatc
      661 aaaggtaatc acacccggta aaacgaccag tgaggaagtg gtttggtggt tgcgccaaaa
      721 agtaagagat atgggattgg acacttggtt ccatcccaca gtggatattc agcgcgatag
      781 tgaagcctta aaaagtcata ttgaggcgtt ttcaaatggt tatgaagaaa ccgttattca
      841 gccaggagat ttgttgcact gtgattttgg ggtcagttat ttaggcctca atacggattg
      901 tcaacaacac gcttatgtgc cttttccagg agaaaagcag gtgcctgaat ttttaagtca
      961 agcctttgcc tctggaaatc gcgttcagga tttatttacc gattcctttg gttatgggct
     1021 caccggaaat agcattttac gcaccgctct tgaaaaagga cgtgccgaag gtcttagacc
     1081 gtctatttat actcatcctt tagggagttt tggccatagt gcgggaacga cccttgggat
     1141 gtgggacgca caggggggtg tccttgggtc cggggatcac ccgatggcct ataaaacggc
     1201 ttacgccatt gaactgaaca acaccatttt tgtcccaaaa tggaataagg acgtccgcat
     1261 tatgcttgaa gaggcgggtt actttgatac gcatgggttt cgctatgtaa acgggcgtca
     1321 agaatctatt cgcctggtgc gctaggactg aatcgctcaa ctatgtaagg tgttgacagg
     1381 gcaatttata cctggattac cccaagatta aatggctgag tgatcggggc gtgattcgca
     1441 gcctcaatgc ccattgaaat ccattttcgc gtttctatcg gattgatgac ggcatcagtc
     1501 caaagtctgg ccgctgcata atagggtgaa atttgttcat cgtatcgcgc cttaatttct
     1561 tgataaaggg tctcttcctc ttcggggctc atttgggtgc cctttttatt attttgagct
     1621 gtttcgattt gaagcaaaac tttggccgca ctgttaccgc tcattaccgc aagttctgca
     1681 ctgggccaag cggcgataag tctcggatcg taggcttttc cacacatggc ataattaccc
     1741 gctccatatg aattgccgac gataatggta aatttcggca cgacagaatt actcacggca
     1801 ttgaccattt tagcgccatc tttgatgatg ccgccgtgtt cacttttgct gccgaccata
     1861 aatccagtga cgtcttgtaa aaagactaac ggaatttttt tctgattgca atttgagata
     1921 aatcgtgtgg ctttatctgc gctatcgctg taaatgaccc cgccaaactg catctcacct
     1981 ttttgggttt taaccacttt tcgttgattg gctacaatcc ccacagccca tccgttaata
     2041 cgcgcatatc cggtaatgat ggttttaccg taatctgcct tataggcatc aaactgtgaa
     2101 tcatcgacga gtgccttgat gatttccatc atatcgtact gatccgaacg tgatttgggc
     2161 aagaggccaa acaattgatc cgattcaatt tgtggcaaga cgggcgtggt tcggttaaaa
     2221 ccagcactgt ctggcgcccc gattttatca ataatatttc taatggcgtc taaggcctgt
     2281 tggtcattgt cgtatttata atcggttaca ccactgatgg cgcaatgggt ggtcgcgccc
     2341 ccgagggttt cgttgtcaat ggtttctcca atggcggcct tgaccaaata acttcctgcc
     2401 aaaaagatac tccccgtttt atccacaatc atggcctcat cgctcataat gggtaaataa
     2461 gcgcctccgg caacacagct ccccataatt gctgagattt gtgtaatccc ggcactgctc
     2521 attttggcat tgtttctaaa gatgcgtcca aagtgctcct tatctgggaa aatctcatcc
     2581 tgcatcggca ggtagacccc agcgctgtct acgaggtaaa taatgggaat tttattttct
     2641 agggcaattt cttgtgcccg cagattcttt ttggccgtaa tagggaacca cgcgcccgct
     2701 ttgactgtgg cgtcattagc caccacgata caaagccgtt tttttatgta gcccattttt
     2761 acgacgaccc ctccgctcgg acaccccccg tgctcgggat acattttatc acccgcaaag
     2821 gccccgatct caatagtttc ccggttttta tccagcaagt agtcgatccg ttctctggcg
     2881 gttagtttgc ctttggcgtg ctgtttttct atggctgtat tcccgccacc aagggctact
     2941 ttttgcaatc gcttacgcaa gtctgaggcc aacaatttgt tgtgatcttc gttgcgatta
     3001 aagtctaaat ccatagaaaa tttgtttatt caaaaatacg aattgcccat caaaatctcc
     3061 ctaaatctcg taagaattcc cgatatttgt gaggttaggc tcgtcttata gtgcgtctaa
     3121 tttctgcgtt ttatcgcata tttaattggt aaattatgat gaataaaaac actgtacttg
     3181 cttgggcgac gttcataatg atgcttatgg gatgcctgct catcgctctt ggagcgtttc
     3241 gatatgaaga tgttgccgga tggggctttg cctgcgttgg attcggtttt tttgccattg
     3301 cctgggtgtt taatgccctt aaaggtcgcg tttgatcgaa acagtttttt ccagtttaat
     3361 atttaaaaaa gattaaagtt atggccgacg atcagaaggt tatcttttct atgtccgggg
     3421 tgagtaagac gtttcaaagc gcacaaactc cggtccttaa aaacatctat ttaagtttct
     3481 tttacggggc aaaaatcggg atcctggggc ttaacgggag tggaaaatca accctgctta
     3541 agattatagc gggtcaagat aagaaccatc aaggggatgt ggtctttgct cctggataca
     3601 ctgttggtct cctggatcag gagcctgatt tggatcctga taaaacagta ctcgatattg
     3661 taaaagaggg agtgaaagag gtagtagcgg tactggatcg ttacaacgaa atcaacgatg
     3721 cctttggtct tcctgaagtt tatgaaaatc cggacaaaat ggaggcctta atgaatgagc
     3781 aagcgaagct tcaagatcaa atcgatgcgg ttaatgcatg ggagctggac acgaaattag
     3841 aaattgctat ggatgccctt cgcaccccgg agccggagac taaaatttct gtattgtcag
     3901 gaggggagcg ccgtcgagtg gctctttgtc gtttgctgct ccaggagcct gatgtcttgc
     3961 tgctcgatga gccgaccaac catttagatg cagaaagtgt ccattggcta gaacaacatt
     4021 tggcacagta taaaggcacc gttatcgcgg taacccacga tcgatatttc ttggacaacg
     4081 ttgccggctg gattttggaa ctcgatcgcg gtgaagggat tccttggaaa ggaaattatt
     4141 cttcttggct tgagcaaaag tccaaaagac tggcccaaga acaaaaacaa gccagtaaac
     4201 gtcaaaaaac gcttgagcgc gaattagaat gggtacgcat ggcgcccaaa ggacgccaat
     4261 ccaaacaaaa ggcccgtttg aataactatg aaaagctcat gagtcaagat caaaagcaac
     4321 ttgacgagca tttagaaatc tatatcccga atggtccacg actgggaact gaggtgattc
     4381 aggccaaagg cgttaaaaaa gcattcggtg ataagttact ttatgagtct ttagattttc
     4441 aattgcccca ggcgggaatt gttggcgtaa ttggtccaaa tggtgcggga aagacgacga
     4501 ttttcaaaat gattatgaat gagttggccc ccgatgaagg aacctttacc gtgggaccaa
     4561 cggcaaaaat tgcttatgtg gaccaagccc atgccaacat tgatgcccaa aagaccattt
     4621 gggagaattt cagcgatgga caagagcttg tgatgatggg gggacgtcag gtgaattcta
     4681 gagcttattt gagtcgtttt aatttttcag gaagcgaaca aaacaaaaaa gtggataaac
     4741 tttccggagg agagcgaaac cgccttcatt tagccatgac ccttaaggaa gaaggtaatg
     4801 ttttgctttt agatgagccc accaatgacc ttgatgtcaa cactttacgt gctttagaag
     4861 aaggtttaga gaattttgcg ggctgtgctg tagtgatcag ccacgatcgt tggtttcttg
     4921 atcgaatatg cacgcatata ctcgcctttg aaggggatag ccaggtttac ttctttgaag
     4981 gcggctttag cgattacgaa gaaaatcgca agaagcgttt gggggatgca ggaccaaaac
     5041 gaatcaaata caaaaaactc atacgttgat cgatcacgag caaataaagg tgattgcctt
     5101 tgatgcagac gacacgcttt gggaaaacga aacgctgttt cgtcaggctg aacagcgatt
     5161 ttgtgaatta atgggtggtt ttctgaacgc agccacctgt gaaaaggaac tttttgccat
     5221 tgagatgaaa aatctaccgc tatatgggta tggcataaag ccctttactc tttccctggt
     5281 cgaggcggct ataagtttaa gcgagggtcg cgtaaccaat gatattcttc agaaaattat
     5341 aaaacttgga caagacatgc ttcaagcgcc caatccatta ttggcgggag tcgatgaagt
     5401 ccttaccaaa cttaaggggt cctatcgatt ggtcgtggcc accaagggtg atctactcga
     5461 tcaagaacgt aaattagagc gctcgggctt agcaaagtat tttcatcaca ttgaagtgat
     5521 gtccgataaa aagcccaaga attatcaaaa gttggtggcg cacctcgaca ttaatcccag
     5581 cgaatttctc atggtgggca atagtgtcaa tagtgatata ctgccggtcc ttgagattgg
     5641 cgcctctaca gtacacatcc catttcacac gacttgggcc catgaggtgg gtaaagaacc
     5701 gattgaccac ccgaaatacg ttaaaatcaa ttcgatgaat gaattgcggt cactcctagg
     5761 tttttaaaga ccatgggcct aagggttgcg atcgagttcc tcttgaaaag cctcaataaa
     5821 gtctgc
//
LOCUS       DPUP01000098            5954 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_25240,
            whole genome shotgun sequence.
ACCESSION   DPUP01000098 DPUP01000000
VERSION     DPUP01000098.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5954)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5954)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5954
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>241)
                     /locus_tag="DHV98_03305"
     CDS             complement(<1..>241)
                     /locus_tag="DHV98_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HCK05400.1"
                     /translation="ERRTQYVPGASYMFVANHVSMIDIMLMLYVANRPFVFVGKKELA
                     KIPIFGFFYRRGCILVDRNDPASRRSVYAQAQKRLS"
     assembly_gap    242..435
                     /estimated_length=194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<436..650)
                     /locus_tag="DHV98_03310"
     CDS             complement(<436..650)
                     /locus_tag="DHV98_03310"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HCK05401.1"
                     /translation="MKLIQYLLMPFYRAWFYLLVMVGITLFSPLLFLGTVRERWYKIY
                     FTGARLWGMFVLFGMGFIPKVERRTQYV"
     gene            721..1692
                     /gene="trpS"
                     /locus_tag="DHV98_03315"
     CDS             721..1692
                     /gene="trpS"
                     /locus_tag="DHV98_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HCK05402.1"
                     /translation="MSRILTGIQSTGTPHLGNILGAILPAIEMANNPKNESFLFIADL
                     HSLTQIKDGTTLKDNTYRTAAAWLAFGLDIQQTVFYRQSDVPLATELAWYLGCFFPYQ
                     RLTLAHSFKDKAERLEDVNAGLFNYPMLMAADILLYDAEIVPVGKDQLQHIEMTRDVA
                     SRVHAKIGKELFVLPEAKISEATQLIPGTDGEKMSKSKNNVIDIFLPEKALRKQIMGI
                     ATDSTPLEAPKDPESCNVFALYRLLAQPNQIEAMAQNYAQGGYGYGHAKQALFELIID
                     KFGPQREAFTEMVYDTKQLDELLAIGAAKAQKVASEVMGRVREHLGY"
     gene            complement(1658..2785)
                     /gene="dprA"
                     /locus_tag="DHV98_03320"
     CDS             complement(1658..2785)
                     /gene="dprA"
                     /locus_tag="DHV98_03320"
                     /inference="COORDINATES: protein motif:HMM:TIGR00732"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HCK05403.1"
                     /translation="MEELKALQQLYAIHRTKGIGIRSAKALIQFFGGLDGVFKFDNRP
                     EALSAHAKLYASRVHLKRFFESSECRETAHREHEFMRRNGIELLPFDQAHFPNLLSQC
                     PDAPLALMVQGALPKAQYWVSVVGTRRATAFGLDFCRSVIKELAPLNPVIVSGLAKGI
                     DFYAHKAALDLGLTTVACLAHGLNQIYPKEHHTLAKEIEKQGALITEFWSSSEFHPSN
                     FLQRNRIIAGLSHVTLVVESGTKGGSLITAQFANEYHREVFAVPGSPNQSAFAGCNEL
                     IKNHQAHLMTETADIVRIMGWKKTLDQREILVNIDQTQRAILTKVNAQPYIHKDELSR
                     SLNLNAGMLQGALLNLEISGLLLTQSGCCLLSNRGVRALAP"
     gene            2899..3801
                     /locus_tag="DHV98_03325"
     CDS             2899..3801
                     /locus_tag="DHV98_03325"
                     /inference="COORDINATES: protein motif:HMM:PF05036.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HCK05404.1"
                     /translation="MEVFKHIKHLLYRYECVILPGFGAFITRSHSAVIQPDGLLVPPG
                     KTVFFNRQLQTNDGLLAHHLAHAEGITYALALEKIRLFSARLLEGLNQGSIIDCAPLG
                     HFEVKEQGLLRFEAADQMNLATKSFGLTSVLTHPIDRSESDTPIIPIHRAKSGAQSLW
                     RYAAIGLIALSLGGYGATYRYNQSVMAYNQNLEAQAQDYVQAQIQQATFTPNIDPAII
                     SVTIESPQGPYHLVAGAFRIEENALRKVAQLQEKGHEARIIGQNKYGLHQVVFSSFAD
                     RSQALNALSQIRAKENKEAWLLVQ"
     gene            3823..4335
                     /locus_tag="DHV98_03330"
     CDS             3823..4335
                     /locus_tag="DHV98_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HCK05405.1"
                     /translation="MTPRTPSESRTTLTDLVLPSETNPIGNMFGGELLARMDRAASIA
                     ARRHSRQIVVTVSVNHVAFNKMIPLGSVVTVEASISRAFKTSMEVFMDVWLEDRQSGE
                     RTKANEAIFTFVAVDEQGQPVQVPEITPETPLEKERYAAALRRRQLSLVLAGKLKAHD
                     ATELKAIFEQ"
     gene            4348..4989
                     /locus_tag="DHV98_03335"
     CDS             4348..4989
                     /locus_tag="DHV98_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HCK05406.1"
                     /translation="MLHDLQQSYGGLFEKALIEEINQVGTFREVPEGFLLIDFGQYNR
                     SMPLLMSGAIKVSREDPHGNELLLYFLEEGDTCAMTLNCCLGQTQSEIRAVAERDTKL
                     IMVPIQKMEEWTGKYRSWRNFVFESYHNRLMEMLESIDSIAFLRMDERLIKCLKEKVA
                     VNHSAILHTTHKEIAHDLHTSRVVISRLLKTLENNGAIKLHRNNIEVLETDQN"
     gene            5059..>5666
                     /locus_tag="DHV98_03340"
     CDS             5059..>5666
                     /locus_tag="DHV98_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003442453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCK05407.1"
                     /translation="MEIHLILGYFGAILIGVVLGLIGGGGSILTLPVLVYLFGIEPVI
                     ATAYSLFIVGVAAVAGTLKNMSQKLVDFKTALIFALPAFIAVYLTRRYLVPSLPDLLL
                     SLGDFSLSKDVGIMVFFAIIMVLASVSMIRDRRKEADADSEKTEPKYNYPLIVLEGFV
                     VGVLTGIVGAGGGFLIIPALVLLAKLPMKKAVATSLLIIAIK"
     assembly_gap    5667..5795
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5796..>5954
                     /locus_tag="DHV98_03345"
     CDS             <5796..>5954
                     /locus_tag="DHV98_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCK05408.1"
                     /translation="LIIAIKSLIGFIGDIQVIEIDWIFLLIFALLSVVGIFIGVRLNQ
                     IVPGQKLK"
BASE COUNT         1651 a         1245 c         1212 g         1523 t
ORIGIN      
        1 gacaatcttt tttgcgcttg agcataaaca gatctgcgtg aagcaggatc atttctatcg
       61 acaagaatac agccccgacg ataaaaaaat ccgaaaatag gaattttagc gagctctttt
      121 ttgccgacaa aaacaaaagg ccgattggct acatagagca taagcataat gtcaatcata
      181 gaaacatgat tggccacgaa catataactc gctccaggaa catattgagt acgacgctct
      241 annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnacata ttgagtacga cgctctacct ttggaataaa acccatgcca
      481 aaaagcacga acatccccca caagcgtgct ccagtaaaat aaattttata ccaacgctca
      541 cgaacagttc ctaaaaatag caaaggagag aataaagtaa tccctaccat cactaagagg
      601 taaaaccagg cacggtaaaa gggcattagc aggtattgga taagcttcat gaattcaaaa
      661 ataaggattt gaattaagtg aataacacaa aaaaattacc tttgcacaaa agcggtaaaa
      721 atgtccagaa ttttaacggg aattcaaagt acgggaaccc ctcacctagg gaatatttta
      781 ggagccattt taccggcgat tgaaatggcc aataacccaa aaaacgaatc tttcctgttt
      841 atcgcagact tgcattcttt aactcaaatc aaggacggta caacccttaa agacaatacc
      901 tacaggacag ccgcggcttg gctggctttc ggtttagaca tacaacaaac agtgttttat
      961 cgccaaagtg atgtgcccct cgctacggag ttagcgtggt atttagggtg tttcttccct
     1021 taccaaagac tgactctagc ccatagtttt aaggataagg ctgaacgctt ggaagatgtg
     1081 aacgcaggac tttttaacta tcccatgcta atggctgccg atattttgct ctatgacgca
     1141 gaaatagttc ccgtgggcaa ggaccaattg caacatattg aaatgacaag ggatgttgct
     1201 tcaagagttc acgccaagat tggaaaagaa ttatttgtac tgccagaggc aaaaatttct
     1261 gaagccaccc agctcattcc tggaacggac ggtgagaaaa tgagcaaatc caaaaataat
     1321 gtgatcgata ttttcttacc tgaaaaggcg ctgagaaaac aaatcatggg tattgccacg
     1381 gacagcactc cactggaagc ccccaaagat cccgaatcct gtaacgtgtt tgctttatat
     1441 cgcctcttgg cacagccaaa tcaaatcgaa gcgatggctc aaaattatgc gcaaggcggt
     1501 tatggctatg ggcatgccaa acaagccctt tttgagctga ttattgataa atttggccct
     1561 caaagagagg cgtttactga aatggtttac gacaccaaac aattagacga actcctggct
     1621 attggggccg caaaggcgca aaaagtagcg agtgaggtta tggggcgagt gcgcgaacac
     1681 ctcggttact gagcaaacaa caaccggatt gggtcaacaa aagtccggat atctccaggt
     1741 ttaacaaagc gccttggagc atacccgcat ttaaatttaa actacgcgat aattcatctt
     1801 tgtggatata gggctgggca ttaaccttcg ttaaaatggc tcgttgtgtc tgatctatgt
     1861 tcaccaatat ttcccgctga tctagggtct ttttccatcc cataatacgc acaatatctg
     1921 cagtttctgt catcaaatgc gcttggtgat ttttaatcag ttcgttacaa cccgcaaaag
     1981 cactttgatt gggactcccg ggtacggcaa aaacttctcg atgatactca ttggcaaatt
     2041 gagctgtaat caagcttccg cctttggttc cggattcaac caccaaggtc acatggctca
     2101 atcctgcaat aattcgattg cgctgcaaaa aattacttgg atgaaattct gaacttgacc
     2161 aaaactcagt gattaaggcc ccctgctttt caatctcttt tgccagagta tgatgttctt
     2221 taggataaat ttgattcagc ccatgggcca agcaagccac cgtggttaag cctaaatcta
     2281 gagccgcctt atgagcataa aaatcgatgc ccttggccaa acccgagaca attaccggat
     2341 ttaatggggc caattctttg attactgaac gacaaaagtc cagcccaaag gctgtggcac
     2401 gacgagtccc tacaacactc acccagtatt gtgctttagg cagtgctcct tgcaccatga
     2461 gggccaaagg ggcgtcggga cactggctca gtaaattcgg aaaatgcgcc tgatcaaacg
     2521 gcaggagctc aatgccattt cggcgcataa attcatgctc gcgatgtgcc gtttctcggc
     2581 actcagaaga ctcgaaaaaa cgctttaagt ggactctcga agcgtatagt ttggcgtgag
     2641 ccgataatgc ttcgggcctg ttgtcaaatt taaaaacacc atctaaaccc ccaaaaaatt
     2701 gaattagagc ctttgcagac cgaatcccaa tccctttggt ccgatgaata gcgtacagtt
     2761 gttggagcgc cttgagctct tccatatttc aattccgata acattcaggg gagtttttct
     2821 aaatagataa ctttaattgt tcaaaattat tacgctcagg ggttgattgc cgcggaaaaa
     2881 aaaattaagt ttgtttagat ggaagttttc aagcacataa agcatttact gtatcgttat
     2941 gagtgcgtga tattgcccgg ttttggggcc tttatcacac gcagtcacag cgctgtaatt
     3001 cagcctgatg gccttttggt tccgcccgga aaaacagtgt ttttcaatag acagttacaa
     3061 acgaatgacg gccttttagc ccatcacttg gcccatgcag aagggataac gtacgcgctt
     3121 gctttagaaa aaatccgact ctttagcgct cgtttgttag aaggtttaaa tcaaggttca
     3181 attattgatt gtgccccgct agggcatttt gaggtcaaag aacaaggatt actccgcttt
     3241 gaggccgcgg accaaatgaa tttggccacc aaatcgtttg gattaacttc cgtattaacc
     3301 caccctattg accggtctga gtccgacaca ccgattattc caatccatcg tgctaaatca
     3361 ggggcgcaaa gtttatggcg ctacgctgcc atcggtttga ttgcgctcag ccttggaggc
     3421 tacggagcaa cttatcgcta caatcaatcg gtaatggctt ataatcaaaa ccttgaggcc
     3481 caggcccagg attacgttca agcgcaaatt cagcaagcta cctttacgcc aaatattgac
     3541 ccggcgatca tttctgtaac catagagtcc cctcaaggac catatcacct tgtcgcagga
     3601 gcctttcgaa ttgaggagaa cgccctacga aaagtcgctc aactacaaga aaaaggacac
     3661 gaggccagaa ttattggtca aaataaatac gggttgcatc aagtggtttt ttcctctttt
     3721 gcagaccgtt ctcaagcttt aaacgcttta tcacagattc gcgccaaaga aaacaaagaa
     3781 gcttggctgt tagtgcaata aggcccttaa ccccattata ttatgacccc tagaacccca
     3841 tcagagtcca gaacgacgtt gactgacttg gtattgccta gtgaaaccaa ccccataggc
     3901 aatatgtttg ggggagaact tttagcgcgc atggaccgcg cggcaagtat tgccgcgcga
     3961 cgacacagta ggcaaatcgt ggttacggtg tccgtaaatc acgtggcctt taacaaaatg
     4021 attcctttag gcagtgtcgt cacggttgaa gcatctattt caagagcatt taaaacctct
     4081 atggaggttt ttatggatgt ttggctagag gatcggcaaa gcggtgagcg gaccaaagcc
     4141 aacgaagcca ttttcacctt tgttgctgta gatgagcaag gtcagcctgt tcaagttccc
     4201 gaaatcactc cggaaactcc tttagaaaaa gaacgttatg ccgccgcatt gcgccgcaga
     4261 caactcagtc ttgttctggc gggaaaacta aaagctcatg atgccactga attaaaagct
     4321 atttttgaac aataattatg ctcaattatg ctccatgatc ttcaacaaag ctatggcggg
     4381 ctttttgaaa aggccctgat tgaagaaatc aaccaagtcg gcacttttag agaggtcccc
     4441 gaaggttttt tactgatcga tttcgggcaa tacaacaggt ctatgccttt gttgatgtct
     4501 ggggcgataa aagtatctag ggaggatcct cacggcaatg aattgttgct ttattttctg
     4561 gaagaaggag atacctgtgc catgactttg aactgttgtt taggacaaac ccaaagtgaa
     4621 attcgcgcgg tggcagagcg ggacaccaaa ctgattatgg ttcctattca aaaaatggaa
     4681 gaatggaccg gaaaataccg ttcgtggaga aacttcgttt tcgaaagtta ccacaatcgt
     4741 ttaatggaga tgctcgaaag tattgattca attgcctttt taaggatgga tgagcgctta
     4801 atcaaatgcc taaaagaaaa agtcgcggtc aatcatagcg ccattcttca caccacccat
     4861 aaagagattg ctcacgactt gcatacttct cgggtcgtaa tttctcgctt gctaaaaact
     4921 ttggaaaata acggggcgat taaactccat cgaaacaata tcgaagtact cgaaacggat
     4981 caaaattaat tccgtgtaac ttgggctacc taaccatcca aacagagccc gtatctttgc
     5041 ccacacacaa aaaagcttat ggaaattcat ttgattctag gatacttcgg cgcaatactt
     5101 atcggtgttg tccttgggct tatcggcggt ggcggttcaa tattgacgct ccctgtactg
     5161 gtttatttat tcggtattga gcccgtaatt gcaacagcat actcgctttt tattgtaggt
     5221 gtcgctgcag ttgccgggac gctaaaaaac atgagtcaga agttagtcga ttttaaaacc
     5281 gcattaattt ttgcgctacc tgcgtttatt gcggtttacc ttacccgaag gtatctcgtt
     5341 ccctctttgc ctgatctatt attatccctt ggtgatttca gtctttctaa agatgttggg
     5401 attatggtgt ttttcgcaat aatcatggtc cttgcttctg tctctatgat tcgagaccga
     5461 cgtaaagaag ccgatgctga ttccgaaaaa accgaaccta aatacaacta ccccctaatt
     5521 gtattagaag ggtttgtcgt tggggtgctt accggtattg tcggtgctgg tggtgggttt
     5581 ttaataatcc ccgcattagt gctactggcc aaattgccaa tgaaaaaagc ggtggcgacc
     5641 tcattattaa ttattgccat caaatannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnattaa ttattgccat caaatcactt
     5821 attgggttta tcggcgacat tcaggtcatt gaaattgatt ggatcttttt attgattttt
     5881 gccctgctct ctgtcgttgg tatatttata ggcgtgcgct taaatcaaat tgtgccaggc
     5941 caaaaattaa aaaa
//
LOCUS       DPUP01000099           11691 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8589,
            whole genome shotgun sequence.
ACCESSION   DPUP01000099 DPUP01000000
VERSION     DPUP01000099.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 11691)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 11691)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11691
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(148..1692)
                     /locus_tag="DHV98_03350"
                     /pseudo
     CDS             complement(148..1692)
                     /locus_tag="DHV98_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187898.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    1391..1435
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1707..2765)
                     /locus_tag="DHV98_03355"
     CDS             complement(1707..2765)
                     /locus_tag="DHV98_03355"
                     /inference="COORDINATES: protein motif:HMM:PF05096.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine cyclotransferase"
                     /protein_id="HCK05409.1"
                     /translation="MTPLRQLLSLLILTIFLVQCGTSPKGDSAFFEILIKADQKTYTP
                     LDTLHLAVLTKLTLKADSIQWSAQSHSMGTVQVEGETLSLNDWPMGNHKLQALVYTTE
                     GPKKISKEFTVVAAQKPELYTYTILERFAHDINAYTQGLEFDGDDLYESTGQYGQSSL
                     RKLDLIQGKVLRNEPLDHSFFAEGLTVFDNKIIQLTWRENTGLVYNKETLELIDQFQY
                     DKSLQGWGLCNDGTLLYKSDGTQKIWRIDPKTYKELGYIEVYTDKLKIDQINELEWVD
                     GKIYANIYQKDAIAIVDPQSGAVEGVINLKGLQKEVTQHQKLDVLNGIAYNGIPGELF
                     ITGKNWDQIFKLKVDKKQ"
     assembly_gap    2842..2883
                     /estimated_length=42
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3004..>3749
                     /locus_tag="DHV98_03360"
     CDS             3004..>3749
                     /locus_tag="DHV98_03360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017497639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase/reductase"
                     /protein_id="HCK05410.1"
                     /translation="MAQVVLVTGASSGIGRAIALTLHQNNFKVYGTSRNPERYLDLPF
                     KMLALDLHNPQGFKRTLESILQIDGRIDVLINNAGAGITGPLEETPLAESRKAFETNF
                     FGPMELINQVLPIMRGQKSGCIINISSIAGYMGLPFRGIYSATKSALEIITEAYRIEL
                     APFNVRICSIAPGDFATNIAAGRYHAPVIAGSPYAETYGQTLTLIDDHVTLAPSPEPM
                     AQKVLEVIKQNHPRPHYAVGTWLQKFSLVL"
     assembly_gap    3750..3921
                     /estimated_length=172
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4134..4787
                     /gene="fsa"
                     /locus_tag="DHV98_03365"
     CDS             4134..4787
                     /gene="fsa"
                     /locus_tag="DHV98_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013307258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HCK05411.1"
                     /translation="MKFFIDTANLDQIKEAQNLGVLDGVTTNPSLMAKEGITGREAIL
                     KHYVAICEIVTGDVSAEVIATDFEGMVKEGEELAALHPQIVVKVPMIKEGVKAIKYFS
                     DKGIRTNCTLVFSAGQALLAAKAGATYVSPFIGRLDDISTDGLTLIEEIRLIYDNYGF
                     GTQILAASVRHTMHVLACAKIGADVMTGPLSSIEGLLNHPLTDIGLAKFLADYKKGN"
     gene            complement(4805..6208)
                     /locus_tag="DHV98_03370"
     CDS             complement(4805..6208)
                     /locus_tag="DHV98_03370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05412.1"
                     /translation="MRFSLYVLLSLIVVSCQSKSDPEACGSAWIGGQIVNPKTDYVVI
                     SHNRNASDTVFLDERNFFLYHIKAADPGLYYFQHFEFQALFVEPGDSIMLRVNTLEFD
                     ESLTYTGPGSSKNNFLTELFLLNEKADQEILSFYSLAPEAFVEKMDSIRLQRQTFLSE
                     FIETKRTSEAFLSVANAAIDYAIFGKMELYIASNNKRLRYGEEMAIPATFYDYRRKMD
                     LGNEDLRTYYPYFRCLGYYFDNLAFEAIEGEKEFSRMSFEHNWHKMDLIESKITNDSL
                     KQSLLKNTVINYFIHAENTEHMALILDKFNGYNQSSEDKRLISELSEIALRLMPNKPL
                     PDVTLVSFDNRTVSIQEIIKRPTVIYFWSLNSPIHVKNIHKRISELRGKYPEFDFIGV
                     NVDDQFKKWQRLVQHESYRTEHEFQFEDFEKAGMALLINSVNKTMMIDAKGIIIDPHT
                     NIFSLDAEQKLLNYLNR"
     gene            6352..8006
                     /locus_tag="DHV98_03375"
                     /pseudo
     CDS             6352..8006
                     /locus_tag="DHV98_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014164575.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
     assembly_gap    7076..7116
                     /estimated_length=41
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(8031..8237)
                     /locus_tag="DHV98_03380"
     CDS             complement(8031..8237)
                     /locus_tag="DHV98_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05413.1"
                     /translation="MKRIFTGPSLVAGAITAELNDMGISPVVRNDTQSGAIAGFGGGV
                     LDQVQLLVREDQYEQAFEVAQKFD"
     gene            complement(8314..10798)
                     /locus_tag="DHV98_03385"
                     /pseudo
     CDS             complement(8314..10798)
                     /locus_tag="DHV98_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783186.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
     assembly_gap    10328..10373
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(10865..>11691)
                     /locus_tag="DHV98_03390"
     CDS             complement(10865..>11691)
                     /locus_tag="DHV98_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCK05414.1"
                     /translation="TPIPRTLAMSLYGDLDISVIDTLPPGRKPIKTVHRFDSNRLKVF
                     GFIRQEIALGRQVYIVYPLIQESQAMDYKDLMDGYESIVREFPAPKYQVSIVHGQMKS
                     ADKDFEMQRFASGQTQIMVATTVIEVGVNVPNASVMVIESAERFGLSQLHQLRGRVGR
                     GADQSYCILMSGQKLSDDARHRLETMVATNDGFEISEADLRLRGPGDLMGTQQSGVLQ
                     LKIADLIKDGETLKIARSYAQELLRQDPDLNREEHLGVRNTLAAIFKYKNLWHHIS"
BASE COUNT         3156 a         2454 c         2463 g         3272 t
ORIGIN      
        1 ccaaggttta cgccatgacg aacgttgaca atatggcgtc tcagggttta ttgaaaaaaa
       61 tgaattttag cagaacgggg gattatcaac cgctcaatca agagggccag gtagatttag
      121 atgcagcccc gatgggcctg tatacgctta attttcagga aaactaatgg cttggtaggc
      181 gccgaggtcg gcgttggatg caggtcttag gcttccattt aaatcgacag gtaccgcaac
      241 ggctccagca ctcgatccgc ggcctacggc cgctgactcc tctaatgaga tatcaaagtc
      301 attgaggttg atgttctcaa atactggatc ctcattcaat accaagtttc gataaagcgt
      361 cggattagcg aaatcataca agggttcatc cgcataggtg ttcagtggat cttgaaactt
      421 gatcaaacaa tggtcaaaaa gcacgttaaa cgcccccaaa tcttctttat aaagtccgat
      481 ttcgcgctgt tcggtgccgt atatgataca attaacaaac tccgcctgtt ctaaatcggc
      541 gactaaaatt tcttgatcat taatggccaa agcatttgtg acttgcacgg atggaaagct
      601 tctaaagcta ttggaccaat aatttgaaaa cgtactgtgg ataaatttgt agcgtcctcc
      661 taacgtcagg gccaaagccg cttgaccaga gttgctgatc acaacatttt ctccgtagac
      721 atcgccagtt tgtgccaaaa ggccagaggt cgcggtattg tatatttgga cattttttaa
      781 ggtcaacgtc cgatctccgt cgttgctatc cattaaaatt cccaccaaat tgtttttaac
      841 ggtgacataa gaaaattcgt gattcgtgct gcctgcagtg agccaaatcg taccccactg
      901 accgggaata tcagaaaagc ctggctctaa gcgatcgctt tcaaatatga tttgaccttc
      961 cagggcctcg ggatcgttac tgggaagacc gatggccttt agagcggcac cattggcggc
     1021 aatgatgccg ctattttcat gaaaatgaac acgagcccct ggttcaatat tcagtgtctt
     1081 tccggcagga atggcagcat acccatagat aacccatggt ttgtctgcgg tccacgtcag
     1141 ctcgttatcg tcgaggaaaa agccatcaat aaacacatct tcgcccagat ctaaggtctc
     1201 ataaatacca tcccccaaag gttctggaaa taaaaaatgg gcttgttgga cgagcgtaac
     1261 aagggtaaca ttttgggcat tattgcctga gtcaaaaacc aatttatctt catagaccat
     1321 ttgggcattt tcccctagat tacccactgt agtctcaatg aatacaaata tgctatccct
     1381 ggccagaatt nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnccatc
     1441 aacatttaac cgatagtttg aggcggtccc ttgtgctaag gcgacttgtg gaatagtgac
     1501 attcttatca ctgtcattgt agacttttag ggtataggtg ctggagccaa tattttcaaa
     1561 aatagtatct aaaaagatcg tatcgtttga aaaacgcaaa gcccctgtac tgggtactga
     1621 atcaaattcc gtttgacatg aactccaaaa aataacaagg ctcagcgtga ctagggggta
     1681 aagagatttt atggctgcgg taattttcat tgcttcttgt ccacttttag cttaaaaatt
     1741 tgatcccaat tttttccggt aatgaataac tctccaggga tgccattata ggcaatcccg
     1801 ttaagcacat cgagtttttg gtgctgggtc acttcttttt gtaagccctt aagattgata
     1861 acgccctcta cggctccaga ttgtggatcg acgatggcta tggcgtcttt ttgataaata
     1921 ttggcgtaaa tttttccatc aacccattcg agttcattga tttgatcaat ctttaattta
     1981 tctgtgtaaa cttcgatata gccaagttcc ttataagttt tgggatctat tcgccaaatc
     2041 ttttgcgtcc catcgctttt gtaaagcagg gtgccatcat tacacaatcc ccagccttga
     2101 agacttttgt cgtattgaaa ctgatcaata agttccaagg tttctttatt gtagactaac
     2161 cctgtatttt cacgccaggt caattgaata atcttattgt caaaaaccgt aagtccttca
     2221 gcaaaaaaag aatggtccaa aggctcatta cgcaatactt ttccttgtat caaatctaat
     2281 tttctcagac tggattgacc gtactgaccg gtgctttcat ataaatcatc cccatcaaac
     2341 tcaaggcctt gagtataagc attgatatcg tgagcaaagc gctccagtat ggtgtacgta
     2401 taaagttctg gtttttgtgc cgccactacc gtgaattcct tgcttatttt tttgggccct
     2461 tctgtggtat acaccagggc ttgtagttta tgattaccca taggccaatc attgagtgag
     2521 agtgtttctc cctccacctg aacggtcccc atactgtggc tttgagccga ccattgaatt
     2581 gaatcggcct taagggttaa tttggtcaaa acggccaaat gcaatgtatc taaaggggta
     2641 taagtttttt ggtctgcttt gatcaaaatt tcaaaaaacg cactatctcc tttgggcgag
     2701 gtgccgcatt gaacgagaaa tatcgttaag attaaaaggc taagtaattg acgcaaaggt
     2761 gtcatctggc tttaaaattt tagcgccaag ataaccataa taattgatgt tgaaaatgtt
     2821 tgtaaggccc taaaaagcaa tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnaatcccc cagggtggga acgcagcaag ggtagatggt cgcagcggtg tgatgtatgg
     2941 tacttgccat ttttttttgg attccactca acattacgtc atctttgtgt taaacttcta
     3001 tttatggccc aagttgtttt agttacaggt gcttcttcag ggataggtcg tgccattgcg
     3061 ctaacacttc atcaaaataa ctttaaagtt tacggtacaa gtcgaaatcc tgagcgttac
     3121 ttggatttgc cctttaagat gttggcttta gatttgcaca atcctcaagg ttttaagcga
     3181 acccttgagt ctatcctcca aattgatggc cgaattgatg tccttattaa taatgcaggg
     3241 gcgggaatta cagggccgct cgaagaaacc ccactggccg agagtagaaa ggcttttgag
     3301 actaattttt ttggtcccat ggagctcatt aatcaggtat tgcccatcat gcgtggtcaa
     3361 aaatcaggat gtatcataaa tatatcctcg atagccgggt atatgggcct cccttttcgc
     3421 ggtatttact cagcgacaaa atcagccctt gaaattatca ctgaggccta ccgcatcgaa
     3481 ttagcgccat ttaatgttcg aatctgttct attgccccag gtgatttcgc tacaaatatt
     3541 gcggcaggac gctatcatgc ccctgtgatt gcggggtcgc cttatgcgga aacctatggg
     3601 cagactttga ccttaatcga tgatcatgtg acgcttgcgc caagccctga acctatggcg
     3661 caaaaggtac ttgaggtcat taaacagaac catcctcgcc ctcattatgc tgtaggaacc
     3721 tggttgcaga aattttcatt ggtactcaan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nagaaatttt cattggtact caaacgatta cttccgcaaa
     3961 aagtatacga acgcatgctc cgtaatcact ataaacttta ggttcaatat gtgaacaact
     4021 cgtggagaaa cttttcgtca atcccagcga gtgattcaaa acttaaatta tttttaaacc
     4081 aaataaacag ccaataaata attccctcgc tcaaccctct aattaaaaac tttatgaaat
     4141 tttttatcga taccgctaac ttagatcaaa ttaaagaagc gcaaaattta ggcgttctgg
     4201 atggcgtaac cacgaatccg tcccttatgg ccaaagaagg cataaccggt cgtgaagcca
     4261 tcttaaaaca ctatgtcgct atttgcgaaa ttgttactgg agacgtttct gcagaggtca
     4321 ttgctacgga ctttgagggt atggtaaaag aaggagaaga gctcgctgca cttcatcctc
     4381 aaattgtcgt caaagttcct atgattaaag agggcgtgaa ggcgataaaa tatttctctg
     4441 ataaggggat ccgaaccaat tgcaccttgg ttttttctgc tggtcaagcc ctcttagcgg
     4501 ccaaagcagg agccacatat gtttctcctt ttattggtcg tcttgatgat atctctactg
     4561 atggacttac cttaatcgag gagattagac tcatctatga caactacggc tttggcaccc
     4621 aaattcttgc cgcctcggtg cgtcacacca tgcatgtgtt ggcttgtgct aaaattggcg
     4681 cagatgtaat gactggccca ctttcttcga ttgaaggctt acttaaccat ccattaaccg
     4741 atattggatt ggctaaattt ttagcagatt ataaaaaagg aaactaagca tggcttatgc
     4801 ttaattatcg attgaggtaa ttgagtaatt tttgctcagc gtctaagcta aagatattgg
     4861 tgtgcgggtc aataatgatt cctttagcat caatcatcat ggttttgttg actgaattaa
     4921 tgagcagagc catacccgct ttttcgaagt cttcaaattg aaattcatgt tctgtgcgat
     4981 agctttcgtg ctgaaccaat ctttgccatt ttttaaattg atcatcgaca ttgacgccga
     5041 taaaatcaaa ctccgggtat ttgcctctga gctcactaat acgcttatgg atatttttga
     5101 catggatcgg tgaatttaaa gaccagaaat aaatcaccgt aggtcgttta atgatttctt
     5161 gaattgatac cgtacgattg tcaaacgaca ccagcgttac atcgggcagg ggcttgtttg
     5221 gcatcagtct cagggctatt tcagaaagtt cagagatcag ccgcttgtcc tcactgcttt
     5281 ggttatatcc attgaattta tccagaataa gggccatatg ctccgtattc tcggcgtgaa
     5341 taaaatagtt aatcaccgtg tttttgagca aactctgttt caaagaatca ttggtaatct
     5401 tagactcaat caggtccatc ttatgccaat tgtgctcaaa ggacatacgg ctaaactctt
     5461 tttctccctc aatggcctca aaggcaagat tgtcaaaata atagcccagg cacctgaaat
     5521 aaggataata agttcttagg tcttcattac cgagatccat tttccttctg taatcataaa
     5581 atgtagccgg tatagccatt tcttctccat aacgcagtcg cttattgttc gaggcaatat
     5641 agagttccat ttttccaaaa atagcatagt caatagcggc attggctacg cttaagaaag
     5701 cctcagaggt ccgtttagtc tctataaact cgcttaaaaa ggtctgcctt tgcaaacgaa
     5761 tggaatccat tttttcaacg aacgcctctg gcgctagact ataaaaagaa aggatttctt
     5821 gatcagcctt ttcattaagc aagaatagct cggtgaggaa attgttttta gaagatccag
     5881 gcccagtata ggtcaaagat tcatcaaatt ccaaagtatt cacacgcagc atgatgctgt
     5941 cgcccggctc gacaaacaag gcttggaatt caaaatgttg aaagtaatac agcccgggat
     6001 ccgctgcttt tatatgatac aaaaagaaat tgcgctcatc taaaaatacg gtatcactgg
     6061 cgttgcgatt atgagagata acgacataat cggtcttggg attcacaatt tgccccccga
     6121 tccaagcact gccacaggct tctgggtcag atttggattg gcaggagaca acaataagac
     6181 tcaataaaac ataaagacta aagcgcacgg ttcctatcag ttgttgttcc ttacaaaaat
     6241 agttttctca accaagtcat ttgttaatgc ctcgttaaag tattattcag tggtcttgaa
     6301 taggtttgtt cagaaaatgg ctatttttgc gcccagtaaa acaaaacagc aatgctatca
     6361 gtttcaaatt tatcggtaca attcggcaaa cgcgtccttt ttgacgaagt taacacgcaa
     6421 ttcgtccaag gcaattgtta tggaatcatt ggggctaacg gagcaggaaa atccaccttt
     6481 ttaaagatac tttctggaaa gcaagatcca acgtcagggc gggtgcactt ggaacctggt
     6541 aaacgcatga gcgtactcga gcaagatcac aacgcttgtg attcatttac tgttttggaa
     6601 actgtggtgc gtggtaataa agatctattt gccttaaaaa ctgaaatgga tgccctttat
     6661 gcggactata gtgatgaaaa cgcggaacgc ataggagagc ttcaagtggc ttttgaggag
     6721 atgaatggat ggaacgccga tagtgatgca gcggccttat tatccaattt ggggataaaa
     6781 gaagattttc actatacctt gatgtctgat ttagacggta aacaaaaagt tcgtgtgctt
     6841 ttagcacaag ctctttttgg cagtcctgat gttttgatca tggatgagcc caccaacgat
     6901 ttggattatg aaaccatttc ttggcttgaa caatttttag ccaattacga caattgtgtt
     6961 attgtggttt cccacgaccg tcacttttta gatgcggtct gcacacacat tagcgacatt
     7021 gattttggaa aaataaatca ctttagcgga aactacacct tctggtacga aagcannnnn
     7081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncaag acagcgtgca cagcagaata
     7141 aaaaggccga agaaaagaaa aaagagcttc aggaattcat catgcgcttt agtgcgaacg
     7201 tggccaagag taagcaagcg acttcgcgaa aaaagatgct agaaaagctt aatgtggatg
     7261 aaattaagcc ttctagcaga cgctatcctg ccattatttt cgaccgagaa cgcgaagctg
     7321 gggatcaaat cttgaacgta gagaatcttt ctgcacattt ggacggtgag gttttgttta
     7381 aaaatataga cctgaacctg gcaaaagggg ataaagttgt gctgtattct aaggactctc
     7441 gtgcaacaac agccttttat caaatcatta atgaccaaat aaaagccgaa tcgggaacat
     7501 tctcgtgggg ggtcacgaca aaccaaagtt atttgccttt agataacagt caatttttta
     7561 accgagacga gaatcttgtc gactggctaa gacaatgggc taaaacagaa gaagaaaaag
     7621 aagaggtgta ccttcgcgga tttttaggaa aaatgctttt tagtggggaa gaggccttga
     7681 aaaagtgtac ggtgctctct ggtggagaaa aagtacgctg tatgctcagc cgtatgatga
     7741 tgatgcgtgc caatgttgtg atgctagacg agccaacaaa ccacttagat ttggagtcca
     7801 ttacggcctt taacaactcc ttgaaaaatt ttaaagggac ggtcctcttg acgacccacg
     7861 atcatgaatt tgcacaaacg gtcggaaatc gcgtagttga attaacccca aaaggggtaa
     7921 ttgatcgtta tacgagtttt gatgagtata tgagtgatgc caaaatcaag gaactccgtc
     7981 aatccatgta tggcaccgcg gtttaagtca atgccaaaaa tcagcgcgaa ttaatcgaat
     8041 ttttgagcga cttcaaatgc ttgctcatac tgatcctcac gcacgagtaa ctgcacctga
     8101 tccaaaacgc cgccgccaaa gccggcgatc gccccgcttt gggtgtcatt gcgcaccaca
     8161 gggcttattc ccatgtcgtt tagttcggcg gtaatggctc cagcaacgag tgacgggccg
     8221 gtaaatattc ttttcatgct cataatttaa tcggaattat tacgccgcga tcgcgtaaat
     8281 caagtttggc taaaggcaat gaactaaaaa agtttaacgc aaaactgctt caaaatcacg
     8341 cgcaaaagtt tcttgcaatt tcctcatgat tttatcaatt tgtttatccg ttaaggtctt
     8401 atgctcgtct tgaagcgtaa atgaaagggc ataactcttt ttaccctcag gaatgttttt
     8461 tcctgtgtaa acatcaaaaa gcgttacctc tcgaagcaat tgtttctcag cattcaaagc
     8521 ggcacttttt agctgatcaa agctgatgtg ctgatccaac aataacgcta agtcccgctt
     8581 gacttttggg aatttagcaa tcggagcaac tttaatgctc tggggtgaaa tcattgattt
     8641 tatggcagcc caattgaatt cagcatagag aacgggaagt tcaacatcaa atgcgttaca
     8701 caaattttgt tgaagtaccc cgtaatgaac taaggctttt gagccattgt aggccgtgag
     8761 cccctcttgc cagagcgctt gtgcgcaact ttcttctgaa gtgactaaaa tccctaaact
     8821 ctgcaacaat tgatgtacag aacttttgag ctcaaaaaaa ctgatgtttt cagcgttcga
     8881 ttgccagtgc ccttcgttag tcttgcctgc cagtcctaag gccaaacagt cgaactcttc
     8941 ataggccccc ccattgtgtc gatacgtttt gccaaattca aaaacgcgaa gcccactcac
     9001 tttgcgattt agattaaatc cgatggattg taagacccca aaaaccatag actgtcgcat
     9061 cacgccaagg tcttgactca atgggttgag taaggccacg tcttgatcgg gatttaaatc
     9121 agcaatgagc ccagaatttt gttttgccgt tagggaattg tttaaaattt caaaatagcc
     9181 ttgactggtg agttgttggg ccagtctgtt ttgcaactga aagtcctcac gatgccccaa
     9241 tgtggcgacc gaagcgttaa gcttagcgct gaaattaatg ttgttatagc cataaacccg
     9301 cagtatttct tcaatgacgt cggcctcgcg ggtcacgtca ttgcgataag cgggaatagt
     9361 catcccgagg ccggtctcgg tgatattatt gatttttatg tccaaagagg tcaaaaccga
     9421 cttaatggtt tcttttggga gcgcttgacc gataacctta gcagcagttt cgaaattcaa
     9481 aaacacctga tggtccgcaa ttttctttgg atagatatct gcaatgtcgc ttgaaatatg
     9541 gccgccggcg agttcattga tcataatggc agcgcgcttc aaggcgtact ccaccgtatt
     9601 gggatcgatg cctcgctcaa agcgaaatga agcatcggtg ttgagtccat ggcgctttgc
     9661 tgttttacgg acgctaaccg gatcaaaata ggcgctctct agaaagatcg aagtcgtttc
     9721 gtcggtgact ccggactcca atccaccaaa tacaccggca atacacatag gctggtccgc
     9781 attacaaatc attagatcct ctgcgtgtaa ttttcgaatc accccatcga gtgtggtaaa
     9841 ttcagtgtct tgggctaccg tttttacaat gaccttgttg ccagcgattt tagcggcatc
     9901 aaaagcgtgg agcggttgtc cgagttcgtg caggatgtaa ttcgtgacat cgactacatt
     9961 gttgatcggt ttgacaccaa tggcgctcaa acgatgtttc agccagtccg gtgaaggacc
    10021 aacttttatc tcgctgagcg tgactccagc gtaacgtgga gcgcgctttt gatcgtcaac
    10081 cttaacttca atttttagtg aacgtttgtc tatgtgaaaa ctgctggtcg agggggtaat
    10141 aagctcaaga gcaattcctt gttgcactaa tcccgctttt aaatccctgg ccacacccca
    10201 atgactcatg gcgtccgatc tgtttggggt taatccaatt tcaaaaagct ggtctttggt
    10261 tacgggaatg agttctgata atggcgttcc cggctttgga ctgccctcca agaccataat
    10321 tccgtcgnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnataattc
    10381 cgtcgtggtt atcgcccagg ccgagttcat cttcggcgca gatcatgcct tcactggctt
    10441 ctccgcgaat tttacttttt ttaatggtcc aagggctacc gtctgctgcg taaagtgtgg
    10501 tccccacagg ggccactgcg acatactgac cctcagcaac attaggggcg ccgcaaacaa
    10561 tagcgctcgg ctgttcttga ccaatatcga ctgtggtgca tctgagccga tcagcatttg
    10621 ggtgctggat acaggtcaat acttttccca ccacgattcc ctctaaatcg ccgggtacag
    10681 agctataatg ttcaatgcct tcgacttcta ggcctaaatc tgtcaacaat tccgccgttt
    10741 ggtctgcgga ccaatccagg cgtaaaaatt gttttatcca attgtatgat atggtcatgt
    10801 tctttgggtt aaagcaacaa agataggatt atgcttgttt ttgttaaagc caataaggtg
    10861 taaattatga gatatgatgc caaaggttct tgtacttaaa aatggccgct aaggtgttgc
    10921 gcacccccaa atgctcttct cgattgaggt cagggtcttg gcggagcagt tcctgggcat
    10981 aggagcgggc aattttaagg gtttctccgt ctttgattag atcggctatt ttgagctgga
    11041 gtaccccgct ttgttgcgtt cccatgagat ctcctggtcc acggagacgc aagtcggcct
    11101 ctgaaatttc aaatccatca ttggttgcga ccatggtttc tagacgatgc cgtgcatcat
    11161 ccgacaactt ttggccagac attaaaatac aataactctg atctgcaccc cgacccacac
    11221 ggccgcgcag ttggtgtaat tgactcaggc caaatcgttc ggcgctttcg ataaccataa
    11281 cactagcatt gggcacgtta acgcccactt cgatgaccgt tgtggccacc atgatttggg
    11341 tttgcccaga ggcaaaccgc tgcatttcaa agtccttgtc tgctgatttc atctggccat
    11401 gaacgattga gacctgatat tttggcgcag gaaattctct aacgatactt tcatagccgt
    11461 ccataaggtc tttgtaatcc attgcttgag actcttgaat tagggggtaa acaatgtaaa
    11521 cctgtctgcc taaggcaatt tcttggcgga taaagccgaa aaccttaagg cggttactgt
    11581 caaatcgatg gactgtttta atcggttttc gccctggggg aagcgtatcg ataacactga
    11641 tgtctagatc cccgtagaga ctcatggcga gggttcgagg aataggggtc g
//
LOCUS       DPUP01000100            4316 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15800,
            whole genome shotgun sequence.
ACCESSION   DPUP01000100 DPUP01000000
VERSION     DPUP01000100.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4316)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4316)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4316
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(36..1577)
                     /locus_tag="DHV98_03395"
     CDS             complement(36..1577)
                     /locus_tag="DHV98_03395"
                     /inference="COORDINATES: protein motif:HMM:PF07676.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05415.1"
                     /translation="MKTVIPTKSQYIKTLLVLIFFSLSTGTWAQKNKLRKAEKQSDNL
                     AYIDARDIYLKVVEKGYTSAQVYENLGDTYYWNSDYVNAAKWYDSLIDQFPDQVNAAV
                     LYRAAQSNKSSGNLQRANELLSRFNDMDGAGSYLGSSKVAILPFEVTLKEDSGFNSTY
                     SDFGPAFFGQSVVFSSTRPTGDDVQLHNWTNQPFSKLYQTDIDQQGNVIAVNQLRGAF
                     EPTGYQSTATFTADGKVMYFTQSQSLSKDQAKTDPTMRLKLVRAQLMENGEWGNFRDL
                     PLNDNTYSSAHPALSSDETKLYFASDRPGGFGGSDLWYAVILGDSISAEPVNLGSKIN
                     TAGRETFPFVDANNTLYFASDSYAGMGGLDIYSIDLSDERAKLAHLSEPVNSSMDDFG
                     LIYNLENQEGYFTSNRGGADSQGDEIYGFKAVCKILLSGNVYDQETNEKIPGAYVQVF
                     DLDNSVAQEFVLGSDAIFAFEHKCDQDLRIVATAPGYEPNEVIVHTPSISAEQNVSID
                     RKSVV"
     gene            1696..3285
                     /locus_tag="DHV98_03400"
     CDS             1696..3285
                     /locus_tag="DHV98_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007137821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HCK05416.1"
                     /translation="MSLQREIKRRKTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVK
                     NNKIKKSATSDFMEIERQRGISVATSVLAFEYKGLKINILDTPGHKDFAEDTFRTLTA
                     VDSVIVVIDVAKGVEEQTEKLVEVCRMRRIPIIVFINKLDREGKDAFDLLDEIEQKLQ
                     LSVTPLSFPIGMGYDFKGIYNIWEKNVNLFSGDSRKNIEETIKIEDIDNPQLDNLVGA
                     NSAAALRDNLELVREVYPDFDQKAYLESHLHPVFFGSALNNFGVRELLDAFITVAPEP
                     KPKESSTRIVNPDESKFSGFVFKIHANMDPKHRDRLAFVKIVSGTFERNTPYWHVRSG
                     KKMKFSSPNAFFAEKKEIVDISYPGDIVGLHDTGSFKIGDTLTEGEVMEYKGIPSFSP
                     EHFKYINNADPMKSKQLEKGIDQLMDEGVAQLFTLDLNGRKVIGTVGALQFEVIQYRL
                     EHEYGAKCSYEPLNVHKACWVAPSDAKNTEYADFMRVKSKFLARDKSGQQVFFADSAF
                     TLQMTQQNYPSIKFHFVSEYN"
     gene            complement(3282..3596)
                     /locus_tag="DHV98_03405"
     CDS             complement(3282..3596)
                     /locus_tag="DHV98_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3467 domain-containing protein"
                     /protein_id="HCK05417.1"
                     /translation="MSDNKTPKPNQINIELDENIAQGIYSNLAIINHSQSEFVLDFVS
                     VMPGVPKSKVKSRIVLTPQHAKRLLKAIADNVQRFESMHGEIKDYQQSTMPINFGPTG
                     EA"
     assembly_gap    3616..3660
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3710..>4316)
                     /locus_tag="DHV98_03410"
     CDS             complement(3710..>4316)
                     /locus_tag="DHV98_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HCK05418.1"
                     /translation="YLVNEVQEVYRLQGVKINDKHFEVVVRQMMRKVQIVDPGDTLFL
                     EDQLVHKDDFIEENDKIFGMKVVENAGDSSTLKEGQIISSRELRDENSLLKREDKAIV
                     VARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAVSGKVDGLEGLKEN
                     VIVGHKIPAGTGMRDYDTIIVGSKEELEAMTREPQEEVNYN"
BASE COUNT         1281 a          923 c          814 g         1253 t
ORIGIN      
        1 atgatacggc gaccaccgag atctacactc tttccctaca cgacgctctt ccgatctatt
       61 gaaacattct gctcggctga gatacttggc gtgtgcacaa taacttcgtt aggctcatac
      121 cccggagcgg tggctacgat gcgcaagtct tgatcacact tatgttcaaa agcgaaaatt
      181 gcgtctgatc caagaacaaa ctcttgtgcc acagaattat ctaaatcaaa tacttgaaca
      241 tatgctccag gaattttttc gttcgtctct tgatcataga catttccgct gagtaaaatt
      301 ttacagaccg ctttgaagcc ataaatctca tcaccttgac tgtctgcacc ccctctattg
      361 gaggtaaaat atccctcctg attctcaaga ttataaatca aaccaaaatc atccattgaa
      421 ctattcactg gttccgagag gtgcgctaat ttggcgcgct catcgctcaa atcgatactg
      481 taaatgtcga gtccccccat tccagcatag ctgtctgatg caaaatacaa tgtattgttt
      541 gcatcaacaa aaggaaaagt ttcccgtcct gccgtattta ttttcgaacc cagatttact
      601 ggttcagcag atatactgtc tcccaaaatg acagcatacc ataaatctga acccccaaat
      661 cctccaggac gatcagaggc aaaataaagt tttgtttcat ctgaactcag ggcgggatga
      721 gccgaagaat aagtgttatc atttaatggc aaatccctga aattacccca ctctccattc
      781 tccatgagtt gcgcacgaac caacttcaaa cgcattgtag gatccgtttt ggcttgatcc
      841 ttactcaatg actggctctg agtaaaatac atgactttac cgtcagcggt aaaggtcgct
      901 gtagattggt agcccgtggg ttcaaatgct cctcttagct gattcacagc aataacatta
      961 ccctgctgat caatatccgt ttgatacaat tttgaaaagg gctgattggt ccagttgtgc
     1021 aattgaacat catcacctgt tggacgagtt gaactaaaaa ccaccgattg accaaaaaag
     1081 gcagggccaa aatctgaata ggtagaatta aatcctgaat cttcttttaa ggttacttca
     1141 aaaggcaata tagcaacttt agagcttccc aaataagacc cagcaccatc catatcattg
     1201 aatcgcgata aaagttcatt tgcgcgctgt aagttacccg atgacttgtt cgactgtgca
     1261 gcacgatata aaacagcagc atttacttgg tctggaaatt gatcgataag tgaatcatac
     1321 cacttagcag cattcacata atcactgttc cagtagtaag tatcccccag attttcataa
     1381 acctgtgcag aagtataacc tttctccaca acctttaaat aaatatctct agcatctatg
     1441 tatgctaaat tatctgattg tttttcagcc ttgcggagct tatttttttg agcccaagtt
     1501 ccagttgaaa ggctaaaaaa aataaggact aataaggttt ttatatattg acttttcgta
     1561 ggaataacgg ttttcataaa aacataaatt actgattaaa tgccacttac agattgcaat
     1621 agtgtaggaa ttattaaata ttattaaatc tgtctaaatc tcgtcctatg gttatctttg
     1681 tattaaattc taaacatgtc cttacaacga gagataaaga ggagaaaaac ttttggcatt
     1741 atttcccatc ctgatgcggg taaaaccact ttaactgaaa agctactcct tttcgggggt
     1801 gcgattcaag aagccggagc cgtcaaaaac aacaagataa aaaaaagtgc tacttcagat
     1861 ttcatggaaa tcgagcgtca acgcggaata tctgttgcta cctcagtttt ggcttttgaa
     1921 tataaaggct tgaaaataaa tattctggat actccaggac acaaggattt tgccgaggat
     1981 acttttcgta cccttaccgc agtagatagt gtcattgtgg ttattgatgt tgccaagggg
     2041 gttgaggaac aaacagagaa acttgttgaa gtctgccgga tgcggcgaat accaattatt
     2101 gtttttatca ataaattaga ccgtgaagga aaagatgcct ttgacctact cgatgaaata
     2161 gaacaaaaac tgcaactctc tgtaacgcct ttgtcctttc ccattggcat gggttatgac
     2221 ttcaaaggga tttataatat ctgggaaaaa aacgtcaatc tatttagtgg tgactctcgt
     2281 aaaaatatcg aagagacgat taaaattgaa gatattgaca atcctcagct cgataattta
     2341 gttggcgcta actcagccgc tgcacttcgc gataatttag aattagttcg agaagtttat
     2401 cccgatttcg accaaaaggc ctatttagaa agtcacctcc accctgtttt ctttggttcg
     2461 gcacttaata attttggcgt tagagaactt ctcgatgcct tcattaccgt tgctcctgaa
     2521 ccaaaaccca aagagagcag cacgagaata gttaatccag acgagagcaa gttctcagga
     2581 tttgtcttta aaatacacgc caacatggat cctaaacaca gagatcgcct tgcctttgtg
     2641 aaaattgtgt caggaacctt tgagcgcaac acaccctatt ggcacgttcg ttcgggaaag
     2701 aaaatgaaat tctcaagccc taatgctttt tttgccgaga agaaagaaat tgtggacatc
     2761 agttatcccg gcgacattgt tggattgcat gacacgggta gttttaaaat tggagatacc
     2821 ttgactgaag gagaagtaat ggaatataag ggcattccaa gtttttcacc agaacatttt
     2881 aagtatatca acaatgccga tcctatgaaa agcaagcaac ttgaaaaagg cattgatcag
     2941 cttatggacg aaggggtagc gcagctcttt actttagact taaatggacg aaaggtcatc
     3001 ggaaccgttg gtgccttgca atttgaagtc attcaatatc gtctggaaca tgaatatggg
     3061 gctaaatgta gctacgagcc actcaatgtt cacaaagcgt gttgggttgc accaagtgat
     3121 gccaaaaaca ctgaatacgc agattttatg cgagtcaagt caaaattctt ggctcgagat
     3181 aaatcgggcc aacaagtgtt ttttgctgat tctgccttta cactacaaat gactcagcaa
     3241 aattacccga gtattaaatt tcactttgtc agtgaatata attaagcctc gccagtagga
     3301 ccaaaattaa tgggcatggt cgattgctga taatctttta tttcaccgtg catagactca
     3361 aagcgctgca cattatcggc aatggctttt agcaagcgct tggcatgctg cggggtaaga
     3421 acgattcgag acttcacctt actctttggc accccgggca tcaccgaaac aaaatcaaga
     3481 acaaattcgg attgcgaatg attgatgatt gccaggttac tgtaaatacc ctgagctata
     3541 ttttcatcta actcaatatt aatttgattg ggctttggtg ttttgttgtc agacataatt
     3601 cttctggatg ttatgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 attacaaaaa acttgcgctc ctataatcag gagcgcaagt cattaaacct taattatagt
     3721 ttacctcctc ttgaggttca cgggtcatgg cttcaagctc ctcctttgaa cctacgatta
     3781 tcgtatcgta gtctcgcatt cctgttcctg ccggaatctt gtgaccgaca attacatttt
     3841 ccttgagtcc ttctaggcca tcgactttac cgcttaccgc agcctcgttg agtactttag
     3901 tggtttcctg gaaagaagcc gctgagataa acgatttagt ctgaagagat gctctggtta
     3961 tcccttgtaa gatcggtgtt gccgtcgctg ccaccgcatc gcgggcaaca actatggctt
     4021 tatcttcacg cttgagcaat gaattctcat cgcgcaattc gcgagaagaa attatctgcc
     4081 cctctttcaa agtacttgaa tcaccagcat tctcaacaac tttcattccg aaaatcttat
     4141 cattttcttc gataaagtca tctttatgaa ccaattgatc ttccaagaat aaagtgtccc
     4201 ctggatccac aatttggacc ttacgcatca tctgacgcac aacgacttca aagtgtttat
     4261 cattgatctt tactccttgt agacgataaa cttcttgtac ttcattcacc aaatac
//
LOCUS       DPUP01000101            3143 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2811,
            whole genome shotgun sequence.
ACCESSION   DPUP01000101 DPUP01000000
VERSION     DPUP01000101.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3143)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3143)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3143
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..324
                     /gene="petA"
                     /locus_tag="DHV98_03415"
     CDS             <1..324
                     /gene="petA"
                     /locus_tag="DHV98_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006997808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HCK05419.1"
                     /translation="LWRGKPVFIRKRTQEEIAEARAVKMEDLKHPERDEDRAKDPEWL
                     VMVGVCTHLGCVPLNDKGDYKGWFCPCHGSHYDTSGRIRKGPAPKNLEVPPYVFLSEN
                     RIKIG"
     gene            331..1572
                     /locus_tag="DHV98_03420"
     CDS             331..1572
                     /locus_tag="DHV98_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020166896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HCK05420.1"
                     /translation="MSSNDPHGYKKNLSSPYTGVKGWIDSRLPLIRMMEAEYLKFPVP
                     KSLNYFWSFGGIAMFCLIGLILSGIFLGMHYKPSAAEAFNSVERIMRDVQFGWLVRYL
                     HMNLASFFFIATYIHIFRALYFGSYKAPRELVFIFGMLMFLLMMGTAFLGYTLPWGQM
                     SYWGAQVIVNLFGSVPFIGPDLAIWIRGDYVVGDATLNRFFALHVIAVPIALLGLVVA
                     HIISLHEVGSNNPDGIEIKKHKDPKTGKPLDGIPFHPYYTVKDIFGLVVFMIIFASIV
                     FFAPEMGGYFLEHNNFIRADPMKTPPHIAPVWYFTPFYSILRAVPPMFGSQFPGVLAM
                     GGAVVILFLLPWLDKSPVRSIRYKGPLFKTSLTIFVTSFLLLGYLGLKPTNIWGQIGG
                     GDXXXYLSFLDLIEQRRSRIG"
     gene            1577..2296
                     /locus_tag="DHV98_03425"
     CDS             1577..2296
                     /locus_tag="DHV98_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008952458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HCK05421.1"
                     /translation="MKSTLIFLSFLSFVGLASAAGGGYSLDRANIDASDAESLQRGAK
                     IFIDRCVSCHSAAFMRFNRLTDIGLSERQIQQYFITDDTVKVGDTIKSAIRASDAKAM
                     FGVVPPDLSVVSRSRGADWLYTYLRTFYKDETATTGWNNLVFPNVAMPNVFSQEQGVL
                     RAIHSTSGQSGLTLQVETEGSLNTDAFDDLMLDLTNFLVFMGEPAAEKRKQIGSLVII
                     FLILFAFMAWAVKREFWKDIH"
     gene            2346..2990
                     /locus_tag="DHV98_03430"
                     /pseudo
     CDS             2346..2990
                     /locus_tag="DHV98_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007868077.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
     assembly_gap    2618..2716
                     /estimated_length=99
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2987..>3143
                     /locus_tag="DHV98_03435"
     CDS             2987..>3143
                     /locus_tag="DHV98_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011380349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HCK05422.1"
                     /translation="MKVLPSTSPYLIRAIYDWCCDTSQTPYLSVRVSESSSVPMEHAQ
                     DGEIVLNI"
BASE COUNT          788 a          574 c          737 g          936 t
ORIGIN      
        1 ttgtggagag gcaaacctgt tttcatcaga aaaagaactc aagaagaaat tgccgaagct
       61 agagctgtaa aaatggaaga tttaaaacat cctgaaagag acgaggatag agcaaaagat
      121 cctgagtggc ttgttatggt tggggtgtgc actcatttag gatgtgtgcc actaaatgat
      181 aagggtgatt ataaaggttg gttttgtcct tgccatggat ctcattatga tacttcaggg
      241 agaattagaa aaggcccagc cccaaaaaat ttagaagttc caccatatgt tttccttagt
      301 gagaatagaa taaagatagg atagtaaaaa atgagctcta acgatccaca cggttataaa
      361 aaaaatctta gttctccata cacaggagta aaggggtgga ttgattccag attgccccta
      421 ataagaatga tggaagcgga atacctaaag ttcccagttc ctaaatcttt gaattacttt
      481 tggtcttttg gtggaatagc tatgttttgt ttaataggtt taattttatc agggattttt
      541 cttggaatgc actataagcc ttcagcggca gaggcattta attccgtaga aagaattatg
      601 agagatgtcc agttcggttg gttagttaga tatctgcata tgaacttagc ttctttcttt
      661 tttatagcta cttacatcca tatatttaga gcactttatt ttggttctta taaggccccg
      721 agagaattag tttttatttt tggtatgttg atgtttcttt taatgatggg tacagccttt
      781 ttaggttaca cattaccttg ggggcaaatg tcttactggg gggctcaggt gatcgtcaac
      841 ttattcggat ccgttccttt tattgggcct gatctagcaa tttggatccg aggcgactac
      901 gttgttggcg atgcgacact taaccgtttc tttgcgctac acgtgatcgc ggtgcccatc
      961 gccttgctgg gactagtggt ggcgcacatt atctctctgc atgaggtggg ctccaacaat
     1021 cctgatggta ttgagataaa aaaacataaa gaccccaaaa caggtaagcc attggacggg
     1081 attccctttc atccctatta cacggtgaaa gatatctttg gtcttgtggt tttcatgatc
     1141 atatttgcgt ccattgtttt cttcgctcca gaaatgggtg ggtacttctt agagcacaac
     1201 aacttcattc gagctgatcc aatgaaaacg ccaccgcaca tcgcgcccgt ttggtatttc
     1261 acaccttttt actcgatttt gagagcggtt ccgccgatgt ttggttctca attccccggc
     1321 gtcttggcta tggggggcgc cgttgtcatt ttgttcttgt taccttggtt agataagagc
     1381 ccggtgcgct cgatcaggta taaaggaccg ttatttaaga catcgttgac gatttttgta
     1441 acatcattct tgttgctcgg atatttaggg ctgaagccta ctaacatttg gggacaaatc
     1501 ggaggtggtg atnnnnnnnn ntacctatca tttctcgact tgatcgaaca aaggcggagc
     1561 cggatcgggt gacctcatga agagtacatt aatttttttg agtttcttgt cgttcgttgg
     1621 attggcaagt gcagcaggtg gtggttatag cctggatagg gccaacattg acgcatcgga
     1681 tgcggaatcg ttgcaaagag gagcaaaaat atttattgac cggtgcgtga gttgccactc
     1741 ggctgctttt atgcgcttta accgacttac agacataggc ctctcggaga gacaaatcca
     1801 gcagtatttt attactgacg atacagttaa agtgggggat accataaaga gcgctattcg
     1861 tgcgtcagat gcaaaagcca tgtttggtgt ggtgccgcct gatttatctg tcgtttctcg
     1921 ttcaagagga gcagattggc tctacacgta tttgcgaact ttttataaag acgaaacagc
     1981 aactacgggt tggaataacc tagtctttcc taatgttgcc atgccaaatg tcttttcgca
     2041 ggagcaaggt gttttgcgtg cgattcactc tacgagtggt cagagcggct tgaccttaca
     2101 ggttgagacg gagggctcat taaataccga tgcgttcgac gacttaatgt tggacctaac
     2161 taatttttta gtatttatgg gagagccagc ggcggaaaag cgtaagcaaa ttggtagtct
     2221 tgtgattatc ttcctgattc tttttgcttt tatggcatgg gccgttaaga gagagttttg
     2281 gaaggacata cattaataaa gaaggtcaag gtaaaggctt tgattaaaaa aaggggacaa
     2341 taaacatgat gacgctctac tcgggcacga cttgcccttt tagccaccga tgcaggattg
     2401 ttttatacga aaaaggtatg gattttcaga ttgtagacgt tgatttgttc gataagccgg
     2461 aggatctggc tgtgatgaat ccttacaatc aaacacccgt tttggtagaa agagatcttg
     2521 tactttatga atcaaatatc attaatgagt acattgacga tcgctttcca catccgcaat
     2581 tgatgccggc tgatcctgct cttaaagcaa gagctcgnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnatct ggaacggcgc gtcaggctga gcaggcgaga gctcaggctc
     2761 gagatggctt gatacaaatt gctccagttt tcttgcgcca gaaatatata ttgggtgacg
     2821 aattttctat gcttgatgtg gctattgcgc ccctactttg gcggctggat ctttacggta
     2881 ttcagctgcc taaacaagca gctccactca tgaagtatgc tgagcggtta tttagccgtt
     2941 ctgctttcgt tgaggcatta acgccttcag aaaaggtgat gcgtaagtga aggtgttgcc
     3001 ctcaacttcg ccttatctta ttcgagctat atatgattgg tgttgtgata catctcaaac
     3061 gccgtatctt tcggttcggg tgtcggaatc atcgagtgtt cctatggagc acgctcagga
     3121 tggcgaaatt gttttgaaca ttg
//
LOCUS       DPUP01000102            3100 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23788,
            whole genome shotgun sequence.
ACCESSION   DPUP01000102 DPUP01000000
VERSION     DPUP01000102.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(151..1074)
                     /locus_tag="DHV98_03440"
     CDS             complement(151..1074)
                     /locus_tag="DHV98_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HCK05423.1"
                     /translation="MLNNNPQINQFSHLELKAKQIVEGYMSGLHKSPFHGYSAEFAEH
                     KMYHPGSATRFIDWKLYARTEKLYTKRFEEETNMRCHLVIDQSSSMYYPERGDVNGPE
                     LNKIGFSVLASAALMQLLKRQRDAVGLSVYDQTQTLNTQAKSSERHHQFILGKLEEIV
                     RSPNPIRKTDTAVQLSALARQLPRRSMVVVFSDLWMNQEQRAEIFEAMRHLKYRNHSV
                     ILMHTFDGVTEREFDFGSAPRKLKDLETGRELPVFPQQVQQAYKAKVKEYFEAIKLTC
                     AEHKIQYVAAEIQKGFKPIFTAFLVARQKYM"
     gene            complement(1156..1473)
                     /gene="trxA"
                     /locus_tag="DHV98_03445"
     CDS             complement(1156..1473)
                     /gene="trxA"
                     /locus_tag="DHV98_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HCK05424.1"
                     /translation="MALEITDASFEETVLKSDKPVMVDFWAAWCGPCRMVGPIIEDLS
                     AEYQGKAVVGKVDVDANQEFAAKYGVRNIPTVLVFKDGEVVGRQVGVAPKNVYAEALD
                     ALL"
     assembly_gap    1798..1844
                     /estimated_length=47
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1845..>3100)
                     /locus_tag="DHV98_03450"
     CDS             complement(<1845..>3100)
                     /locus_tag="DHV98_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HCK05425.1"
                     /translation="LAGFTKGEADVLRKAMGKKQKAVLDKMKPQFIKQAEAKNHPAEV
                     LEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVT
                     FFMEECRRMGREVLGPDVNESAYKFTVNDRGAIRFGMGAIKGVGSGAVDTIVTHRGAG
                     PYKSIFDLAKRIDLRAANKKAFENLILAGGFDSFDAHRAQYMFDEGDGICFYEKVLRY
                     AARYQESMNSAQVSLFGGASDVQIPEPEVPPCEPWGAMKKLKQEKEVVGIYISGHPLD
                     EFRVEMNEFTSIKVADCNNLEALVNKEIIFAGVVSSVEHREGRQGKGWGLFTLEDYDD
                     SFEFRIFGEEYLKFRHFLSVNAFLHIRAFVKEGWIQRDTGSQGAPRLQFNQFQLLHDV
                     LDNMTKRITFQAPIDELDQQYIDTLV"
BASE COUNT          849 a          739 c          561 g          904 t
ORIGIN      
        1 ctaaccaact gaactaccag accaaatttc aaatcttcct aagtagagac acgcaacagc
       61 gcgtattaca gaaattgttg cttattcaag cggtggcaaa tatacaccgc atttttattt
      121 tcacaaataa aatggtcaaa aataatacgg ctacatatac ttctggcgcg ccaccaaaaa
      181 tgccgtaaaa ataggcttaa aacccttttg tatctctgcc gcaacatatt ggattttatg
      241 ctcggcacag gtcagtttta tggcctcaaa atattccttt actttggctt tataagcctg
      301 ctgaacttgt tgaggaaaaa ccggtaattc acggcccgtc tcaagatctt ttaactttcg
      361 tggcgcagac ccaaagtcga attctcgctc agttactcca tcaaaagtat gcatcaatat
      421 aaccgaatga ttgcgatatt taaggtggcg catcgcctca aaaatctcgg cgcgttgctc
      481 ctgattcatc catagatcac taaaaacaac gaccatagat cggcgcggca attgccgcgc
      541 aagagcgcta agttgtactg cggtgtccgt tttccttatg gggttaggac ttcggacaat
      601 ttcctcaagt ttgccgagaa taaattgatg atgccgttca ctcgattttg cctgagtatt
      661 gagcgtctgt gtttggtcat agacgcttag acccacagca tcgcgctgac gcttgagcaa
      721 ttgcattaag gcggcactag ccaaaaccga aaagccaatt ttattcagtt caggcccatt
      781 tacatctccc cgctcaggat aatacatact gctgctttga tcaatcacca aatgacaccg
      841 catgttggtt tcttcctcaa acctcttggt gtacaacttt tcggttcgtg cataaagttt
      901 ccaatcaatg aagcgcgttg cgctgccagg atgatacatt ttatgctccg caaattcggc
      961 agagtatcca tgaaagggac tcttgtgcag tcccgacata tacccctcta cgatttgctt
     1021 cgccttgagt tctaaatgag aaaactgatt aatttgtggg ttgttgttaa gcatcgacac
     1081 aagataaaaa aagacctgtc acattcgaca ggtcttttaa aaaattctaa gggttttgag
     1141 cacccgaagg tattcttata acaaagcgtc taaagcttcc gcgtagacgt tttttggagc
     1201 aacgcctact tgacgaccta ccacttctcc atccttaaaa acaagaacgg taggaatgtt
     1261 gcgcacgcca tatttggcag caaattcttg gtttgcatcc acatcaactt tcccaactac
     1321 agcttttcct tggtactctg cactgagatc ttcaatgatt ggtccaacca ttctacaagg
     1381 cccgcaccat gctgcccaaa aatcaaccat tactggttta tcacttttta aaacggtctc
     1441 ttcaaaagac gcgtcggtta tttctaaagc cattgactat aagtattaga ttatcagaat
     1501 aatgttattg ctaatttgct ttgcaaagtt aatttttttg ctctatttat ttgatttagt
     1561 attatcagtt tactcgatta atgcattagg ctaaatgatg acttttaact taggttatat
     1621 gattgaccaa accattaatt gagcttgtaa tgcaaacgat tttcgttaag ttttttaatt
     1681 aattcgcggg ttatatcaat cttggcagtg cgactgggca tggttaagtg taaatttttg
     1741 gactgatcaa ataccgctaa atgaacactt tttttacctt taaatttttt cgtcaagnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncgacga gcgtatcaat
     1861 atattgctga tccaattcgt caatcggggc ctgaaaggtg atgcgctttg tcatgttgtc
     1921 caacacatca tgtaagagct gaaattgatt gaattgcagt cttggagcgc cttgacttcc
     1981 ggtgtcgcgc tgtatccatc cttctttgac aaacgcccgg atatgaagaa atgcgtttac
     2041 acttaaaaag tgtctaaatt ttaaatactc ttcaccaaaa atgcgaaatt caaaactatc
     2101 atcgtaatct tctagcgtga acagtcccca acccttaccc tgacgacctt cgcgatgctc
     2161 aaccgaactc actacccctg caaaaataat ttctttgttc accaaggcct caaggttatt
     2221 acaatccgcc accttgatac tggtaaattc attcatctcg accctaaatt catccaatgg
     2281 atgacccgat atatagatac cgaccacctc tttttcctgt tttaattttt tcatggcacc
     2341 ccacggttca cagggcggca cttcgggttc tggaatctgc acatcactgg ctcctccaaa
     2401 caaactgact tgggccgaat tcatcgattc ctgataacgc gctgcataac gcaatacttt
     2461 ctcataaaag caaataccat cgccttcatc aaacatatac tgggccctgt gggcatcaaa
     2521 actatcaaag ccaccggcca aaataagatt ttcaaaagcc ttcttattcg cagcacgcaa
     2581 gtcgatgcgc ttggctaggt caaaaatact tttatacgga cccgcaccgc gatgggtcac
     2641 tatggtatcg accgcaccgg aaccgacccc tttaatagcc cccatcccaa aacggattgc
     2701 ccctcggtca tttacggtaa acttataggc ggattcattc acatcgggcc ctaaaacttc
     2761 tcggcccatg cgacgacact cctccataaa gaaagtaacc tgctttatat cgttcatgtt
     2821 attactgagc actgccgcca tgtattctgc cggataatga gctttgagat atgcagtttg
     2881 gtaggcaatc caagcatagc atgtcgaatg acttttatta aaggcataac ttgcaaaagc
     2941 ctcccaatct ttccaaatct tttctaagac ctcagccgga tgattttttg cctctgcctg
     3001 cttgataaat tggggcttca tcttgtccag gacagccttc tgtttcttcc ccatggcctt
     3061 gcgtaagacg tcggcctcac ctttggtaaa acccgctaat
//
LOCUS       DPUP01000103            4721 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_31214,
            whole genome shotgun sequence.
ACCESSION   DPUP01000103 DPUP01000000
VERSION     DPUP01000103.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4721)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4721)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4721
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            139..>366
                     /locus_tag="DHV98_03455"
     CDS             139..>366
                     /locus_tag="DHV98_03455"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05426.1"
                     /translation="MGVSTINSNFQGLKGEQHSMRVYLLIFGVFVTLTAARAQSDTEL
                     WRGYFSYNSIKDVAYGDNKVFVAAENAVYTYD"
     assembly_gap    367..491
                     /estimated_length=125
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <492..>1904
                     /locus_tag="DHV98_03460"
     CDS             <492..>1904
                     /locus_tag="DHV98_03460"
                     /inference="COORDINATES: protein motif:HMM:PF07494.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05427.1"
                     /translation="QEYNVLMVGHDNGLIEIIPNDQDQVLQIVAILNKPSIPPNIKSI
                     NDFYEYQGQVYVATDFGISVFDLSLMEFGDTYYIGELGSTISVAQTTILPPFIYAATA
                     QDGIKKALLDGPDLIDYASWETVTGGGIVAIQTLNDAVYFARTNQRVLRLTPEPSQIM
                     ADFGTDPIVDMRVNGNVLTITTESTVNTYGADFTPLDIFELPFEFGDKFSVGLGFADQ
                     IFAGTQTSGLLKRSSGQFGWTPVGPQGPLFNNPFSIDASSGQLWVGFGEITVSFNPFP
                     LSFRGLSQFQNEGWNNIPAADLFGASDIVQMKINPMNPDQVFASSFQFGLLKLTAGVP
                     EILYDESNSSLTLPTGNPAAGLRIYGSDFDRDNNLWFVQSKIDQGLLRLSPSGQIGKI
                     DLSGIINAEDELALTDLKISREGYVFFGSAENGLIGFNPSTNSFNRITEGSGNGNLPS
                     TDVRSLAFDNNNRLWIGTREG"
     assembly_gap    1905..1997
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1998..2619
                     /locus_tag="DHV98_03465"
     CDS             <1998..2619
                     /locus_tag="DHV98_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008465307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HCK05428.1"
                     /translation="LRVLYNTTGFFQSGNNVEAQPIIILEEGVAQELLFQQSVTDIEV
                     DGSNNKWIATATSGVFYLSANGQETLLRFTKENSPLPSDNVQDIAIDGDSGRVYFATT
                     KGLVAFEGSATDARDDLSGAYVYPNPVRPGFQGQVTVDGLTAGANVKITDIEGNLVFE
                     TKSQGGSVLWDTRAFGRHKVASGVYLVLITSEDAFETKVLKIMIVR"
     gene            2619..>2862
                     /locus_tag="DHV98_03470"
     CDS             2619..>2862
                     /locus_tag="DHV98_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCK05429.1"
                     /translation="MRVNTRALVLATVRYGESDVIVKMLTESSGLRSYMIRGLQKSKK
                     GPFRPAMFQPLTQLQIQAMHRDKGQLERLTEAKVSAH"
     assembly_gap    2863..2974
                     /estimated_length=112
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2975..3427
                     /locus_tag="DHV98_03475"
     CDS             <2975..3427
                     /locus_tag="DHV98_03475"
                     /inference="COORDINATES: protein motif:HMM:PF02565.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HCK05430.1"
                     /translation="IVKSSMALFLAEMFKMTLQEQEPNPELFGFLSDALLALDASEGP
                     LNFHLKIVLELQQYLGCYPDFQNEHLPYFNLEEGVFQDSSLGITRSAAVLKDLCALAK
                     TPFSHLAQWKTTTRQRRELLDLLMDYMQMHATGFKRPKSIEIYRQVFG"
     gene            complement(3438..>4273)
                     /locus_tag="DHV98_03480"
     CDS             complement(3438..>4273)
                     /locus_tag="DHV98_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010520921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCK05431.1"
                     /translation="QLTIQGQTISSNFGTIASCQYNLEQLISSGIANEIFSPDQANIA
                     PEQRLILAQLADLSYSAYQDFKNHPKFLPYLEKISTLKYYAKTNIGSRPAKRGSSDQL
                     NFSDLRAIPFVGSWSQLKQNVPGFYGVGIALEALKAQGKMTELQELYKTSAFFRTLLE
                     NSMMSLSKSYFPLTQYLKDDPEFGGFWQLIYQEYLRSKDLVLEVSGLDQLMEDSRAMR
                     ASIGVRERIVLPLLTIQQYALRSIQEIHKGEKNDRDLAIYEKMVTRSLFGNINASRNS
                     A"
     assembly_gap    4274..4353
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4354..>4721)
                     /locus_tag="DHV98_03485"
     CDS             complement(<4354..>4721)
                     /locus_tag="DHV98_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010520921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCK05432.1"
                     /translation="PNCDVIPLFETIDDLKAADKVMEALYTNSEYQKHLQRRGNRQSI
                     MLGFSDGTKDGGYLMANWAIYRAKERLTEVSRAHGITALFFDGRGGPPARGGGKTHQF
                     YASLGNTIEHEEVQLTIQGQ"
BASE COUNT         1155 a          901 c         1001 g         1254 t
ORIGIN      
        1 gtcaaaggcg ctaatattgc gggctttgtt aaaatcgccg aggccatgat ggcacagggc
       61 gtggtttaag cacttcgcat tttccgatta aaggccccat tttggggctt tttttttgaa
      121 cgaatacacc cattaatcat gggggtttct acaataaata gtaattttca aggtttaaag
      181 ggcgagcaac acagtatgag agtttatcta ttgatttttg gcgtatttgt caccttgact
      241 gcggctaggg cgcaatcgga cactgagctt tggaggggct atttttcata caacagcata
      301 aaggatgtgg cttacggaga caacaaggtt tttgtggcgg ctgaaaacgc cgtatacact
      361 tatgacnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn ntcaagagta caatgtactc atggtgggac acgataatgg ccttatcgaa
      541 atcattccaa atgaccaaga ccaagtcctt cagattgtgg ccattttgaa taagccgagt
      601 attcctccta atatcaagtc gattaatgat ttctatgagt atcagggaca agtttatgtc
      661 gctactgatt ttggcatttc tgtttttgat ctctcgctta tggaattcgg ggacacctat
      721 tatattggtg aattgggaag cactatttca gtggcccaaa ccactatttt acctccattt
      781 atttatgcag caacggccca agacggcata aaaaaggcct tgcttgatgg ccctgatttg
      841 attgattatg cctcttggga aacagtaacc ggagggggta ttgtggccat tcagacctta
      901 aatgacgcgg tttatttcgc cagaacaaat caacgggtcc tgcgtctgac tccagaacca
      961 tcgcaaatta tggccgactt tgggacagac ccaatcgtgg atatgcgggt taatgggaac
     1021 gtgctgacca ttactacaga atcaaccgta aatacctatg gggcagactt tacccctttg
     1081 gatatttttg aattgccttt tgaattcggg gataagtttt cagtaggtct cgggtttgca
     1141 gatcaaattt ttgccggaac tcagactagt ggactgctca agcgatccag tggacaattt
     1201 ggatggacac ccgtggggcc tcaagggccg ttatttaata acccattttc aattgacgct
     1261 tcttcaggtc aactttgggt tggttttggt gagatcacgg taagttttaa tccatttcca
     1321 ctgagtttta ggggcctcag tcaatttcaa aatgagggat ggaataatat tccagcagcg
     1381 gatctttttg gagcgagcga tatcgtccaa atgaaaatta atccaatgaa tccagatcag
     1441 gtttttgctt catcatttca gtttggctta cttaaattaa ccgctggggt tcccgaaatc
     1501 ctttatgatg aaagcaatag tagtttgacg ctacccacag gcaacccggc tgcaggtctt
     1561 cgtatttatg gatcagattt tgaccgggac aacaatctgt ggtttgtcca atcaaaaatt
     1621 gatcaaggat tgctgcgcct gagtccttcg gggcaaattg gaaaaattga tttatccgga
     1681 attattaatg ccgaagatga attggcctta actgatttaa agatcagccg tgaaggttat
     1741 gtttttttcg gctccgctga aaatggttta atcgggttta accccagcac caatagtttt
     1801 aatcgaatta ctgaaggctc cggcaatgga aatttgcctt ctacggatgt gcgtagtttg
     1861 gcctttgaca acaataatcg actttggatt ggaacgcgtg agggnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnngtt aagagttctt tataatacga cgggattttt tcagagcggg
     2041 aataatgtcg aagcccagcc cattataatc ctcgaggaag gggtcgcgca ggagctctta
     2101 tttcagcagt cagtcactga tattgaagtc gatgggtcca ataacaaatg gattgctaca
     2161 gccacctcag gtgtgtttta tctctcggcc aatggtcaag aaactctatt gcgcttcacc
     2221 aaagaaaact ctcctttgcc ctcagataat gttcaggata ttgccattga tggcgatagt
     2281 ggaagagtgt attttgcgac cacaaaggga cttgtcgctt ttgagggctc tgctactgat
     2341 gcccgtgatg acttgtccgg tgcttacgtc tatcccaatc cagtgcgacc gggttttcaa
     2401 ggtcaagtca ccgtggatgg gctcacggca ggggcaaacg tcaaaataac ggacatcgag
     2461 ggcaatttag tttttgaaac caaaagtcag ggaggaagtg tcctttggga tacgcgcgcc
     2521 ttcgggcgtc ataaagtagc ctccggagtt tatttagttt tgattacctc tgaagatgct
     2581 tttgagacta aagtgctaaa aattatgatc gtccgataat gagggtaaat acgcgagctt
     2641 tagtccttgc tacggtccgt tatggggaat cggatgtgat tgtcaaaatg ctcacagaat
     2701 cttcaggatt gcgcagctac atgattcggg gattacaaaa gtcaaagaaa ggccctttta
     2761 ggccagccat gtttcagccg cttacccaat tacagattca agccatgcat cgggataagg
     2821 gtcagctaga acgactgacc gaggccaaag tgtcggcaca ttnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnattgtc aagagctcaa tggccttgtt
     3001 tttggccgag atgtttaaaa tgaccctcca agagcaggaa cctaatccag aacttttcgg
     3061 gtttttaagt gatgctctat tggcccttga tgcttcagaa ggtccgttaa attttcatct
     3121 taaaattgtg ctagagctgc aacaatatct gggctgttat ccggattttc aaaatgagca
     3181 cctgccctac tttaatctcg aagagggggt atttcaggat tcttcgttag gcattacccg
     3241 aagcgccgcg gtcttaaaag acttatgcgc tttggcaaag acgccattta gtcatttggc
     3301 tcagtggaaa accacgacac gtcaaagacg ggagctgctg gacttactta tggattatat
     3361 gcaaatgcac gctacaggat tcaaacgccc taaatcaata gaaatttacc gtcaggtttt
     3421 cgggtagatt ccgaaggcta tgcgctattt cggctcgcat tgatattgcc aaagagcgaa
     3481 cgggttacca ttttttcata aatggccaaa tcacggtcat ttttttctcc tttatgaatc
     3541 tcttgtatgc tgcgcagagc gtactgctgt atggtcaaca aaggcagaac gatgcgttca
     3601 cgcaccccga tggaggccct catcgcccgt gagtcttcca taagttgatc caagccagag
     3661 acttctaaaa caaggtcttt tgagcgcaaa tattcttgat aaataagttg ccaaaaacca
     3721 ccaaactcag gatcgtcttt taagtattga gtcagaggaa aatagctttt gctaaggctc
     3781 atcatgctat tttcgagaag tgttctaaaa aatgcagagg ttttataaag ctcctgcagc
     3841 tcagtcattt taccttgggc cttcagggct tcaagggcaa tgcctacgcc ataaaaccca
     3901 ggaacatttt gtttgagttg actccagctg cccacaaaag gaatagcccg gagatcacta
     3961 aaatttagtt gatcactact gccacgtttg gccgggcgac tgccaatatt ggtttttgcg
     4021 taatatttta aggtgcttat tttctctaga tagggtaaaa acttcgggtg gtttttaaag
     4081 tcttgatacg cgctatagct caaatcagcc aattgtgcta aaataagcct ttgttctggg
     4141 gcaatattgg cttgatcagg ggaaaaaatt tcattggcaa tacctgaact aatcagttgt
     4201 tccaaattgt actgacagga agcaatagtg ccaaaatttg aacttatcgt ttgaccttga
     4261 atggttaact gaannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnttgacct tgaatggtta actgaacctc
     4381 ttcgtgctct attgtgtttc ccaaagacgc atagaactga tgggtctttc ctcctccccg
     4441 tgccggtggc cctccccgac cgtcaaaaaa caaggcagta attccgtgag cgcgagacac
     4501 ttcggtcaag cgttctttgg cgcgataaat ggcccagttg gccataagat acccgccatc
     4561 tttggtgcca tcactaaatc caagcattat agactgtcga ttcccgcgcc tttgaaggtg
     4621 tttttggtat tcagaattcg tgtataaggc ttccatgacc ttatccgctg ctttaaggtc
     4681 atcaatggtt tcaaacaaag ggataacatc acaattaggg g
//
LOCUS       DPUP01000104            5073 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3148,
            whole genome shotgun sequence.
ACCESSION   DPUP01000104 DPUP01000000
VERSION     DPUP01000104.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5073)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5073)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5073
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1371)
                     /locus_tag="DHV98_03490"
     CDS             complement(<1..1371)
                     /locus_tag="DHV98_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator"
                     /protein_id="HCK05433.1"
                     /translation="MNEIKVLWVDDEIDLLKPHILFLEQRNYQVTPVRSGTEALNAIK
                     STGFDIVFLDENMPGLSGLETLQEIKEIQDSLPVVMITKSEEEHLMEEAIGSKIADYL
                     IKPVNPNQLLLSLKKNLDHYRLVSQKTNQNYQQEFRKIAMDLSTISQPEEWSDLYQKL
                     VFWEMELDNIENTGMMEILESQKQEANTQFCKFIENNYQDWFDGTVKAPAMSHTLFKE
                     KVAPLLDDQPTLLVVIDNLRYDQWKAFEPLLSPLFKKREESLFYSILPTATQYSRNAI
                     FSGLTPADMEKLHPNYWRNDTDDGGKNLYEEEFLSLQLKRLGLDLNWSYHKITSLRQG
                     KKLSENFRVHKDEQLTVVVYNFVDMLSHAKTEMEVIKELASNDKSYRSLTASWFKNSP
                     LLDIIHQAAAMNFKLLITTDHGTVNVKTPSKVVGDKQTSLNLRYKTGRSLTYNQKEVY
                     AVKNPGA"
     gene            1474..>1988
                     /locus_tag="DHV98_03495"
     CDS             1474..>1988
                     /locus_tag="DHV98_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003438839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCK05434.1"
                     /translation="MSNSHKLKIINDPIYGFISVHNELIFQIIEHPYVQRLRHISQMG
                     LSYLVYPGAHHTRFHHALGAMFLMQRAVAILRQKRVDISSDEEVALYLAILLHDIGHG
                     PFSHGLEGVIVPNRSHEELSLAIMEGLNKEYDGALDLAIEIFTGRHNRKFLKQLVSGQ
                     LDMDRLDFLRR"
     assembly_gap    1989..2091
                     /estimated_length=103
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2092..2825
                     /locus_tag="DHV98_03500"
     CDS             <2092..2825
                     /locus_tag="DHV98_03500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HCK05435.1"
                     /translation="LDFLRRDSFYTGVAEGSISAQRLIAMLHVVDDCLVVEEKGIHSV
                     ENFLVARRLMYWQVYLHKASLCAEHILMKIIKRARELKCSGIDLGIVGSLNYFLSYDQ
                     NEELSQESLDHFLNLDDIDILAALKLWMSHDDFVLSQLSKTIIKRRLFKIKIKEAEFS
                     DEKLEEKRQKFAKKHNLSTHDASYFVFTGSISNLAYNQSKENITLLRKDGSLIDVAQA
                     SDQLHIKALSEKVVKYFQCYPKTLE"
     assembly_gap    2877..2900
                     /estimated_length=24
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2901..3897
                     /gene="lpxD"
                     /locus_tag="DHV98_03505"
     CDS             <2901..3897
                     /gene="lpxD"
                     /locus_tag="DHV98_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HCK05436.1"
                     /translation="NGTVDGDGAVAVSRLSKIEEGTQGSLTFLANPKYTNFIYTTQAS
                     AVIVSQDFNAEQEIQSTLIRVEDAYSAFSTLLSYYNQVKMNKLGIEQPVYLSDSARYG
                     ENCYIGAFAYIGDNAVIGNNVKIYPNAYIGDNVHIEDNAVIFSGAKIYSETQIGSNTV
                     IHSGAIIGADGFGFSPNEEGAYDKVPQIGNVIIESNVDVGAGTTIDRATLGSTIIREG
                     VKLDNQIQIAHNVEIGKNTVIAAQTGIAGSTKIGENCMIGGQVGIVGHITIGNNVKIQ
                     AQSGIGRSIKDNEVLQGSPAFNYGDYSKSYVHFKNLPKIVRAFNALEKNINDDKQ"
     gene            3884..>5073
                     /locus_tag="DHV98_03510"
     CDS             3884..>5073
                     /locus_tag="DHV98_03510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP
                     dehydratase"
                     /protein_id="HCK05437.1"
                     /translation="MTNSNGKQTTIASEVSLTGVGLHTGKNVTLTLKPAPENYGYKFV
                     RVDLEDAPVIEADANYVLNTQRGTNLEKSGVKIQTSEHVLAALVGMEVDNCILELDAP
                     EPPIMDGSSKFFVQAIEQAGIVVQEADREEFVVDEVISFLDKETGSEITIIPAKEYQV
                     TTMVDFGTKILGTQNACLNTLSDFKEEISNSRTFSFLHEIEMLLEHGLIKGGDLNNAI
                     VYVDKELSAGTMDKLRTAFKKDKISVKPNGILDNLTLHHPNEAARHKLLDVLGDLALV
                     GSRIRGKVIANKPGHYVNTQFAKKLSKIIKDRKRNAIPKFDIHKTPVKDVNQIMAMLP
                     HRPPFLLVDKILELGSDRVVGLKNVTMNEPFFVGHFPGAPVMPGVLIVEAMAQTGGIL
                     EIGRA"
BASE COUNT         1443 a          917 c         1091 g         1495 t
ORIGIN      
        1 ggctcctgga tttttaacgg catagacttc cttttgatta taagtaagac ttcttccggt
       61 tttataacgc agattgagac ttgtctgttt atcgcccact acttttgatg gggttttgac
      121 attcacagtc ccgtgatctg tagtgatcaa aagtttgaaa ttcatggcag cagcctgatg
      181 aataatatct aataatggag aatttttaaa ccaacttgcg gttaatgagc gatatgattt
      241 gtcatttgag gcaagttctt taatgacctc catctcagtt ttcgcgtgag acagcatatc
      301 gacgaaatta taaacgacca ccgtcaattg ttcgtctttg tggactctga agttttccga
      361 taacttttta ccttgacgta atgaggtgat tttatgataa ctccaattta gatcaaggcc
      421 aagacgtttt aactgaagac taaggaactc ttcttcgtac aaatttttcc ccccgtcatc
      481 agtgtcattt cgccaataat tggggtgtag tttctccatg tctgcggggg ttaagcccga
      541 aaaaatagca tttctggaat attgtgtggc ggtaggtagg atgctgtaaa agagcgattc
      601 ctcccgtttt ttaaaaagcg gactaaggag tggttcaaaa gccttccatt gatcgtagcg
      661 caaattatca atgacgacca gtagcgtggg ttggtcgtct aaaagcggag caactttttc
      721 tttaaataag gtatgagaca tggccggggc cttgactgtg ccatcgaacc agtcttgata
      781 gttattttca atgaatttac aaaactgtgt attggcttct tgcttctggc tttcaaggat
      841 ttccatcatg cctgtgttct ctatattgtc gagctccatc tcccaaaaca ccaatttttg
      901 atataaatca ctccactctt ctggttgact tatcgtggac aaatccatgg caattttccg
      961 aaattcttgt tgatagtttt gatttgtttt ttgagaaacc aatcgataat ggtcgagatt
     1021 ttttttaagg ctcagaagca attgatttgg attcacaggt tttatcaggt aatcggctat
     1081 ttttgagcca atagcttctt ccatgaggtg ctcttcttca ctttttgtga tcattacaac
     1141 cggcaggctg tcttgtattt cctttatttc ttgcagtgtt tccaggccag acaaacccgg
     1201 catattttca tccaaaaaga caatatcaaa accggtgctt ttgatcgcgt ttagcgcttc
     1261 agtaccgctg cgcacagggg tgacctgata attgcgttgt tcaaggaaca aaatatgggg
     1321 tttcaataaa tcaatttcgt cgtctaccca aagaacttta atctcattca tatatgtata
     1381 tttgtcttgc gcttttctat ttatatataa cctttgagga cgcgttttag tatgctaaaa
     1441 gtacacctaa aggtgctaat taatcgttaa aatttgagta attctcacaa gctgaaaatt
     1501 ataaatgatc caatttatgg attcatttca gtgcacaatg aattgatttt tcaaatcatt
     1561 gagcatccct atgttcagcg gttaaggcat atttctcaaa tgggtttgag ttatttggtt
     1621 taccctggag cacatcacac tcgatttcat cacgcattgg gcgccatgtt tctcatgcag
     1681 cgcgctgtgg cgatattgcg acaaaaacgg gtggatattt cgagtgatga ggaagtagca
     1741 ttatatcttg ccatattact gcatgatatc ggccatggcc ctttttcaca tggccttgag
     1801 ggcgtcatcg ttcccaatag gtctcatgag gagctttctt tggcgatcat ggaaggccta
     1861 aacaaggagt atgatggagc gttggattta gccatagaga tttttaccgg gcgccacaat
     1921 agaaaatttt tgaaacaact tgtttcgggg caactcgaca tggatcgctt ggattttttg
     1981 agaagagann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngcttggatt
     2101 ttttgagaag agatagcttt tacactgggg ttgctgaagg atcaataagc gctcagcgtt
     2161 tgattgcaat gctgcatgtg gtcgatgatt gtctggtggt tgaagaaaaa ggaattcatt
     2221 ctgttgagaa tttcttagtg gctcgacgac tgatgtactg gcaagtttat ttgcacaaag
     2281 cgtctttatg tgccgagcat attttaatga aaattatcaa gcgagcgcga gaattaaagt
     2341 gttctggaat agatctgggc attgtgggct cattgaatta ttttttatcc tatgatcaaa
     2401 acgaggaatt atctcaggag tcgttggatc attttttaaa cctggacgat attgacatcc
     2461 tggccgcttt aaaactatgg atgagtcatg atgactttgt gctcagtcaa ttatccaaaa
     2521 cgattattaa acgcagactc tttaaaatca agatcaaaga agctgaattt tccgacgaaa
     2581 aactggaaga aaaacgtcaa aagtttgcga aaaaacacaa cctttcgact catgatgcat
     2641 cttattttgt gtttacagga agtatttcaa atttggccta taaccagtct aaagaaaaca
     2701 taacgcttct tagaaaagat ggttctttga ttgatgtggc ccaagcaagc gatcaattgc
     2761 acatcaaagc gctatcagaa aaggtggtga agtattttca atgttaccca aaaacccttg
     2821 aatagaaacg ctttttttat atttgcacat tgataccatc ttaatggaat ttacagnnnn
     2881 nnnnnnnnnn nnnnnnnnnn caacggcaca gtcgatggtg atggggcagt agccgtttca
     2941 cgattgtcca agatagaaga gggaacccag gggagcctga cgtttttggc caatccaaaa
     3001 tacaccaact ttatttacac tacgcaggcc tctgctgtta tcgtaagtca ggattttaat
     3061 gcagagcaag agattcagtc tactttgatc cgagttgagg atgcttacag cgctttttca
     3121 acccttttat cctattataa tcaggtgaaa atgaataaac ttgggataga acaaccggtt
     3181 tacctgtcgg attctgcgcg ctatggagaa aactgttaca tcggtgcttt tgcctatatc
     3241 ggtgacaatg cagtgattgg caataatgta aaaatctatc ctaacgcgta tatcggtgat
     3301 aacgttcata ttgaagataa tgcggtaatt ttttcgggag caaagattta ttcagaaact
     3361 cagattggtt caaatacagt cattcacagt ggtgcgataa taggggccga tggctttggt
     3421 ttttcgccta acgaggaagg ggcttatgat aaagttcctc agatcggcaa tgtaattatt
     3481 gagtccaatg ttgatgtggg cgcaggaacg actatcgata gggcaactct tggctcaaca
     3541 ataatcagag aaggggtgaa actggacaat caaatacaaa ttgcccacaa tgttgagatt
     3601 ggcaaaaaca cggtaattgc tgcccaaaca ggaattgctg gttcgaccaa gattggcgag
     3661 aattgtatga ttggtggtca agttggcatc gttgggcata ttaccatcgg aaataatgtc
     3721 aaaattcagg cgcaaagtgg tatcggacgc tcaataaaag ataatgaagt gcttcaaggt
     3781 tctccagcct ttaattatgg agactatagc aagagctacg ttcattttaa aaatttacca
     3841 aaaatagtcc gggcgtttaa tgctttggaa aaaaacatca atgatgacaa acagtaatgg
     3901 caagcaaacg accatcgctt ctgaggtttc tctaacaggc gttggcttac atacaggaaa
     3961 aaatgtaacc ttaaccctta agcctgcacc agaaaactac ggttacaaat ttgttcgtgt
     4021 ggatttagag gacgctccag taattgaagc tgatgctaac tacgtgttga atacccagcg
     4081 aggaactaat ctcgagaagt ccggggtcaa aattcaaact tcagaacatg ttttggccgc
     4141 tttggtgggt atggaagtgg ataactgtat attggagtta gacgctccgg agccgcccat
     4201 tatggatggt tcttcaaaat tcttcgtcca agccattgaa caagcgggca tcgttgttca
     4261 agaggccgat cgtgaagagt ttgtggttga cgaggtgatt tcctttttgg acaaagaaac
     4321 aggaagtgaa ataacaatta tccccgccaa agaataccaa gtgaccacca tggttgattt
     4381 tgggactaaa attttgggaa ctcaaaatgc ctgtttaaat acgttaagtg attttaaaga
     4441 ggagatttct aattcaagaa catttagttt tctccacgaa attgaaatgc tcttggagca
     4501 cgggctaatt aaaggaggcg atctgaacaa tgccatcgta tatgtagata aggaattgtc
     4561 tgctggaact atggataaat tgcgtacggc cttcaaaaaa gacaaaattt cagtcaagcc
     4621 caatggaata ttggataatc tgaccttaca tcatcccaac gaagctgcgc gtcataaatt
     4681 attggacgta ttaggtgatt tggcgcttgt gggttcgcgt attcgcggga aggtaattgc
     4741 caataagcca ggacactacg taaataccca gttcgctaaa aagctgagca aaatcattaa
     4801 agaccgaaaa agaaacgcca tacccaaatt tgacatccat aaaacgccag taaaggatgt
     4861 caatcaaatc atggcaatgt tgccccatag accacccttt ttgctggtag acaagatatt
     4921 agagctcggt tcagatcgcg ttgttggtct aaaaaatgtt acgatgaatg agccattttt
     4981 tgtgggtcat tttcctggcg cgcctgttat gcccggggtt ttaatcgttg aagctatggc
     5041 gcagaccggg ggaatattgg agatcggaag agc
//
LOCUS       DPUP01000105           20783 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1619,
            whole genome shotgun sequence.
ACCESSION   DPUP01000105 DPUP01000000
VERSION     DPUP01000105.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 20783)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 20783)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20783
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(52..414)
                     /locus_tag="DHV98_03515"
     CDS             complement(52..414)
                     /locus_tag="DHV98_03515"
                     /inference="COORDINATES: protein motif:HMM:PF01566.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05438.1"
                     /translation="MGRWVLMVYFILTLCTMFTFQTAVTIVTAGIATSLTGIGTPVVW
                     AGLILLACFLILIRGRFSVLDQVMKYVVLALTLTTVLALIFAWFNTASRPSWQQVIPN
                     STVGISFLIALWGGCQRP"
     assembly_gap    546..586
                     /estimated_length=41
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(641..1213)
                     /locus_tag="DHV98_03520"
     CDS             complement(641..1213)
                     /locus_tag="DHV98_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HCK05439.1"
                     /translation="MELSPEDILHIIAKAKSGDQKAYRQLLDHCWNMVFGFQLKRVHN
                     ESDAEDITIEAFAKAFDKIEHFDTNYNFSSWVITISKNIQIDQHRKQRNSIVVAPLED
                     QEDHGNEVPDDSLTTEDALIQEQNLIQLQTLLKMLKPMYREVLQLRYFQEMSYRDMAE
                     QLGEPLTNIKVRLLRAKKLMAELIEQNREL"
     gene            complement(1204..2325)
                     /locus_tag="DHV98_03525"
     CDS             complement(1204..2325)
                     /locus_tag="DHV98_03525"
                     /inference="COORDINATES: protein motif:HMM:PF13641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05440.1"
                     /translation="MIWSWSLLLCAAAASLIQAFFISRIRRTGAKNYLRCPSQEHLPG
                     VSVIVCAKNEAENLNKLIPEILNQRHSNFELILVNDHSSDQTQQVVEQWAKRDPRVRT
                     FTLKEKFKTPGKKAALSFGISQAAHDLLLLTDADCLPASADWIDLMTSPLRANKSVVL
                     GYGGYIKTSGVLNSVIRFETTLTAGLFLGQALAGHPYMGVGRNLAYRKDFFYAQGGFK
                     SHEHIASGDDDLLVNHGANKNNTAVVLDSKAYTWSRPKTTWRGLFNQKRRHQSAAHFY
                     RTPTKIVLSLYSGSILLFYLSLLVLALGLPLEISVCGAIMALIAVRSLYLIWQMRPVF
                     QKFHADDLYLWIPILEPVLICMQLIIFVRNRFSKPDHWN"
     gene            complement(2325..2528)
                     /locus_tag="DHV98_03530"
     CDS             complement(2325..2528)
                     /locus_tag="DHV98_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane or secreted protein"
                     /protein_id="HCK05441.1"
                     /translation="MKLVLLTIGLLIFAFAGIAIKIWGKKDGKFAGTCASQSPFLNKD
                     GDSCSFCGKTPDQFSECKGTEQA"
     gene            complement(2609..3616)
                     /locus_tag="DHV98_03535"
     CDS             complement(2609..3616)
                     /locus_tag="DHV98_03535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008256620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylenolpyruvoylglucosamine reductase"
                     /protein_id="HCK05442.1"
                     /translation="MQQNKSLKAFNTFGVESHAEWFVEARTADEVWSCLKDFRDKPIM
                     VLGGGSNLLLTKDIDGLVLKISLKGITIVEESEHHVLLEVQCGEIWHEVVEYCLEHDF
                     GGIENLALIPGQMGTAPIQNIGAYGVELKDVFDSCVALNRSTGHKEVFNLQDCQFGYR
                     ESVFKNELKNQFVILSVRMRLTKKQHQLRLDYGSISDVLKQQGIKNAGIRQVAQAVIA
                     IRQSKLPDPKKLGNSGSFFKNPIVPEAEVNRLLDIYPDLPSYPVENELKKIPAGWLIQ
                     RAGFKGFRQGDAGVHKNQALVLVNYGKATGLEIKELAQSIQQKVLKDFGIALTPEVNI
                     I"
     gene            complement(3619..>4770)
                     /locus_tag="DHV98_03540"
     CDS             complement(3619..>4770)
                     /locus_tag="DHV98_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781221.1"
                     /note="catalyzes the formation of oxalozcetate and
                     L-glutamate from L-aspartate and 2-oxoglutarate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HCK05443.1"
                     /translation="PIRKLVPYAEQAYKQNKKVYHLNIGQPDIKTPQVALDAVSHHGL
                     SVLAYSRSEGSEQYREKIAQYYKRKSIAVSAQDIVVTTGGSEALLFAMGSVCNAGDEV
                     IIPEPFYANYNGFARASDVTVVPVVSGIEDNFALPPIADFEKHITPKTKAILICNPGN
                     PTGYLYSKQEIQSLVALVKKHDLFLIADEVYREFTYDGAPHYSIMQEPGLEEHAILID
                     SVSKRYSMCGARIGCLVSKNKTLVATALKFAQARLSPPTFAQIASEAALETPQSYFDE
                     VITEYQERRDTLVAELQKIPGVIIGQPKGAFYCIAQLPVNNSNDFAQWLLESFDLNGE
                     TVMVAPAAGFYSSPGMGLNQVRIAYVLNKQSLINAVAIIKAALEVYPNP"
     assembly_gap    4771..4860
                     /estimated_length=90
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4937..5323)
                     /locus_tag="DHV98_03545"
     CDS             complement(4937..5323)
                     /locus_tag="DHV98_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05444.1"
                     /translation="MKKLFVFIALFIAGLSVHAQAKIEFKSETIDYGNIAKGSDGVRV
                     FEFTNTGDQELVISNVKSSCGCTVPEKPKGPIAPGATGEIKVKYDTKRVGPIRKTVTV
                     YSNATEPIKALKIKGVVEANKSILEN"
     gene            5447..8158
                     /locus_tag="DHV98_03550"
                     /pseudo
     CDS             5447..8158
                     /locus_tag="DHV98_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710781.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
     assembly_gap    6498..6575
                     /estimated_length=78
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(8166..8450)
                     /locus_tag="DHV98_03555"
     CDS             complement(8166..8450)
                     /locus_tag="DHV98_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA-binding protein"
                     /protein_id="HCK05445.1"
                     /translation="MKNKDLDIAFEESVALVSKHQEPFPADILLKLYAYYKIATRDRE
                     LPQGSKPLINAFKTNALFQAQGLSQQEAKRKYIETAHTYFIYRDSKGIDP"
     gene            complement(8440..9093)
                     /locus_tag="DHV98_03560"
     CDS             complement(8440..9093)
                     /locus_tag="DHV98_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase family protein"
                     /protein_id="HCK05446.1"
                     /translation="MFHKEGYRIIVVTFIVVAVIFLSAHYFINTAWLTYSLWGIGFVF
                     LALILQFFRNPKRNFIPNDKRVLSPVDGKVVVIEEVFEPEYFKDKRLMISVFMSPINV
                     HVTRYPVGGKILYSKYHPGKYLVAWHPKASLENERTTVVVESSEFGPVLFRQIAGALA
                     KRIVNYAQEGDLAAQTTDSGFIKFGSRVDVYLPVNIPVTVALNQVVKGGLSVLAGEE"
     gene            complement(9083..9883)
                     /locus_tag="DHV98_03565"
     CDS             complement(9083..9883)
                     /locus_tag="DHV98_03565"
                     /inference="COORDINATES: protein motif:HMM:PF01148.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HCK05447.1"
                     /translation="MRELLVRTISGLIYMTLILFAMYADAQYYLLLTACFGLLTLFEF
                     QRLVQIKSLLPYAIFVLLFVGIHQDIFPEWMDLVIGVLGVLMNTYLILNLLEFISHQR
                     LERKYILMVFYIMIGVITMGLIPQISGDYDMNLIAGVFILIWVNDSMAYLVGVNFGRH
                     KLLEHISPKKTVEGTLGGVTGALIAAGIMAQYFDGQSLRLWLVLALLISVFGTLGDLV
                     QSKFKRKAQVKDSGALLPGHGGIYDRLDSIIFVSPFVYCLLQITAYVS"
     gene            complement(9952..10554)
                     /locus_tag="DHV98_03570"
     CDS             complement(9952..10554)
                     /locus_tag="DHV98_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein B/C"
                     /protein_id="HCK05448.1"
                     /translation="MGLFKRLLGEKSKSDDKAPSKERSKYFPEQELPTDEKFTRNFSK
                     KGGKFLYCLNWEEVAEAFDNILLENDWYEQEVFCMDSALIKKFDGYNLNFSQSDKSCF
                     VLSQCESLVASNGAILLCSNQIKEKKLSELPANIIIFATTSQLVETISEGLHLIKSRS
                     NKSIPTNITTIQDFETGDEKDFMSYGSSTKNLYLLLMENL"
     assembly_gap    10689..10730
                     /estimated_length=42
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(10809..12851)
                     /locus_tag="DHV98_03575"
     CDS             complement(10809..12851)
                     /locus_tag="DHV98_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M41"
                     /protein_id="HCK05449.1"
                     /translation="MSKEKKPELKRPKINSYWIYIAIFVMFMGLNIFGGGNLSDPIST
                     SQVEFQSYLKNGDVEKVEIINRKLARVYLTEEARSNSIHANKFKDRIIKPGPNDAAYQ
                     FEFGDLQNFENSLNTIKTENGLNTKVVWNTETNLWAEFLPSILFFALIIGVWLFIMRR
                     MSGGGAGGAGGQIFNIGKSKARLFDEKTDVKTTFKDVAGLEGAKEEVQEIVDFLKHPE
                     KYTALGGKIPKGALLVGSPGTGKTLLAKAVAGEAKVPFFSLSGSDFVEMFVGVGASRV
                     RDLFKQAKEKSPAIIFIDEIDAIGRARGKSNFSGSNDERENTLNQLLTEMDGFGTNTN
                     VIVLAATNRADVLDKALMRAGRFDRQIYVDLPDVRERKEIFEVHLRPIKKDDTVDMDF
                     LSKQTPGFSGADIANVCNEAALIAARQGKKMVGKQDFLDAVDRIVGGLEKKNKIITAD
                     EKKAIAFHEAGHATVSWMLEHAAPLVKVTIVPRGQSLGAAWYLPEERLIVRPDQMLDE
                     MCATMGGRAAEKVIFDKISTGALSDLEKVTKQARAMVTIYGLNDKIGNLTFYDSSGQT
                     DYNFSKPYSEKTAEMIDQEISQIVESQYQRAIALLEEHKDKLTELATELLEKEVIFKE
                     SLERIFGPRPFAVPEPAEPPKTKEDHTLNDPESTQEETSPETNSVAPSDPDKTEEE"
     gene            complement(12867..13238)
                     /gene="rsfS"
                     /locus_tag="DHV98_03580"
     CDS             complement(12867..13238)
                     /gene="rsfS"
                     /locus_tag="DHV98_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HCK05450.1"
                     /translation="MQKNQADADQIVSEIIKGIEEVKGQEIQILDLRDIENTVCDYFV
                     ICSGTSNTQVNAIVNSVQKLVSKSLKEKPWHIEGSDNAEWVLMDYVHVVVHVFQKHIR
                     EFYDIEGLWGDAKSVSIETAY"
     gene            13321..14055
                     /locus_tag="DHV98_03585"
     CDS             13321..14055
                     /locus_tag="DHV98_03585"
                     /inference="COORDINATES: protein motif:HMM:TIGR00121"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HCK05451.1"
                     /translation="MIQIKIDATESTNDYLKLMLRQGVVQDGTAVRTLNQTQGRGQRG
                     ADWYFEKDKSLAISVLKIWNASDQPSPFHLQWVITQSVFAVLRELGTATWHIKWPNDI
                     MADGKKVAGLLIEHQFKGRLQSSIFGVGVNVNNSAIPQWPHAASLAQVLGKNTDLDRL
                     AQGLIQAINQACGTIHQNNFLTDLAEFNRSLFRKDILSKFEDDQQRVFTGCIQGVTQC
                     GGLLIKTENGLETYASGTVKLILTES"
     gene            complement(14061..14453)
                     /locus_tag="DHV98_03590"
     CDS             complement(14061..14453)
                     /locus_tag="DHV98_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008613436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCK05452.1"
                     /translation="MEITGSKITINKTAEEVFNFLSEVRNFESLMPENIDKFQVLSEN
                     GFLFALKGMPEIALEKKSEQAPNQLVLGAKSDKLPFTLTGNIQQEGPNQCVVQLHFAG
                     DFNPMMAMMIKGPITKFIDTLSEGLGKI"
     gene            complement(14489..15130)
                     /locus_tag="DHV98_03595"
     CDS             complement(14489..15130)
                     /locus_tag="DHV98_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HCK05453.1"
                     /translation="MILHKETAQKTAELLLQINAIKLQPQNPFTWASGWHAPIYCDNR
                     ITLSYPAIRNFIREHIANQIEEIYGKPDVIAGVATGAIGIGALVADYLNLPFCYVRPE
                     AKSHGRQNKIEGLIESGQSVVVVEDLISTGGSSLKAVEALRESGAIVKGMVAIFTYGF
                     PVASENFDNAGVQLNTLSDYSHLLIQAEKSSYITNKQADVLAQWRENPGTWSL"
     gene            15138..15761
                     /locus_tag="DHV98_03600"
     CDS             15138..15761
                     /locus_tag="DHV98_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HCK05454.1"
                     /translation="MYKVFVKDRPIIVSTEQSLGAPYQTFPLRTTDLKPIIKALNKGR
                     LTHVHLYHKNVEKIEWYLKRKLPFVIAAGGLVKNDRDEVLFIYRNDKWDLPKGHVEAD
                     EALEQAAIREVEEETGVRDLKISQFLKTTYHVFKRNGTYKLKVTYWYEMTTDYAGPLK
                     PQKKEGIKKAKWKTFKQSKKALRKSYENIKLVFPEHYLTEEANHGVA"
     gene            complement(15708..17481)
                     /locus_tag="DHV98_03605"
                     /pseudo
     CDS             complement(15708..17481)
                     /locus_tag="DHV98_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033441.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    16519..16563
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    17599..17674
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(17781..19532)
                     /locus_tag="DHV98_03610"
     CDS             complement(17781..19532)
                     /locus_tag="DHV98_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HCK05455.1"
                     /translation="MLEISELKEKKLPDLQDLAKELGVPKYRTLKKLDLVYQILDYQA
                     ANPTAVQKLIPAAVEESGQNKPDDSTNEKAPENGQRRQNNRPDQERKPRHQKAPQERN
                     KPNGAAKEDKEVEKPKHARQQQGQGQGQGQGQRQNQNQNPNQNPNPQNDQNQKSGNEQ
                     DSGNGVSKDNNHNKNNNNPRQGNHNKNKRPDHQDKNNGNRDTRNRYREPDYEFDGIIE
                     SEGVLDIMQDGYGFLRSSDYHYLSSPDDIYVSQSQIRLFGLKTGDTVLGEVRPPKEGE
                     KYFPLIKVNKINGLSPNVVRDRVSFEHLTPLFPNEKFNLADKQSTVSTRIIDLFAPIG
                     KGQRGMIVAQPKTGKTMLLKEIANAIAANHPEVYQIILLIDERPEEVTDMQRNVKGEV
                     VASTFDKEASEHVRVANIVIDKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKIL
                     SGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMEL
                     QLDRKISNRRIFPAIDLTSSSTRRDDMLLDEKVIQRMWVMRKYLADMNPVEAMEFIND
                     RIKQTRNNEEFLISMNG"
     gene            19725..>20036
                     /locus_tag="DHV98_03615"
     CDS             19725..>20036
                     /locus_tag="DHV98_03615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008257547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4293 domain-containing protein"
                     /protein_id="HCK05456.1"
                     /translation="MIQRIQTLYLLGALAADAGFYFVGKFDAAATTDQWSLGAIDRTL
                     QLIVMVLIVWAIFKFKQRLHQFVLNRLSIILNFVLVGVFAYQSLNLPGEASVSQKGIG
                     VL"
     assembly_gap    20037..20118
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <20119..20231
                     /locus_tag="DHV98_03620"
     CDS             <20119..20231
                     /locus_tag="DHV98_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013070469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4293 domain-containing protein"
                     /protein_id="HCK05457.1"
                     /translation="KGIGVLLPIISIVFLVLANKAIKRDEDLVKSVDRLR"
     gene            complement(20318..>20783)
                     /locus_tag="DHV98_03625"
     CDS             complement(20318..>20783)
                     /locus_tag="DHV98_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YfcE family phosphodiesterase"
                     /protein_id="HCK05458.1"
                     /translation="THSDIDDIVLKRASEVDQVWHAGDIGAISVTDALKQSAPLKAVY
                     GNIDQATIRAEFPKELIFDCEGIRVYMTHIAGYPGRYNATTRKALEQHQPNLVICGHS
                     HILKVMRDPKYGHLHMNPGAIGRHGFHKARTMLRFKIEQGQIKDLEVLEYKR"
BASE COUNT         5543 a         4310 c         4483 g         5993 t
ORIGIN      
        1 gattgagttg tttcttttca accgcccata gggattgcca aatagcgagg tctaagggcg
       61 ctggcatcca ccccataaag caattaagaa ggaaataccc acagttgagt ttggaatgac
      121 ttgttgccaa cttggacggg acgcggtgtt aaaccaagca aaaattaatg ccaggaccgt
      181 cgtcagggtt aaggccaaaa cgacatattt catcacttga tccaagacgg aaaatcgccc
      241 gcgaataagg attaaaaaac aggccaatag aattaaaccc gcccaaacga caggtgtacc
      301 tattccggtt aaagaagtcg caatacccgc tgttactatg gtaacggctg tttgaaaggt
      361 aaacatggtg catagggtaa gtatgaaata aaccatcagt acccaacgcc ccattttatt
      421 gaaggccgtg agtaaatctt gaccggtgcg gcttgtgtaa tggaccccaa aagcgaaaaa
      481 cggatatttt ataaggttga tcagcagtaa cgcccaaata aggccaaaac caaaatcagc
      541 gcccgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncaat ggctgcgcca
      601 gcaaacatga taccgggccc taatttttta aaccaaccca tcataattca cgattttgct
      661 cgataagttc tgccatgagt tttttagccc tcagcagccg tacttttatg tttgttaatg
      721 gttctccgag ttgttccgcc atatcgcgat aggacatttc ttggaaataa cgcaattgta
      781 aaacctcacg atacatgggt tttagcattt tcaaaagggt ttggagctga attaaattct
      841 gctcttgaat caaggcatcc tcagtggtga ggctatcgtc tggaacctca tttccgtggt
      901 cttcctggtc ctcaagtggg gcaacgacaa ttgagttgcg ttgcttgcgg tgttgatcga
      961 tttgaatgtt tttggaaata gtgatcaccc aagaactaaa attatagttg gtatcgaagt
     1021 gttcgatttt gtcaaatgct ttggcaaaag cctctatggt aatgtcctca gcgtctgatt
     1081 cgttatggac gcgtttgagc tgaaaaccaa aaaccatatt ccagcaatga tccagcaatt
     1141 gtctataggc cttttgatct ccagactttg ctttggcgat aatatggaga atatcctctg
     1201 ggcttagttc caatggtcag gttttgaaaa gcggttccga acaaatataa ttaattgcat
     1261 acaaattaat acgggctcaa gtatcggaat ccagagatat aaatcgtccg cgtgaaattt
     1321 ttgaaagact ggcctcatct gccagatcag gtaaagcgag cgcacggcaa tgagtgccat
     1381 gatggcccca caaacagaaa tttccaaagg taggcccagt gcaagaacaa gcaaggataa
     1441 ataaaaaagc aggatacttc cggaataaag gcttaacacg attttagtcg gggttctata
     1501 aaaatgtgca gcactttgat ggcgtctttt ttgattaaaa agaccccgcc atgtggtttt
     1561 aggtcgtgac caagtatagg cttttgagtc aaggaccact gctgtgttat ttttatttgc
     1621 cccatgatta accaacaaat cgtcatctcc cgaagcaata tgctcatgag atttaaatcc
     1681 gccctgagcg taaaaaaaat ctttgcgata agccaaattt ctaccgacac ccatataagg
     1741 atggccggcc aaagcctggc ctaaaaacaa gcccgccgtt aaggtcgttt caaatcgaat
     1801 cacggaattt aaaaccccgg acgtttttat atatcctccg taacctaaga caaccgattt
     1861 attcgcccta aggggtgagg tcataaggtc aatccaatcg gcagaggcgg ggaggcaatc
     1921 ggcatcggtt aaaagtaaaa ggtcatgagc ggcttgactg atgccaaaac tcaaggccgc
     1981 cttttttccg ggcgttttaa atttttcttt aagtgtaaaa gtacgtactc tagggtctct
     2041 ttttgcccac tgttcaacga cttgctgggt ctggtcgctc gaatgatcgt ttaccaaaat
     2101 gagttcgaaa tttgaatgcc tttgattgag aatttcggga attaatttat tgagattctc
     2161 ggcttcgttt ttggcacaaa caattacaga gaccccgggt aaatgttcct gggaggggca
     2221 tcttaggtaa tttttcgccc ccgttctgcg tattcgcgaa atgaaaaatg cttgaattaa
     2281 ggaagctgct gcggcgcaca acagtaagct ccaagaccag atcattaggc ctgctccgta
     2341 cctttacatt ctgagaattg atccggtgtt ttgccacaaa agctacatga atcaccgtct
     2401 ttatttaaaa atgggctttg agaagcacag gttcctgcaa atttcccgtc ttttttaccc
     2461 catattttta tggcgatacc ggcaaatgca aaaattaaaa gtccaatggt aagcagtact
     2521 aatttcatgt gacaaaatta caacaatgac tgcaaaatag aatagatttt tttgttttct
     2581 cgcgagaact tccggcgcga aagaggcctt aaataatatt tacttcgggt gttaatgcga
     2641 tgccaaagtc ctttaaaacc ttttgttgaa tactttgcgc taattctttt atttccaatc
     2701 ctgtagcctt cccgtaattc actaaaacaa gggcctggtt tttgtgcact ccggcatccc
     2761 cttgacgaaa ccctttaaac ccagcgcgct gaatgagcca gcctgccggt atttttttta
     2821 attcattttc cactgggtag ctgggtaaat cgggataaat gtccagaagg cgattgactt
     2881 ccgcctccgg aacaatgggg tttttaaaaa aactaccact attgcccagc ttttttgggt
     2941 cgggtaattt cgattgtctt atcgcgatca ctgcttgggc aacctggcga atacccgcgt
     3001 ttttaatccc ttgttgcttg aggacgtctg agatgctgcc atagtccaat cttaattgat
     3061 gttgtttttt ggtgagccgc atccgcacgc ttaaaataac aaactgattt ttgagttcgt
     3121 ttttaaagac gctttctctg tagccaaatt gacaatcctg aaggttaaaa acttccttat
     3181 ggcccgtgct gcggtttagg gcaacacacg aatcaaaaac atctttgagc tcgacgccgt
     3241 atgcgccgat attttgtatc ggtgcggtgc ccatttgacc gggaattaag gcgaggtttt
     3301 caatgccgcc aaaatcgtgt tctaaacaat attcaacgac ctcatgccaa atttcaccgc
     3361 attgaacttc aagcaggaca tgatgttcag attcttcaac aatggtaatt cctttaaggc
     3421 ttattttgag aacaaggcca tcaatgtctt tggtaagcaa caggttactg ccgcccccga
     3481 ggaccattat gggtttgtcc cgaaagtcct taagacagga ccaaacctca tcagctgttc
     3541 gggcttcgac aaaccactct gcatgacttt caacgccaaa agtattgaag gctttaagtg
     3601 atttgttttg ttgcatcctt agggattggg ataaacctca agcgcggctt taattatcgc
     3661 gactgcgttg atcagacttt gtttattgag cacataggcg atacgcacct gattaagccc
     3721 cataccgggg ctagagtaaa accctgctgc tggagcaacc ataaccgttt caccgttgag
     3781 atcaaaagat tccaaaagcc attgagcgaa gtcattactg ttgtttaccg gtaactgggc
     3841 aatacaataa aaagcgcctt tgggttggcc aataataacc ccaggtattt tttgtaattc
     3901 agccacaagg gtatctcgtc gctcttgata ttctgtaatc acctcatcaa agtaagattg
     3961 aggcgtttca agcgccgctt cactggcaat ttgcgcaaaa gttggggggc tcagcctagc
     4021 ctgggcaaat tttaatgcgg tggcgactaa ggttttattt tttgaaacca ggcatccaat
     4081 gcgggcgccg cacatactat aacgtttaga tacagaatca attaatatgg catgttcctc
     4141 aagtcctggc tcttgcataa tcgaataatg tggcgcacca tcgtaagtaa attcgcggta
     4201 cacctcatct gcgatcagaa ataaatcgtg tttttttact aaagcaacga ggctttggat
     4261 ctcttgtttg gaatacaaat atcccgtagg attgcctgga ttgcaaataa gaatggcctt
     4321 agttttgggg gtaatatgct tttcaaaatc cgcgatagga ggtaaggcaa aattatcctc
     4381 tatacccgaa acaactggaa ctacggtaac atcactcgcg cgagcaaacc cgttgtaatt
     4441 cgcatagaac ggctcgggga taatgacctc atctcctgcg ttacacacgc tgcccatggc
     4501 aaataacaag gcctcacttc ctccggttgt gaccacgatg tcttgagcac taaccgctat
     4561 cgattttctc ttgtagtatt gagcaatttt ttcacggtat tgctccgatc cttcactccg
     4621 tgaataagct aaaacagaga ggccatggtg acttacggcg tctaaagcga cttgtggtgt
     4681 tttaatgtca ggttgaccta tattgaggtg ataaaccttc ttgttttgct tataggcctg
     4741 ttcggcataa ggaactagct ttcttatggg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4861 cgggcatttg agcccctttg gttgaaattt gtggcatgga gatccgaaag ttttaagggc
     4921 taatgctttg taatcactag ttttctagaa tgcttttgtt cgcttcaacg acccctttta
     4981 ttttaagggc ttttattggc tctgtagcat tcgagtatac cgttaccgtc ttacgaatag
     5041 gcccgacgcg tttggtgtcg tattttactt ttatttctcc agttgctcct ggtgcgattg
     5101 gcccctttgg tttttcgggc acggtacaac cacagctgga ttttacattt gagataacca
     5161 attcttgatc tcctgtattg gtgaattcaa aaacgcgaac accatcactg cctttggcaa
     5221 tatttccgta gtcaatagtt tctgacttaa attctatttt ggcctgtgca tggacgctga
     5281 gtccagcgat aaatagcgcg ataaaaacaa ataatttctt catggttctc ggtttaaaag
     5341 actaatgtat tgaactttta cacaatgagc aaaatgctcg gcttactttt ataatcttta
     5401 acttataact acttttgccc ccgagcgcta caaaaattaa accaccatgg ctggagttgg
     5461 caaatacaat gcacaagagg ttgaaaatca ctggtatgat tactggatga atcacggata
     5521 tttccacagt gaaatcgatg aaagaacccc ctataccatt gtcatccctc caccgaatgt
     5581 tactggggtt ttacacatgg ggcatatgct caacaatacc cttcaagatg tactgatccg
     5641 tcgtgcacga ttaaaaggat ttaacgcctg ttgggttccg ggaacagacc acgcgagcat
     5701 cgccaccgag gctaaagtgg tggccaaatt aaaaagtgaa ggcatcgaaa agtctgattt
     5761 aacccgtgaa gaatttttag atcacgcctg ggagtggacc cacaaacacg gaggaattat
     5821 tctagagcag ctcaaaaaac tcggggcctc ttgtgattgg cagcgcacca aatttaccat
     5881 ggatcccgac ctttctgaat ctgtgattca ggtctttgtt gatttgtatc gcaagggatt
     5941 gatttacaga gggtatcgta tggtcaattg ggatccagaa gccaaaacga ccttaagtga
     6001 tgaagaagtc attcatcagg agcgccaagg gcatctgtat tatatcaatt atgcagtagc
     6061 tgattctaag gaaaaggtat taatcgcgac cacacgacca gaaactttgc ttggggatac
     6121 ggcagtttgt attcatccgg aggatccaag gtatacgcac ctcaaaggga aagaggttat
     6181 tgttcctatt tgtggcagaa aagtgcccat catagaggat acttatgtgg ccatggactt
     6241 tggtacaggt tgtttaaaag taacgccggc tcatgatgaa aatgacaaag ttttaggaga
     6301 aaagcaccag ctagaggtca tcgatatttt taacgatgat gcgacattaa atgagcaagg
     6361 actccattac aaaggacaag atcgatttgc ggttcgcaaa gcgatcgtgg aagaacttaa
     6421 gactttgggc tgcttggaaa aggtggaaac acacacgcac aaagtaggca ctagcgaacg
     6481 cactggggcg gtaatagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntagaa ccaaagctga gtgatcagtg
     6601 gtttttaaaa atgaaagatt tggcgcagcc ggccttggat gccgtgctta acaaggaggt
     6661 gatgctcgtt ccagaaaagt ttatcaatac ctatcgccac tggatggaag gggttcgtga
     6721 ttggaatatt tcccgtcaac tttggtgggg ccatcagata ccggcctatt attacggttc
     6781 agggcgtgaa gattttgtgg tcgccgctac cttggaagaa gcccttgaat tggcgcgcaa
     6841 gcgctctgga aatgctgaat tatctcatga ggacttgaca caagatgcgg atgccttaga
     6901 tacttggttt tcgtcatggt tatggccgat tagtgttttc gacggaatcc gtaatccaga
     6961 caatcctgaa atcaattatt actacccgac taatgatttg gtgaccgctc ctgagatttt
     7021 gtttttctgg gtggcccgaa tgattattgc gggttatgaa taccgaggtg ctcgcccgtt
     7081 tgaaaacgtc tatctcacgg gaattgttcg tgacaaacaa agacgtaaaa tgagcaagtc
     7141 cctagggaac tctccagatc ccttagattt gattgacaaa tacggtgctg acggcgttcg
     7201 cgtggggatg ttattgagct ctcctgcagg aaatgacctg atgtttgacg aagatctttg
     7261 ccaacagggg agtagctttg tcaataaaat ttggaatgcc tatcgactgg tttcggggtg
     7321 gaccatctca gaggaaattc cccaaagtga cagtgatcgc aaagcgattg agtggtatgc
     7381 ccaaaagttc caatccgtcc tcggtgaaat tgaagatcat ttcagtaaat atcgcatatc
     7441 cgatgccttg atggcgacct acaagttggt ttgggacgac ttttgttcct ggttcttgga
     7501 gtgggtgaaa ccagaatatg gaaaggcgat aagtgcagac acctatgctc aggttgttgc
     7561 gctatttgag gctaatctaa aaattcttca cccatttgtg ccgtttgtgt ctgaagagat
     7621 ttggcaaaaa ttatcggtta gaaccaaaga tcaggcgctg atcattgcgc aatggccaga
     7681 aattaatgcc cctgacacgg atttgattca agcttttgaa cacacaaaag aagttgtatc
     7741 gggaattcgt accctgcgca aggaaaataa tatttctttt aaagagacca tagatttaac
     7801 ggtaaatgat gtggcgaacc taggagatta ttaccaatcg gcagtggcaa aattttgtaa
     7861 tgtcgctcag gtgaactacg ccgatgtcgc tcctgaaggc gccttgagtt ttcgggtaag
     7921 aagcaatgag tattatgtgc cggtaagtgg ttatgtcgat gttcagcagg aacgcaaaaa
     7981 attactagag gagctcgcct atacagaagg ttttttaaag agtgttcggg ggaaactcag
     8041 taacgctcga tttgtcgata atgctccaga ggctgtagtc gctgccgagc gtcagaaaga
     8101 agccgatgcc ttggcgaaaa tcaataccat aaactcagcc ttagaatcct taggatagaa
     8161 cgggcttatg ggtcaattcc tttgctgtct ctgtagataa aataagtgtg tgctgtctcg
     8221 atatatttgc gtttggcctc ctgttgtgaa aggccttggg cttgaaaaag cgcattggtt
     8281 ttaaacgcgt taatcagagg tttactgccc tgaggaagtt ctcgatcgcg ggtagcaatt
     8341 ttgtaatagg cataaagttt taacaggata tccgcaggaa acggctcttg gtgtttactg
     8401 actaaagcca ctgattcttc aaaagcgata tctaaatctt tattcttcac cggcaagaac
     8461 gctaagtcct cctttaacaa cttggtttag cgctacagtt acgggaatgt tcaccggtaa
     8521 ataaacgtca acccttgacc cgaatttgat aaacccacta tctgtggtct gggctgccaa
     8581 atctccttct tgtgcataat taacaatacg tttggctagg gcccctgcaa tttgtcgaaa
     8641 cagtaccggg ccaaattctg aactctccac aactacggtg gttcgttcat tttcgagact
     8701 tgcttttggg tgccaagcca caagatattt tccagggtgg tacttgctgt aaaggatttt
     8761 tccgcccaca ggataccggg ttacgtgcac attgatcggc gacatgaaca cagaaatcat
     8821 gagtcttttg tccttaaaat attcaggctc gaaaacttct tcaatcacga cgactttgcc
     8881 atctactggt gagagtacac gtttgtcatt gggaatgaaa ttacgttttg gattgcgaaa
     8941 gaactgtaag atcaaggcca aaaacacaaa gccaataccc cataaactat aggtcagcca
     9001 agcggtattt ataaagtaat gtgccgacaa aaaaataacc gcgacaacga taaatgtaac
     9061 aacgataatg cgataaccct ctttatgaaa cataggcggt gatttgaagc aaacagtaaa
     9121 caaatggact gacgaaaata atgctatcca gacggtcgta tatgccgcca tggccaggca
     9181 atagggcacc actgtccttg acttgggcct ttcttttgaa ttttgattga actaaatctc
     9241 caagtgtccc aaaaacagag atcaataagg cgagaacaag ccacaaccga agactttgtc
     9301 catcgaaata ttgggccatg attcctgcgg cgatcaaggc gccggtcacg ccccctagcg
     9361 tcccttcgac agtctttttt ggcgaaatat gttctaagag tttatgtcga ccaaagttaa
     9421 cccccactaa gtaggccata ctgtcgttca cccaaattaa tataaagaca ccggcaatta
     9481 gattcatgtc ataatcgccg cttatttgag ggatgagccc catggtaatc acaccgatca
     9541 tgatgtaaaa caccattaaa atatacttgc gttctaagcg ttgatgcgat atgaattcga
     9601 gtaaattcag gattaaatag gtattcataa gcacgcctag aaccccaatg actaaatcca
     9661 tccattcggg aaaaatatcc tgatgaatgc ctacaaacaa gagcacaaaa atggcgtaag
     9721 gcaggaggct tttaatttgg actaaacgtt gaaactcaaa taaggtaagg agtccgaaac
     9781 aggcggtgag taataaataa tattgagcat cggcatacat agcgaagaga atcaacgtca
     9841 tgtagatcaa accagaaatg gtgcgcacta agagctctct catatttggt tggttagaat
     9901 gctttgctca cattgtaaaa gttcgcgctt aaaccgagtc tatgcgccgt tttacaaatt
     9961 ctccattaag agcaaatata agttttttgt gctacttccg taactcataa aatctttttc
    10021 gtcgcccgtt tcaaagtctt gaatggtggt aatattggtt ggtatggatt tattacttct
    10081 gctcttgatc aaatgaagtc cctcgctaat ggtttcaacg agttgacttg ttgtggcaaa
    10141 aatgatgatg ttggccggga gttcactgag ctttttctct tttatttgat tggagcaaag
    10201 aagaatagcc ccgttactgg ccactagaga ctcgcattgc gaaagcacaa aacaggattt
    10261 atccgattgc gaaaaattga ggttgtatcc atcaaacttc ttgattaagg cagaatccat
    10321 gcaaaatacc tcttgttcgt accaatcgtt ttctagtaga atattgtcaa aggcctctgc
    10381 gacttcttcc caattgaggc aataaagaaa tttgcctcct tttttactga agtttcgggt
    10441 gaatttttca tccgtaggca attcttgttc tgggaaatat ttactgcgct ccttagacgg
    10501 tgccttatcg tcgcttttgc ttttttcccc aagtagtctc ttgaatagac ccatcaataa
    10561 attttgaatt caaactgcct attcaaatat atgaaaactt aaagcaaaag tcttaggcat
    10621 caacataaag attgatgcct aaagacaaga ttaatttgga cgccgtaggg ggctgagtga
    10681 tcgctctann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn agtcttaggc
    10741 atcaacataa agattgatgc ctaaagacaa gattaatttg gacgccatag ggagctgaat
    10801 gatcgctctt attcctcttc tgttttatcg gggtcagagg gcgcaactga atttgtttct
    10861 gggcttgttt cctcctgagt tgattcggga tcattcaatg tgtggtcctc tttggtctta
    10921 gggggttcag caggctcggg aaccgcaaat ggacgcggcc caaaaatgcg ctcaaggctt
    10981 tctttgaaaa tcacctcttt ttctaataat tcggtagcca actcagtgag tttgtctttg
    11041 tgttcctcta ataaagcgat cgctctttga tactgagatt ccacaatttg tgaaatctct
    11101 tgatcaatca tttcagcggt tttctcactg tatggtttgc taaagttata gtcggtttgt
    11161 cccgaagaat cgtaaaaggt taagtttcct attttatcat ttaaaccata aatcgttacc
    11221 atagctcggg cttgtttggt aactttttcg aggtcactca aagcgcctgt ggatattttg
    11281 tcgaaaatta ctttttcagc tgcacggcct cccatggtgg cgcacatttc atcgagcatt
    11341 tggtccggac gaacgatcag tcgttcttct ggaagatacc aggcggcccc caaagattgt
    11401 ccacgaggga caatagtcac tttaactaag ggcgctgcgt gttccagcat ccaactcact
    11461 gtagcatgac cggcctcgtg aaaagcgatt gcctttttct cgtctgcagt gatgattttg
    11521 tttttctttt caagtccacc cacgatgcgg tctacagcat ctaggaaatc ttgtttgccc
    11581 accatcttct tgccttggcg tgccgcaatc aaagctgctt cgttacaaac attggcaata
    11641 tcagctccag agaatccggg cgtttgcttg gacaaaaagt ccatgtctac cgtgtcatct
    11701 tttttgatgg gacgcaggtg cacttcaaat atttctttgc gttcgcggac atcgggaagg
    11761 tccacataaa tttgacggtc aaaacgccca gcgcgcatca aggccttgtc cagcacatca
    11821 gcgcggttgg ttgcggccag tacaataaca ttggtattgg taccgaaacc atccatttcc
    11881 gtaagtaatt gattcagggt gttttcacgc tcatcattcg agcccgaaaa attactctta
    11941 ccccgcgcac gacctatggc atcaatttca tcgataaata ttatcgctgg agatttttct
    12001 ttggcttgtt taaaaagatc acgcaccctt gacgccccaa ccccgacgaa catctcgaca
    12061 aaatccgatc ctgacaaaga gaaaaatggc actttggcct caccggcgac ggcttttgcc
    12121 aataaggttt tacccgttcc tggtgaccca actaaaagcg ccccttttgg gattttacct
    12181 ccgagcgccg tatatttctc gggatgtttt aagaaatcta cgatctcttg aacttcttct
    12241 ttagcgcctt cgagtcccgc aacatcttta aaagtcgttt tcacgtctgt tttttcgtca
    12301 aacaagcggg ctttactctt gcctatatta aaaatttgac ctccagcgcc tccggcgcct
    12361 ccacccgaca tacggcgcat aataaacaac caaaccccaa taatcagggc aaaaaacagt
    12421 attgagggta aaaactcagc ccaaagattc gtttctgtat tccacacgac cttggtattg
    12481 aggccatttt ctgtcttaat ggtattgaga ctgttttcaa aattttgaag atcgccaaac
    12541 tcaaactgat aggccgcatc atttggcccg ggttttatga tccggtcttt aaatttgttg
    12601 gcgtgaatac tattgcttcg ggcttcttca gtaaggtaga cccgggcgag ttttcggttg
    12661 ataatttcta ctttttcgac atcaccattt ttcagataag attggaattc aacttggctc
    12721 gtacttatgg gatcggataa attcccgccg ccaaaaatat tgagtcccat aaacattaca
    12781 aaaattgcaa tgtaaatcca gtatgaattt attttgggtc gcttaagctc tggttttttt
    12841 tcttttgaca tttgccttta atgaatttaa taggcggttt ctatggatac acttttggca
    12901 tcaccccata acccctcgat atcgtaaaat tcgcgtatgt gtttttgaaa cacatgcacc
    12961 accacatgca catagtccat caagacccac tctgcattat cactgccttc aatgtgccaa
    13021 ggtttctctt tgagactctt gctgacgagt ttttgaactg aattgacgat ggcgttaact
    13081 tgggtgttcg aagtaccact gcagatgaca aaataatcac aaactgtgtt ttcaatgtcg
    13141 cgtaaatcca gaatttggat ttcttggccc ttgacctctt cgattccttt aattatttcc
    13201 gatacgattt ggtcagcgtc ggcttgattt ttctgcatta aatggtagtt tgtacaaatt
    13261 tattactttt ttacttctcg aaacgatttc aatccttagt ttaaccgcaa atttatttag
    13321 gtgatacaaa tcaaaattga tgccaccgag tctacaaatg actatttaaa attaatgttg
    13381 cgacaagggg tggtccagga cggtacggcc gtgcgtactt tgaatcaaac tcagggacgt
    13441 ggtcagcgcg gggcggattg gtattttgaa aaagataaaa gcctggcaat tagtgttttg
    13501 aagatatgga atgcctccga tcaacccagc ccatttcacc tgcaatgggt catcacccaa
    13561 agcgtctttg ccgtgttacg agaattggga acagcgacct ggcatataaa gtggcctaac
    13621 gacattatgg cagatggcaa gaaagtagcc ggccttttaa tcgagcatca gtttaaaggg
    13681 cgtctacaaa gttcgatctt tggcgtcgga gtgaatgtca acaatagcgc aataccccaa
    13741 tggccacacg cagcttctct tgctcaagtt ttaggaaaaa atacagatct cgatcgactt
    13801 gcccagggct tgattcaagc aataaatcaa gcctgtggga ccatacacca aaataatttt
    13861 ttgactgatt tggcagagtt taaccgttct ttatttcgca aagatatcct ctcaaaattt
    13921 gaagatgacc agcagcgggt cttcaccggg tgtattcaag gggttaccca atgcggcggg
    13981 cttttaataa aaaccgaaaa tggactcgaa acttatgctt cagggacagt gaagctcatc
    14041 ttaacggagt cttgaccact ctatattttc cctaagcctt cgcttaacgt gtctataaat
    14101 ttggtgatgg gccccttgat catcatcgcc atcatgggat tgaagtctcc tgcaaaatga
    14161 agttgcacca cacattgatt gggcccttct tgctggatat tcccggtaag ggtaaagggg
    14221 agcttatcac tttttgcccc aagaaccagt tgatttgggg cttgttctga ttttttttct
    14281 aaagcaattt cgggcatccc ttttagcgca aagagaaatc cgttttcact caggacttga
    14341 aatttatcaa tgttttcagg catgagactt tcaaaattac ggacctcact caaaaaattg
    14401 aaaacttctt ctgcggtctt gttgattgta atttttgatc cggtaatttc cataatgcgt
    14461 tttgatttgg gtcctgagaa aatagtggtt aaagcgacca agtacctggg ttttcgcgcc
    14521 attgggccaa aacatcagcc tgcttatttg taatgtagct cgatttttca gcctgaatga
    14581 gcaagtggct ataatcactc aaggtgttca gttgaactcc agcgttgtca aaattttctg
    14641 aagccacggg aaaaccatag gtaaaaatag cgaccattcc cttgactatg gcccccgatt
    14701 cacgcaaagc ttcgacagcc ttaagactgc tcccgcccgt agaaattaga tcttctacga
    14761 caaccacact ttgaccagat tcaatcaggc cttcaatttt attttgtcgt ccgtgcgact
    14821 tggcttcagg gcgcacatag caaaagggca agtttaaata atcggccact aaggcaccga
    14881 taccaatggc accagtagcc actcctgcga tgacgtcagg cttgccgtaa atttcctcaa
    14941 tttgattggc gatgtgttcc cgaataaaat tgcgaatcgc gggataagac aacgtaattc
    15001 tattgtcaca ataaatcgga gcgtgccaac ccgaagccca agtaaaaggg ttttgcggtt
    15061 gtaatttaat tgcattaatt tgcaacaata gttccgcagt cttctgcgct gtttccttgt
    15121 gtaatatcat ggtgcaaatg tataaagttt ttgtcaaaga ccgtcctatt attgtaagca
    15181 cagaacaatc tctaggagcg ccctaccaga cctttcccct gcgcactaca gacctaaagc
    15241 cgattattaa ggccttgaat aagggacgtc tcacacatgt gcatttgtat cataaaaatg
    15301 tcgagaaaat agaatggtat ttaaaaagga aactcccttt tgttattgct gcgggcggat
    15361 tggttaaaaa tgatcgcgat gaagtgttgt ttatttacag aaatgataaa tgggacctac
    15421 caaaggggca tgttgaggcg gatgaagccc tagaacaggc cgcgattcga gaggtcgaag
    15481 aggaaaccgg ggttcgtgat ttaaaaattt ctcaattttt aaaaaccacc taccacgtct
    15541 ttaaacgcaa tggaacctac aaactcaaag taacctactg gtatgagatg acaacggatt
    15601 atgcgggtcc tttaaaacct caaaaaaagg aaggcatcaa aaaggcaaaa tggaagacct
    15661 ttaagcaatc caaaaaggct ttgcgcaaga gttatgagaa cataaaacta gtcttccccg
    15721 agcactacct caccgaggag gcgaaccacg gggtagcgta ggtgttcttt ttcgtaatgt
    15781 acagagcgtt tgtgcagcca gtctaattga gcataagcat tttgagcaaa atcactgtgt
    15841 ttagatttat acgcctcaaa ttctgctttt aattctgggt tgcttttaag aatttcaagg
    15901 gctagatctt cccatacgta aggcgaaaaa ccttcttttt gttgcagtat agtatcaaag
    15961 aaattccaat tgaaaaatga atcaatggct tgaggttcca aggtttccag aatatagcgc
    16021 aagccgaatt gatccactgg gattaagtag tctccggcac taagccctat tcgttcaagg
    16081 cttgtcgata cttgggtgtt gtaatgaagg taatgtcctt cgtaggcgtt cgtgcgggtt
    16141 ttgaaatctt gtatatgata gacctcagcc tctgtaatga gctcttgttt taattcaaca
    16201 agcttaatgt ggttgctttt taaacgctca atgactcggt gataggttct aggaattcca
    16261 tagtagcgcg gaatgattac agaatccgta ggacgataag tatcaaaata aggaatattc
    16321 tttttgtagg gtgccgtgcg attgtactta agcctatttt gtcctgtaag ggcactgggc
    16381 agatattctg cggcgtagcc taggaattca atggggcggc tctgcgtggt gtcgatacgc
    16441 caatttaagg ggtatttgtc cagcgggtga tacaagtttt gattggcgac ataaccctgc
    16501 tcgagttcta aatggtatnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    16561 nnnaagttca gtgaaggttt gcagaagcgc gtaggttcct tccacccgtg acttgtaatc
    16621 tttgagcata tgggtttcga ccatcatccc caaggtattg aataaagtgg tgtagcccgt
    16681 cgaatagcgg gggtggtcaa taaattgctc aaatcctgtt tcagggctgc ggttaaatac
    16741 attgacgtag ggggtaatcg gccaggattg agcggcaagt gcttgttcaa gcgctggggt
    16801 aaattggttt tgtaaaaatt tgccttgggc tccggagagt ttgtcatgct gggtcattaa
    16861 atgggtcaaa acatactgat aatctgctcc gttactgaca tgagtgtcga caaaggccaa
    16921 agggcgcaac cattgaaata attgactaaa ggctaaggca tttctggtat cggcctttat
    16981 aaaatctcgg ttcagatcat agttttgagc gttcccacga aaaccataag cccgtggtcc
    17041 gttttgattt gttctgctaa aactgtttcg attgagtgcc ccaccaatat tgtaaaccgg
    17101 aataatggct acagcaaaat tttgaggacc tttttcagga ttcaaagccc aatcgcgcag
    17161 cagcatcatg ctggcatcaa tgccatcgct ttctcctgga tggattccgt tgtttattaa
    17221 aattacaggg aggtctggcg gcttgttttg ttcaatctta ggactgcctg caggctgata
    17281 aattaccaca tgtagtggtc ttccactgtc cgtagtgtcg ccttgatgta tgctgaggtt
    17341 gtcaaaatgg tcgcataatt cctgataata ttggataacc tcggggtaag ttcccgtttc
    17401 ttttccttga gagatttcaa aaaccgtacg ccactcattt tcacttttgg ttgggctttg
    17461 acagcctgta aaaagcccaa taaacgcaac aaaggtcgat aaaatgatca aagaaaaagg
    17521 agaagtatta cggtgcatag gtcagctatt tgttataaaa ataagcatta ttcactgcat
    17581 aggaccaaaa aaaaaggcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    17641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnggcgcc cgtttacggg cgccttttta
    17701 cattcaatcc atggaataag gtaacgtaga tactgctaaa aaagtagcgc taagcgttta
    17761 ataacagaat tcctctaacc ttaaccgttc atagaaataa ggaactcttc attgttgcgg
    17821 gtttgcttga tgcggtcatt aatgaattcc atcgcttcaa caggattcat atctgccaag
    17881 tacttgcgca tgacccacat acgttgaatg actttttcgt ctaagagcat gtcatcgcga
    17941 cgcgtgcttg aagaggtaag gtcgatggca ggaaaaatac gtcgattaga aatcttgcga
    18001 tcgagttgta attccatgtt acctgttcct ttaaattcct caaaaattac ttcgtccatt
    18061 ttagaacccg tctcggttag ggctgtggcg ataatactca acgagccacc attttcaatg
    18121 ttacgcgcgg ccccaaagaa tcgttttggt ttgtgcagcg cattcgcgtc gacccctcca
    18181 gagagaattt taccactggc tggttgtact gtgttataag cacgggccag tcgtgtaatt
    18241 gagtcgagaa ggatcactac atcgtgtccg cattcgacta atcgcttggc cttatcgatg
    18301 acgatattgg ctacacgaac gtgttcagag gcttctttat caaaggtaga ggcgaccacc
    18361 tcacctttaa cattgcgttg catatccgta acttcttccg gacgttcatc aatgagtaaa
    18421 ataatttgat agacctcagg gtgattggcc gcaatggcat tggcaatttc ctttaacagc
    18481 atggttttac ccgtttttgg ctgagccaca atcattcccc tttgtccttt accgataggg
    18541 gcaaacaaat caattatcct ggtggaaact gtgctttgtt tgtctgcaag gttaaatttt
    18601 tcattcggaa ataggggggt caaatgttca aacgaaacac ggtcacgcac tacatttgga
    18661 ctgagtccat ttattttatt gaccttaatt aaagggaaat atttttcccc ctcttttggc
    18721 ggtcttactt cgcccaggac ggtatctcct gttttgagac caaataaacg aatttggctt
    18781 tgggaaacat aaatatcgtc gggagaagac aagtagtgat aatcactcga acgcaaaaat
    18841 ccatagccat cttgcatgat gtctaagacc ccttcactct ctataatccc atcgaattcg
    18901 taatccggtt ctctgtaacg atttctggta tcgcgattgc cgttgttttt gtcttgatga
    18961 tcaggacgtt tgttcttgtt atgatttccc tggcgggggt tattgttgtt tttgttgtgg
    19021 ttgttgtctt ttgacacgcc gtttccactg tcttgttcat tacctgattt ttggttttga
    19081 tcgttctgtg gatttggatt ttggtttgga ttttgatttt gattttgacg ttgtccttgt
    19141 ccttgtcctt gtccttgtcc ttgctgttga cgggcgtgtt tgggcttttc gacctcctta
    19201 tcctcttttg cggctccatt tggcttgttg cgctcttgcg gcgctttttg atgccgcggt
    19261 ttgcgttctt ggtcgggccg attattttgt cgtctttgcc cattttcggg ggccttctca
    19321 ttggttgaat catcgggctt gttttgacca gattcttcca cggcagcagg aattagtttt
    19381 tggaccgcag ttgggttagc cgcttgatag tccaaaattt gataaactaa gtctaatttt
    19441 tttaaggttc ggtattttgg cacaccgagt tcttttgcta aatcctgaag gtcaggcagc
    19501 tttttttctt ttaattcaga aatctctaac atgtaatatt taattcgtga aaatgtatca
    19561 gtggattgtg ataaaactga tcgataaaat ttgatgaagt ctcagtcccc taacgatgaa
    19621 ggggttactt gtagtggggc aatgatacaa cattattttg aaatcttgca ggattttttt
    19681 cgaaaagaaa gtttattttt gtgttcgcaa tttcaacaat aaccatgatt caacgcattc
    19741 aaaccctgta tttattgggc gctttagccg ccgacgcagg tttttatttc gttggcaaat
    19801 tcgatgcggc agcgacgaca gaccaatggt cgttaggcgc cattgaccga acgctgcagc
    19861 tcattgtcat ggtccttatt gtttgggcta tatttaaatt taaacaacgc ttgcatcaat
    19921 ttgtgcttaa tcgtttgtct atcatattaa actttgtatt agtaggcgtt ttcgcttatc
    19981 agtcgctaaa cttacctgga gaggcttcgg tttcgcagaa gggtattggg gtgctcnnnn
    20041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    20101 nnnnnnnnnn nnnnnnnnag aagggtattg gagtgctcct tcctatcatt tctatcgttt
    20161 ttttagtgct ggccaataag gccatcaaaa gggatgagga cctcgtaaaa tctgtcgatc
    20221 gattgcgcta acccctttag tatatttatt agtgcgaaaa ccctcaaaac atgccatttt
    20281 gagggttttt tttatgagac cataagtgga gcgcctacta gcgcttgtat tctaaaactt
    20341 cgaggtcctt tatttggccc tgttctattt taaaacgaag catcgttcgc gctttatgaa
    20401 atccgtgacg cccaatggct ccaggattca tgtgtaaatg gccgtattta ggatcacgca
    20461 tcacctttaa aatatgagaa tgcccacaga tcaccagatt tggctgatgt tgttccaaag
    20521 cttttcttgt ggtggcgtta tagcggccgg ggtagccggc gatatgcgtc atataaacgc
    20581 ggatcccttc acaatcaaaa atcaactctt tagggaattc ggcgcgtatc gtggcctggt
    20641 caatatttcc ataaaccgct tttaatgggg cgctttgttt cagggcatcg gtcacgctta
    20701 tggcgccaat atctccagcg tgccagacct ggtccacctc gctagcccgt ttaaggacga
    20761 tatcatcgat atcagaatga gtg
//
LOCUS       DPUP01000106            7803 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6619,
            whole genome shotgun sequence.
ACCESSION   DPUP01000106 DPUP01000000
VERSION     DPUP01000106.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7803)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7803)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7803
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            231..1427
                     /locus_tag="DHV98_03630"
     CDS             231..1427
                     /locus_tag="DHV98_03630"
                     /inference="COORDINATES: protein motif:HMM:PF00589.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCK05459.1"
                     /translation="MTEHIVLHTVSGRERLKPRSEPYWIPLTRGCHLGYRVNAGEGAW
                     VARYTHRGRVAKKRQAKTLGPLGYLSGKDQYGEAKRLAEAWFDHIRFGGKSKSGTLAS
                     ACESYAAFIEKTKGRKAAHDIKRRLNQYVLNDEKFANTELQDLSPHIVKQWREKLADM
                     LINVGKNKGKLRTAETLNRDMTCLRACLNFALEEGLVTSDTAWRKALKPVTRKQSTEV
                     GRQREVYLSFAEREALLQALQTIEPSLVPLVRSMCLLPLRPGACANLYVGDFDGKRLI
                     VRSDKAHAGRVLFLPESTAKFFRTHCQRKLPSAPIFSRLDGSQWSKDSWKKPIRKAAT
                     AANLSTDTVAYTLRHSVITDLVDAGVPVTQIALLSGTSVRMIEQNYAKLTSDMSVRAL
                     GALVSE"
     gene            1522..1902
                     /locus_tag="DHV98_03635"
     CDS             1522..1902
                     /locus_tag="DHV98_03635"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05460.1"
                     /translation="MNESVRSVISSYEITIGNPNVDIDIITAQLVEALFYYREFLSIK
                     FVRQGVKKPGPKQKIAEQVLIRDIREILSKQGIETLQYWRNGRAAKNSLHEFISDLCR
                     NSGVNPRFNASARSHSSKSISFIT"
     gene            1987..2229
                     /locus_tag="DHV98_03640"
     CDS             1987..2229
                     /locus_tag="DHV98_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018123258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05461.1"
                     /translation="MDNELTFWTIKDVLKGQGISRSLWYDQVRMGVAPMPVKTGERRV
                     AWLKTEVLAYRQKLVEDRDQLLARSGYKADSSISKR"
     gene            2325..4826
                     /locus_tag="DHV98_03645"
     CDS             2325..4826
                     /locus_tag="DHV98_03645"
                     /inference="COORDINATES: protein motif:HMM:TIGR01613"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05462.1"
                     /translation="MHSLIDNQVQRAANIDEDGMLEFLRVITPGEGVLFAATPKLAGS
                     DKSKRGWEHIACANYEELAKKCAEFSLRGMQSYYAMSSYKHASYYCDIKQYRRSRTQA
                     NVKLVRSNWIDIDYGKGKEYLTIEEALNAFDAWLEKANLPLPTFLVSSGNGLHIYWVF
                     TTDISYEDWEPIARLFAKLQKQYALKSDNISGNAACVLRPIGTLNYKDPANPKPVKLI
                     RQGDLQDFKKWGEMIQSAVTLGPLRYSSIANSNSSLINALLGSNFADYPPSDADLIAG
                     ACQFFKDMRDTLGANQSEPQWFSALGVLAKTSNGPEIAQKWSSGHSDYSPIATQQKLD
                     QWRGIGPTTCERIRHESISCNGCKQTCKSPIQLGYRNELISPEDPGLTNEQKLAALFE
                     MPAGDILAARYFAHLNEGKNIFVPHYREWFQWNGNYWKRDDHRGMAVAKNTSDQFLKS
                     TSELFKSDPDRFKPYINFACQLRNKGRLDNMLALASSEESISVDSSRLDNNVLLLGVP
                     NGIVDLRLAKLLSPSPEHYTTKQAGCSFDENADCPGWLAFLDAVFQGDQSIIKFIQLA
                     LGYTLTGSNTEELIFILYGNGANGKSVFGNVVAHILGSYGISGDSSVLVNQKPDMGPS
                     VEMARYTGARYVSFNETAAGNKLDARAVKVLAGREPIVARQLYQKAFEFIPQFTPWLR
                     TNHKPIVTDTDDGIWRRLVLIPCNASFTGANNDPNIERRLLSEDAGILRWMVEGAKLW
                     CSSGLKVPSIISNEVKSYRSDSDLFGQFLADKTKQKVGAKTDQSLVWLSFTSWCHCEN
                     IHQGTKASFTRRLAEAGYTAVKSNGKRYYQGLELA"
     gene            4976..5362
                     /locus_tag="DHV98_03650"
     CDS             4976..5362
                     /locus_tag="DHV98_03650"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05463.1"
                     /translation="MDTWLDQIKRECEIRPTANTHLAELKQKVTAHRRGRSEAHRRQM
                     AYIESFVPVEQQIRQWRNGLTQAVRHRPFSTMELVGQLRGRYKQRPAASAVATALRQL
                     GFVQYRDWSKNGQGCRLWKVVDQRGT"
     gene            5554..5943
                     /locus_tag="DHV98_03655"
     CDS             5554..5943
                     /locus_tag="DHV98_03655"
                     /inference="COORDINATES: protein motif:HMM:PF14248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05464.1"
                     /translation="MERRMEILNIAGAGMTMVMGCLGLFFPQRAAEFTGLKAVTVPGR
                     SEFRSTFGGLFLLAGLVPLITLEPAAFLTIGLGWAGAASGRVVSILADNANDPKNWIA
                     VLFEASFAALLLAGRPIALLLEKTGQL"
     gene            complement(5970..6257)
                     /locus_tag="DHV98_03660"
     CDS             complement(5970..6257)
                     /locus_tag="DHV98_03660"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05465.1"
                     /translation="MVPDCLQSQQTQCEPLPSWPRGVRPAFGVALHRALGACCLCHAW
                     RHQFSPAGLGLGVLAFFGGMMFLTIYLLIVSLRTKGDVGALLLGEARAGQR"
     gene            6596..6883
                     /locus_tag="DHV98_03665"
     CDS             6596..6883
                     /locus_tag="DHV98_03665"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05466.1"
                     /translation="MTHSNIHTLAVFQKSNGFIIFAITDCTDSNQISADLEGQYKGGN
                     LLRTFRFDAPAQETLFLVRLASQAIIKAEFPSTELQLELIDNAFSIQAIAA"
     gene            6928..7425
                     /locus_tag="DHV98_03670"
     CDS             6928..7425
                     /locus_tag="DHV98_03670"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05467.1"
                     /translation="MFVSKKAQETSIQKEVRGPVEVEKIFDKYIRMTSEKVAKSLSDA
                     KGRYEQGHAYKDPKPSLNWKVVKQADSVSEEIVEMWMKIGIKKVPITATGETEDRQPA
                     TAVVGILQEWLDMLEGMKADPQSEAAQEFHRIAIEQAKPKTLPKAEDKTGWKYDSKID
                     SYIAI"
BASE COUNT         2223 a         1741 c         1897 g         1942 t
ORIGIN      
        1 cgacccccac catgtcaagg tggggtaaaa agttatttca gcttgtatct cgttcagaat
       61 ctttcccagt taaatttcca atatattatc taaattattg attttattgt ctttgaataa
      121 atatttgact agtcagtcag ctgattcacg gttccttgaa agtccggaat aatccagtaa
      181 gatatgtgta aagttatcgt aaaaaaatcg caaaataggc gggtaatgtt atgacggagc
      241 acatagtgct acacactgta tcaggccggg agagattgaa acctcgaagt gaaccgtatt
      301 ggattccgtt aacgcgaggc tgtcatttag gttaccgagt gaacgctgga gaaggggctt
      361 gggtggcacg ctatacgcac agaggccgcg ttgctaaaaa gcgtcaagca aagactctcg
      421 gccctttggg ttatctctca gggaaagatc aatacggaga ggctaaacgt ttagcggaag
      481 cttggttcga ccatattcga ttcgggggga aaagcaaatc tgggacattg gcgtctgctt
      541 gcgagagtta tgcagctttc atagaaaaaa ccaaaggcag gaaagccgct cacgatatca
      601 aacggcgact aaatcaatat gttcttaacg atgaaaaatt cgcaaatact gagttgcaag
      661 acttatcgcc gcatatcgta aaacagtggc gggaaaagct cgctgatatg cttatcaacg
      721 ttgggaaaaa caaggggaag ttgcgaaccg ccgaaacctt aaaccgtgat atgacatgtt
      781 taagggcttg cctaaatttt gctctagagg aagggcttgt cacaagtgat acggcatggc
      841 gaaaggcact gaaaccagtc acacgcaagc agtctacgga agtgggacgc caacgtgagg
      901 tgtatctctc atttgccgag cgtgaagcat tactgcaggc tttacaaaca attgaaccat
      961 cacttgtgcc tcttgtgagg tcaatgtgcc ttctccccct gagaccgggt gcatgcgcaa
     1021 atctgtatgt aggcgatttt gatggaaaaa gactgattgt aaggtctgat aaagcgcacg
     1081 cagggcgcgt actgtttctt ccggagtcaa cggcgaaatt tttcaggaca cattgccaaa
     1141 gaaaattacc ctcggcgccg attttttcaa gattagatgg atcacagtgg agcaaagatt
     1201 catggaagaa gccaatacga aaagctgcca cggcagccaa cctatcaact gatactgtag
     1261 cttacactct gcgtcattcg gtaattactg atctagtaga tgcaggtgtg cccgttaccc
     1321 agattgctct gctttcaggt acctcagtga gaatgattga gcagaactat gcaaagctaa
     1381 catctgatat gtcggttcgc gcactggggg ctctagttag tgagtaagaa acctgttggc
     1441 agacctcggc aatattcgga tcccgagatt gagcttggtg aaacgttgac gtctattgta
     1501 gatctggaaa gtcgagaaat tatgaacgaa tcagtgcgta gtgttatttc gtcctacgag
     1561 atcacaattg ggaatccaaa tgttgatatt gatatcatta cggctcagtt ggttgaagcc
     1621 ttgttctact accgagagtt tctatcgatc aagtttgtca ggcaaggggt gaaaaaacca
     1681 ggtccgaaac aaaagatcgc ggaacaggtg ctgattcgag atattagaga aatcctctca
     1741 aaacagggaa tagaaacgct gcaatattgg cgcaatggca gggccgcgaa gaattctttg
     1801 cacgaattta tatcagattt gtgcagaaat tctggcgtca atccgcgctt caatgcctct
     1861 gcgcgttctc atagttcaaa atccataagt tttatcactt aagagtaatt aatctctaat
     1921 tcgtgtgacc accagaaaga cctctttgga tattctccta ttgacagcaa atatgggagt
     1981 tgggttatgg acaacgagct tacgttttgg acgattaaag atgttcttaa aggccaaggt
     2041 attagccgat cactttggta tgaccaagtt cgcatgggag tcgcgcccat gcctgttaaa
     2101 actggtgagc gtcgcgttgc ttggttgaaa actgaggttt tggcgtatcg tcaaaagcta
     2161 gttgaagacc gagatcaatt actcgctcga agtggttaca aggctgattc atcgatcagt
     2221 aaacggtgag gtcgtgacag cgtccgcgac ctaaatcatc cagctgtttg aattatggtc
     2281 gtatttttcg tttatgtcat gatcttctat gtgaggagat ctatatgcat agtttgatag
     2341 ataatcaagt tcaacgggct gccaatattg atgaggacgg tatgctcgag tttttaagag
     2401 tgattacacc gggggagggc gtactctttg cagctacgcc aaaattagca ggtagcgata
     2461 agtctaagcg tggttgggag cacatagcat gcgctaatta tgaagaactc gccaagaaat
     2521 gcgcggaatt tagtttgcgt ggcatgcaat catattacgc gatgtcatcc tacaaacatg
     2581 cttcttacta ttgcgatatc aagcagtata gaagatcccg aacacaagca aatgttaagc
     2641 tggttcgctc gaattggatc gacatcgatt atggcaaagg taaagagtat ttaacgatag
     2701 aagaggcgct aaatgctttc gatgcatggc ttgaaaaagc aaaccttcca ctaccaactt
     2761 ttctcgtcag ctcaggcaat ggactccata tttactgggt attcacaact gatatttcat
     2821 acgaggattg ggagcctata gctaggttat ttgcaaagtt gcaaaagcaa tatgcactaa
     2881 agtcagacaa tatttcgggt aacgccgcct gtgttctgcg ccctatcggt acgcttaatt
     2941 acaaagatcc agctaacccg aaaccagtaa agttaattcg tcaaggtgat ctgcaggatt
     3001 ttaaaaagtg gggggagatg attcagagtg ctgtgacgct aggaccactt cgttattcat
     3061 cgatcgcaaa ctcaaactca tctttgataa acgctttact cggctccaat tttgctgact
     3121 atccaccatc tgatgctgac ctgatagcag gtgcctgcca gttttttaag gatatgcgag
     3181 atacactggg ggcaaaccag tctgagcctc agtggttttc tgcacttggc gtcctggcca
     3241 aaacgtcgaa tggccctgaa atcgcacaaa aatggtcctc cgggcattct gactattcac
     3301 ctatcgcaac ccaacaaaaa cttgatcagt ggagaggtat tggcccgact acgtgcgaac
     3361 gaatcaggca tgaaagcatc tcttgcaatg gatgcaagca aacatgcaag agcccgattc
     3421 aacttggtta cagaaacgaa ttaatcagcc ctgaagatcc gggcttaact aacgagcaga
     3481 agctagccgc attattcgaa atgcccgccg gtgatattct agcagcacga tattttgctc
     3541 atctcaatga aggcaaaaat atctttgtgc cgcactaccg tgagtggttt caatggaatg
     3601 gcaattactg gaagcgagat gatcatcgtg gcatggcagt cgcaaaaaat accagcgacc
     3661 aattcctgaa atctacgtcc gagcttttta aaagtgaccc tgatcgcttc aagccatata
     3721 ttaatttcgc atgccaacta agaaacaagg ggcgactgga caatatgctt gcacttgctt
     3781 caagtgagga atcgatatca gtggattcgt cccgcctaga taacaacgta ttactactgg
     3841 gggtaccaaa tgggatagtt gatttacggc tcgctaagct tctaagccct tcacctgagc
     3901 attatacaac caagcaagca ggatgctcat tcgacgaaaa cgcagactgc cccggctggc
     3961 tagcgtttct tgatgcagtt tttcaaggtg accaatctat catcaagttt atccagttag
     4021 cccttggtta cacattgacg ggatcaaaca ctgaagagct tatattcata ctttatggaa
     4081 acggggcaaa tggtaagtca gtgttcggta atgtcgtcgc acatatccta ggaagttacg
     4141 gtattagcgg tgatagctct gtcctcgtaa accaaaagcc agatatgggt ccatctgttg
     4201 agatggctag gtacaccggt gcaaggtacg tttcttttaa cgaaactgca gctggcaata
     4261 agttggatgc gcgagctgta aaagtccttg ctggacgaga acctattgtc gcacgtcagc
     4321 tttaccaaaa agcctttgaa tttattccac aatttactcc atggctcaga accaatcata
     4381 agccgatcgt tacggatact gacgatggta tttggcgaag gcttgtattg atcccatgca
     4441 acgcatcgtt tactggcgca aacaacgatc caaatattga gcgtcgcctt ttgagcgagg
     4501 atgcaggcat actcagatgg atggtcgaag gtgcaaaact ttggtgttca tctgggctaa
     4561 aggtgccgtc aatcatcagc aatgaggtta aaagctaccg ctctgactcg gacctatttg
     4621 gccaattctt agccgataaa actaaacaaa aagtaggggc aaagacggat cagtccttag
     4681 tttggttaag tttcacgtcg tggtgtcatt gtgaaaatat tcatcagggt actaaggcct
     4741 ctttcacgag gcgattggca gaagctggct atacggcggt caaaagtaac ggtaagcgct
     4801 attaccaagg cttagaactg gcgtagggcg tgtaagggcg agtttacgtt gtatttcctt
     4861 tgtatttaca ttttggtttg tcattggagt tcttaaaaat gcacttaaac cggccctctc
     4921 tggccctcga atagaccgcc accgccaacg atgtaacttt tcatggagat ttaacgtgga
     4981 cacatggctt gatcagatca aacgcgagtg tgaaattcga cctactgcaa acacgcacct
     5041 tgctgagctt aagcaaaaag ttacagcaca tcgaagagga agaagcgagg cgcatcgtag
     5101 acaaatggca tatatcgagt ccttcgtacc tgtagaacaa caaatacggc agtggcgcaa
     5161 cggtttaact caggctgtaa ggcaccgtcc cttttccacg atggagcttg tcggtcaatt
     5221 gcgagggaga tataaacaac gcccagcggc ctctgcagtt gctactgcgt taagacaatt
     5281 aggtttcgtt cagtatcgag actggtcgaa aaacgggcaa ggctgccgcc tgtggaaggt
     5341 agtcgatcaa agaggtacgt aatgttaata gttctgaaaa atatgaggtt tggcaggtca
     5401 aatcagttag gcgtgaacta cccgtggact ttggagaaaa aggcctttat tcttcctata
     5461 cccttgagta tcgggaacat ccgggctggc actaacatgt gctaactgta ctttctcccc
     5521 tttgactgcg ggaagtacgc cgcatcagaa gacgtggagc gacgcatgga gattctcaac
     5581 atcgctgggg cgggcatgac gatggtcatg ggctgccttg gcctcttctt cccgcagcgc
     5641 gcggccgaat tcacaggcct gaaagcggtg accgtccccg ggcgttccga gttccggtca
     5701 acgtttgggg gattgttcct gctggccggg cttgtgccgc tgatcactct tgagcccgcc
     5761 gcattcctga cgattggtct cggatgggcc ggcgctgcat cgggacgtgt tgtctcgatc
     5821 cttgcagata atgcgaacga tccgaagaac tggatcgccg tcctcttcga ggcgagcttc
     5881 gcggcgctgc ttctcgcggg ccgcccgatc gccttgcttc tggaaaagac ggggcagctt
     5941 tgaagtgagg tggcgataac tgtgcctgct cagcgctgac ccgcacgcgc ttcaccgagc
     6001 agcaatgcgc cgacatctcc tttcgtcctc aggctgacga tcagaagata gatcgtcaga
     6061 aacatcatcc cgccgaagaa ggcgagcacg ccgaggccaa gtcctgccgg cgagaactga
     6121 tggcgccagg cgtggcagag gcagcaagcc ccaagcgccc gatgaagcgc aacaccaaac
     6181 gccggccgaa caccgcgcgg ccatgacggg agaggctcac actgcgtctg ctgagattga
     6241 agacagtccg gtaccattac ctcttctccc aacaactcga aaaaaattct tccttcgaca
     6301 ggggtagcat cggaaaagaa ggattcatag aagactatat aactgacaaa gaagctattt
     6361 tctctaaatt aataatttcg aaaataagat aaaaaagata aaaaaattag ttgacaagaa
     6421 ggcaacttta atagaaaata gtctcataaa gttgaggcaa gaagccaaaa ctataaaaaa
     6481 gctggcgaag aaaccaccag ggtaaagaag acaaactccg gtcgcagaag ataaaactgc
     6541 gtctaacaag tcaaacctaa caaacttaat gttgacttaa acggagataa tcctcatgac
     6601 acactcaaat attcacaccc tagctgtatt ccaaaaatcg aatggtttta tcattttcgc
     6661 aataactgat tgcactgatt caaaccaaat atctgcagac ctggagggcc aatataaagg
     6721 cggcaacctg ctgcggactt tccgctttga tgcaccggcc caggaaactt tgttcctagt
     6781 gcggctcgca tctcaagcaa tcatcaaagc agagttccca tccacggaat tgcaactcga
     6841 gctaatcgac aatgcatttt cgatccaagc catcgcggca taaccaattt caccaagaca
     6901 aaattcagat aaattcagga gttaaaaatg ttcgtatcta aaaaagcgca agaaacctca
     6961 atccaaaagg aagtccgtgg cccagttgaa gtcgagaaga tcttcgacaa atacatccgc
     7021 atgacaagcg agaaggtcgc aaagtcattg tcagatgcga agggacggta tgagcaaggc
     7081 catgcttata aagaccccaa gccttctctt aactggaagg tcgtcaagca agctgacagc
     7141 gtgtccgaag agatcgttga aatgtggatg aaaattggca ttaagaaggt tcccatcacc
     7201 gcgaccggcg agacggaaga tcgtcagcca gcaacagctg tggtgggtat tcttcaagag
     7261 tggctcgata tgcttgaagg aatgaaagct gaccctcagt cagaagctgc tcaagagttc
     7321 catcgaattg ccattgagca agccaagccg aagactttgc caaaagcaga ggataagact
     7381 ggatggaagt atgactcgaa aatcgattct tatatcgcca tctaaaagcg ggtcatttag
     7441 atgacttgcg tcgggtatat tgggcgggct gcaaaaccaa aatccgtata gttcgaatcg
     7501 gcacccgaac gcgaatcttg ccgagtgtca ccggtaatct ccttgtgctt cacgaacaca
     7561 tgtccctacc caaataagac cttttcaatt gccactgcgg ttttgcgtct tatctaccgc
     7621 cgcatatata tatccgaagc cccaagtctt gtgaataata atcttacccg tggtcatcag
     7681 gtgccgctat ggcgataaca gaacaaacaa aagacgctgt gcgccgattg gcttgtttgc
     7741 cttgggtgtt tttgttggtt cgctggtttg gcagttcggc ctagtttttg cagccaccat
     7801 tac
//
LOCUS       DPUP01000107            7112 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_28146,
            whole genome shotgun sequence.
ACCESSION   DPUP01000107 DPUP01000000
VERSION     DPUP01000107.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7112)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7112)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7112
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>678
                     /locus_tag="DHV98_03675"
     CDS             <1..>678
                     /locus_tag="DHV98_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HCK05468.1"
                     /translation="VNALEVQNDLIAVFESAEAKTYGGNNQLKISTKYKVEETGAEVD
                     VEIEQMLFEAVKSYLPEGMDYEEFVADQENKIAGRMEYYKVSPTIADDIKSSSFLAVL
                     GSLVVVFLYILLRFRRWQFSLGAVAAVFHDVLIVLGVFSLTYQFMPFNMEIDQSFIAA
                     ILTVIGYSLNDTVVVFDRIREFFNEHSSWKMNKIIDSALNSTLSRTLNTSLTTLIVLF
                     TIRSEER"
     assembly_gap    679..762
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <763..904
                     /locus_tag="DHV98_03680"
     CDS             <763..904
                     /locus_tag="DHV98_03680"
                     /inference="COORDINATES: protein motif:HMM:PF02355.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05469.1"
                     /translation="LIFALIVGVMVGTYSSLFIATPVFFDTVKKRGIDLSDKQEEEDQ
                     EK"
     gene            complement(975..1436)
                     /locus_tag="DHV98_03685"
     CDS             complement(975..1436)
                     /locus_tag="DHV98_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013621861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05470.1"
                     /translation="MALVGITGCINEKNEKVLTREIPFTKEGTLSLVRSTNDSLIATL
                     DIEIAEGEYETATGLMYRNSMEENQAMLFIFDRESPLSFYMKNTQFPIDIIYLDKDLK
                     IVEVYRDAKPFDPTPLPSRRPAKYVLEVNAGLVARWKLLPVDRAEFSRINN"
     gene            complement(1472..2302)
                     /gene="lgt"
                     /locus_tag="DHV98_03690"
     CDS             complement(1472..2302)
                     /gene="lgt"
                     /locus_tag="DHV98_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012024332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCK05471.1"
                     /translation="MLPALGIYWAPSEGINLGFYTIQYYSLMFVLAFSLGWYLMKKIF
                     IREGVALEKLDSLFMYMVLAILIGARLGHVIFYQPELFHQDFFSVFLPFKFKGGFAFT
                     GFRGLASHGAAIGIIIAMYLYQKNVLKESLLWLFDRIVIPVASGAVLVRIGNFMNSEI
                     VGHPTGTDFGVIFANNGEDFARHPAQLYESFGYVFVFVILYWTYWYTQKRLQQGYLFG
                     LFLVLLWSVRFIVEFYKKSQGGFETSLGNLLSTGQWLSIPFIIAGVILLLRAKKNSAV
                     "
     gene            complement(2352..2579)
                     /locus_tag="DHV98_03695"
     CDS             complement(2352..2579)
                     /locus_tag="DHV98_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014164430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HCK05472.1"
                     /translation="MSLLSLLAKPLILLIKFYQNVISPFTPSTCRFNPTCSHYSIEAL
                     KKHGALHGSWLAIKRIARCHPWGGSGHDPVP"
     gene            complement(2589..4079)
                     /locus_tag="DHV98_03700"
     CDS             complement(2589..4079)
                     /locus_tag="DHV98_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HCK05473.1"
                     /translation="MTLPKPEHRKLSIYNSLTKEKELFTPLVPEFVGMYVCGPTVYNY
                     VHLGNCRTFLSFDLIYRYFKHLGYKVRYVRNITDAGHLENDADSGEDRIAKKARIEAI
                     EPMEVVQRYTVDFHEIMSAFNALPPDIEPTATGHIIEQIQIIQKILGAGYAYEKNGSV
                     YFDVLKFNEDQQYGKLSGRKIEDMIANTRELTAQSEKKNPQDFALWKKAEPQHIMRWP
                     SPWGDGFPGWHLECTAMSTKYLGETFDVHGGGMDLKFPHHECEIAQAEACNKTAPVRY
                     WMHANMLTLNGKKMAKSTGNNILPRELFSGNNAIMSQPIRPAVAKFFMYQAHYRSILD
                     FSDQAILASEKGYQRLMEAVNTLESIEASDSSDFAIAPWVDSCYAAMNDDFNSPILIA
                     QLFEATKWINQLNEGGAKITQEDLELLRATIHSFVYDVLGLPKEMEGQNNGQQQLEAA
                     VNLLIDLRNQARANKDFATSDAIRDRLQEAGIQLKDGKEGSSFSLR"
     gene            complement(4100..4777)
                     /locus_tag="DHV98_03705"
     CDS             complement(4100..4777)
                     /locus_tag="DHV98_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008991534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HCK05474.1"
                     /translation="MDLEKQLQEIEAFGNDHVGTSSRTPLRPDAFEIGDQEKMDRIEK
                     DVQNILQTLGMDLTDDSLKGTPKRVAKMFVKEIFAGLHPDNKPKASTFENKYKYGEML
                     VEKNITLYSTCEHHLLPIVGRAHIAYISNGTVVGLSKMNRVVDYFAKRPQVQERLTMQ
                     IVQELQKILNTDDVACVIDAKHLCVNSRGIRDIDSSTVTSEFGGQFKNHKVKREFLDY
                     IKLNTSF"
     gene            4967..>5839
                     /locus_tag="DHV98_03710"
     CDS             4967..>5839
                     /locus_tag="DHV98_03710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05475.1"
                     /translation="MLIGQVPLTRVVPQIVGKYDFTAIGNTLNVSANPNPCELLPQSS
                     ATLNLQPNETFFQAHMYWSASGPADDTVSLNGNTVIAQRTYSINNNFGLYNTHYADVT
                     NLVGAIGNGVYTFSDYLGTIPCGNSTNYGGWMIYIIFGEPTLPQNQISIFEGFDYVSG
                     SNPNLDITLTGIDVATDDLAKIGFLAWEGDASIAVQETLTINGNLIDNPPLNPGDNAF
                     NGTNSYTNSSTLWNMDLDVYDLQGIVQPGDTQIDIQLTSGQDLVLVNNVITSVNSEIP
                     DAACTIDDLDVVCDN"
     assembly_gap    5840..6011
                     /estimated_length=172
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6012..>6622
                     /locus_tag="DHV98_03715"
     CDS             <6012..>6622
                     /locus_tag="DHV98_03715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05476.1"
                     /translation="VVCDNGQNLFIDYTVYNLPSTSPLSAGTRVDFYWQNVGGGPLNY
                     LDTVFTVNDIPIGGQESGNTILSIVGTPPQFDLVMIVDPANSILEIDETNNENRLFID
                     TTQPFSIGPDVESCAGLTVTLDTGVSSPDFTWQWYKDGNIIPGATNPSITVGLNGVYT
                     VEGFEGPCFITDDIEVTFNLPPDAFPPADLFLCDDGATAGSFDL"
     assembly_gap    6623..6715
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6716..>7112
                     /locus_tag="DHV98_03720"
     CDS             <6716..>7112
                     /locus_tag="DHV98_03720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05477.1"
                     /translation="TENDDDLLGGQDPALFFVKYYETLQDAQDDTNVILVPTGYFISQ
                     PSPQTIYARVESPEGCFAIDTFKIFFTRVQAGQPEGIEVCDNDGDGFTAIDLPLTFDS
                     EVLDGEPAADYLITYHNDPVEATTGANALP"
BASE COUNT         1903 a         1370 c         1450 g         2040 t
ORIGIN      
        1 atgtaaacgc tttagaggtt caaaacgatt tgatcgctgt attcgaaagt gcagaagcaa
       61 agacttatgg agggaataat cagctgaaaa tttcaaccaa atataaagtt gaagaaactg
      121 gagctgaagt cgatgttgaa attgagcaga tgttattcga ggccgtgaaa tcttacttgc
      181 cagaaggtat ggattatgaa gaattcgtgg ctgaccaaga gaataagatt gcgggtagaa
      241 tggagtacta caaggtttca ccaacaatcg cggacgatat taaatcgtct tcatttttgg
      301 cagttcttgg atcgttagtg gttgtattct tgtatatatt gctgcgtttt agaagatggc
      361 aatttagtct gggggccgtt gctgcagtat tccacgatgt gttgatcgtg ctgggtgtgt
      421 tctcattaac ctatcagttc atgccattta atatggaaat cgatcagtca tttattgcgg
      481 cgattttgac cgtaattgga tactccttga acgataccgt ggttgttttt gaccgaattc
      541 gtgagttttt caacgaacac agcagttgga aaatgaataa aataatcgac agtgccctta
      601 acagcacttt gagtagaaca ttaaatacgt cattgaccac attgattgta ttattcacta
      661 ttagatcgga agagcgtcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnattgattt ttgccttaat
      781 cgttggtgta atggtcggta cctactcgtc tttgttcatt gcaacgcctg tcttttttga
      841 tacagtcaaa aaacgcggta ttgacttgag tgacaaacaa gaggaagaag atcaagagaa
      901 atagagcata aactcagtat acaaataata gtgtatagag cataactaaa aaaccccgca
      961 gaatgcgggg ttttttagtt atttatgcgt gaaaactctg cccggtctac agggagtaat
     1021 ttccagcggg cgactaatcc agcattcact tcaagaacgt attttgctgg acgccttgaa
     1081 ggcagtgggg tagggtcaaa tggcttggca tcacgataaa cctctacaat ttttaagtct
     1141 ttatccaggt atatgatgtc tatgggaaat tgagtgtttt tcatgtaaaa actcagcggt
     1201 gattctcgat caaaaatgaa gagcatcgct tgattttcct ccatagaatt tcgatacata
     1261 agtccagtgg cagtttcata ttcaccttca gcgatttcga tatccaaagt ggcgataagt
     1321 gaatcattgg tcgagcgcac caggcttaat gtaccttctt tggtaaaggg aatctctcga
     1381 gtcaggacct tttcattttt ttcgtttata cagcccgtaa tgcctaccag ggccataagg
     1441 cctagagcga taaattttct tattcttctt ttcatacggc ggaatttttt ttcgcgcgca
     1501 ataggagtat tacccctgct atgataaatg gaatgctgag ccactgccca gtgctgagta
     1561 aattccctag cgaagtttca aatcctccct ggcttttctt ataaaattca acgataaagc
     1621 gtaccgacca aagcagcact aaaaacaacc caaataggta gccctgttgt aatctttttt
     1681 gggtatacca gtaggtccaa tacaagatta caaagacaaa gacataacca aaagactcat
     1741 ataactgtgc ggggtggcgg gcgaaatcct ctccgttatt cgcaaaaata acgccaaaat
     1801 cagtccctgt gggatgtcca acgatttctg aattcataaa atttccaata cggaccaata
     1861 cggccccaga ggcaacggga ataacaattc ggtcaaaaag ccaaagcaag gactctttta
     1921 gcacgttttt ttgatagaga tacatcgcga taatgattcc tatagcggcc ccatgagagg
     1981 ctaatcctcg aaatccggtg aaagcaaaac cgcctttgaa cttgaagggt aaaaacaccg
     2041 aaaagaaatc ctggtgaaag agttcgggtt gataaaaaat gacatgaccc aggcgcgctc
     2101 caataaggat tgctaaaacc atgtacataa ataggctgtc taatttttcg agggcaaccc
     2161 cctcacggat aaatattttt ttcatcagat accaacctag cgaaaaggcc aatacgaaca
     2221 tcaaactgta gtattgaatt gtataaaatc caagatttat gccctctgag ggggcccaat
     2281 aaatacctaa agcgggtagc atatgatttg tttgaggtaa agataaaaaa aagcctgcgt
     2341 atgccacaga tttatggcac aggatcgtgc ccagagccgc cccagggatg acatcgtgca
     2401 atacgcttaa tggcgagcca acttccgtgc aatgcaccgt gtttcttgag ggcctctata
     2461 ctgtaatgag agcaagtggg gttgaaccga caggtagagg gtgtgaacgg agaaataacg
     2521 ttttgataaa acttgatcag cagaattaaa ggtttcgcga gtagagacaa aagactgatt
     2581 taaaaaaatt atctcagact aaaactgctg ccttctttgc catctttgag ttgaatcccg
     2641 gcttcttgca gtcggtctct aatcgcatca ctggttgcaa aatctttgtt ggcgcgggcc
     2701 tgattccgca agtcgataag taaatttaca gcagcttcaa gttgttgttg cccattattt
     2761 tgtccttcca tctccttggg taaccctaaa acatcataaa caaaactgtg tattgtggct
     2821 cttaacagct caagatcctc ttgggttatt ttagcgcccc cctcattaag ttgattaatc
     2881 catttggtcg cttcaaaaag ttgtgcaatc agaatcgggc tgttaaagtc atcgttcatg
     2941 gccgcataac acgaatcaac ccaaggagct attgcgaaat cagaagaatc ggacgcttca
     3001 atagactcca gtgtattcac agcctccata agcctttgat accctttttc actggccaaa
     3061 attgcttggt cagaaaaatc gagtatactg cgataatggg cctgatacat aaagaattta
     3121 gccacggccg gacgaatcgg ttgactcatt atggcgttat tcccagagaa aagttctctt
     3181 ggtaaaatat tattccctgt tgactttgcc attttcttgc cattcagggt cagcatattg
     3241 gcatgcatcc agtagcgaac aggtgcggtc ttattgcagg cctcggcctg agcaatttca
     3301 cactcgtggt gtgggaattt taagtccatc ccacctccgt gaacatcaaa ggtctctccc
     3361 aagtactttg tactcatggc ggtacattcc aaatgccatc ctggaaaccc gtcaccccaa
     3421 ggagagggcc aacgcatgat atgttgtggt tctgcctttt tccataaggc aaaatcttgc
     3481 ggattctttt tctcgctttg agcggtcaat tctcgggtat tggcaatcat atcctcgatc
     3541 ttgcgtccac tgagcttccc gtattgttga tcttcattaa atttcaaaac atcaaaatag
     3601 actgagccat ttttttcgta agcatagcca gcgcccaaga ttttttgaat aatctgaatt
     3661 tgctcaataa tatgacctgt tgcagtgggc tcgatatccg gtggcagggc attaaatgcg
     3721 ctcatgattt catgaaaatc aaccgtgtat ctttgcacga cttccatcgg ttcaatggcc
     3781 tcaatgcgcg ctttttttgc aatgcgatct tcgcctgagt ctgcgtcgtt ttcaaggtgc
     3841 ccagcatcag tgatattgcg tacataacgc actttgtacc ccaggtgttt gaaatatcga
     3901 taaattaaat caaatgatag aaatgtacgg caatttccaa gatgaacgta gttgtaaacc
     3961 gttggtccac agacatacat gcctacaaat tcgggaacca atggcgtaaa taattccttt
     4021 tcctttgtta aggaattata aatagaaagc ttacgatgtt ctggtttagg caatgtcatc
     4081 gcggataaat aaatcgatgt taaaatgaag tgttgagttt aatgtaatct aaaaactctc
     4141 ttttaacctt gtgattttta aattgaccgc caaattcact ggttacggtg gaactgtcaa
     4201 tatctcgaat tccacgggaa ttaacgcaca aatgtttggc gtcgataacg catgcgacat
     4261 cgtccgtgtt caatattttt tgcaattcct gaacaatttg catggtaagc cgctcttgaa
     4321 cttgtggcct ttttgcaaag taatcgacga ctctattcat ttttgaaaga ccaacgacag
     4381 taccattgga aatgtaggcg atgtgcgctc taccaacgat gggtaataag tgatgttcac
     4441 aagtagaata cagggtaatg tttttttcaa cgagcatttc tccgtactta tacttatttt
     4501 caaaagtgga ggcttttggc ttattatctg ggtgcaatcc ggcaaatatt tctttaacga
     4561 acatttttgc aacgcgcttt ggcgttcctt ttagactgtc gtccgttaaa tccataccca
     4621 aggtttggag aatattttgg acatcttttt caatacggtc cattttttct tgatccccta
     4681 tttcaaaggc atcagggcgc agcggcgtgc ggcttgaagt tcccacatga tcattgccga
     4741 aggcttcgat ttcttgcaat tgtttttcta aatccataaa aggtgtatgc ggtaattttt
     4801 tttcttttac ggggcaaaga tacgtatctc attgctcact tggaaaatac ttcgggattt
     4861 aacacgttta ttccattggt tatggtaaaa tatgattatt ttgtacccct tattttctgc
     4921 ttgaatgaaa caaattctac acttcgtttt ccttcttttt acaacagtgt taatcggaca
     4981 agttccgctg acccgtgtgg tgccccaaat tgtgggaaaa tatgatttta ccgctattgg
     5041 gaatacttta aatgtctcgg caaacccgaa cccttgtgag ttattgcctc agagttctgc
     5101 tacgctgaac cttcaaccga acgagacgtt ttttcaagcg catatgtatt ggtctgcgtc
     5161 tggccctgca gatgacacag tctccctaaa cggaaacacc gtaattgccc aaagaaccta
     5221 tagtattaac aataattttg gcttgtataa tacgcattat gctgatgtga cgaacctcgt
     5281 tggagctata ggtaatggcg tgtatacatt ttcggattac ctcggaacca taccttgtgg
     5341 taacagtacg aactatgggg gatggatgat ctatatcatt tttggtgagc ctacactacc
     5401 ccaaaatcag atcagtattt ttgaaggttt tgattatgtg agtggatcaa atccaaattt
     5461 ggacatcacc ttaacaggaa ttgatgtcgc cactgacgat ttagcgaaaa ttggattttt
     5521 agcttgggaa ggagatgcct ctatagcggt tcaggagacg ttaacgataa atgggaattt
     5581 aattgataat ccgccactta acccgggaga taacgctttt aatgggacca actcatatac
     5641 aaattcatcc actttatgga atatggattt agatgtatat gatttacaag gaattgtgca
     5701 gcctggtgat acccaaattg atattcaatt gacctctggg caggatttag ttttggtgaa
     5761 taacgttatt accagtgtaa attcggaaat tccagatgct gcgtgtacta ttgatgattt
     5821 ggatgttgtc tgtgataatn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6001 nnnnnnnnnn ngttgtctgt gataatggtc aaaatctctt cattgattat acggtctaca
     6061 atttaccgtc aacaagtcct ctttcggcag ggactcgtgt tgatttttat tggcagaatg
     6121 ttggtggtgg tccattgaac tacctcgata ccgtatttac ggtaaacgac atcccgattg
     6181 gagggcaaga atctggaaat accattttaa gtatcgtcgg gactccaccg caatttgatt
     6241 tggtcatgat tgtggatcca gcgaactcca tattggaaat tgatgaaaca aataatgaaa
     6301 atagactctt tatcgatacg acccaaccat tctccattgg tcctgatgta gagagttgtg
     6361 ccggtctaac ggtgaccctc gacacagggg tgtcttctcc agactttact tggcagtggt
     6421 ataaggatgg caatattata ccaggagcga ctaacccttc gattactgtt ggtctcaacg
     6481 gtgtttacac ggttgaaggg tttgaaggcc cgtgttttat aacggatgat atcgaagtta
     6541 cttttaattt gcctccagat gcttttcctc cggcagattt gttcttgtgt gacgatgggg
     6601 cgacagccgg aagttttgat ctnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncaccg
     6721 agaatgacga tgacttactt ggtggccagg atcctgcgtt gttctttgtt aagtattacg
     6781 aaacactcca agatgcgcaa gatgacacta atgtgatttt agtccctaca ggctatttta
     6841 tcagtcaacc ttctccacaa accatatacg ccagagtcga aagcccggaa ggctgttttg
     6901 ctattgatac ctttaaaatt ttcttcaccc gggttcaggc gggtcagcct gagggcatag
     6961 aagtttgcga taatgacgga gacggtttta ctgctataga tttgccgctt acttttgact
     7021 cagaagtttt agatggtgaa cctgccgcgg actatttaat tacttatcac aatgaccctg
     7081 tggaggccac cactggtgct aatgcgctgc ca
//
LOCUS       DPUP01000108            3449 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10737,
            whole genome shotgun sequence.
ACCESSION   DPUP01000108 DPUP01000000
VERSION     DPUP01000108.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..636)
                     /locus_tag="DHV98_03725"
     CDS             complement(<1..636)
                     /locus_tag="DHV98_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HCK05478.1"
                     /translation="MTKIKAAITAVGGYVPDYVLTNEILETMVISNDEWILSRTGIKE
                     RRILKEPGQGTSYMAIKAAQQLLEKANIDPKEIDLLIMATATPDMLVASTGVYVATEI
                     GATNAFSYDLSAACSSFLYGMSTAAAYIESGRYKKVLLIGADKMSSVIDYTDRTTCII
                     FGDGAGAVLFEPNTEGLGLQDEYLRSDGIGRNHLKMDAGGSILPASEQTVAN"
     gene            complement(814..1008)
                     /gene="rpmF"
                     /locus_tag="DHV98_03730"
     CDS             complement(814..1008)
                     /gene="rpmF"
                     /locus_tag="DHV98_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HCK05479.1"
                     /translation="MAHPKRKISKTRRDKRRTHYKATVAQIATDPTTGEAHLYHRAHW
                     HEGKLYYKGQVVIDAVGEVA"
     gene            complement(1018..1554)
                     /locus_tag="DHV98_03735"
     CDS             complement(1018..1554)
                     /locus_tag="DHV98_03735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05480.1"
                     /translation="MKEMKDYTIPFVGLKIGRHKYDFDLDKKFFEHFEYDEFHQADIK
                     LEVILDKKPNMLEIELSFDGSVNVSCDRTNEPFDLPVEGNYHFVVKFGQEQDDLHDEL
                     LILPHGAYQVNIQQQVYESIVLALPSKRIHPGIAEGTLKSDVLEQLEALKPKGAQQNQ
                     LEDVDPRWDNLKNLLTDK"
     gene            complement(1631..2718)
                     /gene="pdxA"
                     /locus_tag="DHV98_03740"
                     /pseudo
     CDS             complement(1631..2718)
                     /gene="pdxA"
                     /locus_tag="DHV98_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781888.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
     assembly_gap    2164..2180
                     /estimated_length=17
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2765..3361
                     /locus_tag="DHV98_03745"
     CDS             2765..3361
                     /locus_tag="DHV98_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HCK05481.1"
                     /translation="MFTGIIESIGEIIALTQDGGNLHITLRCDFTHELKIDQSLAHDG
                     VCLTVVDIQGDLYTVTAIQETLDKTNLSHWHVGGLVNLERAMQLGDRLDGHIVQGHVD
                     LVGTCSMAEEKDGSWHYLFTYDKDSGHVTVSKGSITINGVSLTVVDSAPGVLGVAIIP
                     YTYEHTNFKTLQAGRVVNLEFDIIGKYVARISRGYAGT"
BASE COUNT          902 a          766 c          759 g         1005 t
ORIGIN      
        1 gttggcgacg gtctgctcag aagcaggtaa tattgatcca cccgcatcca tttttaagtg
       61 atttctccca attccatcgg aacgcaggta ctcgtcttga aggcctaggc cctctgtatt
      121 gggttcaaat aaaaccgcgc ccgcaccatc cccaaaaata atacaggtgg ttcggtccgt
      181 gtaatcaatc accgacgaca ttttatccgc accgattaac aaaacttttt tgtaacgacc
      241 cgattcaata tacgctgctg cggtactcat accgtataaa aagctagagc acgcggcgga
      301 taaatcatac gaaaaagcat tcgtcgcccc gatttctgta gcgacataca cccctgttga
      361 agccacaagc atgtctggag tggccgtggc cataatcaat aaatcgattt ccttgggatc
      421 aatgttagct ttctccaaaa gttgctgggc cgccttgatg gccatataag aagttccttg
      481 gcctggctct tttaaaatac gacgctcttt aatgcctgtt ctcgaaagaa tccattcatc
      541 atttgagatg accatggtct ccaaaatctc gttggttaag acgtagtctg gaacatagcc
      601 tccaacagcg gtaatggctg ctttaatttt tgtcatatgc tttggaataa aatttgcgct
      661 ttttagccaa aattccaatt ttcgagggga aaagtactaa tttttgagca aaaacgcgtg
      721 tgtttttgac gcttttgtgc aattttcagc gcacaaaaaa actctcactt taattcaaat
      781 gagagtttaa agagcgccta atgcgttcgt gttttaagcc acctcgccta cagcgtcaat
      841 aacgacttga cctttgtagt acaatttgcc ttcatgccag tgggcacggt ggtatagatg
      901 tgcctcgccc gttgttggat ctgtagcgat ttgagcaact gtagctttat aatgggtacg
      961 tcttttatct cttcttgttt tggagatttt tcttttagga tgtgccatgg cgcaatatta
     1021 tttgtccgtt aatagatttt ttaaattatc ccaacggggg tcaacatctt ctaattgatt
     1081 ttgttgtgct ccctttggtt tgagtgcttc tagttgttcg agtacgtcgc tttttagtgt
     1141 gccctctgcg ataccgggat gaattctctt gctgggcaaa gccaagacaa tagattcgta
     1201 aacttgttgc tgaatattta cttgatacgc accgtggggc agaatcaaga gttcatcatg
     1261 caagtcgtct tgctcctggc caaactttac aacaaaatga taattgccct caacaggcaa
     1321 atcaaatggc tcattcgttc ggtcgcagga cacattaacc gatccatcaa atgacaactc
     1381 aatctccagc atatttggct ttttgtccaa aattacctcg agttttatgt ccgcttgatg
     1441 gaactcatcg tactcaaaat gctcaaagaa cttcttgtcc agatcaaaat cgtatttgtg
     1501 tcggccaatt tttagcccca caaaaggaat ggtataatct ttcatttcct tcatgtgcac
     1561 aaaagtattt taatcctcgg ccctaaaaaa ggcggtcgca aagatagtaa ataattttat
     1621 ttgcctgagc ctaatgatgt ttctttttgt gcgacggtcc ttttgccgaa atctcaagcg
     1681 gagcctgggt cagttttcga tgcatttttc ggtgacgcac gatgtttaaa gccgtaaaaa
     1741 cggcctcctt aaatgagcta atgttcgctt gattttttcc ggcgatatca aaagcagtac
     1801 cgtgatccgg agaagtccgc acagcattca agccggcggt aaagttaacg cccgcgccaa
     1861 acgacagggt tttaaaaggg atcaggcctt gatcgtggta ggctgccaaa acagcatcaa
     1921 aatgcttgta ttggcctgac ccaaaaaatc cgtcggctgg ataagggcca tagataaggc
     1981 tgccttcctc gcgcatcgca ttgattgtgg gggccattgt atcttgatct tcactgccga
     2041 ttacgccttg gtcaccagaa tgagggttta cgccaagaac cgcaatcttt gggcgggtaa
     2101 tcccaaaatc ttgagtcaaa gacgccatca ttgcgaccgc cttttgtctg attaagtcct
     2161 ttgnnnnnnn nnnnnnnnnn ttgtaatgcg ggctggagcg tctttaacgg gtacgtggtc
     2221 ggtcaggagt ccaacgcgta cttcctcaga gaccataaac atcaaagcag aaccaccaaa
     2281 ctcttgagcg agataatcgg tgtgtccagg aaacttaaac tcctcagatt gactgttttt
     2341 tttgtcaatt ggggctgtaa ccaaggcgtc aattttttta tttttgagcg cattgaccgc
     2401 tttttttaaa gaagcaatag ccaaaaagcc tgcttttggg tccactttgc catactgggc
     2461 ttcaaaagtt tctgaccaag cgttaaacac attgattttt ccgtgattga cctggctcaa
     2521 gtcactcaag gcattgaggt gacattctag gcctaattct tttttatacc aagtcaaaaa
     2581 cttgatgttg gcaaaaatca ctggggtaca gaattccagc attcttgggt ccgcaaagct
     2641 ctttaacaca atttctgggc caatcccgtt aaggtctcca actgaaattc ctataattat
     2701 tggattgttt attgccatat gagcgctttg ggtgttactt ttgcaaaggt aaataattga
     2761 gggtatgttc acaggtatta tagaatcaat tggcgaaata attgcgctta ctcaagacgg
     2821 gggaaatcta cacatcaccc tgcgttgtga cttcactcat gagctaaaaa tagaccagtc
     2881 tcttgcccat gatggggtat gtcttactgt tgttgacatt caaggggatc tttacaccgt
     2941 taccgcgatt caagaaaccc tggacaaaac caacctaagc cattggcacg tcggcgggct
     3001 ggttaatttg gaacgcgcca tgcagctcgg agatcgactc gatggacata ttgttcaagg
     3061 ccatgtggac cttgtcggca cctgttcaat ggctgaggaa aaagacggga gttggcatta
     3121 cctatttact tatgacaagg actcagggca cgtcacagtt tcaaaaggat ccattaccat
     3181 taatggcgtg agtttgacag tggtagatag tgcgccgggg gtgctcgggg ttgccattat
     3241 tccttacact tacgagcaca ccaattttaa aacccttcag gcgggccgtg tcgtcaatct
     3301 cgaatttgat atcatcggaa agtatgtcgc gcggatcagt cgcggctacg ctgggacttg
     3361 atttgtttgt aagcccaata aagaccaaaa gccacgccag ctacaattaa atagtgcagg
     3421 tgttggtcga tagggacaga tgcgtctgg
//
LOCUS       DPUP01000109            4409 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_41036,
            whole genome shotgun sequence.
ACCESSION   DPUP01000109 DPUP01000000
VERSION     DPUP01000109.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4409)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4409)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4409
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..938)
                     /locus_tag="DHV98_03750"
     CDS             complement(<1..938)
                     /locus_tag="DHV98_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010179744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome oxidase subunit III"
                     /protein_id="HCK05482.1"
                     /translation="MEATVSKTGTEGKTWGGGTQPFNVSYGKMMMWFFILSDALTFSG
                     FIASYGFSRFKFIDAWPIADEVFTHVPFLHGVPAPMYYVAFMTLVLIFSSVTMVLAVD
                     AGHKMQQSKVAWYMFFTIIGGGIFVGSQAWEWATFIKGDYGAVETNGGRILQFLDTEG
                     NRVALADFASPIPTDRVTHERKNGVWHYAEPTTRTTYDIAEVQKGFMANENLLIRTQY
                     LDQDGHPIVLSREASIEKLMNDGKFVVEGANLRHNEYGHPLFADFFFFITGFHGFHVF
                     SGVVINVIIFFNVIIGTYERRKSYEMVEKVGLYWHFV"
     gene            complement(980..1564)
                     /locus_tag="DHV98_03755"
     CDS             complement(980..1564)
                     /locus_tag="DHV98_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome oxidase subunit III"
                     /protein_id="HCK05483.1"
                     /translation="MSLSEQTELTQQRKAKKMLLWFSMISLAMSFAGLTSAYVVSKER
                     GDWLQDLALPSAFGWSLIAILLSSVTFEWAKRSVRLEQHQQAMKLLWVTWILGVGFML
                     LQYLGFSQIYNDFGYAFTGPTSSIAYTFIFLIVVLHLFHVLAALISLSVVIYNHYKQR
                     YTLGKTLGVELAALFWHFVDGLWLYLFLFFYFVR"
     gene            complement(1561..2457)
                     /gene="cyoE"
                     /locus_tag="DHV98_03760"
     CDS             complement(1561..2457)
                     /gene="cyoE"
                     /locus_tag="DHV98_03760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HCK05484.1"
                     /translation="MSQTVIISERPTSWLLFKEITKFRLSISVLFSSVAGYFLGAESI
                     GLDVLALLVIGGYCMVGASNVFNQIIERDLDALMERTKSRPLPAGHMTVNQAMALGLI
                     LTLIGLVSLYWINPKTAMFGAISIFLYVSVYTPLKTKTPLSVFVGALPGAIPFMFGWV
                     AATGSFGIEPGTLFMIQFFWQFPHFWAIGWFLDEDYKKAGFQMLPTGKRDKGTAVQIV
                     LYSIWTALTALIPVAHKTGSLQISLYSGFVVALLGLWLIWAAWRLYKQRTTAAAKKLM
                     LVSVAYLTLIQIIFIIDKFLIQ"
     gene            2579..3625
                     /locus_tag="DHV98_03765"
     CDS             2579..3625
                     /locus_tag="DHV98_03765"
                     /inference="COORDINATES: protein motif:HMM:PF00753.25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05485.1"
                     /translation="MNHRLLLSLICGILSTAFIAAQEKSQGSSDSKSQNDGVFVSAKK
                     IKDSLYYLSYKNTNAVAFLGRDYTILIDGFDAKAAPQALTTAGRLSLNPVRFVINTHH
                     HKDHTGGNDYYSDSGVTVLCDQQTYNNIWADVNAEVLNDLKKQRSELAKSMKLAGKTE
                     RGKEIGAKYNRLSEQYTDRELSYPAMTFSDNFNMNLINESILFKSVSKSHTSLDVYAY
                     FENSNVLATGDLYFNGKYPFIDEDFKGSIDGYIKAIDELLALCNNDTVIVPGHGSLAS
                     KSDLESYKRMLEYTQKGVQMDYLLGKTLEEVLANKTITANFDAQGYGMGYVKTEDYVS
                     MLYRAAEKRYPRKK"
     gene            complement(3703..>4409)
                     /locus_tag="DHV98_03770"
     CDS             complement(3703..>4409)
                     /locus_tag="DHV98_03770"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="gliding motility protein RemB"
                     /protein_id="HCK05486.1"
                     /translation="IEFSTGSRGGNALLGLTFKYKWSDRFNTYGQLLVDEFSSSDVLA
                     KNGSYKNKTAYQLGAKYYSAFGMPNLNLQLEYNRVRPFTYSHNTVVLNYGHNNQSIAH
                     TLGTNFSEFLAIARYRYQRFYGSLKYIQAKRGLEFVDSADAQVFYGGSIYGSEDFREG
                     DLNHEIGQGNTVDFKHVEFDAGYVINPASQLKLFARVIFRSFDPEISQSPNQKLNTTW
                     WSIGLRTDLFNWYRDF"
BASE COUNT         1404 a          983 c          875 g         1147 t
ORIGIN      
        1 acaaagtgcc agtagagtcc aactttctca accatctcat agctcttacg acgttcataa
       61 gtgcctatga ttacattgaa aaagataata acattaatca ctacccctga aaaaacgtga
      121 aatccgtgaa atccggtgat aaagaaaaag aagtcggcaa atagggggtg tccgtattca
      181 ttgtgtcgca aatttgctcc ttccacaacg aattttccat cattcattaa tttttcaatt
      241 gacgcttcac gggaaaggac gatcggatga ccatcttggt ctaggtattg agtgcgaatc
      301 aacaggtttt cattagccat gaatcccttt tgcacttcag caatatcgta tgttgttctg
      361 gtggtcggtt cggcatagtg ccaaacgcca tttttgcgtt catgggtcac gcggtccgtc
      421 ggaattggcg atgcaaaatc cgctaaggcc acacgattcc cttctgtatc taaaaattgt
      481 aatatacgcc ctccgttggt ctccacagca ccgtaatctc ctttgatgaa tgtcgcccat
      541 tcccatgcct gtgatccaac gaaaattcct ccaccgatta tcgtaaagaa catataccag
      601 gccaccttac tttgctgcat tttgtgacct gcatcaacgg ctaaaaccat ggttactgaa
      661 gaaaaaataa gcaccaaggt catgaaggct acataataca tcggcgccgg aaccccatgt
      721 aaaaagggga cgtgggtaaa tacctcatcc gcaatcggcc aagcatcaat aaatttaaat
      781 ctagagaatc cataagaggc aatgaatcca gagaatgtca aggcatctga aaggatgaaa
      841 aaccacatca tcatctttcc gtaactcacg ttgaatggtt gagttcctcc accccatgtc
      901 tttccttcgg tacctgtttt ggatacggta gcttccataa attattggtg tatttagagt
      961 gcaaaaatag gcattatttt tatctgacga aatagaaaaa caaaaagagg taaagccaga
     1021 gcccatcaac aaagtgccaa aaaagtgcgg ccagttctac ccctaaggtt ttccctaaag
     1081 tgtaacgctg tttataatga ttataaatta ccacactcaa tgaaatcaag gcggcaagaa
     1141 cgtggaataa atgcaatacc acaattaaaa aaataaacgt gtaggcgata ctgctcgtcg
     1201 gcccggtgaa ggcataacca aaatcgttat agatttgact aaatccgaga tactgaagca
     1261 gcataaatcc tacccctaaa atccacgtta cccatagcaa cttcatcgcc tgttgatgct
     1321 gctctaacct aacggagcgt ttggcccact caaaagtcac actgctgagc aatatggcga
     1381 taagactcca tccgaaggct gacggcaagg ccaagtcttg caaccaatcc cctcgttctt
     1441 tactcaccac ataagcgctg gtgagacccg caaaactcat ggccaatgaa atcattgaaa
     1501 accaaagaag catttttttg gcctttctct gctgtgttaa ttctgtctgt tcacttaagc
     1561 tcattgtata aggaatttat cgatgataaa aatgatctga atcaaggtca aataggccac
     1621 gctgaccaac attaattttt tggctgcagc agtggttcgc tgtttataca agcgccatgc
     1681 tgcccaaata agccacaacc caagcagcgc aacaacaaag ccagaataca gacttatttg
     1741 aagtgacccg gtcttgtgcg ccacagggat taaagccgta agcgccgtcc atatgctgta
     1801 taaaacaatt tgaacggccg ttcccttgtc ccgttttcca gtaggcagca tctgaaatcc
     1861 agcttttttg tagtcctcat ccaaaaacca tccaatggcc caaaagtgag gaaactgcca
     1921 aaagaattga atcataaata aggttccggg ctcgataccg aaggaaccgg tagcggcaac
     1981 ccagccgaac atgaacggta ttgccccagg caaagcccct acgaaaactg aaagtggcgt
     2041 tttagttttt aagggcgtat agacactgac gtataaaaaa atagagatcg ccccaaacat
     2101 tgctgtcttt ggattgatcc aatacaagga tacaagtcca atcagggtca aaataagccc
     2161 tagagccatg gcctgattca cggtcatatg ccctgcaggc aatggccttg atttggtgcg
     2221 ctccataagg gcatctaaat cacgttcaat aatttgatta aagacatttg aggccccgac
     2281 catgcaataa cccccaataa ctaaaagagc taaaacatca agcccaatag actcagcccc
     2341 caaaaagtaa cccgcgaccg atgaaaataa gacacttatg gacaatctga acttggtgat
     2401 ttctttaaaa agaagccaag atgtagggcg ctcagatatg attactgttt gagacaatgg
     2461 tgcggattaa actggacgca aatatacgtg actccgccct tttttcacaa ctaataaatc
     2521 attaagttag gggcgtaaat ttacttttat taccttcgaa ttctcaaacc aaatattcat
     2581 gaatcatcga ttattactca gccttatctg cgggatttta agcacagcat ttatcgcagc
     2641 tcaagaaaaa agtcaaggat caagtgactc taaaagtcaa aatgatggcg tttttgtctc
     2701 agcaaaaaaa ataaaggaca gcctctacta cctcagttat aaaaacacga atgccgtggc
     2761 gttcttaggt cgggattata ccatattaat agatggtttt gatgctaaag cagcgccgca
     2821 agcgttgact actgcagggc gcctgtccct taatcccgtg agatttgtga tcaataccca
     2881 ccaccataaa gaccacaccg gaggaaatga ttactacagc gactcagggg ttactgtttt
     2941 atgtgaccag caaacctata acaacatatg ggctgatgtt aacgcagaag tcttgaacga
     3001 cttaaaaaag caacgttcgg aacttgccaa gtccatgaaa ctggctggaa aaacggaaag
     3061 aggtaaagaa attggcgcta aatacaacag attaagcgaa caatatacgg atcgtgaatt
     3121 gtcttatccc gccatgacct ttagcgataa ttttaatatg aatttaatca atgaaagtat
     3181 attgttcaaa agtgtctcta aatcccatac gagcttggat gtctatgctt attttgaaaa
     3241 cagtaatgtc ttggcaaccg gcgacttata ttttaatgga aaatacccgt ttatagacga
     3301 agattttaaa ggtagcattg atggttatat caaagccatc gatgaattgc ttgccttatg
     3361 caataacgat acggtcattg tcccgggcca tgggtctctt gcctctaaaa gtgacctaga
     3421 aagctataaa cgcatgctcg aatataccca gaaaggggta caaatggatt atctattggg
     3481 aaaaacactt gaagaggtcc tcgccaataa aaccattaca gcaaatttcg atgcgcaagg
     3541 atacgggatg ggttatgtaa aaacagaaga ttatgtgagc atgctgtatc gtgccgcaga
     3601 aaagcgttac cctagaaaaa agtaattttt cctttccggg tataatttat ggggcctagt
     3661 tcacaaggct gatgagcccc tggtcttttt tgattcattc gatcagaaat ccctgtacca
     3721 attaaataaa tcagtccgca atcctatact ccaccacgtg gtattaagtt tttggttggg
     3781 ggactgagaa atttcaggat caaaggagcg aaagattacc cgcgcaaaaa gctttaactg
     3841 agacgctggg ttaatcacat atccggcatc gaattcaaca tgcttaaaat cgactgtatt
     3901 gccttgtccg atctcgtgat tgagatcacc ctcccgaaaa tcttcgctgc catagatgga
     3961 ccctccgtaa aatacctggg catctgctga atctacaaat tctaatccgc gtttagcctg
     4021 aatatatttt aaactaccat aaaatctctg gtaacgatat cgtgcaatgg ccaaaaattc
     4081 tgagaaattc gtccctaaag tatgcgctat agattgatta ttgtgcccat aattcaaaac
     4141 caccgtattg tgactgtaag taaaagggcg cacgcgattg tactcaagct gaaggtttaa
     4201 attgggcatg ccaaatgccg agtagtattt agcccccagt tgataggccg ttttgttttt
     4261 ataactcccg tttttagcca aaacatcaga agacgaaaac tcatcaacaa gcagctgacc
     4321 gtaagtgtta aatcgatcac tccacttgta tttaaaggtc agtcccaaaa gtgcattgcc
     4381 tccgcgagag cccgttgaaa attcaatgg
//
LOCUS       DPUP01000110            8941 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7718,
            whole genome shotgun sequence.
ACCESSION   DPUP01000110 DPUP01000000
VERSION     DPUP01000110.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8941)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8941)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8941
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..527)
                     /locus_tag="DHV98_03775"
     CDS             complement(<1..527)
                     /locus_tag="DHV98_03775"
                     /inference="COORDINATES: protein motif:HMM:PF00578.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05487.1"
                     /translation="MKKLLLFFGLISLSITVNAQVTNYNVGDTVDDFTVTDTEGNEHN
                     LYSITASGKYVFLDFFFVECGPCQTWQATYNEFHDRYGCNEGQVYCLSINNGFDNDQQ
                     VIQYEETFGGPFNHAPAVSNEGGGDVVDSNFGVSAYPTFCLISPENVIINTDIWPLTG
                     VETFEAAFPTGFDPEP"
     gene            complement(663..1943)
                     /locus_tag="DHV98_03780"
     CDS             complement(663..1943)
                     /locus_tag="DHV98_03780"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05488.1"
                     /translation="MKKIKFAFIIALMMITSGAAFGQILYGLKKTENGSSTIPFDVVT
                     IDPMSGNTEIVLSSNSLIGVAAGASTYDQQNSRYICWGFDTQNNQQLYVMDLDDLETT
                     STPFSAXXIQAIEMEYDLQTQKAYGLWWDGSAEHFGEIDLTTGLVSSIAILPGVEAVA
                     IGNSTFDSNTGTYIFIGVDTNQYKLYSIDAATGTILNAPTIWQNDDRYSALEFNNQNG
                     GKLYGLYQDKDYDNYSQTYQTYYTDLRLAEIDLTTGVSTVIDPQSAVVSGFIPGYALG
                     GLCFDQQTQTYIVRVQNETGGYLKLVDASNANVIASTAITNDNYFYELQVDNYSFANA
                     FYNLSASNPSAINDSEAILDIKIYPNPALNHFTIDAPERIEHYTIYSAQGAIVKQGAE
                     SNDFQVQINNLASGAYFIVVTTAKGTARKQFIVR"
     gene            complement(2195..3148)
                     /locus_tag="DHV98_03785"
     CDS             complement(2195..3148)
                     /locus_tag="DHV98_03785"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05489.1"
                     /translation="MSEYGFQSFPEYNSVLKYTTTEDHDIYSEVMTSHQRSSIGNETI
                     EEYMLKDYNKPKDFASYLYVSQLLQAKGIKIAIEAHRRHRDQCMGTLYWQLNDCWPVA
                     SWSGIDYYGKWKALHYTVKEAFKPYLLSQEIQENQMSFFVISDALDDASGQLLIELLD
                     FEGKVLRRWNESILVQGNQTNPVFKIPMSVFSQAGPLNQLVIKAEFHSENEALLAENK
                     IYLVPPKELDLPDPGISWSVSDFADHYAVTIKAARLAKNVFVSSTLPGNFSENYFDLL
                     PGEEKTITISKVSGAALKNHDMESFKAFGQSLKIQTLKDSY"
     assembly_gap    3158..3227
                     /estimated_length=70
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3228..3833)
                     /locus_tag="DHV98_03790"
     CDS             complement(<3228..3833)
                     /locus_tag="DHV98_03790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-mannosidase"
                     /protein_id="HCK05490.1"
                     /translation="MKGTNYIPQDPFLTRPTSEHYKFLLESARDAHMNMIRVWGGGVY
                     ESDEFYALCDQYGLLVWQDFMFACAVYPGEPEFLDNIKQEAIDNVKRLRNHTSIALWC
                     GNNESLSAWENWGWKEQVAKEQSQAIADSIWGSYDTLFHELLPEVVAQYDGDRNYWSS
                     SPSADMGVKEQYDSGDVHYWWVWWGKKAFEEYNTAIPRFMSE"
     assembly_gap    3964..4068
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4069..5056)
                     /locus_tag="DHV98_03795"
     CDS             complement(<4069..5056)
                     /locus_tag="DHV98_03795"
                     /inference="COORDINATES: protein motif:HMM:PF00703.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-mannosidase"
                     /protein_id="HCK05491.1"
                     /translation="MITKNLRNLFLIGFSIFAFLSCESKQEPLQIALNTDWTFRAVDQ
                     QEWSTAEVPGTVHTDLLHLGLIKDPFYRLNEHELQWIDKKDWVYRCTFEVSKRILDQD
                     HIDLNFEGLDTYAQVRLNDSLILKSDNMFRHFNVPVKNLLKPQDNTLEILFESPINKG
                     VEKFDALGYTIPMSGNDLAKIGQVEGQKEVSIFTRKAGYHFGWDWGPRLVTSGIWRPV
                     TLKAWSGIKIQDLFVRQNLKEDKAELTAEIEVLALETNQNAFAQVEILVDGEVLETTQ
                     IGLHSGVNSLKVPFVIDNPELWWPNGLGDQRLYDVGVRISQGQNTDKTSQQVG"
     gene            5252..5434
                     /locus_tag="DHV98_03800"
     CDS             5252..5434
                     /locus_tag="DHV98_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPXCG motif-containing cysteine-rich protein"
                     /protein_id="HCK05492.1"
                     /translation="MIEQYFSCPHCWEEQFKWVDGSVPEQEFIEDCEVCCNPIQFYIQ
                     VEQGEVESFSAEAIGQ"
     gene            5595..6284
                     /locus_tag="DHV98_03805"
     CDS             5595..6284
                     /locus_tag="DHV98_03805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05493.1"
                     /translation="MKNLFCVLVFLAAGVLNAQQMAFNFVEITAKENSQDKIAELFDE
                     FFGERERKSGGVFLERLRHGREDGRTHRIVFLWELDNGGWVTEPSEAEGDAFWRGIRN
                     HVESWGSARAGRIMNLHPGDTEKYPTIHIWDLKAGDPKAFAAAQAELVNNSNGAFDGR
                     TVAFGTYDVNKPNGATHWALVAGEDLNDHMSLYQELQTTQSKAFYKYIEDRGEAVQTG
                     DFIVERLKTYQ"
     assembly_gap    6376..6496
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6497..7401
                     /locus_tag="DHV98_03810"
     CDS             <6497..7401
                     /locus_tag="DHV98_03810"
                     /inference="COORDINATES: protein motif:HMM:PF02230.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05494.1"
                     /translation="TNARLRRIIKGVIITPLMLVLFACNKSDDVCAGNEDALILNHNG
                     LNREYILYQPQGHDGTSPLPVVLNFHGYGGFAADHMQYADMRNLADQENFILVYPQGS
                     CLDGAPHWNSLLAGSDNKSDAEDIAFISDLIDEIAQNYVIDLERIYACGYSNGGMMSY
                     ALACALSDRIAAIGSISGTMLDWPEICDPAHPTPVIIFHGTNDDVLPYEGNSGFTSVS
                     YAVDYWTSFNELGASPSQTDIFSNGSRVVEYESYGPGLNSVSLDLYRVIQGGHYWFDQ
                     STLGFRLNQTLWDFFNRYDINGLR"
     gene            7498..>8941
                     /locus_tag="DHV98_03815"
     CDS             7498..>8941
                     /locus_tag="DHV98_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010180746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid hydroxylase"
                     /protein_id="HCK05495.1"
                     /translation="MSTEEHQIEFNEVTAKLPENLHPFIVKQPYSEYTAQNQAVWRYV
                     MRLNVDYLKKVAHESYIEGLGLTGITVDEIPHMEGMNRILKDIGWAAVAVDGFIPPNA
                     FMEFQAHNVLVISSEIRTIDHIGYTPAPDIIHEAAGHAPIIANPEYAEYLRRFGELGS
                     KAISSPDDDLIYEAIRKLSILKENPNSTQQEIDQATKEVEEVQNNVQELSEMAKIRNL
                     HWWTVEYGLIGSLENPKIYGAGLLSSIEESKDCLSDVVQKRPYTIEAAEVSFDITAAQ
                     PHLYVTPDFAHLSYVLEKFANKMAVRTGGLSSIEKLVKSTKMGTAELSTGIQISGVFT
                     RVIAFEGAPIYLQTTGATALASQGRELIGHGTHQHPDGFGSPVGKLEGTNLAIEDMSP
                     RDLEAYGIVEGKQVALNFEGGVCVQGRIVTGKRDIRGKIQLITFRECRVTYQDEVLFD
                     PSWGVYDMAVGKSVVSAFAGPADDKSFKNIH"
BASE COUNT         2441 a         1809 c         1942 g         2451 t
ORIGIN      
        1 ggttcaggat caaatccagt agggaatgcg gcttcaaaag tctccacgcc agtaagcggc
       61 caaatgtctg tattaatgat cacgttctcc ggactgatca aacaaaaggt tgggtaggca
      121 ctaacgccaa aattggaatc aacgacatca ccaccccctt cattactcac cgctggagca
      181 tgattaaaag gacccccaaa ggtttcctca tattggatca cctgctgatc attgtcaaag
      241 ccgttattaa tggataagca atacacctgg ccttcgttac agccgtatcg gtcatgaaat
      301 tcattatagg tcgcttgcca agtctgacaa gggccacact ctacaaagaa aaagtccaaa
      361 aacacatatt ttcctgaagc cgtaatgctg taaagattgt gctcattacc ttctgtatcg
      421 gtgactgtaa aatcatctac ggtatcccca acattgtagt ttgttacttg agcattgacc
      481 gttatggaca gacttatcag tccaaaaaat aagagtagtt ttttcataaa atagaggttc
      541 aaataaatat gtttttagga caaactgcag ttttcagcca tttaggattt tggctaatga
      601 gaccaatcac agcttttgac tacagaaagt tttttaaaga tagtgaattg cggaatacta
      661 atttatcgca cgataaattg tttccgagcg gtccctttgg cagtagtaac aacaataaaa
      721 taggcccctg aagctaaatt gtttatttgc acttggaaat cattagattc ggcgccctgc
      781 ttgacgatcg ccccctgagc ggaataaatg gtataatgct caatgcgctc aggtgcgtca
      841 atagtgaaat gattcaacgc gggatttggg taaatcttta tatccaagat ggcctcggag
      901 tcatttattg cgcttggatt tgacgccgat aaattataaa aagcattagc aaaggagtaa
      961 ttatcgacct gcagttcata aaaatagttg tcgttagtta tggcggttga ggcgataaca
     1021 ttggcattgg aagcatccac taacttcaag taaccgccag tttcattttg aacccgaacg
     1081 atataggttt gggtctgttg atcaaaacac aaacccccta aagcatagcc gggaataaag
     1141 ccgctgacta cagcgctttg aggatcaatt accgttgaga ctccagtggt taaatcgatt
     1201 tcagccaagc gcaaatcggt ataatacgtt tgataagttt ggctgtaatt gtcgtagtct
     1261 ttgtcttggt ataatccgta aagtttgcct ccattttggt tgttaaattc taaggcagaa
     1321 tatcggtcgt cattttgcca aatggttggc gcatttaaaa tagtgcccgt ggcggcatca
     1381 atactataga gcttatattg gtttgtgtca actccgataa aaatataggt gcccgtgttt
     1441 gagtcaaagg tagaattccc aatggctacg gcctcaaccc caggtaggat cgcgatagaa
     1501 gaaaccaggc cggtggttaa atcgatttct ccaaaatgtt ctgcactccc atcccaccaa
     1561 agaccatagg ccttttgggt ctgtaaatca tactccattt caatggcctg aatcgnnatc
     1621 gcactaaagg gcgtactcgt ggtttcgagg tcgtctaaat ccataacata aagttgttgg
     1681 ttgttttgcg tgtcaaaacc ccaacagatg taacgactat tttgttgatc ataggttgat
     1741 gccccagcag ctacaccgat tagagaattc gagctgagta caatttctgt gtttccgctc
     1801 atgggatcga tggttaccac atcaaaggga attgtggaag agccgttttc tgttttcttt
     1861 aagccgtaaa ggatttgacc aaaggcagcc cctgatgtaa tcatcattag cgcaatgatg
     1921 aatgcaaatt ttatcttttt cattaagaca aaattaaacg atttcagtga gaataatctt
     1981 ttatttatgg cggttttttg actaaaacac tttgcatgag cagactagcg tttttgtttt
     2041 tatgcttttt cacgcctttt ttagaggccc aaattccgga tcaattaaaa gccctagagg
     2101 tgcataataa agagcgtgct tcgctcgggg ttccggcatt aatttggaat gaaaacctag
     2161 atgcggcaat tgggtagggg agcatcctta ttaattaata actgtcctta agggtttgaa
     2221 tttttaggct ttggccgaag gctttgaacg attccatatc atggtttttt aacgcagcgc
     2281 ctgaaacttt gcttatagtg atggttttct cttcgccggg gagcaagtca aaataatttt
     2341 ccgaaaagtt acccggcaga gtgctcgaca caaacacatt cttagccaaa cgcgcagcct
     2401 tgatggttac cgcgtaatga tccgcaaagt ccgaaacgct ccaagaaatg cccggatcgg
     2461 ggagatctag ttcttttggc ggtactaaat aaatcttgtt ttcagccaaa agcgcttcat
     2521 tttccgaatg aaactcagct ttgatcacga gctgatttaa tggaccagcc tgcgagaaca
     2581 cgctcatagg aattttaaag acggggttgg tttgattgcc ttggaccaaa atcgattcat
     2641 tccaccgacg caaaactttc ccctcgaaat ccaataattc aataaggagc tgccccgagg
     2701 cgtcatctaa tgcgtcggaa atcacgaaaa aactcatttg gttctcctga atttcttgac
     2761 tcagcaagta aggtttgaag gcctctttta cagtgtaatg cagggctttc cattttccgt
     2821 aataatcaat acccgaccaa gacgccaccg gccagcagtc gttgagctgc caatacagcg
     2881 tgcccataca ttggtcgcga tgacgcctat gggcctcaat ggcgatcttg attcctttgg
     2941 cctgtaacaa ctgactcaca tacaagtaag acgcgaagtc cttgggcttg ttataatctt
     3001 tgagcatata ctcttcgatg gtctcattgc cgatactcga gcgctgatgt gaggtcatga
     3061 cctcagagta gatgtcgtga tcctcggttg tagtatattt cagaacagaa ttatattcag
     3121 ggaaggactg aaatccgtat tccgacataa atcgtggnnn nnnnnnnnnn nnnnnnnnnn
     3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnttc cgacataaat
     3241 cgtgggatgg ctgtattgta ttcttcaaag gcctttttgc cccaccaaac ccaccaataa
     3301 tgtacatctc cactatcgta ttgttcttta acgcccatat cggcagatgg tgaagaggac
     3361 caataatttc gatcgccatc gtattgtgcg acgacctcag gaagcaactc gtgaaataga
     3421 gtgtcatagg atccccaaat ggaatccgcg atcgcttgag attgctcttt ggccacttgt
     3481 tctttccagc cccaattttc ccaggccgaa aggctttcat tattgccaca ccatagggcg
     3541 atagaggtgt gatttcttag tctcttgaca ttatctatgg cctcctgttt tatgttgtcc
     3601 aaaaactccg gctcgccggg gtaaaccgcg caggcaaaca tgaagtcctg ccaaaccaaa
     3661 agaccatact gatcacatag ggcataaaat tcatctgatt catagacacc gcctccccat
     3721 acgcggatca tattcatatg ggcgtctcgg gccgattcta ataaaaactt atagtgctcc
     3781 gaggtaggtc gggtcaaaaa cggatcttgt ggaatgtagt tggtgccctt cataaatact
     3841 gggaccccat tgactttaaa gtaaaaggac gtcccgaaat tatccggttc tctgatgagc
     3901 tccagggtgc gcaaaccaac ttgttgggtc gttttatcgg tgttctggcc ttgagaaatg
     3961 cgtnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnaa ccaacttgtt
     4081 gggacgtttt atcggtgttt tggccttgag aaatgcgtac accaacgtca tagaggcgtt
     4141 gatctcccag gccattgggc caccaaagtt ctggattgtc aataacaaaa ggaaccttca
     4201 gactattgac ccccgaatgg agtccgattt gcgtagtttc caagacttcg ccatcaacta
     4261 agatttccac ttgtgcgaaa gcgttttggt tcgtttctag ggccagtact tcaatttccg
     4321 cggtgagctc cgctttatct tcttttaggt tttggcgcac aaacaaatct tgaattttta
     4381 ttccactcca agccttcaaa gtaaccgggc gccatatacc cgaggtcacc aagcgcgggc
     4441 cccagtccca gccaaagtga tagcctgctt tgcgggtaaa aatactgacc tctttttggc
     4501 cctcaacctg gcctattttg gccaaatcat taccagacat ggggatggtg tagcccaggg
     4561 cgtcaaattt ttcgacccct ttattaatgg gggattcgaa taggatttcc aaggtattgt
     4621 cctgaggttt tagcaggttt ttaaccggca cattaaagtg gcgaaacata ttgtcgctct
     4681 tgaggatcag actgtcattg agccgcactt gagcgtaagt gtcgaggcct tcaaagttta
     4741 agtcgatatg gtcttgatca agtattcttt tggagacctc aaaagtacag cggtaaaccc
     4801 agtctttttt atcaatccac tgcagctcgt gctcgtttag gcgataaaat ggatctttga
     4861 tcagtccgag atgcaataaa tcggtatgaa cggttccagg aacctctgcc gtggaccact
     4921 cctgctgatc cactgccctg aaagtccagt ccgtattgag agcgatctgc aaaggttctt
     4981 gctttgattc acaacttaaa aaggcaaata ttgaaaagcc aatcaggaat aaattcctca
     5041 gattttttgt gatcattggg gtactatttg aatgacaatt tcaataaaag taggtaacaa
     5101 tttttaattt tactttatta cacattaaca actagagcgc catgtctata aatcctaaca
     5161 ccataacggg tcaaatctat ttgacgattt ttgatttgtt agaaaaagac cctagaggaa
     5221 ttcaatggac tgagctcaat aatttgattt aatgatcgag caatatttca gctgccccca
     5281 ttgttgggag gaacaattta aatgggttga tggatctgta cctgaacagg aatttatcga
     5341 agactgcgag gtgtgctgta accccataca attttatatt caggttgagc agggcgaggt
     5401 tgagtccttt tcggctgagg ctattgggca ataaggattt atattttttg gtctaggtat
     5461 ttaataagcc atattggtta ttaaaaatag ggcaggccta aatttaaatg acataatgta
     5521 ttgcaaaata caacaaaaga tactattttc actttttatt aaatcaacac aaccgaatct
     5581 ttaaaacaat cattatgaaa aatttatttt gtgttcttgt ttttctcgct gcaggggttc
     5641 tgaatgccca gcaaatggcc tttaattttg tagaaattac agccaaagaa aattcacaag
     5701 acaaaatcgc agagctcttc gatgagtttt ttggagagcg tgagcgaaaa tcggggggcg
     5761 tctttcttga acgcctacgt cacggtcgcg aggatggacg aacccataga attgtatttc
     5821 tttgggagtt agacaacggc ggatgggtaa ctgagccttc agaggctgag ggagacgcat
     5881 tttggcgtgg aatcagaaat catgtagaat catggggctc agccagagcg ggaagaatca
     5941 tgaaccttca cccaggagac accgaaaaat atccaacgat acatatttgg gatttaaagg
     6001 cgggagatcc taaagcattt gccgcggccc aagctgagct cgtaaacaat tcaaacggag
     6061 catttgacgg ccgcacggtt gcctttggca catacgacgt gaataaacca aatggagcca
     6121 ctcattgggc gctggtagcg ggcgaagact taaacgacca tatgagttta tatcaggaat
     6181 tacaaaccac tcaatcaaaa gcgttttata agtatataga ggaccgtggc gaagcggttc
     6241 agacaggaga tttcattgta gaacgactta aaacctatca ataagcacaa cgggtttaag
     6301 tctattattt gtctcaacaa tagatgactc attggcgcgt taaatccata tgatgacaaa
     6361 tgctcgatta cgtcgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnccac aaatgctcga ttacgtcgaa ttatcaaagg ggtgatcatc
     6541 acccctttaa tgttagtcct tttcgcgtgc aataagtcag atgacgtttg cgcagggaat
     6601 gaagacgcgt taatcttgaa tcacaacggc cttaatcgcg aatatattct atatcaacct
     6661 caagggcacg atggcacaag ccctttgcca gtagtgctaa attttcatgg ttatggcggt
     6721 tttgccgcgg atcacatgca atatgctgac atgcgtaatc tagcagatca agagaatttt
     6781 attttagttt atcctcaagg aagttgtttg gacggagccc cacattggaa ttcattgtta
     6841 gcaggctcgg ataacaagag tgatgcggag gatattgctt ttatttctga cctgattgat
     6901 gaaatagctc aaaattatgt cattgactta gagcgcattt atgcttgtgg atattctaac
     6961 gggggcatga tgagttacgc cttggcttgt gctttgagcg accgcattgc tgccattggg
     7021 tcaatttctg gaaccatgct ggattggccc gagatttgtg acccagcaca tcctacccca
     7081 gttattattt ttcacggcac gaatgacgac gttttgcctt atgagggtaa ttcaggattt
     7141 acatcagttt cctatgccgt ggactactgg acatcgttta acgaattagg cgcttcacca
     7201 tcacaaacgg atattttttc taatgggtca agggttgttg aatatgagtc ttatggccct
     7261 ggtcttaatt ccgtttcttt ggatttgtac cgagtgattc aaggggggca ttattggttt
     7321 gatcaaagca ctttagggtt taggttaaat caaacgcttt gggatttttt caatcgatac
     7381 gacatcaatg gactgagata aagcctcttc aatggattag aaaatctatt cgaatgcctt
     7441 atctttatgg gaaaattttc agggtattcc agacctgagt taaacttttt ggatcccatg
     7501 tctacggaag aacatcaaat cgagttcaat gaggtcacgg ctaaattgcc ggaaaatttg
     7561 catccgttta ttgtcaagca accttacagt gaatacaccg cgcaaaatca agcggtttgg
     7621 cgttatgtga tgcgattgaa cgtggattat ttaaagaaag tagctcatga atcctacata
     7681 gagggattgg gtcttaccgg aattaccgta gacgaaatcc cccacatgga ggggatgaac
     7741 cgaatcctaa aggatattgg ctgggccgct gttgccgtgg acggctttat tccgcccaat
     7801 gcatttatgg agtttcaagc acataatgtt ttggtgattt cttcagagat cagaaccatt
     7861 gaccatatcg ggtacacgcc agcaccagac atcattcacg aagcagcggg gcatgcgcca
     7921 atcatcgcga atccagaata cgcagaatat ctgcgtcgat ttggtgagct cgggagcaaa
     7981 gcaatttctt cccccgatga tgatttaatt tatgaggcca tccgcaaatt atccatttta
     8041 aaagagaatc caaattcaac ccagcaagag attgatcagg ccaccaaaga ggttgaagaa
     8101 gttcaaaaca atgttcagga actttcagag atggccaaaa tcagaaacct gcattggtgg
     8161 accgttgagt acgggttaat cggcagttta gaaaatccaa aaatttatgg agcaggcctt
     8221 ttatcttcta tagaagaaag caaagattgc ctgtctgacg ttgtccaaaa acgcccctat
     8281 acgattgaag cggctgaggt aagctttgat attacagcgg ctcaaccgca cttgtatgta
     8341 acgcctgact ttgcgcattt aagctatgta ctcgaaaaat ttgccaacaa aatggcggtg
     8401 cgcaccggag gattatcgag tatcgaaaaa ctggtgaagt cgaccaaaat gggaacggca
     8461 gagctctcta cgggtattca aatctctgga gtgtttacaa gggttatcgc ctttgaaggt
     8521 gccccgattt atttgcaaac gacgggagcg actgctttgg cgtcgcaggg acgcgaactc
     8581 atcggacatg gtacacatca gcatcccgat ggttttgggt ctccagtagg aaaactggag
     8641 ggcacaaatt tggctattga agatatgtct ccaagagacc tcgaagccta tggaatcgtc
     8701 gaaggcaaac aggtggcctt aaattttgaa ggtggggtct gtgttcaggg gcgcatcgta
     8761 acgggaaaac gcgacatacg cggaaaaatt caactcatta cctttagaga gtgccgcgtg
     8821 acttatcaag atgaagtttt atttgatccg agctgggggg tctatgacat ggcggtcggg
     8881 aaaagtgttg tttccgcttt tgctggtcca gccgacgata aatcttttaa aaacatccat
     8941 a
//
LOCUS       DPUP01000111            2998 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23265,
            whole genome shotgun sequence.
ACCESSION   DPUP01000111 DPUP01000000
VERSION     DPUP01000111.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(110..>1516)
                     /locus_tag="DHV98_03820"
     CDS             complement(110..>1516)
                     /locus_tag="DHV98_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HCK05496.1"
                     /translation="LVREQLLHLAEQVQLKQAIEAQFTGGLINETEGRAVGHAQLRNF
                     TQMPQEVAQTLERIKSFVSAIENGAHKGHTGLPITHVVNVGIGGSDLGPDMVCEALAY
                     YKNHLEVRFVSNVDGDHVHEQLKELPAEQTLFVIVSKTFTTQETLTNAQTIRKWFLKQ
                     APESAIAHHFAAVSTNLDAVGAFGIDSELVFPMWDWVGGRFSLWSAVGLSIALSVGYD
                     NFESLLRGAHDMDLHFRETEFDQNMPVLMALISVWYNNFYGAESECIVPYTQYLSKFV
                     AYLQQGIMESNGKYVDRNGDIVNYQTGTLVWGSTGTNAQHAFFQLIHQGTKLIPADFI
                     AFKACLHGEQDHQNKLLANCVAQTQALMTGTQRQNIESPYRVFTGNKPTNTLLIDKLT
                     PERLGGLIALYEHKLFVQGVIWNIFSYDQWGVELSKKLAVNVLNNIESSDDSSSESKN
                     NHPNFDASTAELLRRIKA"
     assembly_gap    1517..1599
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1742..>2202)
                     /locus_tag="DHV98_03825"
     CDS             complement(1742..>2202)
                     /locus_tag="DHV98_03825"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCK05497.1"
                     /translation="GYVLMDEASGNYFGKRLIRDYYYGIMPEPLMKAFSARFNLDADE
                     IKLNVYQKPNPNTYLASFAEFIFTAEEVNGYFYQLISDGMDRFIKRRVLCYPEAQNVP
                     IHFIGSIAHFSEEMIKNVMKPYHLKLGKIIRRPIDGLIEYYRQHRLNAEA"
     assembly_gap    2203..2274
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2275..>2506)
                     /locus_tag="DHV98_03830"
     CDS             complement(<2275..>2506)
                     /locus_tag="DHV98_03830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCK05498.1"
                     /translation="ETAEVLDFYGAGAGTKTPNEILTKALKSLFTKAVVTVNEDLLAA
                     VYAATTEPGIVCILGTGSNSCYFDGEKIHAHVP"
     assembly_gap    2507..2691
                     /estimated_length=185
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2692..2842)
                     /locus_tag="DHV98_03835"
     CDS             complement(<2692..2842)
                     /locus_tag="DHV98_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003435672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HCK05499.1"
                     /translation="MTLIADGGSTKCDWILLDAKGEVLVKTRTKGLNPAVIPYDELIK
                     RIANNK"
     gene            complement(2846..>2998)
                     /locus_tag="DHV98_03840"
     CDS             complement(2846..>2998)
                     /locus_tag="DHV98_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013072230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCK05500.1"
                     /translation="DYVSNPHTCNFDAEAGIALNDHFFKLVAWYDNEYGYSAKLVELA
                     QYVAKL"
BASE COUNT          744 a          615 c          536 g          763 t
ORIGIN      
        1 ttatgttttt aaagtcgggg aatcgccatg aaagtaaaaa agtaagcccg cttgaaaaaa
       61 ccaaacgggc cccttttcat gaattgatca tgattattta tgttttgttt taagccttta
      121 tacggcgcaa taattctgcg gtagaagcat caaaattagg gtgattgttc tttgactctg
      181 agcttgaatc atcacttgac tcaatattat ttaaaacatt aacagccagt tttttactga
      241 gctcaacacc ccactgatca tagctgaaga tattccaaat aaccccttgc acaaatagct
      301 tgtgctcata aagagcaata agtccaccga gacgctcagg ggtaagttta tcgataagca
      361 atgtgtttgt gggtttgttg cccgtaaaca ctcgataagg gctctctata ttttgccttt
      421 gggtgcccgt cattagcgct tgggtttgag cgacgcagtt cgctaaaagt ttattttgat
      481 ggtcttgttc tccgtgtaaa caagccttaa aggcgatgaa gtctgctgga atgagcttgg
      541 tcccttggtg gatcagctga aaaaaggcgt gttgtgcatt ggtgcctgtg ctgccccaaa
      601 ctagagttcc ggtttgataa ttcacaatat caccgttgcg atccacgtat ttaccattgc
      661 tttccattat cccctgctga agataggcca caaacttgct caaatactgg gtgtaaggca
      721 cgatacattc agattcagcg ccgtaaaaat tattatacca taccgagata agtgccatca
      781 gcaccggcat gttttggtca aattcagtct cacgaaaatg caggtccatg tcatgagccc
      841 cgcgcaaaag cgattcaaag ttatcgtaac ccacactaag cgcaatagaa agccctacag
      901 cactccataa agagaaacga cccccaaccc agtcccacat agggaaaaca agctcagaat
      961 caatgccaaa ggctcctaca gcatcaagat tcgtcgaaac agccgcaaaa tgatgggcga
     1021 tagccgactc tggcgcctgc tttaagaacc attttctaat ggtttgcgca ttggtcagcg
     1081 tttcttgagt ggtaaaggtt tttgaaacaa tcacaaaaag cgtttgttct gctggtaatt
     1141 ctttgagctg ctcatgtaca tgatctccat ctacattact tacaaaacgc acctctaggt
     1201 ggtttttgta atacgctaaa gcctcacaaa ccatgtctgg ccccaggtca ctgcctccga
     1261 tacctacatt gaccacgtgg gtaatcggca gaccagtgtg gcctttatgt gcgccatttt
     1321 caattgcaga gacaaaactt ttaatgcgct ccagagtttg tgccacttcc tgtggcattt
     1381 gtgtgaaatt tctcaactga gcatgcccca ctgctctacc ctcagtctcg ttaatgaggc
     1441 caccggtaaa ctgagcctct atggcctgtt ttaactgaac ttgctcagcc agatgcagta
     1501 attgctcgcg caccagnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng ttgacgcact aaaagtgttt
     1621 acccgcatag ggtcattcaa aaaaagatca gtcatagacc aatctttttg agcgttatat
     1681 aattccccta gagcagccca tgctgctgtt tgggtcggat ttatttttgg gagtttatga
     1741 ctcatgcctc tgcatttaat ctgtgctgtc tatagtattc gattaatccg tcaatcggtc
     1801 gccggattat ttttcctaac ttcaggtgat aaggcttcat tacgttctta atcatctcct
     1861 cagaaaaatg cgcaatggat ccaataaagt ggatcggaac gttttgcgcc tcagggtaac
     1921 aaagcacacg gcgtttgata aaacgatcca tgccatcaga aatgagttga taaaaataac
     1981 catttacctc ttctgcagta aaaataaatt ctgcgaagga ggcaagataa gtattaggat
     2041 ttggcttttg ataaacattc aactttatct catctgcatc cagattaaat cgggcagaaa
     2101 acgctttcat caaaggctct ggcataatgc cataataata atcacgaatt aatcgcttac
     2161 caaagtaatt accactggct tcatccataa gtacatagcc tannnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaggcac
     2281 atgggcatgt attttttcgc cgtcaaaata acagctattg cttccagtgc ccaatataca
     2341 gacaataccc ggttccgtag tcgcggcata aaccgcggcc aacaagtctt catttacggt
     2401 aactactgcc ttagtaaata aggatttcaa ggcctttgtc aagatttcat ttggggtttt
     2461 agttcctgcc ccggcaccat agaaatccaa aacctctgcg gtctcannnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nccttattgt
     2701 ttgcaatccg tttgatcaac tcatcatagg gaatcactgc cggattaagc cctttggttc
     2761 gtgtttttac caaaacttcg cctttggcat ccaataggat ccaatcgcat ttcgtagaac
     2821 caccgtctgc tatgagcgtc ataaactaga gctttgcaac gtattgggcc aattcaacaa
     2881 gtttggctga gtaaccgtac tcattatcgt accaggctac cagtttaaag aaatggtcat
     2941 taagggcaat tcccgcttcg gcatcaaagt tacacgtgtg tgggttgctc acgtaatc
//
LOCUS       DPUP01000112           10578 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_549,
            whole genome shotgun sequence.
ACCESSION   DPUP01000112 DPUP01000000
VERSION     DPUP01000112.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10578)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10578)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10578
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..488
                     /locus_tag="DHV98_03845"
     CDS             <1..488
                     /locus_tag="DHV98_03845"
                     /inference="COORDINATES: protein motif:HMM:PF00588.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HCK05501.1"
                     /translation="WLAVFKQPKNTALDEACWVVALDDVQDPGNMGTILRLCDWFGIS
                     HVVCSLDTVDRFNPKVVQSSMGSIARVQVHYVSLDQWLDAQTKPIFGAVLDGQSLTKV
                     IWPKQGVLLMGNEGQGIRPQRARYITDHLSISGAPSRGAESLNVAMATGILLHQWHLN
                     Q"
     gene            complement(509..>1021)
                     /locus_tag="DHV98_03850"
     CDS             complement(509..>1021)
                     /locus_tag="DHV98_03850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PorT protein"
                     /protein_id="HCK05502.1"
                     /translation="LEVSPQAGFNVGLIGDLRINDYLNLRLEPGIYFTQRNLTFPRIE
                     EESDYFREVKSTYVHLPLLLKVSTKRLNNFKPFIVGGISKSINLGSNETNPEDNYFGQ
                     FRMTRNTSYYELGFGIDFNLYYFKFSPSIRGVFATSDELVRDRNPLSPWTSNIASMKT
                     RGVFINFTFQ"
     assembly_gap    1022..1175
                     /estimated_length=154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1176..1299)
                     /locus_tag="DHV98_03855"
                     /pseudo
     CDS             complement(1176..1299)
                     /locus_tag="DHV98_03855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781295.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PorT protein"
     gene            complement(1368..2099)
                     /locus_tag="DHV98_03860"
     CDS             complement(1368..2099)
                     /locus_tag="DHV98_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002990032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HCK05503.1"
                     /translation="MAEKIKPYKTSALDKKAQVEQMFDTISGEYDQLNRVISFGADLQ
                     WRKKVVRYVAEHSGETLLDIATGTGDLAIAFAKKTKAKEIIGLDLSQGMLNQAIAKVQ
                     GLPYADRLRFVKGDSEALPFDDNYFDAITVSFGVRNFEHLENGLAEIFRVLKPAGLLV
                     ILETSVPEKFPFKQGYHFYSKGIMPTIGRWFSKDKSAYRYLSDSAASFPYGQAFNNIL
                     AEIGFIVQPHNPQTFGVATIYRATK"
     gene            2226..3575
                     /locus_tag="DHV98_03865"
     CDS             2226..3575
                     /locus_tag="DHV98_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HCK05504.1"
                     /translation="MKIIIAGAGEVGFHLAKLLSFESQDITLIDTNRDSLNYADTHLD
                     IRVIRGDATSIAVLKEAQIGKTDLVIGVTSSETTNITACVLAKQLGAKRTIARIANTE
                     FIEHKDEVGFTKFGIDELISPEALAATEIELLLNQSAFNDTYEFEDGALTMIGLHLSR
                     TAAFVGRTVKEVGLIYPELQYVPIAIQRFGTQYTVIPRGDTQFKEGDQVYFITTEEGV
                     EEIFKLTGKVRDEIKDVMILGGSNIGCKTAFDLCQNKFNVKLIEHDKNKAFEIADDLP
                     NCLVINGDGRNVELLQEESIVDMDAFIAVTGNSETNIMSCLVAKSKGVKKTIALVENM
                     DYFQLSHSIGIDTLINKKLLAANHIFRHIRQGEVVAMTRLNNMNAELLEFVVSPSSKV
                     CDKRIKDLDFPRSAIIGGVVRDQVGLIALGDFKIQSGDRVVVCCMPQSIKKVENLFI"
     gene            3575..5080
                     /locus_tag="DHV98_03870"
     CDS             3575..5080
                     /locus_tag="DHV98_03870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HCK05505.1"
                     /translation="MPGFSKLNFKLIGHLIGLLFLVNGGFIFLSTVVSFLYHDGVGWQ
                     MFQSGAVALALGGLVMVLTRNHRKEIQKKEGYIIVAMGWFFMALIGTLPYLFTASIPN
                     FTDAFFETMSGFTTTGASIVHDIEALPQGILFWRSITHWIGGMGIIVLAIAILPLLGI
                     GGMQLFAAEAPGPGGDKLHPRITDTAKRLWYIYVGYTLAETLLLWAAGMSFFDAINHS
                     LSTLSTGGFSTKNASVAYWNDQPMIQYIIMLFMFLAGTNFVLSYFAFKAKFSKIFRDE
                     EFKLYSMFIIGLTAIAVFFIFNYSDPATSTIAHPMVLGPFESALRHGLFQVLAVVTTT
                     GFVSADFTAWTPFLTIFFFGLMFLGGSAGSTSGGIKVVRHLIMIKNGVMEFKRTLHPN
                     AILPVRYNNKAVQQPIVFNVLGFFIMYMLSFIVGVLVFSFLGLDFETALGGAASTLGN
                     VGPALGDLGPAMNFESLGPGARWWASFLMLIGRLELFTVLILFTPFFWRNR"
     gene            complement(5178..6077)
                     /locus_tag="DHV98_03875"
     CDS             complement(5178..6077)
                     /locus_tag="DHV98_03875"
                     /inference="COORDINATES: protein motif:HMM:PF00691.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05506.1"
                     /translation="MCLKRSFLWISLTLFWSLSLMGQDKEIQFNIYFEHDKYLLNPEQ
                     QTRLDSLIALPNKERYDLHIKGFTNEIGSAKYNLELSRKRAEHVKQLMRAFTIISSIG
                     QGELGGESAANRRVEIIFHPKSMHVAMDGEIIEPPIVTQPTIDLSQRFTMPKIGERIA
                     LDGILFYPDQDVIMDQSKEVLEQLVSLLKTHRGLKFKIMGHICCGDPERPAMDVINTR
                     TGQQDLSYARARSVYLYLLKKGISRKRMRFMGMAYRFPTGFGDEFDRRVEIEITGINE
                     PTETDTEMFESTSNPKKLDSIEH"
     gene            complement(6250..7423)
                     /locus_tag="DHV98_03880"
                     /pseudo
     CDS             complement(6250..7423)
                     /locus_tag="DHV98_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781291.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
     assembly_gap    6587..6607
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    7515..7590
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7591..8729)
                     /locus_tag="DHV98_03885"
     CDS             complement(<7591..8729)
                     /locus_tag="DHV98_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase"
                     /protein_id="HCK05507.1"
                     /translation="MNPKLSDRVNEMATSATLAMAAKARSLKEEGVSIIGLSLGEPDF
                     TVPEFVKEAAIKAIEADYHSYSPVDGYAELKKAIAHKFKRDNNLVYGPDQIVVSTGAK
                     QSLANLAQVLLNPGDEVILPAPYWVSYADIAKVAGGVPVEIKTSIATDFKITPEDLRQ
                     AITAKTKMMIYSSPCNPSGSVYSKAELRALADVLVDHPDLIIVSDEIYEHINFSGSHF
                     SMAEFDDMYDRTVTVNGVSKAFSMTGWRIGYIGGPSYIARACNKMQGQVTSGANCIAQ
                     IATVKALETPPSAIQYMVDAFRERRSLILSLLADIPGFKTNVPEGAFYVFPDISYYIG
                     RTLKGQKISSAGDFALFLLEHAGVATVTGEAFGDPDCIRISYAAS"
     gene            complement(8736..>9054)
                     /locus_tag="DHV98_03890"
     CDS             complement(8736..>9054)
                     /locus_tag="DHV98_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HCK05508.1"
                     /translation="IEDTAMPLPDETGTMKNTWAIHQLFTTVNFSTKNGLINWFTGGL
                     NHQVEHHIFPNISHIHYTKIATIVKKTAQEFNLPYHEYRTTRAAIAAHFRHLKHMGMK
                     PAM"
     assembly_gap    9055..9187
                     /estimated_length=133
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9188..9955)
                     /locus_tag="DHV98_03895"
     CDS             complement(<9188..9955)
                     /locus_tag="DHV98_03895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA desaturase"
                     /protein_id="HCK05509.1"
                     /translation="MGHTTIKFPRADKAQFFKTLNRRVNEYFKENNLSKSGDWHLHLK
                     TIIMFGLYLGPYVLLWTLPMSGWLQLFLSILMGVGMAGVGMNVMHDANHGAYSNVSWI
                     NKLLGSSIYILAGNVYNWQVQHNVLHHTYTNIHGHDEDLEAGRILRFSEHAPWKRFHK
                     FQHIYGVLFYGLLTINWAITADFMQTQRYLKRKLSYGRFPNPWRQWAVLVATKILYAT
                     IWLVIPMLFFPMAWWQILIGFVVMHYTAGLILSVVFQL"
     gene            10080..>10578
                     /locus_tag="DHV98_03900"
     CDS             10080..>10578
                     /locus_tag="DHV98_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013926534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HCK05510.1"
                     /translation="MERLETYFPNLSDGQKDHFKALEGLYRYWNDQINVVSRKDIDAL
                     YERHVLHSLGIAKVVAFNKAARILDVGTGGGFPGIPLAILFPETEFVLVDSIGKKIKV
                     VHEVAQSLGLDNVSAFHKRAELTQGSYDFVVTRAVTKMEGLVAWTHQKIKKDSTHSIP
                     NGILAL"
BASE COUNT         2732 a         2091 c         2317 g         3054 t
ORIGIN      
        1 gctggctcgc tgtttttaag cagccaaaaa acaccgcatt ggatgaagcc tgctgggtgg
       61 tggccttgga cgatgttcaa gaccccggaa atatgggaac aattttacgc ctttgtgact
      121 ggtttggcat cagccatgtc gtttgttctt tagataccgt agatcggttt aatccgaaag
      181 ttgtgcaatc cagtatgggg tctatcgctc gcgttcaggt gcactatgtg tccttggacc
      241 agtggttgga cgcgcagacg aaaccgattt tcggtgccgt actcgatggc caatcgctta
      301 caaaagtcat ctggccaaag cagggggtct tacttatggg caatgaaggg caggggatac
      361 gtccccagcg ggcgcggtat atcacagatc atttgagtat ctccggggcg ccatccagag
      421 gtgcagagag tttaaacgtc gctatggcga cgggtatttt gcttcaccag tggcacttaa
      481 accaataacc atggtagggt attgcgtttt actgaaaagt aaagttgata aatacccctc
      541 tggttttcat cgaggcgata tttgaggtcc aaggactcag ggggtttcgg tcgcggacca
      601 attcatccga ggtggcgaac acgccgcgaa ttgacggaga aaacttaaaa taatacaggt
      661 tgaaatcaat accaaagccc aattcgtaat agcttgtatt tcgggtcatg cgaaactgtc
      721 cgaaataatt gtcttcgggg tttgtctcgt tacttcctaa attgatcgac ttcgaaatac
      781 caccgacgat aaacggctta aaattattca gtcgcttagt tgaaacttta agcagtaaag
      841 gtaaatgaac ataagtagat tttacttctc taaaataatc ggattcttct tcaatccggg
      901 gaaaggtaag gttgcgctgg gtaaaataaa tccccggttc aagacgaaga tttaaatagt
      961 cgtttatgcg tagatcccca attaagccca cattaaatcc tgcttgtggg gagacttcta
     1021 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntctca tcgtcaaatt gtcgattata
     1201 ggtgaattta aagtcgtagc tgttgaatcc taaaaagtaa ccccaggata agggacggct
     1261 gtcaaaagtc tccaaattag ccaggcgctc tttattaaat aactgaccat gagaaacttg
     1321 gaatacacac aagcaaatca caaaaacaat atggctatga aatgatctca ttttgtggct
     1381 cgataaatgg tagctacacc aaaagtttga gggttatggg gttggactat aaacccaatt
     1441 tctgccaaaa tattgttgaa ggcctgaccg tagggaaagg atgccgcgct gtcactcaga
     1501 taacgatagg ctgatttatc tttagaaaac catcggccaa tagttggcat gatccccttt
     1561 gaataaaaat gatatccttg tttgaaggga aatttttctg ggacagaggt ttcaagaata
     1621 accaataacc cagcaggctt caaaacacga aatatttctg ctaaaccatt ttctagatgc
     1681 tcaaaattgc gcacaccaaa ggaaaccgta atggcgtcaa agtaattgtc atcaaaaggt
     1741 agggcttcac tgtcgccttt cacaaagcgc agccgatcag cataagggag cccttggact
     1801 ttggctatag cttggttgag catgccttga gacaagtcga ggccgataat ttctttggcc
     1861 ttagtttttt tggcaaaggc tatggctaaa tcacctgttc ctgtggcaat atcaaggagt
     1921 gtctccccgg aatgctcggc cacatagcgc accactttct tacgccattg taaatccgca
     1981 ccaaaggaaa tgacacgatt taattgatcg tattctccgg aaatagtgtc gaacatttgt
     2041 tcgacttgcg cttttttatc taaagcggac gttttgtaag gttttatttt ttcggccata
     2101 taatgggggc aaaactaata tttttcattg aattcggcgg ttctttattc accgattata
     2161 aggggataaa tccttattgt actgcttatt ttgtattttt gtcccgcaag cgtttagact
     2221 tttctatgaa aattatcatt gcaggggcag gagaagtagg attccatcta gccaaattat
     2281 tgtcttttga atctcaagac attacactga tcgacactaa tcgcgattca cttaattatg
     2341 ccgataccca tttagatatc cgtgttattc gtggcgatgc gacctcgatc gcggtgctta
     2401 aggaagctca aataggcaag accgatctgg ttatcggggt aacctctagt gaaaccacaa
     2461 atatcaccgc ctgtgtttta gccaaacaac tcggcgccaa aagaacaatt gcccgtattg
     2521 ccaatactga atttatcgag cataaagatg aggtaggctt tacaaaattt ggtattgatg
     2581 aattgatttc tccagaggct ttagccgcta cggaaattga attactgctc aatcaaagtg
     2641 cttttaacga tacctacgag tttgaagacg gggcgttaac tatgattgga cttcaccttt
     2701 cgcgcaccgc cgcttttgtt gggcggaccg taaaagaggt tggtttgatt tatcccgagt
     2761 tacaatacgt gccgattgcc attcaaagat ttgggactca atacaccgtt attccccggg
     2821 gagacaccca atttaaagag ggggaccagg tctactttat cacgaccgaa gaaggggttg
     2881 aggaaatttt taaacttaca ggaaaggtcc gagatgagat taaggacgta atgattcttg
     2941 gggggagtaa tatcggttgt aaaaccgctt tcgatttatg tcaaaataaa ttcaatgtaa
     3001 aactcattga acacgataag aataaggctt ttgagattgc agacgactta ccaaattgtt
     3061 tggtaatcaa tggcgatggc cgcaatgtgg aacttttaca agaggaatcc attgttgata
     3121 tggatgcctt tattgccgta accggcaata gcgaaacgaa cataatgtct tgtttggtcg
     3181 ctaaatctaa aggggtcaaa aaaacgattg ccttggttga aaacatggat tattttcaac
     3241 tctctcattc tatcggtatc gacaccttaa tcaataaaaa acttctggca gcaaaccata
     3301 ttttcagaca tattcgtcaa ggggaggtgg tcgcaatgac gcgactgaac aatatgaatg
     3361 ccgagttgtt ggaatttgtg gtttctccgt catcaaaggt ttgtgacaag cgcatcaagg
     3421 atttggattt tcctcgttca gcgattatag gcggggtagt gcgcgatcaa gtgggattga
     3481 ttgctttggg tgatttcaaa attcagagcg gcgatcgtgt tgtggtctgt tgtatgcctc
     3541 aatccatcaa aaaggtggaa aatttattta tctaatgcct ggattttcaa aattgaactt
     3601 caaactgatc ggtcatttaa ttggactgct ctttttggta aacggcggct tcatttttct
     3661 gtctaccgtt gtgagttttc tttatcatga tggcgtgggc tggcaaatgt ttcaatctgg
     3721 ggcagtagct ctggccttag gcggtctggt catggtcctc acccgaaatc accgtaaaga
     3781 aatccagaaa aaagaggggt atattattgt ggctatgggc tggtttttta tggccctgat
     3841 cggtacgttg ccttatttgt ttaccgcctc tattccgaat tttacggatg ccttttttga
     3901 aacgatgagt ggatttacca ccactggggc tagtatcgtc catgatatag aggccttacc
     3961 gcaaggtatc ttattttggc gcagcatcac ccattggata ggagggatgg gaattatcgt
     4021 tttggctatt gccattttgc cccttcttgg catagggggc atgcagcttt ttgcggccga
     4081 ggcccctggt ccgggcgggg ataagttgca tccgagaatt accgatacag ccaagcgcct
     4141 ttggtatatt tatgtggggt atactcttgc tgaaactctg ctgctttggg ctgcaggaat
     4201 gagctttttt gacgcgatta atcactcgtt gagtaccttg agtactggag ggttttccac
     4261 caaaaatgcc agtgtggcct attggaatga ccagccaatg attcaatata ttattatgct
     4321 gtttatgttt ttggctggga ctaattttgt tttgagttat tttgctttta aggccaaatt
     4381 ctccaagatt tttcgggacg aagaattcaa gctttattca atgtttatta ttggattaac
     4441 cgctatagcc gtctttttta tttttaatta ttctgatcct gcaacatcga ctattgccca
     4501 tccgatggtt cttggtccat tcgagagtgc cctgcgccat ggtctgtttc aagtattggc
     4561 tgtggtcacg accacggggt ttgtctcggc tgattttacg gcttggacgc cttttctaac
     4621 gatatttttc tttggattga tgttcttagg tggctccgct gggtcaacct caggcggcat
     4681 taaggttgtg cggcatttaa tcatgattaa aaatggggtc atggagttta aacgaaccct
     4741 gcaccctaat gccatattgc cggtgcgtta caacaataaa gcagttcagc aacccatagt
     4801 ctttaatgtt ttaggctttt tcattatgta tatgctgtcc tttattgtgg gagttttagt
     4861 tttttcattt ttaggcctag actttgaaac agccctcggg ggtgccgcct ctactttggg
     4921 taatgttggc cctgctttgg gcgatttagg tccggcgatg aattttgaat ctttaggccc
     4981 tggtgcccga tggtgggcca gtttcttgat gcttattggt cgattggaac tctttacagt
     5041 acttatttta ttcaccccct tcttctggag aaatcgctag gattatcttt agaaaagagc
     5101 gtctgtctcg aatggccctt agatttattt ggggctaaaa aatagtcgtt ttctgggcgc
     5161 taaggaatcg ctttgagcta atgctcgatt gaatctagtt ttttgggatt tgatgttgat
     5221 tcgaacatct cggtgtcggt ttctgtgggc tcattaattc ccgtaatttc aatttctact
     5281 cggcgatcaa attcatcgcc aaatccggtg ggaaatctgt aggccatacc cataaatcgc
     5341 atccgttttc ggctgattcc ttttttgagt aggtatagat agacagagcg cgcgcgggca
     5401 taagataaat cttgttgtcc tgttcgtgta ttgatgacat ccattgctgg tcgttcagga
     5461 tccccacagc agatatgacc cataattttg aatttaaggc cgcgatgtgt tttgagtaaa
     5521 cttacgagtt gttcaagaac ttctttgctt tggtccataa tcacatcttg gtccggatag
     5581 aataaaatgc cgtcgagcgc tattctttcg ccgatcttgg gcatggtaaa ccgctgacta
     5641 aggtcaatcg ttggctgggt cactataggg ggctctataa tttccccgtc catggccacg
     5701 tgcatgcttt tgggatgaaa aataatctca acccttctgt tggctgccga ttctccgccc
     5761 aactctcctt gtccgatact cgaaataatg gtgaatgcgc gcattaattg tttgacgtgt
     5821 tctgcacgtt ttcgcgataa ttcgagattg tatttagccg acccgatttc attagtaaat
     5881 cctttgatat ggaggtcata acgttctttg ttcggaaggg cgattaggct gtccaagcgc
     5941 gtttgctgtt cagggttaag aaggtacttg tcgtgttcaa agtaaatgtt aaattgaatt
     6001 tccttgtctt gacccataag agatagggac caaaaaaggg tcaaagaaat ccataaaaag
     6061 cttcgtttaa ggcacatgaa aaaaccactt ggccccttaa agatacaact aaagcattga
     6121 cttgtaaaat actagagaag gctgtgccaa ggatttctac gcaaaaagtt ctcatcaact
     6181 ttttgaatat ttttcatatt gaacgggcgt acgtgcccta taacacagct ttgcgccatc
     6241 caatgaactt tattcctggc tcatgactct gattgattta gccaatgatt tggccttttg
     6301 tgccaggtct aaagcgtttt gatggggttg attagggtca ggactgacca ggattacacc
     6361 catccgccga ttaggacgag tgctgggctt tccaaaaata cgaatatcgg caaagggttg
     6421 atttgtaatg tttgccaagc cttcatattc tggtcgagtg ccgtttttct cagcgagaat
     6481 gactgaggag gcaccaggag cgaggaggtt tattcccccg acaggtaatc ctaaaatagc
     6541 ccgtaaatgg agttcaaatt cgtttagatt ttgtgtttgt gccaaannnn nnnnnnnnnn
     6601 nnnnnnntgg agataattct gaaaaataaa cttctgtgcc cgcaataaaa aactcaaccc
     6661 cccaaatccc gggcccaccc aaggttttgg taattttttc agccatttct tgagcttgct
     6721 tgagcacggt gtcgttcatc ggggcgggct gccagctttc acggtaatcg ccatcttctt
     6781 gacgatgccc aatcggggga cagaacaggg ttttaccctt attttgggtg agggtcagca
     6841 gcgttatttc gtaatcaaaa tggataaagc cttcgataat tacttcagac gcatctccac
     6901 gagccccttc ttgggcatag gtccaagcgg tttcgagttc ctctattttg cgtacggttg
     6961 attgtccttt cccacttgaa gacatcaagg gttttatcac acaaggaaag cctatattct
     7021 ttgcggcaaa caacaacttc tcaagtgaat ctgcataggc aaatggtgcg gttttcatcc
     7081 cgagttcggt tgcggctaaa tcgcgtattg ctttgcgatt catcgtataa ttggctgctt
     7141 tggcagaggg aataacgttg attccttggc gttcatagtc atagaaacgc tcagtgcgaa
     7201 tggcttctat ttcggggacg ataaaatccg gattgtgttt ggctacgata tgatcaagag
     7261 ccgagccgtc cagcatatta attacctcaa actcatgagc cacttgcatg gctggagcat
     7321 tggcgtaatt atctacggcg atgacgtatt gtcctaaacg ctgggctgca ataacaaatt
     7381 cctttcctaa ttctcctgaa cctaaaagca agatacgcgc cataacaatt ttctaaaagt
     7441 ggactaggct aatgcctctt ttatacgcct gatggcctct ttgatatcat tttcggaggc
     7501 agcataggaa attcnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn tcggaggcag cataggaaat tctgatacaa
     7621 tctggatctc caaaggcttc tcccgttaca gtggctacac cagcatgttc taaaagaaac
     7681 agggcaaaat cacccgcaga acttattttt tgccctttta gggtacgtcc aatgtaataa
     7741 gagatgtccg gaaatacgta aaaagcacct tctgggacat ttgttttaaa gcccggaata
     7801 tccgcaagta acgaaagtat aagactgcgt cgttctctga aggcatcaac catatattga
     7861 atagccgatg gtggtgtttc aagcgctttg acggtcgcta tttgcgcaat acaattcgcg
     7921 ccgctagtga cttggccttg cattttatta caggcgcgcg cgatgtaact tgggccgcca
     7981 atgtagccaa tacgccatcc ggtcattgaa aatgcctttg agaccccatt gaccgtcacg
     8041 gtgcggtcgt acatatcgtc aaattcggcc atagaaaaat ggcttccgct gaagttgata
     8101 tgctcataaa tctcatcact cacaataatg aggtcaggat gatcgaccaa cacatcagcc
     8161 aaggcacgca attccgcttt actatagacc gacccactcg ggttacaagg ggagctatag
     8221 atcatcattt tggtttttgc tgtaatggct tgacgcaagt cctcaggggt aattttaaaa
     8281 tcagtagcaa tggaggtctt aatttctacc ggcaccccgc cagcgacttt agcgatgtct
     8341 gcgtaactca cccaatacgg tgcgggaagg attacctcgt cacctgggtt taataggact
     8401 tgggctaaat tggctaaaga ttgtttcgct cctgtcgaaa ccacgatttg atctggacca
     8461 tagactaaat tattgtccct tttaaatttg tgcgcgatgg cttttttcaa ttcagcataa
     8521 ccatctacag gactgtatga atgatagtcc gcttcaatgg ccttaatggc tgcttctttt
     8581 acaaattccg gaaccgtaaa atcgggttct ccaagactta gcccaataat cgagactcct
     8641 tcttccttta aacttctagc ttttgctgcc atcgccaagg tggcagaggt cgccatttca
     8701 ttgacgcgat ctgataattt tggattcatg tttggttaca tagcgggttt catccccatg
     8761 tgttttaaat gtctaaaatg tgctgcaatg gccgctctag tcgttcgata ttcgtgataa
     8821 ggtaagttaa attcttgagc cgttttcttt acgatagtcg caatttttgt gtaatgtata
     8881 tggctaatat ttggaaagat atgatgttcc acttgatgat taagtccgcc tgtaaaccaa
     8941 ttgattaatc cattttttgt tgaaaaattg accgttgtaa ataactggtg aatggcccaa
     9001 gtgtttttca tcgtgcccgt ttcatcgggt aggggcatcg ctgtatcttc aatannnnnn
     9061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9181 nnnnnnngag ctgaaaaaca acgcttaata ttaggcctgc ggtatagtgc ataacgacaa
     9241 aaccaattaa aatttgccac caagccattg ggaaaaatag catagggatg accagccata
     9301 tcgtggcgta caaaatttta gtggccacta agaccgccca ttgacgccat ggattaggaa
     9361 atcgaccata agataatttg cgctttaaat aacgctgggt ttgcataaaa tctgcggtga
     9421 tggcccagtt tatggtcaaa agaccataaa acaaaacgcc gtaaatatgt tgaaatttgt
     9481 gaaaacgttt ccagggcgcg tgttctgaaa aacgtaaaat tcgacccgcc tctaggtctt
     9541 catcgtgccc atgaatgttt gtataagtat gatgaagtac gttgtgctgt acctgccaat
     9601 tgtagacgtt gcctgccaaa atataaatac tactcccgag cagcttattg atccagctta
     9661 cattagagta ggcgccatga ttggcatcgt gcatcacatt catgcccaca ccagccatac
     9721 caacccccat aagaatggac aagaaaagct ggagccagcc agacatagga agagtccaaa
     9781 gcaacacgta gggccctaaa taaagcccga acataatgat cgtctttaaa tgcaaatgcc
     9841 aatcgcctga tttagacaag ttattttctt taaaatattc gttaactctg cggtttaggg
     9901 ttttaaaaaa ttgtgccttg tccgctctcg gaaatttgat cgttgtatgc cccacaatat
     9961 gaagttgaaa ttaatttggt tcacaaataa tgtactaaaa taagcatctg agtcttaata
    10021 ctcagcctag aggaattaaa attatcaagg aagatgtatt tttgtggtta atatctatta
    10081 tggagcgcct tgaaacatat ttccccaatc taagcgatgg tcaaaaagat cattttaagg
    10141 ccttagaggg cctttatcgc tattggaatg atcagataaa tgttgtttca agaaaggaca
    10201 ttgatgccct ctatgagcgc catgtgcttc attcgttggg cattgccaaa gtcgttgcgt
    10261 tcaacaaggc tgcgcggata ttggatgtgg gtactggagg tggatttccg ggaattccat
    10321 tagcgatttt atttcctgaa accgaatttg ttttggtcga cagtattggt aaaaagataa
    10381 aagtggttca tgaagtggct caatcattgg gcttagacaa tgtatcggcc tttcataaaa
    10441 gagccgaatt gactcagggg tcctacgatt ttgtggtcac tagagcagtt acaaaaatgg
    10501 aaggtctagt ggcctggacg catcaaaaga taaagaagga ttctacccac agtataccca
    10561 acggaatact tgccctaa
//
LOCUS       DPUP01000113            3229 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11626,
            whole genome shotgun sequence.
ACCESSION   DPUP01000113 DPUP01000000
VERSION     DPUP01000113.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3229)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3229)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3229
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>803)
                     /locus_tag="DHV98_03905"
     CDS             complement(<1..>803)
                     /locus_tag="DHV98_03905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05511.1"
                     /translation="IMTHSFAQLSKKVCFAFSVAVIMVSCSGNDDSVPEVNVSVSDSA
                     LAAKSDGIFEATQHIVESGYNYIEEPGRMPNSIFGASCPDFEVNVEGTQVTLIVDFGP
                     SCQLLSGPEVSGRIVLEYGPRVGGLRTIDYVYQDFYFNGNQVTGGGQIIRDSENNNGN
                     PQSSLNENITVAFSGSSVTANRVGTRYVEWVTGVGSGTWIDNVYHIWGDWETTLSTGF
                     VRTGVVNPTSPLVRGLALCDYIVSGVMQINQENLSGTLDYGDGTCDATA"
     assembly_gap    804..929
                     /estimated_length=126
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1106..1252
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1283..1552
                     /locus_tag="DHV98_03910"
     CDS             1283..1552
                     /locus_tag="DHV98_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HCK05512.1"
                     /translation="MYLSSEKKQEIFKKHGKSVTDTGTAEGQIALFTYRIQHLTQHLK
                     RNHKDYNTERSLVKLVGKRRSLLDYLMKKDIMRYRAIVKELGLRK"
     gene            1767..>3229
                     /locus_tag="DHV98_03915"
     CDS             1767..>3229
                     /locus_tag="DHV98_03915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HCK05513.1"
                     /translation="MIPKVFKEVIDLGDGRQITLETGKLAKQAHGSVVVQSGKCMLLC
                     TVVSNYQQSDVDFLPLTVDYREKFAASGRYPGGFFKREARPSDGEVLTMRLVDRVLRP
                     LFPKDYHAETQVMIQLMSHDEEVMPDALAGLAASAAIQLSDFPFECPISEVRVGRVNG
                     EFIINPSRAQLEESDIDMVIGASADSVMMVEGEMNEISEEEMTEAIKAAHEAIKVQCA
                     AQVRLAEAVGKKPTREYAGEREDEALAQRIHDMVYDKVYQVAQSGSSKQERSAAFGAI
                     KEEVKASFSEEELADYGSMISKYYSKAEKEAVRDLTLNEGLRLDGRKTTDIRPIWCEV
                     DYLPSTHGSAIFTRGETQALATVTLGTSREANQIDMPSFEGEETFYLHYNFPPFSTGE
                     ARPIRGTSRREVGHGNLAQRALKGMIPADCPYTVRVVSEVLESNGSSSMATVCSGTMA
                     LMDAGVQMKKPVSGIAMGLISGNDGKYAVLSDILGDE"
BASE COUNT          902 a          647 c          623 g          784 t
ORIGIN      
        1 agctgtggca tcacaagttc cgtcgccata atcgagcgtt cctgaaagat tttcttggtt
       61 gatctgcatc actcccgaga cgatgtaatc acacaatgct aagccacgaa ccaatgggct
      121 tgtcgggttg acgactcctg tgcgcacaaa tccagtactt agggtagttt cccaatcacc
      181 ccagatatgg taaacattat caatccatgt cccagaaccg acacccgtta cccattctac
      241 atagcgcgta cccactctgt tcgcggtaac actgctccca ctaaaggcaa ccgtaatatt
      301 ttcattaaga ctggactgag gattaccgtt attgttttct gaatctctaa tgatttgtcc
      361 cccaccggta acttgattcc cattgaagta aaaatcctga tatacataat ctatggtccg
      421 taacccgccg actctcggac catactcaag aacaattcga cccgacacct ccggtccact
      481 gagcaattga catgatggac caaaatcaac gatcagggta acttgcgtgc cctcaacatt
      541 aacctcaaag tctggacagg acgcaccaaa aattgaattg ggcatacgtc cgggttcttc
      601 tatatagtta tatccactct ctacgatgtg ttgtgtggcc tcaaaaatac catcggactt
      661 ggccgccaag gccgaatcac tcacggaaac attcacctcc ggcacactat cgtcattacc
      721 tgagcaagaa accataataa ccgccaccga aaaggcaaaa caaactttct tagagagctg
      781 agcaaaggaa tgagtcataa ttannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tcataattaa aggtagaatt tataggttac
      961 agtcacaatt ggtcaccaac ggacccgttt ttaatgggca atgattgatt ttattacaat
     1021 tatacagaaa aaaataattc aattttgtat tttcgcggct cgataatcac gaggttatca
     1081 acatacataa aaatcattta aataannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnatacataa
     1261 aaatcattta aataatattg gcatgtattt atcatctgag aaaaaacaag aaatttttaa
     1321 aaaacacggc aaaagtgtta ccgacaccgg tactgccgaa ggccaaatcg ctcttttcac
     1381 ctaccgaatt cagcatttga cccagcacct aaaacgcaat cacaaagatt ataacacaga
     1441 gcgctcacta gtaaaactcg tcggtaaaag acgatctcta ctcgattatc taatgaaaaa
     1501 agatattatg cgctaccgtg ctatagtcaa agaactaggc ctacgtaaat aaattaaaaa
     1561 gggataccgc tggtatccct tttgtttttg cattcttaag aattatagcc tagctttgat
     1621 tgatcttaca gaatgtaaac aatgctaaaa aagctgaatt gagtttttca ttggttcgaa
     1681 acaacaccac aacaactcaa cctttggccg aaaatcggtc agcgaccaat taaaagcatc
     1741 atctaagatg cataaatgaa aaacaaatga tacctaaagt atttaaagag gttattgacc
     1801 tcggggatgg tcgtcagatc accctagaaa ctggaaaact agccaaacag gcccatggtt
     1861 ctgtagtggt tcagtctggt aaatgtatgt tgctttgtac tgtagtttct aactatcaac
     1921 aaagtgatgt tgactttttg cctttgactg tagattatcg cgagaaattc gcggcttcag
     1981 gacgttatcc tggaggattt tttaaacgtg aagcccgtcc aagtgatggt gaagtactca
     2041 ctatgcgtct tgtagaccgc gtgttgcgtc ctttgtttcc aaaagattac catgcagaaa
     2101 ctcaagttat gattcaattg atgtctcatg atgaagaggt aatgcctgat gctttggcag
     2161 gacttgcggc ctctgctgct attcaattat ctgatttccc ttttgaatgt cctatttcag
     2221 aggttcgtgt aggacgtgtt aatggtgaat ttatcattaa cccatctcgt gctcaacttg
     2281 aagaaagtga catcgatatg gtcatcggtg cctctgcaga ctctgtcatg atggtggaag
     2341 gagaaatgaa cgaaatttca gaagaggaaa tgaccgaggc cattaaagcc gctcacgagg
     2401 cgattaaggt tcaatgtgct gctcaggtgc gcctggctga agctgttggc aaaaaaccaa
     2461 ctcgtgaata tgccggcgaa cgtgaagatg aggctttagc ccaaagaatt cacgacatgg
     2521 tgtatgataa agtttatcag gtcgctcagt ctggatcaag taagcaagag cgcagcgctg
     2581 cctttggtgc catcaaagaa gaagttaaag cgagtttctc agaagaagaa ttagcggact
     2641 acggttctat gatctccaaa tactacagca aagcggaaaa agaggccgtg cgcgatttga
     2701 cccttaacga gggacttcgt ttggacggta gaaaaactac agatattcgc ccgatctggt
     2761 gtgaggtaga ttacctgcct tctacacacg gatctgcgat ttttacccgt ggagaaactc
     2821 aagccttggc aacggtaacc ctgggaacct ctcgagaggc caatcaaatt gatatgccct
     2881 catttgaagg tgaagagaca ttctatcttc actataattt ccctccgttc tcaaccggtg
     2941 aagcccgccc aattcgcggt acatcaagac gagaagtggg gcacggaaac cttgcccaac
     3001 gcgcattaaa aggaatgatc cctgcggatt gtccttatac ggtccgcgta gtttctgaag
     3061 tattagagag taatggaagc tcctctatgg caacggtttg tagtgggacc atggccctta
     3121 tggatgctgg tgtacaaatg aaaaaaccag tctctggaat cgctatgggt ctgatttctg
     3181 gaaatgacgg gaagtacgct gtattgtcag atatcttagg agatgaaga
//
LOCUS       DPUP01000114            7227 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15089,
            whole genome shotgun sequence.
ACCESSION   DPUP01000114 DPUP01000000
VERSION     DPUP01000114.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7227)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7227)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7227
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            76..375
                     /locus_tag="DHV98_03920"
     CDS             76..375
                     /locus_tag="DHV98_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009184735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05514.1"
                     /translation="MQLLKHQHPYVMSTAFSHIFQGGYAAGYYSYKWAEVLDADAFSL
                     FEERGIFDPQTAKSFAQNILSQGGTIDPMTLYEKFRGREPKNDALLKRAGLLPED"
     gene            complement(378..1148)
                     /locus_tag="DHV98_03925"
     CDS             complement(378..1148)
                     /locus_tag="DHV98_03925"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05515.1"
                     /translation="MFCLVLLTYRYAGIPADWNYLVFAFLGTIVAYSYIKNVPAQVSF
                     KSGVFLLLQRSPWWVHIMGIISVLLVATFSVVQQIGLVFFMILSLAYILPGPAKLAPF
                     RDYGAIKIVIVALVWSGVTVLLPLRLLHHISEKTLLLFLAQTLWIIVLTIPFEFRDSG
                     KDVLRHPTWPQKLGPLRTKILGTVLLMICAVIHLYLSVGPEIESDLLITFWGSPFLIT
                     LCLTCFGLLMAQSKQSYWYSAFWIEAIPIAWLLMTYFY"
     gene            1336..4201
                     /gene="gcvP"
                     /locus_tag="DHV98_03930"
                     /pseudo
     CDS             1336..4201
                     /gene="gcvP"
                     /locus_tag="DHV98_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519346.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase
                     (aminomethyl-transferring)"
     assembly_gap    3157..3220
                     /estimated_length=64
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4328..5404
                     /locus_tag="DHV98_03935"
     CDS             4328..5404
                     /locus_tag="DHV98_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
                     /protein_id="HCK05516.1"
                     /translation="MSVIITGTGSYIPSSVTSNDEFKDHRFFNEDGEQLSENNEVIIR
                     KFKAITGISERRYIKPHKVTSDIATFAANRAIENAGIDPESIDYIVVAHNYGDVPNGH
                     HQSDTVPSLASRVKHQLKIKNPRCVAYDILFGCPGWVEATIHCNAFMRGGMAKKCLVI
                     GAEALSRVVDQHDRDSMIYSDGAGAVILEHSSNQENCENQQGIIHHLTATYTLDEAHF
                     IYFGPSYNQEENSSRNYIKMYGRKIYEFAITRVPEAMKQCMEEAGQEIGQLKKVFIHQ
                     ANEKMDEAILARFYKLYGLTPPDGIMPLTINTLGNSSVATVPTLYDLVRRGELSGHEV
                     APGDLIMFASVGAGMNVNAILYQV"
     gene            5405..5976
                     /locus_tag="DHV98_03940"
                     /pseudo
     CDS             5405..5976
                     /locus_tag="DHV98_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753923.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
     assembly_gap    5610..5647
                     /estimated_length=38
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5982..6839
                     /locus_tag="DHV98_03945"
     CDS             5982..6839
                     /locus_tag="DHV98_03945"
                     /inference="COORDINATES: protein motif:HMM:PF00535.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05517.1"
                     /translation="MYCAVIMPVYNEAPNLNQVLQSFADQRVPVDLLVLVDDGSTDQS
                     PKILHQWAQEHSWIEFVPSDNKSKHAPGQKVVHAFNRGFDYLQNFAQKHSITLSLIGK
                     FDADVVLPDNYFAALKEAFAKNPKLGLASGLLYISKNNDWVYEQIAKKHKVRGPIKLY
                     RKTCFDQIGGLKPCLGWDSIDQWLVQFWGWEVQTFPELKVHHLKATGQVYKAGELSRQ
                     GSAFAHMGYGIWLSFLSLVKLSIYHKKPFLVCSGMKHYWQNRNTLMVTQAQAKFIRKR
                     LWNAILNNQ"
     gene            6890..>7227
                     /locus_tag="DHV98_03950"
     CDS             6890..>7227
                     /locus_tag="DHV98_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05518.1"
                     /translation="MRITFTQLIFLIALSLITGCKNEPSTKRVDRENTILLEDLKEEQ
                     GPTFEKGATPRNVILVIGDGTGINQISALQYYKDGKIHYEDFPIIGLSKISSTSLITD
                     SAAAATAMACG"
BASE COUNT         2158 a         1570 c         1576 g         1821 t
ORIGIN      
        1 gctcttccga tctatcatga cgggcaattt gactgacaag aagttgtggc ttttgagcgt
       61 catattttag cgccaatgca attgcttaaa caccagcacc cctatgtcat gagcactgct
      121 ttttcgcata tttttcaagg ggggtatgcc gcggggtact acagttataa atgggccgaa
      181 gtgctcgacg cggatgcctt ttcacttttt gaagagcgcg gaatttttga cccgcagacc
      241 gccaaaagtt ttgctcaaaa catactgagt cagggcggga ccatagatcc catgacgctt
      301 tatgaaaaat ttagagggcg agaaccaaaa aatgacgccc ttttaaagcg tgcggggttg
      361 ctcccggagg attaacctca ataaaagtag gtcattaata accaagcaat gggtatggcc
      421 tcaatccaaa aggcgctata ccagtaggac tgttttgatt gcgccataag cagtccaaaa
      481 caagtcaggc aaagggtaat caaaaaaggg ctgccccaaa aagtgatcaa taggtctgat
      541 tcaatttcag gaccgacact caagtaaaga tgaatcacag cacaaatcat caaaagaact
      601 gtccctaaaa tttttgtgcg caaggggcct agtttttgtg gccaagtggg atgacgcaat
      661 acgtcctttc cggaatctcg aaattcaaat gggatggtca atacaatgat ccacaaggtt
      721 tgagccaaaa aaagcagtag cgttttctca gaaatatggt gtaataacct caagggcagc
      781 aatacagtga ccccactcca aactaaggcc acaatgacta ttttaatcgc cccataatct
      841 cgaaatgggg ctaatttagc ggggcctggt aaaatataag ccaaactaag gatcatgaaa
      901 aaaacgagtc cgatttgctg aactacactg aaggtcgcga ctaaaagaac actgatgatc
      961 cccattatat gaacccacca tggacttctt tgcagcaaga gaaagactcc tgatttaaat
     1021 gagacttggg cgggcacatt ttttatatag gagtaggcaa caatagtccc taaaaacgca
     1081 aaaacgagat aattccaatc cgcgggaata ccggcgtatc tgtaggtcaa aagaaccaaa
     1141 caaaacacgg caaaagaaac gtgtatattg tgttctacgt attgtcttaa gcagcgtttg
     1201 aaagggctca tgaccaaata taggtaaatg ttagtaagta cgataagccg ttgaaaaata
     1261 gtcggaaaag tgctctttaa ttcgcctttt ttaaggacaa tttatcgtaa ttttggccaa
     1321 aaattaaggc atcttatgaa tacagattcg tttgcattac gccatatcgg cccacgtgaa
     1381 gaggaaattc aggaaatgtt acaggccatt ggcgctgagt caattgaaca actcattgat
     1441 cagacggtcc cgagggatat ccgacttaaa gaagcgctca acttggctcc tgctatgagc
     1501 gagtacgagt ttttaaatca cattcatgcc ttaggggcaa aaaacaaaat ctataaaacc
     1561 tatatcgggc ttggatatca caatacccat accccttcgg taatcaaacg gaatattctt
     1621 gaaaatccgg ggtggtatac ggcttacacg ccgtatcaag ccgaaatcgc tcaaggaaga
     1681 ctcgaggctt tgttgaacta tcaaacgctg attacagaac tcacgggcat ggagctggct
     1741 aatgcctcac tcctggatga gtctacggct gcagcagaag cgatgacctt gctgtttgct
     1801 gtccgggagc gagatcaaaa gaaaaatgat gtcgtccagt tttttgtcag cgaccaagtc
     1861 ttaccacaaa ccctgtctct acttgagaca agagctaccc ctctaggaat aaagcttgtg
     1921 gtagggcaag cagaaacctt cactttcggt gaagaatttt atggtgcgct actccagtac
     1981 ccgggaaagc agggacaaat tttagactta gaccccttta tccaaaaagc acaccgggcg
     2041 caaattaaag ttgctgttgc tgcagattta ctctcattag tcctgcttaa gtctccaggc
     2101 gcatgtgggg ctgatgtggt cgtgggaacg tctcaaagat ttggaattcc tcttggttat
     2161 ggcggtcctc atgcggggta ttttgccacg cgtgaggcat acaaacgcaa catccccggg
     2221 agaatcattg gtttgacaaa agatatggac gagcagccag cactgcgcat ggccttgcag
     2281 accagagagc agcacattaa gcgagataaa gccacttcaa atatttgtac tgcccaagta
     2341 ttactggccg ttatggccgg aatgtatgcc gtgtatcacg gtccacaagg cctaagatat
     2401 atcgccaata aggtccatga acatacgcta atacttgccg atggattaaa gcgcaatggt
     2461 tatcaactgg ttcacaatag tttttttgat accataaccg ttcgtgctca ccgcgatcaa
     2521 attgagccgc ttgccctttc caaggagata aacctgcgtt atcccgatca tgagcatgtg
     2581 agtatttcga taaacgaaac aaccaatgcc gaggatgttg cgcagctcat tagtttattt
     2641 acttcagaga caagagcaga agaaacaacc gttcctcttg aggaattcgg aattgccaat
     2701 agtctaagac gtccctttga ctatttaaaa caagaagtat tcaatcgcta ccacagcgaa
     2761 acagagctca tgcgttatat aaagcgtctt gagcgtaaag atctagccct taatcattcc
     2821 atgatctctt tgggttcatg caccatgaaa ctcaatgcag caacggaaat gctccccctt
     2881 agtgatccaa attgggccgg actgcatcct ctcgttccat tgaatcaagc acagggctat
     2941 caggaaatgt tgtcaaaact cgaagaacaa ttgaccgaaa ttacaggctt cgctgcaacc
     3001 tcgctgcagc caaactctgg agctcaagga gaatatgcag ggcttatggt cattcgcgcc
     3061 tatcaccgat cacgaggtga tcatcacaga aatatatgcc tgattccctc atcggcccat
     3121 ggaaccaatc cggcgagtgc ggttatggca ggaatgnnnn nnnnnnnnnn nnnnnnnnnn
     3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn atcgatgtcg atgatttaag
     3241 agaaaaagca cttgcccata aagataattt ggccgcactc atggtaacct atccatcaac
     3301 ccatggggtt tatgaaagtg cgatcaaaga aattacttcc ataattcacg aatgtggcgg
     3361 tcaggtttat atggatggtg ccaatatgaa cgcacaggtt gccttgaccc atccaggagc
     3421 gattggcgct gatgtttgcc accttaattt gcacaagaca tttgccattc ctcacggagg
     3481 aggtggccca ggggttggtc caatttgcgt cgcaagtcaa ctggcgccat ttttaccctc
     3541 aaatccaatt atccccactg ggggagatca agccataacg gcaatctcag cagcgccttg
     3601 gggcagtgct ttggcatgcc ttatttctta tggctatatc tgcatgctcg gagagcctgg
     3661 tttgcgtaaa gctaccgaaa tcgcgattct caacgccaat tatatcaaag aaagactcaa
     3721 gggcgtttat gaaacactat acaccggaga acaagggcgt gcggcgcacg aaatgatact
     3781 cgactgcaga cccttcaagc aaaatgggat tgaagtcacc gatatcgcaa agcgactcat
     3841 ggattatgga ttccatgctc caacggtgtc atttcctgta gcgggaaccg taatggttga
     3901 gcccacagaa agtgaaacaa aggcagagct agatcgcttt tgcgaggcca tgatttcaat
     3961 tcgtcgggaa atagatgcag cccgtgcaga gcaaccgaat aatccgctta aaaatgcgcc
     4021 tcataccctg gccatgatta cggcagaaga ttgggctatg ccctactcgc gaggtgaagc
     4081 agcatttcca ttaccctatc ttatggacaa taaattttgg cctgcagtgc gccgtgtaga
     4141 tgatgcctac ggagacagaa atttaatttg tacttgtacc ccaatcgagg cttacgctta
     4201 aatccacaag tactcttctc gatgcggcac aggtgatcac cataaaccca aggtgtcttt
     4261 tgatagatca cgggaacctt tgggggtgaa aagccccttt tttggtatct ttagaaaaat
     4321 ttagtccatg agtgtaatta taacaggaac tggtagttat atcccaagca gcgttacctc
     4381 caacgatgag ttcaaggacc atcgtttttt taatgaggat ggggaacaat taagcgagaa
     4441 taacgaggtg atcattcgca aattcaaagc gatcaccgga atttcagaac gacgttatat
     4501 caagccacac aaagtaacct cagacattgc cacatttgct gcaaatcggg ctatagaaaa
     4561 tgcaggaatt gatcctgaat caatagacta cattgtcgtt gcccacaact atggggatgt
     4621 gcccaatggc catcaccaaa gtgacacggt accaagttta gcttcgcggg tcaaacatca
     4681 gcttaaaatt aaaaacccgc gctgtgttgc ctatgacatt ctatttggct gtcctggttg
     4741 ggtcgaagcg accattcact gtaatgcctt tatgcgcggt ggcatggcca aaaagtgttt
     4801 ggttattgga gcagaagcac tctcaagagt tgtagaccag cacgacagag attcaatgat
     4861 ttatagcgat ggtgcaggtg cagtgattct agagcatagc tctaatcaag aaaattgtga
     4921 aaatcagcaa ggtattatcc atcaccttac cgctacctat accctagacg aagcccactt
     4981 tatctatttt ggtccttctt ataatcaaga agaaaacagt tcgcgtaatt acataaaaat
     5041 gtacgggcgt aaaatctatg aattcgccat tacccgtgtg ccagaagcca tgaaacaatg
     5101 tatggaggag gcaggacaag agataggaca gcttaaaaaa gtcttcattc accaagccaa
     5161 tgaaaaaatg gatgaagcca tactcgcccg gttttacaag ctttatggac taaccccgcc
     5221 tgacgggatt atgcctctga ccattaacac attagggaat tcaagtgtcg ccacagttcc
     5281 cacgctttac gacctcgtgc gtcgaggtga gctcagtggt cacgaagtcg cgccaggcga
     5341 tttaatcatg tttgccagtg ttggcgcagg aatgaatgtc aatgctatcc tttatcaagt
     5401 ttaaatgtat tcaaaacatt ttccccacaa aagatatcgt atcactcagg aatttgttga
     5461 caaacacctt gatcactccg aaaaaatatt agatctaggt gtggacaatc ctttcagtga
     5521 gcgccttaga gaacaaggtt atagcgtaga caatacccaa ggggaggatt tggattttga
     5581 ccttagtgtg gttcaaaatg aagattatan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnatg aagattatga tgtggtgacc gcttttgaaa ttatcgaaca cttgctcaat
     5701 ccatttagtc tattaaacga aataaagtcg tcaaaactat tgatatcagt acccttgagg
     5761 ctttggttcg caaaagccta tcagagtaag acggacgagc gcgatcgcca ttttcacgaa
     5821 tttgaagcct ggcagtttag atggctattg gaaaaaacag gatggcgcat tatcgatgaa
     5881 gtccaattta ctaatcccgt caataagatt ggttttagac cccttctgcg tcgatttacg
     5941 ccacgctata tcttgattta tgcccaaaaa ccctagaggt tatgtactgt gccgtgatca
     6001 tgcctgttta taatgaagcc cctaacttaa atcaagtgct tcaaagcttt gcagaccaaa
     6061 gggtccccgt ggatcttttg gttctggtcg atgacgggtc cacggatcaa agccctaaaa
     6121 ttttacatca atgggcccag gaacattctt ggattgaatt cgttccttcc gataataaat
     6181 caaagcatgc cccgggccag aaagtcgtgc acgcctttaa ccgaggtttt gactatctac
     6241 agaactttgc tcaaaaacac tcaattaccc tgtccttaat cggcaaattt gatgcggacg
     6301 tggttttgcc tgacaactat tttgccgcac taaaagaggc ctttgccaaa aatcctaaac
     6361 ttggcttggc ctcaggtctt ttgtacatca gtaaaaataa tgattgggtt tatgaacaaa
     6421 ttgccaaaaa acacaaagtc cgcggaccaa ttaaattata tcgcaagact tgctttgatc
     6481 aaatcggcgg attaaaaccg tgcctagggt gggacagtat cgaccaatgg ttggttcagt
     6541 tttggggctg ggaggtacaa acatttcccg aattaaaagt gcaccattta aaggctacag
     6601 gtcaagtcta taaggcgggg gagctcagca gacagggcag cgcatttgcc catatgggct
     6661 acggaatttg gctcagcttt ttgtctctag taaaactaag catttaccat aaaaaaccat
     6721 ttcttgtttg ttcagggatg aagcattact ggcaaaatcg caataccctt atggtaacgc
     6781 aggcacaagc caaatttatc cgcaaaagat tgtggaatgc aatattaaat aatcaataac
     6841 tcatcgttta agcagtaaaa attcagggga caatatttaa atttgcctca tgagaataac
     6901 ctttactcaa ctcattttcc ttattgccct gagcttaatt acaggatgca aaaacgagcc
     6961 gtcaactaag cgcgtcgatc gagaaaacac aattctttta gaagacctaa aagaagaaca
     7021 gggacccact tttgaaaaag gggctacccc aagaaatgtc atcttggtca ttggggatgg
     7081 aacaggtatt aatcaaattt cagcactcca atattataaa gacggtaaga ttcattacga
     7141 agattttcct atcattggat tgagcaaaat aagttcgact tcattaatca ccgatagcgc
     7201 ggcagcagca accgctatgg cctgtgg
//
LOCUS       DPUP01000115           10068 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9259,
            whole genome shotgun sequence.
ACCESSION   DPUP01000115 DPUP01000000
VERSION     DPUP01000115.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10068)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10068)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10068
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(229..3000)
                     /locus_tag="DHV98_03955"
     CDS             complement(229..3000)
                     /locus_tag="DHV98_03955"
                     /inference="COORDINATES: protein motif:HMM:PF12705.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05519.1"
                     /translation="METFLSETIRELSKGSRPLSDYTLILPSKRAGGFLNQVLIEQTN
                     KVYFAPSVLSIEDFISQVSGIEIMNPTQVLLEGYKVYNALTPTAFNDYLLWAEPLLND
                     FNELDRNLVSPEAFFGYLSQIKAFERWELKEATPLIKDYLKFWEGLMPFYTAFTQHLL
                     SQGAAYQGLVYRQAAEDLSHYLNAIGDKPHAFIGFNALNPAEELLFQEMLAQGNCRIF
                     WDLDEFFAKDPQHSVSQFIREYFDRWPYYKTPQGLAKSSPEQEKPGHKSLSSITTNHY
                     RQAKTLHFVESDSDQGQIQALSALLKDISPDKASKTAIVLADESLLVPVLYAIPEAIN
                     HINITMGYPLKAYPGVWFVEALLQWHKSSNKRIHHNHLHKILTHPFGQLLLPSWQNIS
                     RWIQKNHQLFIDVEEIKGLTRASEVPVIELMFSNAAGEDNLLKNLMGLLSTLREHKQL
                     NAVDRIGIQKLLDLLQQLYGLARSYGFLDHIGAITALFDHLMATESLDFEGDAYRGLQ
                     IMGVLETRVLDFEHIIMLSVNEGVIPQGKSSASFITYDMKKEFGLPLHTDKDAIYGYH
                     FFRLMQRAKSVTFLYKNSQKGLSVGEPSRFLRLLELTAPSTHHISKTTALQEVAMTSA
                     PVATYEKTPDVMDELNEFVTRGLSPSSLGQYVRNPEEFYFRRILGLPEEQLMEDNIAA
                     NILGNVVHDAIKEMYAPMAGKTLVLSELKALKKQVDRVVMSHFDHKYNLRALAHGKNL
                     IVTQVVKSYCQQLIDWDCAALERGDTVELLEVETEHNLILSIPGINAPVKLRGVVDRL
                     DRCNGVLRVIDYKTGNVQPSDLNISDWAELTESHKKEKAFQLLTYAYMHFKDDQGFKS
                     MEQQTIAGILSFKNFGQGLMTYAFKPDRNKRLEEISLETLSLYQEQLFELIREIHNPE
                     IPFIARKES"
     gene            complement(3064..>4323)
                     /locus_tag="DHV98_03960"
     CDS             complement(3064..>4323)
                     /locus_tag="DHV98_03960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope biogenesis protein OmpA"
                     /protein_id="HCK05520.1"
                     /translation="VDAGRLPVMIGDAEVKGDLFDEFFNVTDHYNIVPAVTRVAAGRY
                     LGDGFTFNVAGTFNKITKLGDARTEDLVYYAADGGFNYSMRDQIGGPWLDPSLGVGGG
                     YTWVDEVGFGTLNATASLRFWVAENLAINFQSTFKHAMEDFGITHFQHSVGASFKFGG
                     KDTDGDGLYDNEDACPEVAGLPQFDGCPDSDGDGVEDRNDACVDVAGLAQFNGCPDTD
                     GDGIADPQDACPTEAGVAALNGCPDADGDGITDADDSCPNEAGPSSNGGCPFYDADGD
                     GVEDKNDQCPDIAGTVANNGCPEVTIEIINQLNEYSKTILFDTGKTSIRTESNDVIQD
                     MADVMSAYPNAMFEVEGHTDSVGSAINNQKLSEARAQSVHDALVALGIDDTRISYVGY
                     GEDRPVASNNTAAGRQENRRVEVSLKK"
     assembly_gap    4324..4421
                     /estimated_length=98
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4706..5908)
                     /gene="kbl"
                     /locus_tag="DHV98_03965"
     CDS             complement(4706..5908)
                     /gene="kbl"
                     /locus_tag="DHV98_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HCK05521.1"
                     /translation="MYGKIQHHLQQELEDIKAQGLFKKERVITGPQDAVIKISTGAEV
                     INFCSNNYLGLSSHPEVVQAAKDSLDSHGFGMSSVRFICGTQDIHKTLEQKIADFYQT
                     EDTILYAAAFDANGGVFEPLLGPEDAIISDSLNHASIIDGVRLCKAKRYRYQNNDMDD
                     LKAQLVQAKADGARFILVVTDGVFSMDGLVAPLDKICDLAEAFDALVMVDECHAAGFI
                     GPTGRGTLEEKGVMGRVDIITGTLGKALGGAMGGYTTGKREIIEILRQRSRPYLFSNS
                     LAPAIVGASIKVFDLLDKNTSLRDRLMANTAYFKKGMQEAGFDIVDGESAIVPVMLYD
                     AKLAQEMADLLLAEGIYVIGFFYPVVPKGKARIRVQLSAAHTQEHLDRAIQAFIKVKK
                     TIDSRGSN"
     gene            complement(5934..>7416)
                     /locus_tag="DHV98_03970"
     CDS             complement(5934..>7416)
                     /locus_tag="DHV98_03970"
                     /inference="COORDINATES: protein
                     motif:HMM:PF12705.5,HMM:PF13361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05522.1"
                     /translation="SELCVLARDNKTCSKIGAYLSERGFAVVSEEALLIQNNPVVLAL
                     INLGYLSANPYQRRPRARLGNFLFDTHKPKGSRMSFLSRMTQDALVEFHAVLTELDID
                     FELNKMAAMGLYDRFAYALNQFGWGLSDSTFVTQFMDWVFQYAKRPQATIWQLLAQWE
                     QDKDNLSLSSGTGQEAIQIMTIHKAKGLEFPVVILPYAHESFNPTKVGHVWYPFPEEG
                     FDYLPVRYSAHLAQYSPEGKDIDAQLRETYFFDTLNLYYVGTTRPTEELYVLCNKLGE
                     DSKSLSFNRLLKDFLTANGRWQEGLHKYAFGALPKIEANVKKSSKTLKAPLQIVTPEQ
                     HPISMVPERRASDYWFDVGIGFGSLFHELMALVIQAEDRLNALDQISLKYRLDPDQKQ
                     KAMGLVEQTVEHPELAYLYRGGHEVFVERSIITPRGVLRPDRINMIGQNQAVVLDYKT
                     GRAKPQDKDQIIAYGEGLKAMGIKVKAQLIVYLRQDPIVVNKI"
     assembly_gap    7417..7544
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7545..8436)
                     /locus_tag="DHV98_03975"
     CDS             complement(<7545..8436)
                     /locus_tag="DHV98_03975"
                     /inference="COORDINATES: protein motif:HMM:PF00580.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05523.1"
                     /translation="MQEVLDPKQTPNFERKWLLKILEPDPALGPRPTFYKKTAPAEVK
                     AAVDDLYDTVVETLVQIHRAHIQSIHLKNTLNQLVPLTVVEAIEKEFERIKKENNTLV
                     ISDFNKLLSEEIQSQPAPFIYERLGERFTHYFIDEFQDTSSLQWQNLLPLIQNNLAQA
                     DPKNPKHSLMIVGDPKQSIYRWRGGRPEQFIDLALGKSPDLQPPQIVSLDTNYRSHQD
                     IVSFNNALYTFAADYLPKKDHAALYAQGNAQNIHHKKSGFVAIEFLDKKDQEDDSKDQ
                     LYFARIEQIVSEQLDRGRSLS"
     gene            complement(8370..9233)
                     /locus_tag="DHV98_03980"
     CDS             complement(8370..9233)
                     /locus_tag="DHV98_03980"
                     /inference="COORDINATES: protein motif:HMM:PF00580.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05524.1"
                     /translation="MNQTKNFKAPFRVYNASAGSGKTFALTVAFLDKILRAKTDDAYK
                     KLLAITFTNKAVAEMKNRILNTLESFAKGEFEGAVLDLAQEILKGSNMTQPQLQAKSQ
                     DVLVHLLHHYAQFHVETIDRFNHRLLKTFSKDLKLSSNFEVSLETGVLLAEAVDALID
                     QAGRDPQITDLLVSFALNKTEDSKSWDIAFDLNKTAWMIVQENDAPYLARLKDIPLEQ
                     FIEFTQKLRERKQILDTLMREFARSLLDLCEVMGFCLITCLMVLLSRSCKKCLTLSKP
                     QILSANGCLKS"
     gene            9361..10042
                     /locus_tag="DHV98_03985"
                     /pseudo
     CDS             9361..10042
                     /locus_tag="DHV98_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002988118.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
     assembly_gap    9873..9923
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         2632 a         2187 c         2207 g         2765 t
ORIGIN      
        1 caatggccca tggattttgt ctgtcttgag cattgagact gaaaacacct gataatacaa
       61 gtgctgcagt aagtataatc gtttgaaatt tcatgtctga tattttttgc aaaattagcg
      121 caattttcta gaaatccgat aaaatacgtc ttttttcgat aaaatttaat attaaatcaa
      181 tacttcagtt ggaaatacac ctaaaatttt acaaatcagc acgttaattt aagattcctt
      241 acgggcaata aacgggatct caggattgtg tatctcgcga atgagttcaa aaagttgttc
      301 ttgatacagg cttaaagttt caagggagat ctcttctaag cgtttatttc ggtcgggctt
      361 gaaggcatag gtcatgagtc cttgaccaaa atttttaaag gaaagaatcc cagcgatagt
      421 ttgctgttcc atggacttaa atccttgatc atccttaaaa tgcatataag cgtaagtcaa
      481 aagctgaaaa gccttttctt ttttatgact ctctgtaagt tcggcccagt cactaatgtt
      541 taaatcactg ggttgaacat tacctgtttt ataatcaatc acgcgcagta cgccgttaca
      601 tcgatcaagg cggtctacca caccgcgcaa ttttacaggc gcattaattc ccggtatgct
      661 taaaatcaag ttatgctctg tttcaacctc taggagctcc acagtatccc cgcgctctaa
      721 agcggcgcaa tcccaatcaa tcaactgttg gcaataactt tttacgacct gggtgacaat
      781 gagattttta ccgtgagcca aagcacgtaa gttgtattta tggtcaaaat gactcatgac
      841 gactcggtca acttgttttt taagcgcttt taactcggaa agaaccaaag ttttcccggc
      901 cattggggcg tacatttctt taatggcatc atggactaca ttacccaaaa tgtttgcggc
      961 aatattgtct tccatgagtt gttcttcggg aagcccaagg atccgcctaa aataaaactc
     1021 ctcaggattt cggacatatt ggcctaagga cgacggcgaa agccctctgg tgacaaactc
     1081 attgagctcg tccattacgt caggggtttt ctcataggtt gcgacaggcg cagaagtcat
     1141 agcgacctcc tgaagggctg tggtcttgct aatatggtga gtgcttggtg ccgtaagctc
     1201 caagagtctt aaaaaacggc tgggttcacc cacgcttagt cccttctgac tgtttttata
     1261 caaaaaggtc acggactttg cgcgctgcat cagtcggaag aagtggtagc catagatggc
     1321 gtctttatcc gtatgtaagg gcagcccaaa ttcctttttc atgtcgtaag taatgaacga
     1381 agcactgctc tttccttgtg gaatcacccc ttcgttaact gagagcataa taatgtgttc
     1441 aaaatcaagg acccgagtct caaggacccc cataatttgc aggcctcgat acgcatctcc
     1501 ttcgaaatcc agtgattcag tggccatcaa atgatcaaac agcgcagtga tcgccccaat
     1561 atggtccaaa aagccatagc ttcttgctaa gccatagagt tgttgcaaaa gatccaataa
     1621 tttttgaata ccgatacgat cgacggcgtt gagttgtttg tgttcacgca aagtgctgag
     1681 cagccccatt aagtttttaa ggaggttatc ttcccctgcc gcattggaaa acataagctc
     1741 aataaccggc acctcagacg cccgcgtcaa ccctttgatc tcctcaacgt cgataaacag
     1801 ttggtgattc ttttgaatcc atcggctaat gttctgccac gaggggagca gtaactgccc
     1861 aaatggatgg gttaaaattt tatgcagatg attgtggtgg atccgtttat tagaagattt
     1921 gtgccattgc aagagtgctt caacaaacca aactccggga taggccttta gcggatagcc
     1981 catggtaatg ttgatatggt ttatggcctc ggggatggca taaagcaccg gaacaagtaa
     2041 agattcatcg gccagcacta tagccgtttt gctggctttg tctggggaaa tatcctttaa
     2101 taaagcagac aatgcttgga tttgcccttg atcgctatcg ctttctacaa aatggagtgt
     2161 tttggcttgt cgataatggt tcgtggttat ggaggacagg cttttatggc caggcttttc
     2221 ttgctctggg gaagatttag ccaaaccttg cggtgtctta taatagggcc agcgatcaaa
     2281 atattcacga atgaactgag agacactgtg ctgggggtcc ttggcaaaaa actcatctaa
     2341 atcccaaaaa atgcggcaat tgccttgagc aagcatttct tgaaatagaa gttcctccgc
     2401 gggattaagg gcattaaatc cgataaatgc gtggggctta tcgcctatgg cgtttaagta
     2461 atggcttaag tcttctgcag cttgacgata aacaagaccc tgataagcgg ccccctgact
     2521 taaaagatgc tgtgtaaaag ccgtataaaa aggcataagt ccttcccaaa atttcagata
     2581 gtctttgatc aggggcgtgg cctctttgag ttcccagcgc tcgaaagctt tgatctggct
     2641 cagataacca aaaaacgctt cgggagatac gagatttcgg tcaagttcat taaaatcatt
     2701 gagcaagggt tctgcccaga ggagatagtc attaaacgca gtaggcgtaa gggcgttata
     2761 aactttatat ccctcgagca atacttgggt agggttcata atttcaatcc ccgaaacttg
     2821 actgataaag tcctcaatac ttaaaacgct tggggcaaaa tagactttat tggtctgctc
     2881 aatcaggact tgattcagaa acccaccagc acgtttgctg ggcaatatta gggtgtaatc
     2941 cgaaagcggg cgggaccctt tactgagttc acggatggtt tctgaaagga aggtttccat
     3001 attcctaaaa taaaaaaacg cctccacaag ggaggcgttt tttcaatatt tatctgtgat
     3061 gaattatttc ttcaaagaaa cttctacacg acgattttct tgtcttccgg cagcagtatt
     3121 gttgctcgct actggacgat cttcaccgta tccaacataa gagatacgcg tatcatcgat
     3181 gccaagagca actagagcat cgtgtactga ttgagcacga gcttcagaaa gcttttggtt
     3241 gtttatagca ctaccaacac tgtccgtgtg gccttccact tcgaacatag cgttaggata
     3301 agcactcatt acgtcagcca tatcttgaat aacgtcattt gattctgtac ggattgaagt
     3361 ttttccagta tcgaaaagaa tcgtcttaga atattcattc aattggttaa taatttcaat
     3421 agtgacctct ggacatccat tgttggctac agtaccagcg atatctggac attggtcatt
     3481 tttgtcttct acaccatctc cgtcagcatc gtagaaagga catcctccgt tagagctagg
     3541 accagcttca tttggacaag agtcgtctgc atcagtgatt ccatcaccat ccgcatcagg
     3601 acatccgtta agtgcagcga caccagcttc agtaggacat gcgtcttgtg ggtcagcgat
     3661 tccatcacca tcagtgtcag gacatccgtt gaattgagcc aaaccagcta catcaacaca
     3721 ggcgtcgttg cgatcttcta caccgtcacc gtcagaatca ggacatccgt cgaattgagg
     3781 aagaccagca acttctggac aagcatcttc gttatcgtaa aggccatcac catcagtgtc
     3841 ttttccacca aatttaaatg acgcaccaac tgaatgttgg aaatgagtaa ttccgaaatc
     3901 ttccatagcg tgcttaaacg tactttggaa gttaatcgct aagttctcag caacccaaaa
     3961 acgaagactt gccgtggcgt taagtgttcc aaacccaact tcatcaaccc aggtataacc
     4021 cccaccaaca cctaaagatg gatccaacca aggcccaccg atttggtcgc gcattgagta
     4081 gttaaaacca ccatctgcag cataatagac taagtcttct gtgcgtgcat caccaagttt
     4141 ggtaatcttg ttaaaggtac ccgcaacatt aaatgtgaaa ccatctccta aataacgtcc
     4201 ggcagcaaca cgagttacag cgggaacaat gttgtagtgg tcagtgacgt taaaaaattc
     4261 gtcaaataaa tcacctttca cttctgcgtc accaatcatc acaggaagac gtcctgcatc
     4321 tacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn naccaatcat cacaggaagg
     4441 cgtcctgcat ctacagttcc aacagagtaa acatcaacgg cattgatgcc aatttctact
     4501 gcccaaggat tatttgcgtc ttgtgcattt gccacaccaa aggcgaagaa aacgcaggca
     4561 gcaactaaaa tacggttgag atgtttcata ttctaaaaag tttaattttt aagtgttatt
     4621 caagcaaaag taagttgtta aaatttatta acaaaatcaa atctagtaaa atttttgcaa
     4681 ttacctacca ttagcgggtt aaaagtcaat ttgaccccct agaatcgatg gtttttttga
     4741 ccttaataaa ggcctgaatt gcccgatcta aatgttcctg agtgtgggcc gctgagagtt
     4801 gtacgcggat cctggctttg cccttaggga ccacgggata gaagaagccg atcacgtaaa
     4861 ttccttcagc caggagcaga tctgccattt cttgagcgag cttagcgtcg tacagcatca
     4921 cggggactat ggcggattca ccatcaacga tatcaaatcc agcctcttgc attccttttt
     4981 tgaagtaggc cgtattggcc attaatcggt ctctcagact cgtgttttta tccagtaagt
     5041 caaaaacttt tattgaggcg ccgacaatgg cgggcgccaa agaattagag aacagatacg
     5101 gtctggagcg ttgacgtaaa atttcgatta tttcacgttt tccagtggtg tacccgccca
     5161 tagcaccgcc aagggctttg ccaagggttc cggtaattat gtctacgcgt cccatgacgc
     5221 ctttttcctc taatgtgcca cgaccagtag gcccaatgaa tccagcagcg tgacactcat
     5281 cgaccatgac taaggcgtca aaggcttcgg ccaaatcaca aattttgtcc agaggcgcca
     5341 ctaacccatc catcgaaaaa accccgtccg taacgacgag gatgaaccgc gcgccatcgg
     5401 ctttggcctg cacgagttgt gcctttagat cgtccatgtc attgttttga tagcgatagc
     5461 gcttggcttt gcacaaacga acgccatcga tgatggaggc gtgatttaag ctgtctgaga
     5521 tgatggcatc ttcggggcct aaaagcggct cgaagactcc gccgttggcg tcaaatgctg
     5581 ccgcgtaaag aatggtgtct tcggtctggt agaaatccgc aatcttttgt tcgagtgttt
     5641 tgtggatgtc ttgtgttccg cagataaagc gcaccgagga catcccaaat ccgtgagagt
     5701 caaggctgtc ttttgcagcc tgaacaactt caggatgaga cgataagccc aaatagttat
     5761 tggaacaaaa attaatcact tcagcgccag tcgatatttt gatgaccgca tcttgtggcc
     5821 ctgtaatgac gcgctctttt ttgaataagc cttgcgcttt gatgtcttct aattcttgct
     5881 gtaaatggtg ttgaatttta ccgtacatgt cgttagtttt tttccccgct aaattaaatt
     5941 ttatttacaa ctattgggtc ctggcgaaga taaacaataa gctgtgcttt gaccttgatc
     6001 cccattgcct ttagtccttc accgtaggcg attatttgat ctttatcctg tggttttgcc
     6061 cgccctgttt tatagtccaa gacgaccgct tggttttggc cgatcatatt gatccggtct
     6121 ggacgcaaaa cgccgcgggg tgtgatgatg ctgcgttcca caaatacttc gtggcctccc
     6181 cggtacaaat acgccaattc tgggtgttct acggtttgtt ccaccagacc catggctttt
     6241 tgtttttgat cgggatctaa acggtatttt agactaattt gatccagggc atttaggcga
     6301 tcctctgcct gaatgaccaa agccatcagc tcgtgaaaaa gtgagccaaa gccaatgcca
     6361 acatcaaacc aataatcact ggcgcgtcgc tcaggaacca tgctgattgg atgttgttca
     6421 ggcgtcacga tctgtaaagg ggcttttagg gtcttggacg attttttaac attggcctca
     6481 atttttggaa gggccccgaa tgcgtatttg tgaaggccct cttgccagcg cccgttggcc
     6541 gttaagaaat cttttaaaag gcgattaaag ctcaaggatt tcgaatcctc accgagttta
     6601 ttgcacaaga cgtaaagctc ttctgtgggg cgggtcgtcc cgacataata gaggtttagg
     6661 gtgtcaaaga aataagtttc cctgagttgc gcatcaatgt cttttccttc gggactgtac
     6721 tgagccaaat gcgcgctata gcgcacaggc aggtagtcaa atccctcttc tgggaaggga
     6781 taccaaacgt gacccacttt ggtcgggtta aaggactcgt gggcataagg taaaatgact
     6841 acgggaaact ctagtccttt cgccttgtga atggtcataa tttgaatggc ttcctgtccc
     6901 gtccctgagc taagacttaa gttgtcttta tcttgctccc attgggccag gagctgccaa
     6961 attgtggcct gcggacgttt agcgtattga aatacccagt ccataaattg ggtaacaaaa
     7021 gtgctgtcac tcagtcccca accgaattga ttcaaggcgt aggcaaaacg gtcgtaaagc
     7081 cccatagcag ccattttatt gagttcgaaa tcaatatcga gctcggtcaa tacggcgtga
     7141 aattcgacca aggcatcctg ggtcatccga cttaagaacg acattctgct gcctttaggt
     7201 ttatgggtgt cgaacaagaa attacccaga cgcgcccgtg ggcgcctttg ataaggattg
     7261 gcactgagat accctaaatt aatcagcgcc aaaactaccg ggttgttttg aatgagcaag
     7321 gcctcttctg aaaccaccgc aaaacctcgc tctgaaagat aagccccaat ttttgaacat
     7381 gttttattgt cacgggccaa aacacagagt tcgctannnn nnnnnnnnnn nnnnnnnnnn
     7441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncgctaa ggctgcgtcc
     7561 gcgatcgagt tgctcagaga caatctgctc gatgcgcgca aaatacagct ggtctttgga
     7621 atcgtcctct tgatcctttt tgtctaaaaa ttcaatggcg acaaatccac tttttttgtg
     7681 gtgaatattt tgagcattgc cttgcgcata gagtgcggca tggtcttttt tggggaggta
     7741 gtccgccgca aaagtataga gtgcattgtt aaacgaaacg atatcctgat ggctccggta
     7801 gttcgtgtct aaagacacaa tttgtggcgg ttgtaaatca ggacttttcc ctaaagcgag
     7861 gtcaataaat tgttccgggc gccccccacg ccagcggtag atggattgtt tggggtcccc
     7921 cacgatcatt aggctgtgtt ttggattttt ggggtctgct tgggctaaat tattctgaat
     7981 aagcgggagc aaattttgcc attgaagcga cgaggtgtcc tgaaattcgt caataaaata
     8041 atgggtgaac cgctctccta agcgttcata aataaaaggc gcaggctggc tttgaatttc
     8101 ttcactcagg agtttattaa aatcactgat caccagcgta ttattttctt tttttatgcg
     8161 ctcaaactct ttttcaatgg cttcgaccac cgttaagggg acgagttgat tcagggtgtt
     8221 ttttaagtga atgctctgaa tatgcgctct gtgaatctgg accagggtct caacaacggt
     8281 gtcataaaga tcatccactg cggccttgac ctctgcgggg gccgtttttt tgtaaaaggt
     8341 ggggcgaggt cccaaagcgg ggtctggctc taagatttta agcagccatt tgcgctcaaa
     8401 atttggggtt tgcttagggt caagcacttc ttgcatgacc ttgataaaag aaccataaga
     8461 caagtgatca aacaaaatcc catgacctca caaaggtcta atagggaacg tgcgaattca
     8521 cgcattaggg tatcgagaat ctgcttgcgt tctcttagtt tttgggtaaa ttcgataaac
     8581 tgctctagag ggatgtcttt gagccgcgcc agataagggg cgtcgttttc ttggacgatc
     8641 atccacgccg ttttgttgag gtcaaaggcg atatcccaag atttactgtc ctcggttttg
     8701 ttcaaggcaa aagacaccaa gaggtctgta atttgcggat cacgacccgc ctggtcgata
     8761 agggcatcga cggcctctgc gagcaagacg cctgtttcca gactcacctc aaaattactg
     8821 cttagcttaa ggtctttgga aaaggttttt agcaggcgat gattgaatcg atctattgtt
     8881 tcgacatgaa actgagcgta gtgatgcagt aagtggacca agacgtcttg actcttggct
     8941 tgtaactgcg gctgggtcat attgctgccc ttcaggatct cttgggctag atccaggaca
     9001 gccccttcaa attccccttt ggcaaaagat tcaagggtat tcaggatccg atttttcatc
     9061 tcggccacgg ccttattggt aaaggtaatg gccaaaagtt ttttataagc gtcgtcggtt
     9121 ttggcccgca agattttgtc caaaaaagca accgtcaaag caaaagtttt gccgctgcct
     9181 gcagaggcgt tgtatacccg aaaaggcgct ttgaaatttt ttgtttgatt catacttgcg
     9241 cctctaagat accattaaga ttttctataa ttaaataaac aagaacaaat tcggtaatgg
     9301 cccgtgctgg gatattattg ttaaatttgt ctcagtttta aacctttaaa tactacaatt
     9361 atggcttttg aattaccttc tttaccctac gcgcacgatg ctttggaacc caacatcgat
     9421 gcccgtacga tggaaataca tcacggaaaa caccacgcgg gctacacggc aaatttaaat
     9481 gcagctgttt ccggaacggc gcttgaaggc caagatatag aaactatttt gcgcggttgc
     9541 gacatgaata acaaagcgct acgcaacaat ggtggtggtt actacaatca caatttattt
     9601 tggcaagtta tgggaccaaa tggcggcgct gctcctgaag gggccttggc tgaggccatt
     9661 gacaaggcct ttggaagttt tgacgccttc aaagaggcct tttctcaagc agccaaaaca
     9721 caatttggct caggatgggc atggctttgt gttaaagcag atggttcatt agacgtttgt
     9781 gctacggcca atcaagacaa tccacttatg ccgggaatag gttgtggggg cacgcccata
     9841 ttaggtcttg atgtttggga acatgcctat tannnnnnnn nnnnnnnnnn nnnnnnnnnn
     9901 nnnnnnnnnn nnnnnnnnnn nnnatgtttg ggaacatgcc tattacttga actatcaaaa
     9961 cagacgtcct gattatgtta ctgcattttt caatgtgatc aattgggctg aagtttctgc
    10021 gcgttttgag gcggcaaaat aatacgccct ttttctaggg attgcttg
//
LOCUS       DPUP01000116            7037 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9155,
            whole genome shotgun sequence.
ACCESSION   DPUP01000116 DPUP01000000
VERSION     DPUP01000116.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7037)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7037)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7037
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            116..973
                     /locus_tag="DHV98_03990"
     CDS             116..973
                     /locus_tag="DHV98_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HCK05525.1"
                     /translation="MIYSMTGFGKSVRTLPGKKITIEIKSLNSKGLDLNARIPSALRE
                     KELVMRDRLAKALKRGKIDLSVYMESTGGERSAQLNTPVIQAYMAQLETLAQGPEIER
                     LQMALRLPESIQTERESIDEETAEVLMKGLDEAVLALEEFRAAEGAVLAEDFRSRINL
                     IRALLEKVKIQDKNRIPQVRARLLKAIQELEQSVDQNRFEQELVYYLEKYDITEETVR
                     LSNHLDYFEHTMASDESNGKKLGFITQEIGREINTIGSKANDADLQQLVVQMKDELEK
                     IKEQGLNVL"
     gene            973..1545
                     /locus_tag="DHV98_03995"
     CDS             973..1545
                     /locus_tag="DHV98_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HCK05526.1"
                     /translation="MPSRGKLIVFSAPSGSGKTTIVRALLQKPELNLAFSISATSREI
                     RGNEIHGKDYYFLSPEEFKNAIENNEFLEWEEVYPGQYYGTLKAEVDRLRDQGKNVVF
                     DIDVKGGMAIKKSFNTDVLALFVQPPSVAVLAERLTSRGTESAEKIKVRLNKAQQELA
                     FAPSFDHVLVNDELTVAIHKAKDLILNHIQ"
     gene            1550..>1838
                     /locus_tag="DHV98_04000"
     CDS             1550..>1838
                     /locus_tag="DHV98_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinic acid mononucleotide
                     adenylyltransferase"
                     /protein_id="HCK05527.1"
                     /translation="MGQSKTIGLYFGTFNPIHIGHLNIAHYFAHHSNLDEVWLVVTPE
                     NPLKNKQSLLADYHRAALVDIALEDYPRLKTSRVEFDLPQPNYTVNTLAVLQ"
     assembly_gap    1839..1919
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1962..2258
                     /locus_tag="DHV98_04005"
     CDS             1962..2258
                     /locus_tag="DHV98_04005"
                     /inference="COORDINATES: protein motif:HMM:PF01467.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05528.1"
                     /translation="MIMGEDNLQNLHKWKNYEWLLEHIPILVYPRISGREEGRSKTYH
                     QGHITQVKAPVFELSSTYIRKRIERGEDIRPMLPEKVWRYIDEMNFYKKKPPSL"
     gene            2461..3480
                     /locus_tag="DHV98_04010"
     CDS             2461..3480
                     /locus_tag="DHV98_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HCK05529.1"
                     /translation="MKQPKQPISFDYGVIGGGSWATAIVKMLCETQSQVGWYMRNTRA
                     IEHIRQEEHNPNYLSSVSFDPNQLWLSDDINEIVTQAKVVILAVPSAFLCSELEHLTI
                     PLSNKLVFSAIKGIVPESSLIVGAHLNEHYGLPMESIGVITGPCHAEEVALERLSYLT
                     IACAHKPNAKLVAQALSSSYIKCSVSDDIMGTEYAAVLKNIYALAAGIAHGLGYGDNF
                     QSVLMSNAIREMKRYVKSVHRMKRNINGSAYLGDLLVTGYSVFSRNRMFGTMIGKGYT
                     VKSAMMEMKMVAEGYYATKSAYNLNAEKGKRQSKTPIINAVYQVLYEGKSPKKVFAAL
                     TEKLD"
     gene            complement(3481..4500)
                     /locus_tag="DHV98_04015"
     CDS             complement(3481..4500)
                     /locus_tag="DHV98_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HCK05530.1"
                     /translation="MIDKINEHIAKVATFQGQTQEEIEAFRIAYLGKKGLLNEFFAAF
                     KEVPADQKKAFGQAVNALKNAAEQRVVDCKATLYQNETAHGAYGDLTRPGLPLNLGAR
                     HPISLVKNRIIDIFSRIGFNVSEGPEIEDDWHNFTALNLPEYHPARDMQDTFFIQTNP
                     DILLRTHTSSVQVRYMEEHQPPIRTISPGRVYRNEAISARSHCFFHQIEGLYVDKEVS
                     FADLKQTLAHFTTELFGTSKIRLRPSYFPFTEPSAEVDVYWGLETETDYKMTKGTGWL
                     EIMGCGMVDPNVLKNCGIDPEVYSGFAFGMGIDRIALLLHQIPDIRLLSENDLRFLEQ
                     FKSSF"
     gene            complement(4546..4902)
                     /locus_tag="DHV98_04020"
     CDS             complement(4546..4902)
                     /locus_tag="DHV98_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008465406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05531.1"
                     /translation="MSRDALLKQRWDHLVEQLSTQFSDGDPLDLDAIIYLVGVQELGQ
                     IHRKFKKDEKINLMHIAICKLLEPYGYYRFDFVDDQGWPHYQNVEPLPALKAGEQAVL
                     MKEAIVQYFLAQKLLD"
     gene            4970..5509
                     /locus_tag="DHV98_04025"
     CDS             4970..5509
                     /locus_tag="DHV98_04025"
                     /inference="COORDINATES: protein motif:HMM:PF02674.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05532.1"
                     /translation="MHLFDLLLLILLVLGFFWGLRKGLIQTLASLLALILGIYIALTF
                     TGDLAQLLTRWFDWSKKNADWVSFIVLFILTVMAVVTLGKWVTKIAGLIALGWINRLL
                     GAFLYTAQTALILSYVLWFFAQVQLDDYVLPENTKTESKTYSAIAGFAPTITPMIQDF
                     WASHWGQEQQKDPVNNSAQ"
     gene            complement(5512..6285)
                     /locus_tag="DHV98_04030"
     CDS             complement(5512..6285)
                     /locus_tag="DHV98_04030"
                     /inference="COORDINATES: protein motif:HMM:PF06347.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HCK05533.1"
                     /translation="MMARGLYLWVFILLFAAQNGHGQGQSDNWFDQGNQLYKNEQYNE
                     AILRWEAVIESGVHSAAIYYNMANAYYHLNDLASSIYYYEKALELSPGDGEIKANRAY
                     VQNALVDVIREQPKTLFQKWDEASAQLLSVNTWAWLGLFFMGLFVFVVIRFNWVETPA
                     AKRFSFVMSVLSIMLFAASIYLGVKTQSYKQKYRWAIVXVFAQEMSVRSGPRLSDEAL
                     FELHAGTKLRLLQTQDEWQEIELADGRRGWVSSQEIKAL"
     gene            complement(6282..7004)
                     /locus_tag="DHV98_04035"
     CDS             complement(6282..7004)
                     /locus_tag="DHV98_04035"
                     /inference="COORDINATES: protein motif:HMM:PF13584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05534.1"
                     /translation="MRGSVSEVYTLVPQNQGTYPLPLLSFSYFDPNLERYITKTTQDH
                     IVSVINGPAQESALQNNERADTNLVVVDTDRFSYIKLQSDWLARNPAPWFGTWAYWRW
                     VLGLLIFLPLWFVLSAIRNRYLGDTASRDLRKRKRLIAQYLSQAKAEQQNPTAFYAAL
                     ERSLHLFLKAQLKLETSGLSKENIRALMTQRTLTQDAIDRLIDLIERCERARYAPTTA
                     VDVQNDYNEAQEVIALINNTKR"
BASE COUNT         2050 a         1557 c         1471 g         1876 t
ORIGIN      
        1 attattgttg gcactgagcg gtatctggac cagcgctatg ataaaaaggg gcagccaaaa
       61 aatccaaccc ccaaagacta gattccttac ctttgtcagc caaagatggc ttgatatgat
      121 ttattcaatg actgggttcg gaaaaagtgt acgcacactt ccgggcaaaa aaataacaat
      181 cgaaatcaaa tcgcttaaca gcaagggttt ggatctcaat gcgcgcatcc caagtgcgct
      241 acgcgaaaaa gaactcgtga tgcgcgatcg gttagccaaa gcgctaaaac gcggtaaaat
      301 tgatttgtcc gtctatatgg aatccactgg tggggagcgt tcggcccaac taaacacacc
      361 cgtgattcaa gcctatatgg ctcaattaga aaccttggcc caaggccctg aaatagaacg
      421 tttacagatg gctttacgcc tgcccgaaag catacagacc gaacgcgaaa gcatcgatga
      481 agaaaccgct gaagtcttga tgaaggggct cgatgaagct gtattggctt tggaagagtt
      541 tcgcgccgca gaaggagcgg ttttggctga agatttccgc tcccgaatta acctcataag
      601 agcgctctta gaaaaggtca aaattcaaga taaaaataga atcccacagg tccgtgctcg
      661 cctgctcaaa gcgatccaag aattggagca gtcggtagac caaaatagat ttgagcaaga
      721 attggtttat tatctggaga aatacgacat cacagaagag accgtacgtc tgagcaatca
      781 cctggactat tttgagcaca ctatggcatc cgatgagtct aacggaaaaa aactcggttt
      841 tatcacccaa gaaattggcc gagagataaa cactattggc tccaaagcca atgatgccga
      901 tctgcaacaa ttagtggtgc agatgaaaga tgagctagag aagattaaag aacaaggatt
      961 aaacgtatta taatgccaag ccgcggcaaa ctcattgtat tttccgcccc atcaggcagt
     1021 gggaaaacca ccattgtccg agcccttttg caaaagccgg agctcaattt agccttcagt
     1081 atttcagcga catctcgcga aatacggggc aacgaaattc atggaaaaga ctattacttt
     1141 ttaagtcctg aggaatttaa gaacgctatt gaaaacaatg aatttcttga atgggaagaa
     1201 gtttatccgg gacaatatta cggaacccta aaagccgaag ttgatcgttt gcgcgaccaa
     1261 ggaaaaaacg ttgtttttga cattgatgtc aaaggcggca tggccataaa aaagagcttt
     1321 aacaccgatg tattggccct atttgtccag cctccaagtg tcgccgtact ggccgagcgc
     1381 ctaacaagtc gtggaacgga aagcgccgaa aaaattaagg tgcgtctcaa taaagcacaa
     1441 caagaattgg cttttgcgcc ttcctttgac cacgttttgg tcaatgatga actgaccgta
     1501 gcgatccata aggccaaaga tttaatttta aaccacattc aataaggcca tgggacaaag
     1561 taaaaccatc ggactttatt tcggcacttt taaccccata catatcgggc atttaaacat
     1621 tgcccattat tttgcccacc acagtaactt agacgaggtt tggctcgtcg tcactcctga
     1681 aaatcctctg aaaaacaaac aaagtctgtt ggctgactat catcgagcgg ctctggtaga
     1741 tattgcccta gaagattatc ctcggctgaa aacatcacgc gtagaatttg atttgcccca
     1801 acctaattat accgtaaata ctttggccgt attgcaagnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng
     1921 ctcttccgat ctaagaacaa aatccagagc atcgttttgc cttgatcatg ggcgaggata
     1981 atttacagaa tttacacaag tggaaaaatt atgagtggct gcttgagcat attcctattt
     2041 tggtgtatcc gagaatatca ggtcgtgaag aaggccgctc gaagacttat caccaaggcc
     2101 atattaccca ggtcaaagct cctgtttttg agctttcgtc cacttatatt cgcaagcgta
     2161 tcgagcgcgg ggaagacatc cgccccatgc tgcctgaaaa agtctggcgc tatattgatg
     2221 aaatgaattt ctacaaaaaa aaaccgccga gcctttaaaa agacccagcg gcactgctaa
     2281 ctaaataacc aaccaaaaaa attacttttt ttgcggctcc cgaaatgttc gagaaccaaa
     2341 catctatatc aataacggcc agtcgttttt caaattgtcg gtagaatcat aatctattgt
     2401 taaagtttat tttgaggcac aaaacccgtt tggattttca ggattcatta aattagtcgc
     2461 atgaagcaac ccaaacaacc aatatctttt gactatgggg tcattggcgg cggaagctgg
     2521 gccacagcca tcgttaaaat gctctgcgaa acccaaagtc aagtcgggtg gtatatgcgc
     2581 aatacccgag ccattgagca cattcgtcaa gaagagcaca atccgaatta tctgagctca
     2641 gtctcctttg atccaaatca actttggtta agtgatgata ttaatgaaat tgtgactcag
     2701 gctaaagtgg ttattttggc ggttccttct gcctttttat gcagtgaact agaacatctg
     2761 acgattccac tgagcaataa gcttgttttc tcagccataa aaggtattgt tccagaaagc
     2821 agtttgattg ttggcgcaca cctcaacgaa cattacggct tacctatgga gtctattggg
     2881 gtgattactg gaccctgtca tgctgaagag gtggcccttg agcgattgtc ctacctcacc
     2941 atagcctgtg cccataaacc aaacgccaaa ttagtggctc aggccttgag cagcagctat
     3001 atcaaatgtt cggtcagcga tgatattatg gggacggaat atgctgcagt gcttaaaaat
     3061 atttatgctc tagccgctgg aattgcccat ggcttaggtt atggggataa cttccaaagc
     3121 gttttaatga gtaacgcgat acgggaaatg aagcgttatg tgaaaagcgt gcaccgcatg
     3181 aaacgaaaca tcaacggttc ggcctactta ggggatctct tagtcactgg gtattcagtt
     3241 tttagtcgta atagaatgtt tggcaccatg attggcaaag gatacaccgt aaaaagtgcc
     3301 atgatggaaa tgaaaatggt cgcagaaggc tactacgcga caaaaagtgc ttataattta
     3361 aacgcagaaa aaggcaaaag gcaatccaaa acaccgatca taaacgccgt ttatcaagtg
     3421 ctttacgaag gaaaatcgcc taaaaaggtt tttgccgctt taacggaaaa actcgattga
     3481 ttaaaaactg cttttgaatt gttctaaaaa gcgcaaatca ttctcactga gcaatcgaat
     3541 gtcaggaatt tgatgaagta ataaagcaat acgatcgatc cccataccaa aggcaaatcc
     3601 agaataaact tcaggatcaa taccacaatt cttcaataca ttaggatcta ccataccgca
     3661 tcccataatc tctagccagc ctgttccttt ggtcatttta taatccgtct cagtttctaa
     3721 tccccagtag acatcgacct cagcactggg ctcagtaaaa ggaaaataag aaggtctcaa
     3781 gcgaatcttg gaggtgccga aaagctctgt tgtaaaatgc gctaaagtct gctttaaatc
     3841 agcaaagcta acctccttgt ccacataaag tccttcaatc tgatgaaaga aacaatgtga
     3901 tctagcggaa atcgcttcgt ttcgataaac gcgccccgga gatatcgtac ggatgggagg
     3961 ttgatgctct tccatatagc gtacctgaac cgatgaggtg tgggtgcgca atagaatatc
     4021 cggattggtc tgaataaaaa acgtgtcttg catatcccga gcagggtgat actcgggcaa
     4081 atttaacgcg gtaaaattat gccagtcatc ttcgatctca gggccttcag aaacattaaa
     4141 accaatgcgc gaaaaaatat caataattcg atttttaact aaggatattg ggtgtcttgc
     4201 ccctagattt agcggcaaac caggacgggt caaatccccg taggccccat gggctgtctc
     4261 attttgatat agggtggcct tacaatcaac aacgcgttgc tctgccgcat ttttcaaagc
     4321 gttaacggct tggccaaaag cctttttctg gtctgcaggc acctctttga aggccgcaaa
     4381 aaactcattt aataagcctt ttttacctaa ataagcgata cgaaaagctt caatttcttc
     4441 ctgagtttgc ccctgaaatg tagcgacttt ggcaatgtgt tcgtttattt tatcgatcat
     4501 cgataagcgt gtttgaaggc ataaaaatag ggattttatc ctgaattagt ccaggagctt
     4561 ttgggctaaa aaatactgga ctatagcctc tttcattaat accgcttgtt ctcctgcctt
     4621 taacgccggc agcggttcaa cgttttggta atggggccag ccttgatcat caacaaagtc
     4681 aaagcgataa tacccgtaag gttccagcaa tttgcaaatg gcaatatgca tgagattaat
     4741 tttctcgtcc ttcttaaatt tcctgtgtat ttgtcctaac tcttgcacgc caacgagata
     4801 gatgatggca tctaaatcta aaggatctcc atcagaaaat tgtgtgctca attgctcaac
     4861 caaatggtcc caacgctgtt ttaaaagggc atctcttgac ataagacaaa agtaagtcga
     4921 ataatcttca tttaccaaga aatcctatct ttacaagaca tctaaagcca tgcatttatt
     4981 tgacctctta ttgctgattc tcctggtttt gggctttttt tgggggcttc gaaaaggact
     5041 aattcaaacc ctagcatcac ttttggcgct catcttgggg atttatattg cgttgacctt
     5101 taccggcgac ttagcgcaat tattaacccg ttggtttgat tggtctaaaa agaatgcgga
     5161 ttgggtatcc tttatcgttt tgtttattct cacggttatg gctgtggtaa ccttgggtaa
     5221 atgggttaca aaaattgcgg gtttgattgc gcttgggtgg ataaaccgcc tccttggagc
     5281 cttcctttac accgcccaaa ccgccctgat cttaagctat gtcctctggt tttttgccca
     5341 agtgcaactc gatgattacg tcctgcccga aaacacaaaa acagaatcga aaacttattc
     5401 cgccattgct ggttttgccc cgaccataac cccgatgatt caagattttt gggccagtca
     5461 ctggggccaa gaacagcaga aggaccccgt caataattcg gcccaataga cctataaggc
     5521 cttaatttct tgggaagaca cccagccccg gcgcccatcg gcgagttcta tttcttgcca
     5581 ctcatcttga gtttgcaata gtcttagctt cgttcctgcg tgtaattcaa ataaggcttc
     5641 atcactcaat cttggtcctg aacgcacact catctcttgg gcaaatacnn atacaatcgc
     5701 ccagcgatat ttttgcttat aggattgcgt tttaacgcct aaataaattg acgcggcaaa
     5761 aagcattatc gacaaaacac tcattacgaa actgaatcgc ttcgctgcag gagtttcaac
     5821 ccaattaaat ctgatcacaa caaaaacaaa gagccccata aaaaatagcc ccaaccaagc
     5881 ccaagtattg accgaaagca attgagctga agcctcatcc catttctgaa ataaggtctt
     5941 aggctgttct cttatcacat cgacaagcgc attttgaaca taagccctat tggccttgat
     6001 ttccccatcc cccggcgaga gttcaagggc tttttcataa taataaatgc tcgaggccaa
     6061 atcattcaaa tgataataag cgttcgccat gttataataa atcgcagcac tatgtacccc
     6121 cgattctata accgcttccc aacgcaaaat ggcctcgttg tattgctcat ttttatagag
     6181 ttgattgccc tgatcaaacc aattatctga ctggccttga ccatggccat tttgcgcggc
     6241 aaaaagcaat ataaaaaccc ataaataaag tcctctagcc atcatctttt ggtgttgttt
     6301 atcaatgcaa ttacctcttg tgcttcattg taatcatttt gcacatccac ggctgtagtt
     6361 ggcgcatatc gcgcacgctc acagcgctcg atcaaatcga ttaatcgatc aattgcgtct
     6421 tgggtgagtg ttctctgggt cattagggcc cttatgtttt ctttggacag tccggaggtt
     6481 tctagcttca attgggcttt taaaaacagg tgtaaggatc gctccaaggc ggcgtaaaac
     6541 gccgtgggat tctgttgctc tgccttagct tgactcaggt actgagcaat taatcgcttg
     6601 cgctttctca agtctcgaga ggccgtgtct ccgagataac gatttcttat cgcgctgagc
     6661 acaaaccaca atggcaagaa aatcaataat cccaagaccc aacgccaata ggcccaagtg
     6721 ccaaaccaag gggcggggtt tctagcgagc caatctgatt gtaatttgat gtagctaaag
     6781 cgatccgtat ccacaacgac cagattggtg tcagcgcgct cattattttg cagcgcagat
     6841 tcttgagccg gaccgttaat cacagagact atatggtctt gggtggtttt ggtgatgtac
     6901 cgttcaagat tagggtcgaa atatgaaaaa ctaaggaggg gcaatggata agttccttga
     6961 ttttgtggca ctaatgtgta tacttcagaa actgagcccc gcattccgct ggttcgggtg
     7021 cttattttat catttcg
//
LOCUS       DPUP01000117            3180 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_41431,
            whole genome shotgun sequence.
ACCESSION   DPUP01000117 DPUP01000000
VERSION     DPUP01000117.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3180)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>639)
                     /locus_tag="DHV98_04040"
     CDS             complement(<1..>639)
                     /locus_tag="DHV98_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006795531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HCK05535.1"
                     /translation="HEIIYEADTTAGKWFDVILLLFILASVLFVMLESVRGLPEYWYV
                     FFVRAEWVITVLFTIEYILRIICINKPRHYIFSFYGLVDLVAIFPLYLSLFISGTAAL
                     ATLRALRLLRVFRILKITRYMKEGHRLKEALKLSKPKILVFLFTVLIVSMIAGTLMYL
                     VEGEESGFTSIPKGIYWCIVTLTTVGFGDITPATPLGQFIASIIMIMGYGIIA"
     assembly_gap    640..794
                     /estimated_length=155
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(917..>1598)
                     /locus_tag="DHV98_04045"
     CDS             complement(917..>1598)
                     /locus_tag="DHV98_04045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HCK05536.1"
                     /translation="DRKSKKLQLETADVQVERTGNELIALLKESEEIKLHKPLYNRSL
                     RRSLFRYQLTHFTDERGYINLKVEPSDRRKKSITTFTTFAQAKSVLFKITEQHELCQK
                     LNSLYQSKEACFLYSLEQCNGACVGEETPDEYNQRVMEFIVKNQYQSNDLLIIDKGRT
                     LEERSCILIEKGAFKGFGYYSLNFQIQNTNVLKSIIRPMQDNRDAQHIIQSYLRRHKV
                     LKVLNLND"
     assembly_gap    1599..1706
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1707..2411)
                     /locus_tag="DHV98_04050"
     CDS             complement(<1707..2411)
                     /locus_tag="DHV98_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008463088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease"
                     /protein_id="HCK05537.1"
                     /translation="MYAIVDIETTGGKFNEEGITEIAIYRHDGYQIVDQFISLVNPER
                     PIQAFVVSLTGINNSMLRQAPKFYEVAKRIVEMTQDAVLVAHNAQFDYRVLRTEFDRL
                     GYDFERKTLCTVELSKKLLPGHASYSLGKLVRALGIPISDRHRAQGDALATVKLFQML
                     IDRDIEKSIVQSSIRIDPKKQIEPKLLALIEQAPSEIGVYYLRNQEGKLIYIGKSKNI
                     KKRLTQHFTGQDRKSKK"
     gene            complement(2427..3089)
                     /locus_tag="DHV98_04055"
     CDS             complement(2427..3089)
                     /locus_tag="DHV98_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HCK05538.1"
                     /translation="MSDSISQNLQQLKSEISDNVTLVAVSKTKPNQAIMEAYTTGHRI
                     FGENKVQEMTQKWEELPRDIQWHMIGHLQTNKVKYIAPYVSLIHSLDRVKLANEIDRQ
                     GARYRRVIDCLIQIKIAKEEEKYGFDPKEALIFLEHLRTKPMENINIRGVMGMATFTH
                     DREQIKHEFSVLKSFFDQNKSAHNLEILSMGMSGDYPLALELGSNMIRVGSAIFGSRP
                     AH"
BASE COUNT          830 a          600 c          562 g          925 t
ORIGIN      
        1 cgcgatgatt ccatacccca tgatcataat aattgaggca ataaattgac ccagtggcgt
       61 ggcaggagtg atgtcgccaa aaccaaccgt agttaaggtg acgatacacc aatagatgcc
      121 ttttggtatg cttgtaaatc cactttcttc tccctcaaca aggtacataa gtgttcctgc
      181 aatcatggaa acaataagta cggtaaagag aaaaacaaga attttgggtt tggacaactt
      241 caaggcctcc tttaatcgat gtccctcctt catataacgc gttattttta aaattctaaa
      301 gacgcgaagc aaacgcaaag cccgcagtgt agccaaagct gcagttccgc taataaataa
      361 agaaaggtaa agcgggaaga tcgcaactaa atcaacgagg ccataaaaac taaagatata
      421 atgccggggt ttatttatac agatgattct taaaatgtat tcaatggtaa agagcacggt
      481 aatcacccat tctgctcgga caaagaaaac ataccaatat tccggtagcc ccctgacgct
      541 ctcaagcata acaaacaaga cactcgccag tataaaaagc aaaaggataa catcaaacca
      601 tttacccgca gtggtgtctg cttcataaat aatttcatgn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnngcttca taaataattt catgaagttt tttttgccat ggtctaagcg
      841 ttgatgggtt cataaagggg tgcttgcgtt cttaaaaata gtgaagattt ggaacatagg
      901 agggctctcg cataaatcaa tcatttagat taaggacctt taatacttta tgcctgcgta
      961 aataggactg aataatatgt tgtgcatctc tattgtcttg cattgggcgg ataatcgatt
     1021 ttaaaacgtt tgtgttctga atttgaaagt ttagcgaata atagccaaat cctttaaagg
     1081 ctcctttttc aatgagaatg caagaacgtt cttcaagagt acgccctttg tcaattatta
     1141 agagatcatt ggactgatat tgatttttta caatgaattc catgactctt tgattgtatt
     1201 catcgggagt ttcttccccg acacacgccc cattgcattg ctcaagacta tagagaaaac
     1261 aggcttcttt actctgataa agactattta atttttgaca aagctcatgt tgttctgtga
     1321 ttttgaacaa aacagatttt gcctgagcaa aagtggtgaa ggtagttatt gacttttttc
     1381 ttcggtcaga gggttcgacc ttaagattta tatacccacg ctcatcggta aaatgggtta
     1441 actggtatct gaataaagat cgtcttaatg atctgttata aagaggttta tgtagtttta
     1501 tttcttcact ttctttaagc aatgcgatga gctcatttcc agttcgctct acctgaacat
     1561 cggcggtttc taattgaagc ttcttgcttt ttcgatccnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnncttc ttgctttttc gatcctgtcc ggtaaagtgc
     1741 tgggtcaatc tttttttaat gtttttactc tttccgatat aaatcagttt accttcctga
     1801 ttgcgcagat aataaacacc aatctccgat ggtgcttgtt cgataagcgc caatagtttt
     1861 ggttcgattt gttttttggg gtcgatccga atcgaggatt gcacaatact cttttcgata
     1921 tctcgatcaa tgagcatctg aaataatttg accgtggcca aagcatctcc ttgtgcgcga
     1981 tgtcgatcac taatgggaat ccccagggca cgcacgagtt tacccagact atagctggca
     2041 tgaccgggca ataatttttt ggacaattct accgtacata aagtctttcg ttcaaagtca
     2101 tagcctaaac gatcgaactc tgtgcgcaga acacgataat caaattgtgc attatgggcg
     2161 actaaaaccg catcctgagt catttcgacg atacgctttg cgacctcata aaactttgga
     2221 gcctggcgca acatcgaatt attgatccct gtaagggaga cgacaaaggc ttgtattgga
     2281 cgctcgggat tgacaagact aataaattga tcgactattt ggtagccgtc gtgccgataa
     2341 atcgcaattt cagtaatgcc ttcttcgtta aattttcctc ctgtcgtttc tatgtcgact
     2401 attgcgtaca tgtttcgaga tcaagtttaa tgggctggcc ttgacccgaa tattgcactc
     2461 cctacacgaa tcatattgct ccccagttca agggccaaag gataatcgcc actcatgccc
     2521 atagataaaa tctcaagatt atgggccgat ttattttgat caaaaaagct ttttaaaact
     2581 gaaaactcgt gcttaatttg ttccctgtcg tgggtaaaag tcgccatgcc cataactcca
     2641 cgaatattaa tgttctccat aggttttgtc cttaagtgct ctaaaaagat taaggcctcc
     2701 ttgggatcaa aaccgtattt ctcttcctct ttagcaattt ttatttgaat gagacagtca
     2761 attacgcgtc gatagcgtgc gccttgtcgg tcgatttcat tggccaattt gacccgatct
     2821 aatgagtgta tcaatgaaac ataaggggcg atgtacttaa ccttattggt ttgtaagtgt
     2881 ccaatcatgt gccattgtat atctctgggg agttcttccc atttctgagt catttcttga
     2941 actttattct ccccaaaaat tcgatgccca gtcgtgtagg cctccatgat cgcttgattc
     3001 ggtttggttt tagaaaccgc aaccagagtc acattatcag aaatttcaga ttttaattgc
     3061 tgtagatttt gacttatcga atcactcata gttgtttatt aagcaaatcg agcagcgacc
     3121 ttttcagctt ttctgctttc gctgtagtca tagaatcctt ctttactttt taccccaagt
//
LOCUS       DPUP01000118            5092 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13649,
            whole genome shotgun sequence.
ACCESSION   DPUP01000118 DPUP01000000
VERSION     DPUP01000118.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5092)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5092)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5092
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..585
                     /locus_tag="DHV98_04060"
     CDS             <1..585
                     /locus_tag="DHV98_04060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HCK05539.1"
                     /translation="LNPELGERQVRWDFNMGYATTIIIGLSFILLGGLVMYGQGQEFS
                     NSGAIFANQLINMYTDSLGQWSKAFIGVAAFTTMFSTSLSTLDGSPRVMAKTSSLLFA
                     PGYQINYLAWLVILVIGSVLIYLGLTDQMGTLITVGTVLSFISAPFYALIIYRVVTGP
                     SLPKEHHPGLWVKIFSLLAIALLIGFSLWYLTTL"
     gene            673..1536
                     /gene="lipA"
                     /locus_tag="DHV98_04065"
     CDS             673..1536
                     /gene="lipA"
                     /locus_tag="DHV98_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002990415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HCK05540.1"
                     /translation="METLLTKPAPKPKWLRVKLPTGKKYTELRGLVDQYNLHTICTSG
                     SCPNMGECWTEGTATFMILGNICTRSCGFCGVKTGRPQDVDWDEPEKVARSIKLMNIK
                     HAVITSVDRDDLKDMGSIMWAETIKAIRRMNPETTLETLIPDFQGETKPLDRIIKVAP
                     EVVSHNMETVRRLTREVRIQAQYDRSLGVLAYLKDQGINRTKSGIMLGLGEREEEVIQ
                     TMTDLRQAKVDVVTLGQYLQPSKKHLPVKEFITPDQFKKYETIGLAMGFRHVESGALV
                     RSSYKAQKHIL"
     gene            2497..>3888
                     /locus_tag="DHV98_04070"
     CDS             2497..>3888
                     /locus_tag="DHV98_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HCK05541.1"
                     /translation="MRFEQKNDSLHQYYLNTILKTSSDNGDLASLNEIIDQQKSDLDR
                     QQRSISFSKITTGLSIALIVILSLLTLSLYKNNNLRAKANILLQDKNNELQVAKERAE
                     KASMVKAEFLSTITHELRTPMYAVTGLTHLLLEENPKPEQKEHLRSLQFSGEYLLNLI
                     NNILDLNKLEANKVEIEKTTFNLKRRLNDVLIALNKSAVDRKNNLRLEYDDEIPDKLE
                     GDSVKLSQILINLIGNSLKFTQNGDVIVRVKKLGDKNNKITLHFEIEDNGVGISKKKQ
                     KSIFESFSQASLQINRKFGGTGLGLSIVKSLLELMGSRIQLESQLGKGSKFWFDLVLD
                     ISAQGATEEDNAKQLNESEYSSLENRHILVVEDNKINLMITRKILEKRNIICQVADNG
                     MDAIKMVETNDFDVVLMDIHMPGISGIEATQEIRKFKPDLPIIALTAVTIEENIDEFF
                     RAGFSEIIPKPFKT"
     assembly_gap    3889..4002
                     /estimated_length=114
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4081..5091)
                     /gene="lpxK"
                     /locus_tag="DHV98_04075"
     CDS             complement(4081..5091)
                     /gene="lpxK"
                     /locus_tag="DHV98_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HCK05542.1"
                     /translation="MNIIAAPFSLLYGSVLALRNWAFDRGILPEHEFEIPIISVGNLS
                     VGGTGKSPMIEYLITLLSHEYKVGVVSRGYGRKTKGYLEVNPQHTAVEVGDEPLQFKR
                     KFPDIRVAVCANRVAAIKTLTAHCEIILLDDAYQHRYVRPAINILLTQYHKPYHKDKV
                     LPWGRLREWIKGARRADIVVVTKCPERLAYAHGQSLQIDLKLGEDQSFYATSIDYGGY
                     CIGPHQEIEIKDFAKLPFVLVTGIARPEPMVEKLKNLGARFEHFSYSDHHNFSEAEII
                     KLRQQDLILTTEKDFQRLGDRLEKRAIYYWPIRTKFLFDRQQAFDLEILRRVAHHRSR
                     QS"
BASE COUNT         1502 a         1066 c         1062 g         1348 t
ORIGIN      
        1 ctcaatcctg agcttgggga gcgtcaagtc agatgggact ttaatatggg ttacgccacg
       61 acaatcatta tcggattgag ttttattttg ttgggcggat tagtcatgta cggtcaaggt
      121 caagaatttt caaacagtgg cgccatcttt gccaatcaac tcataaatat gtacaccgac
      181 agcctaggcc aatggtccaa agcgtttatc ggtgttgccg cgttcacgac catgtttagc
      241 acctccttga gcactttgga tggttcccca cgggtcatgg ccaagacctc gagcttgctt
      301 tttgctccag gatatcaaat aaactatctt gcttggttag tcattttagt catcggcagt
      361 gtcctgattt atttggggct tacggatcaa atgggcacct taattaccgt tgggacagtc
      421 ttgtcattta tctccgcacc tttttatgcc ctaattattt atcgcgtggt tacgggacct
      481 agtttaccta aagaacacca tccggggttg tgggttaaaa tctttagcct tttagccata
      541 gccttactca ttggatttag tctttggtat ttaaccacac tttaaggctt ttaaaggcaa
      601 aatcccccct tgctaaagtc agaatgtttt atctttgctc gagtcattaa ttggacctga
      661 attatgagcg agattgagac cctattaacc aaaccggcac ccaaacctaa atggcttcgg
      721 gttaaattac caacgggtaa aaaatatacc gaattacggg gcttggttga tcaatacaac
      781 ctgcacacca tctgtacatc ggggagttgc ccaaatatgg gagaatgctg gactgaaggt
      841 acggcgacct tcatgatttt ggggaacatc tgtacgcgct cgtgcggatt ttgcggggta
      901 aaaactggac ggccgcaaga tgttgattgg gatgaacctg aaaaagtagc gcgatccatc
      961 aaactcatga acattaagca cgcggtgatc acctctgtgg atcgcgatga tttaaaggat
     1021 atgggttcga tcatgtgggc cgagacaatc aaagccatcc gccggatgaa tcccgagacg
     1081 accttggaga ccttgattcc agattttcaa ggcgaaacaa aaccccttga ccgcattatt
     1141 aaagtggccc cagaagtggt ttcgcacaat atggaaacgg taagaagact gactcgcgaa
     1201 gtaagaatcc aagcgcaata tgatcgtagc cttggtgttt tggcttattt gaaagatcaa
     1261 gggattaatc gaaccaaaag tggaatcatg ttaggcctcg gagagcgtga agaagaagtc
     1321 atacaaacaa tgaccgattt gcgtcaggcc aaagttgatg tcgtgacctt gggacaatat
     1381 ctacaaccct ccaaaaaaca ccttcctgta aaagaattca tcaccccaga tcagttcaaa
     1441 aagtacgaaa caattggttt agcgatggga ttccgtcatg tggaaagtgg tgcgctcgtg
     1501 cggtcttctt acaaggctca aaaacacata ctttaagcct ataatcaaag gctaaaacca
     1561 gaccatagcg catttcgagc ccaggccttt ttgtggattt attctgacca cccatgatgt
     1621 cattggtcta gaataatgca aaagccaatt taattcatct caaattaatt atatttattc
     1681 acgaagtaga ttcatagaat gcgatacacc tcgtttatac tgcggtccat cattttgatg
     1741 ttcttcctgc tcatcacgct catcgtgcac tcctcgcctc agagtaacga gcaagcaatg
     1801 gacccctata gtcaactgca cgaacaagga gtattatttt tagatcagaa taattatcag
     1861 caagccttac tgaccctcaa tcaagcggtt caaggagccg ctcaagccca agatgatgta
     1921 gcgcgggcca caattttact gagcctcgca cgattgcatt atacaattta caatttcgat
     1981 cacgcggccc ttcaagtgca caatgccatt gaattactgc gcaacgaaag cgcccctgat
     2041 ctcattgcac aagcacaaac attgctcgga tttatctata ctgaaaatgg gaaatgggaa
     2101 gaggccgaga tttttctcca cttggcagat cagtattatt ctaataatgg tatttcagac
     2161 gcacgagccc tcgttctttt gggttacggg gcactgtcta taaagcaaaa agtattcggt
     2221 gaggcgatca attatttgga ggcggctaaa atttcattaa acaaccaaca aaaaataaaa
     2281 gatttagccc ggtgcgcatt actcttggcc gaggcctaca ttaaaattga tccggaccaa
     2341 ttgcccaatg cattgaataa ggcacgtctg gccctagcac aagccaaaag cattggccaa
     2401 gaaactgagc tcgaaagtat tgaaatcgaa gccttgagac ttgaatccta tatcgcacta
     2461 agagaaaaca agtttaatga cgcagaggaa tttctcatgc gttttgaaca aaagaatgat
     2521 tcattacatc agtattattt gaataccatt ctaaaaacaa gttctgacaa tggcgattta
     2581 gcgagtttga atgaaataat cgatcagcaa aaaagtgatt tagatcgtca acaacgctcg
     2641 attagtttta gcaaaattac cacggggctc agtattgccc ttatcgtgat tttatccctg
     2701 ttgacgttgt cgctatataa aaataataat cttcgggcca aagccaatat tctgcttcaa
     2761 gacaagaata acgagctcca agtggccaaa gaacgggctg aaaaggcttc gatggtcaag
     2821 gcagaatttt tatcgaccat cactcacgaa ctgcggaccc caatgtatgc cgtgaccgga
     2881 ttgacgcatt tgttactcga agaaaatcca aaacctgaac aaaaagagca tcttcgctcg
     2941 cttcagttct ctggagaata cttgttgaat ttgatcaata atattttaga cctcaacaag
     3001 ctggaggcca ataaagttga aattgaaaaa acaacgttca atcttaaaag gcgcttgaat
     3061 gatgttctta tagcgttaaa taaatccgcg gtcgatcgta aaaacaattt acgtttggag
     3121 tatgacgacg agatcccaga caagctggag ggagattctg taaagctctc tcaaattctg
     3181 atcaacttaa ttggaaattc attaaagttc acccaaaatg gtgatgttat tgttcgtgtt
     3241 aaaaagctcg gcgataaaaa caataagatt acccttcatt ttgaaatcga agataatggg
     3301 gtagggattt cgaaaaagaa gcaaaagagt attttcgagt ctttttctca agcgtcttta
     3361 caaatcaatc gaaaatttgg cggaacggga cttggacttt caattgtcaa gagccttttg
     3421 gagctcatgg gcagtcgcat acagcttgaa agtcaattag gtaagggatc aaagttttgg
     3481 tttgatttag ttttagatat ttcagcccaa ggcgctaccg aagaggataa tgccaagcaa
     3541 ttaaacgaaa gcgaatacag cagcctagaa aatcgtcata ttttagtggt tgaagacaac
     3601 aagatcaacc tgatgattac gcgcaaaatc ctcgaaaagc gcaatatcat ctgtcaggtg
     3661 gccgacaatg gtatggatgc tataaaaatg gtcgaaacca atgactttga tgttgtacta
     3721 atggatattc atatgcccgg aattagcggt atcgaagcga cccaagaaat acgaaaattt
     3781 aagcctgatc ttccgattat cgcattaact gcggtaacta tagaagaaaa tattgatgaa
     3841 ttttttagag caggtttcag tgaaatcata ccgaagcctt tcaagacgnn nnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggaagaat ttttcgaaaa
     4021 aattcaccga accttaactc aagatacctc tgcctagacc tgggttctgc tgaagacaac
     4081 ttagctctgg cgtgagcgat gatgggcaac ccttcttaat atttctagat caaaggcctg
     4141 ctgacgatcg aaaagaaatt ttgttcggat cggccagtaa taaatcgctc gtttttccag
     4201 tcgatcccct aacctttgaa agtctttctc cgtggtgagt atcaaatctt gttgccgcaa
     4261 ttttataatt tctgcctcac taaaattgtg gtggtccgaa taggaaaaat gttcaaaacg
     4321 tgcgcccaaa ttctttaatt tttccaccat gggctcgggg cgtgcaattc ctgttaccaa
     4381 aacaaaaggc aatttggcga agtccttaat ctcgatttcc tggtgaggtc caatacagta
     4441 gccaccgtaa tcaattgatg tcgcataaaa actttgatcc tcgccgagtt ttaaatcaat
     4501 ttgaagggat tgaccgtggg cataggccaa acgctcggga catttggtga ctacgacaat
     4561 atccgcccta cgggccccct taatccattc gcgaagtcgt ccccaaggca atactttatc
     4621 cttgtgataa ggcttatggt attgggttaa caaaatgttg attgccggac gcacatagcg
     4681 atgctgatac gcgtcgtcta ggagaataat ttcacaatgg gcggtcaaag tttttatcgc
     4741 ggccacacga ttagcacaaa ccgctaccct aatgtccggg aatttgcgtt taaattgcag
     4801 gggctcatcc cccacctcaa cggccgtatg ctggggattt acttccaaat aacctttggt
     4861 tttgcgtccg taaccgcgac tgaccacccc taccttatat tcatgcgata ataaggtgat
     4921 taaatattca atcatcggtg attttcctgt gccgcccaca ctgagattac ctacagagat
     4981 aatggggatc tcaaactcat gctccgggag aattccgcga tcaaaagccc aattgcgcag
     5041 ggcaaggaca ctgccataaa gcaaggaaaa aggagctgca ataatattca tt
//
LOCUS       DPUP01000119            3922 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9010,
            whole genome shotgun sequence.
ACCESSION   DPUP01000119 DPUP01000000
VERSION     DPUP01000119.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3922)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3922)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1251)
                     /locus_tag="DHV98_04080"
     CDS             complement(<1..1251)
                     /locus_tag="DHV98_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008107117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HCK05543.1"
                     /translation="MLIESILVVLLVVTLILLWRSFNAKDDSVPKLLEEKHRQMLMDI
                     NDSLNKLSDRFNKTVTDELTATRESLNALQLSQQASLAKIREDVIEKLHTTLAEQGKS
                     QQETLQNSLKNTAIQLMSSVENLTKTVDTRLEEITGKVHERLEEGFKKTNATFVSVME
                     RLQTIDEAQKKIDGLTTNMVSLQELLGDKRSRGAFGEMQLEGLVKNILPPDAYSLQYT
                     FLTGARADCVLFLPEPTGTVAVDSKFPMENYQKMFNIGDSVADKDKAKKQFKLDVRKH
                     IADIAKKYIIPEETSDGAVMFIPAEAVFAEIHAYHPELIHEAMSLKVWLVSPTTLMAV
                     LNTARAVLKDVETRKQVHIIKAELGKLGKEFDRFDGRMKKLADNIRQAHEQAQDVHVT
                     SQKISRRFSQIERVELKDDPNALLE"
     gene            complement(1488..2093)
                     /locus_tag="DHV98_04085"
     CDS             complement(1488..2093)
                     /locus_tag="DHV98_04085"
                     /inference="COORDINATES: protein motif:HMM:PF01205.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HCK05544.1"
                     /translation="MLTFSETNTSDELIVNKSKFIGFTLIGDSREIFIKKVSKIAQQH
                     GGANHLAFAYQIKSKNSLDAYFFDAGEPSGTAGKPLLTILESKKMVNAGIAVVRYYGG
                     VNLGTGGLARAYSKAGMMAFSATKTEEFIQLNLYILTIKYNMLGIISNLISENRGVIV
                     DKKFDVDIHLLTKLTEELALKIENDFSSVKINRANEKKGPI"
     gene            complement(2096..>3021)
                     /locus_tag="DHV98_04090"
     CDS             complement(2096..>3021)
                     /locus_tag="DHV98_04090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008107111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HCK05545.1"
                     /translation="DAFMPNLVQTIEGTPALIHGGPFANIAHGCNSYAATQMGLDLAD
                     YVVTEAGFGADLGAEKFINIKCRQTGLSPDLIVIVATIKALKYHGGLELDELAHENTE
                     ALEKGFENLARHIKNCHEHYGLNLLVAINQFNTDTPSEIKLIQEKVKQLGFEAVLCTH
                     WADGPKGAEKLAHKVMALTEGKPAHKLKLLYPDNASVKEKLEIIARNIYHAEAVVFEE
                     KALLQMASLPESSLTYPVCIAKTPYSFSSDAKARGASSNHSLVVREINLVRGAQFIVA
                     ICGAVMRMPGLPIVPASNTITVTEGIIEGLS"
     assembly_gap    3022..3117
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3118..3866)
                     /locus_tag="DHV98_04095"
     CDS             complement(<3118..3866)
                     /locus_tag="DHV98_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020168583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HCK05546.1"
                     /translation="MLSDLEIAQQATLEDINVIAKKLAIPKEALVQYGPHIAKINPQK
                     LTASKKTHSKLILVTAMSPTPAGEGKTTTTIGLADALSHLNQKAIICVREPSLGPVFG
                     MKGGATGGGYAQVLPMENINLHFTGDFHAITSANNLLSALIDNHIYHGNSLGIDPEQI
                     TFKRCLDMNDRSLRRTHITNERYSYDTGFDITVASEVMAIFCLATSLENLKERIGEIE
                     VAKNINSKAPSILAKDLKAEGAMTALLKDAF"
BASE COUNT          911 a          903 c          920 g         1092 t
ORIGIN      
        1 ctcgaggagt gcgttggggt cgtcctttag ttccacccgc tcgatctgtg agaagcgcct
       61 ggaaattttt tggctggtga cgtgcacgtc ctgtgcttgc tcatgcgcct gacgaatatt
      121 gtctgcgagt ttcttcatcc gcccatcaaa gcgatcaaac tccttgccta gcttaccgag
      181 ttcggccttg atgatgtgca cctgtttacg ggtctcgaca tcctttaaga ccgccctggc
      241 ggtatttaat acagccatga gggtggtggg ggaaacgagc cagaccttta aactcatcgc
      301 ctcatggatg agctcggggt ggtaggcgtg tatctctgcg aagactgcct cggccgggat
      361 gaacatgacc gccccgtcgg aggtctcctc gggaataatg tatttcttgg cgatatcagc
      421 aatgtgcttc ctcacatcca gcttgaactg ttttttggct ttgtccttat ccgcaaccga
      481 atcgccgatg ttaaacatct tctggtagtt ttccatcggg aacttagagt cgacggccac
      541 cgtcccggta ggctccggca agaacaatac gcaatcggca cgggcgcccg ttaaaaaggt
      601 gtattgaagg gagtaggcgt cgggagggag gatgttcttg accaagccct cgagctgcat
      661 ctcaccgaaa gcgccccgcg atcgtttgtc gcctaagagc tcctggaggc tgaccatgtt
      721 agttgtcagt ccgtcaatct tcttctgcgc ctcgtcaata gtctgcaggc gctccatcac
      781 gctgacaaag gtggcgttgg tcttcttaaa gccctcctcc aatcgctcat ggaccttgcc
      841 ggtgatctcc tcgagtcggg tatccacggt cttggttaaa ttctccacgg agctcatcag
      901 ctgtatggca gtatttttca gtgaattctg cagggtttct tgctgagact ttccttgctc
      961 agcgagcgtg gtgtgaagct tctcaatcac gtcctcacga atcttagcca gtgacgcttg
     1021 ttgagagagc tgcagggcat tgagtgattc ccgggtcgcc gtcaactcat cggtgaccgt
     1081 cttattaaag cggtctgaga gtttgttgag ggagtcattg atgtccatta acatctgccg
     1141 atgtttttct tccagcagct ttgggacgga atcatccttc gcgttaaagg atcgccataa
     1201 gagaatcagg gtgacgacta aaagaacaac aaggatggat tcaatcaaca ttaaggggcc
     1261 tgtgacgtgt gagtaggtca gtcaatttca tattttatag ctttgtaatt aatatcattt
     1321 aatattaaca gaatccaatt ggagaatggt atattctccc tgtgcaattc gtctgcggaa
     1381 agcacttaac aactcaaaat aaaggaaacg aaaatgggca gtcgagacaa aagaaaagaa
     1441 tcaaaaggta aaccaaaaaa accaaaagca ccaacaattt tctttggcta aataggtccc
     1501 ttcttttcgt tcgcgcggtt aattttaacg ctcgaaaagt cattttctat ttttaatgcc
     1561 agctcctctg tgagcttggt caacaggtga atgtccacat caaatttctt gtcgacgatc
     1621 acccccctat tctcacttat taagttagat attattccca acatattgta tttaatagtt
     1681 aaaatatata aatttaactg aataaattct tctgtttttg tcgcagaaaa ggccatcatt
     1741 ccagccttgc tgtaggcacg tgcaagtccc cccgtgccta aattaacccc accgtagtag
     1801 cggacaacgg ctattccggc attgaccatt tttttggatt ctaggattgt cagcaagggt
     1861 tttccggcgg tacctgaggg ttccccggca tcgaaaaaat acgcatccag actgttcttt
     1921 gatttaattt ggtaggcaaa tgcgaggtgg tttgcgccgc catgttgctg tgcaattttg
     1981 ctcacctttt taataaaaat ttcccgagag tcgccaatta atgtgaagcc aataaattta
     2041 gatttattaa caattaattc gtctgaggtg ttcgtttcag aaaaggtgag caatactaac
     2101 ttagcccctc aatgattcct tcggtgacgg ttatggtgtt actggctggc acgatcggga
     2161 gtccaggcat acgcatcaca gccccacaaa tggcgacaat aaattgtgcg cccctcacca
     2221 gattaatttc tctgacgaca aggctgtggt tggatgacgc ccctctagct ttcgcatcac
     2281 ttgaaaatga gtagggtgtc ttggcgatgc agaccggata agtcaggctg ctctcgggga
     2341 ggctcgccat ctgaagcagc gccttctcct caaacacaac cgcctcagca tggtaaatat
     2401 ttcttgcaat gatctctaat ttctctttga ccgatgcgtt gtcaggataa agaagtttga
     2461 gcttatgggc gggcttgcct tcggttaacg ccatgacttt gtgggcaagt ttttcggcac
     2521 ccttagggcc gtcagcccaa tgcgtgcaga ggactgcctc gaacccaagc tgcttaactt
     2581 tttcctggat gagcttaatt tcagaggggg tgtcagtatt aaactggttg atcgcgacca
     2641 gcaggtttag gccgtaatgc tcatgacagt ttttgatgtg ccttgcgagg ttctcgaatc
     2701 ctttttcaag ggcctcggtg ttttcatggg ctagctcatc caactcaagt ccgccatggt
     2761 attttaatgc cttgatggtg gccacaataa caattaagtc gggcgacaga cccgtttgcc
     2821 gacatttaat attgataaat ttctcagcgc ccaggtctgc gccgaaaccc gcttcggtga
     2881 ctacgtaatc ggcaagatct aaacccattt gggtcgcggc atatgagttg cacccgtgcg
     2941 cgatgttggc aaacgggccg ccatgaatca atgccggcgt gccttctatc gtctgcacta
     3001 aattcggcat gaatgcgtct tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnatg
     3121 aatgcgtctt ttagaagggc ggtcatagca ccctccgcct ttaagtcctt agccagaatg
     3181 gagggggcct tcgagttgat gttcttagca acttcaatct cccctatgcg ctccttcaaa
     3241 ttttctaaag aggtcgccaa acagaaaatg gccatcactt cactcgccac cgtaatatca
     3301 aagcccgtgt cgtagctata gcgctcattg gtgatatgcg ttcgcctcaa ggatcgatcg
     3361 ttcatgtcta aacagcgctt aaaggtaatc tgctccggat caatgcccag gctgtttcca
     3421 tgataaatgt ggttatcaat caaagctgac agtaaattat tggcggaggt aatcgcgtga
     3481 aagtcgccgg taaagtgtag gttgatattc tccatcggca acacttgggc gtatccgcct
     3541 ccggtcgcac cgcccttcat accaaagacc ggtcctaatg acggttcacg aacacaaatt
     3601 atggccttct ggtttaaatg tgaaagggca tccgctaggc caatagtcgt ggtagttttt
     3661 ccctcacctg caggggttgg gctcatggcg gtcacgagga taagtttgct gtgagtcttt
     3721 ttgctggcgg taagtttctg agggttaatt tttgcaatgt gtgggccgta ttggacgagc
     3781 gcctccttag ggattgctaa ttttttagca ataacattga tatcttctag ggtcgcttgt
     3841 tgggcaattt ctaaatctga cagcatgggg ctctcctgaa ttgtaatttt tatctttaac
     3901 ttaatttaaa tgattttaag gt
//
LOCUS       DPUP01000120           14114 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2087,
            whole genome shotgun sequence.
ACCESSION   DPUP01000120 DPUP01000000
VERSION     DPUP01000120.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14114)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14114)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14114
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            137..826
                     /locus_tag="DHV98_04100"
     CDS             137..826
                     /locus_tag="DHV98_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbB"
                     /protein_id="HCK05547.1"
                     /translation="MLVLLSLQNDVSVDQEAAEQTLSLMELILSGDLGGQIIIGLLFV
                     LLLVALYIYFERLSAIKAAGKTDPNFMSQIRTFILSGKPDQAKALCRQHHTPVARLTE
                     KGISRIGHPLEDINSAIENAGRLEVYALEKNVSVLATISGAAPMIGFLGTVIGMVLAF
                     HELANSSGQAEMGALAEGIYTAMTTTVAGLIVGIVAYMAYNHLVVKTDKVVHQMEATA
                     VDFIDLLNEPA"
     gene            826..1218
                     /locus_tag="DHV98_04105"
     CDS             826..1218
                     /locus_tag="DHV98_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010521719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HCK05548.1"
                     /translation="MNLRGRNKVSATFSMSSMTDIVFLLLVFFLLTSPAITPNALDLL
                     LPEAKGKSTNQHQASVSITKEGAFFINKERIAKGQLESALSQVLNSVSKPTVILRAEQ
                     GVPIEQVVYVMDLANRRNYQVVLAVNPK"
     gene            1220..2089
                     /locus_tag="DHV98_04110"
     CDS             1220..2089
                     /locus_tag="DHV98_04110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCK05549.1"
                     /translation="MSVALDIHQRKGALKTILIGIVLLLILLFFGLRHYDPPLERGII
                     IALGTSEGTTAQNSSKSAQSTESSAQQEASISEPTEVIEEVDRDTADNTEVESTPTEA
                     QIQESTHEITPAEEELLVAETSEVPVVSQQEPKPDAATAEALKRVLSGQSTSLPNTQN
                     NQDTSADPAAQDNELTLGAPEGSPLSESPYNLGIGLDGDGNYLLGGRRALYKEVIIQD
                     CNQAGRVVVSIEVNQKGEVVTAMPGVRGTTNNAPCLLDPARRAALATQFNPDLKAPSR
                     QIGKIIYVFRLSQ"
     gene            2145..4619
                     /locus_tag="DHV98_04115"
     CDS             2145..4619
                     /locus_tag="DHV98_04115"
                     /inference="COORDINATES: protein
                     motif:HMM:PF07494.9,HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK05550.1"
                     /translation="MRYLVTLLILLFFSSCADFNDRRNTHVIDSPELKPNDWMFMQRA
                     FPTGRLDPQAQRQAVMQKRAMNTSGGNWNTVGPINIGGRISDIEMVNDQEYYVAAASG
                     GIFKTTNAGADWTPVFDGQNSLSIGDIAIDPNNSNHIWVGTGEVNAGGGSLAYDGDGV
                     YFSDNGGQSWTNKGLSEVGNIGKVLIDPNNAQNIFVGAMGPLFRNDANRGVYRSQDGG
                     DTWTQSLFVSDSTGVVDMAIHPSNGQIIYAAAWQRVRRPQYRSYGGITSGLYRSLDGG
                     DSWTELTTGLPTSANQKGRISIAIAPSNPEVLYARYADATGNIQGVYRTNDGGDSWTA
                     MNSSALNNVGFHWWFRGIVIDPSDENTIYNVDFQVQKSTDGGNNWFGAFNNVHVDQHA
                     LAFDPSDPNNLVLGNDGGVYFSPDGGSTWTKDEQLPITQLYRCYVDPSNANGIYLGAQ
                     DNSTHRTLTGGPDDYEIIYGGDGFQPLVDPNNSNVIFAQYQYGNIGKSTNNGASFNGA
                     TAGISGADRKNWDTPIVFDPQNAQVMYTATQRVYRTENGAGLWTAISGDLTNGPGGGN
                     LNYGTVVALDVSPFNPDKILAGTDDGNVWMTLDTGTNWELISADLPARWVTKVLHSVT
                     HPGTLFVTLSGYRYGTDEGHVYASYDNGQNWIDLSSGLPDVPVNDIVQDDQGRIFVGT
                     DIGVFGSADGGANWSVIGANLPSVVVNDMHIHQGTQELLIATYGRSAYRLALNEILLN
                     SHTKPTSRHGRLWPNPARGRANLTLIQGLNNPQVALHNAQGQVLRQYDCLGLECVLDL
                     EGFAPGLYFISYSTEQGDIAQKLIIR"
     gene            4653..5885
                     /locus_tag="DHV98_04120"
     CDS             4653..5885
                     /locus_tag="DHV98_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate synthase"
                     /protein_id="HCK05551.1"
                     /translation="MNQAFKTYDDAVQWLFLQLPQYQRQGAAAYKPGLARTERLMAYL
                     NNPERRFKSIHVAGTNGKGSTAHMLASVLQAAGFRVGLYTSPHLKDFRERIRINGVSI
                     AESDVLEFVQDHAAVFKEMGLSFFEMTVGLAFDYFDRSKVDVAIIETGMGGRLDSTNV
                     ILPILSVITNIGLDHIQFLGDTHQAIAREKAGIIKHKTPVVIGQYTDQTLEVFQSISN
                     KLNAQLIKAQDQVYDTYECDLKGAYQQLNQKTVLTALAVLKTQGFYISAQHIALGFSQ
                     VQKSTGLMGRWQTIGQRPLIICDTAHNADGLTVTMRQLDDLNAPQRHLVLGFVADKAL
                     EDIFELLPKAGIYYFCAAHNPRAIEASKLEDLGSRMGLKSQTFNSVNEALSAAKSKAS
                     DQDVIYVGGSTFVVAEVL"
     gene            5965..6039
                     /locus_tag="DHV98_04125"
     tRNA            5965..6039
                     /locus_tag="DHV98_04125"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:6000..6002,aa:Val,seq:tac)
     gene            6137..6211
                     /locus_tag="DHV98_04130"
     tRNA            6137..6211
                     /locus_tag="DHV98_04130"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:6172..6174,aa:Val,seq:gac)
     gene            complement(6347..7699)
                     /locus_tag="DHV98_04135"
     CDS             complement(6347..7699)
                     /locus_tag="DHV98_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008635028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HCK05552.1"
                     /translation="MTKRAELPHIYDCFLKSSAVCTDTRKLSKGCFFVALKGETFDGN
                     KFVVQAFEAGAQFALMDDQTLSAAKFLEPYRDRILLVEDALASLQDLATYHREKLALP
                     ILALTGSNGKTTTKELLQTTLSQKLNCLATIGNLNNHIGVPLTLLRLTKNTELGIVEM
                     GANHQGEIALLCKIARPNYGYITNFGKAHLEGFGGVEGVIKGKSELIDYLTATSGRMF
                     VQATDTRQMERTEKLQRTVLNADMQWHLLTEDHRDPINSEDRLSQPTLLLSGPKGTIK
                     TQLIGAYNAPNVIAAAEIAEYFNLPWDNIKAALEQYTPHMNRSQGLTRGPYNLIMDAY
                     NANPSSMQAALDYFGQLTSHDHKVVILGDMFELGQAAAAEHQIIVNLAEQLGFDQIYL
                     AGDNFSKTKHNPKQTLCFDHYNALEQHLLDQPPKPGTILIKGSRGMALERLLSVVFRE
                     "
     assembly_gap    7757..7862
                     /estimated_length=106
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(7897..9632)
                     /gene="gldJ"
                     /locus_tag="DHV98_04140"
                     /pseudo
     CDS             complement(7897..9632)
                     /gene="gldJ"
                     /locus_tag="DHV98_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782454.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldJ"
     assembly_gap    8827..8883
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            9836..13819
                     /locus_tag="DHV98_04145"
                     /pseudo
     CDS             9836..13819
                     /locus_tag="DHV98_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779123.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C25"
     assembly_gap    12530..12618
                     /estimated_length=89
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    13259..13320
                     /estimated_length=62
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            13857..>14114
                     /locus_tag="DHV98_04150"
     CDS             13857..>14114
                     /locus_tag="DHV98_04150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008254595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05553.1"
                     /translation="MKNGLLLVFSMMMLVQNAFAQDEIPPQPITTGVPFLLIAADARA
                     GGMGDIGVATSADAFSQQWNPSKYAFSTSEQGFGVTYTPYLS"
BASE COUNT         3675 a         2900 c         3250 g         3975 t
ORIGIN      
        1 agcctggtta gcgtttgttg ggtttattgc tggcgctggt ttatttttat ttatcgagcg
       61 cgttcttttt catcacgtct aacaatttca ccgagaccaa agcgttctct tagaaagatt
      121 ttttatgaag ttactgatgc tcgtgttgct tagtctacaa aatgatgtct ctgtggacca
      181 ggaggcagcg gaacaaacct tatccctcat ggagcttatc ctgagcgggg atcttggcgg
      241 tcaaattatt attggattat tgtttgtcct tttactggtg gctctttata tctattttga
      301 acgcttgtcg gccattaaag ctgcgggtaa gacagaccca aattttatga gtcagatcag
      361 gacgtttatc ctttcgggaa aaccggatca agcaaaagca ctgtgtcgtc aacatcatac
      421 gcctgttgcc cgattgaccg aaaagggaat ctccagaatt gggcaccctc ttgaggacat
      481 aaattcggcc atagaaaatg ccggacgtct tgaagtttat gccttagaga aaaacgtgag
      541 tgttttggca acgatctcgg gggcggcccc aatgattggt tttttaggga ctgtaatcgg
      601 catggttttg gcctttcatg aattagccaa cagcagtggt caagcggaaa tgggtgcttt
      661 ggcagagggg atctatacag ccatgaccac cactgtagcc ggacttattg tgggtattgt
      721 ggcctatatg gcgtacaatc atttggtcgt taaaaccgat aaagtcgttc accaaatgga
      781 agcaactgcc gttgatttta tcgacctact aaacgaacca gcttaatgaa tttgcgcgga
      841 cgcaataaag tcagtgcgac ttttagcatg agcagtatga ccgatattgt ctttctgctt
      901 ttggtctttt ttctgttgac ttctccggcc attacaccca acgcccttga tttgcttttg
      961 cctgaggcca aaggtaaatc aacgaatcag catcaggcat cagtaagcat caccaaagag
     1021 ggggcatttt ttatcaataa agaacgcatc gccaaaggtc aacttgaatc tgccttgagt
     1081 caagtgctca attcagtatc aaaacctaca gtgattttga gagcggagca gggggtcccg
     1141 attgaacagg tcgtttatgt gatggatttg gccaatcgaa gaaattatca agttgttttg
     1201 gctgtaaatc ctaaataaga tgtcggtggc tttggatatt catcaacgca aaggcgcctt
     1261 aaaaacgata ctcatcggta ttgtcttgct gctgatctta ctcttttttg gcttacgtca
     1321 ttatgacccg ccactcgagc gtgggattat cattgcgcta ggcacatccg agggaacgac
     1381 cgctcaaaat tcaagcaagt ctgcccagag tacggaatcg tcggcccaac aagaggcgtc
     1441 cataagtgag cctaccgagg tgattgagga agtagaccgt gacacagcgg ataacaccga
     1501 agttgaatca accccaacag aggcccaaat acaagaatct acacatgaga taacccctgc
     1561 cgaagaggaa cttttggtcg ctgagacttc tgaggttccc gtagtttcac agcaggaacc
     1621 caaaccggat gccgctactg ctgaggccct aaagcgtgta ttgagcgggc aaagcacctc
     1681 attgccaaat acccaaaata atcaagatac cagtgccgat ccagcagccc aggacaatga
     1741 actgaccctt ggcgctcctg agggcagtcc tctatctgag agtccctata atcttggaat
     1801 tgggctcgat ggagatggta attatttact tggtggtcgc cgcgccttgt acaaagaggt
     1861 cattattcaa gattgtaatc aagcaggacg ggttgtggtg agtatcgagg tcaatcaaaa
     1921 gggtgaggta gtcaccgcaa tgccaggagt acgagggacg accaacaatg ctccttgtct
     1981 cttagaccca gcgcggcgcg ctgctttagc gacgcaattt aatcctgacc tcaaggcgcc
     2041 atcgcgacaa attggaaaaa ttatttatgt tttcaggctg tcccaataaa atgcgccctc
     2101 atcaatgggg taaatgaatt atctttagtg cataaactca ttttatgcgc tatttagtta
     2161 cccttttgat tttacttttc ttttctagtt gtgccgattt taacgaccgt cgaaacaccc
     2221 atgttattga ttctcctgaa ttaaagccca atgactggat gtttatgcag cgtgcttttc
     2281 ccacaggacg acttgatccc caagcacaga gacaagcggt gatgcaaaag cgcgcaatga
     2341 atacttcagg gggtaattgg aatactgtgg gccctataaa tataggtggg cgtattagcg
     2401 atattgaaat ggttaacgat caagaatatt acgtggcagc agcctccggg gggattttta
     2461 aaacaaccaa cgcaggagca gactggacac ccgtttttga tggtcaaaac tccttgtcca
     2521 taggcgatat tgccattgac ccaaataatt caaaccacat ttgggtggga accggagagg
     2581 ttaacgctgg aggagggtct ttggcttatg acggggacgg cgtctatttc tcagataatg
     2641 gtggtcaaag ctggacgaat aaaggactat cagaggtggg caatattggt aaagtcctca
     2701 tcgatccaaa taatgcgcaa aacatttttg tcggggccat gggccctttg tttcgcaatg
     2761 atgccaatcg aggggtgtac cgcagtcaag atggaggcga tacttggact caatctcttt
     2821 ttgtgagtga ttccacggga gtcgttgata tggcaattca tcccagtaat ggacaaatta
     2881 tttatgccgc agcctggcaa cgggtacgtc gtccacagta tcgttcctat ggagggataa
     2941 cctctgggct ttatcgctca cttgatggtg gagacagttg gactgaattg actactggat
     3001 tgcccacatc ggccaatcaa aaaggacgta tcagtattgc gattgcgccg tcaaatccag
     3061 aggtattgta tgcccgttat gctgatgcca caggaaatat acaaggagtt tatcgcacta
     3121 atgatggcgg ggattcatgg actgcaatga attcaagtgc gttgaataat gtcggttttc
     3181 actggtggtt tcgaggtatt gtaattgatc cctctgatga gaataccatt tacaatgtgg
     3241 attttcaagt gcaaaagtca accgacgggg gcaataactg gtttggtgca tttaataatg
     3301 tccatgtgga tcaacatgct ctggcttttg atccaagcga tcccaataac cttgttcttg
     3361 gcaatgatgg cggtgtttat tttagtccag atggtgggag cacttggact aaagacgagc
     3421 aattgccgat cacacaactt tatcgttgct atgtcgatcc ctcaaatgcc aatggaattt
     3481 acctgggggc tcaggataac agtacccatc gaaccctcac agggggacca gatgattacg
     3541 aaattattta cggcggagat ggatttcaac cccttgttga tccaaataat tctaatgtca
     3601 tttttgccca ataccaatat ggcaacattg gaaaatcgac caataatgga gcgagtttta
     3661 atggtgcaac tgcaggtata tcaggagctg accgcaagaa ttgggatacc cccattgttt
     3721 ttgacccaca aaatgctcaa gtcatgtaca cggccaccca gcgcgtatat cgcactgaaa
     3781 atggtgcggg cctatggaca gccataagtg gtgatttaac caatggccca ggagggggga
     3841 acctaaatta cggcacggtg gtcgcattag atgtctctcc ttttaatcct gataaaatcc
     3901 ttgcgggaac tgacgatgga aatgtatgga tgacattaga cacaggaact aattgggaac
     3961 tgatttctgc cgacttgccg gcacgctggg taaccaaggt gttacattct gtgacccatc
     4021 cagggacttt atttgtgacg ctttcgggtt atcgctatgg cactgatgaa ggtcatgtct
     4081 acgcgagcta tgacaatggt caaaactgga ttgacctctc gagcggcctg cccgatgtgc
     4141 cagttaatga tattgttcag gatgatcagg ggcgtatatt cgtgggaacg gatatcggtg
     4201 tttttggttc tgcagatggc ggcgcaaatt ggagcgtcat tggtgcaaat cttccgtctg
     4261 ttgtcgtcaa tgatatgcat attcatcaag gcacccaaga attgcttatt gcgacttatg
     4321 gccgctcagc gtaccgcctc gctttgaatg aaatcctatt aaattcgcac actaagccca
     4381 cgagtcgtca cggacgactt tggcccaacc cagcaagggg tcgggcaaat ttgaccctaa
     4441 ttcagggttt aaataaccca caagtggcct tgcacaacgc ccaaggacaa gtgttgcgtc
     4501 aatacgactg tcttggtctg gaatgtgtgc ttgaccttga aggttttgct cctggtttgt
     4561 attttattag ttattctact gagcaagggg atatagctca aaagttgatt attcgctagg
     4621 aactaaatat ttaaatgcgt ttcatgaccg ccatgaatca agccttcaaa acttatgatg
     4681 atgccgtgca atggcttttt ttgcagttac cccaatacca gagacagggt gctgccgcct
     4741 ataaaccggg cttagcgcgg accgagcgtt taatggccta tttgaacaat cctgagcgcc
     4801 ggttcaaatc aattcatgtt gccgggacta acggtaaagg atcgaccgca catatgctcg
     4861 cctcggtcct tcaagctgcg ggttttcgcg tggggctcta tacgtctccg cacctgaagg
     4921 attttcgtga gcgaatccga attaatgggg tgtctattgc ggaatcagac gttctggagt
     4981 ttgtgcaaga tcatgcagca gtattcaagg aaatgggttt atcgtttttt gaaatgactg
     5041 taggcttggc atttgattat tttgatcgct ccaaagtgga tgtcgccatt atcgaaacgg
     5101 ggatgggggg gcgtttggac agcaccaatg tgatccttcc tattttgagt gtgatcacca
     5161 atattggatt agatcacatc caatttctcg gggatactca tcaagcaatt gctcgagaaa
     5221 aagcgggaat aataaaacat aaaaccccag tggtcatcgg gcaatatacc gatcagactc
     5281 ttgaagtttt tcaatcgatt tccaataagt taaatgccca gttaattaag gcgcaggatc
     5341 aagtctacga tacttatgaa tgtgatctta aaggcgctta ccagcagctg aatcaaaaaa
     5401 cagtcctcac ggcattggcg gtattaaaaa cacagggctt ttatatcagt gcgcaacata
     5461 ttgctctggg attctctcaa gttcaaaaaa gcacggggct catggggcga tggcagacca
     5521 taggacagag gccattaatt atttgtgata cggcccataa tgccgatggg ctgaccgtta
     5581 ccatgcgcca attggatgac ttaaatgctc cgcagaggca tcttgtttta ggatttgtcg
     5641 ccgataaggc tttagaggat atttttgaac tccttccaaa agcggggatt tattactttt
     5701 gtgctgcgca taatccgcgg gcaatagaag cgagtaagct tgaagatttg ggctcgagaa
     5761 tggggcttaa aagccagacg tttaattctg ttaatgaggc actcagtgct gcgaaatcaa
     5821 aggcttcaga tcaggatgtt atttacgtgg ggggcagcac ctttgtggtc gctgaggttt
     5881 tgtagttttt tatgattttt tgttgggcca ttataaaaac taatttatat ttgcagccgc
     5941 tttggttgtc aagacaatca gttcgggcgc ttagctcagt tggttcagag cacctcgttt
     6001 acaccgaggg ggtcgggggt tcgaatccct cagcgcccac agcaaaaaat cctgatgtat
     6061 ccatcaggat tttttgttca agctgactca gatgtttttt aaaacctcga ttttaactac
     6121 atttgaaacc gcttatgggt cattaactca gttggttcag agtgttacct tgacagggta
     6181 gaagtcactg gttcgaatcc agtatgaccc acatttcaaa aaaaatccca gggcgaggct
     6241 ctgggatttt ttttgcttta ttgtgatggt caatattcga tgacggcaaa gtggatcgcg
     6301 cacaatcttg gatcattgtt ttttggcctc attatacgca gcaggtctat tccctaaata
     6361 ccacacttaa cagtcgttct agggccatgc ctctagatcc tttaattagg attgtgccag
     6421 gttttggagg ttgatcaagc aaatgttgtt ccagtgcatt gtaatggtcg aagcacaagg
     6481 tctgctttgg attgtgtttt gttttactaa agttgtcccc ggcgaggtaa atctgatcaa
     6541 aacccaattg ttcagctagg ttaacgatta tttgatgttc ggcggcggcg gcttgtccaa
     6601 gttcgaacat atcccctaaa ataacgactt tgtggtcatg ggatgttaat tgaccaaaat
     6661 aatccaaggc agcctgcatg ctggaaggat tggcattata ggcatccatg attaaattat
     6721 aaggccctcg cgtaagccct tgagatcggt tcatgtgcgg tgtgtattgt tctaaagccg
     6781 ccttaatatt atcccaagga agattgaaat attcggctat ttctgctgcg gcgatgacat
     6841 ttggggcatt ataagcgcca ataagttgcg ttttaatggt tccttttggg cctgacagga
     6901 gcaaagtagg ttggcttagt ctatcttccg agtttatggg atccctatga tcttcagtga
     6961 gtagatgcca ttgcatatct gcattgagta cggtacgctg cagcttttct gtgcgctcca
     7021 tttgtcgggt atctgtggct tgtacaaaca ttcgacctga tgttgcggta aggtaatcga
     7081 tgagctctga tttccctttg atcactcctt ccacaccgcc aaatccttct aggtgggctt
     7141 tgccaaaatt ggtgatataa ccatagttag gcctggcaat tttacataat aatgcaattt
     7201 ccccttgatg attggcgccc atttccacga tccccagttc cgtattttta gtcaagcgca
     7261 gtagcgttaa gggaacacca atatgattgt ttaaattacc tatagtcgct aaacaattta
     7321 atttctggga tagggtagtc tgcaataatt ctttggtggt ggttttccca ttacttccgg
     7381 tcaaagccag tatcggtaag gctagttttt ctctgtgata agtggctaag tcttgcaatg
     7441 aggctagcgc atcttctacc aataatattc ggtccctata aggttctaag aatttggcag
     7501 cacttagcgt ttggtcatcc attagggcaa attgagcgcc cgcttcaaag gcctggacca
     7561 caaatttatt gccatcgaac gtctcccctt tgagggcaac aaaaaagcat cctttggata
     7621 gtttacgggt atcggtgcac accgcggagc tctttaaaaa acagtcataa atatgaggta
     7681 attcagccct ttttgtcatg taactaaaga tataaaaaaa cccttcaaca atggttaaag
     7741 ggttttaatg agatatnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7861 nnttaaaggg ttttaatgag ataacagaac aacgaattag ttattacgtg gtcgtttgcc
     7921 ttttttagat ttgctcccta atcgagacat agcgcaacgg aaaccgatgt aatcggtggc
     7981 catatcttct gggaagtaac ggcgctgtgc aggatccaac cagtagtcac gatctcgcca
     8041 tgacccccct ttgaaaacgc gcacttcgtt gttcaccagt gaggttcttt tagaggattt
     8101 gtcgtattcg cgaacaagat tgccttcatc gtccgcactc actttgtgct gcggtgaatt
     8161 atacattctc tttccgtcgg caactttatt gtcgtcttca ccaccaaaag actggtagtt
     8221 tcgggtcgac tttttatcac catctctaaa atcgcggtta tcgctttctg agaagtttgt
     8281 gcgtaagtaa gtttcgtttt cgtcaacagg tactttgtaa atttcgcctg gtagatcgcg
     8341 cgcgacaatt ttaccgttgc tgagtgtatc gtataaaatt gagtctacac gcaccaccat
     8401 aacttttccg tcggagtcaa ttgcattttt ggtataaata ttaccgcgat agtagttgaa
     8461 gtcattaaat tcatcatcaa ctatagggcg atatacatca gcaacccatt cagcgacgtt
     8521 acccgccata tcgtataaac cgaaatcatt tggttcatag gaaccaacct ctgccgttat
     8581 gtccgcgcca tcgtcactcc agccagcgat tccgccgtag tccccatctc cttgcttaaa
     8641 gtttgccaat tggtccccgc gactgcgtcg atctgaagaa cgcgtgtatt ggccttccca
     8701 aggatatttc tttttaccgc gataaatgtt gtaatcgcga ataccaacaa gtcctaaagc
     8761 agcgtattcc cattctgctt cggtaggcag tctgtaatcg ggcattaaga gtccgtcttt
     8821 gttttgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8881 nnnacgtaaa ggttcgtgct gtcttggctt cttctggcta ggttttcaga atatttcccg
     8941 cctcttgtaa tcgaatcatt gccgccgtaa actttggtcg gcgcggcgag ataggtttcg
     9001 gtgctaaatc ctgatcccgg ttcattatta aaacgcgctc cccgtgtcgt gactccattt
     9061 tgctcaagaa ttaactcatt gacgcgatcg gtacgccagt tcgcaaactc aacagcttga
     9121 atccagctta ccccgaccac tgggtagttc gcataggctg gatgacgcaa ataattattg
     9181 gtcatcactt cattataccc taaacggttc cgccatacca acgtatctgg aagagctccg
     9241 gcgtaaatgt ttttaaagtt ttcgttcgtt ggaggaaaca catttttcaa ccaatcaaga
     9301 tattccaagt acatgaggtt ggtcacctca gtttcatcca tgtaaaaaga ctgaacgtgt
     9361 tgttgtactg ggctgttgtt ccagtcgtgc attggatcat cttgaacacg acccatggta
     9421 aaggtgccgc cttctacaaa aacaagccca gggcctgttt cttgttctct tgtttttgga
     9481 tcatactgaa atccaccttc ttttgaattt aaggcccaac cagtggctcg agaactgttc
     9541 gaataatcac gtgatttgct gcagccgatt aacgaagttg cagtcaaaac caatacacat
     9601 agctttattc caaagttttt gttgacgttc atagtatctt aaaaaaagta aaaatattgg
     9661 gatcgcaata tactaattaa cgcgtaaagc acaatattat ttttcgattt acaaaatcgt
     9721 gctcaggcga agagatccaa gggataacgc gcggtctttg gatttatttt acccaggggg
     9781 tatttttgaa aaaacaagtg gaaacttgtt atactaagct tatatttgaa gcgttatgcc
     9841 aatgatgaag ggaaaagcct ttttgatgtt gtttttgttg atgggaaccg cagtttttgc
     9901 gcaatccaaa acgatcaatt tgccttggtc tgcaacgaca aaaaacacca aattatctca
     9961 gcgcagtccc atgcaaacca agatcggtca gtccctaaat ttaagatggg atgaacaagg
    10021 gccaatgtat tacgagcgtt ggaaggatca gttacccgct gataccgctt cagttcgtgt
    10081 cagtcgtgta gtttggggcg agctgagttc ggaagacaaa aggaaacttc aggggcgtgg
    10141 agtacctcag accttaaaag ttaaggtagt ttcttccaag gcgcgcgatc agtggtatac
    10201 cacagtgatt tttaatcctt ttgttcgaca caatggtcgg cttaaaaaag ttcaatcttt
    10261 tgaactggat tatcgttttt cgtctcaaaa aatgggccac cgtgtttcgg cgataaccaa
    10321 ttctgttttg tcccaaggaa gttggtataa atttgaaata gatcaaaccg gtgtttatcg
    10381 tttagatcga tccttcttga gcagtcttgg gatgaatccg gctgcgatca acccggattt
    10441 actcaaagta tacggccatg gcggtaaacc attaccctta tccaatagcg acccccagaa
    10501 tttcgatttg cctgaggtgc ctctaaaagt cgtgggcggt gaagatgggc gttttgattc
    10561 tggcgattat gttttgtttt acggtcaagg gattatgggt tatgatgccg aaaatgacag
    10621 ccattttaat ccctatgccg aaacggctta ttatttcatt actgctgatg gcgctcccgg
    10681 attgcgtata gaacctatgg ttgagcccgc agcaaatgca gatgtaatct ttgagcaata
    10741 tcaagaacta aaatatcatg aacgcgatga gtactcaccg gccaaagtgg ggcgccgatg
    10801 gtttggagac cgatttgata tccaaaatca acaggaatat aattttaatt ttcctggacg
    10861 aatagcctct gagcccgtta aagttaaagt tcgcgctgcg gccgcttcag aagtacccac
    10921 cagcttgcaa gtaaacgtca atggcaccac tgtagaccct ttgaccttta acgcgatcaa
    10981 cgatcctact ttactcagtg tagattcgtt cgttcaggac ttccaacttt caggagaaag
    11041 cattaacgtt tcgctcaatt ataataattc gggcaatcca tcgagtattg gttatctcga
    11101 ttatgtgcag gttaccgcca ccatgccctt gcgcgcaaat gggtcgagtt ttgtcttttt
    11161 taaccaggaa gcctcaagca gcagtggggt aggccagttt agtataagtc aagcacaaaa
    11221 cattcaggaa gtatgggcca ttgagacgcc ctataatgtg cgttataagg tgaatgatca
    11281 gcaaggcgat attttttcat tcaaaaccat actgggtacc aaggccaatt acgtggcttt
    11341 agtgaccgga gactttcttg agccaagacg ttcggataat gctgctgtag ccaatcaaaa
    11401 tattaaaggg actattttta acggcccagg cggttttcaa gatatcgatt acattattgt
    11461 gaccccgaga agtttagtcg ctgctgctga gcaattggca agccatcaca gaatgcgctc
    11521 aaatctcagg gttcgcgtgc tcactacaga agatatttac accgaattta gttcgggaaa
    11581 acaagatatt ggcgcgattc gaaacctcgt gcgttatgtc tatgagaacg cgagttcttc
    11641 gcaggagaga attaagtacc tgtgtttgtt tggggacacc tcggtcgatt ttaaggaccg
    11701 cttatccggg aataataata tggtgcccac ctaccatacc ctttctagtg tcgatacctt
    11761 taattcattc atgtcggatg atttttttgg gatgatggac cccgacgaag ggactatgtc
    11821 ttcggcgcat tctttggatg ttgccgtcgg gcgtatcttg gttgatgacc cgggtcaagc
    11881 tcagcgcata gtctccaaaa taaaatcata caatgacgaa gcgtcttatg ggtcttggcg
    11941 aaataatttt gtgattattt ccgatgacgt tgatatcgga tgggagtatc gtgctttgga
    12001 agtgaccctt gattctatcg cagatcgcgt gagttttgag aaacccttta tcaatgtaaa
    12061 aaagattcat acggatgcct accaacagga aacttcggca ggaggaaatc gttacccaga
    12121 ggctcgtgac gccatagaaa atgccgttga agtagggtcg ctaattgtta attactttgg
    12181 tcatggtgga gaagatggcc tggcaaaaga gtttatttat accaaagaaa ctgcccaaga
    12241 attgcgcaat gaggagcgat tgccttgttt cgttactgtg acttgcgagt tttcgaagtt
    12301 tgataatccg ctacgggtta ctgcgggaga actcactttt tggaatgagc aagggggtgc
    12361 agggtcatta atcaccacca cgcgatcggt aagtgtcacc ttgggggtag atttcaatac
    12421 tttattgtct gaatatcttt ttggttttgg acaggatgtg cctccagccc cggcagaagc
    12481 gcttagactg actaagaacc ttattgggtc gaataacaag agggttattn nnnnnnnnnn
    12541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12601 nnnnnnnnnn nnnnnnnncc ccaaaaagca aatcagatta acggcgataa acgacgcgcc
    12661 tttgggatta gcaaacgata cattaaaagc actaagtcgc attaaactca gcgggcttgt
    12721 tttagatcca gagggcaatg ccatgccgaa ctacagtgga attcttcaag tgaaggtttt
    12781 tgataaagaa ttacagcgtt caactttagg aaatgatggc attcgcgata atggtacaga
    12841 ttacgatggc gatggaaata caacgaattt gttgttgatg gattttacca cattagggga
    12901 ggtgcttttc aatggacagg ctacagtaaa tcaagggtcc tttgatgtag aatttatcgt
    12961 tccgcgagat attcaggtgc ctgttgggca aggtaaagtg agtttttatt caaagcgcgc
    13021 gggcgtcttt gaagatcagg cggggtataa cttaaatgtc ttggtcgggg ggctgaacga
    13081 aaatgcgcct caagataatg tgggccctga aatagagctc ttcatgaatg atgaaaactt
    13141 tatttccggc gggaccacaa atgacaatcc tattcttttg gtcaatttaa gtgacgatag
    13201 cggcctgaac acaaccggag gaatcggtca tgacttaatc gcgattcttg atggcgatnn
    13261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13321 cgattcggcc aatccttttg ttttgaacga atattatcaa gcgaacgtcg atgacttttc
    13381 aaagggaaaa gttcaattca agttacgtga tttagaagat gggccgcaca gccttcaggt
    13441 gaaggcttgg gatacctata ataatttctc tttagcaacg attgatttta tcgtcagtgg
    13501 cggaaatgcc atcaaaattt caagagtcct gaactatccg aacccatttg tcaattacac
    13561 cgaattttgg ttcaatcaca atcgaccctt tgagccttta gacgtcaccg tacaagtgtt
    13621 ctctgtttct ggaaagttag tctggaatca tcatcaaacc gtaatgacgc aggggtatct
    13681 gtcccgcgac atcatttggg acggaagaga tgattttgga gacaaaatcg gaaagggcgt
    13741 ttatgtctat aaactgactg ttcgttcctc aatatccggc gaaacggccg agaaatatga
    13801 gaaactggtc attttataaa taattaaaaa agtatatttg tcaaaattta ttcaatatga
    13861 agaacggatt gttgttagtt ttttcgatga tgatgttagt gcaaaatgcc tttgcacaag
    13921 acgagattcc gccacaaccc ataaccactg gggtgccttt tttacttatt gctgctgatg
    13981 ctcgtgccgg cggtatgggc gatattggtg tagcgacttc ggccgatgcc ttttcgcaac
    14041 aatggaatcc ttctaaatat gccttttcta caagcgagca agggtttggt gtgacttata
    14101 ctccttacct aagt
//
LOCUS       DPUP01000121           17143 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3055,
            whole genome shotgun sequence.
ACCESSION   DPUP01000121 DPUP01000000
VERSION     DPUP01000121.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 17143)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 17143)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17143
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..184)
                     /locus_tag="DHV98_04155"
     CDS             complement(<1..184)
                     /locus_tag="DHV98_04155"
                     /inference="COORDINATES: protein motif:HMM:PF14134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05554.1"
                     /translation="MFDPRDLKDIQELGIDQAQVMAQIQVFDQGVPALDILRPATIGD
                     GIMDCSMDQWRHWARIF"
     gene            complement(177..782)
                     /locus_tag="DHV98_04160"
     CDS             complement(177..782)
                     /locus_tag="DHV98_04160"
                     /inference="COORDINATES: protein motif:HMM:PF13521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05555.1"
                     /translation="MYRFITPSDQIISPQIVLYGPECSGKSTLSKALAAHYSGVLIPE
                     YLRTYAQDVWDTQNRVIAQQDIMPLIKGQFRAQQEGLALARAKSSAAHLGLCPVFLDT
                     NIYQLAVYFTYYFGMNWGEIPSDMHQPMGQTVYLLTQPDFPWQADDLRDQPLQREALF
                     SIFKADLIQRKAHFIELNGAHEQRMDQACKFISNTWPNLHV"
     gene            complement(783..1412)
                     /locus_tag="DHV98_04165"
     CDS             complement(783..1412)
                     /locus_tag="DHV98_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013073824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide mononucleotide transporter"
                     /protein_id="HCK05556.1"
                     /translation="MDTLIEFLTGPYRTAGIGQIVIESIAFICGILSVWYAKKAHVLV
                     YPTGLVGTALTVYLLYQAQYFGDMMMNVYYSLMSLYGWYQWTRYNDDTPKYPMSQTNL
                     KERWVGFAFFLLTVGVTFGVYQAFDYSIQWYSYVDMVTSGIFFTAMWYMAHKKIEHWI
                     LWIIADVITVPLYAYRGLGMLSLQYLIFTLLAIQGLQAWRKTLKSYSSL"
     gene            complement(1417..2127)
                     /locus_tag="DHV98_04170"
     CDS             complement(1417..2127)
                     /locus_tag="DHV98_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HCK05557.1"
                     /translation="MSPLDRWKTDIQKGKKQLAVLIDPDKCGQDLLPKLLSHLPEATT
                     HIFVGGSSVAPGVTHNLIEAIKRLVDFPVWIFPGDAEQISPAADALLFLSLVSGDNPE
                     YLICQQERAAAQLRAMDLFTIATGYLLIDGGTQSAVARVTKTLPMALSDPDKIVNRAM
                     AAFYMGAKSIYLEAGSGAKIPIPTTLINRIKKQTAMPLIVGGGLRETQQIESAWAAGA
                     DMVVIGTALEEALSLTNS"
     gene            complement(2141..2818)
                     /locus_tag="DHV98_04175"
     CDS             complement(2141..2818)
                     /locus_tag="DHV98_04175"
                     /inference="COORDINATES: protein motif:HMM:PF01648.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphopantetheinyl transferase"
                     /protein_id="HCK05558.1"
                     /translation="MPLLRTINPWPGATVYLWDISETLDQLSAITVMRAESKARFNSM
                     KSPVHRKAFLSVRALLQCANLTDEDLYYDPLGKPYLHTGQYISISHSHQRSAIIVSPY
                     PVGIDIELRRPKILRIAHKFCPGISPELSEITHETVDQFTYVWTAKESIYKMAATPGL
                     GFLRDIELSQWRTEGEVAIGLPSEMTPYVQAKGKITKGQERHFLYQGFITDQYICGMT
                     KDLSPHD"
     gene            2879..4195
                     /locus_tag="DHV98_04180"
     CDS             2879..4195
                     /locus_tag="DHV98_04180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017497980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HCK05559.1"
                     /translation="MPTNTVPYVPFKVKDMSLASWGRKEIQLAEAEMPGLMALRAEYG
                     DSKPLAGARIAGCLHMTIQTAVLIETLQALGAEVTWSSCNIFSTQDQAAAAIAEAGTA
                     VYAWKGMNEEEFDWCIEQTLFFGEDRQPLNMILDDGGDLTNMVLDRYPELVAGIKGLS
                     EETTTGVHRLYERMENGTLPMPAINVNDSVTKSKFDNKYGCKESAVDAVRRATDIMLA
                     GKRVVVCGYGDVGKGTAASFRGAGAIVTVTEIDPICALQAAMDGYAVKKLETVIDTAD
                     IVITATGNKDIVQGAHFAQMKDKTIVCNIGHFDNEIDVAWLKANADGPKVEIKPQVDK
                     YTLNGKDIILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWNHTDKYENKVYML
                     PKHLDEKVAALHLEKIGVELTQLRSDQAKYIGVTPEGPFKPEYYRY"
     gene            complement(4274..4537)
                     /locus_tag="DHV98_04185"
     CDS             complement(4274..4537)
                     /locus_tag="DHV98_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002679833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HCK05560.1"
                     /translation="MAHKKGVGSSKNGRESESKRLGVKIFGGQAAIAGNIIVRQRGTQ
                     HHPGENVYLGKDHTLHARVDGTVKFEKKKGGKSFVSIVPQGEA"
     gene            complement(4557..5084)
                     /gene="rplU"
                     /locus_tag="DHV98_04190"
     CDS             complement(4557..5084)
                     /gene="rplU"
                     /locus_tag="DHV98_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HCK05561.1"
                     /translation="MYAIVEIAGQQFKVAKDQKVFVHRLPEEEGAKVSFDNVLLIGEG
                     DKVTIGAPAIDGAQVGAKVLKHLQGDKVIVFKKKRRKGYRKKNGHRQALTEILIEGIV
                     ASGAQKAAPKAKAAAPKVEAAPKAQAPKAAKADDAVDYDSMTVAQLKDLAKDKGIAGI
                     SAMKKADLIEAIKNV"
     gene            complement(5246..6127)
                     /locus_tag="DHV98_04195"
     CDS             complement(5246..6127)
                     /locus_tag="DHV98_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCK05562.1"
                     /translation="MDKKWLYLIVLSVIWGTSFILIKKGLVGLTQIQLGSLRTVLTAI
                     ILFSVGLPSLKQIKKLQWKWIALSALFGTFFPAFLFAFAQKHIDSAVASILNSLTPLA
                     TAVLGYLVFSIYTTRRQMIGVFIGLLGSIMLIMAGAHINPDQNHWYGILVLVASVGYA
                     LNVNILKKYLNELSPLAIATGNFVVIVIPALLILIGTGYFDEIWTVPEVQVSTGYIAI
                     LALFGTALAKILFNKMIQISSPVFASSVTYTMPVVAVLWGIFDGERFGWYQAISALIV
                     LLGVYLANQRKGSGKKV"
     gene            complement(6138..6773)
                     /gene="gldD"
                     /locus_tag="DHV98_04200"
     CDS             complement(6138..6773)
                     /gene="gldD"
                     /locus_tag="DHV98_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldD"
                     /protein_id="HCK05563.1"
                     /translation="MVDKNITAKVSNQESSAEIFKRLISPKSYLKIWAYALFGIILLS
                     CQDQVVVKPAAFLRLDFPEPKYGHYASDCPFEFDLNEFARPEAKERCALNLDYPFMGA
                     TVYLTYQGVNGDLTQLLSDAQKLTYDHTIKATEILEQPRVDPQHEVYGMYYQIDGPAA
                     SHAQFYLTDSTRHFLTGALYFNTKPNFDSLYPAIHYVRKDIRRIMETLRWQ"
     gene            complement(6775..8152)
                     /locus_tag="DHV98_04205"
                     /pseudo
     CDS             complement(6775..8152)
                     /locus_tag="DHV98_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227572.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated protein GldE"
     assembly_gap    7005..7067
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(8173..8652)
                     /locus_tag="DHV98_04210"
     CDS             complement(8173..8652)
                     /locus_tag="DHV98_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCK05564.1"
                     /translation="MSGTLNKVMLIGHTGDAIKMTYFEGGGCIGRFPLATNETYNNRT
                     TGERVTNTEWHNIVVRNKGAEVCEKYLKKGDKVYIEGRLKTRKWTDDQGNDRYSTEIQ
                     CTDFTFLTPKSSDSMGSDQMASGSAAAYGNGANASNNPYGSSNQGAPQAEEEDDLPF"
     gene            complement(8696..9772)
                     /gene="mutY"
                     /locus_tag="DHV98_04215"
     CDS             complement(8696..9772)
                     /gene="mutY"
                     /locus_tag="DHV98_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008866159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HCK05565.1"
                     /translation="MDKILVSWYLENKRDLPWRWAKNPYQVWLSEIILQQTQVVQGLP
                     YYEKFITRFPSVEKLAQASEQEVLKLWQGLGYYSRARNLHDTAQWVSHALNGVFPQSF
                     KELLSLKGVGVYTASAIASICFDEPKAVVDGNVYRVLSRVFGIDLPINTASGIKRFQE
                     LADQQLFEKDPGTYNQAIMEFGALQCVPKNPDCSICPLSKNCIAHATGHVGTLPVSVK
                     KVKVKTVYYNFLVVQDEQGKIWMRPRPADGIWPNLYEFPLIESNTPLDVGQMLAKANG
                     LIKGEAHTIQDSIQDSIQDLELVHPAPWVHRLTHKKLMVVFWRGVSKNALPEVYAPKE
                     VFELPVPAVIARFISEAFPFARQN"
     assembly_gap    9951..10004
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <10005..10225
                     /locus_tag="DHV98_04220"
     CDS             <10005..10225
                     /locus_tag="DHV98_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HCK05566.1"
                     /translation="VEAFMGEVKQSLESGENVYLRGFGSFIIKTRAEKTGRNISKNTT
                     IKIPAHNIPAFKPAKVFVEGVKASVKAK"
     gene            10534..>11237
                     /locus_tag="DHV98_04225"
     CDS             10534..>11237
                     /locus_tag="DHV98_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HCK05567.1"
                     /translation="MNYELIVRSSSQQVDFALLKDGKLIELHKEAEDNKYSVGDVFIS
                     KVRKTVPGLNAAFVNVGYEKDAFLHYHDLGPKILSTLDFVKRVSTGKLRDYSLKEFPL
                     QKEIDKNGGINDAIKNNQSILVQIVKEPISTKGPRISSELSLAGRYIVLVPFSDRVSI
                     SQKIESNEEKERLKRLIQSIRPKGFGVIIRTVAEGKKVAELDRDLQNLIDRWTAMCKK
                     LHRAHLPSKVLSEMNRG"
     assembly_gap    11238..11358
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <11359..12216
                     /locus_tag="DHV98_04230"
     CDS             <11359..12216
                     /locus_tag="DHV98_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HCK05568.1"
                     /translation="LSEMNRGSSIIRDMLNDSFSAIHIDDETLFYQIKDYVQAIAPKQ
                     ENIVKLYDAKVPIFEKFGIERQIKTSFGKTVSGAKGSYLVIEHTEALHVIDVNSGNRS
                     NKSNTQEDTALEVNLLAASEVARQLRLRDMGGIIVVDFIDMAKAEHRKKLFNHLRDEM
                     SDDKAKHKILPPSKFGLIQITRQRVRPEVNIKTREINPNAGESDEIEAPIVVVQKIGE
                     ELKKLINKDYKKITLNTHPFIAAFLTKGFPSVRTKWFLEHKQWIRIQPRDAYTYLEYH
                     FQDEKGNDL"
     gene            12349..>12706
                     /locus_tag="DHV98_04235"
     CDS             12349..>12706
                     /locus_tag="DHV98_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009416247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecX"
                     /protein_id="HCK05569.1"
                     /translation="MKKSVTSYTVEQAKEKLERYCAYQERSHKQVEEQLLKMRMIPQA
                     QEVIITHLIQHNFLNESRFALAYSRGKFRIKKWGKKRITQGLKQHGVSAYNIKIGLAQ
                     IDPEAYRDTFDVLVKKR"
     assembly_gap    12707..12960
                     /estimated_length=254
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(13020..13904)
                     /locus_tag="DHV98_04240"
     CDS             complement(13020..13904)
                     /locus_tag="DHV98_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin"
                     /protein_id="HCK05570.1"
                     /translation="MKLKSIDRVCGLSKKDFLEQYFKPQKPVIIEDAIIDWPAYKRWS
                     FDYMRDVAGDKIVPLYDDRPVDHKDGFNEPHATMNMAEYIDLLQREPTKYRIFLWNLF
                     KEVPALQNDFKNLDLGLSILKGLPMLFFGGQKSYTFMHYDIDLANIFHIHFQGEKRVV
                     LFDQKQTEFMYKVPHSLIVREDIDFANPDYEKWPGLCHVHGFEGTLKHGDVLYMPEGY
                     WHYMQYISAGFSMSLRAMPRKTGHLAKALYNIFIMRYYDQLMRRLKGQAWIDYKNEQA
                     IVRTKKNIVRFQASAKAS"
     gene            complement(13904..>14311)
                     /locus_tag="DHV98_04245"
     CDS             complement(13904..>14311)
                     /locus_tag="DHV98_04245"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05571.1"
                     /translation="RGLLTQGWEANVQYALTGPNMTHNFQLSYTQIDDNLSINPGEFS
                     RYSINSFKHRAIGQWRALWSKHWESTIMHKYGKREGQEAFDVTDVSLLYHQSRYTLRL
                     AAENIFGTDYSETNLVPMPKGVVLLELIYKLTP"
     assembly_gap    14312..14374
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<14375..>14872)
                     /locus_tag="DHV98_04250"
     CDS             complement(<14375..>14872)
                     /locus_tag="DHV98_04250"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05572.1"
                     /translation="DNSWGTTGIGLDLAQTYLSSNNLGNRSRFASTLFIEHRWQFFQS
                     KLDVIPGIAATSFSDFGTYAYPGIDVGYAINRHWRIYSNMGYTYRIPTYTDLFYSDPN
                     TLGDAELEPEKALAYEVGLRLKDGPLTLNAAWFRRDANNLIDYVKNNAEDLWQAANVR
                     GLLTQG"
     assembly_gap    14873..14992
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<14993..15923)
                     /locus_tag="DHV98_04255"
     CDS             complement(<14993..15923)
                     /locus_tag="DHV98_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008639733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05573.1"
                     /translation="MKFLNKTLVGTIIALVGVMSSPVLGQNVLSSTNQGQSKDSIIQW
                     PESLDEVLLSGTRXLAELLQQEAGVDIRRRGPMGSQADLYIRGGSFDQTLLLIDGIKL
                     EDAQTGHHTLNAAIPLELIERIEIIKGPAARVYGQNAFTGAINIVTKSDFNDGLDLRF
                     SGGSFEQINGGFTAYKSLDNSAHMVHVSRYTSKGYRYNTDYDQSNYTLKSTFNKRTQP
                     INFLASLSERAFGANGFYASPAATDQFESTQTSLVGVQTQVKRKGWIWTPRVYWRRNQ
                     DEYIYLRNDPTVYRNLHTTNKLAAELHGQWDNSW"
     gene            complement(16032..16307)
                     /locus_tag="DHV98_04260"
     CDS             complement(16032..16307)
                     /locus_tag="DHV98_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05574.1"
                     /translation="MYLEIVTPEASLVQGEVSSVSVPGADGAFQMLEYHAAIVSTLGA
                     GEVKFVGQPKIAEAYKSKFTQKDGAWHLAINSGTVQMVDNKIIVLAD"
     gene            complement(16328..17143)
                     /gene="atpD"
                     /locus_tag="DHV98_04265"
                     /pseudo
     CDS             complement(16328..17143)
                     /gene="atpD"
                     /locus_tag="DHV98_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988809.1"
                     /note="internal stop; incomplete; missing start; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
BASE COUNT         4855 a         3741 c         3390 g         4480 t
ORIGIN      
        1 cgaatatacg cgcccaatgg cgccattgat ccatagaaca atccataatt ccatccccaa
       61 tagtggccgg acgcaaaata tcgagcgcgg gcactccttg atcaaacacc tggatttggg
      121 ccataacttg agcctggtca atgcctaatt cttgaatatc ttttaaatca cgagggtcaa
      181 acatgaagat tgggccaggt gttactgatg aatttacagg cttgatccat tctttgctcg
      241 tgggctccat tgagttcaat aaaatgggcc tttctttgaa tcaaatccgc tttaaagata
      301 ctgaataagg cttcccgttg caagggttga tcgcgtaagt catcggcttg ccaaggaaag
      361 tccggctgag tcaacaaata aaccgtttgc cccattggtt ggtgcatgtc agacggaatt
      421 tccccccaat tcatcccaaa ataataggta aagtaaacgg ccaattgata aatatttgtg
      481 tccaaaaaca ccgggcacag acccaaatga gccgcagagg attttgctcg cgccagggct
      541 aagccttctt gctgtgccct aaattgacct ttgatcaagg gcattatatc ttgttgagca
      601 ataactcgat tttgggtatc ccaaacatcc tgtgcataag tcctaaggta ttcaggaatc
      661 aaaaccccgg aataatgcgc tgcaagggcc tttgacagcg ttgatttacc gctgcattct
      721 ggaccataga gaacaatttg gggcgatatg atttgatctg agggcgtaat gaaacgataa
      781 atttaaaggg atgaatacga ctttagcgtc tttcgccaag cctgcaaacc ttgaatcgca
      841 agcagggtaa atataaggta ttgcagtgag agcattccca gtccacgata agcgtaaagc
      901 gggacggtaa tgacatcagc gatgatccac agaatccaat gttctatttt tttatgggcc
      961 atataccaca tcgcggtaaa gaaaatacct gacgtcacca tatcgacata gctataccac
     1021 tgtatcgaat agtcaaaggc ttggtagacc ccgaaggtca cccccacggt aagtaaaaaa
     1081 aatgcaaagc cgacccaacg ctcttttagg ttggtttgac tcataggata cttaggggta
     1141 tcgtcattat agcgggtcca ctgataccaa ccgtataaac tcatcaggct gtaatagaca
     1201 ttcatcatca tgtcgccaaa atactgagct tgatacaata aataaaccgt caaagcggtc
     1261 ccgacaaggc ctgtgggata aaccagcaca tgagctttct tggcatacca tacactgagt
     1321 attccgcaaa taaaggcaat ggattcaatg acgatttgtc cgattccggc ggttctgtag
     1381 ggccctgtaa gaaattcgat tagcgtgtcc atcttcctat gaattggtca aagataaagc
     1441 ttcttcaaga gccgtgccga taacgaccat atcggcacca gcagcccaag ccgactcaat
     1501 ctgctgagtt tctcgcagac cacccccgac gatcaagggc atggccgtct gttttttaat
     1561 cctattgatc aatgttgtag gaatcggaat tttagcccca ctacccgcct ctagataaat
     1621 ggatttggcc cccatataaa acgcggccat agcgcgattt acaatcttat caggatcact
     1681 taaagccatg ggaagggtct tagtcaccct agccacagca ctctgtgtcc ctccatcgat
     1741 gagtaaatac ccggtagcaa tggtaaataa atccattgct cgaagttggg ccgccgcgcg
     1801 ttcctgctgg catatcagat attccggatt atctccggaa acaagagata aaaataacaa
     1861 ggcgtcagcg gccggactta tttgctcggc gtctccagga aaaatccaaa cggggaagtc
     1921 cacgagcctt ttgatggcct caatcaagtt atgggtcact ccaggagcca cactactgcc
     1981 tccaacaaaa atatgtgtgg ttgcctcggg taagtgactt agtaatttag ggagtaaatc
     2041 ttgcccacat ttgtccggat caatgagtac tgcaagttgc ttttttccct tttggatgtc
     2101 tgtcttccat cgatctaagg ggctcatagg gtttttcatc tcaatcatga ggcgataggt
     2161 ctttggtcat cccgcaaata tattggtcgg tgataaatcc ttgatataaa aaatgacgtt
     2221 cttgaccttt tgttattttt cctttagcct gcacatatgg ggtcatttct gaggggaggc
     2281 ctatggctac ctccccctct gtgcgccatt ggctgagttc aatatccctt aaaaaaccta
     2341 aacccggcgt cgctgccatt ttataaatac tttctttggc cgtccaaaca taggtgaatt
     2401 gatctaccgt ttcatgggta atctcactga gttccgggct tataccggga caaaacttat
     2461 gggcaatccg caaaattttt gggcgtcgta attcgatgtc aatccccaca ggatagggcg
     2521 atacaataat ggccgagcgc tgatgggaat gagatattga aatatattgc cctgtgtgca
     2581 gatatggttt ccccaaggga tcataataca gatcctcatc ggttagattg gcacactgga
     2641 gcaaggcacg cacactgaga aacgccttgc gatgcactgg acttttcata gaattaaacc
     2701 gcgctttact ttcagccctc atcacagtaa tggctgacaa ttggtccaat gtttctgaga
     2761 tatcccaaag gtagacagtg gcccctggcc atgggttaat cgttcttaaa agtggcattg
     2821 agtctaaaaa atgttccgta cttttgtcgg caaattcgaa tccatcaaat ataacaatat
     2881 gcccacaaac acagtgcctt acgtaccgtt taaagtgaaa gacatgtccc tagcttcttg
     2941 gggacgcaaa gaaattcagc tcgcagaagc agaaatgcca ggacttatgg ccctacgcgc
     3001 cgaatacggc gacagcaagc ctcttgctgg agcccgcatt gcaggttgtc tgcacatgac
     3061 cattcaaacc gccgtgctga ttgaaaccct gcaggctctt ggcgcagaag tcacttggag
     3121 ttcttgtaat atcttttcaa cccaagatca ggcggccgca gcgatagcgg aggccggcac
     3181 tgccgtgtac gcctggaaag gcatgaacga agaagaattt gactggtgta tcgagcaaac
     3241 gctgtttttt ggagaagatc gccagcccct gaatatgatt cttgacgacg ggggggattt
     3301 aaccaatatg gtcttggacc gctacccaga acttgttgcg gggattaagg gactcagtga
     3361 agaaaccact actggcgtgc atcgtctcta cgagcgtatg gaaaacggca ccttgccgat
     3421 gcctgccatt aacgtaaacg acagcgtcac caaaagtaaa tttgacaaca aatacgggtg
     3481 taaagaaagt gctgtggatg ccgtgcgccg tgccacggac attatgctcg ctggaaagcg
     3541 tgtggtggtt tgtggttatg gtgatgtggg gaaaggaacc gccgcttcat tccgcggggc
     3601 tggagccatc gttaccgtaa cagaaatcga cccgatttgt gcgcttcagg ccgccatgga
     3661 tggctatgcc gtgaaaaaat tggagactgt aattgatact gccgatatcg ttatcacggc
     3721 aacaggaaac aaagacatcg ttcaaggggc gcattttgcc cagatgaaag acaaaaccat
     3781 cgtctgtaat attggtcact ttgacaatga aatcgatgta gcttggctta aagctaatgc
     3841 cgatggacca aaagtagaga tcaaacctca ggtcgataag tacaccttaa atggaaaaga
     3901 catcatcctt ttggctgaag gacgcttggt gaatttgggt tgtgccactg ggcacccaag
     3961 ttttgtgatg agtaattcat ttaccaacca aactctagca caaatcgagc tttggaacca
     4021 tacagataag tacgaaaaca aagtttatat gctcccgaag catttggatg agaaagtcgc
     4081 ggccttacac cttgagaaga tcggtgtcga gctcacccag ttgcgcagcg atcaagccaa
     4141 atacatcggg gtcacccctg aaggaccatt caaaccggag tactatcgat actaacctca
     4201 gtttgatttg ttcaagacaa caaaaaaagc cccatcaaat gatggggctt tttttagcta
     4261 tcgaaaataa tttttaggct tcgccttgtg ggacgatgga aacaaaagat tttccgcctt
     4321 ttttcttttc aaattttaca gtaccgtcca ctctagcgtg taatgtatgg tcttttccaa
     4381 gatatacatt ctcccctggg tgatgttgtg taccgcgttg tcttacgatg atatttccag
     4441 caattgcagc ctgaccacca aaaatcttaa ccccaaggcg tttcgattct gattcgcgac
     4501 cgtttttaga actaccaact ccttttttgt gagccatttt ctttcggttt tataggttat
     4561 acatttttga ttgcctcaat aaggtctgcc ttcttcattg ctgaaattcc ggcaataccc
     4621 ttatcctttg caagatcttt tagctgagcc acggtcattg aatcgtagtc cactgcatca
     4681 tcagctttgg ctgcctttgg cgcctgagct tttggggccg cttctacttt tggtgcagcc
     4741 gcttttgctt taggagccgc tttttgcgca ccactcgcca cgattccttc gataaggatt
     4801 tcagtgagcg cttgacgatg cccattcttt ttgcggtatc cttttctgcg tttcttttta
     4861 aacacaataa ctttgtcacc ttgaaggtgc tttaagactt ttgcaccaac ttgtgcgccg
     4921 tctatagccg gggcgccaat agttactttg tcaccttcac caatcaaaag aacgttgtca
     4981 aatgacactt ttgcgccctc ttcttctggc aaacgatgga caaaaacctt ttggtctttc
     5041 gcaactttaa attgctgccc tgctatctct acaattgcat acatagcgta tcgattaatt
     5101 tttacttttt taattccttg tcctcaacac aatatggctg aggctaaggc gggtgcaaat
     5161 ataaatgtaa aatttaatac cacaaaggta tttttacctt aaagcaatag acgttttagc
     5221 agctaatttt gagatggaga ccacgctaaa cctttttgcc tgaacctttt ctttgattcg
     5281 ccaaataaac gcctaataag acaatcaggg cagaaatggc ttgataccat ccgaatcgtt
     5341 caccgtcaaa tatcccccac aaaacagcca caacaggcat tgtgtaagtg actgaagacg
     5401 caaatacagg actcgaaatt tggatcatct tattaaagag tattttggcc aaagcggtcc
     5461 caaataaagc cagtatcgca atatatcctg tagacacttg aacttctggc accgtccaaa
     5521 tttcatcaaa ataccccgta ccaatcagga tcaacaaagc gggaatcaca atcaccacaa
     5581 aatttcctgt ggcaatggcc aaaggcgata attcattgag gtatttcttg agtatattga
     5641 cgtttaacgc ataacccact gaggcaacaa gcactaatat cccgtaccaa tgattttgat
     5701 caggattaat gtgcgcccct gccattatga gcatgatgga tcccagcaac ccaataaaga
     5761 ccccaatcat ttgacgcctg gtggtataaa tactaaagac caggtacccc aatacggccg
     5821 tcgcaagcgg cgttaaacta ttgagtatcg aggccacagc actatcgata tgtttttgtg
     5881 caaaggcgaa taaaaaagca gggaaaaaag ttccaaataa agccgataag gcaatccatt
     5941 tccactgtag ttttttaatt tgtttaagcg aaggcagccc cacggaaaac aagatgattg
     6001 ccgtaagtac agtacgcaag gaacccaatt gaatttgcgt aagccccacc aacccctttt
     6061 taatcagaat aaaggacgtc ccccaaatca cagaaagaac gatcagataa agccattttt
     6121 tatccatacc agaagtatta ttgccacctt agggtttcca tgatccggcg tatatccttc
     6181 cgaacataat ggatggcggg atacaaggaa tcgaagttgg gtttggtatt aaaataaagg
     6241 gccccagtta aaaaatgacg ggtactgtcc gtaaggtaaa attgagcgtg cgatgctgct
     6301 ggaccgtcga tttgataata cataccataa acctcatgct gaggatccac ccgcggctgc
     6361 tctaatattt cagtggcctt aatcgtatga tcgtaggtga gtttttgggc atcgcttaaa
     6421 agttgagtca aatctccatt caccccttga taggtcaaat aaactgtggc gcccataaat
     6481 ggataatcca gatttaacgc gcagcgctcc tttgcttcag gccgggcaaa ctcatttaaa
     6541 tcaaattcaa agggacagtc cgaagcgtaa tgaccatact ttggctcagg aaaatccaag
     6601 cgtaaaaagg ccgcgggctt aaccacgact tggtcttgac aactcaatag aattattcca
     6661 aaaagcgcat atgcccaaat ctttaaatag ctctttggac ttatgagcct cttgaaaatt
     6721 tcggcacttg attcttgatt gctcactttt gcggtaatat ttttatccac catttcactc
     6781 ttgtatcgta agcttgattt ggttaatgcg cttgccttga aaagattcta tcacaaagtg
     6841 ataccgccca aaaattacga tttcgtcttt ttttggaaag cctttagtca attcgagaat
     6901 aaatccagct agagactctg cctcgccctt agcctcttca aattcttttg ggtcttcgag
     6961 ttgaatgact cgataaaaat cttttaatgg cgtcttgcct tcgannnnnn nnnnnnnnnn
     7021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnttg ccttcgaaca
     7081 caaaatttcg atcatctagc tttgaaaaaa ccaaatcttc gtcatcaaat tcatcagtta
     7141 tttccccgac aatttcttca atgatatctt ccaaagtaat caagccgctg gttcccccgt
     7201 attcatctac cacaatggct aaatgcattt tcatttgttt gaactcgttg agcaaatcat
     7261 ctaatttttt attctcaggc acaaagtacg gagcgcgcag cagtgccgac caattaaagt
     7321 cctttttgtc aaaatagggt aaaaggtctt tgacgtaaag aagtcccttt atctgatcaa
     7381 tggacgcctc aaataccgga atacgagagt aaccgtgttt gagtatgtcc gccaaaactt
     7441 cttgatatga ggcctggata tcgagggcaa atatatccat acggggacgc atgacgtttt
     7501 ttgtgtcggt cgctccaaaa gttacgatac cttgaagaat cttctgttca tctgttgagg
     7561 tttcttcatc agaggtcagc tcaagcgctt gactcagctg gtcaacacta atgcttaatt
     7621 tttgttttga aaatctgcct tccaaataaa cggtcgcatt gcgcatggga cgactcagag
     7681 gcgtgaagag cccaaacaag atctgaatgg gcatggccat aaaggttgca aaacgcagct
     7741 tgttccggct ggcatagacc ttagggagaa tctccccaaa gagtaggatt aaaaaagtaa
     7801 ccagtccaac ctcaaccaaa aatctgagcc agtctggatc aatgcttgaa aaaaacgggc
     7861 cgactacagt atcaaaaaca agaacgatgg cgatattgat taaattattg gcaatcaaaa
     7921 tcgtggccag caatcgttta ggcgtgtcca aaagttgggc caccgtgttc atttgtttcg
     7981 aacggcctgc ctcatcttca ggattaagat ctgctgtcgt taaggagaaa aatgcaattt
     8041 ccgcacctga aattagggca gagcataaca aaaggaacat gatcccccca aaccctaaaa
     8101 gctcaggaaa agcgagtgat gaaatgaata aactcggggg ctctggttcc acaaattaaa
     8161 atttaacgag acttaaaagg gcaaatcatc ttcttcctcg gcctgaggcg ccccctgatt
     8221 tgaagacccg taggggttat tagaagcatt agctccgtta ccataagcag cggcagaccc
     8281 tgaagccatt tggtctgacc ccatactgtc actacttttt ggcgttaaaa aggtaaagtc
     8341 cgtacattga atctcagtgc tgtagcgatc atttccttgg tcatcggtcc actttcgggt
     8401 ctttagacga ccttcaatat agactttgtc cccttttttt agatattttt cgcaaacctc
     8461 cgccccttta ttgcgcacaa caatattatg ccactcagtg ttggtgaccc gttcaccggt
     8521 ggttcgattg ttataggtct cgtttgtggc taaaggaaat cggccaatac aaccccctcc
     8581 ttcaaaatag gtcattttta tcgcatctcc agtatgacca atcaacatca ctttattcag
     8641 ggttccactc atcgctttac ttttttacaa aattaactaa ggtcatctaa tataactaat
     8701 tttgacgggc aaaaggaaat gcctcagaaa taaaacgggc tattacagca ggaacaggca
     8761 gttcaaaaac ttccttgggc gcatagactt caggcaatgc gtttttagac acgccccgcc
     8821 aaaatacaac catgagtttt ttatgagtca agcgatggac ccagggcgcc ggatggacta
     8881 attctaaatc ctgaatcgaa tcctgaatag aatcctgaat cgtgtgcgct tcacctttaa
     8941 tgagtccgtt cgctttggcc agcatttgcc ccacatctaa gggcgtattc gattcaatta
     9001 acgggaattc ataaagattc ggccagatcc catcagcggg gcgaggacgc atccaaattt
     9061 ttccctgttc gtcctggacc accagaaaat tgtaatacac cgttttgact tttacttttt
     9121 tgaccgaaac agggagcgtt ccaacatgac ctgtagcatg agcgatacaa tttttagaca
     9181 gtgggcagat cgaacaatca gggtttttgg gaacacattg taacgcgcca aactccatta
     9241 tggcctgatt ataagtcccc ggatcctttt caaataattg ttgatccgct aactcctgaa
     9301 atcttttaat gcctgaagcc gtgttaatgg gaaggtcaat cccaaatacc cgactcaata
     9361 ctcgatagac attaccatcg accaccgctt tgggctcatc gaaacaaatc gatgcaatgg
     9421 cacttgccgt atagactcca acgcctttta aggacaataa ctctttaaag ctctggggaa
     9481 agaccccgtt aagcgcatga cttacccact gggcggtatc gtgtaaattc cgggctcttg
     9541 aataataacc caatccctgc cacaatttaa ggacctcttg ctcgctggcc tgagccaatt
     9601 tttcaacact cgggaagcgg gtgatgaatt tttcatagta aggtaaaccc tgaaccacct
     9661 gtgtctgttg cagaataatt tcagagagcc aaacctgata tggattttta gcccaacgcc
     9721 agggcaagtc acgcttgttt tctaaatacc acgaaaccag tattttatct attttaaatt
     9781 gggcaggctt cacctgtcaa aaatagggta tatgtattta tattttaata ctttacgatt
     9841 tgattatttg attttaaaat cattatattt gcccactcga aaaacgagcc tatcacatat
     9901 caattatatc acatttaaaa agaacttcag aatgaccaaa gcagatatcg nnnnnnnnnn
     9961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnacgttg aggcctttat
    10021 gggtgaagta aagcaatctt tggagtcggg tgaaaatgta tatttgagag gttttggaag
    10081 ctttattatc aaaactagag cagaaaaaac cggaagaaac atttcaaaaa acacaacgat
    10141 aaaaattcca gcccataaca tccctgcatt caaaccagca aaagtttttg ttgaaggggt
    10201 taaggccagc gttaaagcca aataaatatt cattagttcg gcctagtcga gcattaaatc
    10261 atacaccgta tgccaagtgg taaaaaaaga aaaagacaca aggttgcgac gcacaagcgc
    10321 aagaagcgca gacgcgcaaa ccgccacaag aagaaaaagt aatttttaaa ttaccttttc
    10381 gattgatgtt ctttgacata gaaataagtt catacaattt gcttatttct acaggtttta
    10441 tcaaaatcaa aatacctttg attttgaccc tgtgttaaaa attgtttaat ccatcccgtc
    10501 caatattttg ggctggaata aaaattaatt accgtgaact acgaattaat agtaagatcc
    10561 agttcacaac aagttgattt tgccctttta aaagatggaa aactaatcga actccacaag
    10621 gaagcagagg acaataaata ttcggttgga gacgtgttta tctccaaagt aagaaaaact
    10681 gtccctggtc tcaatgccgc atttgttaat gtgggttatg aaaaagatgc ctttttgcat
    10741 tatcatgatt tgggacctaa aattctgtcg actttagatt tcgtaaaacg tgtaagcaca
    10801 ggaaaattaa gagattactc cttaaaagaa ttcccattac aaaaagagat tgataaaaat
    10861 ggtggcatta acgatgccat aaaaaacaat caatcaattc tggtacaaat cgtaaaagaa
    10921 cccatttcca ccaaaggtcc gcgcatcagc tcggaacttt ctttagccgg tcggtatatc
    10981 gttttggttc ctttttctga tcgtgtttca atttcacaaa aaattgaatc caatgaagaa
    11041 aaagagcgct taaaacggct gattcagagc ataagaccaa aaggatttgg ggttattata
    11101 cggaccgtag cagagggtaa aaaagtagca gaactggata gagatttaca aaatctcata
    11161 gatcgctgga cagcgatgtg taaaaagcta catcgggcgc acctcccaag taaagtgctc
    11221 agtgagatga atagaggnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11341 nnnnnnnnnn nnnnnnnnct tagtgagatg aatagagggt catccattat tcgagatatg
    11401 ttgaacgatt cattttcggc cattcatatc gatgatgaaa ccctatttta tcaaataaaa
    11461 gattacgtgc aagccattgc accaaaacag gagaatattg tgaagctata tgacgccaaa
    11521 gtacccattt tcgaaaaatt tggaatcgaa cggcagatta aaacttcatt cggcaaaaca
    11581 gtttcgggag caaaaggttc ctatttagtt atcgagcaca ccgaagcact ccatgtcatt
    11641 gatgtcaaca gtggtaaccg aagcaacaag tccaacactc aggaggacac tgctttggaa
    11701 gtcaatttat tagcagcaag cgaagtcgcc cgtcaactca gattacgaga tatgggtggc
    11761 atcattgtag tcgacttcat cgatatggcg aaagcggaac accgcaaaaa attattcaat
    11821 catcttcgcg atgaaatgag tgatgataaa gccaagcaca aaattcttcc ccccagcaaa
    11881 tttggactca tccaaatcac aagacaacgc gtcagaccag aggtcaacat caaaacgcga
    11941 gaaatcaacc cgaatgcggg tgaaagtgat gaaattgaag ccccaattgt tgtggtacaa
    12001 aaaattggcg aagagctgaa gaagcttatt aataaagact ataaaaagat aaccttaaac
    12061 acacatcctt ttatagcagc ctttttaacc aaaggctttc catctgtgcg caccaaatgg
    12121 tttttggagc acaaacaatg gatcagaatt caacctagag atgcttacac gtacctagaa
    12181 tatcatttcc aagacgaaaa aggaaatgat ctatagaact aaaacccctc cccgacagga
    12241 ggggtttttt tatgacctgt ttttataaat tccgtgatcc ttttaccatt gtaatacatc
    12301 atgactgggg gcgcacttcg ctcagtacat attgattata tttattgtat gaaaaaatcc
    12361 gtgacttctt atacggtaga acaggccaaa gagaaactcg aacgctattg tgcctatcag
    12421 gaacgttcac acaaacaggt tgaggaacaa ctgctgaaaa tgcgcatgat tcctcaggcc
    12481 caagaggtga ttattacgca tttaattcaa cataattttc tcaatgaatc gcgtttcgcc
    12541 ctagcgtaca gtcggggtaa atttcgcatc aagaaatggg gtaaaaaaag aatcactcaa
    12601 ggactcaaac agcatggcgt aagtgcctat aatatcaaaa taggactggc acaaattgac
    12661 cccgaagcct accgggacac ctttgacgtg ctcgtcaaaa aaaggcnnnn nnnnnnnnnn
    12721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12961 aagaaaaagc gaaaattatt cgactattta gcgtaccgcg ggtgggaaac ggaacttatt
    13021 tacgaggcct tagcgctcgc ctgaaaacga acaatatttt tctttgtccg aacaatagcc
    13081 tgttcatttt tataatcgat ccatgcttgc cctttaaggc gacgcatcag ctgatcgtaa
    13141 tagcgcatga taaaaatatt gtacagcgcc tttgccaaat gacctgtttt gcggggcatt
    13201 gcgcgtaaac tcatcgaaaa cccggccgat atatactgca tatagtgcca ataaccctcg
    13261 ggcatataga gcacgtctcc gtgctttaat gtcccttcaa atccatgaac atgacacagc
    13321 cctggccact tttcataatc gggattcgca aaatcaatgt cttcacgaac aattaaggaa
    13381 tgaggcacct tatacataaa ctcagtttgc ttttgatcaa ataaaacaac tcgtttttcg
    13441 ccctgaaaat ggatgtgaaa gatattggcc aaatcaatat cgtaatgcat gaaggtgtag
    13501 cttttttggc cgccaaaaaa cagcatgggc aaccctttta atatggataa tcctagatca
    13561 aggtttttaa aatcattttg cagtgccggc acctctttga ataaattcca caaaaaaata
    13621 cgatacttgg tgggctcacg ctggagtaaa tcaatgtact ctgccatgtt catagtggca
    13681 tgaggctcgt taaatccatc cttgtgatct accgggcgat cgtcatacag gggcactatt
    13741 ttatcccccg caacgtcacg catataatca aaactccaac gcttgtaagc gggccaatcg
    13801 attattgcat cttcaataat tacaggcttt tgaggtttga aatactgctc tagaaaatcc
    13861 ttttttgaga gtccgcaaac acgatcaata gactttaatt tcatcaaggc gttagtttgt
    13921 aaattaattc tagcaggacg acacccttcg gcattgggac taagttggtc tcactatagt
    13981 ctgtgccaaa aatattttct gctgccaaac gcaaggtata acgcgactgg tgatacaata
    14041 gggaaacatc cgtaacatca aatgcctctt gaccttcacg ctttccatat ttgtgcatta
    14101 tggtcgattc ccaatgctta gaccaaagcg cacgccattg tccaatggct cggtgtttaa
    14161 aagagttaat cgagtatcga gaaaattctc caggatttat tgaaaggttg tcgtcgattt
    14221 gcgtataact gagctgaaaa ttatgcgtca tatttggccc cgtcaatgca tattgaacat
    14281 tggcttccca gccttgagtc aacagacccc gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    14341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngccttg agtcaacaga ccccgcacat
    14401 ttgccgcttg ccaaagatcc tcagcattat ttttgacata atcaatcagg ttattggcgt
    14461 cacgtctgaa ccaagcggca ttaagggtaa gggggccatc ctttagtctc aaccctactt
    14521 cataagccaa tgccttttct ggttccaatt ccgcatcccc taaagtattg gggtcgctat
    14581 aaaaaagatc ggtatacgtg ggaatccgat aagtatagcc catatttgaa taaattctcc
    14641 aatggcgatt aatcgcataa cctacatcga taccaggata agcgtaggtg ccaaaatcgg
    14701 agaatgaggt cgcggcaatc cctggaatca cgtccaattt actttgaaaa aattgccacc
    14761 tgtgctcaat aaataaagtc gacgcgaatc gtgaccgatt gcccaaatta ttactcgata
    14821 gataggtttg tgccaaatcc aaaccaattc ctgttgtccc ccatgaatta tcnnnnnnnn
    14881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    14941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncccatgaa
    15001 ttatcccact gaccatgaag ttctgcggca agcttattcg ttgtatgtaa attacggtag
    15061 acggtcgggt cattacgcag gtaaatatat tcgtcttgat tgcgtcgcca atacactcgt
    15121 ggcgtccaaa tccaaccctt gcgcttaact tgggtctgta ccccaactaa gctggtttgc
    15181 gtggactcaa actgatctgt ggctgctggg gatgcataga acccattggc gccaaaggcg
    15241 cgctctgaaa gactggctaa aaaatttatc ggctgagtgc gtttgttgaa cgtactcttt
    15301 agcgtgtaat tagactgatc gtaatccgtg ttgtagcggt acccctttga ggtatagcgc
    15361 gaaacatgaa ccatatgtgc gctgttatct agggacttat acgccgtaaa cccgccattg
    15421 atctgttcaa aggaaccccc gctaaagcgc aaatcaagcc catcattaaa gtcggatttc
    15481 gtgacaatat taatcgctcc agtaaaggca ttttgcccat aaacacgtgc tgctgggccc
    15541 ttaattatct ctatgcgctc aattaattct aaagggattg cggcatttaa cgtatgatga
    15601 cctgtttgcg catcttcgag tttaattccg tctatgagta aaagcgtctg gtcaaaactg
    15661 cctccacgaa tgtagagatc cgcctggctg cccataggcc ctctgcgccg aatgtccaca
    15721 ccggcctctt gttgtaaaag ttctgccaan ngtcttgtgc cagagagcaa cacctcatcc
    15781 agagattctg gccattgaat tatagaatct ttgctttgcc cttggttggt cgaggagagt
    15841 acattttgtc ccaaaaccgg tgaagacata acgccgacca gggcaataat agttcctact
    15901 aaggttttat ttaagaattt catttaagca atttacgaaa ttaataatca agacattacc
    15961 cgctgtacaa caatcaattt catgaaaaaa gcctcaaata gaggcttttt taagaattgt
    16021 ctaggcgaaa cttagtccgc cagaacgatg attttattat cgaccatctg aacagttcca
    16081 ctgtttatgg ccaagtgcca agcaccatct ttttgggtga acttgctttt gtaggcctcc
    16141 gcaatttttg gttgtccgac aaactttact tctcctgcgc caagtgtaga aacaatggcc
    16201 gcgtggtatt caagcatttg aaacgcccca tcagcaccgg gaacactaac actgctaact
    16261 tctccttgaa ctaacgaagc ttctggtgtg actatttcta aatacatcgt atcttttttg
    16321 attctaatta tgcttcagca agcattttct ctccggcttc aatagcttct tcaatagtcc
    16381 ctttgaggtt gaacgcagct tcaggaagat gatctaactc accatccata atcatattaa
    16441 atcctttgat cgtatcctta atatctacaa gcacccctgg gatccctgta aactgctcgg
    16501 caacgtggaa cggttgagaa aggaaacgct gaacacgacg cgcgcgccct accgccattt
    16561 tatcttcctc cgacaattcc tccatcccta aaattgcaat gatgtcttga agctctttat
    16621 aacgctgtaa caactctttt acacgttgtg cacaagcata atgttctgcc cccaaaatat
    16681 cagcagtcaa aattcttgac gttgaatcca gcggatcaac tgcagggtaa atacccaact
    16741 cagcaatttt acgagacagt accgtggtcg catctaagtg agcaaacgtc gtcgctggtg
    16801 ctggatccgt aaggtcatct gcagggacat aaaccgcctg aacagaagta atcgatcctt
    16861 ttttagttga ggtaatgcgc tcttgcattg cccccatctc ggtagcaagg gttggttggt
    16921 accctactgc tgaaggcata cgtcctagaa gtgccgaaac ctaagaaccg gcttgtgtaa
    16981 atcggaagat attatccacg aagaacaata cgtcttttcc ttggccatct cctgctccat
    17041 cacggaagta ttccgcaata gtaagaccag acaaagctac tcgagcacgt gctcctggag
    17101 gctcattcat ctgaccaaag acaaaggttg ctttagattc ttt
//
LOCUS       DPUP01000122            7604 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14057,
            whole genome shotgun sequence.
ACCESSION   DPUP01000122 DPUP01000000
VERSION     DPUP01000122.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7604)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7604)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7604
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..2786)
                     /locus_tag="DHV98_04270"
     CDS             complement(<1..2786)
                     /locus_tag="DHV98_04270"
                     /inference="COORDINATES: protein motif:HMM:PF01578.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HCK05575.1"
                     /translation="MQKKIAAFLFSTRLTAFLFLLFAVAMGVGTFMDQGYPKPPSPYA
                     RELIFNAWWFEAIMVFFVINFLGNIARFRLYKKEKWATLTLHLSFILIIMGAFITRYI
                     GFEGVMHIREGATERTFLSDQTYISSYIDGDYQVNGVLMRRNVPAKLVRLSERLTPDT
                     QWSTDYNGKVVDFSVVDYIENAKEGLVEDPQGDLYLKLVESGDGTRHEHYLKAGSVAN
                     IHNLLYSFNQPTPGAINIEFTEGQYFIESPFAGDYMRMADQQKGSVEAQVKATLELRS
                     LYQIGGTAFVIPEPALRGTMDLVKANDSESTGNDAVIVQVATGDKTERIALLGGKGLS
                     PAPKVLEVGGLSIGLSYGSKVYELPFSITLNDFIAEKYPGTEKAYSSFKSKVTVNDET
                     GFFDYDIFMNHILDHGGYRFFQASFDPDERGTVLSVNHDWWGTYTTYLGYFLLYIGLM
                     AILFDRHTRFKDLEKMLDKVKRKKKALMFLPLVFLFTGMGAQNLPMSSQKADSIVLAN
                     AVNKAQAEAFGRLILQDNGRMKPVNTFSSELLRKISGKDQYKGLNPDQVFLSMTEFPM
                     MWYGIPILKLDWRNDSIKKILGVQPETKQIALIDLFDQRGNSKIDSYVADASAKTNPN
                     QFEKDFIKLYEKSYVLNEALGGGILKIFPIPGSVENKWISYQELSATALKSEDSLFIR
                     NIMPIYFQGLREYRQTGDESIANQALEAIERYQQTFGAAVYPAQSKVSAEIAYNRIDP
                     FNKLYRYFGLFGVLMLVVIMIQIFSPRSFWNYAVNLFKGLIWLLFIGMTLALAGRWYI
                     SGHAPWSDAYESVIYVSWATLFFGLAFGRKSDLTIASTAFVTSMLLWVAHLSWLDPQI
                     ANLQPVLDSYWLMIHVAVIVASYGPFTLGLILGSVVLLLMCLGTKQNREKIMLNINEL
                     TIINEMSLTVGLVML"
     assembly_gap    3025..3168
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3205..3828
                     /locus_tag="DHV98_04275"
     CDS             3205..3828
                     /locus_tag="DHV98_04275"
                     /inference="COORDINATES: protein motif:HMM:PF10728.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2520 domain-containing protein"
                     /protein_id="HCK05576.1"
                     /translation="MDLISDLNQLKAADLYIAAISDDAIADLSQKLPKDICLVHTSGT
                     VGMDVLSRQSKRGVFYPLQSFSKNHDVRFDQIPICLESNDTETMTLLEQVAHKLSKKV
                     VHIDSPQRLELHFGAVLVNNFTNHLYALSQNHLKNKGINFDLLHPLIEETTRKALTIG
                     ADSAQTGPAKRGDFKTIQRHVNLITDQQLKEIYNLLSDSIRNHSKSK"
     gene            3830..4363
                     /locus_tag="DHV98_04280"
     CDS             3830..4363
                     /locus_tag="DHV98_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013552087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonate 8-phosphate
                     phosphatase"
                     /protein_id="HCK05577.1"
                     /translation="MDTSYKTLLKDIKAFVFDVDGVLTDGTVIVDTQGQLLRNMNIKD
                     GFALKAAADKKYPMCIISGGTNPGVQKRLEGLGISEVHLGAHHKKELLMDFINRHDLT
                     ANQVCYMGDDLPDFEVMTMVGLACCPQDAVPEIKSIAQYISHRSGGKGCVRDIIEQVL
                     KTQGNWFDGGSVSGREG"
     gene            4375..5334
                     /locus_tag="DHV98_04285"
     CDS             4375..5334
                     /locus_tag="DHV98_04285"
                     /inference="COORDINATES: protein motif:HMM:PF01040.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05578.1"
                     /translation="MQPKFIKSFSGIILAFRPLNLLLLFGVHKIIQGVMIRQGLRREL
                     QINQGDLLITLDQLMWASIALAAAGYLINDYYDQRADSINKPKKAPHILISHKIIFWS
                     FWIGLNLCAIYLGFRIDGTVEDSNYGALFIVIGLMLFGYNLSKWSKFLIGPVMISGLV
                     ALNPXVLAQDLALTLYAKAVTSNSFEAVYDLFTPIGSWIWRIAFLGFLSNFIRELVKD
                     IEDINGDQNAGRRTLPIVLGIERTAKITVAIGLILVLSLGVFVAMALSTSVPLGIHLT
                     LALLLAIWMTYKSAKIERPSQAKSLSLTLKLLLILGLLSLFWL"
     gene            5345..5944
                     /gene="maf"
                     /locus_tag="DHV98_04290"
     CDS             5345..5944
                     /gene="maf"
                     /locus_tag="DHV98_04290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015364006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation protein Maf"
                     /protein_id="HCK05579.1"
                     /translation="MHHKEFEHFDVVLASGSPRRQELLRAMGIPHRVEVRTIEENYPS
                     ELKGHEITDFLAHKKAEAFDALQSNQIVITSDTIVWFEGRPVEKPRDRNHALAMLESL
                     SGTMHEVFTSVCFKTRNETKIVHDCTKVWIEQQSSQELEYYVDHFHPMDKAGSYGIQD
                     FFGYIAVSRIEGCYYNVMGLPTRLVYQNLVSLVKGPAKE"
     gene            5972..6520
                     /locus_tag="DHV98_04295"
     CDS             5972..6520
                     /locus_tag="DHV98_04295"
                     /inference="COORDINATES: protein motif:HMM:PF00924.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HCK05580.1"
                     /translation="MTLSKLYFELIATGVLVLILLITRALIMGLIRRFSHSEQIIDRR
                     VQLITKLINYVILGCALVGVFIIWGVDVRNLGVIVSSIFAVIGVAFFAQWSILSNITS
                     GVIMFFTFPYKIGDRIMIHDKEYEYIGIIEDIKTFHIVIVNDAGQRITYPNSLVLQKG
                     VSILNQNNNAPSDPSSNVSKQS"
     gene            6558..>6843
                     /locus_tag="DHV98_04300"
     CDS             6558..>6843
                     /locus_tag="DHV98_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010522477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05581.1"
                     /translation="MIDLSFKFKNISKALWLKSLWIGLALIYSGLHSSYAQAPVQWNS
                     SEIYHALDKFNTFGSVLYVGAHPDDENTRLITYFANHERAQTAYLSLTRGG"
     assembly_gap    6844..6997
                     /estimated_length=154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6998..>7604
                     /locus_tag="DHV98_04305"
     CDS             <6998..>7604
                     /locus_tag="DHV98_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006795320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LmbE family protein"
                     /protein_id="HCK05582.1"
                     /translation="TAYLSLTRGGGGQNLIGPELKSILGIIRSHELLQARSIDGGEQF
                     FTRALDFGYCKHPSEALDTWGHEEILRDVVQNIRRFKPDLVVNRFNHRTPGSTHGHHT
                     ASALLSIEAFNKANDPNYDPESAAQYGIWQPKRLFFNTSWWFYGSQEAFEAADKTNLL
                     EIPVGQYYAPLGASTGELAARSRSMHKSQGFGSLSSREQETE"
BASE COUNT         2117 a         1637 c         1518 g         2032 t
ORIGIN      
        1 agcatcacaa gaccaacggt caacgacatc tcattgatta tggtcaattc attaatattg
       61 agcatgattt tttcacgatt ttgtttggtg cctaaacaca tcaaaagcag gacaacagac
      121 cccagaataa gcccaagagt aaagggaccg taactggcca caatgactgc cacgtgaatc
      181 atgagccaat aactgtctaa aacgggttgt aaattggcta tttgcgggtc gagccaactc
      241 aagtgcgcta cccagagtaa catggaggtc acaaaggcgg tcgaggcgat agtcaagtca
      301 ctcttacgac caaatgctaa accaaagaat agggtcgccc aggagacgta aataacgctc
      361 tcataagcat cactccaagg agcgtgccca ctgatatacc agcgcccggc taaggccaag
      421 gtcatgccaa taaacaaaag ccaaatgagc cctttaaaga ggtttaccgc ataattccaa
      481 aatgatcttg gactgaaaat ttggatcatg atcaccacca acatcagtac cccaaaaaga
      541 ccgaagtaac gatagagttt attgaagggg tcgatgcggt tatacgcgat ttctgcactg
      601 accttacttt gggccggata aacagcggca ccaaaagttt gctgataacg ttctatggcc
      661 tctaaagcct gattggcaat actttcgtct ccggtttgtc gatactcacg caggccctga
      721 aaataaatgg gcataatgtt gcgaataaat aacgaatctt cagattttaa tgccgtagcg
      781 cttaattctt gataagaaat ccatttgttc tccaccgatc ccggaatcgg gaaaatcttt
      841 aaaatcccgc caccaagtgc ctcattcaag acgtatgact tttcataaag cttgataaaa
      901 tctttttcga attggtttgg attcgtcttg gcagaagcat cagcgacata gctatcgatt
      961 ttgctattgc cgcgctggtc aaataaatca attaaggcga tttgtttggt ttctggctgt
     1021 acgcctaaaa tctttttaat gctgtcattg cgccagtcca gcttcaaaat gggtatacca
     1081 taccacatca ttggaaactc agtcatggat aaaaacacct gatcggggtt cagccctttg
     1141 tattgatctt taccacttat ttttctgagt aattcactag aaaaagtgtt gaccggcttc
     1201 attcgaccat tatcttgcaa gatcagcctt ccaaaggcct ctgcttgcgc tttgttcacg
     1261 gcgttggcca aaacgattga atccgctttt tgactgctca taggcagatt ctgggcaccc
     1321 attcccgtaa atagaaacac caagggcaaa aacattaatg cttttttctt gcgctttact
     1381 ttgtccaaca tcttttccaa gtctttgaaa cgggtatgtc gatcaaacaa tatggccatc
     1441 aatccgatgt acaaaagaaa ataacccaaa tacgtggtat aagttcccca ccagtcatga
     1501 ttgaccgata aaacggttcc ccgctcatct ggatcaaaac tggcctgaaa aaatcgatat
     1561 cccccatgat ctaaaatgtg attcataaaa atatcataat cgaaaaatcc tgtttcatca
     1621 ttaacggtca ccttactttt aaatgaagaa taggcctttt ctgtacccgg atatttttcg
     1681 gcaataaaat catttaaagt gatactaaag ggcaattcat aaaccttcga accgtagcta
     1741 aggccaatac tcaagccccc tacttccaat acttttggcg cgggactcaa gcctttgccc
     1801 cctaaaaggg cgatgcgctc tgttttatct cctgtagcga cttggacgat cacggcgtca
     1861 ttacccgtag attctgaatc attggctttg accaaatcca ttgtgccgcg caaggccggc
     1921 tctggaataa caaaagcagt accaccgatt tggtacaaag aacgcaattc aagcgtcgct
     1981 ttaacctggg cctctacact tcctttttgt tggtctgcca tacgcatata gtcccccgca
     2041 aatggggatt ctataaaata ctgcccctct gtgaattcaa tgttaatggc gcccggggta
     2101 ggctgattaa aactatacag taagttatga atattggcaa cacttcccgc cttgagataa
     2161 tgctcatgtc gggtcccgtc tccagattca accagcttga ggtacaagtc cccttgagga
     2221 tcttccacaa gaccttcttt ggcgttttct atgtaatcaa ccacactgaa atccacgacc
     2281 ttaccgttat aatcagtaga ccattgagta tcgggagtta atcgttctga aagccgtacg
     2341 agtttcgccg gaacattacg ccgcatcaat acgccattga cctggtaatc tccatcgatg
     2401 tagcttgaaa tataagtttg gtcggataaa aaggtgcgtt cggtagcgcc ctctcgaata
     2461 tgcattactc cttcaaaacc aatataacgc gtaataaatg cccccataat gatgaggata
     2521 aaggacaaat gcaaagtaag tgtcgcccat ttttcttttt tatacagtct aaatcgggcg
     2581 atattgccta aaaaattaat aacaaagaac accataatgg cctcaaacca ccaggcgtta
     2641 aaaattaatt cacgcgcata gggcgagggc ggttttggat atccttgatc cataaatgtg
     2701 cctacaccca tcgctaccgc gaacagcagg aataaaaaag ccgtcaatcg tgtcgaaaat
     2761 aaaaacgctg cgattttctt ctgcatgtcg aaatttttgg caaaaatacg caaactaagg
     2821 tgacttatcc tcctgtggaa tcatagataa atgttaagaa tgctcccgtg agcccccttt
     2881 attgattatt tttgcaccat gataaaaatc ggtcttttcg gattcggtaa tttaggtcag
     2941 cacttggcca cacatcttaa ttctgcagaa ggactggact tggtccaaat ttacagtcca
     3001 agtcaaaggc gtaggtcttt tcagnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnta cagtccaagt
     3181 caaaggcata cgtcttttca gggggtggac ctcattagcg acctcaatca attaaaagct
     3241 gcagaccttt atattgccgc cattagtgat gatgccatcg ctgatttgtc ccaaaaatta
     3301 ccaaaagaca tttgtttagt gcatacctcg gggacggttg ggatggatgt tttgtccagg
     3361 caatcaaagc ggggcgtatt ttatccccta cagagttttt cgaagaacca tgacgttcgt
     3421 tttgatcaaa taccgatttg tttggaatca aacgacacag aaaccatgac tctattggag
     3481 caggtcgcgc ataagctctc taaaaaagtg gttcatattg attccccgca acgtcttgaa
     3541 ttacactttg gggcggtttt agtgaataat ttcacgaacc acctctacgc tttgagtcaa
     3601 aaccatttga aaaacaaagg aattaacttt gatcttcttc atccactcat tgaggaaacg
     3661 acacgaaaag ccctgaccat tggggctgat tccgcccaaa caggtcccgc gaagcgcggt
     3721 gattttaaaa ccattcagcg gcatgtaaac ttaattacgg atcaacaact aaaagaaatt
     3781 tataacttac tctctgattc tatcagaaat cattctaaat caaaataaag tggacacgag
     3841 ctataaaacc cttctcaagg acatcaaagc gtttgttttt gatgtagacg gcgtattgac
     3901 tgacggaaca gtaatcgtcg acacccaggg acaactgctg cgcaacatga atatcaaaga
     3961 cggttttgcg ctaaaagccg ctgcagataa aaaatatccc atgtgtatta tttcaggcgg
     4021 aaccaatcct ggcgttcaaa aaagactgga aggcctcgga attagcgaag tccatctcgg
     4081 ggcgcaccac aaaaaagaat tgctcatgga ttttatcaat agacatgacc tgaccgcaaa
     4141 tcaggtgtgt tacatgggtg atgatctacc cgattttgaa gtgatgacca tggttggttt
     4201 ggcttgctgt ccgcaagacg ctgtacctga aattaaatct attgcccaat atatttccca
     4261 tcgttctggc ggaaaaggct gtgtgcgcga catcatcgag caagtcctca aaacccaagg
     4321 gaactggttt gacgggggct cggtcagtgg ccgcgaagga tagttcaccc ctttatgcag
     4381 cctaaattca taaaatcatt ctcggggatc attttggctt ttcgcccact gaatcttctg
     4441 ttgcttttcg gtgtgcacaa aataattcaa ggggtcatga ttaggcaggg cctaaggcga
     4501 gaactccaaa taaaccaagg agacttatta attacactgg atcaattaat gtgggccagt
     4561 attgccttag ccgctgcagg ctacttaatc aatgactact acgatcagcg cgctgattcg
     4621 atcaacaaac caaaaaaagc gccccatata ttaatttccc ataaaatcat tttttggtca
     4681 ttttggatcg gattgaatct ctgtgccatt tatctaggat tcaggattga cggcactgtt
     4741 gaggattcaa attatggcgc tttatttatt gtaattggtc tcatgctttt tggctataat
     4801 ctatctaaat ggagtaaatt tttaatcggg cccgttatga tttctggcct ggtcgcccta
     4861 aaccccnncg tcctagcgca ggatttagca ttgaccctat atgccaaagc cgtaacaagc
     4921 aactcatttg aagcggttta tgatttattc acccctattg ggtcatggat ttggcgtatt
     4981 gcttttttgg gctttttatc gaatttcata cgagagcttg tcaaggacat cgaggacatc
     5041 aatggggatc aaaacgcggg gcgacggacc ctcccgatag ttttgggtat tgagcgtacg
     5101 gcaaaaataa cggtagcgat tggccttatt ttggtgttga gcctaggggt gtttgtggct
     5161 atggctttga gcacgagtgt tcctttggga atacatttga ctttggcctt actattggcc
     5221 atctggatga cctacaaatc cgcaaaaatt gaaagaccaa gccaagccaa gtccttatct
     5281 ttgaccctaa aattattgct catattaggt ctacttagcc ttttttggct ataaactcat
     5341 taaaatgcat cacaaagaat ttgaacactt tgacgtcgtt ctggcctcgg gatcgccccg
     5401 tcgtcaagaa ctacttcggg ctatgggcat accccatcgg gttgaagtcc gaaccattga
     5461 agagaattat ccctctgaac taaaaggcca tgaaatcact gatttcttgg cccataaaaa
     5521 agcggaagcc tttgacgcgc ttcagtcgaa tcaaatcgtc atcaccagcg acaccatagt
     5581 ctggtttgaa ggacgtcccg ttgaaaaacc ccgcgatcgc aatcatgccc tggccatgct
     5641 tgaatcatta agtggaacaa tgcatgaagt gttcacctca gtctgtttta agacccgtaa
     5701 tgagaccaaa atcgttcacg actgcactaa agtctggata gagcaacaat ctagccaaga
     5761 acttgaatat tatgtagacc acttccaccc tatggataaa gcgggtagct acggaataca
     5821 agattttttc ggatatattg cggtgtcgcg aattgagggt tgttattaca atgtaatggg
     5881 gctgcccacg cgtttggttt accaaaattt ggtttcgctt gttaaaggtc cagcaaaaga
     5941 gtaattttaa gcttatttag cgcaatcatt tatgacttta agcaaactct attttgaatt
     6001 aattgccacg ggcgtattag ttctaatctt actcattacg cgagccttaa ttatgggcct
     6061 aattcgtcga ttttcgcata gtgaacaaat tatagaccgc cgagtacagt tgatcacaaa
     6121 gctgattaat tatgtgattc tcggatgtgc tttggtgggt gtttttatta tttggggggt
     6181 tgatgtgcgt aatctagggg taatcgtatc ctctattttt gccgtaatcg gcgtcgcatt
     6241 ttttgcccaa tggtccatct tgagtaatat caccagtggc gtgatcatgt ttttcacttt
     6301 tccctacaaa atcggtgacc gtattatgat acacgataaa gaatacgagt atatagggat
     6361 aatcgaagac atcaagacct ttcatatcgt gattgtcaat gatgccggac aacgaatcac
     6421 ctatcccaac agtcttgttt tgcaaaaagg ggtcagcatc ctcaatcaaa acaataacgc
     6481 cccatcggac ccctcatcaa atgttagcaa acaatcttaa gccgttcaag acaatttaaa
     6541 aaacactaaa aaagccaatg atcgatttaa gttttaagtt taaaaacatt tcaaaagcct
     6601 tatggctaaa aagcctttgg attggtctgg cactgatcta ttcgggattg cattcgagtt
     6661 atgcacaagc tccggtgcaa tggaactcca gcgaaattta tcacgcccta gataagttca
     6721 acacttttgg ctccgttctc tatgtcgggg cacatcctga tgacgaaaac acaaggctca
     6781 ttacttattt tgctaatcac gaacgggcac aaaccgctta tctttcctta acgcgcgggg
     6841 gcgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnaac cgcttatctt tccttaacac
     7021 gcgggggcgg tggacaaaat ctaattggcc cagaactcaa atcgatacta ggaatcatta
     7081 gaagtcacga actgcttcag gcgcgctcca tcgatggagg ggaacaattt tttacccgag
     7141 cccttgattt tggctattgt aaacatccta gtgaagccct ggacacctgg ggtcatgagg
     7201 aaatcctacg cgatgtagtg cagaatattc gtcgatttaa acccgatctt gtggtgaatc
     7261 gatttaatca ccgtactccg ggatcaactc atggacatca tactgcttct gccctattga
     7321 gtattgaagc ttttaataaa gccaatgacc ccaattatga tcctgaatca gcagcgcaat
     7381 atggaatttg gcagccaaag cgactttttt ttaatacctc atggtggttt tatggcagtc
     7441 aagaggcttt tgaggccgct gataaaacga atttattgga aatccccgta ggtcaatatt
     7501 atgccccttt aggtgcgtcg accggggaac tcgcggcgag gagtcgcagc atgcacaagt
     7561 ctcagggatt tgggagtctg agcagtcgcg aacaagaaac tgaa
//
LOCUS       DPUP01000123            5023 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_22403,
            whole genome shotgun sequence.
ACCESSION   DPUP01000123 DPUP01000000
VERSION     DPUP01000123.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5023)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5023)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5023
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            142..>491
                     /gene="ytxJ"
                     /locus_tag="DHV98_04310"
     CDS             142..>491
                     /gene="ytxJ"
                     /locus_tag="DHV98_04310"
                     /inference="COORDINATES: protein motif:HMM:TIGR04019"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HCK05583.1"
                     /translation="MGIFDRFKSNRESLKQEEATQDSIKVSVPWNPLMRSDQITDLIN
                     QSHDKPVLIFKHSTRCIISAMVLRGLEAKAQKLAELGHWYYLDLIANRDCSNKVAQDL
                     QIVHQSPQLIILRNG"
     assembly_gap    492..601
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(655..1893)
                     /locus_tag="DHV98_04315"
     CDS             complement(655..1893)
                     /locus_tag="DHV98_04315"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05584.1"
                     /translation="MDFKRMNDLKCYRNKLSRFSTRHTKVRPLIIIFLGSLLLIFGSC
                     SSIKRNEKQLAQGNYDAVVNSISEKLKNNPNHKDKKQLIPLLEKAYKLAVKEDMRQLK
                     SLQTEPNGVNSSNIYWIYKGLDQRQDIVRPLTQIMPINTIFKDYTVVLRKSKNTYARH
                     LFDQAQGLLGMNTQEQAREAHKLLVQIKKLTPEFNGLEKTLALAHDRGTQHYGVKIKY
                     EAGAVLPAPLLKELQWYRPGNLDEFWKAYHFGPWNGRIDQSVQLNINALSFGPDELVH
                     ETISREKSIEDGWEYATDRYGNTVLDSLGQPIKVPIIKILRATLMRSHQHKEAVMQAK
                     IWTQNHELGTKAGPFPLNELLVFDNYYARFEGEREALLPEDLEMINNRPLPFPTDAQM
                     TSDLGRQIKSTFTRWLKRLE"
     gene            complement(1893..3223)
                     /gene="fahA"
                     /locus_tag="DHV98_04320"
                     /pseudo
     CDS             complement(1893..3223)
                     /gene="fahA"
                     /locus_tag="DHV98_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295600.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetase"
     assembly_gap    2047..2092
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3329..>3494
                     /gene="glyA"
                     /locus_tag="DHV98_04325"
     CDS             3329..>3494
                     /gene="glyA"
                     /locus_tag="DHV98_04325"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006795340.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HCK05585.1"
                     /translation="MSYQDADIFDLIEQEHDRQKHGLELIASENFVSDQVMAATGSVL
                     TNKYAEGYPGK"
     assembly_gap    3495..3710
                     /estimated_length=216
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3711..4891
                     /gene="glyA"
                     /locus_tag="DHV98_04330"
                     /pseudo
     CDS             3711..4891
                     /gene="glyA"
                     /locus_tag="DHV98_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710130.1"
                     /note="catalyzes the reaction of glycine with
                     5,10-methylenetetrahydrofolate to form L-serine and
                     tetrahydrofolate; frameshifted; too many ambiguous
                     residues; incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
     assembly_gap    4265..4335
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1243 a          959 c         1051 g         1325 t
ORIGIN      
        1 ggaaaagccc ccggcgtgtg tttagggcat tggttaattt ggggcgtatt ctctttgtaa
       61 tttgtcgctt tatcgaaaac ccaaagccgt aagaaccgta atttaattga atgattaaat
      121 ttgcacttca aataacattc catgggtatt tttgatcgtt ttaaatcgaa tcgtgaatca
      181 ctgaagcaag aggaggcgac acaggattca atcaaagttt cagtgccttg gaatccatta
      241 atgcgttcag atcaaatcac cgatttaatc aatcaaagtc atgataaacc ggttctgatt
      301 tttaagcatt caacgcgctg cattattagt gcaatggtcc ttagagggtt agaggctaaa
      361 gcccaaaagt tggccgaact cggccattgg tattatctag atttaatcgc aaatcgcgat
      421 tgctccaata aagtggctca agaccttcaa atagtccatc agagccctca gctgattatt
      481 ttaaggaatg gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 naaggaatgg tgtcgtggtt tgggacgcgt cccatcaggc cattagcccg gaggctattc
      661 taaacgcttt agccaacgcg taaaggttga tttaatttga cggccaagat cactcgtcat
      721 ttgggcatca gtgggaaagg gtagaggcct gttgttgatc atctcaaggt cctcgggcaa
      781 aagcgcctct ctttcgcctt caaatcgggc atagtaatta tcaaagacca agagttcatt
      841 taagggaaaa ggaccggctt tagtccccaa ttcatgattt tgagtccaaa ttttggcctg
      901 catcaccgct tccttatgct gatgactgcg catgagtgtg gcgcgcagaa tttttatgat
      961 aggcactttt atgggctgcc ccagcgagtc gagtacggta ttgccatagc gatccgtagc
     1021 atattcccat ccatcttcga tagatttttc tcgtgaaatg gtctcgtgga cgagctcatc
     1081 aggtccaaag gaaagggcat taatattgag ttgtacactt tgatcaatac ggccattcca
     1141 tggtccaaaa tggtacgctt tccaaaattc atctaaattc cctgggcgat accattgcag
     1201 ttctttaagc agcggagcag gcaatacagc ccctgcttcg tactttattt tgaccccgta
     1261 gtgttgggtt ccccgatcat gggcgagcgc caaagttttt tccaaaccat tgaattctgg
     1321 cgttagcttt ttaatttgta cgagtaattt atgagcctcg cgcgcttgct cttgggtatt
     1381 catgcccaat aacccttggg cttgatcaaa taaatgccga gcataagtgt tttttgattt
     1441 gcgcaaaacg accgtgtagt ctttaaatat tgtatttatg ggcatgatct gggtaagggg
     1501 ccggacaata tcttgtcttt ggtccagacc cttatagatc caatagatat tactcgaatt
     1561 aacgccattg ggctctgttt gaaggctctt gagttgacgc atatcttcct taacggcaag
     1621 tttataagcc ttttccaaga ggggaatgag ctgttttttg tccttgtggt tgggattatt
     1681 ttttaatttt tcggagatcg aattgactac agcgtcataa tttccttgag ccaattgttt
     1741 ttcattgcgc ttgatgctgc tgcaagagcc aaagatcagc agcaaactgc ccagaaaaat
     1801 aattatcagt gggcgcactt tagtatgcct tgtggaaaag cgagaaagtt tatttcggta
     1861 gcactttaaa tcgttcatcc ttttaaaatc cattaaaatt ctagtcggcg ggctggtaaa
     1921 attttaccgg tacattcgcc aaagccaatt cgtatctgtt cgttttgact atagccacgc
     1981 ataattacgg tgtccccatc ttctataaag gttcgggtgc tgccatcgct caggggaact
     2041 ggttttnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngtttttgg
     2101 cctcgccagc tcagttcgag catggatcca tagctatctg gtgtggggcc agaaatcgtt
     2161 ccgctaccca tcatgtctcc actgcgcaaa ttacagccat taaccgtatg atgcgccaat
     2221 tgttgtgcca tagaccaata catatactta aaattggaac gacacactaa agactcattg
     2281 ccgttttcag gcataatatt ggcctcaagg gtaatatcat aattatgcga cccggtttgt
     2341 tgtaaatagg ggagtggggc gggatcctgc tgcggtccgg ccacacggaa aggctccaaa
     2401 gcatccaagg tgacaatcca aggcgaaata gtcgaggcaa aattctttcc taaaaatggg
     2461 ccaagaggaa cgtattccca cgcttgaatg tctcgtgcgc tccaatcatt aaataagacc
     2521 aatccaaata tgtgttcaga ggcttcgttt atagaaatgg ttttgcctag gtcattagcg
     2581 gccgttgtga taaaagccat ttcaagttcg aagtctaaaa gtttagaggg gccaaatcct
     2641 ggaagtcccc catctttagg ggccgattgt ccgttgggcc tgtaaatggg cgtaccactt
     2701 gggacaatgc tggnncgtga taaccgatag gaatatgcag ccagtttggc aataaggcgt
     2761 tttctgggtc tctgaacagg ctacccacat tagtggcgtg ttctttactg gcgtaaaaat
     2821 ctgtataatc acccacgtca acgggcaatt gcatttcaat ttcatccaaa ccaaaaagga
     2881 ttttctctct gtgatcgggg ttatctctta attttgggtt gtcttgatta aaaatatcgg
     2941 aaattcgatt gcgcaccaaa cgccaggttt tacgcccatc ggcaataaag tcattcagac
     3001 tgtcttgaag aaatatgtcg tccgtaagtt ctatgccttc aaaataaccg agttgatgca
     3061 acgcccctaa atcgatagcg gtatccccga tccgtgtccc gatagtaatg atgtcatctc
     3121 tggtcagaaa tacaccaaaa gggatgtttt gaattggaaa gtcactatgg gctggaacat
     3181 tcagccaaga tttgatattg gggttattgg cacttaaggg catgaatctg gattttaatt
     3241 gttggtaaaa tgttaatcaa atatataatt tattgactac taacaaaggg catttagtat
     3301 ttttggtgca aatcaaatcg ccaaacaaat gagttaccaa gacgctgata tttttgatct
     3361 aattgagcag gaacacgacc gccaaaaaca cggtttagaa ctgatcgcct cagaaaactt
     3421 tgtaagtgat caggttatgg cggctacagg aagtgtttta accaataagt atgccgaagg
     3481 ctacccggga aaacnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn tacggcgggt
     3721 gtcgtgtggt ggatcaagtg gagcaattgg ctatcgatcg cgctaaagtt ttgtttggcg
     3781 ccgaatatgc taatgtacaa ccccacagtg gctctcaagc caatacggcg gtttttcatg
     3841 cctgcatgaa gcccggagac acatttttag ggtttgattt agcccatggg ggacatttaa
     3901 cccatggtag cccagttaat ttttctggcc gcttgtatcg accagtattt tatggtgttg
     3961 ataaagagac cggcctctta aattaccaaa cgattcgccg tttggcccta gagcacaaac
     4021 ctaaaatgat tattgcagga gcctcagcgt actcgcgtga aattgactat gctgaattcc
     4081 gctctattgc cgatgaagtt ggggctattt tattggccga tattgcccac cctgcaggac
     4141 tcattgccaa ggggattatt tcggatccta ttcctcactg tcatgtggtg acgaccacaa
     4201 cacacaaaac attgcgtggc cctagagggg gcatgatttt aatgggtaaa gactttgaca
     4261 atccnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnntcctt ttgggatcac cctgaaaaac ggctcattac gaaaaatgtc
     4381 ctcccttttg gatgccggta ttttcccggg taatcaaggc ggtccattgg agcatgtcat
     4441 cgcagcgaag gcagtggctt ttggtgaggc gcttgaagat tctttcttac attatatggt
     4501 tcaagtaaag aaaaatgcca aggtaatggc agaagccttt attcaaagag gttataacat
     4561 tatttcagga ggcaccgata atcacatgat gctcattgat ttgcgcaaca agggcattac
     4621 cggaaagcaa gctgaagagg cgctagggca agcagaaatt acgttaaata agaatatggt
     4681 gccttttgac gatcaatcgc cttttgtaac cagtggtatt cgcattggta ccgccgccat
     4741 aacgactcgt ggtttggtag aatcagatat ggaacagatt gtagatttga tcgatcgcgt
     4801 tatccaagcc ccagaggatg aagaaaatat caaatcagta gaggctgatg tatataagtt
     4861 aatggcccat cgtccgttat ttgtggccta agcaatgatg gaaacagcgc ggtgtaatat
     4921 tcgtcccgtg aataccctag acgcctgttt tattctcgag ttacttaaca gtgaactttg
     4981 gtcaagttca tccgcgatat attaaaccta cccaaggttt acg
//
LOCUS       DPUP01000124            3211 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14052,
            whole genome shotgun sequence.
ACCESSION   DPUP01000124 DPUP01000000
VERSION     DPUP01000124.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3211)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3211)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(166..708)
                     /locus_tag="DHV98_04335"
     CDS             complement(166..708)
                     /locus_tag="DHV98_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HCK05586.1"
                     /translation="MSTEELITRCQDNDRQAQELLYRQYSSVLYGMCLKYAPNQMEAE
                     DNLQDAFITIFQRIGQYQGKGSFEGWMKRIAINTVLQKYRQKRLYDLPADDLIEEKLD
                     EDLDDGSATLPLPFLLSIIQELPERYRLVFNLYVLDGHTHKEIAELLGISDGTSKSNL
                     ARARQLLQQKINAFNKANDR"
     gene            complement(816..>1181)
                     /locus_tag="DHV98_04340"
     CDS             complement(816..>1181)
                     /locus_tag="DHV98_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination/repair protein RecA"
                     /protein_id="HCK05587.1"
                     /translation="NALKFYASIRLDIRRSTQLKDNNSEAVGNKTRVKVVKNKVAPPF
                     KTAEFDIMYGEGISKIGEIIDLGVDYEIIKKSGSWFSYDDTKLGQGRDAVKSLLTDNP
                     ELMEELEGKITQAIKTLAS"
     assembly_gap    1182..1290
                     /estimated_length=109
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1291..>1670)
                     /locus_tag="DHV98_04345"
     CDS             complement(<1291..>1670)
                     /locus_tag="DHV98_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination/repair protein RecA"
                     /protein_id="HCK05588.1"
                     /translation="FIDAEHAFDRYYAEKLGVDIENLIISQPDNGEQALEITDNLIRS
                     GAIDIIIIDSVAALTPKSEIEGEMGDSKMGLHARLMSQALRKLTGSISKTKCTVIFIN
                     QLREKIGVMFGNPETTTGGNALKF"
     assembly_gap    1671..1832
                     /estimated_length=162
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1833..2134)
                     /locus_tag="DHV98_04350"
     CDS             complement(<1833..2134)
                     /locus_tag="DHV98_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010251194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination/repair protein RecA"
                     /protein_id="HCK05589.1"
                     /translation="MSSEKEAKLKALKLTLDKLDKTYGKGAVMKMGDSAVEEMDVIPT
                     GSLGLDLALGVGGYPKGRVIEIYGPESSGKTTLTLHAMAEAQKKGGIAAFIDAEHA"
     assembly_gap    2161..2370
                     /estimated_length=210
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2429..3211)
                     /locus_tag="DHV98_04355"
                     /pseudo
     CDS             complement(2429..3211)
                     /locus_tag="DHV98_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781853.1"
                     /note="frameshifted; incomplete; missing start; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
BASE COUNT          692 a          629 c          542 g          865 t
ORIGIN      
        1 gacaattgct ccagttttcc aaaaaagagg aatgattaat ggacgttttt tattgtcctt
       61 attcaattta cgctctattt cgggccacaa atctcgttct ggcaactttt gaaactcacc
      121 gagactgctt tttatttgtt tttcccaatt ttgtttcatc gcgaattaac ggtcattcgc
      181 cttgttaaag gcatttattt tttgttgcaa gagttgtcgc gctctggcta aattcgattt
      241 tgatgttccg tcgctgatcc ctaaaagttc agctatttcc ttatgtgtgt gcccatccaa
      301 cacatacaaa ttaaaaacca agcgataacg ctctggcagt tcttgaatga tactcaataa
      361 gaagggcaag ggcaaggttg cagaaccatc atcgaggtcc tcgtccaatt tttcctcaat
      421 caaatcatca gcaggcaaat cgtacaggcg tttttgtctg tacttctgca atactgtatt
      481 gatggcaatc cttttcatcc atccttcgaa agaccctttg ccttgatatt gaccgatgcg
      541 ctgaaaaatc gtaatgaacg catcctggag attatcctcg gcttccattt gatttggcgc
      601 atactttaag cacattccat agaggaccga actgtattgc cggtacaata attcctgtgc
      661 ctgtcgatca ttatcttgac accttgttat gagctcttct gtagacaaat acgaattggt
      721 tttatatcca taggcggtac ttatggcaca tttcgcatct gactctacga cagtaagatg
      781 ctattctttt aaaggggttg cgtggctcaa aaaaattaag aggccagagt ttttattgct
      841 tgggtgattt taccttccaa ttcctccatc aattctggat tgtcggtcag caagctctta
      901 acagcatctc ttccttgccc tagttttgta tcatcataac tgaaccaaga accactcttc
      961 ttgatgattt cgtaatcgac tccaagatca atgatttccc caatttttga aataccttcc
     1021 ccatacataa tatcgaactc agccgtttta aaaggcggcg ccactttgtt cttaacgact
     1081 ttgacgcgcg ttttattacc aacggcttcg ctgttgttgt ctttaagctg tgttgaccga
     1141 cgtatatcta agcgaatcga ggcataaaat ttaagtgcat tnnnnnnnnn nnnnnnnnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn taaaatttaa gtgcattacc tcctgtagtc
     1321 gtttcagggt tgccaaacat taccccgatt ttttcgcgca attggttgat aaaaatgacc
     1381 gtacatttgg ttttactgat tgagcccgta agttttctca aagcttgtga catgagacgg
     1441 gcatgcagcc ccattttgct gtcgcccatt tctccttcaa tctcactttt tggggtaagc
     1501 gccgcgacgg aatcgataat gatgatatca atagcgccac tgcgaataag attatcggta
     1561 atttcgaggg cttgctcgcc attgtcaggc tgagaaataa ttagattttc aatatcgacc
     1621 cccagttttt ccgcgtaata tcgatcaaag gcatgctcag catcaatgaa nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaaggcatg ctcagcatca atgaatgcgg
     1861 caatcccccc ttttttttga gcttcagcca ttgcatgaag ggttaatgtg gttttaccag
     1921 aggattcagg accgtaaatt tcaattactc tgcctttggg atatccgcct acccctaaag
     1981 ctaaatcaag ccccaatgag ccggtaggaa ttacatccat ttcttctact gccgagtcgc
     2041 ccattttcat gacagcgcct ttaccgtagg tcttatctaa tttatctaaa gtgagtttta
     2101 atgcttttaa tttcgcttct ttttcgctgc tcatgatctg attgttaacg gttacacatt
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn tagcgctaag gtaagattaa tcctgaatga
     2401 ggacaatatt tggaccccta gaaccccctt attttgttaa caacgtgtca gatttataaa
     2461 ttccaacttt caatgctccg ttggagtcga tttgggcgcg atacatgccc ggggtgttaa
     2521 atcgcatgga gatattgccg tgcttatcca tggcaattac accgccatcg ccgccgagtt
     2581 caggtatttt tttatcgatt actgtgctgg tggactgttc caaatcaaaa ccaccgtact
     2641 gcatcatggc cgatatgtca tgggcgacga ctcctctaat gaaatactcc ccccatccag
     2701 tggccgaaac cgcgcagctt tgattattgg catacgtgcc agccccaata actggagcgt
     2761 ccccaattcg gccnnaattg tttgttggtc attccccccg ttgaggttcc tgcggcaaga
     2821 tttccatttt gatcaagagc gacacagccg acggttccat attttgaagc tttaagtatc
     2881 gggtcaaaaa acatttcagc ctgattattc ataggtgatt ttttgtctaa gagcaaagaa
     2941 tgttgttcct ctgcggcctt aacgcgcatg agatgatcgt agcgactctg tgtgtaaaag
     3001 taatcttgtt ctaccagggc aaaaccttga tctttagcga atgcctcggc cccttgtcca
     3061 tacataaata cgtgtgggct attatccata accgatcggg ccagatcaat ggggtttttg
     3121 atgtgcatta cccctgctac agcaccggca tttagagtgg cgccatccat gattgaagca
     3181 tcaagctcat tggtttggtc atgtgtaaaa a
//
LOCUS       DPUP01000125            5178 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9304,
            whole genome shotgun sequence.
ACCESSION   DPUP01000125 DPUP01000000
VERSION     DPUP01000125.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5178)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5178)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5178
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..182)
                     /locus_tag="DHV98_04360"
     CDS             complement(<1..182)
                     /locus_tag="DHV98_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCK05590.1"
                     /translation="MSRKIKWGVLGGGGDSLIGVLHRVAASMYDAYALTGAVFNPDFG
                     QNKAFAEEIGIPLDRI"
     gene            complement(215..1447)
                     /locus_tag="DHV98_04365"
     CDS             complement(215..1447)
                     /locus_tag="DHV98_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008990215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK05591.1"
                     /translation="MKNTTRFQLSFMMFLEFFIWGGWFVTMGTFLGNNLGATGAETAM
                     AYSTQSWGAIIAPFIIGLIADRFFNAERILGVLHLIGAFLMYQMYQSTDFGSFYPYVL
                     GYMIGYMPTLALVNSVSFNQMKDPAKDFSLIRVWGTIGWIAAGLAISYLFHWDPKPEV
                     PGDKGLLQNTFLMVAIASAILGLFSFTLPKTPPKADDGSKITVRDILGLEALKLLKDR
                     NFLVFFLSSVLICVPLAFYYQHANQFLSEIGVENATGKMTIGQISEVLFMLLLPFFFK
                     KFGFKMTILVGMLAWTVRYLLFAFGDAGEGVYMLLIGIALHGICYDFFFVSGQIYTDS
                     KAGEKVKSAAQGLITLATYGVGMLGGFYIAGLITDANLTSEGHDWASVWQIPALFAVL
                     VFVLFAVLFKNETIEYKE"
     gene            complement(1515..2486)
                     /locus_tag="DHV98_04370"
     CDS             complement(1515..2486)
                     /locus_tag="DHV98_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCK05592.1"
                     /translation="MILKKILAIGALLALMSCQNTMNKTEEAAQEATQESSAQNFEIS
                     LAQWSIHKQIWDGSIDPMDFASVAKDLGYTGLEYVNHLYVGDMVNYPMKEQGLDAVLA
                     ELKRRSDSLGMTNVLIMVDDEGDLALDDETETAQAVENHKKWVDAAAFLGCHAIRVNL
                     FGASDPQAWVANSVRSLKALSSYAAEKNISILVENHGGLSSDAKLLSKVMERVGMDNC
                     GTLVDFGNFCLRRENDERWGAPCVEEYDRYQGIEELMAYAHGVSAKSYAFDAEGNETT
                     MDFPRILNIVRDAGFSGFIGVEFDGPDADPFPGMEATKALIETVLIN"
     gene            2731..4428
                     /locus_tag="DHV98_04375"
     CDS             2731..4428
                     /locus_tag="DHV98_04375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006990370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HCK05593.1"
                     /translation="MAIPNEQFDAIVVGSGISGGWAAKELCENGLKTLVLERGRMVKH
                     IEDYPTANKDPWDFEFKNRRTVAQQERQVKQNRTGYTTRDESAHWFVDDIIHPYNEVK
                     RFDWIRGYHVGGRSIMWGRQSYRLSDIDFEANKREGIAVDWPVRYADIAPWYDKVEEF
                     IGVSGEALGKEVLPDGVFSPPMELNCAERDLREKIDNNYDDGRVLTIGRTAHLTGDKA
                     HDGRSNCVYRNRCIRGCPFGGYFSSVSSTLPAAERTGNMTLRPNSIVHEVIYDPQTQR
                     ATGVKVIDTETGENLVFNAKVIFLCASAIATAGILLKSKSERFPNGMGNDSGELGRNI
                     MDHHFKAGAFAEVDGFEDQYFKGRRPNGIYIPRFRNIGGVTDQPNFLRGYGYQGGASR
                     GNYGDQIAEIGYGKDLKDLVSRPGKWSMTLMGFGECLPYHDNKMELDFDKRDKWGLPT
                     YTFDVEWKENEWEMRKDMVQQAMEMLEMAGYKNIRPWDDPGAPGLGIHEMGTARMGRD
                     PKTSVLNENNQIHTVPNVYCTDGSFMTSASCVNPSLTYMAFTARAANHAVNQLKKES"
     gene            4428..5120
                     /locus_tag="DHV98_04380"
     CDS             4428..5120
                     /locus_tag="DHV98_04380"
                     /inference="COORDINATES: protein motif:HMM:PF13618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05594.1"
                     /translation="MNRRQALKNLGLGGGALVATPAIISLLQSCGSGSGYTPAFLSSA
                     EAKALKEMVGLIIPSDLEVPGAVDLGVHQFIDLYWDQILPTDDQIPALEDEFTKYSAS
                     SRQSEIRKGFAALARVLERDHQTDFDSAGTETYDALLGHYLKADKAQADQWSKELWAY
                     RDALETDPQASASDDVMAAALVREVRSMTTWTWTKTQEIGENFLWYDPVPGVYQGCLP
                     TSEAGNGKVMSL"
BASE COUNT         1500 a         1140 c         1204 g         1334 t
ORIGIN      
        1 taaatgcggt ccaatggaat accgatttct tcggcaaaag ccttgttttg gccaaaatcg
       61 ggattaaaaa ccgctccagt cagggcatag gcatcataca tggaagcggc cacgcgatgc
      121 agtacaccga ttaacgaatc accgcctcct cctaagacgc cccatttaat ttttcgactc
      181 ataataattt cttttttagc aatgtttaag gggattactc cttgtattct atcgtttcat
      241 ttttaaagag cacggcaaaa agcacaaaaa ccaatacggc gaacaaggct gggatttgcc
      301 atacagaagc ccaatcgtga ccttctgaag taaggttagc atcggtgatc agtccagcga
      361 tatagaatcc gccgagcatc ccaacaccat aagtagccaa agtaattaat ccttgtgcag
      421 cacttttgac tttttctccc gctttactgt cggtataaat ctgtcctgaa acaaaaaaga
      481 aatcataaca gataccgtgc aaagcaatcc cgatgagcag catataaacg ccctctcccg
      541 catcgccaaa ggcaaacaat aaatagcgca cggtccaggc cagcatcccc accagtatgg
      601 tcattttaaa accgaatttt ttaaagaaaa agggcaagag cagcataaac aaaacttccg
      661 agatttgccc aatagtcatt ttacctgtag cgttttccac gccgatttca gagagaaatt
      721 ggtttgcgtg ttggtaataa aaagccaaag gcacacaaat caataccgac gacaaaaaga
      781 agactaaaaa gtttcggtct ttgagtagtt tcaaggcttc gagacccaaa atatcacgaa
      841 ccgtgatttt ggagccgtca tctgcttttg ggggtgtttt aggcagggta aaactaaaga
      901 ggcctaaaat tgccgaggca atggcaacca tcaaaaatgt gttttgaagc agccctttat
      961 ctccgggaac ttctggcttt ggatcccagt gaaagagata actgatagcc agtccagcag
     1021 caatccaacc gatggtgccc caaacacgga tcagggaaaa gtctttggct gggtctttca
     1081 tttgattaaa agacacagaa ttgactaacg ccaaggttgg catataaccg atcatatagc
     1141 ccaagacata agggtaaaaa ctaccaaaat ccgtggattg atacatttga tacatcaaaa
     1201 aggccccgat taaatggagt accccaagga tgcgttctgc attaaaaaaa cggtcagcga
     1261 tcagtccaat aatgaacggg gcgattatgg ccccccatga ttgggttgag taggccattg
     1321 cagtttctgc acccgttgct ccgaggttgt tgcccaaaaa agtccccata gtgacaaacc
     1381 atccgcccca aataaaaaat tctaggaaca tcataaagga aagctgaaat cttgttgtgt
     1441 tcttcatggt cgtgttgtgt tagtgttgct cctatttggg gtttaagatt cccctttaag
     1501 aggagattaa tcaattagtt aatcagtacg gtttcaataa gcgccttggt ggcttccatg
     1561 cccgggaatg gatctgcatc tggcccatcg aactctacac caataaagcc cgaaaatcca
     1621 gcatctctca cgatgttcag gattcttgga aaatccatag tggtttcatt gccctcagcg
     1681 tcaaaagcat aagatttagc cgacacacca tgggcgtaag ccataagttc ttcgattcct
     1741 tgatagcggt catactcctc gacacaaggg gcgccccatc gctcgtcgtt ttcgcggcgt
     1801 aaacagaaat taccaaagtc cactagcgta ccacaattat ccatcccaac gcgctccatg
     1861 accttgctga gcagtttggc atcgctggaa agaccgccgt gattttccac caaaatggaa
     1921 atattttttt ctgctgcgta gctactcaaa gctttaagtg agcggaccga gtttgcgacc
     1981 caagcctggg gatcagaagc gccaaaaagg ttcacccgaa tggcgtgaca gcctaagaaa
     2041 gctgcggcat caacccattt tttatgattt tcaacggcct gtgccgtctc tgtttcatcg
     2101 tctaaggcca agtcgccctc gtcatcaacc atgatcagga cattggtcat gcccagtgaa
     2161 tcgctgcggc gctttaattc tgccagtacc gcatcaaggc cttgttcttt catgggataa
     2221 ttgaccatat cgcccacgta cagatggttc acgtattcca gtccggtata ccccaaatct
     2281 ttagccactg aggcgaaatc cataggatcg atactgccgt cccaaatttg tttatggata
     2341 gaccactggg ccaaagaaat ttcaaagttt tgtgctgagg attcttgtgt tgcctcttgc
     2401 gcggcttctt cagttttgtt catggtattt tgacagctca ttaaggccag taacgcccct
     2461 atggccaaaa ttttttttag aatcatgttc gtatgtttta ttggtcgttc gcttaaatag
     2521 tcttctaaga taaacgattt tttactgagt tggatttaaa catgagttgt tgttattttt
     2581 ttcgaatcga aatcgttttc gttattaaaa ccagcatcat tctggggata tagcttggtt
     2641 agtcggcaaa aaaagaggaa attagaactc ttgcttttga aagactacag ttcaagagta
     2701 atacagacca acaaattaaa caatcaaaat atggcaatac cgaacgaaca attcgacgca
     2761 atcgtcgtgg gttcaggaat tagcggcgga tgggccgcta aggagctttg cgagaatggc
     2821 ctcaagactc tggttttaga gcgtgggcgc atggtaaagc acatcgaaga ctatcctaca
     2881 gcaaataaag atccctggga ttttgaattt aaaaatcgac gaaccgtcgc acagcaagag
     2941 cgtcaggtga agcaaaacag aaccggttat accacgcgtg atgaatccgc ccactggttt
     3001 gttgatgaca tcattcatcc ctataacgaa gtaaagcgct ttgactggat tagaggatat
     3061 catgttgggg gtcgttccat aatgtggggc cgtcaatcct accgtttgag tgatatcgat
     3121 tttgaagcca acaaaagaga agggatcgcc gtagattggc ctgtacgcta tgcggatatc
     3181 gccccatggt atgacaaagt tgaggagttt atcggagtga gcggtgaggc tttaggcaag
     3241 gaagtgctgc ccgatggcgt attttctcca ccaatggagt taaattgtgc tgagcgcgat
     3301 ttacgtgaaa aaattgacaa taattacgac gatggccgcg tgctgaccat aggaagaacc
     3361 gcgcatctaa ccggagataa agcccatgat ggccgttcga attgcgtcta tcgcaatcga
     3421 tgtattcgtg gatgtccttt tggtggttac ttcagtagtg tgtcgtctac ccttccggca
     3481 gcggaacgca ccgggaacat gacgctaagg ccaaattcaa ttgttcatga agtaatttat
     3541 gatccgcaaa cccagcgcgc tacaggggtt aaagttatcg atactgaaac aggagaaaac
     3601 ctcgtgttta acgcaaaggt tattttcttg tgtgcttcag ccattgctac agcagggatt
     3661 ttgttaaaat ccaagagtga acgcttcccg aacggaatgg ggaacgattc aggggaatta
     3721 ggacgcaaca tcatggatca tcacttcaaa gcgggagcgt ttgctgaagt tgatggtttt
     3781 gaagaccaat actttaaagg gcgtcgtccc aacggaattt atattccccg atttagaaat
     3841 attggtgggg tcaccgatca gccaaatttc ttgcgcggct atggttatca gggcggcgcg
     3901 tctcgaggaa attatggaga ccagattgcc gaaataggtt atggaaagga ccttaaagat
     3961 ctcgtcagcc gaccaggaaa atggagcatg acccttatgg gctttgggga gtgtttgcct
     4021 taccatgaca ataaaatgga actcgatttt gacaaaagag ataagtgggg cttaccgacc
     4081 tatacttttg acgtagagtg gaaagaaaat gagtgggaaa tgcgcaagga tatggtgcaa
     4141 caggctatgg aaatgcttga aatggctgga tataaaaata tccgtccatg ggacgatcca
     4201 ggagccccag gacttggcat tcacgaaatg ggaaccgccc gtatgggaag agatcctaaa
     4261 acttcggtgc tcaatgagaa caaccaaatc cataccgtgc ctaatgtgta ctgtaccgac
     4321 gggtcgttca tgaccagcgc gagttgtgtt aatccatcac tcacgtatat ggcttttaca
     4381 gcaagagccg caaatcacgc cgtaaatcaa cttaaaaagg aatcctgatg aatagaagac
     4441 aagcgttaaa gaacttagga ttgggtgggg gtgccttagt agcaacacct gccattatta
     4501 gcctgctcca aagctgtggt tctggatcag gatatacccc tgcattttta tcgtccgcag
     4561 aggccaaagc tttgaaagaa atggtcggat tgatcatccc ttcagatctc gaggtgcccg
     4621 gtgctgtaga cttaggcgtg catcaattta ttgacctata ttgggaccag atattgccca
     4681 cagatgatca aattcctgcc ttggaagatg aatttaccaa gtattctgcc tcttcaagac
     4741 aaagcgaaat ccgcaaagga tttgcggctt tagcacgcgt actggagcgg gatcatcaaa
     4801 cagattttga cagtgctggc acggaaacct atgacgcctt attagggcac tatctcaaag
     4861 cggataaagc acaggcagat cagtggtcta aggaattatg ggcgtatcgt gacgcgcttg
     4921 aaacggatcc tcaagcctcg gcttcggacg acgtaatggc agcagcactt gtacgcgagg
     4981 tacggagtat gactacttgg acgtggacta agactcaaga aataggagaa aatttcttgt
     5041 ggtatgatcc cgtacctggt gtttaccaag gatgcttacc gacttccgag gccggtaatg
     5101 gcaaggtcat gtctctataa aactaaatcc acaaaaaaac cctccaattg gaggtttttt
     5161 ttgtggattt agttttat
//
LOCUS       DPUP01000126           15182 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6476,
            whole genome shotgun sequence.
ACCESSION   DPUP01000126 DPUP01000000
VERSION     DPUP01000126.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15182)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15182)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15182
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            107..>1033
                     /locus_tag="DHV98_04385"
     CDS             107..>1033
                     /locus_tag="DHV98_04385"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05595.1"
                     /translation="MNFKNYLLVFCAALISVTLSAQEETQNQSQGVANFGESLPKYYV
                     PSMASRSELIPAEYTEEEARDRRSIRNRVVIGKEKQTTDDYYVLNRHETEQSVRVMPP
                     SIVFDAYSSGSQPTDPSMAVGIDHVFVVYNTGYRIFDKSGNPLTGQLAVTNIFSAGGC
                     CDLTASFDTAAGRWVISYLFGNGNVQVAVSDGSDPLTSGWNVYTYTGVSDYQKLSVWS
                     DGYYITANTNPRRVWALERDEMLAGSTTASFQTFNLTGIQTSGFYSPQALNVSDGTMP
                     AAGGATIVYLQDDAWSGVSQDHIKFWTIDVDWA"
     assembly_gap    1034..1154
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1155..2686
                     /locus_tag="DHV98_04390"
                     /pseudo
     CDS             1155..2686
                     /locus_tag="DHV98_04390"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; incomplete; missing
                     start; Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    2446..2484
                     /estimated_length=39
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2738..6181)
                     /locus_tag="DHV98_04395"
     CDS             complement(2738..6181)
                     /locus_tag="DHV98_04395"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05596.1"
                     /translation="MALTAKLLRSTYLLIALWMWSVPVVMAQDQASWTGRSKTVKVAD
                     TITFDSISINPNQFRVLRLDLTPIDRSLYTGLFSKAQLILDSAVGQDNDSIIIHYLRY
                     PNYLTKTYSALNPELILPAQDQMGKIYRLSENNFTKEKNPFSGINAQGSIVRGLTVGN
                     NQNAVVNSQLDLQITGALSDKVQITASLQDSNLPGENGGYTQSLEEFDQLFVALEADR
                     WQLRAGDVDLINRKTIFGQFTKKIQGMHAAWQIDHKDGSETSMFAAAGLVRGVFKRSL
                     IQGQEGNQGPYKLLGANGEALILMISGSERIYVNGVLLQRGENADYVIDYNAGELRFN
                     PTYPINSNMRITAEYQITERNYTRFIANTGGEYQSEHLNIGAYLYTEQDDKNQPLQQN
                     FTQAQQEVLKTAGDNPQALLAPSEQAATYSENQILYKKEIIQGQQVFVFSNNPQDELY
                     QVRFTLMGPNQGDYVVQSQTSINKIFAYVPPIDGVPQGSYSPVIKLTPAQKLQLAGAF
                     VRYKKDKTQIEGEFSASDNDLNRYSSQDDQDNTGYAGLINARQVLTQQDSLWTLNGFI
                     RLNAVDKNYRSPELLYQVEFNRDWNLPINQIIRDQTLSTLGVQWLNQRHGETTYQFDQ
                     LITSGDYIGQKHSILSNLRGKKWWYQGQFSNLNTSAINGESNFLRAHQSIGISSDNRW
                     VRAKFLTENNRVKDSLDQLNGLSQKFIAYETAMGIGDSTAVFTELGWRYRDTDSLVSG
                     TLNRVGIARDVFAKAQLINNHKTKLSGFAQYRNLSTSNTIFEGQKSLNLRLSFAQNLW
                     ENRLRISTNIEANNGKLPQQEFTYVAVEPGQGTYTWIDYNEDGIQDLDEFEMAQYQDQ
                     AAYVRLLLPNQTFIDIQRGALTQLMTWQFSSWQNSPGLKGFLAHFYSQTSFAIDRSTP
                     KDNLIFINPFGGDNTEDLALQMNLKQALFFNRNRQYYTTAYIYQRNENNQLIALGLQQ
                     TTLEQHQLTFDHKIKSQLLAHLTAEYNRRENRSENFAQRNFSLLHRGIKPKISYFWGE
                     NSRVNIYWSAAQKENTTGAREFLNQNNFGVSCTLAKADKMSLTAEINSINNQFEGSAY
                     SSLAYLMLEGLQPGENYTWNVLWQKRINSFLDLNFSYFGRQSPDSPTIHTGSMQLRAF
                     F"
     gene            6334..7098
                     /gene="xth"
                     /locus_tag="DHV98_04400"
     CDS             6334..7098
                     /gene="xth"
                     /locus_tag="DHV98_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HCK05597.1"
                     /translation="MKIISYNVNGIRAAMTKGLIEWLQQANPDVFCIQETKAMKDQVD
                     LALIEQAGYPYHYWFSAQKKGYSGVAIFCKTEPDHVAYGTGIDYMDAEGRNLRVDFPG
                     VSIMSLYLPSGTNDDRLDFKFRYMDDFLAYVTTLRKEYPKLVICGDYNICHHPIDIHD
                     PIRNAKVSGFLPRERAWLEDFVQSGFVDSFRHLNKEPGQYTWWSYRANARANNKGWRI
                     DYNMVTEPLRDQIKRALILPQAKHSDHCPHMVELAL"
     gene            complement(7103..8461)
                     /locus_tag="DHV98_04405"
     CDS             complement(7103..8461)
                     /locus_tag="DHV98_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HCK05598.1"
                     /translation="MAKTKTSFFCQNCGSSFAKWQGQCNSCKSWNTIVEEVISSQVPA
                     AWEQSTGSAARVAQPLPIEEIATSDTPRKSTHDTELDRVLGGGLVPGSLTLLGGEPGI
                     GKSTLMLQVGLRWPYKTLYVSGEESAQQIKMRADRLGKNKGQCLILTETQTQNILHHA
                     VEQQPEVVIIDSIQTLQSNQIDSGSGSISQIRTATAELIKYAKSTQTPVVLIGHITKD
                     GHIAGPKILEHMVDTVLQFEGDRHHVYRILRAHKNRFGSTNELGIYEMLSEGLRAVTN
                     PSELLISKTDEPLSGTAIAATLEGMRPLMIEIQALVSSAVYGTPQRSATGYNLKRLNM
                     ILAVLEKRVGFKLGAKDFFLNITGGIQVDDPALDLAVVAAVLSSNNDMPLMRSCCFAG
                     EIGLAGEVRPISRLDQRLSEAEKLGFTQIIVAKNSKIPKNTRIDVIQVGKVHDLVQHL
                     FI"
     gene            complement(8461..9615)
                     /locus_tag="DHV98_04410"
     CDS             complement(8461..9615)
                     /locus_tag="DHV98_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HCK05599.1"
                     /translation="MRSHFLLFIALIFCAQSWGQSKVIYEEFSSYKLGETRRLKIQLP
                     RDYESNTEKSYPIVIVLDANYLFEPVAGNVDYFGYWEDMPEALVVGIMQGESRYDDCF
                     YDDTNFMPADRGADFFEFIGMELVPFIDANFRTAKFIIAVGHDLTASYINYYLFKDPP
                     LFNGYIALSPDLAPMMDDRLPKRIPNIPQKLFYYLATGSDDIQDLQLVAKELNESLSA
                     LKSDQFNYYFDNFEGATHYSLVARAIPSALEKIFSVYRPISKQEFNDVLLKLETPVHL
                     YLLDKYQTIANLFGINNPIRINDFLASASACEKLKQWESLREIANLATRQYPDLILGD
                     YYMGRYYEETGDPKRAMRTFQGGFDKEEVDFITVDLMLDKADQIKYDFGY"
     gene            complement(9687..10634)
                     /locus_tag="DHV98_04415"
     CDS             complement(9687..10634)
                     /locus_tag="DHV98_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00374 family protein"
                     /protein_id="HCK05600.1"
                     /translation="MLKFLKIIIPVFLGVLLVWYFYQKFTPEQLSEMKRHFREANYAF
                     LLLSVLLSLASHILRTHRWHLLLKPLGHRPKWYNSFFAVCVAYFMNLFIPKSGEVSRA
                     VTLNQYENTPMEHGLGTIITERLIDLIFLALFFSLAIAMNYALLIDYISSLVPISKLL
                     WTLLVFSGVTVLFFLWVKGSKHPIALRLRQFITGLIQGMLSIKKVSAPAVFILESLLI
                     WGLYVASFYAATFALVETTGIGWEVIIITFVVGSFTFAFTNSGIGYYPLAVAGVMGLF
                     GIAQPLGNAFGWLIWTANISSIIFFGLIALIGLPLVNKK"
     gene            complement(10668..11018)
                     /locus_tag="DHV98_04420"
     CDS             complement(10668..11018)
                     /locus_tag="DHV98_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HCK05601.1"
                     /translation="MLIHVVKSKIHRVKVTGADLNYIGSITIDEDLMDAANIVPGEKI
                     QVVNNTNGNRLETYVIPGPRKSGEITLNGAAARLVSVGDVLILMTYAMMTPEEAKVFS
                     PAIVFPEESTNLLR"
     gene            complement(11032..11880)
                     /locus_tag="DHV98_04425"
     CDS             complement(11032..11880)
                     /locus_tag="DHV98_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HCK05602.1"
                     /translation="MTTLHTKEELQTILAPEKQNQKRIGFVPTMGALHQGHLTLVSRA
                     LEECDHVVVSIFVNPTQFNNAEDLAKYPRHLDNDLAQLASVSRNILVFAPAPENIYGT
                     QVSARQYDFGALGQHMEGQHRPGHFDGVATVVSLLFDAVTPDRAYFGEKDYQQLRIVE
                     TLVQIEQRDTIIVPCSIARNSEGLALSSRNERLDDEQLNQALLLARVLNEARKNFNSH
                     SFQAIKNAVTAAFEKAPEFDLEYFEIADVDSLVPTLMKDPEKKYRAFIAAQIGGVRLI
                     DNLELN"
     gene            11981..12793
                     /locus_tag="DHV98_04430"
     CDS             11981..12793
                     /locus_tag="DHV98_04430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase"
                     /protein_id="HCK05603.1"
                     /translation="MKDKRVLYVSSEVVPYLPETEISSMSFEAPRAVNNNNGQIRIFM
                     PRYGNINERRHQLHEVIRLSGMNLVINDMDMPLIIKVASIPKERMQVYFIDNDDYFKR
                     KATYADEDGVLFEDNDERALFFAKGVVETVKKLNWGPDIIHVHGWLASLLPLYLRTYY
                     GNEPLFDGCKIVTSIYSQDFEGTLCQDLSKKISFDGIDGAQYAHLDTPSYLNIMKTAI
                     DHSDAVIEGSPDLSDELSAYLKKATCPVLNFHNKDEFSQAYIDFYKSKVLGA"
     gene            12738..13940
                     /locus_tag="DHV98_04435"
     CDS             12738..13940
                     /locus_tag="DHV98_04435"
                     /inference="COORDINATES: protein motif:HMM:PF14092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05604.1"
                     /translation="MNFLRLISIFTNQKSSEPRLSKFMNVTQRIPHFLWVLLVIIGFA
                     SCDESFTNLDTDLIDQNYTTPDTVFSVRAYSRFVGPVQSNNQLSYKLGYYNDPLFGPH
                     SADFLTQVVLSANNPAFSVDTLNPVLEKVVLTLPYYSTSDTDDEGNPVFDLDSIFGSD
                     PIKLSIYESNYFLRDFDPATGFADPQQYFSDQRQTFQDQLGTLLVEIPEFVASNEVDE
                     FIIEDLDTLSFNPGINLELPLEYFQEKIWDQQNQEVLLNNNNFKDYFRGIYFKAEPVD
                     GSGHQTIFDPTEGKITLYYSAETSTFDDSGNQSTNDDGEIIRDVFSYDLNFSAIKVNV
                     FDHQWPTEVTQAIESGDSIQGAETLYVDGNDGIATIIDLFGNDDNQNGLDDLQELREE
                     XENIIKLN"
     gene            13931..14182
                     /locus_tag="DHV98_04440"
     CDS             13931..14182
                     /locus_tag="DHV98_04440"
                     /inference="COORDINATES: protein motif:HMM:PF14092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05605.1"
                     /translation="MKLTAHVSNLINRDSTNVSLGLVVSQNVSYVGFFDMQTPLLEQG
                     FDRIPGGAIVAPQGTALHGNLASDPEKRLRLELYYTKPE"
     gene            14285..>15182
                     /locus_tag="DHV98_04445"
     CDS             14285..>15182
                     /locus_tag="DHV98_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010516470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HCK05606.1"
                     /translation="MCGIVGYIGSKEAYPIVLNGLKRLEYRGYDSAGIALYDGANTHL
                     CKTKGKVSSLAEKFSAQGVPQAQIGIGHTRWATHGVPNDVNSHPHTSNSGDLILVHNG
                     IIENYASLKTVLQQRGYVFHSDTDTEVLVNLIEEVKKTNNVKLGKAVQLALKEVEGAY
                     AIAVFDQTKPNEIVVAKLGSPLAIGVGENEFFIASDATPFIEFTNQAIYLEDHEMAVL
                     RLGRDVRVRDLKEDIRLDSAIQELSLSVEQIEKGGYDHFMLKEIYEQPRAILDTFRGR
                     LLPSEGLIKLSGLDNYLSRFIQA"
BASE COUNT         4130 a         3133 c         3409 g         4348 t
ORIGIN      
        1 tatttatcct atagaagagt ttaattttaa cacattacta aggaaatcca caaattgagt
       61 gtatttttag gctctttttg aaacaattaa ccctaaaatt aacataatga atttcaaaaa
      121 ctatctattg gtgttttgtg cggctttgat cagcgttact ctttcagctc aagaagaaac
      181 acaaaaccaa tcccaaggag tggccaattt tggcgaatct cttcctaagt actatgtgcc
      241 ttctatggca tcacgtagcg aactcattcc cgcagaatac accgaggaag aagctcgtga
      301 ccgtcgttcg atccgaaacc gtgtggtgat cggaaaagag aaacaaacca cagatgatta
      361 ttacgtatta aatcgtcatg aaaccgagca gagcgttcgt gtaatgcctc cttcaatcgt
      421 ttttgatgct tattcatcag gttcacagcc cacagatcct tcaatggccg taggtattga
      481 tcatgtcttt gtcgtgtaca acacggggta tcgtattttc gataagtcgg gaaatccttt
      541 aacgggacag ttggcggtaa ccaatatttt ctcagctgga ggatgttgtg atcttaccgc
      601 gtcttttgat actgcagccg gtcgttgggt aatcagttac ttatttggta acggtaacgt
      661 tcaggtagcc gtgtccgatg gttcggatcc actcaccagc ggatggaatg tttataccta
      721 cacgggtgtt agtgattacc aaaaactttc ggtttggagc gatggatact acatcactgc
      781 caacactaac ccaagacgtg tttgggcttt ggagcgtgac gaaatgcttg ccgggagtac
      841 tacggcgagt ttccaaacat ttaatttaac aggaattcaa acgtctggtt tttacagtcc
      901 tcaagcacta aacgtgagtg atggaacgat gccagctgct ggaggagcga ccattgttta
      961 tttacaagat gatgcctggt caggagtctc tcaagaccat attaagtttt ggactatcga
     1021 cgtagattgg gcgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnccaccc acaacagcgc gatattcaac catgttgttg atgtcgatgc
     1201 tacaggaggc gaattggcag gagtgcgttg gtatgaattc cgtcaggcag gagacaatca
     1261 gccttggact ttgttccaag aaggaaccta tacggctcca gacgggcgtc atgcatggca
     1321 cgcgagtatg attatggatg gtaatggaaa tatcggtatg ggatattctt ctatgtcggg
     1381 acctaccact actgatgttg ttcgtgtaag ttcatattat acagggcgtt ttgacggaga
     1441 tactccagga gtaatgactg tttcagaaga attaatcgcc aatggtaacg cgaacattcc
     1501 tggtttgcgt tatggagatt acagtaaaat cgatatcgac cctgcagatg atgccacttt
     1561 ttggtttatc aatgaataca tgaacagcgg tcgtaaaggt gtagttggtg cattccaatt
     1621 gcaacccaat accacagttg atgatattgg ggtaaccacg attagctctc cagtgagtgg
     1681 tcaattgtca aatgccgaag aaattaccat taacgtaaga aactttggga ttaatgacat
     1741 cgttgatcca caagttcaat acacgattga cggaggaact ccagttgtag aaacatatac
     1801 cggagtactt gcagcagggg ctacagagac ctatacgttt tcaacgactg cagatctatc
     1861 aatccaaaac caaatttata cgattgcttc acgtaccaac tatggtcctg attcaaatcc
     1921 agcgaatgat gaagcgacta aaacggttca aaactcaatc atctactgta cgcctaccgg
     1981 agactgtagt ttgggtgatg gctttacttt ggtttctgta gagcaaatca acaacccttc
     2041 tgcttgtgaa ggttatggtg atttcaccac tcaagtggcg agttttgccg ctggcgagac
     2101 ctaccaagta acctttacca caggatatgg gaatcaacat gtaaagggtt ggattgattt
     2161 caacgacgat ggagccttta gcgccaatga attggttgtc cctaactttg tgattgctcc
     2221 aggatctgct ggaggaacct atactgctac tacggactta gttgttcctg caggagtgcc
     2281 aagtggaatt cacagattgc gtttcaaatc aaattggaat gcgccggttc caaacgatcc
     2341 atgtgaggaa acaacctatg gtgaaactga agactattca gccgatattg atggagtgct
     2401 tgggattact caggcagcca ttagcaatgc tgatttaatt gtgacnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnggtcac cagctatgaa gatcgtgctg ccattggtgt
     2521 atacaatgta ttgggtcaat tgttggcgtt taactacatc gaaaaggaag gcgatcgctt
     2581 taactatcaa ttagatatgt cttttgcgcc ttcaggtgtt tacattataa aaatgggaga
     2641 tatcttctcg aacatttata aaacagcgaa gattattgtg aagtaatttt tgcgcgtata
     2701 ttataaaaat gggccgtctt tagacggccc atttttttta gaaaaacgcc cgtaattgca
     2761 tcgagcccgt atgaattgtc gggctgtctg gactttgcct gccgaaatag gaaaaattca
     2821 agtctaaaaa gctattgatt cgtttttgcc aaaggacatt ccaggtgtaa ttctctcctg
     2881 gctgaagccc ctcgagcatg agataggcca aagaagaata ggccgagcct tcaaattgat
     2941 tattgatgct attaatttct gcggttaaag acattttatc ggcctttgcc aaagtgcagg
     3001 aaacgccaaa attgttttgg tttaggaact cacgtgcgcc cgttgtattt tctttttggg
     3061 ccgcagacca ataaatattg accctagaat tttctcccca gaaatagctt attttaggtt
     3121 taatacctct gtgtaaaaga ctaaagttgc gttgggcgaa gttttccgag cggttttcac
     3181 gccgattgta ctccgcagtg agatgcgcca gcagttggct tttaatttta tgatcaaagg
     3241 ttagctgatg ttgttctaag gtcgtttgct gcaatcctag agcaatgagt tgattgtttt
     3301 cattgcgctg ataaatatag gccgtggtat agtattggcg atttcgatta aaaaataagg
     3361 cctgttttaa gttcatctgt aaggccagat cttcagtgtt atctccaccg aatgggttga
     3421 tgaaaattaa attgtctttt ggcgtacttc ggtcaatagc gaacgaagtt tgactgtaaa
     3481 aatgggctaa aaatcctttg agccccggac tattttgcca tgaggaaaat tgccaagtca
     3541 tgagttgtgt cagcgcaccg cgctgtatgt cgataaaggt ttgattgggc aaaagcaaac
     3601 ggacataggc cgcttgatct tggtattgtg ccatttcgaa ttcatcgaga tcttgaatgc
     3661 catcttcatt gtaatcgatc catgtgtaag tcccttggcc aggctctacg gctacataag
     3721 taaattcttg ttgagggagt ttcccattat tggcttcaat atttgtggaa atgcgcaaac
     3781 gattctccca taggttttgg gcaaagctca gacgcagatt aagtgatttt tgcccttcaa
     3841 atatcgtgtt agaagtggac aggttgcggt actgtgcgaa tccagataat ttagttttat
     3901 ggttattgat caattgcgct ttagcgaaaa catctcgcgc gatacccacg cgatttaacg
     3961 tccctgagac caaactatct gtatcgcgat aacgccaccc taattctgta aataccgccg
     4021 tgctgtcccc aatacccatg gccgtctcat aggcaataaa tttctgactg agcccgttga
     4081 gttggtctag cgaatcttta acacggttgt tttcggtgag gaatttggcc ctgacccaac
     4141 ggttatcact tgaaatacct atggattgat gcgctcttag aaaattactt tcgccgttga
     4201 ttgcactggt attaaggttg ctgaattggc cctggtacca ccatttttta ccccttagat
     4261 tactgaggat actgtgtttt tgaccgatgt aatcgccact tgttatcagt tgatcaaatt
     4321 gataggtggt ctctccgtgt ctttggttaa gccattggac ccccaaagtg cttagtgttt
     4381 gatcccgaat aatctgattt atcggtaaat tccaatctcg attaaattcg acttggtata
     4441 aaagctcagg gctacgatag tttttatcaa ccgcgttaag gcgtatgaat ccattaaggg
     4501 tccaaagact gtcttgttgc gtcaagactt gtcgggcatt gatgagtcca gcatatccgg
     4561 tgttgtcctg gtcgtcctga ctgctgtagc ggtttaaatc gttatcgctg gcactgaatt
     4621 ctccttcaat ttgtgttttg tccttcttgt aacgaacaaa ggcccctgct agctgtaatt
     4681 tttgcgcggg ggtgagtttt atcactgggc tataagaacc ttgaggtacg ccatcaatag
     4741 gcggaacgta cgcaaatatt ttattgatac tggtttgact ttggacgaca taatctccct
     4801 gattggggcc cattagggtg aatcggactt gataaagttc atcctgcggg ttatttgaaa
     4861 agacaaagac ttgttggccc tggataattt cctttttgta gagaatctgg ttttctgaat
     4921 aagtcgccgc ttgttctgag ggcgctaata gggcttgagg gttatccccg gcagttttta
     4981 aaacttcttg ctgtgcttgg gtgaaattct gttgaagggg ttgattttta tcgtcttgct
     5041 cagtgtacaa gtaggcccct atgttcaggt gctcgctttg atattctcct ccagtattgg
     5101 cgataaatct agtgtaattt ctttcggtga tttgatattc agccgtaata cgcatattgc
     5161 tgtttatcgg gtaggtgggg ttaaagcgta attcacccgc gttgtaatca atcacatagt
     5221 ccgcgttctc tccccgctgg agcaataccc cattaacata aatccgctca cttccagaaa
     5281 tcatgagaat gagcgcttct ccgtttgccc ccagcagttt gtaaggccct tgattgccct
     5341 cttgcccttg aatgaggctg cgcttaaaaa ctccacgaac caatccagcg gcggcaaaca
     5401 tgctggtttc acttccgtcc ttgtgatcta tttgccaggc cgcgtgcatc ccctgaatct
     5461 ttttagtgaa ttgcccgaag atcgttttgc gattaatcag gtcaacatcc ccggcgcgca
     5521 attgccagcg gtccgcttca agggccacaa ataattgatc aaactcttca agactctggg
     5581 tgtatccccc attttcaccc ggtaaattac tgtcttgtaa agaggcggta atctggacct
     5641 tgtcgcttaa ggctccggta atttgaaggt ccagttgact gttgaccacc gcattttggt
     5701 tgttgcccac agtgaggccg cgcacgatac tcccctgagc attgatacca gaaaaaggat
     5761 ttttttcttt tgtaaaatta ttttcgctaa gacggtatat tttacccatt tgatcttggg
     5821 caggaagaat gagctctgga ttcaatgcac tataagtttt ggtcaaataa ttagggtagc
     5881 gcaagtagtg gataataatc gagtcgttgt cttggcctac tgcagagtcc agaatgagtt
     5941 gtgcttttga aaaaaggcct gtgtaaagac tgcggtcaat gggcgtaaga tcaaggcgta
     6001 aaacgcgaaa ttgattgggg ttgatcgaaa tggaatcaaa ggtgatcgta tcggcaactt
     6061 taacggtttt actgcgccct gtccaggacg cttggtcttg tgccattacc acggggaccg
     6121 accacatcca aagtgcgatc agcaaataag tcgagcgaag taactttgcg gtcaaagcca
     6181 taaaaacagg acaagtctca ttggataaac tgaatccgcc tcgaattatt ttgttgattg
     6241 ttttttgaaa attgcgttgc gggttattag ggtaaatata cgggcttatt taatttagtg
     6301 cacagcaatg aatcactcct aaaatcaaat gttttgaaaa taatctccta taatgtcaat
     6361 ggaatacggg cggccatgac caagggctta atcgaatggt tacagcaggc caatcccgat
     6421 gtattctgta ttcaagaaac taaggccatg aaggatcagg ttgatttggc cttgattgag
     6481 caagcagggt atccttatca ctattggttc agcgctcaaa aaaaggggta tagtggggtg
     6541 gcgatttttt gtaaaactga acctgatcat gtagcctacg gaacgggcat tgattatatg
     6601 gatgcggaag ggcgcaattt acgcgtcgat tttccaggag tttccattat gagtttgtat
     6661 ctgccaagcg ggacaaacga cgatcgcctg gattttaagt tccgatatat ggatgacttt
     6721 ttggcttatg tgaccacatt acgaaaggag taccctaagc ttgtcatttg cggtgattat
     6781 aatatttgtc atcaccccat cgacattcac gaccccatac gcaacgcaaa agtctcggga
     6841 tttctgccca gagaacgcgc gtggctggag gactttgtcc aatcgggttt tgtcgatagt
     6901 tttaggcatt tgaataaaga accgggacaa tacacctggt ggagttatcg tgctaatgcc
     6961 cgagcgaaca ataaaggttg gcgtattgat tataacatgg tcaccgagcc actgcgcgat
     7021 caaattaagc gggctctgat tttaccacaa gccaaacaca gcgaccattg cccccatatg
     7081 gttgagctgg ccttgtaagg gactagataa atagatgttg caccaaatca tggactttgc
     7141 cgacttggat cacatcgatt ctggtattct tggggatttt actgtttttg gccacgataa
     7201 tttgagtgaa cccgagcttt tcggcctcag aaagacgttg gtccaaacga cttataggac
     7261 gcacctctcc ggcgaggcct atctccccag caaaacaaca actgcgcatt aaaggcatat
     7321 cattattcga agagagaaca gccgcaacca cggcgaggtc gagagcaggg tcgtccactt
     7381 gaatccctcc cgtgatattt aaaaagaaat ccttggcacc gagtttaaag cctactcgtt
     7441 tttcaaggac cgcaaggatc atgttcagtc gtttcagatt gtagcctgtt gccgagcgtt
     7501 gtggggtacc ataaacagca ctactcacaa gcgcttgaat ctcgatcatc agggggcgca
     7561 tcccttctaa ggtggcggcg atcgcggttc cgctgagggg ctcatcagtt tttgaaatga
     7621 gcagttccga tgggttggtt accgcgcgca aaccttcgct gagcatttcg taaataccta
     7681 attcgttagt gctgccaaat ctgttcttat gagcccgtaa aatgcgatag acatgatgac
     7741 ggtcgccctc aaactgcaat actgtgtcca ccatatgttc taaaatcttt ggccctgcga
     7801 tatgtccatc tttggtaata tgtccaataa gtaccactgg ggtctgcgtt gatttagcgt
     7861 atttgataag ttctgcggtc gcggtacgaa tttgagaaat actccctgat ccgctgtcta
     7921 tttgattgga ttgcaaggtc tgtatggagt caatgatcac cacttcaggc tgctgttcca
     7981 cggcatggtg caaaatgttt tgcgtttgtg tttctgtcaa gatcaaacac tgtcctttat
     8041 ttttacctaa acgatctgcg cgcattttga tctgttgcgc gctttcttct cctgagacat
     8101 aaagggtctt gtagggccag cgcagaccga cttggagcat gagcgtgctc tttccaatcc
     8161 ctggttctcc gccaagtaag gtcaaagatc caggaactag gccgccgcca agcacccggt
     8221 cgagttccgt atcatgagtt gatttacggg gggtgtcgct ggtggcaatt tcttcaatag
     8281 gtaatggttg agccactcga gccgctgagc ctgtggattg ttcccaggca gcgggcactt
     8341 gactgctaat gacctcctca acgatggtat tccaagattt gcacgaatta cattgtccct
     8401 gccatttggc aaaggaactt ccacagttct gacaaaaaaa acttgttttt gtttttgcca
     8461 tcagtaccca aaatcatatt taatttgatc tgctttgtcc agcatcaaat ctacggtgat
     8521 aaaatcgact tcttctttgt caaatccccc ttgaaaggtc cgcatggcgc gtttgggatc
     8581 acccgtctct tcatagtagc gccccatata ataatcgccc aaaatcaaat cgggatattg
     8641 gcgtgtggcc aagttggcta tttctctgag cgattcccat tgtttgagct tttcacaggc
     8701 agaagcagac gccaaaaaat catttattct gatggggtta ttgatgccaa agagattggc
     8761 aatggtttga tatttatcca agagatagag gtgtacgggt gtttcgagtt tcagcaaaac
     8821 atcgttaaat tcttgtttag aaataggacg atacaccgaa aatatttttt ctaaagcgga
     8881 tgggattgcc cgggctacga gtgaatagtg ggttgctcct tcaaaattat cgaagtagta
     8941 attaaattgg tccgacttca gtgcgctcag cgattcatta agttctttgg ccacaagttg
     9001 taaatcttgt atatcgtcgc tgccagtagc taaataataa aatagctttt ggggaatgtt
     9061 gggaatacgc ttgggcaatc gatcatccat cattggcgcg agatctggac ttagcgcgat
     9121 atagccatta aataagggag ggtctttgaa taagtaataa ttgatatagc tggcggtaag
     9181 atcgtggcct accgcaataa tgaatttggc ggtgcgaaaa tttgcatcga taaaaggcac
     9241 gagctccatg ccaataaact caaaaaagtc agcgccccgg tctgcaggca taaaattagt
     9301 gtcgtcataa aagcaatcgt cgtagcgact ttctccttgc ataattccta ccaccaaagc
     9361 ctcgggcata tcttcccaat acccaaaata atcgacattt cccgccacgg gctcaaacag
     9421 ataattcgcg tctaaaacaa tgacaatagg gtaagatttt tccgtattgc tctcgtaatc
     9481 tctgggaagc tgaattttaa gacgtcgcgt ttctccaagt ttatacgagg aaaattcttc
     9541 gtaaataact tttgactgac cccagctttg ggcacaaaaa attaaggcaa taaacagaag
     9601 aaaatggctt ctcatgggta gaaattttca atcagaaaga tagtaaaatt atgccacccc
     9661 tttagcgata agactccggg gatttcttac tttttattca caagaggcag gccaatcagg
     9721 gcgattaatc caaaaaagat gatggaagaa atgtttgctg tccaaatcaa ccaaccaaag
     9781 gcgttgccta ggggttgagc aatgccaaac agtcccataa cgcctgcgac tgccagagga
     9841 taataaccaa taccactgtt cgtaaaggca aaggtgaaac tcccgacgac aaaggtgatg
     9901 atgatgactt cccagccaat ccctgtggtc tcaacaagag caaaagttgc ggcgtaaaat
     9961 gaagccacat agagtcccca aatcaaaagg ctctctaaga taaaaactgc gggcgccgag
    10021 acttttttaa tgctcagcat tccttgaatt aggccggtaa taaattgacg caaacgcaag
    10081 gcgatagggt gttttgatcc tttgacccag aggaaaaaca aaacggttac tccactaaag
    10141 acaaggagtg tccaaagtaa ttttgatatg gggaccaagc tactaatata gtctatgagt
    10201 aaggcgtaat tcatggcgat ggcgaggctg aaaaatagcg ctaaaaaaat caaatcaatt
    10261 aatcgctctg taatgatggt gcccaggcca tgctccatgg gggtattttc atactgattt
    10321 aaagtcaccg ctcgtgatac ctcaccactc tttgggataa atagattcat aaaataagcc
    10381 acacatacgg caaaaaaact gttgtaccat tttggtcgat gccccagtgg ttttaggagc
    10441 aaatgccaac gatgggtgcg cagaatatgg ctggctagtg aaagcaatac agaaagcaac
    10501 agaaaggcat agtttgcttc tctaaagtgg cgtttcatct cgctcaattg ttctggcgtg
    10561 aatttttgat agaagtacca caccagtaaa accccgagga atacggggat aatgatttta
    10621 agaaatttga ggatttttga cttcaattag gagaaaattt taatggccta tcgaagcaaa
    10681 tttgtcgatt cttctggaaa cactatcgct ggagagaata ctttggcctc ctctggagtc
    10741 atcatggcgt aagtcattaa gatcaaaaca tcgcctacgg aaaccaatcg agcggcagcg
    10801 ccattgagcg ttatttctcc actttttcga ggtcctggaa tcacgtaggt ctcgagtcga
    10861 ttaccgtttg tattgttgac cacctgaatt ttttctccag gaacaatatt ggcggcatcc
    10921 ataagatctt catctatagt aatacttcca atataattta gatcagcacc ggttacttta
    10981 acgcgatgaa ttttagattt tacaacgtga atcaacatgg gcccaaaggt attaatttag
    11041 ttcaagatta tcgatcagac ggaccccccc aatctgagcg gcaataaatg cccgatactt
    11101 tttttctggg tctttcatta aggttggaac cagtgaatca acatcggcga tttcaaaata
    11161 ttctaggtca aattctggag ctttttcaaa ggccgctgtc accgcgtttt ttatggcttg
    11221 aaaagaatgt gaattgaagt ttttacgcgc ctcattgaga acgcgcgcca agagtaatgc
    11281 ttgattaagt tgctcgtcgt ctaggcgttc atttcgggag ctcagggcaa gcccttcact
    11341 atttcttgct atggagcagg ggacaatgat cgtgtcgcgc tgctcgatct gaacgagtgt
    11401 ttctacgata cggagttgtt ggtaatcttt ttctccaaaa taagctctat caggggttac
    11461 ggcatcaaaa agtaaagaaa ctaccgtagc gactccgtca aaatgaccgg gtcgatgctg
    11521 tccttccata tgttgtccaa gagccccaaa atcgtactga cgggcactga cttgggttcc
    11581 ataaatattc tcgggggcgg gcgcaaatac gagaatgttg cgactcacgc tggccaattg
    11641 ggccaaatca ttatcgagat gtctgggata ttttgcaaga tcctcagcat tattaaactg
    11701 agttgggttt acaaaaatac tcaccacgac atggtcacat tcctcaaggg cgcgcgaaac
    11761 cagtgtgaga tgaccttgat gcaaagcccc catagtggga acaaaaccta tgcgtttttg
    11821 gttttgcttt tcaggcgcta aaatggtctg taattcttcc ttagtgtgga gtgttgtcat
    11881 ggtgcgtgaa atcgagcaaa attaagatat tcacggcaat ctgcataaat tttcgtaatt
    11941 ttgcatcctc acagcagtta cggaaaattt ttaatgtttt atgaaagata aaagagtctt
    12001 gtatgtgtct tccgaggtgg ttccttacct ccccgagact gagatttctt cgatgtcgtt
    12061 tgaggcccct agagcggtga acaacaacaa cggtcagatc cgcattttta tgcctcgtta
    12121 tggcaatatc aatgagcgtc gtcaccaact acacgaagtg attcgtctat cgggaatgaa
    12181 tttggtgatt aatgacatgg atatgccact gatcatcaag gtcgcctcta ttccaaaaga
    12241 gcgcatgcag gtttatttca ttgacaatga cgattatttc aagcgaaaag cgacttatgc
    12301 cgacgaagac ggtgtacttt ttgaggacaa tgacgagcgt gccttatttt ttgccaaagg
    12361 ggtggtcgaa acagtaaaga aactcaattg gggccctgat atcattcatg tgcacggttg
    12421 gctcgcttct ttattgccgc tttatttgag aacctattat ggaaatgagc ccttatttga
    12481 tggttgtaaa attgtgacct caatttacag tcaagatttt gagggtacat tatgtcaaga
    12541 cctttccaag aaaataagtt ttgatggaat tgatggcgca caatacgcac atctagacac
    12601 gccgagctac ctcaatatca tgaaaaccgc gatcgatcac tccgatgcag ttatagaagg
    12661 ttctccggat ttgtccgatg aattatccgc ttatctcaaa aaagcgacat gccctgtgtt
    12721 aaactttcat aataaagatg aattttctca ggcttatatc gatttttaca aatcaaaagt
    12781 cctcggagcc taggctctct aaatttatga acgtgacaca gcgtattcct cattttcttt
    12841 gggttttatt agtgatcatt ggttttgcct catgtgatga gagttttacc aatcttgaca
    12901 cggatttaat cgatcaaaat tatactaccc cggacactgt tttttctgtg cgcgcctaca
    12961 gtaggtttgt cgggccagtg cagtctaaca atcaattgag ctataagctt gggtattaca
    13021 atgatccgtt atttggccct cattctgccg actttttaac tcaggtggtg ttgtcggcga
    13081 ataaccctgc attttctgtg gacaccctca atccagtctt ggaaaaagtt gttttgaccc
    13141 ttccttatta cagtacttca gatacggatg acgagggaaa tccggtattt gacttggatt
    13201 ctatctttgg tagcgaccca attaagctct cgatatacga gtccaattac ttcttgcgcg
    13261 attttgatcc agcgaccggt tttgcagatc cacaacaata tttttcagat caaagacaaa
    13321 cctttcaaga tcaactcgga acgctacttg tagaaatccc tgaatttgtg gcgagcaatg
    13381 aggtagatga attcattatc gaggacctgg acacccttag ttttaatccc ggcattaatc
    13441 tggaattgcc cctagaatat ttccaagaaa aaatttggga ccaacaaaac caagaggtcc
    13501 ttctcaataa caacaatttt aaagattact tccggggtat ttactttaaa gctgaaccag
    13561 tcgacggaag tgggcatcaa actatttttg atcccacgga aggaaaaatt acactatact
    13621 actctgcgga gacctcaact tttgatgact caggaaatca atccaccaat gacgatggag
    13681 aaattattcg agacgttttt tcatacgatt tgaatttttc tgccattaag gttaatgttt
    13741 ttgatcacca gtggccgact gaggtaacac aggccataga atcgggagat tctattcagg
    13801 gcgcagaaac cttgtacgtc gatgggaatg atggaatcgc cacgatcatt gatttattcg
    13861 gtaacgatga caatcaaaat ggccttgatg atctgcagga gttgcgtgag gaagnngaga
    13921 atattataaa attaaactga ccgcacatgt gagcaatctc attaaccgag attcaaccaa
    13981 tgtgtcttta ggtttggtag tttctcaaaa tgtatcctat gtaggctttt ttgatatgca
    14041 aaccccgctt ttagaacaag gatttgaccg catccccgga ggggctattg tcgctcctca
    14101 aggcaccgca ttgcatggca atttagcttc tgaccctgaa aaacgactgc gtttggaatt
    14161 atactacacc aagccggagt aattttttag acgaactgaa atgaagaact accgataaat
    14221 aaatatagaa tgtaatgtgc agtaggttgt ctcctaccgc atttaattag tatttttaac
    14281 gattatgtgt ggtattgtag gatatatcgg aagtaaagaa gcttacccca ttgttttaaa
    14341 tggactgaag cgtctagaat atcgtggtta cgatagtgct ggaattgcct tgtatgatgg
    14401 ggcaaacacc catttgtgta aaactaaagg caaggtcagt tctttggctg agaaattctc
    14461 tgctcaaggc gtaccacaag cgcaaattgg tattggccac acccgttggg caacccatgg
    14521 ggtccccaat gatgttaact ctcacccaca tacctcaaac agcggagatc taattttagt
    14581 gcataatggc ataattgaga attacgcgtc tctaaaaaca gtactccaac aacgcggcta
    14641 tgtatttcat agcgacacgg ataccgaggt tttagtcaac ctgattgagg aggtaaaaaa
    14701 gaccaacaac gttaaattag gaaaagcagt acagttggct ttaaaagagg tggaaggcgc
    14761 ctacgcaata gccgtattcg atcagacgaa gcctaacgag attgttgtgg ctaagctcgg
    14821 aagccctttg gccatcggcg taggggagaa tgagtttttc attgccagtg atgccactcc
    14881 ttttattgaa ttcacgaatc aagccattta tcttgaggat catgaaatgg cggtattgcg
    14941 ccttggtcgt gacgttcgcg ttcgtgactt aaaggaggat atccgcttag attctgccat
    15001 acaggaattg agcctcagtg tagaacaaat cgaaaaaggg gggtatgacc actttatgct
    15061 taaagaaatt tatgagcaac ctcgcgccat attggacacc tttcgggggc gactactccc
    15121 ttcagagggg ctcataaaac taagcggcct ggacaattat ctttcgcgct tcattcaagc
    15181 gg
//
LOCUS       DPUP01000127           11562 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9128,
            whole genome shotgun sequence.
ACCESSION   DPUP01000127 DPUP01000000
VERSION     DPUP01000127.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 11562)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 11562)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11562
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>427)
                     /locus_tag="DHV98_04450"
     CDS             complement(<1..>427)
                     /locus_tag="DHV98_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCK05607.1"
                     /translation="VNLGYICNQVCAHCHVDAGPDRKEIMTQETMEHCLKIMESSGVK
                     TLDLTGGAPEMNPNFRWFVTKAKARGVNEIIVRSNLTIIVANKKYHDLPEFFAQHQVH
                     VVSSMPHWTKEKTDRQRGSGVFEDSIKALKMLNDVGYGLT"
     assembly_gap    428..594
                     /estimated_length=167
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<595..807)
                     /locus_tag="DHV98_04455"
     CDS             complement(<595..807)
                     /locus_tag="DHV98_04455"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HCK05608.1"
                     /translation="MSQTKVLQSLHKRQSPLAQTERQLKILEEGIFANGDAPKFGQKI
                     QQSLGAPLKTTGLDILQVNLGYMCNQV"
     gene            complement(814..>922)
                     /locus_tag="DHV98_04460"
     CDS             complement(814..>922)
                     /locus_tag="DHV98_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-carboxymuconolactone decarboxylase"
                     /protein_id="HCK05609.1"
                     /translation="KEEMMEAVHVGAAIKSGATLVHGVMMMNKVNKLDS"
     assembly_gap    923..1018
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1019..1249)
                     /locus_tag="DHV98_04465"
     CDS             complement(<1019..1249)
                     /locus_tag="DHV98_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-carboxymuconolactone decarboxylase"
                     /protein_id="HCK05610.1"
                     /translation="MSYYDPKDLRKFGRITEWSESLGEKFFDYYNSVFKEGALTPREK
                     SLIALAVAHTEMCPYCIDAYTKDGLERGITKEE"
     gene            complement(1379..>2203)
                     /locus_tag="DHV98_04470"
     CDS             complement(1379..>2203)
                     /locus_tag="DHV98_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079953.1"
                     /note="uncharacterized member of the SSS superfamily of
                     sodium-dependent solute transporters; unknown function;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HCK05611.1"
                     /translation="QKGLLLGSFIKILGPIIVVLPGIIAYHMFPNLSAVDQAYPQLVS
                     AVLPPALLGFFAAVIFGAILSSFNSVLNSSVTLFGIDIYKQHINPEADEATVVNKGKM
                     FGVVLAIGAMVIAPFIANAGSLFDYLQEINGIYSIPILTIIVVGYLTKRVPAIAAKIG
                     LLSGSLLYILSQFFLKPHYVSEALAAAKAEGITDPNTLSIIESQGYFGLHYLDVMAIL
                     FVLNVLIMLLIGKFYPRKEAYTIEYTKQVDIQPWAYTKPIGALIVLLVAAIYIYFR"
     assembly_gap    2204..2350
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2351..3166)
                     /locus_tag="DHV98_04475"
     CDS             complement(<2351..3166)
                     /locus_tag="DHV98_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HCK05612.1"
                     /translation="MTIISFIAFTALVAIIAYFASRKTNEKSADGYFLGGRSLTAGVI
                     AGSLLLTNLSTEQIVGLNGSAYESGLSVMAWESLAAIAMVVTALFLLPRYLKGGLTTV
                     PQFLANRFDTTTKTITSALFLTGYVVVLLPVILYSGSVAISGMFDIPAAFGVSNAQAI
                     YLCVWGIGLIGSIYAVFGGLKAVAVSDTINAIGLLIGGLLIPVLGLMAIGDGSLMNGL
                     SVLVAEHPEKLKSMGERTDPVPFYTIFTGMMLVQLFYWGTNQQIIQRALGAKNL"
     gene            complement(3197..4144)
                     /locus_tag="DHV98_04480"
     CDS             complement(3197..4144)
                     /locus_tag="DHV98_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HCK05613.1"
                     /translation="MNSSKNLSTDLICIGETLIDFIGTQIEAPISETKDYHRYLGGSP
                     TNVAMNMARLGMNVAMISSVGDDGFGDYMLSRFEEAGIDTQYMYRAPQTPSTVIFINN
                     TAGTPEFIAYRGADKEIYPNQIPDALLNSSKIYHTTCFALSLDPARETILSAAERAAQ
                     RGVQLSIDVNYSEKIWPNRNEAIEAITRYCQWGPLVKISQDDVDRLLGPGLSHHEVFE
                     YLHGLGAQTICFTLGKDGAKLSVAGQEVIQLSALKVEKIMDATGAGDAFWSGFLYGHI
                     KGQKPEKCLSSALKMAAIKLQNVGRIPDYADVISDILND"
     gene            complement(4181..5437)
                     /locus_tag="DHV98_04485"
     CDS             complement(4181..5437)
                     /locus_tag="DHV98_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK05614.1"
                     /translation="MNVGFLGIQFSFGLQQTAINPIFSFLGALPEELPILNLAGPVTG
                     LLVQPIIGALSDKTWSPKWGRRKPYFLIGAVIGSLCLFAFPYSPSLWFAVGLLWILDV
                     GNNMAMEPYRAFVGDKLPEKQLTMGYQMQSLFVGAGIVLANASIFIFQDWFADPSGDT
                     TQGIPTWLYYSFFLGAILSVVTILWSVLKTPEIPPTEQELKTLEAERKEPFLTRLQTP
                     FNEIASAVKLMPKFMWQLSAVYLFQWYALFIYWQYITPLFQESMGYDGAQALGQAAKM
                     STTYNITTIIVALLLVPITMRFGGKKTYAGSLFGTGAALLVIPFITDPITVLFPMILF
                     GIGWAAMMGIPYSMVSKIVPQERRGVYMGILNMMIVIPMGIETVTFGPIMKHLLGGSA
                     INAILFGGVFFIIAAILSLRLKPKAK"
     gene            complement(5721..>5982)
                     /locus_tag="DHV98_04490"
     CDS             complement(5721..>5982)
                     /locus_tag="DHV98_04490"
                     /inference="COORDINATES: protein motif:HMM:PF06445.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK05615.1"
                     /translation="FPIDSLTTRPTDPEVRFKTLAPRRYLKAIFNGNYRLSQQGWYTL
                     LDYAQSNGIKLGAEIIEIYRNDPHEGGDSMQWVAELLMPVEH"
     assembly_gap    5983..6034
                     /estimated_length=52
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6035..6712)
                     /locus_tag="DHV98_04495"
     CDS             complement(<6035..6712)
                     /locus_tag="DHV98_04495"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05616.1"
                     /translation="MKRAKKQKLFNLGIFFLAFVLMSYLFVFPYHYKVSFTTKQPPGV
                     VFDHLRAWPEFDQTDTAQVVNQDMVLYSRLVQNIDYPDGALSVDWSIKRHGDSTTRVE
                     GRFSATNEALKEKIRLPFGQSFVPSSSITLTQSLAQGLIEKSKNFKTHSISDTLTAPL
                     FCAYVPVHTKEGTKAQGMLRQISTVMHYIKDNKIPLKGDPFITISHWNPMTQDLSFDF
                     CFPIDSLT"
     gene            complement(6727..8076)
                     /locus_tag="DHV98_04500"
     CDS             complement(6727..8076)
                     /locus_tag="DHV98_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidic acid phosphatase"
                     /protein_id="HCK05617.1"
                     /translation="MKQLKFTALNFKKMSLVVAIGALSSCTPDQPIVVRSADFQSSVD
                     QVTRIMVHDIFSPPVASRIYAYPNIAAYEILAQSDPGMRSLTQSIDHLKPIPLAKDST
                     VNLALAALIAHMDLSKSLVFSEERMEHYRDSLYALWSKQNKSEFTQSKEYGLSVAQHI
                     KLWMNTDQYNQTRTMPKFTVITEDPSRWQPTPPAYMDGIEPHWNKIRPFILDSASQFK
                     PAPPPAFSLEKNSDFYKELMEVYDTSKRIEAQGDSSEEIQMAQFWDCNPYVSVTRGHL
                     MFATKKITPGAHWIGITKIACNKAQMDFRQTVSAYTYTSLAIFDAFISCWDEKYRSNL
                     IRPETLINQYIDENWKPVLQTPPFPEYTSGHSVVSGAASTVLTEIFGPDFTFDDDTEV
                     PYGLPVRSYPSFEQAAQEAAISRMYGGIHYRAAIEVGLQQGISIGHKLSESLFSIKN"
     gene            complement(8042..11335)
                     /locus_tag="DHV98_04505"
     CDS             complement(8042..11335)
                     /locus_tag="DHV98_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019669021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05618.1"
                     /translation="MRVTRNTYWTIFILIFGVLGCSKKESTLFISPDSETTGLKFKNT
                     LTPTDSLSILDYLYYYNGGGLAMGDLNNDGLPDLYFTANQGPNALYLNKGDLKFEDIT
                     NSAGVMGKSDWQTGCLIFDANGDGFQDLYISAVVGINGFTGHNELYINNGDLTFTESS
                     KAYGLDFEDFGTMSAVLDYDQDGDLDLYLLNHAVHTQESFGRVDLRYTRNPKTGDRLL
                     RNDGNVFTDVSEQAGILGGINAYGLGISIADFDKDGWPDIYVGNDFHEDDYYYHNNQD
                     GTFTEQLRSAFSHISRFSMGNDVADINNDGWPDLISLDMLPQSETLLKTSEGDDAVQT
                     LKLRTQAYGYHYQYSRNMLFINQKGKNFTETALYSGVAATDWSWSALFGDYDLDGYLD
                     LFISNGITRRPNNLDYIKFISNQEIHKQINDSRLVDQSAIEMMPSGAAVNFFYRGQKG
                     VKFDDVSGPWGSTQLSLSGASVVGDLDRDGDLDLVVNNTDGPAGLYVNQSINQDTESQ
                     NHEHLDQNNADINPLNNQQNSGLSISLSYTPLNPYAIGTKAYLYTEEGFQYREVYPVR
                     GFQSCSEPLLHFALPAKQSIKGLRIIWPNGQQQWVDSGLTPGFNTLKYSEKSLGLEAH
                     PEKNPPPEFLFVPEAGNLGINFTHKEDDFSDFNDQKLIPYKVSDHGPAYLSFDFNNDG
                     RKDILISGGKNQRTQVYTANKEGFEKEPNLGMALDSLQEFVDATVYNANGKPQLVLAA
                     GGNSVRPSASVFENKVWPMDQLNQVGIPLEGDLANTHVVRGHENLLFVGNFCGPQDFG
                     KAVPSYIFRDHQKILQIDNLGMITDALWMDHDQDGLMDLLVIGHWMSPRLFIQTPEGF
                     EENIEVFPDLKGLWRRVVAHDLDQDGDLDLLMGNWGLNSKLQASMEHPMKLWHNDFDH
                     NGASETILTTHRQGDDYPLLGLDDLAAQMVILRKQYNQYSAFANQPLTKIRGLDFDQV
                     HVLTVNELASGYFENQEGNYQFVRFDPQLQQSPINTFLVADFNQDQNTEILVGGNYFG
                     VIPFQGRFDSFSGAVIDHNGNIHSSADYGLDLWNKSVRHFDLISRNNQTYLIVIFNDE
                     TTEIYRIEF"
BASE COUNT         3128 a         2421 c         2426 g         3125 t
ORIGIN      
        1 cgttaggcca taacctacat cattaagcat ttttagggcc ttaatagaat cctcaaacac
       61 tcctgaaccg cgctgacgat ctgttttttc tttggtccaa tggggcatgc tgctcacgac
      121 atgtacctgg tgttgcgcaa agaattcagg taaatcgtgg tattttttat tggccacaat
      181 tatggtcagg ttactgcgta cgattatttc attcacccca cgtgctttgg ccttggtaac
      241 aaaccaccgg aagttcggat tcatctcggg ggccccaccg gtgaggtcta aagtttttac
      301 gccactggat tccatgatct tgaggcagtg ctccatggtt tcttgtgtca tgatttcttt
      361 tcggtctgga cccgcatcca catgacaatg cgcgcaaacc tgattacaaa tataacccag
      421 gttcactnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaacctg
      601 attacacata taacccaggt tcacttgaag gatatccagc cccgttgttt ttaagggagc
      661 acccagactt tgctgtattt tttggccgaa ttttggtgcg tccccattgg caaaaatacc
      721 ctcctctaaa attttaagct gtcgctctgt ttgggccagc ggactttgtc ttttgtgtaa
      781 agattgtaat actttggttt ggctcatggc gacttatgaa tccaatttat tgaccttatt
      841 catcatcatt accccatgga ccagcgtagc accacttttt atagcagccc caacatggac
      901 ggcctccatc atttcttctt tgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt
     1021 cttctttggt aatcccgcgc tctaatccgt ctttggtata agcatcaata caataagggc
     1081 acatctccgt gtgggcaaca gcaagggcga tcagggactt ctctcttggg gtcaaagccc
     1141 cttctttaaa aacactgttg tagtagtcaa aaaatttttc tcccagggat tcactccact
     1201 cggtaatgcg gccaaatttt ctgagatctt ttgggtcgta ataagacata aatgtatttt
     1261 ttagcgatta aatcgtttcc gatttagatt cttaaagata caacttcggc agaaagacat
     1321 cccttaacgc gcccctcttt taacgcccaa ttaacgcaaa ggaccggcgc gggttgattt
     1381 atctaaaata aatatagatg gcggcaacaa gcaagacaat cagcgcccca atgggtttgg
     1441 tataggccca gggttgaatg tcaacttgtt ttgtgtactc aatagtatag gcttctttac
     1501 gtggataaaa cttcccaata aggagcataa taagcacatt taacacaaag agtatggcca
     1561 tgacatcgag ataatgcaat ccaaaatacc cttgtgattc aatgatagaa agtgtgttcg
     1621 ggtctgtaat gccctctgcc ttagcggcgg ccaaagcttc acttacataa tgaggtttta
     1681 aaaagaactg gctcaaaata taaagtaaag aacccgagag taagcctatt tttgctgcga
     1741 tggcaggaac tcttttggtt agatagccca ccacgataat ggttaaaatt ggaatcgagt
     1801 agatgccgtt aatttcctga agatagtcga ataggcttcc agcattggca ataaatgggg
     1861 caattaccat ggcgccaatg gccaaaacga caccaaacat ttttccttta ttgaccacgg
     1921 tggcttcatc ggcctcaggg ttgatgtgtt gcttataaat gtcgatccca aacaaagtca
     1981 ctgagctgtt aaggacacta ttgaaggaac ttaagatggc cccaaagata actgctgcaa
     2041 aaaatccaag tagggctggg ggtagcactg cagaaacgag ttgaggatag gcttgatcaa
     2101 ccgcagaaag gttgggaaac atatgataag caatgattcc tggaagcacg acaatgatgg
     2161 ggccaagaat cttaataaag gagcccaaaa gcaaaccctt ttgnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn taggttttta gcgcccagtg ctcgctgtat aatttgttgg tttgttcccc
     2401 aataaaaaag ctgaaccaac atcatccccg taaaaatggt gtaaaatgga accggatctg
     2461 tacgctcgcc catagatttt aatttttcgg gatgttctgc caccaaaacg gatagtccat
     2521 tcataaggct tccatctcca atagccataa ggcccaaaac agggatgagt aatccgccaa
     2581 ttaacagacc aattgcattt atcgtgtcag acaccgctac agcctttagt ccgccaaaca
     2641 ccgcatagat ggagccaata agaccgatac cccaaacgca gagataaatt gcttgagcat
     2701 tggacacccc aaaggccgct ggtatgtcaa acattccact tatggccact gagccagagt
     2761 ataaaatcac aggaagtaac acaacgacat aacccgtcaa aaacagggca gaggtgatgg
     2821 ttttagtggt ggtatcaaat cgattggcca aaaattgggg tacggtggtg agcccgcctt
     2881 tgagatagcg cggcaataaa aacagcgccg taaccaccat ggcaatggct gctaaacttt
     2941 cccaggccat aacggagaga ccactttcgt atgccgatcc attgagcccc acgatttgtt
     3001 cggtcgataa attggtcagg agtaaagaac ccgcaataac cccagcggta agactgcgcc
     3061 cccctaaaaa atagccatct gcactttttt catttgtttt cctcgaggcg aaataggcaa
     3121 taatggctac taaggcggta aaagcgataa atgaaatgat ggtcatcggt tgtgtttttc
     3181 tcgttagttg ttaaagttag tcatttaaaa tgtctgatat aacatcggcg taatctggga
     3241 tgcgcccaac attttgaagt tttatggcgg ccatttttag tgccgaggat aaacatttct
     3301 ctggcttttg gcctttgata tgtccataaa gaaatccact ccaaaaggca tcacccgccc
     3361 cagtggcatc cattatcttt tcgactttaa gcgcggagag ttgaatcacc tcctggcctg
     3421 caacactgag tttggctcca tccttgccta aagtaaaaca aatcgtctgt gcgcccaatc
     3481 catgaaggta ttcaaaaacc tcatggtgac ttaatcctgg ccccagcaaa cgatccacgt
     3541 catcttggct aattttgacc aagggccccc attggcaata gcgcgtaatg gcttcaatgg
     3601 cttcattccg gtttggccaa attttttcac tgtaattcac gtcaatgctg agttgtactc
     3661 ctcgttgcgc cgcacgctcc gctgcggaaa gtattgtttc tctagcagga tctaggctta
     3721 aggcaaaaca ggtggtatga taaattttac ttgaattcag taaggcgtca gggatttgat
     3781 tgggataaat ttctttatcc gcaccgcgat aggcgataaa ttccggggtt cctgcggtgt
     3841 tgttgataaa aataacggta ctcggtgtct gcggggcacg atacatatac tgggtatcga
     3901 tcccagcctc ttcaaaccga ctgagcatat agtccccaaa accatcatca ccaacactag
     3961 agatcatcgc cacattcatg cctaatcgcg ccatgttcat ggcgacattg gttggtgacc
     4021 ctccgagata tcgatgataa tctttagttt cactaatggg agcttcgatt tgtgttccaa
     4081 taaaatcgat taaggtctcc ccgatacaga ttaaatccgt tgaaagattt ttactgctat
     4141 tcataactga ttgtgcattc atcaaaaatt acgatatcgt ttattttgct tttggcttaa
     4201 gtcggagcga taaaattgca gcaattataa agaaaacacc cccaaagagg atggcattta
     4261 tggcactacc gcccaaaagg tgtttcataa ttggtccaaa agtgacggtt tcaataccca
     4321 taggaataac aatcatcata tttaatatgc ccatgtaaac cccccggcgt tcttgtggca
     4381 ctattttaga aaccatactg taaggaatcc ccatcatagc agcccaacct attccaaaca
     4441 aaatcattgg aaagagaaca gttatcgggt ccgtgataaa tggaataaca agaagcgctg
     4501 ctcccgtgcc aaataaactt cccgcatagg ttttctttcc gccaaaacgc atggtaatgg
     4561 gcacgagtaa aagggcgaca atgatcgtag tgatgttgta agtggtactc attttggccg
     4621 cttgtccaag cgcttgagcc ccatcataac ccattgattc ctggaaaagt ggggtaatgt
     4681 attgccaata aataaagagc gcataccatt gaaaaagata aaccgccgag agttgccaca
     4741 taaattttgg cataagtttt acggcagagg caatttcatt aaaaggggtt tggagtcttg
     4801 tcaaaaaggg ttccttgcgc tcggcttcta gagtcttaag ttcttgctct gtcggaggta
     4861 tttctggcgt ttttaaaacg gaccataaaa tagtgaccac cgacaaaatg gcgcccaaga
     4921 agaacgagta atagagccac gttggtatgc cttgggttgt gtctcctgaa ggatcagcaa
     4981 accaatcttg aaaaatgaaa atagaagcat tggccaaaac aatccccgcg ccaacaaata
     5041 gactctgcat ttgatagccc atggtgagct gtttttcagg caacttatcc ccgacaaagg
     5101 cgcggtatgg ctccatcgcc atattgtttc ctacatccag aatccagagc aatcccacgg
     5161 cgaaccatag actagggctg tagggaaagg caaaaagaca cagactgcca atgactgccc
     5221 caataagaaa atacggtttt ctgcggcccc acttaggaga ccaggttttg tcagaaagcg
     5281 cccctatgat gggttgaacc agcagtcccg tcactggacc agcgagattt aaaatgggca
     5341 gttcttcggg taaggccccg agaaatgaaa atattggatt gattgctgtt tgctgtaatc
     5401 cgaagctaaa ttgaatgcct aagaagccga cattcatgtt ccagatgtcc cagaacgaga
     5461 gttttggttt tttggtcatg gtctattttt ggtcgttgtg ttaaggggtc atagtctgta
     5521 tcagtgtagg tttgggttga gagtaacccc tttgctagca tcttaaacag actatgacct
     5581 cttcaagatg cacaaaaaat atcagaattt ttagttttct attcgcgata tgagcgattc
     5641 ttaaacgaaa tcgttttcga gaacaattgc gccacagcgc cgcagcgttt taagccacaa
     5701 tcagagggcc ctgtcttggc ttaatgttct accggcataa gcagctctgc gacccactgc
     5761 atactgtctc cgccttcgtg aggatcattg cgataaatct ctatgatttc agcgcctagc
     5821 ttaattccat tactttgggc ataatccaat agagtgtacc aaccctgttg cgaaaggcga
     5881 taattaccat taaaaatcgc tttaaggtaa cgacgtgggg ctaaggtttt gaaacggacc
     5941 tcagggtctg ttggtcttgt cgttagcgaa tcaatgggaa agnnnnnnnn nnnnnnnnnn
     6001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncgttag cgaatcaatg ggaaagcaaa
     6061 agtcaaaact taaatcttgt gtcatcggat tccaatggga gattgtaata aaggggtcgc
     6121 cttttaaagg gatcttgttg tctttgatgt aatgcatgac cgtactgatc tgtcgcaaca
     6181 taccttgagc ctttgtcccc tctttggtat gcaccggaac ataagcgcaa aacaaaggag
     6241 cagtgagggt atcactaatg ctgtgtgttt taaagttttt gcttttttcg atcaggcctt
     6301 gagccaaaga ctgggtcagt gtgatactac tgcttggaac aaaactttga ccaaagggca
     6361 agcgaatctt ttcttttaac gcctcattgg ttgccgaaaa acgaccctca acacgtgtgg
     6421 tactatcccc gtggcgcttt atcgaccaat ctaccgaaag cgctccatct ggataatcaa
     6481 tgttttgaac gagcctgctg taaaggacca tatcttgatt tacgacttgg gcagtgtccg
     6541 tttgatcgaa ttcaggccac gccctaaggt gatcaaaaac aactccaggg ggttgcttag
     6601 tggtaaaact caccttgtaa tgatagggaa aaacaaagag ataactcatg aggacaaagg
     6661 ccaaaaagaa aatccccaga ttaaaaagct tttgtttttt agcgcgtttc atgcttgaac
     6721 ttttgattag tttttaattg aaaaaagaga ttcggaaagt ttgtggccta tagagatccc
     6781 ttgctgtaac cctacctcga tagcggcgcg ataatgaatt cctccgtaca tccttgaaat
     6841 tgctgcttct tgtgctgctt gctcaaaaga cggataggaa cgaacaggca agccataagg
     6901 gacctctgta tcgtcatcaa aggtaaaatc ggggccaaat atttccgtta aaaccgtaga
     6961 tgccgcgcca gacaccacgg aatgtccaga ggtgtactca gggaaaggag gtgtttgtaa
     7021 gaccggtttc cagttctcgt ctatatattg attgattaag gtttcagggc gaattaaatt
     7081 actgcggtat ttttcatccc aacagctaat aaaggcatca aatatggcca acgatgtgta
     7141 ggtataagcc gatactgttt gtcgaaaatc catctgagct ttgttacagg caattttggt
     7201 aatgccaatc caatgggcac caggcgtaat ttttttagta gcaaacataa gatgtccacg
     7261 agtgactgag acataagggt tacaatccca gaattgtgcc atttgtatct cttctgagga
     7321 gtccccttgg gcttctatgc gtttacttgt gtcataaacc tccatgagtt ctttataaaa
     7381 atcgctattt ttttcaagcg aaaacgctgg tggaggtgcc ggtttaaatt gacttgcaga
     7441 gtctaatata aagggccgaa ttttattcca gtggggttca ataccatcca tataggccgg
     7501 gggtgtgggc tgccagcgtg aaggatcttc tgtaatcaca gtaaatttag gcatggtacg
     7561 tgtttggtta tactggtccg tattcatcca cagttttatg tgctgtgcga cagagagacc
     7621 gtactctttg gattgagtaa attcagattt attttgtttt gaccaaaggg cgtataaact
     7681 atcgcggtag tgctccatgc gctcttcaga aaaaactaaa gatttgctca gatccatatg
     7741 cgcgatgagt gcagctaacg ctaaattaac cgtactgtcc tttgctaatg gtattggttt
     7801 aaggtgatca atagactggg tcaacgagcg catgcctgga tcggattgag ctaaaatttc
     7861 ataggctgcg atattagggt aggcgtaaat tctactggct acgggtggcg aaaatatatc
     7921 atggaccatg atcctggtca cttggtctac actgctttga aagtccgctg agcgaaccac
     7981 tataggttgg tctggagtgc aactgctcag tgcgccaatg gcgaccacta aactcatttt
     8041 tttaaaattc aatgcggtaa atttcagttg tttcatcatt aaaaattaca attaaatagg
     8101 tttggttgtt tcggctaatt aaatcaaaat gccgtaccga tttattccac agatctaatc
     8161 cataatcggc agaggaatgg atgtttccgt tatgatcaat aacggctcct gaaaaggaat
     8221 caaatcgtcc ttgaaagggg atcaccccaa aataatttcc tcctactaaa atctctgtat
     8281 tttgatcttg attaaaatct gccacgagaa atgtgtttat tggactttgc tggagctggg
     8341 gatcaaagcg cacaaattga tagttaccct cttgattttc aaaatagccg ctggccaatt
     8401 cattcacggt taaaacgtgt acctggtcaa aatcaagacc gcgaattttg gtgagcggtt
     8461 gattagcaaa cgcactgtat tggttatatt gtttgcgtaa aatgaccatt tgagcggcta
     8521 aatcatcgag gccgagcaaa gggtaatcat cgccttgacg atgtgttgtg agtatggttt
     8581 cgctcgcgcc attatgatca aaatcgttat gccagagttt cattgggtgc tccatggacg
     8641 cttgtagttt actgttcaga ccccaattgc ccatgagcag gtccaggtca ccgtcttgat
     8701 caaggtcatg cgcgacaacg cgccgccaaa gcccttttaa atctggaaat acttctatat
     8761 tttcttcaaa tccctcaggg gtttggataa acagtcgggg ggacatccaa tgaccaataa
     8821 ccaacaaatc cataagccca tcttgatcat ggtccatcca caaggcgtcc gttatcattc
     8881 ctaggttatc gatttgtagt attttttggt ggtcccgaaa aatataagag ggaaccgcct
     8941 tgccaaaatc ttgaggccca caaaagttcc cgacaaacaa aaggttttcg tggccccgta
     9001 ccacatgagt attggctaag tctccctcta atggaatccc gacctgattc aattgatcca
     9061 taggccaaac cttgttttca aaaacagagg cggatggtcg gaccgaatta ccaccggcgg
     9121 cgagaaccaa ttgtggtttt ccattggcgt tgtaaaccgt ggcgtcaaca aactcttgta
     9181 gactgtccaa agccatccct aaattaggtt ctttctcaaa cccttcttta ttggcggtgt
     9241 aaacctgggt cctttgattc ttaccgccac tgatcaaaat gtctttgcgc ccatcattgt
     9301 tgaaatcaaa ggataaatag gccggtccgt ggtccgaaac tttataggga ataagttttt
     9361 gatcattaaa atctgagaaa tcgtcttctt tatgggtaaa attaatccct aaatttcctg
     9421 cctcagggac aaagagaaac tcagggggcg gatttttttc agggtgcgcc tcaaggccga
     9481 gggacttttc cgaatatttt aaagtattga atcctggggt taatcctgaa tccacccact
     9541 gttgttggcc attaggccat ataattctta aaccttttat cgattgttta gccggtaggg
     9601 caaaatgaag taaaggttcg gaacacgatt gaaagccacg tacggggtaa acctctctgt
     9661 attgaaatcc ttcctcagta taaaggtagg ccttggtccc aattgcatag gggttcaggg
     9721 gggtgtagga cagactgata ctcagaccag aattctgctg attattaaga ggattaatat
     9781 ccgcgttgtt ttggtctaaa tgctcatgat tttgagattc cgtatcttga ttaatactct
     9841 ggtttacgta caaaccagcg gggccatcgg tattgtttac aacgaggtct aaatctccat
     9901 cgcgatctaa atctcctacg acagaagcgc ctgagagact cagctgggtg ctgccccaag
     9961 ggccgctcac atcgtcaaat ttaactccct tttgacctct ataaaagaaa tttacagctg
    10021 ctccagaggg catcatttca atggctgatt gatcgaccaa tcgactgtca ttgatttgtt
    10081 tatggatctc ttgattcgag atgaatttga tatagtccaa gttatttggg cgtcgcgtga
    10141 tgccattgga aataaataag tccaaatacc cgtccaaatc gtaatcccca aataaagcgc
    10201 tccaactcca atcggtcgcc gcgacaccac tatagagggc cgtttcagta aaatttttcc
    10261 ctttttgatt gataaagagc atgttacgac tgtattgata atgatagcca taagcttggg
    10321 tcctgagttt gagcgtttga accgcatcat ctccttcact ggttttgagg agtgtctcac
    10381 tttgaggaag catgtctaga gagatcaaat ctggccagcc atcattattg atgtcggcca
    10441 catcattgcc cattgaaaag cgcgagatat ggctaaaggc agagcgtaat tgctctgtaa
    10501 aagttccgtc ttggttattg tggtaatagt aatcatcttc gtggaaatca ttgcccacgt
    10561 aaatatcagg ccagccgtct ttatcaaaat cggcaatgct aatcccaagt ccataggcat
    10621 taattccacc taagatcccc gcttgttcgc tgacgtcggt aaaaacattt ccgtcattgc
    10681 gcagcaggcg gtcccccgtt tttggattac gggtatagcg caggtcaaca cggccaaagg
    10741 actcttgcgt atgcaccgca tgatttaata aataaagatc caaatcgcca tcttgatcat
    10801 aatcgagaac tgcggacatt gttccaaaat cttcaaagtc taaaccatat gcttttgacg
    10861 attccgtaaa cgttaaatcg ccattattaa tgtagagttc attgtgtccc gtaaatccat
    10921 taatccccac gacggcgctg atatagaggt cctgaaatcc atcaccattt gcatcaaaaa
    10981 taagacatcc cgtttgccaa tcgcttttgc ccataacacc agccgaatta gtaatgtctt
    11041 caaattttaa atctcctttg ttcaggtaaa gggcatttgg tccttgattg gcggtgaagt
    11101 ataagtcggg aagcccatca ttattgagat cccccatagc gaggccaccg ccattgtaat
    11161 aatagagata atcgaggata cttagactgt cggttggcgt caaagtattt ttaaatttga
    11221 gccccgtggt ttcagaatct ggcgaaatga atagcgttga ttcttttttt gagcagccta
    11281 agaccccaaa aatgagaata aaaattgtcc aatatgtgtt gcgggtaaca cgcatcaagg
    11341 ggatcattta agggagttga tatactaaag gtttttgatc gtttagggcg acaaaaatat
    11401 aggtcttccc cagggcatca ttaaagggtt ggatgtgctt gatttcctca cgtacgtaaa
    11461 agccactctc tttgtagttt tgccaatcga agttttgccc cccatcgttg agaagcacat
    11521 tcccgaaatc tgagtctagt cttgaaaatt gaggtctaaa tt
//
LOCUS       DPUP01000128            2538 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2817,
            whole genome shotgun sequence.
ACCESSION   DPUP01000128 DPUP01000000
VERSION     DPUP01000128.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..515)
                     /locus_tag="DHV98_04510"
     CDS             complement(<1..515)
                     /locus_tag="DHV98_04510"
                     /inference="COORDINATES: protein motif:HMM:PF05724.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK05619.1"
                     /translation="MPLDASYWEQRYCAQDTGWDLGRISTPLKTYVDGLTDVDQKILI
                     PGAGNGHEAIYLHNKGFRQVYVLDWSSSALSNIQQECLNFPKEHLICSDFFEHQQQYD
                     LILEQTFFCALTPDLRPQYAAHMAALLKPKGRLVGLLFDAPLNKDVPPFGGTKHEYLD
                     YFRPYFALDTF"
     gene            complement(519..869)
                     /locus_tag="DHV98_04515"
     CDS             complement(519..869)
                     /locus_tag="DHV98_04515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013307616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCK05620.1"
                     /translation="MSFFSSFYTTTAQNSVAISVLNKNQFAEAIQGKEVILVDVRTPE
                     EYAEGFIEGAINIDYFDQQSFIKQISELDKKEPVYLYCRSGNRSMKAARQLVTLGFEK
                     VYDLAGGYMSWSSY"
     gene            complement(973..>1821)
                     /locus_tag="DHV98_04520"
     CDS             complement(973..>1821)
                     /locus_tag="DHV98_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCK05621.1"
                     /translation="CGKNMMKETVDTLGNQKKMNYALRANMTREEFIQEVTDGLAPPP
                     MYFPLNVKMNKEGYEDIEDVLARGTQLLSPDGFEVAANETGAIVLDVRHQDDFVKGHI
                     PRSIFIGLDGTFAPWVGALIADVAQPILLVAPEGREEEAVTRLSRVGFDQTLGILNGG
                     FDAWKNAGKEYDSISSVSAQTLAKEYENGSIPVFDVRKSTEYLSEHVDGANNTPLDLL
                     NDHLAEFPQDKPFYVHCAGGYRSIIAASILKSRGIHNLIDVTGGFKAISETTLPKTDY
                     VCPSTL"
     assembly_gap    1822..1905
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1906..2489)
                     /locus_tag="DHV98_04525"
     CDS             complement(<1906..2489)
                     /locus_tag="DHV98_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCK05622.1"
                     /translation="MKIEQIYTGCLAQGAYYIESNGEVAIIDPLREVQPYMDRAAKSG
                     ATIKYVFETHFHADFVSGHVTLSKETGAPIIYGPGAETSFDAIIAEDGQVFTLGDVSI
                     VAMHTPGHTMESTTYLLRDAQGKDHAIFSGDTLFLGDVGRPDLAQKAAHMTQEDLAGL
                     LFDSLREKIMPLSDEVIVYPAHGAGSACGKNMMK"
BASE COUNT          690 a          543 c          526 g          695 t
ORIGIN      
        1 tcaaaagtgt ctagagcgaa ataaggccga aaatagtcca gatattcatg ctttgtgccg
       61 ccaaaaggag gaacatcttt atttaaaggt gcgtcaaaga gcaatccaac taagcgcccc
      121 ttcggcttga gtaaagcggc catatgtgct gcgtactggg gcctcaaatc aggcgttaag
      181 gcgcaaaaaa aggtttgttc taaaatcaga tcgtattgct gctggtgctc aaaaaaatcc
      241 gaacaaataa ggtgctcttt tgggaaattc aggcattctt gctgaatatt ggacaaggca
      301 gaagaggacc aatctaaaac atatacttgg cggaatcctt tattgtgcaa atagatagcc
      361 tcgtgaccat tgccagctcc aggaattagt attttttggt cgacatcagt taagccgtct
      421 acataggttt ttaagggcgt agagatacgc cctaaatccc aacctgtgtc ttgggcgcag
      481 taccgctgtt cccaatagga cgcatctaga ggcacaattt agtagcttga ccaagacata
      541 tacccgccgg ctaagtcata aactttttca aagcccaagg tgacgagttg acgggctgct
      601 ttcatgctgc gatttccgga tcgacagtaa agatagacag gctccttttt atcgagctca
      661 gaaatttgtt tgatgaagct ttgttgatcg aagtagtcga tattaattgc cccttctata
      721 aaaccttcag catattcttc aggagtgcgc acatcaacca agattacttc tttaccctga
      781 atggcttcag caaactgatt tttattaagt acagaaatcg cgactgaatt ctgtgcagtt
      841 gtcgtgtaaa agcttgagaa aaaggacata agtataagga gttttttcaa agttattttt
      901 tgaggactca tcggtaagct cttttaaaaa caccttgccg ttgtgacaag gtgctttcga
      961 aggattatat aattacaaag ttgaaggaca aacgtaatcg gtttttggaa gcgtcgtttc
     1021 agaaatcgct ttgaatccac cggtgacatc aatcaagttg tgaattcctc tactctttag
     1081 aattgacgcg gcgataatac tgcgatatcc gcctgcacaa tgaacgtaaa atggcttgtc
     1141 ttgaggaaat tcggctaaat gatcattgag taaatctaag ggcgtgttgt ttgctccgtc
     1201 tacgtgctca gacaagtatt cagtcgattt acgcacatcg aacacaggga tagagccatt
     1261 ctcatattct tttgccaggg tttgagctga aactgaagag atactgtcgt attcttttcc
     1321 tgcatttttc caagcgtcga atccgccatt taaaatccct agggtttgat caaatccaac
     1381 acgcgataaa cgggtcaccg cttcttcttc gcgtccttct ggcgcaacca gtaggatggg
     1441 ctgagccaca tcggcgatca aggcaccaac ccaaggcgca aaggttccgt caagaccaat
     1501 aaaaattgag cgtggaatat gtccttttac aaaatcatct tggtgtctta catccaaaac
     1561 aatggctccg gtctcattgg ccgcaacttc gaatccgtct gggctcaaaa gttgagttcc
     1621 acgcgccaag acatcttcga tatcttcata gccttcttta ttcattttca cattgagggg
     1681 gaaatacatt ggagggggcg ctaaaccatc ggtaacctct tgaatgaatt cttcacgtgt
     1741 catgttggcg cgtaaagcat aattcatctt tttctgattg cccagggtat ccacagtctc
     1801 tttcatcatg tttttaccac annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntcttt catcatgttt
     1921 ttaccacaag cagaacctgc cccgtgggcg gggtaaacga taacctcatc agataaaggc
     1981 atgatttttt cacgcaagct atcaaacagc agtcccgcaa gatcttcctg agtcatatgg
     2041 gcggcttttt gcgctaaatc tggacgacca acatctccta ggaataaggt gtccccactg
     2101 aaaatagcgt ggtccttacc ttgagcatca cgtaataaat aggtggtact ctccatagta
     2161 tgtcctggag tatgcatggc gacgatactc acatcaccca aagtaaacac ttgaccgtct
     2221 tcggcaataa tggcatcaaa tgaagtctct gcgcctggac cgtaaataat aggggcacca
     2281 gtttctttag aaagggttac gtgaccactc acaaagtctg catgaaaatg ggtttcaaag
     2341 acatatttga tggtggcgcc tgatttagcc gcgcgatcca tataaggttg tacctcacga
     2401 agaggatcaa taatcgcaac ctctccatta ctttcgatgt aataagcgcc ttgcgctaga
     2461 catccagtat aaatttgctc gattttcata aaagatttat tttattttga gcctgttggc
     2521 cctattggcc ctattggc
//
LOCUS       DPUP01000129            3001 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_26928,
            whole genome shotgun sequence.
ACCESSION   DPUP01000129 DPUP01000000
VERSION     DPUP01000129.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            104..>223
                     /locus_tag="DHV98_04530"
     CDS             104..>223
                     /locus_tag="DHV98_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001314614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HCK05623.1"
                     /translation="MCGIVGLFLKDKMLEPQLGAMLTDMLITMTDRGPDSAGIA"
     assembly_gap    224..238
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            307..1203
                     /locus_tag="DHV98_04535"
     CDS             307..1203
                     /locus_tag="DHV98_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007819375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HCK05624.1"
                     /translation="MCGIVGLFLKDKTLEPQLGAMLTDMLITMTDRGPDSAGIAIYGE
                     PQKGMAKLTLQSSKPLEDFNGLQGSIEKAVGSKIKASIKGTHIVIELPLSQLDNARKA
                     VSAFSPTLKVMSAGENIEIFKEIGLPKDVAAMFGISTMGGTHGIGHTRMATESAVTTM
                     GAHPFSTGHDQCLVHNGSLSNHNSVRRDLRRAGMEFETENDTEVAAAFISHKLKEGSS
                     LGDAMNATLTDLDGFFTFVLGTKNGFGVVRDPIACKPAVMAETDKYVAFGSEYRALVN
                     LPDIENARVWEPEPATVYFWER"
     gene            1207..1896
                     /locus_tag="DHV98_04540"
     CDS             1207..1896
                     /locus_tag="DHV98_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008759548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein GlxC"
                     /protein_id="HCK05625.1"
                     /translation="MQSFDLSKDGLRALNSTLHSLRGETNMTEWEVINPKGSHSIAVG
                     VDALIDVTVRGSTGYYCAGMNKQATIRVKGSAGPGVAENMMSGTVIVDGDASQYAGAT
                     GRGGLLVIKGNASSRCGISMKGIEIVVHGNIGHMSAFMAQSGTMIVLGDAGDALGDSL
                     YEARLFVRGSVKSLGADCIEKEMRPEHLELLANLLERGEASHLAKPSEFKRYGSARTL
                     YTFNVDNASAY"
     gene            1904..>3001
                     /locus_tag="DHV98_04545"
     CDS             1904..>3001
                     /locus_tag="DHV98_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_384195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HCK05626.1"
                     /translation="MTDFPHTPPKMSWTFSNEVNAEIRRAAATGIYDIRGGGSKRQLP
                     HFDDLLFLGASISRYPLEGYREKCGTDVWLGTRFAKNPIHLEIPITIAGMSFGALSGP
                     AKEALGRGASEAGTSTTTGDGGMTEEERGHSKTLVYQYLPSRYGMNPDDLRRADAIEV
                     VVGQGAKPGGGGMLLGQKISDRVAMMRNLPKGIDQRSACRHPDWTGPDDLEIKIAELR
                     EITNWEKPIYVKVGAARPYYDTTLAVKAGADVVVLDGMQGGTAATQDVFIEHVGIPTL
                     GALREAVDALKELNMHRKVQLIISGGIRSGADVAKAIAMGADAVSIGSAAMMALNCNA
                     ELYIDDYKKLGTEPGYCHHCHTGKCPVGVATQ"
BASE COUNT          847 a          584 c          766 g          789 t
ORIGIN      
        1 cttatttttt ttcctaatta ttaaaaaagt ttcttgatag ttatgttgag agatgaaata
       61 ttaacgtaag aatagattgc aattaccttg ggagcgcgag tttatgtgtg gaatcgtagg
      121 gcttttttta aaagacaaaa tgctagagcc ccagctgggt gctatgctaa cggacatgtt
      181 gataacgatg acggatcgtg ggcctgatag cgcagggatt gccnnnnnnn nnnnnnnnta
      241 ccattatgtt aagagatgaa atattagtgt aagaatagaa tgcaattacc ttaggagcgc
      301 gcgtttatgt gtggaatagt agggcttttt ctaaaagaca aaacgctaga gcctcagctg
      361 ggtgctatgc tgacggacat gttgataacg atgacggatc gtggacctga tagcgcaggg
      421 attgccatct acggcgaacc ccaaaaaggt atggcaaaat taaccctaca atcatcaaag
      481 ccgttggagg actttaacgg cttacaagga tctattgaga aggccgttgg atcaaaaatc
      541 aaggcttcga ttaagggcac acatattgtt attgaattac cactgtcaca gctcgacaat
      601 gcacgcaaag cagttagtgc tttttctcca actcttaaag tcatgagtgc gggcgaaaat
      661 atcgaaattt tcaaagaaat aggcttacca aaagacgtag cggcaatgtt tggcatttca
      721 acgatgggcg gcacacatgg cattggccat acacgtatgg ccactgaatc tgcagtaaca
      781 acgatgggtg cgcatccgtt ttcaaccgga catgatcagt gcttggttca taatggatct
      841 ttgtctaatc acaattccgt tcgccgggat ttacgccgtg cgggtatgga gtttgaaact
      901 gaaaatgata ccgaggttgc tgcagcattt attagtcata agctgaagga aggctcaagt
      961 cttggagatg cgatgaatgc gactctaaca gacttagacg gatttttcac tttcgttctt
     1021 ggcactaaga atggctttgg tgttgtgcgc gatcctatcg cttgcaagcc agcggttatg
     1081 gccgaaacag ataagtatgt tgcttttggt tcagaatatc gcgccttagt taatttgcct
     1141 gacattgaaa atgcccgagt ttgggaacct gaaccagcaa ccgtatattt ctgggagcgt
     1201 taattaatgc aaagctttga cctttcaaaa gatggactac gtgctctgaa ctcaacactg
     1261 cactcactgc gcggcgaaac aaacatgact gagtgggaag tgataaaccc caagggttca
     1321 cattcgattg cagtgggtgt tgatgcttta atcgacgtca ctgtgcgtgg ctctactggc
     1381 tactattgtg ctggcatgaa caagcaagca accatccgag ttaagggatc tgccggtcct
     1441 ggtgttgctg aaaatatgat gtcgggaact gtgatcgtcg atggcgacgc tagccaatat
     1501 gctggcgcca cggggcgggg tggactttta gtgattaaag gcaatgcaag ttctcgctgt
     1561 ggaatctcga tgaagggaat agaaatcgtt gtacatggca acataggcca tatgtcagcc
     1621 ttcatggcac aatcaggcac tatgatagtg ctgggcgatg ccggtgacgc actgggtgac
     1681 agcctttatg aggcacgttt atttgtgcgc ggttccgtta agtccttagg tgcagattgt
     1741 attgaaaaag agatgcgccc tgagcacctt gagttattgg caaacctttt agaacgcggc
     1801 gaagccagcc atttagcaaa gccctctgaa tttaagcgat acggatcggc tagaacgctt
     1861 tacacattta atgtcgacaa cgcgtcggca tattgaggtt aacatgacag attttccaca
     1921 cacacctcca aaaatgtcct ggacgttttc aaacgaagtt aatgccgaaa tcaggcgtgc
     1981 ggcggcaaca gggatctatg atatacgcgg tggtggctcc aaacggcagc ttcctcactt
     2041 cgatgatctt ttatttcttg gcgcatcgat cagccgttat cctttagaag gttaccgaga
     2101 aaaatgtggg accgacgtat ggctcggaac acgatttgcc aaaaacccta ttcatttaga
     2161 aatacctatc accatcgcag gtatgagctt tggagcttta tccggtcctg caaaggaagc
     2221 gttggggcgt ggtgcgagcg aggctggtac ttctacgaca acaggcgacg gtgggatgac
     2281 cgaagaagaa cgtggacatt ctaaaacatt agtctatcaa tatttgcctt cacgatacgg
     2341 tatgaatcct gatgacttgc gccgcgctga tgctattgaa gtagtggtgg ggcaaggagc
     2401 caaaccaggc ggcggcggca tgttgcttgg acaaaaaatc tcggatcgtg tagcaatgat
     2461 gcgcaatttg ccaaagggaa ttgaccagcg ctcagcttgt aggcaccccg attggacagg
     2521 tcccgacgat ctagagatta agattgcaga gttacgcgaa attaccaatt gggaaaaacc
     2581 aatttatgtt aaagttggtg ctgcaagacc ttattacgat acaacgttag cagttaaagc
     2641 tggagcagat gtggttgttt tagatggaat gcaaggtgga acagctgcaa cccaagatgt
     2701 ttttattgaa catgtgggta ttccaacttt aggtgcactc agagaagctg tggatgcttt
     2761 aaaagaatta aatatgcata gaaaagttca attaataatt tctggaggta ttagaagtgg
     2821 tgcagatgtt gcaaaagcaa tagcaatggg tgcagatgcg gtatccatag gatcagcagc
     2881 gatgatggct ttaaattgta atgcagaact ttatatagat gactataaaa aactgggaac
     2941 tgaacctgga tattgtcatc attgtcatac tggaaaatgt cctgttggag tagcaacaca
     3001 a
//
LOCUS       DPUP01000130            5532 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_730,
            whole genome shotgun sequence.
ACCESSION   DPUP01000130 DPUP01000000
VERSION     DPUP01000130.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5532)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5532)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5532
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(142..897)
                     /locus_tag="DHV98_04550"
     CDS             complement(142..897)
                     /locus_tag="DHV98_04550"
                     /inference="COORDINATES: protein motif:HMM:PF13568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05627.1"
                     /translation="MNGVGFSIKDLRRTINSVVLVRFIISVFCLTPWTLIAQETSVFE
                     TIEDEFYREDQFYLALSYNLLSDVPQEVATRGLIGGIHFGFIRDWPVTPKGNWALGTG
                     IGLGYDRYGQNIIAQSSQEGLPTWTIEQSPSAIEVNSLQLTTVEFPLEIRWRTSEAQS
                     YKFWRLYAGVKWSQHLVSKTVFKGPEASETLTELSQLRKGIWYATLSFGYGIFNAQVQ
                     WGLNPLLLDVEDRVSQQSIGLRPIKLGIMFYIL"
     gene            complement(964..1437)
                     /locus_tag="DHV98_04555"
     CDS             complement(964..1437)
                     /locus_tag="DHV98_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HCK05628.1"
                     /translation="MSKFKKKKSGDLPAISTASLPDIVFMLLFFFMVVTVLRDSNLLV
                     MQRLPKGDQVEKLQKDRSVFIFAGKPGPGYEKYGKEAKIQIGDKYMDVGNIKFALEEY
                     RRKLRPELQDKIMIALKVDGETNTGLVSDIKQELREQNLLKLIYITTPGNALESY"
     gene            complement(1449..2072)
                     /locus_tag="DHV98_04560"
     CDS             complement(1449..2072)
                     /locus_tag="DHV98_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HCK05629.1"
                     /translation="MGRRATPEVNAGSMADIAFLLLIFFLVTTTIEKDKGIARQLPPP
                     IEEELDVVIKQKNLFIVNVNKSDQLLVEDELMELKDLRQAAIDFLDNGGAPAGSPEYC
                     NYCKGKRSAESSDNPQKAVIAVQNDRLTSYEMYISVQNELVAAYNTLRNRESQRLFGW
                     DYTEMKKGIDEGQITGEREDLIQEQLKEVQELIPLKLSEAEPRKSGK"
     gene            complement(2074..>2360)
                     /locus_tag="DHV98_04565"
     CDS             complement(2074..>2360)
                     /locus_tag="DHV98_04565"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05630.1"
                     /translation="MAIVVLMVLIFVVSGVLAGNVKKTLMSVGAFLSVVLISYAMASG
                     STEGLPLVDNKVVSEGTSRLVGTGLIAFYILAVAAIVSMVFSGVKKVTTK"
     assembly_gap    2361..2448
                     /estimated_length=88
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2630..3427)
                     /locus_tag="DHV98_04570"
     CDS             complement(2630..3427)
                     /locus_tag="DHV98_04570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotA"
                     /protein_id="HCK05631.1"
                     /translation="MKKLFSILAIAALVFVGSNNVQAAPAKALSTNVSMISTTAGTLL
                     AQDEAAPAQSESFHQELKQRFIEGGPGFMGIVLLCLILGLAIAIERIIYLNLSTTNTA
                     KLASSVEEALKSGGVSAAKEVCRDTKGPVASIYYQGLDRADESVEAAEKAVVAYGGVQ
                     MGQLEKNVSWISLFIALAPMLGFMGTVIGMIQAFDKIQAAGDMNPSLVAGGIKVALLT
                     TVFGLIVAIILQIFYNYIVAKIDSIVNNMEDASITLIDMLVAYKNKK"
     gene            3679..4305
                     /locus_tag="DHV98_04575"
     CDS             3679..4305
                     /locus_tag="DHV98_04575"
                     /inference="COORDINATES: protein motif:HMM:PF00730.23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05632.1"
                     /translation="MCPSKFQNALQALKRDPIMAFLAHKFAHEITLSDRYESDHAKAL
                     ALLVVEQQVSFKAALTIKQRFLKIIDRLSYSEILALDNDLIQSAGLSKRKVDYIKNIY
                     QHFLDEPKNYEVMDYDQIHNALIQIKGVGRWTIEMFLIFVLGAQDIFSKGDLALINSI
                     KRNYNLDPLTDLHLNQLIEQWRPYNTVASLLLWRSVEQKIYYTPEAED"
     gene            complement(4356..4529)
                     /locus_tag="DHV98_04580"
     CDS             complement(4356..4529)
                     /locus_tag="DHV98_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008866371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein"
                     /protein_id="HCK05633.1"
                     /translation="MLNQRNDRKALNKLKYFGLSISVFALLFKLLSWQFAEVLLIAGL
                     GSLGVYFLAKIFN"
     assembly_gap    4605..4709
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4796..>5532)
                     /locus_tag="DHV98_04585"
     CDS             complement(4796..>5532)
                     /locus_tag="DHV98_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010249899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-asparaginase 1"
                     /protein_id="HCK05634.1"
                     /translation="SALSFMLQGLNKPVILTGSQLPIGDLRTDAKENLITAIQLAAMA
                     QDLEPQIQEVCIYFEYKLYRGNRTTKINAEHFQAFASFNHPPLAESGVHLTLAKDLLW
                     RSPHKTLKVHYQMNRSVILIKIFPGLTADLLKYMLNAPGIEGVVIETFGSGNLPNIPE
                     FLEALQEIIVKGIPVVNVTQCSGGSVEQGLYETSQGLKAMGVISGSDMTTESALAKLM
                     YLISFDQGSDYVRAQFSRSLAGEITL"
BASE COUNT         1584 a         1240 c         1045 g         1470 t
ORIGIN      
        1 agaattggtt accggatttg gtgtcggtac tctttcacaa gttttggcct tgagtctagc
       61 cctaaatctc taacaaatag gctctccgca gcgggccttt gacttaaaac gctacggccg
      121 cggggaccct acgcgatacc tttataaaat ataaaacata atccccagct tgatcgggcg
      181 cagaccaatg gactgctggg aaacacgatc ttctacatcg agcaaaagcg gattcagtcc
      241 ccattgaacc tgggcattaa atattccgta accaaaggaa agagtcgcat accaaatacc
      301 cttgcgcaat tgcgacaatt cagtaagggt ttctgaagcc tctggaccct taaaaaccgt
      361 tttagagacc agatgttgac tccacttcac tccggcatac aagcgccaaa atttataact
      421 ttgagcctct gaggttcgcc atcttatttc taatggaaat tccacagtcg tcagttgaag
      481 gctattgacc tcaattgcac ttgggctctg ctctatcgtc catgtgggca gtccttcttg
      541 actggattgc gcaatgatat tttgaccata acggtcatac cccaggccga tccctgttcc
      601 taaagcccaa ttgccttttg gggttacggg ccaatcacga ataaatccaa agtgaattcc
      661 accgataagc ccacgcgtag cgacctcctg gggcacatca gataaaaggt tgtagctcag
      721 ggccaaataa aactgatcct ctcgataaaa ttcgtcttct atagtctcaa agacgcttgt
      781 ctcttgggcg atcaaggtcc aaggcgtcaa gcagaagact gatataataa accttacaag
      841 aacaaccgaa ttaatcgttc gacgaaggtc ctttatgcta aacccgactc cgttcattaa
      901 ttatatgctt tagacaaaaa aagcctcttt acagaggctt tttcattgtt atagactaga
      961 gcactagtaa gattccagtg catttccagg cgtggtaata tagattaatt tcaaaagatt
     1021 ctgctctcgc aattcttgtt tgatgtcaga gaccaaacct gtgtttgttt ctccatcaac
     1081 ctttaaggca atcataatct tgtcctgtaa ttcagggcga agtttacgac ggtattcttc
     1141 tagggcaaac ttaatattcc ccacgtccat atacttgtct ccgatttgga ttttggcttc
     1201 ctttccatac ttctcatatc ccggtcctgg tttaccagca aagatgaata cagaacggtc
     1261 cttttgaagc ttttctacct gatctccttt tggcaaacgc tgcattacga gcaggttact
     1321 gtcacgcaaa acagtgacaa ccataaaaaa gaacaacaac ataaaaacga tatcgggcaa
     1381 agatgccgta gaaatcgcag gtaggtcacc actttttttc ttcttaaatt ttgacatgtc
     1441 ttaaggtttt atttacctga ctttcttggc tcagcctcag aaagcttaag tggaattagc
     1501 tcttgtactt ctttgagttg ctcctgtatt aggtcctcgc gctctccagt aatctggccc
     1561 tcgtcaatac cttttttcat ttccgtataa tcccaaccaa aaaggcgttg agattcacga
     1621 ttacgcaagg tattgtaggc ggctaccaac tcattttgta ccgagatata catttcgtaa
     1681 gaagtcaagc ggtcattttg cacagcgatt actgcctttt gcgggttatc tgaagactca
     1741 gcagagcgct tccccttaca atagttacag tattctggag aaccggcagg agcaccacca
     1801 ttgtcaagaa agtcgatagc tgcttgacgc aagtctttta actccattag ttcatcctcc
     1861 accaacaatt gatcactttt attcacgttt acgataaaca agtttttttg cttgatcaca
     1921 acgtccaatt cttcttcaat agggggtggc aactgacgag caattccctt gtccttctca
     1981 atggtggtcg tcaccaaaaa gaaaatcaac aaaagaaagg caatgtctgc cattgaccca
     2041 gcattcactt ctggtgtggc tcttcttccc atattatttt gtcgttactt ttttaacgcc
     2101 gctaaagacc attgaaacaa tggccgctac agccaagatg taaaaggcaa taagccccgt
     2161 acccactagg cgtgatgtgc cttcagaaac tactttgttg tccacaaggg gcaagccttc
     2221 tgtacttccg gaagccatag cgtaagaaat caatacgacg gataaaaatg ccccaacaga
     2281 cattagcgtc tttttgacat tacccgccaa caccccggat acgacaaata ttagcaccat
     2341 taacactaca atggccataa nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnct acaatggcca
     2461 taatgatgta tccagtatat aacattgggg aaacgccttc gccggtcatt ttcacgtatt
     2521 catcaccttt tgacaccaag aggaaccaga agacaactcc ggcaagccct aaaagcagtg
     2581 cgacgatttt aaaaattttg tgtaaaccca ttttcgctca gcttttagat tattttttgt
     2641 ttttgtaggc aactaacata tcgatcaaag tgattgacgc atcttccatg ttgttcacga
     2701 tgctatcaat ttttgcgacg atatagttgt aaaaaatctg aaggataatc gctacaataa
     2761 gaccaaatac cgtggtcaaa agggctacct taatccctcc agcaacaagt gatgggttca
     2821 tatctcccgc ggcctgaatc ttgtcaaagg cctgaatcat cccgattacc gtacccatga
     2881 acccaagcat aggggccaaa gcgataaaca acgaaatcca agaaacattt ttctcaagtt
     2941 gtcccatttg aacaccaccg taagccacta ccgctttttc agcagcttca acactctcgt
     3001 ctgcacgatc aagaccttga taataaatag aggcaacagg acctttagtg tcgcgacaaa
     3061 cttctttagc cgctgaaaca ccaccactct ttaaggcttc ttcaacacta gacgctaact
     3121 tagcagtgtt tgtcgttgat aaattgagat agatgatacg ctcgatggca atagccaaac
     3181 ctaggatcaa acacaacaat acgattccca taaatccagg gcctccttcg atgaaacgct
     3241 gcttcaattc ttggtgaaaa ctctctgatt gcgcaggagc tgcctcgtct tgagcaagca
     3301 gagtgcccgc cgttgtgctg atcatagaaa cgttagtaga aagtgctttt gcaggagcag
     3361 cttgcacatt gtttgaaccg acaaatacca aagcggcaat tgcgagaata gaaaatagtt
     3421 ttttcattgc tatcgactta aaagtttgat gattagtttt ttaattttta aggctctaaa
     3481 gatataaaaa tatttagttt ataaacaagg catgatccat ggattttggc tcaaaaccta
     3541 ttcgattcaa gggcccagcg caacagggaa taaatgagaa attaaaaatt taaccctaac
     3601 ttaacccaag ctttaatatt caggtcggct cttttgaatt ggcataagtc acaacaccat
     3661 tctaataaac ctctctttat gtgtccttct aaattccaaa acgcattaca ggccctaaaa
     3721 agggatccga taatggcatt tttagcccat aagtttgcac atgaaataac gctgtccgat
     3781 cgatatgaat cagatcacgc taaagcactt gccctactgg ttgtggagca gcaagtaagc
     3841 tttaaagccg cattgacaat caaacagcgc tttttgaaga ttatagaccg cttatcttat
     3901 tctgaaattc tggccctgga taacgatttg attcagtctg ccgggctttc caaaagaaag
     3961 gtagactaca tcaaaaatat ctatcaacat tttttggacg agcccaaaaa ttatgaggtc
     4021 atggattacg accaaatcca taatgcactc atccaaataa aaggagttgg gcgctggact
     4081 atcgaaatgt ttttgatttt cgtgctcggg gctcaagaca ttttctccaa aggagattta
     4141 gccctgatta acagcatcaa acgcaattat aatttagacc cgctaaccga tttgcatttg
     4201 aaccaactta ttgagcagtg gcgcccgtac aatacggtgg cctctttgtt gctttggcgt
     4261 agtgtcgaac aaaaaatata ttatactcca gaagctgaag actaatcagg ttataggcag
     4321 ctctcgaggc aaatcaagaa catgacaccc gagtgtcaat taaatatttt ggccaaaaag
     4381 tagacgccaa gagatcccaa gcctgcaatc agcagtacct cggcaaactg ccaagacagc
     4441 agcttgaaca ataaggcaaa aacagaaatg gatagcccaa aatattttag tttatttaaa
     4501 gcttttctgt cattgcgttg atttaaaatc aaaaaaatgt tgcagagagg aagggattcg
     4561 aaccctcgat acgcttttgg cgtatacaca ctttccaggc gtgcnnnnnn nnnnnnnnnn
     4621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnna aaaaaaagga gtaggtcaag cctggagatt
     4741 gaattatgaa caatttagtt tgctccccgt gtgcgaaaaa tcagataccc tcaaattaca
     4801 gggtaatttc accagccaaa gaacggctaa attgtgcgcg aacgtaatca cttccttgat
     4861 caaagctgat taaatacatc aactttgcca gagcagactc agtggtcata tcgcttcctg
     4921 aaataacgcc catggccttg agcccctgag aagtctcgta tagcccctgt tccaccgatc
     4981 ctccggagca ctgggtgacg ttcactacag gaataccttt aacgataatc tcttgcagcg
     5041 cctctaggaa ctccggaata ttgggcaggt taccgctacc aaaagtttca ataaccaccc
     5101 cctctattcc aggagcattg agcatatatt ttaataggtc tgcggtcaaa cctgggaata
     5161 tttttatcaa aatgaccgag cgattcattt gataatgaac cttaagtgtt ttgtgcgggc
     5221 tgcgccataa caaatccttg gccagggtca aatgaacacc gctttcggcc aaaggtggat
     5281 gattaaaaga ggcaaaggct tgaaagtgtt ctgcattgat ttttgtggtg cgattcccac
     5341 gatacagctt gtattcaaaa taaatacaca cctcctgaat ctgaggctca aggtcttgag
     5401 ccatggccgc gagctgtatg gccgtaatta aattctcttt ggcatcggtg cgcaggtcgc
     5461 ctatgggtaa ttgcgagccc gttaagataa ccggcttgtt caggccttga agcataaagc
     5521 ttagggccga ag
//
LOCUS       DPUP01000131            8503 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6046,
            whole genome shotgun sequence.
ACCESSION   DPUP01000131 DPUP01000000
VERSION     DPUP01000131.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8503)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8503)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8503
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            409..987
                     /locus_tag="DHV98_04590"
     CDS             409..987
                     /locus_tag="DHV98_04590"
                     /inference="COORDINATES: protein motif:HMM:PF11138.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05635.1"
                     /translation="MLRTTILAVFCISLTFQSCSSSEKEGKQRDTAITTPDNRENRVS
                     PAETTTADFDGNVVTINYGSPKVKDREIWGALVPYGEVWRTGANEATTITFTKDVLID
                     GQLLKADTYAFFTIPDPEAWTIIFNLEEKQWGAFKYDSTQDALRLQVEPVMQEELTEA
                     LAFTLEKAANGGVIQLRWEKIAIDIPFTTAPE"
     gene            complement(991..1383)
                     /locus_tag="DHV98_04595"
     CDS             complement(991..1383)
                     /locus_tag="DHV98_04595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05636.1"
                     /translation="MLLQVARYMILLLPLMACEEELPAPDQNFNASENKNRTIIAEVR
                     HIYDFPNGLDSMVAGATVLLYSDRDVFATAGIAEKYRTTDSTGKVVIEFLDQSYYWIR
                     TVHPDLGEVLDSVSTPEYTSSFVFIDYL"
     gene            complement(1386..2003)
                     /locus_tag="DHV98_04600"
     CDS             complement(1386..2003)
                     /locus_tag="DHV98_04600"
                     /inference="COORDINATES: protein motif:HMM:PF06206.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05637.1"
                     /translation="MKKILLISVLLASFQAFGQRPSEEYVRLCMWMTGFFNSALQAEQ
                     DTNYYDISLHMERIWPARKDGYWLYVEQAVTAAADRPYRQRIYKVVDLKDGTFESIVY
                     EMENPLQYTGAWKNTALLDSLKEEDLMLREGCSIRLRWNQGGYFEGRTHDKDCSSDLR
                     GASYAVSIVRIYPQLLDSWDRGFNSMDEQVWGAENGPYHFVKQME"
     gene            complement(2000..3544)
                     /locus_tag="DHV98_04605"
     CDS             complement(2000..3544)
                     /locus_tag="DHV98_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HCK05638.1"
                     /translation="MSQQEDLFKKVVAHAKEYGFIFASSEIYDGLSAVYDYGQNGSAL
                     KNNLRQYWWRSMVQLHQNIVGVDAAILMHPTTWKASGHVDAFNDPLIDNKDSKKRYRA
                     DVLIEDYAEKLEQKAQKEIAKAQKRFGESFDLAQFEATNERVLRYREQQKTILSRMAQ
                     SLENEDLADVKALIDELEIADPDTGSKNWTDVRQFNLMFGTKLGASADSAMDLYLRPE
                     TAQGIFVNYLNVQKSGRMKIPFGIAQTGKAFRNEIVARQFIFRMREFEQMEMQFFVRP
                     GQEMQWYEYWKAHRMQWHKALGTGDDMLKFKDHENLAHYANAAVDIEFNFPFGFKELE
                     GIHSRTDFDLKRHQEFSGKKLQFFDPELEKSYVPYVVETSIGLDRMFLAMMCLAYDEE
                     SVQDDTRTVLKLPPALAPVKVAVLPLVKKDGLPEQAMAIFNKLKYRFHCQYDEKDSIG
                     KRYRRQDAIGTPFCITIDHQTAEDGKVTMRNRDTMEQDRVAIEQLEQLVADKVSMHDL
                     LEKVEI"
     gene            complement(3604..>3855)
                     /locus_tag="DHV98_04610"
     CDS             complement(3604..>3855)
                     /locus_tag="DHV98_04610"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05639.1"
                     /translation="PGERNLYLQVINPKNNLIGSRMTLEQGQERLYYSATTQVDFQQE
                     EVDVCIMVGAQEEDLVSGRYILNLYQDSTRLATTTMLLK"
     assembly_gap    3856..3971
                     /estimated_length=116
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3972..4661)
                     /locus_tag="DHV98_04615"
     CDS             complement(<3972..4661)
                     /locus_tag="DHV98_04615"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05640.1"
                     /translation="MGNKIFSIPLITSNNHVKYGQNHFAKIIFKNGLKGVFMNNDNQT
                     KNFKRIIIILVLLLFGLGAYTLILFQESQANQKDLQEQKMAIAQELGDLKGTYDALLK
                     DYQLQDQELIEARSRIAQLLDSVESAKPSMAIIKRYRIEIARLKEERTMLFARADSLI
                     QVTQSLSFKVDSTLVVLDQTRLEREGLRQKNDDLERVLEKGSRLQIIDFSSNAVIVRR
                     SGKIVDTKRASR"
     gene            4639..5367
                     /locus_tag="DHV98_04620"
     CDS             4639..5367
                     /locus_tag="DHV98_04620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCK05641.1"
                     /translation="MLNILFPKYCPGCRTVLDQPDILLCIACRNALPLTHYHRDQNER
                     FVHKFYGRLPLVQGTALLHYHKKGGAQKLIHALKYRGRKDIGHWLGSWLGAELGQIQS
                     YQDFSAVVPVPIHPQKLRLRGYNQAAIFGRALAESLDIPCLETLLIQTQMRQTQAKQG
                     RWERWSKQDSFALNPKYQMLMTSVFTGLDYEYHDHNPAFQPCKMSLLLVDDVITTGAT
                     IEACGSILTRELGASLSCASIAIA"
     gene            5392..7023
                     /locus_tag="DHV98_04625"
     CDS             5392..7023
                     /locus_tag="DHV98_04625"
                     /inference="COORDINATES: protein motif:HMM:PF13205.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05642.1"
                     /translation="MNSLIRPIFFAFTGMIILAGCAKKGSPTGGPKDSLAPVAKTFFP
                     DNYSVNFKGQRIEIDFDEFIKLKKVKEELLVSPPLNYDPILSPQTSSKTLKITFIDTL
                     QEETTYVLHFGNSIVDNNEENVLPQFKYVFSTGTYLDSLSLTGQVRSANKPELDGPVT
                     VMLYPAEQMTDSTIYSIKPRYVATARSSDGAFSLTNLKEGQYYVLALKEEQKNYTFQT
                     QTDQIAFKLEPINLPGDSIRPLYLFSQEPEFAWTRGAHAGKNRIVFGYNGQRKNRRVT
                     PLFSTASDFRYTWTEAQKIDSLNFWFTPAFDLDAQDTLWFAAETDFGRDSLAIRLKDL
                     YQDSLKVNPITRGVFSPKDSIRFSANTPIWQIDPEKIQIIDKDSTIIPVETRLDSLRN
                     TVTLAIEIKDDNRYQVDLFPEAFQDFFAQTHDTLSYTFKTKPLSDYGTIKLNFSGQTN
                     CPILIELVDTKQNPVAEAWRQEADGASVYFDYIDPDKYRVRITLDCNENALWDTGDYD
                     KKIQPEAVHYLPGLLDIRANWSLNEQYDLNQLDQE"
     gene            complement(7137..7883)
                     /locus_tag="DHV98_04630"
     CDS             complement(7137..7883)
                     /locus_tag="DHV98_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HCK05643.1"
                     /translation="MKLTLKIWRQKNAQDKGRMVTYPIEGIDGDMSFLEMLDVLNNDL
                     ISRGDEPVVFDHDCREGICGSCSLQINGEPHGPDRMITTCQLHMRKFNDGDTIVIEPF
                     RAKAFPVIKDLMVDRSAFDRIQQAGGFISVNTSGNTIDANAIPIPKPDADGAFNAAAC
                     IGCGACVAACKNASAMLFTSAKVSQYALLPQGRVEATQRVLNMVEQMDKEGFGNCTNT
                     GACEIECPKGISLENIARLNRELLSAQLKG"
     gene            complement(7887..>8216)
                     /locus_tag="DHV98_04635"
     CDS             complement(7887..>8216)
                     /locus_tag="DHV98_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017497709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HCK05644.1"
                     /translation="IKALREQFWSEVRVPGAANELNQELEKAMRVADFLELGELFAKD
                     ALHRNESCGGHFREEYQTPEGEALRDDKNFMYVAAWEYKGEPADAVLHKEPLAYENIQ
                     VKTRSYK"
     assembly_gap    8217..8323
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8324..>8503)
                     /locus_tag="DHV98_04640"
     CDS             complement(<8324..>8503)
                     /locus_tag="DHV98_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05645.1"
                     /translation="PEFEAAEKQVQATIDKLLSSKGEKPVDYFHKRLGKIMWNKCGMS
                     RNEKELKEAIAEIKEL"
BASE COUNT         2208 a         2013 c         1749 g         2310 t
ORIGIN      
        1 gacgcttaaa atggacctgg aaaagaaaat ggaggaatgg gcgcaggtta gcgcagagct
       61 ggaaaaaatg caggcatgaa caagggcgac tgggtacagc tgggcgcact attgctggta
      121 tcggtgttac taattgcact gatttattgc tggatcaagg ggccgtacag cctggccatt
      181 gtactgacca ttatctgcct ggcagcagca ttttatgtaa ccagaaaaat ccggttattc
      241 tagccacttt ttgaccaggt taatggctac tacaataatg atagccacca gaccaaacaa
      301 catcaattgc tttggacttt gctgattaaa ggtggtttcc tcctcttcac ctggcttttg
      361 cttaccgaat aacatgcaaa ttgtaccttt gcagtcaaag ataacacaat gcttcgtaca
      421 actattttag ccgttttttg tatttccctg actttccaat cctgcagcag cagcgaaaag
      481 gaaggtaaac agcgcgatac tgccatcact acacctgaca atcgcgaaaa ccgcgtgagc
      541 ccggcagaaa ctacaactgc tgactttgac ggcaatgtag taaccatcaa ctacggttca
      601 cccaaagtca aagaccggga aatctgggga gccctggtgc cttatggtga agtatggaga
      661 accggtgcca atgaagctac aacgataaca ttcaccaagg atgttcttat tgatggacaa
      721 ttgctaaaag cggacaccta cgctttcttc accattcccg atccggaggc gtggaccatc
      781 atattcaatc tggaagaaaa gcaatggggc gccttcaagt acgacagcac gcaggatgcc
      841 ctccgcttgc aggttgagcc tgtgatgcag gaagagttga cggaagcgtt ggcatttacg
      901 ctcgaaaaag ctgccaatgg aggtgttatt cagcttcgct gggaaaaaat agctatcgac
      961 attccgttta ccaccgcgcc ggaatagtgg ctacaagtag tcgataaata caaaagagga
     1021 agtatactca ggtgtactta ctgaatccag cacttcccca aggtcagggt gtacggttct
     1081 aatccaataa taggattggt ccagaaactc tatgactacc tttcctgtag aatcagttgt
     1141 acggtatttt tcagcgattc ctgctgtagc aaaaacatcc ctgtcgctgt acagcagaac
     1201 tgtagcacct gctaccatgc tgtcgagacc gttcggaaag tcgtagatgt gccgcacctc
     1261 tgcgatgatg gtccggtttt tattttcaga agcattaaaa ttctggtcag gagcaggcag
     1321 ttcttcctca catgccataa gcggtagcag cagaatcata taacgggcaa cctgcagcaa
     1381 catatttact ccatttgttt tacaaagtgg tatggaccgt tctcggcacc ccaaacctgc
     1441 tcgtccatac tgttaaagcc tctgtcccag gagtcgagta gctgaggata aatgcgcaca
     1501 atgctcactg catagctggc accccgcaaa tcactggaac aatctttatc atgtgtacgt
     1561 ccttcaaagt accctccttg gttccatctc aagcgaatgc tgcaaccctc tcttagcatc
     1621 aaatcttctt ccttcaggct gtcgagcagg gcagtgtttt tccatgcacc cgtatactgt
     1681 aaaggattct ccatctcgta tacaatactt tcaaaggtac catccttaag gtccactact
     1741 ttgtaaatcc gttggcggta aggacggtct gcggcggcgg ttacagcctg ttccacatac
     1801 aaccaatagc catccttccg ggcaggccat atgcgttcca tgtgcaatga aatatcgtag
     1861 tagttggtat cctgttcagc ctgcaatgca ctgttaaaga aaccggtcat ccacatacac
     1921 aagcggacgt attcctctga agggcgctgg ccaaatgcct gaaaggaagc caacagaacg
     1981 gaaatcaaaa gtattttttt catatttcta ctttttccaa taaatcgtgc atgcttacct
     2041 tgtctgcaac caactgctcg agttgctcta ttgccacgcg gtcctgctcc atggtatcgc
     2101 ggttgcgcat ggttacctta ccatcttcgg cagtctgatg gtcgatagta atacagaaag
     2161 gtgtacctat cgcatcctgc cggcggtagc gtttacctat agaatccttt tcatcatact
     2221 gacaatggaa cctgtatttc agtttattga agatggccat cgcctgttcc ggcaggccat
     2281 cctttttgac caagggcagc actgccactt taaccggtgc taatgcggga ggtaatttca
     2341 atactgtccg cgtatcgtcc tgcactgatt cttcgtcgta agcgagacac atcatagcga
     2401 ggaacatgcg gtccagaccg atggatgttt ccaccacata aggcacatag cttttttcca
     2461 gttcggggtc gaagaactgc aatttcttac cggaaaattc ctggtgtcgt ttcagatcga
     2521 aatcggtgcg ggaatgaata ccttccagct ccttgaatcc gaacggaaag ttaaactcta
     2581 tatcgactgc tgcgttggca taatgtgcca aattttcgtg gtctttgaac ttcagcatat
     2641 cgtctcctgt tcccagggct ttatgccatt gcatgcggtg tgctttccag tactcatacc
     2701 attgcatttc ttgacctgga cggacgaaaa actgcatttc catctgctca aattcgcgca
     2761 ttcggaaaat aaattgacgg gccacgattt cattgcgaaa ggcttttcct gtttgggcaa
     2821 ttccgaacgg tattttcata cggcccgatt tttggacatt gaggtagttc acaaaaatac
     2881 cttgggcggt ttctggtctt aaataaagat ccatggccga atcggcgctg gctcctagct
     2941 tagtcccaaa cattaaatta aactggcgca catcggtcca gttcttggag cccgtatcgg
     3001 gatcagcaat ctccaactca tcaatcaaag ccttgacatc ggccaaatcc tcattttcta
     3061 aagattgagc catacgagac aaaatcgtct tttgctgttc tctgtatcga agcacgcgtt
     3121 cattagtcgc ctcaaattga gccagatcaa agctttcgcc aaatcgcttt tgggccttag
     3181 caatttcttt ttgggctttc tgctcaagtt tttcagcata atcctcaatc aagacatcag
     3241 cacgataacg ctttttagag tctttgttgt caattaaggg gtcgttaaag gcatctacgt
     3301 gccctgaagc cttccaggtc gtggggtgca tcaatatagc cgcatcaaca ccaacgatat
     3361 tttgatgtaa ctgaaccata ctgcgccacc agtactgacg tagattattt tttaaggctg
     3421 aaccattttg accgtaatca taaacagcac ttaacccatc gtaaatttcg cttgacgcaa
     3481 atataaagcc gtactccttg gcgtgagcga ctactttttt gaacaaatcc tcttgttgtg
     3541 acatggcgca aaaatataaa acatgcggca attcagtcct ggtcgaggct attttttaaa
     3601 gacttattta aggagcatgg ttgtggtggc cagacgcgta ctgtcctggt aaagattcag
     3661 gatatagcgc ccagaaacta aatcctcttc ctgtgcccca accatgatac aaacgtccac
     3721 ttcttcttgt tgaaaatcca cttgggttgt cgcactgtaa tacaagcgct cttggccttg
     3781 ctccagagtc attctgctgc cgattaaatt gtttttcgga ttgattacct gaagataaag
     3841 atttcgctct ccgggnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nccgactggc gcgcttggtg tcaactattt tgccactgcg tcgcactata
     4021 actgcgttac ttgaaaaatc aattatttga agccgtgagc ccttctctaa aacacgttct
     4081 aaatcgtcat ttttttgacg taagccctca cgctccaaac gggtttgatc caaaacaacc
     4141 aaggtgctgt ctaccttgaa tgaaagactt tgagtgactt gaatcaaact gtctgcgcgg
     4201 gcaaaaagca tggtgcgctc ctctttaagt cgggcgattt caatgcggta tcgttttatg
     4261 atggccatac tgggctttgc cgactcaacg gaatcgagta attgagctat tctgcttcgg
     4321 gcctcgataa gctcttggtc ttggagctga tagtctttta ataaagcatc ataagttcct
     4381 tttaaatcac ccagctcctg agcaatcgcc attttttgtt cctgtaagtc cttttgattt
     4441 gcctgacttt cctgaaacaa aataagggta tacgcgccta ggccaaacaa aagtaggacc
     4501 aaaataatta tgattcgctt aaaatttttt gtctgattgt cgttattcat aaagactccc
     4561 tttaacccat ttttgaaaat aatcttggca aaatggtttt gtccgtattt gacgtgatta
     4621 tttgatgtga ttaaaggtat gctaaatatt ttatttccca agtattgccc tggctgtaga
     4681 acggttttgg accaaccgga tattctgctg tgtatcgcct gtcgcaatgc gctgcccttg
     4741 acccattatc atcgagacca gaatgaacgt tttgttcata aattctacgg ccggttacct
     4801 cttgttcagg ggacagcgct gttgcattat cataaaaaag gaggggcaca gaaattaatt
     4861 catgcgctga aatatcgcgg acgaaaagac atcggccatt ggttggggtc atggcttgga
     4921 gcagaactcg gacaaatcca gagctatcag gatttttccg cggtagttcc tgtgcccata
     4981 catccgcaaa aattacgcct gcggggctat aatcaagcgg cgatttttgg tagggcactg
     5041 gccgaatctt tagacatacc ctgccttgaa accctcctta ttcaaacgca aatgcgccaa
     5101 acacaagcca agcaaggacg atgggagcgt tggtcaaaac aggacagttt tgccctaaat
     5161 cctaaatatc aaatgctgat gacctctgta ttcactggac ttgactatga atatcacgat
     5221 cacaatcccg cttttcagcc ctgtaaaatg agcctcctcc tggtcgatga tgtcattact
     5281 acgggcgcca cgatcgaggc ttgtgggtcg atcttaactc gtgaactcgg cgcttcacta
     5341 agttgtgcta gcatcgcaat tgcttgagaa agtttactta cttttgacct aatgaactca
     5401 ttaatcagac ccatcttctt tgccttcacg gggatgataa ttttggccgg gtgtgccaaa
     5461 aaaggttccc ctacaggagg acctaaagat agcttggccc cagtggccaa aacttttttt
     5521 cccgacaact attcggtcaa ttttaagggg cagcgcatag aaattgattt tgatgaattc
     5581 attaaactca agaaagtcaa agaggaactc ttggtgtccc cgcccctgaa ctacgatcca
     5641 atcttgagcc cacaaacctc ttcgaaaaca cttaaaatca cctttattga cacgcttcaa
     5701 gaagagacca cctatgtttt gcattttggc aacagtatcg tagacaacaa tgaagaaaac
     5761 gtactgcccc aatttaaata cgttttttct actggaacgt atttagatag tttgagtttg
     5821 accggtcagg tccgctctgc caataagcct gagcttgatg gcccggtaac cgtcatgctc
     5881 tatccggcag aacaaatgac cgacagcact atttacagta ttaagccccg ttatgtggcc
     5941 actgcacgca gttctgatgg ggcgttctcc ttaactaatt taaaagaagg acaatattat
     6001 gtcctcgccc ttaaggaaga acaaaagaat tacacctttc aaacgcaaac cgatcaaatt
     6061 gcctttaaac ttgagcccat taacttaccc ggggacagta taaggccttt gtacttgttt
     6121 tcacaggaac ccgagtttgc ctggactcga ggagcccatg caggaaaaaa tcgcatcgtt
     6181 tttggctata atggccagcg taaaaaccgc agagttacgc ctttatttag cacggcttct
     6241 gattttcgtt acacgtggac ggaagcgcaa aaaattgatt ccttgaactt ttggtttacc
     6301 cccgcgtttg atcttgacgc tcaagatacg ctttggtttg ccgcagaaac ggactttggc
     6361 cgggatagtt tagccataag actcaaagac ctttaccagg actccctcaa agtaaatccc
     6421 atcacgcggg gcgtgttttc tccaaaagac agcattcgtt tttctgcaaa cacgccgatt
     6481 tggcaaattg acccggaaaa gattcaaata attgacaagg attcaacgat cattcccgtg
     6541 gaaactcgac tcgatagctt gcgcaataca gtgactttgg ccattgaaat taaggacgat
     6601 aatcgctacc aagttgatct attccctgag gcctttcagg actttttcgc ccaaacgcac
     6661 gataccttat cctatacctt taagaccaaa cccctttcgg attacggaac catcaagctt
     6721 aactttagcg gtcaaacgaa ttgtcccatt ttgattgaac tcgtggacac caaacaaaat
     6781 cctgtcgctg aggcttggcg ccaagaagcc gatggggcaa gtgtttattt tgattatatc
     6841 gatcctgaca aataccgggt acgcatcact ttagactgca atgaaaatgc gctttgggat
     6901 accggagatt acgacaaaaa aatacagccc gaagccgtgc attacctccc tgggctgtta
     6961 gacattcgcg caaactggag tttgaacgag cagtacgatt taaatcagtt agatcaagag
     7021 tagccgtttt ggatttttgg atcagaccaa acccaattag atccttctga ccacccctcg
     7081 attaggctta accccgggct taaacgatcc gtcaatttac ccctttaact gcctatttaa
     7141 ccctttagct gcgcgctgag caactcgcgg ttcaatcgag cgatattttc taaagagatt
     7201 ccttttggac actctatttc acaagcgccg gtattggtgc agtttccaaa cccttcttta
     7261 tccatttgtt ccaccatatt taagacgcgc tgagttgcct caacacgacc ctgtggcaac
     7321 aaggcatact ggctgacctt agccgaagta aacagcatcg cactcgcgtt tttacaggcc
     7381 gcaacacaag caccacatcc aatacatgcc gccgcattaa atgcaccgtc cgcatcgggt
     7441 tttggaatgg gaatcgcatt ggcgtctatg gtatttccag aagtattaac cgaaataaat
     7501 ccaccggctt gttgaatacg atcaaaagca cttcggtcga ccataagatc tttaattacg
     7561 ggaaacgctt tggcgcggaa aggctcgata acgatcgtgt ccccatcatt aaacttccgc
     7621 atgtgcaatt gacacgttgt aatcattcga tcaggaccat ggggctctcc attaatttgc
     7681 aaagaacaag atccgcaaat tccctcgcga caatcgtgat caaagactac gggttcatct
     7741 ccacgagaga taagatcatt gttcaaaaca tcgagcatct ccaaaaagga catatcccca
     7801 tcaataccct caattggata agtgaccatg cgacctttat cctgggcatt cttttgtctc
     7861 caaattttca gtgtaagctt catagtctat ttgtatgatc gtgtttttac ttgaatattt
     7921 tcgtacgcca atggctcttt atgaagtacg gcatcggccg gctcaccttt gtactcccag
     7981 gccgctacat acatgaagtt tttatcatca cgcaaggcct ctccttcagg ggtttgatat
     8041 tcctctctaa agtggcctcc gcaggattca ttgcggtgaa gggcatcttt ggcgaacaac
     8101 tctcctaact ctaagaaatc cgcaacgcgc atcgcctttt ccagctcttg gttgagttca
     8161 tttgcagcac ctggcacgcg cacttcactc caaaactgct cgcgaagtgc tttaatnnnn
     8221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnaagttct ttaatttcag
     8341 cgatagcttc tttaagttct ttttcgttac gggacatacc gcacttattc cacatgattt
     8401 tacccaatcg tttgtggaaa taatccacgg gcttctcgcc tttgctcgag agtaacttat
     8461 cgatggtggc ttggacttgt ttttcggccg cttcaaattc tgg
//
LOCUS       DPUP01000132            4317 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7805,
            whole genome shotgun sequence.
ACCESSION   DPUP01000132 DPUP01000000
VERSION     DPUP01000132.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>1025
                     /locus_tag="DHV98_04645"
     CDS             <1..>1025
                     /locus_tag="DHV98_04645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011586743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HCK05646.1"
                     /translation="DVQKIARDVINKIGYTKGAYQFDGNSCGVFSAIHEQSEDINRGV
                     DKANKEDQGAGDQGMMFGYASRETANYMPLGLEIAHKILFELAEMRREGTEISYLRPD
                     SKSQVTIEYNDQNHPQRIDSIVISTQHDDFDTDEDKMLKRIQSDLKTLLIPRVKASMI
                     PEVQELFNDQITYHINPTGKFVIGGPHGDTGLTGRKIIVDTYGGKGAHGGGAFSGKDP
                     SKVDRSAAYATRHIAKNMVAAGACDEILVQVSYAIGVAQPVGLFVNCYGTNHTGLSDG
                     ALAQQLLKMFDMRPAAIEARLKLRQPMYYESAAYGHMGRVSERVTKIFERPDGSKKSV
                     EVELFTW"
     assembly_gap    1026..1106
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1243..>1706)
                     /locus_tag="DHV98_04650"
     CDS             complement(1243..>1706)
                     /locus_tag="DHV98_04650"
                     /inference="COORDINATES: protein motif:HMM:PF08885.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GSCFA domain-containing protein"
                     /protein_id="HCK05647.1"
                     /translation="IIGLMAQYNAEAQLIFSVSPVRHTKDGLVQNSLGKAHLITGLHA
                     ALNQVNKEPSAPKYFPAYELMMDQLRDYRFYKSDLIHPNDQGEEVVWDFFKDHWIDPE
                     LEAVLEQIQSIQQGLAHRPLNPDSQEHRNFVMQLKKRIQNLQRQYPHMTFD"
     assembly_gap    1707..1870
                     /estimated_length=164
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1871..2373)
                     /locus_tag="DHV98_04655"
     CDS             complement(<1871..2373)
                     /locus_tag="DHV98_04655"
                     /inference="COORDINATES: protein motif:HMM:PF08885.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GSCFA domain-containing protein"
                     /protein_id="HCK05648.1"
                     /translation="MNFFTQIEPAPSGILLHTDSRITALGSCFAQVIGQRLAYYKWPV
                     VLNPLGVLFHPLALHDLIKRALLLDEFTENDLFDYKGRYSILALHGQYSSQDPKALLT
                     QANSDLKILRDGLTKATHLLITLGTAWAYQKSENDLLVGNCHKLPGSLFNKKLLCVAE
                     IQEAVAQ"
     gene            complement(2374..>4317)
                     /gene="alaS"
                     /locus_tag="DHV98_04660"
     CDS             complement(2374..>4317)
                     /gene="alaS"
                     /locus_tag="DHV98_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010178856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HCK05649.1"
                     /translation="INKDKRINLPKPSVDTGMGLERIAALLQGTHDNYETDHFKKLIQ
                     SISDIVEKKPDSNNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYVLRRIMRRGMRHS
                     HLLGAKEPVFYNLFKTLQEEMSGNYPELNRAEALIRETLKMEEEKFLVLLDRGIKILN
                     DEILKIKDVLPGEVAFKLYDTYGFPIDLTALILRERGYSLDQSGFDQALQEQKTRSRA
                     ATKIETGDWQVLHESDAQEFLGYDHLSQKVQLTRYRKVENKKDGVRYQLVFDKTPFYP
                     ESGGQVGDKGYLEAENGEVVYIIDTKKENNLIVHITKNLPRHPEELHTAVVDQKQRLR
                     AASNHTATHLLHEALRHVLGAHVAQKGSMVHSGYLRFDFSHFAKLSDEELQQVEDYVN
                     ARIRDGLPLEEFRQMPYDQAIEMGAMALFGEKYEDKVRMIKFGKSLELCGGTHVANTT
                     DVWHFIITGESAVASGIRRIEAITGHAAKAFFEERAAAFKQVQRLLHQAQDPIAAIEK
                     LQHDLSALNKQNQQLIREKANSLGTRFKESAEHVNGVRFIAAMVDLDAAAQKDLAFNL
                     GQNVDDLFLIFGSSHEGKALLTCYISEGLVSRKSLNAGQVVRELGKLIQGGGGGQAFF
                     ATAGGKKPEGLEEALSAARKMIA"
BASE COUNT         1119 a          933 c          866 g         1154 t
ORIGIN      
        1 cgatgttcaa aaaattgcgc gcgatgtgat caataagatt gggtatacca aaggagccta
       61 tcaatttgat ggtaattctt gtggggtgtt ctctgccata cacgaacaaa gtgaagacat
      121 caacagagga gtggataagg ccaataaaga agatcaaggt gctggggatc aggggatgat
      181 gttcggctat gccagcagag agacggccaa ttatatgccc ttaggtctag aaatcgccca
      241 taaaattctt tttgaattag ccgaaatgcg ccgtgagggc acagaaattt catacctgcg
      301 tccagattca aaaagccagg tgaccattga atacaatgac caaaatcacc cacagcgtat
      361 cgacagcatc gtgatctcaa cccagcacga tgattttgat accgatgaag acaaaatgct
      421 gaaacgcata cagtcggacc tcaaaacctt actgattccg cgggtaaaag cctcgatgat
      481 cccagaggtt caagaactct ttaatgatca aatcacctac cacatcaatc ctactggcaa
      541 gtttgtaatc ggtgggccac acggagatac tgggcttaca ggccgtaaga ttattgtaga
      601 cacctatggg ggtaaaggag cccatggcgg gggggccttc tctgggaaag atccaagtaa
      661 ggtcgaccgc tcagcggctt acgccacacg tcatattgcc aaaaatatgg ttgctgcagg
      721 agcctgcgat gaaattctcg ttcaggtgag ttatgctatt ggggtggcac aacccgtggg
      781 actttttgtc aactgctatg ggacgaacca tacgggtctg agtgatggag cactcgcaca
      841 gcagcttctt aaaatgttcg atatgcgccc agcagcgatc gaagcgcgct taaaattacg
      901 ccaaccgatg tactatgaaa gtgccgccta tggccacatg ggacgtgtat cagagcgcgt
      961 gaccaagatc tttgagcgcc ctgacggcag taagaaaagc gtggaagtag agttatttac
     1021 ttgggnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnncgtg gaagtagatt tatttacttg ggaaaaattg
     1141 gattatgtcg acaaaattcg acaagccttt ggactaaaat aatcaataga tcaaggtcaa
     1201 ataaccggcg tttaagcgcc taaagggacc cggcgatctc cattaatcga atgtcatatg
     1261 cggatattgc cgctggagat tttgaattcg cttttttaat tgcatcacga aattacgatg
     1321 ctcctgggaa tcgggattta aaggcctgtg ggccagtcct tgttgtatgc tttgaatctg
     1381 ctctaaaacc gcctcaagtt ctggatcaat ccagtggtct ttaaaaaagt cccacaccac
     1441 ttcttcccct tgatcgttcg ggtggattaa atcgctctta taaaaacgat aatctctgag
     1501 ttgatccatc atcagctcat aagctggaaa atatttcgga gcgcttggtt ctttattcac
     1561 ctggttcagc gcagcatgaa gacctgtaat taaatgggcc ttacctaggc tattttgcac
     1621 cagaccatct ttggtgtgac gcaccggaga aactgaaaaa atgagttgag cctcagcatt
     1681 atattgggcc ataagtccaa taatctnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn atctgggcca ctgcctcctg aatttcagca acacagagta atttcttatt
     1921 aaacaaagac ccaggtagtt tatgacaatt acccaccaat aagtcatttt cacttttttg
     1981 ataagcccaa gcagttccca gggtaatcag cagatgggtc gccttggtca aaccatcccg
     2041 taatattttt aagtcggaat tagcctgcgt taaaagggcc tttgggtctt gacttgaata
     2101 ctgaccatgc agggccaaaa tagagtaccg ccctttataa tcaaagaggt cgttttctgt
     2161 aaactcatca agcaatagtg cccgcttgat cagatcatga agggccagag ggtgaaataa
     2221 aacccccaga gggttaagga ctacaggcca cttataatac gccaatcgct gaccgatgac
     2281 ctgagcaaaa caagacccta aagccgttat tcgggaatcg gtatgaagga gaatcccaga
     2341 aggtgctggt tcgatctggg tgaaaaaatt catttatgcg atcatttttc gcgccgcact
     2401 gagcgcctct tctaatcctt cgggcttctt acctcccgcg gtagcaaaaa acgcctgacc
     2461 gccgcccccg ccttggatga gcttcccgag ttcacgcacc acctggcccg cgttaagtga
     2521 tttacgcgac acaagccctt cggagatata gcaagttaaa agggccttac cctcatgact
     2581 actgccgaag atcaaaaaca aatcatctac attctgaccc aaattaaagg ccaaatcttt
     2641 ttgtgctgca gcatctaaat caaccattgc cgcaataaat cgcaccccgt ttacatgctc
     2701 tgcactttct ttgaatcgcg ttccaagact gttggctttt tcgcgaatga gttgttgatt
     2761 ttgtttattg agtgctgata aatcgtgttg taacttttca atagccgcaa ttggatcctg
     2821 ggcctgatgc aataaccgct gtacctgctt aaaggctgcg gcacgctcct caaaaaacgc
     2881 ttttgcggcg tgacctgtaa tggcctcaat gcgtcggata ccactggcta ccgcggactc
     2941 tccagtaata ataaaatgcc atacatcggt tgtgttggcc acatgggtgc cgccacaaag
     3001 ttcgagtgat ttcccaaact ttatcatgcg caccttatct tcatattttt caccaaaaag
     3061 agccatagca cccatttcaa tagcttgatc atagggcatt tgacgaaatt cttctaaggg
     3121 gagtccatct cgaattcggg cgttgacata atcttccact tgctgtaatt cctcatcact
     3181 gagtttggca aaatggctaa agtcaaaacg cagataacca ctatgcacca tagatccttt
     3241 ttgagccacg tgcgccccca atacatgacg caaggcttca tgcaataagt gggttgcggt
     3301 gtgattcgaa gccgcgcgta ggcgttgttt ttgatccacc accgccgtgt gtaactcttc
     3361 aggatgtcgc ggtaagtttt tggtgatgtg tacgattaaa ttattttctt ttttagtgtc
     3421 aataatgtaa acgacctcgc cattttcagc ttctaaatag cccttatccc ctacttgtcc
     3481 tccgctttct gggtagaatg gcgtcttgtc aaaaaccaat tggtaccgca ctccgtcttt
     3541 cttattttct acttttcggt agcgcgtcaa ttggaccttt tggcttaagt gatcatatcc
     3601 cagaaattct tgcgcatcgc tctcgtgcaa gacctgccaa tctcctgttt caattttagt
     3661 cgctgcccgt gatcgggttt tttgctcttg gagcgcttgg tcaaaaccag attgatccaa
     3721 actgtatcct cgctcgcgca gaatcagggc cgtcaaatca attggaaaac cataagtgtc
     3781 ataaagttta aaagcaactt ctcctggtaa aacatctttt atttttaaaa tttcatcatt
     3841 taaaattttt attcctcgat ctaaaagtac taagaacttt tcctcttcca tttttagagt
     3901 ttctcttatt aatgcctcag cacgatttag ttcaggatag tttcctgaca tttcttcttg
     3961 aagagtttta aataaattat agaaaactgg ttctttagca cccagcaagt gtgagtgtct
     4021 catacctctt ctcataattc ttcgtaagac ataccctctg ccttcatttg acggcagtac
     4081 tccctcagca atcaaaaaag agcttgctct taaatgatct gcgatcactc taaagcttga
     4141 aagattatta gagtctggtt ttttttctac gatatctgaa attgattgaa taagtttttt
     4201 aaaatgatca gtttcatagt tatcatgagt accttgaagt aatgctgcaa ttcgttctaa
     4261 gcccataccg gtatccactg aaggttttgg cagattaatt cttttgtctt tattgat
//
LOCUS       DPUP01000133            2818 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23955,
            whole genome shotgun sequence.
ACCESSION   DPUP01000133 DPUP01000000
VERSION     DPUP01000133.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2818)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2818)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2818
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..208)
                     /locus_tag="DHV98_04665"
     CDS             complement(<1..208)
                     /locus_tag="DHV98_04665"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010232298.1"
                     /note="catalyzes the formation of
                     (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-
                     carboxamido)succinate from
                     5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and
                     L-aspartate in purine biosynthesis; SAICAR synthase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HCK05650.1"
                     /translation="MSQTIIDSNFNFPGQISVYKGKVREVYRLEGDILVMVATDRLSA
                     FDVVMPKGIPYKGQMLNQIATKMMA"
     assembly_gap    328..505
                     /estimated_length=178
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(535..1494)
                     /locus_tag="DHV98_04670"
     CDS             complement(535..1494)
                     /locus_tag="DHV98_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013622757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HCK05651.1"
                     /translation="MNEIILELTDVSARDFFGHQNAHIDLIKKYYPKLKIVARGNRIA
                     AYGDEEILETFDQQMTTLLEQFVKYNSIDENLIERILTSEKGTKFDLDTTSDRILVHG
                     VNGRHIKAQTLNQKKIVSQMSKNDLVFAIGPAGTGKTYTGVALAVKALKEKQVKRIIL
                     TRPAVEAGENLGFLPGDLKEKLDPYMQPLYDALRDMIPAEKLTAHIENGVIQIAPMAF
                     MRGRTLDNAFVILDEAQNTTHAQMKMFLTRMGKHAKFMITGDPGQVDLPRRITSGLKE
                     ALLILKDIKGVGMVYLDDKDVIRHKLVKEVISAYNSIENHHGT"
     gene            1606..2433
                     /locus_tag="DHV98_04675"
     CDS             1606..2433
                     /locus_tag="DHV98_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05652.1"
                     /translation="MPIITLTTDFGEKDPYVGAVKGAMYSALDNVRIVDISHGISPFH
                     IVEAAYVIQNAYRSFPKGSIHIIGVDGELTPENRHIGVKLDGHYFICANNGILALLSS
                     SIKPEKIVEINIHGHMESNFPVLDVFVAAACHIPRGGTLDVIGKSISALKELKGIQPV
                     VNLERNQIIGTVIYIDNYGNVVINIQRQLFQEVAKGRQPVIAVRKFRIKNIYERYSDA
                     INFDVPKDRREEAGKELAIWNSSGFLELAIYKSNPTSVGSASSLFGLEYRDSITVSF"
     gene            2439..>2818
                     /locus_tag="DHV98_04680"
     CDS             2439..>2818
                     /locus_tag="DHV98_04680"
                     /inference="COORDINATES: protein motif:HMM:PF12730.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility-associated ABC transporter
                     permease subunit GldF"
                     /protein_id="HCK05653.1"
                     /translation="MNPIIKQTFSSFFAQAAALLLMGVFVLGVGVYFWVLPGDQNLFD
                     AGFGDLTQVFRVLPWGVLLVVSALSMRLFSPERQSGTLALLLTRPVSLWSVVLGKYLG
                     AMGVLGLLLLSTLCYPLTLEYLITG"
BASE COUNT          640 a          562 c          607 g          831 t
ORIGIN      
        1 cggccatcat ttttgtggcg atttggttga gcatctggcc tttgtaagga atccccttag
       61 gcatgaccac atcaaaggcg ctcaaacggt ctgtggccac catcaccagt atatcccctt
      121 ctaaacggta tacttcacgg acttttccct tgtatacaga aatctgcccg gggaaattaa
      181 aatttgaatc gatgattgtt tggctcatga tatatgatgg gatattgaat tttgttcgtg
      241 acgtgagtaa actttaaaac ttggtcgtta ggactaagtt tcgatttgac ccgttttaag
      301 tatttacttt attaagtccc gtgatagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnngattt gccccgtttt aagtatttgc tttattaagt
      541 cccgtgatga ttttcaatag aattataggc cgatatgact tctttaacca gcttgtgccg
      601 gatcacgtct ttgtcgtcta ggtaaaccat gccgactcct ttgatgtctt ttaaaataag
      661 taaggcctct ttaagccctg aagtgatgcg acgcggtaaa tcgacttgac cgggatcgcc
      721 tgtgatcata aacttagcgt gtttccccat acgggtcaaa aacatcttca tttgggcgtg
      781 ggtggtgttt tgggcctcat ccaaaattac aaaggcattg tccaaggtgc gtccacgcat
      841 aaaagccata ggagcaattt gaatcacgcc attttcaata tgagccgtta gtttttccgc
      901 gggaatcata tcacgtaaag cgtcgtaaag cggttgcata taaggatcga gcttttcttt
      961 aagatctccg ggaagaaatc caaggttttc gccggcctcc acagcaggac gggtcagaat
     1021 aatgcgtttg acctgttttt cttttagggc ttttactgcc aaagccaccc ccgtgtaggt
     1081 tttacccgtt ccggccggcc caatagcaaa aaccaaatcg tttttactca tttgagaaac
     1141 gattttcttt tgattcaggg tctgggcctt gatatgacgc ccgtttacgc cgtgaaccaa
     1201 gatgcggtca ctcgtggtat ccaagtcaaa cttagtgcct ttttcgctgg ttaaaatacg
     1261 ctcgattagg ttttcgtcga tgctgttgta tttgacaaac tgctcgagca gcgtggtcat
     1321 ctgctggtca aaagtttcca gaatttcctc atctccatag gccgctatac ggttgcctcg
     1381 tgcgacgatt tttagcttag gataatactt tttgatcagg tcaatgtgtg cattttgatg
     1441 cccaaaaaaa tcgcgggcac taacgtcggt gagttccagt atgatttcgt tcaaaagcgg
     1501 tccttttaaa gaggggttaa tgttcttgct aatatagttt ttctcttgaa aaaagtccct
     1561 tatttttgtt gtggttctca caaaaaatat caacaattca tggcgctgcc catcattacg
     1621 cttactactg attttggcga aaaagaccct tacgtaggag cggttaaagg cgctatgtac
     1681 agcgctttag acaatgttcg tattgttgat atctcccatg gcatttcccc ttttcatatc
     1741 gtggaggcgg cttatgtgat tcaaaacgct tatcggagtt ttcccaaggg cagcattcac
     1801 attatcggag tggacgggga actcacccct gaaaaccgtc atattggggt aaaactcgac
     1861 ggtcattatt ttatttgcgc caataacggg attttggcct tgctttccag cagcattaaa
     1921 cccgaaaaaa tcgttgagat caatattcat gggcatatgg aaagtaattt tcctgtactc
     1981 gatgtttttg tagccgccgc gtgccatatt cctcgaggag ggactttgga cgttatcgga
     2041 aaatccatca gtgcgctcaa agaacttaaa gggattcaac ctgtggtcaa tcttgaacgc
     2101 aaccaaatca tcggcacggt catttatatt gataactacg gtaatgtagt cattaacata
     2161 cagcgacaac tttttcaaga agtggccaaa gggcgtcaac cggttatcgc tgtgcgtaaa
     2221 ttccgcataa aaaatattta tgagcgttat agtgatgcca ttaattttga tgtccccaag
     2281 gatcgccgtg aggaagcagg aaaagaactg gctatttgga attcgtcagg atttttagaa
     2341 ttagcgattt acaaaagcaa tccgacttcg gtgggcagcg cctcttccct atttggattg
     2401 gaataccgcg attctattac cgttagtttt tagtttaaat gaacccaatc attaaacaaa
     2461 ccttcagcag ttttttcgct caagcagcgg ccttgttgct tatgggggta tttgtgcttg
     2521 gtgttggggt ttacttttgg gtgttgcccg gtgaccaaaa tttatttgat gctggatttg
     2581 gggatttaac tcaggttttt cgcgtattgc cttggggcgt gcttttggtg gtctcggccc
     2641 tgagcatgcg cctgtttagt ccagagcgtc aaagcgggac gttggcgctg ctgctcaccc
     2701 gccctgtttc tttgtggtcg gtggttttgg gaaaatatct gggcgccatg ggggtcctgg
     2761 gcttactctt gctcagtaca ctttgttatc cccttaccct tgagtacttg attaccgg
//
LOCUS       DPUP01000134            4888 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3414,
            whole genome shotgun sequence.
ACCESSION   DPUP01000134 DPUP01000000
VERSION     DPUP01000134.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4888)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4888)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4888
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..699)
                     /gene="argS"
                     /locus_tag="DHV98_04685"
     CDS             complement(<1..699)
                     /gene="argS"
                     /locus_tag="DHV98_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015480548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCK05654.1"
                     /translation="MKAENFLRITVTQALGEFFPGTHVPVEFQATRKDFEGDITLVIF
                     AMLKVIKGRPEAIGNQIGTYLVTHVPEVSAYNVVKGFLNISLSDSFYISAFEEITRAR
                     DFGVSAPTGRALMVEYSSPNTNKPLHLGHIRNNLLGYSVSEILKAAGHKVYKTQIIND
                     RGIHICKSMWAWQTYGQGQTPESTGLKGDKLVGNYYVKFDQVYKEQQKDLLAQGRTQE
                     QAEAEAPAILAAKEM"
     gene            complement(787..1719)
                     /locus_tag="DHV98_04690"
     CDS             complement(787..1719)
                     /locus_tag="DHV98_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidinotransferase"
                     /protein_id="HCK05655.1"
                     /translation="MAQTTNTILMIRPAVFRSNEETAVNNYFQNSLSLSAEKVIDLAR
                     NEFDDFVAQLRQKGVKVIVVEDDPALDTPDSIFPNNWISFHRNGSVALYPMFAENRRR
                     ERREEVLEAIENEGFIIREVMDYTEAEQEGVFLEGTGSMILDRVNHTAYCALSPRADE
                     DLFLEFCEDFDYYPIVFNAFQTVAQKRVAVYHTNVILCLGDTFAVICLSCIDNVQQRN
                     TVVAQLHADNKEIIDITEEQMHQFAGNMLQVKGLENRSIIVMSQSALDSLTPEQTKTL
                     EKHGELLAAKLPTIETCGGGSARCMMAEVFLPEA"
     gene            1902..2666
                     /locus_tag="DHV98_04695"
     CDS             1902..2666
                     /locus_tag="DHV98_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013452195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A phosphate methyltransferase"
                     /protein_id="HCK05656.1"
                     /translation="MALQEEFEQQGVWLFKYRSNLPIIILVLGYALYYYKELHPEAYF
                     LKGDQLWFDPYFEMICFGVCALGLLIRVYTVGHTPRFTSGRNTEEQVAETLNTTGLYS
                     TLRHPLYLGNFLMWWGLALLTGNIWFNVTFILFYWLYYERIMFAEEQFLRRKFGQTYT
                     RWAEGVPAFIPALSQFKTPNLSFSWRKVLKKEKNGLFAMFILFCLFDITGEYLNGGTY
                     KSGNLFFIYGTILTGLSYVVLKFLKKKTSLLEQEGR"
     gene            complement(2692..3621)
                     /locus_tag="DHV98_04700"
     CDS             complement(2692..3621)
                     /locus_tag="DHV98_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidinotransferase"
                     /protein_id="HCK05657.1"
                     /translation="MSFDLHINDEIGRLKAVVLGVALSNGPTPDLKDAYDPKSAEHIK
                     AGTYPKEEDMVQQMDAFADVLSRYGVTVYRPEIIHNYNQIFTRDIAFVIEDKMIIANI
                     LEDRSKEIHALDFLMDQIQADKIIKFPEHAHIEGGDVMPWGDYIFVGTFKDKDYRKYI
                     TARTNTAAVEHLQKIFPHKKVVSFSLKKSNFDPKENALHLDCCFQPLGKGKALIHKEG
                     FLIEHEYQWLVDFIGPENIFHVDKDEMYHMNCNVFTISPEVIVSEKGFTRLNNWLRAE
                     GFTVEEIPYSEIAKQEGLLRCSTMPLSRETAIK"
     gene            complement(3662..>4450)
                     /gene="gltA"
                     /locus_tag="DHV98_04705"
     CDS             complement(3662..>4450)
                     /gene="gltA"
                     /locus_tag="DHV98_04705"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004568712.1"
                     /note="type II enzyme; in Escherichia coli this enzyme
                     forms a trimer of dimers which is allosterically inhibited
                     by NADH and competitively inhibited by
                     alpha-ketoglutarate; allosteric inhibition is lost when
                     Cys206 is chemically modified which also affects hexamer
                     formation; forms oxaloacetate and acetyl-CoA and water
                     from citrate and coenzyme A; functions in TCA cycle,
                     glyoxylate cycle and respiration; enzyme from Helicobacter
                     pylori is not inhibited by NADH; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCK05658.1"
                     /translation="GKFPVLTAWTYRKMSGLPLDYGDNSLDYVDNFLKMMFTKPNSEF
                     QSNPVIKSAMIKLLILHADHEQNCSTSTVRLVGSSHAGLFASLSAGISALWGPLHGGA
                     NQAVIEMLEAIKEDGGDTKKFMAKAKDKNDPFRLMGFGHRVYKNFDPRAKIIKQAADE
                     VLEDLGIKDPVLDIAKGLEQEALNDPYFVERKLYPNVDFYSGIIYRALGIPVPMFTPM
                     FALGRLPGWIAQWREMRLRKEPIGRPRQLYTGATLRAFKDVEYR"
     assembly_gap    4451..4652
                     /estimated_length=202
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4653..>4888)
                     /gene="gltA"
                     /locus_tag="DHV98_04710"
     CDS             complement(<4653..>4888)
                     /gene="gltA"
                     /locus_tag="DHV98_04710"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004568712.1"
                     /note="type II enzyme; in Escherichia coli this enzyme
                     forms a trimer of dimers which is allosterically inhibited
                     by NADH and competitively inhibited by
                     alpha-ketoglutarate; allosteric inhibition is lost when
                     Cys206 is chemically modified which also affects hexamer
                     formation; forms oxaloacetate and acetyl-CoA and water
                     from citrate and coenzyme A; functions in TCA cycle,
                     glyoxylate cycle and respiration; enzyme from Helicobacter
                     pylori is not inhibited by NADH; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HCK05659.1"
                     /translation="IEELAEKADFLEVAYLLIFGELPNRDKLQTFQNDLKEQSLVAED
                     MKKILEGFPTSAHPMGVLSSLTSALVAFNPSSVNV"
BASE COUNT         1338 a         1021 c          925 g         1402 t
ORIGIN      
        1 catctctttt gccgctaaaa tagcgggggc ctcggcttcg gcctgctcct gagtcctccc
       61 ttgagcgaga agatcttttt gttgttcttt ataaacttgg tcaaacttga cgtagtaatt
      121 gcccactagt ttatcgccct tgagtcccgt gctttcaggg gtctgccctt gcccataagt
      181 ttgccaagcc cacatgcttt tacaaatgtg aataccccga tcattgatga tctgggtttt
      241 ataaacctta tggcccgctg cctttaaaat ttcagaaaca gaatacccca gcaggttatt
      301 tcttatgtgg cccaaatgca agggtttatt ggtgtttgga gaggaatact caaccattaa
      361 ggcacgtcca gttggggctg aaacaccaaa atcacgcgcc ctggttattt cctcaaaggc
      421 tgaaatataa aaggaatcac tgagacttat gttcagaaaa cctttgacca cattataggc
      481 tgaaacctcg ggaacatgag tcacaaggta ggtcccaatt tgatttccaa tggcttcagg
      541 gcgccctttg atgactttaa gcatcgcgaa aataaccaag gtgatgtccc cttcaaagtc
      601 ctttctggtc gcttggaatt cgacaggcac atgagttcct gggaaaaatt ctcctagagc
      661 ttgggttact gttattctca aaaaattttc ggccttcatc tcaatgtaat tcgcgtgttt
      721 cagggggcaa agataagtca aaaatatggc ttagttcagg tatttagtgg cctgaagcat
      781 ttgatttcaa gcctctggca agaacacctc agccatcata catcgagcac ttccaccacc
      841 gcatgtttca atggtgggca gcttagccgc aagtaattcc ccatgcttct cgagagtttt
      901 tgtttgctca ggcgttaaac tatccagggc actttggctc ataacaataa tggagcggtt
      961 ttcaagtcct tttacttgta gcatatttcc tgcaaattga tgcatttgct cttcggttat
     1021 atcgatgatc tccttattgt cggcgtggag ttgagcgaca accgtgttac gctgctgaac
     1081 attgtcaata caagacaggc atattaccgc aaaagtatcg cccaagcata agatcacatt
     1141 agtatgatac accgctaccc gcttttgcgc tacagtttgg aaggcattga agacaatagg
     1201 ataataatca aaatcttcac aaaattctag aaacaagtct tcatccgctc gaggagatag
     1261 tgcgcaatag gcggtatgat tgacccgatc taaaatcata cttccagtcc cttccaaaaa
     1321 cacgccttcc tgctctgcct cggtataatc catgacttct cgaatgataa aaccttcatt
     1381 ttctatagcc tcgaggactt cttctcggcg ttctcgccga cgattttcag caaacatggg
     1441 gtataatgct acactcccgt ttctgtgaaa actaatccaa ttattcggga aaattgagtc
     1501 tggagtatcc aatgcaggat cgtcctcgac cacaatgacc tttacgcctt tttgacgcag
     1561 ttgagcgaca aaatcatcaa actcatttct ggccaaatca ataactttct cagccgacaa
     1621 actcaatgag ttctgaaagt aattgttgac ggctgtctct tcattggagc gaaaaaccgc
     1681 cgggcggatc atcaaaatag tattcgtagt ttgcgccata attattagaa atcaacccga
     1741 caaacaggtt agtgaatgac aaaaataaag ttttgaaagg gcatttagat atatttgtac
     1801 gaaattgctc gcaataaaat tttcattgtt ttttgttttt gcaacacatc aaaaaacaat
     1861 ctgtttacac aacaaaccaa tcaacaacaa accaattaat tatggcatta caagaggaat
     1921 ttgagcagca aggagtatgg ttatttaaat atcggagtaa tcttcccatt atcattttgg
     1981 tattgggata cgcgctttat tattataaag aattacatcc agaggcctat tttttaaaag
     2041 gtgatcaact ctggtttgac ccttattttg aaatgatttg ttttggcgtt tgcgcgctgg
     2101 ggttattgat tcgtgtatac accgttgggc acacccctcg attcacctcg ggacgtaata
     2161 cggaagaaca ggtcgccgaa acattaaata caacaggact ttattcgact ttgagacacc
     2221 cactttattt ggggaatttt ttgatgtggt ggggccttgc cctgctcaca ggaaatatct
     2281 ggtttaatgt gacctttatc cttttttatt ggctttacta cgagcgtatc atgtttgcag
     2341 aagaacagtt cttaagacgt aaatttggcc aaacatatac ccgttgggct gaaggtgtac
     2401 cggcatttat tccggcgcta agtcaattca aaacacccaa cctgagtttt agttggagaa
     2461 aagtactcaa aaaggaaaaa aacggattat ttgccatgtt tatcctcttt tgtttatttg
     2521 acattacggg agaatattta aatggcggaa cctacaaatc gggcaatctt ttctttatct
     2581 acggaacaat tctcactgga ctcagttatg tcgtccttaa atttttaaag aaaaagacga
     2641 gcctcttaga gcaagaaggg cgctaaaatt ttatgagcct attgctgaag cttatttaat
     2701 ggccgtttcg cgagagagtg gcatggtact gcaacgcaat aatccttcct gcttggcaat
     2761 ttccgagtaa ggaatttctt ccacagtaaa tccttctgcg cgaagccagt tattgaggcg
     2821 ggtaaatccc ttttcagaaa cgatgacctc gggactgatc gtaaagacat tgcagttcat
     2881 gtgatacatt tcgtctttat cgacatgaaa tatattttca ggtcctataa agtccacaag
     2941 ccattgatat tcatgctcaa ttaagaaccc ttctttgtga ataagggctt ttccttttcc
     3001 taggggttga aagcagcaat ctaagtgcaa ggcattttct ttgggatcaa aatttgactt
     3061 cttgagcgaa aaagaaacga cttttttatg agggaaaatt ttctgcaaat gctctacagc
     3121 agcggtattc gttcttgcgg taatgtactt tcggtagtct ttatctttga atgtcccaac
     3181 gaatatataa tccccccaag gcatgacatc gcccccttcg atatgtgcat gttcaggaaa
     3241 tttaatgatt ttatccgctt gaatttgatc cattaaaaaa tcaagggcat gaatttcttt
     3301 tgatcgatct tcaaggatgt tggcaatgat cattttgtcc tctataacaa aggcaatatc
     3361 gcgggtaaag atttgattgt agttatgaat aatttcagga cggtataccg tgactccgta
     3421 acgactcaat acatcggcaa atgcatccat ctgctgaacc atatcttctt ccttggggta
     3481 ggttcccgcc ttgatatgct cagccgactt agggtcataa gcatctttta agtcaggagt
     3541 agggccattg cttaaggcaa caccgagtac caccgccttg agacgaccta tttcatcatt
     3601 gatgtgtaga tcaaaggaca tataattttc agtttaaagg aatgaccctt ttcagaataa
     3661 tctatcgata ctcgacatcc ttgaacgcac gtagtgtggc tcctgtatat aattgacgtg
     3721 gacgtccaat aggttccttg cgcaaacgca tctcgcgcca ttgtgcaatc caaccaggca
     3781 aacgacccag agcaaacatt ggcgtaaaca ttgggacagg aatacccaat gcacgataaa
     3841 tgatccccga ataaaaatca acatttggat aaagcttgcg ctccacaaaa taggggtcat
     3901 ttaaggcttc ttgctctaaa cctttggcaa tatccagcac tggatctttt ataccaagat
     3961 cttcaagaac ctcatctgcg gcctgtttaa ttattttagc tcttggatca aaattcttgt
     4021 aaactcggtg accgaagccc atcaaacgga aaggatcatt cttatccttg gcttttgcca
     4081 taaatttttt cgtgtcccca ccatcttctt ttatcgcttc gagcatttcg attaccgctt
     4141 gattcgctcc tccgtgcaat ggcccccaaa gggcactaat ccccgccgaa agcgaagcaa
     4201 ataaaccagc atgtgaagaa ccgactaagc gcactgtaga ggtcgaacaa ttttgttcgt
     4261 gatcggcgtg taaaatcaac aacttaatca tggctgactt aatgaccggg ttgctttgaa
     4321 attcgctatt tggttttgtg aacatcatct tcaaaaaatt atccacataa tccaaactgt
     4381 tatctccgta atctagaggc aagcctgaca ttttacggta agtccatgcg gtcaatacgg
     4441 gaaatttccc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnacattgac cgaactcgga ttgaacgcaa
     4681 ccaaggcact agtcagtgaa gataatactc ccatgggatg agcagaggtt ggaaaacctt
     4741 ctaatatctt tttcatatcc tctgcaacaa gggactgctc ttttaaatca ttttgaaatg
     4801 tttgtaattt gtcacgattc ggtaattctc caaaaatgag taaataggcc acctctaaaa
     4861 aatcagcttt ttctgccaat tcttcaat
//
LOCUS       DPUP01000135           12878 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_962,
            whole genome shotgun sequence.
ACCESSION   DPUP01000135 DPUP01000000
VERSION     DPUP01000135.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12878)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12878)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12878
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..531
                     /locus_tag="DHV98_04715"
     CDS             <1..531
                     /locus_tag="DHV98_04715"
                     /inference="COORDINATES: protein motif:HMM:TIGR03511"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05660.1"
                     /translation="IEGLKTAEKTKIKMPRTLTAVLWLMLLGACASDQIADYQSIDQG
                     LWADDQKIEFDLPALDSLRQYDVLLSLRNSNDYPFNNVFLLVTMTHPDGLAETDTLEY
                     RLAAPDGTWLGVGSGNIKDNLLAYKEAMAFDKTGSYRLSIQHALRNNGEVQGVSQLEG
                     IVELGYQIKPHGQKGD"
     gene            590..2913
                     /locus_tag="DHV98_04720"
                     /pseudo
     CDS             590..2913
                     /locus_tag="DHV98_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069608.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
     gene            2976..>3397
                     /locus_tag="DHV98_04725"
     CDS             2976..>3397
                     /locus_tag="DHV98_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007660176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-CoA--3-ketoacid-CoA transferase"
                     /protein_id="HCK05661.1"
                     /translation="MINKTVKNVAEACAGVESGMTLMLGGFGLCGIPECAIGELQRLG
                     VNQLTCISNNAGVDDFGLGLLLQTRQIKTMIASYVGENAEFERQMLSGELEVQLIPQG
                     TLAQRCQAAQSGIPAFYTPAGYGTEVGEGKESREFNGK"
     assembly_gap    3398..3651
                     /estimated_length=254
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3652..3962
                     /locus_tag="DHV98_04730"
     CDS             <3652..3962
                     /locus_tag="DHV98_04730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="succinyl-CoA--3-ketoacid-CoA transferase"
                     /protein_id="HCK05662.1"
                     /translation="EFNGKMHLLEHAFEADFSFVKAWKGDAAGNLIFKGTARNFNPNM
                     CGAAKITVAEVEELVPVGTLDPNQIHIPGIFVQRIFQGTDYQKRIEQRTVRSKQHGAG
                     "
     gene            3949..4608
                     /locus_tag="DHV98_04735"
     CDS             3949..4608
                     /locus_tag="DHV98_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020213175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-CoA--3-ketoacid-CoA transferase"
                     /protein_id="HCK05663.1"
                     /translation="MALDKFQIAERIAQEVKDGYYVNLGIGIPTLVANFVREDISVEF
                     QSENGILGMGPFPWEGEEDADLINAGKQTITALPGAAFFDSATSFSMIRGRHVDLTIL
                     GAMEVAQNGDIANWKIPGKMVKGMGGAMDLVASADRIIVAMTHTNKAGDSKLLSSCTL
                     PLTGVGCVKKIVTDLAVLEVRDNAFHLLERAPGVTIQEIQEATQGTLVIPNEVPEMLK
                     K"
     gene            complement(4867..6564)
                     /locus_tag="DHV98_04740"
     CDS             complement(4867..6564)
                     /locus_tag="DHV98_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05664.1"
                     /translation="MEKLDLTPLLSISSLSVRFTRPTPQLALSDIDFTVPKNSIIGIV
                     GESGSGKSLTAMAIMGLLNATNVTIEGKIVFNGTVIFPNQPEVVRKHRGRHIAMIFQD
                     PMTALNPAKRCGAQVDEMLVFQLGISKEKAKAKTLELFEQVKLPDPNSIYHRYPHQLS
                     GGQMQRVMIAMAISCAPKLLIADEPTTALDVTVQKDIIELLMEIQAKTGMSMIFISHD
                     LALVSEIAHEILVMYQGRIVEKGDPKAIFLNPKDEYTKALIAARPKGDLRLKSLATVA
                     SIKDKSFTPELYSAQQRGAKHQQIYLKEPILRVHNLSKAFFQKPFLFGKKQITQAVDQ
                     VSFSVYEGETLGLVGESGCGKTTLVKTLLQLEKASSGSVYYKGKDISQLSSAQWRHLR
                     KDIQIIFQDPFSSLNPKMTIGDCILEPMEVHGIGVSSQNRKQKLYQLLEQVGLDKSYA
                     SRYPHQLSGGQRQRVGIARAIALEPKIIVCDESVSALDISVQAQVLNLLNELKENFGF
                     TYIFISHDLSVVQYMSDQLLVMQKGRLVEIGDADEIYAMPKSPYTKSLIEAIPKGIS"
     gene            6657..7154
                     /locus_tag="DHV98_04745"
     CDS             6657..7154
                     /locus_tag="DHV98_04745"
                     /inference="COORDINATES: protein motif:HMM:PF07504.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05665.1"
                     /translation="MKNYLNRFGMSVVVILTTAFALAQKPPKQEVYEPQPTLMVLSQN
                     QSYSRNNLSAITQDLLGVDSASTFEFVKQDIDELGFTHDVYRQLYRALPVEFAQINVH
                     AKAGQVTALTNTTVVINDLDTRPTLSERSALNSAKSFVNGRTYLWEDAQSSALMDYQG
                     PGGEL"
     gene            complement(7224..8387)
                     /locus_tag="DHV98_04750"
     CDS             complement(7224..8387)
                     /locus_tag="DHV98_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HCK05666.1"
                     /translation="MKSLKKILSLLLISGISIVLLAYATNTDYLLKAVRTIYLKGHVT
                     AFLDDYHEFDNRTIATGPVKYSWPKHGLYNTTQASDRLEKKHQEMGTIAYVVIKNDSV
                     FYEQYYQGYSDSSNTNSFSMVKSMVSGLLGKSIMNGTIKSLDQPVGDFFPEFNEGLAA
                     QTTVGDLASMSSGTNWDEAYYSPLSITTRAYFDDYLREVILNLKVVDTPGQKFKYASG
                     DTQLLGMVLEKANGKTLSQQLTEYFWQPLGAEHDAYWQLDSEESGIEKAYCCLASNAL
                     DFARFGKLYKDHGNWMGTQILDSAYVAKSISPRFEDSPQYGYGWWMHPHMGHDFFMMK
                     GHLGQYVMVNPTDNLIIVRLGHLHSKREQNRDFGDDIPIYIEEAYKMLQQAGI"
     gene            complement(8421..9170)
                     /locus_tag="DHV98_04755"
     CDS             complement(8421..9170)
                     /locus_tag="DHV98_04755"
                     /inference="COORDINATES: protein motif:HMM:PF07264.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="HCK05667.1"
                     /translation="MKLFKNISLGLTAYSEAFKLIRMLRLWTFMAIPFGISLLVTLGV
                     SALAWQTRAIVSNYFKGFWPWSFGADFMANLGGILSSVGVMLMGFIMTKYLVLALSAP
                     FMSPVAEKIRTHLRPELQPIAVNKFWALLWRGLRLNLGNLVREIGLTLLLLILSFVPP
                     FGLITTPLLFLIQAYFVGVGNLDYSLEAFFNYRQSKSFLNQYRGLAVGNGIIFNLLAL
                     IPFVGVIIVLPLSVSAAAVGVLKHTDLDKKG"
     gene            complement(9202..9726)
                     /locus_tag="DHV98_04760"
     CDS             complement(9202..9726)
                     /locus_tag="DHV98_04760"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05668.1"
                     /translation="MKGHAIFVFLISLLTLPGLNGCKEQNQESEPTELVETVQFFCQT
                     PFKFPALTPEAQEIITDWPVFKDFRRISQNLVNIPLEDLKFRSNNLRLQTDSLSVTIP
                     QTLQSPIIDARLLVVTTRISLLNQEAKKSTPDSTVIEKRLIELHQCIDEFILHINEKI
                     EKDRLDQKGVQTMR"
     gene            9815..>10738
                     /locus_tag="DHV98_04765"
     CDS             9815..>10738
                     /locus_tag="DHV98_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007136928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HCK05669.1"
                     /translation="MSTTRILIVGALGQIGTELTQYLRHIYGRDNVVASDLKSPTDKI
                     SQQGPYEQLDALDAEGLRLLLKKYEINQVYLMAAMLSATAEKAPMKAWNLNMNSLFHV
                     LEAAKDGLIQRVFWPSSIAVFGPTTPADNTPQKTVMEPTTVYGISKQTGELWCAYYHK
                     NYGVDVRSLRYPGLISYTAPPGGGTTDYAIDIFHKALDQKHYSCFLTAHTELPMMYME
                     DAIRATHELMAADSEKIKERGAYNLAGVSFDPKTLAQAIAEEIPGFTIDYIPDFRQAI
                     ADSWPNSIDDSAACEDWGWAPKYDLSTMVSAM"
     assembly_gap    10739..10860
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(11072..>12878)
                     /gene="katG"
                     /locus_tag="DHV98_04770"
     CDS             complement(11072..>12878)
                     /gene="katG"
                     /locus_tag="DHV98_04770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015917738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HCK05670.1"
                     /translation="DKARRLLWPIKQKYGNSISWADLMMLTGNCALESMGFKTFGFAG
                     GREDVWEPEGDVYWGPETEWLGDERYTGDRDLANPLGAVQMGLIYVNPEGPNGTPDAV
                     ASARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDVKHVGAEPEGAAIEHQGLGW
                     ISTYNSGKGGDTITSGLEGAWTPTPIEWDNSYFDTLFGYEWELTKSPAGAQQWQPKNG
                     AAADAVPDAHDPNKRHAPMMATTDLALIQDPAYLEISKRFHENPDEFADAFARAWFKL
                     THRDMGPVSRYLGPEVPAEALIWQDPVPAADYKSIDQNDISELKVALLNSGLSVSELV
                     STAWTSAATYRGSDKRGGANGGRLRLEPQISWAVNRPDHLPGVLAKIESVQKAFNDAQ
                     TDGKKVSMADLIVLGGCAAIEKAAADAGHLIAVPFSPGRTDASQDQTDVASVNFLEPK
                     ADGFRNFVSGMHDRLAEELLLDRAQLLTLTAPEMTVLVAGMRVLDTNADGSKHGVWTD
                     RPGVLTNDFMTTIMDMSVAWEPSKQDKTTYIAKDRATGEVKRTGTRADLVFGSNSQLR
                     AIAEVYAAGDAQEKFVSDFVKAWNKVMNLDRFDLR"
BASE COUNT         3460 a         2732 c         2893 g         3415 t
ORIGIN      
        1 atagaggggc taaaaaccgc agaaaaaacc aaaataaaaa tgcctaggac gctgactgca
       61 gttttgtggc tgatgttact tggggcctgt gcatctgatc agattgcaga ttatcaaagt
      121 attgaccaag ggctttgggc agacgatcag aagatagaat ttgacctgcc cgctttagac
      181 agcttgaggc aatatgatgt ccttttgagt ctcagaaata gcaatgacta cccctttaac
      241 aacgtttttt tattggtcac catgacccat cccgatgggc ttgccgagac agacaccctt
      301 gaataccgac tcgcggcccc tgatggcact tggctggggg tcggctccgg aaatattaaa
      361 gacaatttat tggcctataa agaggccatg gcctttgaca agacgggctc ataccgactt
      421 tcgatccagc acgccttgcg caataatgga gaagttcagg gcgtttccca attagaggga
      481 attgtggagc tgggttatca gataaaaccg cacggacaaa agggcgatta gtttggtttt
      541 acttgcggat aagatcaacg gattttgatg tgaaaagaat tttttattca tgaaaaaaga
      601 taaaaagaca accaaaaaaa ccaaagccaa atctggtttt cgtgtatata tactttggtt
      661 ttgggggttg tttttgtttg gcatattaag tgttgtggcg cttttttcgt tgactgcagc
      721 gggcgttttt ggtccgctcc ccgatgagac tcgtttagag gacccagaaa aggatttggc
      781 cacccagatt atttcagtag agggtcaggt tattggaaaa ttttttaccg aaaacaggac
      841 gccggtaaaa tttgaagacc ttccagagca tttggtacag gccttaattg ccacggagga
      901 tgcccgcttt tatgatcact ccggtgtaga cggtcgcggg actttgcgtg cccttgcttt
      961 tttaggatcg agaggaggcg ccagtaccat cagtcagcaa ttagcaaagc aattttttac
     1021 cgatcaagtc tcgagcaata aatttgagcg ggggatgcaa aaagtcaaag agtggatcat
     1081 tgctacgcgt ttggaacgcc gctatacaaa agaagagatc atcaccatgt actttaatgt
     1141 ttacgatttc ttgaatttag ctattggcat cgagtcggct gcgcaaatat attttaataa
     1201 acaacctcag gaattaaata ttcaggaatc agcgatgctt gttgggatgt ttaaaaattc
     1261 tgcactgtat aatcccaaac gaaatgcggt gggcgtgacc aatcgccgca atgtggtgct
     1321 gagtcaaatg gccaaatacg attatattac agggcaagtt cgcgactcac ttcaaggctt
     1381 gcctttgggc gtaaatttta ccccacaaga tcatgacaag ggcctgggaa cctacgtgcg
     1441 tgaatatatc cgaggttttg taaaacaatg ggccaaggat catccaaagg cagatggaag
     1501 tctttggaac gtcagtagcg acggacttaa aatttacacc accctcaatg cgcaaatgca
     1561 gcgatttgcc gaagaagcag tagatcagca catgagtcgg cttcagaggg tctttgatcg
     1621 tcaaaattca agaaatcgaa cagctccgtt tttagacatt actccggaag aagtgcaggg
     1681 catttacacc tcggccatga aacgttcaga ccgttggcgt gagatgaaac agcaaggtaa
     1741 gtctgagaat gaaattattg aaagtttcaa acgccccaca cccatgacgg tatttaaata
     1801 ttccggtgat gtggatacga ttatgtcgcc tttggattcc ataaaatact acaagtctta
     1861 tctgcgtgca gccatgctct ctatggtccc tcaaaccggc gagatccgtg cctgggtcgg
     1921 ggggatagat tataaaaatt ttaaatacga tatggtgcgt tatggccaaa gacaaatcgg
     1981 ctctacgttt aagccctttg tttacgctac agcgatcgac caaatgcata tgtccccttg
     2041 tgacacgctg cccaatgcgc cctattgtat cccacaaggg cgctttggta ttcctgagga
     2101 ttggtgtccc aagaactcaa gtgacaccta cggagggatg atgagtctaa aggatgcttt
     2161 ggcaaactca gtaaatacgg taaccgctcg gttaattgat cgcgttggtc ctaagccagt
     2221 gattgatttg gatgagaaga tgggcgtagc cccagggcgt attcctcaag ccccctcaat
     2281 tgctttagga acgccggatt tatcgcttta tgaaatggtc ggggcttatg ggacttttgt
     2341 gaatgaaggc gtttatgtta cgccaaactt ggttcaacgc atcgaggaca aaaacggaac
     2401 catcctttat caacatgttc ctgaaacaag ggatgtattg agtcgggagt cggcttgnng
     2461 gcttatgtca ccttaaacct tatggaagga gttaccgaat cgggttctgg tcagcgtttg
     2521 cgtcacagtt gggctaaagg gaatgcggtt tatgaggacg ctgttacagg atatccatac
     2581 gcctttgaaa atccaatcgc aggaaaaacg gggacgactc aaaacaattc tgacggctgg
     2641 tttatgggga tggtgcccaa tttggctacg ggagtttggg taggcggtga agaccggtcc
     2701 acccattttg aaggcatcgc ctatggtcaa ggcgcaacga tggcgcttcc tatatgggcc
     2761 ttatacatga aacaatgtta tgccacacct gaattagcaa tttcagcaga agaatttccc
     2821 aaacccgacg tcctcaccat agaaacggat tgcagtgtat acggtaaagc gctgaatcaa
     2881 ggcgtagatt taggaaatga gttggatttt taattgatgc cttataatgt acagggatga
     2941 aagcccttgg gaataacgac taaaacgacc aatttatgat caataaaaca gtaaaaaatg
     3001 ttgccgaagc ttgcgcgggg gtcgagagcg gaatgacgct catgctcgga ggcttcgggc
     3061 tttgtggcat tcctgaatgc gccataggtg aattgcaacg cttaggggta aatcaattga
     3121 cttgtatttc taataatgca ggcgtcgatg atttcggact cggtcttttg ttgcaaaccc
     3181 gacaaattaa aaccatgatt gcctcctatg tgggcgaaaa tgcggagttt gaacgccaaa
     3241 tgctcagtgg tgaacttgaa gttcaattaa ttccacaggg caccctagcc cagcgttgtc
     3301 aggcggcaca gagtggtatt cccgcttttt ataccccagc gggctatggc accgaggtcg
     3361 gtgagggcaa agaatctcga gaatttaacg gaaagatnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngagaattta
     3661 acggaaagat gcacctactt gagcatgctt ttgaggctga tttttcattt gttaaagctt
     3721 ggaaaggaga tgcggcaggg aatttaatat ttaaagggac cgcccgcaat tttaacccga
     3781 atatgtgtgg cgcagcaaaa atcaccgtag cagaggttga agaacttgtc cccgtaggaa
     3841 ctctggaccc caatcaaatt cacattccag gaatatttgt tcagcgaata tttcagggca
     3901 ccgattacca aaaaagaatt gaacaacgaa ccgtaagatc taaacaacat ggcgctggat
     3961 aaatttcaaa ttgcggagcg cattgcgcaa gaagttaaag atggctatta cgttaatcta
     4021 ggtatcggta ttccgacact ggtagccaat tttgtgcgcg aagatattag cgttgaattt
     4081 caaagtgaaa atggaattct tggcatgggt ccatttcctt gggaaggaga agaagatgcc
     4141 gaccttatta atgcgggaaa acaaaccatc acggcactgc caggagcggc cttcttcgat
     4201 agcgctacga gtttctcaat gattcgcggc cgacatgttg atttaaccat cttgggggct
     4261 atggaggtgg cccagaatgg cgatatagcc aactggaaga ttccaggaaa aatggtaaaa
     4321 gggatgggag gagcaatgga tttagtcgcc tcggcggatc gaattattgt tgcgatgacc
     4381 cataccaata aggcaggaga ttctaagttg ttgtcttctt gcacccttcc acttacaggg
     4441 gtaggctgtg tcaaaaaaat cgtaaccgat ttggcggtac tcgaagtccg tgataatgcc
     4501 tttcatctac ttgaacgagc tcctggggta accatccaag aaatacaaga ggcgactcaa
     4561 gggaccctag taattccaaa tgaagttcca gaaatgttaa aaaaataagc ttttaatcga
     4621 atttataagc ttttaatctg ttatttgatc aaattttctc aggtttgctt cagttaatgt
     4681 gatgaaccta cttcatcatc ttgttgttat caagccccaa atctgcacca tgtagattta
     4741 gcattaagcc cgttctttgt gaggttagaa cgggtttttt tgtggtcatt ttgcactacg
     4801 attttttggc attatgcctt ggacatgaca cggcccacac catcgcctag cgaaatctta
     4861 tgatttttac gagatgcctt tgggaatggc ctctatgagg cttttggtat aaggagattt
     4921 tggcatggca tagatttcat cggcgtctcc gatttcaact aagcgccctt tttgcatcac
     4981 caaaagttgg tccgacatgt attgtacaac ggagagatca tgtgaaataa agatataggt
     5041 aaatccaaaa ttttctttaa gctcattgag taggttcagc acctgggcct gtacagaaat
     5101 atctagagca ctcacagatt catcgcatac aatgattttt ggctcaagcg caatggctcg
     5161 cgcaataccc acgcgctgcc tttgacctcc tgagagctga tgaggatagc gcgaggcgta
     5221 ggatttatct aggccgactt gttcgagtaa ttgataaagt ttttgtttgc gattttgact
     5281 cgatacgccg atgccatgaa cttccatggg ttcaagaata cagtccccaa tcgtcatttt
     5341 ggggtttaag gaagaaaacg gatcttgaaa aatgatttga atgtccttac gcagatggcg
     5401 ccattgggca ctagagagtt gactgatgtc ttttccttta tagtagaccg aaccgctact
     5461 tgctttttcg agttgaagaa gtgttttcac taaagttgtt ttcccgcagc ctgattcacc
     5521 gacaagacct agggtttctc cttcataaac cgaaaaggac acctggtcaa cggcctgggt
     5581 tatttgtttt ttgccaaaaa gaaagggctt ttggaagaag gctttgctta ggttgtgcac
     5641 gcgaagaatc ggttctttta gatagatctg ttgatgtttt gccccacgct gctgggcact
     5701 gtatagctct ggggtaaaac tcttatcctt tattgaggct actgtggcta aagatttaag
     5761 acgaaggtct cctttaggac gtgcggcgat cagggctttg gtatactcat ctttggggtt
     5821 cagaaaaatt gccttggggt cgcctttttc gacaatacgc ccttgataca tgaccaggat
     5881 ttcatgagca atttcagaca caagtgccag gtcatgagaa ataaaaatca tggacatccc
     5941 agtttttgcc tggatttcca ttaggagctc aataatatct ttttgcacgg taacatccag
     6001 agccgtggtg ggctcatcgg cgatgagtaa ttttggagcg caactaatgg ccatggcaat
     6061 catgacccgt tgcatttggc ccccactgag ttgatgcgga tagcggtggt aaatggaatt
     6121 cggatcaggg agtttaactt gctcgaagag ttctaaggtt tttgccttgg ccttttcctt
     6181 actaatgccc aattggaata cgagcatttc atcgacttga gcgccacatc gtttggccgg
     6241 atttaatgcg gtcattggat cttgaaagat catggcgata tggcgtcctc tatgttttct
     6301 taccacctcg ggttgattgg gaaatataac cgttccattg aaaacaattt ttccctcaat
     6361 agtgacatta gtggcattga gcagtcccat aatggccatg gccgtgaggg atttgccgct
     6421 ccctgactct ccgactatgc caataatact attttttggc accgtaaaat caatatctga
     6481 caatgccaac tgcggtgttg gccgagtaaa acgaacactt agactactaa ttgataataa
     6541 gggagttaaa tctagttttt ccacacgaat ctcttttaac tttgattaaa tagtagtatt
     6601 tttctgacta cattcactta ttgctaaaaa atatacaact aatacatcaa gaatacatga
     6661 aaaattactt gaatcgtttc gggatgtcgg tcgttgttat tttgaccact gcctttgctc
     6721 ttgcacaaaa accacctaag caagaagttt acgagccaca acccacctta atggttttgt
     6781 cacaaaacca aagttattca agaaataacc tatctgcgat cactcaagac ctattgggtg
     6841 tagactcagc atcaactttt gaatttgtca aacaagatat agatgagctc ggatttactc
     6901 atgatgtcta cagacaactt tatcgcgccc tacctgtgga gttcgctcaa atcaatgtgc
     6961 atgccaaagc gggtcaagta actgctttga ccaacaccac tgtagttatc aatgatttgg
     7021 acaccaggcc aacactttct gagagatctg cattgaattc ggccaaaagt tttgtgaatg
     7081 ggcgtaccta tttgtgggag gacgctcaga gcagcgcttt gatggattat caaggacctg
     7141 gcggagaatt atgattttgg gaccaatggt cggggtaagc aatcgagcaa agcgggtgaa
     7201 gtcggtattt aaacattaaa ttattaaatc ccagcctgct gaagcatttt ataagcttct
     7261 tcaatataaa tcgggatatc atcgccaaaa tcccggtttt gttctctttt ggaatgtaaa
     7321 tggcctaagc gaacgatgat taaattatct gttgggttga ccataacata ctgcccgagg
     7381 tggcctttca tcataaagaa atcgtgcccc atatgggggt gcatccacca gccataaccg
     7441 tattgcggtg aatcttcaaa gcgcgggcta atgctcttgg ccacataggc gctgtccaaa
     7501 atttgtgtgc ccatccagtt gccgtggtcc ttataaagtt tgccaaaacg cgcgaaatca
     7561 agggcgtttg aggccaaaca gcagtaggcc ttttcaatac cggattcctc cgagtctagc
     7621 tgccaataag catcatgctc ggcacctaaa ggctgccaaa aatattcggt caattgctgg
     7681 ctcaaggttt tgccattggc cttttctaaa accataccca aaagctgcgt atctccactg
     7741 gcatatttaa acttttgtcc aggggtgtct accactttta aattcaaaat gacttcgcgc
     7801 aaatagtcgt cgaaataagc tcttgtggtg atcgaaaggg gggagtaata ggcctcgtcc
     7861 cagttcgttc cagaggacat agaggctaaa tcgcccactg tagtttgcgc agcgaggccc
     7921 tcgttaaatt cggggaaaaa atcgcccaca ggttggtcta gacttttaat ggtgccgttc
     7981 atgatggatt tacccagcag accagagacc atgcttttga ccatagaaaa ggaattggta
     8041 tttgagctat cagaatagcc ttgataatat tgttcgtaaa aaacactatc atttttgatc
     8101 accacatagg cgatagtgcc catttcttga tgtttttttt cgagtcgatc agaggcctgg
     8161 gttgtattat aaagtccgtg ctttggccaa gaatatttta ctggacccgt ggcaattgtt
     8221 cggttgtcaa attcatggta atcgtccaga aatgctgtca catgcccttt tagataaatc
     8281 gtgcgcacgg cctttaacag gtaatccgta tttgtggcgt aggccaacaa gacgatagaa
     8341 ataccgctga ttaacaagag gctgagaatt tttttaagac ttttcattat ggtagaaatg
     8401 ggtgttaatt gtgtgttctt ttatcctttt ttgtccagat cggtatgttt tagaacacct
     8461 acagcagcag cgcttactga aagcggcaag acaataataa cgccgacaaa cgggataaga
     8521 gccaataagt taaaaataat cccgttgccc accgcgagac cgcggtattg attgagaaaa
     8581 cttttgcttt ggcggtaatt gaaaaaagcc tccaaactat agtccaggtt ccctacccct
     8641 acgaaatagg cttgaatcaa aaataaaaga ggcgtagtaa tgagaccaaa tggaggaaca
     8701 aagctcaaaa ttaatagcaa aagggtcagt ccaatctctc gaactaaatt tcctaagtta
     8761 agtcttagtc cgcgccaaag cagggcccaa aatttattta cagcaatggg ttgaagttcg
     8821 ggtctgagat gcgttctgat tttttctgct accggactca taaaaggggc gctcaaagct
     8881 aaaaccaagt atttggtcat gataaagccc atgagcatta caccaacaga gctcaaaata
     8941 cccccaaggt ttgccataaa atccgcacca aaagaccacg gccaaaatcc tttaaaataa
     9001 ttgctgacta tcgctcgggt ttgccaggcc aaagcactta ccccaagggt aaccaacaaa
     9061 ctaatcccaa aaggaatcgc cataaaggtc cataagcgaa gcatccgaat cagcttgaac
     9121 gcttccgagt atgccgttaa tcctaaacta atatttttaa aaagcttcat atcaaatctt
     9181 cagagaggtc ttttaacagg gttagcgcat cgtttgcact cctttttgat caagacgatc
     9241 tttttctatt ttttcgttga tgtgcaaaat gaactcatca atacattggt gtaattcgat
     9301 taatcgcttt tctatgacgg tcgaatctgg agtcgatttt ttggcttctt gattgagcag
     9361 acttattcgg gttgtgacca caaggagcct cgcgtcaatt attggcgatt gaagcgtttg
     9421 aggtattgtc acagataagg agtctgtttg caaacgtaaa ttattgctgc ggaactttaa
     9481 atcttctaat gggatattga caaggttttg tgaaattcta cgaaagtcct taaataccgg
     9541 ccagtctgta ataatttctt gggcctcagg agttaatgcc ggaaatttaa agggcgtttg
     9601 acaaaaaaat tgaacggtct caacaagttc tgtcggttca gattcctggt tttgttcttt
     9661 gcaaccattt aagcctggca aagtgagcaa gctgatgaga aaaacgaaga tagcgtggcc
     9721 tttcatggag taaagataag actttgcatg gctgttgagt aaaaaaatcc atagatgcct
     9781 gacgaaatat gtatctttga tcaaacgaac caccatgtcc acaacacgta ttttaatcgt
     9841 tggcgcttta ggccaaatcg ggacagaact cacccaatac ttgcgccata tttacggcag
     9901 ggataatgta gtcgcaagtg atctcaaatc cccgaccgac aaaatttctc aacagggccc
     9961 ttatgagcag ctcgatgcat tggacgccga aggactgcgt ttgttactta aaaaatacga
    10021 gatcaaccaa gtttatctga tggcggctat gctctcggca accgccgaaa aagccccgat
    10081 gaaagcctgg aatttaaaca tgaatagctt atttcacgtc ctagaagcgg caaaagatgg
    10141 actgatccag cgtgtgtttt ggccctcgag tattgctgtt tttggcccga ctacccccgc
    10201 agacaacacc ccgcaaaaga cggtcatgga gccgaccacg gtttatggaa taagtaagca
    10261 aacgggagag ctatggtgtg cgtattacca taaaaattat ggggtggatg tccggagttt
    10321 acgctatccg ggactgatca gttacacggc tcctcctgga ggaggtacaa cggactatgc
    10381 tatagatatt tttcacaaag cacttgatca aaagcattac agctgttttc tgaccgccca
    10441 tacagagctt cccatgatgt atatggagga tgcgatacgt gctacgcatg agctcatggc
    10501 cgctgattcc gaaaaaatta aagaacgcgg agcctataat ttggctgggg tgagctttga
    10561 tcctaagact ttggctcagg ccatcgctga ggaaattcct ggatttacca tcgattatat
    10621 cccagatttt cggcaagcca ttgctgattc ttggccaaac agtattgacg atagtgccgc
    10681 ctgtgaagat tggggatggg ctccgaagta tgatctttct actatggttt cggccatgnn
    10741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10861 caggagcctc gctaaattta ttagcgcgcc ataaatggtt tgcgcaaatc ttcgagacgc
    10921 acacgatgcc aattcgcgta ggacgaccca tcgcgcgcga tccagccatc gcgggccgtg
    10981 cctcaagaat ctaagaccac catgctgcaa cttcaagttc cggcatggac agtcttcgaa
    11041 catcattcaa ttatcgtaat tcaaacctga actatctcaa atcaaagcgg tcaaggttca
    11101 tcaccttatt ccacgctttg acaaaatcac tcacaaattt ctcttgagcg tcccccgcgg
    11161 cataaacctc ggcaatcgcg cgcaattgag aattcgatcc gaaaaccaag tccgcacgtg
    11221 ttccggtgcg cttcacttct cctgtggcgc ggtcttttgc gatataggta gttttgtctt
    11281 gttttgaagg ttcccaagct acgctcatgt ccataatcgt ggtcataaaa tcattggtca
    11341 gtacccctgg acgatcggtc caaaccccgt gcttactgcc gtcagcgttg gtgtccagca
    11401 cacgcattcc agccacaaga accgtcattt caggagccgt aagggtcaag agctgcgcac
    11461 gatccaacaa caattcttcg gccaaacgat cgtgcattcc agaaacgaaa tttctaaatc
    11521 catccgcttt tggctcgagg aaattaaccg aggcaacatc agtttggtct tgcgaagcat
    11581 cggtacgtcc aggactaaac ggaacagcaa tcaaatgccc agcatcagcc gctgcttttt
    11641 cgatagccgc acaaccacct aggacgataa gatcagccat agagactttt ttgccgtcgg
    11701 tttgggcatc gttaaaggct ttttgaacgc tttcgatttt agccaaaacc ccaggcaagt
    11761 ggtcaggacg attcacagcc caactgattt gtggttcaag gcgtagacga ccaccattgg
    11821 ctccaccacg cttgtcactt ccacggtaag tagccgcaga agtccacgct gtagaaacca
    11881 attctgaaac gctcaatcca gaattcaaaa gagcaacttt taattctgaa atgtcgtttt
    11941 gatcgatgct tttgtaatct gctgcaggca ctgggtcttg ccagattaaa gcttcagcag
    12001 gaacttctgg tcctaagtaa cgagatacag gacccatgtc gcgatgcgtt aatttaaacc
    12061 atgcacgagc aaaggcatcg gcaaactcat caggattttc gtggaatctt tttgaaattt
    12121 ctaaataagc tggatcctga attaaggcca aatccgtcgt ggccatcatc ggcgcgtgac
    12181 gcttgtttgg atcatgggca tcaggcacgg catcggctgc ggctccgttt ttcggttgcc
    12241 attgttgtgc tccagcagga cttttggtga gctcccactc ataaccaaac aaggtatcaa
    12301 aatagctgtt atcccattca attggagtgg gcgtccaagc tccttctaaa ccactggtga
    12361 tggtgtcgcc acctttacca gagttgtaag tgctgatcca tcccaagcct tggtgttcga
    12421 tcgcagcacc ttctggttct gcgccgacgt gttttacatc tccggcacca tgtgtttttc
    12481 caaaggtatg tcctccagcg attagcgcta cagtttcttc atcattcatg gccatacggg
    12541 caaaagtctc gcgaatatca cgtgctgaag ctacagcatc tggcgttcca tttggcccct
    12601 ccggattgac atagataaga cccatttgta cggccccaag tgggtttgct aggtcgcgat
    12661 ctcccgtgta acgctcgtca ccgagccatt cggtctctgg cccccagtaa acatctcctt
    12721 ctggttccca cacatcttca cgtccaccgg caaatccaaa agttttaaag cccatggatt
    12781 ctaacgcgca gttaccggta agcatcataa ggtctgccca tgaaatgctg ttgccatatt
    12841 tttgtttgat gggccaaagc aatctgcggg ccttgtct
//
LOCUS       DPUP01000136           10996 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2067,
            whole genome shotgun sequence.
ACCESSION   DPUP01000136 DPUP01000000
VERSION     DPUP01000136.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10996)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10996)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10996
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>244
                     /gene="rplC"
                     /locus_tag="DHV98_04775"
     CDS             <1..>244
                     /gene="rplC"
                     /locus_tag="DHV98_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018279588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCK05671.1"
                     /translation="FVDISGITKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGSIGA
                     ASYPARVFKGMRMAGQMGNSKVKVENLRVLKVVPEK"
     assembly_gap    245..472
                     /estimated_length=228
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <473..550
                     /locus_tag="DHV98_04780"
     CDS             <473..550
                     /locus_tag="DHV98_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018279588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HCK05672.1"
                     /translation="VPEKNLLVVKGCVPGHKNAYLTITK"
     gene            550..1179
                     /locus_tag="DHV98_04785"
     CDS             550..1179
                     /locus_tag="DHV98_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HCK05673.1"
                     /translation="MKVAVLDKNGKDTGRKVDLSKDVFGIEPNNHAVYLDVKQYLANQ
                     RQGTHKAKEKAEITGSTRKLKKQKGTGTARAGSIKSGLFKGGGRFFGPRPRNYGFKLN
                     KNLKRLARRSALSMKAQNKAILVLEDFNMEAPKTKEFTALLQSLGLENKKSLFVLGDS
                     NNNVYLSSRNLRGTEVINNSELSTYKIMNANSLVLFEGSLESIEENLSK"
     gene            1187..1477
                     /locus_tag="DHV98_04790"
     CDS             1187..1477
                     /locus_tag="DHV98_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HCK05674.1"
                     /translation="MNILIKPIITEKATRNAEDLNCFTFVVNPKANKIEIKNAVESAY
                     GVSVTSVRTINVRPDRRVRFTKTGVQTGKTTAVKKAIVQVAEGDTIDFYANI"
     gene            1504..2328
                     /locus_tag="DHV98_04795"
     CDS             1504..2328
                     /locus_tag="DHV98_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011963466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HCK05675.1"
                     /translation="MSVRKLKPITPGQRFRVVNGFDAITTDKPEKSLLAPKKRSGGRN
                     SQGRMTMRYIGGGHKKRYRIIDFKRDKHGIPATVATIEYDPNRTAFIALLNYQDGEKR
                     YIVAQNGLQVGQNVVSGDGAAPEIGNTLTLSQIPLGTIISCIELHPGQGAVLARSAGA
                     FAQLMAREGKYATVKLPSGETRMILVTCSATIGAVSNSDHQLLVSGKAGRSRWLGRRP
                     RTRAVVMNPVDHPMGGGEGRSSGGHPRSRKGIPAKGYRTRSKTKASNKYIVERRKK"
     gene            2332..2610
                     /locus_tag="DHV98_04800"
     CDS             2332..2610
                     /locus_tag="DHV98_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HCK05676.1"
                     /translation="MPRSLKKGPYVHYKLDKKVTDNIESGNKSVIKTWSRASMITPDF
                     VGQTIAVHNGKQFVPVYVTENMVGHKLGEFSPTRSFRGHGGNKNKGKK"
     gene            2617..3024
                     /locus_tag="DHV98_04805"
     CDS             2617..3024
                     /locus_tag="DHV98_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HCK05677.1"
                     /translation="MGVRKRERAEEIKEAKKTQYFAKLNNCPTSPRKMRLVADLVRGE
                     KVNHALNILKFSQKEASRRLEKLLLSAIANWQAKNEEASLEDADLFVKEIRVDGGSML
                     KRLRTAPQGRAHRIRKRSNHVTLVLGANDNTQS"
     gene            3032..3757
                     /locus_tag="DHV98_04810"
     CDS             3032..3757
                     /locus_tag="DHV98_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007803635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HCK05678.1"
                     /translation="MGQKTNPIGNRLGIIRGWESNWYGGNDYGDKLAEDDKIRKYVHA
                     RLSKASVSRVIIERTLKLVTVTITTARPGIIIGKGGQEVDKLKEELKKITGKEVQINI
                     HEIKRPELDAFLVASSIARQIENRISYRRAIKMAIAASMRMNAEGIKVQISGRLNGAE
                     MARSEAYKDGRIPLSTFRADIDYALAEAHTTYGRLGIKVWIMKGEVYGKRELSPLVGL
                     SSKKSGVKANSGRGANKARRNRK"
     gene            3778..4197
                     /locus_tag="DHV98_04815"
     CDS             3778..4197
                     /locus_tag="DHV98_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HCK05679.1"
                     /translation="MLQPKRTKFRKTMKGRMKGNAGRGNQLSYGTFGIKSLDSNFLTA
                     RQIEAARIAATRFMKREGSIWIMIFPDKPITKKPLEVRMGKGKGAVEYWAAVVKPGRV
                     LFEVSGVPLETAKEALRLAAQKLPVQTKFVISRDYQA"
     gene            4216..4407
                     /locus_tag="DHV98_04820"
     CDS             4216..4407
                     /locus_tag="DHV98_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HCK05680.1"
                     /translation="MKQSEITKASTAELEEKLAEIKKEHTDLRIAHAISPLENPIRLR
                     GLRKAVARIATELTKREVQ"
     gene            4425..4682
                     /locus_tag="DHV98_04825"
     CDS             4425..4682
                     /locus_tag="DHV98_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020213643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HCK05681.1"
                     /translation="MEKRNLRKERIGVVTSNKMEKSIVVSEVKKVKHPMYGKFVLKTK
                     KYVAHDEKNDCNEGDTVRIMETRPMSKTKCWRLVEIIERAK"
     gene            4685..5053
                     /locus_tag="DHV98_04830"
     CDS             4685..5053
                     /locus_tag="DHV98_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002675043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HCK05682.1"
                     /translation="MIQQESRLKVADNTGAKEVLCIRVLGGTKRRYASIGDKIVVTVK
                     EATPNGNVKKGSVSTAVVVRTVKEVRRPDGSYIRFDDNACVLLNPQGEMRGTRVFGPV
                     ARELRDKQFMKIVSLAPEVL"
     gene            5065..5379
                     /locus_tag="DHV98_04835"
     CDS             5065..5379
                     /locus_tag="DHV98_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HCK05683.1"
                     /translation="MEKLKIKSGDLVLVTAGDHKGSEGKVLRVLKDKNKAIVEGVNLV
                     KKHQKPSAASPQGGITEMEAPIHLSNLSIKDPKSGEATRVGFKMEGDKKVRFAKKSNQ
                     VL"
     gene            5382..5933
                     /locus_tag="DHV98_04840"
     CDS             5382..5933
                     /locus_tag="DHV98_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018279599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HCK05684.1"
                     /translation="MGYTPRLKEEYKSRVITALTDEFGYNNVMQVPKLEKIVVSRGVG
                     SAVADKKLIEYSVDELTKIAGQKAVATISKKDVATFKLRKGMPIGAKVTLRGERMYEF
                     LDRLITSALPRVRDFNGIKSTGFDGRGNYSLGITEQIIFPEIDIDKVKKIEGMNVTFI
                     TSAHTDQEAKSLLTQLGLPFKKN"
     gene            5935..6204
                     /locus_tag="DHV98_04845"
     CDS             5935..6204
                     /locus_tag="DHV98_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010251725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HCK05685.1"
                     /translation="MAKESMKAREVKRAKTVAKYAAKRKALKEAGDYEALQKLPKNAS
                     PVRMHNRCKLTGRPKGYIRTFGLSRVMFREMANQGLIPGVRKASW"
     gene            6266..6667
                     /locus_tag="DHV98_04850"
     CDS             6266..6667
                     /locus_tag="DHV98_04850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008239522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HCK05686.1"
                     /translation="MNTDPIADFLTRVRNASLAGHRVVEVPASNIKKEITKILFDQGF
                     ILSYKFEEGSNPQGTIKIALKYDRITKEPVIRRLVRVSTPGLRQYVGAKDMPRVLNGL
                     GIAIISTSAGVMTGKQAKAQNTGGEVLCYVH"
     gene            6686..7228
                     /locus_tag="DHV98_04855"
     CDS             6686..7228
                     /locus_tag="DHV98_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HCK05687.1"
                     /translation="MSRIGNNPVAIPEGVTAEVNGQVITVKGKLGELTQEFDAVSIAV
                     EEGQVWVTRPSDAKDHRAKHGLYRSLVNNMIKGVSAGWSKQLELVGVGYRASNQGNKL
                     DLALGYSHNIVLDIAPGVIVETVSDKGKNPIVKLTSHDKQLVGQVAAKIRSFRKPEPY
                     KGKGIKFVGEIIRRKAGKSA"
     gene            7239..7595
                     /locus_tag="DHV98_04860"
     CDS             7239..7595
                     /locus_tag="DHV98_04860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013996572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HCK05688.1"
                     /translation="MALSKEERRERIRFRIRKIVSGNAQRPRLAVFRSNKEIYAQLID
                     DLSGVTLAAASSRDKDIDAASTNKSEAAKLVGQSVALKALKAGVTEVTFDRGGYLYHG
                     RVKSLADGAREGGLKF"
     gene            7600..8124
                     /locus_tag="DHV98_04865"
     CDS             7600..8124
                     /locus_tag="DHV98_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008613581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HCK05689.1"
                     /translation="MYQDYKNVELVKPGGLELKDRLVGVQRVTKVTKGGRAFGFSAIV
                     VVGDEKGVVGHGLGKSKDVASAIAKAIEDAKKNLVRIPLNKATLPHEQKGKYGGARVN
                     LLPAAAGTGVIAGGAVRAVLEAVGVHDVLSKSQGSSNPHNVVKATFDALLQLRSAETV
                     AKQRGITMDKLFKG"
     gene            8135..8314
                     /locus_tag="DHV98_04870"
     CDS             8135..8314
                     /locus_tag="DHV98_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HCK05690.1"
                     /translation="MAKIRITKVRSDIKRPETQKRTLKALGLKKIGQTVEHEDTPTIM
                     GMVSKVNHLVSVETK"
     gene            8326..8769
                     /locus_tag="DHV98_04875"
     CDS             8326..8769
                     /locus_tag="DHV98_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HCK05691.1"
                     /translation="MDLSNLKPAEGSVKKEAKRVGRGQGSGKGGXXXKGAKSRSGYSK
                     KLGFEGGQMPLQRRVPKFGFKNINRKEYQGINLDTLQGLVDDKKIKDTVDFETLVVLG
                     LCGKNEMVKILGRGELKAKLNVTAHKFTGTAKAAIEAAGGTAETL"
     assembly_gap    8415..8424
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            8782..10125
                     /locus_tag="DHV98_04880"
     CDS             8782..10125
                     /locus_tag="DHV98_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HCK05692.1"
                     /translation="MKFFETLKNAYKIEELRDRIALTLGLLLVYRFGAQVVLPGIDAA
                     MLKDFAGRFDDGGIGGLLNAFTGGAFANASIFALGIMPYISASIVVQLMQIAIPYLQK
                     LQKDGESGRKKINQITRWLTIGICLVQAPSYLAGLPALGVPSEAFVMGQSALFYVSSI
                     TILVTGCVFAMWLGEKITDKGIGNGISILIMVGIIARLPLTFAQEFASRVFESNGGMI
                     MILIELGIWFVIILLSVLLVMAVRQIPVQYARRTASGAYEKNIFGARQFIPLKLNASG
                     VMPIIFAQAIMFVPSAVASLSESAFAQTIQANFSDIFGLWYNLVFGVLIIIFTYFYTA
                     ITVPTNKMADDLKRSGGFIPGIKPGTDTAEYLDRIMSQITLPGSIFLALIAIFPAFVV
                     KILGIQQGWALFYGGTSLLIMVGVAIDTMQQVNSYLLNRHYDGLMKTGKNRKSIA"
     gene            10125..10340
                     /locus_tag="DHV98_04885"
     CDS             10125..10340
                     /locus_tag="DHV98_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HCK05693.1"
                     /translation="MAKQAAIEQDGLIVEALSNAMFRVELENGHVVTAHISGKMRMHY
                     IKLLPGDKVKLEMSPYDLTKARITYRY"
     gene            10345..10461
                     /locus_tag="DHV98_04890"
     CDS             10345..10461
                     /locus_tag="DHV98_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014790280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HCK05694.1"
                     /translation="MKVRASIKKRSADCKIVRRKGRLYVINKKNPRFKQRQG"
     gene            10464..>10709
                     /gene="rpsM"
                     /locus_tag="DHV98_04895"
     CDS             10464..>10709
                     /gene="rpsM"
                     /locus_tag="DHV98_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCK05695.1"
                     /translation="MARIAGVDIPKQKRGVIALTYIFGVGKSRAQDILKKAGVSEDKK
                     VSEWNDDEIGAIREAVGSFKIEGELRSEIQLNIKRLMD"
     assembly_gap    10710..10859
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <10860..>10996
                     /gene="rpsM"
                     /locus_tag="DHV98_04900"
     CDS             <10860..>10996
                     /gene="rpsM"
                     /locus_tag="DHV98_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HCK05696.1"
                     /translation="NIKRLMDIGCYRGIRHRAGLPLRGQRTKNNSRTRKGKRKTVANK
                     K"
BASE COUNT         3433 a         1911 c         2569 g         2695 t
ORIGIN      
        1 aattcgtcga tatctctggt attaccaaag gaaagggatt ccaaggggtg gttaaacgcc
       61 acggatttgg tggtgtaggt caagcgactc acggtcagca taaccgatta cgcgctccag
      121 gttctattgg tgccgcgtcc tatccagccc gtgtattcaa aggaatgcgt atggccggtc
      181 agatgggtaa ttctaaagtg aaagttgaaa acttacgcgt gttaaaagta gttccagaaa
      241 agaannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngttccaga
      481 aaagaactta cttgtggtta agggttgtgt gcctggacac aaaaacgctt atctaacaat
      541 tacaaagtaa tgaaggtagc agtattagat aaaaacggaa aagatacggg aagaaaggta
      601 gacctttcga aggacgtatt tggtattgag cctaacaacc acgcggtgta ccttgatgta
      661 aaacaatact tggcaaatca acgccaggga acccacaagg ctaaagaaaa ggccgagatt
      721 acagggagta cgcgcaagtt gaaaaaacaa aaaggaacgg gtacggcaag agctggaagt
      781 atcaagtctg gtttattcaa aggtggaggt cgtttcttcg gtcctcgccc gcgcaactac
      841 ggatttaaac tcaataaaaa cttgaagcgc ctggcacgtc gctcggcttt aagtatgaaa
      901 gcgcaaaaca aagcgatctt agttttggaa gacttcaata tggaggcgcc taaaacaaaa
      961 gagttcacgg ctttattgca gtcacttggt ttagaaaaca aaaaatcttt gttcgtcttg
     1021 ggtgactcga ataataatgt atatttgtcg tcgcgtaatt tgcgaggcac tgaggtgata
     1081 aataactcag aattaagcac ttacaagata atgaatgcaa acagcctagt gttgtttgaa
     1141 ggttctttgg aaagtattga agaaaactta agtaaataga cacaagatga atatcttaat
     1201 taaacctatt attacagaga aagccacgcg caatgcggag gatttgaact gcttcacctt
     1261 tgtggtgaat ccaaaggcga acaagattga aatcaaaaat gcggtagaat ctgcatatgg
     1321 tgtttcagtt acttcagttc gcacaattaa tgtccgccca gatcgtcgtg ttcgttttac
     1381 gaagacgggg gttcagactg gtaaaacgac tgctgttaaa aaagcaatcg tacaggtggc
     1441 ggaaggtgat acaatagatt tttatgctaa tatctaaagt gatttagatt aataaagaca
     1501 aaaatgtcag taagaaaatt aaaaccaatc accccaggac agcgatttag agttgtgaat
     1561 ggatttgacg ccattacaac tgataagccg gagaagagtt tgctcgctcc gaaaaaacgt
     1621 tcagggggaa gaaacagtca aggaagaatg accatgcgct atatcggtgg tggtcacaag
     1681 aagcgttatc gaattatcga tttcaaacgc gataagcacg gtattcctgc aaccgtagca
     1741 acaattgaat acgatccaaa ccgtacggca tttattgctc ttctgaatta ccaagatggt
     1801 gagaagcgtt atatcgttgc tcaaaatggg ttacaagtag gtcaaaatgt tgtttcaggt
     1861 gatggtgcgg ccccagaaat agggaacaca ctaaccttat ctcagattcc tttagggacc
     1921 attatttcat gtattgaatt acatccgggt caaggtgctg ttttggcacg tagcgctggt
     1981 gcttttgcac agttaatggc ccgtgaagga aaatatgcaa cagttaaatt gccttcaggg
     2041 gaaacgcgca tgatcttagt gacctgttct gcgactattg gtgctgtatc aaacagtgat
     2101 catcagttat tggtttcagg taaagccgga cgttcacgtt ggttaggtcg tcgcccacgc
     2161 actcgtgctg tggtgatgaa cccagtcgat cacccaatgg gtggtggtga aggacgttct
     2221 tctggaggac atccaagatc tcgtaagggg ataccagcta aaggttatcg cacgcgatct
     2281 aagactaaag cgagtaataa atacattgta gaacgtagaa agaaataagt catgccaaga
     2341 tcactaaaaa aaggacctta cgttcactat aagttagata aaaaagttac tgacaatata
     2401 gagtcaggca acaaatcggt aatcaaaact tggtcaagag cctctatgat tactccagat
     2461 tttgtcggac aaacgattgc agtacataac ggaaaacaat ttgttcctgt ctatgttaca
     2521 gaaaacatgg tgggccataa attgggtgaa ttttcgccga cacgatcatt ccgtggccat
     2581 ggtggaaaca agaacaaagg aaaaaaataa taagccatgg gagttcgtaa acgagaaaga
     2641 gcagaagaaa tcaaggaagc gaaaaaaaca cagtatttcg cgaaactgaa caattgcccg
     2701 acttcaccgc gcaagatgcg tttggttgcc gacttagttc gtggtgaaaa ggtgaatcac
     2761 gccttgaata ttttaaaatt tagtcaaaaa gaggcgtcac gtcgtcttga gaagttattg
     2821 ctttcggcta ttgctaactg gcaagccaaa aacgaagagg cttctttgga agacgctgat
     2881 ctttttgtaa aagagatacg tgtagatggc ggcagtatgc taaagcgtct gcgcactgca
     2941 cctcaaggac gtgcacacag aattagaaag cgttccaacc atgtaacttt ggtattagga
     3001 gctaacgata acacacaaag ctagaaagta aatgggacaa aagacaaatc caatcgggaa
     3061 ccgcttaggt atcattagag gatgggaatc caactggtac ggtggcaacg actacggcga
     3121 taaattagcc gaagacgaca agattagaaa atacgttcat gctcgtttga gtaaagctag
     3181 tgtgtctcgt gtaattatcg agagaacttt aaaacttgta accgttacta tcactacggc
     3241 tcgcccaggt atcattattg gtaagggcgg tcaagaggta gacaagctga aagaggaact
     3301 taagaaaatt acaggcaagg aagtacaaat taacatccac gaaattaagc gtccggaatt
     3361 agatgcattc ttggtagcgt cgagcattgc tcgtcaaatc gagaatcgta tttcttatcg
     3421 acgtgccatt aaaatggcca ttgcagcctc aatgcgtatg aatgcagaag ggattaaagt
     3481 gcagatttct gggcgattga acggtgctga aatggcgcgt tctgaagcct acaaggatgg
     3541 acgtattcca ttgtcgacat ttagagcgga tattgattat gctttagctg aagcccatac
     3601 gacttatggt cgtctaggga ttaaagtatg gatcatgaaa ggagaggttt atggcaagag
     3661 agagttgtcg ccattagttg gtctttccag taaaaaatcc ggtgttaaag cgaattctgg
     3721 acgcggcgca aacaaagccc gacgtaacag aaagtaattt tttaaagacg aaagaagatg
     3781 ttacaaccaa aaagaacaaa gtttcgtaag accatgaagg gtcgcatgaa aggaaatgcg
     3841 ggccgaggca atcaattatc gtacgggact tttggtatta aatcactaga ctcaaatttc
     3901 ttgacagcac gtcaaatcga ggctgcgcgt atcgcagcaa cacgtttcat gaaacgtgaa
     3961 ggttcgattt ggatcatgat tttccctgat aagccgatca ctaaaaagcc tcttgaggtt
     4021 cgtatgggta agggtaaagg agctgtagaa tattgggcag ccgtagttaa accagggcgc
     4081 gtcttgtttg aggtgtctgg agtgccacta gaaactgcaa aggaagcttt gcgtttagcg
     4141 gctcaaaaac ttcctgtaca aacgaagttt gtcatttcca gagattatca agcataattt
     4201 attgacattg tcactatgaa acaatcagaa ataacaaaag catcaacagc ggaattagaa
     4261 gagaagctgg ctgaaatcaa aaaagagcat accgatttgc gtattgccca tgccatctct
     4321 ccgttggaaa atccaattcg actcagaggg cttagaaaag ctgtagcgag aattgcgact
     4381 gaactaacta aaagagaagt acaataattg tgcgccactg aaacatggaa aaaagaaact
     4441 taagaaaaga acgaatcggg gtagtgacca gcaacaaaat ggaaaagtcc atcgttgtga
     4501 gcgaggttaa aaaggtaaag cacccgatgt acggaaagtt cgtgttgaag accaaaaagt
     4561 atgtcgcgca cgacgaaaaa aatgactgca acgaagggga tactgttcgt attatggaga
     4621 ctcgtcctat gagcaaaacc aaatgttgga gactagtaga aattatcgaa agagctaagt
     4681 aatcatgata caacaagaat caagactaaa agtagctgat aataccggag ccaaagaagt
     4741 tctttgtatc cgagtgttag gcggtaccaa aagacgttac gcctcaatag gggataagat
     4801 agtggttact gtaaaagaag caacaccaaa cggaaatgtc aaaaagggaa gcgtttcaac
     4861 tgctgtagta gtgcgtaccg taaaggaggt acgtcgtcct gatggatcat atatccgttt
     4921 tgatgataac gcttgtgtcc tattgaatcc tcaaggggaa atgagaggga cacgtgtttt
     4981 tggtccggtt gcccgtgagc ttcgtgacaa gcagttcatg aaaattgtat cattagcacc
     5041 tgaggtgctt taacgcaaaa ccatatggaa aagctaaaga taaaatcagg ggaccttgtg
     5101 ttggtgaccg ctggagacca caaaggcagc gaaggaaaag tacttcgcgt actcaaggat
     5161 aaaaataaag caatcgttga aggggttaat cttgtgaaaa aacaccaaaa gcctagcgca
     5221 gccagtcctc agggtggaat cactgaaatg gaagcaccta ttcacctatc taatctatcg
     5281 atcaaggatc ctaaatcggg tgaagccacc cgtgttggat ttaaaatgga aggggataaa
     5341 aaagtccgat ttgctaaaaa atcgaatcaa gtattatagt tatgggatat acgccaagac
     5401 tgaaagaaga atacaagagc agagtaataa ctgccttgac cgatgagttc ggttacaaca
     5461 acgttatgca agttcctaaa ctcgagaaaa tagttgtttc tcgtggtgtt ggaagtgctg
     5521 tagcggataa gaagctcatc gagtactcag tagatgaatt gactaaaatc gctggccaaa
     5581 aagcggtggc gacaatttct aagaaggacg ttgcgacgtt caaactgaga aaagggatgc
     5641 caattggcgc aaaggtcacc ctacgcggag agcgtatgta tgaattcttg gatcgtttga
     5701 tcacttctgc attgcctcgt gtacgcgatt tcaatggaat caaatcaaca gggtttgatg
     5761 gtcgtggtaa ttattcttta ggaataaccg aacagatcat ttttccagaa attgatattg
     5821 ataaggtcaa gaaaattgaa ggaatgaatg taacttttat tacttcggct catactgacc
     5881 aagaagctaa atcattatta acccagttgg gattaccatt taaaaagaac taagatggct
     5941 aaagaatcga tgaaagcccg cgaggtgaaa agagcaaaaa cggtagcaaa atacgccgct
     6001 aaaagaaagg ctttgaaaga agctggagat tatgaggctt tgcaaaaatt accaaaaaat
     6061 gcatctccag tccgcatgca caaccgttgt aaattaacgg gtcgcccaaa gggttacata
     6121 agaacattcg gattgtcacg tgtgatgttc cgtgaaatgg caaatcaagg attaatacca
     6181 ggagtgcgta aagcaagctg gtaagattat ataaaccggg tgcaggtttc gcaaatcgga
     6241 aaaccacatc cataacaaat agaaaatgaa cacagatcca attgcagatt ttttaacacg
     6301 cgttagaaat gcaagtcttg ctggtcatcg cgttgtcgag gtgcctgcgt caaacattaa
     6361 aaaggagatc acaaaaatcc tttttgatca aggttttatt ttgagctata agttcgaaga
     6421 agggagcaat cctcaaggaa caattaaaat agcgttgaaa tacgacagaa tcactaaaga
     6481 acctgtaatc cgtcgtttag tgcgtgtgag tactcctggt ttacgtcaat acgttggcgc
     6541 caaggatatg ccacgtgttt taaatggttt gggaattgcg attatctcta cctctgctgg
     6601 ggtgatgaca ggaaaacaag ccaaagccca aaataccggt ggagaagtac tgtgttatgt
     6661 tcattaatct aaataagacc aagaaatgtc acgaatagga aataatcccg ttgcgattcc
     6721 agaaggtgtc actgcagaag tgaacggtca ggtaattact gtcaaaggga aattaggtga
     6781 gttaactcaa gaatttgatg cagtgtctat cgctgttgag gagggtcaag tatgggtaac
     6841 acgtccatca gacgcaaaag atcaccgtgc caagcacggc ctttaccgct cgttagtcaa
     6901 caatatgatt aaaggtgttt ctgccggctg gtccaagcaa ctagaattgg ttggtgttgg
     6961 gtaccgtgcg agcaaccaag gcaacaaatt agatttggct ttaggatact ctcataacat
     7021 cgtattggat atcgctccag gggtgattgt tgagaccgtt tctgataaag ggaaaaaccc
     7081 gatagtaaag ttaacctctc acgataaaca acttgtcggt caagtagcgg ccaaaatccg
     7141 cagcttccgt aagcctgagc catacaaagg aaaaggtatc aagtttgtcg gtgaaataat
     7201 tagaagaaaa gcaggtaagt ctgcataatc atagagttat ggcattatcc aaagaagaaa
     7261 gaagagagcg tattcgcttt cgtattagaa aaatcgtaag tgggaatgca cagcgcccaa
     7321 ggttggccgt attccgcagc aataaagaaa tttatgctca actcattgat gacctatctg
     7381 gagttactct cgcagcagct tcgtcaagag ataaggatat tgatgcggca agtaccaaca
     7441 agagtgaagc cgcaaagctc gtaggtcaaa gtgttgctct aaaagccttg aaggctggag
     7501 tgacagaagt gactttcgat cgcggtggat acttgtatca cggtagagtt aaatcattag
     7561 cagacggtgc gcgcgaaggc ggcttaaaat tctaaaaata tgtatcaaga ttataaaaac
     7621 gtagaactag ttaagccggg cggactcgaa ttgaaggatc gtttggtcgg ggtacagcgt
     7681 gtaaccaaag tgaccaaagg tggacgtgct tttggattct ctgcaatcgt tgttgttgga
     7741 gatgaaaaag gagttgtcgg acacggttta ggaaagtcaa aagatgtggc cagtgctata
     7801 gcaaaggcga tcgaggatgc taagaaaaat ttggtgcgta tcccattgaa taaagcgact
     7861 ttgcctcacg aacaaaaagg taagtatggc ggtgctcgtg tgaacttact tcctgcagcg
     7921 gcaggtactg gagttattgc cggtggagct gttcgtgctg tgttggaagc cgtaggggta
     7981 cacgacgttt tgtcgaagtc tcaagggtca tcaaatccgc acaatgtggt aaaggcaact
     8041 tttgatgcct tgcttcaatt gcgcagtgca gagaccgtgg cgaaacaacg tggcattact
     8101 atggataaat tatttaaagg ttaatcaaac agttatggca aagatcagaa tcacaaaggt
     8161 gcgcagtgac attaaacgtc ctgaaaccca gaaaagaacg ctcaaggccc ttggcttgaa
     8221 aaaaatcggt cagactgtag agcatgaaga taccccaaca attatgggta tggtaagtaa
     8281 agttaatcac ttggtttcag ttgaaaccaa ataagagata caggaatgga tttaagtaat
     8341 ttaaaaccag ctgaaggatc agttaaaaaa gaagctaagc gcgttggacg cggacaaggt
     8401 tctggtaaag gtggnnnnnn nnnnaaagga gcgaaatctc gttcaggata ctctaagaaa
     8461 cttggttttg aaggaggtca aatgccattg caacgtcgcg tgccaaagtt tgggttcaag
     8521 aacatcaacc gtaaagagta ccaaggaatt aacttggata cgcttcaagg tcttgttgac
     8581 gacaaaaaga ttaaagacac tgtagatttt gaaaccttag tcgtcctagg tctttgcggt
     8641 aaaaatgaaa tggttaaaat tttagggcgc ggggagctta aagctaagct aaacgtcacg
     8701 gctcacaaat ttaccggaac agcaaaagcc gctattgaag ccgcaggagg aacagcagaa
     8761 accctataat caaccagagg aatgaagttt tttgagacat taaaaaatgc ctataaaatt
     8821 gaagagctgc gcgatcgtat cgccttgact ttaggtttgc tgttggttta tcgatttggc
     8881 gctcaagtag tattgcctgg aatcgatgca gctatgctta aagattttgc tggtcgattt
     8941 gatgatggtg gtatcggggg tctacttaat gcatttacag ggggagcttt tgctaatgct
     9001 tctatatttg ccttaggaat catgccttac atatcagcgt ctattgttgt acagttaatg
     9061 caaatcgcta ttccttacct tcaaaagctt caaaaagatg gagaaagtgg tcgtaaaaaa
     9121 atcaatcaaa ttacccgttg gttgaccatc ggtatctgtt tggtccaagc gccgagttac
     9181 ttagcaggtt tacctgcctt aggagtgcct tctgaagcct ttgtaatggg tcaatcggcc
     9241 ttgttttacg tgtcgtcaat taccatcttg gtaacgggat gtgtattcgc gatgtggctt
     9301 ggagagaaga ttacggataa gggaattggg aatggtatat cgatccttat tatggtggga
     9361 atcattgccc gtttgccttt gacctttgct caagaatttg cttctcgagt ctttgaatcc
     9421 aatgggggga tgatcatgat cttgatcgag ttggggattt ggtttgtaat cattttgctt
     9481 tctgtacttt tggttatggc agtgcgccaa ataccagtgc aatatgcccg tcgtacggct
     9541 tctggagcct atgaaaaaaa tatttttggg gcgcgtcagt ttatcccgtt gaagctcaac
     9601 gcttcaggag taatgccgat cattttcgca caagcgataa tgtttgtccc ctctgctgta
     9661 gcgagcttat ctgagagtgc ttttgcacag acgattcaag ctaatttcag tgatattttt
     9721 ggtctttggt ataatctagt gtttggtgtc ctgatcatca tcttcaccta tttctacacg
     9781 gcgattactg taccaacaaa caaaatggca gacgacctca aacgcagtgg gggatttatt
     9841 cctggaatta aaccgggaac ggatactgct gagtatttag atcgtatcat gtcacaaatc
     9901 actttaccag gatcgatatt tttagcactt attgcaatat tccctgcgtt tgttgttaaa
     9961 attttaggga ttcagcaagg ttgggctctg ttttacggag ggacttcctt attgattatg
    10021 gttggtgtag ccatagatac aatgcaacaa gtgaattcat atttgttaaa tcgtcattat
    10081 gatggtttaa tgaaaacagg taaaaatcgt aaatcaatag cataatggcc aaacaagcag
    10141 caatagagca agatggattg atagtcgaag ccctatccaa tgccatgttc cgtgtggaac
    10201 ttgaaaacgg tcatgttgtt acagcccata tctccggaaa gatgcgtatg cattatatta
    10261 agttgcttcc gggcgataag gtgaaattgg aaatgagccc ttatgattta acaaaggctc
    10321 gcataactta tagatactaa aacaatgaaa gtaagagctt ccattaaaaa acggagtgcc
    10381 gactgtaaaa tcgtacgcag aaaagggcgc ttgtatgtta ttaacaaaaa gaacccaagg
    10441 tttaaacaaa gacaaggata attatggcaa gaatcgcagg tgtagatatc ccgaaacaaa
    10501 aaaggggtgt aatcgcgtta acgtatatct ttggagtggg caagagtcgt gctcaagata
    10561 tcttaaagaa agctggtgtc agtgaagaca aaaaggtcag cgagtggaac gatgatgaaa
    10621 tcggtgccat tcgtgaggct gtagggtcat tcaagatcga aggcgagtta cgtagtgaaa
    10681 ttcaattgaa catcaagcgt ttgatggacn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna
    10861 acatcaagcg tttgatggac atcggttgct acagaggtat tcgacacaga gctggactcc
    10921 cgcttagagg acaacgcact aagaataact ccagaaccag aaaaggaaaa cgtaaaacag
    10981 ttgctaacaa gaaaaa
//
LOCUS       DPUP01000137            3990 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12033,
            whole genome shotgun sequence.
ACCESSION   DPUP01000137 DPUP01000000
VERSION     DPUP01000137.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3990)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3990)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1218)
                     /locus_tag="DHV98_04905"
     CDS             complement(<1..>1218)
                     /locus_tag="DHV98_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05697.1"
                     /translation="VPAGNYTTKAGLIERARAGENNIIWPTPIKWFAKSSGTSNAKSK
                     FIPVSPEALEDCHYAASKDLLCVYLHNHPESQLFVGKNLRLGGSKKLYEDKGTVYGDL
                     SAILIDNMPFWAEYSSTPSNEVSLLADWEVKLHAIVQETIKERVSSLAGVPSWMLVLL
                     NEVLATTGAAHLHEIWPQLEVYFHGGVNFDPYKDQYKNLLPKSDFRYYEIYNASEGFF
                     ALQDQSNSDELLLMLDYGIFYEFIPMDTYDTDQQKVIPLHQVEIGKNYAVVITTNAGL
                     WRYIIGDTVRFTNLTPYRIKITGRTKHHINVFGEELIIENAEEALRIAARVQEAEIVD
                     YTAGPIFMEGKTKGAHQWLIEFKTPPKNLEVFGQILDKALQDLNSDYEAKRAGNITLN
                     PPQIVSVRPKLFYD"
     assembly_gap    1219..1334
                     /estimated_length=116
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1335..1538)
                     /locus_tag="DHV98_04910"
     CDS             complement(<1335..1538)
                     /locus_tag="DHV98_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05698.1"
                     /translation="MPIPIVNSIASWFLKKRIHQMELFFKYPHEVQDELLMYLIQKGK
                     NTEFGKTYGFEGIKNYEDFARNVP"
     gene            1580..2368
                     /locus_tag="DHV98_04915"
     CDS             1580..2368
                     /locus_tag="DHV98_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008992142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2797 domain-containing protein"
                     /protein_id="HCK05699.1"
                     /translation="MEFQGVLRKMATQIGAPIQYYLVLGDHPINMNQLLDQSLSLGFV
                     GYECLNCGSDAPIFRQGFCKSCFFEAPQAADWIIRPELSQAHLGIEDRDLAYEQKMQL
                     QPHVVYLANSSNVKVGVTRLSQVPTRWIDQGAHEALPIVEVPNRYLAGIAEVALKDHV
                     ADKTNWRTMLKNEIEDVDLAAWQQKLISFLPEEVRPYVTNAQETHLEFPVLKYPEKPK
                     SLNLGKTPNYTGTLKGIKGQYLIFEDDTVFNVRSNEGLIVTLSV"
     gene            complement(2394..3089)
                     /locus_tag="DHV98_04920"
     CDS             complement(2394..3089)
                     /locus_tag="DHV98_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05700.1"
                     /translation="MTAKDKTLAMHIYIILGALFICSLVVSNLIFQKFFYWDFFGLYT
                     FEISVGILPYPITFLITDLISEIYGKKMANRVVTAGIFASVFSLLIVSAGQVVPATDW
                     SPIDDGLFDQVFGATVLAVLASMIAYLLAQYIDIHLYHFWKNLTKGKHLWLRNNFSTF
                     LSQFVDTASVLFLLCVFGKIDWALFGGLLLSGYLFKVIIAACDTPFMYLGVALFRKRF
                     KMEQHQEIDLSYS"
     gene            3218..>3990
                     /locus_tag="DHV98_04925"
     CDS             3218..>3990
                     /locus_tag="DHV98_04925"
                     /inference="COORDINATES: protein motif:HMM:PF01288.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HCK05701.1"
                     /translation="MGHLQKALDLLFQRVGHVVHVSRVYQSPSMGFTGEDFLNAVAYL
                     QTDRAPASVMQELLSIERDLGRQRVASGSQTQPSAEGTAQSDERHYSSRTIDLDLLAY
                     GDLIQESSDLILPHPRIQNRLFVLQPFMDVAPEWVHPELGLNLTELLAQCPDSDPPKP
                     IAQWLKNPLSAYDFTALRYLAIEGNIGAGKTSLAQMIARDFNGKLILERFADNAFLPQ
                     FYQDPERYAFALEMSFLADRFQQLAEQSAQYDLFSDLIIT"
BASE COUNT         1045 a          868 c          918 g         1043 t
ORIGIN      
        1 gtcgtaaaat agtttggggc gaactgaaac aatctgcggc ggattcaaag taatgttgcc
       61 agcgcgcttg gcctcgtagt cggagttgag atcttgtaaa gccttatcga gaatctgacc
      121 aaagacctct aggttttttg gcggcgtttt gaattctatc agccactgat gtgctccttt
      181 ggttttcccc tccataaaaa tggggcctgc cgtgtaatcg acgatttcgg cttcttgaac
      241 acgggcggca atacgcaaag cttcttccgc attttcgata atgagttctt caccaaagac
      301 gttgatgtga tgtttggtgc ggcctgtgat ctttatacgg taaggggtaa gattggtaaa
      361 gcgcacggta tctccaataa tgtagcgcca aagccccgca ttggtggtaa tcactacggc
      421 atagttttta ccgatttcaa cctgatgcaa agggatgact ttttgctggt cggtgtcata
      481 ggtgtccatg gggataaact catagaatat cccgtagtcc agcatcaaaa gcagttcgtc
      541 tgagttgctt tggtcctgca gggcaaaaaa tccttcggag gcgttgtata tttcgtaata
      601 cctaaaatcc gatttgggca aaagattttt gtactggtct ttataggggt caaagtttac
      661 cccaccgtga aaatagacct cgagttgtgg ccaaatttca tgtaaatgcg ccgccccggt
      721 ggtggctaaa acttcgttga gcaaaacgag catccatgac ggcacacccg ccaagctcga
      781 aacccgttct tttatcgttt cttggacgat ggcatgaagc ttgacttccc aatcggcaag
      841 taagctcact tcattgcttg gggtactgct atattcagcc caaaaaggca tattgtcaat
      901 caagatcgcg gaaaggtctc cataaaccgt ccctttgtct tcatagagtt ttttacttcc
      961 tccgaggcgt aaatttttac ccacaaaaag ttgggactcc ggatggttgt gcagatacac
     1021 gcagagtaaa tctttactag cggcatagtg acagtcttcg agcgcctcag gactcacagg
     1081 aataaatttg cttttggcat ttgaggtccc gctggacttg gcaaaccatt tgattggggt
     1141 aggccaaata atattgtttt cgccagcacg cgcccgttca ataagcccgg ccttggtggt
     1201 gtaattaccc gcgggcacnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1321 nnnnnnnnnn nnnngggcac gttgcgcgca aaatcctcat aattctttat cccctcgaaa
     1381 ccgtaggtct taccaaattc ggtgtttttc cctttttgaa tgagatacat caggagttca
     1441 tcttgaacct catgagggta tttgaaaaat aattccatct gatgaatcct ttttttgaga
     1501 aaccatgaag cgatggaatt gacgatcgga attggcatat ttaccctatc tttaagggct
     1561 aaaattacca cttttttaca tggaatttca aggggttttg agaaaaatgg ccacgcaaat
     1621 tggcgcaccg attcagtatt atttagtctt gggggaccac cccattaaca tgaatcaatt
     1681 attagatcag tctctatctc ttggttttgt aggttatgag tgcctgaatt gcggaagtga
     1741 tgccccgatt tttcgccaag gcttttgcaa gtcttgtttt tttgaggcgc ctcaggcggc
     1801 tgattggatc attcgccctg aactcagcca ggcgcatttg gggatcgaag atcgggattt
     1861 ggcctacgaa caaaagatgc aactccagcc tcatgtagtt tatttagcaa acagcagtaa
     1921 tgtcaaggtg ggggtgaccc gtctgagtca agtaccgaca cgttggatcg atcaaggggc
     1981 ccatgaagcc ttgcctatag ttgaggtgcc caatcgttac ttagcgggca tcgccgaagt
     2041 tgcccttaag gatcatgtag ccgataaaac caattggcgc accatgctca aaaatgaaat
     2101 tgaggatgtg gaccttgcgg cttggcagca aaaactcatt tcttttttac ctgaagaagt
     2161 gaggccctat gtgaccaacg cccaagagac tcatctcgaa tttccagtac tgaaataccc
     2221 ggaaaagccc aagtccctta atttgggcaa aacgcccaat tacaccggca ccctaaaagg
     2281 catcaaaggt caatacctaa tctttgaaga cgacacagtc tttaatgtgc gcagtaacga
     2341 gggcttgatc gtgaccttgt ctgtttaaaa aaacaaagtg ctcagtctgt tgtttaggag
     2401 taactcaaat caatttcttg atgttgctcc attttgaagc gcttgcgaaa cagggcgact
     2461 cccagataca taaacggcgt gtcacaggct gcgatgatga ctttgaacaa ataaccgcta
     2521 agcagcagtc caccaaaaag ggcccagtcg attttaccaa aaacacagag caaaaataaa
     2581 accgaggcgg tatccacaaa ttgtgacaaa aaggtcgaaa aattattgcg cagccacagg
     2641 tgcttgcctt tggttaggtt tttccagaaa tgatagagat gaatatcgat atattgcgcc
     2701 agcagatagg caatcatcga ggccaaaacg gccaaaactg tcgcgccaaa aacttgatca
     2761 aaaagcccgt catcaattgg gctccagtcg gtagcgggga ccacttgtcc cgcactgacg
     2821 atgagcagtg aaaaaactga ggcaaaaata cccgcggtca ccacgcgatt ggccattttt
     2881 ttaccgtaaa tctcactgat caggtcggta atgagaaagg tgatcgggta cggcaaaata
     2941 cccacagaaa tctcaaaggt atagaggcca aaaaagtccc aataaaagaa cttttgaaaa
     3001 atcagattgg acaccacaag agagcaaata aagagcgccc caagaatgat gtaaatatgc
     3061 atggccaggg ttttgtcttt tgcggtcatg gtgttttttt gattaaaccc gcagggattc
     3121 cccgccagtt gattattttc gcttcaagta aaagtaatcg attatcgagc cactacaaaa
     3181 tatttatatc ggtctgggca gtaacctcgg ggatcgtttg gggcacctgc aaaaggccct
     3241 cgatttgtta tttcagcggg tgggtcatgt ggttcatgta tcgcgggttt atcaaagtcc
     3301 gtccatgggc tttacggggg aggattttct caatgcggtg gcttatctgc agaccgatag
     3361 ggctcctgcc tcggtaatgc aagaattact gtcgattgaa cgagacttgg ggcgccaacg
     3421 tgtggctagc ggaagtcaaa cccagcctag cgcagagggc actgcccaaa gcgacgaacg
     3481 ccattacagc agccgaacca ttgacttgga tcttttggcc tacggtgatt tgatacagga
     3541 aagttctgat ctgatcttgc cgcaccccag aatccaaaat cgcttgtttg ttttgcagcc
     3601 gtttatggat gttgccccag aatgggtgca tcctgaatta ggtctgaacc tgacagagtt
     3661 gcttgctcaa tgtcccgaca gcgatccacc aaaacccatc gcacagtggc ttaaaaatcc
     3721 gctgtcggcc tatgatttca cggcactgcg ttatttggcg atagaaggca atatcggcgc
     3781 gggaaaaacc tctttggccc aaatgattgc ccgtgatttc aacggaaaat tgattttgga
     3841 acgctttgcg gataatgctt ttttgcccca gttttatcag gatccagagc gttacgcctt
     3901 tgctttggaa atgtcttttt tagcggatcg atttcagcaa ttggctgagc aaagcgccca
     3961 atacgattta tttagtgatt taatcattac
//
LOCUS       DPUP01000138            4779 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_27466,
            whole genome shotgun sequence.
ACCESSION   DPUP01000138 DPUP01000000
VERSION     DPUP01000138.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4779)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4779)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4779
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..440)
                     /locus_tag="DHV98_04930"
     CDS             complement(<1..440)
                     /locus_tag="DHV98_04930"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05702.1"
                     /translation="MKLGIKLVLWILIIFLGYKLYNSIIGPVHFNQTKEKRYIAAIAK
                     LKDIKAGQLAYQELNGKFTANFDSLVQFLDTAQFAITARRDTSYADVARNRAFGLDPQ
                     KGGYYIEDVIIDTLSFASIKDSIYPGSNRYATMMNIPDTDQKFE"
     gene            564..1988
                     /locus_tag="DHV98_04935"
     CDS             564..1988
                     /locus_tag="DHV98_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HCK05703.1"
                     /translation="MTVTEFEKALTNALEHNPTPGQEQAILSLSEFCVRRDPQAIFLL
                     TGYAGTGKSTLIAGLVQTLGQFKRSSVLMAPTGRAAKVISQYSHREAFTIHRKIYVPR
                     SQKGGGVKFALQPNKHRNTLFIVDEASMVPDTNTDANVFEGSSLLDDLMTYVYSGPGC
                     QLMFVGDLAQLPPVHLNLSPALDSDVLRIQFHKSVTEVALREVVRQKEQGDIVSNATS
                     IRELIEQDRPEQLFFDLGNQDEVIRPFGGNEVLEALEEAFSKDNLDQAVVIVRSNKRA
                     NLYNQEIRQRILFRDEGLCVGDILMVVKNNYFWLKPADSAGFIANGDVIEVLEIFEFV
                     SIYGFDFTKVRVRMLDYPSQPPFNTVLILDTISSDASSLTYEQSNALYQAVREDYPEI
                     TANYKKFLAVKNNPYFNALQVKYSYAITCHKSQGGQWDRVFVEQPYLKEGVNKEYLRW
                     LYTAMTRAKNRLYLLGFSKEYFDQ"
     gene            2083..3657
                     /gene="kdsB"
                     /locus_tag="DHV98_04940"
     CDS             2083..3657
                     /gene="kdsB"
                     /locus_tag="DHV98_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008991813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HCK05704.1"
                     /translation="MKIIAMIPARYGASRFPGKLMQDLGGKPVIVRTYEAAKATGLFD
                     AVYVVTDSDVIFKEIEWHGGQAIMSQKEHDCGTDRIAEAVAEMDVDIVVNVQGDEPFT
                     SKEGLAQVLSVFDAPDADRIDLASLMTEIQDWREISDPNAVKVVVDKENYALYFSRSP
                     IPYPRDKNTAVQYFKHKGIYAFRKQALLDFYNLPMTILEATEKIECIRFLEYGKRIKM
                     AISNTQGIEIDTPEDLVRANKVLKEEKRLPINNKYRNFPMVPKVVYGKGCFEQLASII
                     GPQRKEKAPFIYLVDDVFQNNQELLKRIPLRFNDKLLFISSFEEPKTEQVDVLVKSIK
                     TEFSYRPSGIIGLGGGSILXXAIMLTNKGQASEYQGWDLVKNKAVYHVGIPTISGTGA
                     EVSRTTVLTGPEKKLGINSDFTPFDQVVLDPELTTGVPKDQWFYTGMDCFIHCVESLN
                     GTFLNEFSKSYGEKAYDLCKEIFLNPELDDDTAREKLMMASWHGGMSIAYSQVGVAHA
                     MSYGLSYVLXXQLYRL"
     gene            3626..3886
                     /locus_tag="DHV98_04945"
     CDS             3626..3886
                     /locus_tag="DHV98_04945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05705.1"
                     /translation="MSXXGNCIVFDHLIDYYPFDVALFKEMKQAHGIELPQGICKDLT
                     ESQMDTMVKIALSLVPLWENALGSDWELKINADKLKALYAKM"
     gene            3894..4448
                     /locus_tag="DHV98_04950"
     CDS             3894..4448
                     /locus_tag="DHV98_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008615878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HCK05706.1"
                     /translation="MRFLAKIIFNKLLGWELQGTIDSSIKKCVIIVVPHTSSYDFIMG
                     LLIRSLLRLRINYLGKKELFTWPIGYYFRWTGGAPLDRTPGQNKVESIAKLFDQHKTF
                     RLALSPEGTRKKVDQWKTGFYYIATTAQVPIIPIALDYAKKEVRIGGVFQPTGSIEHD
                     LLILEKHFIGAVGYIPEYSWRKDA"
     gene            complement(4445..>4779)
                     /locus_tag="DHV98_04955"
     CDS             complement(4445..>4779)
                     /locus_tag="DHV98_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009414800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCK05707.1"
                     /translation="MFDHVCNFRIDSGEMDMEALELELIDFGVEEIFQDEDGCMIYAP
                     FESFGAIQTYLENNNLEILSSGFERIPQVTKTLSPEQVADVEKLLEKIEEDDDVQNVY
                     HTMSESED"
BASE COUNT         1349 a          968 c         1099 g         1356 t
ORIGIN      
        1 aattcgaact tctgatccgt atcaggaatg ttcatcatgg tggcgtaacg gttggaacct
       61 ggatagatcg agtctttaat tgacgcaaaa gaaagtgtgt cgatgatcac atcttcaatg
      121 taataacctc ctttttgagg atcaagacca aacgcacggt tgcgcgctac gtctgcataa
      181 ctggtatcgc gtcttgcagt gatggcaaat tgagccgtgt cgaggaattg aactaagctg
      241 tcaaaatttg cggtgaattt accattgagc tcttggtaag ccaattgacc tgccttaatg
      301 tcttttaatt tggcgattgc cgcaatgtat cttttttctt ttgtttgatt gaaatggacg
      361 gggccgataa tcgaattgta aagtttgtaa cccaagaaga tgataagaat ccaaagtacg
      421 agtttaattc cgagtttcat tgatctgatt taagttgaaa aaagggtctt tactaccatg
      481 acaaatctac aatatttttt tattcatgaa aggaaattgg caaaaaacct agctatattt
      541 gagcgtactt ttcccttgtt ttcatgaccg ttacagaatt cgaaaaagcc ttgactaatg
      601 cgttggaaca caacccaacc ccgggtcaag agcaggccat tttgtctctg tctgaatttt
      661 gtgtgcgccg agatcctcag gctatttttc tcttaaccgg ttatgcggga acaggcaaga
      721 gtacgctgat cgcggggctc gtgcagactt taggtcaatt taagcgttct agtgtgctta
      781 tggcgccaac gggtcgcgcg gccaaagtaa ttagccaata cagtcatcgc gaggccttta
      841 ctattcaccg gaagatttat gtgccgcgga gtcaaaaagg cggcggcgtg aaatttgcgc
      901 tgcaacccaa caagcatcgc aacaccttgt tcatcgtcga tgaagcctca atggtaccgg
      961 acaccaatac agatgcaaat gtctttgaag ggtcctcttt gctggatgac ctcatgactt
     1021 atgtttacag tggcccggga tgtcaactca tgtttgtggg cgatctggct cagttaccgc
     1081 ccgtacactt gaatttaagt cctgctttgg attccgatgt cttgcgcatt caatttcata
     1141 aatcggtcac agaggtcgcg ctcagagaag tagtccgcca aaaggagcag ggcgatattg
     1201 tgtcaaacgc cacgagcatt cgggagttaa tcgagcaaga ccggccagaa caattgtttt
     1261 ttgatctcgg caaccaagat gaagtcatac gcccatttgg cggaaacgaa gtgctggagg
     1321 cccttgaaga agccttttct aaagataatt tggatcaagc agtggttatc gtgcgctcca
     1381 acaaacgcgc caatttatac aaccaagaaa ttcgccagcg tattttattt cgcgatgaag
     1441 gcctttgtgt tggcgatatc ctgatggtgg tgaagaataa ttatttttgg ttaaaacctg
     1501 cagattctgc tggatttatt gccaatggag acgtcatcga agttctggag atttttgaat
     1561 ttgtgtcgat ttacggtttt gactttacta aagttcgggt acgcatgctc gattatccca
     1621 gtcaaccgcc atttaatacc gtactgattt tggacaccat cagcagcgac gcctcgagtc
     1681 tgacttatga gcagtcaaac gcgctctatc aggctgttcg tgaagattat ccggaaatta
     1741 cagccaatta taaaaagttc ttagcggtaa aaaacaatcc ctatttcaat gcactccaag
     1801 tcaaatacag ctatgcgatt acgtgtcaca aatcacaagg aggacagtgg gatcgcgtct
     1861 ttgtggagca gccgtatctt aaggaggggg taaacaagga atatttgcgt tggctctaca
     1921 cggcgatgac gcgggccaaa aaccgacttt atctgctggg cttttcaaag gaatattttg
     1981 accagtaaaa ccaaccaaaa cggcattttt gtatcttgag tttagtaatg tctgtttaat
     2041 cctttaaact tattattttt gacgcctaaa aaactacgac cattgaaaat tattgccatg
     2101 attcccgcgc gttacggcgc ctcaagattt cctggaaaac tcatgcaaga cttggggggt
     2161 aaacccgtga ttgttagaac atatgaggcc gcaaaagcca ccggattgtt cgatgctgtc
     2221 tatgtggtga ccgatagcga tgtcattttt aaagaaatag aatggcatgg gggacaagcc
     2281 atcatgagtc agaaagaaca cgattgcggt acggaccgca tcgctgaggc cgtggcagaa
     2341 atggatgtgg acattgtggt taatgttcaa ggtgatgagc cgtttaccag taaagaaggt
     2401 ctggcgcaag ttttgagcgt ttttgacgcc cctgatgcgg atcgaattga cttggcgtct
     2461 ttgatgaccg aaatacaaga ttggcgagaa ataagcgacc caaatgccgt aaaggttgtg
     2521 gtcgataaag aaaattacgc cctgtatttt tcacgcagcc cgattcctta ccctagagat
     2581 aaaaataccg ccgtccaata ttttaagcac aaaggtattt atgcttttcg caaacaagcg
     2641 cttttagatt tttacaatct gccgatgacc atactcgagg ccaccgaaaa aatagagtgt
     2701 attcgctttt tggaatacgg aaagcgcata aagatggcca tttccaatac ccaaggtatt
     2761 gaaatagata cgcctgagga tcttgttcgc gccaataagg ttttaaaaga agaaaagcgt
     2821 ttgccgatca ataacaaata ccgaaacttt cccatggtcc ccaaagtggt ctacgggaag
     2881 ggttgtttcg aacaactggc cagtattata gggcctcaac gcaaagaaaa agcgcccttt
     2941 atttatttgg tagacgatgt gtttcaaaac aatcaggagc tccttaagcg catccccttg
     3001 cgttttaacg acaagctcct atttatctcg tcttttgaag agccaaagac agagcaagtc
     3061 gatgttttgg taaaaagtat aaaaacagaa ttttcttatc gcccttcggg tattattggt
     3121 ctgggtggag gatctatatt aganntagcc attatgctaa ccaataaagg gcaagccagt
     3181 gaatatcaag ggtgggacct ggtgaagaac aaagcagtct accatgtagg catcccaacg
     3241 atttctggaa caggggccga ggtttcacgt acaacggtcc ttacggggcc agagaaaaaa
     3301 ttggggatta atagtgattt tactcctttt gatcaggtgg ttttagatcc agaactcacc
     3361 acaggtgttc ccaaagatca gtggttttat acgggcatgg attgctttat ccactgcgtg
     3421 gaatccctca acggaacgtt tttgaatgag tttagtaaaa gttatggaga gaaggcttac
     3481 gatttgtgta aagaaatctt cttaaatcct gagctcgacg acgatacggc tcgagaaaaa
     3541 ctcatgatgg cttcatggca cggtggcatg agcattgctt attctcaagt gggtgtggcg
     3601 cacgccatga gttatggctt atcttatgtc ctnnnnnggc aattgtatcg tctttgatca
     3661 ccttattgat tattatccat ttgatgtggc tttattcaaa gaaatgaaac aggcccacgg
     3721 tattgagctg ccgcaaggga tttgtaagga tttgactgaa agccagatgg atactatggt
     3781 taaaattgcc ttgagtttgg tccccttatg ggaaaacgcg cttggttcag attgggaatt
     3841 aaaaattaat gccgataaac tcaaggcgct ttacgccaaa atgtaattga tttatgcgat
     3901 ttttagccaa gattattttt aataagctat tgggttggga gcttcaaggc actatagatt
     3961 ccagcataaa gaaatgcgtg atcatcgtgg tgccacacac gagttcctat gattttatca
     4021 tggggctttt gatccgcagt ttattgcgct tgcgcatcaa ttatttgggt aaaaaggaat
     4081 tatttacttg gcccataggg tactattttc ggtggactgg tggtgctcct ttagaccgca
     4141 caccaggtca aaataaagta gaaagtatcg ccaaattgtt tgatcagcac aagaccttta
     4201 ggttagctct atcacccgag ggcacgcgaa agaaagtgga tcaatggaaa acgggattct
     4261 attacatcgc cacgacggcc caggtcccca ttattccaat cgcattagat tatgccaaga
     4321 aagaagttcg tattggcgga gtttttcagc ccacaggatc cattgaacat gacctcctta
     4381 ttttggagaa gcattttata ggcgcagtgg gctatatccc agaatattct tggagaaaag
     4441 acgcctaatc ttctgattca ctcatggtgt gataaacgtt ttgcacgtca tcgtcttcct
     4501 caattttttc tagaagtttt tccacgtcgg caacttgctc aggcgatagt gttttggtta
     4561 cttgaggaat acgttcaaac ccggatgaaa gaatctctaa attattgttt tcgaggtaag
     4621 tttgaatcgc accaaagctt tcaaaggggg cataaatcat gcagccgtct tcatcttgaa
     4681 aaatttcttc aacgccaaaa tcgatgagtt caagttccag cgcttccata tccatttctc
     4741 cagaatcaat acggaaatta cagacatggt caaacatga
//
LOCUS       DPUP01000139            3547 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14813,
            whole genome shotgun sequence.
ACCESSION   DPUP01000139 DPUP01000000
VERSION     DPUP01000139.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>439
                     /locus_tag="DHV98_04960"
     CDS             <1..>439
                     /locus_tag="DHV98_04960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine synthase"
                     /protein_id="HCK05708.1"
                     /translation="TFGLAPSLILLQMMQQAFYGRMRPLTDVFSARAWEVGLETYYPF
                     LALIVLIASAVRLARFNIDTRQTEQFIGLPTPANALLISSLPLIFEYHYTPLIAELLF
                     NKWFLIGITLFSVYALNAPWPLMSLKLKNTAWRENKQRILLVII"
     assembly_gap    440..501
                     /estimated_length=62
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(631..1371)
                     /gene="lptB"
                     /locus_tag="DHV98_04965"
     CDS             complement(631..1371)
                     /gene="lptB"
                     /locus_tag="DHV98_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017494919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HCK05709.1"
                     /translation="MKLRAEKLDKIYRGRSVVKNVSLEVNQGEIVGLLGPNGAGKTTS
                     FYMIVGLIKPNGGRIFLNDQDITTYPMYKRAQNGIGYLAQEASVFRKLSIEDNILSVL
                     QLTKLSKAEQEAKMESLIDEFGLQHIRTNRGDLLSGGERRRTEIARALATDPHFILLD
                     EPFAGVDPVAVEDIQRIVAQLKNKNIGILITDHNVQETLAITDRTYLMFEGSILKQGI
                     PEELAADEMVRKVYLGQNFELRKKKLHF"
     gene            complement(1421..1771)
                     /locus_tag="DHV98_04970"
     CDS             complement(1421..1771)
                     /locus_tag="DHV98_04970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HCK05710.1"
                     /translation="MGQSVEEFNAYRQRMNERLMQEDQKVIKRVFNLDTNAYMEGHLS
                     VKTKELLGLGNSLVLRCDDCVKYHLQTCFELGISKEEVMEAMSISLLIGGTIVIPHLR
                     RAVEFWDDLNGQTS"
     gene            complement(1776..2594)
                     /gene="tatC"
                     /locus_tag="DHV98_04975"
     CDS             complement(1776..2594)
                     /gene="tatC"
                     /locus_tag="DHV98_04975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HCK05711.1"
                     /translation="MAKALPNTEKDMSFLDHLEELRWHLIRATLAVVSMGFIAFLMKD
                     FIFDGIIFGPKRASFPTYQLLCRSAQALGLDSFCFTELPFRIQSRTMSGQFSAHIWTS
                     ITAGFIIAFPYVLYEVWKFVSPGLHENERKNAKGFIFVASVLFFLGVLFGYYVVTPLS
                     INFLGSYQVSDQVFNDFDLSSYIALVRACALSSGLIFQLPIVIYFLTKVGLVTPEWLK
                     KYRKYALVIVLIISAIITPPDIASQVIVSIPVLILYEISILIAKRVVKIQQKKR"
     gene            complement(2594..3547)
                     /locus_tag="DHV98_04980"
                     /pseudo
     CDS             complement(2594..3547)
                     /locus_tag="DHV98_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024914.1"
                     /note="frameshifted; too many ambiguous residues; internal
                     stop; incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="D-arabinose 5-phosphate isomerase"
     assembly_gap    2855..2938
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          907 a          772 c          763 g          959 t
ORIGIN      
        1 acatttggtc tggccccgag tttgatctta ctgcaaatga tgcaacaagc gttttatggt
       61 cggatgcggc cactaaccga tgtgttttcg gcccgagcat gggaggtggg gctggaaacc
      121 tattatcctt ttctggcgct tatcgtcctt atagcctcgg ccgttcgctt ggctcgattc
      181 aatatcgata cccgtcaaac tgagcagttt attggtttac cgacgcctgc caatgccttg
      241 cttatatcga gtcttccgct aatttttgaa tatcattata cgcctttaat cgccgaacta
      301 ttgtttaaca aatggttttt aattgggata accctattta gtgtttatgc cttgaatgcg
      361 ccttggccac tcatgtcgct gaaactaaaa aacacggcct ggcgagagaa caagcagcgg
      421 atcctattag tgattatcgn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn ngatcctatt agtgattatc gcccttgttg ggtttttcac
      541 cctgggctat ttggccattc cactggtgct cttaagttat atcggcctgt ccttgctctg
      601 gcccatgtcc aaagcatcat ctgtcgatgc ctagaagtgc aatttctttt tgcgcagttc
      661 gaagttctgt cctaaatata ctttacggac catttcatca gcagcaagtt cttcaggaat
      721 cccttgcttg aggatacttc cttcaaacat cagataggtt cggtcggtga tggccaaagt
      781 ttcctgaaca ttgtgatcgg tgatgagaat tccgatgttt ttatttttga gttgggccac
      841 aatacgttga atgtcctcga cagccactgg gtctacaccg gcaaagggct cgtcgagtaa
      901 gataaaatga ggatcagtgg ccaaggcgcg tgcaatttcg gtacggcggc gctccccacc
      961 actgagtaga tcaccgcgat tggttcggat atgttgtaag ccgaattcat caattaagga
     1021 ctccattttg gcttcttgtt ccgccttgct gagtttcgtt aattgtaaga cgctcaaaat
     1081 attgtcctcg atactgagtt tgcgaaaaac agaagcttcc tgggctaaat accctattcc
     1141 gttttgagca cgtttgtaca tggggtaggt ggtaatgtct tgatcgttta aaaagatgcg
     1201 cccaccattg ggtttgatca gtcctacaat catataaaat gacgtggttt ttccagcccc
     1261 gttagggcct aacaagccga ctatctctcc ttgattgact tctagggata cgttttttac
     1321 caccgagcgg ccacggtaaa tcttgtctaa tttttcagcg cgaagtttca tagaggttaa
     1381 tgctaggtga ccaattaaag cgaaggtaat aattatttta ctaggaggtt tgtccgttta
     1441 gatcatccca aaattcgacg gcgcgccgca gatgcggaat cacgatcgtg ccgccaatca
     1501 gcaacgaaat actcatggct tccataactt cttctttact tattcccagc tcaaaacagg
     1561 tttgcaagtg atacttaaca caatcgtcac agcgcaacac tagggagttc ccaaggccca
     1621 agagctcttt ggttttcacg gaaagatgac cttccatata cgcattggta tccagattga
     1681 atacgcgttt gatgaccttt tgatcttctt gcatcaaccg ctcattcatg cgctggcgat
     1741 aagcgttaaa ttcttctaca gattgcccca taagattatc gtttcttttg ttgaattttt
     1801 accacgcgtt tggcgatcaa aatactgatt tcatacaaaa tcaatacagg gatcgagacg
     1861 atcacttgac tggcgatatc cggcggtgta atgatggcag aaataatcaa tacgatgacc
     1921 aaggcgtatt tgcggtactt tttcagccac tctggagtca ctaggccgac cttggtcaaa
     1981 aagtagatga ctatagggag ttgaaaaatt aatcccgacg agagggcaca ggcgcgcacc
     2041 aaagcgatat aactgctgag gtcaaagtca ttaaagactt gatcgctgac ttgataagac
     2101 cccaagaaat taatggaaag cggcgtcacg acgtaatacc caaacaagac cccaagaaag
     2161 aagagtacag aggcgacaaa aataaaacct ttggcatttt ttctttcgtt ttcatgcaat
     2221 ccgggactga caaatttcca aacttcgtac aacacgtaag gaaaagcgat gataaacccc
     2281 gcggtaattg aggtccagat gtgcgcagaa aattgtccgg acatggtgcg gctttggatg
     2341 cgaaaaggca attcggtaaa acaaaagcta tccaatccaa gggcttgggc agaacgacat
     2401 aacaattgat aggtcggaaa actggcgcgt ttagggccaa aaataatccc atcaaaaata
     2461 aagtccttca tcaaaaaagc gataaacccc atggagacca ccgccagggt cgcacggatc
     2521 aaatgccaac gcaactcttc gagatggtcc aaaaaggaca tatctttttc tgtatttgga
     2581 agcgcttttg ccattagata atcccttctt tacttaaatt gtgaatatgc acaacccctg
     2641 tgtagcggcc attttcatga gcgagtatct gggtgatgcc atagcgatcc attaactcca
     2701 tggcctcaat ggccatggcg tcattatcga tgagcttggg atttttagtc atgatctctt
     2761 gagcggtaag tccagcgata ttgtctactt tactgagcat gcgtcggagg tctccatcag
     2821 ttatgattcc cactatttcg gctccatcaa ctacnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncc
     2941 atcaactacg gcggtgaccc cgagcagatt ctctgaaatt tcgacaataa cctttttaag
     3001 gtccgtgtca gggctgactt gtggacgaga gtttagggcg gttaaatcac tcacgcgcag
     3061 ataaagtttt ttacccaatg aacctcctgg atgaacccgg gcaaaatctt tactggaaaa
     3121 tccacggaga ttaagtaagg ccatggctaa ggcatctccc atgaccagtt gggcggtcgt
     3181 agaggtggtg ggggccaaat tattggggca ggcctctttt gccacataag catttaagac
     3241 aaagtcgctt tgctggccta aaaaggattc cttgtttgcc gtcaagccaa ttaatttatt
     3301 gccgctggcc ttaatcaaag ggactaagac ctttatctct ggggtattgc cacttttcga
     3361 tatgcagatt accgtatcat tttcttggat gatccccaag tcgccgtgaa tggcatcagc
     3421 ggcgtgcata aaaattgctg gggtgcccgt agaattcaaa gtggccacaa tcttggtcga
     3481 aatattggcg ctttttccaa tgcctgtaac gataactcga cctttagatt gaaaaatata
     3541 ggctacc
//
LOCUS       DPUP01000140            4868 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3254,
            whole genome shotgun sequence.
ACCESSION   DPUP01000140 DPUP01000000
VERSION     DPUP01000140.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4868)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4868)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4868
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..991
                     /locus_tag="DHV98_04985"
     CDS             <1..991
                     /locus_tag="DHV98_04985"
                     /inference="COORDINATES: protein
                     motif:HMM:PF02494.14,HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05712.1"
                     /translation="YVVGNKYYLSSYTAGMRVIDISGIATPGSLNESGYFDSFPSNNN
                     TSFSGVWNVYPFFSSGNININDIDNGFFMVRASVSGTDTTPPVAVCAPYTATLDTAGN
                     VTITGSNVDGGSSDNSGFYSTTVSPNIFSCADVGAPITVTLTVSDVAGNSSTCTTEVI
                     VVDNSPPTISCPGDMTDNPEPGSSFFTMPNYISAGGVVAADNCDVVSLTQTPPAGAQL
                     SLGSYTIVFEATDPSGNTNSCSFALTVEELGVNDYFAQGLSMSPNPASDFVRLSSTNG
                     TIDQIQLYSITGKTIDQGFSITTEGADFNVAGLQAGIYFVTINNAVTKKLIVR"
     gene            1020..2426
                     /locus_tag="DHV98_04990"
     CDS             1020..2426
                     /locus_tag="DHV98_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCK05713.1"
                     /translation="MKKFSFIIALLTSATMMAQFPCEGGSSFGFPCEGYFMQSKLYLS
                     QMSAGDGNDSWGWTDPTNGKEYALVGLDNGTAFIDISDPVNAIYLGKLATHTSPSIWR
                     DIKVYNNYAFIVSEAGGHGMQVFDLTRLRNVANPPETFTEDAHYNAFGSAHNIVINEE
                     TGFAYAVGTGTFNGGPHFINIANPLNPTPAGGYSDSGYTHDAQVIIYDGPDADYQGQE
                     IYVGSNENQVVIVNVTNKNNPQLISTINYGSVDYTHQSWLTEDRSFLLIGDELDENAF
                     GFNTRTIVANVADLDNPFYFFQYFGNIASIDHNGYVKGDRYYLANYSGGMRVIDISNI
                     ANQQMTEIGYFDTFPANDNVNFNGTWNVYPYFASGNIVISGEGGFTLVKSENFGLEDQ
                     DIQAFTMSPNPANDFVVLRSASTPINSIVVHNLLGQEVLSLNGFDQQEFNLDISHLNS
                     GVYMITINNLQTLKLVAE"
     gene            2452..>3210
                     /locus_tag="DHV98_04995"
     CDS             2452..>3210
                     /locus_tag="DHV98_04995"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05714.1"
                     /translation="MKRFLTSSIFSYLILGGVVIGCKSDDETPIITNPPAEFNGTLAW
                     VESFGGSGIDQATGVISTDDGAFMVVGSTYSNDGHFTGLKSTTDADYFLMRVRPDGGV
                     DWTKVYGGDDDELATGITKTSDGGYVLVGYSRSDNCFTGSNGGFHDYYILKVDAQGNE
                     IWCQNFGYPGSDQAQNIIETREGDLMVTGFFDVSASGGQGNDDRENAGTLHGVGEYWG
                     IKLDADGQFFWKRYFGGSNNDRSYNVMQTNDGGFV"
     assembly_gap    3211..3360
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3440..>3775
                     /locus_tag="DHV98_05000"
     CDS             3440..>3775
                     /locus_tag="DHV98_05000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05715.1"
                     /translation="MAWTRSFGGSEIDIAYDIATTLDGNFLIVGDARSNDQDVSTNYG
                     NADVWLIEIDPQGNLVWEKSLGGSMFDSAKDLLPMNDNLYCVTGSSRSNDVDVATNNG
                     ENDAWTVVVD"
     assembly_gap    3776..3883
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3948..>4312
                     /locus_tag="DHV98_05005"
     CDS             3948..>4312
                     /locus_tag="DHV98_05005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05716.1"
                     /translation="MNKIASKIAFTFLVTSFLFSGCKDNDDTPLAEVSPTFSFTHNWD
                     GVPIENADYETTTYINERGESLTLSKLVYLISDITFTDAQGTSFSAGDYNLVDAREGV
                     NLSFTPDVVIEEGTYNVSFT"
     assembly_gap    4313..4461
                     /estimated_length=149
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4462..4864
                     /locus_tag="DHV98_05010"
     CDS             <4462..4864
                     /locus_tag="DHV98_05010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05717.1"
                     /translation="YPDLNSADGGVWIVPMMLGGGYHYMKLEGKYLDTQSVPEEEVGF
                     AYHAIRANDNSTNPITLQDTSFTVDLGDVVIEEGTDIEVQMNVAEWFENPHTWNLYEL
                     YSMLMPNFNAQILMSENGANGVFSRDRKSVV"
BASE COUNT         1276 a          928 c         1024 g         1233 t
ORIGIN      
        1 ttatgtcgtg ggcaataaat attatttatc aagttacaca gccggaatgc gtgtgatcga
       61 tataagtggg attgcaaccc ccgggagtct caatgagtct gggtactttg atagctttcc
      121 gagcaataac aatacgagtt tcagtggtgt atggaatgta tatccgtttt tcagcagcgg
      181 aaacattaat atcaatgata tagacaacgg attctttatg gttcgtgcgt cggttagcgg
      241 tacagacacg acaccacctg tcgctgtgtg tgctccatat acagcaactc tagataccgc
      301 tggaaatgtc accattactg gaagcaatgt agacggtggt tccagtgaca atagtggttt
      361 ttattcaact acggtaagcc caaatatttt tagctgtgcg gatgttggcg ctccgataac
      421 cgttaccctt accgtgtctg atgttgctgg aaactccagt acgtgtacca ctgaagttat
      481 tgtcgttgac aacagccctc cgacaatcag ttgtcctgga gatatgactg ataatcccga
      541 acctggatct agttttttca ccatgccaaa ctatatttcc gcagggggtg tcgtggccgc
      601 agataattgt gatgtcgtaa gtcttacgca aacgccacca gctggagcac agctgtcttt
      661 ggggtcgtat accatcgttt ttgaggccac agatccttca ggaaatacaa acagctgtag
      721 ttttgcttta actgttgaag aattaggggt caatgactat ttcgctcaag gattgagtat
      781 gagcccaaat ccagccagtg attttgttcg cctaagttca accaatggca ctattgatca
      841 aattcaatta tattccatta cgggaaaaac catcgaccaa gggttttcaa ttaccactga
      901 aggtgctgat tttaatgtcg ctggacttca ggcaggaatt tactttgtca ccatcaataa
      961 tgcagtgact aaaaaattaa tcgttcgcta aaacacaaca cacgaccaaa aacaacggta
     1021 tgaaaaaatt cagttttatt atcgccctgc tcacttcagc gaccatgatg gcgcaatttc
     1081 cttgtgaagg tggaagttca tttggcttcc catgtgaggg ttactttatg caatctaaac
     1141 tctatttatc ccaaatgtcc gctggggacg ggaatgattc atggggctgg accgatccca
     1201 ctaatggcaa agaatatgcc ttagtcggtc tcgataatgg aacggcattt attgatattt
     1261 cagaccccgt taacgcgatt tacttaggaa aactagccac ccatacttct ccaagtatct
     1321 ggagagacat caaagtgtat aacaattatg cctttatcgt cagtgaagct gggggacacg
     1381 ggatgcaagt ctttgatttg acccgccttc gcaacgtggc taacccgcct gagacgttta
     1441 cagaagatgc gcattacaat gcctttggca gcgcccacaa tatcgtaatc aatgaagaaa
     1501 cgggctttgc ctatgccgta ggaacaggca cctttaatgg gggaccacat tttattaata
     1561 tcgctaaccc attgaaccca acccctgctg ggggttattc tgatagtgga tacacccacg
     1621 atgctcaagt cattatttac gacggccccg atgccgatta tcaaggacag gaaatctatg
     1681 tagggagcaa cgaaaatcaa gtggttatcg tgaacgttac caataagaat aatccacagc
     1741 ttatttctac aataaactat ggcagtgtag attacacgca ccaaagttgg ctaaccgaag
     1801 acagaagctt tttgctcatc ggagacgagc tcgatgaaaa tgcttttgga ttcaataccc
     1861 gtaccattgt cgccaatgtt gcggacttag acaatccgtt ttatttcttt caatattttg
     1921 gcaatatcgc ctcaattgat cacaatggtt atgtaaaagg agatcgctat tacctagcga
     1981 actatagtgg cggtatgcgt gttatcgata tttccaatat tgccaaccag caaatgacag
     2041 agataggcta ttttgatacc ttcccagcaa acgacaatgt aaactttaac gggacttgga
     2101 atgtttatcc ctatttcgcg agtgggaata tcgtgatttc gggagaagga ggattcactt
     2161 tggtaaaatc agaaaatttt ggtttggaag atcaggacat tcaagcattt accatgagcc
     2221 cgaaccccgc aaatgacttt gttgtattgc gcagtgccag caccccgata aattcaatcg
     2281 tagtgcataa tcttttaggg caggaagtgc tctctttaaa tggttttgat cagcaagaat
     2341 ttaatctaga tatcagtcat ttgaattcag gggtctatat gatcacgatc aataacctgc
     2401 aaacgctaaa gctcgtggca gaataacttt ttacccaaat ttgtcccact tatgaaacgg
     2461 tttctaacct catcaatttt ctcatatcta atcctgggag gggtggtgat aggctgtaaa
     2521 tcagacgacg aaacacccat tattactaat cctcctgcag aattcaacgg gaccctagcc
     2581 tgggttgaaa gctttggcgg cagtgggatt gaccaagcca caggagtgat aagcacagac
     2641 gatggtgcct ttatggtcgt tggctctacc tatagcaatg acgggcactt taccggctta
     2701 aaatcaacca cagatgccga ctatttttta atgcgcgtgc gcccagatgg tggtgtagat
     2761 tggactaagg tttatggtgg tgacgatgat gaattagcta caggaattac gaaaaccagt
     2821 gatggcggat atgtgcttgt cggttacagc agaagcgata actgttttac gggaagtaac
     2881 ggtggttttc acgactacta catactaaag gttgacgcgc agggcaacga aatttggtgt
     2941 caaaattttg gctacccggg gagtgatcaa gcccaaaata ttattgaaac tagagaaggt
     3001 gaccttatgg tgactgggtt ctttgatgtt tcagccagtg gcggccaagg gaatgacgac
     3061 agagaaaatg caggaacact tcatggcgtt ggcgaatact gggggatcaa actcgacgca
     3121 gatgggcaat tcttttggaa gcgctacttt ggcggaagca ataatgatcg cagctataat
     3181 gtcatgcaaa ccaatgatgg cggcttcgta nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 agaaagtgat gactttgaca ttaccgacag tagaggcagt tatgattatt gggctgtaaa
     3421 actaagcgct caaggtgatt tggcatggac caggtcattc ggtggaagtg aaatagatat
     3481 tgcttacgat atagccacaa cgctcgacgg aaattttctg atcgtcggag atgcccgcag
     3541 caatgatcaa gacgtcagca ctaactacgg caatgctgat gtttggctta ttgaaataga
     3601 cccgcagggt aatttagttt gggaaaaaag tttgggcggc agtatgtttg attcggccaa
     3661 agatctttta cccatgaatg acaatctata ttgtgtcact gggtcatcgc gaagcaatga
     3721 tgtcgatgta gcgacaaata atggtgaaaa cgacgcctgg actgttgtgg tcgatnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnaataaca atctttcatt
     3901 gacccatctt accataacga ttaacctaat attttttaaa ccaagccatg aataaaatcg
     3961 catcaaaaat cgcctttact tttctagtaa cttcattttt attttcaggg tgtaaagaca
     4021 atgacgacac ccccctggca gaggtcagtc cgaccttcag ttttacgcat aactgggatg
     4081 gtgttcctat cgaaaatgct gattatgaaa caacgaccta tatcaatgaa cgaggcgaat
     4141 cattgacctt gtcgaaactc gtgtatctca tctccgacat tacgtttacc gatgcccaag
     4201 gcactagttt tagtgcggga gattataatt tggtcgatgc ccgagaaggc gtgaatttaa
     4261 gttttacgcc cgacgttgtg atcgaagaag gaacctacaa tgtatccttt acnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4441 nnnnnnnnnn nnnnnnnnnn nctatcccga tctcaactca gccgatggtg gcgtttggat
     4501 tgtgcccatg atgttgggtg gtggttacca ttacatgaaa ctcgagggta aatacctcga
     4561 tacccaatct gttcctgagg aggaagttgg attcgcttac cacgctattc gtgcaaacga
     4621 taacagcacc aatcccatca cgctccaaga cacatccttt accgtagatt tgggcgatgt
     4681 cgtgattgaa gaaggaactg atatcgaagt gcaaatgaat gttgccgagt ggtttgaaaa
     4741 cccccatact tggaatttat atgagctcta cagcatgctc atgcctaatt tcaacgctca
     4801 aatcctgatg agtgaaaacg gtgctaatgg cgtatttagt agagatcgga agagcgtcgt
     4861 gtagggaa
//
LOCUS       DPUP01000141            4253 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7455,
            whole genome shotgun sequence.
ACCESSION   DPUP01000141 DPUP01000000
VERSION     DPUP01000141.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4253)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4253)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4253
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..1764)
                     /locus_tag="DHV98_05015"
                     /pseudo
     CDS             complement(1..1764)
                     /locus_tag="DHV98_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783279.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start and stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
     assembly_gap    519..539
                     /estimated_length=21
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1765..1860
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1861..2656)
                     /locus_tag="DHV98_05020"
     CDS             complement(<1861..2656)
                     /locus_tag="DHV98_05020"
                     /inference="COORDINATES: protein motif:HMM:PF02811.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05718.1"
                     /translation="MYLNTHTAFSLRYGLMPPRVLLERISALGITHCAVTDINNTSAG
                     LELLQLAPKYGCKITIGVDFRNGAQQQYIALAQTTAGFAAINRHLSEHLHLGKPFESI
                     APELPEVIIIYPFDPLYHSAAALQRQAEADMQSQACTTDEQTSAYDHILSRPNSYIGV
                     RYRDLNKVYYRFGEAPPECFVALHTMTFRGSADFNTHRLLRAIDGNTLLSKLCKSEQG
                     HPEDLLLSPEQIQNHYAGMPVLLERTQKLLESCHIAMDLQNPKPSEE"
     gene            2852..>3451
                     /locus_tag="DHV98_05025"
     CDS             2852..>3451
                     /locus_tag="DHV98_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCK05719.1"
                     /translation="MNPIVLTIIAANVLMSFKGFNDRYFFERYKFQVGPINAGQRIRL
                     LSSAFLHVDISHLLFNMLTLYFFADVVLWGVGPLNFILIYAVSLFAGNWFSLKRHSSE
                     PHYSAVGASGAVMGILYAAIMLMPHMGLYLFFIPIPIPAWLFGILYLLYSIYGMKRQL
                     GSIGHDAHIGGAVGGYAIMLLLRPELLVTDLWLVLLMALP"
     assembly_gap    3452..3609
                     /estimated_length=158
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3666..4070)
                     /locus_tag="DHV98_05030"
     CDS             complement(3666..4070)
                     /locus_tag="DHV98_05030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05720.1"
                     /translation="MTQSFNWFRFKTLAFTLILGLLYGCPQERDPQDMALADLEYQWS
                     QILALAQSAPCDNPSQWSFTPYGSKACGGPQGYLAYPLSIDMDRFLNLVEQYRQAENQ
                     YNIDFNIVSTCDLPAEPTGVDCVDQLPVLLYD"
BASE COUNT          990 a          915 c          973 g         1098 t
ORIGIN      
        1 cgcgcgcccc gaacccgtcg cgctcttgtt ttttgagctt catgtgggcc tgccacagca
       61 gcgcccgctg ggcgactcca gtaaagcgaa aggcatcgat tttgatcagc agaatcaggg
      121 actctaaacc gatagggacc cgctccataa agtcgtccag atcggcaaag gccccgcctt
      181 gatcgcgctc gcgcagcaga tgacgaatca gattgtgctc taaagtgtag agtaacccca
      241 gtcctaaata gatgcggcgg cctttgacga tggtttcggc ccggcttgta ttgatacagg
      301 gagggcagat ttctgccccg tgcatgcggg cttcatgcag ataaaactct ggtcggtaaa
      361 aaccacctcc gttattgatg gtggccacca tgtattctat agggtagtag gctttgagaa
      421 aaagactttg gtagctctcc acggcataag aggccgaatg gcctttggca aaagcataac
      481 cggcaaaact ttcgatctga cgccagatgt cttgaaccnn nnnnnnnnnn nnnnnnnnna
      541 ttattaaaaa attgattttt gactttgaga aactcctctt tacttcggta tttacccgac
      601 atgccccgac gcagcatatc ggcctctcct aaattaagcc ccccaaaata gtgggcgact
      661 ttgatcacat cttcttgata aaccatgact ccgtaagtct cgggcatgat ctcttgcagt
      721 acgggatgag cttgggcacg gcgctcggga tagcgataac gcaagatgta ttcgcgcatc
      781 atccctgatt gagatacgcc cgggcgtatg atagaactcg ccgccaccag tcctaaataa
      841 tggtctactt gcagtttgcg cagcagcatc cgcatggctg gggattctac ataaaaacag
      901 cccatggccc gggcctcgcg cagcagcact ttgatcttag ggtcttgttt aaagcgcttt
      961 aggtcgtgta tatcgatagg tgggtggtct gggttgtttt cacgggcgat caaaacagcg
     1021 tctttgattt tgcccagtcc tctttggctg aggatatcaa acttatacaa cccaatgttt
     1081 tcggccacga ccatatcaaa atgagtgtnn gtatactgcg taatgggctg ctcagcaatc
     1141 aaaattcctc ccgcgtgaat ccctagataa ttaggcagac cgatcaggcg cttgctgtaa
     1201 cgcaccacgc attgggcccg atgatccagg tcttcatagc gatagcggcc tctagagagc
     1261 cgatcgattt ctgttttggg caggccaaag actttaccga gctcccgcac cgctgcgcgg
     1321 tgcttaaacg tattgtaaac cgcaatcagt gctgtgttct taaaacgctt gaaaataaaa
     1381 tcggtcacat cgtcgcggtc ggcccaagaa aaatccaaat caaaatctgg aggattggta
     1441 cggtacaggt tgataaagcg ctcaaaatac aaatccaaat cgatggggtc cacatcggta
     1501 atgcgcagca ggtaggcaat caggctattg gcaccactac cgcgccccac ataaaaataa
     1561 cctttgctgc gggcgtagcg caggattttc cagttgatca agaaataggc cacaaagcct
     1621 ttttgataga tgatttcgcg ctctttttta agacgatcga ggaccttttg ttggggttgc
     1681 tccccaaaac ggtagcgcag gccctttttg atcagtacat cgagcagttt taggtccaaa
     1741 gcgggattat tggtgtaagt ccttnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 gctcttccga aggcttggga ttctggaggt ccatagcgat atggcaggat tccaggagct
     1921 tttgggtgcg ctcgagcagt accggcatcc cagcgtagtg attttgtatt tgctcagggc
     1981 tgagcagtag gtcctctggg tggccttgct cgcttttgca gagtttgctc agcagggtgt
     2041 tgccgtctat agcccgcagg agtctgtggg tgttaaaatc ggctgatccg cggaaagtca
     2101 tggtatgtag ggcaacaaaa cactcgggag gcgcctcgcc aaatcggtaa tagactttgt
     2161 ttaaatcccg atagcgcacc ccgatgtagc tgtttggccg gctcagtatg tggtcgtacg
     2221 cgctagtctg ctcgtcagtc gtgcacgcct gtgattgcat gtcagcttca gcctgccgtt
     2281 gtagcgcagc agcactatgg tacagcgggt caaagggata aatgataatc acctcgggca
     2341 attccggggc tatggattca aaaggctttc ctaggtgcaa atgctcggat aaatgacgat
     2401 ttatcgcagc aaagcctgca gtggtttggg ccaaagcgat gtattgctgc tgagcaccgt
     2461 tgcgaaaatc taccccaata gtgattttac agccgtattt tggggccaat tgcaatagct
     2521 ccaaacccgc cgaagtatta ttgatgtcgg tcaccgcgca gtgggtaatg cctaaggccg
     2581 aaatcctctc gagcaggact ctgggcggca ttaatccgta gcgcaaacta aaggcggtat
     2641 gggtgtttaa atacataatt gggaattatt ccaaaattat ggaattattc caaatgtatt
     2701 gtagaacaaa aagtgatttt tattaacaat acaggtcaaa atcatttatt tttacgattg
     2761 tcgctgtcgt ttatcaaaag cgctgtcgta acagatcagc gcggtcgctt ataaaacagt
     2821 gccagagaaa aaacttaaca cccacattta aatgaacccc atagttctga ccatcattgc
     2881 cgcgaatgtt ttgatgtctt ttaaaggctt taacgaccgg tatttttttg agcgctacaa
     2941 gtttcaggtg gggcccatta atgctgggca gcgcatccgc ctattgagtt cggccttttt
     3001 gcatgtggac atcagtcatt tgctgtttaa tatgctcacg ctctactttt ttgccgacgt
     3061 ggtgctttgg ggggtagggc cgctcaattt tatcttgatc tacgcggtga gtttgtttgc
     3121 gggcaattgg ttttcattaa aaagacacag tagcgagccc cactacagtg ctgtaggtgc
     3181 cagtggggcg gtaatgggca ttttgtatgc cgcgatcatg ctcatgccac atatgggctt
     3241 gtatttattt tttattccca tcccgattcc ggcttggctt tttggaattc tctatctgct
     3301 ttattcgatt tacgggatga aacgtcagct gggctctatt ggtcacgacg cgcatatcgg
     3361 tggtgcagtc gggggttatg ccatcatgct cttgttgcgc ccagagctgc ttgttaccga
     3421 tttgtggctg gtgctgctca tggccctgcc cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnc cctgcccatc ggtttgcttt atttactcga gaaaaagggg tttatttaaa
     3661 caattctaat catacaacaa cacgggcaac tgatccacgc aatccacacc tgtgggttct
     3721 gcgggtaggt cacaggttga aacgatatta aaatcaatat tgtactgatt ttccgcttgg
     3781 cgatattgtt cgactagatt taaaaaacga tccatatcaa tactaagggg gtaagccaaa
     3841 tagccttgcg gaccgccaca agctttactg ccatagggcg taaatgacca ctgcgatggg
     3901 ttgtcacaag gcgcgctttg ggccaaagcc aagatttgac tccactgata ttctaaatca
     3961 gccaaggcca tgtcttgagg gtcccgctct tgagggcagc cgtagagcag accgaggata
     4021 agtgtaaaag ccagggtttt aaatcggaac caattaaacg attgagtcat atcgcagcta
     4081 aaattcgttt tttattttta ataagaaacg acccaaatat aacgtttaat cactgtttaa
     4141 attttgattc ccctcaaata ttttttggat tcccataact atttataatg ctatagtttt
     4201 ataattttta ttaatttgtt agtttatagt attatatttg taaataattt ata
//
LOCUS       DPUP01000142            5030 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16959,
            whole genome shotgun sequence.
ACCESSION   DPUP01000142 DPUP01000000
VERSION     DPUP01000142.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5030)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5030)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5030
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..936
                     /locus_tag="DHV98_05035"
     CDS             <1..936
                     /locus_tag="DHV98_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05721.1"
                     /translation="DDFVRDLLERAYIQPKGGGKDGEGSGMALTPKTEKLLREHALKQ
                     VFGKLKKAGSGDHKTKSTGQGNEATGEFKAYQFGDALEKISITESIKNAQIRNIGGDF
                     DLQQEDLVVEDSTYNTQMSTVLMIDISHSMILYGEDRITPAKKVAMALAEFITTRYPK
                     DTLDVLVFGNDAWPIAIKDIPYLEVGPYHTNTVAGLSLAMDLLRRRKNSNKQIFMITD
                     GKPSCLKEPGGTYYKNSVGLDDYIVDKCYNMARQALKLHIPITTFMIAQDPYLKRFVR
                     TFTEANKGKAFFTGLKGLGEMIFEDYQQNRKRRLG"
     gene            933..2390
                     /locus_tag="DHV98_05040"
     CDS             933..2390
                     /locus_tag="DHV98_05040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HCK05722.1"
                     /translation="MSKEIKTLGQLKASGYTPKNIQQELADNLRARIKSGEPTFEGLL
                     GYEHTVIPDVERALLSGHSINLLGLRGQAKTRLARKMTGLLDEWVPVVAGSEINDDPL
                     SPISYQAKALIAEHGDETPVTWLHRDDRFFEKLATPDVTVADLIGDVDPIKAANLKLS
                     YADERVIHFGMIPRAHRCIFVLNELPDLQARIQVALFGILQEKEIQIRGFKLRLPIEA
                     QFVFTANPEDYTNRGSIVTPLKDRIGSQILTHYPHSLTVAKAITRQEVKPREADQNMH
                     IPELARDLLEQIGFEARRSEYVDAKSGVSARMSITAFENLISTAERRMLINAQDKTTL
                     RMSDFLGIIAAINGKVELVYEGEQEGAEQISLHLINQAVKTLFPKYFPEIKKLQKQDQ
                     EGPYDSLLGWFYSDNDLFIEDGLPEDVYQDTLRSVPHLEDLVDEFQRDCASADKYFLM
                     EFLLWGLEAHKKLNKYRTLEGFQFKDGLGNLFAEL"
     gene            complement(2409..2828)
                     /locus_tag="DHV98_05045"
     CDS             complement(2409..2828)
                     /locus_tag="DHV98_05045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05723.1"
                     /translation="MTLAFSIRKNRHKKFQTLSFNGEKLWFGQKSVTLCVEHQKMMHF
                     MLHGKTLETGDIVDLFSGKDYSVSHMHKLKNDLIRDLRQVILNLTDRDDILIIEKSQE
                     DSRMSVYRLDLKQFDEGTLQAHGSQRRLNKDHQKEEE"
     gene            complement(2864..3823)
                     /locus_tag="DHV98_05050"
     CDS             complement(2864..3823)
                     /locus_tag="DHV98_05050"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05724.1"
                     /translation="MTVLLFKSFASVKSGMHTCSLVLLFFVSSLHGQIISDSLNTKVF
                     HNNRIYVFDSNHHFIASSVINFEDSNLSAADPNYEHFGIFHINDKTYFVSQKDLSVYQ
                     LRDSVPFALTTLDPKMMRTQDHELFLFDNKIHTFTHTALNNFHNSFFYYDEALNEWTS
                     PRHERSNADLFDLKDFQIVPQETRVYVFDGFKPAPDIPFKLNPNKQLFVYNFDTNKWS
                     NKPWHNLNSLGLLARYSSKCAVFIDKTIGNFSLVNFESNSIYSVPLNFVFGINTPDQF
                     SLNNKNELAVFIENPEPKLDYIDLAALFSDQKKNTQYTSMKLL"
     gene            complement(4067..4270)
                     /locus_tag="DHV98_05055"
     CDS             complement(4067..4270)
                     /locus_tag="DHV98_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HCK05725.1"
                     /translation="MKRNMGTADKTIRVLLALTFIYLYAYEYITGTLGLILMLVTLFF
                     NISCIVGHCPLYAALGINTNKKK"
     gene            4549..>5030
                     /locus_tag="DHV98_05060"
     CDS             4549..>5030
                     /locus_tag="DHV98_05060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05726.1"
                     /translation="MVLVSWFTAAQVTQPTIPVDGINYYMDTRAVFLNASTTGPWDFS
                     SINPDDSSEIAIQPIEDSPYAADYPNATHAYYEGGFAQFPGYTSTEYTYNGEQSFILS
                     SYPTPLVIFPYPFNVGDVHTDGIFNVPFEVPGGPPSLFRDHEVESEAMATGSITLPDG
                     T"
BASE COUNT         1532 a          973 c         1080 g         1445 t
ORIGIN      
        1 gacgattttg tacgcgatct acttgagcgc gcgtatattc agcccaaagg cggtggaaaa
       61 gacggggagg gctctggtat ggccttgact ccgaagaccg agaagctgct gcgggagcac
      121 gcgctcaaac aagtttttgg gaaattaaag aaagcggggt ccggggacca taaaaccaaa
      181 tcaacgggtc aaggcaatga ggccacagga gagtttaagg cgtatcaatt tggcgatgct
      241 ttagaaaaga tttcaattac cgagagcatt aaaaatgccc aaatccgtaa cattggaggg
      301 gattttgacc tgcaacaaga ggatttggtg gtcgaagaca gtacctataa tacccaaatg
      361 agcaccgtgc tgatgattga cattagtcac agcatgattc tttatgggga agaccgaata
      421 acccccgcta agaaggtcgc tatggctttg gcagaattta ttaccacgcg ttacccaaaa
      481 gacactttgg atgtattggt ttttggcaat gatgcttggc ccatcgccat taaagacatt
      541 ccttatttag aagtaggccc ttatcacacc aatacggtgg ccgggctttc tttagccatg
      601 gatttgctgc gccgccgtaa aaacagcaac aaacagattt ttatgatcac cgatggcaag
      661 cccagctgtc tcaaggaacc gggagggacc tattacaaaa acagtgtggg tctagatgat
      721 tatatcgtcg ataagtgtta taacatggcc cggcaggcct taaaactgca catacccatt
      781 actaccttta tgattgctca ggatccgtat ttgaagcgtt ttgtgcgcac gtttacagag
      841 gccaacaagg gcaaagcctt ttttacgggc ttaaaaggtc ttggagaaat gatatttgaa
      901 gattatcagc aaaacagaaa aagaagatta ggatgagcaa agaaattaag accctcgggc
      961 agttaaaagc ctcaggatat accccaaaaa acatacagca agaactcgct gataatttgc
     1021 gtgcgcgcat caagtctggt gaaccgacct ttgaaggatt gttgggatat gagcacacgg
     1081 tgatccctga tgtggagcgc gccttgcttt cagggcacag catcaaccta ttagggctac
     1141 gcggccaggc caaaacgcgt ttggcacgca aaatgaccgg gcttcttgat gagtgggtcc
     1201 ccgtggtggc tggatctgag atcaatgatg atccgctgag tccgatcagt tatcaggcta
     1261 aagcactcat agcggagcac ggagatgaaa ctcctgtaac gtggttgcat cgtgatgatc
     1321 gtttttttga aaaactagcc accccagatg taaccgtagc cgatttgatc ggcgatgtag
     1381 atccgatcaa ggcagcgaat ctcaagctct cttatgcgga tgagcgggtt attcactttg
     1441 ggatgattcc gcgggcgcac cgctgtattt ttgtgcttaa tgagcttcct gatcttcaag
     1501 cgcgtattca ggtggcgctt tttggtattc ttcaagagaa agaaatccag attcgtgggt
     1561 ttaaactacg cctgcctatt gaggctcagt ttgtctttac cgcgaatccc gaggattaca
     1621 cgaaccgtgg gagtatcgta accccgctca aggaccgaat cgggtctcaa atcttaacac
     1681 attatccgca ttcattaacg gtggccaagg ccattacgcg gcaggaggta aaacctcgcg
     1741 aggcggatca aaacatgcat atccctgaac tcgcccgcga cctcttagag caaattggct
     1801 ttgaagcacg gcgcagtgag tatgttgatg ccaaaagtgg ggttagtgcc cgtatgagta
     1861 tcacggcttt tgaaaatcta atcagtactg cagagcgccg gatgctgatt aatgctcagg
     1921 acaaaacgac cctacgcatg tctgatttct tggggattat cgccgccatt aacggtaaag
     1981 tagagttggt ctacgaagga gagcaggagg gggctgagca gatttcattg cacttgatca
     2041 atcaggccgt aaaaacctta tttccaaagt atttcccgga gattaaaaaa ctccaaaaac
     2101 aagaccaaga gggcccgtac gacagtttat tgggctggtt ttacagtgat aacgatttat
     2161 ttatcgaaga tggtctaccc gaagacgtct atcaagatac cttgcgctct gtaccccatc
     2221 tagaagatct agtggatgaa tttcaaaggg attgtgcatc cgcagataaa tactttttaa
     2281 tggaattttt actctgggga ctcgaggccc acaaaaaatt aaacaagtac agaaccctgg
     2341 aaggatttca gtttaaagac gggctaggca atctgtttgc cgagttgtag ttgtatcaca
     2401 cactgaagtt attcttcctc tttttggtga tccttgttta gcctgcgttg agatccatgg
     2461 gcttgtaatg tcccttcatc aaattgtttt aagtccaggc gatagacact catgcgcgaa
     2521 tcttcttggg atttttcaat gatcaagatg tcatcgcgat cagttagatt taagataact
     2581 tgcctcaaat ctcttataag atcatttttt aacttgtgca tatgcgaaac actgtagtct
     2641 ttacctgaaa aaaggtcaac aatatctcca gtttctaaag tttttccgtg cagcataaag
     2701 tgcatcattt tttgatgctc cacacaaagg gtaacggact tttgtccaaa ccacaatttt
     2761 tcgccgttaa aagagagtgt ttgaaatttt ttatgtcgat tttttcgtat tgaaaatgcc
     2821 aatgtcatca aaacaagaat gactaaaatg agtatccctg gaattaaagt agtttcatcg
     2881 atgtatattg agtgtttttt ttctgatcag aaaacaacgc cgctaaatca atgtaatcca
     2941 gctttggctc agggttttca atgaaaaccg caagctcgtt tttattattt agagagaact
     3001 ggtccggggt atttatgcca aaaacaaaat ttagtgggac actgtaaata ctgttcgatt
     3061 caaaatttac taatgagaaa ttgccgatag ttttatcgat aaatacagca cattttgatg
     3121 agtatcttgc caataggccc aatgagttta agttatgcca tggcttgtta ctccatttat
     3181 ttgtgtcaaa attatagaca aacaattgct tgttgggatt taatttaaac ggaatatctg
     3241 gtgcaggctt aaaaccatca aacacataaa cacgtgtttc ttgaggcaca atttgaaaat
     3301 ctttgagatc aaataaatct gcgttggaac gctcgtgccg ggggctcgtc cactcattta
     3361 acgcttcatc gtaatagaaa aaactattat gaaagttatt taatgcagta tgtgtgaacg
     3421 tatgtatctt attgtcaaat agaaataatt catgatcctg ggttcgcatc atttttgggt
     3481 ctaaagtggt taatgcgaac ggaaccgaat ctcttaattg gtagacactt aggtcttttt
     3541 gactgacaaa ataggtctta tcgtttatgt gaaaaattcc gaaatgctca tagttggggt
     3601 ccgcagcgct caaatttgaa tcctcaaagt taattacaga ggaggctata aaatgatgat
     3661 ttgaatcaaa cacatagatc cgattattat ggaacacctt ggtattgagc gagtcgctta
     3721 taatttgacc gtgaaggctg ctgacaaaaa ataataatac taaggaacaa gtatgcattc
     3781 ctgatttaac gctcgcaaat gatttaaaca ataatactgt cataacactt aatttgcgat
     3841 agtacaagaa aagaaaaaag aaacaagtaa tgctaaactt gaataatcat tattattatt
     3901 attaaattct catcaaatat attgaataga tgaataattg ataaattttt gaactaaaaa
     3961 aatcatttta tcaattattt cgtaaaatat aaaatattat tattttggaa taaataacaa
     4021 agcgacccca taatcatggg gtataaacgc aaattgaggg aaaagtttac tttttcttat
     4081 tggtattgat acccaaagcg gcgtataatg gacaatggcc cacaatacag ctgatattga
     4141 aaaatagtgt aacgagcatc agtattaggc ccaaggtgcc tgtaatatat tcgtaagcat
     4201 ataggtagat aaaagtaagc gctaacagca cacggattgt cttgtccgct gtacccatgt
     4261 ttctcttcat cgtgctggat tgttaggctt agcgacatat aagtaccata ttttcgaaat
     4321 tagcaataca ccatcagaca tattacaaga atatgcgata aacggtattg tgcctttttt
     4381 tgaaatcctt tttttttgaa atgagttaac aggcatcaag accaagcagt agtaatctta
     4441 agtctaagta agtgaaaatt gaaaatggat ttcatttttg aagattaatt tctatattgc
     4501 aataaacaat ttaaaattat ttcgaagaaa acaaaattat tttcagccgt ggtattggtt
     4561 agttggttca ccgcggcaca agttactcaa ccaacaattc ctgtcgacgg aatcaattat
     4621 tacatggata ccagggcagt ctttttaaat gcctcgacta caggtccatg ggatttttcc
     4681 tcaattaatc ctgatgactc aagtgaaatt gccattcagc cgattgaaga ttctccttac
     4741 gccgctgatt atccaaatgc aacacatgcc tattatgaag gtggatttgc gcaatttcct
     4801 ggttatacga gtactgaata cacgtacaat ggagaacaaa gcttcatact ttctagctat
     4861 cctacaccat tagtgatttt tccttatcct tttaatgtgg gtgatgtaca taccgacgga
     4921 atttttaatg tgccattcga ggtgccaggc ggcccaccat ctttatttcg tgatcacgaa
     4981 gttgagtcag aggctatggc aactggaagc ataactcttc ctgatggcac
//
LOCUS       DPUP01000143           10353 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8478,
            whole genome shotgun sequence.
ACCESSION   DPUP01000143 DPUP01000000
VERSION     DPUP01000143.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10353)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10353)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10353
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..610
                     /locus_tag="DHV98_05065"
     CDS             <1..610
                     /locus_tag="DHV98_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HCK05727.1"
                     /translation="IDESATIKRALSPYGNTKQIAEEILHDLCKVSPMRTILLRYFNP
                     IGAHDSALVGELPKGVPQNLVPFITQTAAGLRERLSVFGDDYPTADGSCIRDYIHVMD
                     LAEAHVVALNRLVQKAQLEPVEVFNLGTGQGNSVLEVIQTFEQATSVKLPYQIVGRRE
                     GDVIAVYADTNKATQVLGWSTKRDLATSLSSAWAWEKRIRGL"
     gene            complement(605..1486)
                     /gene="fabD"
                     /locus_tag="DHV98_05070"
     CDS             complement(605..1486)
                     /gene="fabD"
                     /locus_tag="DHV98_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[acyl-carrier-protein] S-malonyltransferase"
                     /protein_id="HCK05728.1"
                     /translation="MKAYVFPGQGAQFTGMGKELYEQSPLAKSLFEQANDILDFDITK
                     IMFEGSAEDLKQTEVTQPAVFLHATILAQVLGDTFQPDMVAGHSLGEFSALVANKTLS
                     FEDGLKLVFQRAQAMQKACAIEPSTMAAVLGLEDSVVEQICQETPGTVVAANYNCPGQ
                     LVISGSINAVEAACAKLTEAGARRALILPVGGAFHSPLMAPAQEELGRAIEATNFAQP
                     ICPVYQNVTAAAVEDPAAIKSNLLAQLTAPVRWTQSVQQMIQDGATHFVEVGPGNVLQ
                     GLVKKINRDAQTEKAEL"
     gene            complement(1526..2032)
                     /locus_tag="DHV98_05075"
     CDS             complement(1526..2032)
                     /locus_tag="DHV98_05075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HCK05729.1"
                     /translation="MVTMIAAIGANYELGKDNDLVWHLPDDFKRFKALTTGHCIIMGR
                     KTFESFPRLLPNRKHIVITRNSDYAVPQGVVVVQNMAEALAHTKDDPQPFIIGGGEIY
                     RLGMQWADCLEITHIDGHFDCDTFFPEFDHELWDCISSVSHGKDQNHDYAFTYKTYHR
                     KETKNKIE"
     gene            complement(2075..2509)
                     /locus_tag="DHV98_05080"
     CDS             complement(2075..2509)
                     /locus_tag="DHV98_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCK05730.1"
                     /translation="MRKYIIASLLILVSNVVLAQEWGTVDKNKVTLKEIAPVWAGCED
                     QSGAGLQKCFTQKLTQHVVKNFKYPADAYKSNTQGRVTVEFIINTEGMVEIKNVSGGA
                     PSLQAEARRNISLIPKMVRPGMYAGKPKAIQYTVPFDFKTGK"
     gene            complement(2544..>3290)
                     /locus_tag="DHV98_05085"
     CDS             complement(2544..>3290)
                     /locus_tag="DHV98_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCK05731.1"
                     /translation="KSVFGYQMRFDLSEGFPMVTTKKLHLKSIIYELLWFLKGDTNIA
                     YLQENGVRIWNEWADPQGNLGPVYGHQWRNWNSEEIDQIKEVIDTLKNNPDSRRMLVS
                     AWNPSVLPDTKQSFAENVAQGKAALPPCHAFFQFYVADGKLSCQLYQRSADIFLGVPF
                     NIASYALLTMMMAQVCGYAPGDFVHTFGDAHIYSNHLEQLELQLSREPRRLPKMILNP
                     EIRDIFDFTFEDFTLTDYDPHPHIKGAVAV"
     assembly_gap    3291..3520
                     /estimated_length=230
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3521..3621)
                     /locus_tag="DHV98_05090"
     CDS             complement(<3521..3621)
                     /locus_tag="DHV98_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HCK05732.1"
                     /translation="MKQYHDLVRHVLEHGAVKEDRTGTGTKSVFGYQ"
     gene            complement(3771..5504)
                     /locus_tag="DHV98_05095"
     CDS             complement(3771..5504)
                     /locus_tag="DHV98_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013188398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+ dependent nucleoside transporter"
                     /protein_id="HCK05733.1"
                     /translation="MLKNFLLMSAMLFSTLVCCQSIDGTWQFESITKEGQSLFDINTE
                     ADYLTLESGAFNYTLEAKNNLEASGTYQLNDHLLTLNYRRPKDTIRSYELRINQDTLV
                     LKESGVIYQFIAKSIPSQIIPIEESNTQLRTSTPPAAVSEGLSVSLESLGRGLLGLTF
                     LVLIGFLLSSNRRRIDWRLVGTGLLLQVIFAVLVLKVDRVALSFDWLSQQVVTFLNFS
                     EKGAEFLFGGLVNNQDTFGYIFAFKVLPTVVFFSAFTSVLYYFGIIQRVIKVFAWVMS
                     RTMRLSGAESLAAAANIFIGQTEAPLVVKPYLDKMTKSELMCLMVGGMATIAGGVLAA
                     YIAFLGGSSEAEKIYFAKHLLTASIMSAPAAIVIAKMLYPETETVDRKLDVSREKIGT
                     NVLDAIARGTTDGLKLAINVGAMLLVFTALIAVFNWITVDWIGGPTGLNDQINQQTAG
                     RYTGLSLQYILGNLFAPVAWIIGVPSADIISVGQLLGEKTILNEFFAYASLSDLKNSG
                     LLTSNRSIVIATYSLCGFANFASIGIQIGGIGGLAPSQQSNLAKFGIKALIGGTIAAL
                     MTATIAGMLIG"
     gene            complement(5507..6127)
                     /locus_tag="DHV98_05100"
     CDS             complement(5507..6127)
                     /locus_tag="DHV98_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05734.1"
                     /translation="MSLVRLNIKGISYSQTQNGAYALILSEEDGERKLPIVIGAFEAQ
                     SIAIALENEIRPPRPLTHDLFKTFADRFGIVVKQVIIHKLVDGVFYSSIIAERGADEE
                     ILDARTSDAIALALRFNAPIFTYKDILNQAGIHLQTTPVNQDETEQQDGAIAKLLGQD
                     TEQEPKRPNYAKHTVKELKELLSQAITQEDYETAARLRDELSKRNK"
     gene            complement(6202..7164)
                     /locus_tag="DHV98_05105"
     CDS             complement(6202..7164)
                     /locus_tag="DHV98_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCK05735.1"
                     /translation="MPILVYAESDQGIFKKSTQELISFARAIADQMNTEVIAAVTQDP
                     SNANLGQYGAHKVLNLEQPSLGEFNAELVADALTQAARATGSSTVIVSSSANSRYMAP
                     LLAVSLEAGYVPNVVALPQSYTPLTVAHNVFTNKATAFTSLQSSISILGLSKNAYGVH
                     QYDTNAAITKQEVTLTSSSVEVTSLDKASNKVMIADAEVVVSAGRGLKGPENWGMIEE
                     LAEVMGAATACSKPVSDLGWRPHSEHVGQTGKPVASNLYIAIGISGAIQHLAGINSSK
                     VKVVINTDPEAPFFKAADYGIVGDAFEVVPDLIQKLREFKAQNA"
     gene            complement(7215..7955)
                     /locus_tag="DHV98_05110"
     CDS             complement(7215..7955)
                     /locus_tag="DHV98_05110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HCK05736.1"
                     /translation="MKILVCISHVPDTTSKINFNADQTAFDTAGVQYVINPNDEFGLT
                     RALWFKEKQGATIHVVNVGGPETEPTLRKALAIGADEAIRINQPATDGYSVAQALAIV
                     VQEGQYDLVIAGRESIDYNGGMVPGMVAKICGYAFVNTCIGLDIDGASVTAVREIDGG
                     KENLKTTLPLVIGGQKGLVEESDLRIPNMRGIMQARTKPLHVKQTEHPKAMSQTLRYE
                     KPAPKQAVTLVENAEQLINLLHHEAKVI"
     assembly_gap    8041..8160
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            8279..9262
                     /locus_tag="DHV98_05115"
     CDS             8279..9262
                     /locus_tag="DHV98_05115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HCK05737.1"
                     /translation="MKTIQFREAICEAMSEEMRRDERIYLMGEEVAEYNGAYKASKGM
                     LDEFGPERVIDTPISELGFAGIATGSAMNGNRPIVEFMTFNFSLVGIDQIINNAAKIR
                     QMSGGQFNCPIVFRGPTGSAGQLGATHSQAFESWFANTPGLKVVVPSNPADAKGLLKS
                     AIRDDDPVIFMESEQMYGDKGEVPEGEYLIPLGVADIKRKGSDVTIVSFGKIIKEAYT
                     AADELAKEGIECEIIDLRTVRPMDHKTILDSVKKTNRLVILEEAWPFGNVATEITYQV
                     QSQAFDYLDAPIVKINTADTPAPYSPVLLAEWLPNKEDVIAAVKKVMYRKS"
     gene            9412..>10353
                     /locus_tag="DHV98_05120"
     CDS             9412..>10353
                     /locus_tag="DHV98_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009422089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HCK05738.1"
                     /translation="MLEQNIIYIPVALSVLGLLFMLVKMSWVKKQAAGSERMQSISKS
                     IKEGALAFLNAEYRLLVIFAVVAAALLFLISTMVETTSWMIVPAFLFGAIFSALAGNI
                     GMRVATEANARTAEAAKTSLPQALKVSFGGGTVMGLGVAGLAVLGLSLFFMFFLGQFI
                     TDGGNFYNEMTIVLEALAGFSLGAESIALFARVGGGIYTKAADVGADLVGKVEAGIPE
                     DDPRNPATIADNVGDNVGDVAGMGADLFGSYVATVLASMVLGNYVIRDMSVSAPFSDA
                     FNNMGPILLPLVIAGVGILASIIGTFLVSIKDNSAKEA"
BASE COUNT         2614 a         2170 c         2383 g         2836 t
ORIGIN      
        1 tatcgatgag tctgctacga ttaaacgggc attatcccct tacggaaaca cgaagcaaat
       61 tgccgaagaa attcttcacg acttgtgcaa agtgagtcca atgcggacta ttttgttgcg
      121 ctatttcaat cctattggag ctcatgattc cgctttagta ggcgagctcc ctaaaggagt
      181 tcctcagaat ctcgtgccat tcattaccca gactgcggcc ggtttgcgcg agcgactttc
      241 cgtttttggc gatgattatc ctacggcaga tggaagctgt attcgcgatt acattcacgt
      301 aatggatttg gctgaggccc atgttgtggc cttaaatcgt ttggttcaaa aggcacagct
      361 agagcctgtt gaggttttta acctgggtac aggacaaggg aactcagtgc ttgaagttat
      421 tcaaaccttt gagcaagcga ccagcgtaaa attgccctac caaatcgtag gcaggcgcga
      481 aggagacgtt atcgcggttt atgcagacac caacaaggcg acacaggttt tgggctggag
      541 caccaaacgc gatttagcga cctccctgtc ctcggcatgg gcctgggaaa agcggattcg
      601 cggactataa ttcggccttt tctgtttgag cgtctcgatt gattttcttg actaatccct
      661 gaagtacatt tccaggacct acttcaacaa aatgagtggc tccgtcttgg atcatttgtt
      721 gtacactttg tgtccaacgc acgggagcgg taagctgagc caataaatta cttttgatgg
      781 ctgccggatc ttctacggcc gcggcggtca cgttttggta gacgggacaa atcggttggg
      841 caaaatttgt ggcctcaatg gcgcgcccga gttcttcttg ggctggggcc attagtgggc
      901 tgtgaaaagc cccccctaca ggcaagatca gtgctcggcg agcgcccgcc tccgtgagtt
      961 tagcacacgc ggcctcaacg gcgttgatac ttccagaaat aacgagttga cccgggcaat
     1021 tgtaatttgc cgccacaaca gttcctgggg tttcttgaca aatttgttct accacggaat
     1081 cttctaatcc gagtacggca gccatggttg agggttctat ggcacaggct ttttgcatgg
     1141 cttgggccct ttggaagacc agtttgagcc cgtcttcaaa gcttagcgtt ttattggcca
     1201 caagagcgga aaattctcct aatgagtgtc ctgcgaccat gtccggttga aaggtatcgc
     1261 ccaagacctg ggctaaaatg gtggcgtgta aaaagacagc aggttgggta acctcagttt
     1321 gttttaaatc ctctgcagag ccttcaaaca taatcttagt aatgtcaaag tccaagatgt
     1381 cgttggcttg ttcaaaaaga gatttagcca aaggggattg ctcgtaaagt tctttgccca
     1441 ttccagtaaa ttgggcccct tgtccaggaa atacgtatgc cttcatagat gtaattttta
     1501 tatgctgttt tgggcaataa tgagtttatt caatcttatt tttggtttct tttcggtggt
     1561 aggtcttata tgtaaaggcg taatcatgat tttgatcctt tccatggctt acgctagaga
     1621 tacagtccca aagttcatgg tcgaactcgg gaaaaaaagt gtcgcagtca aagtggccat
     1681 cgatatgcgt gatttcaagg caatcggccc actgcattcc caaacgataa atttcgcctc
     1741 caccaatgat aaagggttgc gggtcgtctt tggtgtgcgc taatgcttcg gccatatttt
     1801 gaaccaccac aacgccttgg ggaactgcat aatcagagtt tctcgtaatg acgatgtgtt
     1861 tgcgattcgg cagaagccga ggaaaggact caaaggtttt acgtcccata atgatgcaat
     1921 ggccggtggt gagcgcttta aatcgtttaa aatcgtctgg taaatgccaa accagatcgt
     1981 tgtctttgcc tagttcgtag tttgcgccaa tggcggcaat cattgtaacc ataacccttt
     2041 ttcgtgtccg ttatatttac ttatatccaa aggcttactt cccagtttta aaatcaaaag
     2101 gaacggtata ttgaatcgct tttggtttgc cggcgtacat tccggggcgc accattttgg
     2161 gaattaagct gatgttgcgg cgcgcctctg cttgcaaaga aggggctcct ccgctcacat
     2221 tttttatttc taccatacct tcggtattga tgataaactc tacggttaca cgcccttgag
     2281 tattgctttt atacgcatcg gcaggatatt tgaaattttt aaccacatgt tgggttagtt
     2341 tttgggtaaa gcacttttga agcccggccc cagattggtc ttcacagccc gcccaaacag
     2401 gagcgatttc ttttagggtg accttatttt tatctactgt tccccattct tgggcgagta
     2461 caacatttga aacaaggata agaaggctcg cgataatgta ttttctcata atgatgtgtt
     2521 ttataaaatt ctttaagaca ggtctatacg gccacagcgc ctttaatgtg cggatgcggg
     2581 tcgtaatctg taagggtgaa atcttcaaaa gtgaagtcaa aaatatctct tatttctggg
     2641 ttcaatatca tttttggtaa gcgacgaggc tcacgagaca attgaagttc gagttgctcc
     2701 aaatgattgc tgtaaatatg cgcatcgcca aaagtatgga caaagtctcc aggagcataa
     2761 ccgcaaactt gggccatcat catggtcaaa agagcataag aagcaatatt aaagggaacg
     2821 cctagaaaga tatcggcact gcgctgatag agctggcagg agagtttccc gtccgcaacg
     2881 taaaattgaa aaaaagcatg acagggcggc agggcagctt taccttgagc tacgttttcg
     2941 gcaaaagact gtttagtgtc cgggagcacc gaaggattcc aagcgctgac cagcatgcgt
     3001 cggctgtccg gattgttttt taaggtgtcg atgacttctt tgatttgatc gatctcctcg
     3061 ctgttccaat tgcgccactg gtggccataa acagggccaa gattgccttg aggatctgcc
     3121 cattcattcc atatacgcac gccgttctcc tgcagataag cgatattggt gtcgcctttt
     3181 aaaaaccata aaagctcata aattatggat ttcagatgga gttttttggt cgtgaccatc
     3241 gggaagccct cacttaggtc aaaacgcatt tgataaccaa aaacactttt nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn atttgataac caaaaacact
     3541 tttggttccg gtccctgtgc ggtcttcttt caccgcaccg tgttccaaga catggcgcac
     3601 taagtcgtgg tattgtttca tttatctaac agcttcagat tatggtaaaa ataaaaaaca
     3661 taacttctcg tggattcaga gaaagcccac ttttatcaat agttattaac ggaaaaggtc
     3721 acttttagct tcgtgtatcc ccgtcaatga tcaagccttt atttgaataa ttatccgatg
     3781 agcattccgg caatagttgc ggtcatcaag gccgctatgg ttcccccgat tagggctttg
     3841 atcccaaact tagccaaatt agattgttgg cttggggcga gtccgccaat accgccgatt
     3901 tgaatgccga tcgaggcgaa attcgcgaaa ccacagagtg aataagtcgc gatgacaata
     3961 gatcgatttg aggttaacag tccgctgttt ttaagatcag acagcgaggc ataggcgaaa
     4021 aactcattga gtattgtttt ctcccctaac aattgtccga cactgataat atctgccgaa
     4081 gggaccccga tgatccaggc cactggggcg aataaattac ccagaatata ctgtagggaa
     4141 agccccgtat agcgtcctgc tgtttgttgg ttgatttgat cattaaggcc ggttggtccc
     4201 ccaatccagt ctacggtaat ccagttaaac accgcgatca atgcggtaaa taccagcagc
     4261 attgccccga cattgatggc caatttcagg ccgtctgtcg ttcctcgtgc aatggcatct
     4321 aggacattgg tcccgatttt ttctctggag acatcgagtt ttcgatccac cgtctcggtt
     4381 tcgggataaa gcattttggc aataacgatg gccgcagggg cagacataat tgaggccgtg
     4441 agcaaatgct ttgcgaaata aattttttca gcctcactcg agccccctaa aaaagcgata
     4501 taagcagcca aaaccccgcc ggcaatagtg gccattcccc cgaccataag acacatgagc
     4561 tcgcttttgg tcattttgtc cagatacggc ttcaccacaa gtggcgcttc ggtttgaccg
     4621 ataaaaatgt tggctgccgc cgcgagactc tcggctccag ataggcgcat ggttcggctc
     4681 atgacccaag caaaaacctt gatgaccctt tgaattattc caaaataata gagtaccgag
     4741 gtgaaggcag aaaagaaaac gaccgtaggc aacactttaa aagcgaaaat ataaccaaag
     4801 gtatcttgat tgttgaccag cccaccaaag agaaattcag cacctttttc actgaaattt
     4861 aaaaaggtca ccacttgttg ggacagccag tcaaaactca gcgcgacgcg atctactttt
     4921 aaaaccagca ccgcaaaaat aacttgaagg agcaatcctg ttcctaccaa acgccaatcg
     4981 atgcgtctgc gattactgct cagtaaaaat ccgataagca ccaaaaaggt gagcccgagg
     5041 aggccgcgtc ctaagctctc aaggctaaca ctcaggccct cgcttaccgc agcgggcggt
     5101 gtacttgtcc ttaattgcgt attggattct tctatgggta tgatttgaga agggatgctt
     5161 ttggcgataa actgataaat gaccccagac tcctttagaa caagggtatc ttgattgatc
     5221 cgcagctcat aagagcgaat cgtgtctttt ggacgacgat aattcagtgt caagagatgg
     5281 tcattaagct gataggttcc tgaagcctca agattatttt tggcctcaag cgtataatta
     5341 aatgcccctg attctaaggt taaatagtcg gcctccgtgt tgatgtcaaa taaggattga
     5401 ccttccttgg tgatggattc aaattgccag gtcccatcaa tcgattggca gcagaccagt
     5461 gtgctgaaga gcattgcgct catgagcaag aaatttttca gcatacttat ttgtttcttt
     5521 tggataattc gtcgcgcagt cttgccgcag tttcataatc ctcttgtgta atggcctgac
     5581 tcaaaagttc tttgagttct tttacggtgt gttttgcgta attaggacgc tttggttcct
     5641 gttcagtatc ttgacccaat agcttggcaa tggccccgtc ctgttgttct gtctcatctt
     5701 gattgacagg agtggtttgc aggtgaatac cggcttggtt aaggatgtct ttataagtaa
     5761 aaatgggggc attaaatcta agggccaaag caatcgcatc actggtgcgc gcatctaaaa
     5821 tttcttcatc ggcgccccgc tcggcaataa tactggaata gaaaacacca tcaacaagtt
     5881 tgtgaataat cacttgcttg acgacgatac caaagcgatc tgcgaaggtt ttgaataaat
     5941 catgagtcaa tggccttggt gggcggattt cgttttctaa agcaatcgct attgattgtg
     6001 cctcaaacgc cccaataact atggggagct tgcgctcacc gtcttcttca cttaaaataa
     6061 gagcataagc cccattttgc gtttggctgt aggagattcc tttaatgttg aggcgcacaa
     6121 ggctcatgtt ggtgggtgtt attcatggcc gagaccaaag cgcaaacaat taatttgctt
     6181 gcctgcacca aaataagaaa attatgcgtt ttgcgcttta aactccctta atttttggat
     6241 taagtcaggg acaacctcaa aagcatcgcc aacgataccg taatctgcgg ctttgaagaa
     6301 cggtgcctca gggtctgtat tgatcacgac ctttacttta gaggaattga ttcctgccaa
     6361 atgttgtatg gcgccactaa tgccaatagc gatataaagg ttagaggcga caggttttcc
     6421 ggtttgtccc acgtgttcgc tatggggtcg ccagcctaaa tcactcacag gtttagagca
     6481 cgcagtggcg gcgcccatga cttcggcgag ttcttcgatc atcccccagt tctctggacc
     6541 tttgagccca cgccctgcag aaacaacgac ttcggcatcg gcaatcataa ccttgtttga
     6601 tgctttgtct aaactggtaa cttctaccga ggaagaggtc agtgttacct cctgtttggt
     6661 gattgctgca tttgtgtcgt actgatgaac gccgtaggca tttttggaca agcccaaaat
     6721 gcttatgctg ctttgtaagc tggtaaaggc cgttgccttg tttgtgaaaa cattgtgcgc
     6781 cacggttaat ggcgtgtaag attggggcag tgcaaccaca ttgggaacgt atccggcctc
     6841 gagggatacg gccaataagg gcgccatata acggctattg gcactagagg atacgatgac
     6901 cgtgctcgat ccagtagcgc gagcggcctg agttaaggca tccgcaacaa gttctgcatt
     6961 gaactcgccc aatgacggct gttccagatt taacaccttg tgcgcgccgt attggccgag
     7021 gttggcgttt gaggggtctt gcgtcaccgc agcaataacc tcagtattca tttggtcggc
     7081 tattgctcgg gcaaatgaaa tgagctcttg agtacttttc ttaaaaattc cttgatcaga
     7141 ttctgcgtag actagaatgg gcataaggct gaggattgtt aaaatgttag cgttattaaa
     7201 aggctttaag gtctttaaat gactttagcc tcgtggtgca ataagttaat cagttgttcg
     7261 gcattttcga ccaaagtcac ggcctgcttt ggggctggtt tttcgtagcg cagcgtttga
     7321 gacatggcct tgggatgttc ggtctgtttt acgtgtaacg gtttggtgcg ggcctgcatg
     7381 atcccgcgca tgttgggaat acgcaaatca ctttcctcga ccaatccttt ttgcccacca
     7441 atgaccaaag gcaaggtcgt ttttaaattt tctttccctc catcgatctc tctgaccgcc
     7501 gttacagagg ctccgtcaat gtcaagaccg atgcacgtat tgacaaaagc ataaccacaa
     7561 atctttgcca ccatgccggg gaccatcccg ccattgtaat caatagactc tcggccggca
     7621 ataaccagat catattgtcc ttcctggacc acgatcgcta atgcttgcgc cacactataa
     7681 ccatctgtcg cgggctgatt gatgcgaata gcttcatcag caccaatggc caaggcctta
     7741 cgcagagtgg gttccgtttc gggaccaccg acattcacga catggattgt agccccttgt
     7801 ttttccttaa accaaagggc acgagtgagc ccgaattcgt cgtttgggtt aatgacatat
     7861 tgaacgcccg cggtgtcaaa agcggtttgg tcggcgttaa agttaatttt tgaagtcgtg
     7921 tcaggaacat gactaataca cacgagtatt ttcatgggta gtggacagtt ttttgagtcg
     7981 ttattttgtt gttacgaaga tacgataatc ccttcaattt tactatgcat gcatagtaaa
     8041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8161 tttactatgc atgcatagta aaaatacata attatgacaa aaaatcgagc aaacttttca
     8221 aatagtatta tttttgcttc gcctgaaaaa attcagggtc aaatagacag taaatatcat
     8281 gaaaacgatt cagtttagag aagcgatttg cgaggcgatg agtgaagaaa tgcgccgaga
     8341 tgagcgcatt tatttgatgg gtgaggaagt tgccgaatac aatggggctt ataaggcgag
     8401 taaaggcatg cttgacgagt ttgggccaga gcgtgttatt gataccccaa tttcagaatt
     8461 gggtttcgcg ggaatcgcca cgggttctgc catgaatgga aaccgtccta tcgttgaatt
     8521 tatgaccttt aacttctcat tagtgggtat tgatcaaatc atcaacaatg cggcgaaaat
     8581 tcgtcaaatg agtggcggtc aatttaattg tcctattgtt tttcgcggcc cgaccgggtc
     8641 tgcagggcag ttaggggcta cacactccca agcttttgaa agttggttcg ccaacacccc
     8701 aggtctaaaa gtagtggtcc ccagtaatcc ggcggatgct aagggattat taaagagtgc
     8761 tattcgtgat gatgacccag taatctttat ggaaagtgag cagatgtatg gagataaggg
     8821 tgaagtgcct gaaggggaat accttattcc gctcggtgtt gccgatatca aacgtaaagg
     8881 ctcagacgtt acaattgttt ctttcggaaa aatcatcaaa gaagcctata cggccgctga
     8941 tgagctcgcc aaggaaggaa ttgaatgtga aatcattgac ctgcgtacgg tgcgtcctat
     9001 ggaccataaa acaattttgg atagcgttaa aaaaacgaat agattggtca ttttggaaga
     9061 ggcgtggcct tttggtaatg tggccactga aataacttat caagttcagt ctcaagcctt
     9121 tgattatctt gacgcgccga ttgtaaaaat caatactgcc gatactccgg caccttactc
     9181 accagtacta cttgcagagt ggcttcccaa taaagaagat gtcattgccg cggtcaaaaa
     9241 agtgatgtat cgtaaatctt aagtttaaac caggacttta attagaaata cgcgtgttaa
     9301 ccacaagttg tctttgggtc attaatccat aagaatcagt tggataaccg atctatttta
     9361 ctacttttgc caccgcaaaa aattgtaata aaacctacta aataatcaat tatgttagaa
     9421 caaaacatta tttacatccc tgtagcactg tctgtattag gactgttgtt tatgttggtc
     9481 aaaatgagtt gggtcaaaaa acaggcggca ggaagtgaac gcatgcaaag catttcaaag
     9541 agcatcaaag aaggtgcttt agcctttctt aatgcggaat atcgattgtt ggtaattttt
     9601 gcagtagtcg ctgcagccct tttgtttctg atttcaacaa tggtagaaac aaccagctgg
     9661 atgattgttc cagccttctt attcggggcg attttttcag cacttgctgg gaatatagga
     9721 atgcgcgtgg ctactgaggc caacgctcgt accgctgagg cggccaaaac aagtttgcca
     9781 caagcgctga aagtctcttt tggagggggt accgtaatgg gtctcggggt tgctggtttg
     9841 gctgttcttg gattaagttt gttcttcatg ttcttcttag ggcagttcat tactgacgga
     9901 gggaattttt ataatgaaat gacgatcgtt ttggaagcct tagcaggttt ctcactcgga
     9961 gcagaaagca ttgctttgtt cgcgcgagtt gggggtggta tctataccaa agccgctgat
    10021 gttggggctg atcttgttgg gaaagttgaa gcgggaattc cagaagatga tccgcgtaac
    10081 cctgcaacga ttgcggataa cgtaggggat aatgtagggg atgttgccgg tatgggtgca
    10141 gatttgttcg gttcttatgt ggcgacagta ttggcgtcta tggttcttgg aaattatgtg
    10201 attagagata tgtcagtttc tgcaccattc tctgatgctt ttaacaatat gggtcctatt
    10261 cttttaccac ttgtcatcgc aggggtaggg attttggcct caattattgg taccttttta
    10321 gtgagtatca aagacaattc tgccaaagaa gct
//
LOCUS       DPUP01000144            9141 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8447,
            whole genome shotgun sequence.
ACCESSION   DPUP01000144 DPUP01000000
VERSION     DPUP01000144.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9141)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9141)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9141
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            157..1548
                     /locus_tag="DHV98_05125"
     CDS             157..1548
                     /locus_tag="DHV98_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HCK05739.1"
                     /translation="MTQPIDYIKTHKDRFLAELFELLKLPSVSADSAFKNDVIATAEL
                     VAKQLEKAGCEHVTIYPTAGNPIVYGEKIINPELPTVLVYGHYDVQPADPIDLWDSAP
                     FDPIIKKTDLHPDGAIFARGACDDKGQMYMHVKALEFMTQTDQLPCNVKYMIEGEEEV
                     GSKNLGIFVAENKALLTNDIILISDTGMIANDVPSITTGLRGLSYMEVAVTGPNRDLH
                     SGLYGGAVANPINILTKMIASLQDDNNRITIPGFYDDVLELSAAEREAMAQAPFSLEA
                     YCQALDIAEVYGEKGYSTNERNSIRPTLDVNGIWGGYTGEGSKTVIPSQAFAKISMRL
                     VPNQDWEKISALFERHFKAIAPKGVRVAVTTHHGGQSYVTPIDHPGYRAAAAAYQDTF
                     GVAPIPQRGGGSIPIVALFESELGSKTILMGFGLDSDAIHSPNEHFGVWNYLKGIETI
                     PRFFHHFTEISRQ"
     gene            complement(1580..2476)
                     /locus_tag="DHV98_05130"
     CDS             complement(1580..2476)
                     /locus_tag="DHV98_05130"
                     /inference="COORDINATES: protein motif:HMM:PF02955.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05740.1"
                     /translation="MTDITILTCKAYFAPNHPSAYTDNIFLEYRLLKEALERLGLTVR
                     RTYWDDPTYDWSQTRAVVFRTIWDYFERFDEFWPWLEQVQRKTRLINSMELIQWNIDK
                     TYLFDLAERGIPVVPSVLVKKGRHRSLKEIAAPYNWSDLVVKPTIAGGGFLTYKYPSD
                     QLDQVQSEFDALVDQRDMLVQGYIPSITSMGEASLMVFNGEFTHSILKRAKSGDFRVQ
                     DDFGGSVHPYDETPEEVALAQKVMAQCSQVPAYGRVDIVWDDQNQPMVSELEIFEPEL
                     WVRHAPWAADNFARAIAQQLSI"
     gene            2576..3028
                     /locus_tag="DHV98_05135"
     CDS             2576..3028
                     /locus_tag="DHV98_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008635204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HCK05741.1"
                     /translation="MRLSLIILCVILSSCAHVQKKNQENFAQDIIAIKKVMEEQQKAW
                     SRHDLEGFMHGYWANDSLKFYGQSGLTKGWHQTLANYKKSYPKPEDTGVLNFDLLDIS
                     QITPGAYWVMGRYHLKRSVGDAQGSFLVIFKNMEGSWKIVADMSASDQ"
     gene            complement(3060..3419)
                     /locus_tag="DHV98_05140"
     CDS             complement(3060..3419)
                     /locus_tag="DHV98_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ-like protein"
                     /protein_id="HCK05742.1"
                     /translation="MLIDEFRDYCLSKKGVTESMPFDLHTLVFKVGSKMFALASLDQI
                     PLRINLKCNPDRALQLREEFPDLVLPGYHMNKRHWNTVVVQSSNPRDWYLELIDHSYA
                     LVYKTLTLKQRQDLESC"
     gene            complement(3439..4209)
                     /locus_tag="DHV98_05145"
     CDS             complement(3439..4209)
                     /locus_tag="DHV98_05145"
                     /inference="COORDINATES: protein motif:HMM:PF04199.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HCK05743.1"
                     /translation="MRFEFYIAQKKYAVETTESIDLSIAINCNTKQGAKAWYIDGPSK
                     SPVRLGDWIGSVANGGSVNFNDLNLNPHAHGTHTESLGHISPNEEPVEGIFSEFFFEA
                     LVVSIPIETKDRVISGKVVQERLAKVNMDFWPQGPRALILRTLPNSPEKLATNYDHKG
                     WPYLSSDAAQFIAELGIEHLLIDTPSVDPEKDQGALLAHKAFWQWPENPRSRATITEF
                     IYVPDQVQDGPYLLELQTAALVNDATFSRPLIYALHAV"
     gene            complement(4206..5339)
                     /locus_tag="DHV98_05150"
     CDS             complement(4206..5339)
                     /locus_tag="DHV98_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010518643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase"
                     /protein_id="HCK05744.1"
                     /translation="MAGLYYHIPFCKQACHYCDFHFSTQLKSKGKIISAMLEELDLRA
                     HELSVPIRSIYFGGGTPSILSPEEIAGLIERGLALASDPSSLEITLEVNPDDVTPDRI
                     NSWKKAGINRLSLGVQSFDARDLKFMNRAHNAEQAHQALIWVARQFDNYSVDLIYGIP
                     EQDEDSWRNNLSIVQEINPPHLSCYALTREPGTAMDHFMHKGVMSEIDEDQAQREHQY
                     LTNWAQEQGYVNYEFSNFALPGFKSVNNSAYWQGLRYLGIGPSAHSFDGTTRSWNIAN
                     NPLYAKAIEEGRLPITRESLTPIDRYNEYVMTQLRTDSGINLNKVADLFDVKTRENLL
                     KMAARHIDRGLLVFDQEHLRVSAQGKFLTDGIASDLFLVNLGS"
     gene            complement(5344..5895)
                     /locus_tag="DHV98_05155"
     CDS             complement(5344..5895)
                     /locus_tag="DHV98_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HCK05745.1"
                     /translation="MMNERIILGIDPGTTIMGFGLIKVVGKRMEFLQLNELKLIKYDD
                     HYVKLRLIFERTIELIETHHPDEIAIEAPFFGKNVQSMLKLGRAQGVAMAAGLSRQVP
                     ITEYSPKKIKMAITGNGNASKEQVAKMLQQTLGLNELPKNLDSTDGLAAAVCHFYNSG
                     KTEIGKSYSGWSAFVKQNEGRVK"
     gene            complement(5995..7056)
                     /locus_tag="DHV98_05160"
     CDS             complement(5995..7056)
                     /locus_tag="DHV98_05160"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05746.1"
                     /translation="MRHAINQRTIALLVQEIIRAIIFKSGSCNVIVPNTNNASFNNDE
                     ALWISSELGDKLLVMMELHIVNDPPGSGAAGPGGITFVLTEANFRYELIKDYLAVSMG
                     TFWSVFGIQNQDRLGAQNLFSTMPMASGAYLTHFNEKGLRLDGHFELNGWGFNYVMSL
                     GSGFNAYDIRGYNSFDLNSNNAFNTRVSVFPGFQKDLNIGFSYSNGLLFKQDLTASAD
                     SQEFFDNNFEAYGLDALWQINDLKVRSYLISSTQKLANSNETIDLNALGWMSEVSYRI
                     STKGKLGIDAIIPKFRYDFLDKAEFDSQLSDKYQTTGLGLNFQIQNNFILNVDYNWIN
                     EEKIKLNNDRFILRASVNF"
     gene            7079..7321
                     /locus_tag="DHV98_05165"
     CDS             7079..7321
                     /locus_tag="DHV98_05165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05747.1"
                     /translation="MFGVTLKFTGLLLFLKFTLDHLTLWLSYGTLKEKKTWSVSKINW
                     TTQIMAFLIYPFWTLSLTIVSIFYRPYWKGRKIVNK"
     gene            complement(7343..7837)
                     /locus_tag="DHV98_05170"
     CDS             complement(7343..7837)
                     /locus_tag="DHV98_05170"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05748.1"
                     /translation="MLDDYKMVRFLFLMCSIFLVGACQEVTIKKLELTELQAERLSEI
                     QWDVLDALPAPPGCEHAEDSRISSPCSLRFIERSIAEDHELVRALQRQFGDTLDLNLV
                     IDSEGQVSVDRHNKDLELEASQADLLSRISAHLSNRPWSPGIKRGIPVQVHLSYTLVL
                     KSSP"
     gene            7970..9079
                     /locus_tag="DHV98_05175"
     CDS             7970..9079
                     /locus_tag="DHV98_05175"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00072.22,HMM:PF00512.23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05749.1"
                     /translation="MKVLVVEDDKIAQLGIKKILSSGDLSVELVLAENGKEGVDYFDK
                     AEAAGTDFVLLDLNMPVMNGFEFLETIRNNEKLKDLPVVVHTTSDNIEDLNKCRALGI
                     SGGPNRDIQGNVIGSIGIHLDITKLKELEKFREELIMDLTESNDELRNYAHVVSHDLK
                     TPLRSISAAMSWLKEDNQDSLDEMSQSYLAIVDEALLKMDKIISDTLRYSEIKRMSNS
                     ESAVDLNHLVTHLINDLKQSYPDTSININGTLPKLIMNDTKALQVFQNILDNACKYRD
                     PNRASQVTISCGVIFGFYEIQIKDNGIGIPEGSAHRIFEIFQKLNNNKDSNGVGMSIA
                     KKIIETYGGKIWFESEVGKGTTFKFNLPRSLTAKA"
BASE COUNT         2712 a         1983 c         1862 g         2584 t
ORIGIN      
        1 atcctaagtc tagcatgtct accaattcca tcacagccgc aatggattcc ctaaataggg
       61 gtggcaaata tacatattgt ttttaattta catagagcgc cgttttaaaa attatcactt
      121 ttcgtaactt cgtgcacaca aaaaaaattc gacgccatga cccagcctat agattatatc
      181 aaaacacata aagatcgctt tcttgccgag ttatttgaac tgcttaaact cccttcggtc
      241 agtgccgatt ctgcgtttaa aaacgacgtg attgccacag cagagctggt cgccaagcaa
      301 ctcgagaagg ccggttgtga gcacgtaacc atttacccaa ctgcaggaaa tcctatcgta
      361 tatggagaaa aaataatcaa tccagaattg ccgacggtct tggtttatgg ccattacgat
      421 gtgcagcctg cagaccctat tgatctatgg gacagtgccc cttttgaccc catcattaag
      481 aaaacggacc tccatcccga tggggccata tttgctcgtg gcgcctgtga tgacaaagga
      541 caaatgtata tgcatgttaa ggccctagag tttatgaccc aaaccgatca gttgccgtgc
      601 aacgtcaaat atatgattga aggcgaagaa gaagtcggga gtaaaaattt agggattttt
      661 gtcgctgaaa ataaggccct cctgaccaat gatattattt tgatcagcga caccggaatg
      721 attgcaaatg atgttccctc gattacaacc ggtctgcgcg gactctccta tatggaggtc
      781 gccgtgacag gacccaatag agatttgcac agtggccttt acggcggggc agtagccaat
      841 ccaataaaca ttttaactaa aatgattgcc tcactgcaag atgacaacaa cagaattaca
      901 attcctggtt tttatgatga cgtcctagag ctcagcgcgg ccgaacgcga ggccatggct
      961 caagctcctt ttagcttaga ggcttattgt caggctttag acatcgccga ggtttatgga
     1021 gaaaaaggat actccacgaa cgaacgcaat tccatcagac ccacgttaga tgtcaatgga
     1081 atctgggggg gctacactgg agaaggatca aaaacagtaa ttccgagtca agcctttgcc
     1141 aaaataagta tgcgtctggt gcccaatcaa gattgggaaa aaatctctgc gctattcgaa
     1201 cgccatttca aagccatcgc cccaaaaggc gtacgcgtcg cggttaccac acatcacgga
     1261 ggtcagagct atgtcacccc gattgatcat cccggatatc gagcagctgc tgcggcctat
     1321 caagacactt ttggtgtggc gccaatccca caacgcgggg gcggcagtat cccgatagtc
     1381 gctttatttg aatccgaatt ggggagtaaa actatattaa tggggtttgg gctggacagt
     1441 gacgccatcc actctccaaa tgaacatttt ggggtttgga actatcttaa gggcatcgag
     1501 actattccgc gctttttcca tcattttaca gagatttcta gacaatagcg caaacaaatt
     1561 caattgttgc tttactgagc tagatcgata attgctgcgc tatggctctg gcaaaattat
     1621 cggctgccca aggcgcatga cgcacccata attcaggctc gaagatttcc agttcagaaa
     1681 ccatgggctg attttgatca tcccatacga tatcgactct tccataagcc ggaacttggc
     1741 tgcactgagc cattactttt tgtgccaagg cgacttcttc tggggtttca tcatagggat
     1801 gaacacttcc cccaaaatca tcttggactc taaaatctcc tgactttgct cgttttaaaa
     1861 tactatgggt aaattctcca ttaaacacca tcaaggaggc ctcacccatt gacgtgattg
     1921 atggaatata cccttgtacc agcatgtcgc gttggtcgac cagagcatca aattccgact
     1981 gaacctgatc caactgatcg ctcgggtact tataggttag aaatccccct ccagcgatag
     2041 tgggcttaac aaccaaatcg ctccagttat aaggggcggc tatttctttt agagatcgat
     2101 gccggccctt tttaaccaaa acagacggaa ctacaggaat gccccgttct gccaaatcaa
     2161 aaagataagt tttatcaata ttccattgga ttaactccat tgaattgatg agcctggttt
     2221 tgcgttgaac ctgctcaagc catggccaaa attcatcaaa tcgctcaaaa taatcccaaa
     2281 ttgttctaaa aaccaccgcc ctagtttgag accagtcgta agttggatca tcccaatagg
     2341 ttcttctaac ggttaaaccc aaacgttcaa gggcttcctt gagcaatcga tattccaaaa
     2401 aaatattgtc tgtgtacgcc gaaggatggt taggggcaaa ataagcctta caggtaagta
     2461 tggtgatatc cgtcattaat atttgtcgtt atggaacccg tggattcgaa gatatctaaa
     2521 tttttaatcg gtctaaaaaa tcgatgtaca tttatgcaaa caatatcatt taagtatgcg
     2581 tctgtcctta attattctgt gcgtgattct cagtagttgt gctcacgtac aaaaaaagaa
     2641 tcaagaaaat tttgcacaag acattattgc cattaaaaag gtgatggaag aacaacaaaa
     2701 ggcctggtcg cgccatgacc tcgaagggtt tatgcacggt tattgggcaa atgactccct
     2761 caaattctat gggcaatcgg gcttgacaaa aggttggcat caaacccttg ccaattataa
     2821 aaaatcttat cccaagcccg aggatacggg cgtcctaaat tttgacttat tggacataag
     2881 ccaaatcacc cctggggcgt attgggtcat gggacgctat catttaaaac ggagtgttgg
     2941 tgatgcccag ggcagttttc tcgttatttt caaaaacatg gaaggctcat ggaaaattgt
     3001 ggccgacatg agtgccagtg atcagtagac tttggccata gcttgagaaa ctgattcttt
     3061 cagcaggact ccagatcctg acgctgtttt aaggttagcg tcttgtatac caatgcgtaa
     3121 gaatgatcaa ttaattcaag ataccaatct ctggggttgc tgctttgcac caccactgta
     3181 ttccaatgtc gtttattcat gtggtatccc ggcaagacta aatcgggaaa ttcttccctt
     3241 aattgcagcg cccgatccgg attgcattta agattaatcc tgagtgggat ttgatccaaa
     3301 ctggccaagg caaacatttt tgaaccaact ttaaaaacta aagtgtgcag atcaaaaggc
     3361 atagactcag tcaccccctt tttggataaa caatagtcgc gaaattcgtc aatcaacatg
     3421 gagcaggaca atgatggatt agacggcgtg taacgcgtag attaacggtc gagaaaaggt
     3481 cgcgtcattc actagggctg ccgtttgcaa ctccaagagg taaggcccat cttgaacctg
     3541 atctgggaca tatataaatt cggtaatcgt ggctctggat cgagggttct caggccattg
     3601 ccaaaacgcc ttatgcgcta ataatgcccc ttgatctttt tcaggatcaa cagacggggt
     3661 atcaatgagc aagtgttcaa tccctaattc cgcgataaat tgagccgcat cagaacttaa
     3721 atagggccat cccttgtggt cgtaattcgt tgctaatttt tctggactat tgggtaaagt
     3781 cctcagtatt aaagctcggg gaccttgagg ccaaaaatcc atattgactt tggcgaggcg
     3841 ctcctgaact actttaccag aaataactct gtctttggtc tcaatgggaa tactcacgac
     3901 caatgcctcg aagaaaaatt ccgagaaaat accttctaca ggctcttcat tgggtgaaat
     3961 atgccccaaa gattcggtat gggtcccatg agcgtgtgga ttgaggttta aatcattaaa
     4021 attcaccgac cctccgttgg ccacactgcc aatccagtcg cccagacgga caggagattt
     4081 cgagggccca tcgatatacc aggcctttgc tccttgtttt gtgttacagt ttatggcgat
     4141 agataaatca attgactcag tagtctctac ggcgtatttt ttctgagcaa tgtagaattc
     4201 gaacctcatg accctaaatt tactaagaaa agatcactcg ctattccatc agttaaaaac
     4261 tttccttgtg cactaacacg taaatgttct tgatcaaaca ctaataaacc tcgatcgata
     4321 tgtcgtgctg ccattttcag gaggttttca cgcgttttca catcaaaaag atcagcgact
     4381 ttattcaaat taatgccact atccgttctt aattgagtca tcacgtactc attatatcga
     4441 tcgatcgggg ttaatgattc tcgagtaatg ggcaatctcc cttcttcaat tgctttggca
     4501 tacaaaggat tattggcaat attccaactg cgtgtcgttc cgtcgaagct atgagcgctt
     4561 ggaccaatac ccaaatagcg taacccctgc caataggcag agttattgac cgatttgaac
     4621 cctggaagcg caaaattcga aaattcataa tttacgtagc cttgttcttg ggcccaattc
     4681 gttagatact ggtgctctct ttgggcttga tcttcatcaa tttcagacat tacgcctttg
     4741 tgcataaaat gatccatggc tgttccaggc tctcgagtaa gggcataaca agacaaatga
     4801 ggggggttaa tctcttgtac tatggataag ttattgcgcc aagaatcctc atcttgctca
     4861 ggtatgccat aaataaggtc cacactataa ttgtcaaatt gacgagcgac ccaaattagg
     4921 gcttgatggg cttgttccgc gttatgggcg cgattcataa atttaagatc ccgagcatca
     4981 aacgattgaa ctcccagact caagcgatta atccccgcct ttttccaaga atttattcga
     5041 tcaggcgtta cgtcgtcagg gttgacctca agagtgatct caagacttga aggatcactc
     5101 gctagggcaa ggccgcgttc gatgagtcct gctatctctt ccggactcaa tatagagggc
     5161 gtcccaccgc caaaatagat cgatctgatg ggtacggaca attcatgcgc tctaagatct
     5221 aattcctcga gcatcgcaga aattattttg cctttcgatt taagttgagt cgagaaatga
     5281 aaatcacaat aatggcaggc ttgtttgcaa aatggaatat gataatatag tccggccata
     5341 ttgttatttt acacgtcctt cattttgttt gacaaaggca gaccaaccgc tgtagctttt
     5401 tcctatttcc gttttacccg aattgtaaaa atgacatacc gcagccgcaa ggccatcggt
     5461 gctgtctaag tttttgggca attcatttaa accaagggtc tgttgaagca tcttggccac
     5521 ttgctctttg gaggcattac cattacccgt gatggccatt ttaatctttt ttggcgagta
     5581 ttctgtgatg ggtacttgac gtgaaaggcc tgcagccatt gcgactcctt gagcccggcc
     5641 taatttcagc atggactgca cattttttcc gaaaaatggc gcttcaatgg caatttcatc
     5701 agggtgatgg gtttcaatga gttcaatggt acgctcaaaa atcaaacgaa gtttaacgta
     5761 atgatcgtcg tatttaataa gtttgagttc attgagctgc aaaaattcca tgcgcttccc
     5821 cacaactttt ataagtccga atcccataat ggtggtgcct ggatcaattc ccaaaatgat
     5881 gcgctcattc attatcatga aagactactt tgtttttgtc ctcaaccgaa gatatggaaa
     5941 taaaaaagga caagcactgc cattgggtaa aaccccgaaa aataattcgg gtgtttaaaa
     6001 gttcactgag gctctaagaa taaatcggtc gttatttaac tttattttct cttcattgat
     6061 ccagttataa tcaacattca aaataaaatt gttctgaatt tgaaaattaa gacctaaacc
     6121 tgttgtttga tatttatccg ataattgaga atcaaattca gctttatcta aaaaatcata
     6181 tcgaaatttc gggatgattg cgtcaattcc aagttttcct tttgtactga tacggtagct
     6241 tacctcactc atccagccta aggcatttaa atcaatggtt tcattggaat tagccagttt
     6301 ctgggttgat gaaatcaaat acgagcgaac ttttaaatca tttatttgcc agagtgcatc
     6361 aagcccataa gcttcaaagt tattatcaaa aaattcctga gaatctgcac tcgccgttag
     6421 gtcttgtttg aataataagc cattgctata actaaatcct atgttgagat ctttttggaa
     6481 accggggaaa acagaaacac gagtattaaa cgcgttgtta ctatttaaat caaaactgtt
     6541 gtaacctcta atgtcatatg cattaaaacc actaccaagg gacataacat agttaaatcc
     6601 ccatccattt agttcaaaat gaccgtctaa acgaagccct ttttcgttaa aatgagtcaa
     6661 ataggctccg gatgccatgg gcatagtact aaaaagattt tgtgccccca accggtcttg
     6721 attttgtatc ccaaatacac tccaaaaagt gcccatagag actgccaggt agtcttttat
     6781 taattcatat ctaaaattcg cctcagttaa gacaaaagtt attcctccag gtccagccgc
     6841 gccggaaccc ggaggatcat taacaatatg tagttccatc ataaccaata gtttatctcc
     6901 taattcagag ctaatccata gagcctcgtc attattaaat gaagcattat tggtattggg
     6961 aacaattacg ttacaagatc cacttttgaa aataattgcc ctaattattt cttgcaccaa
     7021 cagcgctatt gttctttggt ttattgcgtg cctcacttat gccatcgcga aaaatcccat
     7081 gtttggcgta acgctaaaat tcaccggtct tctactcttt ttaaaattta cactagatca
     7141 ccttacctta tggctcagtt acggcacctt aaaagaaaag aagacctggt cggtctcaaa
     7201 aattaattgg acaacacaaa taatggcctt tctaatttac ccattttgga ctctgagctt
     7261 aaccatcgtc agtattttct accgtcctta ctggaaaggc agaaaaatcg taaacaaata
     7321 agtcattgtt gatgaatctc ctctacggac tgctttttaa caccaaggtg taggaaagat
     7381 ggacctgtac tggaatgccg cgttttatgc cagggctcca tggacggtta gagagatgag
     7441 cggagatacg ggataataaa tcggcttgag aggcctctaa ttcaaggtcc ttattgtgcc
     7501 tatctacact cacttgaccc tcagagtcaa taaccaggtt taagtccagg gtatcgccaa
     7561 attgacgttg taaggccctc actaattcgt ggtcttcggc aattgagcgc tcaataaaac
     7621 gcaaggagca tggggaagat attcttgaat cttctgcatg ttcacatcca ggcggggcag
     7681 gcaatgcgtc gagcacatcc cactgaattt ccgacaaacg ttcggcttga agctcggtta
     7741 actctaattt tttaatggtt acttcctgac atgctccgac aaggaaaatc gaacacatca
     7801 aaaataaaaa tcgaaccatt ttataatcgt ctaacatcga cttaacccat actttgattt
     7861 gtactagttt tcaaaaatca aataaaacct tatcaaaaca gtcaataaga ataattagat
     7921 attatttttg tacatttagt ttatataaat atataacaaa tcggctcaga tgaaagtatt
     7981 ggttgtagaa gatgataaaa ttgctcagtt gggaattaag aagattcttt cctctggcga
     8041 tttgtccgtc gaattagtgc tcgccgaaaa tggcaaagaa ggcgtcgatt atttcgataa
     8101 ggcagaagcc gcaggaactg attttgtgct tcttgatttg aacatgccgg tgatgaatgg
     8161 tttcgagttc cttgaaacta ttcgcaacaa cgaaaagtta aaagatcttc ccgtggtggt
     8221 ccatacaact tcagataaca ttgaagacct taacaagtgt cgtgcgttgg gaatcagcgg
     8281 tggccctaat cgcgatattc aagggaatgt gatcggttct atcggaatcc atcttgatat
     8341 cactaaactc aaagaactgg aaaaatttcg tgaagaactc atcatggatc ttaccgagag
     8401 taatgatgag ctccgtaatt atgcgcatgt cgtatctcat gatttgaaaa cgccactgag
     8461 atccatttct gcggcaatga gctggctcaa agaggacaat caagacagtc tcgatgaaat
     8521 gagtcaatcc tatttagcga ttgtggatga ggcgcttttg aaaatggata aaatcatttc
     8581 agataccttg agatactctg aaataaaaag aatgtccaat tcagaatcgg cagtagatct
     8641 caaccattta gtgactcatt taatcaacga tctcaagcaa agctatccgg atacctcaat
     8701 taacatcaac ggaacgctgc caaagctcat tatgaatgac actaaagccc tccaagtttt
     8761 tcaaaatatc ttggacaatg cttgtaaata tcgcgatcct aacagagcgt ctcaggtcac
     8821 tataagttgt ggggttattt ttggttttta cgagattcaa ataaaggaca atggtattgg
     8881 tatcccagaa ggctccgccc atcgcatttt tgaaatattc caaaaactga acaacaataa
     8941 agactcaaat ggggtaggca tgtccatcgc caaaaagatt attgagactt atggcggtaa
     9001 aatttggttt gaatcagaag tcggcaaagg aaccacattt aagtttaatc tcccgcgttc
     9061 attgaccgcg aaagcttagt tgggttaaaa gcttaggggg tgactacccc aaacaaaaaa
     9121 agcccatcca aacggacaag c
//
LOCUS       DPUP01000145            7303 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5059,
            whole genome shotgun sequence.
ACCESSION   DPUP01000145 DPUP01000000
VERSION     DPUP01000145.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7303)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7303)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7303
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1558
                     /locus_tag="DHV98_05180"
     CDS             <1..1558
                     /locus_tag="DHV98_05180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Clp protease ClpC"
                     /protein_id="HCK05750.1"
                     /translation="DEYRQYIEKDGALERRFQKVVVEPTTAEQTIEILQNIQDKYEAH
                     HNVTYTEEAIKACVHLTNRYMSDRFLPDKAIDALDEAGSRVHITNINVPEKILSLEQK
                     LEAVREHKNSVVKSQKYEEAAKLRDDEKNIEKELAAEQEAWENEAKLHRVAVTEDDVA
                     QVVAMMTGVPVRRIAQDESEKLAALPERIKGKVIGQDEAVAKVVKAIQRNRAGLKDPN
                     KPIGSFIFLGQTGVGKTQLAKILARELFDNDNALVRIDMSEYMEKFAISRLIGAPPGY
                     VGYEEGGQLTEKIRRKPYAVVLLDEIEKAHPDVFNMLQQVLDDGYITDSLGRKIDFRN
                     TIIIMTSNIGSRTLKDFGQGVGFGTAAKTAQADTYAKGVIENALKKTFAPEFLNRIDD
                     VMVFNALEREDIHKIIDIELDKLYARINDLGYRLELSEKAKDYIADKGFDQKYGARPL
                     NRAIQKYVEDVIAEEIITAKVKEGDTITMELNEQADGLTVTVQSASNKKTPGKTQAQE
                     EQTEEPKKSE"
     gene            complement(1582..>1980)
                     /locus_tag="DHV98_05185"
     CDS             complement(1582..>1980)
                     /locus_tag="DHV98_05185"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05751.1"
                     /translation="EGVGSLSIINAPSGYPDINGAGQLSCFFKEGDLFYTNLDSIAGC
                     SPILGNRPPLLALKPQLLVDSGQQLIQLHSGVAFDAIAVYSLTGQIIAEQRISRTTDY
                     VGTLNLAKGMYFLSVANTANGQKSILPFVW"
     assembly_gap    1981..2115
                     /estimated_length=135
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2116..2615)
                     /locus_tag="DHV98_05190"
     CDS             complement(<2116..2615)
                     /locus_tag="DHV98_05190"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05752.1"
                     /translation="MMIFYVVTGLNSVLHGQDYKPLLDNTNEWHVTNCYFGCLTDVYF
                     TDGDTLVEGNNYKVLDGFHYISRSFLLREEVSNQRVYLRKLSGNGIGQEYLLYDFSLQ
                     EGDSFEMFNPITPFPENAGNFVVDSIRLRLLEDGLAYRHYYFSPAPTNNVSDNTCVWV
                     EGVGSLS"
     gene            complement(2714..4225)
                     /gene="hutH"
                     /locus_tag="DHV98_05195"
     CDS             complement(2714..4225)
                     /gene="hutH"
                     /locus_tag="DHV98_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HCK05753.1"
                     /translation="MNPVHYISSEPLSLSRVDTLLSQGFTLEISDDAAKRIDDNYVYL
                     HQKIDQNNAPIYGINTGFGSLCDTAVDPEHLAQLQTNLVRSHACGMGEEVPCELVQLM
                     LLLKIQSLSYGYSAVALSTVQRLVDFYNHGIYPVVYQQGSLGASGDLAPLAHIALALI
                     GEGQVYYQEQKISAQELHQKLGWTPIALQAKEGLALLNGTQFMSAYGVYGVITAKRLS
                     YWADLIAALSLEAFNCNEQPFNPLVHYIRPHQGQIQTAERIRTFLEGSDLGAQPDKKV
                     QDPYSFRCIPQVHGATKDTLKFVAQTMTTEINSVTDNPNVFAHEDVVISAGNFHGQPL
                     ALALDYLGIACAELASISERRTYQLISGQRGLPAFLVAHPGLNRGLMIAQYTAASIVS
                     QNKQMASPASVDSIVSSNGQEDHVSMGANAATKSFKILDNVSSVLAIELMTAVQALEF
                     RKDRRMSEFLTQVVEALRKEIPPLVEDRILHNDMMAAKRFMKTFSMDSELIDL"
     assembly_gap    4377..4480
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4481..5546
                     /gene="gcvT"
                     /locus_tag="DHV98_05200"
                     /pseudo
     CDS             4481..5546
                     /gene="gcvT"
                     /locus_tag="DHV98_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016990515.1"
                     /note="frameshifted; incomplete; missing start; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
     gene            5552..>5729
                     /locus_tag="DHV98_05205"
     CDS             5552..>5729
                     /locus_tag="DHV98_05205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose reductase"
                     /protein_id="HCK05754.1"
                     /translation="MPKRNKSIERILIIGGSGYLGRALYREFQSFYEAFGTFCYPDEF
                     WENHGAFYNYNSTKD"
     assembly_gap    5730..5939
                     /estimated_length=210
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6001..6642
                     /locus_tag="DHV98_05210"
     CDS             6001..6642
                     /locus_tag="DHV98_05210"
                     /inference="COORDINATES: protein motif:HMM:PF04321.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05755.1"
                     /translation="MWSAHDAGLAAMEELVQYAYVHKTHITLLSNVMVFDAVDQHPSQ
                     PKHRQQSLTQTGKYFIDLEKLIQKLPDDQWLIARLAMVIGINSPVVQDIKMKLAQDEP
                     IEVFPNLIVSATTRDMVVKQLHYLINRKACGILHCASTDLIHHIDLVTEICSLLGRER
                     PRLTHVYNSNKETYLALMSSEEKWPSHLQISIHEVITQGTLSHIETTKSLLKS"
     gene            6735..>6838
                     /locus_tag="DHV98_05215"
     CDS             6735..>6838
                     /locus_tag="DHV98_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCK05756.1"
                     /translation="MGRAFEFRKARKMKRWSAMSKAFTRIGKDIVMAV"
     assembly_gap    6839..6967
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6968..>7303
                     /locus_tag="DHV98_05220"
     CDS             <6968..>7303
                     /locus_tag="DHV98_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HCK05757.1"
                     /translation="DIVMAVKEGGADPDGNSRLRAVIQNAKAVNMPKDNIERAIKRAS
                     DKNQGDYKEVVFEGYAPHGIAVLVETATDNNTRTVANIRSYFNKCDGSLGTSGSVVFM
                     FDHVCNFRI"
BASE COUNT         2024 a         1521 c         1524 g         1654 t
ORIGIN      
        1 cgatgagtac cgacagtata tcgaaaaaga tggggcttta gagcgtcgtt tccaaaaagt
       61 cgtggtcgaa cccaccacgg cagaacagac cattgaaatt ttacaaaaca ttcaggacaa
      121 atacgaagcc catcacaatg taacctatac cgaagaagcg atcaaagcct gcgtgcattt
      181 gaccaatcgc tacatgagtg atcgttttct acccgataag gccatcgatg ctttagatga
      241 ggccggttca cgggtgcaca taaccaatat taacgtccct gagaaaattt tgagtttaga
      301 acaaaaactc gaggcagtgc gcgaacacaa aaattctgta gtcaagagtc aaaaatacga
      361 ggaagcggcc aagctgcgcg acgatgagaa aaacatcgag aaggagcttg ctgcggagca
      421 agaagcctgg gaaaacgagg cgaaattgca ccgtgtcgca gttacggaag acgacgtggc
      481 tcaagttgta gccatgatga ctggtgttcc cgtgcgccga attgcccagg acgaaagtga
      541 aaaactagcc gccctacccg agcgaattaa aggaaaagta atcggacaag atgaggcggt
      601 ggctaaagtg gtcaaggcga ttcagcgaaa ccgtgctgga ttaaaggatc caaacaaacc
      661 catcggttcg tttattttct taggacagac cggagtcggt aaaacacaat tggccaagat
      721 tttggcgcgt gaattgtttg ataacgacaa cgctttggtg cgcatagaca tgagtgaata
      781 catggaaaaa tttgccatat caaggcttat cggtgctcct ccgggatatg tggggtatga
      841 agaaggcggt caattaaccg agaaaatacg gcgtaaacct tacgctgttg ttttactcga
      901 tgaaattgag aaagcccatc cagatgtctt caacatgctt cagcaagtgc tggacgacgg
      961 ctacattacc gacagtctcg ggcgcaaaat agattttcgc aacaccatca ttatcatgac
     1021 ctcaaatatc ggatcccgta ccctgaaaga ctttggtcaa ggggttggtt ttggtacagc
     1081 cgccaaaacg gcacaagccg atacttacgc caaaggggtt attgaaaatg cgcttaaaaa
     1141 gacctttgcc cctgagtttt taaaccgaat cgatgatgtc atggtcttta atgccctaga
     1201 gcgtgaagac atacacaaga tcatcgatat cgaattggac aaactctatg cgcgcattaa
     1261 cgacctaggc tatcgcttag aattgagtga aaaagccaaa gactatattg ccgataaagg
     1321 gtttgatcaa aaatacgggg cacgaccctt gaacagagcc attcaaaaat acgtagaaga
     1381 tgtcatcgca gaagaaatca tcaccgcaaa ggtaaaagaa ggcgacacca tcactatgga
     1441 acttaatgaa caggccgatg gattgaccgt gacggttcaa agcgccagca acaagaaaac
     1501 accagggaag actcaagcgc aagaagagca gaccgaagag cccaagaaat cagaataatt
     1561 caaaggattc tgcagcggga tttaccaaac aaaaggcaaa attgactttt ggccgtttgc
     1621 cgtattggct accgaaagaa agtacattcc ttttgctaag ttcaacgtcc cgacataatc
     1681 cgtagttcgg gagatccgtt gctctgcaat tatttggcct gtaagggaat acacagcaat
     1741 agcatcaaag gccacgccag agtgcagttg aattaattgt tgccccgagt cgaccaataa
     1801 ttgaggcttt aaagccaata atggcgggcg gttgcctaaa atgggactgc agcccgcaat
     1861 agaatctaaa ttggtgtaaa acaaatcgcc ctccttaaaa aaacaactca gctgtcccgc
     1921 accattgata tcggggtaac cgctcggggc gttgataata gataaagaac ccacgccttc
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnngataa agaacccacg ccttctaccc aaacacaagt attatcactg
     2161 acattatttg ttggtgccgg actaaaataa taatgtctat aagccagacc atcttccagt
     2221 aggcgtaatc ttatgctgtc cacgacaaag ttgccggcat tctcaggaaa tggggtaatg
     2281 gggttaaaca tttcaaagct gtccccctct tgtagactaa aatcatacaa aaggtattcc
     2341 tggccgatcc catttccact gagttttcgc aaataaacac gctgatttga gacctcttca
     2401 cgcaatagaa aacttcgcga gatataatga aatccatcga gaaccttgta gttattccct
     2461 tcaactaggg tgtccccatc agtaaaataa acatcggtta aacaaccgaa atagcaattg
     2521 gttacgtgcc actcgttggt gttgtccaaa aggggcttat aatcttggcc gtgaagcacg
     2581 ctgttgagcc ctgtgaccac ataaaagatc atcataaaca gactgctccc aaaaagaaca
     2641 cgccatcgag aacgctgatc taatcttatt ttatggggtc tataaaaggg tgaaaagtgc
     2701 atcaaatgat aatttacagg tcaattaatt ctgagtccat agaaaaggtt ttcatgaacc
     2761 ttttggcggc catcatgtca ttatgcaaaa tccgatcctc cacaagcggc gggatttctt
     2821 tgcgcaaggc ctcaactact tgagtcaaaa attcactcat gcgcctatcc tttcgaaatt
     2881 caagagcttg cacggcggtc atcagctcaa tagccaacac tgagctaaca ttgtcgagaa
     2941 ttttaaatga ttttgtcgcg gcattagccc ccatactcac atggtcttct tgtccgtttg
     3001 aggaaacaat cgaatcaaca gaggcgggac tcgccatttg tttgttttga ctgacaatac
     3061 ttgccgccgt atattgagca atcataagcc cacgattcag ccctgggtgc gcgaccaaaa
     3121 aggcgggtaa cccacgttgt ccagagatta attgataggt gcgtcgctca gaaatactgg
     3181 ccaattcagc acaagcaatt ccgagataat ctaaagcaag tgccaggggc tgtccgtgaa
     3241 aattccctgc agaaatcacc acatcttcat gggcaaaaac atttggattg tcggttacag
     3301 aattgatttc ggttgtcatg gtttgtgcca caaatttgag cgtgtctttg gtggctccgt
     3361 ggacttgtgg aatacatcta aacgaatacg gatcctgtac ttttttatcg ggttgtgccc
     3421 ctaaatcgct tccctccaaa aatgtacgaa tgcgctcagc agtttgaatt tgcccttgat
     3481 gcggtcttat gtagtgcacc agcgggttaa aaggctgctc attacagtta aaagcctcca
     3541 gagacaaggc cgctataaga tcggcccaat aggaaagtct tttggcggtg ataacaccat
     3601 acaccccata agcactcata aattgcgtgc cattgagtaa ggccagcccc tcttttgcct
     3661 gcagcgcaat cggggtccag cctaattttt ggtgtaactc ttgtgcactt attttttgtt
     3721 cctgataata gacctggccc tccccgatta aggcaagagc aatatgagcc agtggcgcta
     3781 aatcgcctga agcgcccagg ctgccctgtt gataaaccac cgggtaaatc ccgtgattat
     3841 aaaaatctac caaacgttgt acggtgctca aagccactgc gctgtagcca taactcaggg
     3901 actgaatttt gagcagcagc atgagttgga ccagttcaca cgggacctct tcccccatgc
     3961 cacaggcatg cgaacgcacc aaattggttt gtaactgcgc caagtgctcg ggatcgaccg
     4021 ctgtatcgca aagcgagcca aaacccgtat tgatgccgta aatgggcgcg ttgttttgat
     4081 caattttttg gtgcagataa acataattgt catcaatgcg ttttgcggca tcgtcgctta
     4141 tctctagagt aaatccctga gaaagcaaag tgtctaccct tgagagcgaa agcggctctg
     4201 aactgatata atggacagga ttcatgggac caatttagtg ataaaaacaa taaactgaca
     4261 agcgcataaa aagtggcggt tttagtaact ttacggccaa atacgaacgt tcattttatg
     4321 aagcaaactg cccttaccca tatccatcaa gcccttggcg ccaaaatggt tcctttnnnn
     4381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggcgccaaaa tggttccttt
     4501 tgcagggttc aatatgcctg tatcttatca aggcgttaac caagagcacc aatgtgttcg
     4561 agaagcagtc ggtgtttttg atgtttctca catgggtgaa ttttttatca gtggtcctaa
     4621 tgctctggca cttattcaaa aaataagcag taatgatgcc gcagccatga gcgatggcca
     4681 ggcccaatat tcatgtatgc ctaatgaaaa tggaggtatt gtggatgatt taattattta
     4741 tcgattgagc ctagaccatt atatgctcgt ggtaaatgcc tcgaatatcg aaaaggactg
     4801 ggcttggatc aatgcccata acactatggg ggcgatactc gaaaatcgtt ccgatgactt
     4861 ttccctattg gcggtccaag gacccctcgc tcaaacagtg gtgcaaaagt tgaccgatac
     4921 tgatttaaac gatataaaat tttacaggtt caccacaggg cgcgtcgcag gacaaagtga
     4981 tgtgatcatc agcaacacag gatacactga gatcggaaga gcacnntggt agtggcggat
     5041 ttgagcttta ttgtgcaaat cgtcaagtgg aagccatttg gagcgcactt tttgaagtcg
     5101 gagctgagca cggaattgcg ccgattggac tggcggccag ggacactttg cgccttgaaa
     5161 tgggttactg tctctacgga aatgatattg acgatactac ctctccaata caagcagggc
     5221 ttggatggat cacaaagttc aacaaggact ttgtcaacag tgccgccatt gctcaagaaa
     5281 aagaagaagg cccaaaaatt aaattatgcg cctttgaact cttagagcgc gggattccga
     5341 gacacggcta ccctattgtt aaagaagatg ggacagaaat aggtcgggtg accagtggaa
     5401 ccatgtcgcc ctcgctcaat aaagggattg gaatgggcta tgtggccata ccctataacg
     5461 ctttggacca aaccatctat atccgtatcc gtcaaaaaca attgccggct aagattgtaa
     5521 aacttccctt ttacaaaaag gtataaaccc agtgcccaaa cgcaataaat caatagagag
     5581 aattctgatt atcgggggca gtggttatct aggaagagcc ctgtatcgtg agtttcagtc
     5641 tttttatgag gcctttggga ccttctgcta ccccgatgaa ttctgggaaa atcatggggc
     5701 cttttacaat tataatagca ctaaagaccn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc
     5941 actaaagacc cgctaacccc gatcttggaa tcgcttgccc cgtcacatgt catcgtgagt
     6001 atgtggagtg cccatgatgc cggtttggcc gccatggagg aattggttca atatgcctat
     6061 gtccataaaa cccatatcac gctgctgtct aatgtaatgg tctttgacgc ggtagaccag
     6121 catccctccc agcccaagca ccgacaacaa agtcttaccc aaacgggtaa atattttatc
     6181 gacctagaaa aactcatcca aaaattacca gacgaccaat ggcttattgc acgtctggcc
     6241 atggtcatcg gaatcaatag ccccgtagtt caagacatta aaatgaaatt ggctcaagat
     6301 gagcccattg aagtttttcc aaacctaatc gtcagtgcca ccaccagaga tatggtcgtc
     6361 aaacaactgc attatttgat caaccgaaaa gcctgcggta tcctgcactg cgccagtacc
     6421 gacctcatcc accacatcga tttagtcact gagatttgca gcctattagg gcgtgaacgc
     6481 cctagactca cccatgtgta caattctaac aaagagactt atttggcgct gatgagttct
     6541 gaagaaaaat ggccgagtca tttgcaaatc agcatacacg aagtaataac acagggcact
     6601 ttgagtcata ttgagaccac caaatcactg ttgaaatcat aaagttatca cgcgctgaaa
     6661 taaggttaat tattttttca atccaagttt tatcgctgct cagtaatttt tatttttgcc
     6721 taaatactta aaccatggga agagcatttg aatttagaaa agcgcgcaaa atgaagcgct
     6781 ggtcagcgat gagtaaagcc tttacgcgta tcggtaagga tattgtaatg gccgtaaann
     6841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6961 nnnnnnnagg atattgtaat ggccgtaaaa gaaggtgggg cagatcctga cgggaattca
     7021 cgcctgcgtg ctgtaattca aaacgctaag gcagtaaaca tgcccaagga caatattgaa
     7081 cgcgccatca aacgcgcctc cgataaaaac caaggagact ataaagaagt ggtttttgaa
     7141 ggctatgcac cgcatggcat cgcggtgtta gtagaaacgg ctaccgacaa caacacgcga
     7201 acggtagcca atatccgctc ctatttcaat aaatgtgacg gaagccttgg gacctcaggt
     7261 tcggtggtgt tcatgtttga ccatgtctgt aatttccgta ttg
//
LOCUS       DPUP01000146            8972 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9362,
            whole genome shotgun sequence.
ACCESSION   DPUP01000146 DPUP01000000
VERSION     DPUP01000146.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8972)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8972)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8972
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..2234
                     /locus_tag="DHV98_05225"
     CDS             <1..2234
                     /locus_tag="DHV98_05225"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05758.1"
                     /translation="PLADGVYSFSGQCSSGSNATVINFDPTANFIGYMNVFETPANGG
                     GFVFGSPWGVPDLKTVIDPTPVDGSATIYPNFNTYDDNPTDPFWVDQSTGLGNKTMEA
                     NTYIDDPSLAQQELIWTGYVLSNTIDPSYQAEAFIKVFNADFSVLKIETAPLVQGEYF
                     EVNYTNVEPGDTFVQYGFYVIGLNASSANEGALGNVVIGAQPAGCGDFSYVNEAPTGS
                     GPPSQIFPDFPDFTSIAVDDVIFTGDAGLICSIDIQGRYSAGAPGLPGDPNSTVQLTI
                     YNDNNGIPGDIRYQESFPGSVDADADGNFTLEPAQVIEATLNPDTRYWISVAAVMEFG
                     LAGQWFWSSATDTNDNAALWQNPGGGFGVCPTWATFAECGVGGGLGPDLLMDIEMVAT
                     DPLTYDVCVGARPIECNTSVFGDTLSATSDVGVAPDCDTTTGAPGVWYKFEDTSGLAS
                     EILLYTCSDNTDYDTKLSVYTGSCGDFTCVVGNDDDCPNFQSSVEFVSDGNTTFYILV
                     HGWNTSVGSFELTMECTLIPPPNNDIVNAIDLLAVGCPFTDEDVAMPAATEEAGTPAG
                     CDISGAAGVWYEFTPEINGFITGTIASPAGISSVTFYTAPDQSSNETDLVHVDYYQNQ
                     CLPGSSATIPVVGGQTYYCFVVNTGGITDIIFDNCQLGTASNEIEGFEFYPNPTRERI
                     NLAAAQNIESVVLYNILGQKMLDINVDATTTELNVAHLSAGAYLMEVTVDGQTGTYKL
                     IKQ"
     gene            2306..3304
                     /locus_tag="DHV98_05230"
     CDS             2306..3304
                     /locus_tag="DHV98_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05759.1"
                     /translation="MPLSLSFVVPVYNRPDELRELLSSMTRLEGSIPFEVVVVDDGSK
                     PGCDEVMREFPGMNIHYYYKENTGPGDSRNYGMKRATGNYFIILDSDCLLSADYLLAV
                     EESLNAEYVDCFGGPDAAHSNFNLRQKAISFVMTSFWTTGGIRGNKRKLKPYEPRSFN
                     MGMSKKAFEISGGFGNLHPGEDPELVQRLWDLGFKTKYIERALVYHKRRITWSSYARQ
                     IYKFGLARSILNVKKPKYASWVFWLPIFVVLLGLTSLILGLLGCFNMLYFVLAYAIFL
                     AFTGMLNLKSFRALFMIPFVFAIQSIAYAIGFIRGWFYLSVLHCDPHKKFPQMFCK"
     gene            3360..>3661
                     /locus_tag="DHV98_05235"
     CDS             3360..>3661
                     /locus_tag="DHV98_05235"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05760.1"
                     /translation="MFLLLATSIWFLTKFSKPLVAEFTLNLEYANFPQQTLVSTDAPK
                     VLLVTVKANGFKLLTEFFSDKSLVIDLSAGRMMQNNKIRFSQDQLLAFCYQKMPAAG"
     assembly_gap    3662..3847
                     /estimated_length=186
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3848..4436
                     /locus_tag="DHV98_05240"
     CDS             <3848..4436
                     /locus_tag="DHV98_05240"
                     /inference="COORDINATES: protein motif:HMM:PF07949.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05761.1"
                     /translation="SIDTKELVVPIDRMAAKEIKVIFQGEVSLSQGFKMIGSPIIEPS
                     EITVYGPSQIIDSMSSIRTTYTRLEGLRTNVSKSIALESLFSNELSRSQDSINWSAQI
                     LEYTQKQIELPVELINVPRGKRLQIFPEMMILSVEIPVNEYALYDKSNFRLICDYTER
                     ISEDSFMIPRLSQLPQGVYKPELSHKKVDYVEFAQ"
     gene            4417..>4515
                     /locus_tag="DHV98_05245"
     CDS             4417..>4515
                     /locus_tag="DHV98_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05762.1"
                     /translation="MLNSHNSPRIVCLTGGIGSGKTTAAALFEDLGV"
     assembly_gap    4516..4648
                     /estimated_length=133
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4649..5162
                     /gene="coaE"
                     /locus_tag="DHV98_05250"
     CDS             <4649..5162
                     /gene="coaE"
                     /locus_tag="DHV98_05250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00152"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HCK05763.1"
                     /translation="YYADRAAKRLMEQDAELRESLIQLLGENVFNNLGQLNRDWIAQK
                     LFNTPELLNRWNAKVHPKVFDDFNRWVSCQEGSYILKEAAILFETGGERNCDLSILIT
                     APEDLRIERVMKRDSWTREQVKERLNRQWSDERKIPLADFVVENLDLKTLNLEIKRLH
                     SQLYKRFSQQ"
     gene            5285..>6723
                     /locus_tag="DHV98_05255"
     CDS             5285..>6723
                     /locus_tag="DHV98_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HCK05764.1"
                     /translation="MNKRLFSLLIGLMSLSLLGIVFVQGYWIRNAFNAKEDQFSLGVR
                     QLLIDVSRQIELRETEDYYQLYSGLVDSIDTPENINVTELIYRIVNEDKNETIIFSDG
                     IIEEDYKLSSYFFEFEFDSIAFKKITNQKTTTKIISSLDDQGQVTETIVDFDRLRDFE
                     RKQFEEAVSNIASRMPLHKRVSAQEIQGLIERQATERGIKSKFEFAVYSNDLATKVRS
                     RYFQLHPQSTYGVPLFVNDSFESQYQLYVNFSDKNREIFNSFFGMALLSLIFTSIIIL
                     TYSNTLSQLMRQRQISQIKTDFINNMTHEFKTPIATINLALDAMKNPKVADDKEFIAR
                     YMKMIRDENRRMHAQVENVLRISKLEKNQLDLPKERIKLHEIIEDAMSHVTLMMDNRS
                     GKLNTNFEALKSSILGNDLHLTNVMVNILDNAIKYSDQAPEITISTENVKDSIILKVA
                     DNGIGMSKAAQKRIFEKFYREPTGDIHNV"
     assembly_gap    6724..6877
                     /estimated_length=154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6878..7015
                     /locus_tag="DHV98_05260"
     CDS             6878..7015
                     /locus_tag="DHV98_05260"
                     /inference="COORDINATES: protein motif:HMM:PF02518.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05765.1"
                     /translation="MHNVKGHGLGLAYVKRILDDHNAEIYVESEKGKGSTFIIKFDLI
                     S"
     gene            7019..7735
                     /locus_tag="DHV98_05265"
     CDS             7019..7735
                     /locus_tag="DHV98_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HCK05766.1"
                     /translation="MEKQNKKILLVEDDPNFGTVLKDYLTMNDYEVIHAKNGMEGFEK
                     FKKDHFDLCILDVMMPYKDGFTLAKEIREKNQEVPIIFLTAKAMKEDVLKGYKIGADD
                     YLNKPFDSEVLLMKIKAIIQRKSSETKGDSKLFDFKFGAFQLNAKLRYLTYKEEKPIK
                     LSPKENDLLRLLALHKNDLMPRELALTKIWRDDNYFTSRSMDVYIAKLRKYLSVDPQV
                     EIINIHGEGFRLVVKGETEL"
     gene            complement(7740..>8573)
                     /locus_tag="DHV98_05270"
     CDS             complement(7740..>8573)
                     /locus_tag="DHV98_05270"
                     /inference="COORDINATES: protein motif:HMM:PRK00091.2-2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HCK05767.1"
                     /translation="LAQYWTCNIISADSRQFYKEMSLGTAVPDNRELSAAPHFLIQHK
                     SIFDDYTVGDFEREALSLIEKFSKNHKRTVVVGGSGLYINALLYGLDDFPEVPKAIRD
                     ELNQELVHYGIGALQEELKRVDPKYYAQVDLMNPQRVIRALEIYRSSGIPFSDLRKSS
                     TKQRPFRFTLVGITAHREEIYERINKRVDQMINLGLTQEVESLIPHKNLNALQTVGYK
                     ELFDYFENKLSLAQAVDLIKQNTRRFSKRQMTWFKKNQDIKWFKRERPLEEIVDFIES
                     R"
     assembly_gap    8574..8701
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(8803..>8972)
                     /locus_tag="DHV98_05275"
     CDS             complement(8803..>8972)
                     /locus_tag="DHV98_05275"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HCK05768.1"
                     /translation="YGIIAVPTGIVSVAYAKTSILEPEYNTQSCPNCSAEGQKDKASF
                     CWNCGHQLHEH"
BASE COUNT         2440 a         1558 c         1774 g         2599 t
ORIGIN      
        1 atccattagc tgatggtgtt tattcattct ctggtcagtg tagttcagga agcaatgcaa
       61 ctgtaattaa ctttgaccct accgccaact ttattggata catgaacgtt tttgaaacgc
      121 cggccaatgg tggtggtttt gtttttggtt ctccttgggg tgtgccagat ctaaaaaccg
      181 ttattgatcc tactcctgta gacgggtcag caactattta tccaaacttc aatacttatg
      241 acgataaccc aacagatccg ttctgggttg atcaaagcac aggtttagga aataagacta
      301 tggaggccaa tacttatata gatgatccat ctttggctca gcaagaacta atttggactg
      361 gctatgtgct ttctaatacg atcgatcctt cataccaagc ggaagccttt attaaggtat
      421 ttaacgcaga tttctctgtt ttgaaaattg aaactgctcc acttgttcaa ggtgaatatt
      481 ttgaagtgaa ttacactaac gtagaaccag gagatacttt tgtacaatat ggtttttatg
      541 ttatcggttt aaatgcgagt tcagccaatg aaggggcatt aggaaacgtc gtaatcggag
      601 ctcagcctgc aggttgtggt gacttctctt atgtaaacga agcgccaacg ggtagtgggc
      661 caccatcaca aattttccct gacttcccag atttcacaag tatcgctgtg gatgatgtaa
      721 tttttactgg tgatgctgga cttatttgtt ctatcgatat acaaggacgt tattctgctg
      781 gtgcacctgg tcttcctggc gatccaaaca gtaccgttca gttaactatc tacaacgata
      841 acaatggtat tcctggtgat atccgttacc aagaatcttt ccctggaagt gttgatgcag
      901 atgcagatgg taacttcacc cttgagcctg ctcaagttat tgaagcgacc cttaaccctg
      961 atacgcgtta ttggatctct gttgctgcag tgatggaatt tggccttgca ggtcaatggt
     1021 tctggagtag tgcgacagac acgaatgata atgctgcatt atggcaaaac ccaggtggtg
     1081 gatttggtgt ctgcccaaca tgggcgacct tcgctgagtg tggtgttggt ggaggattag
     1141 gtccagacct tttgatggat atcgaaatgg tggctactga tccattaacc tatgatgttt
     1201 gtgttggtgc gcgaccaatt gagtgtaaca cttcagtatt tggagatacc ttatcagcaa
     1261 cttctgacgt aggagttgcg cctgattgtg acacaacaac tggtgctcca ggtgtttggt
     1321 ataagtttga ggatacttca ggacttgctt ctgagatctt attgtacact tgtagtgata
     1381 atacggatta tgacaccaag ctttctgttt acactggttc atgtggagac ttcacctgtg
     1441 ttgttggaaa cgatgacgac tgtccaaact tccagtcttc tgttgaattc gtatctgacg
     1501 gaaacacgac tttctacatc ctagttcacg gatggaatac aagtgttgga agctttgagt
     1561 tgaccatgga atgtactttg attccaccac caaataacga tattgttaac gcaattgatt
     1621 tattggctgt aggttgtcca tttactgatg aagatgtggc gatgcccgct gctactgaag
     1681 aagctggaac tcctgcgggt tgtgatatct ctggtgctgc tggtgtatgg tatgagttta
     1741 ctcctgaaat caatggtttc atcactggaa cgattgcttc tccagcgggt attagctctg
     1801 taaccttcta cactgctcct gatcagtcct caaatgagac agatttggta cacgtagact
     1861 attatcagaa ccaatgttta ccaggttcaa gcgcgactat tcctgttgta ggtggtcaaa
     1921 cgtactactg ttttgtagtg aacactggtg ggattaccga cattatcttt gataactgtc
     1981 agttaggtac tgcaagcaat gaaatcgaag gtttcgagtt ctatccgaac ccaacccgcg
     2041 aacgcattaa tcttgctgct gcccaaaaca tagagtcagt tgtgttatac aacattttag
     2101 gtcagaaaat gcttgacatc aatgttgatg caacgactac tgagttaaat gtggctcact
     2161 tatctgcagg tgcttacctt atggaagtaa ctgttgatgg tcaaacgggc acttacaagt
     2221 tgatcaagca ataaataagg tataattagt tatacaagaa agccatcctt aaccggatgg
     2281 cttttttatt gcttattttt gtcttatgcc attgtcgtta tcttttgtcg tccccgttta
     2341 taatcgccct gatgagcttc gggagttgtt gtcttcgatg acgcgactag aggggtcaat
     2401 accgtttgaa gtcgtcgtgg tggatgatgg ttctaagcca ggttgtgacg aagtaatgcg
     2461 tgaatttcct ggaatgaata ttcactatta ttataaggaa aatactggtc ctggtgattc
     2521 tcgaaattat ggtatgaaaa gggccaccgg gaattacttt attattttgg attcagattg
     2581 cttactttcg gcggattatc ttttagcagt ggaagaatcc ttaaatgctg aatacgtgga
     2641 ttgttttggc ggtcctgatg cagcccattc taattttaat ttgcgtcaaa aggccattag
     2701 ttttgtcatg acttcttttt ggaccacagg agggattcgg ggaaacaaac gtaaattgaa
     2761 gccctatgag ccccgcagtt tcaatatggg catgagtaaa aaggcctttg aaatttctgg
     2821 tggctttggc aatttacacc caggtgaaga tccagaactc gttcaacgat tatgggattt
     2881 aggttttaaa accaaatata ttgaacgcgc attggtgtac cataaaagac gcattacctg
     2941 gtcgagttat gcccgtcaga tttataaatt tggattagcc cgcagtattt taaatgtaaa
     3001 gaaaccaaag tatgcttctt gggttttttg gttgccgatc tttgtcgtcc ttttgggact
     3061 cacttcttta attcttgggt tactggggtg ttttaatatg ttatactttg ttttggctta
     3121 tgccattttt ctggctttta ctggaatgct caatctcaaa tcctttagag cactattcat
     3181 gatccccttt gtctttgcga tccaatctat agcctacgcc atcggcttta ttcgcgggtg
     3241 gttttattta agtgtgctcc attgtgaccc tcataaaaag tttcctcaaa tgttttgtaa
     3301 ataagtacac tatgagtttg ttaaaattca agaggaatca aaagctacgg tcgtttttaa
     3361 tgtttttgtt gttggcgacc tcgatttggt ttttgaccaa attttccaag cctttagtgg
     3421 cagaatttac gctaaacttg gaatacgcaa actttcccca gcaaacgctc gtttcgacgg
     3481 atgcccccaa agtgctttta gtaacggtta aggccaatgg ttttaaatta ttgacggagt
     3541 tctttagcga taaaagccta gtgattgatc tttcggccgg acgtatgatg caaaacaata
     3601 aaattcgatt tagtcaggac cagttactgg ctttttgtta tcaaaaaatg cccgccgcag
     3661 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnttc tatcgataca aaagaactgg ttgtgcccat tgatcgcatg gctgcaaaag
     3901 aaattaaagt tattttccaa ggagaggtca gtttatcgca agggtttaaa atgattggtt
     3961 cgccaataat agagcctagt gagatcaccg tttatggtcc ctcccaaata atagatagta
     4021 tgagctcgat tagaacgact tatacgcgcc tagaaggttt aagaactaat gtcagtaaat
     4081 ccattgcctt agaatcgctt ttttcaaatg agctgagtcg atcgcaggac agtattaatt
     4141 ggtcggcgca aattttggag tatacccaaa agcaaatcga attacccgta gaactgatta
     4201 acgttccacg aggaaaaaga ctccaaatat ttccggaaat gatgatctta tctgtggaga
     4261 ttcctgtaaa cgaatacgct ttatatgata aatccaattt tagattgatt tgcgattata
     4321 ccgagcgaat ttctgaagac agttttatga ttcctaggtt gagtcaactg cctcaaggag
     4381 tttataagcc cgaactaagt cataaaaagg ttgattatgt tgaattcgca caatagtcca
     4441 aggatcgtct gtttaacggg cggaatcggc tcaggtaaga ctacagcagc ggcgctgttt
     4501 gaagaccttg gcgttnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4621 nnnnnnnnnn nnnnnnnnnn nnnnnnnntt attatgccga tcgggcggca aaacgtctaa
     4681 tggaacaaga tgcagaactt cgtgaatcat tgattcagct ccttggagaa aatgttttca
     4741 ataacctagg ccaattaaat cgagattgga ttgctcaaaa gctctttaat acccccgaat
     4801 tgctcaatcg ctggaacgca aaagtacatc ccaaggtttt tgatgatttt aaccgttggg
     4861 tctcttgtca agagggatcc tatattttga aggaggcagc tattttattt gagactggag
     4921 gagagagaaa ttgtgacttg agtattttga tcacagcacc agaagatctt agaattgagc
     4981 gtgtgatgaa acgtgattct tggactagag aacaggtaaa agagcgatta aatcggcagt
     5041 ggtccgatga aagaaaaata cctttggccg attttgtcgt tgaaaacttg gatttaaaga
     5101 cgctaaatct tgaaataaag cgccttcatt cacagcttta taaacgtttt tctcaacaat
     5161 aattctctga gggtcaaagt gataaatatc ctttgattct aatataaaaa atgacactca
     5221 ttgggtttgt taagttttgg ttaaagcaaa acatggctcg atgttaaaat cttaatttta
     5281 acatatgaac aaacgattgt tttccttatt aatcggcttg atgtctcttt cacttttggg
     5341 catcgtgttt gttcagggct attggatacg caatgcgttc aacgctaagg aagatcagtt
     5401 ttctttggga gtcaggcaac tattaattga tgtatcgcga caaattgaat taagggaaac
     5461 cgaggattat tatcagttat acagtggtct cgtagacagc attgacactc cagaaaacat
     5521 caatgttact gaattgattt atcgaattgt caatgaagac aaaaatgaaa caattatttt
     5581 ctctgatggt ataattgaag aagattacaa attgtcgtct tacttttttg aatttgaatt
     5641 tgattcaatc gcctttaaaa aaatcaccaa tcaaaagacg accaccaaaa ttatcagctc
     5701 tcttgatgat caaggccaag tgactgagac cattgtagat tttgatcgat tgcgtgattt
     5761 tgagcgaaaa caatttgaag aagcagtatc caatatagcc tcacgaatgc ctttgcacaa
     5821 acgcgtaagt gcccaggaga ttcaagggtt aattgagcgt caagcgactg aacgagggat
     5881 aaaatcaaaa ttcgaatttg cggtgtatag taatgatctg gcgacaaaag ttcgatcgcg
     5941 atattttcaa cttcaccccc aaagtactta cggcgtaccc ttgtttgtca atgattcttt
     6001 tgaatctcag tatcagttat atgtcaactt ctcagataaa aaccgggaaa tattcaattc
     6061 cttttttggg atggcccttc tttcactgat ctttacgtca ataattattt tgacttattc
     6121 caatacgctt tcacaactca tgcgtcaacg tcaaatctct caaattaaga cagattttat
     6181 taataatatg acgcacgaat tcaagacccc tattgcgacg attaatttag ccttggatgc
     6241 catgaaaaat ccaaaagtgg ctgatgataa agaatttatc gcgcgataca tgaaaatgat
     6301 tcgcgatgaa aatcggcgaa tgcacgctca agttgaaaat gttttgcgaa tttctaaact
     6361 cgaaaaaaac caattagatc taccaaagga gcgcattaaa ttgcatgaaa ttatcgaaga
     6421 tgccatgagt catgtcacgc tgatgatgga caatcgctct ggcaaattaa acacaaattt
     6481 tgaggcttta aagtcttcta tattgggcaa tgatttgcac ctgactaacg ttatggttaa
     6541 tattttagac aatgccataa aatattcaga tcaagcccca gaaatcacca taagtacaga
     6601 gaatgttaag gacagcatta ttttgaaagt ggccgataat ggaataggta tgtctaaagc
     6661 agctcaaaaa cgaatatttg aaaaatttta tcgtgaaccc accggtgata ttcacaacgt
     6721 taannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnatt cacaacgtta agggacatgg
     6901 cctgggactg gcctatgtta agcgtatcct ggacgatcac aatgccgaaa tctatgtcga
     6961 aagcgaaaaa ggtaagggga gcacgtttat cattaaattt gacctaatct cttaaaaaat
     7021 ggaaaaacaa aacaaaaaaa ttctcttagt tgaagacgat ccaaattttg gaacggtgct
     7081 caaggattac ctgaccatga atgactatga ggtgattcat gcaaaaaatg gtatggaagg
     7141 ctttgagaag tttaaaaaag atcattttga tttgtgtatt ctcgatgtaa tgatgcctta
     7201 caaggatgga tttactctgg ccaaagaaat tcgagaaaag aatcaagagg tccccattat
     7261 atttttaacg gccaaagcca tgaaagagga tgtgctcaag ggttataaaa ttggtgctga
     7321 tgattattta aacaagccat ttgacagcga ggtcctgctc atgaaaatta aggcgattat
     7381 ccagagaaaa agtagtgaaa caaaagggga tagtaaattg ttcgatttta aatttggtgc
     7441 gtttcagctt aatgcaaaat tgcgttattt gacctataaa gaagaaaagc cgataaaact
     7501 ctctccaaaa gaaaatgatt tattgcgcct cttggctttg cacaaaaatg acttgatgcc
     7561 gagagaactg gctttgacaa aaatttggcg ggatgataat tattttactt cacgtagtat
     7621 ggatgtttac atcgctaaac ttcgaaagta tttaagcgtt gatcctcagg tagaaatcat
     7681 taacatacac ggggaaggtt ttcgattagt ggtgaaggga gaaacggagc tttaatcttt
     7741 tatcttgatt cgataaaatc gacgatttct tcgagtggac gctcacgctt aaaccatttt
     7801 atgtcctggt tttttttaaa ccaggtcatt tgtcttttcg aaaaacgcct tgtgttttgt
     7861 ttgatcaaat cgacagcctg cgctaaactc agtttgtttt caaaatagtc aaacaactct
     7921 ttataaccca ccgtttgtag ggcatttagg tttttatggg gaatgagtga ctcgacttcc
     7981 tgtgttaacc caagattgat catttgatca acgcgcttgt tgatgcgctc ataaatttct
     8041 tctctgtggg cagtaatccc aacgagggta aatctaaaag ggcgttgttt agtcgatgac
     8101 tttctcaaat cagaaaaagg gattccggaa ctccggtaaa tttctagggc ccggatcact
     8161 ctttgcggat tcataagatc cacttgtgca taatatttgg ggtctacacg ctttaactct
     8221 tcctgaagcg caccaattcc gtaatgaact aattcttgat ttaactcatc tcgaatagct
     8281 ttcggaacct cagggaaatc gtccaaaccg tatagaagtg catttatata aagcccagat
     8341 ccacctacaa cgacggtacg cttatggttt ttggaaaatt tttcgatcaa actcaaggct
     8401 tcgcgttcaa aatcacctac tgtataatca tcaaatatac ttttatgttg gatcaaaaag
     8461 tgtggcgcag cactcagctc acgattatcg ggtacggccg tgccaaggga catttcctta
     8521 taaaattgtc gtgaatctgc agagattatg ttacacgtcc aatattgagc taannnnnnn
     8581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8701 naatattgag ctaaatctat cgccaattta gttttgccga tcgccgtcgg acccacgata
     8761 acaattacgt catgtacttt ttccattagt ttctaataac tactaatgtt catgaagttg
     8821 atgcccacaa ttccaacaaa agctggcctt atctttttgt ccttcggcgc tgcaattggg
     8881 gcaggactgc gtattgtatt cgggctccaa aatagaggtt ttggcatagg ctacactgac
     8941 aattcccgtg gggaccgcga tgattccata cc
//
LOCUS       DPUP01000147            4952 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6563,
            whole genome shotgun sequence.
ACCESSION   DPUP01000147 DPUP01000000
VERSION     DPUP01000147.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4952)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4952)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4952
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..485
                     /locus_tag="DHV98_05280"
     CDS             <1..485
                     /locus_tag="DHV98_05280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05769.1"
                     /translation="QLNQMAYCSRLTPDQKENVSMSSALSKSIVQINALIHESEAEIF
                     SDFSEIPEIVFNTKLLESIFKSLIEYSIIHTPAPRKPAIDIFSYQENDENILLIKDNS
                     DGSIMRKLSGPQPALEESSNLDSDILTFNALKLQIEQLGGSLEITANSSVGSSIKISV
                     "
     gene            complement(489..1049)
                     /locus_tag="DHV98_05285"
     CDS             complement(489..1049)
                     /locus_tag="DHV98_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HCK05770.1"
                     /translation="MKSTQAALVILIILVIDQWSKFYIKTHFALHDSVVVFSWFKIYF
                     IENEGMAWGAKIPGHYGKLILTVFRLLAIVGIGYWLCEVIRKQASWVLTLSIALIFAG
                     AMGNIIDSVFYGVFFEHSMGQVAQFLPDGGGYGKWLHGKVVDMFSFSFFNPVFNVADT
                     AISTGVGLLVLFNKKAFPKGQKQEQV"
     gene            complement(1059..1442)
                     /locus_tag="DHV98_05290"
     CDS             complement(1059..1442)
                     /locus_tag="DHV98_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HCK05771.1"
                     /translation="MASEVKTRYTDKELDEFRVLINEKLEKAKEQLALIESAYKNDSN
                     NGTDDTSPTFKAFDEGSEVMSKEANSQLAIRQEKFIRDLKNALIRIENKTYGICRVTG
                     KLIKPERLRIVPHATLSIEAKNMQK"
     gene            complement(1445..4665)
                     /locus_tag="DHV98_05295"
                     /pseudo
     CDS             complement(1445..4665)
                     /locus_tag="DHV98_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295153.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
     assembly_gap    4173..4189
                     /estimated_length=17
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    4666..4767
                     /estimated_length=102
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4768..>4952)
                     /locus_tag="DHV98_05300"
     CDS             complement(<4768..>4952)
                     /locus_tag="DHV98_05300"
                     /inference="COORDINATES: protein motif:HMM:PF00133.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05772.1"
                     /translation="KFKEYKGLNLPECAENILDFWREKSVFEQSIQQRAQATPFVFFE
                     GPPSANGMPGIHHVMAR"
BASE COUNT         1344 a         1163 c          942 g         1384 t
ORIGIN      
        1 accagctcaa tcagatggct tattgttccc gactcacccc agatcaaaaa gagaacgtat
       61 cgatgagctc tgccttgagt aaaagcatcg ttcaaatcaa tgcgctcatc cacgaatctg
      121 aagccgagat cttctctgat ttctcagaaa tccctgagat tgtattcaat accaaactcc
      181 ttgaatcgat tttcaaatct ctaatagaat attcgataat ccatactcct gcaccccgta
      241 aacccgcgat tgatattttt tcatatcagg aaaatgacga aaatattctt ttgataaaag
      301 acaatagcga tggaagcatt atgagaaaac tttcgggacc tcaacccgcg ttggaagaat
      361 caagtaacct agattctgat attttgacct ttaatgcgct taagttacag attgaacagc
      421 ttggaggcag tcttgaaatt accgctaact cgagtgttgg ttcttcgatt aaaattagcg
      481 tttaaaccct aaacctgttc ttgcttttgc cctttgggaa acgctttttt attaaaaagt
      541 acgagtaacc caactccggt gcttattgcc gtatcggcca cattaaaaac tggattaaaa
      601 aaggaaaaag aaaacatatc gacaactttt ccgtgtaacc actttccgta gccaccgccg
      661 tctggtagaa actgagcgac ttgtcccata ctgtgttcaa aaaacacccc gtagaagacc
      721 gaatcaatga tattacccat ggcgccagca aaaattagcg ctatcgataa agtcagaacc
      781 cacgaagcct gtttgcgaat gacctcgcaa agccaatagc ctatcccgac tatagccagg
      841 agtctaaaaa cggtcaaaat cagtttaccg taatgaccag gaatttttgc cccccaagcc
      901 attccttcgt tttcaataaa ataaatcttg aaccacgaaa aaaccacaac actgtcgtgt
      961 aatgcaaaat gagtcttgat ataaaattta gaccattgat caatgactaa aatgatcaag
     1021 attacaagag cagcttgggt tgacttcatt actggggtct atttctgcat attttttgct
     1081 tcaatgctca aggtagcatg agggacaatg cgcaaacgct ctggtttaat tagcttaccg
     1141 gtaacacgac agattccgta ggtcttgttc tcgatgcgaa tcaaggcatt tttcaaatca
     1201 cggatgaatt tctcttgtct gatcgctaat tgagaattcg cctctttact catgacttca
     1261 ctgccctcgt caaaggcctt aaacgtaggc gaggtatcgt cagttccatt attgctgtca
     1321 tttttatagg cgctttcaat caaagccaat tgttccttgg ctttttctag cttttcatta
     1381 atcaatactc tgaactcatc gagctctttg tcggtataac gtgtctttac ttcacttgcc
     1441 ataattaaca ctttttaatg ttcagttggg ttgttatttc atcaaattcg actacctgtc
     1501 cctgctcgag ttgcccaaca atattgagtt gatcggctaa tgtctctcca gaaacatagt
     1561 ctccaaaatg ttttaacgcc tcattgagca caggatgctc cacaagacta atttctatac
     1621 gatctgtgac ttctaaacca ctgtctttgc gcaaattctg aatgcgattg accagttcac
     1681 gacagatccc ttcatatttc aaagattcag ttagggtaac atctaaggct accgtaagtc
     1741 cttctgctga agccacaagc catccttcaa tgtcttgaga actaatcagc acatcagacc
     1801 gctctaaaat aacactttta tcggcgatgt tgagactcaa gtgaccattt tgttccaaag
     1861 cattgatctg gtctggacca aattgaccaa tagccgctgc tacagccttc atgttagcgc
     1921 caaatcttgg tcctaatctc ttgaaatctg gcttaatttg cttgaccaaa atcccagaat
     1981 cttcactaat gagttttatt tcttttacat taacttcatg cttgattaaa tcctgaaccg
     2041 caagaatatc ctctttttga gcgtcactta gaacaggaat cataatcgtc tgtaacggct
     2101 gacgcacttt aattttttct ttctgacgca aggacagcac caaggaagaa acggtttgtg
     2161 ccttgcccat ttttcgctcc aaatcagcat caatctgtgt cgcattggct tttggaaaat
     2221 cactcaaatg gaccgaaatc ggactattat tatcgaccac tgaagtcaaa tcacgataga
     2281 gacgatccat aaaaaacggc gctataggcg cgcctaattg cgccacagtc accaaacact
     2341 gataaagggt ctgataggcc gatattttat ctgggccata acttcctttc caatatcttc
     2401 ttctactcag acgaacaaac cagttactca aatgctcttg tacaaattct gaaatcgcac
     2461 gggccgcgcg ggttggctca taagcagtaa aagcatcatc tacggtctga ataagtgaat
     2521 tcagtgctga taaaatccat cgatcaatct cagggcgctc atgatcgggt acctgggcct
     2581 ccttaaaagt gaatccatca acattcgcgt acaaagcgaa aaagccataa gtattgtaga
     2641 gtgtgccaaa gaatttattg cgcacctcag caatcccctc aaggtcaaac tttagattgt
     2701 cccatggatt ggcgttgctg atcatatacc aacgcgtcgc atcgggacca taagtatcta
     2761 aggtctcaaa aggatctaca gcattgccga gacgcttaga catcttttgc ccatttttat
     2821 ccaaaacaag gccattagag actacgtttt tataggcgat gtcgtcaaaa atcatggtcc
     2881 caatcgcatg gagggtgtaa aaccatcctc gcgtctgatc taccccttct gcgatgaaat
     2941 ctgccttgcg ccaagtttgc tcgacctttt ctttattctc aaaaggataa tgccattgtg
     3001 catagggcat acttccactg tcaaaccaca catcgataag gtcactctca cgatacatcg
     3061 gagccccagt tgaggaggtc aaaacaattt gatccacatg gcttttgtgt aaatcaacct
     3121 tggcgtaatt ctgctctgaa aaatctgaag ggtcgaaggt tgcgaaaata tctgcctcca
     3181 tatgcccggc cttgacggcc tcagccatcg cctctttaag ttctttgatc gagccgatgc
     3241 atttagtttc acggccatct tctgtacgcc aaatcggcaa gggaatcccc caaaatctcg
     3301 aacgcgaaag gttccaatca tttgcactgg ccaaccaatt tccaaatcgg ccttcaccag
     3361 tggcttttgg cttccaattg atttcttgat tcaaggcgtg catgcggtct ctgaagtcgg
     3421 tcaccttgat gaaccatgaa tccaatggat aatacaagat aggcttgtcg gtacgccaac
     3481 aattaggata actgtggaca tatttttcaa ccttaaaggc cttattttca atttttaatt
     3541 tgatcgcaat ttcgacatcg acgctttttt cgggggcctc cccttctgga taatattcat
     3601 ttttgacata atatccggcg aaatcagaca cctcagggcg gaatcgtccc tgtaaatcga
     3661 ctaaggggac caattgacct tcttggtctg tgaccaacat aggcggcact tcaggagtgg
     3721 cctccttggc caccttggca tcatcagccc caaatgtggg cgctgtatgc acaatccctg
     3781 taccgtcttc ggtagtgaca aagtctccag cgattacccg gaacgcattt tcgggattat
     3841 tgaagggcag aacataaggc attagttgct catagcgcgc gccgaccatc tccgaaccac
     3901 ttaactgggc cacgacacag tagggcattt ttttagtctg aggatcgacg acatcatggt
     3961 cctgaatttc ttctacttgc tcgaacttgc cagaaaaaac ttttgcgata agcgcttccg
     4021 ccaaaacgac atgaacggac gcaccggtat attggttgaa cgtcttaacg acgacatatt
     4081 taatttttgg ccctacagtc aaggccgtat tactcggtaa ggtccaaggt gtggtggtcc
     4141 aggccaaaaa atgcaagttc ttaaaccctt ggnnnnnnnn nnnnnnnnnc cttgcggtaa
     4201 agaggcctct accgctttaa actgagccac taccgtggta tcggtcgtgt cttgatacgt
     4261 tcctggctgg ttcaactcat gggaactgag tccggttccc gccttgggag aatagggctg
     4321 tatggtgtag cccttgtaca aaagcccttt ttcgtatatc tgtttgagca accaccagac
     4381 ggactccatg tattttggct cgtaagtaat gtagggctgg gtcatgtcga cccaatatcc
     4441 ggagcgctcg gtcaattgat tccatacatc ggtataacgc atgacggctt tgcgacaagc
     4501 ttcattgtat tgttcgactg aaatagtctt accgatatcc tctttggtta tgcctaattc
     4561 tttttcaaca ccaagttcaa taggcaatcc gtgggtgtcc catcccgcct tacgatcaac
     4621 gcgataccct ttttgggttt tgtaacggca aaaaatatct ttgatnnnnn nnnnnnnnnn
     4681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4741 nnnnnnnnnn nnnnnnnnnn nnnnnnnctc gcgccatcac atggtgaatt cctggcatac
     4801 cattggccga tggaggccct tcaaaaaaga caaaaggcgt ggcttgtgca cgctgctgaa
     4861 tgctctgttc aaacacagat ttttcacgcc aaaaatcaag tatattttca gcacattccg
     4921 gcaaatttaa tcccttgtat tccttgaatt ta
//
LOCUS       DPUP01000148            5999 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16953,
            whole genome shotgun sequence.
ACCESSION   DPUP01000148 DPUP01000000
VERSION     DPUP01000148.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5999)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5999)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5999
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..376
                     /locus_tag="DHV98_05305"
     CDS             <1..376
                     /locus_tag="DHV98_05305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HCK05773.1"
                     /translation="FLTQWTAHGTDLTAGFDLPYDRFLVIGLNQDQAAASGCSIDASV
                     RFIQSLQDELGVDLLDKMNVTFYSGDFIAHKSLIEFKKMAKNKSVSRNTVVFNNLVNT
                     KEEYLNYWEVPAHESWHNRFLP"
     gene            409..3390
                     /locus_tag="DHV98_05310"
     CDS             409..3390
                     /locus_tag="DHV98_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylglucosaminidase"
                     /protein_id="HCK05774.1"
                     /translation="MNRILLFICFSFYFSWTYAQDNTPADFTPDPLLASEDLQGQEHW
                     VDSVYARMSLDQKLGQLLMIDAFSQEGPEKREKLETLIKNYHVGGVIFSKGGPLRQAH
                     WLNHFQEISQIPLLVAMDAEWGLAMRLDSTYAFPWNMTLGAIKNTELIQKTGQHIGEH
                     LKRMGVHINFAPVVDLNTNPANPIIGNRAFGSDPKQVTESAQAFMRGMMSAGVMANAK
                     HFPGHGDTDKDSHKTLPTVAFSRDRIKSVELYPYSPLIRSGLGSVMVAHLNVPKLTGK
                     RGWPTSLSKPVVTDLLQTEMGFKGLVFTDALNMKGVADFKNPADIALGALDAGNDVLL
                     IPEDVPTTIERLVWAYNHQKLTEQRLSHSVKKILRAKYLLGAHVFKPINRENLVQDLN
                     RPEDNALHLTLMESAVTLLENKKQFLPLTINQEEKVAYVGLGEDSGAVFFDQLRQYKN
                     ITNIKATTLDECLNQLKGFDRVIIGVHMSNENPWKSHKLSNQVKVWVHEIARAHKTLL
                     TLFAKPYALNDLDAVSNLEAVILAYQNSFFGQKAAAELIFGAIKAQGHLPVDLRHWPQ
                     GSGLSTSERPMLKYGIPEGVGVSSDGLKVVDSLVDLGLAQGMFPGAQVLIARKGRIIY
                     HRAAGYHTYDSLQGVKTTDRYDLASLTKILATLPLVMKQFDQGDLTMETTVGSMLPEF
                     KESNKDSITLLRMLSHYAGFQAWIPYYRATVDSVTAMPLSKYYRTTPTIIEETLGLNN
                     DSIVRYAFDVPVANDLYMRRDYRDSIIAQIKESEGLPKVIYKYSDLPFYLLKKYIEQK
                     SNRSLDTLAYDQFYGPMGAWSMDFKPKSKAVLQDIVPSEQDDYFRHQTIHGDVHDPGA
                     AMLGGVGGHAGLFANALDVAKMMQMYLWKGSYGGQQWISAETIDRFNTCYFCTEEVRR
                     GVGFDKPQLEEEGPTCGCVSMTSFGHSGFTGTFAWADPEAEVVYVFLSNRTYPTAENR
                     ALISSNLRTEIQAALYEAIID"
     gene            3427..4566
                     /gene="bshA"
                     /locus_tag="DHV98_05315"
     CDS             3427..4566
                     /gene="bshA"
                     /locus_tag="DHV98_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008634538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HCK05775.1"
                     /translation="MNIAIVCYPTFGGSGVLATELGIALADMGHQVHFVTYKQPFKLA
                     LLSHHVHFHEVAVPDYPLFRYQPYELALSSKLVNVVKAHNIELLHVHYAIPHAYAGYM
                     AQQMLLEEGIKIPMVTTLHGTDITLVGNHPFYKPAVTFSINNSDAVTSVSESLKQDTL
                     NHFTIKRPIEVIPNFIDLSKMGQQDGPCERNAMAEPHERIITHVSNLRPLKRLTDVIE
                     IFDQILEQCPARLVIVGDGPDKDRAKALIEQKGIKSKVQFMGNSDEVHKILCLTDLFL
                     LPSEIESFGLAALEAMACRVPVISTNAGGLPEVNKHGFSGYLSDVGDVDAMAKNALSI
                     LKDDKTLDQFKDQARAQAQSFAIELIVPQYERLYAKTIAETAVVK"
     gene            4615..>5546
                     /locus_tag="DHV98_05320"
     CDS             4615..>5546
                     /locus_tag="DHV98_05320"
                     /inference="COORDINATES: protein motif:HMM:PF01565.21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HCK05776.1"
                     /translation="MELSTRKVFDFEDLDQKLSGSCHWDDLHLMMYATDASVYRNRPR
                     AVVYPKTDQDIAVVLKWCSDQEISVTPRAAGTSLAGQCISDGMVLDVSRYLNQIIHFD
                     AEQKTITVQPGLVRDELNRYLKPYGLFFGPNTSTSSRSTIGGMVGNNSSGTTSIKYGV
                     TRDKVLALSGYLVDGDLVSFCRPGFNPKRQQQPNTANEHKVNKAIGSDRKEQNLKDSI
                     FELLSPEKTRQQILQQYPKPSIHRRNTGYAMDLLAAQWDQEEPNPLDLDLLPLFCGSE
                     GTLMVSTAITLSLDALPPEQNALVVLQYAGMEEC"
     assembly_gap    5547..5732
                     /estimated_length=186
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5733..>5999
                     /locus_tag="DHV98_05325"
     CDS             <5733..>5999
                     /locus_tag="DHV98_05325"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05777.1"
                     /translation="VTAMNHDLYTCELIDDVVLDCTAQNSLYTAYRFFVKDTPKAVLF
                     CELRDATLQGLSQQVDQFCHELNQQNRAYDVQVLYGDDIDKAIK"
BASE COUNT         1630 a         1212 c         1348 g         1623 t
ORIGIN      
        1 gtttttaacc caatggacgg cacacggaac ggatttgacg gcaggttttg atttaccgta
       61 tgatcgtttt ttagtgattg gtttgaatca agatcaagcg gccgcttcag gctgtagcat
      121 tgatgcttcg gtgcgcttta ttcagtcgct tcaagacgaa ttgggggttg atcttttaga
      181 caaaatgaat gtcacctttt attcgggtga ttttattgcc cacaaatcat tgattgaatt
      241 taagaaaatg gccaaaaaca aatcggtttc gcgcaatacg gttgtgttta acaatttggt
      301 caacacaaaa gaagagtacc tcaattattg ggaggtgcct gctcatgaaa gttggcacaa
      361 tcgctttttg ccatagtgtc tatttttttg acaagcccac aaaatcttat gaatcgcatt
      421 cttctgttta tctgttttag tttctatttt tcttggactt atgctcaaga taatacccca
      481 gctgatttta ccccagatcc tttgctggct agtgaggact tacagggtca agagcactgg
      541 gtagacagtg tttatgcccg catgagctta gaccaaaaat taggacaact tttaatgatt
      601 gatgcctttt ctcaagaggg tcccgaaaaa agagagaagc tcgagacttt gataaaaaat
      661 tatcatgttg gcggggttat attttctaaa ggaggtcctt tgcgacaagc gcattggctc
      721 aatcattttc aggagataag ccaaattccg cttttggtcg caatggatgc tgaatggggg
      781 ctcgcaatgc gtttagattc gacctatgcc ttcccttgga atatgacttt gggggcaatt
      841 aagaacacgg aactgattca gaaaacaggg caacatatag gagaacatct caagaggatg
      901 ggggtgcata tcaattttgc tcctgtagtt gatctcaata ccaatccagc caatccaatt
      961 atcggtaata gagcttttgg ttctgacccc aagcaagtta ctgaatctgc tcaggcattt
     1021 atgaggggta tgatgtcggc tggagttatg gccaatgcca aacattttcc gggacatggt
     1081 gataccgata aggattctca taaaacctta cccactgtgg cattcagtcg cgatcgtata
     1141 aaatctgttg aactttatcc ctattcaccc ttaattcgtt ctggattggg cagtgtcatg
     1201 gtcgcgcatc ttaacgtccc aaaacttacg ggtaagagag gatggcccac ctccttatcc
     1261 aaacccgtgg ttacggactt gctgcaaact gaaatggggt tcaagggctt agtttttacc
     1321 gatgccctaa acatgaaggg cgtagccgat tttaaaaacc cagccgatat cgccctcggg
     1381 gccttggatg cggggaatga cgttttgtta atccctgaag acgtgccgac cacaatagag
     1441 cgcttagtct gggcctataa ccatcaaaaa ctaactgagc agcgtctgag tcattcggtt
     1501 aaaaagattt taagggccaa atatctgctt ggcgcgcatg tgttcaagcc aataaatagg
     1561 gaaaatctgg ttcaagacct gaatcgtccc gaggataatg cactgcactt gaccttaatg
     1621 gagtctgcgg taacgttact tgaaaacaag aaacaattcc tgcctttaac cataaatcaa
     1681 gaggaaaaag tcgcttatgt cggtctgggg gaagattctg gggcggtgtt ttttgatcaa
     1741 ttgaggcagt acaaaaacat tacgaatatt aaggccacta ctttagatga atgcttgaat
     1801 caacttaaag gctttgatcg tgtcattatc ggggtccata tgtccaacga aaatccatgg
     1861 aaatcccaca agctgtcgaa ccaagttaag gtttgggttc acgaaatcgc tcgggcgcac
     1921 aaaacacttt tgactttgtt tgcaaagccg tatgccttga acgatctgga cgcggtcagt
     1981 aacttagagg cagtaatatt ggcctatcag aatagttttt ttggtcaaaa agccgcggct
     2041 gaattaattt ttggcgcaat taaagctcaa ggacatctgc ctgtagattt gcgtcattgg
     2101 ccacaaggga gcgggctttc gaccagcgaa cgccccatgc tcaaatacgg tatcccagaa
     2161 ggagtagggg tctcctctga tggattaaaa gttgtcgata gcttggttga tttaggactg
     2221 gctcaaggaa tgttcccagg ggctcaagta ctcatcgctc gaaaaggccg aataatatac
     2281 catcgcgcgg cgggatacca tacttatgac agtctacaag gggtaaaaac caccgaccgt
     2341 tatgatttag cttcgttaac taaaatactg gccactttgc cgttggttat gaagcaattt
     2401 gatcagggag acctcactat ggagacgacc gttggttcaa tgctgccaga atttaaagaa
     2461 agcaataagg acagcattac cttgctcagg atgctatccc attatgccgg ttttcaagcc
     2521 tggataccct attacagggc tacggtagat tcagtaacgg cgatgcctct ttcaaagtat
     2581 taccgaacca cccccacaat aattgaggag actcttggac taaataacga ttcaatagtg
     2641 cgttatgctt ttgatgtgcc cgtcgctaat gatttatata tgcgtcgcga ttaccgggac
     2701 agtatcatcg cacagatcaa agaaagcgaa ggcttaccaa aagtgattta caagtacagt
     2761 gacctcccgt tttacctgct taagaagtac atcgaacaaa aaagcaatcg ctcattagat
     2821 actctggcct atgatcaatt ttatggtcca atgggtgcat ggagcatgga ttttaaacca
     2881 aaatccaaag cagtgcttca ggatattgtg cccagtgaac aagatgatta ttttcgacat
     2941 caaacgattc atggcgatgt tcatgaccct ggagcggcca tgctcggtgg agtgggcgga
     3001 cacgccggtt tatttgccaa tgccctagat gtcgctaaga tgatgcagat gtacctatgg
     3061 aaaggcagtt atgggggtca gcagtggatt tctgcagaga ccattgatcg atttaatacc
     3121 tgttatttct gcacagaaga ggtgcgccgg ggcgtaggtt ttgacaaacc gcagcttgag
     3181 gaagaagggc ccacatgtgg ttgtgtttct atgaccagtt ttggtcatag cggatttaca
     3241 ggaacttttg catgggcaga cccagaagct gaagtggttt atgtattttt gtcgaacaga
     3301 acttacccta cagcagaaaa cagagccttg atcagcagta atctgagaac cgaaattcaa
     3361 gcggctttat atgaggcgat tattgattaa gttgtgaggc gtaattctga aatttaacga
     3421 cggcttatga atatcgcgat tgtttgttat cccacctttg gaggtagtgg cgtactggcc
     3481 acagaacttg gaatcgcttt agcggatatg ggacatcaag tgcactttgt gacctataaa
     3541 cagccgttta agttggcctt gctatcccat cacgttcatt ttcatgaagt agcggtaccc
     3601 gattatccat tatttcgtta tcaaccctac gagctagcgt tatccagtaa attagtgaat
     3661 gtggtgaagg ctcataacat tgagcttttg catgtgcatt atgccatccc ccatgcctat
     3721 gcgggttata tggcccagca gatgctttta gaagaaggca tcaaaatccc tatggtcacg
     3781 accttacacg gtacggacat tacattggtt gggaaccacc ccttctacaa gcccgcagta
     3841 acctttagca tcaacaatag tgatgcggta acttcagttt ctgaaagttt aaaacaagat
     3901 acactcaatc attttaccat taaaagacct attgaggtta ttccaaactt tattgatcta
     3961 tcgaaaatgg gccagcaaga cgggccatgt gaacgcaatg ctatggcaga accccatgag
     4021 cggatcatta cccatgtgag taatttgcgg cctctaaagc ggctaaccga tgtgattgag
     4081 atatttgatc aaatcctcga gcaatgtccg gcgcgtttag tcatcgtagg ggatggtcct
     4141 gacaaagatc gagctaaagc acttattgaa caaaaaggga tcaaatcaaa ggttcagttc
     4201 atgggcaata gtgatgaggt tcacaagatt ctctgtttaa ccgatttgtt tttattgcct
     4261 tcggagattg agagttttgg tttagccgct ttagaggcta tggcgtgtcg cgttcctgtg
     4321 atttctacca atgcaggcgg gcttcccgag gtaaataaac atggatttag tggttattta
     4381 tccgatgtgg gtgatgtaga tgccatggca aaaaatgcct tgtctatttt aaaagatgac
     4441 aagacgttag atcaatttaa agatcaagca cgcgctcagg ctcaaagctt cgctatcgag
     4501 ttgatcgtac ctcaatacga gcgtctttat gccaaaacca ttgctgaaac cgcagtggta
     4561 aaataaccaa cttatccctt tagcactcct tctgatttta gttaacttta agccatggag
     4621 ttaagcaccc gtaaggtatt tgattttgaa gatttagatc aaaagttatc aggcagttgt
     4681 cattgggatg atttacacct gatgatgtat gccactgatg cctctgtata tcgcaatcgc
     4741 cccagggcgg tggtttatcc caaaaccgat caggatattg ccgtggtgct taaatggtgc
     4801 tcggaccaag agatatcggt gaccccgcgc gcggcgggga cctccttagc gggtcaatgc
     4861 attagtgatg gaatggttct tgatgtttcc cgttatttaa atcaaattat tcattttgat
     4921 gctgagcaaa aaacgatcac ggtgcagcca ggcttagtcc gagacgaact taatcgatat
     4981 ttaaaaccct atgggctatt ttttggtcct aacacctcga cctccagccg cagtacaatt
     5041 gggggtatgg tcggaaacaa cagtagtggt acgacctcaa taaagtatgg agtcacccgc
     5101 gataaagtat tggccctgtc gggttattta gtcgatggtg acttggtgag tttttgccgt
     5161 ccgggattta atccaaaaag gcaacagcag ccgaacaccg caaatgagca taaggtcaat
     5221 aaggccattg gctccgatag aaaggaacaa aatctaaagg attctatttt tgaattatta
     5281 agcccggaaa aaacccgaca gcaaatatta caacagtatc caaaacccag cattcataga
     5341 cgcaatacag gctatgccat ggatttgctc gctgctcaat gggatcaaga agaacctaat
     5401 ccactggact tagatttact tccgctgttt tgtggtagtg aaggaaccct tatggtttct
     5461 acagccataa ccctaagttt ggatgcgtta ccccctgagc aaaatgcttt agtcgtcttg
     5521 caatacgcgg gcatggaaga atgcatnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggttacgg ccatgaacca tgatctttat
     5761 acctgtgaac tgatcgatga tgtggtttta gattgtaccg ctcaaaacag tctgtatacc
     5821 gcctatcgtt tttttgtcaa agacacccct aaggccgtcc tattttgtga attgcgtgat
     5881 gccacgctac agggcctatc gcaacaagtg gatcaatttt gccacgagct aaatcaacaa
     5941 aatcgggcct atgacgtgca agttttgtac ggagacgata tcgataaagc cattaagtt
//
LOCUS       DPUP01000149           18476 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1956,
            whole genome shotgun sequence.
ACCESSION   DPUP01000149 DPUP01000000
VERSION     DPUP01000149.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 18476)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 18476)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18476
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(56..601)
                     /locus_tag="DHV98_05330"
     CDS             complement(56..601)
                     /locus_tag="DHV98_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HCK05778.1"
                     /translation="MKRRKWFLGLMAAFMLGVTQLQAQIKWMSMNEALAAQEQNPKKI
                     FMDVYTDWCGPCKMLDKNTFTNKRLVRYVNKHYYAVKFDGEGTEAIDYKDFTYTNPNH
                     QPERKGRNAQHFFADALRINAYPSLVFFDENGDLIQALPGYKSAQELEIFLKMIASDQ
                     YKDITTEEAWIQYQETFKSTF"
     gene            complement(601..1143)
                     /locus_tag="DHV98_05335"
     CDS             complement(601..1143)
                     /locus_tag="DHV98_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018944625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HCK05779.1"
                     /translation="MKIRTIIGLFFIFLTTGLMAQEVQWMSMSEALAAQRAHPKKIFV
                     DVYTVWCGPCKLYDRNTFSNPKVAAFINEHFYPVKFNGEGDEVVVYKGKTYDNPKYDP
                     AKAKRRNSSHQFAGYLGINAYPTVVFMDESGGLIKSVRGYRTAQQLELFLRFFGTDLW
                     RSVRTQEAYDDYVANFKPSF"
     assembly_gap    1196..1260
                     /estimated_length=65
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1304..3049)
                     /locus_tag="DHV98_05340"
     CDS             complement(1304..3049)
                     /locus_tag="DHV98_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013409406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK05780.1"
                     /translation="MNTDIENLFKDKVLGHPAGLFVLFFTEMWERFSYYGMRSLLVMF
                     FTASLLDQGWGWPREYAFAIFGTYTSLVYLATLLGGYISDKKIGFRYAILIGALLMTL
                     GHAFMALETEFFIYSGLILLVFGTGFFKPNMTSIISAMYATRSEKKDGAYTIFYMGVN
                     AGAFLGILLCGYMGEQVGWSWGFGLAGIFMLFGLLQFWLAQDIFGSIGLKPKKVDDAS
                     ELGPDEPKLNPFTNLQLLIIALASFIGLAWMINDPVSKISEGAYNLFNFSLAGLPGSS
                     FMILLALVLFIVLLAIRLPGYDKITKDRMLAVMFFAFITIFFWAIFEQAPSSLTIFAR
                     DYTDRMLEGNSAFIFKVVDALVTIVPLAVITWVLFKLFGQIFTRFKWSNIILGLSFII
                     IWAIALYRLNDKFSQDVAEIDASWFGILNSLFIITFAPLFSRWWESKYNPSANMKYAI
                     GMLLLGLGMACVAVGASDIPVGAETASVSIIWLILVYFFHTMGELCVSPVALSYVSKL
                     VPGRMIAIMFGVWYLAVAIGMKLAGVFGEASEEIAQTEGLSSFFWLLTFVAVGLGVFS
                     AVMYPVIKKLMHGVR"
     gene            complement(3063..4400)
                     /locus_tag="DHV98_05345"
     CDS             complement(3063..4400)
                     /locus_tag="DHV98_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017258137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK05781.1"
                     /translation="MTSATTTKEFFGHPRGLFVLFFTEMWERFSYYGMRAILVLYLVS
                     QTDAANAGLGWANDSALALYGWYTMLVYVASIPGGWLADKFFGQKKSVLYGGILLVLG
                     HSVLAIEEMWAFYSGLSLIIAGVGMLKPNISTMVGGLYKPGDIRRDKGFTIFYIGINL
                     GAFLSSLIVGYVGEVMGWHYGFGLAGIGMTLGLIQYVLGQKYLKDVGNYIGASKDEEE
                     IAALNRPLTKIEKDRVVVLFLSFFLVIVFWGAFEQAGGLMNIYAMENTNRMLFGLEVP
                     ASWFQSLNAMFIIFLGTAVAAYWAKRKLRGKLSTSLFKMIIGLIIMGTGFFFMSAAST
                     EFETTGSSAMYWLVLAYLFHTVGELCISPVALSYITKLAPLKYASLMMGVYFAMTGFG
                     NKLAGLLGESASTYGEFTIFTGIALFCITFGLIVLLIRKKLEVLTHGIEDTEH"
     gene            complement(4412..6607)
                     /locus_tag="DHV98_05350"
     CDS             complement(4412..6607)
                     /locus_tag="DHV98_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013306348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HCK05782.1"
                     /translation="MVRRDVRALLAVVIGVFWSASLYAQDRSLTLTEIWNGQFTPAGL
                     QSIRSLSDGGHFTILEKNAAVNAMEINKYDYASGRKTGVIFSSSNYPELTGIFDYELS
                     PDEQKLLIKTQRRAQYRHSYFAQHFLYDLIDKTLVKIEGPDLQEVTFSPDGKYLAFVR
                     SNNLYYWIISEQKRVQVTQDGRQNHIINGLTDWVYEEEFGFVQAYQWSRDSDYLAYLR
                     FDESEVAEFSMDVYGQDLYPTQSVFKYPKAGEKNAQVSLHIHQLNKGSTSDIDLTQWP
                     YEYIPRIKWSKNPDQLAVQLLNRAQNDLVLLQVDMRENQTRVLLQEHDEAYVDIHDDL
                     TFLNDNSFIWPSEQDGWRHLYHYNAQGELIRQLTQGNYDVTAFYGFNPRIGRLYFQSS
                     KRGSIYRDIYSMNISGTNTVRFSQDKGTNEADFSADFSHFIQKYSSVTTPNRFTLNSG
                     LNGSELRVLEDNSVLHDLVNRYGLNPKTFDSIYVNGNWLNTYVIKPKSIDLTKKYPVL
                     MFQYSGPGSQQVADRWNNANDYWHQYLVDQGLIVVCVDGRGTGLKGRDFKKVTQGKLG
                     LYEVQDQIAAAQQIAKWSNVNPDKIGIWGWSYGGFMSANCLFQGEGVFSMAISVAPVT
                     SWRFYDSIYTERYMGLPQDNAQGYDAYAPLDHVSKMNGDLLLVHGTADDNVHVQNSMR
                     LIDALVKANKPFDWLIYPDKNHGIYGGYTRQHLYRKMTDFIQKNLMTNQ"
     gene            6742..8064
                     /locus_tag="DHV98_05355"
     CDS             6742..8064
                     /locus_tag="DHV98_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HCK05783.1"
                     /translation="MTIKTINGFSKLSKKEKIKWLSQTFLNGNAQAADLLSLYWHEDS
                     KRQKRHDEFIENALSNFFLPFAIAPNFNIDGRIYAIPMVIEESSVVAAASNAAKFWLG
                     RGGFKTEVVSTIKSGQIHLNYSGEAQTLFAFFETYKKQLISSVDELSQSMIKRGGGLI
                     DLSLTNESESLSDYYYIDARFNTADAMGANYINSCLETIAETFGVLASNFGGFGQGEQ
                     PEVVMSILSNFVPECLVRVTVRCPVSELAQEGLSGKEFAHKFVRAVDIAQTNPLRAVT
                     HNKGIMNGVDAVVLATGNDFRAVEAGIHAYACRQGQYKSLSKANVDQDHFEFSIELPL
                     ALGTVGGLTKLHPMVGVALSILQEPSAEELMKIVATAGLAQNFAAIRSLVTTGIQKGH
                     MKMHLLNLLSQYNAQESTKIAAIEHFKSNPISARSVAEFVASHQKNDD"
     gene            8054..8980
                     /locus_tag="DHV98_05360"
     CDS             8054..8980
                     /locus_tag="DHV98_05360"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="GHMP kinase"
                     /protein_id="HCK05784.1"
                     /translation="MMTKLHKNGKLLLSGEYAVLDGATALAIPTHYGQKFIFGQNNNP
                     GQLIWRALDHNKALWFEAEYKLDALDIISAHDNELARALQKALRAARSLNPNFLAPSQ
                     GFTAESHLEFPRSWGLGSSSTLIAAIAQWSNTDAFQLSQMSFGGSGYDIAAADSTGPF
                     TYRIKKNVPEVVPTRLNWPFKNKLYFIHRNQKQNSRQSIAHYRAHETRADFIQEISAI
                     TQDMINATSAEEFSALMTLHEQIIAQIIQMKPVKEELFGDFPGAIKSLGGWGGDFIMA
                     LDLELGRQNIRDYFSQKGFPTVIDFDQMIRQE"
     assembly_gap    9121..9227
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(9236..11134)
                     /locus_tag="DHV98_05365"
     CDS             complement(9236..11134)
                     /locus_tag="DHV98_05365"
                     /inference="COORDINATES: protein motif:HMM:PF13616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK05785.1"
                     /translation="MTQVDEYQRNLGPNAAASQAMNLVWDRQLKSLLYDQQVKALGLT
                     ISEEQLNDQLRMTLANNPTFQDENGLYSDARLLEYMAAIQNNARAKQQWDTFLKGVRE
                     SLGQSTYATLVASGMEVSMADGEQLYRFENDKIDIEYLHVPYSSIADEDVTVSESEIK
                     TYIREHAQDFEVDPLVDLEYVIFEESASNEDMEAQKEDLTALIDGFNAADDVAFYVND
                     NSDQNFVDQWVRKEGMAQILRDSLLALPEGDVYGPYRDGSNFKLSKVVATMQMPDSVE
                     ARHILIPVGLSRADSITRSPAEALAFADSLYAELKKNRRKFADFVRAHSSDLGSVEKG
                     GHYDYFGYNTMVAPFRDFCFEGRTGDLGVVESQFGVHIIEIEGQKEKSTAYKVATISR
                     EIEPSEATLSLVFSESAKFEEAARNEGFSVAADQKGLTPRPVNRIGALDANIPGIGNN
                     RSIINWAFQGDVAVGDVKRFNLNESYVVAQVTRKSTEKALMSVAEASATVTPILRKQK
                     KAQIIRQGLSGTTLQELASSQNVTVKTASALTRATPTIAGAGTEPVVVGAAFGVGALN
                     TTELIDGETGVFKVRVLSEQPAVDLENYSSYVNQIKSGLLVNAINTRIFNALKAIADI
                     EDNRADFY"
     assembly_gap    11136..11210
                     /estimated_length=75
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<11211..11397)
                     /locus_tag="DHV98_05370"
     CDS             complement(<11211..11397)
                     /locus_tag="DHV98_05370"
                     /inference="COORDINATES: protein motif:HMM:PF13623.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05786.1"
                     /translation="MAVLNSIRKRGVFLILIIALALFSFILSDIINKGSSAASVQNVV
                     ATVNGTEILREDFMTQVD"
     gene            complement(11488..12741)
                     /locus_tag="DHV98_05375"
     CDS             complement(11488..12741)
                     /locus_tag="DHV98_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin"
                     /protein_id="HCK05787.1"
                     /translation="MEAPLVIILVSLLFSAFFSGMEIAYVSANKIHLEIEKKQNNFIA
                     TVLKRITLRPSKFIATMLVGNNIALVIYGLFMGEVLMHWVPLDGFWGLLAHTFISTLV
                     ILWTAEFLPKVFFQIYANQLVVVLSLPAYIFYLLFSVVSELVIWISDFILRVLFRTPG
                     DNLQLSFSKVELGHYINEQMDSLEIEDKVDSEIQIFQNALEFSDVKAREVMIPRTEVI
                     GVEVLTTPRALSERFTETGLSKILVYQDNLDNILGYVHSFELFKKPEVLSQVLMPVVF
                     IPETMLAKDILQVLTRKRKSIAVVVDEYGGTAGIITVEDIIEELFGEIEDEHDSLALV
                     EEELDQNRWRFSARLEVDYLNETYKLDLPESDQYETLGGLIVHVAEEIPEQGEVIDIE
                     DFTLTILEVSNTKIELVELSRVAAD"
     gene            complement(12745..12939)
                     /locus_tag="DHV98_05380"
     CDS             complement(12745..12939)
                     /locus_tag="DHV98_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05788.1"
                     /translation="MRGKIYKLFEYGYIAMALFSIYLVLTNWSENRERSYMFIIFAVV
                     AVGMYFFKRWFRKNMENRSK"
     gene            complement(12951..13511)
                     /gene="lptC"
                     /locus_tag="DHV98_05385"
     CDS             complement(12951..13511)
                     /gene="lptC"
                     /locus_tag="DHV98_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HCK05789.1"
                     /translation="MRKYKHNLPISAIVFFGLMAFFSCEGTYDQVQQLNLSDERPIAE
                     GQEVNLKYTDSGRLVTNLIAPILLDYSNYEFDYQEFPQGIDIHFFDQDQESTVRSDYA
                     IRYGSSGLVDLRQNVVLTTADGNVLEAQQLYWNQRGQWLFTDQPYRITFSDGSYNDGS
                     RFDANEDFTIFLSRNNQGVQRIVEPE"
     assembly_gap    13526..13577
                     /estimated_length=52
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<13578..>14203)
                     /locus_tag="DHV98_05390"
     CDS             complement(<13578..>14203)
                     /locus_tag="DHV98_05390"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05790.1"
                     /translation="GSVADCDNLIPLYEKNFGDKKEDIAWLKSAASRLNAKDCETPLF
                     YQLVQQLHSLQPSAASAFYLGRLADRDGNNTDAINYYNQAVELETNLNKAADYTFAIA
                     ENYRKRGSYSNARSSYFKVLEQKPSKGICYLRIADMYSKSSNDCGGSVFEKRAINWKA
                     AEMADRAARVDASVAATARATAESYRGRAPSKSDIFAEGMAGKVITIN"
     assembly_gap    14204..14270
                     /estimated_length=67
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<14271..14905)
                     /locus_tag="DHV98_05395"
     CDS             complement(<14271..14905)
                     /locus_tag="DHV98_05395"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05791.1"
                     /translation="MKTKIFLLAFFAILMTTNTSAQDDCTIAVSLFTEPAKIKNYEGA
                     LPHYDKVITSCPQYSVAVYQYAVKMFEYFIEQGDQAKIKDLENAYQLRMKYFPKKSKK
                     GDIMADIAQIKYDNGIGDKLSQYNAFDLAYKTDEPNFKSPKAIYTYFSLVMDLYKDGQ
                     KDIQEVFDLYDIIIEKIEKEEGNYAVQINKMIEKEEAGQKLSSKDQKKLDG"
     gene            complement(14915..>15245)
                     /locus_tag="DHV98_05400"
     CDS             complement(14915..>15245)
                     /locus_tag="DHV98_05400"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05792.1"
                     /translation="TYEDALRFKMGGFYIPDYNSFSNILKRIVYRGGFRFEETGINVN
                     GNAITEFGMSFGLGINLGRTFSNVNIGVEYGGRGTKNNGLVEESFVNIFVGLSLNDKW
                     FEKRLYD"
     assembly_gap    15246..15417
                     /estimated_length=172
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<15418..16140)
                     /locus_tag="DHV98_05405"
     CDS             complement(<15418..16140)
                     /locus_tag="DHV98_05405"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05793.1"
                     /translation="MLKKIFIVMAFAITAPVLGQGTTSPYSFFGIGNLNFRGTVENRL
                     MGGVSTYSDSIHVNLLNPAGLANLKLVNYSIAGSHKFNTLSTALDSERATTTTLDYMA
                     VAFPMGKFGGAFGLLPLTTSGYKLENIDGTNTTQYTGSGGMNKVFFGLGYALTPELNI
                     GVEGNYNFGKIRNNAVTFQDDIQLGTEEDNESDLLGLSMNLGLQYKRVLKGKLNGLAS
                     VSYTPETKFTSENARQIATVLLL"
     gene            complement(16140..16868)
                     /locus_tag="DHV98_05410"
     CDS             complement(16140..16868)
                     /locus_tag="DHV98_05410"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR00671"
                     /note="type III; catalyzes the formation of
                     (R)-4'-phosphopantothenate from (R)-pantothenate in
                     coenzyme A biosynthesis; type III pantothenate kinases are
                     not subject to feedback inhibition from coenzyme A and
                     have a high Km for ATP; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantothenate kinase"
                     /protein_id="HCK05794.1"
                     /translation="MNLVLDLGNTRVKFGVFRHDHLIAHGFWLEKNLLEGFEHLIITY
                     PELNAAIWCQSGADRPLFLDYVSSSLKVIHMNHNLKLPVDNHYKTPKTLGHDRLALVS
                     AAQFHAPGVASLVIDCGSCVTYDFIDPNARYYGGAISPGLAMRYKAMHDYTERLPHLK
                     AQATEAWYGDNTDNSMHQGAFRGLIHEIQGFINQYKQYNPNLTTFLTGGDLEILRDHI
                     KNDIFAHPNFLLEGLNQILLINKD"
     gene            17075..18061
                     /locus_tag="DHV98_05415"
     CDS             17075..18061
                     /locus_tag="DHV98_05415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin"
                     /protein_id="HCK05795.1"
                     /translation="MIFQKFLKPTTLALLAFSFTFVACSDDDENTTPTPEPLNIVETA
                     LETAELSSLVAALQAADGDLVTVLSGGEFTVLAPTNAAFDSFLTANGFADLSEVPTDV
                     LANILLNHVVAGTVMSTDLTAAGAGYTQTNATNMDGDVLSLYFNTSNGVVFNGVSTVA
                     QADIEATNGVIHIVDQVIGLPTIAIFATADPTFETLVAALTRPDLEVPFVTILSSTGA
                     GTPLTAFAPTNDAFGSLLTELGIDDLSQIDVNTLTAVLLTHVVGEANVRAEDLTQDMP
                     VLTLVGENLTVDLTNGPQLVDPNGRVANIIANNVQAYNGVVHVIDKVVLPLL"
     gene            complement(18135..18470)
                     /locus_tag="DHV98_05420"
     CDS             complement(18135..18470)
                     /locus_tag="DHV98_05420"
                     /inference="COORDINATES: protein motif:HMM:PF04264.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05796.1"
                     /translation="MADFDSGNENRDAHALELLDVFDFPNVRFLAKKFTQSGQQVVMQ
                     GLLQFRGVSRDISVTMTVEPALDQYKVFGVFTVQPTLFDMPLPSFMLKDIDDALEVEV
                     SLMFIPSEQ"
BASE COUNT         5347 a         4156 c         3471 g         4964 t
ORIGIN      
        1 caaaagtttt tagacaccta caaattcggg gcaattgagg cgcacgagcc cgagtttaaa
       61 acgtactttt aaatgtctct tgatactgta tccaagcctc ttctgtcgtt atatccttat
      121 actggtcaga ggcgatcatc tttaaaaata tttccagttc ctgagcggac ttatagcctg
      181 gaagggcttg aatcaaatcg ccattttcat caaaaaagac taaactggga taggcattaa
      241 tgcgtaaagc atctgcaaaa aaatgttgtg cgtttcggcc tttgcgctcc ggttgatgat
      301 ttggattcgt gtaagtaaag tctttgtaat ctatagcctc tgtaccttcc ccatcaaatt
      361 ttacagcgta ataatgctta ttgacatagc gcaccaagcg cttattggtg aatgtatttt
      421 tgtcgagcat tttacaagga ccgcaccaat cggtgtacac atccataaaa atcttcttcg
      481 ggttttgctc ttgtgccgcc aaggcctcgt tcatgctcat ccattttatt tgtgcctgaa
      541 gctgagtaac ccccagcata aacgcagcca tcaaccctaa gaaccatttc cgccttttca
      601 ttaaaaactt ggtttaaaat tagcgacata atcgtcatag gcctcttggg tgcgcacact
      661 tcgccaaagg tccgtgccaa aaaaccttaa gaataattcg agttgctggg ccgtgcggta
      721 accgcggaca ctcttgatca aaccacccga ttcatccata aaaacaacag ttgggtaggc
      781 attaatccct aaataaccgg caaattgatg agatgaatta cgccgttttg ctttagctgg
      841 atcatatttc ggattgtcat aagtcttgcc tttatagact acgacctcat ctccctctcc
      901 attgaattta actggataaa aatgttcgtt aataaaagca gctactttag gattgctaaa
      961 ggtattgcga tcgtaaagtt tacaggggcc acaccaaacg gtgtagacgt ccacaaatat
     1021 tttttttgga tgagcacgtt gtgccgcaag cgcctcactc atggacatcc attgaacctc
     1081 ctgagccata agtccagtgg tcaaaaaaat aaaaaataac cctatgattg ttcttatctt
     1141 catttatttt caatcaaaag tcagccctaa tggttaaatc agcccaacag ttaaannnnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 atcagcccaa cagttaaatc agctcaacag ttgaatcacc tgattagcgg accccatgca
     1321 ttaatttctt tatcactgga tacattacgg ccgaaaatac ccctaacccc acggcgacaa
     1381 aggtcagcag ccaaaagaag gaactcaaac cctcagtctg ggcaatttct tcggaggcct
     1441 cgccaaaaac accagcaagt ttcataccaa tggctaccgc taaataccaa accccaaaca
     1501 ttatggcaat catacgacca gggacgagct tactgacata ggacaaggcc actggagaaa
     1561 cgcaaagctc tcccatggta tggaaaaaat agactaagat taaccaaata atactcactg
     1621 aggctgtctc ggcccctaca ggtatgtccg aggcccccac agcaacacaa gccatcccta
     1681 aaccgagtaa aagcatacca atggcatatt tcatgttggc gcttggattg tatttacttt
     1741 cccaccatcg cgaaaataat ggagcaaatg taatgatgaa taaggagttc aaaataccaa
     1801 accaagacgc atcaatctcg gctacatctt gactgaattt atcatttaat cgataaagcg
     1861 caatagccca aattattata aaactcagcc ccaagatgat attcgaccac ttaaaacggg
     1921 taaatatttg accaaaaagc ttgaacaata cccaagtgat aaccgccaat ggaacaatag
     1981 taaccaatgc gtcaaccact ttaaaaatga aggcggaatt cccttcaagc atgcgatcgg
     2041 tataatcacg agcaaagatg gtcaaggaac tcggtgcttg ctcaaaaatg gcccaaaaga
     2101 aaatggtaat aaacgcaaaa aacataacgg ccaacatccg gtccttagtg attttgtcat
     2161 aaccgggtaa tcgtatagcc aagagcacga taaacagaac tagggccaaa agaatcataa
     2221 aggaagaacc tggcagaccg gcaagactaa aattaaataa attataggca ccttcggata
     2281 tttttgacac cggatcgtta atcatccacg ctaaaccaat aaaggacgcc aaggcaataa
     2341 tcagtagttg aagattcgta aatgggttga gcttgggttc atctggaccc agctcagaag
     2401 catcatctac tttttttggc ttaagtccaa tgctgccaaa aatatcttga gccaaccaga
     2461 attgtaataa tccgaagagc ataaaaattc ctgccagtcc aaagccccaa gaccatccta
     2521 cttgttctcc catataaccg cagagcaaga tgcctaaaaa tgctccagcg ttgaccccca
     2581 tatagaaaat cgtatatgcc ccatcctttt tctctgaacg cgtggcgtac atggccgaga
     2641 taatcgaagt catattaggt ttaaagaacc cggttccgaa taccaataag atcaaaccag
     2701 aatagatgaa aaattcagtt tctaaggcca taaacgcatg gcccaaagtc atgagtaagg
     2761 ccccgatcaa aatcgcatat ctgaatccta tttttttgtc cgagatatag cccccgagca
     2821 aagtcgccag atagaccaaa gaggtatagg tgccaaagat ggcaaaagca tattcacgcg
     2881 gccaacccca accttggtcc agtaatgatg cggtaaaaaa catgaccaat aaggaccgca
     2941 ttccataata tgaaaatcgc tcccacattt cggtaaaaaa caatacaaaa agtcctgcgg
     3001 gatgacccag aaccttgtcc ttgaataaat tttcgatatc agtattcata gtggttgttc
     3061 tattagtgtt cggtatcttc tataccatgg gttaatactt ctaatttctt tctgatcaac
     3121 aggacaatca acccgaaggt gatgcaaaat aaagcgattc ctgtaaaaat ggtaaattct
     3181 ccataggtcg atgcagattc tcccaataga cccgcaagtt tgttcccaaa tcctgtcatg
     3241 gcaaaataga cccccatcat cagtgaggcg tattttagcg gggccaattt ggtaatgtac
     3301 gaaagggcca ccggagaaat acaaagctct ccaacggtat gaaataggta agccaaaacc
     3361 aaccaataca tcgcagagga tcctgtagtt tcaaattctg ttgaggcagc ggacataaag
     3421 aaaaatccag ttcccataat gattaaaccg atgatcatct taaaaagtga agtcgacagt
     3481 ttaccccgca acttgcgctt tgcccagtaa gcggccaccg cagttcctaa gaagataatg
     3541 aacatcgcgt ttaaagactg aaaccaagaa gccggcactt cgagtccaaa gagcattctg
     3601 ttggtattct ccatggcata aatattcata agacctcccg cctgttcaaa cgccccccaa
     3661 aaaacaatca ccaagaaaaa cgataaaaat agaaccacca cacggtcttt ttcaatcttg
     3721 gtaagcggac gattcagggc agcaatttct tcttcatctt tagaagcccc aatataattc
     3781 cctacatctt taaggtattt ttgacccaaa acatactgga ttaagcccaa agtcattcca
     3841 attcctgcaa gaccaaatcc gtaatgccag cccataactt caccgacata acccacgatt
     3901 aaactcgaga gaaaagcccc gaggttaatg ccgatataaa atattgtaaa ccctttgtcg
     3961 cgacgaatat caccaggctt atagagccca cctaccattg tcgaaatatt gggcttaagc
     4021 atccctacac cggcgatgat taacgacagt ccagaataga atgcccacat ttcctctata
     4081 gcaagtacac tatgcccaag aaccaaaagg atgccgccat agagcactga tttcttttgt
     4141 ccaaagaact tgtcagccaa ccaccctccg gggattgatg ccacatagac cagcatggta
     4201 taccatccgt aaagtgctaa tgcactatcg ttagcccaac ccaaaccggc gttagccgca
     4261 tccgtttgag agaccagata aagcacgaga atcgcgcgca ttccataata ggaaaagcgc
     4321 tcccacatct ctgtaaaaaa gagcacaaaa agccctctgg gatggccaaa aaattctttg
     4381 gtagtggttg ctgatgtcat atttgttcgt tttattggtt agtcattaag tttttttgaa
     4441 taaaatcagt catttttcga taaagatgct gacgggtata ccccccgtat attccgtgat
     4501 ttttatcggg ataaatgagc caatcaaagg gcttattggc ctttacaagg gcatcaatta
     4561 aacgcattga attttgaaca tggacattgt cgtctgctgt tccgtgcact aagagtaagt
     4621 cgccgttcat ttttgacaca tgatccaaag gggcgtaagc atcataaccc tgggcgttat
     4681 cttgaggaag gcccatatag cgctctgtat agattgaatc gtaaaagcgc caagaggtta
     4741 ctggggccac agagattgcc atagagaaga ccccctcgcc ctgaaaaaga caattagcag
     4801 acataaagcc tccataactc caaccccaaa tccctatttt atcagggttt acgttagacc
     4861 acttggcgat ctgttgtgct gctgcgattt gatcctgtac ttcgtataaa cctaattttc
     4921 cctgggtgac ctttttgaaa tctcgtcctt taagacccgt gccacggcca tcaacacaaa
     4981 ctacaatcag cccttgatcg actaaatatt gatgccaata atcattggca ttattccatc
     5041 gatctgctac ctgctgggaa ccgggtccac tgtattgaaa catcaatact ggatatttct
     5101 ttgtcaggtc aatggactta ggtttgatga cataggtatt gagccaattg ccattgacat
     5161 aaatactgtc aaaagttttt ggattaagcc catagcggtt caccaaatca tgtaaaacag
     5221 aattatcctc taaaacacgc aattctgaac cgttcaagcc cgaatttaag gtaaatcgat
     5281 tcggcgtggt caccgaggaa tatttttgaa taaaatgact gaaatctgca ctaaaatctg
     5341 cctcattggt tcctttatct tgcgaaaatc gcaccgtatt ggttccagag atattcatag
     5401 aatagatatc tctataaatg cttcctcgct tggacgactg aaaatacaag cgtccgattc
     5461 tggggttaaa cccgtagaag gccgtcacgt cgtaattccc ttgagtcaat tgacgaatca
     5521 attctccttg cgcattgtag tggtataaat gacgccatcc gtcctgctca ctcggccaaa
     5581 taaaactgtt gtcattgagg aaggtcaaat catcatgaat atcgacatag gcctcatcat
     5641 gttcctgcaa taacacgcgc gtttgatttt cacgcatatc gacttgaagc aatacaagat
     5701 cattttgggc tctgttgagc aactgaacgg caagctgatc cggatttttg gaccacttaa
     5761 tccgcgggat atattcgtaa ggccactgcg ttaaatcgat atctgacgtg cttcccttat
     5821 tgagttgatg gatatgtaaa gaaacctgcg cgttcttctc acccgctttt ggatacttga
     5881 atacactttg tgttggatat aagtcttgtc cataaacatc cattgaaaat tctgcgactt
     5941 cggattcatc aaaacgcaaa tacgctaagt aatcactatc gcgactccat tgataggctt
     6001 gcacaaaacc aaactcctct tcgtagaccc agtctgtcaa accgttaata atgtgatttt
     6061 gacgaccatc ttgggtcact tgaacccgct tttgctcgga aataatccaa taatacaaat
     6121 tattacttct gacaaaagcc aaatacttcc cgtcaggact aaaagtgacc tcttgtaaat
     6181 cggggccctc tattttaacc agagttttat cgattaaatc atataaaaaa tgctgtgcaa
     6241 aataggaatg cctgtattgg gctcggcgtt gcgttttgat caaaagcttt tgctcgtcgg
     6301 gactcagctc ataatcaaaa atacccgtta attcaggata attactgctg ctaaaaatca
     6361 cccccgtttt tcgacccgaa gcgtaatcat atttattgat ctccatcgcg tttaccgcgg
     6421 catttttctc taagatcgta aaatgtcccc catcggacaa actccttatc gattgaagtc
     6481 cagcaggagt aaactgtcca ttccatattt cggtaagggt taaggaacgg tcttgagcat
     6541 aaagactcgc ggaccaaaaa acaccaatca caacggctaa aagagccctc acatcgcgtc
     6601 gtaccattct gaagctatag gtcgttttaa tttgaattga aatataaggc tttttggatg
     6661 aattttgctg ctccccaatg actaaaacaa ccccttatgc ctcacaaaag acttatattt
     6721 gcagctaaag tggcgtgact catgactatc aaaaccatca acggcttttc aaaactttcc
     6781 aaaaaggaaa aaattaaatg gttatctcaa acctttttaa acggaaatgc gcaggccgca
     6841 gatctgctca gtctttattg gcacgaggat tctaaacgtc agaaacgcca tgatgaattc
     6901 atcgaaaatg cgctttcaaa cttttttctg ccgtttgcta ttgcccctaa tttcaatatt
     6961 gatggccgta tttacgccat acccatggtc atcgaagaaa gttcggtagt tgctgccgcg
     7021 agtaatgccg ctaaattctg gttagggcgt ggtggattta aaacagaggt cgtgagtacc
     7081 atcaagagtg gtcagattca tctcaattat tcgggagagg ctcaaaccct tttcgcgttt
     7141 tttgaaacct acaaaaaaca attgatcagt agtgttgatg aattatctca aagtatgata
     7201 aagcgcggcg gaggcttaat cgacttatct ctgaccaacg aatctgaatc cctaagcgat
     7261 tactattaca tcgatgcccg ctttaatact gcggacgcca tgggggcgaa ttatatcaat
     7321 tcatgccttg agacgattgc cgaaaccttt ggggttttgg cttcaaattt tggtggtttt
     7381 ggtcaaggcg agcaacctga agtggtcatg agcattttgt ccaatttcgt tcctgaatgt
     7441 ttggtccgtg taacggtgcg ttgccccgtt tctgagctcg cccaggaagg ccttagcgga
     7501 aaagaatttg cgcataaatt tgtacgtgcc gttgatattg cccaaaccaa tccactccgc
     7561 gccgtaactc ataacaaagg tattatgaat ggtgtagacg ctgtggtttt ggctacagga
     7621 aatgacttta gggccgttga ggccgggatt catgcctatg cttgtcgaca aggtcaatac
     7681 aaaagccttt caaaggcaaa cgttgatcag gaccactttg aattctcgat agaacttcct
     7741 ttggccttag ggaccgtagg gggactgaca aaactacacc ctatggttgg ggtggccctg
     7801 tcgattttac aagagccttc ggccgaagaa ctcatgaaaa tcgttgctac ggctggactt
     7861 gcgcaaaatt tcgctgcgat tcgttcttta gtgactacgg gcattcaaaa aggtcatatg
     7921 aaaatgcacc ttttgaactt actgagtcaa tacaatgccc aggagtccac taaaatagct
     7981 gccatagaac actttaaaag caatcccatt tcagcgcgca gtgtcgctga attcgtcgca
     8041 tcacatcaaa aaaatgatga ctaaactcca caaaaacgga aagttattgc tctctggaga
     8101 atacgctgta ctcgatggag caaccgccct agccatccca acgcactacg gccaaaaatt
     8161 catttttggt caaaataaca atccagggca actcatttgg cgggcgttag atcacaacaa
     8221 ggcgctttgg tttgaagcag aatataaact tgatgctctg gacattatct ctgcccatga
     8281 caacgagctc gctcgagcgc ttcaaaaagc acttcgtgcg gcacgaagtc tcaatcctaa
     8341 ttttttagcc ccttcacaag gatttactgc tgaaagtcat ttagagtttc cacggtcttg
     8401 gggcttgggc agttcgtcaa ccttaattgc cgcgattgcc caatggagca atacggatgc
     8461 ttttcaatta tcgcagatga gttttggcgg cagtggttat gatattgccg cagctgattc
     8521 cacaggacca tttacctata gaattaagaa aaatgtgcca gaggtcgttc ccactagact
     8581 caattggccc tttaagaaca agctctattt catccatcgc aaccaaaaac aaaatagcag
     8641 acagtccatt gcgcattacc gcgctcatga gactcgtgcc gatttcattc aagaaataag
     8701 tgcgatcact caggacatga ttaacgcaac atccgcagag gaattcagcg ccctgatgac
     8761 cttacacgaa caaattattg cccaaataat tcagatgaag cccgtcaagg aagaattgtt
     8821 tggtgatttt cccggggcaa tcaaaagcct gggaggatgg ggtggtgatt ttattatggc
     8881 ccttgatctc gagcttgggc ggcaaaatat tcgtgactat ttttcacaaa aaggattccc
     8941 tacggtcatt gactttgacc aaatgatacg ccaagaataa cctacaccca ggggttcaaa
     9001 aaccttaaag ctcagcggtt atacaataca tgggcaatta aaaaaaaatg cgcgggccaa
     9061 aggcccgcgc atttttttcc tgtgtgctat aatggatcga accgttctat taatagaaat
     9121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnccg ttctattaat
     9241 agaaatcagc acgattatct tcgatatctg caatggcttt cagcgcatta aagattcttg
     9301 tatttatggc attaacaagc agtccagatt taatctgatt cacataagag gaatagttct
     9361 ctaaatcgac tgctggctgt tcagacaaca cacgaacttt gaatactcca gtctcaccat
     9421 cgatgagttc agttgtattt aaggctccta caccgaatgc agcgccaacc acaacaggct
     9481 ctgttcctgc tccagcaatc gtcggtgttg ctcttgttaa ggcactggcg gtcttaaccg
     9541 ttacattttg gctcgacgcc aactcctgta gtgttgttcc gctcagtccc tggcgaatta
     9601 tttgggcttt tttctgcttg cgcaagattg gggtcactgt tgcggaagct tcagcaacac
     9661 tcattaatgc tttttcagta ctcttgcgtg taacctgagc cacaacatag gattcattta
     9721 aattaaaacg cttcacgtcg cctacggcaa catctccttg aaatgcccag ttgataatgc
     9781 ttctgttatt tccaattcct ggaatattgg catccaaagc cccgattcta tttacgggac
     9841 gaggggttaa ccccttctga tcggccgcaa cggaaaatcc ttcattgcgc gcggcttctt
     9901 caaacttagc cgattctgaa aaaacaaggg atagagtagc ctctgacggc tcgatttccc
     9961 gtgatatcgt cgctacttta taggctgttg acttttcttt ttggccttct atttcaatga
    10021 tgtgcacgcc aaattgagat tctaccaccc ctaaatcacc ggtgcgtcct tcaaaacaaa
    10081 aatctctaaa tggggctacc atagtgttgt atccaaagta atcgtaatgc cccccttttt
    10141 caacactccc caaatcactc gaatgtgcac gcacaaaatc ggcgaatttt cggcggtttt
    10201 tctttagttc agcatagaga ctgtccgcaa aagcaagcgc ttctgcagga gaacgcgtga
    10261 tgctatcggc acgactcagt cccacaggaa ttaaaatatg acgcgcttca actgagtcgg
    10321 gcatttgcat ggttgcaaca accttagaca atttaaaatt actcccatcg cgataaggtc
    10381 cataaacgtc tccttcaggt aaagcgagaa gtgagtctct taaaatctga gccataccct
    10441 ctttgcgcac ccactgatct acaaaatttt gatctgaatt gtcattcaca taaaaggcca
    10501 cgtcgtctgc agcattaaac ccgtcaatca atgccgtcaa atcctctttt tgagcctcca
    10561 tatcctcatt ggacgcagac tcttcaaaaa tgacatattc caggtctacc aaagggtcta
    10621 cctcaaaatc ttgggcatgc tcgcgtatgt aggtcttgat ttcactttca gaaacggtga
    10681 catcttcatc cgcaatactc gagtaaggaa catgaagata ttcgatgtca attttatcat
    10741 tttcaaaacg gtataattgc tcaccatccg ccatagaaac ttccattcca ctggccacta
    10801 aagtagcata ggtcgactgc cctaaactct cgcgtacccc ttttaaaaaa gtgtcccact
    10861 gttgtttggc tcgggcattg ttttggatcg ccgccatgta ctctaaaagg cgtgcatcac
    10921 tgtagagccc attttcatcc tgaaatgtag gattattggc caaggtcatg cgcagttggt
    10981 cattgagttg ttcttcagaa atggtcaacc cgagagcctt aacttgctgg tcgtacaaca
    11041 aagatttcaa ttgacgatcc caaacgagat tcatcgcttg agaggccgct gcgtttggtc
    11101 ctaaattacg ttgatattca tcgacctggg tcatannnnn nnnnnnnnnn nnnnnnnnnn
    11161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn catcgacctg
    11221 ggtcataaaa tcttcacgca aaatctctgt tccattgact gttgctacaa cattctgtac
    11281 actcgctgca ctgctgccct tattgataat atcactcaaa atgaatgaaa acaaggccaa
    11341 agcaatgatg agaatcaaga acacaccgcg cttacgaata ctatttaaaa ctgccatctt
    11401 tagtcttttt tgataggggg cgaaaatacc acttattaac gatttataaa aaactcaaat
    11461 gaaaaaaaac acaaccaaaa cgcaaaatca atctgcagcg actctggaga gttccacaag
    11521 ctcgattttc gtgttggaca cttcaaggat tgtgagggta aaatcttcta tgtcaatgac
    11581 ttctccttgc tctggaattt cctctgccac atggacaatt aatcctccca aggtctcata
    11641 ttgatcactt tctggcaagt ccaatttgta ggtctcattg agataatcca cttccaagcg
    11701 cgccgaaaaa cgccagcgat tttgatccag ctcttcctct accaaagcga gagagtcgtg
    11761 ttcgtcttca atttcaccga aaagttcttc aatgatatcc tccacggtaa taataccggc
    11821 tgtacccccg tattcgtcca caaccacagc gatactctta cgcttgcgcg tgagtacttg
    11881 aagaatatct tttgccagca tggtctcggg aataaatacc acaggcatca aaacttgact
    11941 cagtacctct ggttttttaa agagttcaaa agagtgaaca taacccagga tattatctag
    12001 attatcttga taaaccaaga tttttgacag tcccgtttct gtaaagcgct cgctcaaggc
    12061 acgcggcgtg gtgagtacct caaccccgat tacctctgta cgaggaatca ttacctcacg
    12121 ggctttgaca tcggaaaact caagcgcatt ttgaaaaatt tgtatttcac tatccacctt
    12181 atcctcgatt tccaagctat ccatctgttc attgatgtaa tggcctaatt caaccttact
    12241 aaagctcaat tgcagattgt ctccaggtgt tctgaataaa accctcaata taaaatccga
    12301 aatccaaatc actaattcgg aaaccaccga aaacaataga taaaaaatgt aggccggcaa
    12361 ggatagaaca accactaact gattggcgta aatctgaaaa aaaactttag gcaaaaactc
    12421 cgctgtccat aaaatgacga gcgttgagat aaatgtgtgg gccaaaagcc cccaaaatcc
    12481 atcaagaggc acccaatgca tcaaaacctc gcccataaat aatccgtaga tcaccagcgc
    12541 aatattatta ccgactagca tcgttgcgat aaacttagag gggcgaagcg taattcgttt
    12601 taaaactgta gcaataaagt tattctgttt cttttcaatt tcgagatgaa tcttattggc
    12661 cgaaacatag gcgatttcca ttccggagaa aaaagccgaa aaaagcagtg aaacaagaat
    12721 gattaccagg ggggcttcca tgaattattt ggaacgattt tccatgttct ttctaaacca
    12781 acgcttaaaa aaatacatac cgaccgccac tacagcaaaa atgataaaca tataagaacg
    12841 ctctctattt tcactccaat tggtcaggac taagtaaatc gaaaataaag ccattgcaat
    12901 gtaaccatac tcaaaaagct tataaatctt gccgcgcata taaatgggat ttattcgggt
    12961 tcaacaatac gttgaacccc ttgattattt cttgaaagaa agatagtaaa atcttcattg
    13021 gcatcaaatc gactcccatc gttatacgag ccgtcactaa aggtgattcg ataaggttgg
    13081 tcagtaaaca accattgtcc tctttggttc caatacagtt gttgtgcttc caaaacattt
    13141 ccatcggccg tggtcaatac aacattttga cgcaaatcga caagaccact agagccataa
    13201 cgtatggcat agtctgagcg gaccgtactc tcttgatcct gatcaaaaaa gtgaatgtca
    13261 ataccttggg ggaactcttg gtagtcaaac tcataattgc tgtagtccaa aagtatgggc
    13321 gcaataagat tggtcactaa gcgtcctgaa tcagtatatt ttaaatttac ctcttggcct
    13381 tctgcgatcg ggcgctcatc actcagattt aattgctgta cctgatcata cgttccttca
    13441 caagaaaaaa acgccataag tccgaaaaag actatggcgc taataggtaa attatgtttg
    13501 tattttctca ttaaaggttg ggcccnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13561 nnnnnnnnnn nnnnnnnatt aatggtgatg acctttccgg ccataccttc agcaaaaata
    13621 tcactcttgc tcggagcgcg tcctctataa ctctcagcag tcgctcttgc cgtagcggca
    13681 acagaagcat ctacacgggc cgcacgatca gccatttcag cagctttcca gttaatggct
    13741 ctcttctcaa atacacttcc accgcaatcg ttggaacttt tcgagtacat atcggcaata
    13801 cgcaaataac aaattccttt tgaaggcttt tgttccaata ctttaaagta gctgcttctg
    13861 gcattgctgt aacttcctct tttgcgataa ttctctgcaa tagcgaaggt ataatcggct
    13921 gccttattca aattagtttc gagctcaacg gcctgattat agtagtttat ggcatctgta
    13981 ttgttgccat cgcgatcggc caatcgtcct agataaaagg ctgaggctgc agagggctga
    14041 agtgaatgca attgttgcac caactgatag aataaggggg tttcacaatc tttggcattc
    14101 aaacgactgg cagcactttt aagccaagcg atatcttctt tcttatcccc aaaattcttc
    14161 tcgtacaaag gaattaaatt gtcacaatcg gcaacagatc ccannnnnnn nnnnnnnnnn
    14221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn taaccatcaa
    14281 gtttcttttg atccttgcta ctcaatttct gaccagcctc ctctttttca atcattttgt
    14341 tgatctgtac agcgtagttc ccctcttctt tttcaatctt ctctataatg atatcataaa
    14401 gatcaaagac ttcttgtatg tccttttggc cgtctttata aagatccata accaaggaaa
    14461 aataagtata aatcgctttt gggcttttaa aattaggctc atccgttttg taggccaaat
    14521 caaaagcatt gtactgagac agcttgtcac caataccgtt gtcgtattta atttgggcaa
    14581 tgtccgccat aatatcccct tttttggact ttttagggaa gtatttcata cgcaattggt
    14641 aggcattctc aagatcttta attttggctt gatctccttg ctcaataaag tattcgaaca
    14701 ttttcaccgc gtattgatac acagcgacac tatattgagg acatgaggtg attaccttat
    14761 cataatgagg caatgctcct tcataattct tgattttagc tggttctgta aataaagaaa
    14821 cagcaatagt gcagtcgtct tgagcactgg tgtttgtcgt catcaaaatg gcaaaaaatg
    14881 ccaaaagaaa aatcttagtt ttcataactc tattttaatc gtataatctt ttttcgaacc
    14941 atttgtcatt aagagatagg cctacaaata tattgacaaa tgattcctct accaatccat
    15001 tatttttagt cccacgacct ccgtactcga caccaatatt tacattggaa aatgtccgtc
    15061 ctagattaat ccctaaccca aaagacatgc caaactcggt gatcgcattg ccgtttacat
    15121 ttattccagt ctcttcaaag cgaaatccac cacggtagac aatccgctta agaatgtttg
    15181 aaaatgagtt gtagtccggg atataaaatc cgcccatttt aaagcgcaag gcatcttcgt
    15241 aggtgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    15301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    15361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncag
    15421 caagagtacg gtcgcaattt gacgagcatt ttcagaagtg aatttagttt caggggtata
    15481 actcacagaa gccaaaccat tgagttttcc cttaagtacg cgtttatact gtaggcccaa
    15541 attcatgcta agccccagca agtcactttc gttgtcttct tctgtcccga gttgtatgtc
    15601 gtcttgaaag gtgaccgcat tattgcggat ttttccaaaa ttataattcc cctcaacccc
    15661 tatattcaac tcaggtgtca gggcataacc caggccaaag aacactttat tcataccacc
    15721 acttcccgtg tattgtgttg tattggtgcc gtctatattt tctaatttat agcctgaagt
    15781 cgttaagggc aaaagtccaa aagcgcctcc aaattttccc attgggaacg ccaccgccat
    15841 ataatcgagc gttgtagtcg tagcgcgctc actgtccaaa gcggtgctca gtgtgttaaa
    15901 tttatgactt cctgcaattg aataattaac taatttcaaa ttggccaaac ccgctggatt
    15961 caaaagattt acgtgaatac tatccgaata ggtgctcacg ccgcccatga gtcggttttc
    16021 aacagttccg cgaaaattta aattgccgat cccaaaaaaa gaatagggcg aggtcgtccc
    16081 ctgccccaag accggggcag taatggcaaa tgccatgacg ataaatattt ttttgagcat
    16141 cagtccttgt tgatcaataa aatttggttg agtccttcca ataaaaaatt aggatgggca
    16201 aagatgtcat tttttatgtg atctcgcaaa atttcaaggt ctcctcctgt taaaaatgtc
    16261 gttaaattag gattgtactg cttatattga ttgatgaacc cttgaatttc atgaattaat
    16321 ccccgaaagg ccccttgatg catcgagtta tccgtgttgt ctccatacca tgcttcagtg
    16381 gcttgcgcct ttaaatgcgg caatcgctca gtatagtcat gcatggcctt ataacgcatg
    16441 gccagtccgg gacttatcgc tccgccataa tagcgtgcat tagggtcaat aaaatcataa
    16501 gtcacgcagg acccacaatc aatgactaat gacgcaacac ctggtgcgtg aaattgggcg
    16561 gcactcacta gggctaagcg atcatgccct agtgttttcg gagtcttata gtgattgtct
    16621 acaggcaatt tcaaattgtg attcatgtga atcaccttca aactactgga aacgtaatcc
    16681 aaaaataagg gacgatcggc gccgctctga caccaaatag ccgcgttcaa ctcaggatag
    16741 gttatgatga gatgctcaaa gccttcaagc aaattctttt ctaaccaaaa gccgtgagcg
    16801 attaaatggt cgtgtctaaa cacaccaaac ttgacacgcg tattgcctaa atcgagaact
    16861 aaattcataa aggattcaaa atgataagac gaaaatacaa tttgactggg ttttcctgtg
    16921 tcaattttag gtcaaatttt tcaagcctga tgatttacgc attgtcaact gcctgatttc
    16981 tatgatcttt cattttgttt aacattttta acaaaagatt aaacaaaaaa tgaagataat
    17041 gccctttctt tgtggctcat aaaaacaatt agctatgatt tttcaaaaat ttcttaaacc
    17101 aactaccctt gccttattgg cgttttcatt cacatttgtg gcgtgttccg atgacgacga
    17161 gaacacaaca ccgacaccag aacccctgaa catagttgaa actgctttag aaacagcaga
    17221 gctgagttcc ttggtcgcag cgcttcaagc tgctgatggg gatctagtta ccgtattgag
    17281 cggtggcgag ttcacggttc tcgcaccaac caatgctgct ttcgacagct tcttaacggc
    17341 taatggtttc gctgatttaa gcgaagtccc tacagacgtt ttagccaaca tccttttaaa
    17401 ccatgtcgtt gctggtactg taatgtctac agacctaact gcagccggtg ctggatacac
    17461 gcaaacaaac gcgaccaata tggacggtga tgttttgagc ttgtacttca acacatcaaa
    17521 cggcgttgta ttcaacggtg tgagtacggt tgcgcaagca gacattgaag ctacgaatgg
    17581 tgtgattcat attgttgatc aagtgatcgg tttaccgaca attgcgatat ttgctactgc
    17641 tgatccaacc ttcgagactt tggttgcggc cttaacgcgt cccgatttag aagtgccttt
    17701 tgtgactatt ttaagttcta caggagctgg aacgccattg accgcatttg caccaaccaa
    17761 tgatgcattt ggcagcttat tgaccgaact tggcattgat gatctttctc aaattgatgt
    17821 gaatacattg acggcagttc ttctaacaca cgtggttgga gaagccaatg ttcgcgcaga
    17881 agatttaacc caagatatgc ccgtactaac tttagtcgga gagaatttaa ctgttgatct
    17941 aaccaatggt ccacagcttg ttgacccgaa tggacgtgtg gccaatatca ttgctaacaa
    18001 tgtacaggct tacaacggag tagtacacgt tatcgacaaa gtagttttac cacttctata
    18061 gattagttat tgacgataat agaaaaggcc agcatttgct ggccttttta cgtcttaccc
    18121 tgtccagcat catcttattg ttcactggga ataaacatca gggacacctc gacctctagg
    18181 gcgtcatcga tgtctttaag cataaaagaa ggcaagggca tatcaaataa cgttggttgg
    18241 accgtgaaca ccccgaagac cttatattga tccagcgccg gctcgaccgt catcgtcaca
    18301 gaaatatctc ggcttacgcc gcggaattgt aggagcccct gcatgactac ttgttgaccg
    18361 ctctgggtaa actttttggc caaaaatcga acattgggaa aatcaaaaac gtcgagaagt
    18421 tccaatgcgt gggcatcgcg attttcatta ccactgtcaa agtccgccac cttagc
//
LOCUS       DPUP01000150            4804 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15310,
            whole genome shotgun sequence.
ACCESSION   DPUP01000150 DPUP01000000
VERSION     DPUP01000150.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4804)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4804)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4804
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            198..1955
                     /locus_tag="DHV98_05425"
     CDS             198..1955
                     /locus_tag="DHV98_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HCK05797.1"
                     /translation="MRYLSLLTTIFLLSQSVIGQNTFTNPIIPGGYPDPSICRVGDDF
                     YVVNSSFEYFPGLPIHHSKDLVNWELIGNGLHRPSQASGAVNLVDVQENGGIHAPTIR
                     YNNGTFYIVTTNMYSQADPDNPNDTKQNTNFIITAEHPAGPWSEPYVIENAPGIDPDL
                     FFDDDGKVYFVGTHNPGDVFSSGIGAIWAQELDLENWKLVGERHSLWEGACDKNHTEG
                     PHIYKKDGQYFLLVAEGGTGHHHAVMMASSDHVFGPYSSGLRNPILTSRHLSRNNWVH
                     STGHADIVELEDGRWFMVALGKRNDRDGHSNMARETHLMPVIWEPQIVRWEQVSETKW
                     EPVYTQFPVVAPETGKVERINPLPFANKQQFYNDAFLDNFDTTALRPDWVFRRVPQPN
                     TYSLSANKGHLRLYLKPETFSIRGRYSAMGITQKESQFELAAKMNFSPKKNLEEAGIT
                     VYQKDLNYINLTVQRIGKQHHLKLSVSEKRDRQKTNLSNSETIAGSNVKAYKSKALPN
                     YKGEILLKIASKNGKYLYYYSLDGGASYEKLAETADNILIGMMYTGANVGVYATSNGQ
                     KTNAFADFDWVSYKGFVKR"
     gene            1966..3993
                     /locus_tag="DHV98_05430"
     CDS             1966..3993
                     /locus_tag="DHV98_05430"
                     /inference="COORDINATES: protein motif:HMM:PF03629.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05798.1"
                     /translation="MKKITLLMVLFLIGCQTNSPTELSLINLFNDHMVLQQDTLVSFW
                     GQATKGVKVSLHSSWGAQATTVADETGNWMVQLNTPKADNKSHTVTVKSKKNTIKIED
                     VLMGEVWLASGQSNMEMPMKGFRYAKVHELVEGAEEEIANANYPEIRMFTVKRTIAFE
                     PQENIEGNWAVCTPETLGEFSAVAYYFGKKLYQELNVPIGLIHSSWGGSPAESWVRLD
                     LIEKIKGFENTSKRLEIANDPNTPYNKWVAKHTSVKWDSLIEVDNFKWVDKTHLEFLS
                     SDYNDDAWQDAAVTSIGEAFEKDDFNGIGWIRQQLNIDSLPEGDLVFDLGETDDLYTI
                     FINGEMIGRKEYWGVASNRYTFSSDVLKKGQNTIAIRFIDVWGEGGLNVDRNRGIYVG
                     DKKIIALNEDWKLNMVCYLTGGDFYILESGDEEIALASPDRMPHQSNSPTTLNNGMIA
                     PLVPYTLKGFIWYQGESNQGRAEEYKTLFPAVIDSWRAQWKNEALPFYYVQIAPFAGY
                     GLRTDAAERMTSAELRESQMLTLAKSNVGMAITTDVGDDKLIHPPKKKEVGDRLALWA
                     FNKDYGYTDLVHSGPIYKSVRFNKGRALVSFDHAGSGLYCPDNTIKHFEIAGADGKYY
                     PAKARIIGKEVMVWSNKVPQPKGVRLGWENYFEINLFNKEGLPASSFRSME"
     gene            4007..>4804
                     /locus_tag="DHV98_05435"
     CDS             4007..>4804
                     /locus_tag="DHV98_05435"
                     /inference="COORDINATES: protein motif:HMM:PF00884.21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HCK05799.1"
                     /translation="MMSIQKINFCFLSILLLVLAAACQRETTKRPNIVLLLADDLGHH
                     ELGAYGQQVIQTPHLDALAAKSMRFTDFYAGNSVCSPSRAVLLTGKSSTRVPIRGNAG
                     FFGDDKWEGVYLDADTFTLGEMFKAANYQTAFVGKWHLDDPDTPATWAFGHGFDFAAQ
                     EQWSARFGKRDFNKPGLWVNGYQNHIPYDFKEHDCKDAFYTDTAFEFLDQREQDKPFF
                     LFMSYRAPHSFEGPIRDTLSYAKTDWPKVEQAQAAKVTLQDQQVGRLL"
BASE COUNT         1487 a          924 c         1078 g         1315 t
ORIGIN      
        1 cgcaactgct ggaaacctta tcacagaaat ccatttgagt ttttcaaatg ctgatggttc
       61 tattaccgtg agaaatcccg gatatgacag tgatatcgtt tttggcgcta actgtcaata
      121 atttagtatt tcttaatata aaaagggggc gatagtataa tactatcctc ccttttttta
      181 aattattatt tttaatcatg cgttacttat ctcttctcac aacaatattc ttactcagcc
      241 agtctgtcat tggccaaaat acatttacaa atcccattat tccaggtgga tatcccgatc
      301 cttcaatttg tagagtagga gacgattttt atgttgtcaa ttcttctttt gaatattttc
      361 ctgggcttcc catccatcac agtaaagact tggtcaactg ggaattaatc gggaacggac
      421 tgcaccgtcc aagccaagcc tctggcgcgg taaaccttgt agacgttcaa gaaaatggtg
      481 gcatccacgc cccaacgatt cgctacaaca acggtacttt ctatattgta actaccaata
      541 tgtattcaca agcagatcct gacaatccaa acgacacaaa acaaaacacc aattttataa
      601 tcacagcaga gcacccggct ggaccctggt ctgagcctta cgtgattgag aatgcacccg
      661 gtattgatcc tgatttgttc tttgacgatg acggtaaggt gtattttgtt ggcactcaca
      721 accctggaga cgttttctct agtggtatag gcgccatttg ggcacaggaa ttagatctcg
      781 aaaattggaa acttgtagga gaacgccatt ccctttggga aggcgcctgt gacaaaaacc
      841 acacggaagg accacatata tataaaaaag atggccagta tttcttattg gtagcggaag
      901 gcggaacagg tcaccaccat gctgttatga tggcgtcaag cgaccatgtt tttggacctt
      961 attcaagcgg attgcgaaat cccatactca catctaggca tctgtctaga aacaattggg
     1021 ttcacagcac aggacacgcc gatattgttg aattagaaga cggcaggtgg tttatggttg
     1081 cccttggcaa aagaaatgat cgagacggac attccaatat ggctagagaa acgcatttga
     1141 tgcccgttat ttgggaacca caaattgtgc gttgggagca agtcagcgaa accaaatggg
     1201 agcccgtata tacccagttc ccagtagttg cacccgaaac agggaaggta gaacgcatta
     1261 acccactacc ctttgcgaat aagcaacaat tttataacga tgcatttctt gataattttg
     1321 acacaactgc gttgagacca gattgggttt ttagaagggt gccacaaccc aatacctatt
     1381 cgctttctgc aaataaggga catttgagat tataccttaa acccgaaaca ttttcaataa
     1441 gaggccgcta tagtgccatg ggtatcaccc aaaaagaaag tcagtttgaa cttgcggcaa
     1501 aaatgaattt ttcccctaaa aagaatcttg aagaagcggg tattacggtt taccaaaaag
     1561 atttgaatta tattaatttg acggttcaaa gaattggaaa gcaacaccac ctcaaactaa
     1621 gcgttagtga gaaaagggat cgtcaaaaaa cgaatttatc caattctgaa accattgccg
     1681 gaagcaatgt caaagcatat aagtcaaaag cactaccaaa ttataaaggg gaaatattgt
     1741 taaagatagc ttctaaaaac ggaaaatatt tatattacta ctctctagat ggtggcgctt
     1801 cttatgaaaa actagccgag acagcagaca atattttaat tggtatgatg tatacaggtg
     1861 ccaatgttgg tgtgtatgcg acttcaaacg gacaaaagac aaatgccttt gccgattttg
     1921 attgggtaag ttataagggt tttgtgaaac gctaaatgaa ttacaatgaa aaaaataacg
     1981 ctactaatgg tattgtttct gattggatgt cagaccaaca gccctacgga attaagctta
     2041 atcaatcttt ttaatgacca tatggtgttg cagcaagaca ctttggttag cttttgggga
     2101 caagcaacaa aaggagtaaa agtaagccta cacagcagtt ggggagcgca ggccactacg
     2161 gttgccgacg aaacagggaa ctggatggta caactcaata cgccaaaagc cgataacaaa
     2221 tcacatacag taactgtaaa gtccaaaaaa aacaccatta agatcgagga tgtccttatg
     2281 ggtgaagtat ggttagcctc aggacaatcc aatatggaaa tgcccatgaa aggttttagg
     2341 tacgccaaag ttcatgagtt ggttgaaggt gctgaggagg agattgccaa cgccaactat
     2401 cctgagataa gaatgtttac cgtcaaaaga actattgcat ttgagccaca ggaaaatata
     2461 gaaggcaact gggctgtatg tacgccagaa acgcttgggg agttttcggc tgtcgcctat
     2521 tatttcggaa aaaaattgta ccaagagttg aacgttccta ttggtttgat tcattccagt
     2581 tggggaggca gtcctgctga aagttgggtt aggttggatt taattgaaaa aataaaaggt
     2641 tttgaaaaca cctcaaaacg attagaaatt gcaaatgacc ctaatacacc ttacaacaaa
     2701 tgggtggcca agcacacttc agttaaatgg gatagcctga ttgaagtaga caattttaaa
     2761 tgggttgata aaacccattt ggaatttctg tctagcgatt ataatgacga cgcctggcaa
     2821 gacgcagctg ttactagtat tggagaagct ttcgagaaag atgattttaa tggaatcggt
     2881 tggattagac aacagctaaa catagatagc ctaccagaag gcgacttggt ctttgatttg
     2941 ggcgagacag atgacttgta cacgattttt attaatggtg aaatgattgg tagaaaagag
     3001 tattggggtg tcgcctccaa tcgatatacc ttcagtagcg atgtgctcaa aaaaggacaa
     3061 aataccatag ccattcgctt tattgatgtt tggggtgaag gcggtttaaa tgtagatcga
     3121 aatagaggta tttacgtcgg agacaaaaaa ataatagccc taaatgagga ttggaaatta
     3181 aatatggttt gctatctcac gggcggagat ttttatatac ttgaaagtgg tgatgaggaa
     3241 attgcacttg cttcaccaga taggatgccg catcaatcca attcacctac cacacttaat
     3301 aatggtatga ttgcgccatt ggtaccatat acattaaaag gatttatttg gtatcaaggg
     3361 gagtccaatc aaggaagggc agaagaatat aaaacccttt ttcctgctgt aattgatagc
     3421 tggcgtgctc aatggaagaa cgaagcctta cctttctatt acgttcagat tgcccctttt
     3481 gcgggctatg gattgcgtac agatgcagca gaaaggatga cctcagccga attgagagag
     3541 agtcaaatgc tcacacttgc aaaatcaaat gttggaatgg ccataacaac agatgttggc
     3601 gatgacaaat tgatacaccc gccaaagaaa aaagaagtgg gagaccgttt ggcactttgg
     3661 gcttttaaca aagattacgg ctatactgat ttggtacact ctggtccaat ctataagtct
     3721 gtgcgtttca ataagggcag ggctttggtt tcttttgacc acgctggttc ggggctctat
     3781 tgtccagata acacaattaa acattttgaa attgctggcg cggatggaaa gtattaccct
     3841 gccaaggcca gaattattgg aaaagaagta atggtttggt ccaataaagt tccgcagccg
     3901 aagggagtga gattgggatg ggaaaattat ttcgaaatta atttatttaa caaagaagga
     3961 ctgcctgcct cgtcttttag gagcatggag taatgttaaa attcgcatga tgagcatcca
     4021 aaaaatcaat ttctgttttc tgtcaatact gctcctagtg ttggccgctg cgtgtcagcg
     4081 cgaaacaaca aagcgtccca acattgtttt attgttggca gatgatttgg gtcatcacga
     4141 attaggtgct tatgggcaac aagtaatcca aacccctcac ttggacgcac ttgcggcaaa
     4201 gagtatgagg tttactgact tttatgccgg aaattccgtt tgctctccct caagggctgt
     4261 gttgctaacg ggcaaaagtt caacccgtgt tcccattcgc ggaaatgccg gattttttgg
     4321 agacgacaaa tgggaagggg tttaccttga tgctgatacc ttcacactcg gcgaaatgtt
     4381 taaggcggcc aactaccaaa ctgcctttgt tggaaagtgg caccttgacg atcccgatac
     4441 tccagctact tgggcgtttg gtcacggttt tgattttgca gcgcaagagc agtggtctgc
     4501 acgctttgga aaacgggatt tcaataagcc tggtttgtgg gtgaatgggt atcaaaacca
     4561 tattccctat gattttaaag aacacgactg caaggacgct ttttatacag atactgcatt
     4621 tgagttttta gaccaaagag agcaggacaa gccttttttt ctttttatgt cctatcgggc
     4681 acctcactct tttgaaggcc ccattcgcga tactttatcg tatgccaaaa cagattggcc
     4741 aaaggtggaa caggcacaag cagctaaagt tactttgcaa gaccagcaag taggaaggct
     4801 gttg
//
LOCUS       DPUP01000151            3156 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_18608,
            whole genome shotgun sequence.
ACCESSION   DPUP01000151 DPUP01000000
VERSION     DPUP01000151.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(469..891)
                     /locus_tag="DHV98_05440"
     CDS             complement(469..891)
                     /locus_tag="DHV98_05440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012650280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glcg protein"
                     /protein_id="HCK05800.1"
                     /translation="MTHIIKTSRLTHSGTMAMLTAAIAMAEKIGQPQCIVIVDASGEL
                     LGEVRMTGAKFLSRKSAMAKAQTAASNNAPSANVPEALRLPFGLATGGKVTGLMGGLP
                     IRLDGDMVGAIGVGSGTGDQDLEVAKAALTAIGADTLA"
     gene            complement(1150..1773)
                     /locus_tag="DHV98_05445"
     CDS             complement(1150..1773)
                     /locus_tag="DHV98_05445"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05801.1"
                     /translation="MARNAVDEGLLIGQSYSDPTHDVLNALNIDEPSDPYCCKYYAFV
                     ENIDDLFESFSLKLNEFRNIKSPNHFFIPPYQAIDYLRELSAADNLIKFEEIFEEITD
                     NKNGDEERSPPPSPDGSVHDEKSNPKSEKELNKDLNKRSEDFFTERQRQALVRERKKL
                     ILILCALVCGATLMGYFTNGISGALSLGLSAAVVSAFVIYSFNKGQS"
     assembly_gap    1784..1916
                     /estimated_length=133
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2501..2586
                     /locus_tag="DHV98_05450"
     tRNA            2501..2586
                     /locus_tag="DHV98_05450"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:2534..2536,aa:Leu,seq:taa)
BASE COUNT          786 a          590 c          657 g          990 t
ORIGIN      
        1 agctcaattc cctatatatg tgtaagttta tttttaagtg ccctgtatta gtttaagatt
       61 tatgtattat ggagcagaaa aaaatgactg tcttaaaatg catctcatct attcattatt
      121 ttcataaaga tccgcttcca gtttaagtat gtctgccgca aattatttaa aaatgtggtc
      181 gttatctatt taatccaatc gtgtgctttt tattttaaag cttaacacag ggcgtgcatt
      241 gtcgcttttt ccctttgatt ttagtggatt tcggaaattg tgaccgtgtt tcacctcacg
      301 gttttgtgaa ctgttatgca tcaataaaag tgggcgcatt ttgctcgaat cgcggatttc
      361 actgatctat atctgagctt aaaaaaaggt tttgggttgg tccactgaac caaaagcttc
      421 gcaaacgtga tgctttaaag cgtttcaatt gtacttaatt caaaactttt aagcgagggt
      481 atctgcgcca atagcggtta atgcggcttt ggcgacttct aagtcttgat cgcctgtgcc
      541 cgaacctacg ccgatagcac ccaccatgtc tccatcaaga cgaataggca gtccgcccat
      601 caagcctgtg actttgccgc ctgtagccag accaaagggc agacgaagcg cctcaggcac
      661 attggcgctt ggggcattgt ttgaggcggc agtttgggct ttggccatcg cacttttgcg
      721 gcttaggaac tttgcgccgg tcatgcgcac ttctcctaaa agctcaccac tggcatcaac
      781 gattacgata cattgcggct gtccaatttt ttctgccata gcgatggcgg ctgtcagcat
      841 ggccattgtg ccagaatggg ttaagcggct ggtttttata atatgtgtca tattattccc
      901 ctaggttatt tattttctaa tggctttcag gcggtagcac aagctggtgc aatcaatgcg
      961 cgtgagtgtt gtgacactaa tcgactaaag ggcgcggcgt cgttttagat ggaagttctc
     1021 tcacagtagc ctgcgagtat aaaaagaaag ttgtatttgg ggtagaaacg ccacccacta
     1081 catatgattt ctctggcttt acgaaactaa ttgttcagta tttcaaaatt ggcataagtg
     1141 ccagcactct tagctttggc ctttgttgaa actataaatt acaaaagcgg acacgaccgc
     1201 cgccgaaagt ccaaggctta gcgctcctga tattccattg gtgaaatagc ccataagcgt
     1261 tgctccgcaa accaatgcac ataggatcaa tattagtttt ttgcgctctc ttaccaatgc
     1321 ttggcgctgg cgctcggtaa aaaaatcttc ggacctttta ttgaggtctt tatttaattc
     1381 tttttctgat ttgggatttg atttttcatc gtgaacggac ccgtcagggc tgggtggggg
     1441 agaccgctct tcatcaccat ttttattatc tgttatttct tcaaaaatct cttcgaattt
     1501 tatcaagtta tcagctgcac ttaattcgcg cagataatct atagcctggt atggaggaat
     1561 gaaaaaatga tttgggcttt tgatgtttct aaattcgttt aattttagtg aaaaactttc
     1621 aaaaagatca tcaatatttt ctacaaaggc gtaatattta caacaatacg gatccgatgg
     1681 ttcgtcgatg tttagcgcat ttaaaacgtc gtgagtgggg tcgctatatg actgtccgat
     1741 gagtaaccct tcatctactg cgttacgcgc cattatatag atgnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnacta
     1921 tttgccgttt aaggctacat tttaaaacga agttcactgc ttctaaacac atgtaattct
     1981 accttatgtg atatgaaatt ggcttatttt gatattgaac agtgaacttt tttattcctg
     2041 tcacatttca aaaatttcat ttaacaaaaa aacaggtcac caattaagat gacctgtttt
     2101 gtctaacatt aaagccaaaa gctttgaaag ttatagtttg ccagttggcg cttctgcttg
     2161 aacagcagga gctggcgctg ttgcacagcc agcaacgata gttgtaatag ccaaaagaac
     2221 tgaaactgaa acgattttta gcatgatgat ccatcctggt taagtttagg tatgttaacc
     2281 actaaatggg tataagtttc aagtgaattc ttatttattg tgtttaattt tttaaaattt
     2341 ggatattttt aaacctaaat taattatctt attctgtttt caccttttta tgtcgattta
     2401 gtgttggtcg cctttgattt tttcagattg ttttgatatt tttgtttttg catcttgagt
     2461 gcgtcgcccg ctttgcctat gacattggta ctgccagtgt gcgggcgtga tggaatggta
     2521 gacataccag acttaaaatc tgaggggcga atgcccgtgg gggttcgagt ccccccgccc
     2581 gcaccactag gccgaaagat agtgtggcta tctcagtcca agtaattgat aaaattcact
     2641 ttagatgtct taccctagta ttgggatgga gagaatgttg accaaattgc tgaccaaaaa
     2701 actcttcttt aagtttaacc gcggcggtta ttattacttt tcaaggtgta taccagctga
     2761 cctggttcac cattatccgt gtcctaggat atttaagggt ctgcgaacaa acctgcatga
     2821 ccgccaatcg ttggaaagtt cacaattacg ccatctgagg ccttgaaagc ctatcttctt
     2881 tgaacagcgg tgccaataag ggtaagacct tttatggagc cgttgagagt gcctgcgggc
     2941 accttattaa ggcgtgtggg gccaaagact tggtggagcg taaggatggt ttgatttatt
     3001 gagattactt gattgctgaa ggaatggtcg gatctagtcg gagtggggta atttgtacga
     3061 cttgataagt gataaacttt tctatcgcgg aatatgcatc tgatttgcaa gctatttttc
     3121 tggaatgtag cgcgactagc atgttgttgt ttccag
//
LOCUS       DPUP01000152           14069 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3029,
            whole genome shotgun sequence.
ACCESSION   DPUP01000152 DPUP01000000
VERSION     DPUP01000152.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14069)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14069)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14069
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..2833
                     /gene="mfd"
                     /locus_tag="DHV98_05455"
     CDS             <1..2833
                     /gene="mfd"
                     /locus_tag="DHV98_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCK05802.1"
                     /translation="EPGEFSLRGGIVDVFSFSNDHPYRLEFFEDTLESIREFDIETQL
                     SIGLKNKISIIPDVGEKSRAVSRQSFLSYVGDQALVILQDRSFILDQIRDLFVKATQH
                     YVQLESPLQWSAPEVLFCDEQRFDQDLKAADNIWLVSKNETEQDLNFDQTPQPSFNKQ
                     FNLLIDQINLSDRQGMTTILCCGSEAQAKRFRDIFEDSTKDVKGYHIEVFSLHQGFVD
                     KAQGIACYTDHEIFERYHKFKLKNGLAKKQAVNIKELSQWQIGDYVTHIDHGIGTFGG
                     LQQIEVEGKVQEAIKLVYGDRDILYLSIHALHKIAKFNGKDGSVPKLYKLGSAAWKNL
                     KTKTKKKVKQIAFDLIELYAKRRLQKGFAFGPDSYLQHELESSFMYEDTPDQTSATND
                     IKKDMESPQPMDRLVCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHFNTF
                     SKRLEDLPVNVDYLNRFRTAKERKDVLERLKNGTLDIVIGTHQLVNSSVAFKDVGLLI
                     VDEEQKFGVSVKDKLKTLKENIDTLTLTATPIPRTLQFSLMAARDLSVISTPPPNRYP
                     IETQVVRFSETLLRDAIHYELSRGGQVFVVQNRIEHIQELAGVIQRLIPEAKIAVGHG
                     QIDGKKLESIMMGFMENEYDILVSTTIIENGLDVSNANTILINNAHHFGLSDLHQMRG
                     RVGRSNKKAFCYFITPPYSAMTDEARKRMTALEQFSELGSGIHIAMKDLEIRGAGDLL
                     GGEQSGFINEIGFETYQKILAEAIEELKEKEFKDLYKDQIAKKKVFTRDTVVDTDFEL
                     RFPEDYINSVTQRLQCYTELNELSKEEEFSVFENNLIDRFGGLPKSAKDLLECAKLKL
                     IAAELGLERVVLKNHRMIGYFIQDQESPFYQTPIFQHIIQVVQAHDQGQMKLKEKQTK
                     NGLRLLLTVEKIPTVATALSHLRVLLQNG"
     gene            complement(2821..3186)
                     /locus_tag="DHV98_05460"
     CDS             complement(2821..3186)
                     /locus_tag="DHV98_05460"
                     /inference="COORDINATES: protein motif:HMM:PF02021.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HCK05803.1"
                     /translation="MAKHNDLGQWGEQIAERFLRAKGYEILFKNYRVGRLELDLVVCQ
                     EPNELVIVEVKTRSSDLWQDPLAAVGQQKQRHLMRAGNHLLHTLNTAHAVVRFDLISI
                     VGTADDYQISHIEDAFYPF"
     gene            complement(3170..4189)
                     /locus_tag="DHV98_05465"
     CDS             complement(3170..4189)
                     /locus_tag="DHV98_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HCK05804.1"
                     /translation="MSLAEFSAPDFLVPGDLVAIIATARFVTQEDLNEAKSCLERWGF
                     RLILGQSIGVKHHQLAGSDTARAQDLQWALDHPEVKAIWCARGGYGTIRILDRVNFEG
                     FKQYPKWVIGYSDVTALHARIQKLGWASLHAQMPLALGEKTSETSRTIEQALKGINYI
                     IEWPIQVTQIYEDDGPQGSDQSINKLREQGAKSTNDQTVKTRPGEVIAPVIGGNLSLI
                     YSLQGSEEAPDTRGKILFIEDLDEYLYHIDRMIYSLKRSGVFKGLAGLIVGGMSDMKD
                     HEIPFGYDPYQIIWAAVAEESYPVVFDAPMGHLTDNRALPLGRLCTLKVTPTEAKIQV
                     HGKTQ"
     gene            4356..>5484
                     /locus_tag="DHV98_05470"
     CDS             4356..>5484
                     /locus_tag="DHV98_05470"
                     /inference="COORDINATES: protein motif:HMM:PF08811.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 domain-containing protein"
                     /protein_id="HCK05805.1"
                     /translation="MSSLELNTNATSCNSSTLDPYVPGSSNPWNKAKVKHCYRRLGYG
                     TDDITLNNGVNISPGALIDQIVDSAANAPLREDPVWGYYRLVDFNDYNTENPEFINDF
                     RIETGNLMVNDGLKGRMIFFWLNHFVTELDTYNYSPYLFQYYRTAEQHVLGNFKDLVH
                     DMGLTPAMLFYLNGFQNTNTEPNENYARELFELFTLGEGNGYTQEDIIETSKALTGWN
                     LSPQAGGQIIFNTNTFFNGDKTIFGQTGNWNYHDVIDILFQERGELIAQHICRKLYRY
                     FVSPEIDLMIEANIITPMAQTMLDNNFDLVPVLKQLFKSEHFFDEKALGVIIKSPFDL
                     IFQFVNESRFLFNDDLMEAFIYYAAILGQIMFNPPDVAGWQG"
     assembly_gap    5485..5510
                     /estimated_length=26
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5581..5868
                     /locus_tag="DHV98_05475"
     CDS             5581..5868
                     /locus_tag="DHV98_05475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05806.1"
                     /translation="MLFDSGQEERFRTLAIDLSNDSNDPAYITQVIVDHFHARELFTS
                     TDYDVATEVFKWEIPQNYYDDRLWNLSWAEAPYQVFLLLNHMATWPEFQLK"
     gene            5875..7497
                     /locus_tag="DHV98_05480"
     CDS             5875..7497
                     /locus_tag="DHV98_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation pathway signal"
                     /protein_id="HCK05807.1"
                     /translation="MAQKKNYSKERDSGRVDHKQHDHEHDYWSRRSFIQALGLVGGGS
                     ILMGNQAVSAAQATPLTVALSESQNDNILVIIRLNGGNDGLNTIVPVYDYATYANLRP
                     NIRHFEPNLMPLNDDFSLPNYMNDLESVWGDGQMKVVHGVGYPDQNLSHFRSSDIWAS
                     GAHQYEEPTGWWGRYFEDLYPDYLTNPPAAPPAIQVGNIGNLIFDGFDNNYAFTVANI
                     EQLQAIGTNGALHDVVNVPDCIYGDKLTYLRATANTTYTYSGVINEAYMAASNNANYG
                     NGDLATQLAAVARLIKGGLGTKVYMVSLGSFDTHADQRYQHQALLQDLSSSIKAFYED
                     LGAGGWDQKVLSMTISEFGRRPYENGSSGTDHGAASPMMLFGPALNGSGFVGDHPDLL
                     TWDDYDNLIPSSDFRDVYASVLANWFCLDQEVIDSILLNHNYQPLDLGLDCQTLSVGA
                     PKPFLRFTHRPVYQNNQTLIVLETQQTAHGRITLYDLMGRELVTLADRMFFPGQHRID
                     VRQAAGIRLSYGQYIYRISFAGQHYSKSIMIR"
     gene            7609..>8699
                     /gene="metG"
                     /locus_tag="DHV98_05485"
     CDS             7609..>8699
                     /gene="metG"
                     /locus_tag="DHV98_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017495890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HCK05808.1"
                     /translation="MKQTPKRYTITAALPYANGPVHLGHLAGVYIPADIYARYLRLQG
                     RDVVFICGSDEHGVPITIKAKKEGITPQAVVDRYHEIIGKSFSDFGISFDNYSRTSAP
                     IHHQTASDFFKDLYDKGKFIEETTEQLFDAEAQQFLADRFVVGTCPKCGNTESYGDQC
                     EQCGTSHNATDLIRPKSTLSGSTPVRKQTKHWFLPLDEHEAWLKEWILNQHKSDWKPN
                     VYGQCKSWIDDGLRPRAVTRDLDWGIPVPVDKAEGKVLYVWFDAPIGYISATKEWAQN
                     NGVDWTPYWQDKETKLVHFIGKDNIVFHCIIFPSMLKAHGDYILPDNVPANEFLNLEG
                     DKISTSRNWAVWLHEYLLDFPEQQDVLRYA"
     assembly_gap    8700..8803
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <8804..9799
                     /gene="metG"
                     /locus_tag="DHV98_05490"
     CDS             <8804..9799
                     /gene="metG"
                     /locus_tag="DHV98_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase subunit beta"
                     /protein_id="HCK05809.1"
                     /translation="QDVLRYALTANAPETKDNDFTWADFQARNNNELVAIFGNFINRV
                     TVLTHKYYHGEIPTPNELLEEDQLILDQLQAYPKVIGDSIERYRFREAQSELINVARM
                     GNKYLADAEPWKLIKSDPERTATILYIALQIAAALAVLSEPFLPFTSKKLKQSLGLDP
                     LANPLNWAQIAESSTYLPKGHLIAQSPLLFRKIEDEEIELQRQKLAQTKMNNQPMDDN
                     HTPQKELVNFDDFTKMDLRVGTILSAEKMPKANKLLVLKVDVGVDQRTIVSGIAEHFS
                     PEEIIGKQVCVLLNLAPRAIRGTESQGMILMAEDADGALRFVAPEQAIKAGSTIR"
     gene            complement(9863..10093)
                     /locus_tag="DHV98_05495"
     CDS             complement(9863..10093)
                     /locus_tag="DHV98_05495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002680813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HCK05810.1"
                     /translation="MVIITLQRQKCIGCNYCVELAPEQFQMSKKDGKSVLLHAQDKKG
                     FHTLKTPDASAYQPSTEAAKACPVNIITTKLV"
     gene            complement(10104..11360)
                     /locus_tag="DHV98_05500"
     CDS             complement(10104..11360)
                     /locus_tag="DHV98_05500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018280402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagenase-like protease"
                     /protein_id="HCK05811.1"
                     /translation="MTEHGTIELMAPAGNFESLQAAIENGADSVYFGVDQLNMRARAS
                     INFTIEDLPEIVARCAAKKVRTYLTLNTIIYDHDLSIIKTLLDAAKSAGITAVIVMDQ
                     AVIAYARQIGMEIHISTQINITNIETVKFYAMFADTMVMSRELSLRQVKKIVEQIERD
                     DVRGPSGRLVEVEIFGHGALCMAVSGKCYLSLHSHNSSANRGACKQNCRKKYTVIDQE
                     SGFEIELDNEYMMSPKDLCTLDFLDQVIDTGVKVLKIEGRGRAPEYVAKVIRTYREAI
                     DAHAAGTFNKERVAQWMTELEKVYNRGFWSGYYLGQKLGEWSEANGSKATQKKVYVGK
                     GVHFFPKSNIGEFKIEAYDLKLGDTLLIQGPTTGTQELELSEMLVNDQAQETASKGDS
                     ITLPLPFRIRPSDKLYKVVKTEYATT"
     gene            complement(11454..11780)
                     /locus_tag="DHV98_05505"
     CDS             complement(11454..11780)
                     /locus_tag="DHV98_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013305556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HCK05812.1"
                     /translation="MSTLRNKVQLIGNLGNDPEIVTVASGRKLAKFSMATNESYKNNK
                     GERMTDTQWHHVIAWGKTAELIELYLGKGKEVALEGKLVTRFWDDQEGQRRYATEVHC
                     HTLLML"
     gene            11997..13910
                     /gene="acs"
                     /locus_tag="DHV98_05510"
     CDS             11997..13910
                     /gene="acs"
                     /locus_tag="DHV98_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018944443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HCK05813.1"
                     /translation="MNHYHLDTAESYKRAYQESLENPEEFWAGIAKDNFLWQKPWDKT
                     FEWDQKNTQVKWFLGGKLNITENLLDRHLAHNGDKTAIIFEPNEQDESPQKISYSDLA
                     KSVNKMANVLKDQGVTHGDRVCIYLPMIPELAIAVLACARIGAIHSVVFAGFSSTALA
                     ARINDCDCALVITSDGGFRGAKTIALKNIVDQALEECPGIQKTLVVARTNQKINMVPG
                     RDLWLKPLVDQASDHCPATMMDAEDPLFILYTSGSTGKPKGMVHTCGGYMVYTAYTFK
                     NVFQYTEQDIYWCSADIGWITGHSYILYGPLANGATTVMFEGVPSYPDFGRFWAIIEK
                     YKITQFYTAPTAIRALAKESLDFVTPYDLSSLKVLGTVGEPINEEAWQWYFNHIGQAK
                     VPIVDTWWQTETGGVMIAPLPGITRAIPTYATLPLPGIQPVLLDEQGNEINTQEGSGL
                     LFIKHPWPSIARTIWGDHQRYVQTYFGAQKDKYMTGDGATRDAQGNYRITGRVDDVII
                     VSGHNLGTAPIEDAINEHELVAESAVIGVPHPIKGNSLFGFIILKQKQSSETEASLKN
                     QINQSITQHIGPIAKLDEMVFTPGLPKTRSGKIMRRILRNIAQRQFDALGDTSTLLNP
                     EIVKDLIKMMKKI"
BASE COUNT         3931 a         3231 c         2972 g         3805 t
ORIGIN      
        1 cgaacccggt gaattctcgc tgcggggtgg aattgttgat gtcttttcat ttagcaatga
       61 ccatccttac cgtcttgaat tttttgagga cacccttgaa agtatccgag aatttgacat
      121 tgagacccaa ctctccatag ggctcaaaaa caaaatctcc atcattcctg atgttggaga
      181 aaaatcgcgc gcagtctcgc ggcagagttt tctctcatat gttggggacc aagcgctcgt
      241 tattcttcaa gatcgctcct tcatcctcga tcaaattcgg gatctttttg tcaaggcgac
      301 acaacattat gtccaattgg agagtccact ccagtggtcc gctccagagg tgcttttttg
      361 cgatgaacaa cgctttgatc aggatctcaa agcggcagac aacatctggc tggtctcaaa
      421 aaacgaaacc gagcaagacc tcaactttga tcagacccct caaccgtcct tcaataaaca
      481 atttaatctg cttatcgatc aaattaattt gagtgatcgc caaggaatga ccaccattct
      541 ttgttgtggc tcagaggccc aagccaagcg ctttagagat atttttgaag acagtaccaa
      601 agatgtcaaa ggctatcata tcgaggtgtt ttctttacat caggggtttg tcgataaggc
      661 ccaaggaatc gcttgttata cggatcatga aatttttgag cgctaccata aattcaaatt
      721 gaaaaatggt ttagccaaaa aacaagccgt caacataaag gagctctccc aatggcaaat
      781 tggagattat gtcacccaca ttgaccacgg tattgggact tttggtggct tgcaacaaat
      841 tgaagtcgaa ggaaaagtcc aagaagccat taaactcgtc tacggggatc gcgacatcct
      901 ttatttgagc atacacgcct tgcacaaaat cgccaaattc aacggcaaag atggttcggt
      961 tccaaaactc tacaaacttg ggagtgccgc atggaaaaat ctcaaaacta aaaccaagaa
     1021 aaaggtcaag caaattgcct ttgaccttat tgaactctac gccaaaaggc gcttacaaaa
     1081 gggctttgcc tttggtccag attcctatct acagcatgaa cttgagtcct catttatgta
     1141 tgaagatact ccagaccaaa catcggccac caatgacata aaaaaggata tggaaagtcc
     1201 acaacctatg gatcgtctgg tttgtggtga tgtgggcttt ggaaagactg aggtcgctat
     1261 tcgcgccgcg tttaaggcgg tggacaatgg caaacaagtt gctgtcctgg tgcccacaac
     1321 aattctcgcg ttccaacatt ttaatacatt ttcaaaacgc ttagaagacc tgccggtcaa
     1381 tgtggattat ttgaatcgtt ttcgcacggc aaaagaacgc aaagacgtct tggagcgtct
     1441 caaaaatggg acgctggaca tcgttatcgg cacgcatcaa ttggtcaatt catcagtagc
     1501 gtttaaagat gttgggctcc taattgtcga cgaagaacaa aaatttggcg tttcggttaa
     1561 ggataaactc aaaaccctca aagaaaacat tgacacccta accctcacgg ccacaccgat
     1621 accccgaacc ttgcaattca gcctgatggc cgcaagggat ctttcggtaa tcagcacccc
     1681 gccgccaaac cgctacccga ttgaaaccca agtggtccgc tttagcgaaa cccttctgcg
     1741 cgacgccatt cattacgaac tctctcgcgg gggacaggtc tttgtggtcc aaaaccgtat
     1801 tgaacacata caggagttag ccggtgttat tcaaaggctc attcctgaag cgaaaatcgc
     1861 ggtgggacac gggcaaatag acggcaaaaa actcgaatca atcatgatgg gctttatgga
     1921 aaacgagtac gacattttgg tctcgaccac catcattgaa aacggactgg acgtatccaa
     1981 tgccaatacc atcctgatta ataatgccca ccactttgga ctttccgacc tgcatcaaat
     2041 gcgcggacgt gtcggacgaa gcaacaaaaa ggccttttgc tattttatca ccccgcctta
     2101 ttctgccatg accgatgaag cgcgcaaacg catgacggcc ctagaacaat ttagcgaatt
     2161 gggcagtggt attcacatcg ctatgaagga tctcgaaatc cgaggcgctg gagatctttt
     2221 aggcggagaa caaagcggct ttatcaatga aataggcttt gaaacctatc agaaaatatt
     2281 ggctgaagcc atagaagaac tcaaagaaaa ggaatttaag gacttataca aggatcagat
     2341 cgccaagaaa aaagtcttta cccgggacac ggtggtggat accgactttg agctccgctt
     2401 tcctgaagat tacatcaaca gtgtgaccca aagacttcaa tgctataccg agctcaacga
     2461 attgagcaaa gaagaagagt ttagcgtttt tgaaaacaac ctcatcgatc ggtttggagg
     2521 actccctaag tcggcaaaag accttttgga atgtgccaaa ctcaaactca tcgctgcaga
     2581 attaggcctt gagcgcgtgg ttttaaaaaa tcaccgcatg attggatact ttattcaaga
     2641 tcaagagagc ccgttttatc aaaccccaat ttttcagcat atcatccagg tggtccaggc
     2701 tcatgaccaa ggacaaatga agctcaaaga aaagcagacg aaaaatggat tgcgtttgct
     2761 tttgaccgtc gaaaaaatac ctactgtcgc caccgcctta agccatctcc gcgtgctgct
     2821 tcagaacgga taaaacgcat cttcgatatg gctaatctga taatcgtcag ccgtcccgac
     2881 aatggaaatt aaatcaaagc gaaccacggc atgagctgta ttcagtgtat gcaataagtg
     2941 atttcccgct cgcatcagat gcctttgttt ttgttggccc acagcggcca aaggatcctg
     3001 ccaaaggtcg gacgacctgg tttttacttc aacaattacg agctcattag gttcttgaca
     3061 cacgaccaaa tccaactcta atcgcccaac tctgtaattt ttaaagagaa tttcataccc
     3121 cttggcccgc agaaaacgtt ctgcaatctg ttcgccccat tggcctaggt cattgtgttt
     3181 tgccatgaac ctgtattttg gcctcggttg gggtgacctt caaggtacag aggcgtccaa
     3241 ggggcaacgc cctattgtcg gtgaggtgac ccatgggtgc gtcaaagacc acggggtaag
     3301 actcctcagc cactgcagcc caaataatct ggtaggggtc atatccaaaa ggtatttcat
     3361 ggtctttcat atcactcatt ccccctacaa tcagtccagc caaaccttta aacactccac
     3421 tgcgctttaa ggaatagatc atgcgatcga tatggtagag atactcatct agatcttcga
     3481 tgaaaaggat tttgccacgg gtatctgggg cctcctcact gccctgtaga ctgtagatta
     3541 aggacaggtt gcctccaatc actggggcga taacttcacc ggggcgcgtc ttcacagtct
     3601 gatcgtttgt ggattttgcg ccttgctccc tgagtttatt tatactttga tcactgccct
     3661 gggggccatc atcctcataa atctgtgtga cctgaatggg ccattcgatg atataattta
     3721 ttccctttaa agcctgctcg atagtccgag aggtttccga agttttttct cccagtgcca
     3781 ggggcatttg ggcgtgcaaa ctcgcccagc ctaatttctg aattcgtgca tgaagggccg
     3841 tcacatcaga ataaccaatg acccatttcg ggtattgttt gaacccctca aaattgacac
     3901 gatccaaaat cctaatggtg ccataacccc cgcgcgcgca ccagatcgct tttacctcgg
     3961 gatggtctaa agcccattgc aagtcctggg cgcgcgcggt gtccgatcct gcaagttgat
     4021 gatgttttac cccgatactt tgacctaaaa tcagcctaaa accccatcgc tcaagacaag
     4081 atttggcctc attcaaatcc tcttgagtca caaagcgagc cgtggcaatg attgccacca
     4141 aatctccagg caccaaaaaa tcgggggcgg aaaattcagc cagtgacatt ccagactcag
     4201 aacatttagg gtcattaaat ttagaggttg tgtcggaaaa ctccatttta tgaactaatt
     4261 attgaagtaa aaataatttg tgggaagaat tataaagtta aacatttctc accaagtgct
     4321 gtcgaataaa taataattca taaattggtt tgtaaatgag ctcattagaa ctgaacacta
     4381 acgccacctc ctgtaattcc agtaccctcg acccttatgt tcctggaagt agtaacccgt
     4441 ggaataaggc caaagtaaaa cactgctatc gtcgtttggg ttatggaacc gatgacatca
     4501 ctttaaataa tggggtgaat atcagtcccg gggcgctcat cgatcagatt gtagacagtg
     4561 ccgccaatgc accactgcgt gaggaccctg tttggggcta ttacagactg gtcgatttta
     4621 atgactacaa taccgagaat cctgagttta tcaatgactt taggatagag accggaaatc
     4681 ttatggtcaa tgatggcctt aaaggccgga tgattttttt ttggttgaat cattttgtga
     4741 ccgagcttga cacctacaat tattccccgt atttatttca atattatcgt actgcagagc
     4801 agcatgtctt gggcaacttc aaggacctgg ttcatgatat gggacttacc ccagccatgc
     4861 ttttttatct caatggtttc caaaacacca atacggaacc caacgagaat tacgctcgtg
     4921 aactttttga actctttact ttaggggaag gcaatggcta tactcaagag gacatcattg
     4981 aaacctcaaa agcgcttacc ggctggaacc tgagtccaca agctggaggt caaatcatct
     5041 ttaataccaa tacctttttt aatggggata aaactatttt cggacaaacc ggaaactgga
     5101 actaccacga tgtaatcgat atattatttc aagagcgggg tgaacttatt gcccaacata
     5161 tttgtcgcaa attatatcga tactttgtga gtccagagat cgatttaatg attgaagcca
     5221 atattatcac cccgatggcg caaaccatgc ttgataataa tttcgattta gtccctgtgc
     5281 taaagcaatt gttcaaaagc gagcattttt ttgatgaaaa agcacttgga gtcattataa
     5341 aaagtccctt tgatctgatt tttcaatttg tcaacgagtc gcgttttttg ttcaatgacg
     5401 acttgatgga agcctttatt tattatgcag cgattttagg acaaatcatg ttcaaccctc
     5461 ctgatgtggc gggctggcaa ggcgnnnnnn nnnnnnnnnn nnnnnnnnnn aggcgatcaa
     5521 gactggattg gcacctcaac cattacgggc cgatgggctt tatttcgggc ctatttgaat
     5581 ttgctatttg acagcggaca agaagaacgt tttagaaccc tggccataga cttatccaat
     5641 gatagcaatg atcctgcgta tatcactcaa gtgatcgtgg atcattttca cgctcgggaa
     5701 ctctttactt ccactgatta tgatgtggct actgaagtct ttaaatggga aattccacaa
     5761 aattattatg acgatcgact atggaatcta agttgggcag aggcccccta ccaagttttt
     5821 ctcttattaa accatatggc cacttggcct gaatttcaac tcaaatagac ggccatggct
     5881 cagaaaaaaa attattctaa agagagggat tccgggcgtg tagatcataa gcagcatgac
     5941 catgagcatg attattggtc gcgccgcagc tttattcagg ctctaggtct tgtcggcggc
     6001 ggaagtatcc ttatgggtaa tcaagccgtt tctgcagctc aagcaacgcc gttaaccgta
     6061 gccttatctg aaagtcaaaa cgacaacata ttggtcatca ttcgcctcaa tggtggaaat
     6121 gatggcctca acaccatagt gccggtttat gattacgcca cttatgcgaa tcttcggccg
     6181 aatattagac attttgagcc caatttaatg ccgctcaatg acgacttcag cttgccaaat
     6241 tatatgaacg acctagaatc ggtatggggc gatggacaaa tgaaagtagt gcacggtgta
     6301 ggctaccccg atcaaaatct ctcgcatttt cgctccagtg atatttgggc ctctggggcc
     6361 catcaatacg aagagccaac gggttggtgg ggccgctact tcgaagatct ctatccagac
     6421 tatttaacca acccgcccgc ggcaccaccg gcgatccaag tgggcaatat tggtaatttg
     6481 atttttgacg gtttcgacaa taattacgcc ttcactgttg ccaatattga gcaacttcaa
     6541 gccataggca ccaatggagc gttacacgat gtggttaatg ttcctgattg tatttatgga
     6601 gataagctta cctatttgag ggccacggcc aacacaacct acacctattc tggggtcatt
     6661 aatgaggcct atatggccgc aagcaacaac gccaattacg gcaacggcga tttagcaaca
     6721 cagcttgctg cagtagctcg tctgatcaaa ggagggctgg gtacaaaggt ctacatggtt
     6781 tcgctcggca gttttgacac acatgcggat cagcggtatc agcaccaagc gctgcttcaa
     6841 gacttatcca gctcgatcaa agcgttttat gaggatttgg gcgctggtgg atgggaccaa
     6901 aaagtcctct ccatgacgat ttcagagttt ggtcgtcggc cttacgaaaa tggttcttct
     6961 ggaacagatc acggggccgc ctcgcctatg atgctttttg gccctgcttt aaacggaagt
     7021 ggattcgttg gagatcaccc tgatttgttg acttgggatg attatgacaa cctaatccct
     7081 tcttcggact tccgggacgt ttatgcgtca gtcttggcca actggttttg tcttgatcaa
     7141 gaggttatag actctatact gctcaatcac aactatcagc cccttgattt aggcctcgat
     7201 tgtcaaacgc tcagcgtggg tgctcctaaa ccctttcttc ggtttaccca tcgtcctgtt
     7261 tatcagaaca atcaaacttt aatcgtttta gaaacccagc aaacggccca cggaagaatt
     7321 accctttatg atcttatggg gcgggagctc gtcaccctgg ctgaccgtat gttctttcct
     7381 ggacaacacc gcattgatgt gcgtcaagcc gcaggaattc gtttgagtta tgggcagtat
     7441 atttatcgga ttagttttgc cgggcaacat tacagcaaat ccataatgat tcgataggcc
     7501 ctgaatactt taaatcctcg gtgagcaaga agcccagagt caatctcaac ggctcattac
     7561 gtggaatctt cgggttaaat ccttactttt atggcctaaa tttttgtcgt gaagcagacc
     7621 ccgaaacgtt atactattac tgcagcctta ccttatgcaa acggccctgt tcatctaggt
     7681 catttagctg gtgtctatat tcctgccgat atctacgcac gctacttacg tcttcaagga
     7741 cgtgacgtgg tttttatctg tggaagcgat gaacacggcg tgcccatcac gataaaagca
     7801 aaaaaagaag ggatcacccc gcaagcagtg gtcgatcgct atcacgagat catcgggaaa
     7861 agtttttcag attttggcat tagctttgac aattattcta gaacctcagc cccaatccac
     7921 catcaaacgg cttctgactt ttttaaagat ctttatgaca aaggaaaatt tattgaagaa
     7981 actacagagc aactctttga cgcagaagcc cagcaatttc tggccgaccg atttgttgtt
     8041 ggtacttgtc caaaatgcgg caataccgaa agctatggag atcagtgtga acaatgtggt
     8101 accagtcata acgcgacaga ccttatccgc ccaaaaagta ccctgtccgg gagtacgcct
     8161 gtacgcaaac aaaccaagca ctggttttta cctttagatg agcatgaagc ttggcttaaa
     8221 gaatggattc tcaatcagca taaatccgac tggaaaccca atgtttatgg tcagtgcaaa
     8281 tcctggatcg acgatggatt acgcccaaga gcggtgactc gcgatttaga ctggggcatt
     8341 cccgtccctg tcgataaggc cgagggcaaa gtactctatg tttggttcga tgcgccaatt
     8401 ggatatatat cagcgaccaa agaatgggcg caaaacaatg gggtagactg gaccccctac
     8461 tggcaggata aagaaaccaa attggttcat tttattggca aagacaatat cgtttttcat
     8521 tgcatcattt tcccgagtat gctcaaggca cacggagatt atattcttcc cgataacgtt
     8581 ccggccaatg aatttttaaa tcttgaggga gacaaaatat ctacgagtcg caattgggcg
     8641 gtatggttac acgaatacct tttggatttt ccagagcagc aagatgtcct gcgctatgcn
     8701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncaagatg tcctgcgcta
     8821 tgctttgacc gccaatgctc ctgagaccaa agacaatgac tttacttggg ctgattttca
     8881 agccagaaac aacaacgaat tggtcgccat ctttgggaat tttatcaatc gtgttacggt
     8941 tttgacccat aaatattacc acggtgaaat cccaaccccg aatgaactcc ttgaagaaga
     9001 tcaattgatt ttagatcagc tacaggccta tccaaaagtc attggagaca gtatcgaacg
     9061 ctatcgtttt cgtgaagccc aatctgaatt gattaatgtg gcccgaatgg gtaataaata
     9121 tcttgccgat gcagagcctt ggaagcttat caaaagtgat ccagaacgca ccgcaaccat
     9181 tctatacata gcgcttcaaa tcgcggcggc tctcgcggtt cttagtgaac cgtttctgcc
     9241 ctttacctcg aaaaaattga agcaatcctt aggactagac cccttagcaa atccattgaa
     9301 ttgggcacaa atcgctgagt cttcaactta tctgccaaag ggccatctta ttgcacaaag
     9361 ccctctttta tttcgcaaaa ttgaagatga agaaatcgag ttacagcgcc aaaaattagc
     9421 ccaaaccaaa atgaacaatc aacccatgga cgataaccac accccgcaaa aagagcttgt
     9481 aaattttgat gatttcacta aaatggatct gcgtgttgga accatcttga gtgcagagaa
     9541 aatgccaaaa gccaataaac ttttagtctt aaaagtagat gtcggtgtgg atcagcgtac
     9601 tatagtctca ggtattgctg agcatttcag cccggaagaa atcattggca aacaagtttg
     9661 cgtcctgctc aatctagcgc caagagcaat tcggggaaca gaaagccaag ggatgatttt
     9721 aatggctgaa gatgcggatg gtgcattgcg ctttgtggct cctgaacaag ccattaaggc
     9781 cggatcaaca atccgataac ctcaaccacg ccctcaagtt ccgattaatc gagttccgat
     9841 taatttttag aatgcttatt tgctaaacga gttttgtggt aatgatattt accggacagg
     9901 cctttgctgc ctcagtactg ggctggtaag ccgaggcatc tggtgttttt aacgtgtgaa
     9961 atcctttttt atcttgagcg tgcaagagca cgcttttccc gtctttttta gacatttgga
    10021 attgttccgg tgccagttca acacaataat tacagccgat acatttctgt cgttggaggg
    10081 tgattattac catgacatca acgttatgtg gtcgcgtatt cggtcttgac gactttgtat
    10141 aatttgtctg aaggacgaat gcggaacggc aaaggcaagg tgatgctatc ccctttagaa
    10201 gctgtttctt gggcctgatc attgaccaac atttctgaga gctcgagttc ttgtgttccg
    10261 gttgtcggtc cctgaattaa taaggtatct cctagtttaa gatcgtatgc ctcaatttta
    10321 aattcaccga tgttcgattt ggggaaaaag tgaacccctt tcccgacata aacctttttc
    10381 tgtgtcgctt tagagccatt ggcttcactc cactcaccga gtttttgacc taaataatac
    10441 ccgctccaaa acccgcgatt gtatactttt tcgagttcag tcatccactg agccacgcgc
    10501 tctttgttaa aggttcctgc ggcatgggca tcaatagcct cgcgataagt cctaatgacc
    10561 ttagcgacat attctggcgc gcgaccacga ccttcaatct tcagcacctt tactccagtg
    10621 tcgatcactt gatccaaaaa gtccagggta caaagatcct ttggagacat catatattcg
    10681 ttgtccaatt caatttcaaa accactctct tggtcaatga ccgtatattt ctttctgcag
    10741 ttttgtttac aagccccgcg attggctgat gagttgtgtg aatgtaaact caaataacac
    10801 tttcctgaaa ccgccataca aagtgcccca tgaccaaaaa tctctacctc aaccaatctt
    10861 ccacttggcc cgcgcacatc atcacgctca atttgctcaa ctattttttt gacctgacga
    10921 agactaagct cgcgactcat caccatggta tcggcgaaca tggcataaaa cttaaccgtc
    10981 tcaatattag tgatattgat ttgggttgat atgtggattt ccatgccgat ttgccgcgca
    11041 taggcgatca ccgcctggtc catgacaatt accgccgtaa tcccagcgct ttttgctgcg
    11101 tccaataggg tcttgatgat ggataaatca tgatcgtaaa tgatggtatt caaagtcaaa
    11161 taggtgcgta ccttcttcgc tgcacagcgc gctacaattt ctggtaaatc ctcaatagta
    11221 aaattaatgc tcgcacgcgc acgcatgtta agttgatcca ctccaaaata aactgaatcc
    11281 gctccattct caattgctgc ctgcagcgat tcaaaattcc ctgcaggggc catcaattct
    11341 atagtcccat gttctgtcat agccttaacc ttattttcgg caaaggtagt aattgcctga
    11401 aattaataag ataaaaatct gggcggctgt cgccgcccag attactgtca aggttacaac
    11461 atgagcaaag tgtggcaatg cacctctgtg gcataacgtc tttgaccttc ttgatcatcc
    11521 caaaatcggg taacgagttt gccttccaga gcaacttctt tgcctttgcc caaataaagc
    11581 tctattagtt cggcggtttt tccccaagca atcacatggt gccactgagt gtccgtcatg
    11641 cgctcccctt tattgttctt gtaactctca ttggttgcca tagaaaactt cgcgagtttt
    11701 cggccagagg ctacggttac aatttctggg tcattgccca aatttccgat caactgtact
    11761 ttgtttctta acgtactcat aattctaatt tttaaatatt aaacagttaa taatgcctgc
    11821 caatagacag attgaccttg caaacatcgt tgagtaaatt cataactcta tccctttaaa
    11881 cgtttaattt cgaggcaggt tgattgaatt tataaattca tagacgggca ttttttgtat
    11941 cttcaaaggc gctatatacg gatcacaacg gcggagaatt aactatttct gatattatga
    12001 atcattatca tttagacact gcagaatcat acaaacgggc ctatcaagaa agtttagaga
    12061 atcccgaaga gttttgggct ggcattgcca aagacaactt tttatggcaa aaaccctggg
    12121 acaaaacttt tgaatgggat caaaaaaata cgcaggttaa atggttttta ggcggcaagc
    12181 tcaatatcac agaaaactta ctcgatcgtc atttagccca caacggtgat aaaacagcca
    12241 taatctttga gcccaatgaa caagacgaaa gccctcaaaa aataagttat tccgatctgg
    12301 ccaagtccgt caacaagatg gctaatgttc tcaaagacca aggggttacc catggggatc
    12361 gcgtctgtat ttatctcccc atgattcctg aattggccat agctgttctg gcttgtgctc
    12421 gcattggcgc aatacattcg gtcgtgtttg caggcttctc atcaactgca cttgcagcaa
    12481 gaattaatga ctgtgattgt gcgttggtca taaccagcga cggtggattt cgcggggcta
    12541 aaaccatagc cctaaaaaac atagtcgatc aggcacttga ggagtgccca gggattcaaa
    12601 aaactttagt tgtcgcacgc accaatcaaa aaataaatat ggtccctggt cgggatcttt
    12661 ggttaaagcc tcttgttgac caggcgagtg atcattgtcc tgccaccatg atggatgcag
    12721 aagacccttt gtttatactt tatacctcgg gttctacggg aaaacctaaa ggcatggtac
    12781 acacttgtgg aggctatatg gtctacacgg cctatacctt taaaaatgta tttcaataca
    12841 ccgagcaaga tatctactgg tgttcggccg atattgggtg gattaccgga cacagttata
    12901 tcctttatgg tcctttggcc aatggtgcta cgactgtgat gtttgaaggc gtgccttctt
    12961 atccagactt cggtcgcttt tgggccatta ttgaaaaata taagattaca caattttata
    13021 ctgcacctac cgccattagg gcattagcca aagaatcatt ggattttgta accccatatg
    13081 atttatcaag cttaaaagtt ttagggactg tgggagaacc gataaatgag gaggcatggc
    13141 aatggtattt taatcatatt ggtcaggcca aagtccccat tgtagacact tggtggcaaa
    13201 cggaaacagg gggggtaatg attgcgccgc tcccaggaat cacccgagct attccaactt
    13261 atgctaccct gcctttgcct ggcattcaac ctgttttgct ggacgagcag ggtaacgaaa
    13321 tcaataccca agaaggctca ggacttcttt ttatcaaaca tccttggccc tcaatagccc
    13381 ggaccatatg gggtgatcac caacgatatg tacagactta ttttggcgct caaaaggata
    13441 aatacatgac cggtgatggc gctacacggg atgcccaagg caattaccgt attactggac
    13501 gcgtcgatga cgtcatcatt gtttctgggc acaatctcgg cacagcccct atagaagatg
    13561 ccataaatga gcacgaatta gtcgccgaaa gcgcggttat cggagtgcca caccccatta
    13621 aaggcaacag tctttttggt tttattattc tcaaacaaaa acaaagctct gaaactgaag
    13681 cgtccttaaa aaatcaaatt aatcaatcca ttacccagca tattggacca atcgcaaaac
    13741 ttgatgaaat ggtttttacc ccggggctcc ctaaaacccg cagtggcaag atcatgcgaa
    13801 gaattttgcg caacattgct caaaggcaat ttgacgctct aggcgacacc agcaccctac
    13861 ttaatccaga aattgtcaag gacttaatta aaatgatgaa aaaaatatag cccaagggat
    13921 ttaaggtatg gtttttgtga ccgcgtaact cgtgctaatt caaccttaat cacaaagatt
    13981 atacaatgcg tcaagtcctt tttaccctga gccttttttg cttttatttc gcaatggctc
    14041 agccaataaa ctataatgat gatcccgct
//
LOCUS       DPUP01000153            5144 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9407,
            whole genome shotgun sequence.
ACCESSION   DPUP01000153 DPUP01000000
VERSION     DPUP01000153.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5144)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5144)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5144
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            397..669
                     /locus_tag="DHV98_05515"
     CDS             397..669
                     /locus_tag="DHV98_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05814.1"
                     /translation="MELFSLVGNLAACLTTISFLPQAIKTIKSRDTQQLSLPMYLMFV
                     AGVALWIVYGLHVKSTPIIVGNVITFMLAGSILMVKIKSTFGSRRG"
     gene            735..1355
                     /locus_tag="DHV98_05520"
     CDS             735..1355
                     /locus_tag="DHV98_05520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05815.1"
                     /translation="MRTLFTSLLLLFLFVNPLKAQERPIEIEDELNNNRLNLYAVNKN
                     LQDFDVILYVNGTGFRQRAGKPRAVRVPARSRVEVSSLIIERGQEPKYTYTIEVHEEL
                     SRRSLVRAAELIKIQPKWPLTIYKPTLCSANCDPLISALDESPYLYTLTEIDAYPKVR
                     EQLKKLIVGGEERLNEMDTPIVMMAGKMYLTLTTYEEVMSTMEELE"
     gene            complement(1377..2045)
                     /locus_tag="DHV98_05525"
     CDS             complement(1377..2045)
                     /locus_tag="DHV98_05525"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05816.1"
                     /translation="MGHLSGIRTQLTIGLISMICGVSFGQIDGSTSNASGENPFFRPT
                     PTSLVPENKPPISLTIPFKDRDPKMQFPPPSQETKQLDMTASDGLLDHIPGKAPKAFQ
                     KDKEPRPEFARDQDLGDVTTSGDFVQIKYRDHEYVDGDLIRVYVNGDVVQSSVFLGAS
                     FSGFTLSLQPGANRIEFEAINQGSSGPNTAELHVYNEKGLIISAKEWNLLTGYKASVL
                     VIKD"
     gene            complement(2161..2895)
                     /locus_tag="DHV98_05530"
     CDS             complement(2161..2895)
                     /locus_tag="DHV98_05530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HCK05817.1"
                     /translation="MIHLKEKKAFITGGTKGIGFGIAQSLLQEGISVVITGRTEESVQ
                     KATSELTSLAKSNNARVLGIVADVRDYEQMESAAKNALENMGSIDLVIANAGLGHFAP
                     VHQLSVEQWHETINTNLNGVFYTLKVFAQSLMEHQGYFISISSLAGTNFFAGGSAYNA
                     SKFGVTGFTQAAMLDLRDYGVKMTTIMPGSVATYFNDHVPNDDDYWKIQKEDLGQIVI
                     QLISMHPRSLPSKIELRPTMPGGTRK"
     gene            2980..>3216
                     /locus_tag="DHV98_05535"
     CDS             2980..>3216
                     /locus_tag="DHV98_05535"
                     /inference="COORDINATES: protein motif:HMM:PF12823.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05818.1"
                     /translation="MNQNRLFFWVSRFEGISFLLLLGVAMPLKYIWHWPMGVEVIGMA
                     HGLLFVAYEVLALGLKSIKGWTFKQWLIIAFCALL"
     assembly_gap    3217..3368
                     /estimated_length=152
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3412..4680
                     /locus_tag="DHV98_05540"
     CDS             3412..4680
                     /locus_tag="DHV98_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HCK05819.1"
                     /translation="MTTSELLFITEWIRDYLYSHGFPLFWANLINAIVVIAIGLLIIR
                     LLDRVTRSVIVQLFKAFSNKTKTSFDDYLVESNFPRFVAHLSPLAVLWHFIPIGLYDY
                     PEMAQLATKVTSMYFVVLCVLIVRSILRTTKTYLKAGYEQYKDKPLESYMQVLMMFTW
                     GTGIFFIINLMTGFSVESLASLGAASAMILLIFKDTILGFVASIQVSINDMVRIGDWI
                     TFSKYGADGTVIEINLASVRVQNFDNTFTTIPTYSLISDSFQNWRGMQESGGRRIKRS
                     LMIKQNSVRFLTPEDVIAFKHIGLIKPYIEHREKDITKYNLQNQADKSLLINGRNQTN
                     LGVFRKYIDAYLHENPAINKDLFLMVRHLAPTDHGIPIEVYAFSNDKRWENYEHIQAD
                     IFDHLIASVSYFDLELYEAPSSGDVQSLKV"
     gene            4684..5079
                     /locus_tag="DHV98_05545"
     CDS             4684..5079
                     /locus_tag="DHV98_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase"
                     /protein_id="HCK05820.1"
                     /translation="MNTRDAQLIALRPELPQVSIHDQMSDQEFFQNKTLRPILKLQND
                     LLLALFRHYIEKHKGVFYEISPQRKMDYIESAIHKDMKFRNILKGLILGQFTLEEYQI
                     YTLDSSAINKRILAMIKERLKSQVQLLNP"
BASE COUNT         1394 a         1032 c          988 g         1578 t
ORIGIN      
        1 gtaatgcgtc aatagctaaa gccaccacag acaccaatga ggccatgagg gcgataaatt
       61 ctatagaacc tttttgagtt ttagccatgc tatgcaaatg tagtggatta atgacagagc
      121 aggaggataa tcaactagag gatatttgat aaattctatt tgacataata tatattataa
      181 cacaaaaggg ctcgtgtatc aagtggctga aatttcgatt gcatcagtat ctctagaccg
      241 tttcactaat aatgacagaa tgatttaaaa taatggttta ttatcctcta gataatacat
      301 tcatcattat ctgtgttaat taaacatata attcggctaa ttcacaataa tcaattggct
      361 tcagctcaaa ctatatttgc gccatatttt tatgctatgg aactattttc tttggtcggt
      421 aatcttgctg cttgtcttac aaccattagt tttttaccac aagcgataaa aactattaag
      481 tcgcgcgata ctcagcagct ctcacttccg atgtacctca tgtttgtcgc tggggtcgct
      541 ttgtggattg tttatggttt acacgttaaa tcaacgccaa taatcgtggg aaacgttatt
      601 acctttatgc ttgcaggaag tattttaatg gtcaaaatca aatcaacttt tggttctagg
      661 cgaggctgat taatatttat tatcttcgtt aaataagacc gtttgtcttt ttcatttaaa
      721 atttcaccat ccctatgaga actttgttta cttcgttact gcttcttttt ttatttgtta
      781 atcccctaaa ggctcaagaa cgtcctattg aaattgaaga cgaactcaat aacaaccgat
      841 tgaatttgta cgcagtaaac aaaaaccttc aagattttga tgtcattctt tatgtcaacg
      901 gaactggctt tcgtcagaga gccggaaaac cacgtgccgt gcgcgttcct gcgcgatctc
      961 gtgttgaagt gagcagttta attatcgagc gtggccaaga accgaaatat acctatacta
     1021 tagaagttca tgaagaactc tcgcgtcgtt cacttgttcg tgcagcagag ctcataaaaa
     1081 ttcaaccaaa atggccgcta acgatataca aaccaaccct ttgctctgct aattgtgacc
     1141 cattaatttc agcccttgat gagagcccct atctctatac cctcaccgaa attgacgcct
     1201 atccaaaagt gcgcgagcag ctcaaaaaat tgattgtggg tggtgaagaa cgtttgaatg
     1261 aaatggatac ccctattgtc atgatggccg gtaaaatgta tctaacactt accacttatg
     1321 aggaagtcat gagtacgatg gaggaactcg aataatcgcc tgtaaagagc gctttttcaa
     1381 tctttgatta ccagaacaga ggctttataa cccgtcaaaa gattccattc tttggcagaa
     1441 attattaagc ctttttcgtt gtatacatgc aactcagccg tgttaggccc actactccct
     1501 tgatttatgg cttcaaattc aatgcggttg gcccctggct gtagtgataa ggtgaaccct
     1561 gagaaactgg cgcctaagaa aacactggac tgaaccacgt caccattcac ataaacacga
     1621 atcaaatcac catcgacata ttcatggtca cgatatttta tttggacaaa atctcctgac
     1681 gtggtcacgt cgcccaaatc ttgatcccgc gcaaattctg gccgaggctc tttatccttt
     1741 tgaaacgctt taggggcctt acctggaata tgatccaaaa gcccatcaga ggccgtcata
     1801 tcgagttgtt ttgtttcctg actcggcggt ggaaactgca tttttggatc tctatcttta
     1861 aaaggaatgg ttaaactaat tgggggcttg ttttcaggta ccagacttgt gggcgttggt
     1921 cgaaaaaatg gattttctcc agaggcatta gaggtcgatc cgtcgatttg gccaaaactg
     1981 accccgcaaa tcatagaaat taaccctatc gtcaattgag ttcttatacc gcttaaatgc
     2041 cccattcttt ggatattcta aatcactgaa tattaaaatt aatgcttttc tctaccgcag
     2101 cgccatttta taatggtttt gacgaaagat taacacccta acctgaaatg aattctggat
     2161 ttatttacgg gtaccaccgg gcattgttgg gcgcaattcg attttactgg gaagactcct
     2221 ggggtgcatc gaaatcaatt gaatcacgat ttgacctaaa tcttcttttt gaattttcca
     2281 ataatcgtca tcattgggca catgatcatt aaaataggtc gctacagacc caggcataat
     2341 ggtcgtcatt ttcaccccat agtcccgaag atccaacatg gccgcttgag taaatcctgt
     2401 tacaccaaat ttactggcat tgtaggctga accacctgca aaaaaattgg ttccggctaa
     2461 actcgaaata ctgataaaat agccttgatg ctccatcaaa ctttgagcga agacttttag
     2521 ggtataaaag acaccattca aattggtgtt tatggtttca tgccactgct caacactaag
     2581 ctggtgcacc ggcgcaaaat gtcctaatcc cgcgttagcg ataactaaat caatggagcc
     2641 catattttcc aaagcgtttt ttgccgcgga ttccatttgc tcataatcgc gcacatcggc
     2701 tacaatacct agaactcttg cattattgct cttcgccaat gatgttaatt ctgaagtcgc
     2761 tttctggact gattcttctg tacgccctgt gatgaccaca gaaatgcctt cctgcaatag
     2821 tgattgcgca atcccgaacc caatcccttt ggttcctcca gttataaagg cttttttttc
     2881 ttttaaatgt atcatagcat gggttttttc tcctcttggc aaatatagtt gaagggcggc
     2941 tcaagtcaaa aacattggta tctttgttaa aaatattttg tgaatcaaaa tcgcttgttt
     3001 ttttgggtca gccgctttga aggaatctct tttttgctcc tgttaggggt ggctatgccg
     3061 cttaaatata tttggcactg gcctatgggt gttgaagtta ttggaatggc ccatggactg
     3121 ttgtttgtgg cctacgaagt gctcgcttta ggcttaaaat caattaaagg ttggaccttt
     3181 aaacagtggt taattattgc gttttgtgcg ttattgnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnta ttgccttttg ggccgtttta tgtagaaaag aactatttat catgacaact
     3421 tcagaattac tttttattac cgagtggatt cgtgattatt tgtattccca tgggtttcca
     3481 ttgttttggg ctaatttgat caatgccatt gtcgtaatcg ccattggttt attgatcatt
     3541 cgattgttgg accgagtcac acgaagtgtc attgtccaac tttttaaagc ctttagcaat
     3601 aagactaaaa cctcgtttga cgactatctc gtggaaagta attttcctcg ttttgtcgcc
     3661 cacctctccc cgcttgccgt gctgtggcac tttatcccaa taggcttata cgattatccg
     3721 gaaatggcgc aattggccac aaaagtcacg tctatgtatt ttgtggtttt gtgtgtttta
     3781 attgtgcgga gtatactgcg caccacaaaa acctatctga aggcgggtta tgagcagtat
     3841 aaggacaagc cactagagag ttatatgcag gttttgatga tgtttacctg gggtacaggg
     3901 atatttttta tcatcaattt aatgaccggt tttagtgttg aaagtctggc ctctttgggc
     3961 gcggcttctg ccatgatttt acttattttc aaagacacca tattgggctt tgtggccagt
     4021 attcaagtct ctattaacga tatggttcgt attggggatt ggattacctt ttctaaatac
     4081 ggagcagatg ggaccgtcat tgaaattaat ctagcttcag ttcgcgtgca gaactttgac
     4141 aataccttta ccacgattcc tacctacagt ttgatttctg attcttttca aaactggcgc
     4201 ggcatgcaag aatctggagg aagacggatc aaaaggtctt taatgatcaa acaaaattca
     4261 gttcgttttc tcaccccgga ggatgttatt gcctttaagc atattggttt aatcaagccc
     4321 tatatcgagc atcgcgaaaa ggacataacc aaatataatc ttcagaatca agcagataaa
     4381 tctctgctta tcaatggtcg aaaccaaact aatttaggcg tgtttagaaa atacatcgat
     4441 gcctatttac atgaaaatcc ggccattaat aaggatttat tcttgatggt acgccatcta
     4501 gccccgacgg atcacggtat cccgatagag gtttatgcct ttagtaatga caagcgttgg
     4561 gagaattatg agcacattca ggccgatatt tttgatcacc ttattgcttc ggtctcttat
     4621 ttcgaccttg aactttatga agccccctct tcaggggatg tccaatcatt aaaggtataa
     4681 gttatgaaca cgcgtgacgc ccaactcatc gccctgcgcc ctgagttgcc ccaggtgagt
     4741 attcatgatc aaatgtctga tcaagaattt tttcagaaca agacactccg ccctattttg
     4801 aaattacaaa acgacctgct tttggcctta tttcgtcact atattgaaaa gcataaaggg
     4861 gttttttacg aaatctcacc acagcggaag atggattata ttgaatccgc gattcacaag
     4921 gacatgaagt tccgcaatat tttaaaaggg ctcattctag ggcaatttac ccttgaagaa
     4981 taccaaatct acaccttaga ttcttcggca ataaacaaga gaatactcgc tatgattaag
     5041 gagcgactca agagtcaggt tcagttgtta aacccttgac aacttgaact gttacggact
     5101 tgtggtggtg gtttgtcgac agtaattagg acgtgtaatg cccg
//
LOCUS       DPUP01000154            5652 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_27264,
            whole genome shotgun sequence.
ACCESSION   DPUP01000154 DPUP01000000
VERSION     DPUP01000154.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5652)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(17..1399)
                     /locus_tag="DHV98_05550"
     CDS             complement(17..1399)
                     /locus_tag="DHV98_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HCK05821.1"
                     /translation="MESLIILIFVIGYLAITLEHPLRLDKTVPALIMAALIWGTLAVG
                     FGLGWFEVIDTEGSIFSALTGGEHAMHGFEQTLLHHLGKTAEILIFLIGAMTIVEIID
                     LHRGFEVLKGAVKTDSKKSLLWIIGILAFVLSAIIDNLTATIVLVTLLRKLLSDRNER
                     IWYASLVVIAANAGGAWSPIGDVTTTMLWIAKKVSAGGLIEFVVLPSILCFVLPFFIA
                     SYLKPFQGKITVSATDSQEAQKLLSSKTMLYLGLGMIVSVPVFKTLTHLPPYIGMMLA
                     VGVVWLVSEYIHPEEDFSKERRHLYSAHKALSRIDLSSILFFLGILMAVAGLESLVYG
                     ATESGESLGTLRYLAETLQGAIPNQDVVVILLGMFSAVIDNVPLVAASIGMYDAPMDS
                     VLWHFIAYAAGTGGSMLIIGSAAGVAAMGMERINFIWYLKKVAWLAFVGFIAGAGLFL
                     FIERVLFHHV"
     gene            complement(1416..2642)
                     /locus_tag="DHV98_05555"
     CDS             complement(1416..2642)
                     /locus_tag="DHV98_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013073323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid dehydrogenase"
                     /protein_id="HCK05822.1"
                     /translation="MRELLKKFEDKSPEIVFHWKDAETEAEGWTVINSLRGGAAGGGT
                     RMRIGLDQNEVLSLAKTMEVKFTVSGPAIGGAKSGINFDPNDPRKKGVLQRWYRAVSP
                     LLKSYYGTGGDMNVDEIHEVIPITEESGVWHPQEGVFTGHFSPSEADKINRIGQLRQG
                     VIKVVENPEYSPDVSRKYTVADLITGFGVSEAVRHYYEIYGGTLQGKRAIVQGFGNVA
                     SAAAYYLAQSGALIVGIIDRAGGVINEQGLTFEQVKNLFLNKNGNALAGDNLLSFDEV
                     NQRIWALKADVFAPCAASRLITQEQIQSLIDSGLEVVSSGANVPFADREIFFGPIMES
                     ADKQISLIPDFISNCGMARVFAYFMEKRVAMTDDAIFDDVSQTIKKALQRVYEQNPDP
                     RNISATAFEIALKQLI"
     gene            complement(2833..3909)
                     /locus_tag="DHV98_05560"
     CDS             complement(2833..3909)
                     /locus_tag="DHV98_05560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HCK05823.1"
                     /translation="MKKAKYNVIGVMSGTSCDGIDLAHCELSVTDDNQWGYSIIKAQT
                     IPYNSLWQRRLSAAVTLDKTAVQALDLAYTSLLNRTILDFIHEFKISELDLICSHGHT
                     VWHKPGQGITWQIGNLESIAQGLPCPVVCDFRTQDVALKGQGAPLVPIGDQLLFQEFD
                     ACINLGGFANISYQLQDAPTIAYDLCPFNIVLNYWANKLGSDFDENGHYARLGTVHPE
                     LLKQLNTLDYYRLTPPKSLGMEWVQSNFYPLYERFNLNPKDWLATAARHMVDQIHTSA
                     TKFDRILLTGGGAFNGFILELHDEAAPLKFFVPNKALINYKEALIFGLLGVLRYRGEV
                     NCLASVTGAIRDHSSGVIWNPVGR"
     gene            4022..5164
                     /locus_tag="DHV98_05565"
     CDS             4022..5164
                     /locus_tag="DHV98_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015362563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HCK05824.1"
                     /translation="MDFTLSEEHLMIRDAAREFAQTELLPGVIERDNLQQFPAEQVKK
                     MGEMGFLGMMVDPAYGGGGMDTLSYVLVMEELSKIDASSSVIVSVNNSLVCYGIQAYG
                     SEAQKDKYLRPLATGEALGAFCLSEPEAGSDATSQKTTALDQGDHYLLNGTKNWITNG
                     SSADYYIVIAQTDKEKGHRGINAFIVEKGMDGFSIGPKEDKLGIRGSDTHSLMFHNVK
                     VPKENRIGEDGFGFKFAMKTLSGGRIGIAAQALGIASGAYERARDYSKIRTAFGKEIY
                     KHQAISFKLADMYTQIEAARHLVFKAAWEKDNGINYDRSSAVAKLYASQVAMDTTIEA
                     VQVHGGNGFVKEYHVERLMRDAKITQIYEGTSEIQKVVISRALLDD"
     gene            complement(5184..>5652)
                     /locus_tag="DHV98_05570"
     CDS             complement(5184..>5652)
                     /locus_tag="DHV98_05570"
                     /inference="COORDINATES: protein motif:HMM:PF14121.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05825.1"
                     /translation="QYNQKVQHLKIHHDKTWRLGSWGYQSEIIYQNVLNGAEVIRVPD
                     LLTRQTVFFEDEWFKKAAKIQTGVRLKYFTEFNLPAYDPVLAEFYVQSEESLGAFPLV
                     DFFFQTKIRQTRLFLIYEHMNQLFQGENNHFSAPGIPYRDASLRFGLVWNFFK"
BASE COUNT         1750 a         1313 c         1140 g         1449 t
ORIGIN      
        1 ggtctcggtg aaattgttag acgtgatgaa aaagaacgcg ctcgataaat aaaaataaac
       61 cagcgccagc aataaaccca acaaacgcta accaggctac tttcttcaaa taccagataa
      121 aattaatgcg ctccatgccc atggcggcca ctcccgcagc agagccgata atcagcatac
      181 ttccgcccgt tcctgcagca taggcaataa aatgccaaag aacagagtcc attggcgcat
      241 cgtacatccc gattgaagcc gccacaagtg gaacattatc aataactgcc gagaacattc
      301 ccaaaagaat aacgacaaca tcttgattcg gaatagctcc ttgtagtgtt tccgccaaat
      361 aacgcaaggt acccaaagat tcaccgcttt ccgtggcgcc gtagaccaaa gactccaagc
      421 ccgcaacagc cataaggatt cctaggaaaa ataaaatact ggacaaatca attcttgata
      481 aggctttgtg cgccgaatat aaatgacggc gttctttact aaaatcttcc tctggatgga
      541 tgtattctga aaccaaccaa accaccccaa ccgctaacat catgccgatg tatggtggta
      601 agtgagttaa ggtcttgaat accggcactg aaacaatcat tcccagccct aaataaagca
      661 tcgtcttact gctaagtaat ttttgtgctt cctggctatc ggtagctgag acggttattt
      721 ttccctgaaa aggctttagg taagacgcaa taaaaaaggg caatacaaaa cacaaaattg
      781 agggcaagac cacaaattca atcagtcccc cggcagagac ttttttggca atccaaagca
      841 tcgtcgtggt gacatcacca ataggggacc aggcaccgcc ggcattagct gcaataacta
      901 ctaaagaagc gtaccagata cgctcatttc tgtcacttaa taatttacgc agcagggtca
      961 ccagtacgat tgtggcggtc agattatcaa ttatggccga taacacaaag gccaaaatcc
     1021 cgataatcca aagcaatgat tttttactat cggttttaac cgcgcccttg agcacttcga
     1081 aaccccggtg tagatcaata atctctacaa ttgtcatcgc cccgatcaag aatattaaaa
     1141 tttctgccgt cttacccaag tgatgcaaca aggtttgttc aaaaccgtgc atggcgtgtt
     1201 ctcctcctgt aagggcacta aaaattgagc cttcagtatc gatcacttca aaccatccca
     1261 gtccgaaccc aacagcaagc gtcccccaaa tcagggccgc cataattaac gcaggcactg
     1321 ttttatctaa gcggagtgga tgctctagag taatagccaa ataaccaatg acgaaaatga
     1381 gaattattaa agattccata gaagtatttt aaacattata taagttgttt cagcgcaatt
     1441 tcaaatgcag tagcactgat gtttcgagga tcaggatttt gttcataaac cctttgtaat
     1501 gcctttttaa tggtctgaga aacatcgtca aaaatcgcat catcagtcat ggcgacacgc
     1561 ttttccataa aataggcaaa aacacgggcc ataccacaat tactaataaa gtcagggatc
     1621 aggctaattt gtttatcggc tgattccata atcggaccaa aaaagatctc ccggtcagca
     1681 aaaggaacat tggcgcccga gctgacgact tccaagccag aatcaattaa cgattgtatt
     1741 tgctcttggg taattaaacg tgaagcagca caaggggcaa aaacatcggc cttaagggcc
     1801 caaatgcgct ggttaacttc atcgaaactc aaaagattgt cccccgccaa ggcattgcca
     1861 tttttattca gaaaaagatt tttaacctgc tcgaaggtca acccctgctc attaattact
     1921 ccaccagccc ggtcaataat gcctacgatc agtgcacccg actgagctag ataataagcg
     1981 gcagcagaag ccacgtttcc aaaaccttga acaatagcgc gcttgccttg cagtgttccg
     2041 ccataaattt cataataatg acgtacggct tcagaaacac caaaaccagt gattaaatcg
     2101 gcaacagtat actttctaga aacatccgga gaatattctg gattctcaac gactttgatc
     2161 accccttggc gcagttgacc aattcgattg attttatcgg cctcgctcgg actaaagtgc
     2221 cctgtaaaaa cgccttcttg tggatgccaa acaccgcttt cttccgttat tgggataacc
     2281 tcatgaattt catcgacatt catatcgccc ccagtaccgt agtaagattt cagtaaggga
     2341 gatacggcgc gataccaacg ctgcaagacg ccttttttac gcgggtcatt ggggtcaaaa
     2401 tttattcccg atttggcacc gccaatggca ggacctgata cggtaaactt aacctccatg
     2461 gttttggcca aactcaagac ttcgttttgg tccaacccaa tacgcatgcg ggttccacct
     2521 ccagcggcac ctcctctcaa actattgatt acggtccagc cttcggcctc ggtctcagcg
     2581 tctttccaat gaaaaacaat ttccggtgat ttatcttcga attttttaag caattccctc
     2641 atggatcgca atggtatttg gtcgttagaa gatcggtctt gaaacataat tttaagccga
     2701 atccatttct cacaaatata gaaaaatgac aggggctagg attaaattaa ggtaaaattt
     2761 ctgacccatt gaccgtgaat taatcctcat gggtcgatga acgaaaagag ttaaaatagc
     2821 cgctttaagg acctatcgcc ccactggatt ccagatcaca ccactactgt gatctcgaat
     2881 ggcacccgtt accgaagcca ggcaattcac ttctcctcga tagcgtaata caccgagcaa
     2941 accaaaaata agggcttctt tataattgat taacgcctta tttggaacaa aaaattttaa
     3001 aggagctgcc tcatcgtgca gttccagaat aaagccatta aaagctccgc ctcccgtcaa
     3061 taaaatacgg tcaaattttg tagcgcttgt gtgaatttgg tcgaccatat ggcgcgccgc
     3121 ggtggccaac caatctttag ggttcagatt aaagcgctca tagagcggat aaaaattaga
     3181 ctgcacccat tccataccta aggatttggg cggagttaaa cggtaatagt ctaacgtgtt
     3241 gagctgtttg agcaattccg gatgaaccgt gcctaatcga gcataatgac cattttcatc
     3301 aaaatcagaa ccgagcttat tcgcccaata attcagaaca atattaaaag gacataaatc
     3361 ataagcgatg gttggcgcat cctgaagttg ataggaaata ttcgcaaaac cacccaaatt
     3421 aatacaggcg tcaaattctt gaaataacaa ttgatcccca atgggcacta agggagcgcc
     3481 ttgtcctttt agtgcgacat cttgagttct aaaatcacag accacaggac atggcaaccc
     3541 ttgagctatc gattctaaat tgccgatttg ccaggtaatg ccttgcccag gtttgtgcca
     3601 aacggtgtgt ccgtggctgc aaatcaaatc gagctctgat atcttgaact catgaataaa
     3661 atctaaaata gtgcgattaa gaagtgatgt ataggctaaa tccaaagcct gcacggctgt
     3721 tttatccagg gtaaccgcag cagacaaacg cctttgccaa agcgaattat acgggattgt
     3781 ttgcgcttta attattgaat aaccccattg attatcatcg gttacgctca attcacaatg
     3841 ggctaaatca atcccatcgc acgaagttcc gctcatgacg ccaatcacat tatatttcgc
     3901 ttttttcatc ctgttaaatt taaaggcttt tattgacatt aaaggcacaa tccaatatct
     3961 ttgcgcttta acgaaaacgt tttaggctag tatctagccc cccaaaaaaa acaacgacac
     4021 catggacttt accttatctg aagaacacct aatgattcgg gatgctgccc gagaatttgc
     4081 ccaaactgaa ctgcttccag gagttattga acgggataat ttgcaacaat ttcccgcaga
     4141 acaagtaaaa aaaatggggg aaatgggatt tctcggtatg atggtagacc cggcgtatgg
     4201 gggtggcggc atggacacgc tatcctatgt tctggttatg gaagagctca gcaaaattga
     4261 cgcttcttcc tcggtaattg tctctgtaaa taactcttta gtctgttatg gcatccaagc
     4321 ctatggttct gaggcccaaa aagacaaata tctcagacca ctcgccacag gagaagcctt
     4381 aggtgcgttc tgcttgagcg aacccgaagc gggcagtgac gccacttctc aaaagacaac
     4441 agctctagat cagggcgatc attacctact caatggcaca aaaaactgga ttacaaacgg
     4501 cagttctgcc gactattaca ttgttattgc ccaaacagat aaagaaaaag gccaccgcgg
     4561 aattaatgcc tttattgttg aaaaaggtat ggatggtttt tctatagggc caaaagaaga
     4621 taaattgggc attcgcggga gcgacaccca tagcttaatg tttcacaatg taaaggtgcc
     4681 caaagaaaat cgcattggtg aagacggctt tggatttaaa tttgccatga aaactttaag
     4741 tggtggtcgt atcggtattg cagcacaagc tctgggtatc gcctctggag cctacgaacg
     4801 cgcaagagac tattccaaaa tccgcaccgc tttcggtaaa gaaatctaca aacatcaagc
     4861 gatctctttt aaattggcgg acatgtatac ccaaatcgag gcggcaagac atttggtctt
     4921 caaagctgct tgggaaaaag acaatggaat taattatgac cgcagcagtg cggtagccaa
     4981 actctacgcc agtcaggtcg cgatggacac gaccatagaa gccgtccaag tacacggagg
     5041 caatggtttt gttaaggagt atcatgttga gcgccttatg cgcgatgcca aaatcacgca
     5101 gatttatgaa ggaacgagtg agattcaaaa agtagtcatt tctcgggcct tacttgacga
     5161 ctaaaatatc gtccatcagc actttatttg aagaaattcc agaccaaacc gaaacgcaat
     5221 gaagcgtctc gatagggtat tcctggagca ctgaaatgat tgttttcccc ttgaaacaat
     5281 tggttcatgt gctcatatat caaaaatagt cgagtttgtc tgattttggt ttgaaagaag
     5341 aaatccacaa ggggaaacgc ccccagtgat tcttcagatt gaacataaaa ttctgccaaa
     5401 accggatcat aagccggcaa attaaattcc gtgaaatatt tcaaacggac accggtttga
     5461 atttttgctg cttttttgaa ccactcatct tcaaaaaata cagtttgtcg cgtgaggaga
     5521 tcaggaaccc gaataacctc cgccccattt aaaacatttt ggtaaatgat ttctgattga
     5581 taaccccatg atcccaatcg ccaagtctta tcatgatgaa tttttaagtg ctgcaccttt
     5641 tgattgtatt ga
//
LOCUS       DPUP01000155            4196 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13206,
            whole genome shotgun sequence.
ACCESSION   DPUP01000155 DPUP01000000
VERSION     DPUP01000155.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4196)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4196)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4196
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            175..999
                     /gene="folP"
                     /locus_tag="DHV98_05575"
     CDS             175..999
                     /gene="folP"
                     /locus_tag="DHV98_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HCK05826.1"
                     /translation="MTINCAGTLIDLNTPKVMGILNQTPDSFYDGGRYSNPKAVLDRV
                     EQMLFNGASFIDIGGYSSRPGAPEVSEQEELNRVIPTINTVVKAFPDAVISIDTFRSA
                     VAKAAIDSGAAMINDISGGDRDPEIYRVAARHQVPYILMHMRGTPQTMSTLTDYDNVV
                     MEVTQDLAKKLKQIRPHGVNDLIVDPGFGFAKNLVQNYTLLGKLDHLKLLNTPILVGV
                     SRKSMIYKLLQTNPENALNGTTAANTIALLKGASILRVHDVAPAIEVVKLVGALKN"
     gene            1024..1797
                     /locus_tag="DHV98_05580"
     CDS             1024..1797
                     /locus_tag="DHV98_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HCK05827.1"
                     /translation="MELFDIRILDIVDIVLVAFLLFYLYRLVKGTVAINIFIGIVMVY
                     ATWKLTEFLEMQLLSRILGGFLGVGMFALIVVFQQEIRKFLLMLGTTNFSGRRKLLKR
                     FQLRPNTSFNTDIHAILSACQKMAQSKTGAIIVLQRNNSLDFVKSTGDAMSVEVNQPI
                     LESIFYKNSPLHDGALIIEDNTIKATRVILPVTSETNLPARFGLRHRAAVGITERTDA
                     VCLVVSEESGQISYLKEGDFVLFKDLEELERTLAKDLSA"
     gene            complement(1858..3639)
                     /locus_tag="DHV98_05585"
     CDS             complement(1858..3639)
                     /locus_tag="DHV98_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic ABC transporter ATP-binding protein"
                     /protein_id="HCK05828.1"
                     /translation="MAKSSGSAFDFKLFMRLLSFTRPYRGTFIFVAFAAVGLSVAGLL
                     GPIFLKNTIDLGMIPKDYSTMLFYIGLIVVALVLEVVFQFSFIYYANWLGQTVIRDLR
                     IKLFGKMMRFKMAYFDKSAVGRLTTRTVNDIETIASIFSEGLFTIASDVLKMLVIAIY
                     MLYESWPLALISFSILPILIYATRLFQRAMKGAFEEVRNQVANLNTFVQERITGMKIV
                     QIFVREQTEYDTFVAINKEHRKAWIKTVWYNSIFFPIAEISGSVALGLIVWYGGMNVL
                     PADVVSDSGMTLGLITAFVQLSQMLFRPLRMIADKFNTLQMGMVAANRVFEILDTQAH
                     IQDQGTQVAHDIQGNIEFKNVHFGYNPNEPVIKDINFSVDAGQTIALVGATGAGKSTI
                     INLLTRFYEIDKGQINVDGVAIKDYTLAGLRGHIAVVLQDVFLFADTILQNITLGDPE
                     ITEEMVVAAAQEIGVHDFICSLPQGYHYNVKERGTTLSSGQRQLIAFLRAFVSKPSIL
                     ILDEATSSVDSYSEELIQNATDRITQGRTSIVIAHRLATIQKADQILVMEQGHIVERG
                     THADLIKKEQGPYKSLYEVQFLAQPEP"
     gene            complement(3651..>4196)
                     /locus_tag="DHV98_05590"
     CDS             complement(3651..>4196)
                     /locus_tag="DHV98_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HCK05829.1"
                     /translation="AAFDHEQLKERLNNYLPVDVVIYRIFPVSPESHARFDATARTYE
                     YWLTLGKDPFLYQGAYAIHKTPDFDLMNQVAQKLLSHRDFQCFSKSRTDVMTYNCAVH
                     HAQWTQRDGIWVFTITADRFLRNMVRAVVGTLLEVGWGKMQQDHFDQVLQSKNRSSAG
                     PSVPGHALYLTKIDYPKTIVS"
BASE COUNT         1233 a          982 c          891 g         1090 t
ORIGIN      
        1 ccgttaagga aggtaagcgc aaaatacgcc atgcacttcc gtagtctttc atcttgtcgg
       61 aaaacaactg tcggcatgcg gtaatgacct gatcatactg ttttgcggtt ttgcccatga
      121 gttatcttag attttgcgta aatttcgctc aaataaatca atttaaaaaa taccatgacc
      181 atcaattgcg ctggcaccct tatcgactta aacaccccaa aggtcatggg cattttaaat
      241 caaaccccgg actcttttta tgacggtgga cgctacagca atcctaaagc cgtactcgac
      301 cgagtagagc aaatgctttt taacggggct agtttcattg atattggtgg ctatagcagc
      361 agaccaggag ccccagaggt gtctgagcaa gaagaactca atcgggtcat tccaacgata
      421 aacactgtgg tcaaggcctt tcctgatgcc gtaatttcaa ttgacacctt tcgcagtgcg
      481 gtcgcaaaag ccgcgataga ctccggcgcc gccatgatta atgatatctc agggggagac
      541 cgtgacccag aaatttatcg agttgctgca cgccatcaag tgccttatat tttaatgcac
      601 atgagaggca ctcctcagac catgagcaca cttaccgatt acgacaatgt ggttatggag
      661 gtcacacaag acctggccaa aaaattaaaa caaattagac cccatggggt gaatgacctg
      721 atcgtcgatc caggctttgg attcgccaag aacttagtgc agaattatac cttactcggg
      781 aaattagatc atctaaaact tttaaatacc ccaatacttg tgggcgtttc aagaaaatca
      841 atgatttaca aattacttca aaccaatccc gaaaacgcac taaatggcac cacggcagca
      901 aatacaatcg ccttgctcaa aggggcgagc atcctaaggg tgcacgacgt agccccagcc
      961 attgaagtcg ttaaactcgt aggggccttg aaaaattaag tacctttaaa tcaaaatagc
     1021 tccgtggaac tcttcgacat acgtattttg gacatagtag acatcgtttt ggtggctttc
     1081 cttttgttct atctctatcg tctggtcaaa ggcaccgttg ccatcaatat ctttattgga
     1141 attgtgatgg tttacgcgac atggaagctc actgagtttt tggagatgca attactgagt
     1201 cgtattcttg gcgggttttt aggcgttgga atgtttgcct taattgtcgt ttttcaacaa
     1261 gaaatacgca agttcttgct catgttaggg accacaaact tttccggacg tcgcaaacta
     1321 ttaaagcgct ttcaactcag acctaatacg tcctttaata cagatatcca tgccattttg
     1381 agtgcctgtc aaaaaatggc ccaatcaaaa acaggggcca ttatcgtgct gcagcgcaac
     1441 aatagtctgg attttgtaaa aagtacgggg gacgccatga gtgtcgaagt gaatcaaccc
     1501 atcttggaga gtattttcta caagaatagt cccttgcatg acggcgcctt gatcattgaa
     1561 gacaatacaa taaaagccac acgggtgatc ctcccggtca ccagcgaaac taaccttcct
     1621 gcccgctttg gtctaagaca cagagccgcg gtaggcataa ccgagagaac ggacgctgtt
     1681 tgcttggtcg tctcagagga aagcggtcaa atatcctatt taaaagaggg agattttgtt
     1741 ctgtttaaag acttagaaga gctcgaaaga actttggcca aagacctgag tgcttaagtt
     1801 taaaaaggcc tgagtgctta agtttaatcg gaaatactgc cgcaatttat aggcgtgtta
     1861 tggctctggc tgggccaaaa attgtacctc gtaaagtgat ttgtagggcc cttgttcctt
     1921 ttttataaga tcggcatgcg ttccacgctc cacgatatgc ccctgctcca tgactaaaat
     1981 ttgatctgcc ttttgaatgg tggccaaacg atgagcaatc acaatcgaag tgcgtccttg
     2041 tgtaatgcga tccgtggcat tttgaatcaa ttcctcagag tagctgtcta cagaagaggt
     2101 cgcctcatcc aaaattaaaa tactgggctt actgacaaag gcgcgtaaaa atgcaatcaa
     2161 ttgtctttga cctgaagaaa gggtggtccc gcgttcttta acattatagt gatagccctg
     2221 gggcagactg caaataaaat catggacacc gatctcctgg gcagccgcga ccaccatttc
     2281 ctcggtaatc tcagggtccc ctaatgtgat gttttgtaaa atggtatcgg caaacaaaaa
     2341 cacatcctga agcaccacgg cgatatgacc gcgcagacca gccaaagtat aatccttaat
     2401 agcaacaccg tccacattga tttgtccctt atcgatctcg taaaatcgag tcaacaaatt
     2461 aattatcgta gattttccag cccctgtagc cccaaccagc gcaatcgtct gcccggcatc
     2521 cacagagaaa ttaatgtctt ttattacggg ctcatttgga ttatagccaa aatgaacgtt
     2581 cttaaattca atattcccct gaatgtcgtg tgctacctgt gttccttgat cttgaatgtg
     2641 ggcctgggtg tctaaaattt caaacacacg atttgcagcc accatgccca tctgcagtgt
     2701 gttaaactta tcggcaatca tgcgcagggg tctaaatagc atttggctga gttgaacaaa
     2761 cgcggtaatc aaccctagcg tcattccaga atcagaaaca acatcggccg ggagcacatt
     2821 catcccgcca taccatacaa tcagtcccaa agccactgat ccagaaattt ctgcgatcgg
     2881 aaaaaagata ctgttgtacc aaacggtttt aatccaagct ttacggtgtt ctttattaat
     2941 ggcgacaaag gtgtcgtact cggtttgctc acgcacaaaa atctgaacaa ttttcatccc
     3001 tgtaatccgc tcttgaacaa aggtgttcag gttcgccact tgattgcgca cctcctcaaa
     3061 agcgcctttc atagcgcgtt gaaataaacg cgtcgcataa atcagtatcg gcaaaataga
     3121 aaacgaaatc aacgccagcg gccagctctc ataaagcata tagattgcga tgaccaacat
     3181 ttttaataca tcactggcaa tggtaaagag tccttcacta aagatactgg caatggtctc
     3241 aatgtcattg acggttctgg tggtgagtcg tcccacggca cttttatcaa aataggccat
     3301 tttaaagcgc atcattttac caaaaagctt aatccgcaag tcgcgaatta ccgtctgccc
     3361 gagccagttt gcgtaataga taaaactaaa ttgaaaaact acctccagga ccaaagccac
     3421 cacgatgagc ccaatgtaaa aaagcatcgt ggaataatcc ttgggaatca tcccgagatc
     3481 aatggtgttc ttgagaaaaa taggccccaa aagaccggcc acagaaagtc cgacagcggc
     3541 gaaagctaca aaaataaaag tccctcgata gggccttgta aagctcaaca agcgcataaa
     3601 gagcttaaaa tcaaatgcag aaccgctgga tttcgccata tgttgatgat ttaagacacg
     3661 atggtcttcg ggtaatcaat ttttgtcaaa tatagggcat gtcccggaac tgaaggtccg
     3721 gcagacgatc tgtttttact ctgcagtacc tggtcaaaat ggtcctgctg cattttaccc
     3781 cagccgactt ctaacagcgt acccactact gcacgaacca tattgcgcaa aaaacgatct
     3841 gcagtaatgg taaagaccca aataccgtcc cgctgagtcc actgggcatg atgcacggca
     3901 cagttataag tcatcacatc ggtcctcgat ttggaaaaac attgaaaatc gcggtgactc
     3961 aataattttt gagccacttg attcatcaaa tcaaagtcgg gcgttttgtg aatggcataa
     4021 gccccttggt ataaaaaggg gtcttttccc agcgtgagcc agtactcata tgttctggcc
     4081 gtggcatcaa agcgggcatg gctttctggg cttacaggaa aaattcgata aatcaccaca
     4141 tccacaggca ggtaattgtt caaacgctcc ttcaattgct cgtgatcaaa ggcggc
//
LOCUS       DPUP01000156            3989 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5799,
            whole genome shotgun sequence.
ACCESSION   DPUP01000156 DPUP01000000
VERSION     DPUP01000156.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3989)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3989)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3989
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>320
                     /locus_tag="DHV98_05595"
     CDS             <1..>320
                     /locus_tag="DHV98_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014034294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK05830.1"
                     /translation="LPIYLFYRGPNQNAQTKSEGIASVDLAMSKDLFKEKMTLSFNVN
                     DLLNSRKRRSFTLTDNFESDSVFQWRVRTWTFGVLYRFNQKKSDRGRNNNRGGGYDDE
                     DRKS"
     assembly_gap    321..443
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(665..850)
                     /locus_tag="DHV98_05600"
     CDS             complement(665..850)
                     /locus_tag="DHV98_05600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05831.1"
                     /translation="MIKIVLVGTNLRSFQGFLNHLLNFHTRRIMVYKPVDNSGRTHGI
                     IKISFYICGQNKAHVRF"
     gene            849..2240
                     /gene="fumC"
                     /locus_tag="DHV98_05605"
     CDS             849..2240
                     /gene="fumC"
                     /locus_tag="DHV98_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HCK05832.1"
                     /translation="MEYRIEKDTMGPVEVPANKLWGAQTERSRNNFKIGPAASMPLEI
                     VYGFGHLKKAAAYTNCDLGVLSAEKRDLIAQVCDEILSGQHDDQFPLVVWQTGSGTQS
                     NMNVNEVIANRAHQIAGKEIGQGEKTIQPNDDVNKSQSSNDTFPTGMHIAAYQKIVSV
                     TLPGLEQLQKTLEQKSKDFDQVVKIGRTHLMDATPLTLGQEFSGYAAQLTYGIKALKN
                     TLPHLSELALGGTAVGTGINTPAGYAEKVAQYIAEFTGLPFVSAANKFEALAAHDALV
                     ETHGALKQVAVSLNKIANDIRLLASGPRSGIGEIIIPANEPGSSIMPGKVNPTQCEAM
                     TMVCAQVLGNDVALSVGGLQGHFELNVFKPLMAKNLLESAQLIGDACVSFDLHCAQGI
                     EPNYKVIEEQLNKSLMLVTALNTKIGYYKAAEIANTAHANGTTLREEAINLGYVTSEE
                     FDAWVKPEDMVGR"
     gene            2419..>3448
                     /locus_tag="DHV98_05610"
     CDS             2419..>3448
                     /locus_tag="DHV98_05610"
                     /inference="COORDINATES: protein motif:HMM:PF07695.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05833.1"
                     /translation="MKRLVLVLTFGLLWSTNAAQARPITQQIKLPICALTPVFTGVIG
                     NHEDHKFFRTFVETLNLNEVNSSLNQVNSNAASAHENVTFLKENSYKSPLQMSRSNQN
                     AAQDSASGLMFFQQTHIFSNGIFYGFVLMLVVLNAFCFVLFKDKTFGLFALGMTTLSA
                     LIFQFDGLAALFTLEFTEGLFLEIGTLWLLTALFSVFSHQYLLGKEYAPRLQILSVIL
                     LSLSGIAVGFYAFLESILYLQIAQVILMTLVGRYLFLGIIRAKDSGYAKIFIIALTPF
                     LIVLTDQLIYNQLGQSLFGLSDGLLKISATLLVLTMTYGLLYRMQSLKGEQDMRQLEM
                     RIFMDRSEE"
     assembly_gap    3449..3482
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3537..3746
                     /locus_tag="DHV98_05615"
     CDS             3537..3746
                     /locus_tag="DHV98_05615"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05834.1"
                     /translation="MQYDLDGFEIKLLQYISEGKTNAVIAKKMKTTVEEIEDRTKDLY
                     QKLDIAEHIREDEALLKSQPDYLYN"
     gene            complement(3768..>3989)
                     /locus_tag="DHV98_05620"
     CDS             complement(3768..>3989)
                     /locus_tag="DHV98_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014034262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05835.1"
                     /translation="PGLRGKWTFNVLSIFAYASIMMTYFGVNFYLTGLHSYASGDVPV
                     TPSFIYYLLGFFVLLSALSYWRWQGIKKA"
BASE COUNT         1185 a          819 c          765 g         1063 t
ORIGIN      
        1 ctcttccgat ctatttattt tatcgtgggc ccaatcaaaa cgcgcagaca aaatccgagg
       61 ggattgcttc tgttgacctg gctatgagca aagacctgtt taaggaaaaa atgactcttt
      121 cctttaacgt caatgatttg ctcaatagca gaaaacgccg cagctttacc ctaacggata
      181 attttgaaag cgacagtgtg tttcaatggc gtgtgcgtac ttggactttt ggggtgttat
      241 accgatttaa ccaaaagaaa tctgatcgtg gcagaaataa caatcgtggc ggcggctacg
      301 acgacgaaga tcggaagagc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnccttttt tcatttgaga aaaatcccaa aatatatctt
      481 ttttacttga gccttaattt tgacttaagc cttactttga tcttgagcgg acttttgacc
      541 tttgagttta aaatgctcaa taagcgcacc accaatccaa tatggaatga atgacacaag
      601 aaaaatcatc aaccaaaatc ctatagtgag gatggttaaa aatgctaaga atcctaaata
      661 ttgatcaaaa tcgaacatgg gctttatttt gaccacaaat ataaaatgaa attttgatta
      721 ttccatgagt gcgccccgaa ttatccacag gcttataaac cataatacgg cgcgtatgaa
      781 aattgagcaa atgatttaaa aagccctgaa aagaccttaa atttgtaccg actaaaacaa
      841 ttttgatcat ggaatacaga atagagaaag ataccatggg gcctgtagaa gttccagcta
      901 acaaactatg gggcgcgcaa accgagcgtt cacggaacaa ctttaaaatc ggacctgcag
      961 cctctatgcc actagaaatt gtatacggtt ttggccacct taaaaaagca gccgcctaca
     1021 ccaattgtga tttaggggtc ttaagcgccg aaaaacgaga tttaatcgct caggtttgtg
     1081 atgaaattct ttcggggcaa cacgatgatc aatttccttt agtggtttgg caaacaggaa
     1141 gcggaacaca aagcaatatg aatgtgaatg aagttattgc gaatcgtgcg catcaaattg
     1201 caggtaaaga aattggacag ggagagaaaa ccatccaacc taatgacgat gtcaataagt
     1261 cgcagtcgtc taacgacacc tttcccaccg gaatgcatat tgccgcctat caaaaaattg
     1321 tatcggtaac cttacccggt ttagaacaat tacaaaagac cctggaacag aaatcaaaag
     1381 attttgatca ggttgtgaaa ataggacgca ctcatttaat ggatgcgacc ccgttaacac
     1441 taggacagga atttagcgga tatgccgctc aattaaccta cgggataaaa gcccttaaaa
     1501 atacgctgcc gcatctatca gaactcgccc tgggcggtac tgctgtcggt acaggaatca
     1561 atacgcctgc gggttatgcc gaaaaggtcg cccaatatat cgcagaattt accgggctgc
     1621 cttttgtcag tgccgccaat aaattcgaag cccttgccgc acatgatgcc cttgtggaaa
     1681 cccacggtgc gcttaagcaa gttgccgttt cactcaacaa aatagccaac gacattcgac
     1741 ttcttgccag cgggccacgc agtggcattg gcgaaattat cattccagct aacgagccag
     1801 gttcctcaat catgccgggt aaagtaaatc caactcaatg cgaagcgatg accatggtct
     1861 gtgctcaagt attgggtaat gacgttgcgc taagtgtcgg tggattacag ggtcattttg
     1921 agcttaatgt gttcaaaccc cttatggcca aaaacctatt ggaatcagcc caattaattg
     1981 gtgacgcctg tgtgagcttt gatcttcact gcgctcaagg tattgaacca aattataagg
     2041 tcatcgaaga acagctcaat aaatctttga tgttagtcac tgcactgaac actaaaattg
     2101 gttattacaa agcggccgaa atcgcgaata ctgcccatgc taatggtacc accttacgcg
     2161 aagaggccat caatctgggg tatgttacct cagaggaatt tgatgcttgg gtgaaacctg
     2221 aggatatggt cggtcgttaa tcccatttaa ttatttccaa tcctcaattt caaattgatt
     2281 taaggagcga ctcgcgtcgc tccttttttt tatttatttt caaaaaacat taatatttat
     2341 cgatgaaata ccaataacat agattaaaag caaaattatt gtatcttagt aggacccaaa
     2401 tttgataatt aacctactat gaaacgacta gttctagtat tgacttttgg ccttttatgg
     2461 tcaacaaatg ccgcccaagc gcgcccaatt acacaacaaa ttaagctgcc aatttgtgct
     2521 ttaaccccag tatttacggg tgttattggt aatcacgagg accataaatt tttcagaact
     2581 tttgtggaga ctttgaattt gaacgaggta aattcatccc tcaaccaagt gaactcaaat
     2641 gctgcatcag cccatgagaa tgtgacgttc ctcaaagaaa attcctacaa atcaccgctt
     2701 caaatgagcc gttcaaacca aaatgctgcg caagattctg cctctggttt gatgtttttt
     2761 caacagaccc acattttttc aaatggtatt ttttacggat ttgtcttgat gctcgtagtg
     2821 ctcaatgcct tttgctttgt tctgtttaaa gacaaaacct ttggcctttt tgctctaggc
     2881 atgacgactt tgagtgccct gattttccaa ttcgacggat tggcagcgct tttcactctt
     2941 gaatttacag aaggtctctt cctggaaata ggaaccttat ggttgctcac cgccttattc
     3001 agtgtttttt cgcaccaata tcttctgggt aaagaatacg ccccaaggct tcagatactc
     3061 tctgttattc ttttgagctt aagtggcatt gccgtggggt tttacgcttt tttagaatca
     3121 atattatacc ttcaaatcgc acaggttatt ttgatgaccc ttgtaggacg ttacctcttt
     3181 ttggggatta tacgcgccaa agacagcggt tatgcaaaaa tctttattat cgccttaacg
     3241 ccgttcctaa ttgtcctaac cgatcaattg atttacaacc agctcggaca atctttgttt
     3301 ggactcagcg atggtctcct aaaaattagt gccaccctac ttgtgctgac gatgacctac
     3361 ggcttacttt acagaatgca gtccctaaag ggagagcaag acatgagaca actcgaaatg
     3421 cgcatcttta tggatagatc ggaagagcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nngcacgcgc taagactgaa aaactcgtcg aggacctcta tttagaaaat ttaatcatgc
     3541 aatatgatct cgatgggttt gaaattaaat tgctgcagta catctctgaa ggtaaaacta
     3601 atgccgttat tgccaaaaaa atgaaaacaa cggttgagga gattgaagac cgcacaaagg
     3661 acctctatca aaaacttgat atcgccgagc acatccgtga ggacgaggcc ttattaaaaa
     3721 gtcaaccaga ttatttatac aattaaaccc tctgattatt gattcgttta ggccttttta
     3781 attccttgcc aacgccaata agacagcgcg ctaagcaata cgaaaaagcc caatagataa
     3841 taaataaaac tcggggtgac aggaacatca ccactagcat aagaatgcaa tcctgtaaga
     3901 taaaaattca cgccaaaata ggtcatcatg atactggcat aggcaaaaat tgacagtaca
     3961 ttaaacgtcc attttccgcg aagcccagg
//
LOCUS       DPUP01000157            4573 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14719,
            whole genome shotgun sequence.
ACCESSION   DPUP01000157 DPUP01000000
VERSION     DPUP01000157.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4573)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4573)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1053
                     /locus_tag="DHV98_05625"
     CDS             <1..1053
                     /locus_tag="DHV98_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008990214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCK05836.1"
                     /translation="MYDAYALTGAVFNPDFGQNKAFAEEIGIPLDRIYPDFDTMVAAE
                     LALPQEERIQVFSVLTPNFLHFPMAKKLMESGFHVICEKPMTMTHEEALVLEQIQKDK
                     GVLFALTHTYTGYPMIRQMKAMIQDGAIGAIQKVDAQYYQGWINPIIHDPKQRASTWR
                     LDPTKSGISCCMGDIGVHAYQMLEYVTGQKIESILADLGHVYDDNQMDIDGTVLLRLS
                     KHVKGVLRASQIATAEENNFSLAIYGREGALKWEQENPNYLTLLKDGQPAQILKPGHS
                     YNSAFSLEGTKLPPGHPEGIFDAMGNIYRGMAKAVRGESFNEGAFPSMEDGVRGMKFI
                     ETAVASHADGNVWKTL"
     gene            1081..>1198
                     /locus_tag="DHV98_05630"
     CDS             1081..>1198
                     /locus_tag="DHV98_05630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AP endonuclease"
                     /protein_id="HCK05837.1"
                     /translation="MKTIKGPAVFLAQFMDDKAPFNSLDGLCQWAADLGYKGI"
     assembly_gap    1199..1406
                     /estimated_length=208
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1407..>1605
                     /locus_tag="DHV98_05635"
     CDS             <1407..>1605
                     /locus_tag="DHV98_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AP endonuclease"
                     /protein_id="HCK05838.1"
                     /translation="YKGIQIPTWESRLIDLTLAGQSKAYCDELQGKIRSYGLEITELS
                     THLQGQLVAVHPAYDLMFDNFA"
     assembly_gap    1606..1777
                     /estimated_length=172
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1778..>2376
                     /locus_tag="DHV98_05640"
     CDS             <1778..>2376
                     /locus_tag="DHV98_05640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AP endonuclease"
                     /protein_id="HCK05839.1"
                     /translation="PEDCKNNPKKRTEWARAQLISAAKASGHLGLKAHATFSGALLWH
                     TWHPWPQRPDGLVELGFAELAERWLPLLNEFQDNGVAVCYEIHPGEDLHDGVTFERFL
                     EATGNHKAVNILYDPSHFVLQQLDYLKYIDHYHEFIKAFHVKDSEFNPDGKRGAFGGY
                     GDWKDRAGRYRSLGDGQIDYKSVFSKLTEYGCDVWAVME"
     assembly_gap    2377..2467
                     /estimated_length=91
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2468..2641
                     /locus_tag="DHV98_05645"
     CDS             <2468..2641
                     /locus_tag="DHV98_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AP endonuclease"
                     /protein_id="HCK05840.1"
                     /translation="DVWAVMEWECVIKSPEQGAREGARFIQDRIIEVTTKRFDDFAGA
                     EIDQERLKKILGL"
     gene            2741..3532
                     /locus_tag="DHV98_05650"
     CDS             2741..3532
                     /locus_tag="DHV98_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HCK05841.1"
                     /translation="MTKLNFAIIGLLALAAACGQGPQQPAATPVTPTPEEVTKPEETE
                     VWTPVPNKVDPFGQNGAPSDAIVLFDGSNLERWISAAESTAAQWNINTDGSMTVANGT
                     GDIQTKDNFGSVQLHVEWRSSPENTASGQAKSNSGVYLQNRYEVQVLDNNDNPTYVNG
                     MVGSLYKQSPPLVMASVPTGSWNAYDIIYHAPEFDAQGGMVVAPKITVLQNGVLIQDH
                     FELQGTTEYIGWPKVSAHGPGPIKLQDHNDHSGVSYRNIWVRPLN"
     gene            3542..>3900
                     /locus_tag="DHV98_05655"
     CDS             3542..>3900
                     /locus_tag="DHV98_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HCK05842.1"
                     /translation="MNSMKTLLSLSLIVALTASCQNNNKSDLSMTKEDTTGQTTPQEE
                     WLTLFDGTNFDQWRGYLSQGMPEAWSIQDSAMVFTPGGQGGQNIITKDVFYNFELSLE
                     WNIAPGGNSGIFWGVIE"
     assembly_gap    3901..4020
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4021..4430
                     /locus_tag="DHV98_05660"
     CDS             <4021..4430
                     /locus_tag="DHV98_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013550527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HCK05843.1"
                     /translation="GVIEDPAYPETYQSGPEIQVLDNAKHPDAFVGEGTHTAGALYDM
                     IAPSADFTNPAGSWNHCVLRVDHRINKGLVLMNGNQIVEFPLYGPEWADMVAQSKFAD
                     WPVFGKSPKGHIGLQDHGDQVAYRNVKVKHLID"
BASE COUNT         1160 a          902 c          958 g          962 t
ORIGIN      
        1 atgtatgatg cctatgccct gactggagcg gtttttaatc ccgattttgg ccaaaacaag
       61 gcttttgccg aagaaatcgg tattccattg gaccgcattt atccagattt cgacactatg
      121 gttgcagccg aattggcgct gccacaagag gaacgcattc aagttttttc ggtactcacc
      181 ccgaatttct tgcattttcc gatggccaaa aaattaatgg aaagcgggtt ccatgtgatt
      241 tgtgaaaaac ccatgaccat gactcatgag gaggctctgg ttttggaaca aattcaaaag
      301 gacaaaggcg tattatttgc cctaactcat acctacacgg gctatcctat gatccgtcaa
      361 atgaaagcca tgattcagga tggggccatt ggggcgattc aaaaagttga tgcgcaatac
      421 taccaaggat ggattaatcc gatcatccat gatccaaagc aacgcgcttc tacctggcgt
      481 ctggacccaa caaaatcagg aattagctgc tgtatgggag atatcggagt acacgcctac
      541 caaatgcttg aatacgtcac cggtcaaaaa atcgaatcaa ttctggccga ccttggccat
      601 gtctatgacg acaaccaaat ggatatcgac ggtaccgtat tgttgcgtct tagcaaacac
      661 gtaaaagggg tgttacgggc cagtcaaatc gctaccgccg aggaaaataa ctttagcctt
      721 gccatttatg ggcgtgaagg cgccttaaaa tgggaacagg aaaacccgaa ttatttgacc
      781 ctgcttaaag acgggcagcc cgctcaaatc ctcaagccgg gacacagcta taacagcgcg
      841 ttttcactag agggcaccaa attacctcca gggcatccgg aagggatttt tgacgccatg
      901 ggcaatattt atcggggtat ggccaaggcc gttcgagggg agtcctttaa tgaaggggca
      961 ttcccttcga tggaggatgg cgtccgcggc atgaaattta ttgagaccgc tgtggcctct
     1021 cacgccgatg gaaatgtttg gaaaacgcta tagatttaga aaacgatata aattaaaacc
     1081 atgaaaacga tcaaaggacc tgccgtattt ttagcccagt ttatggacga taaagcgccc
     1141 tttaatagcc ttgatggact atgccagtgg gcggcagatc tcggatataa aggcatacnn
     1201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1381 nnnnnnnnnn nnnnnnnnnn nnnnnngata taaaggcata caaattccga cttgggagtc
     1441 gagactcatc gatttaaccc tagcgggaca aagcaaagca tattgtgatg aactccaagg
     1501 caaaatcaga tcctacggcc ttgaaatcac agaactttcc acccatctac aagggcaact
     1561 cgtcgcggta catcctgcct atgacttgat gttcgataat tttgcnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncca gaggattgta aaaacaatcc
     1801 aaaaaagcgc accgagtggg ctagagccca gctcatttct gccgctaaag cgagtggtca
     1861 tctgggactt aaagcgcatg cgacttttag cggcgcgtta ctttggcaca cctggcaccc
     1921 ttggccacaa cgtcccgacg gacttgttga gcttggcttt gcggagctgg ccgaacgctg
     1981 gttacccctt ttgaatgaat ttcaagataa tggtgtggcg gtatgctacg aaattcaccc
     2041 cggtgaagac cttcatgacg gggtgacttt tgaacgcttt ttagaagcca cagggaatca
     2101 caaggcagtc aacatcctgt acgacccaag ccatttcgtc cttcaacaac tggattattt
     2161 aaagtatatc gaccattatc atgaattcat aaaggccttt cacgtaaagg atagcgagtt
     2221 taatcctgat ggaaagcggg gcgcattcgg aggctatggc gattggaagg atcgtgcggg
     2281 gcgttatcgc tctttgggcg acggacaaat cgactacaaa tccgtgttta gtaaactcac
     2341 agaatacggc tgcgatgttt gggcagtgat ggaatgnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnngat gtttgggcag tgatggaatg ggaatgcgtc atcaaaagcc cggaacaagg
     2521 agcgcgggaa ggagcaaggt tcattcaaga ccgaattatt gaagtcacaa cgaagcgatt
     2581 tgacgatttt gccggggcgg aaattgatca agaacgactc aaaaagattt tggggcttta
     2641 ataattccaa gagatggaat aatcccggtc gaggctgaca ggcaggaaat tactccggcg
     2701 ggcacattac ccgaaataaa gaacaataaa tacgaccaaa atgaccaaat taaatttcgc
     2761 aatcatcggc ctactcgccc tagccgcggc ctgtggccaa ggaccccagc agccagcagc
     2821 aacacccgta accccaacgc ctgaagaagt gacaaagcct gaggaaacag aagtttggac
     2881 cccggtccct aataaagtcg acccatttgg gcaaaacgga gcacctagtg atgccattgt
     2941 tttatttgac gggagcaatt tagaacgttg gatttctgca gcagaaagca ctgcagccca
     3001 atggaacatc aacaccgatg gaagcatgac cgtggcaaac ggcacgggag atattcaaac
     3061 taaagacaat tttggaagtg tccaactgca tgttgaatgg cgcagtagtc ctgaaaatac
     3121 ggccagtgga caggccaaaa gtaacagcgg tgtctacttg cagaaccgat atgaggttca
     3181 agtcttggac aataatgaca atccaactta cgtcaatgga atggtgggct cattatacaa
     3241 gcaatctccg ccactagtta tggcctcagt ccccacaggt tcctggaacg cttacgacat
     3301 catttatcac gctccagagt ttgacgccca aggcggtatg gttgtcgcgc ctaagataac
     3361 agtcttacaa aacggagttt taattcaaga tcactttgag ctacagggaa ctactgaata
     3421 tattggctgg ccaaaagtaa gcgctcatgg gcccggtcca ataaaattgc aggaccacaa
     3481 cgaccacagc ggtgtgtcct atcgcaatat ctgggtacgc ccattaaatt aattgactta
     3541 aatgaactct atgaaaactc tattatcgct ctcattaatt gtcgccttaa cggcatcttg
     3601 ccagaataat aacaaatctg acttatcaat gaccaaagag gacaccaccg ggcaaaccac
     3661 ccctcaagaa gagtggttaa ccttattcga cgggaccaat tttgatcaat ggcgcggcta
     3721 tctttctcag ggtatgccag aagcctggag tattcaagac agcgccatgg tttttacccc
     3781 agggggacaa ggcggtcaaa atataatcac caaggatgtt ttttacaact ttgagctgtc
     3841 tctagagtgg aatatcgccc ccggtgggaa tagtggtatt ttttggggcg taattgagga
     3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 ggggcgtaat tgaggacccc gcttatccag aaacttatca atccggtcct gaaattcaag
     4081 ttttagacaa tgccaagcac cccgatgctt ttgtcggcga gggcacacat actgccggag
     4141 ccctatacga tatgattgcc ccctcggcgg atttcacaaa tcctgcaggt tcatggaacc
     4201 attgcgtttt acgggtagac catagaatca acaaaggttt ggtattgatg aacggaaatc
     4261 aaattgtgga atttcctttg tacgggcccg aatgggccga catggtggcg caatctaaat
     4321 tcgcggactg gcctgttttt ggaaaatccc caaagggtca tattggactt caagaccatg
     4381 gggaccaagt cgcttatcgc aacgtgaaag ttaaacactt aatagattaa atattttagt
     4441 agattcaata ttaatgggtt agacgcagag tcgtatcacc tcgatttcca aaagattcac
     4501 acgaaatgaa tactgaaaat gaattatatc tgagcctcgg gtactgtgga tttatgctct
     4561 tgttgttctt gat
//
LOCUS       DPUP01000158            4576 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14430,
            whole genome shotgun sequence.
ACCESSION   DPUP01000158 DPUP01000000
VERSION     DPUP01000158.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4576)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4576)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4576
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..80
                     /locus_tag="DHV98_05665"
     CDS             <1..80
                     /locus_tag="DHV98_05665"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCK05844.1"
                     /translation="KYHGVNGVGAIEEIAQRLTQVFNLL"
     gene            90..>509
                     /locus_tag="DHV98_05670"
     CDS             90..>509
                     /locus_tag="DHV98_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HCK05845.1"
                     /translation="MTEGNFVDYIKVHIASGKGGQGSTHLRREKFVPKGGPDGGDGGR
                     GGHIIFQGNKNLWTLFHLKFKRHFSAGHGGSGGKQTSTGADGEDIIVEVPLGTVIKDS
                     ETGAVLKEITENQEKFIAAKGGKGGMGNAHFKSATNQT"
     assembly_gap    510..638
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <639..1203
                     /locus_tag="DHV98_05675"
     CDS             <639..1203
                     /locus_tag="DHV98_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008254532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HCK05846.1"
                     /translation="GEEKNLTLEMKILADVGLVGFPNAGKSTLLSVLSAAKPKIADYP
                     FTTLKPNLGIVGYRDYQSFVMADIPGIIEGAAEGKGLGHYFLRHIERNSILLFLIPAD
                     ADDLRKEYDILVDELRRYNPELLDKQSIVAISKADLLDQELKAEMTQVLDESFGDIPY
                     LFISSVAQQGLDALKDVLWNALNAPVR"
     gene            1254..>2565
                     /locus_tag="DHV98_05680"
     CDS             1254..>2565
                     /locus_tag="DHV98_05680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05847.1"
                     /translation="MKPFVIGLVFSVVAMTTSAQCPTEPLVLGSQDAIDNFSTNYPNC
                     THLSAPLYIDEVDGVINNLLGLSAVESAYLIKIQNTHIAQLNGLENLLSIQELWLNSN
                     YNLIDFAGLDLIANIDLLNVIDNTALESADGLGSLSQISQLNFFDNTSLTDLTALSQI
                     TQLNGLRIAGNNLTTLDGLSNLVSVEGEIFVSNEQVINLNVFSGLNNLTASLFLWNNP
                     VLTDVSVFQEVTQLQDLVIVGCNQIQGFQGFENLTQVAGIFRLGFNPQMTDLTAFGNL
                     STVGSLDIYENDNLLSLDGLEGLIEVTEAVYLMDNPNLMDIGALESINPQGLQQVVIS
                     RNTSLSTCDNDFVCQVIFDPEISEEIQANANGCNSVPQVAARCILEVPQAKPLPTLDL
                     WPSPANQGLNVLAGGAFIRALDVYNVQGELIDTVRYTADQTLSQA"
     assembly_gap    2566..2661
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2736..>3150
                     /locus_tag="DHV98_05685"
     CDS             2736..>3150
                     /locus_tag="DHV98_05685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05848.1"
                     /translation="MNKGSILFMAIILSWNFALGQQSMEKVLLNPEEIKTLIEQGKLR
                     EARAQILNMPRDFQLSAESMELSGDVFGGLKLWDSALVYYEKFKKLAPKNAASYFKYG
                     GALGMMALSKNKFSALMYLDDIEASFQKAVSVDPTY"
     assembly_gap    3151..3216
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3259..3786
                     /locus_tag="DHV98_05690"
     CDS             3259..3786
                     /locus_tag="DHV98_05690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05849.1"
                     /translation="MGGGSDRAMEQADELFKVSPVDGWMARARLAEDDEDFERAEQNY
                     IKANNEGQSLWTYKGIISFYERQERWDSGFEQLNRAMTKFDDLSLNYQWAKMSVLSEK
                     YLNEGINYIEQCLGEQVLVPGIPEQWIRLRYAQLLRKKGQYQPALDQVNKALALEARF
                     EQAKDEKATLMKLLK"
     gene            3854..>4576
                     /locus_tag="DHV98_05695"
     CDS             3854..>4576
                     /locus_tag="DHV98_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002987532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan synthetase"
                     /protein_id="HCK05850.1"
                     /translation="MRVHFIAIGGSAMHNLALALANKGATVTGSDDAIFEPSKSRLAA
                     KGLLPEQLGWDARRITSEIEAVILGMHAKEDNPELLRAQELGLTIYSYPEYLFAHSQD
                     KTRVVIGGSHGKTTITSMILHVLGYHNRPSDYMVGAQLEGFDTMVHLTEENEFMLMEG
                     DEYLSSPIDRRPKFHLYAPNIALISGIAWDHINVFPSFEDYQRQFSIFIDKIVPGGTL
                     VYNEEDPQVKELVENSIHPIKKI"
BASE COUNT         1220 a          823 c         1003 g         1239 t
ORIGIN      
        1 ataaatatca cggagttaat ggggtggggg ctatcgaaga aattgcccag cgcctgacac
       61 aagtctttaa cctcctataa acagccaata tgaccgaagg gaattttgtt gattatataa
      121 aagttcacat tgcttcgggc aaaggtggtc aaggaagcac gcatttgcgt cgcgaaaaat
      181 ttgtacccaa ggggggacca gatggaggag atggtggtcg aggcggtcat atcatttttc
      241 aaggcaacaa aaacctttgg accttatttc acctaaagtt taaacgccat tttagcgcgg
      301 gacatggggg ttcaggcggt aagcaaacca gcacgggtgc cgatggggaa gatatcattg
      361 tcgaagtgcc tctgggaacc gtaattaagg atagtgaaac aggagcggtt ttaaaagaga
      421 taacagaaaa tcaagagaag ttcatcgcgg ccaaaggagg caagggcggt atggggaacg
      481 cccattttaa atcggcaacc aatcagacgn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntg gagaagaaaa aaacctgacc
      661 cttgagatga aaattttggc tgatgtcggt ctggttggat ttccaaatgc aggtaagtca
      721 acgttgttgt ccgttctgtc cgcagccaaa ccaaaaattg cggactaccc atttaccacg
      781 ctcaaaccga atttgggtat tgtcggttat cgggattacc aatcttttgt catggcggac
      841 attccgggaa ttattgaggg tgccgctgag ggtaaaggct tgggccatta ttttttgcgc
      901 catattgagc gcaattctat tctcttattt ttgattcctg cagatgcgga cgacctgcgc
      961 aaagagtatg atattttagt tgacgagctg cgccgttata atcctgagtt attggataag
     1021 caaagcatcg ttgctatttc gaaggccgac cttctggacc aggagctaaa ggccgaaatg
     1081 actcaagttc tcgacgagag ttttggggac atcccttatt tgtttatctc atcagtagca
     1141 caacaaggat tagatgccct gaaagatgtc ctttggaacg ctttgaatgc tccggtgcgc
     1201 taatttagtt gttcattcga tttagatttt cattatcttg taacaaaaaa gttatgaagc
     1261 cttttgttat tgggctcgtg ttttctgtgg tagctatgac cacgagtgca caatgtccga
     1321 ctgaaccttt ggtgcttgga agccaagacg ccatagacaa tttttccacg aattatccaa
     1381 attgcaccca cttgtctgca cccctttata ttgatgaagt cgacggtgtt attaataatt
     1441 tattggggtt aagtgccgta gagagcgctt acctcattaa aattcaaaac acccatattg
     1501 cgcaattgaa cggcttggaa aatctcctat ctattcaaga gctctggttg aacagtaatt
     1561 ataatttaat tgattttgca ggtttagatt taatcgcaaa tatcgatttg ctcaatgtta
     1621 ttgacaatac agcccttgag tctgccgatg gtttgggatc attatctcaa ataagtcaac
     1681 taaacttttt tgataacacc agtctgacgg atcttacagc tttatcacaa attactcagc
     1741 ttaatggcct gcgtatcgcc ggaaataatt taacgactct tgacggcttg agtaatttag
     1801 tttccgttga gggggaaatt tttgtgtcca atgagcaggt gatcaaccta aacgtttttt
     1861 ctggattgaa taatttaacg gcatcacttt ttctatggaa caaccccgta cttaccgatg
     1921 tttccgtttt tcaagaggta acgcagcttc aagatttagt tatcgtaggg tgtaatcaaa
     1981 tccaaggatt ccaggggttt gaaaatctca cacaagtagc gggaattttt cgtttaggct
     2041 ttaatccgca aatgacagat ctaacagctt ttggaaattt aagtaccgtg ggttctttgg
     2101 acatttacga aaatgacaac cttttaagtc ttgatggatt ggaagggctc atcgaagtta
     2161 cagaggctgt ttatttaatg gataatccaa atttaatgga tattggcgcc cttgaaagta
     2221 taaatccaca gggattacaa caggttgtta tttcgcgaaa tacaagtctt tccacttgcg
     2281 ataatgattt cgtgtgtcaa gtgatttttg acccagagat cagtgaagaa atccaagcca
     2341 acgccaatgg gtgtaattct gtgcctcaag ttgcagcgcg atgcattttg gaagtaccac
     2401 aagccaagcc acttcccact ctagatttgt ggccgagtcc ggcaaatcaa ggcctgaatg
     2461 ttttagcagg cggcgctttt attagggcct tagacgttta taatgtacaa ggtgaattaa
     2521 ttgatacggt acgttatact gccgatcaga ccttgtctca ggccgnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn ngcttcgggt ttgtatttta tttcgattaa tactgatcgc
     2701 ggtttggtgc acagtaaatt tataaagcgt taattatgaa taaaggatct attcttttta
     2761 tggccataat tctttcgtgg aattttgcat tgggtcaaca atccatggaa aaggttttgc
     2821 ttaacccaga agaaataaaa accttaatcg agcaaggtaa attgcgcgaa gcgcgtgctc
     2881 aaattcttaa tatgcctcgt gattttcagt tgagtgctga gtctatggag cttagcggag
     2941 acgtatttgg agggctcaaa ctatgggatt ctgccctggt ctattatgaa aagtttaaaa
     3001 agttagcgcc aaaaaatgct gcaagctatt ttaaatatgg cggtgccctt ggcatgatgg
     3061 ccctttcaaa aaataagttt tcggcactca tgtatctcga tgacattgag gcgagctttc
     3121 aaaaggccgt ttcagtcgat ccgacctacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncact gggcgcttat cgaatattat
     3241 ttgcaagtgc caagcattat gggtggtggt tcagatcgag ctatggagca agcggacgaa
     3301 ctattcaaag tttcgccagt tgatggttgg atggcacgag cgcggcttgc tgaggatgat
     3361 gaggattttg agcgtgctga gcaaaattat attaaggcca ataacgaagg acaatctctt
     3421 tggacctata aaggaataat cagtttttat gagcgacaag agcgctggga ttcgggattt
     3481 gaacaactca atagggccat gacgaaattt gatgatctaa gcttaaatta ccaatgggca
     3541 aaaatgtctg tgctgagcga aaagtacctg aatgagggga taaactatat tgaacaatgc
     3601 ttgggagaac aagtgcttgt tccgggaata cctgagcagt ggatcagact gagatatgct
     3661 caattactgc gtaaaaaagg tcaatatcag cctgcattgg atcaagtcaa taaggcgctg
     3721 gctttagagg cgcgttttga gcaagcaaaa gacgagaaag ccactttaat gaaattatta
     3781 aagtaatggg atcaaagcgt cttcagggcc ttttgtatct ttagccttta gttcatccta
     3841 aaaagtattt ttcatgcggg tacattttat tgccataggg ggaagcgcta tgcacaattt
     3901 agccctggcc ctggccaata aaggggcaac agtcacgggg agtgatgatg ctatttttga
     3961 accgtctaaa agtcgcttgg ctgctaaagg acttctgccc gagcaattgg gttgggatgc
     4021 ccgtcgcatt acctctgaga tcgaggcggt catcctaggg atgcatgcaa aagaagataa
     4081 tccagagtta ttgcgtgctc aggaattagg actaaccatt tattcctacc cagaatattt
     4141 atttgcccac agtcaggaca aaacaagagt ggttatcggc ggctctcacg gtaaaacgac
     4201 cattacgtca atgattttgc atgtgctggg ctatcacaat cgcccctccg actatatggt
     4261 cggcgctcaa ttggagggct tcgataccat ggtgcatctt acagaagaaa acgaatttat
     4321 gcttatggaa ggcgatgaat atttatcttc acctatagat cgtaggccta agtttcacct
     4381 ctacgccccc aatattgccc taattagtgg tattgcctgg gatcacatta atgtctttcc
     4441 cagcttcgag gattaccaaa gacagttttc catttttatt gataaaatcg ttccgggagg
     4501 gactctcgtt tataatgagg aggaccctca ggttaaagaa ttggttgaaa attcaatcca
     4561 ccccattaaa aaaata
//
LOCUS       DPUP01000159           25478 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5531,
            whole genome shotgun sequence.
ACCESSION   DPUP01000159 DPUP01000000
VERSION     DPUP01000159.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 25478)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 25478)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25478
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..404)
                     /locus_tag="DHV98_05700"
     CDS             complement(<1..404)
                     /locus_tag="DHV98_05700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05851.1"
                     /translation="MRVIALSIYPYLCFALFFTLPFDDYFRALPNILLIALAAMFPFV
                     FDTAELKNIVRSTWSWVLVFLGFVVIQAWVLGRFSQDFVVIQKMLLAGALSLLLYPVR
                     DNRTLMHGVIYSSVAAAIYSLVRLVILLNQGA"
     gene            complement(542..1405)
                     /locus_tag="DHV98_05705"
     CDS             complement(542..1405)
                     /locus_tag="DHV98_05705"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00534.18,HMM:PF13439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HCK05852.1"
                     /translation="MRREAADYTHFQYISPLWCPTPTLVTIHDLLFLEPEFKAHFPWT
                     YRWLNGLLFRLSAQKAKILCTVSAYGQNQLSRRYGIDSQKIVITPNAVSAQQMSLDKA
                     KKRVSGYALDRFILFVSRVEPRKNHKALWRAFETLALHKQGFKLVFIGKKEWMDPDLE
                     AVMQQSDPSLLEAVIWLDSVPHEDLWAFYRAAALFVYPSLGEGFGIPPLEAAAVGTPV
                     VCARNTAMVDFEFFPYLVDLNQPESLEKAMNAALNDPEYPAQQIAEAIQNQYNWSASA
                     KSLAQAIEQSN"
     assembly_gap    1407..1476
                     /estimated_length=70
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1477..1721)
                     /locus_tag="DHV98_05710"
     CDS             complement(<1477..1721)
                     /locus_tag="DHV98_05710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05853.1"
                     /translation="MKILIDAHKIGEKHEGTSTHLIGLYRALMGLKPDWVFVFVGPFK
                     AAMQEAFGTGDNCQYITLSTPNKFRRLLWDLPQLMRR"
     gene            complement(1721..>2172)
                     /locus_tag="DHV98_05715"
     CDS             complement(1721..>2172)
                     /locus_tag="DHV98_05715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05854.1"
                     /translation="VFFTRVFVEQLSEDQAWLTGYGINAGQAKIAQGQNRYFVYCGYN
                     TYNLHNQYWQTIFELGLIGGVLLVVMLLQLARAGVKRRDWFQLGLALLMVALMVTETY
                     LWRQRGLIHFMILYLALTAAVNLNSEPLQIQSLSRRAKTNKPPQITP"
     assembly_gap    2173..2252
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2253..>2561)
                     /locus_tag="DHV98_05720"
     CDS             complement(<2253..>2561)
                     /locus_tag="DHV98_05720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05855.1"
                     /translation="ATYVLFFWLVYAPEKGRSRRALILGGIHLGFLILLSSKNIILTT
                     LLIGFVAKAYTHRKRLKRLILIAVVGVAAVVALSQTPWGARWAQQQSTPIADAWRSEE
                     "
     assembly_gap    2562..2620
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2621..3106)
                     /locus_tag="DHV98_05725"
     CDS             complement(<2621..3106)
                     /locus_tag="DHV98_05725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05856.1"
                     /translation="MSRSLSHSTQNEIMSWAIGLVLISVPMPYTFSSIALAVIGAVAL
                     MGMGHRQIHWRPSYLWPMLLFGLIVLSLFWTQDLGKSLRGIGRQLPLLVMPLSFLFWP
                     KFDQKVWHKGVFIGGLAGALLALFAVARAALRSVGQGDYSPFFYHELVDFWELNAIYV
                     SA"
     gene            complement(3090..>3692)
                     /locus_tag="DHV98_05730"
     CDS             complement(3090..>3692)
                     /locus_tag="DHV98_05730"
                     /inference="COORDINATES: protein motif:HMM:PF13692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HCK05857.1"
                     /translation="YIPYGAEIFEKPDAKVLGQYSVSAGTYDLVVARMEPENNIETIL
                     DGVAKSQNQRLCLVVGKHEATPFGRYLAKKYENQANIRFLGGIYNQELLDNLRHHARL
                     YFHGHSVGGTNPSLLEAMGSQVFIVAHDNAFNKAILGPDALYFRDADQVCQILDQDNE
                     PLKVQEMIHANTQKIRTLYSWDKINAAYLTFLKSIYEQKP"
     assembly_gap    3693..3815
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3816..4338)
                     /locus_tag="DHV98_05735"
     CDS             complement(<3816..4338)
                     /locus_tag="DHV98_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020214948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 1 protein"
                     /protein_id="HCK05858.1"
                     /translation="MKIAIFGTRGIPNHHGGFEQFAEWFAPYLADRGHEVYVYCSHNH
                     PYQQKDFGGARLVHCYDPEYKLGTAGQFIYDLNCLLDARKRNFDILLQLGYTSSSVWY
                     PLLPKKTLIATNMDGLEWKRSKYHPLVRRFLAKAEAWAVKSSDYLISDNTAIEAYLKD
                     TYGVRSTYIPYGAE"
     assembly_gap    4432..4632
                     /estimated_length=201
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4633..5763)
                     /locus_tag="DHV98_05740"
     CDS             complement(<4633..5763)
                     /locus_tag="DHV98_05740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05859.1"
                     /translation="MNQLTAKIGLVAIIIALWAESVELSFVVALAVLLLHFNGRMSKG
                     LSQIVLLILAMMAVGSLGIFTRQAGVYGFVKDLVYFLRPLTVMLATYYAVQKLRSKAD
                     FYNLIVLVGFGFALLHLLDIGIGLLRYRPNLQKFRELFGKLNHVEMVALFLVACIRDL
                     PIKKTRFTLFYKIAVAALIFSFLLYFSRTMIVVLLLMIMAYYGYLKLNAKGVVMGLAL
                     LGFGAGFAFFLSQYEPEEQKNQTVLTGFLAKVKNSYTETFEPIKFDTYLKDRRSLWPR
                     WRAYEASLVLNEVDQERKWLQGKGFGSTVDAGFELRLNGEMIQHLPTVHNGVAYVYMK
                     TGVLGLLLYFTIFIVLYLYNYLNPKDQAHKSYNGVLVAAGFYM"
     gene            complement(5760..6455)
                     /locus_tag="DHV98_05745"
     CDS             complement(5760..6455)
                     /locus_tag="DHV98_05745"
                     /inference="COORDINATES: protein motif:HMM:PF03567.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05860.1"
                     /translation="MISHKHKTVFVHIPKVAGQSVEQMYLADLGLNWSERAVLLLRPK
                     LNTEKGPERLAHLTAAQYTQFGYLSQDNFQNYFKWALVRDPYQRALSCYHFLGYARVL
                     SFENFVQNVLPEKIKQQHFFFLPQYDYLHDNQGQLLVDYVGHLERLDQELVYPKEKTG
                     IQGISMPHANKAAGSWKRVVRIWGEQPSLIKYFALGHDRKSRKEVLTPRAKAGLNQLY
                     AKDFEAFGYTQQE"
     gene            complement(6452..7393)
                     /locus_tag="DHV98_05750"
     CDS             complement(6452..7393)
                     /locus_tag="DHV98_05750"
                     /inference="COORDINATES: protein motif:HMM:PF00685.25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05861.1"
                     /translation="MFNVVGQECKVDFFVVGAARSGTTTLYQYLSKHPDIYVPRVKEL
                     NYFSKVSSSQPQDYALPKPEQEYHTKIIQSPEVYRALFSQAKPSQIKGDISPSYLWHE
                     ETAAAIKAHNPKAKIVISLRHPVERAFSHYLMAKSVGYDQSKNFQQAIHAPLSGHWGG
                     GNRYMEWSDYIGPLKAYYAAFPKAQIHVMIFEQWVQGQEKAFADLAEFLSVDHYKLER
                     ATDQHNQTLAYKHQGTLNALRTPWARTLLHSVMGESSRDRVKAFLFGGRPSEEKLPEQ
                     LSAQLLGQNIESLRQIEELTQKPVLDLWGVNKIIAQK"
     gene            complement(7378..>7818)
                     /locus_tag="DHV98_05755"
     CDS             complement(7378..>7818)
                     /locus_tag="DHV98_05755"
                     /inference="COORDINATES: protein motif:HMM:PF14667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HCK05862.1"
                     /translation="TKIAEDYNRGALEALALKVKKSTRLIFFSTAPAILILALGAEWI
                     LSWFGAAYTGAKSALLILLLGQAVNAFCGSVGVYLNMTGKQKAFQWIVASALVLNIAL
                     NAYLIPIYGMNGAAWATAASMMAWNFTAVLYVYKTDRIKTFLTW"
     assembly_gap    7819..7889
                     /estimated_length=71
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7890..8762)
                     /locus_tag="DHV98_05760"
     CDS             complement(<7890..8762)
                     /locus_tag="DHV98_05760"
                     /inference="COORDINATES: protein motif:HMM:PF01943.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05863.1"
                     /translation="MNLLSGKVNINSITGRSIGVLSLRLLGVGLFFLGTLYLTNELSP
                     DLVGQYDYSRALLLFVGAIALFGMQQSVIFYSGLYSAQNNLGQIRQVYRSMILLVVAL
                     SVGLNGLLYALDPIVSALGAKPIGDLVYQTFTGLLFYAIAMINIDVLRAIDRIYVSEL
                     FRNILRYLIFFVGVVALVVLGQPQWLVHVFLGSFVFLALSSTALLLYYFSQPPLNVFQ
                     PSAPISTKEILRRSAPMAISAASFLLMQSLDVLMLKQFDNYAVVAVYSVAVKLTLLLS
                     VALASVNAVLAPKIV"
     gene            complement(8788..9765)
                     /locus_tag="DHV98_05765"
     CDS             complement(8788..9765)
                     /locus_tag="DHV98_05765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05864.1"
                     /translation="MEKHTEEVDLFYVLKKLKNVYLGWLARGYHAVQFLKKYWIALAI
                     MIVGGHFAGKFWQQSQRPKRQAVMIVQNNFGSSSYVYDAVEILNIKCKQIDEQFLKEV
                     GLNPETPEILEILIEPVVSVNDLLKVSEPNDRNIDTYISRIETEEDLMVSEIFYPQYH
                     YHKITVTTNTPNAKVLDKILAYLNSNDNFNTIKEVVVAETDLRIERNNKTIELIDALF
                     AEYSGKNEAEAIMTNDLNIPTIRINNTNLHQLVEKKTELIEENKELMAERTKYGSVVA
                     VVNSPRLVMTADFFDKKGTLIPLGLVVLFFGFFWLKGLYLKGKKHASAA"
     gene            complement(9774..10307)
                     /locus_tag="DHV98_05770"
     CDS             complement(9774..10307)
                     /locus_tag="DHV98_05770"
                     /inference="COORDINATES: protein motif:HMM:PF04321.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05865.1"
                     /translation="MFNGKANQPYLEAHPTAPLGIYGQSKLQGEQAVEEINPAHYIVR
                     ASWLYGPYGHNFLKTMLKLADQGKSLTITTEQTGSPTSTLDLADALLGLLEKQAPYGT
                     YHFSNRGQTTWYGFAKEIFKQTHQLEGVKLAETAEYPTFAKRPKYSVLDINKIEQTLQ
                     QPIRSWQEALAEVIHQI"
     assembly_gap    10333..10424
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10425..10627)
                     /locus_tag="DHV98_05775"
     CDS             complement(<10425..10627)
                     /locus_tag="DHV98_05775"
                     /inference="COORDINATES: protein motif:HMM:PF04321.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCK05866.1"
                     /translation="MKNILVTGASGQLGQSLRQRCLAFSELTLQFYTRQDFDLEQPDQ
                     MSRVLDEQKPSVVLNTAAYTAVDT"
     gene            complement(10624..11169)
                     /gene="rfbC"
                     /locus_tag="DHV98_05780"
     CDS             complement(10624..11169)
                     /gene="rfbC"
                     /locus_tag="DHV98_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HCK05867.1"
                     /translation="MERIDTALKGAFCLIPPQFEDARGLFSETYNAETFRQVTGLEVN
                     FVQDNQSISKFGVLRGLHFQSGAYAQAKLVRVSAGKVLDVIVDLRKDSPTFGQHYSIE
                     LSAENRIQLFVPKGFAHGFITLSPEATFCYKCDAFYNKEAEGGILYNDATLAIDWHLK
                     HGDVLVSEKDQILPTFLDATA"
     gene            complement(11171..>11427)
                     /locus_tag="DHV98_05785"
     CDS             complement(11171..>11427)
                     /locus_tag="DHV98_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013305838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HCK05868.1"
                     /translation="AYLAMGELSVSVLDRGTAWLDTGTFSSLMQASQFVQVIEARQGL
                     KIGAIEKAAYRMGYIDQAQLRKLAKPLLKSGYGKHLMQLD"
     assembly_gap    11428..11555
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<11556..12167)
                     /locus_tag="DHV98_05790"
     CDS             complement(<11556..12167)
                     /locus_tag="DHV98_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HCK05869.1"
                     /translation="MKGIILAGGSGTRLHPLTLAVSKQLMPVYDKPMIYYPLTTLMYA
                     GIREILIISTPEDLPLFKKLLGDGTQLGCAFSYAAQPEPNGLAEAFIIGEDFIGKDKV
                     ALILGDNIFYGTGLSELMQAQNDPTGGVVFAYHVQDPERYGVVEFDAQGNALSIEEKP
                     TKPKSNFAVPGIYFYDNRVVEIAKSIAPSERGELEITAVNNAYL"
     gene            complement(12245..13258)
                     /gene="rfbB"
                     /locus_tag="DHV98_05795"
     CDS             complement(12245..13258)
                     /gene="rfbB"
                     /locus_tag="DHV98_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003443303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HCK05870.1"
                     /translation="MLVTGAAGFIGSNYVNHFVPLSEANWVVLDKLTYAGSLDNLKTL
                     EGLKNYTFVQGDICDKNLLKQLFEEHQFDTVVHFAAESHVDNSITGPRAFVETNLLGS
                     FELLHAAYEHWMEGPNAIKNQFAHARFLHVSTDEVYGTLGETGLFCEDTPYAPNSPYS
                     ASKAGSDMLARSYFHTYGFPVVTTNCSNNYGPNQHWEKLIPTIIRKAISGQDIPIYGD
                     GQNIRDWLYVLDHCKGIQKALDQGTLGETYNIGGRNERNNLYIAERICAALDELRPKP
                     HGAYKDQITFVRDRPGHDFRYAIDATKIEQNLGWKAEETFETGIVKTIEWYLAHPERL
                     SQE"
     assembly_gap    13286..13406
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<13407..>13591)
                     /locus_tag="DHV98_05800"
     CDS             complement(<13407..>13591)
                     /locus_tag="DHV98_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05871.1"
                     /translation="KAIQAASKIRGSINASVAVRYAYYASDNPLESGSTLASGGLGTT
                     GVRPTYVITEKIIEQIT"
     assembly_gap    13592..13738
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<13739..15236)
                     /locus_tag="DHV98_05805"
     CDS             complement(<13739..15236)
                     /locus_tag="DHV98_05805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05872.1"
                     /translation="MSQQLGHTRTRAQESSNAIERVYITMRHLFNRGFYKPMGISGTA
                     LREALLTLRPEIYGSIAEEKIELQGMVYIMDRLPYGIEQCQFISLTSDEGYNKSHIPA
                     IIPPKRRRHCYRIDEQQMNIVITRGRSEIYDILTHLTFMYIESHKIMKQVLVSKEEGW
                     ILSRDWQKFAETATQKEEITQSQRELALMHAASFLGRTYEEVQLSYPLFAQKQDPDHF
                     IRLIYHLGQGAIDEVIDKTKARQISFSPVLRERLGHHIHGERWAKRIKETLTQMGATE
                     RPTHVISANMHSVMNTLYAAKALPKEAAKKSSLALYEYLSQDTNKSARQKVKEFAEKN
                     GMTYLDDQSQANIDVQIIDLAKALPSRYNNPNANAPILIVMDYAFGEQAYETMDELLK
                     PFNFSGTTKFMPVVSISIMGKAGILEGGKGDIMIPRAHIFEGTADNYPFKNKLKLKDF
                     EGHNAFSGTMITVLGTSLQNKDILNFFHNSSWDVIGLEMEGAHYQKAIQ"
     gene            complement(15255..16754)
                     /locus_tag="DHV98_05810"
     CDS             complement(15255..16754)
                     /locus_tag="DHV98_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013998186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05873.1"
                     /translation="MGIKAFFAKRLAAIAARKIERWAKDPIKTQQKVFAALIQGAKGT
                     KFGADHNFSQIHTHQDFVAQVPIRDYEALRPYVDQMVAGASDVLWPGKPFYYAKTSGT
                     TSGAKYIPITKASMPHHIENAKNALLLYIHQTKNAGFVSRKMIFLQGSPVMSEKNGVQ
                     LGRLSGIVAHYVPSYLQRNRMPSWAVNCIEDWETKVEAIVHETKKEDMALISGIPSWV
                     QMYFEKLIKTTGKPVGELFPNFNLFVYGGVNFEPYRQKFEQLIGRRTDSIELYPASEG
                     FFAFQDRQEDTGLLLQLDSGIFYEFVKTTEFFDPSPRRHTLETVELGVDYVMIISTNA
                     GLWGYNIGDTVQFTSLKPYRIRVSGRLKHFISAFGEHVIGKEVEESMTHALQQCGGSI
                     TEFTVAPQITPEGQELPYHEWFVEFERLPSDLTAFAQALDQKLQEQNVYYADLIQGKV
                     LQPLKITQVSGGGFNAVMKSLGRFGGQNKVPRLANDRALAEPLSQWAHN"
     gene            complement(16754..17620)
                     /locus_tag="DHV98_05815"
     CDS             complement(16754..17620)
                     /locus_tag="DHV98_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HCK05874.1"
                     /translation="MARKTSGKKSFRKRLVHKYRLLVLNEDTFEERFSFRLNRLNVFV
                     ITVFSALGLILGTTLLIALTPLREYIPGYASTKLIKQAASLSELTDSLQQRLAANDTY
                     LQSIREVLTGNLKPSALNKDSIIEAVAREVDAQLLAASKEDSLLRERVQQEDKYNPLS
                     DESGQDFVLFPPVSGVITGTYDPEEKHFAIDVATVKNTPVKATADGTVILAEWNADTG
                     YVVVLRHKDNLISVYKHNASLSVAQGDLVKSGEVIAASGNTGALTTGPHLHFELWSDG
                     YPINPTNFIDFN"
     gene            17726..17911
                     /locus_tag="DHV98_05820"
     CDS             17726..17911
                     /locus_tag="DHV98_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HCK05875.1"
                     /translation="MTAQILPLVIGAPQIILIVVVVLLLFGGKKIPELMRGLGSGIKE
                     FKDASKEDKSEQSEDGK"
     gene            complement(18039..19031)
                     /locus_tag="DHV98_05825"
     CDS             complement(18039..19031)
                     /locus_tag="DHV98_05825"
                     /inference="COORDINATES: protein motif:HMM:PF16125.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4837 domain-containing protein"
                     /protein_id="HCK05876.1"
                     /translation="MKKLIALFAMTLVLACGQNSTTDRSYLPESVGSINALNVVAPPE
                     IWSSAVGDSIRSWFAAPTPGLPQMEPLFSLSHLAPEHFTDFARSSRLILSLSLGDQDT
                     SSLKTNAFARPQLMAVAQGRSEESLIALVQAQQTQWIAQMKAFELKERQRRTQISPKV
                     PEGLAQDFGIEFQMPSAYRIAASSKDYYWLRKDLVSNGTTNILIYTAPLSMIPSQAEY
                     PGQYIRHIRDAIGARLLPVEDDSRFITDTTYVPEVSMEFIQGRETIVSRGIWTLSDAF
                     MGGPYLNMAIKDTVNEHYLIVEGFSYAPSMGKRDLQFELESIMRTINFVATPDK"
     gene            complement(19028..>19729)
                     /locus_tag="DHV98_05830"
     CDS             complement(19028..>19729)
                     /locus_tag="DHV98_05830"
                     /inference="COORDINATES: protein motif:HMM:PF01476.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase"
                     /protein_id="HCK05877.1"
                     /translation="LPAFYATMYIFEYASAYGLTPTNTQPHYVTTDTIQINQTIALSH
                     VAALSQTPLETLEFLNPEYTLGVIPYIEDRPYYLRMPVSDLGLLVENQDSLYGLARAD
                     FAQREKPLPELVDQNNRIRYRVKSGDYLGKIANKYGVSVAQIKRWNGLKSTQLRIGQR
                     LTIIPKRIPVNETTASSRTKNNNKDVYVVQRGDSLWGIAQKLPGITLEDLKKWNDISG
                     SEIKPGMALSLKPRS"
     assembly_gap    19730..19757
                     /estimated_length=28
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<19758..20633)
                     /locus_tag="DHV98_05835"
     CDS             complement(<19758..20633)
                     /locus_tag="DHV98_05835"
                     /inference="COORDINATES: protein motif:HMM:PF01464.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase"
                     /protein_id="HCK05878.1"
                     /translation="MIKSMGSLNKNRIITLYVFCALPFLMFGQNEPLTSPESKASTST
                     TQISIAEQDKEADLAGANPQDSLSPGLRNNPKAAEIERAWYALLRDTYRFEEQQQAIS
                     AQWDSIPLHDSLWSTETFKSRLAALDQKTPFHITYNSSLEQIVRNYLKNRRPQLQRLM
                     GLSHYYFPMFEEVFAQHALPLEMKYLAIVESALVPTATSRVGARGLWQFMFQTGKMFD
                     LKVNSYVDERCNPLKSTIAAAEYLNQLYDILDDWDLALAAYNSGPGNVSKAIRRSGGR
                     KNYWNIRSFLPRETAG"
     gene            complement(20637..21885)
                     /gene="pgk"
                     /locus_tag="DHV98_05840"
                     /pseudo
     CDS             complement(20637..21885)
                     /gene="pgk"
                     /locus_tag="DHV98_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012023063.1"
                     /note="Converts 3-phospho-D-glycerate to
                     3-phospho-D-glyceroyl phosphate during the glycolysis
                     pathway; frameshifted; too many ambiguous residues;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
     assembly_gap    20927..21001
                     /estimated_length=75
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            21959..23110
                     /locus_tag="DHV98_05845"
     CDS             21959..23110
                     /locus_tag="DHV98_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009782003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HCK05879.1"
                     /translation="MEYAQIIGLNHLKNHLHTSAAHGRVAHAQLFSGPTGSGLLPLAL
                     AYAKTLLCAGLDPEGSSYQRAAHQVDSLVHPDLHFMYPVNSTDSVKKSPSVLDFLPQW
                     RSFVQNSPYGSLMAWYQHIGLGGKQGSISVSDTEQMTRTLALKSYEGGFKIMIIWMAE
                     KMNSESSNKILKLLEEPPAKTVFLLLTEEEDKILKTIYSRCQLLSLPLLSQNDLAQAL
                     TQHHGLTQHQAQSIAKTAHGDYYKAQQLIDAQGEEPLFEQWFLQWARGAFKAKGNKKA
                     IQELLSWSDHMAGLGRETQKSFLTYCSGLIRQAFLTHYKTRSLVYYNEYHEDFDLAKL
                     APFIHQNNIWQIQGALQEAEEHIERNGNAKIIFTDLAVQLTRLLHQSAD"
     gene            complement(23249..24100)
                     /locus_tag="DHV98_05850"
     CDS             complement(23249..24100)
                     /locus_tag="DHV98_05850"
                     /inference="COORDINATES: protein motif:HMM:PF13489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCK05880.1"
                     /translation="MTKTSAIESHVPKAVTDYMVTAESFSLVWNQEYKAYQTTPRPKE
                     LAPYYNHPDYISHNEKTTGLMAQAYRLVRNWNRRIKLKWLNKANPPGKKLLDYGSGTG
                     DFLKAANNASWDGEGIEVNELARSAVSNKGLKIFKAQSQMGRQRYDVITLWHVLEHLD
                     DPGEMAKWLSQHLSERGVLIVAVPNLKSWDAKFYRHHWAAYDVPRHLWHFSRESMHAL
                     FNQDFELTQTRPMWFDAVYVSLLSERYKENHGFLLRGIFIGIWSNFCALISKEPSSLA
                     YVLKKRN"
     gene            complement(24129..>25478)
                     /gene="gidA"
                     /locus_tag="DHV98_05855"
     CDS             complement(24129..>25478)
                     /gene="gidA"
                     /locus_tag="DHV98_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HCK05881.1"
                     /translation="GERAATGITEVLVDLGFETGRMKTGTPPRVDGRSLDFSKMVEQP
                     GDEDPQKFSFSDQTKPLAQQRSCHMSYTSLTVHELLREGFDRSPMFNGAIKSTGPRYC
                     PSIEDKIHRFADKDRHQLFVEPEGWNTVEYYINGFSTSLPEDVQLRALRACAGFEQVK
                     MFRPGYAIEYDYFPPTQLSHSLETKIVSGLFFAGQINGTTGYEEAGAQGLMAGINAAL
                     LCREQEPFILRRDEAYIGVLIDDLITKGTKEPYRMFTSRAEFRTLLRQDNADYRLTPK
                     GHDLGLASEARMKRMEQKYASSASFIEFFKTTSVLPEEINPILDRHDSSLAPQSDKLF
                     KFFSRPNISMQDMFDVKAVADYVDAHQLDVEVLEQVEIQVKYSGYIEKEKNNAEKLTR
                     LEGIKIPKNFDYSKLKSLSFEAREKLSSIQPATISQASRISGVSPNDISVLLVFMGR"
BASE COUNT         6434 a         5789 c         5406 g         6654 t
ORIGIN      
        1 ctcgcgcctt gattgagtaa aatcaccagg cgcaccaaag aataaatcgc ggccgccacc
       61 gaagaataaa tgaccccgtg cattagggtt ctattgtccc ggacgggata aaggagcagg
      121 gataaggccc ccgccaacag cattttttga attaccacaa agtcttggct aaaacggccc
      181 aaaacccagg cctgaatcac gacaaatccc aaaaacacca ggacccaaga ccaggtgctg
      241 cgcacaatat ttttcagctc cgctgtgtcg aatacaaagg gaaacatcgc cgccaaggca
      301 atcaacaata tattaggtag cgccctaaaa taatcgtcaa aaggcagggt aaagaatagc
      361 gcgaaacaca aataaggata tatggaaagg gcaataacgc gcatgcttga tttttaaagg
      421 cttaatttaa gcattaatgt ttagtttctc gccaaatgca ctagggggct ttgggttatt
      481 aaatggttta cacagtgttt tgcctattat cgttccaggg tgcgtcattt gctgtactat
      541 tttaattgct ttgctcaatg gcttgcgcta gcgatttagc tgaagcactc cagttgtatt
      601 gattttgaat ggcttcggca atttgttggg ccggatattc tgggtcattt agtgctgcgt
      661 tcatcgcttt ttcaagagac tctggctgat ttagatcgac cagataaggg aaaaattcaa
      721 aatcgaccat agccgtattt cgggcacaaa ccactggtgt gcccactgcc gccgcctcaa
      781 ggggtgggat tccaaaacct tcgcccaatg aggggtatac aaaaagcgcg gccgcccgat
      841 aaaatgccca aagatcttca tgaggcacgc tgtccagcca aatcacagcc tccagtaggg
      901 atggatccga ttgctgcatg acggcctcaa gatctgggtc catccattct tttttgccaa
      961 taaacacgag tttaaatcct tgcttgtgca aggccagagt ttcaaaagcg cgccagagtg
     1021 ctttgtggtt ttttcgcggt tctacacgac ttacaaacag gataaaccgg tccaacgcat
     1081 aacccgaaac gcgctttttg gccttatcta agctcatttg ttgtgcgctt accgcgttcg
     1141 gggtgatcac gattttctgc gaatcaatac cgtagcggcg actcagttgg ttttgaccat
     1201 aagccgaaac ggtgcaaagt atttttgcct tttgagcgct gagtcgaaac aataatccgt
     1261 tcagccatcg ataagtccat ggaaaatgcg ctttgaattc tggctccaaa aacaacaaat
     1321 cgtgtatggt cactaaagtg ggtgtaggac accacaaagg gctgatgtat tggaaatggg
     1381 tgtaatccgc agcctctcgg cgcatgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnntctc ggcgcatgag ttgaggcagg
     1501 tcccaaagca gacgcctgaa tttattcggc gtggacaagg tgatatactg gcagttgtcc
     1561 cctgtgccaa aggcttcttg catggctgct ttgaaaggcc ctacaaaaac aaagacccag
     1621 tctggcttta agcccatcag agcacgatac agcccgatca ggtgggtgct ggtcccttcg
     1681 tgcttctctc cgattttatg cgcgtctatt agaattttca tcagggcgtg atttggggcg
     1741 gtttatttgt tttcgctcgt ctggagaggc tctgaatttg gagcggttct gaattaagat
     1801 taaccgcagc cgtcaaggcc aagtataaga tcataaaatg aatcagcccg cgctggcgcc
     1861 aaaggtaggt ttctgtaacc atcagcgcaa ccattaatag ggccaacccg agttgaaacc
     1921 aatcgcggcg cttcacgcca gcgcgggcaa gttgcaacag catcaccaca agcaacaccc
     1981 cgccgatcag ccccaattca aaaatggttt gccaatattg attgtgcagg ttgtaggtat
     2041 tgtagccaca gtaaacaaaa taccggtttt gaccctgggc aattttcgcc tgaccggcat
     2101 taatcccata accggtgagc caggcctgat cttcgcttaa ttgctccaca aagacccggg
     2161 taaaaaacac ccnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngctcttcc gatctccacg catcggcaat
     2281 cggggtagac tgttgctgtg cccatcgcgc cccccacggg gtttgagata aggcgaccac
     2341 cgcagcaaca ccaaccacag caattaaaat caagcgtttg aggcgcttgc gatgggtgta
     2401 agccttggcg acaaagccaa tgagcaaagt ggtcaaaatg atgttttttg acgaaaggag
     2461 tattaaaaat cccagatgga ttccgccaag gattagcgcg cgcctactgc ggcctttttc
     2521 gggagcgtac accagccaaa aaaacagcac ataggtggcc gnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn agccgaaaca tatatggcgt
     2641 taagttccca gaaatctact aattcgtggt aaaaaaacgg ggagtaatcc ccttgaccca
     2701 cagaccgcag tgcggcgcgc gccacagcga acagcgccaa caaagccccc gcaaggcccc
     2761 caataaatac ccctttatgc caaacctttt ggtcaaactt tggccaaaat aaaaaagaca
     2821 ggggcataac caataagggc aattgacgcc cgataccgcg caaagatttg cctaaatctt
     2881 gggtccaaaa aagcgaaagt acaatgagcc caaaaagaag catgggccac aaataggaag
     2941 gacgccaatg gatttgtcgg tgccccatgc ccataagcgc aacagcccct ataacggcca
     3001 aagcaatgga gctaaaggta taaggcatag gcacactgat caaaaccagg ccaatagccc
     3061 aactcattat ctcgttttgt gtgctatgac taaggcttct gctcataaat tgatttaaga
     3121 aacgtcaaat aagcggcgtt tatcttgtcc caagaatata gggttcttat tttttgtgtg
     3181 tttgcgtgaa tcatctcttg aaccttgaga ggttcattgt cttgatccaa aatttggcac
     3241 acctggtccg catcgcgaaa atacagagcg tctggcccta atatggcttt gttaaacgcg
     3301 ttatcgtggg ccacaataaa gacttgactg cccatagcct caagcagtga aggattcgtc
     3361 ccgccgacac tatgtccgtg aaagtacaag cgtgcatgat gtcttaaatt atccaagagc
     3421 tcttggttgt agatcccccc tagaaaacga atattggctt ggttttcgta tttctttgct
     3481 aagtaacggc caaaaggcgt tgcctcatgt ttccccacca ccaaacaaag cctttggttt
     3541 tggctttttg ccaccccgtc taatatcgtt tcaatattat tttcgggttc catgcgcgcc
     3601 accactaaat cgtaagtccc agcagagacg ctgtactgtc ctaaaacttt agcgtcaggt
     3661 ttttcaaaaa tctcagcccc gtatggaatg tannnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntctca gccccgtatg gaatgtacgt
     3841 cgaacgcact ccgtaagtgt ctttgagata ggcctcaatg gccgtattgt cagaaatcaa
     3901 ataatcactg cttttgaccg cccaagcctc tgctttggcc agaaatcgcc gtaccaaagg
     3961 gtggtattta gagcgtttcc actccaaacc atccatattt gttgcgatca aagttttttt
     4021 gggcagtagc ggataccata cggaactact ggtgtaaccc aattgcagga gaatatcaaa
     4081 gtttcttttt ctcgcgtcca acaaacaatt caaatcgtag ataaactgtc ctgcggtgcc
     4141 cagtttatat tcaggatcat aacaatggac caatctcgcg cccccaaaat ccttttgttg
     4201 ataagggtgg ttgtgtgagc aatacacgta gacttcgtgg cctcgatccg ccagatacgg
     4261 cgcaaaccac tcggcaaatt gttcaaatcc gccgtgatga ttgggaatcc ctctggtgcc
     4321 aaaaatcgct attttcatgc gccctctttt ttaagggcaa atgaaccgcc tattagaaac
     4381 ccgaccatca tgtagggctt aaaaattccc gttaccacca tggtcgccgc gnnnnnnnnn
     4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4621 nnnnnnnnnn nncatataaa accctgccgc gacaaggacc ccgttatatg atttatgcgc
     4681 ctggtctttc ggattgagat aattatataa atagagcaca ataaaaatcg tgaaataaag
     4741 caaaaggccc aggaccccgg tcttcatata gacgtaagcc accccattgt gcaccgtggg
     4801 tagatgctgt atcatctcgc cattaagccg cagctcaaaa ccagcatcca cggttgaacc
     4861 aaaacccttt ccttgcaacc atttgcgctc ttgatcaacc tcgttgagca ccaaactggc
     4921 ttcgtaggcg cgccaacgcg gccaaagcga gcgcctgtct ttgagatatg tgtcaaattt
     4981 gatcggctca aaggtctcgg tataagaatt ctttactttg gctaaaaagc ctgtcaaaac
     5041 ggtttggttt ttttgctctt ctggttcata ttgactcaga aaaaatgcaa atccagcacc
     5101 aaagccgagc aaagcaagcc ccataaccac ccccttggcg ttgagtttaa ggtaaccgta
     5161 ataggccatg atcatcaaca aaagaacgac gatcatggtt ctggaaaaat acaataagaa
     5221 cgaaaaaatc aaggcggcaa ccgcgatttt gtaaaacaag gtaaaccgtg tttttttgat
     5281 gggcaaatcc cggatacagg ccaccaagaa caaggccacc atttcaacgt ggtttagttt
     5341 gccaaaaagt tctctaaatt tttggaggtt tggccgataa cgcaatagtc cgatgccaat
     5401 atccaacagg tgcagcaggg cgaatccaaa acccaccaga acaattaaat tgtaaaaatc
     5461 tgcctttgac cttagctttt gtacggcata ataagtcgct aacattaccg tcaatggccg
     5521 taagaaataa accagatcct tgacaaagcc atacaccccc gcttggcgtg taaaaatccc
     5581 gagggaaccc acagccatca tcgccaaaat caaaagcact atttgagata atcctttgga
     5641 catacgtccg ttaaaatgaa gcagcaaaac cgcaagcgca accacaaagc tcagctctac
     5701 gctctcggcc catagggcaa taattatggc cactaggcct atttttgcag ttaactgatt
     5761 cattcttgtt gtgtgtagcc gaaggcctca aaatccttgg cgtataattg atttaacccc
     5821 gctttagcgc gcggagtcaa aacctctttt cttgattttc tatcatgccc tagggcaaaa
     5881 tattttatca aacttggctg ttcgccccaa atccgaacca cccttttcca tgacccagcg
     5941 gctttattgg cgtgcggcat ggaaataccc tgaattccgg ttttttcttt gggatagacc
     6001 aattcttggt ccaatcgctc caaatgcccg acataatcaa ccagtaattg gccttgattg
     6061 tcatgaagat aatcgtattg aggcaagaaa aaaaagtgtt gttgctttat tttttcaggc
     6121 agtacatttt gaacaaaatt ctcaaaactc aacaccctgg cgtaccccaa aaagtgatag
     6181 caagacaggg ctctttgata agggtcgcgc accaatgccc acttaaaata gttttgaaaa
     6241 ttatcctgcg agagataacc aaattgggtg tattgggccg cggtgagatg cgctaaacgc
     6301 tcgggacctt tttcagtatt taatttcgga cgcaaaagca acaccgcgcg ctcagaccaa
     6361 tttaacccga ggtccgcaag gtacatttgt tcgacgcttt gaccggccac cttaggaata
     6421 tggacaaata ccgttttgtg tttatgactg atcatttttg agcgattatc ttgtttaccc
     6481 cccacaaatc cagaacaggt ttttgagtga gttcttctat ttgccgcaaa gactcaatat
     6541 tttgacccaa gagctgagcg cttaattgct ccggtagttt ttcttcagag gggcgcccgc
     6601 caaataaaaa agccttaaca cgatcccggg aggattcccc catgacgctg tgcaaaagcg
     6661 ttcgcgccca tggggtgcgt agcgcattta gcgtcccttg atgcttgtag gccagggtct
     6721 gattgtgttg gtccgtcgcg cgctccagtt tgtagtggtc cacgcttaaa aactcggcta
     6781 aatcagcaaa ggccttttct tgaccctgaa cccattgttc aaaaatcatc acatgaattt
     6841 gtgcctttgg aaaagcagca taatacgcct taagcgggcc gatataatcg ctccattcca
     6901 tgtagcgatt gccccctccc caatgtcctg acagtggagc gtgtatggct tgttggaaat
     6961 tcttgctttg gtcataaccg acgctttttg ccatcaaata atgactaaaa gcccgctcta
     7021 ctgggtggcg caggctaatt acaattttgg ccttaggatt atgtgcttta atggctgcgg
     7081 ccgtttcctc gtgccataaa taagacgggc ttatatcccc ttttatttgg cttggcttgg
     7141 cctgagaaaa aagcgcccga taaacttcag gactttggat aatttttgtg tgatactcct
     7201 gctcaggctt aggcaaggcg taatcttgag gttggcttga actgactttt gaaaagtaat
     7261 tcagctcttt aacccgaggc acataaatat cgggatgttt ggacaaatat tggtagaggg
     7321 tcgtggtgcc agaacgcgct gccccaacca caaaaaaatc gactttacac tcttgcccta
     7381 ccacgttaaa aatgttttaa tccgatccgt tttatacaca taaagtaccg cggtaaagtt
     7441 ccaggccatc atgcttgctg cggtggccca agcagcgcca ttcatcccat agattggaat
     7501 caaataggcg ttaagcgcta tattcaaaac aagagcgctc gccacgatcc attgaaaggc
     7561 cttttgtttg cccgtcatgt ttagatagac ccccaccgat ccgcaaaacg cattaacggc
     7621 ttgacccaaa agtaaaatca gcaaagcgct ttttgccccc gtgtaggctg ccccaaacca
     7681 agacaaaatc cactcggcgc ccagagccaa aatcaaaatt gctggcgctg ttgagaaaaa
     7741 gataagtcgc gtactttttt tgacttttag agcaagtgcc tcgagagcgc cccggttata
     7801 gtcctcggct attttggtnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnna actattttgg gtgccaagac cgcattaact
     7921 gaggctaaag ccacagataa aagtaaggtg agttttaccg caacactata cacggccacg
     7981 acggcgtaat tgtcaaattg cttgagcatc aaaacatcga ggctttgcat gagcaaaaat
     8041 gaggctgcac tgatcgccat tggggctgat cgtcttaaga tttccttggt gcttattggc
     8101 gcagaaggct gaaatacgtt taaggggggt tgggaaaaat aatagagcaa taaggcggtg
     8161 gaggacagtg ccaaaaagac gaaactgccc aaaaacacat ggactaacca ctgaggttgc
     8221 cctaaaacaa ccaaagcaac aacccctaca aagaaaatta gataacgcag aatattgcga
     8281 aacaattccg aaacgtagat tctatcgatg gcgcgcagca catcaatatt aatcatcgct
     8341 atggcataaa acaataggcc ggtaaacgtt tggtagacca aatcgccgat gggtttagcc
     8401 ccaagggctg aaacaattgg atccaatgcg tataacagac catttagccc tacagaaagg
     8461 gcaaccacca acaagatcat gctgcgatag acttgtcgga tttgcccgag attattctgt
     8521 gcgctgtaga gccccgaata aaagataacg gattgctgca tgccaaataa ggcaatggct
     8581 ccgacaaata atagcaatgc ccggctgtaa tcgtattggc ccactaggtc aggagacaat
     8641 tcattggtca agtaaagtgt gcccaagaaa aagagcccca cacccagaag gcgcagggac
     8701 aataccccaa tacttcggcc tgtaattgaa ttgatattta ctttgcctga caataaattc
     8761 ataggctgga tcgctgaggt taagcgacta agccgctgaa gcgtgctttt tccctttgag
     8821 atacaagccc tttagccaaa agaatccgaa aaataacacc actaatccta aaggaatcag
     8881 cgtgcctttt ttatcaaaaa aatcagccgt cataaccagt cgagggctgt tcaccacagc
     8941 gacaacagaa ccgtatttgg tgcgttcggc cataagttct ttgttctctt caatcagctc
     9001 agtttttttc tcgaccaatt gatgcaggtt cgtattgttg atgcgtatcg ttggaatatt
     9061 caggtcgttg gtcataatgg cctcggcctc attctttcca gaatattcgg caaaaagcgc
     9121 atcgatcagc tcgatggtct tattattgcg ctcaatgcgt aaatcggttt cggcaaccac
     9181 gacttctttg atggtgttaa aattgtcatt gctgtttaaa tacgctaata ttttatccaa
     9241 aaccttagca tttggcgtgt tggtggtgac cgttattttg tgatagtggt attggggata
     9301 aaatatctca gaaaccatga ggtcttcctc ggtttcaata cgcgaaatat acgtgtctat
     9361 attgcggtca ttgggctcgc taacctttaa aagatcgtta acactgacca ctggctcgat
     9421 tagaatctcc aatatttctg gggtctctgg gttgagtccg acctctttta agaattgttc
     9481 gtctatttgt ttacacttga tgttaagaat ttcaacagcg tcataaacat aactcgagct
     9541 accaaagttg ttctgaacaa tcatgactgc ttgtcgtttt ggacgctgtg attgctgcca
     9601 aaacttaccc gcaaaatggc ctccaacgat catgatcgcc aaagcaatcc aatatttttt
     9661 gagaaattgt accgcgtgat agccacgggc caaccatccc agataaacat ttttaagttt
     9721 tttcaacacg taaaacaagt cgacttcttc tgtgtgcttt tccatggtgc taattaaatt
     9781 tggtgaatca cctcagccag agcctcttgc catgaccgaa taggttgttg taaggtttgt
     9841 tctattttat tgatgtccaa tacactgtat tttggacgtt ttgcaaaagt aggatattca
     9901 gcggtttcgg caagtttgac gccttccaat tgatgggttt gtttaaagat ttctttggca
     9961 aagccatacc aagtggtttg gccccgattg ctaaagtgat acgtcccata aggcgcttgt
    10021 ttttctaata accccaagag ggcgtctgcc aaatccaaag tgctggtggg gctgcccgtc
    10081 tgctcggtcg tgatggtcaa tgattttcct tggtctgcca gtttaagcat ggtcttgaga
    10141 aaattgtgac catatgggcc ataaagccaa gaagcgcgta caatataatg ggccgggtta
    10201 atctcctcaa cggcttgttc tccctgcaat ttgctctgcc cataaatccc aagtggcgcc
    10261 gtaggatgcg cttctaaata gggctgattg gcctttccat tgaacacata atcggtggag
    10321 acatgcagca gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngtatct actgcggtat
    10441 acgccgctgt gttcagaaca acgctgggtt tttgctcatc caaaacacgg ctcatttggt
    10501 cgggttgttc caaatcaaag tcctgacgcg tataaaactg cagcgtcaac tcagagaatg
    10561 ccaagcagcg ctggcgaagg ctctgcccaa gctggccact ggctcctgtc accaatatat
    10621 tcttcatgcg gtagcgtcta aaaacgtcgg caatatttgg tccttctctg agaccaaaac
    10681 atcaccatgt tttagatgcc aatcaatggc aagggttgcg tcattataca gaattccgcc
    10741 ttccgcttct ttgttgtaga aggcatcgca tttataacaa aaagtcgcct ctgggctcaa
    10801 agtaataaac ccatgagcaa accctttagg cacaaagagt tgtatgcggt tttctgcgga
    10861 tagctctatg ctgtaatgct gtccaaaagt ggggctgtct ttgcgcaaat ccacaatcac
    10921 atccaggact ttacctgctg aaacgcgcac taatttggcc tgggcatacg ctcctgactg
    10981 aaaatgaagg ccccgcagca cgccgaattt agagatggat tggttgtctt gaacaaaatt
    11041 cacttcaagt ccggtgacct ggcgaaatgt ttctgcgtta taggtttctg aaaaaagccc
    11101 acgggcatcc tcaaattgcg ggggaatcaa gcaaaaagca cccttcaatg ccgtgtcaat
    11161 acgctccata ttaatccaat tgcattaggt gtttgccata accgcttttg agaaggggtt
    11221 tggctagttt tctgagctgg gcttgatcga tgtagcccat tcgataagcg gccttttcta
    11281 tggccccgat tttcagtcct tgacgggctt caataacttg aacaaactga gaggcttgca
    11341 tcaaagagct aaacgtccct gtgtcgagcc aagcggtgcc gcgatccaag acactaacac
    11401 tgagttctcc catggccagg taggcatnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncaggt aggcattgtt cacagcggta
    11581 atctcgagtt ctccgcgctc acttggggct atggattttg cgatctcgac cacacgatta
    11641 tcataaaaat atatgccggg aacagcaaaa ttagacttag gcttagtggg tttttcttca
    11701 atggagaggg cgttgccttg agcgtcaaac tcaaccacgc catagcgctc gggatcctgc
    11761 acatgatagg caaaaacaac gcctccggtg ggatcatttt gtgcttgcat gagttcgctc
    11821 agtcccgtgc cgtaaaaaat gttgtcgcct aaaatcaagg cgactttgtc ttttccgata
    11881 aagtcttctc caataataaa ggcctcggcc aatccgttgg gctcaggttg agcggcatag
    11941 ctgaaggcac aacccaattg ggtgccgtcg cccaaaagct tcttaaatag cggtaaatcc
    12001 tctggagtag aaatgatcaa aatctctcga atccccgcat acattaaggt ggttagcgga
    12061 taataaatca tcggcttatc ataaaccggc atgagttgtt tactcacggc caaggtcaat
    12121 ggatgtagac gcgtgcctga acctcctgcc aaaataattc ctttcatgat gctgcgcgtt
    12181 gtggttcgtt tatgaaattt gttctgtgtt ttttaatccg gctttaattc cttcgctccc
    12241 ttcattattc ttgcgacaaa cgctcaggat gtgccaaata ccattctatc gttttgacaa
    12301 tgccggtttc aaaagtttct tcagccttcc agcctaagtt ctgctcaatt ttagtggcat
    12361 caatggcata acgaaaatca tgcccgggcc gatccctaac aaaggttatt tggtccttat
    12421 acgccccatg aggctttggc cttaattcgt ctaaggctgc gcaaatgcgc tcagcaatgt
    12481 ataagttatt gcgctcgttg cgtccgccaa tgttataggt ttctcccaaa gtgccttgat
    12541 cgagcgcttt ttgtatcccc ttacagtggt ctaaaacgta aagccagtcc cgaatatttt
    12601 gaccgtctcc ataaatcggg atgtcctgtc ccgaaatcgc tttgcgtatg atcgttggga
    12661 tgagtttttc ccagtgttga ttcgggccat aattattaga acaatttgtc gtcaccacag
    12721 gaaatccgta ggtgtgaaaa taactccggg ccagcatatc agatcctgcc ttggaggcgc
    12781 tataggggct gttcggggca taaggggtgt cctcgcaaaa tagtccggtt tcacccaagg
    12841 ttccataaac ctcgtcggtt gaaacatgca aaaatcgggc gtgggcaaat tgatttttta
    12901 tcgcatttgg cccttccatc caatgctcat aagccgcatg taaaagttca aaagaaccca
    12961 gtaaattggt ttctacaaag gctctaggcc ccgttatgga gttgtctaca tgagactcgg
    13021 cggcaaaatg caccactgta tcaaactgat gttcctcaaa caattgtttt aatagattct
    13081 tgtcacaaat atcgccctga acaaaagtgt agttcttcag gccctcgagg gtttttagat
    13141 tgtctaaact gcccgcataa gtcaacttgt ctaaaacaac ccaattcgcc tcactaaggg
    13201 gcacgaagtg gttcacataa tttgagccga taaagcctgc ggccccagtg accaatattg
    13261 attgcgcgtt tgtgcttgaa cggtgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13381 nnnnnnnnnn nnnnnnnnnn nnnnnntgtg tgatttgctc aatgattttt tcggtaatca
    13441 cataggttgg gcgcaccccg gtcgtgccta ggcctcctga ggcaagtgta cttcctgact
    13501 cgagcggatt atcagaggca tagtaggcat aacgcaccgc cacagaggcg ttaatactcc
    13561 ctcttatttt tgaggcggcc tgaatcgctt tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncc
    13741 tgaatcgctt tctgataatg cgccccttcc atctcaagcc caatcacatc ccatgaagaa
    13801 ttgtggaaaa aattcaaaat atctttgttc tgcaaggagg tccccagaac agtaatcatg
    13861 gtgcctgaaa aagcgttatg gccttcaaaa tctttgagtt tcagcttatt cttaaatggg
    13921 tagttgtctg cagtcccttc aaatatgtgg gccctaggaa tcataatatc tcctttgccc
    13981 ccttctaaaa taccggcttt tcccataatg gaaatcgaga caaccggcat aaattttgtc
    14041 gttccggaaa aattaaatgg cttgagcaat tcatccatgg tttcataggc ttgctcccca
    14101 aaagcatagt ccattacaat gagaataggg gcgttcgcgt tcgggttgtt atagcgagaa
    14161 ggcaatgcct tggctaaatc tatgatttga acgtcaatat tggcttggct ttggtcgtct
    14221 aaataggtca tcccgttttt ttcggcaaat tccttaacct tttgtcgggc acttttattg
    14281 gtgtcttggc ttaaatattc ataaagggct aagctcgatt ttttggccgc ttcttttgga
    14341 agtgcctttg ccgcgtaaag ggtgttcatt acgctgtgca tgttggcgct gatgacatgc
    14401 gttgggcgtt ctgtcgcgcc catttgcgtc agcgtttctt tgatgcgttt ggcccagcgc
    14461 tccccgtgaa tatggtgtcc caagcgctcg cgcaatacag ggctgaacga aatctgacgg
    14521 gccttagttt tgtcgataac ctcatcgatc gccccttggc ctaaatgata gatcagccgg
    14581 ataaaatggt ctgggtcttg tttctgggca aaaagcggat aagacaattg gacctcctca
    14641 taggtgcggc ctagaaaact cgcggcatgc atgagcgcga gttcgcgctg agactgggtg
    14701 atttcttctt tttgggtcgc ggtctcggca aatttttgcc aatctctgct caggatccag
    14761 ccctcttctt tgctcacaag gacctgcttc ataatcttgt gagactctat atacataaaa
    14821 gtcaagtggg tcagaatatc ataaatctca ctgcgcccgc gtgtgatcac tatattcatc
    14881 tgttgctcgt caattcgata acaatggcgg cgacgttttg gggggattat tgcggggata
    14941 tgagatttgt tgtagccctc gtcactggtc aggctaataa attgacattg ttcgatccca
    15001 taaggcaatc ggtccataat gtagaccatg ccttgaagct ctattttttc ttcggcaatg
    15061 gatccataaa tttcagggcg taaggtcaaa agagcttctc tgagcgcggt tccactaatg
    15121 cccattggtt tataaaaccc acggttaaac aaatgtcgca tggtgatgta cacccgctcg
    15181 atcgcgttag aactctcctg agctcttgtg cgcgtatgtc ctaattgttg actcattttc
    15241 tgggcaaaga tacactaatt gtgcgcccac tgactcaaag gttccgccag cgcgcggtca
    15301 ttggccaatc ttggaacctt attctgtcct ccaaatcgcc ctaaactttt catcactgca
    15361 ttaaagcccc cgccgctcac ttgagtaatt tttaacggct gtagcacctt gccttgaatc
    15421 aaatccgcat aataaacatt ttgctcttgg agtttctgat ccagggcttg ggcaaaagcc
    15481 gtaaggtctg agggcaggcg ctcaaactcg acaaaccact cgtggtaggg cagctcctgg
    15541 ccctctgggg tgatttgtgg cgccaccgtg aactccgtaa tacttccgcc gcattgttgc
    15601 aaagcgtggg tcatgctttc ctcaacttct ttgccaatca catgctcccc aaaggccgag
    15661 ataaaatgtt ttagtcgccc actaaccctt atgcgatagg gcttaaggct cgtaaattga
    15721 accgtatctc caatattata cccccaaagt cccgcattag ttgaaatgat catgacataa
    15781 tccacaccga gttctactgt ttcgagggtg tgcctgcggg gcgacgggtc gaaaaactcg
    15841 gtggttttga cgaactcgta aaaaatacct gaatcgagct gtaagagcag ccccgtatct
    15901 tcttgacgat cttgaaaagc aaaaaaacct tccgatgccg ggtatagttc tatgctgtct
    15961 gttctacggc caatgagttg ttcaaacttt tggcgatacg gctcaaaatt caccccgcca
    16021 tagacgaata aattaaaatt aggaaacaat tcgcccacgg gtttgcctgt ggttttgatt
    16081 agtttttcaa aatacatttg tacccaagac gggatgccac tgattaatgc catgtcctct
    16141 ttcttggtct cgtgcacgat cgcctccact ttggtctccc aatcttctat gcaattcacc
    16201 gcccaagacg gcattctatt gcgttgtaaa taactcggca cataatgcgc cacaatgccc
    16261 gagagacgcc ccagttgaac gccatttttt tcactcataa cgggagaccc ttgaaggaaa
    16321 atcattttac gggagacaaa gcccgcattt ttggtttgat ggatataaag cagcagggcg
    16381 ttttttgcat tttcaatgtg gtgcggcatt gacgctttgg taatgggtat gtatttagcc
    16441 ccagaagttg tcccgcttgt tttggcgtaa taaaatggtt ttcccggcca aagaacatct
    16501 gaggcgcccg caaccatttg atccacataa ggtcttaagg cctcataatc acgaatgggc
    16561 acctgagcta caaaatcctg gtgcgtgtga atttgtgaaa aattgtgatc cgcaccgaat
    16621 tttgtgcctt tggccccttg aataagcgcg gcaaatacct tttgttgggt tttaataggg
    16681 tccttggccc agcgctcaat tttccttgcc gcaatcgcgg caagtctctt ggcaaaaaaa
    16741 gcttttattc ccattaatta aaatctataa agtttgttgg attgatgggg tagccatcgc
    16801 tccacaattc aaagtgtaaa tgtggccctg ttgttaaagc tcctgtattc cctgatgccg
    16861 caatgacctc tcctgatttc accaaatctc cttgtgccac agatagggac gcattgtgtt
    16921 tataaacgga aatcaaatta tccttgtgcc gcaggaccac aacataaccc gtgtcagcgt
    16981 tccattctgc caaaatcaca gtgccgtcag cggtcgcttt gaccggggtg tttttaaccg
    17041 tcgcaacatc aatggcaaaa tgtttttctt cgggatcata cgtccctgta ataaccccag
    17101 aaaccggtgg aaaaagcaca aaatcttgac ccgattcatc gcttaaggga ttgtatttgt
    17161 cttcttgttg aacgcgttcg cgcaataagg agtcttcttt agacgccgcc aatagctgag
    17221 catcgacctc gcgagcaacc gcttctataa tcgaatcttt gttcagagct gagggtttta
    17281 aattgcctgt caacacctcg cgaatggatt gaagataggt gtcattggct gccaaacgct
    17341 gttgcaggga atcggttagt tcgctgagac ttgccgcttg cttgatcagt tttgttgacg
    17401 cgtagcccgg aatatattcg cgcaaggggg ttaacgcgat gagcagggtc gtgcctaaaa
    17461 ttaagcccaa ggctgaaaaa acggtgatca caaaaacatt gagcctgttg agtctaaatg
    17521 aaaaacgctc ctcaaaagtg tcttcgttca gcactaaaag tcggtacttg tgtaccaacc
    17581 tttttctaaa acttttttta cctgaagtct tacgggccat gtgttaaggc ttataaaaac
    17641 aaatgtacgc ggattctctg aaacttaagg tcaaaacgcc gtatgttagt atttcttgtt
    17701 acatttgcta ataaattctt actccatgac tgcacaaatt ttgcccttag taatcggtgc
    17761 cccacaaatt atcttaatcg tggtggttgt attgttattg tttggtggaa agaaaatccc
    17821 tgaactcatg cgtggactgg gcagtggaat taaggagttt aaagacgctt ccaaagaaga
    17881 taagtctgag caatccgaag acggaaaata gtcctcttat tgcttgactc gagcgtcaat
    17941 acacgccttt tattttgtcc tattcttttt cgctttgatc cctgttgagg ggtgaaccct
    18001 tgggttatcg acacagggtc caacgcaggg tcgtgtcgct acttatctgg agtcgctacg
    18061 aagttgatgg tgcgcataat tgactcgagc tcaaactgca aatctctctt tcccatagac
    18121 ggggcataac taaagccctc gacaattaag tagtgttcat tgactgtgtc tttgatggcc
    18181 atattcaaat aaggccctcc cataaacgcg tcgctcaagg tccaaatacc acgagaaact
    18241 atggtttcac gcccttgtat aaactccatg ctcacttctg gaacatacgt ggtgtctgtg
    18301 ataaaccggg agtcatcttc aacgggcaat aaacgcgctc cgatcgcgtc tctaatatga
    18361 cgaatatatt gtccgggata ctctgcttgt gagggaatca tgctcaacgg tgccgtatag
    18421 atgagaatat tcgtggttcc attagagacc aagtcttttc ttaaccagta gtagtccttt
    18481 gaggaagccg cgatgcgata agctgagggc atctggaatt cgatcccaaa atcttgggcc
    18541 aatccctcag gaacttttgg ggaaatttgt gtacgccgtt gacgctcttt caattcaaag
    18601 gccttcatct gtgcaatcca ctgagtttgt tgtgcttgaa ccaaagcgat cagcgattcc
    18661 tcagagcgcc cttgggccac cgccataagt tgcgggcggg caaaagcatt ggttttaagg
    18721 ctggaggtgt cttggtctcc taaagacaag gatagaatta ggcgagaact tcgggcgaaa
    18781 tcggtaaaat gctcaggggc taagtgactt aagctaaata ggggctccat ttgtggcagt
    18841 cctggggtgg gggctgcgaa ccaactgcga atactgtcgc ccactgcact agaccagatc
    18901 tctgggggcg caacaacgtt tagggcattt attgaaccca ccgactcggg taaataactg
    18961 cggtctgtgg tgctgttttg gccgcaggcc aaaacaaggg tcatcgcgaa aagggcaatt
    19021 aattttttca tgatcgtggt tttaggctca aggccattcc tggtttaatc tctgacccac
    19081 taatatcatt ccattttttt aaatcttcca aagtaatccc cggtaacttc tgagcgatgc
    19141 cccaaagaga gtctcctctt tgcaccacat acacgtcctt attgttgttt tttgtgcggc
    19201 ttgacgcagt ggtttcgttt acaggaattc ttttggggat tatggtcagt ctttgtccta
    19261 ttctgagctg ggtgctttta agcccgttcc accgtttaat ttgcgcaacg gaaactccat
    19321 atttattggc tattttaccc aaataatctc cactttttac gcgatagcga atgcgattat
    19381 tttggtctac tagttcgggc agcggttttt ctctttgcgc aaaatcggca cgagccaagc
    19441 cgtaaagact atcttgattc tctacgagca agcccaaatc gctgaccggc attcgtaaat
    19501 aatagggccg gtcctcaata tagggaatga cccctagggt atattctggg ttcagaaatt
    19561 ccagcgtttc tagcggggtt tggctcaacg cagcgacatg ggacagggca atagtctggt
    19621 ttatttgtat tgtgtctgtg gtgacgtaat ggggctgggt gttggttggt gtcagcccat
    19681 acgcgctggc gtattcaaaa atatacatcg tggcataaaa tgccggtaan nnnnnnnnnn
    19741 nnnnnnnnnn nnnnnnnccc cgccgtttca cgtggtaaaa acgagcggat gttccagtaa
    19801 ttcttgcgcc ctcccgagcg gcgtatcgcc ttgctgacat tgccggggcc actgttataa
    19861 gccgccaagg ctaaatccca atcgtccaaa atatcataga gctgattgag gtactcagcg
    19921 gcggcaatcg tcgattttag tgggttgcag cgctcatcaa catagctgtt tacttttaga
    19981 tcaaacatct tgccggtttg aaacataaac tgccacaagc ctcgagcgcc aactcttgag
    20041 gtcgccgtgg gcaccaaggc cgattccaca atggccaaat atttcatttc taaaggcaag
    20101 gcgtgctgag caaaaacttc ttcaaacatc gggaaataat aatgactcaa gcccataagt
    20161 cgctgcaact gcggacgtct gttttttaga taattccgaa caatctgttc gagagaactg
    20221 ttataggtaa tgtgaaaagg tgttttttga tctagggctg caagcctgga cttaaaggtt
    20281 tctgtcgacc ataaactatc gtgtaaaggg atgctgtccc attgagcact tattgcctgt
    20341 tgctgctctt caaaacgata ggtgtcccta aggagtgcgt accaggcgcg ctcaatttct
    20401 gctgcttttg gattattcct taagccgggg cttaaagaat cttgagggtt tgcgcccgcc
    20461 aaatcagcct ccttatcttg ctcagcaatg gagatttggg ttgtgcttgt tgaggctttg
    20521 gattcaggcg atgtgagggg ttcattttgt ccaaacatca aaaagggcaa ggcacaaaaa
    20581 acataaagag tgatgatacg atttttattt agtgaaccca ttgatttgat cattatttaa
    20641 gcgtttaaaa ccgcagcaat tcctggtagt gtttttcctt cgagcatttc aagcatggcg
    20701 ccgcccccgg tagaaacata acttacttta tcctcataat tgaactgttt taccgccgcg
    20761 acagaatcgc caccacccac caaggaaaat gcgccgtttt tggtagcctg ggcaatcgcc
    20821 tcacaaaggg ctattgtgcc atgagcaaaa gtcggcattt caaaaacacc aacaggtcca
    20881 ttaaataaaa tggttttgga ttgcgcgatg accgcagcaa acttctnnnn nnnnnnnnnn
    20941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    21001 ngcgtcaagg cccatccact gatcaggaat cgcattaatt tgggaaattt cagtgggtgc
    21061 ctcgttacta aattcttgag taatcaccgt atctatcggc aggtgcacca taaccccttt
    21121 ggctttggct ttggccaaaa tatttaacgc taattcttgt ttgtcgtcct caaccagtga
    21181 ggttccaatg gatcctcctt gcgccttgat aaaagtaaag gccattcctc ctccgatgat
    21241 caaatggtcg acagaatcca atatgcgttc aattattgta atttttgacg agacctttgc
    21301 cccgccaata attgcggtaa caggagactc gccgtcatgc attactttat tgacattgat
    21361 gatttccgag gccaataatg ttccaaaaca actttttcct ttgaaatact cagcgataat
    21421 tgcggtagac gcatgagcgc ggtgcgctgt tccaaaggcg tcattaacgt agatgtctcc
    21481 gtgcgccgcc aaagcttttg aaaactcatg atctcccttt tcttcttgag ggtaatagcg
    21541 caagttctcc aagagcaaaa caccaccttg tggtaatcgc gctacagcct cctgtgcttc
    21601 ttctccaata caatctgaaa caaaagccac cggcacaccc aagatctcag aaacatttga
    21661 ggttatgtgg cttaaagaaa attctgattc tttggacttt ggtcgcccca aatgggacat
    21721 taaaacacag cttcctcctt gatttaaaat atgcattatc gtcggtttag cggcctggat
    21781 tcgtgtggca tctgtcacct cgagattcgc gttaaggggt acgttaaagt ctacgcgtat
    21841 cagggcgcgc ttgccgttaa aatcaaaatc gttgagggtc ttcattacag gattgttttg
    21901 ccacaaatat aagtttttcc caggtctatg ccttgggaaa aatccgtaga tttgtttggt
    21961 ggagtacgcg caaatcattg gattaaacca tcttaaaaac catctgcaca ccagcgctgc
    22021 gcatggtcgc gtggcccacg cccaattgtt tagtggtcct acaggcagcg gtttgcttcc
    22081 tttggctttg gcctatgcaa aaacgctcct atgtgctggt ttagacccgg agggttcaag
    22141 ttatcaaagg gccgcacatc aggtggattc tttggtgcat cccgatttac attttatgta
    22201 tcccgtcaac tctacagact cggtcaaaaa atctccatca gtcctcgatt ttttgcctca
    22261 atggcgaagc tttgttcaaa acagccctta tggctcgtta atggcttggt accagcacat
    22321 cggattgggg ggcaagcaag gcagtatctc tgtttccgat acggaacaaa tgacccgaac
    22381 gcttgcgctt aaatcttacg aaggcggatt caaaattatg atcatttgga tggcggagaa
    22441 aatgaactca gaatcctcca ataaaatttt aaaactcctg gaggagccgc cagcaaaaac
    22501 ggtttttctt ctgctaaccg aagaggaaga caaaatctta aagacgattt attcgcgctg
    22561 tcaattactc agccttcccc tgctttctca aaatgattta gcccaagcac tgacgcagca
    22621 tcacggactt acgcaacatc aggcacagtc catcgcaaaa acagcgcatg gggattacta
    22681 caaagcacag cagcttattg acgctcaagg cgaggaacct ttatttgaac agtggttttt
    22741 gcagtgggcc cgcggcgcct tcaaagcaaa aggaaacaaa aaggcaatac aagaattgct
    22801 cagttggagt gaccatatgg cgggtctagg aagagaaacc caaaaatcct ttttgaccta
    22861 ttgcagtggt ttaattcgtc aggcgttttt aacccactac aaaacaaggt cgctggtcta
    22921 ttacaatgaa taccacgaag actttgattt agctaaactt gctccattta ttcatcaaaa
    22981 caatatttgg caaattcaag gcgcgcttca agaggctgag gaacacatcg agcgcaacgg
    23041 caatgcaaaa atcattttta ctgatcttgc cgtacaattg acacggcttt tacatcaaag
    23101 cgcagattaa tcgtttttga taattgttta gtttgttttc aatagaatat tcttattaaa
    23161 aagagcttat ttaaaggcgt tttgcgcttg tttttgcgtt tttccacaaa cacccttcag
    23221 caagacgact cgtcgcccgt aaaggcgatt aatttcgttt tttaaggaca taagccagag
    23281 aagatggttc cttgctaatc aaggcgcaga aatttgacca tattccgatg aatatccctc
    23341 tcagcagaaa tccatggttt tctttatagc gctccgaaag caggctcaca taaacagcat
    23401 cgaaccacat ggggcgcgtt tgcgtcagct caaaatcttg attaaagagg gcgtgcatgc
    23461 tttcccttga gaagtgccat aaatgtctgg gcacatcgta ggccgcccaa tgatgacgat
    23521 aaaactttgc gtcccacgat ttcaaattcg ggaccgcgac aatcaacacc cctcgctctg
    23581 aaagatgttg gctaagccat tttgccatct cgccaggatc atctaaatgt tctaggacat
    23641 gccaaagcgt gatcacatca tatctctgcc gccccatttg ggattgcgcc ttaaatattt
    23701 tcagtccctt gttgcttact gcggaacgcg ccagttcatt aacctctata ccttctccat
    23761 cccacgaggc gttgtttgct gctttaagaa agtcacccgt gcccgaccca taatccaaaa
    23821 gttttttacc cggaggattt gctttattta accatttaag tttaatgcgc ctattccaat
    23881 ttcgtacaag gcgataggct tgggccatta aacctgtggt tttctcattg tgagaaatgt
    23941 aatctgggtg attgtaatac ggcgctaatt cttttgggcg gggggttgtt tgataagcct
    24001 tatattcctg gttccacacc aaggaaaagc tttctgccgt aaccatataa tccgtgactg
    24061 ctttgggaac atgagattcg atggcgctgg tttttgtcat tatttactgc gttgtttcac
    24121 gtgaaacatt accgccccat aaacaccaaa agcactgaaa tatcattggg cgacaccccg
    24181 ctgatccttg atgcttgcga tatggtggcg ggctgaatgc tgcttagttt ttctcgggct
    24241 tcaaaagaca aggattttaa cttactatag tcaaaattct tggggatttt tatgccttcg
    24301 agtctggtca gcttttcggc attatttttt tccttctcaa tatagcccga atacttgact
    24361 tgaatctcaa cctgctctaa cacctcaaca tcaagttggt gtgcgtccac atagtccgcg
    24421 actgccttaa catcaaacat atcttgcata ctgatgttcg gacgagaaaa gaacttaaac
    24481 aacttatcac tttgcggcgc cagggacgag tcgtggcgat cgagaatcgg attgatctct
    24541 tcagggagca cacttgttgt tttaaaaaac tctataaacg acgcacttga cgcatatttc
    24601 tgctccattc gcttcatcct cgcttcactc gctaagccca gatcatggcc ctttggggtc
    24661 aacctgtagt ccgcattatc ttgtcgcaac aaggtgcgga actccgcccg cgaggtgaac
    24721 attcgatacg gctccttggt gcctttggta attaaatcgt ctatgagtac gccgatataa
    24781 gcctcgtccc gcctcaaaat aaacggctct tgttcacgac ataaaagcgc ggcattaatc
    24841 cccgccatga gtccttgagc gcctgcctcc tcataacctg tggtgccgtt aatctgaccc
    24901 gcgaagaaca ggcctgaaac gattttagtt tctaagctgt ggcttaactg tgttggcgga
    24961 aagtaatcat attctatggc ataccctggt cgaaacatct tgacctgttc aaagcccgcg
    25021 caggccctta gcgcccgcaa ttgaacatcc tcaggcagcg aggtactaaa tccattgatg
    25081 tagtactcaa ccgtattcca cccttcgggt tcaacaaaca attggtggcg atctttatcg
    25141 gcaaaacgat gaattttatc ttcaatagac gggcaatatc gcggcccggt actcttaatc
    25201 gcgccattaa acattgggct acgatcaaag ccttctcgca ataattcatg gacggtcaag
    25261 ctggtatagc tcatatgaca cgagcgctgc tgcgccaaag gtttcgtttg atcactaaac
    25321 gagaactttt gtgggtcttc atcgcccggc tgctctacca tttttgagaa atccaagcta
    25381 cgcccatcga ctcttggagg cgtgcctgtt ttcattcgcc ctgtttcaaa acctaaatca
    25441 accaacactt cggtgatccc cgtagcggct cgttcacc
//
LOCUS       DPUP01000160            5750 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6752,
            whole genome shotgun sequence.
ACCESSION   DPUP01000160 DPUP01000000
VERSION     DPUP01000160.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5750)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5750)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5750
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..103)
                     /locus_tag="DHV98_05860"
     CDS             complement(<1..103)
                     /locus_tag="DHV98_05860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="D-arabinose 5-phosphate isomerase"
                     /protein_id="HCK05882.1"
                     /translation="MIDLKPIIQVAKETVETEAKAIQHLATLIDEEFA"
     gene            274..2502
                     /locus_tag="DHV98_05865"
                     /pseudo
     CDS             274..2502
                     /locus_tag="DHV98_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782976.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
     gene            complement(2514..3713)
                     /locus_tag="DHV98_05870"
     CDS             complement(2514..3713)
                     /locus_tag="DHV98_05870"
                     /inference="COORDINATES: protein motif:HMM:PF07766.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05883.1"
                     /translation="MNPSSAGWIKKFIKEIDQKALCGAYNEVHDLYRGLKSSGFMYGM
                     SLVGLAPQTKTTLNLTVEEHTKLNLLHALCFVYFKQNPKKEYSDCIEAVVSFYELMGK
                     GQPGLLHKLSFAKNPSDNLEAMINARLHENNLGRNAEVSSLITYVLLFIDILVFQEYL
                     KGDQEVQKAFDRMEYLCIQSCAWALESKLQPNKYDHMFIEMLQNALKKPLKQTEIPAQ
                     VLLGQMAEITLLFKEFLMDVCCLGVWDDRTMDAAELHFLQDFEKALGLESGTALAGVS
                     DLDQFSRTHAQSVRLFEHANPVKLLYKQSSAMVKTLILRNKNRLIKELAESGELVKLL
                     TLSTVRDLNKKEKQKVKDQLLDICKTVPSLTLFLLPGGSLLLPIMVKLIPKLLPSAFN
                     ENAIEES"
     gene            3785..4495
                     /locus_tag="DHV98_05875"
     CDS             3785..4495
                     /locus_tag="DHV98_05875"
                     /inference="COORDINATES: protein motif:HMM:PF14224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05884.1"
                     /translation="MSKIYSLIPILSLGVLWVLLSGSEQGDGPSVAYTSADIADFYAF
                     RGAQADKTVFVVTLQSPLSVGTVSQEARFDPDVMIEFNIDNDGDFKEDLVIQAIPRDS
                     LMYFFGPSAVAPENQGISSEINVNDLMGSVQISDLEQTFIAPLDSISLFAGPRRDPFF
                     FDQVRFSLIQNGTVAPEGFNSGVEAVDAFAQSNVLTVAITLPTELLGVAPSHALNDYG
                     DFNLPNAYNVWVSTKRKY"
     gene            4497..>4797
                     /locus_tag="DHV98_05880"
     CDS             4497..>4797
                     /locus_tag="DHV98_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05885.1"
                     /translation="MALLNLRFWRFLPILALLVVSCEDADDFNNVIEQVSCSDGIQNG
                     DETGVDCGGSCPQCIDGLDFSGVYVQQDIAGRPAINSVFNINGPLQDAFNRAAVTA"
     assembly_gap    4798..4946
                     /estimated_length=149
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4947..5368
                     /locus_tag="DHV98_05885"
     CDS             <4947..5368
                     /locus_tag="DHV98_05885"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05886.1"
                     /translation="TARGAQDVISGSSNLTFPQVFKDNIDLYFVGYALNEAPVSFQTN
                     VLGFDAPGFAEFLATTDALQLAADGPTTYRSADLWFTGRQLTDDVMDTTLLLLYGGAE
                     GDRFDGVNGPMLISDGVGLGNRVFLSDFPYLEAPLTQ"
     gene            complement(5479..>5750)
                     /locus_tag="DHV98_05890"
     CDS             complement(5479..>5750)
                     /locus_tag="DHV98_05890"
                     /inference="COORDINATES: protein motif:HMM:PF03073.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TspO protein"
                     /protein_id="HCK05887.1"
                     /translation="FTVYLTLLWKNQSIRKALRTLFGLSWLLNVLWNPVFFSLHQTTF
                     ALFLISGLLLLLMVMAVKFAKFLGYKTIWILPYIAWLIIATSLNA"
BASE COUNT         1569 a         1146 c         1273 g         1604 t
ORIGIN      
        1 gggcaaattc ttcgtcgatg agtgtcgcta gatgttgaat ggccttagcc tcagtttcta
       61 cggtctcttt tgcgacctga ataatgggtt ttaaatcgat caaaatttca cttatttaat
      121 tggtacgctg cttagatttt tctatcttta aaagaggttt attgccgagc aaggcggtta
      181 cttcttagat acatcgcatc gctaatggtt gcaaaattac aattgttctc gagttcccgc
      241 aatttattgt tataaactcc agacagaaac aaaatgaaca aagaatacag caaagaagaa
      301 ttatccgctg cgctcaagaa ttatttcggt ttttcggggt ttaaaggttt gcaggaaccg
      361 gtcattatga atgtgctggc cggtcgagat tcatttgtaa tcatgcctac tggtgggggt
      421 aagtcgctct gttatcagtt gcccgcactc attagttctg gtgcggccat agtggtctct
      481 ccactgattg ccttgatgaa aaatcaagtt gactttttaa agtccttgtc cgataccgag
      541 ggtattgccc atgtgcttaa ttnnnnnnnn natgtgctga attcgtcttt aaccaaagcc
      601 gagatcaaac aagtgcgcgc agatgtgcgc tcaggcgtta caaaattact ttatgtcgct
      661 cccgaatccc tgaccaaaga agaaaatata gagtttttaa accgtgtgac gatttcattt
      721 gttgccattg acgaggcgca ttgtatctct gagtggggtc atgacttcag gccagaatac
      781 cgcaatttgc gcaaaattat tcagcgtttg ggcggggaga tacccattat aggccttacc
      841 gctacggcga caccaaaagt acaagaagac atattaaaaa atcttgggat tcaagaggcg
      901 accactttta aagcttcgtt taatcgaccg aatctctatt acgaaatacg tccaaaaaca
      961 aagtctgtag atgcagacat tacccgtttt gtcaaaaata atgaagggaa aagcgggatc
     1021 atttattgtt tgagtcgcaa gcgcgttgaa gaattagcac aaacccttca agttaatggg
     1081 atacgtgcga tcccttatca tgcaggcttg gaccctaaga caagggttaa aaatcaagat
     1141 atgttcctta tggaagatgc tgatgttgtc gtcgcaacga ttgcctttgg tatggggatc
     1201 gataaaccag acgttcgctt tgtgattcat aacgacatgc ccaagagtat agaaagttat
     1261 taccaagaga cgggaagagc gggtcgagat ggcggagagg gacattgttt ggcgttctac
     1321 agttacaaag acatcgaaaa actcgaaaag tttatgagtg gtaagcctgt ggcggaacaa
     1381 gagattggtt tggcactgct tcaagatgtc gtggcttttg ctgaaacttc tatttcccgc
     1441 cgcaaattta ttctccatta ttttggggaa gaatttgata atgaaacggg tgaaggaggc
     1501 gatatggatg ataatatgcg tcatcctaag aaaaaacacg aagccaaaga tcagcttgtt
     1561 gatttgctca atgccgtggt acaaacccat cagaaataca aagccaaaga agtggtgcat
     1621 ttcatgcgcg gtaaggttaa tgctttaatc aagtcccaca aaacagacgc catggcgatt
     1681 tttggcgctg gcagtgatca accttctgaa tattggatgg cattgattcg ccaagcgctt
     1741 gtggcaggtt tattgaccaa agacatagaa acctatggtg ttttaaaact aagtgatgca
     1801 ggacatgcct ttctcgaggc cccgacgtcc tttttaatga cggaagatca tcgctataaa
     1861 gaggcaaacg acgatgtggt ggtcagtacg gcaggtcaag taggcgccgt agctgatcaa
     1921 acactgttca aattactcaa aggacagcga aaaactattg ccgataagct cggtttgccc
     1981 ccttttgtta tttttcagga cccatctttg gaagatatgg ccctaaaata tcccatcacg
     2041 atcgaggagc tgtccaacgt tcatggggtt ggtgatggaa aggccaaaaa atacggcgcg
     2101 agttttgtga ctttgatcga aaactatgtc actgagaatc aaatcctccg tcccgatgac
     2161 tttgtcgtta aatcaacggg atcaaacagt gccctaaaac tctatatcat ccaaagtgta
     2221 gatcgcaaac taccgctaat tgatattgcc caggccaagg gtcttgccat ggaggacttt
     2281 attaaagaga tggaagccat tgtttacagt ggaacaaagc tcaatattga ttactatctg
     2341 gaagatattt tggatgaaga ttctcaagag gaattacacg attatttcat ggaggccaaa
     2401 agtgatcagg taggccccgc tttggaggcc tttgacggcg atttcgagga agaggaaatt
     2461 cgcctatacc gcataaaatt tatcagtgac gtggcgaatt aagccgaggc gtcttatgat
     2521 tcttcaatgg cattttcgtt aaatgccgaa ggcagcagtt ttggaataag tttcaccatg
     2581 atgggtaaaa gcagtgagcc cccagggagc aaaaataagg tcagtgaagg gacggtttta
     2641 cagatgtcca gcaattggtc tttgaccttt tgcttttcct ttttattgag atcacgcacc
     2701 gtggacaagg tcaaaagctt taccaattcc ccgctctcag cgagctcctt aatcaatcga
     2761 tttttattgc gcaaaatcag ggttttgacc atcgcacttg attgcttgta caataatttt
     2821 actggattag catgctcaaa tagccgcact gactgcgcat gagtgcgaga aaattggtcc
     2881 aaatcgctaa cacccgccag ggccgtcccg gactcaaggc ccaatgcttt ttcaaaatcc
     2941 tgaagaaaat gaagctctgc agcgtccatc gttcgatcat cccatacccc taaacaacag
     3001 acatccatta aaaattcttt aaataaaaga gtgatttctg ccatttgccc caagaggact
     3061 tgcgctggaa tttctgtttg cttgagtggt ttttttaggg cgttttggag catttcaata
     3121 aacatatgat catatttatt gggctgtaat ttgctctcta gcgcccaagc gcaagattga
     3181 atacacaaat attccatgcg atcgaaggcc ttttgtactt cttggtcccc tttgagatat
     3241 tcttgaaaaa ccaaaatatc gataaacagt aacacataag tgatcaatga ggagacctcc
     3301 gcattgcgtc ccaggttatt ttcgtgcaag cgagcattga tcatggcttc aagattgtca
     3361 cttggatttt tggcaaaact cagtttatga agcaaacccg gttgtccttt gcccataagt
     3421 tcataaaaag aaacaacagc ctcaatacag tcgctgtatt ccttctttgg gttttgtttg
     3481 aagtacacaa agcacagggc gtggagtagg tttaatttag tgtgctcttc aaccgtcaaa
     3541 tttaacgttg ttttggtctg tggggctaat cccactaaag acataccata catgaagccg
     3601 ctcgatttta atccgcgata taaatcatgg acctcattat aggcaccgca aagggccttt
     3661 tgatcaatct ctttgataaa ttttttaatc caaccagctg aagacgggtt catttgttat
     3721 ttttgtggag ttaggccaaa cgttggttta aaattaaaga aatcattcac cacattggaa
     3781 ggatatgtct aaaatttatt ccctaatacc catattgagt cttggcgttc tatgggtgct
     3841 tctctctggc tcagagcagg gagatggtcc ttctgtggcc tacacctctg ctgatatcgc
     3901 cgatttttat gcttttcgcg gagcacaggc agataaaacc gtatttgtcg tgaccctgca
     3961 gagtcccctt agtgtgggaa cggtttcaca agaggcgcgt tttgatcccg atgtaatgat
     4021 tgaattcaat attgataatg acggtgattt taaagaggat ttggtgatcc aagccatccc
     4081 tcgagacagc ctgatgtatt tttttggacc cagtgcagta gcccctgaaa atcaaggtat
     4141 ttcttctgaa attaatgtaa atgatttaat gggatctgtt caaatctcag atttagaaca
     4201 aacctttata gcgccacttg attctattag cctttttgcg ggcccaagac gcgatccttt
     4261 tttctttgat caggtgcgtt tttcattgat acaaaacgga actgtggccc cagaaggttt
     4321 taattcgggc gttgaggcag ttgatgcctt tgcccaaagc aatgttttaa ctgtggccat
     4381 caccttaccc actgaattac ttggcgttgc gccatcccac gctttgaatg attacggaga
     4441 ttttaatctg ccaaacgctt acaatgtttg ggtaagcacc aaaagaaaat attgatatgg
     4501 cattattgaa tctacgattt tggcggtttt taccaatttt ggctttactg gtggtctctt
     4561 gtgaagatgc cgatgatttt aacaacgtta ttgaacaagt gagttgcagc gacggaattc
     4621 agaacgggga cgagacaggc gtcgattgcg gtggttcatg ccctcagtgc atcgatggac
     4681 tcgattttag tggggtttat gttcaacaag acatcgccgg gcgaccagca attaattcag
     4741 ttttcaatat taatggtcct ttacaagatg cctttaatcg tgccgcggta acggcccnnn
     4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4921 nnnnnnnnnn nnnnnnnnnn nnnnnntaac ggcccgtggg gctcaagatg tcattagtgg
     4981 ctcaagtaat ttgactttcc ctcaagtatt taaagataat attgacttgt attttgtagg
     5041 atacgcgctg aatgaagctc ctgtgagttt tcagacgaac gttttgggtt ttgacgcacc
     5101 gggatttgcc gaatttttgg ccaccaccga cgcattgcaa cttgcggcag acgggcccac
     5161 gacttatcgc agtgcagacc tttggttcac cggacgtcag ctcaccgatg atgtgatgga
     5221 caccacctta ctcttgctct atgggggggc agagggagat cgttttgacg gagtcaatgg
     5281 ccctatgctc atcagcgatg gtgttggcct agggaatcgc gtctttttat cggactttcc
     5341 ttatctagag gctccactca cccagtaggc gtactttaat tttttggtga ctcaagacgg
     5401 gtcatcaaac gcgcgcccag tccagagatt ctcaagtaca gaatggtaaa aatgccatta
     5461 ggggttttgc aaaacgattt aggcattgag cgatgtggca atgatcagcc aggcaatata
     5521 gggaaggatc cagatagttt tatagcccaa gaatttagcg aatttaaccg ccataaccat
     5581 caatagcaac agtaatcctg aaatcaaaaa taaggcaaaa gtggtttgat gcaggctaaa
     5641 aaatacggga ttccaaagga cattcaacaa ccaactcaga ccaaagagcg tcctaagcgc
     5701 tttgcgtatg gattgatttt tccatagcaa agtcaaatag acggtaaaac
//
LOCUS       DPUP01000161            2608 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_43832,
            whole genome shotgun sequence.
ACCESSION   DPUP01000161 DPUP01000000
VERSION     DPUP01000161.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(123..656)
                     /locus_tag="DHV98_05895"
     CDS             complement(123..656)
                     /locus_tag="DHV98_05895"
                     /inference="COORDINATES: protein motif:HMM:PF05163.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05888.1"
                     /translation="MNEPNSLTRQGILVKIKLDETTPNKSLISRLEEFERLLHLTLPK
                     IEREGLWISPNAQIPCLGVQLAHMEGNLRQYIVTNLSHQNDLRQRTLEFTVRPEISLQ
                     QLSTNLLEALAQAKNLIKQAPSRVWSEVYHVQTFSMTRLEACIHALEHLHYHLGQMAL
                     LIKLNRPQDLAFYPEIN"
     assembly_gap    1133..1175
                     /estimated_length=43
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1176..1787
                     /locus_tag="DHV98_05900"
     CDS             <1176..1787
                     /locus_tag="DHV98_05900"
                     /inference="COORDINATES: protein motif:HMM:PF00691.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05889.1"
                     /translation="LEIIGHYDPSEPIADPNLGVQRSVKVKNELVAVGLNPDRIKCRG
                     DLQRLFDKNSRIPPIVISASSLLTERPDDAPADPNEAAARKNPNLPKYNSIVYHPSFS
                     DQGVMIKSDLMELTPGIAQWLALDAQNYIELWGHTDHVGHDQDNYRLALKWAQQLRGF
                     FISQGIDANRLKARSAGEQQPLYTNSNSRGRLKNRRIELIFKY"
     gene            1791..>2009
                     /locus_tag="DHV98_05905"
     CDS             1791..>2009
                     /locus_tag="DHV98_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015753451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+:solute symporter"
                     /protein_id="HCK05890.1"
                     /translation="MQLTALDWLLIGLFFLIFLIIGWRVAKRSGSNTKEFFLSGQDMP
                     WWLLGISMVATTFSADTPNLVTDIVRQNG"
     assembly_gap    2010..2174
                     /estimated_length=165
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2175..>2608
                     /locus_tag="DHV98_05910"
     CDS             <2175..>2608
                     /locus_tag="DHV98_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Na+:solute symporter"
                     /protein_id="HCK05891.1"
                     /translation="TPNLVTDIVRQNGISGNWVWWAFLLTGMLTVFVYARLWRRSEVL
                     TDLAFYEMRYSGNAAAFLRGFRAIYLGVFFNVMIMAAVCLAAIKIGGILFNLEPWEAV
                     FYASVVTVLYSSLGGLRGVIFTDFLQFIVAMVGSVWAAYYII"
BASE COUNT          648 a          489 c          547 g          716 t
ORIGIN      
        1 aggacgtgta atgcccgtta tgattttaac aattggcact tacagcgtgt attacacaaa
       61 tcagtgtaaa aaaaagcggg attctgcgcc ctagtgcatt gatatatggt ttttccaaat
      121 acttaattga tctcaggata aaaggcaagg tcttgagggc ggtttaattt tatcaataag
      181 gccatttggc caagatgata atgtaaatgt tctagggcgt gaatgcaggc ttctagccgc
      241 gtcatggaaa aggtttgaac atgataaact tcactccaga cgcggcttgg ggcttgctta
      301 attagatttt tggcctgtgc caaagcctcc aataagtttg tggacaactg ctgtaagcta
      361 atttctggtc ggaccgtgaa ttcaagtgtt ctttgacgca gatcattctg atggctcaaa
      421 ttagttacaa tatactgcct taggttacct tccatatgag cgagttgtac ccctaaacag
      481 ggtatttggg cattaggaga gatccataac ccttctcgtt ctattttcgg gagggtcaga
      541 tgcaacagtc gttcaaactc ctcgagcctg ctgattaatg atttatttgg tgtggtttcg
      601 tccaatttta ttttgactaa aattccctgc cgcgttaggg agttaggctc gttcattttt
      661 gtaaatttag acaaagtttt tctagtcttt gaatgaaggg gcctcttaaa aagtttttgt
      721 ttctattact cttgtggtcg ggttttggct ttgccctaaa ccagtatctt gaacaaaagc
      781 ccgtaaacac gctaccagct gaccctgtaa atgagttaaa ctcagatgaa gcgcctccct
      841 atgatcagac tttaatatca gaggagaata atgctgttac agagtcgata caagaaagta
      901 atgaaaattc agaagcctta aataataaga cttcagagga ttccgcagca gagacagttt
      961 cgccagaatc aactccagag acaattccag agataaaaaa gtttgagccg atagccctag
     1021 gattcgatgc tttggatatt gttcggaaca ctccagaggt gatttggaaa aaaaactgga
     1081 aagatttgtc cgaacggcta cgctataata tgaggataaa tccagagtta aannnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnctaga gatcatcggt cattatgatc
     1201 ccagtgaacc catagccgac ccaaaccttg gggtacaacg cagtgtcaag gtaaagaatg
     1261 agctcgttgc tgtcggcctt aatccggatc gcatcaaatg ccgcggagat ctgcaacgac
     1321 tctttgataa aaattcaagg atccctccta ttgttattag cgcctcaagt ttacttaccg
     1381 agcgtccgga tgatgcgcct gcagatccta atgaggcggc tgcccgaaaa aacccaaatc
     1441 tacctaaata caattcgatt gtatatcacc caagtttttc ggatcaaggc gttatgatca
     1501 aaagcgatct tatggaatta actccgggaa tagcgcaatg gcttgccctt gatgctcaaa
     1561 attatattga attatggggc cataccgatc atgtgggcca tgaccaagac aattatcgat
     1621 tggccttaaa atgggcgcaa cagctgcgcg gtttttttat ttcccaaggc atcgatgcca
     1681 atagactgaa agcacgttct gctggagaac agcaaccttt atacaccaat agcaattctc
     1741 gcggtcgcct aaaaaaccgt cgtatagaat tgatttttaa atattaacct atgcaactca
     1801 ccgctcttga ttggcttctt attgggctat tttttttgat ttttctaatt attggttggc
     1861 gtgtagcgaa gcgttctggg agtaatacca aagaattttt tctatccggg caggatatgc
     1921 cttggtggct gctgggtatt tccatggtag cgaccacctt cagcgccgat accccaaacc
     1981 tagtcacgga tatagtccgt caaaatgggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnncacgcc aaacctagtt accgatatag tccgtcaaaa tggaatttcg
     2221 gggaattggg tatggtgggc ctttcttctg acggggatgt taacggtttt tgtttacgct
     2281 agactctggc gccgctcaga agtactgaca gacttagcct tttatgaaat gcgctacagc
     2341 ggtaacgcgg cggccttttt gagaggcttc cgtgctattt atctcggggt attctttaat
     2401 gtaatgatta tggccgcagt gtgtttggct gccattaaaa tcggaggaat tttatttaat
     2461 cttgaaccgt gggaagccgt gttttacgcc tccgtggtga ccgtactcta cagctctttg
     2521 ggcggtttgc gcggggtaat atttacagac tttttgcaat ttattgtcgc tatggtgggt
     2581 tctgtatggg ctgcttatta catcatta
//
LOCUS       DPUP01000162           10439 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_953,
            whole genome shotgun sequence.
ACCESSION   DPUP01000162 DPUP01000000
VERSION     DPUP01000162.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10439)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10439)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10439
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            19..924
                     /locus_tag="DHV98_05915"
     CDS             19..924
                     /locus_tag="DHV98_05915"
                     /inference="COORDINATES: protein motif:HMM:PF04932.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05892.1"
                     /translation="MHGVIYSSVAAAIYSLVRLVILLNQGASFGFLESAHIIEALLMD
                     RIYLGLLSVLSIIFSYKLLRKEFDPNNGYYLANIILQAAFILFLVSRIAIVVLLLSFV
                     LSLWYRQKRGPQLLFFGGSITLIVALAFVLSNDLRKQFFYNNNPEHQEGLLANTMALE
                     PRMVIWDCALDLALQQSVAVTGNGFTQTNLDMLTCYESDIDNPIKKSWFLTKKYNVHN
                     QFLDLYLGSGLLAMMLFAAGLIASFFKHRRSLYPSALVMAAVIFLMAENMFHRQIGAY
                     YVGLIWALLMFLPKDHSTEKPEKQE"
     gene            1004..2317
                     /locus_tag="DHV98_05920"
     CDS             1004..2317
                     /locus_tag="DHV98_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020529559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HCK05893.1"
                     /translation="MKITVVGTGYVGLVTGTCLAETGNEVLCVDIDQAKVDMMQAGKV
                     PIYEPHLDVLFERNIKAGRLTFTTDLHQGLDHGEIIFLALPTPEDEDGSADLSYVLGV
                     ADKIGRYITSYKVIVDKSTVPVGTAEKVTQVISANAKCDFDVVSNPEFLREGFAVDDF
                     LKPERIVVGSSSERATALMQKLYAPFVRSGNPVIVMDEKSAELTKYAANSFLAAKITF
                     MNEVANYCEMVGADVDKVRVGMGTDSRIGKRFLFPGIGYGGSCFPKDVKALQKAGRDA
                     GYEFKILDAVIGVNQSQKTIQIPKILAHFGQDLKGKKIAIWGLAFKPETDDIREAPAI
                     DVIHALLDHGATVEAFDPEAMDNIRKRFGERISFGGHMYAPLQDADALVICTEWSIFR
                     SPNFEKVKDLLKQPVIFDGRNLYNTQDMEREGFSYTSIGRNTVQP"
     gene            2314..3318
                     /locus_tag="DHV98_05925"
     CDS             2314..3318
                     /locus_tag="DHV98_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dehydratase"
                     /protein_id="HCK05894.1"
                     /translation="MSSDNKGETVLITGAAGFLGSHLCDRFIAEGFRVIGMDNLITGD
                     LKNIEHLFGLEQFTFCHHDVTTFVHVPGPVDYILHFASPASPIDYLKIPIQTLKVGSL
                     GTHNLLGLAKEKKARILIASTSEVYGDPLVHPQKEMYYGNVNTIGPRGVYDEAKRFQE
                     SITMAYHRFHGLDTRIVRIFNTYGPRMRLNDGRVIPAFMGQALRGEDITVFGDGSQTR
                     SFCYVDDQVEGIYRLLMSDYTDPVNIGNPNEISILDFAKEIVRLTGSDQKIVFNPLPQ
                     DDPMQRQPDITVAREVLGWEPKVERAEGMEKTYAYFKGLTQEELYRSEHKDFSAHNRH
                     "
     gene            3319..4674
                     /locus_tag="DHV98_05930"
     CDS             3319..4674
                     /locus_tag="DHV98_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003443715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HCK05895.1"
                     /translation="MIYKTGRYSGFLRPISYAIDLAIIHLLAAPFFEQRFVFLNYVLF
                     VSFAWIAIALRSNFYEIYRFTRTTNILSLGLKQGALFLLLVFAFFGFYREIKASPWDI
                     LRYVIEVMALITLTKIAIYYLLKKYRILLKGNLRRVVIVGLNQKTDQLRKFFEEKPEY
                     GYVLLKTFNLSGNEAYSLEQCLEYIDNNQIDEIYASVAQLDNATMNQLIDYADNNLKI
                     LKFLPDNKDIYSKRLDFTYYGYLPIISMRKIPIDEPFNKFVKRSFDVVLAIFIIVCIL
                     SWLTPILGLIIKLESKGPIFFKQKRNGLDYKEFYCYKFRSMRPNPEAHLYQISKNDPR
                     VTRIGKIIRKTSIDELPQFINVLKGEMSAVGPRPHMVSHTHMYAEKIDKFMVRHFIKP
                     GITGLAQVSGFRGEVEDDNHIINRVKYDIFYLENWSLLLDIKIVFQTIYNALRGEEKA
                     Y"
     gene            4678..5826
                     /locus_tag="DHV98_05935"
     CDS             4678..5826
                     /locus_tag="DHV98_05935"
                     /inference="COORDINATES: protein motif:HMM:PF00535.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05896.1"
                     /translation="MSDKRVSIIMPAYNNGAFIGAAIESVLAQTHAHWELLIVDDASS
                     DDTLAQAEQFQTKDQRIRVFVMAENQGASFCRNYATKKSTGDFIAFLDADDLWAPEKL
                     ERQLAFMQAHDLGVSFTAYKQVDLQGNDRGIVILSLTELSAAKQKTNNFIGNLTGMYA
                     VERVGRLMAPEMRKRQDWALWHKAITVSGGPAKGMAETLASYRVSPGSMSSRKWGLIQ
                     HNFAFYHQYLGYSWIKSCLWLLVFFAIYFFERPRYIKKTRVPEQTSQLWRVRDRSLVP
                     LGQIANIVANQGVCFIVERSQNHPPMGPRLRRLPKIINQLKINRGLVDLQSTLSIGHC
                     DHAKFTRAIFVNDRYAQGQLKHGFVFRKKHFTGNNAAFKAGTDLFEHD"
     gene            6678..7949
                     /locus_tag="DHV98_05940"
     CDS             6678..7949
                     /locus_tag="DHV98_05940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002988443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HCK05897.1"
                     /translation="MNILVLGSGGREHTFTHQIAKSPQCNALFVAPGNAGTARIATNL
                     KISVTDFQSIKAAVLTHNIEMVVVGPEDPLVQGIYDFFKGDAQLSQVMIIGPSAAAAA
                     LEGSKERAKEFMSAHGIPTAAYASFTRETLAQGKAFLETLNPPYVLKADGLAAGKGVL
                     ILKDLDEAKTELEAMLAHAKFGAASAKVVIEEFLDGIELSVFVLTDGQNYKVLPTAKD
                     YKRIGEGDQGLNTGGMGAISPVPFATSEFMEKIETRIVKPTVDGIKKEGLIYQGFIFI
                     GLIKVGDDPFVIEYNVRMGDPETEVVLPRIETDLLELLEATARGKLDSVTLRVTPQSA
                     ATIMAVSGGYPQAYEKGKPIHGLDQVEQGMVFHAGTGFDAEQVVTSGGRVLAATSLDA
                     DFRQAIKKSYQTLSKISFDKMYYRKDIGFDL"
     assembly_gap    8007..8116
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8117..8300)
                     /locus_tag="DHV98_05945"
     CDS             complement(<8117..8300)
                     /locus_tag="DHV98_05945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HCK05898.1"
                     /translation="MTWKGFFEGIESLADALLLTPLDAVREFELSNWWGANLMTWVFI
                     GIFFVAFYYWMKQLAQF"
     gene            8341..9282
                     /locus_tag="DHV98_05950"
     CDS             8341..9282
                     /locus_tag="DHV98_05950"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05899.1"
                     /translation="MLTSFFGNSKSINYILLAAALPLVLGLRYWIVFSHLPTFIQAGA
                     LIGQCGLLIFSMLLLDFVIRKNKLTQPNTYGLWWFFCGIIAGVEPGNFLQALVLTLSL
                     LSLRRIMSLTNEQNLEKKIFDAALWIFIVSVFYPWFLWMILALYMAVAQLNPIAWRHY
                     LIPLFSALSLWLIYAGATALFPEIGTAIQGGDALVRIELEPLNWSWPQPIWLQSGLAA
                     GVLLLVTTLVRLPLAYKEGTTMRQGHFQWVWRVLILVLVLAGFSVDQKTEVFLWLVLP
                     LSSILYANSLELKQPSLLREFLAFLPLAMPLAQLLLK"
     gene            9309..9917
                     /locus_tag="DHV98_05955"
     CDS             9309..9917
                     /locus_tag="DHV98_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009421254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05900.1"
                     /translation="MFTQNALEIFEKVITDYHIKDDPYQSFENPYDPKAEVLNHLLYR
                     KCWIDTVQWHYEDIIRDPQIEPVAALTLKRQIDASNQDRTDMVEYIDSYFLEQYKEVT
                     PKNSATINTESPAWGVDRLSILALKIYHMRQETLRYDASAAHKTACQTKLDVLLEQRH
                     DLSTAIEQLLKDIASGDKYMKVYKQMKMYNDDELNPVLRGQK"
     gene            9966..>10439
                     /locus_tag="DHV98_05960"
     CDS             9966..>10439
                     /locus_tag="DHV98_05960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HCK05901.1"
                     /translation="MGDVAMLFPVLRAVLSQNEIEITLLTRPQFAPIFSSIPRLKVQA
                     VDLKNNYKGPLGLWRLAREIKALNPDCFLDLHDVLRTKILRRYLRFLGVSSSTFDKGR
                     AEKKQRVAHFDSSLPWLKSTHQRYAEGLEALGLKVRLDLGEKAIDLDKSVLQKRSP"
BASE COUNT         2698 a         2378 c         2490 g         2763 t
ORIGIN      
        1 cgggacaata gaaccctaat gcacggggtc atttattctt cggtggcggc cgcgatttat
       61 tctttggtgc gcctggtgat tttactcaat caaggcgcga gttttgggtt tttagaatcg
      121 gcgcacatca tcgaggcgct gcttatggac cgtatttatc tcggattact ttcggtgctg
      181 agcatcatct tttcgtataa acttttgcgt aaagagttcg accccaataa tggctattac
      241 ctagccaata tcatcctaca agcggcgttt atcctgtttt tggtgtcgcg gatcgcgatc
      301 gtcgtattgc ttttaagttt tgtcttgagc ttgtggtatc gtcaaaaacg cggtccacag
      361 ctcctgtttt ttggcgggtc gatcaccttg attgtggcct tggcatttgt cttgagcaat
      421 gacttgcgca aacagttttt ctacaacaat aatccggagc atcaggaagg gctgctggcc
      481 aatacgatgg ctttagaacc gcgcatggtc atctgggatt gtgcccttga tctggcccta
      541 cagcagtctg tagcggtcac cggcaatggc tttacccaaa ccaatttaga catgctcact
      601 tgttatgaaa gtgacatcga taacccgata aaaaaatcct ggtttttgac caaaaaatac
      661 aatgtacaca atcagttttt ggatctttat ttggggagtg gtctgctcgc aatgatgctg
      721 tttgccgcag gattgatcgc tagttttttc aagcatagaa gatcactcta ccctagtgcg
      781 ctagtcatgg cggcagtgat ttttctcatg gcagaaaata tgtttcatcg tcaaatcggg
      841 gcttactatg tggggcttat ttgggcctta ctgatgtttt tgcccaaaga ccacagcacc
      901 gaaaaacctg aaaaacaaga ataaaacaat agcaaaaccc tcaggcataa cgtatttttg
      961 tgccgctaca aagaaaaaag aaataaaaca aataagataa ctcatgaaaa ttaccgtagt
     1021 aggaacagga tatgtagggc tcgtgactgg aacgtgtttg gccgaaacag gcaatgaagt
     1081 tttgtgcgtg gatatcgacc aagctaaagt ggacatgatg caggcgggca aagtgccgat
     1141 ttatgaaccc caccttgatg tcttgtttga acgcaacatt aaagcaggcc gcctcacctt
     1201 tacgacggac ttacaccaag gcttagacca cggagaaatt atctttttgg ccttacccac
     1261 ccccgaagat gaagacggct cagccgattt gtcctatgtc cttggggttg ctgataagat
     1321 tggccgttac atcacgagtt acaaagtgat tgttgacaaa agtacagtgc ctgtagggac
     1381 tgcagaaaaa gtgacccaag tcatcagcgc caatgcaaag tgcgactttg atgtagtttc
     1441 taatcctgaa tttttgcgcg aaggctttgc tgtagacgat ttcttaaaac cagagcggat
     1501 tgtcgttgga tcctcaagtg agcgggccac ggcactcatg caaaaactct atgccccttt
     1561 tgtgcgctca ggcaatccgg tgattgtgat ggatgaaaaa tccgcggagc ttacaaaata
     1621 tgccgccaat tcatttttgg cggctaagat tacctttatg aacgaagtgg ccaattattg
     1681 tgaaatggtc ggcgcagacg tcgataaagt acgtgtaggg atgggcaccg acagccgtat
     1741 tggcaaacgc tttttattcc ccggcattgg ttatggcgga tcatgcttcc ctaaagacgt
     1801 caaggccctt cagaaggccg gccgcgatgc gggctatgag tttaaaattc tcgacgccgt
     1861 aattggggtg aaccagagtc aaaaaaccat acaaatccct aaaatattgg ctcattttgg
     1921 tcaggacctc aagggcaaaa agatcgctat ttgggggctc gcgtttaaac cagaaacgga
     1981 tgatattcgt gaggcacctg cgatcgatgt gatccatgcg cttttggacc acggagccac
     2041 agtggaagct ttcgatcccg aggccatgga caatatccgc aagcgttttg gggagcgcat
     2101 tagttttggg ggccatatgt acgcgccgct tcaagatgcc gatgcactgg tgatttgtac
     2161 cgaatggagc atatttagat cacccaattt tgaaaaggtc aaagatctgc tcaagcagcc
     2221 cgtaattttt gatggaagaa acttgtacaa cacccaagac atggagcgcg aaggctttag
     2281 ctacacctct ataggtcgca atacggtaca accatgagca gcgataacaa gggtgaaacg
     2341 gttttaatca ctggggccgc aggatttctg gggtctcatc tctgtgatcg ttttatcgca
     2401 gaaggctttc gcgtgatcgg catggacaac ctaatcacag gcgaccttaa aaacattgag
     2461 cacctttttg gtcttgagca atttactttt tgccatcacg atgtaacgac ttttgttcac
     2521 gtgccgggac ccgtggatta tattttgcac tttgcctccc cagcgagtcc cattgattac
     2581 ctcaaaatcc cgatacagac ccttaaagtg gggtctttag gcacgcataa tttattgggt
     2641 ctggccaaag aaaaaaaggc acggattctg atcgcctcga cctctgaggt ttatggagac
     2701 ccattggtcc acccgcagaa ggagatgtat tatggcaacg tgaacaccat agggccccgc
     2761 ggggtctacg acgaggccaa gcgctttcaa gaatccatca ccatggcgta tcacaggttc
     2821 cacggtttag acacgcgtat tgtgcgcatt tttaatacct acggtccccg aatgcgtctc
     2881 aatgacggac gagtcattcc agcctttatg ggccaggcgt tgcgcggaga ggacatcacg
     2941 gtatttggcg acggaagtca aacgcgctcc ttttgttatg tagacgatca ggtcgaaggg
     3001 atttaccgac tgctgatgag cgactatacc gatcctgtaa acattgggaa tcctaatgaa
     3061 attagcatct tggactttgc caaagagatc gttcgcctta ccggctcaga ccaaaaaatc
     3121 gtttttaacc cactcccaca agatgatccg atgcagcgtc aaccggacat caccgtggcg
     3181 cgagaggtgt tgggctggga acccaaagta gagcgcgctg agggtatgga aaaaacctac
     3241 gcttacttta agggactgac ccaggaagaa ttataccgca gtgaacacaa agatttttcg
     3301 gcacataatc gccactaaat gatttataaa acaggacgat actcggggtt tttaaggccg
     3361 atttcttatg cgatcgactt ggcaattatt catttgcttg ccgccccttt ttttgagcag
     3421 cgttttgtct ttttaaatta tgttcttttt gtttcttttg cttggatcgc gattgcgctg
     3481 aggtctaact tctatgaaat ctatcgcttt accaggacta cgaatatcct ttcattaggc
     3541 ctcaaacaag gcgccctctt cttgctattg gtctttgctt ttttcggctt ttacagagaa
     3601 ataaaggcct cgccttggga tattttgcgt tacgtgattg aggtgatggc cctgattacc
     3661 ctcaccaaga ttgccattta ttatttactc aagaaatacc gcattctcct caaaggaaac
     3721 ctgcgccggg tcgtgattgt agggctgaat cagaagacgg atcagttgcg taaatttttt
     3781 gaggaaaaac cggaatacgg ctatgtactg ctcaagacct tcaatttgtc gggcaatgag
     3841 gcctacagtc tcgaacaatg cctagagtac atcgacaaca atcaaataga tgaaatttac
     3901 gcctcggtgg cacagctgga caatgcgacg atgaatcagc tcatcgacta tgcggacaac
     3961 aacctgaaaa ttttaaaatt cctcccagac aataaagaca tttacagcaa gcggctggac
     4021 ttcacttatt acggatattt gcccattatt tccatgcgta agattccgat cgatgagccg
     4081 tttaacaaat ttgtcaaaag gagttttgat gtggttttgg ccatttttat catcgtctgt
     4141 attctttcgt ggctcacccc aattttgggt ctgatcatca aactggagtc caaaggcccg
     4201 atctttttta agcaaaagcg caatggatta gactacaagg aattttactg ttacaagttc
     4261 cgctcgatgc gcccgaatcc agaggcccac ttatatcaga tttcaaaaaa tgatcctcga
     4321 gtgacgcgta tcggcaagat tattcgcaaa accagtatcg atgagttgcc ccagtttatc
     4381 aacgtgctca aaggagaaat gtctgcggta ggcccacggc cacatatggt cagccacacc
     4441 catatgtacg ctgaaaaaat agacaagttt atggtgcggc actttattaa gcccggcatc
     4501 acaggcttag cacaggtcag cggattccgc ggcgaggttg aagacgataa tcatattatt
     4561 aatcgcgtga aatacgacat tttctattta gaaaactggt ccttgttgct cgacatcaag
     4621 attgtattcc aaaccatcta caacgccctt cgcggggaag agaaagccta ttgatttatg
     4681 agcgataagc gtgtgtccat tataatgccc gcctataaca acggagcgtt cattggcgct
     4741 gcgattgaaa gtgtattggc gcaaacccat gcgcactggg aactgctcat tgtcgatgac
     4801 gcctcgagtg acgatacttt agcccaggca gaacaatttc agacaaaaga tcagagaatt
     4861 agggtctttg tcatggccga aaaccaaggc gcatccttct gtcgtaacta tgccacaaaa
     4921 aaatcgaccg gggattttat cgcttttcta gatgcagatg acctttgggc gcccgaaaaa
     4981 ttagagcgac aactggcctt tatgcaagcg cacgacctcg gggttagttt tacagcctac
     5041 aaacaagttg accttcaggg taatgaccga ggcattgtga ttctgtctct gaccgaactt
     5101 agcgcggcca agcaaaaaac caataatttt attggcaatc tcacagggat gtatgctgtg
     5161 gaacgggttg ggcggcttat ggctcctgag atgcgcaagc gtcaggattg ggcgctttgg
     5221 cacaaagcga tcacagtcag cggggggcct gccaaaggga tggccgaaac cctggcctca
     5281 taccgggtaa gcccagggtc aatgagcagt agaaaatggg gcctgattca gcacaacttt
     5341 gccttttacc accaatacct ggggtattcc tggattaagt cttgtctttg gttgctggtg
     5401 ttttttgcga tctatttttt tgagcgccca cggtatatta aaaagacgag ggttcccgag
     5461 cagaccagcc agctttggcg cgtgcgggac agatccctcg tcccactggg ccaaatcgcc
     5521 aatatcgtag cgaatcaggg cgtgtgcttt attgtggagc gcagtcagaa tcacccgccc
     5581 atgggtcccc ggctccgccg gctgcccaaa atcatcaacc agctcaagat aaacagaggt
     5641 ttggttgatc tccagagcac cctcagcatt ggccattgcg atcacgccaa gttcactcgc
     5701 gccatattcg ttaatgaccg gtacgcccaa ggccagctca agcatggttt tgtcttcagg
     5761 aaaaagcatt tcactggtaa caatgcagcc tttaaggctg ggacagacct ctttgagcac
     5821 gattgatttt tgggtcaaat attgacccaa acgcacaatt gacgaggtgt atccgttaag
     5881 atagccaaaa ggactttttt taaagcgcgt gagcatgagc tcgagcttgg cgtcagagag
     5941 atcaaaaatg accatgcgct gccgacgggc taagcagtcc tttaaacgct ccttttgacg
     6001 cgcccacccc tgcagaggaa ttccgtaaaa gcgtgcttct agatccaccc ccagctgaat
     6061 gccccacttc gcgtaaagct gtttaatttc tgcccagctg tacgcatggg cataacggtc
     6121 tttgacaaag acaaaggggt gtccgctgct tccagaggtt ttgtgcttgt gcgtgttttt
     6181 tgcgttatat cctgcggcat agcgctcgga aagcgggcgc tgaagatcgc cttttgtcat
     6241 aatgggcaag cgggaccaaa gcgcctcaag gtcttctgaa aggagagtct caacagcctc
     6301 tgtgccgttt agtgcctctt tttgcgggaa cccaccctgg agatgatcca gcacgagttt
     6361 tcgataataa ggcgagtgtt ctaggtggtg ccgcactatg gctttgcgct gattctcgat
     6421 ccattccacc aattgattcg caggcaagct gctgaatcga agatgatcgc gctctgcttt
     6481 tttaatggga aatccattgg caactagtgt tctttcgaac caactcatga gcttgcttta
     6541 atccctgcaa aataagcatt taatttcgct tgctcctaaa gggaaattct aaagcgaaac
     6601 ctttattttt gtgctcataa cacggggggt cagcggaaca aagccttatt aaagcgtccc
     6661 gatacaacat acaacagatg aatattttag tcctaggttc tggtggacgg gaacacacct
     6721 ttacccatca aatcgccaaa agcccccagt gtaacgccct atttgtggca ccaggaaacg
     6781 cagggaccgc ccgaattgcg acgaatctca agatcagcgt gactgatttt caaagcatta
     6841 aggcggcggt attgacccat aatattgaaa tggttgtggt aggccctgag gacccacttg
     6901 ttcaaggcat ttatgatttt tttaaagggg acgctcagct ttcacaggtc atgattatcg
     6961 gcccatcagc agcggcagcg gctctagagg gcagtaaaga gcgcgccaaa gagtttatgt
     7021 cggcccacgg cattcccacg gcagcatacg cgagttttac ccgagagact ttggctcaag
     7081 gaaaggcgtt tttagagacc ttaaatcctc cttatgtcct gaaggctgat ggactcgctg
     7141 cgggcaaagg cgtcttaatt ctaaaggatt tggacgaggc caaaaccgag ttagaggcca
     7201 tgctggctca tgctaaattt ggggcagcca gtgccaaagt ggttattgaa gaatttttag
     7261 acggtatcga actcagtgta tttgtcttga ccgatggaca gaattacaaa gtactgccca
     7321 cagccaaaga ttacaaacgt attggtgagg gggatcaagg actcaatacc ggcggtatgg
     7381 gggctatttc acccgtgcct tttgcgacgt ctgagtttat ggaaaaaatc gagacgcgta
     7441 ttgtaaaacc taccgtcgat gggatcaaaa aagagggcct tatctatcaa gggtttatct
     7501 ttatcggtct gatcaaagtc ggggacgacc cttttgttat tgagtacaac gtccgcatgg
     7561 gcgatcctga aacagaggtg gtgcttcccc gcattgaaac cgacctcttg gaattgctgg
     7621 aggccacagc acgcggaaaa ctcgacagcg tgaccttaag ggtgacccca caatcggcag
     7681 cgaccattat ggcggtgtct ggagggtatc ctcaggccta cgaaaaaggc aagcccattc
     7741 acggtttaga ccaggtggaa caaggaatgg tatttcacgc ggggacgggt tttgatgccg
     7801 agcaggtggt gaccagcggg ggacgcgttt tggcggccac ctctttggat gcagatttca
     7861 gacaggccat aaaaaaatct taccaaacat tgagtaaaat ctcgtttgat aagatgtatt
     7921 atcgaaagga tatcggtttt gacctctaag agtcgccgag ataggaatga gccgtttgac
     7981 tgcggtcctc ttctcctcgt tcattannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8101 nnnnnnnnnn nnnnnntgaa ttgggccaat tgtttcatcc aataatagaa ggcgacaaaa
     8161 aagatcccaa taaacaccca agtcatgagg tttgcgcccc accaattgct caattcgaat
     8221 tcacgaacag cgtcaagtgg cgtaagcaaa agtgcgtctg ccaaagattc aatgccttca
     8281 aaaaaacctt tccaagtcat aagtcttata tttagacgac aaaaatagag aatagggctt
     8341 atgttgacaa gcttttttgg gaattctaaa tcgattaatt acatcctttt ggccgcagcc
     8401 ttacccttgg ttttgggctt gcgctattgg atcgtgtttt cacacctgcc gacctttatc
     8461 caggcgggag cgctcattgg ccaatgcggt cttttgattt tttcaatgtt actgcttgat
     8521 tttgtcatta gaaaaaacaa attgacccaa ccaaacactt atggattgtg gtggtttttc
     8581 tgtggaatta tcgctggtgt cgaacccgga aacttccttc aggcccttgt tttgaccctt
     8641 tctttacttt ctctacgccg cattatgagc ttgacgaatg agcaaaactt ggaaaagaaa
     8701 atttttgatg ccgccctttg gatttttatt gtctccgttt tttacccgtg gtttctttgg
     8761 atgattctgg ccctgtacat ggccgtggcg caactcaatc caatcgcttg gcgtcattat
     8821 ttaattcccc ttttttctgc cttgagtctt tggttaattt acgcaggggc cacggcctta
     8881 ttccctgaga tcggcacggc aattcaaggg ggggatgcat tggtgcgtat tgagcttgaa
     8941 ccccttaatt ggtcatggcc acagccgatt tggctgcaat cgggtttggc tgcaggggtg
     9001 ttattgcttg tgaccaccct agtgcgcctg cccttggcct acaaagaagg cacaaccatg
     9061 cgtcaaggac attttcaatg ggtttggcgc gttttgattt tggtgttggt gcttgcgggc
     9121 ttttctgtcg accaaaaaac agaagtgttt ctgtggctgg ttttgccgtt gagctcaatt
     9181 ctctatgcca atagcttaga actcaaacaa cccagcttat tgcgcgagtt tttggccttt
     9241 ttgcctttgg caatgccctt ggcgcaactc ctgttaaaat aaagtatctt tgtggcaaag
     9301 atgtgcttat gtttacccaa aatgccctag aaattttcga aaaagtcatt acggattacc
     9361 atatcaagga cgacccttat caatcttttg aaaacccata cgacccaaaa gcagaggttt
     9421 tgaatcactt gctctatcgt aaatgctgga ttgacacagt ccaatggcat tatgaagata
     9481 ttattagaga ccctcaaata gagcctgttg cggctttgac cctcaagcga caaattgatg
     9541 cctccaatca agaccgcacc gatatggttg aatatattga cagttatttt ttggagcaat
     9601 acaaggaagt aacgccaaag aattccgcga cgataaacac ggagagtccg gcgtgggggg
     9661 tcgaccgatt gtcgattttg gccctcaaaa tttatcacat gcgccaggag actttgcgtt
     9721 atgatgcgag tgcggcgcat aaaaccgcat gtcaaaccaa acttgatgtg cttttggagc
     9781 aacgtcacga tttgagtacc gctattgagc agctcttaaa ggacattgcc tctggtgaca
     9841 aatacatgaa agtgtacaag cagatgaaaa tgtataacga cgacgagcta aaccctgtgc
     9901 tgcgcggtca aaaataattc gtgagcaagc gtccgcgaca tattgccgta gtgcgatttt
     9961 cggccatggg cgatgtggcc atgttgtttc cggtgctgcg cgctgtattg tcgcaaaacg
    10021 agatagaaat taccctgctc acgcgacccc aatttgcgcc tatcttttct tcgattcctc
    10081 gactcaaagt acaggcggta gatctcaaga ataattataa aggcccttta ggtctttggc
    10141 gacttgcacg tgaaataaaa gccttgaatc cagactgttt tttggacttg cacgatgtct
    10201 tacgcaccaa aatactgagg cgctatttgc gatttttggg cgtgagctcc agtacctttg
    10261 acaaagggcg ggctgagaaa aaacagcgcg ttgcgcattt tgactcaagc cttccttggc
    10321 ttaagagcac ccatcagcgc tatgctgagg gccttgaagc cttaggactc aaggtccggc
    10381 tcgacctagg ggagaaagcc attgacctag ataaatcagt cctccaaaag cgcagtccg
//
LOCUS       DPUP01000163            3575 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15756,
            whole genome shotgun sequence.
ACCESSION   DPUP01000163 DPUP01000000
VERSION     DPUP01000163.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3575)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     assembly_gap    164..450
                     /estimated_length=287
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            451..520
                     /locus_tag="DHV98_05965"
     tRNA            451..520
                     /locus_tag="DHV98_05965"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:478..480,aa:Lys,seq:ttt)
     gene            566..652
                     /locus_tag="DHV98_05970"
     tRNA            566..652
                     /locus_tag="DHV98_05970"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:600..602,aa:Leu,seq:gag)
     gene            623..829
                     /locus_tag="DHV98_05975"
     CDS             623..829
                     /locus_tag="DHV98_05975"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05902.1"
                     /translation="MWVRVPFSVQKPLLQGGFFCPPENAPHWVQYQAELSGFILFIVL
                     TKKLNKIYESALFFVIFQKKLNGG"
     gene            819..1727
                     /locus_tag="DHV98_05980"
     CDS             819..1727
                     /locus_tag="DHV98_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HCK05903.1"
                     /translation="MAVKTEFSIKDLENLSGVKAHTIRIWEKRYALLEPNRTDTNIRN
                     YDMSNLTKLLNATFLYRQGFKISKIAELQQDEIERLITESEIDQTNHYALHLFKQAMF
                     EFDHHLFNKTYKKLAKKESFDFIFFDLFMPLLNEIGLLWQTGTIDPVHERFISELIKQ
                     KIIENIVQAQEAMDIETSPSFALFLPYEEIHEVGLLYANFILLSEGHQTLYLGSNIPM
                     DNLKHLTKHYSDITFFSYFTVKPDDHNVDKYVKDFYKQVKPASNYPLWLMGHKIQDIA
                     AGELGKNIQIIHRLKALRNFVKSQKS"
     gene            1767..3154
                     /locus_tag="DHV98_05985"
                     /pseudo
     CDS             1767..3154
                     /locus_tag="DHV98_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007807749.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene desaturase"
     gene            3154..>3575
                     /locus_tag="DHV98_05990"
     CDS             3154..>3575
                     /locus_tag="DHV98_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene synthase"
                     /protein_id="HCK05904.1"
                     /translation="MKALFDDISQSCSKNVTKTYSTSFSLATKMLAPCIRQDIYNVYG
                     FVRLADEIVDSFHDYDKKALFVRFEKALEEALTEKISLNPILNAFQYTVYKYGIDQAL
                     IDAFMNSMRLDLTKSEYTTREEYQAYIYGSADVVGLMCL"
BASE COUNT          981 a          692 c          655 g          954 t
ORIGIN      
        1 ctcgcttaga cggtatattt tacgaagaaa ttttttcaaa gaatttagtt tgaattatcg
       61 acttaatgat attatatttg cagccgctaa gcctttattg gtacggagca ctggcgggta
      121 atctgacccg ccaaaaattt ttaatgacct ggtagctcag ttgnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gtagctcagt tggtagagca cctccctttt
      481 aaggaggtgg tcctgggttc gagccccagc caggtcacca tctaaagtcg atatttttat
      541 cgactttttg gtttaaacaa gacctaccga gatgctggaa ctggtagaca ggcatggttg
      601 agggccatgt gtccattagg gcgtgtgggt tcgagtccca ttctcggtac aaaagccact
      661 cttgcagggt ggcttttttt gtccacctga gaatgccccc cactgggtcc aatatcaagc
      721 cgaactttct ggttttattt tgtttatagt tttgaccaaa aaactaaaca aaatttatga
      781 gtcagcccta ttttttgtta tctttcaaaa aaaattgaat ggcggttaaa acagaattta
      841 gcattaaaga tctggaaaac ctgagtggcg tgaaggcgca taccatacgt atatgggaaa
      901 agcgttatgc acttctagaa ccgaatcgta cggacaccaa catccgtaat tatgacatga
      961 gcaatcttac caaattgctt aatgccacct tcttgtatcg acaaggattc aaaatttcca
     1021 aaatagcgga attacaacaa gatgaaattg agcgtttgat tactgagtct gaaattgatc
     1081 agacgaatca ttacgcgctc catttattca aacaggcgat gtttgaattt gaccatcact
     1141 tgtttaacaa gacctataaa aaactggcaa aaaaagagag ttttgatttc atcttttttg
     1201 acctttttat gcccttgctc aatgaaatcg gtctgctttg gcaaacaggc acgattgacc
     1261 ctgtgcatga gcgattcatt tcggaattga ttaaacagaa aatcattgag aatatagtcc
     1321 aagcccaaga agctatggac atagaaactt ctccaagttt tgcgcttttc cttccctatg
     1381 aagaaattca tgaggttgga ctcctctatg ccaatttcat tcttttgagt gagggacacc
     1441 aaaccttata tcttgggagt aacattccca tggataattt aaaacactta accaagcatt
     1501 acagcgacat tacttttttc tcttatttca cggtaaaacc tgatgatcac aatgttgaca
     1561 aatatgtcaa agatttttac aagcaggtta aaccagcgag taactatcct ttgtggctta
     1621 tgggacacaa aatacaagac attgctgcgg gtgaactcgg aaaaaatatc cagataatcc
     1681 atagactcaa ggcgttgcgc aactttgtaa aaagccaaaa atcttgagtt aattccccta
     1741 cttagaaata aagcattcat cctatcatgc aacaatcaat agctgtaatc ggctccggat
     1801 tttcctcact cgccgcagcg tgctaccttg ccaaagccgg tcataacgtg acggtttttg
     1861 aaaaaaacaa aacctttggc ggtcgtgcca ggcaacttaa aaaagacggc tttacatttg
     1921 atataggccc tacttggtac tggatgcctg atgtttttga acgctttttt ggagactttg
     1981 gaaagaaacc tcaagactat tacgagctca ttaaactcag cccggcctat tcggtttatt
     2041 tcggaaaaga tcaggccata accattgccg actctctaga aaaaattaaa gaaacttttg
     2101 aacagcacga aaagggcggt gcagcgaaac ttcaaaaatt tattgatgcg gctctggaca
     2161 attacaatat tgcgataaag gatttagttt atcgcccagg aatttcacct cttgaactaa
     2221 tcacccctaa gaccgcgatg aaagtcggtc aatttttcag taccatctca cgtgatgtcc
     2281 gcgcagcgtt taaaaacccg catttggtcg cgattttaga atttccagtg ctctttcttg
     2341 gcgcaaaacc ttcaaatact cccgccttct ataactttat gaattacgcg gactttgggc
     2401 tcggtacctt tcacccgaaa aatggtatgt acagtgtggt tcagggcatg gttgatcttg
     2461 cnnnnnnata aacggaacaa cgctgtcctt tgacaaagtg ctcagtggcg ctgattatca
     2521 tcatacagaa acattgttgc caaaaaatta ccgccaatat tctcaggcgt attggtcaaa
     2581 gaggactttt gccccctctt ctctgctgtt ttatgtcggc tttgaaaaac agattcaaaa
     2641 cgtagagcac catactttat tttttgatgt cccttttgaa aagcacgcgg aaagcatata
     2701 cgacgatccc aaatggccag aggagccttt gttttacgca agttttccct caaaaacgga
     2761 cgacagcgct gctccggaag gtaaggaggc tgggatcttt ctcattcccc ttgctgtggg
     2821 aattcaggac acccccgaac ttcgtgaaat ctactttgaa aaaatcatga cccgctttga
     2881 atttctcact ggtcaaagcg tgaaaaaaag tattatcttt aaggaaagtt tttgtctcaa
     2941 cgactttatc aacgactata attcctacaa aggaaacgct tatggtctgg caaatacact
     3001 gatgcagacg gcgtttttga gacctaaatt gaagagtaga aaagttgatg gcctcttttt
     3061 cacaggacaa ttaacggttc ctggacctgg ggtaccccca tcactgatct caggaaaaat
     3121 tgtttcagga cttatggatc aaagtataaa ataatgaaag ccttatttga cgatatatca
     3181 caatcgtgca gtaagaatgt gaccaaaacc tacagcacgt cgttttcctt ggccactaaa
     3241 atgcttgcgc cgtgtatcag acaggacatt tataatgttt atggctttgt tcgtctggct
     3301 gacgagattg tcgattcctt tcacgattat gacaaaaaag cactttttgt gcgttttgaa
     3361 aaagccctgg aagaagcgct aacagaaaaa attagtctaa atcccattct caatgctttc
     3421 caatacacgg tttacaaata cgggatcgat caagcgctta tcgacgcctt tatgaacagc
     3481 atgcgtttgg atcttactaa aagtgaatac accacacgag aagaatatca ggcgtatatc
     3541 tacggatctg ccgatgtggt aggcttaatg tgtct
//
LOCUS       DPUP01000164            3179 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_20963,
            whole genome shotgun sequence.
ACCESSION   DPUP01000164 DPUP01000000
VERSION     DPUP01000164.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3179)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3179)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3179
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>305
                     /locus_tag="DHV98_05995"
     CDS             <1..>305
                     /locus_tag="DHV98_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007430611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucosidase/alpha-galactosidase"
                     /protein_id="HCK05905.1"
                     /translation="DVCSSDLEIAKRMEKICPDAWFLNYTNPLTKICEAINRLTSIKF
                     VGLCHGILAGKHQLSQFLEMNEEDLEVKASGLNHITWFQSIKDKNTGEDLYPKLKSR"
     assembly_gap    306..454
                     /estimated_length=149
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <455..1135
                     /locus_tag="DHV98_06000"
     CDS             <455..1135
                     /locus_tag="DHV98_06000"
                     /inference="COORDINATES: protein motif:HMM:PF11975.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HCK05906.1"
                     /translation="AHWLAEWDEIALSRMLMRTYGLYPSPGANHIVEYIRWAGDFLAS
                     DKVQFFYDPNDGHPWETGKIPTWIYSLQGNPTQVPLYPEKDINLVFELGKGDNREIKF
                     SREYAIPIIEGLSCGAHNSIDAVNVPNNNFMPGIEQGAIVEVPAIVNENGLLPQKAER
                     LPEGVLAILRTQVSINQLLIEAFAENSKNKLLQAILLEPTVNSYNNAVSCMNEMIALQ
                     KEYLPELK"
     gene            1204..>1709
                     /locus_tag="DHV98_06005"
     CDS             1204..>1709
                     /locus_tag="DHV98_06005"
                     /inference="COORDINATES: protein motif:HMM:PF02585.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05907.1"
                     /translation="MKKMNIPTVQRKYDSRLTPFLIIFQIALLFLPNTTIAQDSNKGK
                     TLLAVFAHPDDEITLGTILNKYSEEGVKVYLVVATDGRFGTNDRTKHVAGDDLAALRR
                     EEMQCSADKLGVELIHLKYQDQLKSAEGYDGHMPHIQALMKDIYNIIERIQPDAIVTF
                     GPDGWSNH"
     assembly_gap    1710..1849
                     /estimated_length=140
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1850..2125
                     /locus_tag="DHV98_06010"
     CDS             <1850..2125
                     /locus_tag="DHV98_06010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05908.1"
                     /translation="INLFFVGRPSNLIVDPERKILAGQDVGYLTTKVSYSEKNRDAFI
                     HALACHKSQFGEDGLEQMTKRRNNDDEKVVYLRKFVGPTENSNSVFN"
     gene            2122..>2769
                     /locus_tag="DHV98_06015"
     CDS             2122..>2769
                     /locus_tag="DHV98_06015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05909.1"
                     /translation="MKNMVTNTRLVFQITLYFILFILFFVFGGCNDGTSEKKNGESSI
                     LFESVTVIDAKFGERQNLNVLISGNKIIKVSDRPIENSSNCKVINGKGKYLIPGLWDA
                     HVHITFTPGLEQAMFPLFLGNGITSIRDTGGLITEVLPWKEKSLQEPNSSPRLFIAGP
                     LLDGHPNVYDGSPGRPEISVDLSSEKEAIEMVNYLASSGVDLIKSYEMLSPEMFMT"
     assembly_gap    2770..2919
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          902 a          515 c          566 g          757 t
ORIGIN      
        1 agacgtgtgc tcttccgatc tggaaatcgc caaaagaatg gaaaaaatat gtcctgatgc
       61 ctggtttttg aactatacca accctttaac taagatatgc gaggctatta accggctaac
      121 ttctataaaa tttgttgggc tttgccatgg tatattggcc ggaaaacatc agctatcaca
      181 gtttctcgaa atgaacgagg aagacctcga ggtaaaagca tcgggactca accacattac
      241 atggtttcaa tctataaaag acaaaaatac tggtgaagat ctgtatccta aattaaagtc
      301 acgtgnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngcacat tggctagcag aatgggacga
      481 gatagcattg agcagaatgt taatgagaac ctatggcttg tatccctctc caggagcaaa
      541 tcatatagta gaatatataa ggtgggcagg ggatttcttg gcaagtgaca aagttcaatt
      601 cttttatgac cctaatgatg gccatccttg ggaaacagga aaaattccaa cttggatcta
      661 tagtttacaa ggtaatccaa cacaagtacc actttatcct gaaaaagata tcaatctggt
      721 ctttgaactc ggaaaaggag ataatcgtga aatcaagttt tccagagaat atgccattcc
      781 catcatagaa gggctttcgt gtggtgccca taattctatt gatgccgtta acgtacccaa
      841 taataatttt atgccaggca tcgaacaagg agccatagtt gaagtccctg caatagtaaa
      901 cgaaaatggt ctcttaccac aaaaggcaga acgcttaccc gaaggagtcc ttgctatttt
      961 gcgaacacag gtaagtatca atcaactact tattgaggca tttgccgaaa attcaaagaa
     1021 caaactctta caggcaattc ttttggagcc gactgtaaac tcttataata atgcagttag
     1081 ttgtatgaac gaaatgatcg ccttacaaaa agagtactta cctgaattaa aataggaaga
     1141 gatatattat accaataaaa tgattgcatc acatgtataa ttttaaccga aaatatagta
     1201 atcatgaaaa aaatgaatat tccaacagta caaagaaaat atgattcacg attgactccg
     1261 tttcttatta tatttcaaat tgccctgctt tttttaccga atacaacaat tgcgcaagat
     1321 tcgaataagg gtaaaacatt attggcggtg ttcgcacatc ctgatgacga aattaccctt
     1381 ggcaccattc tcaataaata ttcagaagaa ggcgtcaagg tttatttggt ggttgcaacc
     1441 gatgggcgct ttggcactaa cgatcgcacg aaacatgttg caggagatga cctagcggca
     1501 ttaagaaggg aagaaatgca atgttcggca gataaattgg gtgttgagct tattcatcta
     1561 aaatatcaag atcagctcaa gtcagccgaa ggttacgacg gccatatgcc acatatacag
     1621 gcattaatga aagatattta caatatcata gaaagaattc aacccgatgc catcgttacc
     1681 tttggtccag atggttggtc gaaccacatn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna taaacctatt
     1861 ctttgtcggc agaccttcaa atcttatagt agatccagaa cgaaaaattc tagcgggaca
     1921 agacgttggc tatttgacca ccaaggtttc gtattcagag aagaatagag atgcctttat
     1981 ccatgcactc gcttgccaca agagtcaatt tggagaggat ggcttagagc aaatgacgaa
     2041 aagaaggaac aacgacgacg aaaaagtagt ctatttaaga aaatttgtcg ggcctaccga
     2101 aaattccaat tccgttttta attgaaaaat atggtcacaa acactaggtt agtattccag
     2161 atcaccctct attttatatt atttatccta ttttttgttt ttggaggatg taacgatgga
     2221 acatccgaaa agaagaatgg tgaatcttcc attttatttg aatcggttac tgtcatcgat
     2281 gctaagtttg gcgaaagaca gaatctcaat gtgcttattt caggaaataa aattataaaa
     2341 gtttctgaca ggcccattga aaattcttca aattgtaaag taataaacgg caaaggaaag
     2401 tatttgattc ccggtctatg ggatgcccat gtacatataa cctttactcc cggtcttgag
     2461 caagccatgt ttcccctctt tttgggcaat ggcattacga gtattcgcga tacgggtggt
     2521 ctaattactg aagtattgcc gtggaaagaa aaatcgcttc aagaacctaa cagttcccct
     2581 cgattattta tcgctggacc tttattggat ggccacccca atgtatatga tggtagtcct
     2641 gggaggccgg aaatctcagt ggacctgagc tcagaaaagg aagctataga aatggtcaat
     2701 tacttggcgt cctctggcgt agatttaata aagtcgtacg aaatgttaag tccagaaatg
     2761 ttcatgaccn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt taagtgtcga tgtaatcgaa
     2941 gcgagtgaag cgggcctcag aagtatggaa catttacgga acctagaaat gtcatgctct
     3001 tctgattttg actctctttt acaggccaga aaacagatgt tggccaaagg aaaggatgat
     3061 ttaggtggcg cgttgaggtc agaaatccat tcctcacagc gtatgcacgc atttaggacc
     3121 tttgatgagc aaagagcatc caaagtattg tcggccttag aaaaaaacaa tacttggca
//
LOCUS       DPUP01000165            3692 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2371,
            whole genome shotgun sequence.
ACCESSION   DPUP01000165 DPUP01000000
VERSION     DPUP01000165.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3692)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3692)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3692
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..570
                     /locus_tag="DHV98_06020"
     CDS             <1..570
                     /locus_tag="DHV98_06020"
                     /inference="COORDINATES: protein motif:HMM:PF01520.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HCK05910.1"
                     /translation="VRQDVFWVLHHSYMPSVLIELGFLTNNSEGPYLNSKNGRKEMAQ
                     EIARSILEYKTEIDFANQNQVTIPELTQGQNSESENAQNERISASSAQGSTGNTQPGA
                     SKNEVLFKVQIAASSKKLETKSYNFKGLAQISRSKEGTLYRYYYGETSDYTQAQRLQS
                     EARASGYAQAYIVAFKENERVSLSEVLNN"
     gene            660..>1441
                     /locus_tag="DHV98_06025"
     CDS             660..>1441
                     /locus_tag="DHV98_06025"
                     /inference="COORDINATES: protein motif:HMM:PF02470.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05911.1"
                     /translation="MRYSREIKTGVFAVVSILLFILGYQYLKNSKLFQVSREFYVVYE
                     NVVGLEAGAPVTINGMRVGKVKNLALANKAGDGVLVTFLLENDFEFPKSSVVKIYASG
                     IIGGNNLAIVPAVGDPIMSRAGDTLRGELESGMIDGLIEKFSPIEKSLLSSLTKVDSV
                     LSDIDQVLDARSKQHLRQSMESLSVAMEQLSQTATGLNVLVDRNQNELDAAFKSILKT
                     STNLETITDSIASVNTAQMLKDLSGSISALNQITNSMAQGEG"
     assembly_gap    1442..1533
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1534..1724
                     /locus_tag="DHV98_06030"
     CDS             <1534..1724
                     /locus_tag="DHV98_06030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HCK05912.1"
                     /translation="QGEGSLGALIQDDGLYQDLRTLTEDAQNLLKDIKSQPKRYVHFS
                     LFGRKDDTQEHQPNKKDN"
     gene            1724..3004
                     /locus_tag="DHV98_06035"
     CDS             1724..3004
                     /locus_tag="DHV98_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013551849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S oxidoreductase"
                     /protein_id="HCK05913.1"
                     /translation="MGAWPSLSQVIFAVIFAVGVGYFIYNMRRLIALIKKGRPVGPLD
                     HKKERWRNVLYIALGQSKLVKRPVSGIMHVLVYLGFVIINIEVLEIVIDGLFGTHRIF
                     QFLGPTYGVLIGLFEILAVLVFIAVIVFWLRRNALKLKRFWSPEMKGWPKTDANLILY
                     FEMVLMGLFLMMNATDFSFQQMNQGNWVSGSIYALIQNWPEAQLHMIERFCWWAHIIG
                     ILGFLNYLYFSKHLHILLAFPNVYYGRINPPGQFENLDSVTKEVKLMMDPSADPYATP
                     PEGTVPEKFGASDVTDLTQVQLLNAMTCTECGRCTSECPANQTGKLLSPRKIMMDTRD
                     RLMALPKEGENKQLLDDYITREELWACTTCNACIEACPVSIDPVSIIMSMRQYLVMEQ
                     SAAPSELNATMSNIENNAAPWPFNQQDRGNWINE"
     gene            3017..3448
                     /locus_tag="DHV98_06040"
     CDS             3017..3448
                     /locus_tag="DHV98_06040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoheptose isomerase"
                     /protein_id="HCK05914.1"
                     /translation="MSKNQDHLLNKKEEYGQTISPVLPEGIKNYLIDIDGTICDDIPN
                     EEPERMATAEVYPDALKTLNRWYEQGHIICFFTSRTEDHRKVTEDWLAHHGFNYHSLL
                     MGKPRGGNYHWIDNHLVKATRYNGKFTDLVEKEVAIQVFND"
     gene            3459..>3692
                     /locus_tag="DHV98_06045"
     CDS             3459..>3692
                     /locus_tag="DHV98_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008240456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase"
                     /protein_id="HCK05915.1"
                     /translation="MEKALNVPTMAECQAQGKLTEVLFWVGCAGSFDDRAKKITKAFA
                     KLLQASGVSFAVLGAEEGCTGDPAKRSGNEFLFQ"
BASE COUNT         1057 a          698 c          841 g         1004 t
ORIGIN      
        1 gtacgtcagg atgttttttg ggtgttgcac cactcctata tgcctagtgt cttaatcgag
       61 ctcggttttc tgaccaacaa cagcgaaggc ccttatttga attctaaaaa tgggcgaaaa
      121 gaaatggctc aagaaatcgc gcgcagtatc ctggagtaca aaactgaaat tgattttgcc
      181 aatcaaaatc aagtcaccat tcctgagcta actcagggcc aaaattctga atcagagaac
      241 gctcaaaatg agcgcatatc cgcatcctct gcacagggca gtacaggcaa cacccaacca
      301 ggggcctcta aaaatgaggt gctctttaaa gtacagattg cggcgagcag taaaaaacta
      361 gagacaaaat cttataactt taaagggctc gctcagatca gtcgatcgaa agaagggacc
      421 ttgtatcgct attattatgg cgaaacctca gattatactc aggcacagcg cttgcaaagc
      481 gaggctcggg ccagtggata cgctcaggcg tacatcgtgg cgttcaaaga aaatgagcgt
      541 gtatccctgt cagaagtttt aaacaattaa tcgtgaataa actgccaatt tttggctgtt
      601 ttgatcggcg tgcatcgatg aataatcctt aaatttgttg gtaacctaaa tccaaagcat
      661 tgcgctattc aagagaaata aaaacaggtg tttttgcagt cgtttccatt ttgttgttca
      721 ttttggggta tcagtacttg aaaaactcaa aactctttca agtctcgagg gagttttatg
      781 tcgtttatga gaatgtagtc ggtcttgagg caggagcacc agtgacaatc aatgggatgc
      841 gggtaggtaa agttaaaaac cttgctttgg cgaacaaagc gggggatggg gttttggtta
      901 cttttttact tgaaaatgat tttgaattcc caaaaagcag tgtggtcaag atttatgcct
      961 cgggcattat tgggggaaat aatttagcga tagttcccgc ggtgggtgat cccatcatgt
     1021 cacgggctgg ggataccttg cggggagagc ttgaatcggg tatgattgat gggctgattg
     1081 agaagttttc accgatcgaa aaaagtctgc tttcaagttt aacaaaagta gattctgtgc
     1141 tctcagacat cgatcaagtt ttggatgcac gatcaaaaca acacttgcgt cagagcatgg
     1201 agagtttaag tgtcgctatg gagcaactca gtcaaacagc tacgggctta aatgtgcttg
     1261 tggatcgcaa tcaaaatgaa ctcgatgccg ccttcaaaag tattttgaag acctcgacca
     1321 atttagagac gattaccgat tctatcgctt cagtcaacac agcgcaaatg cttaaagatc
     1381 tctctggatc gatcagtgct ttaaaccaga ttaccaattc gatggctcaa ggggaaggaa
     1441 gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnctcaagg agaaggaagc ctaggagctt
     1561 taattcagga tgatggtttg tatcaagatt taagaaccct cacagaggat gcccaaaatt
     1621 tgcttaagga catcaagagt caaccaaagc gctatgttca tttttcgctt tttgggcgaa
     1681 aggatgatac ccaggaacac caacccaaca aaaaggataa ttaatgggcg cttggccaag
     1741 tctttctcag gtcatttttg ccgtaatttt tgcggtgggt gtagggtatt ttatctataa
     1801 catgcgtcgg cttattgcat tgattaaaaa aggacgtcct gtaggccctt tagatcacaa
     1861 aaaagagcgt tggcgcaatg tgctctatat cgctttaggt caatctaaac tggtcaaacg
     1921 tcctgtatca gggataatgc atgttttggt ctatttaggg tttgtcatca tcaatattga
     1981 agtgctcgag attgtcatcg atggtttgtt tggaacccac cgaatatttc aattcctcgg
     2041 gccgacttac ggcgtactca ttggtctttt cgaaatattg gcggttttgg tttttatagc
     2101 cgtaattgtt ttttggttgc gtcgtaatgc attgaaatta aaacgttttt ggtccccgga
     2161 gatgaagggc tggccaaaaa cagacgccaa cctaattttg tattttgaga tggtgctcat
     2221 gggcctgttt ctgatgatga atgcgactga ttttagtttt cagcaaatga atcaggggaa
     2281 ttgggtctcg gggtcaattt atgcgctcat tcagaattgg cctgaagcgc aactccatat
     2341 gatcgaacgc ttttgttggt gggcgcatat tatcggaatc ttaggctttt tgaattatct
     2401 ctacttttcg aaacacttgc atattctctt ggcttttccc aatgtttatt atgggcgtat
     2461 aaaccctcca ggtcaatttg aaaatctcga ttcggttacc aaagaagtta aattgatgat
     2521 ggatccgtca gccgatcctt atgccacgcc acctgaaggg acggttccag aaaaatttgg
     2581 ggccagtgac gtgactgatt tgactcaggt tcaattgctc aatgccatga cctgtactga
     2641 atgtgggcga tgtacgagtg aatgcccggc caaccaaacc ggtaaattat tatcgcccag
     2701 aaaaataatg atggacacgc gtgatcgtct tatggcgctg cccaaggaag gggaaaataa
     2761 acaacttctt gacgactata ttacgcgcga agaactatgg gcgtgtacta cttgtaatgc
     2821 atgtattgaa gcctgtccgg tcagtattga cccggtatcg attatcatgt cgatgcgtca
     2881 atatttagtc atggaacaat ctgcagcacc gtctgagctg aacgcaacca tgagtaacat
     2941 agaaaataac gcagcgcctt ggccttttaa tcaacaagac cgcggcaatt ggattaatga
     3001 ataagaccat aaaaaaatga gcaagaacca agatcattta ttaaacaaaa aagaagaata
     3061 cgggcaaacc ataagtccgg tattgcctga aggaattaaa aattatttga tcgatatcga
     3121 tgggactatt tgcgatgata tacccaatga agaaccggag cgtatggcca ctgcagaggt
     3181 ttacccggat gcgctaaaaa cacttaatcg ttggtacgaa caaggacaca tcatttgttt
     3241 ctttacctct cgaacagaag atcacagaaa agtaactgaa gattggctcg ctcatcacgg
     3301 atttaactat cacagtttgt taatgggcaa acctcgtggt ggaaattatc attggattga
     3361 taatcatttg gttaaagcta cccgttacaa cggaaagttt accgatctcg tagaaaaaga
     3421 agtagccatt caagtattca acgattaacc taagcgttat ggaaaaggca ttaaacgtac
     3481 ccactatggc tgaatgccaa gcacaaggca aacttacaga agttttgttt tgggtgggct
     3541 gtgcgggtag ttttgatgac cgggccaaaa aaataactaa ggcctttgcc aaattattgc
     3601 aggccagcgg ggtttcattt gctgttttgg gcgcagagga aggctgtaca ggagatcctg
     3661 ccaaacgatc tggaaatgaa tttttatttc ag
//
LOCUS       DPUP01000166           15659 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7205,
            whole genome shotgun sequence.
ACCESSION   DPUP01000166 DPUP01000000
VERSION     DPUP01000166.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15659)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15659)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15659
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..460)
                     /locus_tag="DHV98_06050"
     CDS             complement(<1..460)
                     /locus_tag="DHV98_06050"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05916.1"
                     /translation="MVQPWYIKTRQFIGNYLGHPLFMPLYAYGFYCLAAHSEHQLKGN
                     WVDFIVIFLLLVAFPLMIYPILRKGNKVQSIHLKNVHERIWPLGINLVLWFSIIYYFT
                     LITPVFQAAEGNNALALMAFFLGGAVRILTAMIMAILSHKSSLHMMGISGL"
     gene            complement(466..1923)
                     /gene="rpoN"
                     /locus_tag="DHV98_06055"
     CDS             complement(466..1923)
                     /gene="rpoN"
                     /locus_tag="DHV98_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma-54 factor"
                     /protein_id="HCK05917.1"
                     /translation="MLKQQFQLKLSQKLSPQQIQLMKLIQLPTQAFEQRVAQELEENP
                     ALEGGKEQSDSEDYQEDPYDTYNQEGTEIIETDINVDNYLSDDEIPSYKLSANNYSAD
                     DQERETPYASGTSFYQYLTEQLNTYQLSDEQMQMALFLIGSLDDSGYLRRSIDDLVDD
                     LAFTQNIYTDHDTLLDVLHLVQDLDPAGVGARNLQECLVLQLERKTASSAAQKALVMV
                     QEHFDAFSKKHYDKLIQRLGWDEEALKNAIHEIAILNPKPGSTYSGQNRLIETVVPDF
                     SIRIEDASLALTLNGRNAPELHVSRSYSEMLKGYKETVQHSKAQKDAVMFIKQKLDAA
                     QWFIDAIKQRQHTLYVTMSAIMNRQKDYFLSGDERQLRPMILKDIADEIGMDISTVSR
                     VANSKYVDTPYGTKLIKEFFSESMKNDQGEDVSTREIKTILASMIEEEDKRRPLTDDK
                     LAQVLKDKGYPIARRTVAKYREQLDVPVARLRKVL"
     gene            complement(2006..3448)
                     /locus_tag="DHV98_06060"
     CDS             complement(2006..3448)
                     /locus_tag="DHV98_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010230251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HCK05918.1"
                     /translation="MQEHVISHILAMDPSINPVTVSGWVRAFRSNRFIQINDGSTLHN
                     LQCVVDFESFDAELLKSITVGAAIKISGPLVASQGQGQTIEIQVQSIDILGIADPEEI
                     KLTILSPKRHSLETLREQAHLRVRTNTFGAVMRLRSKLAFAVHQYFQNNGFNYMHTPI
                     ITGSDAEGAGEMFRVSSLSAGNAPKNEDGQVDFSQDFFGKETHLTVSGQLEAETYAMG
                     LGKVYTFGPTFRAENSNTSRHLAEFWMIEPEVAFNDLHDNMDLAEDFIKFVVRYALEH
                     CSDDLDFLEKRLLEEDKAKPQDQRSPMPLKEKLNFVLEHNFMRVSYTEAIDILKNSKP
                     NKKKKFQYPIEEWGADLQSEHERYLVEKHFECPVILYDYPAKIKAFYMRLNDDGKTVR
                     AMDVLFPGIGEIVGGSQREERYDVLKQKMLAMDIDPEELYWYLDLRKFGSCVHSGFGL
                     GFERLVQFVTGMGNIRDVIPYPRTPGSAHF"
     gene            complement(3479..5965)
                     /locus_tag="DHV98_06065"
                     /pseudo
     CDS             complement(3479..5965)
                     /locus_tag="DHV98_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269594.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
     assembly_gap    5541..5606
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6168..>6396)
                     /locus_tag="DHV98_06070"
     CDS             complement(6168..>6396)
                     /locus_tag="DHV98_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell envelope biogenesis protein OmpA"
                     /protein_id="HCK05919.1"
                     /translation="VESHSDTQGNADYNRALSDRRAQATVQYVIDQGIDASRISGQGF
                     GEDQPVVNCGDNCTEEDHEKNRRSEFIIVNE"
     assembly_gap    6397..6579
                     /estimated_length=183
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6580..8236)
                     /locus_tag="DHV98_06075"
     CDS             complement(<6580..8236)
                     /locus_tag="DHV98_06075"
                     /inference="COORDINATES: protein motif:HMM:PF07676.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope biogenesis protein OmpA"
                     /protein_id="HCK05920.1"
                     /translation="MLNFNSIKMKNIITLLLCLTFVIGSAQDKDTKKADELYQGMAYA
                     DAAEAYLKLLKRGKGSRYVFEQLGYCYYQINDLKGAATYFKRVVKGRKVNPEVFYTYA
                     QVLKASGNLSEHDMYMNKFAAEKPEDSRAKAFLDNPMAIAEMLKAFPAFDAKNMSDIN
                     TEFSEFGGTLAGKDFYFTSSRNTSRKKYHWDDQPFLDVYKAELVGNTIKNAKILEGDV
                     NTKYHEGGVALSADGKRLYFDRNDYLDGKYVKDENGVNQINLYYSELVDGGWKGVYPV
                     PFNNSEYSVGHPALSPDGKTLYFVSDMPGGFGASDLYQVSLNEDGSFGTPENLGSGIN
                     TGGKELFPSLDSNGTLYFASNGHMGLGGLDVFKADAQNDGFGMVQNLGNGANSAGDDF
                     AFIYNPETKSGFVSSNREGGKGMDDIYQVTPKVPPCDVTIDVLVVNAYTDEPLFGARV
                     SLGDGSSERLSTIQTSESGTGQLMGACNTPLTVSAQYAGFEPTTIDVPASGNGSMNKT
                     LKLKPVEAIIVDDKIELETILFDYNKSDIKPQAAFELDRLVEIM"
     gene            complement(8236..9138)
                     /locus_tag="DHV98_06080"
     CDS             complement(8236..9138)
                     /locus_tag="DHV98_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007136638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05921.1"
                     /translation="MKKLAIAILLISLTASAQQDPQYTQYMYNMNVVNPAYAGLKESL
                     SVTTLFRQQWSGLEGAPTTFTLSGHAPVNDKVGLGLSAIKDELGPVKETNVMVDFSYT
                     LQMSEQLKLALGIKAGATFHDVGLTSLEIQDPNDPFFAVDINNTYPNVGAGAFLYSDN
                     YYFGLSVPNMLNSVHLDENGLQYGSEVNHYFVTAGYVFQVNDNIKLKPSTMIKSAFGA
                     PTSIDLNLNALFLEKFEIGTSYRTEDSFSGLLGFQVAPFLRIGYAYDHVMSELSAVAS
                     ASHEVVITFDLISNPKTLRSPRYF"
     gene            complement(9171..10028)
                     /locus_tag="DHV98_06085"
     CDS             complement(9171..10028)
                     /locus_tag="DHV98_06085"
                     /inference="COORDINATES: protein motif:HMM:PF13585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05922.1"
                     /translation="MAAGGYSVTVALEPCDATTIGFVAVRYEQPMFDLGGDTCAGPDT
                     ILDATPDNYALDDVSFVWLLDGEQIAGADQATYNPTTAGSYTVIVSVGDCAGEQSVLV
                     GPELDLALTEECLPDAGSLKQTLVAATNSNVGSFQWSDENGVDIPGATSSTLIIDWST
                     QTSGEPSTFTVTLSEGDCSNSKSITVTQFNCVIPQGISPNGDDLNDCFDLEFIADRFG
                     AFSIDIYNRYGTNVFSQDNYVNEFCGVDQDGSDLITGTYYYVIKFTEPNDEYGEVVTG
                     WVYVNQTAN"
     assembly_gap    10071..10180
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10181..13023)
                     /locus_tag="DHV98_06090"
     CDS             complement(<10181..13023)
                     /locus_tag="DHV98_06090"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05923.1"
                     /translation="MNTSSSLRWKKSLMALALIWSASLFTQAQNVDCSAGPVNTTYCY
                     GNNDNTQFAFQSNTGLPLIIYFNTGQVESSFDEVIILDSDGVTDLNAATPYGNGGDLT
                     GLTYTSSGDSLTVIIQSDGSISCQSSGFTPWDFDVYCSTCTNPTVLFDTLGDCETNNQ
                     FFVSADFTDLGTGLSYLVTDNQGSPGQTITALGTYLFGPYASLTNVILTVANDSDPNC
                     VLESPSLTFFCIDEGTCSLLDAGDDVSTECSGPCVDLEAELLAVPGRGTTSYQIQGPF
                     CDLPPLTGGTPTNLLIDDRWSFPIPMGFDFEYFGNTYNQLVMGANGQISFDLSLADQY
                     NGWSMDPADQIPNTEPNFPLNTIYGAFHDLNPAIDPDPARMNYYVTGDAPYRVFVMNV
                     FEMPHFGSTCAGFFTTQQILLYESLNVIDVNLIDKPACPDWNDGLAAVGLIGNNSNEY
                     SVPLTRNTGFWEATNETWRFVPNGAPSSSFSFEWRDETGAVIGTDLAITVCPQVETTY
                     TAVSIFETPGGTTETITDDVVVTPSSNAGFTADLGPDQVVCDTPTVSLFPELDGISAS
                     EVTFLWNTGATTQNLNVTSSGVYTVEIEGNGCTVIESVEVVFLTSPCTIEPQCEDIDF
                     QETFGTGTGLSCNLNGATTTYTCYTGGQIEDGEYAISNTSAGFNTGWHPSMEDHTEGD
                     TNGRMLFVNADIPVGEFYRRTISLNVNTDYSFSAWITTVYDTDSFICQGNSVPSNVRF
                     RIEDMMGNIIEETVTGDIANGPDPDWQEFFISFNTGANNDIQLVLINNAPGGCGNDLA
                     IDDITLSYLNSTPEIVAPADLGTCDTTGSGQGVFDLTSVIPEVLNGQSPNNFNITFHL
                     SQLEAEVNLNAIAFPTAYTNTSNPETVFVRVEKALEPLCFAVVDFDLVVNPSVNFDIS
                     IPAVVSVCEGDPFPELDATPQNPNIDLNFVSYT"
     gene            13130..14338
                     /gene="hflX"
                     /locus_tag="DHV98_06095"
     CDS             13130..14338
                     /gene="hflX"
                     /locus_tag="DHV98_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HCK05924.1"
                     /translation="MLEKQEIQYEKVILVGLITKDQDEIKSAEYLDELAFLAYTAGGQ
                     VARRFTQKLDVPNPKTFIGTGKMEEVKIYIDENEVTTAIFDDELSPAQQKNIEKILQV
                     KIIDRTNLILDIFAQRATTSYARTQVELAQYEYLLPRLAGMWTHLERQRGGIGMRGPG
                     ETEIETDRRIVRDRIALLKKKIKSIDRQMGVQRSNRGALVRVALVGYTNVGKSTLMNV
                     ISKSEVFAENKLFATLDTTVRKVVIGNLPFLLSDTVGFIRKLPTQLIESFKSTLDEVR
                     EADLLLHVVDIAHPSFEDHVNSVNQILDEIDSKDKPTLMVFNKIDAYTPEPWDPEDLT
                     QEKTAQHNSIEEWKNTWMARTNGDALFISALEKDNLSEFRKVVYDKVREIHITRFPYN
                     NFLYPEEFNE"
     gene            complement(14386..15372)
                     /locus_tag="DHV98_06100"
     CDS             complement(14386..15372)
                     /locus_tag="DHV98_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05925.1"
                     /translation="MIARYPTKAAFRRLLRFFNFKTGLIFLLINSVVPAIWGQEPQEK
                     VETVWTESAVTTFLFNQAAFNKEWQGGGISNVAGNVTLTYNLNYNKNGVNWDTKVTAE
                     YGAAKIQAQDNLQKTNDRVEVISVVGKKIRNSRWFYSGLFNFKTQFDSGFEASERTEI
                     VNGVSVKISSDVRNSKFFSPANFLLGPGILWKKEEDLKLNIAPSTGRLIVVASQFTNP
                     NDPRNRLDEDDEYFGVASGETTRFELGMALNGYAKIELLPNVALENILGLYSNYLEKP
                     KNVDIDYTANLSMRVNNLITTNVAFQAIYDDNAVQGFQIRQALGVGITYTLK"
     gene            complement(15378..>15659)
                     /locus_tag="DHV98_06105"
     CDS             complement(15378..>15659)
                     /locus_tag="DHV98_06105"
                     /inference="COORDINATES: protein motif:HMM:PF10652.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05926.1"
                     /translation="VPAWAYQLVATTLSAYANKVLVCDKVSFNLILWVDHIAEMDLSP
                     YQNGLVLLKGCSDEKIPPSAYAILAQRLTPVVKKLMFGEACSFVPLHKN"
BASE COUNT         4298 a         3302 c         3354 g         4346 t
ORIGIN      
        1 ctaaacccga aatccccatc atatgcaagc tacttttatg acttaaaata gccatgatca
       61 ttgccgttaa aatacggact gcccccccga gaaagaacgc catcagagcc agggcgttgt
      121 taccttcggc cgcctgaaac accggagtga ttagcgtaaa ataataaatg atactgaacc
      181 aaagcacgag attgatgccc aagggccaaa tacgttcatg gacatttttt aagtgaatac
      241 tttgaacctt attccccttc cgtaaaatag gatagatcat taggggaaac gccacaagca
      301 ataaaaaaat tacaataaaa tccacccaat tacctttaag ctgatgttcg ctatgagccg
      361 ccaaacaata aaacccataa gcgtataggg gcataaacag cggatgccct agataattcc
      421 cgataaattg acgtgtttta atataccaag gctggaccat ggggcttaca atacttttct
      481 caatcgagcc actgggacat cgagttgttc tcgatacttg gccacggtac gtcgggcaat
      541 ggggtaccct ttgtccttaa ggacttgggc taacttatca tcagtaaggg gccggcgttt
      601 gtcttcctct tcgatcatac tcgccaagat ggtcttaatc tctcgggttg agacatcttc
      661 cccttgatcg ttcttcatgg attcactaaa gaactcctta attaattttg tgccataagg
      721 ggtatcgaca tatttgctat tggccacgcg cgataccgta gagatatcca tcccaatctc
      781 atcggcgata tctttgagaa tcattggccg cagctggcgt tcgtcaccac tcaaaaaata
      841 atccttttgc cggttcatga tggcactcat ggttacataa agcgtgtgtt gtctttgttt
      901 aatcgcatca ataaaccact gagccgcatc aagtttttgc ttgataaaca ttaccgcatc
      961 cttttgcgct ttggagtgct gtacggtctc cttatagcct tttagcattt ccgaataact
     1021 gcgtgaaaca tgtaattctg gggcattacg tccgtttaag gtcaatgcta aactagcgtc
     1081 ttctattcgg atggaaaagt caggaaccac agtttcaatc aggcgatttt gtcctgaata
     1141 ggtgctgccc ggtttggggt tgagtatcgc aatttcgtga atggcgtttt taagcgcttc
     1201 ttcatcccag cccagtcgtt gaatgagttt gtcgtaatgt ttcttagaaa aggcgtcgaa
     1261 gtgctcttga accatcacaa gcgctttttg ggccgcagaa gaagccgttt tacgctctag
     1321 ttgtaggact aagcattctt gtaaattacg tgcgccaaca ccggcagggt ctaaatcttg
     1381 aactaagtgt aaaacatcta ataaggtatc gtggtcggta taaatgtttt gagtgaacgc
     1441 aagatcatcg accaggtcat caatactgcg cctgaggtaa ccactatcat ctagggaacc
     1501 aatcagaaac agggccattt gcatttgttc atccgagagc tgataagtgt tgagttgttc
     1561 agttaggtat tgataaaaag aagtcccaga ggcatagggc gtttctcttt cttgatcatc
     1621 ggcactataa ttgttggcac tgagcttata gctcggaatc tcatcatcac tgagataatt
     1681 atcgacattg atatcggtct ctatgatttc tgtaccctct tggttatagg tgtcataagg
     1741 atcctcttga taatcctctg aatcagactg ctcttttccc ccctctagcg ctggattttc
     1801 ttcgagttct tgggcaacgc gctgctcaaa agcttgagtc ggcaactgaa tcagcttcat
     1861 gagctgaatc tgctggggcg agagcttttg tgagagtttt aattgaaatt gctgtttgag
     1921 catatcgcta gggcattacc taaagttaac aaaaatacgg ttggcttgcg ccgatactca
     1981 aattatagcc aatttcgtgc caattctaaa aatgggcgct acctggggtg cgtggataag
     2041 gaatgacatc acgtatattt cccatgcccg taacaaattg aaccagtctt tcaaagccta
     2101 atccaaatcc actatggaca caactgccaa attttctaag atccagatac cagtagagtt
     2161 cttctgggtc gatgtccata gccaacattt tttgtttcag cacatcatag cgttcttcac
     2221 gttgagatcc gcctacgatt tcaccaatac cgggaaacag cacatccatg gcccgtaccg
     2281 ttttaccatc atcgttgagg cgcatataaa aggctttaat ttttgcagga taatcataca
     2341 agatcacggg acactcaaag tgcttctcaa ctaagtaacg ctcgtgttcg ctttgtaagt
     2401 ctgcgcccca ctcttcgatg ggatattgga actttttctt tttgttgggc ttggaattct
     2461 tcaaaatatc aatagcctca gtatagctta cacgcataaa attgtgctca agcacaaagt
     2521 ttaatttttc ttttaggggc ataggactgc gttgatcctg tggttttgcc ttatcttcct
     2581 ctaaaaggcg cttttctaaa aagtcgagat catcactaca gtgctccagg gcatagcgta
     2641 cgacaaattt gataaagtcc tctgccaaat ccatgttgtc gtgtaagtca ttaaaggcga
     2701 cttccggttc gatcatccaa aactcagcta aatggcgcga ggtattagag ttttcagcgc
     2761 gaaaggtcgg gccaaaggta tagaccttgc ccagtcccat ggcataggtc tcagcttcga
     2821 gttgtccgct aaccgttaag tgggtttctt taccaaagaa atcttggctg aagtccacct
     2881 gaccgtcttc attttttggt gcatttccgg ccgacaaact acttacacga aacatttcac
     2941 cagcgccttc cgcgtcactg cccgtgatga tcggggtgtg catatagttg aatccgttgt
     3001 tttgaaaata ctgatgtacc gcaaaagcca gcttggacct taagcgcatt acagcgccaa
     3061 aagtattcgt gcgcacacga agatgggctt gttctcttag ggtttccaag ctatgtcgtt
     3121 ttggacttag aatggttaat ttaatttctt cggggtctgc aattcccaaa atatcgatgg
     3181 actgaacttg aatctctata gtttggcctt gcccttgact ggcgacgagg ggaccagaga
     3241 ttttaatggc ggcccctacg gtaattgact tgaggagttc tgcgtcgaag gattcaaaat
     3301 ctaccacaca ttgaaggttg tgcaaagtag acccatcatt aatctggata aatctattgc
     3361 tacgaaatgc gcgtacccaa cccgaaacag ttaccgggtt tatactaggg tccatggcta
     3421 aaatatgaga aattacgtgc tcttgcatgg gtataatcgt tataagggta aagataattt
     3481 atttcttcgg tctgtcctcg aattcttctt gagtcatggc ctttacttct tcatcggttt
     3541 cggtcaaaat ttctaatgcc ggcttgagaa gcgtttgctt attggcaata ctcctttcta
     3601 gtgaaagcag taaagagggc agtaaaagta aatttgcgag catggcaaat agaagcgtaa
     3661 tagaaacaag ggcccctaag gcaatagtcc ccccaaattc ggagatggta aatactgaaa
     3721 acccaaaaaa taagacgatg gaggtataaa acatactcac accagtttct cttaaggcca
     3781 agaaaacgga ttttttaatt ttccagccat gggcgatgag ttcttgacgg tacttggcca
     3841 aaaagtgaat ggtatcgtct actgaaatcc caaaagcaat actgaatact aagatggtag
     3901 aaggtttaat atctacaccg agaaatccca taagccctgc cgtgatgagc aagggcaaaa
     3961 tattcggaat taaagagata aggatcattt ttaagttacg aaacatccat gccataaata
     4021 aggcaatcag aaaaatggcc aatgacagag acaacaataa attgttgacc agatacttag
     4081 tgcctttctc aaaaataaag gcttttcctg ttatcgagat actgtaacga tcctccggga
     4141 atattttggt aatttcctgg cgcagatcct cttcaatccg ctcaaatcgt tcgagtttcg
     4201 tgtctattaa aaatgccgta attcgggcat attgtcccgt ggtgtctacg taactcgaaa
     4261 ggaggttcgt attttctgca ccgctttggg cataggagag gataaaggag cgctcttggt
     4321 tattggggag ttgaaaatat tcaggattgt tgttgtaata ggcctgtttg gaatacttga
     4381 ctaagttcac aattgaaatg ggttgtgaga gttcaggaat atcgttgatg aactgttgca
     4441 aggattccat gcgctttagc gtcgctaaat tcatcactcc tttcttgcgt ttggtatcca
     4501 ctaaaatttc aaggggcatg atcccctcgt attccttttc aaaaaacttt atgtctttgt
     4561 aaaagcccat gcttttgggc atatcgtcga ttaaactgcc tgagagttta atttgaaaca
     4621 taccgataat actcatgcag agcataatga tcgagagcgc ataaatggcg attctgtgtt
     4681 cgcgaaccat aagctccatc caatcgacaa aacgaccgat ccatcgttta ttcaagtgtt
     4741 tgagatgctt gtactttggc accgccataa agctgtaaat aatcggaatg ataaaaagcg
     4801 ataacagaaa tatggcaata atattaatcg aggcaacaat accaaattct ttgagcaatt
     4861 tactgttggt caaaataaag gttccaaagc cagaggcagt ggtgagattg gtcatcaggg
     4921 tggcgtttcc cactttactg atcacccttt gcaaggattt ggcctggttg ccgtgccgtt
     4981 taatttcttg ttgatatttg ttgatcaaaa agatacaatt aggaatgccg ataacaataa
     5041 ttagcggtgg aataagcgcc gttaataccg tgatttcata atgcatcaat cccaagaaac
     5101 caaaagacca cattacgccg attaaaacag tcaccagtga gataaaggtc gcgcgatagg
     5161 agcggaagaa aaagaaaaag attagcgagg taatgagcat ggccgccccg ataaacaaac
     5221 tgatctcatc gacgatattt tttgaattga gggttctgat atacggcatt cccgaggtgt
     5281 gcacctcgat actcgtttgc gcttcaaagg cctcgatttt tgggatcaaa tcactgagaa
     5341 taaaatcccg acgggcaaag gtgttgacga tacttttgtc cagatataag gccgtccgta
     5401 cagagttttt cgcgggattg taaataagcc cctcatagaa cggtaattta ttgaaaagtt
     5461 catgcttata gcgcgctatg gtatttgggg taaatagagt atcgtcgata aatgggacga
     5521 gctcaaattc ctgtgcatct nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnagta atttttttaa atccccaacc gataggctta
     5641 gttcgacctc atcaaacgcc tgaagttctt gggaaagttt catccaagca ttaaagttct
     5701 ccggggtaaa aagggtactg tctttaaccc ctaaaacaat gaggtttcct tcttcaccaa
     5761 aaatatccaa gaactcattg tactccagat tgtagggatg atcatcgggc aataaattcg
     5821 cttcggtgta ggtaaagcgc atgtgttgcc actgagaggc catgaaaatg gtcaccagaa
     5881 caattgccga gagtatccca atacgattgc gtagtataaa acgggctacc gcgctccaaa
     5941 atcctatgct aaagagttta tccaatggct cagtttaacg tgcgcaaagg tataaaaatc
     6001 aaacccattg accttgagcg aggcagcgtt aaatttttga gaaaaaacta agggcggccc
     6061 gcagggccgc ccttagtttt aggggattat ttttatttta gtttgttgct ttgatcaggg
     6121 actttgctta atcgccaagc gctgaacagt ttgtcagcct tgaggcttta ttcatttacg
     6181 ataatgaact cagatcgacg gtttttctcg tgatcttctt cagtacagtt atcgccgcaa
     6241 ttcaccacag gttgatcttc accaaagcct tgtccgctga tacgagaagc atcgatacct
     6301 tggtcaatca cgtattgaac cgtagcttgt gcacgacgat cagaaagcgc tcggttgtaa
     6361 tcagcgttcc cttgggtatc tgagtggctt tctacgnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt catgatttcg accaagcgat
     6601 cgagttcaaa ggctgcttga ggtttgatat cgcttttgtt gtaatcaaat aaaatagttt
     6661 caagctcgat tttatcgtca acaattatgg cctcaacagg ctttaatttt aaggtcttgt
     6721 tcatacttcc gttgccactt gcaggcacat cgatcgtggt gggctcaaat ccggcgtact
     6781 gtgcagaaac agtaaggggc gtattgcaag cgcccataag ttggcctgtt cccgattctg
     6841 atgtttgaat ggtgctcaag cgctcagagc tgccgtctcc taaactcacc cgtgcgccaa
     6901 atagaggttc atcggtataa gcattgacga ccaatacatc aatggtcaca tcacaaggcg
     6961 gcacttttgg cgttacttgg taaatgtcgt ccattccttt tcctccttcg cgatttgagg
     7021 acacaaaacc tgatttagtt tctggattat aaatgaaggc aaaatcatca ccagcactgt
     7081 tggcaccatt acctaggttt tgtaccattc caaatccatc attttgtgcg tcggctttga
     7141 acacatcaag tccgcctaga cccatatggc cattactggc aaaatacagg gttccgttac
     7201 tgtctaatga agggaatagt tctttgcccc cagtgttgat accactacct aagttttcag
     7261 gagtgccaaa acttccatct tcgttaaggg atacttgata caggtctgaa gcgccgaagc
     7321 caccaggcat gtcacttaca aaataaagtg ttttaccgtc tggacttagt gcaggatgcc
     7381 ctacagagta ttccgaatta ttaaagggca ctggatagac gcctttccaa ccaccatcga
     7441 caagttcaga ataatacaaa ttaatttgat ttaccccatt ttcatctttg acgtacttac
     7501 cgtctaaata gtcattgcga tcaaaataca aacgcttacc atctgcggat agcgccacgc
     7561 ccccttcatg atatttggtg ttgacatccc cttctaagat tttggcattt ttaatggtat
     7621 tgccaacaag ttctgctttg taaacatcta aaaatggctg atcatcccaa tgatattttt
     7681 tgcgtgaagt attgcgtgat gaggtgaaat aaaaatcttt tccggccaaa gtcccgccaa
     7741 attcagaaaa ttcggtgttg atgtcgctca tatttttggc atcaaaagca gggaaggctt
     7801 tgagcatttc agcgatagcc attggattgt ctaaaaaggc ttttgcccgc gaatcctccg
     7861 gtttttcagc ggcaaattta ttcatataca tatcgtgctc actgaggtta ccactggctt
     7921 taaggacctg agcataggtg tagaacacct cagggtttac ttttcggcct ttgaccaccc
     7981 gcttaaaata ggttgccgca cccttcaaat cattaatttg ataataacaa tagccgagtt
     8041 gttcaaaaac gtaacgactg cctttgccgc gctttaacaa tttcagatag gcctctgcag
     8101 catcagcata agccataccc tgatagagtt catccgcctt tttagtgtct ttatcttgtg
     8161 ctgacccgat aacaaaggtc aaacaaagga gtagagtgat aatatttttc attttaatgg
     8221 aattaaaatt tagcattaga agtagcgcgg agaacgcagt gtttttggat tagagatcag
     8281 gtcaaaagta atcaccactt cgtgtgaggc tgaagcgact gcactgagtt cactcatcac
     8341 gtggtcataa gcatatccga tgcgcaaaaa gggcgccact tgaaagccta agagtccgct
     8401 aaatgaatct tccgttctgt aagaggttcc gatttcaaac ttctcaagga ataaagcgtt
     8461 gaggttcaaa tcaattgagg ttggtgcccc aaacgcggat tttatcatcg tagaaggttt
     8521 caacttaata ttatcgttga cttgaaatac ataaccggcg gtcacaaagt agtgattgac
     8581 ttcgcttccg tattgtagtc cattttcatc aagatgtacg ctattgagca tattcggcac
     8641 cgataagcca aagtaatagt tgtcgctgta aagaaacgct ccagccccta cattgggata
     8701 ggtattgttg atgtctaccg caaaaaatgg atcattcggg tcttgaattt caagactggt
     8761 gaggcccaca tcatgaaatg ttgctccagc tttaatcccc agtgccaatt tcagttgctc
     8821 actcatttga agcgtgtaag agaaatcgac catgacattg gtctctttta ccggtcctaa
     8881 ttcatctttt attgcggaga gacctaagcc tactttatca ttcactggag catggccaga
     8941 aagggtaaag gtagtagggg ctccctcaag accagaccat tgttggcgaa atagagtcgt
     9001 taccgacaag gattctttca gtcctgcgta tgccggattc accacgttca tgttgtacat
     9061 gtattgggtg tactgcggat cttgctgagc cgaagcggtc agactgatca ggagtattgc
     9121 gatggctaat tttttcatta tgcttggtag ttatttctga ttgagtttga ttagttggcg
     9181 gtttgattta cataaaccca gccggtgacc acttctccgt attcgtcatt aggttcggta
     9241 aatttgatca catagtagta ggttccggta attagatcac ttccatcttg gtccacacca
     9301 cagaattcgt tgacataatt atcttgacta aagacattcg tgccatatcg gttgtagata
     9361 tcgatgctaa aagcaccaaa tctatcggcg atgaattcta aatcaaaaca gtcgtttagg
     9421 tcatccccgt ttggagaaat cccttgaggg ataacacaat taaactgtgt aacggtaatg
     9481 cttttgctgt tgctacagtc cccttctgaa agggttaccg taaatgtgct tggctctcca
     9541 ctggtctgag tgctccaatc aattatcagg gtactgcttg tggctcccgg tatatcgact
     9601 ccattttcat cagaccattg gaaactacct acattactgt ttgtggcagc gaccagggtt
     9661 tgttttaatg aacccgcatc agggagacat tcttctgtta atgctaaatc gagttcaggc
     9721 ccaacgagaa cactttgttc tccagcgcaa tccccgacac tcacaattac cgtatagctc
     9781 cctgcggttg ttggattgta cgtagcctgg tcggcccctg cgatttgctc gccgtcgagc
     9841 agccaaacaa agctgacatc gtctaaagcg taattatctg gggtggcatc caaaatggta
     9901 tctggtccgg cacaagtgtc tccccctaag tcgaacattg gttgctcata gcgcacggcg
     9961 acaaaaccaa tggtggtggc atcacaaggc tctaaagcaa cggtcactga ataccctcca
    10021 gcggccatag gggtgtagat aggatttgtg ctcaatacat tgccctgagc nnnnnnnnnn
    10081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn caggtataag acacaaagtt
    10201 caaatcaata tttggatttt gaggggtggc gtctaattct gggaatggat ctccttcaca
    10261 aacactcaca acagcaggaa tactgatgtc aaaattaacg gaaggattga ccactaaatc
    10321 aaaatcgaca acggcaaaac aaagcggctc taaagccttt tctacgcgaa caaatacagt
    10381 ctcaggattt gaagtattgg tgtaggctgt tggaaaggca atggcattta ggttaacttc
    10441 tgcctccagc tgacttaggt ggaacgtgat gttaaagttg tttggagact gcccatttaa
    10501 tacctctgga ataactgaag tcaaatcgaa gactccttgg ccacttcctg tcgtgtcaca
    10561 agtcccaaga tctgcagggg caacgatttc aggggtacta tttaggtaag ataacgtgat
    10621 gtcatcgatg gcgaggtcat tcccacatcc accaggggcg ttgttgatga gcaccaattg
    10681 gatgtcattg ttggctccgg tattaaaaga aataaagaac tcttgccaat ctggatctgg
    10741 accattagca atatcacccg tgacggtttc ctctatgata ttgcccatca tatcttcaat
    10801 gcggaatcga acattagagg gaacactgtt tccttgacag ataaacgagt ctgtgtcata
    10861 tacggtagtg atccaggcac taaatgaata gtcggtgttc acatttagag aaatcgtacg
    10921 gcgataaaat tcgcctacag ggatgtccgc attgacaaat aacattcttc cgtttgtatc
    10981 gccttctgta tggtcttcca tactcgggtg ccatcctgtg ttaaagcctg cagaggtatt
    11041 gcttatggca tattcaccat cttcaatttg acctcctgta tagcaggtat aggtcgtagt
    11101 tgccccattt aaattacagg ataatccggt gcctgtgccg aaggtctctt ggaagtcgat
    11161 atcctcacat tgaggctcaa tggtacatgg gctggtcaaa aataccactt cgacactctc
    11221 gatgacagta cagccatttc cttcaatctc aactgtgtaa actccagaag aggtaacgtt
    11281 taggttttgt gtcgtcgcgc ccgtattcca aaggaaagta acctcgctgg ccgaaatccc
    11341 atccagttca gggaaaagac tcacggttgg tgtgtcacaa acgacctgat ctggccctag
    11401 gtctgcggta aacccggcat tagaagaagg ggttacgacc acatcatcgg tgatggtttc
    11461 tgttgtccca ccgggggttt cgaagatcga aaccgccgtg tatgtggttt ctacctgagg
    11521 acataccgta atggcaaggt cagtaccaat aacggcaccc gtctcatcac gccactcaaa
    11581 gctaaaactt gagctcggcg cgccattagg aacaaatcgc caagtttcat ttgtcgcttc
    11641 ccagaaacca gtgttgcgtg taaggggaac actgtattca ttgctgttgt tcccaattag
    11701 cccgactgcg gccaatccat cattccaatc aggacatgct ggtttgtcta tcaggtttac
    11761 gtcgatcacg ttaagagact cgtataataa aatttgttgg gttgtgaaaa atccagcaca
    11821 agtgctgccg aaatgaggca tttcaaatac gttcattaca aagacgcggt agggcgcatc
    11881 tcctgtaacg tagtaattca ttctggcggg atcaggatca attgccgggt ttaggtcatg
    11941 aaacgctccg taaatagtat tcagcggaaa attcggttca gtattaggga tttgatctgc
    12001 aggatccatt gaccatccgt tatattgatc ggccagcgat aagtcaaagc taatttgacc
    12061 attggccccc atgaccagtt gattgtaggt gttaccaaaa tattcaaaat caaagcccat
    12121 tggaatcggg aaactccaac gatcatcaat taagaggttt gtaggggttc ccccggtaag
    12181 tggtggtaag tcacaaaatg gcccttgaat ttgataagag gtcgttccgc gaccagggac
    12241 cgccaataat tcggcctcta ggtcaacaca ggggccagaa cactctgtag acacatcgtc
    12301 tcccgcatca agtaacgaac aagttccctc atcaatacag aaaaaagtca gagaaggact
    12361 ttctaaaaca cagttagggt cactgtcatt ggccactgtt aaaataacat tagttaaaga
    12421 ggcgtatgga ccaaacaagt aggttcctaa ggccgttatc gtttgcccag gacttccttg
    12481 gttatctgta actaaatagg acaaccctgt tcctaaatca gtaaagtctg ctgaaacaaa
    12541 aaactggttg tttgtctcac agtcgcctaa agtatcaaat aacaccgtag gattggtaca
    12601 agtactgcag tatacatcaa aatcccaagg ggtaaatcca ctactttggc agctgatgct
    12661 tccatctgat tggatgatta cggtcaggct atctccagag gaagtatagg taagtccggt
    12721 cagatcaccg ccgtttccgt aaggcgttgc cgcgtttaag tctgtgacgc catccgaatc
    12781 taaaataatg acttcgtcaa aactggattc aacttgaccg gtattaaaat agatgatcag
    12841 gggcaagcct gtattgctct gaaatgcaaa ttgggtatta tcattgtttc catagcaata
    12901 ggtagtattc acgggacctg cagagcaatc cacattttgg gcctgggtga ataagctcgc
    12961 tgaccaaatt agggctagtg ccattaggga tttcttccaa cgaagagatg aagatgtatt
    13021 cattgcgaat atgattggta gttattgagt ctaaaatacg catttttgtt aaaatattta
    13081 agatttgaac tgctcttttg tttcgtacct ttggacagcc tttagcgtta tgctggaaaa
    13141 acaagaaata caatacgaaa aagtcatatt ggtcgggtta atcaccaaag atcaagacga
    13201 gataaaatca gccgagtatt tggatgaatt ggcctttttg gcctatactg ctggaggaca
    13261 agtggcgcgc aggtttaccc aaaaacttga cgttcccaat ccaaagactt ttatcggcac
    13321 gggtaagatg gaagaagtca aaatatacat tgacgaaaat gaggtaacca cggcaatttt
    13381 tgatgatgaa ctcagcccgg cccagcaaaa gaatattgaa aagattcttc aagtcaaaat
    13441 tattgatcgg accaatctca tcctggatat tttcgcccaa cgggcgacaa cctcctatgc
    13501 gagaacgcaa gtcgaattag cccaatatga atatttgttg cctcgactgg ccgggatgtg
    13561 gacccacttg gaacgccaaa gaggaggtat tggtatgcgg ggtcccggtg aaacagagat
    13621 tgaaacagat cgacgtatcg tccgtgaccg aatagcgctt ttgaagaaaa aaataaaatc
    13681 gattgatcgg cagatggggg ttcaaaggag caatcgaggg gctttagtcc gtgttgcttt
    13741 agtgggctat accaatgtcg gcaaatcgac cttgatgaac gtcattagta agagtgaagt
    13801 ttttgccgaa aataaattat ttgcgactct tgacactaca gttcgtaagg tcgttattgg
    13861 aaatttgcct tttttactga gcgatacggt tgggtttatt cgcaaattgc ccacccaact
    13921 catcgagtct tttaaaagta ctttggatga agttcgtgaa gccgacctgc tgttacatgt
    13981 cgttgatatt gcccatcctt cttttgaaga ccacgtaaac tccgtcaatc agattttgga
    14041 tgaaatcgac agtaaggata aaccgaccct aatggtgttt aacaagattg atgcctatac
    14101 tcctgaacca tgggatccag aggatttgac tcaagaaaaa acggcgcaac acaacagtat
    14161 tgaggagtgg aagaacacct ggatggcaag aactaatggg gacgccctct ttatttcagc
    14221 tttggaaaaa gacaatcttt ctgagtttag aaaagtcgtc tatgacaagg tgcgcgagat
    14281 ccacattacg cgattcccgt ataacaactt tctctatcct gaagaattca acgagtaggc
    14341 cgataccttg tctcgacaaa ggacaagtgg ggatcggtgc ccaccttatt ttagtgtata
    14401 agtaattccg acacccaaag cttgacgaat ttgaaagcct tgaacggcat tatcatcata
    14461 aatggcttga aaggcaacgt ttgtggtgat taggttgttc acgcgcatgc ttaaattagc
    14521 cgtatagtca atatccacat ttttaggctt ttccaaatag tttgaataaa ggcctaaaat
    14581 attttcaagc gcaacattag gcagcaattc aatttttgca tagccattaa gggccatccc
    14641 aagttcaaat cgggtggtct ctccagaagc aaccccgaaa tactcgtcat cttcatcgag
    14701 tctatttcta gggtcgttgg ggtttgtgaa ctgactcgca acgacgatta agcgccctgt
    14761 tgacggggca atgttcagct ttaaatcttc ttcttttttc cataaaatac ccgggcctaa
    14821 taagaaattt gctggagaaa agaatttaga attgcgcacg tcactgctaa tttttaccga
    14881 aacaccattg acaatttcgg tgcgttcact ggcttcaaac ccagagtcaa attgggtttt
    14941 gaaattaaat agtcccgaat aaaaccaccg gctattccta atctttttac caacgactga
    15001 gataacttcg acgcggtcgt ttgttttctg taaattgtct tgggcttgaa ttttggcggc
    15061 cccgtactca gccgttactt tagtgtccca gttgacccca tttttattgt agtttaagtt
    15121 gtaagtgagg gtgacatttc cagcgacatt actgatccct cccccttgcc attctttatt
    15181 gaatgctgct tgattgaata gaaaggtagt tactgcactt tccgtccaaa cggtttctac
    15241 tttttcctgg ggttcttgcc cccatattgc tgggactact gagtttatga gcaggaaaat
    15301 caggccggtc ttaaaattga aaaaacgcaa aagtcttcga aaagcggctt tggtgggata
    15361 acgagcaatc attttggtta gtttttatgc aaaggtacaa aggaacaggc ttcgccgaac
    15421 attaattttt ttaccacagg ggtaagtctt tgggccaaaa tcgcataggc ggagggtgga
    15481 attttttcat cgctgcaacc tttgagtaaa accagcccat tttggtaagg acttaagtcc
    15541 atctccgcga tgtggtcgac ccaaagaatc aggttaaaag acaccttatc gcaaaccaac
    15601 accttattgg cgtaggcgga aagggttgta gccacgagtt gataggccca tgccgggac
//
LOCUS       DPUP01000167            2786 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_21607,
            whole genome shotgun sequence.
ACCESSION   DPUP01000167 DPUP01000000
VERSION     DPUP01000167.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2786)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2786)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2786
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..307)
                     /locus_tag="DHV98_06110"
     CDS             complement(<1..307)
                     /locus_tag="DHV98_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015364065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05927.1"
                     /translation="MQTLIHYFLHLGAPAIVAFVFFKKQWVSVYFILMATMLVDLDHL
                     LATPIFQAGRCSINFHPLHTYCAMGAYVIMLFLRRPYNLIGLGLCMHMLTDWIDCQMM
                     "
     gene            complement(307..642)
                     /locus_tag="DHV98_06115"
     CDS             complement(307..642)
                     /locus_tag="DHV98_06115"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05928.1"
                     /translation="MRKKFLSIIAICFFGSLAQGQTVFELDASQSMLMYGKGPGQDGT
                     INPFEGQDCFAIVKNLGKELFSARLQKNGAILQIIEVPEGQSKRIKLPVGVELRSDLV
                     VSKSSRILI"
     gene            824..>1630
                     /locus_tag="DHV98_06120"
     CDS             824..>1630
                     /locus_tag="DHV98_06120"
                     /inference="COORDINATES: protein motif:HMM:PF01263.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCK05929.1"
                     /translation="MKIETSEFGQTKFGRPIIEYGLTNTQGFSISVLNYGGIVTRLMA
                     PDRNGMLSNIVLGYNEFNDYENNNPYFGAIIGRYANRIRNAEFTLGSHHFTLSKNDGP
                     HHLHGGVQGLDKVIWRVDTHKTQDQASLTLRYVSKDSEEGYPGNLNVGVTYTLDQNNQ
                     WTIDYFAQTDKETPVNLTQHSYFNFSGNFDQEILDHHLKLEADYYVPMDDDNLPTGKL
                     SAVKGTPFDFRTAKTIATQLSTLAEGSNKEAGFDHCFALRTHDNTLRKIAE"
     assembly_gap    1631..1727
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1728..1970
                     /locus_tag="DHV98_06125"
     CDS             <1728..1970
                     /locus_tag="DHV98_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010517659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HCK05930.1"
                     /translation="KLSGRHLEVFTTKPGVQFYTANFPKNLYPNPQGGFYKSRTGFCL
                     ETQHFPDAPNQSSFPCALLMPGETYQHKTIYKFGCK"
     gene            complement(1989..2402)
                     /locus_tag="DHV98_06130"
     CDS             complement(1989..2402)
                     /locus_tag="DHV98_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK05931.1"
                     /translation="MKKLYFLFWGVIFGIVLIKSEVASWFRIYEMFQFDSFHMYGVIG
                     SAVIFGIILTQVIKRMEIKSIDKQDLVFVDKDFMPKRYIFGGIIFGLGWALTGACPGP
                     MFALLGAGYYAIIIPILFAILGTLAYGVIKDKLPH"
     gene            complement(2405..>2786)
                     /locus_tag="DHV98_06135"
     CDS             complement(2405..>2786)
                     /locus_tag="DHV98_06135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HCK05932.1"
                     /translation="TWNLVFIFGVLIGGYLANNFLTADDSIALASATVDKLNAIGISS
                     ENQSYVPREIFDLTNNDHLILSIFLLSIGGFLVGFGTRYAGGCTSGHAITGLSQLQVG
                     SLIAVFGFFIGGLVVTHFIYPFIF"
BASE COUNT          857 a          565 c          571 g          696 t
ORIGIN      
        1 acatcatctg gcaatcaatc cagtcggtaa gcatatgcat acagagccca aggccaatta
       61 aattataagg ccttcttaag aaaagcataa tgacataggc gcccatggca cagtaagtat
      121 gcaagggatg aaagttaata ctgcagcgtc cggcctgaaa gatgggtgtg gcgagtaaat
      181 ggtctagatc gaccagcatg gttgccatga gtataaaata aacactgacc cattgctttt
      241 taaaaaacac aaaggcaacg attgctggcg caccaaggtg taaaaagtaa tggatcagtg
      301 tctgcactaa atcagaattc ggctcgattt agaaactacc agatccgaac gcaattccac
      361 accgaccgga agtttaatgc gtttgctttg tccttcagga acctcaatga tttgtaggat
      421 cgctccattt ttttgtagac gagcagaaaa caactctttt ccgaggtttt ttacgatggc
      481 aaaacaatct tgtccttcaa acggattaat cgtcccgtct tgtccaggac cttttccata
      541 catcaacatg ctttggctgg catcgagttc aaaaacggtt tggccttgag ctagagatcc
      601 aaagaaacaa attgcgatta tgctaagaaa tttttttctc atgagctgaa gatagagaat
      661 tgttaccttt atctcatgga acagccacag aaatttagtt ttaaagaaaa gtcaatcgcc
      721 ctcggtgtta ttgcgggtgt tttggtgggt gtccttacca aaaatattgg tatttggctc
      781 cccgtaggta tcgcaattgg ggcgggtatt gggtatacga gaaatgaaaa tagaaaccag
      841 tgaatttggc caaaccaagt tcggcaggcc aataattgag tatggcttaa ccaatacgca
      901 gggtttttct atctccgtat taaattacgg aggtattgtg acgcgactca tggccccaga
      961 tcgcaatggg atgttgtcga atatcgtttt gggctataat gaatttaatg actacgagaa
     1021 taataaccct tatttcgggg cgattatcgg tcgttatgcc aacagaatta gaaatgcaga
     1081 attcacccta gggagtcatc attttacgct ttcaaaaaat gatggtccgc accatttgca
     1141 cgggggggtt cagggtttgg acaaagttat ttggcgcgtg gacacccata aaactcagga
     1201 tcaggcaagc ttaaccttga ggtatgtcag caaagattca gaagaaggct accctggcaa
     1261 tttgaatgtt ggggtaacct acacgctcga ccaaaacaac caatggacga ttgactattt
     1321 tgcgcagacc gataaagaga ctccggttaa tttaacccag cacagttatt ttaatttttc
     1381 agggaatttt gatcaagaaa ttttggacca ccaccttaag ctcgaggccg attattatgt
     1441 gcccatggat gatgataatt tacccacagg aaaattatcc gcggtaaagg ggactccatt
     1501 tgactttaga acagcaaaaa caattgcgac acaattgagc actttggcag aaggatccaa
     1561 taaagaggct ggcttcgatc attgttttgc cttgagaact catgacaata cgttgagaaa
     1621 aattgctgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnaag ctcagtggca
     1741 gacatttgga agtctttacc acaaaacccg gggttcagtt ttacacggcc aatttcccga
     1801 aaaatttgta tccgaacccg caaggcggat tctataaaag tagaacgggc ttttgtttag
     1861 aaacccaaca ttttcctgac gcaccgaatc agagctcttt tccctgtgca ctattgatgc
     1921 cgggagaaac ctaccaacac aaaaccattt acaagtttgg ctgtaaataa aggccctctt
     1981 aagggcgatt aatgcggtaa tttatctttg atcacaccgt aagccaaagt ccctaatatg
     2041 gcgaaaagaa tgggaatgat aatggcatag taccctgcgc ccaacaaggc aaacattggc
     2101 cccggacagg cccctgttaa ggcccagcct aagccgaaga ttatcccgcc aaagatatag
     2161 cgctttggca tgaaatcttt atcgacaaat acaaggtcct gtttgtcgat ggacttgatt
     2221 tccattcttt taatgacttg agtgaggatt atgccaaaaa tcactgcaga gccgatcacc
     2281 ccatacatgt gaaatgaatc aaattgaaac atttcataaa ttctaaacca tgaggctact
     2341 tccgacttaa tcaagacgat accaaaaatg accccccaaa acaaaaaata taacttcttc
     2401 atgattaaaa gataaatggg taaataaaat gagtaacgac aagcccccca ataaagaaac
     2461 caaaaacagc gattaaggat ccgacttgta attgactaag accagtgatg gcatgtccgg
     2521 aggtgcatcc accagcgtat cgggtgccaa acccaactaa aaacccaccg atggaaagta
     2581 aaaagattga cagtataaga tgatcgttat tggttaaatc gaaaatttca cggggaacat
     2641 agctttggtt ttctgaactg attccaatag cgtttaactt atctaccgtg gcgctcgcta
     2701 gggcgatcga gtcgtctgca gtcagaaaat tattggcaag ataaccccca atcaataccc
     2761 cgaaaataaa taccaagttc catgtt
//
LOCUS       DPUP01000168           23097 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3389,
            whole genome shotgun sequence.
ACCESSION   DPUP01000168 DPUP01000000
VERSION     DPUP01000168.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 23097)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 23097)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23097
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..932)
                     /locus_tag="DHV98_06140"
     CDS             complement(<1..932)
                     /locus_tag="DHV98_06140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019671269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HCK05933.1"
                     /translation="MNVIKRDGHKEPVMFDKITARIKKLCYGLNELVDPVKVAMRVIE
                     GLYDGVTTSELDNLAAEVAATMTVSHPDYAILAARISVSNLHKNTKKSFSEVMTDLYE
                     YVNPRTGKKAPLLSDEVYKVIKDNAEMLDSAIIYNRDFNYDYFGFKTLERSYLLKLNG
                     QIVERPQHMLMRVSVGIHLNDLAAAKETYELMSKKFFTHATPTLFNSGTPKPQMSSCF
                     LLTMKDDSIDGIYDTLKQTAKISQSAGGIGLSIHNIRATGSYISGTNGTSNGIVPMLR
                     VFNDTARYVDQGGGKRKGSFAIYVEPWHADIFDF"
     gene            complement(1059..2036)
                     /locus_tag="DHV98_06145"
     CDS             complement(1059..2036)
                     /locus_tag="DHV98_06145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007811193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase"
                     /protein_id="HCK05934.1"
                     /translation="MSAVEPILAENKNRFVIFPIQHHDIWDWYKKSEASFWTAEEIDL
                     HQDLTDWADKLNDDERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQI
                     MMENIHSETYSLLIDTYVKDDKEKDVLFQAIENFPAIKKKADWALKWIDSPSFAERLI
                     AFAAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHLVNK
                     VTKERIREIIIDALNIEREFITESLPISLIGMNAKLMTQYLEFVTDRLLVELGCDKEY
                     NSSNPFDFMDMISLQGKTNFFEKRVSEYQKAGVTNKDKESNKISFDADF"
     gene            complement(2381..>2727)
                     /locus_tag="DHV98_06150"
     CDS             complement(2381..>2727)
                     /locus_tag="DHV98_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008237236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3109 domain-containing protein"
                     /protein_id="HCK05935.1"
                     /translation="QGRECAYTHFEPDGSAHCGIERAYKAGAVDVQKPISCHLYPVRV
                     QDYSEFSAVNYHRWPICSDACVLGASLKVPVYQFVKEALIRKFGPDWYDELALVAKTF
                     KDQNQNPSREVD"
     assembly_gap    2728..2834
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2835..3123)
                     /locus_tag="DHV98_06155"
     CDS             complement(<2835..3123)
                     /locus_tag="DHV98_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3109 domain-containing protein"
                     /protein_id="HCK05936.1"
                     /translation="MFQIGKTLVSEALIDQDFVCNLNACKGACCVEGEAGAPLSKEEA
                     QWLVENQSKIEPFLPKAGIEALDTQGAFIELETGEYETPLVQGRECAYTHFE"
     gene            3206..3787
                     /locus_tag="DHV98_06160"
     CDS             3206..3787
                     /locus_tag="DHV98_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05937.1"
                     /translation="MAFNFKEIFTASMVLFAVIDIIGNIPIVITLRKKAGHIHSEKAS
                     VIAAIVMIFFLFLGEEILNLIGINVNEFAVAGSFILFFIALEMILGITLFKDDGSSPD
                     MASVFPLAFPMLAGPGTLTTLLSLRAEFALENVIISIVLNVIVIYAVLKTSSKLQSIL
                     GKNGIGIIQKVFGVILLAIAVKLFTSNIQELFI"
     gene            3798..3998
                     /locus_tag="DHV98_06165"
     CDS             3798..3998
                     /locus_tag="DHV98_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05938.1"
                     /translation="MKYFRYVLISIAVILIVYNATILDFNAPLQGDSQIALIGILASA
                     SVIVLLLILIQAERVKQRHKGR"
     gene            complement(3995..4429)
                     /locus_tag="DHV98_06170"
     CDS             complement(3995..4429)
                     /locus_tag="DHV98_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP deaminase"
                     /protein_id="HCK05939.1"
                     /translation="MQEGSLKQLKYDKAYLKMALEWSKLSYCKRRQVGALIVKDKMII
                     SDGYNGTPTGFENICEDQDNTTKWYVLHAEANAIMKVASSTQSCKGSTLYITMSPCQQ
                     CSKLIHQAGIVRVVYHTQYKDDSGLLFLKKAGIAVDQLVRLD"
     gene            complement(4486..5058)
                     /locus_tag="DHV98_06175"
     CDS             complement(4486..5058)
                     /locus_tag="DHV98_06175"
                     /inference="COORDINATES: protein motif:HMM:PF13795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HupE / UreJ protein"
                     /protein_id="HCK05940.1"
                     /translation="MNEFELFFVLGHKHVLDLEAYDHVLFLAALTLSYDLGQWKRLLG
                     LVTLFTLGHTASIVATFYGHIQAPAVLIELLIPITIITAALHNIGRRLRGKAQGSIGL
                     LFAVALIFGVVHGFGFGRYFIQIAQDTGVGSFFAFAMGIEWAQLVVVFGVLLLSLIAQ
                     YLMRINRNDWILVMSGIIIGLTLPMLLERI"
     gene            complement(5179..5394)
                     /locus_tag="DHV98_06180"
     CDS             complement(5179..5394)
                     /locus_tag="DHV98_06180"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05941.1"
                     /translation="MIFLYSSGVQLFDFLNILRLIYDINGRLIQSVDLGNMDREASVN
                     VANLASGVYLVQLEAEGATAIKRLIKE"
     gene            complement(5460..5542)
                     /locus_tag="DHV98_06185"
     tRNA            complement(5460..5542)
                     /locus_tag="DHV98_06185"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:complement(5506..5508),aa:Leu,seq:caa)
     gene            5653..6594
                     /locus_tag="DHV98_06190"
     CDS             5653..6594
                     /locus_tag="DHV98_06190"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096326.1"
                     /note="catalyzes the formation of 5-phospho-alpha-D-ribose
                     1-phosphate from D-ribose 5-phosphate and ATP; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HCK05942.1"
                     /translation="MSAPTPQPKIFACKQSQELAQSIAQSFGIPLGKVITSTYSDGEF
                     QPSFEESVRGSRVFIIGSTFPNSDHLMEMLLMLDAAKRASARHITAVLPYFGWARQDR
                     KDKPRVPIAAKLVAKMLETAGATRIITMDLHADQIQGFFEKPVDHLFASTIFLPYLKS
                     LNLENLTIASPDMGGSKRAYAYSKALMSDVVICYKQRAKANVIEHMELIGEVTGKNVV
                     LVDDMVDTAGTLTKAADVMMEHGALSVRAICTHPILSGKAYQRIEESKLEELIVTDSI
                     PLRQSSNKIRVLSCADFFADVMVRVNENESISSKFIM"
     gene            6777..7412
                     /locus_tag="DHV98_06195"
     CDS             6777..7412
                     /locus_tag="DHV98_06195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HCK05943.1"
                     /translation="MKSITINGLERESVGKVATKALRNAGKVPCVVYGGDAPVHFSAD
                     EIAFKDLVYTPEVHTVVIALNNGTQVECILQDIQFHPVTDKILHIDFYQIFDNKEVTL
                     EIPVRLVGNSRGVRNGGNLRIVNRKLRVKALPANLPDFIEADITEMRIGHKMYIGTIE
                     QENFKIMHPDNTVICQVRTSRTAVNDTDDEDEDEASADEAEAPAAEAPAES"
     gene            7514..8080
                     /locus_tag="DHV98_06200"
     CDS             7514..8080
                     /locus_tag="DHV98_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HCK05944.1"
                     /translation="MKKFLIVGLGNIGADYTHTRHNIGFQILDHFAAHHQLDWQTVKL
                     GDRAEYKIKGRTFILIKPSTYMNLSGKAVLHHLRQEKLDPSQMLVITDDLNLPFGAIR
                     LKAKGSDGGHNGLKDIQNALQTTVYPRFRFGISNTFGQGQQVDYVLGNWSPEETNLMP
                     ERLQKSIEIIPSFGLSGLAQTMNSFNGT"
     gene            8082..9026
                     /locus_tag="DHV98_06205"
     CDS             8082..9026
                     /locus_tag="DHV98_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010181439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin biosynthesis protein RibF"
                     /protein_id="HCK05945.1"
                     /translation="MQVHKQVQEFNPERGSVITIGTFDGVHLGHRTILKKVVNEARVR
                     DLNAVLLTFFPHPRMVVQKQTDLKLLNTLDEKIQLLEVLGVDHLVIQPFTQEFSRLTA
                     VEYVRDLLVNQLKAKKIIIGYDHRFGRNRTANIDDLKEFGLVYDFEVEEISAQQKDAV
                     AISSTKIRKALALGDVDTANTYLGGAYPLSGIVIKGQSLGQTLGYPTANFVVAESYKL
                     LPKQGVYLSSAVIDGHPYFGVTNIGTNPTVGGVDPRIETHFLALNADLYDRPLQIKLL
                     SRIRDQKIFPDLSALKSAIAADIQHATGLIPKFKNGVV"
     gene            9016..10359
                     /locus_tag="DHV98_06210"
     CDS             9016..10359
                     /locus_tag="DHV98_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05946.1"
                     /translation="MWFKPVDNIGLVLWRIVFGLLIALESFGALITGWVKEVLIEPTF
                     TFSFIGFEWLQPLPGWGMYAYYTLMGLSGLAIMFGYRYRWSMLLFALLWTGSYLMQKS
                     AYNNHYYLLCLLSWLMVFLPAAKDVSWDTLKTGKRSPLMPFWVLILMIGQVWIVFTYA
                     ALAKLYPDWLDGKVIALFMEGKKSYPIIGPWLQDELLQKTLIWGGIFFDALIIPALLW
                     RRTRVIAFILSLGFHLFNSIVFQIGIFPYMSIAFAFLFFSPQTLRQKFGRWITRFETR
                     VQNKLDQSQCVKRQIQHLSPAKQPWIPALIVVYLVIQVLLPLRHHLIKDSVLWTEEGH
                     RMSWRMMLRARKGITSFYVMEPGTGVKSVYPLRDLVTQKQLKMLSSHPDFIWQMAQKI
                     KAIEAEKGREVGVYVRSRVSINGREYSPLISPEVNLAEEPWDPWRHHDWILPSPF"
     gene            10440..11723
                     /locus_tag="DHV98_06215"
     CDS             10440..11723
                     /locus_tag="DHV98_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HCK05947.1"
                     /translation="MLQVSQIREQYDQSIEALAKRGVDAREVFDRVLKLDEQRRATQA
                     QLDETLAQSNTFSKEIGQLFQNGQPQKANILKEKTTQLKAQSKVLQEQLSEFAQALQE
                     VLWTIPNLPNAIVPAGSSDQDNEVVLQEGDIPSLHEGALPHWELAKIYDLIDFELGVK
                     ITGAGFPVYKGYGARLQRALIAYFLDKNTNAGYTEYQVPHLVNEASGFGTGQLPDKEG
                     QMYHVTGDNLYLIPTAEVPVTNLFRDVLLNQSDLPVCCTGYTPCFRREAGSYGAHVRG
                     LNRLHQFDKVEIVRIEHPDNSYQALDQMVGHVQEILRELNLPYRILRLCGGDLGFTSA
                     LTYDFEVFSTAQDRWLEISSVSNFETFQANRLKLRFKDNDGNNKLAHTLNGSALALPR
                     VMAGILENYQTPDGIKIPEVLVPYCGFDFIPAPGK"
     gene            11777..>11990
                     /locus_tag="DHV98_06220"
     CDS             11777..>11990
                     /locus_tag="DHV98_06220"
                     /inference="COORDINATES: protein motif:HMM:PF13174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05948.1"
                     /translation="MRFWAYILPIMLFCAPIWAQKEALAENYFEQGAYDKALSLYQRL
                     VEEQPRQPKYVLGLVNTYQELSQFDEA"
     assembly_gap    11991..12070
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <12071..13645
                     /locus_tag="DHV98_06225"
     CDS             <12071..13645
                     /locus_tag="DHV98_06225"
                     /inference="COORDINATES: protein motif:HMM:PF13174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05949.1"
                     /translation="DEAENLLKSRLREPRIYPLYYIALANNFNRQRQIDSAQFYIDKA
                     LDYTFEQPNYTVSMGKALTDLSLLGAAKILYQGVMQRYPEKDFNLQLARVYGELGALE
                     PMFETYLTLMESTPRFIPSIQRYLETYITEDPLNPGNIELKTALIKRLSQGQEPLYNS
                     LLSWLFAQQKEYGKAFIQEKAIFMRSPGDLTGIKQLGYAALNDQQPIMAKTIFSFVLE
                     TAVDPRERLAAHLEILRLDRSMKQRPAQEIELSYTELIQQYRAFDLTQLKLDYAHLLA
                     FDLDQSQKAIDLLDRAAERAEKSYAEGRLRLLLGDILVFNGQYNQALVNYALVQSVLK
                     DDDLAQEAKFKEAQTSYFRGDFEWAQTQLKVLKSSTAQKMSNDAIALHVLINENTLED
                     STQIALKKFAGAQLLMHQKKYSSAIEALNTLQLQEPMDRLADDILHNLGSLYRLTQAP
                     ELAKVQWETLIREYPDSVYIDDALFALSELMLLEFKAPEQAQNYLEEIIFNHADSIYF
                     IDAQKQYRKLRGDQIN"
     gene            13669..13980
                     /locus_tag="DHV98_06230"
     CDS             13669..13980
                     /locus_tag="DHV98_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4286 domain-containing protein"
                     /protein_id="HCK05950.1"
                     /translation="MYIYNVTITLEPEIETHWLEWMQQVHIPEMIQTGKFSGALMTRV
                     ITDQDLGGPTYSVQYRCKSKEILQDYYREDAEKLRARSARFAGKFIAFRTELDVIQEF
                     S"
     gene            13977..14765
                     /locus_tag="DHV98_06235"
     CDS             13977..14765
                     /locus_tag="DHV98_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase"
                     /protein_id="HCK05951.1"
                     /translation="MSVRPKKHLGQHFLKDRSIAQRIAELLTGVGYEHLLEIGPGTGV
                     LTQYLINKPWQLIALDLDQESIDYLNEYYTPSELTVRYGDVLKDDFTDLFGVNPFAIV
                     GNFPYNISSQIVFKTIEWRHQIPEFCGMFQKEVAQRICAAPGSKTYGILSVLTQAYYK
                     AEYQFTVPPGVFHPPPKVDSGVLRLTRHDDLELPCDEALFFKVVKTSFQQRRKTLRNS
                     LKIFNISQKLEEDSIFARRPEQLSVAEFITLTQKMESDGISTHS"
     gene            14743..16095
                     /gene="mgtE"
                     /locus_tag="DHV98_06240"
     CDS             14743..16095
                     /gene="mgtE"
                     /locus_tag="DHV98_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HCK05952.1"
                     /translation="MAFQLTPEFLENVEQLVAQKKRKAIRDLMGEFHFADLAEVLDAL
                     ETEQATYLVKSLESDVTSEALMELDDDVREKILGRLSPNEIARELEEMDTDDAADVVS
                     ELDIAIQQKVIDRIEDEEHAADIVELLKYDEDTAGGLMAKELVRVKDTWTTAGCIREM
                     RRQAKNVTRVHSIYVVDKAGVLKGRLSLKDLLTAPERARIADIYIPKVDFVTDNTEGE
                     EVARIMQKYDLEAIPVVNNAGVLLGRVTIDDIVDFIREEAEKDYQMAAGISGDVEADD
                     SLGKLTKARLPWLLIGMFGGIGAASIIDGFGTILTDFPNLFLFVPLIQATAGNVGVQS
                     SAIVVQGLANDTLKGNIAGRLLKETALALINGLSIALIVLIFSHLFFNTTYLESISIG
                     LAVVVVILIAALVGTFVPMLLDKKGIDPAVATGPFITTSNDVFGILIYFLIAKLILGI
                     "
     gene            16105..17046
                     /locus_tag="DHV98_06245"
     CDS             16105..17046
                     /locus_tag="DHV98_06245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009411355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HCK05953.1"
                     /translation="MKILHIDQNHPVLWSELSVLGYKNTQGYSLTREEVLSIIESYDG
                     VVIRSRILIDRAFLDAAKQLKFIARVGAGLDAIDTDYAAEKGVLLISAPEGNSNAVGE
                     HALGLLLNLLNNINRADRELRQGLWRREPNRGHELSGHTVGIIGYGHMGKAFAKTLRG
                     LDCPVICYDIKPEVGDQNAHQVTLEQFFAQAQVVSLHTPLTPETEFMINAEFIEKFAH
                     NIYLINTARGRSVVTQDLVAALERGKVLGAGLDVLEYEHSSFEKLHTQELPEALKVLL
                     SLDNVILSPHIAGWTHQSKEKLAQVIVAKIQNHFPIK"
     assembly_gap    17223..17376
                     /estimated_length=154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(17377..19104)
                     /locus_tag="DHV98_06250"
                     /pseudo
     CDS             complement(17377..19104)
                     /locus_tag="DHV98_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781916.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol acyltransferase"
     assembly_gap    17996..18052
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(19154..20416)
                     /locus_tag="DHV98_06255"
     CDS             complement(19154..20416)
                     /locus_tag="DHV98_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020213061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HCK05954.1"
                     /translation="MKVYKFGGASVKDANGVKQVVHILKLTQKEPLVVVVSAMGKTTN
                     ALEEVVRGYLSNNPDCDAHIAEIFSKHLSITRELFDQPSHPVFKAISGLRQGLSDFIR
                     QNKATDHAFVYDQIVSYGELLSTTIVGHYCLDSGIDLSWLDVRSCIKTDATYREGVVD
                     WTATQKAIKSVINPKGISLTQGFLGSETKHNFTTTLGREGSDYTAAIFAYCLNALSVT
                     IWKDVPGVLSADPRFFSETVLLENIAYSEAIELAFYGASVIHPKTLQPLQRKEIPLFV
                     RPFNDPKAKGTRVGKGPDLKPLVGCIIKKEQQVLIQLSALDFNFMMEDHIGDVFKWLH
                     AYQMKVELIQNSAISFSVCVDNKYNRLPELVAQLQKRFQVLVQPRVTLLTLRHAPAKM
                     IQAAVKGREVLLRQESGNTLQLVLQGVD"
     gene            complement(20413..20889)
                     /locus_tag="DHV98_06260"
     CDS             complement(20413..20889)
                     /locus_tag="DHV98_06260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013305539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCK05955.1"
                     /translation="MEPLIRLAVKDDTPAIMGLIQGLADFEKEPDQVVITANDLIRDG
                     FGSDPKFWCFVAEVAHKIVGMALFYNRYSTWKGPTIHLEDLMVQEEFRGRGVGTALYR
                     AVLSHARARKVRRVNWEVLDWNTPAIDFYEKSGADVLKHWHVVSMEDQAIESYLES"
     gene            20967..21992
                     /locus_tag="DHV98_06265"
     CDS             20967..21992
                     /locus_tag="DHV98_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HCK05956.1"
                     /translation="MAVQKNKTLGEFIIENQSEFQYSSGELSRLINSIRLAAKVVNHE
                     VNKAGLVDIIGQAGEVNVQGEDQQKLDVFANETFINTMTNREIVCGIASEEEEDFITI
                     QGRNGQNENKYVVLIDPLDGSSNIDVNVSVGTIFSIYRRVTPAGTPVSLEDFLQAGNR
                     QVAAGYIIYGTSTMIVYSTGHGVNGFTLNPALGTYYLSHPNLSFPENGQIYSVNEGNY
                     VHFPQGIKDYIKYCQKEEENRPYTSRYIGSLVSDVHRNMIKGGIYIYPNTAKDPQGKL
                     RLLYECNPMAFLIEQAGGKASDGYRRILDIQPTELHQRTPFIGGSASMVEKAESFMGL
                     YPETTPQ"
     gene            complement(22033..22458)
                     /locus_tag="DHV98_06270"
     CDS             complement(22033..22458)
                     /locus_tag="DHV98_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05957.1"
                     /translation="MSFTDLFESGEHRSNLGHFASLVYLAESHSGILESELAILQRFA
                     RKLDITDAEYQEVLKDPKKYPINPPTSATKRLERMLDLFKLILADHHIDAHEELLVHR
                     YAIGLGYSDQDAKALIKRSIDIFSGGLDLEDYQYLLNKK"
     gene            22575..>23097
                     /locus_tag="DHV98_06275"
     CDS             22575..>23097
                     /locus_tag="DHV98_06275"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HCK05958.1"
                     /translation="MVPSRISSLFEQSLPWQKLRQRLSENHRITRVSGLVGSAQSLII
                     SKIFLQEQRPVVCVMNDKETAAYLLNDLEGLLDQEQVLFYPGSYRRPYQIEETDNNNV
                     LMRSEVLTHLSSRKKPALIVTYPTALFEQVVTKKTLKQNTIKLETGEQLDVDGLNELL
                     FEAQFKRVDFVTEP"
BASE COUNT         6404 a         5215 c         4851 g         6229 t
ORIGIN      
        1 aagaaatcga agatatcggc atgccatggt tctacataaa tcgcaaaact tcccttgcgc
       61 tttccaccac cttggtctac atagcgggcg gtgtcattaa atacacgcaa catcggtaca
      121 ataccgtttg acgtcccatt tgtcccagaa atataagatc ctgtagcgcg gatgttatga
      181 atgctcaaac cgattcctcc ggcagactga gaaatttttg ccgtttgctt taaggtatcg
      241 tatataccat cgatactgtc atctttcatg gtcaataaaa agcaagatga catctgcggt
      301 ttaggagtac cactgttgaa taaagtcggt gtcgcgtgtg taaagaactt tttggacatc
      361 aactcataag tttctttggc tgctgccaaa tcattgaggt gaatcccgac agaaacacgc
      421 attaacatgt gctgagggcg ctctacaatt tgcccgttaa gtttgagcag ataagaacgt
      481 tcaagggttt taaaaccaaa ataatcgtaa ttaaaatcgc ggttatagat gatcgctgag
      541 tctagcatct cagcgttatc cttaatgacc ttatagactt catcactcag aagcggtgct
      601 tttttccctg tgcgtggatt gacgtactca tagaggtctg tcatcacttc cgaaaacgac
      661 tttttggtgt tcttgtgcaa gttagatacg gagatgcgtg ccgctaaaat ggcatagtcc
      721 gggtgagaca ccgtcatggt tgcggcaact tcagcggcca aattatccaa ttcactggtt
      781 gttaccccgt catataggcc ttcaataacg cgcatggcga cctttaccgg gtcaactaac
      841 tcattgagcc cataacaaag tttcttaatt ctcgccgtga ttttgtcaaa catcacgggc
      901 tccttgtggc cgtctctctt aattacattc atgttgctag atgtgttttt atgtttagtt
      961 agttgtttta aagcccagag acgacgaacc ctcccaaata aatggttcgg cacctagagt
     1021 aactttaagg acccgtttaa aacgcgcctt cctcgggttt aaaaatctgc gtcgaagctg
     1081 attttattcg attccttgtc tttgtttgtc actcctgcct tttgatactc agaaacgcgc
     1141 ttctcaaaga agtttgtttt cccctgcagc gaaatcatat ccataaaatc gaaagggttg
     1201 ctggagttgt attccttgtc acagccaagc tcgactaaga gacgatcggt gacaaactcg
     1261 agatattgag tcatcagttt cgcgttcatc ccgatcaaac taatcggcag tgattcggtg
     1321 atgaactcac gctcaatatt gagggcatcg atgattattt ctctgatacg ctctttcgta
     1381 actttgttca ccaggtgatg gttgtgtaag tgcaccgcaa aatcacagtg tacgccttca
     1441 tcgcgtgaga ttaactcatt tgagaaggtc aagcctggca ttaacccgcg ctttttcaac
     1501 caaaaaatgg aacaaaatgc ccctgaaaag aagatgccct ctacggcggc aaaagcaatg
     1561 agacgctctg caaaacttgg gctgtcaatc catttcaaag cccaatctgc ttttttcttg
     1621 atcgccggga aattttcgat ggcctgaaac aacacatctt tttccttatc gtctttgacg
     1681 tatgtatcga tcaaaagcga ataggtttca ctgtggatgt tttccatcat gatttggaac
     1741 ccataaaaga atttcgcttc actgtactga acttcattga caaagttctc agcgagattt
     1801 tcgtttacta taccatcact tgcagcaaaa aatgcgagaa tgtgtttgat gaagtagcgc
     1861 tcgtcgtcat ttaatttatc tgcccaatcg gtcagatctt gatgtaaatc aatttcttca
     1921 gcggtccaaa aactggcttc actctttttg taccaatccc aaatatcatg gtgttgaatg
     1981 gggaatatta caaatctgtt tttgttttca gctaaaatag gttcaacggc gctcatgtgt
     2041 cctcttcttt aaaaattaaa ttttttgtga ttactaggga ctaacaaata tgaaaaaaat
     2101 atgagcgaca cccggaaata ttaatcatct ctttttaaca aagttttcaa catgctgtcg
     2161 aatttttttg tccgcgttga attgttcaaa agttttataa aatactgatt tacagaatat
     2221 tactttgaaa aaaataaagc ctagaaaagc gagttaaatt tctgaagatg tcgtgctcac
     2281 cccttataaa tgggcctttt tttagaaatt ttacccctgg ttaaaaaggt caaaaatcac
     2341 actaaaatca aaagttatta acgagccaaa aagcaatcca ttaatctact tcccggctag
     2401 gattttgatt ctgatccttg aaggttttcg ccacaagggc aagctcatcg taccaatcag
     2461 gaccaaattt tcgaattaaa gcctctttga caaattgata aacaggcact tttaaggacg
     2521 ccccaagaac acaagcatca ctgcaaatag gccagcggtg ataattcacg gcgctaaact
     2581 cggagtagtc ctgaacacgt accggataca aatgacatga aattggtttt tgaacatcta
     2641 cggcccccgc tttgtaagcc cgttcaatcc cacaatgcgc cgacccatcg ggttcaaaat
     2701 gagtgtaggc acactctctg ccttgcannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2821 nnnnnnnnnn nnnngttcaa aatgagtata ggcacactct ctgccttgca cgagcggtgt
     2881 ttcgtattca cccgtctcca attcaataaa agccccttgc gtgtctagcg cctcgattcc
     2941 cgcctttggc aaaaacggtt caatcttgct ttggttttcc accagccact gcgcctcctc
     3001 tttggaaagc ggcgcaccag cctcaccttc aacacaacac gctcctttac aagcgttgag
     3061 attgcaaaca aaatcttgat caatcagggc ctcagagacc aatgtctttc ctatttgaaa
     3121 catgaatcaa agataatatc aatttaaatt catggaagcc tgcaaaggat tatttgtttg
     3181 tgtaatttta tgccaaatct atggcatggc cttcaatttc aaagaaatat ttacggcgag
     3241 tatggttctt tttgccgtaa tcgacataat cggtaacatc cccattgtca ttactttacg
     3301 caaaaaagcg gggcacattc acagtgaaaa agcctctgtg attgcggcta ttgtcatgat
     3361 cttttttctc tttttggggg aagaaatttt gaatctaatt ggtatcaatg tcaatgaatt
     3421 tgcggttgcg ggttccttta ttttattttt tattgcccta gagatgattc ttgggataac
     3481 cctttttaaa gacgacggaa gctcaccaga tatggcttca gtattccctt tggcctttcc
     3541 catgcttgct ggacccggaa ccttgaccac attactctca ctgcgcgcag agtttgcctt
     3601 ggagaatgta atcatttcca tagtactcaa tgtaatcgtg atttacgctg ttttaaaaac
     3661 atcatccaag cttcagtcca ttttgggaaa aaacggcatt ggaatcattc agaaagtctt
     3721 tggtgtgatt cttttggcca tcgcggtaaa acttttcaca tcgaatattc aagaattatt
     3781 tatttgaccc caaacccatg aaatatttta gatacgtcct gatttccatt gccgttatcc
     3841 taatcgttta taacgcgacg atccttgatt ttaatgcgcc actgcagggc gacagccaaa
     3901 tagcgctcat cgggattttg gcctcagcct ctgtgattgt tctgttgctt attctgattc
     3961 aagcagaacg tgtgaagcag cgtcacaagg gacgttaatc taagcggacc aactggtcaa
     4021 cggcaatacc cgccttttta agaaacaata accctgaatc gtctttgtac tgggtgtgat
     4081 aaacaacgcg cacaatgccc gcttgatgga tcagcttgct gcattgttgg caaggagaca
     4141 tcgtaatata cagggtactt cctttgcagc tctgggtaga agaagccact ttcatgatgg
     4201 cgttggcctc ggcgtgcaaa acgtaccact tcgtggtatt gtcttggtcc tcacatatat
     4261 tttcaaaacc cgttggggtc ccattgtagc cgtcactgat gatcatttta tctttaacaa
     4321 tcaaagcccc cacttgcctt cttttacagt aagaaagctt tgaccattcc aaggccattt
     4381 tcagataggc tttatcgtat ttgagctgtt ttaaagatcc ttcttgcata agtcgaagat
     4441 actatcattt aattaattta tggccagctt ccggtttctg cagccttaaa tgcgctcgag
     4501 aagcatgggt aaggtcagtc cgatgatgat tcccgacatg accaaaatcc aatcgttacg
     4561 attgattctc atcaagtact gagcaattaa actcaagaga agtacgccaa agaccaccac
     4621 gagctgtgcc cattcgattc ccatggcaaa agcaaaaaaa ctccctacgc ccgtatcttg
     4681 agcgatttgt ataaaataac gtccgaaacc aaaaccatga accacaccaa aaatcagcgc
     4741 tactgcaaaa agcagcccaa tagacccttg cgctttaccg cgtaaacgtc gccctatatt
     4801 gtgcaaggct gccgtgatta tcgttatggg tatgagcaat tcgatcagta cagcgggcgc
     4861 ttgtatatgg ccgtaaaaag tagcgacaat cgatgccgta tggcctaagg tgaatagcgt
     4921 caccaaaccc aatagtctct tccattgacc gagatcataa gacaaagtca aagccgctaa
     4981 aaacagcacg tgatcatacg cctcaaggtc cagcacatgt ttatgaccca ggacaaaaaa
     5041 gagttcaaac tcgttcatca aattaattgt tttggatagg ttagcttcag atcaattagg
     5101 tcaaatatcg caatttcaat taaaaaggcc agctctatga gctggccttt tactaaagaa
     5161 caaataacta atcttgtttt attccttaat taatcgcttg atcgcggtgg cgccctctgc
     5221 ctcaagctgt accaagtaca ccccagacgc caggttagcc acattcacac tggcttcacg
     5281 gtccatgttg cctaggtcaa cactttggat caatcgacca ttgatatcat agataagcct
     5341 taaaatattc aaaaaatcaa ataactgtac cccagacgag tatagaaaaa tgatgcttgc
     5401 tgcccgggac taggttattt tacaaaaaac aaaaacccct cagagatttc tgaggggttt
     5461 agtaccttgg gtgggaatcg aacccacact ccgaagaaca cgagtttgag tcgtgcgcgt
     5521 ctaccaattc cgccaccaag gcaattggag ggcgaaaata aacaatattt tcaaattgtt
     5581 agtaattctc taattcattt ttgtgttatg acaaccatag gattactttt gtaattcatt
     5641 aagaatttcg tcatgtctgc accaacccct caaccaaaaa ttttcgcctg taagcaaagt
     5701 caagaactcg ctcaatctat cgctcagtct tttggcattc ccctgggaaa agtcattacc
     5761 tctacctata gcgatgggga atttcaaccc tcttttgaag aatcagtgcg gggaagccgt
     5821 gtttttatca ttgggtcaac gttcccaaac agcgaccacc taatggaaat gctcttaatg
     5881 cttgatgccg ctaaacgggc ctcagcaaga cacattaccg cagtgctccc ttattttggg
     5941 tgggccagac aagaccgtaa agacaaaccc agagttccaa tcgccgcaaa actcgtggct
     6001 aaaatgctag agacggctgg cgctacgcgc atcatcacta tggatctcca cgccgatcaa
     6061 atccagggat tttttgaaaa acccgtagac cacttgttcg cctcgacgat ctttttgcct
     6121 tatctcaaat cgctgaattt agaaaaccta acgatcgcct ctcctgatat gggtggttca
     6181 aaaagggcct acgcctattc caaggcctta atgagtgatg tcgtcatctg ttataaacaa
     6241 cgcgccaaag caaatgttat cgagcacatg gaacttatcg gtgaagtcac gggtaaaaat
     6301 gtggtgctcg tcgacgatat ggttgatacc gccggaacat taactaaggc cgccgatgtc
     6361 atgatggagc acggtgcgct tagtgtccgc gccatctgta cacaccccat actttcgggt
     6421 aaggcttatc agcgcataga agagtctaaa ctcgaagaat taatcgtgac agactccatt
     6481 ccactgcgtc aatcaagcaa caaaataaga gttttgagct gcgccgattt tttcgccgat
     6541 gttatggttc gcgttaatga aaatgagtcg atcagctcta agttcatcat gtaatatttg
     6601 tttcatgaat tggaattgcc ggctaagatt ctaaccctcg cgacttgaat ccattaccct
     6661 gttagaaccg gttaaaaaac gggcgtacct ctagcaaaaa ccaaaataaa aatttacctt
     6721 tgccgccccg cagcgagaaa atctcgccat aagggtaatt tatttattaa aacaaaatga
     6781 aatcaattac aatcaacgga ctcgaaagag aaagcgtggg taaggtagca accaaggccc
     6841 tacgtaatgc tggaaaggtt ccttgcgtgg tatacggagg ggatgcgcct gttcactttt
     6901 cagcagatga aatcgcattt aaagacttag tttacacccc tgaggtacac accgtcgtaa
     6961 ttgcgcttaa taacggtact caggtagagt gtatcctaca agacattcaa ttccatccag
     7021 taaccgataa aatcttacac attgactttt atcaaatttt tgataacaaa gaagttaccc
     7081 ttgaaatccc tgtgcgtctg gtagggaatt ctcgaggagt gcgtaacgga ggaaatttac
     7141 gcatagtaaa tcgcaaactt cgcgttaagg ccttgccggc aaatcttcca gattttattg
     7201 aggcagacat taccgagatg cgtatcggac acaaaatgta catcgggacg atcgaacaag
     7261 aaaacttcaa aatcatgcat ccagataaca ccgttatctg tcaggttcgc acttctcgta
     7321 ccgccgttaa tgatactgat gatgaagacg aagatgaagc aagcgctgat gaggcggaag
     7381 ctccagccgc agaggctcca gccgagtctt aatttcaaat ttgagaattg tatttaaaag
     7441 catcctctaa cgggatgctt tttttatttt tacacctaga ttcttctgtt tttcaagaac
     7501 aaagtttgtg gccatgaaaa agtttcttat tgtgggttta gggaatatcg gtgcggacta
     7561 tacccatacg cgacacaata ttggctttca aattctagat cattttgcgg cgcatcatca
     7621 acttgattgg caaacagtca aactagggga tcgtgccgaa tacaaaataa aagggcgcac
     7681 ctttattttg attaagccga gcacctacat gaatcttagc ggaaaggctg tgctccacca
     7741 tttacgacaa gaaaaattag atcctagcca aatgttagtg attaccgatg atctcaattt
     7801 gccttttggc gccattagac tcaaggccaa aggaagtgat ggcggtcata atggcctaaa
     7861 agatattcag aacgcactgc aaaccacagt ttatccgcga tttcgttttg gaattagcaa
     7921 taccttcggc caaggacaac aggtggatta tgtcttggga aattggtccc ctgaggaaac
     7981 caatttaatg cccgagaggc ttcaaaaatc catagaaatc attccttcat ttggactaag
     8041 tgggcttgcc caaacgatga atagctttaa tggaacataa gatgcaggtt cataagcagg
     8101 tccaagaatt taacccagaa cgcgggagtg tgattaccat tggcaccttc gacggggtcc
     8161 atttgggcca tcggaccatc ctaaaaaaag ttgtgaatga ggccagggtc agagacctaa
     8221 atgccgtgct ccttacattt tttccgcatc ccagaatggt ggtgcaaaag caaaccgatt
     8281 taaaactact caatacctta gatgagaaaa tacaactcct cgaagtcttg ggggttgacc
     8341 acctggtgat tcaaccgttt acccaggaat tttcgaggct gactgccgtg gaatacgtgc
     8401 gcgatctatt ggtaaatcaa ctcaaggcaa aaaaaataat tattggatac gaccatcgat
     8461 ttggacgcaa tcgcacagct aatattgacg atttaaaaga atttggcttg gtttacgact
     8521 ttgaggttga agaaatctct gcccaacaaa aggacgctgt agccattagc tccacaaaaa
     8581 ttcgaaaagc gcttgcctta ggtgatgtcg atacagcgaa tacgtatctc ggaggggcat
     8641 atcccttaag cggtattgtg atcaagggtc aatccctagg tcaaacgtta ggttatccca
     8701 ccgcaaattt tgttgtcgcc gaatcctata aattattgcc aaaacaaggc gtttatctca
     8761 gttcggccgt aatcgatgga cacccctatt ttggcgtaac caatatcggg accaatccaa
     8821 ccgtcggcgg cgttgaccct cggatagaaa ctcatttttt ggcgctcaat gccgatcttt
     8881 acgaccggcc tttacaaatt aagctcctga gtagaattcg cgatcaaaaa atcttccctg
     8941 atttaagtgc tttgaaatca gctattgccg cggatattca acacgctact ggtctcattc
     9001 caaaattcaa gaacggtgtg gtttaagcct gttgacaata ttgggcttgt gctctggcga
     9061 atcgtttttg gcctgctcat cgccctagag tcattcggcg ccttaatcac aggatgggtt
     9121 aaagaagtgt tgatcgagcc tacttttacg tttagcttta ttggttttga gtggttgcag
     9181 ccgctgcccg gatggggtat gtacgcctat tacactttaa tggggctgag tggtttggct
     9241 attatgttcg gttatcgata tcgctggagt atgcttcttt ttgccctatt gtggaccggg
     9301 tcttacctga tgcaaaaatc agcctataac aatcattatt atctattatg cctgctctca
     9361 tggctcatgg tttttcttcc tgcggccaaa gacgtgtctt gggacaccct aaaaacaggt
     9421 aaacgaagcc ccctgatgcc tttttgggtc ctgattttga tgattggcca ggtgtggatt
     9481 gtcttcacct atgctgcctt ggccaagctt taccccgatt ggctggatgg caaagtcatt
     9541 gccctattca tggaaggcaa aaaaagctat ccgatcatag gcccatggct ccaagatgaa
     9601 ttgcttcaaa aaacacttat ttggggcggc atattttttg acgccttgat cattcctgcg
     9661 cttctttggc ggcgtacccg agtaatcgcc tttatcctat ccctgggatt tcatttattc
     9721 aattccattg tttttcaaat tgggatattt ccctacatga gtatcgcttt tgccttcttg
     9781 tttttctccc cgcagaccct acgtcaaaaa tttgggcgct ggatcacccg ctttgaaacc
     9841 cgagttcaaa acaagttaga ccaatcccaa tgcgtaaaac ggcagattca acacctcagc
     9901 ccggcaaaac aaccttggat tccggcactc attgtggtct atctcgtgat ccaagtgctg
     9961 cttccgctgc gccaccattt aataaaagac tctgttcttt ggaccgaaga aggccaccga
    10021 atgagctggc gcatgatgct cagggcccgc aaaggcatca cgagctttta tgtgatggaa
    10081 ccaggaacag gggtaaaatc cgtttatcct ttgcgcgatt tagtcaccca aaaacaactt
    10141 aaaatgcttt cttctcatcc agatttcatc tggcaaatgg cacaaaaaat taaagcaata
    10201 gaggccgaaa aaggacgtga ggtaggggtt tatgtgcgca gccgtgtcag cattaatgga
    10261 cgcgaataca gcccgttgat cagcccggag gttaatctgg ccgaggagcc ctgggatcct
    10321 tggagacacc atgactggat attgcccagt ccattttgag caaaaacgga caaagaatcc
    10381 cgtccgggcc ttaaaagcat ctaattttcg ctaaatttga cccgctaaat aaagctataa
    10441 tgttacaagt atcccagatt cgagagcaat acgatcaatc cattgaggcc ctagcaaaaa
    10501 gaggggttga tgcgcgtgaa gtttttgatc gcgtccttaa attggacgag caaagacgtg
    10561 ccacacaagc gcagttagac gaaaccttag cacagtcaaa tacattttca aaagaaatag
    10621 gtcagttgtt ccaaaatggc cagccgcaaa aggccaatat tctcaaggaa aaaacgaccc
    10681 agttaaaggc ccagtccaag gttttgcaag agcagctcag cgaatttgcc caggcccttc
    10741 aggaagtcct ttggacgatc ccaaacctac ccaatgcaat cgtccctgct ggcagtagtg
    10801 atcaagacaa tgaagtggta cttcaggagg gcgatattcc ttccttacac gaaggggctt
    10861 taccccactg ggaattggcc aaaatctatg acctgatcga ttttgagctt ggcgtaaaaa
    10921 taactggggc agggtttccc gtttataagg gctatggggc gcggttacag cgtgcgctga
    10981 tcgcttattt cttggacaaa aataccaatg cggggtatac tgaataccag gtgccgcact
    11041 tggtgaacga agcttcaggc tttggcacag gacaattacc cgacaaagaa gggcaaatgt
    11101 atcatgtcac tggggataac ctctatctca tccccactgc agaggtcccg gtaaccaatt
    11161 tatttcggga tgtattgctc aatcaaagcg atcttcctgt atgttgcacg ggttatacac
    11221 cttgttttag aagagaggcc ggaagttacg gggctcatgt gcgcgggctc aatcgccttc
    11281 atcaatttga taaggtagaa attgtgcgca tagaacatcc ggacaacagt tatcaggctt
    11341 tagaccaaat ggttggccat gttcaggaga tccttcgtga attaaattta ccgtatcgca
    11401 ttttgagatt gtgtgggggg gaccttggat ttacttctgc cttaacctac gactttgaag
    11461 tgttttctac ggctcaagac cgctggttgg aaatctcctc tgtatctaat tttgaaactt
    11521 tccaggcgaa tcgtcttaaa ttgcgcttta aggacaatga cgggaacaac aagctagcgc
    11581 acacactcaa tggcagcgcc cttgcactgc cccgtgtgat ggctggaatc ctagaaaatt
    11641 atcaaacccc tgatggaatt aaaatccctg aagtcctagt tccctattgc ggatttgatt
    11701 ttattccggc ccccgggaag taaggttttt tggcttgaat ccaaggtcat ctcaagacat
    11761 gtggtatctt taaggcatga gattctgggc ttacattttg ccaataatgt tgttttgtgc
    11821 cccaatttgg gcacaaaaag aggctctggc cgaaaattac tttgaacaag gagcctatga
    11881 taaagccttg agcctatatc agcgtttggt tgaagagcaa ccgcgtcaac caaaatacgt
    11941 gcttggactc gtgaacactt atcaggaact gagtcaattt gatgaggctg nnnnnnnnnn
    12001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12061 nnnnnnnnnn gatgaggctg aaaatctgct caaatcgaga cttcgcgagc ctcgaattta
    12121 tcccctttac tatattgccc tggcaaacaa ttttaacagg caacgtcaaa tagactctgc
    12181 acaattctat atcgacaagg cccttgatta cacctttgag cagcccaatt ataccgtttc
    12241 tatgggcaaa gcactaactg atctaagtct attgggtgcc gcgaaaatcc tttatcaggg
    12301 ggtcatgcag cgctatcctg aaaaggattt caatttacaa cttgcacgcg tctacgggga
    12361 gcttggcgcg ctggaaccca tgttcgaaac gtatttaacc ttgatggaat ccacaccaag
    12421 gtttataccc agtatccaac gctatcttga gacctatatc actgaagacc ccttaaatcc
    12481 cggcaatatt gaattaaaga ccgcattaat taaacgctta tcccaggggc aagaaccgct
    12541 ttacaacagt ctattgagtt ggctttttgc ccagcaaaaa gaatacggca aggcctttat
    12601 tcaagaaaaa gccattttta tgcgcagtcc tggcgacttg accggaatta aacaattggg
    12661 ctatgccgcc ttgaatgatc agcagccgat tatggccaaa accattttta gctttgtttt
    12721 agaaacggcc gtggacccta gagagcgtct tgcggcccat ttggagattt tacgcctgga
    12781 tagaagcatg aaacagcgcc cggcccaaga aattgaactg agctatactg aattaattca
    12841 gcaataccgg gcctttgacc tgacccaact caaattagat tacgcccact tacttgcctt
    12901 tgaccttgat caatcccaga aggccatcga cctgttggac agggccgcag aacgggccga
    12961 aaaatcatat gccgaaggac ggctgcgttt attgctcggc gatatcttgg tttttaatgg
    13021 gcaatacaat caagccctcg tgaattatgc cctagttcaa agtgtgctca aagatgatga
    13081 cttggctcaa gaagctaaat tcaaggaagc ccaaacaagt tattttcggg gggattttga
    13141 atgggcccaa acccaattaa aagtcttgaa atcttcgacg gctcaaaaaa tgtccaatga
    13201 cgccatagcc ctacatgttt tgatcaacga aaacaccctg gaagactcca cgcaaattgc
    13261 cttaaaaaag tttgccggtg cccagttact catgcatcaa aaaaaatatt ccagcgcaat
    13321 cgaagccttg aatacattgc agctgcagga gccaatggat cgactggccg atgatattct
    13381 tcataactta gggagcctct atcggctcac gcaagcccct gaactggcca aagtccaatg
    13441 ggaaacttta attcgtgaat accccgatag tgtctatatc gatgatgccc tttttgcctt
    13501 atcagagtta atgcttttgg aatttaaggc ccctgaacaa gcccaaaact atctagaaga
    13561 gatcatcttt aaccacgccg atagtatcta ttttatcgat gcgcaaaaac aatatcgaaa
    13621 actacgtgga gaccaaatca attaatttga cgcaaaaccg taaagcctgt gtacatttat
    13681 aacgttacca taaccctaga acccgaaata gaaactcatt ggcttgagtg gatgcagcaa
    13741 gtgcatattc cagagatgat ccaaaccggt aaattctcag gggccctgat gacaagggtc
    13801 attactgatc aagacttagg cggtccgact tattcagttc aataccgctg taaaagcaaa
    13861 gaaatactgc aagactatta tcgcgaagat gccgaaaaat taagagcacg aagcgcccga
    13921 tttgcgggca aatttattgc ctttcgcacc gaactcgatg tgatccaaga attctcatga
    13981 gtgtacgtcc taaaaaacat ctcggtcaac atttcctcaa ggatcgcagt atcgcccaac
    14041 gcatcgcgga attactcact ggtgttggct acgaacattt attagaaatc ggccctggta
    14101 ctggggtgtt aacacaatat ttaatcaata aaccatggca acttatcgcc cttgatttag
    14161 atcaagaatc tattgattat cttaacgagt attacacgcc aagtgaactt accgttcgct
    14221 acggggatgt cttaaaggac gattttacgg atttatttgg tgtgaatcct tttgccatag
    14281 tcggtaattt cccttataac atctcctcgc aaattgtatt taaaaccatt gaatggcggc
    14341 accaaatccc ggagttttgt ggtatgtttc aaaaggaagt agcccagcgc atctgtgccg
    14401 cgcctggaag caaaacctac ggtatacttt cggtgttaac ccaggcttat tacaaagccg
    14461 agtaccaatt taccgttccg cccggggttt ttcatccgcc cccaaaggtc gattctggag
    14521 tcttacgcct tacgcggcat gatgatctgg agcttccttg tgatgaggct ttgtttttta
    14581 aagtcgtgaa aaccagtttt caacaacgtc gtaaaaccct gcgtaacagc ttaaaaatat
    14641 tcaatatctc tcaaaaactc gaagaagata gtatctttgc gaggcgtccg gagcaattgt
    14701 ctgttgcgga attcattacg ctcacccaaa aaatggaaag cgatggcatt tcaactcact
    14761 cctgaattct tagagaacgt cgagcagttg gtcgcgcaaa aaaagcgcaa agccatacgt
    14821 gaccttatgg gagagtttca cttcgccgat cttgccgaag tgctcgatgc ccttgaaacc
    14881 gagcaagcga cttatctcgt aaaatccctt gaaagcgatg ttacctcaga ggcgctcatg
    14941 gagctcgatg acgacgttcg tgaaaaaatt ctgggtcgtc tttccccaaa tgaaatcgcc
    15001 agggaacttg aagaaatgga taccgatgat gctgccgatg tcgtgtcgga gctcgatatt
    15061 gcaatccagc aaaaggtaat cgaccgaatt gaggacgaag agcacgcagc agatattgtt
    15121 gaactcttaa aatatgacga ggataccgca ggggggctta tggccaagga attagttcgg
    15181 gtcaaagaca catggaccac agcgggctgt atccgagaga tgcgtcggca agcgaaaaat
    15241 gtaacccggg ttcattccat ttatgtcgtc gacaaagctg gggtactcaa aggtcgtttg
    15301 tctttaaagg atctgttgac cgcaccagaa cgtgcccgaa ttgccgatat ctatatccca
    15361 aaggttgatt ttgttaccga taacaccgaa ggcgaagagg tggcccgaat tatgcagaaa
    15421 tatgacctag aggccattcc tgtggttaat aatgctgggg tattgttggg gcgtgtaacc
    15481 attgacgata tcgtcgattt tattcgggaa gaagccgaaa aagattatca aatggctgcg
    15541 ggtattagtg gcgatgttga ggctgatgac agtctaggaa aattgaccaa agcccgttta
    15601 ccctggctgc ttatcggcat gtttgggggt attggcgctg ccagcattat cgatggattc
    15661 ggaaccattt taactgattt tcctaattta tttttgtttg tccccttaat tcaagccacc
    15721 gccggaaatg tcggggttca gtccagtgct atcgttgttc agggtttggc caacgacacc
    15781 cttaaaggaa atatcgcggg gcgcctctta aaagaaactg ctttggccct aattaatggc
    15841 ctgagtatcg cgttaattgt actgattttt agtcacttat tttttaatac gacttatctt
    15901 gagtccatca gcattggttt agctgtagtt gtcgtcattt taatcgcagc cctggtaggc
    15961 acctttgttc ccatgctcct ggataaaaaa ggcattgatc ctgcggtggc tacagggccc
    16021 tttattacca caagtaatga tgtttttggc atccttattt acttcttgat tgcaaaactc
    16081 atcttaggca tttagataca gtacatgaaa attcttcata ttgatcaaaa tcatcccgta
    16141 ttatggtcag agctcagtgt tcttggttat aaaaataccc agggctattc gctcacccga
    16201 gaagaagttt tatcgattat tgaatcgtat gatggggtcg tgattcgcag cagaatttta
    16261 attgaccgtg cgttcttaga cgccgcaaaa cagctcaaat ttatcgcccg cgttggggca
    16321 ggcctcgacg caatcgacac ggactatgcc gcggaaaaag gagtgcttct cattagcgcc
    16381 cccgagggga acagtaacgc cgtcggcgaa cacgccttag gcctattgtt gaatttactc
    16441 aacaatataa atcgtgcaga tcgcgaacta cgacagggcc tttggcggcg cgaacccaac
    16501 cgaggtcatg aactctcagg ccacacggta ggaattattg gctacggcca tatgggtaaa
    16561 gcgtttgcaa aaaccctgcg cggattggat tgccccgtta tctgttacga tatcaaaccc
    16621 gaagtcggtg accaaaacgc ccatcaagta accctagagc agttttttgc ccaagcacaa
    16681 gtggtgagcc tacacacccc tttgaccccg gaaacagaat ttatgattaa tgcagaattc
    16741 atcgagaaat tcgctcacaa tatttacctg atcaataccg ctcgagggcg ctcagtggtg
    16801 actcaagatc tagtcgcggc tttagaacgc ggcaaagtac tcggtgcagg actggatgtt
    16861 ttggaatatg agcatagctc ttttgaaaaa ctccacacgc aagagctgcc cgaggcactc
    16921 aaggtcttgc tttctttaga caatgtcatc ttatcaccgc atattgccgg atggacccat
    16981 caaagcaaag aaaaactcgc tcaagttatc gtagctaaaa ttcaaaacca ttttcccata
    17041 aaataacgct aaaaatgact ccggcggact ggaatcagcg ctatgaaggc ctattcaaaa
    17101 aatagagggg ctctttattg cgcctcggaa gactcgtgat acttgcgctc aagttccgct
    17161 tgaaactcct ccataacggg ttttaccgta ctctcaggca aatcggaaat acgaatatac
    17221 atnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    17281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    17341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnngcgt tttgtttgat gtatttttta
    17401 agtaaaacgg gcaaacgcag actgcccggc tccacctcat caataatctt atcaaacttg
    17461 tttaagtccg cttcggtggc atcaaaaatg aagtccttat ccccgtcctt gagttttacc
    17521 ttgtactctt ttttgggctt gacatattgt gctaaatagg ggtcataata attagatctc
    17581 atgaattcaa tcatgaggct cttgctgaat tcagaaaatt tatttgaaat actgaccccg
    17641 ccaataaggt atttatgatc cggaaaacgc agtgtggtgt ggacaattcc cttccataat
    17701 aaaaacaaag gcatggggcg ttgttggtag ctcttgacca caaatgcccg acccatttcg
    17761 atggattggg ccataaactc gtgaagttct ggttcaaatc taaagagttt ttgcagataa
    17821 aaaccattga ttccaaagcg cttgaatatg tcttgaccca gtcccattcg ataggctcca
    17881 gcgatttgac aggcttcatt atcccaaaga aataagtgat gataataggc gtcaaactga
    17941 tctaaatctg tggcgttatt ggtcccttca cccacttctc taaaagttat ctctcnnnnn
    18001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnacttctct
    18061 aaaagttatc tctcgcagtc gcccaatttc tttaaggaca taaggaattt gctcaggggt
    18121 cgccagaaag acttcgtagt ttttgctctc aagcagccta ctcgctccac gacgcagctg
    18181 ggccacttct gaagccatca gctctggggc tactgggcct tcaatagact ttggcgcctt
    18241 gggtaactta atagacttgg ggatttggtc taacaaaggc ttcttttggt agggattagc
    18301 caaaacatag gtctttttgc gcaaaaactt cgtgaatgac tccaaaccct gatgttcctg
    18361 ttggtctgcg accgaaatgg gccggccgat acgaacgcgt atcacccgtt gcttctgggt
    18421 caacagctct gagggtaatt ttgcggtacg cagggtatca ctgatgctcg ccattcgata
    18481 gaataatgga ctattttggg catgaaaata aataggaacc acaggcactt cagctttttt
    18541 aataagcttc atggccgcaa cctcccacgg cctgtcgacc aaaagtttac catcgcgata
    18601 ggtagaaacc tctcccgctg gaaagattcc gagtccgtgg ccctgctcta aatgcttcaa
    18661 cgcactttta aagcccgcta tacttcccgc tgccttttgg tgattctcaa aaggattaac
    18721 aggcatgaca tatggcttaa gcggctctat acgatgcaat aagaaattgg cgataatttt
    18781 gaaatgtggg cgatgttcta acaataattt caaaagcaga ataccatcaa tgccccctaa
    18841 aggatggttc gagatggtaa taaatggacc ggactttggc agtcgtttca aatcatcctc
    18901 cggaatttca aatttgattt gaaactcctc gagcaatcgg ttgatgaacg ccagatcact
    18961 caaatgcttg ttgcgatcat aaattttatt gagcgtagca atttttaaaa gtcgcataag
    19021 gccccagcct atggcggaac ccataaaccc gagatggtcc actttaatgg ccttggctac
    19081 ttcctttgca ttgactaatc ccactgcccc aattacgcta aatggttagt tgtaaagata
    19141 cacaatgatt gtgttagtcg acaccctgaa ggacaagttg cagggtattt ccactttctt
    19201 ggcgcaacag cacttctcgc cctttaacgg ctgcttgaat cattttagcg ggcgcatgac
    19261 gcaaggtcaa tagcgttact cgaggctgaa ctagaacttg aaagcgtttt tgaagctggg
    19321 ccaccagttc gggcaatcgg ttgtatttgt tgtccacaca gactgaaaaa ctaatggctg
    19381 aattttgaat taactcaacc ttcatttgat aagcatgaag ccatttgaac acatcaccga
    19441 tatgatcctc catcatgaaa ttaaaatcca aggccgataa ttgaattaaa acctgttgct
    19501 ccttttttat aatgcagcct accaaaggct tcaaatcagg gcccttgcct acgcgggttc
    19561 cttttgcctt tgggtcgtta aatggccgaa caaataaggg aatttccttt cgctgcagcg
    19621 gctgcagggt tttggggtga atgactgatg ccccgtaaaa agccaactct atggcttcgc
    19681 tgtaagcaat attttcgagc aaaaccgttt cactaaaaaa gcgcgggtca gcactcagca
    19741 ccccgggcac atccttccat atagtcacgc tcaaggcatt aagacagtag gcaaaaatcg
    19801 ctgcggtata atcgctgcct tctcgaccta aagtcgtggt aaaattatgc ttggtttcac
    19861 ttcctaaaaa tccctgagtc aagctaattc cttttggatt aatcaccgat tttatcgcct
    19921 tttgcgtggc cgtccaatcc accacacctt ctcggtaggt cgcatctgtt ttgatacaac
    19981 tgcgcacatc gagccagctt aaatcaatgc ctgaatcgag gcaataatga ccgacgatgg
    20041 tcgtcgagag taattctcca taactgacga tctgatcgta aacaaaggcg tgatcggttg
    20101 ctttattctg tcgaataaaa tcactgagtc cctgacgtag tcccgatatg gccttaaata
    20161 ctggatgact cggttggtca aataattcac gggtaatgga caaatgtttg gaaaaaatct
    20221 cagcgatatg ggcgtcacaa tctggattgt tactcaagta gcctcgaacg acctcttcga
    20281 gtgcattcgt ggtttttccc atggccgaaa ccacgacaac aagaggctct ttttgggtca
    20341 attttaaaat atggaccact tgttttaccc cgttggcatc tttcaccgat gcgccaccaa
    20401 atttatatac cttcatgact cgagatagga ttcaatggct tgatcctcca tagacaccac
    20461 atgccaatgt tttaaaacat ctgctccgga cttttcatag aaatcaatag ccggagtatt
    20521 ccagtcgagc acctcccaat taacacgacg caccttgcgc gcacgcgcat gggacaacac
    20581 tgcgcgatac aaggcagtcc ccacgccacg gccgcggaat tcttcttgca ccatcaaatc
    20641 ttccaagtgt atcgtcggac ccttccatgt agaatagcga ttgtaaaata aagccatccc
    20701 gacaatcttg tgcgccactt cagcgacaaa acaccaaaac tttgggtctg atccgaagcc
    20761 atctcggatg agatcattgg cagtgatcac cacttgatct ggttcctttt caaagtctgc
    20821 cagtccttga attaatccca tgattgcagg ggtgtcatct tttacagcaa ggcgaattaa
    20881 gggttccata atggcagttc taaggcaaat atcggatgta tttattaaaa ttcccgatat
    20941 ttgtcttgat ttcctaacca aatcttatgg ctgttcaaaa gaacaaaacc ctcggagaat
    21001 tcatcattga aaaccagagt gaattccaat actcctcggg cgaattatca cgcctaatca
    21061 actccatacg cctggccgct aaggtggtca atcacgaagt taataaagct ggattggtcg
    21121 atattatcgg gcaggccggt gaggtcaatg tccaaggtga agatcagcaa aaactcgacg
    21181 tctttgccaa tgaaaccttt attaacacca tgaccaatcg agaaattgtt tgcgggattg
    21241 ccagtgaaga agaagaagat ttcatcacta tccaggggcg taatggacag aatgaaaata
    21301 aatatgtggt cttaattgat cctttagacg ggtccagcaa tattgatgtc aatgtctctg
    21361 tggggacgat tttttcgatc tacagacgcg tgactcccgc ggggacgcct gtttctttgg
    21421 aggattttct tcaagcgggc aatcgacaag tggcggcggg ctacatcatc tacggcactt
    21481 ccaccatgat tgtgtattct acgggacacg gagtaaacgg attcaccttg aatcccgctt
    21541 tgggcaccta ttacttgtcc caccccaacc tcagctttcc ggaaaacggc caaatctact
    21601 cggtcaacga agggaattat gtgcatttcc ctcagggcat taaagattat atcaaatact
    21661 gccaaaaaga agaagaaaat cgcccctaca cctcgcgtta cattggttct ttagtgtccg
    21721 atgtgcatcg caatatgatc aagggcggca tttatattta tcccaatacg gccaaagatc
    21781 ctcaaggaaa actcaggctc ctttacgagt gcaaccctat ggcattttta atcgaacaag
    21841 ccggggggaa agccagtgat ggttaccgac gtattttgga tatacagccc acagaattgc
    21901 atcaaagaac cccgtttatt ggcggcagtg cttcaatggt tgaaaaggct gagtccttta
    21961 tggggcttta tccagaaacc acgccccaat aagatcaagg ggtaaaaata ttaagggcta
    22021 aagcgaactc ctttattttt tgttcagcag atattgataa tcttccaaat ccaatcctcc
    22081 agagaaaata tcgatcgaac gcttgatcag tgccttcgca tcctggtcgc tatagccaag
    22141 accgatggca taacgatgaa ctagaagttc ctcatgggcg tcgatatggt ggtccgccaa
    22201 aatcaactta aataaatcca gcatacgctc taaacgtttg gtcgccgagg tcggtgggtt
    22261 aatcgggtat tttttggggt ctttaagcac ttcttggtat tccgcatcgg taatgtcaag
    22321 cttgcgggca aagcgttgta agatcgccaa ttcagattca aggattcctg agtgactttc
    22381 agcaaggtat actaatgaag caaaatgacc taaattactg cggtgttctc cgctctcgaa
    22441 taaatctgta aatgacatgt cgtttgttta gactacaaat ataaaatttg tcgcgcagat
    22501 atcttttttt tacggcctca aaaattaacg ggattgtttt gaagtaatga cccagttatt
    22561 atctttgtcg cccgatggtg cccagccgca tatcctcatt atttgaacag tctttgccct
    22621 ggcaaaaatt gaggcaacgc ctatctgaaa atcaccgtat tacccgcgtc tcgggtctgg
    22681 ttggctctgc acaaagcctc atcatctcta aaatattttt acaggagcaa aggcctgtgg
    22741 tctgcgtcat gaacgacaaa gaaacggccg cctatttact caatgacctg gaggggctgc
    22801 tggatcaaga gcaggtctta ttttaccctg ggagttatcg ccgaccgtat caaattgaag
    22861 agaccgacaa caataacgtc ttgatgcgct ccgaggtgct cacccatttg agtagccgaa
    22921 aaaagcccgc cctgattgtc acttatccca cggcattgtt cgaacaggta gtgacgaaaa
    22981 aaacattgaa gcaaaacacg atcaaacttg aaacagggga gcaactcgat gtagacggac
    23041 tcaatgagct gctgtttgag gcgcagttta agcgggtgga ctttgtgacc gaacccg
//
LOCUS       DPUP01000169           15725 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9744,
            whole genome shotgun sequence.
ACCESSION   DPUP01000169 DPUP01000000
VERSION     DPUP01000169.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15725)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15725)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15725
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..574
                     /locus_tag="DHV98_06280"
     CDS             <1..574
                     /locus_tag="DHV98_06280"
                     /inference="COORDINATES: protein motif:HMM:PF05430.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK05959.1"
                     /translation="RRSSDLSTRHLSILEMGFGTGLNALLTLLYLQDDLQEQFEFENK
                     NISFSVNYDALEAFPLTPDHYQTLDYPKHLNSPDALFRKLHEVPWDLPNEISKGFTLF
                     KQNRHFEDFVADQAYDLVYYDAFGARVQPELWEIERFLALYKALRPHGVLVTYAAKGS
                     VRRALQEVGFMVERLPGPPGKREMLRGTKI"
     gene            660..1562
                     /locus_tag="DHV98_06285"
     CDS             660..1562
                     /locus_tag="DHV98_06285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HCK05960.1"
                     /translation="MRVLIAGATGLIGKPLVVALLERGDEVRFLTTDNQKKNSLNGAQ
                     GYYWDPKNHFCPKEALEDVDVVINLAGTSVSLPWTKKRKNEILQSRLDTAKALKLALK
                     HQDQKVHYIGASGISGYASSYSLNYTDQDQTYGSGFLAEVVRQWETATHQGHGKNVHS
                     AAVRTGLVLAKNGGVLPTIIKPIKYRVGAILGSGKQWQSWIHIDDLVRIYLWVIDNDF
                     NGNINAVAPKPVTHEKMTQVLAQHLRRKLWLPAVPASVLRLLLGERSSLLLDSHWVLP
                     EILVQAKFDFKFGKIRLAFTDLLT"
     gene            1635..2213
                     /gene="grpE"
                     /locus_tag="DHV98_06290"
     CDS             1635..2213
                     /gene="grpE"
                     /locus_tag="DHV98_06290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HCK05961.1"
                     /translation="MSKKTKKAQDQTVETPQEGTQQEHNQNNAAEQNDIESKESNHEA
                     SNEPSPEDALGLEKDRYLRLFAEFENYKRRTSKERIELFKTASHDVMVALLPVLDDFD
                     RAIKELEKSDDALFAGVALIRNKFFETLKQKGLALIDTQAGTTFDADLHEAITQIPAP
                     NPDMKGKIIDVIEKGYMLGEKIIRYPKVVIGQ"
     gene            2215..3401
                     /locus_tag="DHV98_06295"
                     /pseudo
     CDS             2215..3401
                     /locus_tag="DHV98_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781135.1"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
     assembly_gap    3199..3280
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    3402..3613
                     /estimated_length=212
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3754..4683
                     /locus_tag="DHV98_06300"
     CDS             3754..4683
                     /locus_tag="DHV98_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013751508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK05962.1"
                     /translation="MALLEVNEVSKSFGDFKALDQVSLSVPKGSIFGLLGPNGAGKTT
                     LIRIVNQITMPDQGRVFLDGAPLAPHHISDIGYLPEERGLYKSMKVGEQALYLAQLKG
                     MAKSEAKAQLKMWFERLEIGHWWDKKIQELSKGMAQKIQFVVTVLHRPKLLIFDEPFS
                     GFDPINAQVIQKEILRLRDEGATVIFSTHRMESVEELCDHIALVHQSKKILDGNLTEI
                     KRAHLSNRYKVGIECADPEQTLKAIGAKFNIVPSTFKSVYKGVQFSLQLADKDHPNEV
                     ITGLSPYGIIYHFVAEVPTANDLFVQAINQDKR"
     gene            4732..6039
                     /locus_tag="DHV98_06305"
     CDS             4732..6039
                     /locus_tag="DHV98_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCK05963.1"
                     /translation="MKHLGLIITREYLNKIRNKSFVVMTFLSPLLMVALISVVTYLSS
                     MNNDTIKDIKVLDQSGYFGHLFEDRQQLRFEILPDMELDQAKTLAEATAAYGLLYIPK
                     VDSIAALGKGITFYSADTPALGVTVAIERLLQRQANALVLRENGIDDKAIEALYFNVS
                     TQLETFAGQETSKLGSGLKLVFGGAAGYLLFMFIIIYGNMIMRSVIEEKTSRIIEVII
                     SSVKPRALMLGKIFGTTLAGITQFAIWVVILGVFSIIASGVLGLELGSGVSMAQDAAQ
                     LGDAASQEMAVAVAKEIWQLPLTNLVVMFFLYFIGGYLLYASFYAAIGAAVDSETDTQ
                     QFLLPILMPLIIAVYVGVFTVIEDPHGTVSQVFSFIPLTAPVVMLMRIPFGVPLWQQI
                     FSVLLLFITFMGTVWFAAKIYRVGILMYGKKPSYKELIKWLKY"
     gene            6024..6947
                     /locus_tag="DHV98_06310"
     CDS             6024..6947
                     /locus_tag="DHV98_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel protein MscS"
                     /protein_id="HCK05964.1"
                     /translation="MVEILIQDTEQELAQTIKRNVWEAILDILNWGFHWGEGANHIKI
                     TVGTLLLVIFAFVATSYVLGLVRKLYTRNLNETDTHKFISVFKFIKYLSYVIVVFAVL
                     SFSGVNVTPVLAASAALLVGVGLALQELFQDVLGGVFIMLDKSLQAGDIIEVEGKVGR
                     VVDIRLRTTRAITRDDKVLIIPNHKFISDTVYNYTQNHKQTRETVSVGVAYGSDTTLV
                     KTLLLKSLEKDSRISARPKPFVLFEDFGDSALMFSVNFFVTDSFTDPMVKSDIRFRID
                     QLFRENNISIPFPQRDVHLFTRPTQELPKTD"
     gene            6950..8116
                     /locus_tag="DHV98_06315"
     CDS             6950..8116
                     /locus_tag="DHV98_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HCK05965.1"
                     /translation="MPKILIVEDEAAIRRVLSKILKEEDAAYDVFEAEDGRRGLEMIQ
                     SQEFDLVFCDIKMPVMDGMELLAAMQEQYSEIPVVMISGHGDIEVAVEAMRIGAFDYI
                     SKPPDLNRLLNTVRLALDRKQLVVTNNRLSKKVARKYTMIGSSQALDRIRSMIEKVAP
                     TDARVLVTGPNGSGKELVAHALHAQSARAKGPMIEVNCAAIPSELIESELFGHVKGAF
                     TSAVKDKAGRFESANGGTLFLDEIGDMSLSAQAKVLRALQEQKIQRVGSDKDIKVDVR
                     VLAATNKDLVHEIKESRFREDLYHRLAVILIDVPGLNERNGDIPELVGHFCTQIATEQ
                     GAPIKIFDDKALALLESFDWTGNIRELRNVVERLIILGGPKITEEDVRAFAQKK"
     gene            8138..9556
                     /locus_tag="DHV98_06320"
     CDS             8138..9556
                     /locus_tag="DHV98_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M28 family protein"
                     /protein_id="HCK05966.1"
                     /translation="MKNSISVVLLAVFSLATTRLHAQESTADAQMLRKIYDMALTEGK
                     AYDWLDHLSNEIGGRLSGSLEAEKAVQYTKEVMQEIGLDSVWLQPVMVPKWTRGVPEY
                     SYIETAPGISSVVNVCALGGSVSTPDGGLKAEVIEVKGIEELEALGRDAIEGKIVFYN
                     RPMQANLIHTFEAYGGCVDQRYSGAKEAAKFGAVGVVVRSMNLRQDDLPHTGAMSYDD
                     LPVSKRIPACAIATNDANYLSTAIKLKPDLLFYFNQTCRVFPDVQSYNVIGEIRGSEF
                     PNNYMVVGGHLDSWDLGDGSHDDGAGCVQSIEVLRLLKKMNYKPRHSIRVVMFMNEEN
                     GLRGGRKYAEEAQIKKENHVFALESDSGGFTPRGFSIDADSDNMDQIQSWVPLFKPYL
                     IHYFEPGGSGADIGPLKKDGMVLAGLRPDSQRYFDHHHASNDTFDAVNKRELELGAAT
                     MTSLIYLMDKYGTKTEYTNIPK"
     gene            9567..10967
                     /locus_tag="DHV98_06325"
     CDS             9567..10967
                     /locus_tag="DHV98_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HCK05967.1"
                     /translation="MPLERYTREFGYNLRLAGPVILGMLGHTLVAFVDNIMVGQLGTA
                     ELAAVSLGNSFMFVAMSLGIGFSTAITPLVAEAEGEGNFSRGKIAFKHGLVLCTLLGL
                     LLFTSVFFAKPLMYLMKQPEEVVILAMPYLTYVAISLVPLIIFQAFKQCSDGLSLTRY
                     PMYATLVANVVNVVLNYCFIFGHFGAPALGVVGAAIGTLASRVIMIWVLWWLLAHHQK
                     AKWYVRHLRFKLLSSRVFKKILHLGFPSAMQMFFEVVFFTAAIWLSGLLGKNPQAANQ
                     IALNLSSMTFMVAMGFSVVAMIRVGNQKGKGEFSELRRIAFSIFLLSLIFALLFAVVF
                     FTFNHWLPTMYLDMNNLDQWADNNEVLEIAKSLIIIAALYQISDAIQVVALGALRGLQ
                     DVFYPTIYTFISYWIIGFPTSIYLGMYTPLGITGIWIGLLSGLVAAAATLLWRFNRLS
                     KRLIGEGPASLSIENS"
     gene            10996..11232
                     /locus_tag="DHV98_06330"
     CDS             10996..11232
                     /locus_tag="DHV98_06330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05968.1"
                     /translation="MELPKFLLGDNTDTPDAIYVIHTEFPRFIINLVDDQIEWFEEFD
                     SEDLKELEEEMARCIDQASEFYDREMAHYENSDD"
     assembly_gap    11539..11583
                     /estimated_length=45
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <11584..11879
                     /locus_tag="DHV98_06335"
     CDS             <11584..11879
                     /locus_tag="DHV98_06335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013997557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05969.1"
                     /translation="AHAASSAALASFLIRLIKYHRGRPSVWSQGFISKVIALFTPRFW
                     IVLLLIWAAALGYSRIYLGVHYPFDVLTGWFVGLAVGGFVFYPLQLWLIRRFS"
     gene            complement(11882..>13410)
                     /locus_tag="DHV98_06340"
     CDS             complement(11882..>13410)
                     /locus_tag="DHV98_06340"
                     /inference="COORDINATES: protein motif:HMM:PF13231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05970.1"
                     /translation="EMIVEGNWLLTTINGEPRYQKPPLPTWLTAFSALIFGLKSIAAL
                     RLPAAIMGLFTVMISYALALKFTRNKAYALWSGLILSTSFYMVFAGRNGQWDIFTHSF
                     MMGGIFCLYQLFAHPKSRWTYALLAGIFFGASFMSKGPVSLYALFLPLVLAKAIVSGL
                     RNLKANVGPLFLVLLVGLVTALWWHAYINIVDPENLKAITEKETTNWTNYNVKPFYYY
                     WSFFIQSGLWTIPAVLSLAYPYLKKRVFHGKAYALSFWWTVCAVVLLSLVPEKKPRYL
                     LPVLIPLAFNIGFLVLYALKQFKTMSPWLRIPLQIHFGVLGLVGLAVPAGAWLILGAS
                     LSPYMIWFVLTAIGLALSATLILYGLIKQQIQWSFRGSIAMIVVIVLFGLPLAPAISQ
                     NPEFKPXLRLLAEWERKNQIKVYEFGGFTPEMVWDFGKPIPGLIINDKFIQPKDSVFG
                     VLVSQDNLVQFKRQFKEDQLELVDRFDMNPQGPGQRTHRPRLWRDFFIVRTVNKKSQK
                     "
     assembly_gap    13411..13462
                     /estimated_length=52
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(13588..14214)
                     /locus_tag="DHV98_06345"
     CDS             complement(13588..14214)
                     /locus_tag="DHV98_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl acyltransferase"
                     /protein_id="HCK05971.1"
                     /translation="MSQGLIYSIGFLAQLLFSARLFVQWFLSERQKRVVTPSLFWQLS
                     LLASFLLFVYGYLRQDFAIMLGQSLTYYIYIRNLHFQGQWRKAPIAVRYFLLLFPLMV
                     VWYGYNNGAYDRELLLNNSAIPDWLFWLGVSAQLIFTFRFIYQWWYSEQRKTSHLPKG
                     FWRLSALGAMMIIAYALYRKDPVLLVGHGSGLIIYLRNLFIGKNESGD"
     gene            complement(14211..14924)
                     /locus_tag="DHV98_06350"
     CDS             complement(14211..14924)
                     /locus_tag="DHV98_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dolichol-phosphate mannosyltransferase"
                     /protein_id="HCK05972.1"
                     /translation="MNYALTIIVPVYNEQDNLQRLEKELLKYLEIAAKPACVLLVNDG
                     STDDSLLMMKETCKRNPAFSYLSFVKNCGLSAAIKAGFDAATTPWVGYIDSDLQTDPE
                     DFNALLAHAETYALVTGVRANRKDSFVKNMSSKIANGIRRAFTHDGMDDTGCPLKIIR
                     TDCAKKIPMFKGLHRFLPAMILLQNEKIIQIPVRHYPRIAGQAKFGVWNRLLGPLMDC
                     FAYLWMKKKYINYQVKEQG"
     gene            15018..>15725
                     /locus_tag="DHV98_06355"
     CDS             15018..>15725
                     /locus_tag="DHV98_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-beta hydroxysteroid dehydrogenase"
                     /protein_id="HCK05973.1"
                     /translation="MKILVTGAAGFIGSHTAERLQAMGHEVIGWDNFSNYYDVALKEH
                     TAKTLESQGIVMHRVDLVNDDLRAIWPEGVAYVFHFAAQPGISQSSTFEAYLDNNFLG
                     TQRLLSVLELLDQPPYLVNIATSSVYGLVATKDESSAPEPASWYGVTKLAAEQLVLAY
                     VRRGFIKGTSLRLYSVYGPRERPDKLYTRLIDCGLNQKEFSLYQGSEQHRRSFTYVGD
                     IVTGIVAVMDTAQACSGE"
BASE COUNT         4230 a         3169 c         3655 g         4278 t
ORIGIN      
        1 acgacgctct tccgatctat ctacgcgcca cctttccatt ttagaaatgg gctttggaac
       61 cggactcaat gccttgctca cgcttttata tttacaggac gatttacaag agcagtttga
      121 gttcgaaaat aaaaacatct cattttcagt aaattatgat gctttagagg catttccttt
      181 gacgccagat cattatcaga ccctagatta ccccaagcat ttaaatagcc cggacgcctt
      241 atttagaaaa cttcatgaag tcccttggga cttgcccaat gaaatctcta aaggctttac
      301 actgttcaaa caaaataggc attttgaaga ttttgtggcg gatcaagctt atgatttggt
      361 ctattacgat gcttttgggg ctcgtgttca gcctgaactt tgggaaatag agcgattttt
      421 ggccctgtac aaagcccttc gtcctcatgg cgtcttggtt acttacgccg ccaaaggcag
      481 tgtacgccgg gcgcttcaag aggtcggttt tatggtggag cgcttaccgg gtcctccggg
      541 aaaaagagaa atgctccgag ggacgaaaat ttaacaatta ttattacttt ttaactgttt
      601 aatagcccag aggtcattgc tcaagagcgg cggttacatt aacttcgcga aaaaataaaa
      661 tgagggtact tattgcgggg gcaacaggat taattgggaa acctttagtc gtcgctctgc
      721 tagaaagagg cgatgaggtt cgttttttga ccacagacaa tcaaaaaaag aatagcctta
      781 acggtgccca aggatattat tgggatccaa aaaatcattt ttgccctaaa gaggccttag
      841 aagatgttga tgtagtcatc aatttggcgg gaacttcagt gtctttgccc tggaccaaaa
      901 agcgcaaaaa tgaaatttta caaagccgac tggacaccgc caaagccctt aaactcgcct
      961 taaaacatca agaccagaag gtccactata tcggggccag tggaatttca ggttatgcct
     1021 cgtcttactc attaaactac actgatcaag accaaaccta tggttcaggt tttttagcag
     1081 aagtggttcg ccagtgggaa acagcaacgc atcagggaca cggaaaaaat gtgcatagtg
     1141 ctgccgtgcg tactggatta gttttggcca aaaatggtgg ggtccttccc acgatcatca
     1201 agccgatcaa atatagggtt ggggctattt tgggttcagg aaaacaatgg caatcttgga
     1261 tccatattga tgatcttgta cggatttacc tttgggttat cgataacgac tttaatggaa
     1321 acataaatgc cgtagcacca aagccggtaa cccacgaaaa aatgacccag gtcttggcac
     1381 agcatcttag acgaaaactt tggttgccgg cagtgcctgc ttccgtatta cgtttactgc
     1441 tcggtgagcg atcgtcccta ttactggaca gtcattgggt attgccagaa attttagtcc
     1501 aggccaaatt cgattttaaa tttggaaaaa tccgacttgc gttcacggac ttgttgacgt
     1561 agtgacattt tgacatttta cttgttgtgg caataaattt gcttctaaaa agaagtcaaa
     1621 catttttaaa gtcgatgagt aaaaaaacta aaaaagccca agatcagacg gttgaaacgc
     1681 cgcaagaggg gacgcaacaa gagcacaatc agaataatgc ggctgaacag aacgatatag
     1741 aatctaaaga atccaatcac gaagcttcaa atgaaccctc acccgaggat gctttgggcc
     1801 tagaaaagga ccgctatctg agattatttg ccgagtttga gaattataaa cgccgcacaa
     1861 gcaaggagcg tattgaatta tttaagacag cgagtcatga tgtcatggtg gccttacttc
     1921 cagtcttgga tgattttgat cgagcgataa aagaacttga aaaatcagat gatgctttgt
     1981 ttgcgggggt ggcgctcatc cgaaataagt tctttgaaac ccttaaacaa aaaggcttag
     2041 ctttgattga cactcaggct ggaactacct ttgatgcgga tttacatgag gcgattaccc
     2101 aaataccagc gcctaatcca gacatgaagg ggaaaatcat tgatgtaatt gaaaaagggt
     2161 atatgctggg tgaaaaaatt attcgctacc ccaaggtagt gatcggacaa taatatgaaa
     2221 gaagattttt acgcaatatt aggcatttca aaaggcgcta gtgccagtga aatcaagaag
     2281 gcttatcgca agaaggccat tgaatatcat cctgataaaa accctggaga cacaaaggct
     2341 gaagaaaact ttaaaaaggc cgcagaggct tatgaggtgc tcagcgatcc cgataaaaag
     2401 gcgcgctacg atcaatttgg tcatcaggcc tttgaaggtg gtggttttgg tggtggtggc
     2461 atgaatatgg atgacatatt cagtcagttt ggcgatattt tcggtggcgc cttcggtggt
     2521 ggatttggcg gtggatttgg tggcggacag cgccgggcca aaggcagtaa tctgcgcatt
     2581 cgggtaagtt tgagcctcga ggaaattgcc cagggcgttg agaaaaaaat taaagtgaag
     2641 cgcaaaaaac aagcgccagg caccacctac aaaacctgca gtacctgtca aggacaaggc
     2701 caagtcacga aaattcaaaa caccattttg gggcgcatgc aaacggcagc cacctgtggt
     2761 acgtgtcgcg gtgcgggtca aattttggat tatagaccag ccgaggccga tgctgatgga
     2821 atgatggtca gcgaagaaac ggtttcaatt aaaataccgg ccggagtggt tgatggaatg
     2881 caactcaagg tttcaggtaa aggtaatgac gccccgggtc aaggtatttc aggagattta
     2941 atcgtagcca ttacagaaga ggaccatcca ctgttgcaaa gagagggaga taacctgcac
     3001 tatgacttat acgtgagcct ttctgatgcc gttttgggaa cgtccaaaga aattgagacg
     3061 gtttccggta aggttcgcat caaaattgat cccggtgctc aaagtggaaa aatcctgcga
     3121 ttacgcggta aggggatccc tagtgtccaa ggatatggag tcggggattt gttggttcac
     3181 ctcaacgttt ggaccccann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ggaccccaaa aaccctgtct
     3301 aaagagcagc gcgatttctt tgaaaaaatg aagaatgacg agcattttat gcccaaacct
     3361 gaaaaagaag acaagtcctt ttttgaaaag gtaaaagata tnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnntttcata gcaatttttt ttcccaccct aagtcattcg atttagggtg
     3661 ggttttgttt atatacgccc tattttcttc gcagatgaat tacctttacg gggtaattat
     3721 actcttatca aagcgcgatc aataatttga gttatggcat tattagaagt aaatgaagtt
     3781 tctaaatctt ttggcgattt taaagcactg gatcaggtca gtctctctgt ccctaaaggt
     3841 tctatttttg gcttactcgg gcccaacggg gcaggtaaga cgacattaat tcgtatcgtt
     3901 aatcaaatca ctatgcccga tcagggtcgt gtgtttttgg atggtgcgcc actagcgcca
     3961 catcatatta gtgatattgg ctatttgccc gaggagcggg gactctataa atccatgaaa
     4021 gttggggagc aagcactcta cctggcgcaa ctcaaaggca tggctaaatc agaggcaaag
     4081 gcccagctca aaatgtggtt cgaacgtctt gaaatcgggc actggtggga taagaagatt
     4141 caagagttat ccaaagggat ggctcagaaa atacagtttg ttgttaccgt attacaccgg
     4201 cctaaacttt taatttttga cgaacctttt agtggctttg atccgattaa tgctcaagtc
     4261 atccaaaagg agattttgcg cttgcgcgac gagggcgcta ccgttatttt ttcaacccac
     4321 cgaatggaat ccgtagaaga gctctgtgat cacatcgcct tggttcatca atcaaaaaaa
     4381 attctagacg gtaatctgac tgaaattaaa cgggcgcacc tgagtaatcg ctataaagtg
     4441 gggatcgaat gtgctgaccc tgagcagacg ctcaaagcga tcggggcaaa attcaatatt
     4501 gtgccaagta cttttaagtc ggtctataaa ggggtacaat tcagcctaca acttgccgat
     4561 aaggatcatc ccaatgaggt catcacaggg ttaagtcctt atggaatcat ttatcatttt
     4621 gtggcagagg tccctacggc caatgattta tttgttcaag ccataaatca agacaagaga
     4681 taaaacaaag aatgcttttc atccaagcga taatcattaa gtaacagatt tatgaaacac
     4741 ctaggtctta tcataacaag agaatatctc aataagattc gcaacaaatc ttttgtggtc
     4801 atgacttttt taagtcccct gcttatggtc gcattaattt ctgtagtgac ctatctctca
     4861 agcatgaata atgacacgat aaaggacatt aaagtcttgg atcaaagtgg ttattttggt
     4921 catctttttg aagaccgcca gcagttgcgc ttcgagatct tgccggacat ggaactcgat
     4981 caagccaaaa cgctggccga ggcaactgcc gcctatggac ttctttatat tccaaaggtt
     5041 gattcaattg cagccctggg caagggcatt accttttata gtgctgacac gcctgcgtta
     5101 ggggtaacgg tcgctatcga gcgcttgttg caacgacagg cgaatgcctt ggttttgaga
     5161 gaaaacggta ttgacgacaa ggccatagaa gctttgtatt ttaatgtatc cacccaatta
     5221 gaaacctttg ccggtcaaga aacttctaaa cttggttcag ggttaaaact cgtttttggg
     5281 ggtgcagcgg gctatctgct ctttatgttc atcattattt acggtaacat gatcatgcgc
     5341 agtgttatag aggaaaaaac aagcagaatt attgaggtca ttatttcttc ggttaagccc
     5401 cgtgctttaa tgttgggaaa gatctttgga actaccttgg caggaataac acaatttgct
     5461 atttgggtgg taattcttgg tgtgttttca atcattgctt cgggcgtact tggccttgaa
     5521 ttgggctctg gggtcagtat ggcccaggac gcagcacaac tcggtgatgc ggcttctcaa
     5581 gaaatggctg tggccgtggc caaggaaata tggcaattgc ccttaacgaa tcttgttgtg
     5641 atgttctttt tgtatttcat aggaggctac cttttgtacg cctcttttta cgcagccatt
     5701 ggcgctgcag tggatagtga aaccgatacg cagcagtttt tattgcctat tctcatgccg
     5761 ctgatcatcg cggtttatgt gggcgtattc acggtgattg aagatcctca tggaaccgtc
     5821 tcacaggttt ttagttttat tccattaacc gctccggtgg tgatgcttat gcgcatccca
     5881 tttggggttc ccctgtggca acaaattttc tcggtgctgc ttttatttat tacctttatg
     5941 ggaacggtct ggtttgccgc aaaaatctac agggtaggta ttttgatgta tggaaaaaag
     6001 ccgagttata aagaactaat taaatggttg aaatattgat tcaagatacc gaacaagagt
     6061 tggcccagac catcaaacgc aatgtttggg aagccatttt agatattttg aattggggct
     6121 ttcattgggg tgaaggcgca aatcatatta agatcaccgt aggcacactg cttctggtca
     6181 tttttgcctt tgtggcgacg agttatgtct taggcctggt gcgtaaactc tacaccagaa
     6241 atcttaatga aaccgacacg cataagttta tcagtgtatt taagtttata aaatacctgt
     6301 cttatgtgat cgttgttttt gcggtgttga gcttttctgg agtcaatgta acccctgttc
     6361 ttgccgcgag cgcggccctt ttggtcgggg ttggtttggc cttgcaggaa ctttttcaag
     6421 atgtccttgg gggggtgttt atcatgttgg ataagtcgct ccaagcgggg gatattattg
     6481 aagttgaggg taaggtaggc cgcgtggtgg atattcgact gcgcacaacg cgggcgatca
     6541 cacgtgatga taaagtcttg attatcccga atcataaatt tatttcagat acggtataca
     6601 attataccca aaatcacaag caaaccagag agacggtttc agtgggtgtc gcctatggca
     6661 gtgatacaac cttggtcaag acacttttgc tgaagagttt agagaaagat tcgaggattt
     6721 cagcccgccc taaacccttt gtgctctttg aagactttgg agattcggca cttatgttta
     6781 gcgtcaactt ttttgttacc gatagtttta ctgatcctat ggttaaaagt gatattcgtt
     6841 ttagaatcga tcaactcttt cgagaaaata acattagtat tccttttcct cagcgcgatg
     6901 tgcatttatt tacacggccc acacaagaac tcccaaaaac tgattgatca tgcctaaaat
     6961 tttgattgta gaagatgaag cggctatcag aagggtgctc tcaaagattc ttaaggagga
     7021 agatgccgcc tacgatgtct ttgaggcaga agatgggcgt cggggcttag agatgattca
     7081 gtcacaagaa ttcgacttgg ttttttgcga tatcaaaatg ccggtaatgg acgggatgga
     7141 gttacttgcg gcgatgcaag agcaatattc agagataccg gtggtcatga tttctggtca
     7201 cggggatatc gaggttgccg tagaagccat gcgcatcggg gcgtttgatt atatctcaaa
     7261 gccacccgat ttaaaccgtt tactcaatac agtgcgcctg gctttggatc gcaagcagct
     7321 cgtggtgacc aacaatcgtt tgtccaaaaa ggtagcccga aaatacacca tgatcggctc
     7381 atcacaggcc ttagatcgca tcaggtcaat gattgaaaaa gtcgcgccga ccgatgcacg
     7441 ggttctcgtc acggggccta atggttcggg taaagaattg gtcgcccacg ctttgcatgc
     7501 ccagagcgcc agggccaaag gcccaatgat tgaagtcaat tgcgcggcaa ttcccagcga
     7561 gctcatagaa agtgaattgt ttggtcatgt taaaggggcg tttacctcgg cggtcaaaga
     7621 taaggccggt cgatttgaaa gcgctaacgg gggcaccctg tttttggatg aaatcggcga
     7681 catgagtctt tctgctcaag cgaaagtttt gcgggcccta caagaacaaa aaattcaaag
     7741 agtagggagt gataaagaca tcaaggttga tgtacgtgtt ttggcggcaa ccaataagga
     7801 tttagttcat gaaatcaagg agagtcgttt ccgcgaggac ttatatcacc gcttggcggt
     7861 tattttaatt gacgtacccg ggctcaatga gcgcaacgga gatatcccag aactcgtcgg
     7921 tcatttttgc acccagattg ccacagaaca aggcgccccg ataaaaattt ttgacgataa
     7981 ggccttggcg ctactcgaat cttttgattg gacgggcaat atacgtgagt tgcgcaatgt
     8041 cgtagagcgc ttgattattt taggcgggcc aaagattacc gaagaagatg tgcgcgcgtt
     8101 tgcacaaaag aaataagttt ttaaaatttt tagatcgatg aaaaattcaa tttctgttgt
     8161 ccttttggct gtattttctc tggccaccac gcgccttcat gcccaagagt ccacggctga
     8221 cgcgcaaatg ctgcgaaaaa tttatgatat ggccctgact gagggtaagg cctacgattg
     8281 gctcgatcat ttatcaaatg aaataggcgg gcgtttatcc ggctcattag aagcagaaaa
     8341 agcggtacag tacaccaaag aagtgatgca agaaatcggc ctagattctg tgtggttgca
     8401 accggtaatg gtgccgaaat ggacccgcgg ggtgcccgaa tacagctaca tcgaaacggc
     8461 tcctgggata agttctgtcg ttaatgtctg cgctttagga ggctctgtat ctactccgga
     8521 tggtggatta aaggctgagg ttattgaagt taagggcatt gaagagcttg aggcattagg
     8581 gcgagacgct attgagggaa aaattgtgtt ttacaatcgg ccgatgcaag ccaatttgat
     8641 tcacactttt gaggcttatg gtggttgcgt cgaccaacgc tattccgggg ccaaagaagc
     8701 cgccaaattt ggtgctgttg gggtagtggt tcgttccatg aacctaagac aagacgatct
     8761 gccgcatacc ggcgccatga gctatgatga cttgccggtg agcaagcgca ttccggcttg
     8821 tgctattgct accaatgacg ctaattattt gagtacggct ataaaactta agccagactt
     8881 gttgttttat tttaatcaaa cttgtcgtgt tttcccagat gtccaatcct ataatgtgat
     8941 tggcgagatt cgcggttctg agttccctaa caattatatg gtcgtgggcg gtcatctaga
     9001 ttcttgggat ttaggagacg gttcccacga tgacggcgca ggttgtgttc aatccattga
     9061 ggtattgcgc ttattgaaaa aaatgaacta caaaccgcga cacagtatcc gcgtggtcat
     9121 gtttatgaat gaagaaaatg gtttacgcgg cggacgaaaa tatgccgaag aagcccaaat
     9181 aaaaaaagag aatcacgttt ttgccttaga aagtgattca ggtggattta ccccccgcgg
     9241 gttttccatt gacgcagatt cagacaatat ggatcaaatt caatcttggg ttcccttatt
     9301 taagccttat ttgattcatt attttgaacc agggggcagt ggtgcggata ttggcccact
     9361 taaaaaagac gggatggtct tagccgggtt acgccccgac tcacagcggt attttgatca
     9421 tcaccacgct tcgaatgata cctttgacgc ggtgaataag cgcgaattag aattgggtgc
     9481 ggccaccatg acgtcactga tttatcttat ggataaatac ggaaccaaga cagaatacac
     9541 caatattcca aaatagggtg agtaccatgc cacttgagcg ctatacacgc gagtttgggt
     9601 ataacctgcg cctggcgggc ccggtgattt tgggaatgct cgggcatacc ctcgttgctt
     9661 ttgtagacaa tattatggtg gggcagttag gtacagcaga actcgctgcg gtttcactgg
     9721 gcaacagttt tatgtttgtg gccatgtcct tgggtattgg atttagtacc gcgattaccc
     9781 cgcttgtggc agaggccgag ggagaaggta atttctcccg cggaaagatc gccttcaagc
     9841 acggattggt cctttgtact ttgctggggc tgctgctgtt tacttcagta ttttttgcca
     9901 aaccactcat gtacctcatg aagcagcctg aagaagtcgt tattctcgcg atgccttacc
     9961 tgacttatgt tgcgatctcg ttagtgccct taattatttt tcaggcgttt aaacagtgca
    10021 gtgatggact ctcactaacg cgttacccca tgtacgcgac cttggtggcc aatgtggtta
    10081 atgtggtatt gaattactgt ttcatctttg gtcattttgg tgcaccagcc ctgggtgtag
    10141 tgggggcagc aatcggaact ttagcttctc gagtgattat gatttgggtg ctctggtggc
    10201 ttttagccca tcatcaaaag gccaagtggt atgtccgtca tttgcgtttt aaattattga
    10261 gttcaagggt gttcaaaaag attctgcacc tgggctttcc ctcggccatg caaatgtttt
    10321 ttgaagtagt gttttttact gctgccatct ggctttctgg cttacttggt aaaaatccac
    10381 aggcggccaa tcaaattgcc ttgaatttat catccatgac ctttatggtg gctatgggtt
    10441 ttagcgttgt agcgatgatt cgggtaggta accaaaaagg taaaggagaa ttttctgaac
    10501 ttcggagaat agccttttca atttttctct tatccttgat ttttgccctt ctctttgccg
    10561 tggtattttt caccttcaac cattggttgc ctaccatgta tttagacatg aataatctcg
    10621 atcaatgggc tgataataat gaggtactgg aaatagccaa atcacttatc attattgccg
    10681 ctttatatca aattagtgat gccattcaag tcgtggcgct cggcgcatta cgcggcttac
    10741 aagatgtatt ttatcccaca atttatacgt ttatttctta ctggattatc ggattcccta
    10801 cctccattta tttgggcatg tatacaccat taggaattac tggaatttgg atcggactgt
    10861 tatctggatt ggttgctgca gccgcaactc ttttatggcg tttcaatcga ctctccaagc
    10921 gcctcattgg tgaaggaccg gcctcactat ccatagaaaa ttcttgatta cctttacaac
    10981 caaatacgat accacatgga actgccaaaa ttcttattag gagacaatac cgatacccca
    11041 gacgcgatct acgtgattca taccgaattc cctaggttta ttatcaatct tgtcgatgac
    11101 caaattgagt ggttcgaaga attcgacagt gaagatttaa aggaactcga agaagaaatg
    11161 gcgcgttgta tcgatcaagc ttctgaattt tacgatcgag aaatggccca ttacgaaaac
    11221 tcagatgatt gagattttag gggcatatga tcaagcgctt tttgtttgga tcaatagtgc
    11281 cgggacccca ttttgggatc cgttttggct tgttgtgaca aacaaatggt cctctattcc
    11341 attgtatgtt gtattgcttt ttctcttgcg acaatattac agttggcgtc aagtctttca
    11401 aaccttattt gtactggggc tcatgattgt ggttaccgat cagctggcca atttatttaa
    11461 atatgtcttg gtgcagcgac cgaggccttg tcgtgaggag ggcttacaag atcagctcag
    11521 aatggtggcc gcttattgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11581 nnncggccca tgcagccagt tcagctgctt tagccagctt tttaattcgc ttgataaaat
    11641 atcatagagg gcggcctagt gtatggtcac agggttttat ctccaaagtt atcgcccttt
    11701 ttacaccgag attttggatc gttttattgc tgatttgggc ggcggcctta ggctacagcc
    11761 gaatatatct gggggtacat tacccttttg atgtccttac cggttggttt gttggtctag
    11821 cggtcggtgg gtttgttttt tatccactcc agctctggct gatccgacga ttttcgtagt
    11881 tctatttttg cgatttcttg tttacggtac gcacgataaa aaagtcacgc catagtctgg
    11941 gacgatgggt tctttgaccc gggccttgtg gattcatatc gaagcgatca acgagttcta
    12001 gctgatcttc tttgaactgt cttttgaact gaaccaaatt gtcctgagaa acaaggaccc
    12061 caaagaccga atctttgggc tgaataaatt tgtcgtttat tatcagaccg ggaatcggtt
    12121 taccaaaatc ccaaaccatt tccggagtaa agccgccaaa ttcataaact ttgatctggt
    12181 ttttccgctc ccactcagcc aaaagacgca ggnngggttt aaactctgga ttttgactta
    12241 ttgccggggc cagaggcagg ccaaaaagta caataacgac aatcatcgca atactccccc
    12301 taaaggacca ttgaatttgc tgtttgatca ggccgtagag aattaatgtg gcgctcaggg
    12361 cgagtccgat ggccgttaaa acaaaccaga tcatataagg acttagcgat gcccctaaaa
    12421 taagccaagc acctgcggga acagccagcc cgacgagccc taagacccca aagtgaatct
    12481 gtaaggggat gcggagccaa ggactcatcg ttttaaattg ttttaaggcg tataaaacaa
    12541 gaaatccgat attaaacgcc agcggaatta atacaggcaa gaggtaacgc ggcttttttt
    12601 cgggaactaa cgaaagcagg actaccgcgc acacagtcca ccaaaaactt agggcataag
    12661 ctttgccatg aaacaccctt tttttgagat atgggtaggc cagactcaat accgcgggaa
    12721 tggtccataa accactttga atgaaaaaac tccaataata gtaaaagggc tttacgttat
    12781 agttggtcca atttgtcgtt tctttttcgg ttattgcttt aagattttcc ggatcgacga
    12841 tattgatgta ggcatgccac caaagggccg taacaagtcc gaccagcaag accagaaata
    12901 gaggaccaac attcgccttt agattgcgta gtcctgagac aatagctttg gccagaacca
    12961 agggcaaaaa cagggcatat agagaaacgg ggcctttact cataaaagag gcgccaaaaa
    13021 atattcccgc aaggagcgca taagtccatc tggattttgg gtgtgcaaaa agctgataca
    13081 aacaaaaaat accccccatc ataaagctat gggtgaaaat atcccactga ccgttacgcc
    13141 ccgcaaacac catgtaaaat gaagtgctga gaatcagtcc agaccaaagg gcataagctt
    13201 tatttcgtgt aaattttaag gctaaggcat agctaatcat cacggtaaat agccccataa
    13261 ttgcggcagg taagcgcagt gcggcaatac ttttgagtcc aaaaattagg gctgaaaacg
    13321 cggtaagcca ggtgggtaat gggggttttt ggtagcgcgg ctctccattt atggtggtta
    13381 ataaccagtt gccctcaaca atcatttcgc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13441 nnnnnnnnnn nnnnnnnnnn nntgccctca acaatcattt cgcgggcggt aataaaattt
    13501 cgggcctcca taatgttgat gagtaaaaca tctaaatggg ctacaaagac aataaaggcc
    13561 accccaaaaa gtaaatatgc tgcgtactta gtcccctgat tcatttttgc caataaataa
    13621 gttgcgtaaa taaataatca aaccactgcc gtgtccgacc agcagcacgg ggtcttttcg
    13681 ataaagggca taagcaataa tcatcatggc gcccaaagca ctgagtcgcc aaaatccttt
    13741 ggggagatgg gacgttttgc gctgctctga gtaccaccat tgataaataa atctaaacgt
    13801 aaagatcagc tgagcggaca cgccaagcca aaaaagccaa tcgggaatgg cactgttgtt
    13861 taacagtaat tcgcggtcgt aagcgccatt attgtaccca taccagacca ccattaatgg
    13921 gaacaggagt agaaaataac gcactgctat cggggctttt cgccattgac cttgaaagtg
    13981 aagattgcgt atgtaaatgt aataggttaa agactggccc agcattatgg caaaatcttg
    14041 gcgtaagtaa ccatagacaa acaataaaaa cgaagccaat aaactcagtt gccaaaaaag
    14101 gctcggggtg acgacacgct tctggcgttc agataaaaac cattgaacaa aaaggcgtgc
    14161 tgaaaaaagc agttgggcca aaaatccaat actgtaaatc agcccttgac tcatccttgc
    14221 tctttaacct gatagttgat gtactttttc ttcatccaga ggtacgcaaa acaatccatc
    14281 aaaggcccca aaagtcgatt ccataccccg aattttgcct ggccagcgat tcttggataa
    14341 tgccttactg ggatttgaat gattttttcg ttttgcaaca gaatcatcgc tggaagaaag
    14401 cggtgtagtc ctttaaacat ggggattttt ttagcgcagt cggttcggat gattttaagg
    14461 ggacaccccg tatcatccat accgtcatgg gtaaatgccc gacgaatccc attggcgatt
    14521 ttagaggaca tattcttgac aaaactgtct ttgcggttgg cccgaactcc agtgactaga
    14581 gcgtaggttt ctgcgtgggc caaaagggcg ttaaaatctt ctggatcggt ttgaagatca
    14641 ctatcgatat agcccaccca aggggtagtg gccgcatcaa aaccggcttt aatggctgca
    14701 ctcaatccgc aattttttac aaagctcaga tagctaaagg ctggattccg tttacaggtc
    14761 tctttcatca tgaggaggct gtcatcggta gaaccgtcat tgaccaaaag aacacatgcg
    14821 ggttttgccg caatttctag atattttaat aattcctttt ctaggcgttg taggttgtcc
    14881 tgctcattgt agacaggaac gattatggtc agcgcgtagt tcatttgtgt caggcgtttg
    14941 gtgcaaaagt aattctttat caggaataaa aagggaaacc taaaaaagtg gtttctttgc
    15001 aagagaattt attacccatg aaaatactgg tcacaggggc tgctggattt atcggctcac
    15061 atactgcaga acgacttcaa gctatggggc atgaggtgat agggtgggac aacttctcga
    15121 attattatga tgttgcctta aaggagcata cggcaaaaac tcttgaatca caggggattg
    15181 tcatgcatcg cgtagatctt gtgaacgatg atcttcgggc catttggccc gagggcgtgg
    15241 cttatgtttt tcactttgcc gcccaacccg gaatttcgca atccagtaca tttgaggcct
    15301 atttagacaa taattttttg gggactcaac gcctgctctc agttttggaa ctactggatc
    15361 aaccgccgta tttggtcaac attgcgacct cttctgttta tggtctggtg gcgaccaaag
    15421 atgagtcttc agcgccagag cctgcctctt ggtatggggt cacaaaatta gccgccgaac
    15481 aacttgtttt ggcttatgta cgtcgcgggt ttataaaagg aacttcactg cgtctttatt
    15541 cagtttatgg ccctcgtgag cgccccgata agttgtacac ccgactcatt gattgtggac
    15601 taaatcaaaa agaatttagc ctataccagg gcagcgagca acacagaaga agttttactt
    15661 atgtcgggga tatcgtgacc ggtattgtgg cggttatgga tacggctcaa gcctgcagtg
    15721 gtgag
//
LOCUS       DPUP01000170            3124 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3371,
            whole genome shotgun sequence.
ACCESSION   DPUP01000170 DPUP01000000
VERSION     DPUP01000170.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3124)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..820)
                     /locus_tag="DHV98_06360"
     CDS             complement(<1..820)
                     /locus_tag="DHV98_06360"
                     /inference="COORDINATES: protein motif:HMM:PF02894.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HCK05974.1"
                     /translation="MNTIKFAVAGLGRIGKIHLDNLLQMEGVEVVAAMDPSEECRLYA
                     KNNNIPFITSSYKDLISMGDFSVILICSPTNTHADYVEMGALAGKDVFCEKPLDLSLE
                     RVLEVLKVVHESGVQLMLGFNRRFDKEFKKVHELVKEGAVGEPHLVKITSRDPGAPPV
                     SYIKQSGGLFLDMTIHDFDMARFVVGKEIDEVYAKGTVLTNPAIGEAGDIDTAVVTLT
                     YMDGTMAVIDNSREAAYGYDQRIEVFGSKGMVQANNNFNDSHRLYTSKGIEGALP"
     gene            complement(817..1860)
                     /locus_tag="DHV98_06365"
                     /pseudo
     CDS             complement(817..1860)
                     /locus_tag="DHV98_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007938464.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
     assembly_gap    1067..1108
                     /estimated_length=42
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1895..2800)
                     /locus_tag="DHV98_06370"
     CDS             complement(1895..2800)
                     /locus_tag="DHV98_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013406872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HCK05975.1"
                     /translation="MIKIANAPCSWGALEFDLEEKSEEIGFEQVLDEIKQTGYIGTEL
                     GDWGFMPTDPALLRTAIDSRDLELLGAFVPVALADKRTHDMGIQSALRVAELMYKAGY
                     PNAFIVLADNNGSIPERTKNAGRITPEMGLTKNQWETYTKGAEKVAKAVKEAYGLRTV
                     FHHHCAGYVETPKEIDTLMALTDPDLVGLCLDMGHYAFGGGDPVSALKKHSNRIWHVH
                     FKDFDPEAARLSREANGDYFDAIKRGVFCELGKGSVDFKIIVDLLQDKNYNDWIVVEQ
                     DILPGMGNPKICARTNREYLNSIGL"
     gene            complement(2813..>3124)
                     /locus_tag="DHV98_06375"
     CDS             complement(2813..>3124)
                     /locus_tag="DHV98_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016860514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonate-semialdehyde dehydrogenase (CoA
                     acylating)"
                     /protein_id="HCK05976.1"
                     /translation="VMSLISLKNIDEALSFVNSGSYGNMACIFTGSGANARKFRNEAD
                     AGNIGINIGVAAPMAQFPFSGWKDSFFGDLHGQGKHAIEFFTQTKVIIERWPNIWSRK
                     F"
BASE COUNT          825 a          727 c          521 g         1009 t
ORIGIN      
        1 ggggtagagc cccctcaatt cctttacttg tgtacaggcg atgtgaatcg ttaaaattgt
       61 tgtttgcctg gaccatgcct tttgaaccga atacttcaat gcgctgatca taaccatagg
      121 ccgcctccct actattgtct attactgcca tggtaccatc catataggtc aatgttacaa
      181 cggcggtatc aatatcacct gcttcaccaa tagcagggtt cgttaaaacg gtacctttgg
      241 catagacttc gtcaatctcc ttgcctacta caaaacgtgc catatcaaaa tcatgaatcg
      301 tcatatccaa aaataatcct cctgattgtt taatatagct aactggtgga gctccaggat
      361 ctcggcttgt tattttcact aaatgaggtt ctcctacggc accttctttc acaagctcgt
      421 gtactttctt aaattccttg tcgaatctac ggttgaaacc caacattagt tgtacaccgc
      481 tctcatgtac aacttttaaa acctccaata ccctttccaa ggataggtct aagggctttt
      541 cacaaaaaac atccttcccc gctaaagcgc ccatctcgac ataatctgca tgagtatttg
      601 tcggggaaca tatgagtatg acactaaagt cgcccataga tatcaagtcc ttataggacg
      661 atgtaataaa cggaatatta ttatttttgg catatagccg acattcctcg gatgggtcca
      721 tcgctgccac tacttctact ccctccattt gaagtaagtt atccaaatgt atctttccta
      781 ttctgcccag gccggcaact gcgaacttta tggtattcat atttttataa gtttattttc
      841 tttaaatgat tttgtcgcca aatatgctat attggttgat tttgttccat cttccacttt
      901 aatttctggt tttttatttt cagtaatgca atccacaaat tcctgcattt cattaacaaa
      961 tgctacttca aatctttctt gaaaggattg ggaacattct tgccttacac cctgcgaatc
     1021 taatatctcg accatatttt ttcttggaac agatccaatt ctaagcnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnncc tatgatttca gtttccacat tataaccatg
     1141 gggtgccgtt ctacctgcca agaaaaaggc catactctca ttgtcaaact gcaataatgc
     1201 cgatacgtta tctccatcgc catacgcggc aaactcttca tgtgcataac atccgccaat
     1261 ggcaaaaatg ctttttggct ctgcttttag catccatctt gctaaatcga tatcatgaat
     1321 ggccatatcc aaaaattgtc cagcactgtg ttcgacatat tttaaggcac catctatcgc
     1381 cgattcagga tctacactat agcttctaaa aagaatgggt tttcctatta caccttcatc
     1441 tattttttgc tttgcataca tatatgaagg gtcgtacctt ctcataaacc ctaacataaa
     1501 tacctgattt gcattttcag ctacagcttt ttctacggct aagcactctt ggagggtagt
     1561 tcctaagggt ttttcgcaaa atacgtgcaa tcctttttga agggcatata tggcttgttc
     1621 acaatgatgg gtcgatgggg aaacaatcac aatggcgttc aagtcagagg ccttgatcat
     1681 ttctttaaaa tcagtaaaac aatggtcaac gttcaattct tttttcgctc tggataattc
     1741 ttctttgtta aggctacagg ctgcggacaa ttctgcattt ttaattatgc ttccaatatt
     1801 tgtggcatga ataaagccca atctgcccaa tccaacaata ccaatacgaa ctttattcat
     1861 atttacttaa attaaagcgt ttattttaat taggttataa tccaattgaa ttaagatact
     1921 cacgatttgt ccttgcacat attttcgggt ttcccatacc tggaagtata tcttgttcca
     1981 ctacaatcca gtcgttgtag tttttatcct gcaataaatc aactattatt ttgaaatcca
     2041 cgcttccttt gccaagctca cagaaaaccc ctctttttat ggcatcaaaa taatcgccat
     2101 tggcttctct tgatagccgc gcagcttctg ggtcaaagtc cttaaaatgg acatgccaaa
     2161 ttctgttgga atgttttttt aaggcactta caggatcacc tccgccaaag gcatagtgcc
     2221 ccatgtccaa acataatcca actaggtcgg gatcggtaag cgccattagg gtatctattt
     2281 ctttgggtgt ttctacatat ccggcgcaat gatgatggaa aacagttctt aggccgtaag
     2341 cttctttcac ggctttggct actttttcag caccttttgt ataggtttcc cactggtttt
     2401 tggtcaatcc catttctgga gtgattctgc cggcattttt tgtccgctct ggaatactcc
     2461 cgttgttatc agccaaaact ataaaagcat ttggatatcc tgccttatac ataagttctg
     2521 ccacccgcag ggcagactgg attcccatgt cgtgagtacg cttatctgca agggctacgg
     2581 gtacaaaagc acctaagagt tctaggtctc tgctatctat cgcagtcctt aatagggccg
     2641 gatctgtcgg cataaacccc caatctccta gttccgtacc tatgtagccc gtttgtttaa
     2701 tttcgtccaa gacttgttca aaaccaattt cttctgattt ttcttccaaa tcaaattcca
     2761 gtgcacccca cgagcaaggt gcgtttgcga tttttatcat ccaaggttta ttttaaaatt
     2821 tacgcgacca gatattcggc catctttcta tgattacttt ggtttgtgta aaaaactcaa
     2881 tggcatgctt gccctgccca tgcaggtctc caaagaaact atctttccaa ccactaaatg
     2941 gaaactgcgc cataggggca gcaacaccaa tattaattcc gatatttccg gcatccgcct
     3001 catttctgaa ttttcttgca tttgccccac tacctgtgaa aatacaggcc atatttccat
     3061 agctgccact attcacaaag gaaagtgctt catctatatt tttgagggat attaaactca
     3121 tgac
//
LOCUS       DPUP01000171           13356 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3372,
            whole genome shotgun sequence.
ACCESSION   DPUP01000171 DPUP01000000
VERSION     DPUP01000171.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 13356)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 13356)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13356
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..513)
                     /locus_tag="DHV98_06380"
     CDS             complement(<1..513)
                     /locus_tag="DHV98_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010522919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05977.1"
                     /translation="MVYRFRVILNAKEDIFRDLELRHDQSLEDFHNSITQAFGFGGQE
                     MASFYLSNDEWTQEEEFPLFDMSDGMDEKRTMGETALHEILDEHQTKMIYVYDFLNYW
                     TFMVELAEIAQETDGVDYPNLIFAHGQLPEEPPTTEFEGVDASDADFDFGDDSDDEFG
                     DMDHLDDYDLD"
     gene            complement(634..1713)
                     /locus_tag="DHV98_06385"
     CDS             complement(634..1713)
                     /locus_tag="DHV98_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014031682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HCK05978.1"
                     /translation="MKKSSVRENRRAQNSAHAHKSVIYWLLSGCFLIFIMVIVGGITR
                     LTHSGLSIANYQLIAGTIPPLNAEEWQAAFDLYKQYPEYQKINHKMNLEEFKDIFFWE
                     WIHRVIGRVIGLVFILPFIYFLIKKRLSAKTIRLCLGLMSLGALQGFLGWFMVKSGLV
                     DRPDVSHYRLAMHLTTAFLTFAATFWVALGLIYPGGQRNKKLWSKWGGWVKAAYGLLV
                     IQIIWGAFVAGLDAGWLHNHWPLMNDGLWMHESVTQELNPTWKNFVEGKSGVQFVHRT
                     LAYIVVLLIGRVAYLGLKYGTTLQHRRLAYGILAGVGIQFLLGVLTLIWQVPLFLGLA
                     HQVMAFVLLALMTLTWHRFKYGQAN"
     gene            complement(1700..2248)
                     /locus_tag="DHV98_06390"
     CDS             complement(1700..2248)
                     /locus_tag="DHV98_06390"
                     /inference="COORDINATES: protein motif:HMM:PF13302.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCK05979.1"
                     /translation="MNKPQPPIIETPRLILRPFTMEDAAAVVRFGSNNRTQELTGDIG
                     IYTIEKAQEIIQEVWLKEYEQYGYARMAVVVKSSNELIGFSGLKHLPELSAPDLGYRF
                     LPDYWGQGVATEAAKAILDWGFKNFDFEKIVAFSFAFNFGSMGVLRKLGFNYLKHNHY
                     PGEQNGITLNWYELQRMNYEEK"
     gene            complement(2245..>3367)
                     /locus_tag="DHV98_06395"
     CDS             complement(2245..>3367)
                     /locus_tag="DHV98_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA nucleotidyltransferase"
                     /protein_id="HCK05980.1"
                     /translation="YAHESRNPSVSPGNLVDDQNRRDFTINALALSCNREDFGRLLDP
                     FDGLSHLDQKMLITPLDPDTTFSDDPLRMLRAVRFASQLNFVIEAKTLVAIKRNAARL
                     SIISKERIVDEVHKILASSIPSIGLGLMHQTGLMAQVFPELMALQGIEEKEGQTHKDN
                     FWHTLEVVDNMAQYSNDLWLRWAALLHDIGKAPTKRFDQKAGWTFHGHEFVGSKMVYK
                     LFKRLKMPLNEKMKFVQKMVAMSSRPIVIAQEVTDSAVRRLLFDAGEDLESLMTLCEA
                     DITTKNPKRFRRYHENFKRVREKVVEVEQRDHVRNFQPPISGEEIMETFGLSPSREIG
                     LIKDAIKEAILEGEIPNDYNQAKSFMLEKAAQLGLKPLV"
     assembly_gap    3368..3575
                     /estimated_length=208
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3576..3908)
                     /locus_tag="DHV98_06400"
     CDS             complement(<3576..3908)
                     /locus_tag="DHV98_06400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA nucleotidyltransferase"
                     /protein_id="HCK05981.1"
                     /translation="MPVLNRAAKALKHPVFQTVARVADELGLDTYVIGGYVRDALLER
                     GNAKDIDFVAVGSGIELAKAVAQNLPNRPKVQIFKNYGTAMLQTQGLTLEFVGARKES
                     YAHERDRKS"
     gene            complement(3908..4486)
                     /locus_tag="DHV98_06405"
     CDS             complement(3908..4486)
                     /locus_tag="DHV98_06405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCK05982.1"
                     /translation="MNSEEHFKQEIIIAMAVLKKGGLILYPTDTIWGIGCDATNPDAI
                     DRVYALKKRSDAKALICMVSDFRMLNEYVSDIPEVAYDILKYAIKPTTIIYDKPIRVA
                     QNLLAEDESLGVRVTRHDFSKNLIHKFKRPLVSTSANISGQPSPKSFQEIDPAILEGV
                     DYVVNLERNKKNGPPSAIIKLKNDGTVQIIRD"
     gene            4727..5782
                     /locus_tag="DHV98_06410"
     CDS             4727..5782
                     /locus_tag="DHV98_06410"
                     /inference="COORDINATES: protein motif:HMM:PF13439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05983.1"
                     /translation="MGVVKNNKIYVLHKRGAVSHYMALEFLLKSHGLTLEFREFAVLT
                     KIFKSIKSLDFGLLFKQVINIGFMFNLFFSSKKKIVIGIEPFDKRIIFIRNLVRRHNV
                     YYHTSWACWDGTFHPKHSKNSKIYENWKSFLTSDCKHIFTVTNESRKEISKNFKISND
                     KISVVYHSVKFPNVPLNITKKPLSFIYFGRLVKQKGVIELINFFKNNPAASFTLIGNG
                     PLEKEIVKLTSGCSNINYLPHISEKNKLLKIVAEHQYFVMNSKKTNSWEELFGIALIE
                     SMQMGLIAIATDHVGPSEILDDKCGYLISEGDICHCLKKIINKNNFSQSMSKKSMLRA
                     SDFELQKISKNWIEILT"
     gene            5783..6709
                     /locus_tag="DHV98_06415"
     CDS             5783..6709
                     /locus_tag="DHV98_06415"
                     /inference="COORDINATES: protein motif:HMM:PF00535.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCK05984.1"
                     /translation="MLEVSCIIINFNTSLLTVNAVKTLIETNLTTLNFELIVVDNASS
                     DSDYISLKNEINSLADKRIKLIRSKTNLGFGGGNMLGIKHSSDSTYFAFINSDTIHIE
                     KNGLSMMKTFMDDNIDVGVCGPQMLDEKLKFCVSFDHFSSLPREIFKRTLLETFFPKR
                     YKKRKKKYFHPLDVDYVQGAFLFVRSRDFIEIGAFDERIFLYYEESDVSMRFLKFKDL
                     RTVFLPNIRYIHLKSRSMPKNMALKIEQKLSLIYHTKKHYGALQTYILKLYLVTRYSF
                     TSIVKPKYFKLLIILLKGGGMEYSIRNKQGSL"
     gene            6867..7754
                     /locus_tag="DHV98_06420"
                     /pseudo
     CDS             6867..7754
                     /locus_tag="DHV98_06420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    7708..7731
                     /estimated_length=24
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7751..8059
                     /locus_tag="DHV98_06425"
     CDS             7751..8059
                     /locus_tag="DHV98_06425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05985.1"
                     /translation="MSVSPNAGQVGPPNYGYGGNTESQQAKALLQNINDVTTSTLPIA
                     GVCIHEYLDAWWKFGLEDSYTQDPDDVEEWFGLVKLNNAGGWYTTEFRSAYEAIKNIW
                     "
     gene            complement(8141..8386)
                     /locus_tag="DHV98_06430"
     CDS             complement(8141..8386)
                     /locus_tag="DHV98_06430"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05986.1"
                     /translation="MPEYLKKLDQYSTLQAQMSFEVGKKAGLQQLIWRPWYRFWHQYI
                     IRLGILDGLPGYVLATINAHSVFKRYVKLYLLQRGGR"
     assembly_gap    8409..8544
                     /estimated_length=136
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8545..>8892)
                     /locus_tag="DHV98_06435"
     CDS             complement(<8545..>8892)
                     /locus_tag="DHV98_06435"
                     /inference="COORDINATES: protein motif:HMM:PF00535.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05987.1"
                     /translation="FKNVSVFTRPFDNFSAQKNFGIDQVVHPWVLFFDPDEEVVPALK
                     QEILQAVARGAHDGYYVRRQLYFMGKKIKYSGFQTDWVIRLGRKSACRYNGNFVHETM
                     DVNGRTGKLKTRLP"
     assembly_gap    8893..9053
                     /estimated_length=161
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9054..9195)
                     /locus_tag="DHV98_06440"
     CDS             complement(<9054..9195)
                     /locus_tag="DHV98_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011133783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HCK05988.1"
                     /translation="MSAVVITKNEGQIIEQFLTQLSFVDQIVLVDSGSEDDTVKQAQQ
                     FKN"
     gene            9297..10127
                     /locus_tag="DHV98_06445"
     CDS             9297..10127
                     /locus_tag="DHV98_06445"
                     /inference="COORDINATES: protein motif:HMM:PF06293.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo domain containing protein"
                     /protein_id="HCK05989.1"
                     /translation="MPTKISLILHPIHKRVYLTLDHIVVAEDFQDQKAVLIQAALNFD
                     QTQAPLIGTGDRNVIKRIDLGGFSMAVKSFKRPNWINRLVYRHWRKSKAHRSYIYAHK
                     LKALGIGTPQPVAFMESYGGAGIQRSFYFSLNVDADYTFRDLIHQPDLPNRDKILESF
                     TAFTFELHQKGVLFQDHSPGNTLIKMQDGTPSFYLVDLNRMTFKRLTKAERIQNFERL
                     TPLKEMVDKMGETYARLAHWPVDDLKEQMWRVTEDFQERFHRKRRLKKKLLFWRKKTD
                     "
     gene            10139..10969
                     /locus_tag="DHV98_06450"
     CDS             10139..10969
                     /locus_tag="DHV98_06450"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05990.1"
                     /translation="MKLKEFPISIFHAARLNLTAPERLLGGSQQVPVIISMTTIPSRL
                     RKLALVLISLLQQTVRPEKIVVWMHQEMQSQIPKAVKSLLENPKTLDLIELRFTPLKC
                     SHKKLIHTIDAFPNHTIVTCDDDFMYHKEWLNTLYQDHLAFPNSVIAQQIRSIERFED
                     GQLKPYKQWRYQPDLNQDPNSFLAIGGKGVLYPKQALHPDYSNQELFMRFAPKAYDLW
                     FKAMELRQNTPVRRCSKIVPEPIPIMGTQSFSLKKENVDRDLNLQQWQSLSDHFNLPV
                     "
     gene            complement(11030..12121)
                     /locus_tag="DHV98_06455"
     CDS             complement(11030..12121)
                     /locus_tag="DHV98_06455"
                     /inference="COORDINATES: protein motif:HMM:PF01075.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCK05991.1"
                     /translation="MNPKPIKKILVIQQKMIGDVLISSLLCSHFKVLYPQAQVHYAIH
                     QGTQAVVQGHPDIDQFILSTPKKSWNQWRKLINQIKKEQYDLILDAYGKLESLMMILP
                     SGAPRVYGHKKWFSLLAYSRTSKPSSQVYTHAGNAIEDRLRLIYPESEIRVKAQEFRP
                     KIYLTPKEISWAKEIIDAHNLDRAKTLVMVSVLGSSIDKSLPAQTMAQILTTLAQQPN
                     THILLNYMPHQKQSVEAILALVPEKNRVCVHPEVYGQNLREFLALLSHMNYLVGNEGG
                     AVNMAKALNIPTFTLFSPWINKAAWNSFDDGQIHIGLHLKDFTPDLFQGFSNKEVRKN
                     HQQFYKAFTFELFAPLLNSFCLRHSSTGQ"
     gene            12175..12996
                     /locus_tag="DHV98_06460"
     CDS             12175..12996
                     /locus_tag="DHV98_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK05992.1"
                     /translation="MNTPQISVVISTYNALEWLKKVLWGYAQQTFKDFELVIADDGSR
                     AETGEYVAAFAQETGIALQHIWQEDDGFQKSRILNKALAACRADYIVMSDGDCIPRKD
                     FLAVHYGHREKGYFLSGGYFMLPMETSKAIDKEAIVSGVCFDKAWLLQKGMASTFKFH
                     KLTAGKTLAKILNTLTPTNASWNGHNASGWKTDLLAINGFDQRMQYGGQDRELGERLM
                     NYGIKSKQIRYSAVCIHLDHPRGYKNQESIDKNRAIRSATRKEKRVWTDFGLIKK"
     gene            complement(13006..>13356)
                     /locus_tag="DHV98_06465"
     CDS             complement(13006..>13356)
                     /locus_tag="DHV98_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018676314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HCK05993.1"
                     /translation="GVLEPLQAVPVIVEDDAFIGSRCIVVEGVHIEREAVLGANVVLT
                     ASTKIIDVTGPEPKEMRGRVPAGSVVIPGSYTKEFPAGNYQVPCALIIGTRKPSTDKK
                     TSLNDALRTYNVAV"
BASE COUNT         3717 a         2644 c         2709 g         3757 t
ORIGIN      
        1 atctaaatca tagtcgtcta aatgatccat gtcaccaaat tcgtcgtctg aatcatctcc
       61 aaaatcaaag tcagcatccg aggcatcaac cccttcgaac tcagttgttg gtggttcttc
      121 aggcagttgc ccatgcgcaa atatcaaatt tggatagtcc acaccgtccg tctcctgtgc
      181 aatttcagcc agttcgacca taaaagtcca atagttcaga aaatcgtaga cataaatcat
      241 cttggtttga tgttcatcca gtatttcgtg tagcgcagtc tcgcccattg ttcttttttc
      301 gtccatgccg tcgctcatgt cgaaaagtgg aaattcttct tcttgcgtcc actcgtcatt
      361 actgaggtag aaagacgcca tttcttgacc tccaaagcca aaggcctggg taatgctgtt
      421 gtgaaaatct tctagacttt ggtcgtgacg cagttctaag tcacggaaga tgtcctcttt
      481 ggcattcagg ataacacgaa aacgataaac cataatgagc aaattattga gttcaaaagt
      541 acgctttatt caagaaaaga agcggtccat agtataaata ccaaaagcca tttttgccgc
      601 gactcggtat taaagagaat acgcgcttgg ggtttagttt gcctgaccgt atttaaaacg
      661 atgccaggtc agggtcatca gagccaataa gacaaaagcc atgacttggt gtgcgagccc
      721 taaaaataag ggaacttgcc atatcaaagt cagtacgccc aatagaaatt gaataccgac
      781 tccagccaag ataccatagg ccagacgtct gtgctgcaat gtcgtgccat attttaaccc
      841 gagataagcc acacgaccaa tcaagagcac tacgatatag gctaaagttc tatggacaaa
      901 ttgaacccca cttttacctt caacaaaatt tttccaagtt ggattgagct cttgagtgac
      961 cgattcgtgc atccatagac cgtcgttcat taacggccag tgattgtgta accaaccggc
     1021 atcaagtccg gccacaaagg cgccccaaat aatttgaata acaagaagac cataggctgc
     1081 ttttacccaa ccgccccatt ttgaccaaag ctttttgttg cgttgccctc cgggataaat
     1141 taagcccaat gccacccaaa aggtagcggc aaaggttaaa aaggccgtgg tgaggtgcat
     1201 cgccagtcta tagtgactta catcgggacg atccacgaga ccacttttta ccataaacca
     1261 acctaaaaat ccttgcaagg cccccaatga cataagcccg agacaaagac gaatagtctt
     1321 ggcactcaac cgttttttaa tgagaaaata aataaaaggt aagataaaca ccagaccaat
     1381 aactcggccg atcacgcggt gaatccactc ccagaaaaaa atatctttaa attcttcaag
     1441 attcattttg tgatttattt tctggtattc agggtattgt ttgtacaagt caaaggctgc
     1501 ttgccactct tccgcattta aaggaggaat ggttcctgca atcaattggt aattggctat
     1561 ggacagacca gagtgggtca aacgcgtaat tcccccgacg atgaccataa taaaaattaa
     1621 aaaacaacca ctgagcagcc agtaaataac cgatttgtgg gcatgggcac tattttgtgc
     1681 gcgcctattt tctctcacac tacttttctt cataattcat tctttgcagt tcataccaat
     1741 tcaatgtgat tccgttttgt tctccaggat aatggttgtg tttgaggtaa ttaaatccta
     1801 acttgcgcag gacccccatc gagccaaaat tgaaggcaaa actaaaggcc acgatttttt
     1861 caaaatcaaa atttttaaaa ccccaatcca gaattgcctt agccgcttct gtggcaacac
     1921 cttggcccca ataatcagga aggaaccgat aaccaagatc gggtgcgctg agctcaggca
     1981 agtgctttag gccagaaaaa ccgatgagtt cattgctgga tttaaccacc actgccatac
     2041 gggcatagcc gtattgttca tattccttga gccaaacctc ttgaataatt tcttgtgctt
     2101 tttctatagt gtatatcccg atgtctcccg tgagttcttg agttcggtta ttggaaccaa
     2161 aacgcactac agcagcggca tcctccatcg taaaaggacg aagaatgaga cgtggcgttt
     2221 caattatggg cggttgcggc ttattcatac cagtggtttt aaaccgagtt gggctgcttt
     2281 ttcgagcata aatgattttg cctgattgta atcgttagga atttctccct ctaatatggc
     2341 ttcctttatg gcatctttga tcaatccaat ttcacgagag gggctcagtc caaaggtctc
     2401 cataatttct tccccgctga tgggcggttg aaaattcctg acgtgatcac gctgctccac
     2461 ctcaaccact ttttcccgca ctcttttgaa attttcatga tatcgcctaa agcgttttgg
     2521 attctttgtg gtgatgtccg cctcgcaaag ggtcattaga gattccaaat cctccccggc
     2581 gtcaaagagt aaacgacgca ctgcgctgtc tgtgacctct tgagcgatta caatcgggcg
     2641 agaactcatg gccaccatct tttgaacaaa tttcattttt tcgttaagcg gcattttgag
     2701 tcgcttgaac aatttgtaga ccatttttga tccgacaaat tcatgcccgt gaaaggtcca
     2761 gcccgccttt tggtcaaaac gtttggttgg ggccttgcca atatcgtgca agagggcggc
     2821 ccatcgcagc cataaatcat tactgtattg agccatattg tccacgacct ctagggtgtg
     2881 ccaaaaatta tctttatggg tttgaccttc tttttcttcg attccttgca gggccataag
     2941 ctcgggaaac acttgtgcca tgagccccgt ttgatgcatt aggccgagcc ctattgaagg
     3001 gatggatgag gccaaaattt tatggacttc atccacgatg cgctcctttg aaataatgga
     3061 taatcgcgcc gcatttcgtt ttatggccac taaagttttg gcctcaatca caaagtttaa
     3121 ttgtgaggca aaacgaactg cgcgaagcat gcgcaatgga tcgtcgctaa acgtcgtatc
     3181 tggatcaagg ggcgtaatca acattttttg atctaaatgc gacagcccat caaaaggatc
     3241 gagcaagcgc ccaaaatctt ctcggttgca gctcagggct aaagcattga tggtaaaatc
     3301 acgtctgttt tggtcatcga ccaaatttcc aggggaaacc gagggattgc ggctttcgtg
     3361 ggcatagnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngctct tccgatctct ttcgtgggca
     3601 taggactctt tacgcgcacc gacaaactcc aaagtcaggc cttgggtttg gagcatggcc
     3661 gtaccataat ttttaaaaat ttgaaccttg ggtcggttgg gaagattttg ggcgaccgct
     3721 ttagcgagtt caatcccgga acctacagct acaaaatcaa tatccttggc attgcctcgt
     3781 tctaaaaggg catcacgcac ataaccccct atgacatagg tgtctaaacc caattcgtcg
     3841 gccacacggg ccacggtctg gaatacaggg tgttttaagg ctttggctgc acgattgaga
     3901 acaggcatca gtcacgaatt atctgaacag ttccgtcgtt ttttaactta ataatcgccg
     3961 agggtggtcc gttctttttg ttgcgctcca aatttacgac atagtccacg ccctccaaaa
     4021 ttgcggggtc gatttcttga aaggatttag ggcttggttg accactgata ttcgccgagg
     4081 ttgaaacgag aggtcgcttg aatttgtgaa ttaaattttt tgaaaaatca tggcgcgtaa
     4141 cccgaacccc cagggattca tcttcagcca aaaggttctg agccacacgg attggtttgt
     4201 cgtagataat cgtcgtgggt ttgatcgcgt acttcaagat atcgtaagcc acctcaggaa
     4261 tatcggacac atattcattg agcattctga agtcagagac catacaaatt agtgccttgg
     4321 catccgacct ttttttaagg gcgtagacac gatcgatggc atctgggttt gtcgcatcgc
     4381 aaccaatacc ccaaatcgta tctgtgggat aaagaatcaa accgcctttt tttaagacgg
     4441 ccattgctat tattatttct tgcttaaagt gttcttctga gttcattatt ttataattta
     4501 acgtttttta ggcctcggtc tatattttaa gatggattac gggtttttat tttaatttat
     4561 ggttttgtaa ttgaatcttg acaatttatt caaaactttt gttaacctga ttatgagcga
     4621 aatttataaa tattagattt ataacaactg gctctaaata agaactattt tcataaatcg
     4681 ttcgtgtaaa tattaaacaa actttggttt tagggccaga ttatttatgg gagtagtgaa
     4741 aaataataag atttatgtgt tacataagcg aggggcagtt tctcactaca tggccttgga
     4801 atttctttta aaaagtcatg gtttaacttt agagttcaga gagtttgcgg tattgaccaa
     4861 aattttcaaa tcaattaaaa gtctggattt tggactttta tttaaacagg taataaatat
     4921 tggcttcatg tttaatctgt ttttttcatc caaaaagaaa attgttattg gaatagagcc
     4981 ttttgataaa agaataattt ttatccgaaa tttggttcgt agacataatg tctattatca
     5041 tacatcatgg gcatgttggg atggaacatt tcatccaaaa cattcaaaaa actcaaagat
     5101 ttatgagaat tggaaatctt ttctaacttc agattgcaag catattttta ccgtaactaa
     5161 tgagtcgagg aaggaaatat cgaagaattt taaaatcagt aatgataaaa tcagcgtggt
     5221 ttatcacagt gtaaaattcc caaacgtacc gctaaatatt acaaaaaagc cactgagttt
     5281 tatttatttt gggagattag tgaaacaaaa aggagttatt gaattaatta atttttttaa
     5341 aaataatcct gccgcatcgt tcactttaat cggcaacggt cctctagaaa aggaaatagt
     5401 taaattgact tcgggttgta gtaacattaa ttatctccct catatctccg aaaaaaacaa
     5461 gttattgaaa atagttgctg agcatcaata ctttgttatg aattccaaga aaactaatag
     5521 ctgggaggaa ttatttggta ttgcacttat agaatcaatg caaatgggtt taatcgcaat
     5581 cgccactgat cacgttggcc cgagcgaaat attggatgat aaatgtggtt atttaatcag
     5641 tgaaggtgat atttgtcatt gtttaaaaaa aataatcaat aagaataatt ttagtcaatc
     5701 gatgtcgaaa aaatcaatgc ttcgcgcgag tgattttgaa ttacaaaaaa tctctaaaaa
     5761 ttggattgaa atattgacat aaatgctgga agtttcttgt atcataataa attttaacac
     5821 ctctttatta acagtaaatg cggtaaaaac gttaattgaa accaatctga caactctgaa
     5881 ttttgaatta attgttgtgg ataatgcatc ttcagattct gactatattt cgcttaagaa
     5941 tgaaataaat agtcttgctg ataaaagaat caaattaatt cgaagtaaaa cgaatttagg
     6001 ttttggcggt ggaaacatgt tgggcataaa acattcgtca gatagtactt attttgcgtt
     6061 cattaatagc gataccattc atatagagaa gaacggactt agtatgatga aaacatttat
     6121 ggatgacaac attgatgttg gagtttgcgg tcctcaaatg ctagacgaaa aattaaagtt
     6181 ttgcgtgtcg ttcgatcact tttcatcttt acccagggag atttttaaaa gaacactttt
     6241 agaaacattt tttccaaaac gttataagaa acgcaaaaaa aaatatttcc atcccttaga
     6301 tgttgattat gttcaaggcg cttttttgtt tgttagatcg cgtgatttta ttgaaatagg
     6361 agcattcgac gagagaattt ttttgtacta cgaagaatcg gatgtatcga tgagatttct
     6421 aaaattcaaa gatttaagaa ctgtctttct tccaaatatt cgttatatcc atctaaaaag
     6481 taggagtatg ccgaaaaaca tggctctaaa aattgaacaa aaattatctt taatttatca
     6541 taccaaaaaa cattatggtg ccctccaaac atatattctc aaattatatt tggttactcg
     6601 atattcgttt acttcaattg tgaagccaaa atatttcaaa ttattaatta tcctattgaa
     6661 aggaggaggt atggaatatt cgatcaggaa taaacaaggt tcgctctaaa tctcaattgg
     6721 aacagaaaaa tactttaaac aatacattat agcgcataat gtggtgcgca tcgagcgtgg
     6781 agtggatcaa taccacgtta ccccttaagt aaaatccagt aacgatgatt ggatacaaat
     6841 actattttct tcttctaatc ctaataatgg gtagctcgtg taataatgat gatacggagt
     6901 caattgagcc aaccgatgag atagaattca ctggatttag cgtaaacgat catcgtattt
     6961 taaaaaataa ccttcctttt caaataaagg gggtggtcta cgtgcctggt tatcctggtt
     7021 atttaccatg ggaaattgaa agtgcaacaa cgctgccgca ggaattaagc aacagtattg
     7081 aggcagactt atccaatatc aaggctatgg gggccaatac ggttcgattt tggggcgccc
     7141 ctaaatactg ttatgaagca ctaaagaatg ttggggattt gaattttatt caaacgattt
     7201 ggatcaaagg ggatgagccg gatttccaaa gtgctgaatt taaagaaagt accaagacct
     7261 atattcgtga ggtaatcgat agaatttact cagtttttaa tgataatcga ccgccactgg
     7321 tcgcgtatat cattggcaat gaactcagtg agtatagtat tttatccact aacgcggccc
     7381 atcctgaaat caccaatttt accggcaatt atattgttac ggattctggt attacggcca
     7441 ccgaggcttt tgttgccgaa atggcggatt ttgctcggac ctatgaatat gagacttatg
     7501 gaaatcagtc cttactgtct tatgccaatg aaattcgcac cgcagaggtc atcgacatcc
     7561 cgtttcttga ttttatttcc cataacgctt attcttatgc ggtaccttat tataggcctg
     7621 gaactgctgc gggaagcagt tcgggtactc tttttcaagg ttggatcgaa gaaataaagg
     7681 cgaaacatcc aaatataccc ttactcannn nnnnnnnnnn nnnnnnnnnn nactcatcag
     7741 tgaaaccgga ttgagtgttt ctccaaacgc aggccaagtc ggacctccga attacggtta
     7801 tggcggaaat acggaatcac agcaggctaa ggctttactt caaaatatta atgatgtgac
     7861 tacatcaacc ttgcctattg cgggggtgtg tattcatgag tatttggatg cttggtggaa
     7921 gtttggattg gaagattcgt atactcagga ccccgatgat gttgaagaat ggttcgggct
     7981 cgtcaaattg aataatgcag ggggttggta tacaaccgag tttcgcagtg cctatgaggc
     8041 gattaaaaac atctggtaat tctccctcaa aaaaataaaa tagaaatgcg aagctcgggt
     8101 cctctgggca acttattagc ctaatcttaa gccttagaga ttatcgaccg ccgcgctgca
     8161 aaaggtaaag tttgacatag cgtttgaaca ccgaatgggc attgatggtg gccaaaacat
     8221 aacccggtag accatcgagt atgcctaatc taatgatgta ttgatgccaa aagcgatacc
     8281 agggccgcca aataagttgt tggagtcctg cttttttacc cacttcaaag gacatttgcg
     8341 cttgcagcgt gctgtattgg tccagttttt tgagatactc gggcatggac ttataggtgt
     8401 gatggggann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8521 nnnnnnnnnn nnnnnnnnnn nnnnggcaga cgtgttttga gttttccagt gcggccatta
     8581 acgtccatag tttcgtggac gaaattgcca ttgtaacggc aagcgctttt gcgccctagt
     8641 ctaatcaccc aatcggtttg aaaaccggaa tacttgattt ttttacccat gaagtagagt
     8701 tgacgtcgga cataatagcc atcgtgagca cctcgcgcaa ctgcctgcaa aatttcttgt
     8761 ttcaaagcgg ggacgacttc ttcgtcaggg tcaaaaaaga ggacccaggg atgcactact
     8821 tggtcaatac caaagttttt ttgggcgcta aaattgtcaa acggccttgt gaaaaccgat
     8881 acatttttaa acnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncattttt
     9061 aaactgctgc gcctgcttca ccgtatcgtc ttcactgccc gaatccacta aaacaatttg
     9121 gtccacaaaa ctgagttggg tcaaaaattg ctcaataatt tgaccctcgt ttttggtgat
     9181 gaccacagcg ctgatttttt cagaagtcga cacagaaatt gctttagcgg taaagataat
     9241 caaattcagg ggcacatggc ttcacgccta acgccttttg cctcgctcgc cgcagtttgc
     9301 caacaaaaat atccctaatt ttacacccaa ttcataagcg ggtttatttg acattagatc
     9361 acatcgtagt agccgaggat tttcaagacc agaaagcggt cctgatacag gctgctttga
     9421 attttgatca gacccaggct cccttaatcg gaactggcga tcgcaatgta atcaagcgca
     9481 tagaccttgg cggtttttct atggcggtca agtccttcaa acggcctaat tggatcaatc
     9541 gtttggttta tcgtcactgg cgaaaatcca aagcccatcg atcctatatt tatgcacaca
     9601 aactcaaagc actcggcatt ggcacaccgc agcctgtggc ctttatggag tcttatggcg
     9661 gtgctggcat tcaaagaagt ttttatttca gcttaaacgt tgatgcggat tacacctttc
     9721 gcgatttaat tcatcagccc gatctgccaa accgagataa aattcttgag tcttttacgg
     9781 cctttacctt tgagctccat caaaaagggg ttttgtttca ggatcattcc cctggaaata
     9841 ccttgataaa gatgcaagac gggaccccta gtttttattt ggtcgatcta aatcggatga
     9901 cctttaaacg tttgaccaag gctgagcgca tccaaaattt tgaacgactt accccgctaa
     9961 aagaaatggt cgataagatg ggtgaaacct acgcccgctt agcccattgg ccggttgatg
    10021 atctcaaaga gcaaatgtgg cgcgttactg aagattttca agagcgtttt catcgcaaac
    10081 gccgtttgaa gaaaaaattg ctgttctgga gaaagaaaac tgattaagcc ctcgtttagt
    10141 gaaactcaaa gaatttccca tatcgatttt ccacgcagcg cgactcaatt tgacggctcc
    10201 cgagcgattg ttgggcggct cccagcaggt tccggtaatt atttctatga cgacgattcc
    10261 gtcgcgcctc aggaaactcg ctttggtcct gataagtctt ttgcaacaga cggttcgccc
    10321 tgaaaaaatt gtcgtttgga tgcaccaaga gatgcaaagc caaattccca aagcagtaaa
    10381 gtctcttttg gaaaacccca aaacgcttga tttaattgag ctgagattta caccgctgaa
    10441 gtgttctcac aaaaaattaa tccataccat agacgcattc cccaatcata cgatcgtcac
    10501 ttgcgatgat gatttcatgt accacaaaga atggttaaat actttgtatc aggaccattt
    10561 ggcgtttcct aattctgtga ttgctcagca gattcgttcc attgagcgct ttgaagacgg
    10621 gcaattaaaa ccctacaaac agtggcgcta tcaacctgat ttaaatcaag atccaaattc
    10681 atttttggcc ataggtggca aaggcgtcct gtacccaaaa caggccctgc acccagatta
    10741 ttcgaatcaa gagcttttta tgcggttcgc ccctaaggct tacgatttgt ggtttaaggc
    10801 tatggaattg cgccaaaaca cccccgtgcg gcggtgtagc aaaatcgtcc cagagccgat
    10861 acctattatg ggaacacaga gtttttcact caaaaaagag aacgttgatc gcgatttaaa
    10921 tttgcagcag tggcaaagtc tctcggacca ttttaacttg ccggtttaaa ctaaattttt
    10981 ttgtaaaacg ttaagcaata cggcgcgcca agggctttct tctttggagc tattgtcctg
    11041 tactgctgtg gcgcaggcaa aatgaattga gtaaaggagc aaagagttca aatgtgaacg
    11101 ccttataaaa ttgctgatga tttttgcgca cttctttgtt tgagaatccc tgaaataaat
    11161 ccggagtaaa gtcttttaga tggaggccta tatggatttg tccatcgtca aaactattcc
    11221 aagccgcttt attgatccaa ggggaaaata aagtaaatgt tgggatgttt aacgccttgg
    11281 ccatattcac cgcgccacct tcattaccca ccagatagtt catatgagat aaaagggcta
    11341 aaaattcacg gaggttttgt ccatagacct caggatgcac gcagacgcga tttttttctg
    11401 ggaccaaagc gagtatggcc tctacggact gcttttgatg gggcatatag ttcagcagga
    11461 tatgggtatt gggttgttgt gccagggtgg tcaaaatctg agccatggtt tgcgcgggca
    11521 gcgatttatc tatgctgctg cctaaaacac taaccatcac tagggtctta gctcggtcca
    11581 gattatgggc gtctataatt tctttagccc aagaaatttc cttgggggtg agataaattt
    11641 ttggtctaaa ttcctgggct ttgactcgaa tttctgattc aggataaata agtctcaaac
    11701 ggtcctctat ggcattgccg gcatgggtat aaacctggct gctgggcttt gaggttcttg
    11761 agtaggccag taggctaaac cattttttat gtccgtagac tctgggggct cctgatggga
    11821 gaatcatcat caaactctcg agcttgccat aggcgtcaag gattaaatca tattgctctt
    11881 ttttgatctg attgatcaat ttgcgccatt gattccaaga ctttttgggc gtggatagaa
    11941 tgaattggtc aatatccgga tggccttgaa cgacagcctg tgtcccttga tggatcgcat
    12001 aatgcacttg agcttgtgga tataagactt taaaatgact acaaagcaga cttgagatca
    12061 atacatcgcc aatcattttt tgctgaatga ctaaaatttt tttaatcggc tttgggttca
    12121 tcaggactta ttcttctcgt agctaaggta cttattttgc cgtatctttg ccctatgaac
    12181 acgccgcaga tatccgtagt gatcagcact tataatgcct tggaatggct aaaaaaagtt
    12241 ttatggggtt atgcacagca gacttttaaa gactttgagt tagttattgc cgacgacggt
    12301 tcccgtgcgg agactgggga atatgttgcg gcctttgccc aagaaacagg gattgcgctg
    12361 caacacattt ggcaagaaga tgacgggttt caaaaatcgc gtattctcaa taaagccttg
    12421 gcggcttgtc gcgcagatta tattgtaatg agcgatggcg attgtattcc tcgaaaagat
    12481 tttttagccg tacactacgg tcatcgggaa aagggttatt ttttatcagg cgggtacttt
    12541 atgttgccca tggagacctc caaagctatt gacaaagagg ccatagtttc gggcgtttgc
    12601 tttgataaag cctggttact tcaaaaggga atggcgtcga ctttcaaatt tcacaaatta
    12661 accgctggta agactttagc caaaattctc aatacactta cgcccaccaa tgcgagttgg
    12721 aatgggcata acgcctcagg atggaagaca gatctcttgg cgatcaatgg gtttgatcag
    12781 cgcatgcaat acggaggaca agatcgagag ctcggcgagc gattgatgaa ttacggcatc
    12841 aaaagcaagc aaattcgcta tagcgcagtt tgcattcatt tggatcatcc gcgcggctat
    12901 aaaaaccaag agtccataga taaaaataga gccatacgca gcgcgacacg caaagaaaaa
    12961 cgcgtttgga cggactttgg gttaatcaaa aagtaattct cggttttata ccgccacgtt
    13021 gtacgttctc aaagcgtcgt ttagggacgt ctttttgtct gttgacggtt tgcgtgttcc
    13081 aatgatcagg gcgcaaggta cttgataatt tccagcagga aattctttgg tataactccc
    13141 aggaattacc acacttcctg cgggaacacg accgcgcatt tctttgggtt cagggcctgt
    13201 gacgtctatg atttttgttg aggccgttaa cacaacattc gcccccagta cagcttcgcg
    13261 ctcgatgtga acgccctcga ccacgataca tcgcgaaccg ataaaagcat cgtcttccac
    13321 aataaccgga acggcttgca aaggttctaa aacacc
//
LOCUS       DPUP01000172            4778 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10330,
            whole genome shotgun sequence.
ACCESSION   DPUP01000172 DPUP01000000
VERSION     DPUP01000172.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4778)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4778)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1058
                     /locus_tag="DHV98_06470"
     CDS             <1..1058
                     /locus_tag="DHV98_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HCK05994.1"
                     /translation="YLGSFSFGPTEVPRWKWEQFPVSSYEEYQYLKKNLNQAQAVAFN
                     LNVRNETIKFEDRSVENANIGAFSHEYYDIESLQLDQGRFYNELESNNGAQVVVIGHE
                     IATSLFYEAEQAVGKKVRLYGKKFTVIGVLKKEGSIFNDSKDTFVFVPVNVIRNIFGA
                     NNRNLFPFIIMKPKPGTDNEAFIADLKLKMRLKRGLRPEQEDDFFVNQLQGFADAIDD
                     ITGTMNFIGIIISAFSLLVGGFGIANIMFVSVKERTSLIGIQKSLGAKRRFILYQFLF
                     EAMILAIIGGIFGLILVFIASIIASQFTGDFEFVLSPFNMLIGTVVAALIGLISGILP
                     ALKASKLDPVEAIRTGM"
     gene            complement(1085..2791)
                     /locus_tag="DHV98_06475"
     CDS             complement(1085..2791)
                     /locus_tag="DHV98_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015281096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HCK05995.1"
                     /translation="MDSPLNQNQIQKGIILNAYPDSLGGSISYLTRLLAEKNFSGVFQ
                     SLYLLPTVFHSDLDRGFSIIDYHLNESFITEEDLRQLKSLGIGLKLDIVLNHLSVGAP
                     EFQDLIEHGDHSPYLDFFIDWNRFWEGYGTLNAQGVVIPKAEFKEKLFTRKPGLPILQ
                     VPFPDNSFRPYWNTFYQKITLAVPFIEDCRLELNLDQEQSKALFKTIENELIQGNNPS
                     QAIESLGHNVLEVVPIIRRHLHMLGQMDLNAESASVWKYYEDTLKKLRDYGGQIIRLD
                     AFAYLHKAVGESNFFNVPETWQYLNRLQKMAQDLSLAVLPEIHAQYGKHLHDQVSAQG
                     FPIYDFFLPGLIIHTIENRDKAPLIKWAQEILEKGFRLINMLGCHDGIPLLDLDGDPE
                     HPASGDGLLSTNQIEALIEKIVARGGRIKNLFGPDGEKIAYYQVNATYFSALGEDTDK
                     MLLARALQLFMPGTPQIWYLDLFGGTNDYVAADTDQGNHKEINRTNLTHDQIQERINS
                     SLVLNQLELIRLRGHHPAFNGQLEIIDTDVDLIELRWTLAEDWAQLSVDLRQKSFSVT
                     HS"
     gene            complement(2784..3266)
                     /locus_tag="DHV98_06480"
     CDS             complement(2784..3266)
                     /locus_tag="DHV98_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014164865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HCK05996.1"
                     /translation="MNAPRQEVLNIFQNNAESFNTQLQQLCDLLQRTLNHYTWVGFYF
                     ANADTRTLHLGPYCGAPTDHTSIPFGKGICGQVAESNTPFLVPDVSAQDNYIACSLTV
                     KSELVVPLFVRGKNIGQIDIDSEQIDAFGQADIEFLEWVNAQIAQAWPEDYIPEEIHG
                     "
     gene            3358..3906
                     /gene="xrtF"
                     /locus_tag="DHV98_06485"
     CDS             3358..3906
                     /gene="xrtF"
                     /locus_tag="DHV98_06485"
                     /inference="COORDINATES: protein motif:HMM:TIGR04128"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase family protein XrtF"
                     /protein_id="HCK05997.1"
                     /translation="MMNLFKIYRPVWQFLLVFFGTYGVFSSLYFYYLDYWRARQVVDP
                     ITNLVGQQVQWTLKYLGFNGVVTPWAGTEDLVISVMNQPVARLVEGCNSLSVMILFAA
                     FVIAIPQKIARSLLFLLFGFMALYTINILRIVLISMGIYARPSWTTILHDLVFPGIIY
                     GTVLLLWIIWIWQYKSKVNSHG"
     gene            3779..4330
                     /locus_tag="DHV98_06490"
     CDS             3779..4330
                     /locus_tag="DHV98_06490"
                     /inference="COORDINATES: protein motif:HMM:TIGR04127"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosortase F system-associated protein"
                     /protein_id="HCK05998.1"
                     /translation="MRARVGPQSYMIWFFQGSFMVRFSCSGSFGFGSINLKSILMDSR
                     RFTALGFSIFGLFAVRFFESDLFYDPLIDFFKGGYQSESLPKINELSWGFNLLGRYLL
                     NAILSLIILNTIFQKKTIIQFSVILYGAIFLVFLPLLVVLIHYYVPGEYRGLFYVRRF
                     LIHPVLLLLLIPSFYMLGPKKNI"
     gene            4351..4770
                     /locus_tag="DHV98_06495"
     CDS             4351..4770
                     /locus_tag="DHV98_06495"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK05999.1"
                     /translation="MRHFLILLISFTLTFFSCQENPKNTPEYAQMERILAIHDAVMPE
                     MGTISGLIGQLEPAFVADSTLVNYAAAVEDLKMANGAMMQWMMDFSEDFTTDEIMGKT
                     MIDSEKQNLLDRYEESANGLKLKILGAIEQAQDLTKD"
BASE COUNT         1307 a          913 c         1046 g         1512 t
ORIGIN      
        1 tttatctggg gagtttttct tttggcccca cagaagtccc gcgttggaag tgggaacaat
       61 tccctgtttc ctcctacgaa gaatatcaat atttaaagaa aaacttaaat caagcgcaag
      121 cggttgcctt taacttaaat gtgcgcaacg aaacaataaa gtttgaagac cgttctgttg
      181 agaatgcaaa catcggtgcc ttttctcatg aatactacga tattgagtcc ttgcaattag
      241 accaaggaag attttacaat gagttggaat cgaacaatgg ggcacaggtc gtcgttattg
      301 gacatgaaat tgcgacatcc ttgttttatg aggcggaaca ggccgtaggg aaaaaagttc
      361 gactctatgg taaaaaattt acggtcattg gggtgcttaa aaaagagggt tctattttta
      421 atgactccaa agatactttt gtctttgtac cggtaaatgt tattcgcaat atatttggcg
      481 ccaacaatcg caatttgttt ccatttatta ttatgaaacc taagccggga acggataacg
      541 aagcctttat cgctgacctg aaattaaaaa tgcgcttaaa gcgtggattg cgcccagagc
      601 aggaagatga tttttttgtc aatcaattac aggggtttgc tgatgccatt gacgatataa
      661 cggggacgat gaattttatc ggtattatca tcagtgcgtt ttccctattg gtcggtggtt
      721 ttgggatcgc taacattatg tttgtcagtg ttaaagaacg cacaagttta attgggattc
      781 aaaagtcttt gggcgccaaa cgtcgtttta tcttgtatca atttttattt gaggcgatga
      841 ttctggcaat tatcggaggg atttttggtc ttattctggt ctttattgcc tcaataattg
      901 cctctcaatt tacaggtgat tttgagtttg tgctctctcc gtttaacatg ctcataggga
      961 cggtagttgc ggccttaatt ggccttattt caggaatatt gcctgcgtta aaagcctcta
     1021 agctcgatcc agtcgaggcg atccgtacgg gaatgtaatg aacacgccaa tatcgctctt
     1081 taagctagga gtgcgttacc gagaaactct tttgtcggag atccacgctg agttgagccc
     1141 aatcttcagc caatgtccaa cgaagctcaa tgaggtcaac atcagtatca ataatctcca
     1201 attgtccatt aaaagcagga tgatgcccgc gcaacctgat taattcaagt tggtttagaa
     1261 caagtgatga attgatcctt tcctgaattt ggtcatgagt caagttggta cggtttattt
     1321 ctttatggtt cccttgatct gtatcggcgg ccacatagtc gttagtaccg ccaaacaaat
     1381 ccagatacca tatttgcggt gttcccggca taaaaagttg cagtgcgcgc gccaagagca
     1441 ttttatcagt atcctcgcct agagcactaa aataggttgc attaacttga taataagcga
     1501 ttttttcccc gtcagggcca aaaagattct taatgcgccc tcctcgggct acaatttttt
     1561 cgatcaacgc ttcgatttga ttcgtagaaa gcagtccgtc accactggcc ggatgctctg
     1621 gatctccatc gaggtccagt aggggaatgc catcgtggca tccgagcata ttgatgagtc
     1681 taaagccctt ttctagaatt tcctgagccc atttgatcag tggcgcttta tcgcgatttt
     1741 caatggtgtg aataattaat ccaggtaaga aaaaatcata aattggaaag ccttgagcac
     1801 tgacttgatc gtgaagatgt tttccatatt gtgcatggat ttcaggtaaa acggctaagg
     1861 acaagtcttg tgccattttt tgcaatcgat tcaggtattg ccaagtttcg ggaacattaa
     1921 aaaagttact ttctccaaca gccttgtgca aataagcaaa ggcgtcaagg cgtatgattt
     1981 gcccgccata atcgcggagt ttttttagcg tgtcttcata gtatttccag acagaagcgc
     2041 tttcagcatt gagatccatc tgtcctaaca tatgcaagtg tcgcctaatt atggggacca
     2101 cctccaggac attgtgccca aggctttcga tcgcttgact tggattattg ccttgtatga
     2161 gctcattttc aatggttttg aacagggctt tgctttgctc ttggtctagg tttaattcaa
     2221 gacgacaatc ttcgataaaa gggacggcaa gggttatctt ttggtaaaat gtattccaat
     2281 aaggtctaaa actattgtct gggaatggaa cttgcaaaat cggtaagccg ggtttccgcg
     2341 taaaaagttt ttctttgaat tcagcttttg gaatgacaac gccctgggcg ttaagtgtcc
     2401 cataaccctc ccaaaaacgg ttccaatcga taaagaagtc gagataggga gaatgatcgc
     2461 catgctcgat caagtcctgg aactctggag cacccaccga aaggtggttt aacacaatat
     2521 ccagttttaa tccaatccct aaagatttta actgacgtaa atcttcctcg gtaataaagg
     2581 actcatttaa atggtaatca ataattgaaa agcctcgatc caaatcggaa tgaaaaaccg
     2641 tgggcaaaag gtacaggctt tgaaaaacac cgctgaagtt tttttcagcg aggagtctcg
     2701 ttaaatagga gatggaccct cctaaactat cggggtaggc attgagaatg atgccttttt
     2761 gaatttgatt ttgatttagt ggactatcca tgaatttctt cgggaatata atcttcaggc
     2821 caggcttggg caatttgggc attaacccac tccaaaaatt cgatatctgc ttgaccaaag
     2881 gcgtctatct gttcagagtc gatatcaatt tgtcctatat tttttcctcg gacaaataaa
     2941 ggcacgacga gttcagattt aaccgttaaa ctacaggcaa tataattgtc ttgcgcactg
     3001 acgtcaggca ctaaaaatgg cgtgttagat tctgctacct gcccacaaat tcctttgcca
     3061 aaggggatac tggtgtgatc cgttggggca ccgcaatagg gtccaagatg tagggttctt
     3121 gtatccgcat tggcgaaata aaagcccacc caagtgtagt ggtttaaagt acgttggagt
     3181 aggtcacaca attgctgaag ctgggtgtta aatgattcag cattattttg aaagatgttc
     3241 aaaacctcct ggcgtggcgc attcatattt caatttttat gtaaaggtat ttaattattg
     3301 ctttattgct gtcgaacatt ggggtttcct aaaggataaa aaattaactt tgatcgtatg
     3361 atgaatttat tcaaaattta tcggcccgta tggcaatttc tcctggtttt tttcgggacc
     3421 tatggcgttt ttagcagtct ttatttttat tacctagact attggcgagc gcgacaggtg
     3481 gttgatccga ttaccaactt ggtggggcaa caagttcaat ggaccctaaa atatctggga
     3541 tttaacggtg ttgtgacgcc atgggccgga acagaagact tagtgatatc cgttatgaat
     3601 cagcctgtgg cacgcttggt tgaagggtgt aattcgttga gcgtcatgat tttgtttgcg
     3661 gcatttgtca tcgcgatacc acaaaaaata gcacgttctc tcttattcct tctttttggc
     3721 tttatggccc tgtataccat caatattttg cgtattgtac tcattagtat gggtatctat
     3781 gcgcgcccga gttggaccac aatcctacat gatttggttt ttccagggat catttatggt
     3841 acggttctct tgctctggat catttggatt tggcagtata aatctaaagt caattctcat
     3901 ggatagtcgt cgatttactg ctttggggtt cagtattttt ggtttgtttg ccgtgcgctt
     3961 ttttgaatct gatctctttt atgatccatt aattgatttt tttaagggag gctatcagtc
     4021 ggaatctttg ccaaaaatca atgagctgag ctgggggttt aatttattgg ggcgttacct
     4081 attgaatgct attttatctt tgatcatatt gaatacaatt tttcaaaaaa agacgataat
     4141 tcaattttct gtaatccttt atggagcgat ttttttggtt tttctaccgt tattagtggt
     4201 gctcattcat tactatgttc caggggaata tcgaggatta ttttatgtcc gccgtttttt
     4261 aattcatcct gtcttacttt tgttattaat cccgagcttt tacatgcttg ggccaaaaaa
     4321 aaacatttaa ttttgctaaa aatcacgaac atgcgccact ttttaattct attaatttcg
     4381 tttacgttga cctttttttc ttgccaagaa aatccgaaaa acacaccaga atatgctcaa
     4441 atggagcgca ttttagccat acacgacgcg gtgatgccag aaatgggcac aataagtggt
     4501 cttattggtc aattggagcc tgcatttgtc gcagactcaa cgcttgtgaa ctacgccgcg
     4561 gcagtggagg atttaaaaat ggctaacggg gcgatgatgc aatggatgat ggattttagt
     4621 gaggatttta caacggatga aattatgggg aaaaccatga ttgactcaga aaaacaaaac
     4681 ctgctggatc gctatgaaga atctgcaaat ggtcttaaat taaaaatact cggggccata
     4741 gaacaagctc aggacttgac caaggattaa attcaacg
//
LOCUS       DPUP01000173            5768 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_14034,
            whole genome shotgun sequence.
ACCESSION   DPUP01000173 DPUP01000000
VERSION     DPUP01000173.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5768)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5768)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5768
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(42..>868)
                     /locus_tag="DHV98_06500"
     CDS             complement(42..>868)
                     /locus_tag="DHV98_06500"
                     /inference="COORDINATES: protein motif:HMM:PF01790.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06000.1"
                     /translation="LKVKGLKFRLVDRLRRGYDFFQVMDRMIIAVAIGCALIRMGNFV
                     NSEIIGLPTDSDYGVLFVKPVEDRIKGQLPFVERVHFEETGAFYAPGQAVINTKIYFE
                     HEPYKEQRIRNSVQKRLDYLLPRQGNGYSHVINPWAAALVHEFKRSPTQFVLEFESVG
                     VYRHPAQLYESITYFLIGVFMFLIWHKHLIRLRPGSLLGFFFITAFIGRFLLEYVKEN
                     QVKNEVITINSELAIGLNLGQTLSIPFIVLGFYLLFRNVNGNSFFWHVPQSNNELI"
     assembly_gap    869..931
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<932..1276)
                     /locus_tag="DHV98_06505"
     CDS             complement(<932..1276)
                     /locus_tag="DHV98_06505"
                     /inference="COORDINATES: protein motif:HMM:PF01790.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HCK06001.1"
                     /translation="MLYFSFLWHPDIYLFENNVFSISWYSLLFLSGFIIGRFIVVRSY
                     KLEKGYDLTVDMQMIYMVLGTLIGSRMGHVLFYEPEILKRGYLELFFFWKSGLASHGA
                     AIGILLGMAVYSY"
     gene            complement(1298..>2405)
                     /locus_tag="DHV98_06510"
     CDS             complement(1298..>2405)
                     /locus_tag="DHV98_06510"
                     /inference="COORDINATES: protein motif:HMM:PF00884.21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HCK06002.1"
                     /translation="PEGGGNWGNTNAPAEGLHPNEITIAEVLKGVGYATAMTGKWHLG
                     DNPNFLPTRQGFDAYFGIPFSNDMNRTKLPLLIGEEISEINPDQALLTQRYTDFAIDF
                     IEENNDDKPFFLYLAHTMPHIPIYASEKFKGTSKGSVYGDVIEEIDYNVGRLVQTLKA
                     KGQFENTIIVYTSDNGPWLNFGSHAGTSGELRGGKYDVFEGGYRVPCVISWPNGIAPK
                     THIDQLVSTIDLLPTICAATGAKLPKNKIDGVNVLDLLQNKPMPELEDRPFYYHKGDK
                     LFGVRQGPWKYLAPSTFNAIHQPGEDGKPGVSTWAENHPEALYHLDTDLRELDNRLED
                     FPEKVTTLKDQMARFQKEQDTEGRPLGSLDNINK"
     assembly_gap    2406..2574
                     /estimated_length=169
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2575..2869)
                     /locus_tag="DHV98_06515"
     CDS             complement(<2575..2869)
                     /locus_tag="DHV98_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018475042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HCK06003.1"
                     /translation="MKYIFYLLAAVVIISCDTTSKKSNTPPNVIIIFTDDQGYGDLSS
                     YGSKTIDTPNIDNLGAGGAIFSDFLTASSVCSPSRAALLTGAYPTRVGVVNVLW"
     gene            complement(2917..3780)
                     /locus_tag="DHV98_06520"
     CDS             complement(2917..3780)
                     /locus_tag="DHV98_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012842883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06004.1"
                     /translation="MDAETDDEIPVKITFIDEGNGYSNIRYKGGESFWQTKPMIPESS
                     ADGAVAVWSITEMMKPGEWEWGISAHDVLIDNNNAWLPSLLNLKNRKINISADGRISG
                     DVSIRIPNQGFDAKAGFTASKEDMESIGTNVFGKTQRVNTTLAKQLAYYLVLYSPMQM
                     ASDFIENYENQPAFAFIKEVPVDWQTTEVIDGEIGEYVTIARKDSNSEDWYLGSITNE
                     KSRDFSIPLDFLDEDKKYVATIYRDAKDAHWEHNPLALTIEEATLEKRNKLRLKLAPG
                     GGVAVSIKALD"
     assembly_gap    4031..4147
                     /estimated_length=117
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4148..4996)
                     /locus_tag="DHV98_06525"
     CDS             complement(<4148..4996)
                     /locus_tag="DHV98_06525"
                     /inference="COORDINATES: protein motif:HMM:PF10566.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HCK06005.1"
                     /translation="MKKLGDLEKVVISDEITEFNIAKDAQSWWIKAYDPNRYEQLYSS
                     TPISEIDTVHTPLTMRFKNGIHLSIHEADLINYSAMQIAGRQSTSLHCDLAPWSNGDK
                     VRLDIPFKTPWRTIKITDTARDLIASHLTLNCNPPNKLGDVSWIKPSKYIGIWWGMIV
                     GKWTWGEGFRHGATNARGKEYIDFAAKHGFDEVLIEGASAGFTGLFPGDTVTTSYTKT
                     TPDFDLIEVQQYAKSKGVSLQAYHETSASTRNYMAQIDDAFSLMNQIGMQKAKIGHVG
                     QMMDKVE"
     assembly_gap    5067..5171
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5172..5637)
                     /locus_tag="DHV98_06530"
     CDS             complement(<5172..5637)
                     /locus_tag="DHV98_06530"
                     /inference="COORDINATES: protein motif:HMM:PF14508.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06006.1"
                     /translation="MKYLKMKETIQQAFRMGASNKITNHKTNTQTRTATSKKLTDMII
                     YKFKTVENAFWVFLATISIIGCADNGEYITISSPSETNTLKLTVDEGQLFYRVNHGNK
                     KVVALSQLGFKFKNGQSLLDDFEVVAVDFDDVDETWEQTWGEEKLIRNNYRAC"
BASE COUNT         1521 a         1167 c          964 g         1662 t
ORIGIN      
        1 actgcaattc cacttcgtac ttatcaatta atcatagtct tttagataag ctcgttattg
       61 ctttgtggga catgccaaaa aaacgaattc ccattaacat ttctaaataa aaggtaaaag
      121 cccaaaacaa tgaaaggtat gcttagtgtt tgtcccaaat ttaacccaat agccaattcg
      181 ctatttatcg taatgacttc attttttacc tgattttctt ttacatactc caataaaaat
      241 cttcctataa aggctgtaat aaaaaagaag cccaacaaac tacctgggcg aagtcttata
      301 aggtgtttat gccaaataag aaacataaaa acgcctatca gaaaataggt tatggattca
      361 tatagttgtg caggatgacg atatacaccc acagattcaa attccagcac aaactgggtg
      421 ggacttcgtt taaattcatg taccaacgcc gctgcccatg gattgatcac atggctgtaa
      481 ccattaccct gtctgggcaa tagataatcc agtctctttt gaacgctatt tcggatgcgc
      541 tgctctttat aaggctcatg ttcaaaatat attttggtat ttataacagc ttgtccaggt
      601 gcataaaaag cacctgtttc ctcaaaatga acacgttcaa caaaaggcaa ctgcccttta
      661 atcctatctt ctactggctt tacaaacaac accccatagt cgctatctgt aggaaggcca
      721 atgatttcgg agttgacaaa atttcccatg cgaataagcg cacaaccaat ggcaactgca
      781 ataatcatac ggtccattac ttggaaaaaa tcatagccac gtctcaatcg gtctacaagt
      841 cgaaatttta aaccttttac ttttaatcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nataggaata gacagccatg cccaataaaa
      961 taccaatagc tgcaccatga cttgctagac cgcttttcca aaaaaagaaa agctctaagt
     1021 agcctctttt taatatttcg ggttcgtaga aaaggacatg ccccattctt gagccaatca
     1081 gggtgcccaa aaccatataa atcatttgca tatcaaccgt taggtcatag cctttttcaa
     1141 gcttgtatga ccttaccaca ataaatcgac cgataataaa ccctgataga aaaaggaggc
     1201 tataccaact gattgaaaac acattatttt caaataaata aatatctgga tgccacaaaa
     1261 aagagaagta taacaaatta aatgtttaag gtttatgcta tttgttgata ttatccaatg
     1321 agcctaaggg tcttccctct gtatcttgct ctttctgaaa acgtgccatt tggtccttca
     1381 acgtggtcac cttttcgggg aaatcttcca gtcgattatc caattctctt aaatctgtat
     1441 cgagatgata tagcgcctct ggatgatttt ccgcccaggt tgaaacaccc ggtttaccat
     1501 cctctccagg ctgatgaatg gcattaaaag ttgaaggtgc taaatacttc cacggtcctt
     1561 gacgcacacc aaacagctta tcccctttgt ggtagtaaaa cggacggtcc tctaattcgg
     1621 gcatgggctt gttttgtaac aaatctaata cattgacgcc gtcaattttg tttttgggta
     1681 atttggctcc agtcgctgca caaattgtgg gcagtaaatc aatggtcgaa accaattggt
     1741 ctatgtgggt tttgggagca atgccgttgg gccatgaaat aacacaaggc acgcggtatc
     1801 caccttcaaa aacatcatac ttaccgccac gcaattcgcc agaagtacca gcgtgacttc
     1861 caaagtttaa ccacgggccg ttgtccgagg tatatacaat aatggtgttt tcaaactgtc
     1921 cttttgcttt aagcgtttga accaatcggc ctacgttata atctatttct tcaatcacat
     1981 cgccatagac actgccttta gaagttcctt taaacttttc tgacgcataa atgggaatgt
     2041 gtggcatggt gtgtgccagg taaagaaaga aaggcttatc atcgttgttc tcttcaataa
     2101 aatcaattgc aaaatcggta tatcgttgtg taagtaatgc ttgatcggga ttgatttcag
     2161 aaatctcctc acctatcaaa agaggaagtt tagttctatt catgtcgttg gaaaacggaa
     2221 taccaaaata ggcatcgaac ccttgccgag taggtaagaa attggggttg tcccctaaat
     2281 gccattttcc agtcatagct gtggcatacc ccacaccttt taaaacttct gctatggtaa
     2341 tttcattggg atgcaaaccc tcggcaggtg catttgtgtt tccccaattg ccaccacctt
     2401 caggcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngccaaa
     2581 gtacattaac aacgcctacg cgtgttggat aggcccctgt caaaagtgct gccctagatg
     2641 gggagcaaac ggatgaagcc gttaaaaagt ctgaaaagat agcaccaccg gcacccaagt
     2701 tatcgatatt gggagtgtct atggttttag agccataaga acttaaatct ccatatcctt
     2761 ggtcgtctgt aaaaattatg atgacattcg gaggtgtatt actttttttt gaagtcgtat
     2821 cacaagaaat gataactact gcagccaata gataaaatat atatttcatt ttaaaggttt
     2881 ttgtgttatt tatgtgtctt ttaaattgtt aagcttttaa tcaagtgctt taatgctaac
     2941 tgcaactcct cctccaggag cgagttttaa ccgcagcttg ttacgctttt ctaatgttgc
     3001 ttcttcaatg gttaaggcca atggattgtg ctcccaatgc gcatctttag cgtctctata
     3061 aatggttgct acgtattttt tgtcctcatc taaaaagtca agcggaatgg aaaaatctct
     3121 ggatttctcg ttcgtaatcg agcccaaata ccagtcctca ctgttgctgt ctttccgtgc
     3181 gatggtcaca tattcgccga tttcaccatc aataacttct gtagtttgcc agtctacagg
     3241 tacttcctta ataaacgcaa aggcaggttg attttcataa ttttcaataa aatcagaagc
     3301 catctgcata gggctataca gcaccaaata ataggccagc tgcttggcta aagtagtatt
     3361 gacacgttgt gtttttccaa acacattggt accaatggat tccatatcct ctttggaagc
     3421 ggtgaagcct gctttagcgt caaaaccttg attgggtatc ctaatgctaa catcccctga
     3481 gattctacca tccgccgaaa tatttatttt tctgtttttt aggtttaata aacttggcaa
     3541 ccaagcatta ttattatcta ttaatacgtc atgtgcgcta attccccatt cccattctcc
     3601 gggtttcatc atttcggtaa tggaccaaac agcaacagca ccatcggcac tactctcagg
     3661 tatcatgggt ttggtttgcc aaaatgactc cccgcctttg taacggatat tagagtagcc
     3721 attgccttca tcgataaatg tgatttttac cggaatttca tcgtctgttt ctgcatccat
     3781 tttttggtaa agcaagtcaa aaattccagg tgtgaaatcc ataggagcct ccaacattct
     3841 agtaaatgga agtatggtgg tgtggcttac gggattgccg ccattccccc aagcattgta
     3901 ttccattccc ttcgcacctt ctctagttaa catattagga tatgtacgcc gttcccctgt
     3961 gtcttttatt ggctcgtgaa agtttaccgc tactttgtat tcagctgctt tctccaatac
     4021 ttttctgtag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4141 nnnnnnnttc taccttatcc atcatttgac caacgtgacc aatttttgcc ttttgcatgc
     4201 ctatctgatt cattagcgaa aaagcatcat ctatttgagc catataattg cgtgtacttg
     4261 cgcttgtttc atggtatgct tgtaaggaaa ctcctttaga cttggcatat tgttgaactt
     4321 ctattaaatc aaaatctggc gtagttttgg tgtagcttgt tgttacggta tctcctggaa
     4381 acaagcccgt aaatccagca gaagcccctt caatcaacac ctcatcaaag ccatgttttg
     4441 ctgcaaaatc aatatattct tttcctctag cgtttgtggc tccatgccta aagccttcgc
     4501 cccatgtcca ctttcctact atcatacccc accaaatacc tatgtactta gaaggcttaa
     4561 tccacgacac atcgcccaat ttattgggcg gattacagtt tagcgtgagg tgcgaagcaa
     4621 ttaaatcacg tgccgtatct gtaattttga tggtgcgcca aggggtttta aaaggtatgt
     4681 ctaggcgtac tttgtcacca ttggaccaag gggccaaatc gcaatgaaga ctcgttgatt
     4741 gtcgcccagc aatttgcata gcagaataat tgattaaatc agcctcgtga atacttaggt
     4801 gtatcccatt tttaaaccgc atcgttaacg gggtatggac cgtatcgatc tccgatattg
     4861 gcgttgagga ataaagctgt tcatatcggt tgggatcata tgcttttatc caccacgatt
     4921 gcgcatcttt agctatgtta aactcggtta tctcatcgga aataaccacc ttttccagat
     4981 cacctaattt tttcacatgg tatctaaatg caacaccatc gtcataagca cgtacgataa
     5041 tatcaaactg gtgatcaaca tttcctnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5161 nnnnnnnnnn ntacaagcac ggtaattatt tctaatcaac ttttcctctc cccaagtttg
     5221 ctcccaagtt tcatccacat catcgaaatc aacagctaca acctcaaaat cgtccaaaag
     5281 cgactgaccg tttttaaatt taaatccaag ttgagacagt gcaacaacct ttttattgcc
     5341 gtgatttaca cgataaaata attgaccctc atccactgtc agttttagtg tgtttgtctc
     5401 ggaaggagaa gatatggtaa tatactcgcc attatcagca caaccgatta tagaaatggt
     5461 agctaaaaat acccaaaagg cgttttcaac agttttaaat ttataaataa tcatatcagt
     5521 taattttttc gaagttgccg ttcttgtttg tgtatttgtc ttgtgatttg taatcttgtt
     5581 tgacgccccc atacggaaag cctgctgtat tgtctctttc attttcaaat atttcatcaa
     5641 actgttggac gattgctgga tggtcagctg caatatcttg ggattccgat tcgtctgtgc
     5701 ttaggtcgta tagttcaatg tcgctatcaa taccataacg gacggctttc cacttatcca
     5761 ttcgagca
//
LOCUS       DPUP01000174            9092 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10201,
            whole genome shotgun sequence.
ACCESSION   DPUP01000174 DPUP01000000
VERSION     DPUP01000174.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9092)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9092)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9092
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..733)
                     /locus_tag="DHV98_06535"
     CDS             complement(<1..733)
                     /locus_tag="DHV98_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015363399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase type III"
                     /protein_id="HCK06007.1"
                     /translation="MSTLRFQALKETLGRRPVSVNEPARRSEIFGQNVFNENAMRQYL
                     TKASFKAVQEAVLKGTKIERSVADQISTGMKEWAISKGATHYTHWFQPLTGATAEKHD
                     AFFETVEGGQAVEKFGGGQLVQQEPDASSFPNGGIRNTFEARGYTAWDPTSPAFIYGT
                     TLCIPTVFVSYTGEALDNKTPLLRSLQSLDQAATEVAKYFDKSVSKVIATLGWDQEYF
                     LIDKALVDARPDLKLAGRTLLGHSSA"
     gene            complement(877..1830)
                     /locus_tag="DHV98_06540"
     CDS             complement(877..1830)
                     /locus_tag="DHV98_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06008.1"
                     /translation="MSYLYLFLGLTALVIGGEYLVRAAVGLSFKLKLSKMIIGLTVVS
                     FATSAPELLVSLSAALNGYSAIALGNVIGSNIANIGLVLGITALISPIIIDNDFYKIN
                     WPVMFSVSVALTFLLIFQNGISVWAGSGLLACLLIYLFMLIKRNKRETPQEEDAIEGI
                     DESLAVVSGIKIGIWLIIGALALYFGSDWLVKGAVEIASDLGVSQRVIAVTVIAVGTS
                     VPELAASVIAALKKEKALSLGNLIGSNIFNIACVLGLTAMIHPIHINPAEFSPWDLYW
                     MIGFAAALLVLILLPSPHRIGRYEGLFLLIAYAVFISTTIN"
     assembly_gap    1931..2096
                     /estimated_length=166
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2122..2274
                     /locus_tag="DHV98_06545"
     CDS             2122..2274
                     /locus_tag="DHV98_06545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein"
                     /protein_id="HCK06009.1"
                     /translation="MKRGLFKILARLNKIILPSFTARRLDLAKAKKWQLALLAYRYWV
                     TINALG"
     gene            complement(2279..2791)
                     /locus_tag="DHV98_06550"
     CDS             complement(2279..2791)
                     /locus_tag="DHV98_06550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HCK06010.1"
                     /translation="MKLNESLIRTVPDFPKPGIQFKDITPLLKDPEGIKQCLHAMMPD
                     RETKVDVLVGIESRGFILGPLMAQSLNCGFVPIRKKGKLPHQTLEASYDLEYGSATIE
                     IHRDAIQPGDRVLLHDDVLATGGTAIAAIKLIEALGGEVVCCSFIIELTELKARPLIE
                     RYPIKVAYQF"
     gene            2961..3551
                     /locus_tag="DHV98_06555"
     CDS             2961..3551
                     /locus_tag="DHV98_06555"
                     /inference="COORDINATES: protein motif:HMM:PF13385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06011.1"
                     /translation="MNIKSIQSAVFTLLGLVCSHSLIAQIPQEGLQGYYKLDGNDYAN
                     YSTQNSVPLDPFPTGGFLLPAQNRYGEPDMALKLINQYLDTQSDPQIYDFSAENALSL
                     CLWMKIDETVIDWTGLLNNWAGFDVGGYYLGLTPNQEIRWNVNVDPPIDSSPITTGTW
                     VHVAAVYDGDTAYLYLDGNLAAQRVYGSNLLTSVYP"
     assembly_gap    3802..3911
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3912..4061
                     /locus_tag="DHV98_06560"
     CDS             <3912..4061
                     /locus_tag="DHV98_06560"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06012.1"
                     /translation="YDLKGALIDQKALSEPENEFDISNYSSGVYTFEFTTADGQKVQK
                     KIIKN"
     assembly_gap    4216..4403
                     /estimated_length=188
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4404..4743
                     /locus_tag="DHV98_06565"
     CDS             <4404..4743
                     /locus_tag="DHV98_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013135258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HCK06013.1"
                     /translation="YTSEHPQMTALRITIPPHTKLPVHRHPVINAGILLSGHLTVISE
                     AGDTLQMKAGDPIVEMVNQWHHGENNGDEPAEIVVFYSGNVDVPVTILKESQKTDQSP
                     HDGNSHDPYH"
     gene            complement(4673..5350)
                     /locus_tag="DHV98_06570"
     CDS             complement(4673..5350)
                     /locus_tag="DHV98_06570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002698299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin oxidoreductase"
                     /protein_id="HCK06014.1"
                     /translation="MIWNEQEISSADKVTRLRMINAITGIKPANLIGTQDASGRHNLA
                     VFSSVVHLGSNPALIGFILRPYGEVPRHTWQNIQATGHYTINHIPASMTEQAHRTSAK
                     FPEEVSEFERCGFTPEMVSGIRAPFVGESTLKMGLSFVSATEIPLNGTTLVIGKIIYL
                     SIPDHFIDEAGELDLAQANSAGISGLNTYYSLHKIGQYPYARLSDMDHENSHHADFDQ
                     SSETPSE"
     gene            complement(5546..6383)
                     /locus_tag="DHV98_06575"
                     /pseudo
     CDS             complement(5546..6383)
                     /locus_tag="DHV98_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002699880.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="cryptochrome/photolyase family protein"
     assembly_gap    5750..5835
                     /estimated_length=86
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6384..6505
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6506..6734)
                     /locus_tag="DHV98_06580"
     CDS             complement(<6506..6734)
                     /locus_tag="DHV98_06580"
                     /inference="COORDINATES: protein motif:HMM:PF04244.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cryptochrome/photolyase family protein"
                     /protein_id="HCK06015.1"
                     /translation="MLMHQGEPLGGQWTYDAENRLKFPKNAVVPVVEWPKKTAYHAEA
                     QQYTEAHFSENLGAFCDQFLYPLDHESAVLWL"
     assembly_gap    6796..6938
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6939..7334)
                     /locus_tag="DHV98_06585"
     CDS             complement(<6939..7334)
                     /locus_tag="DHV98_06585"
                     /inference="COORDINATES: protein motif:HMM:PF04244.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cryptochrome/photolyase family protein"
                     /protein_id="HCK06016.1"
                     /translation="MRTLSLILPHQLFSHNPVLKPDRPVVVIEETLLFNQFAFHKQKI
                     AFMRGSMRAYTDRLNGQGYAVRYIEAQEPEADIRYWLARAKENGLRELHLVDPVDNWL
                     ERRIIQEASGVDLCWYDSPAFLNTKADLSS"
     gene            complement(7331..>8278)
                     /locus_tag="DHV98_06590"
     CDS             complement(7331..>8278)
                     /locus_tag="DHV98_06590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002979729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06017.1"
                     /translation="MFVFCCYTGLGFKEMANLKKEDISIEFDGKPWIHVKRQKTGRAY
                     KIPILKKAQEIMDKYEEESDYTRELNQSAQMAEDCRHIPNLRFPSYYPELSCDRILTM
                     DWMYGQHLSQWCQKPFTPEQGQKIGQTLWDFYMYQMHVLRRIHADPHPGNFLIDDQDN
                     LMVIDFGCLKEIPEDFYEPYFELAQKENLQNPEYFERQLYALEILKPEDSPREKEFFY
                     SIFHEMLSLFTRPFHSETFDFSNQEFFDEIGALGQKYANDSALKEMNGNRGSKHFIYI
                     NRTFFGLYNLMFDLKAKDVEINNFKKYTQGAPAQQAVLV"
     assembly_gap    8279..8483
                     /estimated_length=205
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8484..>9092)
                     /locus_tag="DHV98_06595"
     CDS             complement(<8484..>9092)
                     /locus_tag="DHV98_06595"
                     /inference="COORDINATES: protein motif:HMM:PF13102.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HCK06018.1"
                     /translation="KTNSKGLCPIRCRLTYQKKRKEFSTGIFINPSNWNSKQQLVEPP
                     EPDEKYINTQLSLIRNKLNQSFLFLQVKGSPFNVMDIYIQYLGETPKDEMGVMEIYRI
                     YCDRIKKLVGIDLKEVTYKKYLESGKHLADYIRWKYKRKDIQLKSLKEAFLDDYSYFL
                     RTERNMAQSTLNKAIQRFRKVIKYAIAQDYLSKDPFMLYKPKT"
BASE COUNT         2364 a         1877 c         1590 g         2241 t
ORIGIN      
        1 tggcagaaga atgccccaaa agggtacgcc ctgctaactt aagatctggg cgcgcatcga
       61 caagcgcttt gtcgatcaag aaatattctt ggtcccaccc cagggttgcg attacttttg
      121 aaaccgattt atcaaaatac tttgccacct ctgtagccgc ttgatctaag gactgaagcg
      181 atcttaaaag tggcgtttta ttgtcaagcg cttctcctgt gtaagagaca aatactgttg
      241 gaatacaaag cgtggttccg taaataaacg caggagaggt tggatcccat gccgtatatc
      301 cacgagcttc aaacgtattg cgtatccccc cgttaggaaa actagacgcg tccggttctt
      361 gctgaaccaa ctgtccccct ccaaatttct ccacggcttg tcccccctct acagtttcaa
      421 aaaatgcatc gtgcttttct gccgtagctc cggtcaaagg ttgaaaccag tgggtataat
      481 gagtcgctcc tttggaaatc gcccattctt tcatcccggt agaaatttga tccgccacag
      541 aacgctcaat tttggttccc tttaagacag cctcttgaac tgctttaaaa gaagccttgg
      601 tcaaatattg acgcatggcg ttttcgttaa acacattttg accaaaaatt tctgaacgtc
      661 gtgcaggttc attaacagat actggtcggc gcccaagagt ttcttttagc gcctgaaatc
      721 ttaaagtgga catagtcgtt ggattattaa attattcggt aaaaataatt taaatcaaac
      781 aacgaccccc ctaaattttc aagtttgtta tgaaaaaagg gaattatttt attaacaacc
      841 ccctaaaaat taacaccaat cccgtgaatt gataaattaa tttatggttg tgctaataaa
      901 cacagcatag gcaatcaata aaaataagcc ctcatatcga ccaatccgat gtggactcgg
      961 taaaagaatg agcaccaaaa gtgccgcagc aaaaccaatc atccaataga gatcccatgg
     1021 agaaaattct gcaggattta tatgaatcgg atgtatcatc gccgttaatc ctaggacaca
     1081 agcaatatta aagatattgg agccaataag gtttcccagt gacaatgcct tttctttttt
     1141 tagggccgca ataacagaag ccgcaagctc tggcacactt gttcccacag cgataacagt
     1201 caccgcaata acccgttgac tcacgcccaa atcggaagca atctctacgg cccctttgac
     1261 cagccaatca ctaccaaaat acaaagcaag ggccccgata atgagccata tgcctatttt
     1321 aatgccagag acaaccgcca aggactcatc gataccttca atagcgtcct cctcttgtgg
     1381 ggtttctctt ttattgcgct tgatcagcat aaaaagatag atcagtagac aagccaatag
     1441 accagaaccc gcccatacag agattccatt ttggaaaata agcaaaaacg taagggccac
     1501 actgaccgaa aacatcacgg gccaattaat cttataaaaa tcattatcga taattatggg
     1561 actgatcagt gcagtaatgc ccaataccag gccaatgttg gcgatattcg aaccaattac
     1621 attcccaaga gcaatagcgc tatagccatt gagcgcagca cttagactca ccaatagttc
     1681 tggagcagaa gtggcaaagg agaccacggt gaggccaata atcattttgg agagctttaa
     1741 tttgaatgag agcccaacag ccgcgcgaac caaatactct ccaccgataa ccaaagccgt
     1801 taaccctaaa aaaagataca gatagctcat aaatataaag ttgcacgaag atacaaatta
     1861 ggcagcgctc gtgagtgctc gccgcttgaa tttttgtaat tttccaagca aattccgagt
     1921 tcatgaaacg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnaatt
     2101 tttcaagcaa attcccagtt catgaaacgc ggtttattta aaattcttgc tcggctaaat
     2161 aaaatcatct tacccagctt taccgcgagg cgtttggatt tagccaaagc taagaaatgg
     2221 cagctggccc tattggctta tcgctattgg gtgacgataa acgccttagg ctgagccctt
     2281 aaaattgata agccacttta atggggtaac gctcgatgag cggccttgcc tttagctcgg
     2341 ttagttcaat aataaacgaa caacacacaa cttcgccccc taaagcctct atgagcttta
     2401 tggctgctat agctgttccc cctgtggcca acacatcatc gtggagcaaa acccgatctc
     2461 caggctgaat cgcatcgcga tgaatttcta tggtggcgct cccatactca agatcgtaag
     2521 acgcctccag ggtttgatgg ggcaattttc cttttttgcg aataggaaca aagccgcagt
     2581 tcaatgattg agccatcagc ggccctagaa taaatccacg agattctata cccaccaaaa
     2641 catccacttt cgtttcccgg tcgggcatca tcgcgtgaag gcattgtttg atcccctcgg
     2701 ggtcctttaa aagcggggta atgtctttga attgaatccc gggtttaggg aaatcaggga
     2761 cagtgcgtat gagcgattcg tttaatttca tcgaagagca atttacaaaa ttatacccct
     2821 caataatgag cacacccctc gaattgttat ctggctattt ttgaccatcc cctgaaccgt
     2881 gcatgattga attaaatttt tcgctaactt taaaatctga caatcaacat tatcctaact
     2941 tctagactca ccaaaacaac atgaacatca aatcaatcca aagcgctgtt ttcactttat
     3001 tgggacttgt ttgcagccac agcctaattg cccaaatccc tcaagaagga ttacaaggtt
     3061 attacaaact cgacggcaat gattatgcca actacagcac ccaaaatagt gtgcctttag
     3121 acccatttcc aacaggtgga tttctacttc cagcgcaaaa ccgatatggc gagcccgata
     3181 tggcgttaaa attgatcaat caatatctgg atacacaatc tgatccccag atttatgatt
     3241 tcagcgccga aaatgcccta tccttatgtc tttggatgaa aatagatgaa accgtaattg
     3301 attggacagg gcttctcaat aattgggctg gctttgacgt cggcggctac tatctgggcc
     3361 tcaccccgaa tcaagaaatt cgctggaatg taaatgttga cccgccgatt gacagcagcc
     3421 cgatcacaac cggcacttgg gttcatgtcg ccgccgtata tgatggcgat acagcctact
     3481 tatatctcga tggcaacttg gcagcgcaac gcgtttacgg ctcaaatttg ttaaccagtg
     3541 tttatccctg acgctcttcc gatctagccg acgtccccac caatattttc ccgggtgttt
     3601 ttgatgacat tttaatttac aaccgcagct tgagcgccca ggaggttttg gatattgtcc
     3661 aagccctctc tattgaagat ttagacgcgt tcgagcgggc cgttcgccta ggccctaatc
     3721 caacgagcgg gccggtgcag atgacttacg acacgagttt tggtcgtctt actcagttaa
     3781 atatttatga tctgaaaggt gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnnnnnn ntatgatctg aaaggtgcct taatagacca aaaagctttg tcagaacccg
     3961 agaatgaatt cgacatcagc aattattctt cgggggttta cacctttgaa tttaccactg
     4021 cagacggtca aaaggttcaa aagaaaatca ttaaaaacta aagcgctaaa ggatgcgcta
     4081 caattattta attcacctgg gactgatgtc ctttgtgatc ctaagttgtg gtcaggaaca
     4141 gaccaaaagt tcattggaga tagatcgttt ttccaacgaa gcaacagcct cgagcaaagc
     4201 atcagcctcc agcgannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4381 nnnnnnnnnn nnnnnnnnnn nnnttacacc tctgagcatc ctcagatgac cgcattgcgc
     4441 attaccattc ccccacacac caaactccca gttcatcgtc atcctgtaat taatgcgggt
     4501 attttactta gcgggcattt gaccgtcatt agtgaagctg gagatacgct tcaaatgaag
     4561 gctggagacc ctatagtaga aatggtcaat caatggcatc acggtgaaaa taatggagat
     4621 gaacccgccg aaatcgttgt cttttactct ggaaatgtgg atgttcctgt aactattctg
     4681 aaggagtctc agaagactga tcaaagtccg catgatggga attctcatga tccatatcac
     4741 taagtcgagc ataaggatat tggccaattt tgtgtaaact gtagtaggta ttcaaaccag
     4801 aaatacccgc agaattcgct tgggctaaat ccaactcacc ggcctcatcg ataaagtgat
     4861 ccggaatgga taaataaatt attttaccga taaccaaggt cgtaccattc aaaggaattt
     4921 cggtggcaga aacaaaactc agccccattt taagcgtgct ttcaccgaca aagggtgccc
     4981 gtatgcccga aaccatttca ggggtaaaac cacaacgctc aaattcagaa acctcttctg
     5041 ggaattttgc cgaagtccta tgcgcctgct cagtcatgga cgctggaata tggttgatgg
     5101 tgtaatgacc cgtggcttgt atattttgcc atgtatgccg ggggacttcg ccataagggc
     5161 gcaagataaa gccgatcaaa gccggattgc tccccaagtg cacgacggag ctaaatacag
     5221 ccaagttgtg ccttcctgag gcgtcttgag tcccaattaa attagcgggt tttattcccg
     5281 ttatggcatt aatcatcctc agccgagtaa ctttatcggc tgaagatatc tcttgctcgt
     5341 tccagatcat gattaggcgc gattagccgt taatgctaaa agacctaaaa cgatgcacaa
     5401 ggcaaatgtt attaatacaa tgtttcctac tcccatgttg tgaatataat taattttcct
     5461 ttattcttct attgaaactg attcgtaacg gaacataaat tcaatctaac ttttattgtg
     5521 taaaacaggc ttagaaaatc atcttctaaa ccgattcatg atccagctga tccagaaatt
     5581 tttgtgcctg agtcaaatgc cgctcaagtg tttcaggctt cattttatct aaactgcgca
     5641 ccaacatagc caaacgcgga ttagagagaa aaaaagagcg gtgcttatcc ataaatcgcc
     5701 agaacaaacc atcccatatc tcttgccaag gacctttggg ataatcactn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5821 nnnnnnnnnn nnnnngtaat tactgccact gatatacggt tttgtactca tgattccgcc
     5881 gtcagcaaac aaactcatcc catagacatt tggcaccatt acccaatcga aggcatcgat
     5941 aaaatactcc ataaaccatc ggtaaacctc atcgggatca aattcacaaa ggaccataat
     6001 attgcccatg accataagac gctcgatatg atgcgcatag cccgtcttat tgagcttttt
     6061 aagcacagaa tcaacaggaa aaagccccgt cgttccttca taaaaacttt ttggaatttt
     6121 tcttttgtga ccccaaaaat tagtggtgcg ctcttgggag cctttgacct ggtaaattcc
     6181 ccttataaac tcgcgccaac ccatgatttg acgcaccagt ccctctgttg agttcagcgg
     6241 gattgaatgg gattgtgcat agtccaaaat cttatcaaga acttgatcag gggtaagtaa
     6301 ccctacatta attaggggcg agaacatact gtgatgaagc aaatgctctt gagccacaag
     6361 ggcgtcctcg taatggccaa aatnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnnnnn nnnnncgagc cataacacag ccgattcatg atccagagga
     6541 taaagaaact gatcacaaaa tgcccctaaa ttctcagaaa aatgcgcttc tgtgtattgc
     6601 tgtgcctcgg catgatacgc cgttttttta ggccattcaa ccacagggac cacagcgttt
     6661 ttaggaaact tcaagcgatt ttcggcgtcg taagtccatt gacctcctaa aggttccccc
     6721 tggtgcataa gcacattgcg tttcttgcgc tcttccttgt aaaacgcagt ctgaaaaaac
     6781 ttctttttat tgggtnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnag aggacaaatc cgcttttgta
     6961 ttgagaaaag caggactgtc ataccaacat aagtcaacac cagaagcctc ttgaatgatg
     7021 cgccgctcca accaattatc cacgggatca accaaatgca gttcacgcaa accgttttct
     7081 ttggcacgag ccaaccaata ccgaatgtct gcctcaggtt cttgagcctc gatatagcgc
     7141 acagcataac cctgaccatt caggcgatcc gtataggcgc gcatactgcc ccgcataaaa
     7201 gcaatctttt gtttgtgaaa agcgaactga ttaaagagca aagtctcttc gatgaccacc
     7261 acaggtcgat cgggttttaa aaccggattg tggctaaaaa gttgatgggg caaaatcaga
     7321 ctcaaagtcc tcataccaat accgcttgct gagcaggcgc cccttgagta tactttttga
     7381 aattgttgat ctccacatct tttgccttga gatcaaacat cagattatac aatccaaaga
     7441 aggttctgtt gatgtatata aaatgttttg aacctcggtt gccattcatt tctttcagcg
     7501 cactgtcatt ggcgtatttc tgacctaacg caccaatctc atcaaagaac tcctgatttg
     7561 aaaagtcaaa agtttccgag tgaaaaggtc ttgtaaacaa agacagcatc tcatgaaaaa
     7621 ttgaataaaa gaactctttt tctcttggcg aatcctctgg ctttaatatc tctaaggcat
     7681 aaagttgtcg ttcgaagtat tcgggatttt gcaagttttc tttttgggcg agttcaaaat
     7741 aaggttcata aaaatcctct ggaatttctt tgaggcaacc aaagtcaatg accatgaggt
     7801 tatcctggtc atcaattaag aagtttcctg gatgcggatc ggcatgaatt cgccgcaata
     7861 catgcatttg atacatgtaa aaatcccata gggtctgccc tattttttgt ccttgttccg
     7921 gggtaaatgg tttttggcac cactgggaaa gatgctgacc atacatccaa tccatagtca
     7981 atatgcgatc acaagaaagc tcaggataat agctcggaaa gcgcaagttc ggaatatgtc
     8041 gacaatcctc ggccatctgg gcactttgat tgagttctct agtgtaatct gattcctcct
     8101 catatttatc cataatctcc tgagccttct ttagaatagg aatcttataa gccctacctg
     8161 tcttctgtcg cttcacatga atccagggtt taccatcaaa ttcaatggag atatcctctt
     8221 tcttcaaatt agccatttcc ttaaagccta atcctgtata acagcagaat acaaacatnn
     8281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8461 nnnnnnnnnn nnnnnnnnnn nnngttttgg gcttgtaaag cataaaggga tctttgctca
     8521 gataatcctg tgcgatagca tactttatca cctttctaaa gcgctgtatc gccttgttta
     8581 aggtgctttg agccatgttc ctctcagtgc gtagaaagta gctgtaatcg tctaaaaaag
     8641 cctcttttaa gctctttaat tggatgtctt tacgcttgta tttccaacgt atataatcag
     8701 ctaaatgctt acctgattcc aagtacttct tgtaggttac ttcctttaaa tctataccca
     8761 ccaatttctt aatcctatcg cagtagatac ggtagatttc catcactccc atttcatctt
     8821 taggagtctc acccaggtac tggatataga tatccatcac attaaatgga gaacccttaa
     8881 cctgtagaaa taaaaaagac tgattaagtt tgtttcttat caggctcagt tgggtgttga
     8941 tgtatttttc gtcaggttct ggtggttcta ccagttgctg tttgctgttc caattggatg
     9001 ggttaatgaa tattcctgta gaaaattcct tacgcttctt ttgataggtt aacctacatc
     9061 taattggaca gagtccttta ctattcgtct ta
//
LOCUS       DPUP01000175            2817 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_28101,
            whole genome shotgun sequence.
ACCESSION   DPUP01000175 DPUP01000000
VERSION     DPUP01000175.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..434)
                     /locus_tag="DHV98_06600"
     CDS             complement(<1..434)
                     /locus_tag="DHV98_06600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015895130.1"
                     /note="has catalase and peroxidase activities; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase-peroxidase"
                     /protein_id="HCK06019.1"
                     /translation="MESHHSNGSSGGKCPFTNPSHRHTAAGALSNSDWWPNQLNLKML
                     HQNGPQTSPMDASFNYKEAFSNLDLEAVKKDLFDLMTDSQDWWPADYGHYGPFFIRMA
                     WHSAGTYRVGDGRGGASAGTLRFAPLNSWPDNGNLDKARRLL"
     gene            complement(558..2762)
                     /locus_tag="DHV98_06605"
     CDS             complement(558..2762)
                     /locus_tag="DHV98_06605"
                     /inference="COORDINATES: protein motif:HMM:PF06452.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HCK06020.1"
                     /translation="MTKTFYKLGLFLIFIPAFLFGQTPPPAQAKYTNTPPVIDGNLDD
                     EAWKKAKLLSDFRQNFPTDTLPAQHPTDIKFLFDDTYLYIAIRAQSSGDNFVARSLKR
                     DFRGSTTDNVSFFFDTFMDGVNAYQFGVNPYGAQRESLVSDGGIDRNSFNPDWDVKWF
                     SEGHIEGDSYVAELAIPFYSLKYPEGCTQWKMQAYRFDLQTNERSTWSRIDQNQLLSN
                     LGYLGVLNFDRPLPKNNNTSYFIPYVNFARSKDFELDTPRTDDTKVGFDVKIPVGSQM
                     NLDLTLNPDFSNVEVDDLINNISRFEVSLPEKRQFFLDNSDLFSSFGNARDAAPFFSR
                     RIGIASDLEGNTIQNDIIGGLRLSGKLNSNLRLGLLSLQTRADQANGIPSNNNSMLAL
                     QQRVFGRSQVGLFVINRDATGDQVLPEDYKTFNRVMGVDYSLASSNNKWTGKFFAHKS
                     LSDNDTAGNLSGQAQLRFNNRFWNIFTLALFVDEEFESDLGFIPRTGFIKKADKVTRS
                     FYPKSGSVNTYQLGCYNEFYFAQDLDYKQTDQTLKFEYIVNYKNQSQLELNYFMRYVY
                     LFDDFDPTRNDDALALPMGSEYNYNSWGLEYNSQPARLFTWGATASAGEFFNGKRFGL
                     RGRINYRTQPTFNMSVDFDYNDIRLANPYPSAKLFLIAPKLEWTFTKNLFWSNFIQYS
                     NFSDNFGINSRLQWRFAPMSDLFLVYNDGYDSVNFYKRYRSINLKLNYWFNI"
BASE COUNT          830 a          571 c          611 g          805 t
ORIGIN      
        1 caaagcaatc tgcgggcctt gtctaagttc ccattatctg gccagctatt gagcggtgca
       61 aagcgtaaag ttcccgctga ggctcctcca cggccatcac cgacgcggta agtccctgca
      121 ctgtgccatg ccatacggat aaagaatggt ccgtaatgtc cataatctgc aggccaccaa
      181 tcttgtgaat cggtcattag gtcaaacaaa tcttttttca cggcctctaa gtcaagatta
      241 ctgaaggctt ctttataatt gaaggaagca tccattggac tggtctgtgg tccattttga
      301 tgcagcattt ttaaattgag ttgattaggc caccaatccg aattagatag ggcgcctgcc
      361 gccgtgtggc ggtgagatgg attcgtaaac gggcattttc cgccgctcga tccgttagaa
      421 tgatgtgatt ccataataat tagttttttg ctaagttagt aagagaatcc atgggaattc
      481 acaacggcag atactaatcc tcaataatta gataaattct gcttattggg tctgaaatag
      541 ccttcacggg gctgaactta gatattaaac cagtagttta attttagatt gatggagcgg
      601 taacgcttgt aaaaattcac agagtcgtaa ccgtcattgt agaccaaaaa caaatcagac
      661 ataggcgcaa atcgccattg taggcgtgag ttaatcccaa aattatcgct gaagttgctg
      721 tactgaataa aattcgacca aaatagattt ttggtaaagg tccattctaa ttttggggcg
      781 attaaaaata atttagccga aggatatgga ttggctaatc gaatatcatt gtagtcaaaa
      841 tcgacactca tgttaaaggt tggttgggtg cggtaattaa ttcttcctct caagccaaat
      901 cgcttgccat taaaaaattc tcctgcacta gcggtggcgc cccaagtaaa taagcgcgca
      961 ggttgtgaat tgtattctaa gccccatgaa ttataattgt attcactgcc catgggtagc
     1021 gcaagggcat catcgttacg cgtcgggtca aaatcgtcaa acaaataaac atagcgcatg
     1081 aaatagttga gctccagttg cgattggttt ttatagttta cgatgtactc aaacttcagg
     1141 gtctgatcag tctgcttgta gtccaggtct tgtgcgaaat aaaactcgtt gtaacagccg
     1201 agttgatagg tatttactga accgctttta ggataaaaac tgcgggtgac tttatctgct
     1261 tttttgatga atccagtacg gggaataaag cctaaatcgg attcaaattc ttcatcgaca
     1321 aagagggcca aagtaaagat gttccagaat ctgttgttaa aacgcaactg agcttgcccg
     1381 gataaattgc ctgctgtatc attgtcacta agcgatttat gggcaaaaaa tttaccggtc
     1441 catttgttat tcgatgaggc aaggctataa tccacaccca taacgcggtt aaaagtcttg
     1501 taatcttctg gtaaaacttg atcccctgta gcgtctcggt taataacaaa aagcccaact
     1561 tgagaacgtc caaagactct ttgctgtagg gcgagcatac tgttgttgtt gcttggaatt
     1621 ccgttagcct gatccgctct tgtttgcaga gacaaaagtc caagacgtaa attgctgttt
     1681 aatttaccac tcagtcttaa gccaccgata atgtcatttt gaatggtgtt gccttcgaga
     1741 tccgacgcaa tgccgatacg tcttgagaaa aatggagccg catctcgggc gttaccaaag
     1801 cttgaaaaaa ggtcactgtt atccaaaaag aattgccttt tttccggcaa ggaaacttca
     1861 aatcttgaaa tattgttaat caaatcatca acttcaacat tggagaaatc tggattaagg
     1921 gttaagtcca aattcatttg gctgccgacg ggaattttca catcaaagcc aactttagtg
     1981 tcgtccgttc ttggtgtatc taattcaaaa tctttgctgc gcgcgaaatt aacataggga
     2041 ataaagtacg aagtattgtt gtttttgggt aaagggcgat caaaattcag gacccctaaa
     2101 tagcccagat tggagaggag ctgattttga tcaatgcgac tccaggtgct ccgctcattg
     2161 gtttgcaaat cgaatcgata agcttgcatc ttccactggg tgcaaccttc cgggtatttt
     2221 aatgagtaaa acggaatagc caactcggca acataggagt cgccctctat gtgtccttca
     2281 gaaaaccatt ttacatccca gtctggatta aaagaattac gatcaatccc gccatcggac
     2341 acaagagatt ctctctgtgc cccataagga ttgacgccaa attgataggc attgacccca
     2401 tccataaaag tgtcaaaaaa gaaagataca ttatccgtgg ttgatcctct aaaatcccgc
     2461 ttgagcgatc tggcgacaaa attgtcgcca ctactttgcg cccttatcgc aatgtagaga
     2521 taggtgtcgt cgaacaaaaa tttgatatcg gtagggtgct gagcaggcaa tgtgtctgta
     2581 ggaaaatttt gacgaaaatc actaagcaat ttggcctttt tccaagcctc atcatcgagg
     2641 tttccatcaa ttacgggcgg ggtattcgta tatttggcct gagcaggggg aggggtttgc
     2701 ccaaataaaa acgcagggat aaaaatcaga aataatccga gtttataaaa ggttttagtc
     2761 ataaaaaata atccccgcgt gctgattaat ttgacattat tttatctttt gaaagta
//
LOCUS       DPUP01000176            3706 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17944,
            whole genome shotgun sequence.
ACCESSION   DPUP01000176 DPUP01000000
VERSION     DPUP01000176.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3706)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3706)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3706
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>272
                     /locus_tag="DHV98_06610"
     CDS             <1..>272
                     /locus_tag="DHV98_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006262178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCK06021.1"
                     /translation="AIGTHAQKPLDVHLMIVDPDRYIQTFAELGAAILTVHYEACTHL
                     HRSLQAIKQQGMKAGVALNPHTPVSLLKDVLGDLDLVCLMSVNPGFG"
     assembly_gap    273..474
                     /estimated_length=202
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <475..696
                     /locus_tag="DHV98_06615"
     CDS             <475..696
                     /locus_tag="DHV98_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014083306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HCK06022.1"
                     /translation="QKFIEHTYQKVRELNSLRQEQNANFLIEIDGGVTSDNALALKEA
                     GADVLVAGSFVFNAEDPLATVAHLKKITQ"
     gene            702..1670
                     /gene="ypdA"
                     /locus_tag="DHV98_06620"
     CDS             702..1670
                     /gene="ypdA"
                     /locus_tag="DHV98_06620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012024853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpdA family putative bacillithiol disulfide
                     reductase"
                     /protein_id="HCK06023.1"
                     /translation="MPDKKDVLIIGGGPIGLACGLACLENQLSFTIIEKGVLVNSIYN
                     YPRNMRFFSTSDKLEIGGIPFISAQPKPNRDEALAYYGRIGEKLKSNLALYESVQSIQ
                     GVDQDYHVITDKQVHCGRKVILATGFYDLPKMLNVPGELSSKVRHYFSEGHPYAFKNT
                     IVVGASNSAVDAALEIFRKGGTVTMIVRGASIGERVKYWVKPDIENRIAEGSIKAYFK
                     SQITAIHPDHVTIKTPEGEKVLENDFVLALTGYRPNLSFLKENGITIEEEEFQKPKYN
                     PETMESNRPGLYLAGVICGGLQTHLWFIENSRVHATQIIAHIRTKG"
     assembly_gap    1788..1927
                     /estimated_length=140
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1928..2178
                     /locus_tag="DHV98_06625"
     CDS             <1928..2178
                     /locus_tag="DHV98_06625"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06024.1"
                     /translation="EGWGFESSLGHIKHKTTPSGVVLCFSKKTQTEGYGFTHKKSKPE
                     WLAFFHFALVLTALFNRHYRAKNYYWNANQGHHHRDSL"
     assembly_gap    2267..2363
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2666..2705
                     /estimated_length=40
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2706..>3706)
                     /locus_tag="DHV98_06630"
     CDS             complement(<2706..>3706)
                     /locus_tag="DHV98_06630"
                     /inference="COORDINATES: protein motif:HMM:PF12327.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HCK06025.1"
                     /translation="AARGIAEVITHHYTQNIDLRDAKTVLANSGTAIMGSAMAIGSNR
                     AKEAISKSLDSPLLNDNKIKGAKNVLLLIVSGSEEITIDEIGEISDYIQDEAGHSANI
                     IMGVGEDEALQGAIAITVIATGFDLEQQNHIVHTEAKKIIHTLEEEQRAAYDLSTDSL
                     PKQTVIKEASVESLRPSPKTQEPPVIRHTLFEDDDSESFTDKENPQSPLQDEISPDDS
                     IENVPANAAFESPFEDYIPTTELIRNIPVQAEHVDINFLAEFQQVVVNEIEVHDFEIV
                     CVDEALEQDHAPVENFAEENKSVDDQMLMFDLPINQQTPEEILAIEVHAEELVYEEL"
BASE COUNT          894 a          753 c          683 g          897 t
ORIGIN      
        1 gccattggca ctcacgccca gaaacccttg gatgtgcatt tgatgattgt agaccctgat
       61 cggtatattc aaacttttgc tgaattgggt gcagcaattc tcaccgtgca ctacgaagcc
      121 tgcacccatt tgcatcgcag cctacaagcc ataaaacagc agggcatgaa ggctggagtc
      181 gcactgaatc cgcatacccc tgtatcgctt ttgaaagacg ttttgggtga tctagatttg
      241 gtttgtctca tgagtgtaaa cccaggattt ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncaaaaa
      481 ttcattgagc atacctacca aaaggttcgc gaactcaaca gcctacgcca ggaacaaaat
      541 gcaaattttt taatcgaaat agacggcggg gtgaccagtg acaatgcact cgctttaaaa
      601 gaggccgggg ccgatgtact cgtagccggt agttttgtgt tcaatgcaga agacccatta
      661 gccaccgttg cccatctcaa aaagataact caatagcctc tatgccagac aaaaaagacg
      721 tactcatcat tgggggaggc ccaatcggtt tagcttgtgg tctggcttgt cttgaaaatc
      781 agcttagttt tacaatcata gaaaaaggcg ttctggttaa ttctatctat aattatccac
      841 gcaacatgag gttcttttca acctccgaca aacttgaaat tggcggtatt ccctttatta
      901 gtgcacaacc taaaccgaat cgagatgaag ctcttgctta ttacggacgc attggtgaaa
      961 aactaaaatc aaatctcgcc ctttacgaat cagtacaaag catacaaggc gtggatcaag
     1021 attatcacgt cattacagat aaacaagtcc actgtggacg aaaagtaatt ctcgctactg
     1081 gcttttacga tcttccgaaa atgctcaatg tcccgggtga actcagttcc aaagtacggc
     1141 attacttcag tgagggacat ccgtatgcgt ttaaaaacac catcgtcgtg ggcgcaagta
     1201 actcagccgt agacgcagct ttagaaatat ttcgcaaagg agggacggtc accatgatcg
     1261 tgcgcggggc gtccattgga gaacgcgtga aatattgggt taagcccgat atcgaaaatc
     1321 gcatcgccga aggaagtatt aaagcatatt ttaagagtca gatcaccgcg attcatcctg
     1381 accatgtcac cattaagacc ccggaaggag aaaaagtact agagaatgac tttgttctag
     1441 ccctgaccgg ctatcgaccg aatctcagct ttttaaaaga aaatggcatc accattgagg
     1501 aagaagaatt tcaaaaacca aaatacaatc ccgagaccat ggaatcgaat cgacccgggc
     1561 tttatttagc tggagtgatc tgcggggggt tacaaacaca tttatggttt atcgagaatt
     1621 ctagagttca cgccacccaa atcatagcgc atatacgaac caaaggataa tgcagtaaac
     1681 gctaacgagg gcctttcaaa accactgaaa aaaaggccaa ggatttaatc gacctttttg
     1741 tatattcgcc ccgaaaatta tgactaaaaa ataggcttaa taagtcannn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnctg agggttgggg gttcgaatcc tccctgggtc acatcaagca caaaaccacg
     1981 ccatcgggcg tggttctttg tttttcgaag aaaacacaaa ccgaaggtta tgggtttacg
     2041 cacaaaaaaa gcaagcccga gtggcttgct ttttttcatt ttgcacttgt cctgacagct
     2101 ttatttaatc gacattatcg tgcaaaaaac tattattgga acgcaaatca aggtcatcat
     2161 catcgagatt cactgtagtt ctagacaact ggtcctcctg agctttagca tcatctaact
     2221 caatacccat gcgcttatac gccggttgac gctcaatttc atcaatnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnggttgac gctcaatttc atcaatcttg gaggcgctat
     2401 ttctgaattt gtaattaaac tccttcatct tccgcttacg ctcctcggta cgttctctta
     2461 aaagttgagc aattggcgca ttaagcggat ctaaagaccc tggattttca gcaggggctt
     2521 cttcaggagc caccttagtt ttaagggtca tcgacgcttc aatagtggcc tcttggtcca
     2581 ctgcaacttc agtctcaatc gcggcttctt tttcatcttc aagcacatag cgaattgttc
     2641 cttgttccgc aggggcgtgc tctgcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnctcaa ttcttcataa acgagttcct cggcatgaac ttctatagcc aatatttcct
     2761 ctggggtttg ctgatttatc ggcaagtcaa acatcaacat ttgatcatca accgatttgt
     2821 tttcttcagc aaaattttca acgggtgcat ggtcttgctc tagggcctca tccacacaga
     2881 caatttcaaa atcatgaact tcgatctcat tgaccacgac ttgttgaaat tctgccaaaa
     2941 aattaatatc cacgtgttct gcttgaaccg gtatatttcg gattaactcc gtcgtgggaa
     3001 tataatcctc aaaaggggac tcaaacgctg cgttggccgg cacgttttct atactgtcgt
     3061 caggagatat ttcatcctgc aaggggcttt ggggattctc tttatccgta aaagactctg
     3121 aatcatcgtc ttcaaaaagc gtatgacgaa tcaccggggg ctcctgcgtc tttggtgaag
     3181 gacgcaaaga ctccacagag gcttctttaa taaccgtttg tttcggtaga ctatccgtac
     3241 ttagatcata ggcggcacgc tgttcctctt ctaaggtgtg aatgattttt tttgcctccg
     3301 tatgaacgat atgattctgt tgttccagat cgaagcccgt tgcgatcacg gtaatggcaa
     3361 tggcaccctg gagcgcctcg tcttcaccca cacccataat gatattggca ctatggcccg
     3421 cttcatcctg gatataatcg ctgatttcac cgatttcatc tatggtaatt tcttcagaac
     3481 cactgacaat cagaagcaat acatttttcg ctcctttgat tttgttatca tttagaaggg
     3541 gcgagtcgag tgattttgaa atggcttcct tggctctatt agacccaata gccatagcgc
     3601 ttcccatgat cgcggtgcca ctattggcca aaacagtctt ggcatcacgc aagtcaatgt
     3661 tttgcgtgta gtgatgggtt attacttcag caatcccacg ggcggc
//
LOCUS       DPUP01000177           12897 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_66,
            whole genome shotgun sequence.
ACCESSION   DPUP01000177 DPUP01000000
VERSION     DPUP01000177.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12897)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12897)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12897
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..951)
                     /locus_tag="DHV98_06635"
     CDS             complement(<1..951)
                     /locus_tag="DHV98_06635"
                     /inference="COORDINATES: protein motif:HMM:PF13715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06026.1"
                     /translation="MTKYFIFFLGLTSTVMFGQTYQIKGQVTEANQPLSFVTIVIAQE
                     PQTTNETTSSTFTGQIVAATISGDDGNFSIEDLPQGRYSLSAQILGFTPYQRVVTLGP
                     SLDLGPIELSPSQEQLQEVTITAKAPQITREPGRLVFRVAESTLSTTDPYQIITKTPG
                     VVVLNGQLTVKNRPTTIYLNNKKLYLEGSELKDFLEGLDAKLIESVEVITNPGANYDA
                     DATTVLNLRTTKKIAPGYKGSLRGMYRQGVFAKHQWTTTHLLSRDKHQWYLSYGVAPK
                     KENKDQETYIRYVSPLTEQTTNIWEGDFNRITDQLTQDRKS"
     gene            1084..2880
                     /locus_tag="DHV98_06640"
     CDS             1084..2880
                     /locus_tag="DHV98_06640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020212956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HCK06027.1"
                     /translation="MKQIRNFCIIAHIDHGKSTLADRLLEFTGSVTDREKQDQLLDNM
                     DLERERGITIKSHAIQMNYTHEGQAYVLNLIDTPGHVDFSYEVSRSIAACEGALLVVD
                     AAQSIQAQTISNLYLALGNDLEIIPVLNKIDLPSANPEEVTDDIVDLLGCAPEDIIPA
                     SAKTGLGIQEILTAIIERVPAPKGNPDESLQALIFDSVYNPFRGIETYFRVLNGAITK
                     GQQIKFMATGKTYFADEIGTLKLRQEPKPVIKTGDVGYLITGIKEAREVKVGDTITDA
                     KKPTTNMIAGFEDVKPMVFAGIYPVDTEDYEELRSSMEKLQLNDASLVFQPESSAALG
                     FGFRCGFLGMLHLEIIQERLEREFDMTVITTVPNVSYQAFTNRAPEEPILVNNPSDLP
                     DPSTLNRVEEPYIKASIITKADFVGAVMSLCIEKRGQITNQTYLTQDRVELSFDMPLA
                     EIVFDFYDRLKTVSKGYASFDYTPIGLRASKLVKVDVLLNNTTVDALSALLHQDNAYH
                     IGKKMCEKLRELIPRQQFDIPIQAAIGAKIIARETVKALRKDVTAKCYGGDISRKRKL
                     LEKQKKGKKRMRAVGNVEIPQEAFMAVLKLND"
     gene            complement(2907..4757)
                     /locus_tag="DHV98_06645"
     CDS             complement(2907..4757)
                     /locus_tag="DHV98_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell shape-determining protein"
                     /protein_id="HCK06028.1"
                     /translation="MVELAGIIVLGILAQWVAWKLKLPAILPLILIGLLVGPISTLFT
                     LDGTPYIQPIWDGTRGLFPGENLYYFVSLAIGIILFEGGLTLKRDEVSKVGPVIIKLI
                     SLGAVITFIGAGAAAHYLIGLNWQLSFLFAALIIVTGPTVISPILRNIPLKKDVSAVL
                     KWEGILIDPIGALAAVLVFEFIRIGGDAGYSKQALMEFGKIILIGGSFGISAGYILYF
                     SIKRQWIPHYLMNVVALSTVLLVFVQSDLFAHESGLLSVVVMGMFLGNSNLPNLKELL
                     YFKESLSVLLISILFILLSANIELSDLLLIYNWQTAALLGVIIFVLRPLSVLVSTAGS
                     SLKFNEKLFISWVGPRGIVAAGIASLFGSRLVQLGVPYAEYITPLVFSVVLVTVLLNA
                     TTARLFALLVGVFLKTSEGVLIVGASKVSRLIAAYLQKNGRHVVLLDSNQSNVSQAQS
                     LGLEAFLANIYTDDLSGNIELSDVGYLLALTASAEINQLAINKFAATFGETGTFRLMS
                     AEEKQKGLDLDNPEYFCSTHDYIMLDEVARQHPSIQEAPVEDMDQFMRLLKILSNNPD
                     TVPLFLKRANGYLEVICDPKNFEVGPDSSLVYLGKPQDLEELSRAVKKKS"
     gene            4993..5862
                     /locus_tag="DHV98_06650"
     CDS             4993..5862
                     /locus_tag="DHV98_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HCK06029.1"
                     /translation="MTLYPIDAGNFKLDGGAMFGVVPKSLWQRTNPADNNNMIDIAAR
                     CLLIEQGDRLVLIDNGMGDKQGPEFFKHYYPWGGATLDRSLKQYGFSPEDITDVFLTH
                     LHFDHCGGGVCWNKDRDGYQTKFSNAHYWSNQDHWQWATAPNRREKASFLKENILPIE
                     ASGQLNFIERSSNDYAENTPLGFGVLFVDGHTEKQMIPHLNYKGKTLVFTADLLPTAG
                     HIPLPYVMGYDTRPLKTLSEKEKFLNLAADHGYFLWLEHDAHNPIITVKHTEKGVRLD
                     KVYTLDQFLNQSI"
     gene            5859..7529
                     /locus_tag="DHV98_06655"
     CDS             5859..7529
                     /locus_tag="DHV98_06655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S8"
                     /protein_id="HCK06030.1"
                     /translation="MKTPKNIFIAFIPALILSACGPARFDANPVAAPSSAVSKTLELT
                     EEQTQAWGASDLAMDTIAGMSVDKAYAELLSQRKGSAVIVGVIDSGVDIEHEDLKNVI
                     WVNDDEIPGNGIDDDRNGYVDDIHGWNFLGNIVKENLEYVRIIRELGPEFEGKEAGDI
                     APERAADYALFNKAKAAYEKDYADAAQNKMRYQGMYDQLTIAHALVTEKLGTDEYGKE
                     DLAGLTDLTQEEQGLVERLGQMMAFGPTIPAVLNRLNGGVEYFTNRLESHFNLSTDYR
                     AADLGDDANDWSSKYYGNNDVDGPDPKKEDARHGTHVAGIIAAERNNGIGMNGVADHA
                     KIMVVRAVPDGDEYDKDVALAIRYCVNNGAKVLNTSFGKGFSPHPEWVWDAIRYASDN
                     DVLIVNAAGNDGMDLDQNEVYPNDVRPGETEEIGNTFITIGASTPEFNEGLVAGFSNY
                     GEENVDVFSPGTQIWSTTPLNTYEYLQGTSMAAPAVAGVAAVIRSYFPKLSAAQVKQI
                     LMDSGLAGPGEVILGGDPNTKNNFANISKSGHLVNLYNALIMADQMSR"
     gene            7562..9361
                     /locus_tag="DHV98_06660"
     CDS             7562..9361
                     /locus_tag="DHV98_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015362011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M1"
                     /protein_id="HCK06031.1"
                     /translation="MKLVFSIFLAACSVVSSQNSFNYWQQHVDYTMSVDMDVTNWQYT
                     GNQKLVYTNHSPDTLHQVFYHMYFNAFQPGSEMDVRSRTIADPDRRVGDRIAGLSPSE
                     QGFLNATALKQDGVTLDYSAEETILVVRLNTPLAPHESTVLTMDFHGQVPVQIRRSGR
                     NNAEGVALSMTQWYPKLAEYDKDGWHTDPYIAREFYGVWGDFKVSLTLDSGYVVGGTG
                     YLKEKSASKKGRTRWIFEAPMVHDFTWAADPDYVHDTYPGPDGVTLNFYYKNDPALQE
                     NWKALQPVTAELLDYFNKAIGPYPYKQYSVIQGGDGGMEYAMCTLITGKRSFESLVGV
                     TAHEMAHTWFQFLLASNEALHEWMDEGFTSYISSLAEHQVLHQEGDPLAGSYRGYNFL
                     ATSGVEQPLSTHADRYNTNRNYGIAAYSKGAVFLAQLGYVVGEEVLAQTLKEYFKTWA
                     FKHPEPRDFIRVAERVSGLNLDWYLQDFATTTNTIDYGIVSVGPSATTEQKIALERIG
                     LMPMPIDLQVNFADGSSRLYYIPLQMMRGEKSFGDTPVTVLRDWAWARPSYSFNVDSP
                     SEIVEVIIDPSGRMADIQKENNRFEKAGSDKGQ"
     gene            9405..9779
                     /gene="rnpA"
                     /locus_tag="DHV98_06665"
     CDS             9405..9779
                     /gene="rnpA"
                     /locus_tag="DHV98_06665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00188"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HCK06032.1"
                     /translation="MTHGLPKDERLKGRHWFGVLFQQGQSIKRFPLKLVHTPVTDTPH
                     NLFGVSVPKRNVPKAVNRNRIKRQIREAYRLNKSLAGTQEFGALFFIYQGRESLPYAR
                     IEQAVKDLLMRYAQTKKVVDEA"
     gene            9745..11439
                     /locus_tag="DHV98_06670"
     CDS             9745..11439
                     /locus_tag="DHV98_06670"
                     /inference="COORDINATES: protein motif:HMM:TIGR00225"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S41"
                     /protein_id="HCK06033.1"
                     /translation="MLKQKKLWMKLNFSFLSRSPLLRKAWRLILILPLALGLLVLTSA
                     RGGLFEITKQLEIFTTLFKELSLNYVDETSPAQLMDHAITGLLEGLDPYTVFWTEQEV
                     SDARISKESNFASLGAGFRQFDHQWLVVEVDQNSPADQAGLRVGDQLHAINGVALAQD
                     LDQLSQLVAASGDRAVTLEYTRENQTKKIELTPDKKAETPVLSAKLLQDKVGYIALKE
                     FSPTIYKDTKKALFELKSSGATALILDLRNNPGGLLTEAVNLVSLFVPKGTLVTYTQS
                     VVPEYNNTYVTQQLPADLEMPLVVLINARSASASEIVSGALQDLDRAVIIGGRSFGKG
                     LVQRPKPLSYGTQLKVTISRYYTPSGRCIQALDYWQRDADGEPIRTEPDQYNAFKTAR
                     GRTVYDGGGILPDKVFESSSDHTLLSSLLKSRIMIDYGTEFIKTHPFERLENFQFTQK
                     DFEGFLDFVAAHPETIKTVSEGVFNEFTQAAEKEGLAPYVDQALESMRNNLLAAKIDL
                     LKSKQAAVQTLVVESLLPRYFYRSGLYSYKTSHDPEIIAGVDMLKNPKAYAKILKP"
     gene            11436..12275
                     /locus_tag="DHV98_06675"
     CDS             11436..12275
                     /locus_tag="DHV98_06675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase"
                     /protein_id="HCK06034.1"
                     /translation="MSAFLLFFEQMPVWQKLGWVIFCIAVFWLLEGYYRDVNNPYDKT
                     RHAKTNFGLLSLVMVINVVFGVLTAGVFIWLNQSNFGLLNYVTAPVWVELALSIMVLD
                     LIAQYGVHYLLHKVPWMWRLHMVHHSDKYVDVTTGTRHHPFDFVLREVFALIAVVIMG
                     MPVSFYLFYRILSVLFTYWTHANIALPLSVDKALSYLIVTPGVHKFHHHRSMPWTDKN
                     FGNILSVWDRLFGTFVYGDRKEIIFGVDRADHLNDQSFLTQLGLPFSSKVKPLSQDKH
                     NKG"
     gene            complement(12326..12897)
                     /locus_tag="DHV98_06680"
                     /pseudo
     CDS             complement(12326..12897)
                     /locus_tag="DHV98_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012499246.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ammonia channel protein"
     assembly_gap    12701..12726
                     /estimated_length=26
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         3574 a         2848 c         2944 g         3505 t
ORIGIN      
        1 gctcttccga tcttgggtca attgatcggt tattcgattg aaatcgccct cccaaatatt
       61 cgtggtttgc tcggttaaag gagacacata tcgaatatag gtctcctgat ccttattttc
      121 tttttttggg gcaacaccat aactcaaata ccattggtgt ttgtctcggc tcaataaatg
      181 agtggtggtc cattggtgtt ttgcaaagac cccttgacga tacattccgc gcagactgcc
      241 tttgtatcct ggcgcaattt ttttagtggt tcttagatta agcactgtgg tggcatcggc
      301 atcataattt gcccccggat tagtgatgac ctctaccgat tcaatcagtt tggcgtcgag
      361 accctccaaa aaatctttga gttcactgcc ttccaaatac agttttttgt tgtttaggta
      421 aatcgtggtc ggtctatttt ttacagtaag ttgtccgtta agcacaacca ctcctggagt
      481 ttttgtaatg atctgataag ggtccgtcgt ggacaaggtg gactctgcta cgcggaatac
      541 aagccgccct ggttcacggg taatttgtgg cgccttagcg gttatggtaa cttcttgtaa
      601 ttgttcttga gaggggctga gttctattgg gcctaagtcc aatgaggggc ccagggtcac
      661 aacacgctga taaggggtga atcccaaaat ttgtgcgctc aaactatagc gaccttgagg
      721 taaatcttca atagaaaaat ttccgtcatc tccactgatg gttgcggcca ctatttgtcc
      781 tgtaaatgtg ctggaggttg tttcgtttgt ggtctgtggc tcttgagcaa tcacaatggt
      841 cacaaaggac aaaggctggt ttgcctcagt aacctgaccc tttatttgat aagtctggcc
      901 gaacattacc gttgaggtta ggccaagaaa aaagataaaa tatttggtca ttattcgctg
      961 tattcaaatt aaaataacaa aaaataaatc acatgcccca ccacggcatg ccgctaaaga
     1021 tgtttttagt ctatatttgc agcgcatttg cgccacaagc tatttggcgt atttgctttg
     1081 gctatgaagc agatcagaaa cttttgtatt atcgcccata ttgaccatgg taaaagcacc
     1141 ctggcggacc gtttattgga gttcacgggc tcggttactg atcgcgaaaa acaagatcag
     1201 ctgttagaca atatggattt ggagcgtgag cgcgggatta ccatcaagag tcacgcgatt
     1261 caaatgaatt acacgcacga aggtcaagcg tatgtcttaa acttgattga caccccgggg
     1321 cacgtcgatt tctcttatga agtttcccgt tctattgcgg cttgcgaagg cgcccttttg
     1381 gtggttgatg ccgcccaaag catccaagcg cagaccatct caaatttata tctagcccta
     1441 ggaaacgacc tggaaatcat ccctgtttta aacaaaattg atttgccctc ggcaaaccca
     1501 gaggaggtta cagacgatat cgttgattta ttaggttgtg ctccagaaga cattattccc
     1561 gccagtgcta aaacaggttt agggattcaa gaaattttaa ccgccattat cgagcgtgtt
     1621 cctgcgccta agggcaaccc agacgagtca cttcaggcct tgatttttga ttcggtatac
     1681 aatccttttc gcggaattga aacttatttt cgcgtcttaa acggggcgat taccaaaggc
     1741 caacaaatta agtttatggc cacaggcaaa acttattttg ccgatgaaat tggcacctta
     1801 aaattacgtc aagaacccaa gcctgtgatc aaaactggag atgtgggtta cttgattacc
     1861 ggaataaaag aggccagaga agtaaaggtt ggggatacca ttaccgacgc caaaaaaccc
     1921 actaccaata tgatcgctgg ttttgaggat gtaaaaccca tggtttttgc gggtatttat
     1981 cctgtagaca ccgaagacta cgaagaattg cgtagttcta tggaaaaatt gcagctcaac
     2041 gatgcgagtt tggtgttcca accagagagc tctgcggcct tagggtttgg gttccgttgt
     2101 ggatttttgg ggatgctaca cttagaaatt attcaagaac gactcgagcg agagttcgac
     2161 atgacggtga ttaccactgt gccgaacgtt tcttaccaag cttttaccaa tagagcccct
     2221 gaggagccta ttttggtaaa caatccaagt gatttacctg atccctctac actgaatcgt
     2281 gttgaagagc cttatatcaa agccagcatc atcaccaaag ctgattttgt cggcgctgtt
     2341 atgtctttat gtattgagaa gcgggggcaa atcaccaatc aaacctattt aacgcaagac
     2401 cgtgtagaac tcagttttga catgcctttg gctgaaattg tttttgattt ttacgatcgc
     2461 ctaaagaccg tttccaaagg gtatgcttcc tttgactata ccccgattgg tttgcgcgcc
     2521 tcaaaactgg tcaaagttga tgttttgtta aacaacacaa cggtcgatgc tctttcggcg
     2581 cttttacacc aagacaacgc ctaccatatc ggtaaaaaaa tgtgtgagaa acttcgtgag
     2641 ttgatcccgc gtcaacaatt tgatattccg attcaggccg ctatcggagc aaaaattatt
     2701 gccagagaaa cggtaaaagc cctgaggaaa gacgttacag caaagtgtta tggaggagat
     2761 atttccagaa agagaaagct ccttgaaaaa cagaaaaaag ggaaaaagcg catgcgcgct
     2821 gtcggcaatg tagagatccc tcaagaggcg tttatggcgg tacttaaact aaacgactag
     2881 cctttttatc ccccctccct taagccttac gatttctttt taaccgcacg actcagttct
     2941 tctaagtctt gaggcttgcc caggtaaact aaggatgaat ccgggcccac ttcaaagttt
     3001 tttgggtcgc aaataacctc aaggtagcca ttggctcgtt ttaaaaacaa gggcactgta
     3061 tctgggttat tgctcagtat ttttaaaagg cgcataaatt ggtccatatc ctccacgggc
     3121 gcttcttgaa tagaggggtg ttggcgggcc acttcgtcca gcatgatgta gtcatgggta
     3181 ctgcagaaat actccggatt atccaggtct aagccttttt gtttttcttc agcagacatc
     3241 aaacggaatg tcccggtctc cccaaaagtg gccgcaaatt tattgatggc cagctgattg
     3301 atttctgcgc tcgccgtgag ggctaataaa tacccaacat cactgagctc gatgtttcca
     3361 ctgagatcat cggtgtatat attggctaaa aacgcctcaa ggcctaggct ttgcgcttgt
     3421 gagacattgg attgattgga gtccaaaaga acgacatgtc ttccattttt ctgaaggtag
     3481 gcggcgatta atcgcgagac ctttgaggcg ccgacaataa ggaccccttc agaggttttt
     3541 aaaaagaccc cgactaacaa ggcgaataaa cgcgctgtag tcgcattgag caatacagtc
     3601 accaacacca cagaaaacac aaggggggtg atgtactctg cgtagggcac tccgagttgg
     3661 accagtcgcg atccaaacag tgaggcgatc cccgcggcaa caatccctcg tgggcccacc
     3721 caactgataa atagtttttc attaaatttt aaagaggagc ctgctgtact caccaagacc
     3781 gataacgggc gtaacacaaa aataatgacg ccaagcaagg ctgctgtttg ccagttataa
     3841 atcaataaaa gatccgatag ctcgatattg gccgaaagca aaataaagag tattgaaatc
     3901 agaagaacac tgagtgattc tttaaaatac aacagctctt ttaggttggg taaattgctg
     3961 ttgcccaaaa acattcccat caccactaca gagagcaagc ccgattcatg agcaaacaaa
     4021 tcactttgga caaagaccaa aagcaccgtg gacagcgcca ccacattcat aaggtaatgg
     4081 gggatccatt ggcgtttgat ggaaaaatat aaaatatagc cggcagagat cccaaacgac
     4141 cctccgatga gaataatttt accaaactcc atcagcgctt gtttggaata gccagcatct
     4201 cccccaatac ggataaattc aaataccaaa acagccgcca aggccccaat tggatcaatt
     4261 aaaatccctt cccacttcaa aactgcagaa acatcttttt ttaaggggat gttgcgcagt
     4321 atggggctga tcactgttgg cccggtaaca ataatcaaag cagcaaacaa aaaggagagc
     4381 tgccaattta acccgataag ataatgtgct gcagcgccgg ctccgataaa ggtaattacc
     4441 gctcctaaac tgatgagttt tatgatcact gggcccactt tggacacctc gtcgcgcttt
     4501 aacgtcaacc caccttcaaa aaggataatg ccaatggcca aagacacaaa gtagtataag
     4561 ttttctcctg gaaataatcc tcgggtccca tcccaaatcg gttggatata aggggtgcca
     4621 tctaaagtaa ataaggtaga gattggtccg accaacaggc caattaaaat caatggcagg
     4681 attgcaggaa gttttagctt ccacgcaacc cattgggcta aaattcctaa tacgattatg
     4741 cctgcgagtt caaccatgat ttaatataat gccctaaaat acgagaaagt ttttacttcc
     4801 ttggcacaag gccctattat gcttttgtga aatatagttt tgttgtagtt ttgttttagg
     4861 tgggctcaat accttaggat tctcggggtt gactgataat tttctgttaa aaaactcaaa
     4921 ttaaaccggc gcatcaaagg ctattgttta cccttttgtt aatttgcacg ttcgggactt
     4981 tatccacaac gaatgacctt atacccaatt gatgctggaa actttaagct tgatggtggc
     5041 gctatgtttg gtgttgtccc aaaaagcctc tggcaaagaa caaatcccgc cgataataat
     5101 aacatgattg atattgcggc gcgctgttta ctcatagagc aaggcgaccg cctcgttttg
     5161 attgacaatg gtatggggga caaacaaggg ccagaatttt tcaaacatta ttatccctgg
     5221 ggcggagcga ctttagaccg ttctttaaaa caatatggct ttagcccaga agacataacc
     5281 gatgtgtttt taacgcatct tcattttgat cattgcggag gaggtgtttg ttggaacaaa
     5341 gaccgtgatg ggtatcaaac caagttttct aacgcgcatt attggagcaa tcaagatcat
     5401 tggcaatggg ccaccgcgcc taatcgtcga gaaaaagctt cttttttaaa ggaaaatatt
     5461 ttgcccattg aagcgtctgg tcagctcaac tttattgagc gctcatcgaa cgattacgcc
     5521 gagaacacgc ctttggggtt tggtgtttta tttgttgacg ggcacaccga aaaacaaatg
     5581 attccccacc tcaattataa agggaaaacc ctggttttta cggcagatct tttgcctact
     5641 gctggtcata ttccactgcc ttatgtcatg ggatatgaca cgcggccact taaaacactg
     5701 agcgaaaagg aaaaattttt aaatttagct gcggatcacg ggtatttttt atggctagaa
     5761 cacgatgccc acaatcctat aattaccgtc aaacatacag aaaaaggggt gcgcctggat
     5821 aaggtctaca ccctcgacca atttttaaac caatccatat gaaaacacca aaaaacattt
     5881 ttattgcctt tatccccgcg ttaatcttga gcgcctgtgg gcccgctcgt tttgacgcca
     5941 atcctgttgc cgctcccagc agtgcggtga gcaaaaccct agagcttacc gaagagcaaa
     6001 cccaggcgtg gggcgcttca gatctagcaa tggataccat tgcgggaatg agtgtggata
     6061 aagcctatgc tgagctatta agtcagcgta aaggaagcgc tgtaattgtc ggggttattg
     6121 acagtggtgt cgatattgaa cacgaagacc taaaaaatgt gatttgggtc aacgacgatg
     6181 aaatccctgg caacggtatt gatgacgacc gaaatggtta tgtcgatgac atccatggat
     6241 ggaattttct tggcaatatt gtcaaagaaa acctagagta tgtccgtatt atccgtgaac
     6301 taggccctga attcgaggga aaagaagctg gggatattgc cccagagcgt gccgcggatt
     6361 atgcgctgtt caataaagcc aaagcggctt acgaaaaaga ttacgctgat gcggcacaaa
     6421 acaaaatgcg ctatcaaggc atgtatgatc aactcaccat tgcccatgct ttggtcacag
     6481 aaaaattagg gacggacgaa tatggaaagg aagacctagc gggcttaacc gatcttactc
     6541 aggaagagca agggcttgta gagcgtttag gtcaaatgat ggcttttgga ccaactattc
     6601 cagcggtatt aaatcgttta aacggagggg ttgaatattt cactaaccgc ttagagagcc
     6661 attttaacct ttctacagat tatcgcgccg ctgatctagg agatgacgcc aatgattggt
     6721 cctcaaagta ttacggaaac aacgatgttg atggaccaga tcctaaaaaa gaagacgccc
     6781 gtcacggaac ccacgtcgca ggaattatcg ccgctgagcg caacaacgga atcggaatga
     6841 atggggttgc tgaccatgca aaaataatgg ttgtgcgcgc tgttcctgac ggagatgagt
     6901 acgataaaga cgtcgcttta gcgattcgtt attgtgtaaa caatggggct aaagttctta
     6961 acacaagctt tggtaagggc ttttctccac acccagagtg ggtttgggac gcgatccgtt
     7021 acgcttctga caatgatgtt ttgattgtaa acgctgcggg taacgacggc atggatttag
     7081 accaaaacga ggtgtatccg aatgacgtac gcccaggaga aaccgaggaa atcggcaaca
     7141 cttttatcac cattggggcc tcaacaccag agttcaatga aggtttggtt gctggatttt
     7201 caaactatgg agaagaaaat gtagatgtct tttctccagg aactcaaatt tggtcaacga
     7261 ctcccttaaa cacttatgaa tacctgcaag gaacctctat ggcggcccct gctgtggctg
     7321 gtgttgcggc ggtcattcgt tcgtatttcc ctaaactaag tgctgctcag gtgaagcaaa
     7381 tcttaatgga tagtggacta gcgggacccg gtgaggtgat tcttggtggt gatccaaata
     7441 cgaaaaacaa ttttgcaaac atttctaaat caggtcacct ggtcaatctg tacaacgcgt
     7501 tgattatggc cgaccaaatg tcgcgttaaa caaatcacgt caatcaaata atgacctttt
     7561 aatgaaatta gtcttttcaa tttttttggc tgcttgctct gtagtaagca gccaaaattc
     7621 ttttaactat tggcaacaac acgtggacta caccatgagt gtcgatatgg atgtcactaa
     7681 ttggcagtat acaggaaatc aaaaacttgt ttatacaaac cattcaccgg acacattaca
     7741 tcaagtgttt taccacatgt acttcaatgc ctttcagccc ggcagcgaaa tggatgtgcg
     7801 ctcacgaact attgccgatc ctgaccgtcg tgtgggtgat cgcatcgcgg gtcttagtcc
     7861 ttccgagcaa ggttttttga acgctaccgc gctcaaacaa gatggcgtga cgcttgatta
     7921 ttcagcggaa gaaactattt tggttgtccg gttaaacacg cccttggctc ctcatgaaag
     7981 cacggttttg actatggatt ttcacggtca agtgccggta cagattcgac gaagtggccg
     8041 caacaatgcc gaaggggtcg cgctttccat gacccagtgg tatcccaaac tcgctgaata
     8101 cgacaaagac ggatggcata ccgaccctta tattgcccgc gaattttatg gggtttgggg
     8161 tgattttaag gtgagcctaa ctttagacag cggttatgtt gtcgggggta cgggttatct
     8221 caaagaaaag tctgcttcaa aaaaaggacg cacgcgatgg attttcgagg cgcctatggt
     8281 tcacgatttt acttgggcgg ccgatccgga ttatgtacac gatacttacc caggcccaga
     8341 tggcgttaca ctaaacttct attacaaaaa cgaccccgca ttgcaagaga attggaaggc
     8401 cctccagccg gttaccgccg agcttctaga ttatttcaac aaagccattg gcccatatcc
     8461 ttacaagcaa tattctgtga tacaaggagg cgatgggggc atggaatatg ccatgtgtac
     8521 cttgattacc gggaagcgca gctttgaaag tttagttggc gtgaccgcgc atgagatggc
     8581 ccatacctgg tttcagtttt tactggccag caatgaagcc ctgcacgaat ggatggatga
     8641 agggtttacc tcttacatct cttctttagc ggaacaccag gtgctccacc aagaaggcga
     8701 ccctttagcg ggctcctatc gcggttataa tttcttagcc acttccgggg tggagcagcc
     8761 tttgagcacc catgcagatc gatataacac caaccgcaat tacggaattg ccgcctattc
     8821 caaaggcgct gtgtttttag cccagctggg ttatgtggtc ggcgaggagg ttttagctca
     8881 aacccttaaa gaatatttca aaacctgggc cttcaaacac ccggagcctc gtgattttat
     8941 tcgcgttgct gagcgcgtct ctggcctgaa tttagattgg tatttacaag actttgccac
     9001 aaccacaaac accatcgatt acgggattgt ctctgtgggt ccgagcgcca caactgaaca
     9061 aaaaatcgcc ttagagcgca tcggtctaat gcctatgcct attgaccttc aggtcaattt
     9121 tgccgacggc agcagtcgct tgtactatat cccgctacaa atgatgcgtg gtgaaaaaag
     9181 cttcggggac accccagtaa ctgttctgcg cgactgggca tgggcaagac caagctacag
     9241 ctttaatgtc gatagcccct cagagattgt tgaggtaatt atcgacccca gtgggcggat
     9301 ggccgacatt caaaaagaga ataatcgttt tgaaaaagcc ggatccgata aaggccaata
     9361 attaatcggt gtgttttgta agacgcgttg tgtatcttta ggccatgact catggtttgc
     9421 caaaagacga acgactcaaa ggacggcatt ggtttggtgt tttgtttcag caaggacaaa
     9481 gcataaagcg ttttccgctt aagttagtgc atacgcctgt tacggatacg ccccataatt
     9541 tatttggcgt ttctgtgcct aagcgcaatg ttcctaaggc agtaaaccgc aatagaatta
     9601 aacgacaaat tcgcgaagcc tatcggttaa ataagtcctt agcgggaacc caagagtttg
     9661 gcgctttatt ctttatttat caagggcgcg aatcgttgcc ttatgcgcgt attgagcaag
     9721 cggtaaaaga cctgctcatg cgttatgctc aaacaaaaaa agttgtggat gaagcttaat
     9781 ttttcatttt tgtcacggag tccccttttg cgcaaagcct ggcgactcat tttaattttg
     9841 ccattagcct tggggttatt ggtcttaacc agtgcccgcg gtgggctttt tgaaattacc
     9901 aagcagcttg agattttcac caccttattt aaggagttgt cgctaaacta tgtggatgaa
     9961 acctccccgg ctcagcttat ggatcacgcc attacgggtc ttcttgaagg cttagatcct
    10021 tatacggtct tttggacaga acaagaggtt tcagatgctc ggatctccaa agaaagtaac
    10081 tttgcttcct taggggcggg atttagacag tttgaccatc agtggttggt ggtagaagta
    10141 gaccaaaaca gtcccgcaga ccaagcaggg cttcgtgtgg gcgatcagtt acacgccatt
    10201 aatggggttg ctttagctca agatttagat cagttgtccc aattggttgc cgcaagtgga
    10261 gatcgcgcgg tgaccttgga gtatacccgt gagaaccaga ccaaaaaaat cgagttaact
    10321 ccagacaaaa aagccgaaac cccagttttg agcgcaaaac ttcttcagga taaggttgga
    10381 tatatcgcgc taaaagaatt cagcccgacc atatataaag acacgaaaaa ggctttattt
    10441 gaattaaaat cctcaggagc tacggcgctt attttagatt tgcgcaacaa ccctggtggg
    10501 ttgcttaccg aagcggttaa tttagtgagt ttatttgtac ccaaaggcac tttggtgact
    10561 tatactcaat ccgtagtccc ggaatataac aacacctatg tgacccaaca attaccggct
    10621 gacctcgaaa tgcccttggt ggttttgatc aacgcgcgta gcgcgtcggc cagtgaaatt
    10681 gtttctgggg cgcttcaaga tttggatcgt gcagtaatta tcggggggcg cagctttgga
    10741 aagggtttgg tgcaaagacc taagcctttg agctatggca cgcagctcaa agtgaccata
    10801 tctcgatatt acaccccaag cgggcgctgt attcaggctt tagattattg gcagcgtgat
    10861 gcggacggcg agcctattcg gacagaacca gatcaataca acgcatttaa aacagcacgt
    10921 ggccgcacgg tttatgatgg cgggggcatc cttcctgata aggtttttga aagttcgagc
    10981 gaccacacct tgttgtcttc attgctcaaa tcgcgcatca tgatcgatta tggcaccgaa
    11041 ttcataaaaa cacatccttt tgagcgccta gaaaattttc agtttaccca aaaagatttt
    11101 gaggggtttt tggattttgt tgcggcccat ccggaaacga taaaaacagt ttctgagggg
    11161 gtttttaatg aatttaccca agcagcagaa aaggagggct tggcccctta tgttgaccag
    11221 gctcttgagt ccatgcgtaa caacctgctt gcggccaaaa tcgacctttt aaaatcaaaa
    11281 caagctgccg ttcagacctt ggtggtggaa tctcttttac cccgctactt ttaccgatcg
    11341 ggcctgtata gctacaaaac cagccatgac cctgaaataa ttgcgggcgt cgatatgctt
    11401 aaaaatccta aagcttatgc taaaatatta aaaccatgag cgcgtttctt ttgtttttcg
    11461 agcagatgcc tgtgtggcaa aaattaggtt gggtcatctt ctgtattgct gttttttggc
    11521 tgctcgaggg ctattaccgc gatgtgaaca atccttatga taaaacacgt catgccaaaa
    11581 cgaactttgg gcttttgtct cttgtaatgg tgatcaatgt cgtctttggt gtgcttactg
    11641 ctggggtgtt tatttggctg aatcaatcaa attttggact gctcaattac gttacggcac
    11701 ctgtttgggt tgaattggct ttatccataa tggtactcga tttaattgcc caatacggtg
    11761 tacactacct cttgcataag gtgccctgga tgtggcgtct tcatatggtg caccactcag
    11821 acaaatatgt tgatgtcacc acgggaaccc gtcatcatcc ttttgatttt gtactgcgcg
    11881 aagtgtttgc actaatcgct gtggtgatta tgggaatgcc ggtttctttt tatctttttt
    11941 accgaatttt gagcgtgctc tttacttatt ggacgcacgc caacattgct ttgccgctaa
    12001 gcgtggacaa ggcgttgagt taccttattg ttactccggg ggttcacaaa tttcatcacc
    12061 accgcagcat gccttggacc gataaaaatt ttggcaatat cctttcggtt tgggatcgtc
    12121 tttttggcac gtttgtttac ggagaccgca aggaaattat ttttggtgta gatcgtgccg
    12181 atcacttaaa cgaccaaagc tttttaaccc agctggggct tccgtttagt tcaaaagtaa
    12241 aacctctgtc tcaagacaag cacaataaag gttaaggtat aatcacctca gagaagaaca
    12301 attacaaaaa tgcttgtttt tagtattact cttcgaggaa ttctccgtgc tgcgaggcat
    12361 ccaatccgcg gaattcttgg tcttcccgca cacgcatgga caaaagcacg tcggtgattt
    12421 tataaagcgc ataactgcct acaaaagtaa acacagcaac caagaccagt gcaattacgt
    12481 ggttaataaa agtggtggtc tctccataaa tcagccccac atcttctgct aaaaccgctg
    12541 ttaagatcat ccccacgatc ccgcccactc cgtggcttgg aaaaacatcc aaagtatcgt
    12601 caatttctga ttttttattg agtcttatcg caaaattgct cacgattgat gcgacaaaac
    12661 cgataaaaat actcgcgcct agactcacaa aaccggctgc nnnnnnnnnn nnnnnnnnnn
    12721 nnnnnnaatg cagacatttt tctattttga aaacgctcta agaaaatcca tgtaagcata
    12781 ctggtggctg aggctaaatt tgtgttcgca aaggcaataa cggcatctgt atttgcgcct
    12841 aaagccgagc ctgaattaaa gccaaaccag ccaaaccaca aaagcccggt tcctaat
//
LOCUS       DPUP01000178           15575 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8210,
            whole genome shotgun sequence.
ACCESSION   DPUP01000178 DPUP01000000
VERSION     DPUP01000178.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 15575)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 15575)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15575
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1338)
                     /locus_tag="DHV98_06685"
     CDS             complement(<1..1338)
                     /locus_tag="DHV98_06685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012026834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HCK06035.1"
                     /translation="MNLNTFSIPEQYIPSQVKLDKYLCDGEIITWTGAMTSVYSTIET
                     KDAQGNMGPTYLGQVSAMDEASALEAIRSSVKAFDRGMGEWPTMRVTDRIKCMEDFAA
                     KMVTKRDEVVKLLMWEIGKNYKDSQKEFDRTVDYIYDTIEACKDFDRKGARFLNDSDV
                     RAHIRRGPLGIVLCLGPYNYPLNETFSLLIPAIIMGNTTIFKPAKLGVLLIGPLLEAF
                     ATSFPKGVVNILFGRGRELASPIMKSGHIDVLALIGHSSSAIALQDLHPNKNRLRLVL
                     GLEAKNPGIILPSADLQNAVSECISGTLSFNGQRCTALKILYVHKTIKDQFLSAFSDA
                     VDALQLGMPWENTLLTPLPEPHKPDYIQSLIDDALGKGAKIINKRGGERSSNFIFPAV
                     LYPVTKEMKIYHEEQFGPVIPVRDFEDIHLPLDDMAESNYGQQVSVFGTDAQEL"
     gene            1559..2209
                     /locus_tag="DHV98_06690"
     CDS             1559..2209
                     /locus_tag="DHV98_06690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06036.1"
                     /translation="MKTLLTFLALCITLGAHSQKSTIRTNIPSADIFIDGKLVGQGEV
                     GGIKIPRNECITVQVSATGYLSQTKEYCKIKGMPQIEKTEYIELGVDDSFEASVQSDF
                     ANNDIIINPKNKDVEEVWKNAFRLISNYFDAMEVNDTEVYYLRTSWVVATFKGYTIRT
                     RVIYRLTRENPLEFSIKVVSERAEGQASPKDDEKYKPWTRILKRYAALIEEVQQRS"
     gene            2362..2643
                     /locus_tag="DHV98_06695"
     CDS             2362..2643
                     /locus_tag="DHV98_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06037.1"
                     /translation="MFNAYKFKFYHPLLLLVFPLIGTLLSPQVNWTWFDYLVMGGLLL
                     SLGIGAHFILKRFNKSAKKWTYLFALILVFMLIWAELAVGIFGSPLAGS"
     gene            complement(2629..3375)
                     /locus_tag="DHV98_06700"
     CDS             complement(2629..3375)
                     /locus_tag="DHV98_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009538778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HCK06038.1"
                     /translation="MTNPYIAEFIGTAILLLLGMGVVANVNLKKTIGSGQTPWVLITS
                     AWGFAVFVAVFITGQFSGAHLNPAVTLGLAVAGKFAWQMAAGYILAQVLGAMAGSWLA
                     YILYIDHYRATEDVDAVRSTFCTGPAVRNYKNNLFSEAIGTFMLVFGVLFIAGPSMSI
                     DGAEVTNFGIGSLDALPVGILVWVIGMGLGGTTGYAINPARDFGPRLVHHLIPMRQKN
                     SDWPYAWIPVLGPFIGGAVAGVLYLLLTAS"
     gene            complement(3372..3650)
                     /locus_tag="DHV98_06705"
     CDS             complement(3372..3650)
                     /locus_tag="DHV98_06705"
                     /inference="COORDINATES: protein motif:HMM:PF16901.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06039.1"
                     /translation="MLNQGPEIHNKSLSDKYYISKNQILYGIRQEMAMRLEDIVARRV
                     RGMFLDAKETRRLLPEIAQIMAEELKKDSDWVKNEINQTKKILNTYTL"
     gene            complement(3695..4174)
                     /locus_tag="DHV98_06710"
     CDS             complement(3695..4174)
                     /locus_tag="DHV98_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004511387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06040.1"
                     /translation="MRRSVHIERVKSRSQWDVVIIGGGASGLGIAVDAANRGYRTLLL
                     ERHDFAKGTSSRSTKLVHGGVRYLQNGDVSLVIEALKERGIMKQNAPHLVRDMSFVIP
                     IYSWWNGPFYSVGLKIYDMMAGDLGLGKSQWLSKEETRAMIQNVKPESLNSLAMSRD"
     gene            complement(4251..5729)
                     /gene="glpK"
                     /locus_tag="DHV98_06715"
     CDS             complement(4251..5729)
                     /gene="glpK"
                     /locus_tag="DHV98_06715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008865640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase"
                     /protein_id="HCK06041.1"
                     /translation="MPQYILSIDAGTTSSRAIIFDQQGNQLALAQYEFTQIFPQKAWV
                     EHDALEIWETQLKAIKEVIKKAKLDPQDIACIGITNQRETTVIWDRKTGIPVYKAIVW
                     QDRRTAAYCQDLSAAGHAPTFLNKTGLVIDAYFSGTKVKWILDSDPDLRRRAEQGELA
                     FGTIDSWLIWQLTGGAIHITDVTNASRTLMYNIHELCWDQQLLSILKVPELLLPEVKS
                     SSEVVGHTNEQILGASIPIAGVAGDQQSALFGQLCLEPGTVKNTYGTGCFCIMNTGNK
                     PVVSKNKMLTTIAWQIDGKVTYAIEGSVFTAGALVQWLRDQLHMIEKSADIEDLAASV
                     THSDGVTFIPALSGLGAPYWDPYATGTIFGITRGTSKGHIARAALEAIALRSRDIILE
                     MQKDAGVDFKTLKVDGGASNNDLLMQIQADVLGAEVIRPKETETTALGAAFLAGLAVG
                     VWPSIQALEAMWQSDRVFTPATNESTKEIINLWHERINRILS"
     gene            complement(5790..6239)
                     /locus_tag="DHV98_06720"
     CDS             complement(5790..6239)
                     /locus_tag="DHV98_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK06042.1"
                     /translation="MRTEKISYPKTSCACAVSLDLLGDKWSLLIIRDLFRGKSTYSEF
                     LKQSQEGIATNILVDRLKKLLAMGIIDFRRASHDKKIKKYFLTDRGIDLYPVIYEFQR
                     WTLKHVDFDYTDNTKNWNDLIQNTPQEEVINQYQNGYRALRLSEFGF"
     gene            complement(6371..7246)
                     /locus_tag="DHV98_06725"
     CDS             complement(6371..7246)
                     /locus_tag="DHV98_06725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06043.1"
                     /translation="MSKLYSVLFSPENRAKLERLTVILAIAGFFTHLVLIGAAQIWTL
                     ELFGGQLLQNPINAIYTPFSFILIFEIYLLIFYLPRSFSTSLLKQFEVISLIMVRRVF
                     GDITKINFAEIEISDPGFIKLVIDLGAVLVMALAILLFIKAKNKLKAYGQPDMDAGEQ
                     KFNNLKRQVSAILLVILGGISLLHLLDFAVVQSTGEHLVASFNNDLDSIFYKDFFTTL
                     ILADVLILLLSYALSQDYFKLIRNTGFVITTILLRLSFGASQPLDVLLIITGTAFGYM
                     MLILYSSYSREIQNS"
     gene            7294..7890
                     /locus_tag="DHV98_06730"
     CDS             7294..7890
                     /locus_tag="DHV98_06730"
                     /inference="COORDINATES: protein motif:HMM:PF04832.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06044.1"
                     /translation="MVRARTLNYLWHEKEKIMNARTTLLVLITLFYLNHTMAQKYETQ
                     PYDLVQKYEEAELRYYPPVMKIQSNGDFGSLFRYISGGNETGVKIAMTTPVQMGNTSG
                     DQVMQFVLPSDYTTENTPLAKDNKVQVLESESGHYIAIQYGGYTRSSREKTAAQQLQA
                     IAQKYNLKLTGKPILMVYNSPFQVFNRKNEVLYKVVLQ"
     gene            8003..8929
                     /locus_tag="DHV98_06735"
     CDS             8003..8929
                     /locus_tag="DHV98_06735"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06045.1"
                     /translation="MKKLFLFTFLLSFGAVSAQKHANGKIFDKHPALDIVDEFTKAYT
                     SGDTTTLKALTTEGFKMYNMMNNDPDYTGGTRRNLMGQAIWLSNNMVNLKIENRPPAY
                     PDAMEFKDGPVYVYTYEMMTGFDKNNGFKINTPRNSTFIFDESGKKINRLLFSDNTAH
                     FQKYSDSRETKTNGTIYKDHPVIAKVRLAFAYLETGDLDKAFEGYNEDARIYDINDPD
                     QSFISLAAHKEKLAAFMDMYEIVYIQESGYPDVLDYEGDGKVIISWWDFMLRHKKTGK
                     EVKFKSHNQHWLDDEGVIWREDAYYNAALMQE"
     gene            complement(9014..9769)
                     /locus_tag="DHV98_06740"
     CDS             complement(9014..9769)
                     /locus_tag="DHV98_06740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06046.1"
                     /translation="MKKLMLSLLLVAFALPMSAQSDFYVTLWYGQVKNSDAQSHIEIE
                     REYYTKMWKEQINQGNIMGWDMWQIINPDVNEMTTTFIYVTLHNTPSFSVSPVNSIPG
                     KSDKDWQAAQKEAMSHYVKNYSVVTSVKGGYGPQMGGTPPEYAVINYMEVDPYRAAEY
                     ERAELEDFMPAFKENDKVRKGWGLHKVLNHYGTENPINYVTVDFYDSYDAILMARDNT
                     GAMSEEDMAFWKKFDEVRTLADSHIIRLVQAVR"
     gene            complement(9916..11016)
                     /locus_tag="DHV98_06745"
     CDS             complement(9916..11016)
                     /locus_tag="DHV98_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019234274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline monooxygenase"
                     /protein_id="HCK06047.1"
                     /translation="MSKFFVHPDIKKAETLPAQFYRDPEVFQRLADEVFCKTWQFLGD
                     QETLLPLNESHAPLSFLSPLVEEPLLLVRDQTEQIRCMSNVCTHRGNLLAHHPGRGKK
                     LICHYHGRRFGLDGLFKSMPEFEQAEDFPRPCDHLHQYPLRNWHGLLFASIEPAFDLD
                     EVLGQMQERIGFMALDQLKYDPIRSRDYLVNGHWALYCDNYLEGFHIPFVHHGLNAAI
                     DYETYETHLYRHMNLQIGLSKGDALSFNLPQGHPDYGKSVSAYYYWVFPNMMFNFYPW
                     GLSINVVRPISKKQSKVSFITYVMDAAKLDQGAGADLDKVEREDEFVVEAVQKGIESR
                     HYATGRFSPTREQGVHHFHRLLAEFLINSNTK"
     gene            complement(11013..12293)
                     /locus_tag="DHV98_06750"
     CDS             complement(11013..12293)
                     /locus_tag="DHV98_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020534615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HCK06048.1"
                     /translation="MKKIGLWSSTALVTGNMIGSGIFLLPATLASFGGIGLMGWLYSA
                     MGALLFTLVFRQLSQRLPETIGGPYAYVKLMLGDFWGFLVGWGYWVSIWCTNAAIAVA
                     FVGYLSVFLPEINSNTPLAIGCGLGAIWALSAVNSFSIRTVAWVQKITTVLKLLPILA
                     IGFIGIFYIDWSLINFDNLSGQSDFQAISAVTTLTLFAFLGLESATVASGRTKNAAKT
                     VGRAGMIALGITGVTYILSSVAIFGILPPEVLKDSSAPFADAASVFWGEKAKYIVAAG
                     AIAATLGALNGWLLIQGQIPMASAQDGLFPKIFARVNRHGAPIIGIVISSVLASTVLT
                     FRFSEQLAQVFGFMMNLSTLSVLTPYLMTIISLLLLLKRDPTPNRMMQGVSYLSIAFC
                     LWIIYGCGLEVVAYGGLLVLAGIFIYFTLIKPKK"
     gene            complement(12303..13193)
                     /locus_tag="DHV98_06755"
     CDS             complement(12303..13193)
                     /locus_tag="DHV98_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008868045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HCK06049.1"
                     /translation="MKRRTFVKLGSAACAASLLPFSCMNRNQSTTKMGLQLYTVRDAM
                     QRDVLGTLKALKVMGYTNFESYGYDALNKTYYGMTPEQFKNMLEDLELSTDSGHYGFA
                     DYLWSSREELLAYTDACIEGASRLGDEFIVWPIVREADRNLEGFKKLTEQLSIIGERA
                     SAAGMGFAYHNFGYEFEPYEEFMPYQYIIEQTDPSQVKLEVDFYWVARAGVYTPKEII
                     ELAPGRFPLWHIKDMDKVTRDYTELGNGSIDYKRLMPDPDRAGLKYHYIEQGGNFAQD
                     SMSSVAQSAQYFNNELTPLF"
     gene            13391..13612
                     /locus_tag="DHV98_06760"
     CDS             13391..13612
                     /locus_tag="DHV98_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018022860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK06050.1"
                     /translation="MIFRHRVKEYRLQKGWSQQKLADHLKVSRQTIISIESYRYNPSL
                     ELGMRLSMALEAPMEVLFYFEFHSAITHD"
     gene            13742..14023
                     /locus_tag="DHV98_06765"
     CDS             13742..14023
                     /locus_tag="DHV98_06765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06051.1"
                     /translation="MFTENQIKLAAAASAMAHPVKVAILECLTTSDDWQESCLADRIK
                     IPREAVQKGLQELRALGLIEGSISEDRMRYKLNKENWQEFKDYIRSNFD"
     gene            complement(14045..14908)
                     /locus_tag="DHV98_06770"
     CDS             complement(14045..14908)
                     /locus_tag="DHV98_06770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HCK06052.1"
                     /translation="MLRRKFISKTATSGLLIAGIPSLAQSSILTRNNESSGKINHSVC
                     HWCFEQIPLEDFLITLRRLGIGAIDLVGPKDWPLLKKYNIHCSMCNGAELGLTKGFNN
                     PQYHNQLIENYSRLIPMVAQAGYTNLICFSGNREGMSDKEGLANCVAGLSKILPIAEA
                     HGVVLQMELFNQIDHPDYMCDRSDWGISLCKALGSDSFKLLYDIYHMQIQEGDIIRTI
                     QDNHQYFGHYHTAGVPGRHEIDESQELYYPAIMRAIAATGFKGYVAQEFIPTSDDPIA
                     SLVKAIEICDV"
     gene            complement(14970..15410)
                     /locus_tag="DHV98_06775"
     CDS             complement(14970..15410)
                     /locus_tag="DHV98_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004178309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HCK06053.1"
                     /translation="MVNIEFRSSCPIANTLDIIGDKWSLLVIRDLFIGRSTYSEMLKS
                     PENIATNILVNRLKKLISYGLIGYHKKKGDGKTKYYFLTDAGIDLMPVLCDMMYWRRK
                     HHPEWETHPIAQEMYDRIDHEGCDTLFQKNAELKRQERAQLLLS"
BASE COUNT         4593 a         3519 c         3133 g         4326 t
ORIGIN      
        1 taattcttga gcatctgttc caaatacgct gacctgttgt ccataattac tctcggccat
       61 atcatctaag ggcaagtgaa tgtcctcaaa atctctcact ggaatcacgg ggccaaattg
      121 ttcctcgtga tagatcttca tctccttggt caccggatac agtaccgctg ggaatataaa
      181 attactgctg cgctcaccac ctcgtttatt gatgattttg gcccctttgc ctagggcatc
      241 atcaatgagc gactgaatgt agtcgggttt atgcggctca gggagcggcg tcagcaaggt
      301 gttctcccaa ggcatcccca attgcaaagc atctacagca tcggaaaaag cagataaaaa
      361 ttgatccttt atggttttgt gtacatacaa tattttcaag gctgtacagc gctgtccatt
      421 aaaggaaagg gtccctgaaa tacattctga taccgcattt tgcaggtcgg cactgggcaa
      481 gatgattccg ggatttttcg cctccagtcc aaggaccaaa cgcaaacgat ttttgttagg
      541 gtgtaggtct tgaagagcaa tcgctgagga actatgacca atcaaagcca acacatcgat
      601 gtgtccggac ttcatgatgg gcgaagccaa ctctcggcca cgtccgaaaa gtatattaac
      661 cacccccttt ggaaaactgg tggcaaaggc ctcaagtaaa ggacctataa gtaatacccc
      721 cagtttggcg ggcttgaaaa tagtcgtatt gcccatgatt atagcgggta taagcaacga
      781 aaaagtctca ttgagcggat aattatacgg ccctaagcac aatacgattc ctagtggtcc
      841 acgtcttatg tgggcgcgta cgtcactgtc attcaaaaag cgcgcccctt ttcgatcaaa
      901 atccttacag gcctcgatgg tatcgtaaat gtaatctacc gttcgatcaa attctttctg
      961 ggagtctttg taattcttac cgatctccca cattaataat ttcaccacct catcgcgttt
     1021 ggtcaccatc tttgcggcga aatcttccat gcatttaatt cgatccgtaa cgcgcatggt
     1081 gggccactcg cccatgcctc tgtcaaatgc cttgaccgat gaacggatgg cctctagtgc
     1141 agaagcttca tccatggcac tcacctgccc gagataagtt ggtcccatat ttccttgagc
     1201 atcttttgtt tcaatagtag agtataccga agtcattgct cctgtccaag tgataatttc
     1261 gccatcgcat agatatttat ctaacttcac ttgtgaagga atgtattgtt caggtattga
     1321 aaatgtgttt aaattcatgg ttttaacgta agcccttggg cattaattga ttaagcgtcc
     1381 taagtgcctc aatcgaaata ttgtttttat tggaaagaga tgtaaaatgt acaaaaaaaa
     1441 caaacaacaa tgtggccagc taaaaaactc agcctaaacg cccatgaaat aacgagactt
     1501 aaacttaaaa tccatatttc tttgtacttt agtaattaca aacccaaaac tccatataat
     1561 gaaaacactt cttacattcc ttgcactttg tattacactc ggtgcccata gtcaaaaatc
     1621 gaccattaga accaacattc cttcagcgga catatttatc gacggaaaac ttgtaggtca
     1681 aggagaagtg ggcggtataa agattccgag aaatgaatgt attacagtac aagttagcgc
     1741 aaccggctac ctttctcaaa caaaagaata ctgtaaaatc aaggggatgc cccaaataga
     1801 aaaaacagag tacattgaac tgggtgtgga tgattccttc gaggcgagtg ttcagtccga
     1861 tttcgccaat aatgacatta tcattaatcc aaaaaataag gatgtcgaag aagtctggaa
     1921 aaatgcattt cgccttattt ccaattattt tgacgccatg gaagtcaacg acaccgaagt
     1981 atactacctc agaacatcat gggtggttgc cacatttaaa ggatatacta ttagaacacg
     2041 ggtcatttac cgtttgacga gagaaaatcc cttggagttc tccatcaagg tggtttcaga
     2101 acgtgctgag ggacaggcca gccctaaaga cgatgaaaag tataagcctt ggacacgtat
     2161 tttaaagcgt tatgctgccc ttatcgaaga agtgcaacag cgctcttaaa cacaaggacc
     2221 tattcgatga ataaattaaa gccccttttg gggnntagtc cccctatcag cgctaaaatg
     2281 gcaatcataa attagtctta aagccgctca tgcttgcatt atattatttt aatttaggcc
     2341 gaatctagcc ttcattacct tatgttcaat gcctataaat tcaaatttta ccatccccta
     2401 ttgttacttg tatttccttt aattggcact ttattgagcc ctcaagttaa ttggacatgg
     2461 tttgattatc ttgttatggg ggggttgtta ttgagcctgg gaatcggcgc tcattttatt
     2521 ttaaagcggt tcaacaaaag tgctaaaaaa tggacttatc tctttgccct cattttagtc
     2581 tttatgttga tttgggcaga actcgcagtc ggtatttttg gcagtccgct agctggcagt
     2641 tagaagcaaa tataataccc ccgcgaccgc acctccaata aacggtccca aaacgggaat
     2701 ccaggcatag ggccaatcgg aatttttttg tcgcatagga attaggtgat gtaccaaacg
     2761 cggaccaaaa tcacgggcag ggtttatggc atagcccgta gttccaccca gacccatacc
     2821 aatgacccaa acgaggatgc ccacgggtaa ggcatcgagc gaaccgatgc caaaattggt
     2881 cacctcagcc ccatcaatgg acatactggg tccagcaata aacaagaccc caaaaaccag
     2941 cataaatgtc cctatggcct cgctaaagag gttgttttta taattcctca cggccggccc
     3001 cgtacaaaat gtactgcgta ccgcatcgac atcttcagta gctctataat ggtcaatata
     3061 aagtatgtag gccagccaac ttccggccat agcccctaga acttgcgcta aaatatagcc
     3121 tgcggccatt tgccaagcga actttcccgc cacggcaagg cccaaagtta ccgctggatt
     3181 taggtgtgct ccactaaatt gtccggtaat aaaaacggct acaaatacag caaatcccca
     3241 tgcactggta atcaataccc agggggtttg acccgagcca attgtttttt tcaagttaac
     3301 atttgccacc acgcccatcc caagcaggag taatatggcc gtgccaataa attcggcgat
     3361 atacggattt gtcatagtgt ataggtgttt aaaatttttt tggtttgatt gatttcattt
     3421 ttaacccagt cggaatcctt tttgagttcc tctgccataa tttgagcgat ttcggggagc
     3481 aatcgccgtg tttctttagc gtctaaaaac atacctctga cccttcgtgc aacgatatct
     3541 tcaagacgca tggccatttc ttgccttata ccatacagaa tttgattctt actaatgtaa
     3601 tacttatcgc tcaatgattt gttgtgaatt tcggggcctt gatttaacac cgcgctccgt
     3661 tctgagccat aaacgtgtag cggatcctca aaagctaatc ccgactcatg gccaaagagt
     3721 ttaagctttc gggttttaca ttttgaatca ttgccctagt ttcttctttg ctcaaccatt
     3781 gggatttacc caaaccaaga tctccggcca tcatatcgta aatcttgagt ccaacgctgt
     3841 agaatgggcc attccaccag gaataaatgg ggatgacaaa actcatgtcc cgcactaaat
     3901 gcggggcgtt ttgtttcatt atcccccgct ctttaagggc ctcaatgacc aaagagacat
     3961 ccccgttttg taggtagcga acgcctccat gcacgagttt tgtacttcgt gacgaggtgc
     4021 ccttggcaaa atcatggcgt tctaaaagca gtgtcctgta tccgcgattt gcagcatcta
     4081 cggcaatgcc aagtccactg gcccctccgc caataatgac tacatcccat tggctccgtg
     4141 attttacgcg ctctatatgg acggatcgtc gcattatcct gatcgttgtt tggtctggac
     4201 tttggtcctt attgtttcat gagcaatagt ggtcattctt atcatttcat ttaagataaa
     4261 attctgttga tgcgctcatg ccataaatta atgatctcct tggttgattc attggtggcc
     4321 ggggtaaaca ctcggtcact ctgccacatg gcttccaagg cttgtattga tggccaaaca
     4381 cccacggcta gacccgcgag aaaggcagcc ccaagggccg tggtctctgt ctctttaggg
     4441 cgaatcacct ctgcccccaa aacatcagcc tgaatttgca tcagtaaatc gttattgctc
     4501 gccccaccat cgacctttaa ggttttaaaa tcaacccccg cgtctttttg catttctaaa
     4561 ataatatccc gagatctcag ggcaatagcc tcaagagccg cccgagcaat gtggcctttg
     4621 gaggtgcctc gcgtgatgcc aaaaatagtc cctgtggcgt aaggatccca atagggggct
     4681 ccgagtccag agagtgccgg gataaaggtt actccgtcgc tgtgggtcac agatgcggcc
     4741 aagtcttcaa tatccgcaga tttttcgatc atgtgcaatt gatcgcgcaa ccattggacc
     4801 agggctcctg cggtgaaaac actcccttct atcgcgtagg ttacttttcc atctatctgc
     4861 caggcgatgg tggtcagcat tttatttttt gaaactacgg gcttgttccc tgtattcatg
     4921 atacaaaaac agccggtgcc ataagtgttt ttaaccgttc ccggttctaa gcaaagttgc
     4981 ccaaatagcg ctgattgctg atctccagct accccagcaa taggaatact cgcccccaat
     5041 atttgttcat tggtatgacc gaccacctca gaagaggact tgacttcagg cagcaataac
     5101 tcaggaacct tcagaatcga caggagctgc tgatcccaac acagctcatg aatgttatac
     5161 atcaaggttc tgctggcatt cgtgacatcc gttatgtgaa tagcgcctcc ggtgagctgc
     5221 caaataagcc agctgtcgat ggtgccaaag gccaattctc cttgctcagc acgccggcgc
     5281 aaatcaggat cactgtccaa aatccacttg accttggtgc ctgaaaaata ggcatcgatg
     5341 accaggcctg ttttatttaa aaaagttggt gcgtgacctg ccgcgcttaa gtcttggcag
     5401 taggctgcag tgcggcgatc ttgccagaca atggccttgt aaaccgggat ccctgttttg
     5461 cgatcccaaa tgacggtagt ttctcgttga ttggtgatcc cgatacaagc aatgtcttga
     5521 ggatcaagtt ttgccttttt aatgacctcc ttgatcgctt ttaactgcgt ctcccaaatc
     5581 tctaacgcat cgtgttctac ccaggccttt tgcggaaaaa tttgggtgaa ctcgtactgg
     5641 gctagtgcaa gttgatttcc ctgctgatca aaaattatcg ctctagaact agttgttcca
     5701 gcatcgatgg aaaggatata ttgcggcata actcaacttc tttggattct gaagtcaagt
     5761 taataaaaat tcaagatttt ggtaagccct taaaaaccga actcgctcag gcgcaaagct
     5821 ctgtatccat tctggtattg gttgattacc tcttcctgtg gggtattctg aattaaatca
     5881 ttccaattct tagtgttatc cgtgtaatca aaatctacat gcttgagcgt ccaacgctgg
     5941 aattcgtaga tcacagggta gagatcaatt cctctatcgg ttaaaaaata ttttttaatc
     6001 tttttgtcat gtgacgctct tctaaagtct ataatcccca tggccaagag ctttttcagg
     6061 cggtctacta aaatatttgt cgcaattccc tcttgagatt gctttaaaaa ttctgagtaa
     6121 gtactttttc cacgaaacaa atctcgtatg atcagtaaag accacttatc ccctaaaaga
     6181 tcgagagaaa cagcacacgc acaggacgtt ttcgggtagg aaattttttc cgttcgcata
     6241 taaaaattnn cttccgatct cataggtaaa tatacaaatt agtcatcccg cagttaaaat
     6301 taatctttta ataacattga aaaacgcaag ttaatctgtg atttttgccc tgttcaaaat
     6361 ggttgatttt ttaactgttt tggatctctc gactgtaaga cgaatagagg atcagcatca
     6421 tatatccaaa tgcggttccc gttataatca gcagaacatc cagcggttgg gaagcgccaa
     6481 aagaaaggcg caacaaaatg gttgtaatga caaaacctgt attgcgaatc aatttaaaat
     6541 aatcttgaga cagtgcataa gacaacaata aaatcagcac atcagccaga attaatgttg
     6601 taaagaagtc cttataaaaa atcgaatcta agtcattgtt aaaagaggct actagatgtt
     6661 cgcccgtgga ttgtactaca gcgaaatcta aaagatgaag caatgatatt cctcccaaaa
     6721 taactaacaa tattgccgaa acttgacgct ttaaattatt gaacttttgt tctccagcat
     6781 ccatatcggg ctgcccatag gccttgagtt tatttttggc cttgataaat agtagaatcg
     6841 ctaaggccat aaccaaaacc gcgcccaaat caataacaag cttgataaac ccggggtcac
     6901 tgatttctat ctcagcaaaa ttaatcttgg taatgtctcc aaaaactctg cgcaccatga
     6961 ttaaggaaat cacctcaaat tgtttcaaaa gagaggtgct aaaagagcgc ggcaaataga
     7021 aaattaataa gtaaatctcg aaaatgagaa taaatgaaaa cggggtgtat attgcattaa
     7081 tggggttttg caatagttgt ccgccaaata attcgagggt ccaaatctga gccgccccga
     7141 tcaataccaa atgcgtgaaa aagccagcaa tggctaaaat cactgtgagc cgttcgagtt
     7201 ttgcgcgatt ttctggcgaa aagagaaccg aatataattt actcattttt agagaattat
     7261 ctctctaaag taagctaaat attttgattt cctatggtta gagcccggac tttgaattat
     7321 ctttggcatg aaaaagaaaa aattatgaac gcaagaacca cactcctggt cctaattacc
     7381 ctattttacc ttaatcatac tatggcacag aaatatgaaa cgcaacctta tgaccttgtt
     7441 caaaaatatg aagaagctga attgcgctat tatccgcctg tgatgaaaat tcaaagtaat
     7501 ggagattttg gatccctgtt ccgatatatc tctgggggta atgaaaccgg ggtgaaaatt
     7561 gccatgacta ctccggtaca aatgggcaac acttccggag atcaggtgat gcagtttgtc
     7621 ttgccctctg actataccac agaaaatacg cctctggcaa aggataataa ggtccaggtc
     7681 ctagaatcgg aatcaggtca ctatattgcc attcaatatg gaggctatac gcgaagcagt
     7741 cgcgagaaaa cagcagccca acaactacag gcaatcgctc agaaatataa cctcaaattg
     7801 actggaaaac caattttaat ggtttacaat agcccatttc aggtttttaa ccgaaagaat
     7861 gaagtgctct ataaggttgt cctccaataa aaaataagat ataaatcgcg ttaatcttca
     7921 tgataatctt ttgacaactt tgaattgtta ttttttgcaa ttaaaaatta taaattagtc
     7981 ccaaaccaat aacacataaa tcatgaaaaa actattttta tttacatttc tattgtcttt
     8041 tggcgctgtt agtgctcaaa aacatgctaa cggtaaaatc tttgacaaac acccagcttt
     8101 ggatattgtt gatgaattca ctaaagccta cacctcaggc gacaccacaa cccttaaagc
     8161 cctgaccaca gaaggcttta aaatgtacaa catgatgaat aatgatcccg attatacggg
     8221 cgggacaaga cgcaatctca tgggccaagc aatatggctg agcaataata tggtcaattt
     8281 aaaaattgaa aatagacctc ctgcttaccc tgatgccatg gaatttaaag acggacctgt
     8341 ttacgtttac acctacgaaa tgatgaccgg atttgacaaa aacaatggct tcaaaatcaa
     8401 tacaccgcgc aacagtacct ttatttttga tgaatcagga aagaaaatta atcgcttact
     8461 tttctcagat aatactgcgc actttcaaaa atattcggac tcaagagaaa caaaaaccaa
     8521 cgggacaatc tacaaagatc accctgtaat tgccaaggtt cgtttggcct ttgcttacct
     8581 tgaaaccgga gatttagata aggcctttga gggctataac gaagacgctc gtatttacga
     8641 catcaatgat ccagaccaga gcttcattag cctcgcggcg cacaaagaaa agctcgctgc
     8701 atttatggat atgtatgaga tcgtttacat ccaagaaagc ggttatccag atgtcctaga
     8761 ctacgagggg gacggtaaag taattatctc ttggtgggat tttatgttac gtcataaaaa
     8821 aactggcaaa gaagttaaat tcaaatcaca caatcagcat tggcttgacg acgaaggagt
     8881 gatttggcgt gaagatgcgt attataacgc cgcgttaatg caagaataag tactttgttt
     8941 atcaaaccac aaaggatcaa ataaaaaagg ccgcgatact cgcggccttt ttttgtactc
     9001 caatttaaag taattatcga acagcctgaa ctaatcgaat aatatgagag tctgcaaggg
     9061 ttctcacctc atcaaatttt ttccaaaaag ccatatcttc ttcagacatt gctcccgtat
     9121 tgtcacgagc catcaaaatc gcgtcgtaac tgtcataaaa gtctaccgtc acgtagttga
     9181 tgggattttc tgtaccgtag tgattcaata ctttatggag gccccatcct ttacgaactt
     9241 tgtcattttc tttgaacgca ggcataaaat cttctagctc agcacgctca tactctgcag
     9301 cgcgataagg atctacttcc atgtaattaa ttacggcata ttctggtgga gtgcctccca
     9361 tttgaggccc ataaccgcct ttgaccgacg tcaccacaga gtaattcttg acgtaatgac
     9421 tcatggcctc tttttgagcc gcttgccaat ccttatcgga tttccccgga attgaattca
     9481 ctggactcac cgaaaaactt ggcgtattgt gcaaggtcac ataaataaag gttgtcgtca
     9541 tttcattgac gtcaggatta atgatttgcc acatgtccca acccataatg ttgccttggt
     9601 taatttgttc tttccacatt ttggtgtagt actcgcgttc gatttcaatg tggctttggg
     9661 catcagaatt tttaacctgt ccgtaccaaa gggttacgta aaaatcggat tgtgcgctca
     9721 tgggcaatgc aaaggccaca agcaataagc ttaacattag ttttttcatt gttgttgatt
     9781 aaaaattaaa ataattgtcg tttggtcaaa attaacatta atattgttaa ttgcaattaa
     9841 aattatttta atctttacgc tctatttgaa aacaaaaacg tagccctagt gattactcct
     9901 tgattaattc gttaatcact ttgtattgct attaatgaga aactccgcga gcaagcgatg
     9961 aaaatggtgt accccctgct ctcgggtggg actaaaacgc cctgtggcgt aatgccgcga
    10021 ttcgatgcct ttttggaccg cctcgaccac aaattcgtct tcgcgctcca ctttgtcgag
    10081 atcggcgccc gcgccttgat cgagtttagc agcatccatg acataagtga taaatgagac
    10141 tttggactgc ttttttgaga tcgggcgcac cacattaatg gagagccccc aaggatagaa
    10201 gttaaacatc atgttcggaa aaacccaata ataataggcc gagaccgact tgccataatc
    10261 aggatgcccc tgtggcaggt taaaactaag cgcatccccc ttactgagtc cgatttgtag
    10321 gttcatgtgc cgatataaat gcgtttcgta agtctcgtaa tcaatagccg cattgagccc
    10381 gtgatggaca aaagggatat ggaatccttc aagataatta tcgcaataca aagcccaatg
    10441 accattgacc aggtagtcac gactgcgtat tgggtcatat ttgagttgat ccagcgccat
    10501 aaatccgata cgctcctgca tttgacctaa aacctcatct aaatcgaaag caggctcaat
    10561 actggcaaac agtaggccat gccagttgcg caaaggatac tgatgtaaat gatcgcaggg
    10621 acgtggaaag tcttctgcct gttcaaattc tggcatactt ttgaatagtc cgtctaaacc
    10681 aaagcgtcgc ccatgatagt gacaaatgag ctttttgcct cggcccgggt gatgagccaa
    10741 aagattccct cgatgggtac agacgttaga catacagcgt atttgctccg tctgatcgcg
    10801 aaccagaagc aagggctcct caacgagcgg ggacaaaaag ctcaacggcg cgtgcgattc
    10861 attaaggggc aagagggttt cttggtctcc tagaaattgc catgttttgc agaacacctc
    10921 atcggcgagt ctttggaaca cttcgggatc acgataaaac tgtgcgggca gcgtttcggc
    10981 tttttttata tcggggtgga caaaaaattt actcatttct ttggcttgat tagggtaaag
    11041 taaatgaaaa ttcccgctaa caccaacagg cctccatagg ccactacttc aaggccacag
    11101 ccatagataa tccaaagaca aaatgctata gataaataag acaccccttg catcattcga
    11161 ttcggggtcg ggtctctttt gagcagcaac aacagactga ttatggtcat caaatagggc
    11221 gtcagcactg ataatgtcga aagattcatc ataaagccaa agacctgagc caattgttct
    11281 gaaaacctaa aggtcaaaac cgttgaggcc aatacactag aaatgacgat cccgataatt
    11341 ggcgcgccat ggcgattaac ccgagcaaat attttgggaa agagtccgtc ctgggcagag
    11401 gccataggga tttgaccttg tatgagcagc caaccgttca aggcgccaag cgtcgcggca
    11461 atagcaccgg ccgcaacaat atattttgcc ttttcgcccc aaaataccga agctgcgtcg
    11521 gcaaatgggg ctgaagaatc ttttaagacc tctggcggga gtatcccaaa aattgcgacg
    11581 gaagacaaaa tataggtgac cccggtaatc ccaagggcaa tcattccggc tcgccccact
    11641 gttttagcgg cgtttttcgt tcgcccactg gcgacagtag ccgattctag tcccaaaaaa
    11701 gcaaatagag ttaaggtcgt caccgcagaa atggcctgaa aatcactttg gcccgataga
    11761 ttatcaaaat taatcaaaga ccagtcgatg taaaagatcc caataaaacc aatggccaaa
    11821 ataggcagga gctttaatac tgttgttatt ttttgcaccc aggcgaccgt gcgaatcgaa
    11881 aaactattca ctgcgctaag tgcccaaatc gccccgaggc cacaaccgat cgccaacggc
    11941 gtatttgagt tgatttccgg cagaaataca gataaatagc ccacaaaagc aacggcaatc
    12001 gccgcattgg tgcaccaaat cgagacccaa tacccccagc cgactaaaaa tccccagaaa
    12061 tcacccagca ttaattttac ataagcatag ggccctccga tggtctcagg cagtctttga
    12121 ctgagttggc gaaaaacgag cgtaaaaagc agcgcgccca tggccgaata cagccaaccc
    12181 atcaggccaa ttccaccaaa agatgccagc gtagcgggca ataaaaaaat acccgaacca
    12241 atcatatttc cggtaaccag cgcagtactc gaccaaagtc ctattttttt catccgttgt
    12301 ttttagaata gaggggtcaa ttcgttatta aaatattgcg cgctttgagc gacactgctc
    12361 atagaatctt gagcaaaatt acccccctgc tcaatatagt ggtacttgag cccggcgcga
    12421 tcggggtccg gcatcaacct tttataatcg attgatccat ttccgagctc tgtataatca
    12481 cgggttacct tgtccatatc tttgatatgc caaagtggaa agcgccccgg ggcaagttct
    12541 attatttcct ttggggtata cacccccgca cgggcgaccc aataaaaatc tacttcgagt
    12601 ttgacctgtg atggatccgt ctgctcaata atgtattgat agggcataaa ttcctcgtat
    12661 ggctcaaatt cataaccaaa attatgatag gcaaagccca tgcctgccgc tgaagcccgc
    12721 tctccaataa tgctcaattg ttctgtcaat tttttaaatc cctctaaatt acgatccgcc
    12781 tcgcgaacaa tcggccatac gataaattca tctcctaggc gcgaggcccc ttcgatacaa
    12841 gcatctgtat aggctagcaa ttcctccctc gaagaccata aataatctgc aaaaccatag
    12901 tgcccgctat ctgtggacaa ttcgagatcc tcgagcatat tcttgaattg ttctggggtc
    12961 atcccataat aggttttatt caatgcgtca taaccataag actcaaaatt cgtatagccc
    13021 attactttta gcgctttcaa ggtccctaat acatcacgct gcatcgcatc acggaccgta
    13081 tagagctgta agcccatttt ggtcgttgat tgattgcgat tcatgcacga aaacggcaag
    13141 agactcgctg cgcaagcggc gcttccaagc tttacaaaag ttcttctttt catgggctag
    13201 agggtctaat ttttattgag gacacacgta ttattttggt aaagcatgct ttacattatt
    13261 taggtaaagt ctacttaact atctctatgt aaataatact ttacactaaa atccttatat
    13321 ttacgaagaa attccacgcc tgtgtgaaca ttactccatt taaaagtaca atatttaaac
    13381 tgaattcttt atgatctttc ggcatcgcgt caaagaatac cgattacaaa agggctggtc
    13441 acaacaaaaa cttgcggatc atctcaaagt gagtcgacaa acgataatat caatagaaag
    13501 ctatcgttat aatccgagct tggaactcgg catgaggctg tcaatggccc tcgaggcgcc
    13561 tatggaggtc ttattttact ttgaatttca ctcggcaata actcatgact aactcagata
    13621 taatccgagc taaacaacta aaaatccggg ctttaacgcg tgctcttggc caaaaatcat
    13681 taaaaccaat atttttttac ttattttgta gttcgaataa ttaaacgccc taacctgccg
    13741 aatgtttact gaaaatcaaa ttaaattggc tgctgcagct tctgcgatgg ctcatcccgt
    13801 gaaagtcgcc atacttgaat gtctgaccac cagtgatgat tggcaggaaa gttgtctggc
    13861 cgaccgcatc aaaatcccga gggaagccgt tcaaaaaggc ctacaagagt tacgcgccct
    13921 aggacttatt gagggcagta tttctgagga ccgcatgcgt tacaagctta acaaagaaaa
    13981 ttggcaagag tttaaggatt atatcagaag caatttcgat tgatcctaga atagcaactg
    14041 atatttagac atcacaaatc tcaatagcct tgaccaatga ggctatcgga tcatccgagg
    14101 tagggataaa ttcctgagcg acatatcctt taaaaccggt agcggcaatc gcccgcatta
    14161 tcgcaggata atacagttct tgtgattcgt cgatctcatg gcgtcctggg acccccgctg
    14221 tgtggtaatg gccaaaatat tggtgattat cttgaattgt tctaataata tctccctctt
    14281 gaatctgcat atggtagatg tcataaagca acttaaaaga atcacttcca agggctttgc
    14341 ataatgaaat cccccaatcg gagcggtcac acatataatc cgggtggtct atttgattaa
    14401 acaattccat ttgcaagaca acgccgtggg cctctgcgat aggcaaaatc ttactcaagc
    14461 cggcgacaca atttgctaaa ccttctttat cgctcatccc ttcgcggttg ccgctaaagc
    14521 aaatgagatt agtataaccc gcttgggcaa ccattggaat gagtctagaa tagttttcaa
    14581 tgagctgatt gtggtattga ggattattaa acccctttgt taaacctaat tctgccccat
    14641 tacacatgga gcaatgaata ttatactttt taagaagtgg ccagtccttc ggccccacaa
    14701 gatcaatcgc accaataccc aatcgacgta aggtgatcaa aaaatcttct agaggaatct
    14761 gttcaaagca ccaatgacac acactgtggt tgatctttcc gctagactca ttgtttcgcg
    14821 ttaagatgga cgattgtgct agagagggaa tgccggcaat caaaagtccg ctagtggccg
    14881 ttttgcttat aaattttcgt cttaacatcc cgctattttt tagatagtgt aagatataaa
    14941 aaacagccgt gaattcaatt ttggctaatc taagataaga gcagttgcgc ccgctcttga
    15001 cgttttaatt cggcattctt ttgaaataaa gtgtcacagc cctcatgatc tatacggtcg
    15061 tacatttctt gggcaattgg gtgcgtttcc cattctgggt gatgctttcg cctccaatac
    15121 atcatatcac aaagtactgg catgagatca atgcccgcat cagtcaagaa ataatatttt
    15181 gtttttccgt cacccttttt tttatgatat cctatcaagc catatgatat taatttcttt
    15241 aatcgattca cgagtatatt cgttgctata ttttccgggg atttcaacat ttcggaataa
    15301 gtactgcggc caataaataa atcccgtatc actaacaagg accatttatc accaattatg
    15361 tctaaagtgt tggcaatggg gcatgaagat ctgaattcaa tattaaccat gacaaagaaa
    15421 atttagtaaa gcctgaaaac gatgagtcgg gcgaataatg cgattaagta ttattaaatg
    15481 ccggtttaag gtagggaaaa aaattagctt tttatctctt tcgacatttt aacagtattt
    15541 tacaacaatt gtctaaaaag aaacctactt tcaaa
//
LOCUS       DPUP01000179           10197 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_456,
            whole genome shotgun sequence.
ACCESSION   DPUP01000179 DPUP01000000
VERSION     DPUP01000179.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10197)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10197)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10197
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>339
                     /locus_tag="DHV98_06780"
     CDS             <1..>339
                     /locus_tag="DHV98_06780"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069539.1"
                     /note="catalyzes a two-step reaction, first charging a
                     glutamine molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCK06054.1"
                     /translation="QKGTPSQAGTVSPYRERSVAENLSLFEQMKNGSCPEGSHVLRAK
                     IDMSASNMLMRDPVMYRILHKSHHRTGDQWHIYPMYDWAHGESDYIEQVSHSFCTLEF
                     LPHRELYDWFL"
     assembly_gap    340..446
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <447..1347
                     /locus_tag="DHV98_06785"
     CDS             <447..1347
                     /locus_tag="DHV98_06785"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013069539.1"
                     /note="catalyzes a two-step reaction, first charging a
                     glutamine molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HCK06055.1"
                     /translation="RRNLSHTVVSKRKLMRLVQEGVVNGWDDPRMPTISGLRRRGYTP
                     NAIRAFADSIGVAKRENLIDVAHLEFCAREDLNKITGRVMAVLDPVLLVLDNYPEDHT
                     EWLTAENNPEDPNSGNREIPFSKYLWIERSDFKEEANRKFFRLSLDKEVRLKNGYIIK
                     GESVVKDAHGAITEIHATYDPLSKSGTDTPEALRKVKGTIHWVSRDHALDAEVRLYDR
                     LFSSAAPDADKDGDFLDHLNPNSLAVITAKVEPGLKTLEIGQPVQFQRTGYFVLDPDS
                     KADALVFNRTVSLRDSWGKLDQD"
     gene            complement(1357..2343)
                     /locus_tag="DHV98_06790"
     CDS             complement(1357..2343)
                     /locus_tag="DHV98_06790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009782011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HCK06056.1"
                     /translation="MNTFLFYFLLVLALFVFWTFIFIVKQQTAVIIERFGRFHSIRGS
                     GLRFKIPVIDRIAGRVNLKIQQLDVLVETKTKDDVFVRLKISVQFQVIKTKVYDAFYQ
                     LENSNDQITSYVFDVVRAEVPKMKLDDVFERKDDIAIAVKRELNEAMLDYGYDIIKTL
                     VTDIDPDVQVKAAMNRINAAEREKVAAEYEAEAERIKIVAKARAEAESKRLQGQGIAD
                     QRREIARGLEESVEVLNNVGINSQEASALLVVTQHYDTLQSVGEATQSNLILMPNSPH
                     AGSDMLSQLITSFSASHQVAQTFGIKPEEEKTPQKKGKGTTPKKGSDPLLEQ"
     gene            complement(2418..3938)
                     /locus_tag="DHV98_06795"
     CDS             complement(2418..3938)
                     /locus_tag="DHV98_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HCK06057.1"
                     /translation="MSQAVRVRFAPSPTGPLHIGGVRTALFNYLFAKKHKGTFVLRIE
                     DTDQARYVPGAENYIEEVLNWLDIPYDEGPNKPGNFGPYRQSERSKYYQTYIQQLIDS
                     GWAYYAFDSTEFLGGLRKNAEAAGETFMYNAQNRLALQNSLALTAEQTEGLISQGTPY
                     VIRFKSPQGRSVVCHDLIRGQVTVDSNVLDDKILFKSDGMPTYHLANVVDDHLMEITH
                     VIRGEEWLPSLALHVLLYEAFGWNAPEFAHLPLILKPTGKGKLSKRDGVLGGFPVFPL
                     QWHQEDAVLDGYREQGYLPEAVVNLLALLGWNSGTEQEVFSLAELITNFSLDRVQKSG
                     AKFDPNKALWFQNHYFQKQPDDIVIADFLAWLEANHKEASRVDLARVVPLVKERAHFI
                     KDLWEASDFFFEPPTQYDPAGVKRAVKEPTVDIISELHASLADHPWDTTESLSEFVKR
                     WCATKEIGVGSVMMPLRLFLVGAMKGPDVFDIMGVLGKIESLKRIKQAISVFERTP"
     gene            complement(3970..4944)
                     /locus_tag="DHV98_06800"
     CDS             complement(3970..4944)
                     /locus_tag="DHV98_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkane 1-monooxygenase"
                     /protein_id="HCK06058.1"
                     /translation="MGGYWGFATIAYVFGVVPILELLLPQSQENLDQEEKTKKSLWGI
                     FDLLLYANLPIVFGLLVYFYTNIVPQYDPAVILGYALSLGIVLGANGINVAHELGHRT
                     TKTERFLGKLLLCPALYMHFYIEHNYGHHQHAATPEDPATAKYNQPVYSFWVTSVFGQ
                     LKSALQIQRSLVRHKKGLEALWHNDLLWYVLAQSLYLVLVYVVFGFNALLWGLIVALV
                     AVLLLETTNYIEHYGLMRPKKASGRYAPVKEIHSWNSNHLMGRILLYELTRHSDHHYR
                     SQKKYQLLDHHPTSPELPFGYPTSIVLSLLPPLWFFIMNPRVPSEMKP"
     gene            5064..8519
                     /locus_tag="DHV98_06805"
     CDS             5064..8519
                     /locus_tag="DHV98_06805"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06059.1"
                     /translation="MSDFQAIEQKLGEFKKKFYLSDLLRGGIFFLAIGALYFLLTAWV
                     EELLWLPKPLRALMFWVFVLVEVGLWFYWIWPALSVLFGIKAPMSNQEAAQIIGTQIP
                     EVGDRLTNTLDLLKQAQDTELVLASIAQKSKTLSPFYFNQAIDLKDNIKHLRWIILPV
                     SVLILIWAFGDLSSLFEGYNRVAAYNQEFVRPTPYHLTFLNEELKARSNQEIRLRIEA
                     KGAVLPNEVFAVVGDQRQTMVPRGFGQFELVIPPQKTSFEVYFGTDQYRSQNYPFEIV
                     YGPEIKGFSVEILPPSYTRMRQQRVENTGNFRALSGSKILWKINTEYTEQIRWANKTD
                     TLYFKSDVIDGFSLAKTVFGNEQYDLSLMNNQVGFESGVAYNIEVYPDERPKILVETQ
                     SDTINSVAHHKVLAWDDFLISKIEVVCYAKEDPKNQRRQRLDVVSGANTQTLYTFPNG
                     FELIKGKAYQYYFEAWDNDGVLGAKSARSNVFGHQESTILEAQEKLLSQQNEQTNQIE
                     KALKSLEEQNNQVEEIEQSRRQKETVNWQDERSLERLLEKQQQQLDNLEQQTEALKNT
                     LERFNENQPDEDGQADELMERLEEQLESLKEQSDRWEELRELQEQLQEEDLLEELSQN
                     QQQQKAQEQNLARLVEMTRRFFVTQKMNQISNQLKELGERQEKLAQDQSDEKTLSEKQ
                     QQQAQLNKEFEAIKKALDLLEQENEKLKQPMSLPRDPGGEMDIAAEQQKATESLKQGE
                     TPQAQESQKQAGQKMQEMAQKLGAEMQQMQQQAMQEDTQMLRQVLDNLIVFSLAQEGH
                     MNLGQKRQLGGWSMPEYINKQNDLRDNFNHIDDSLYALSMRQPMITAKVNQSLSQASY
                     YLGRSLEDLAETRFSSAAVAQQFVFTQANDLANLLDGVVSQMEQMSMSMPGAGSGQGS
                     GSQGFQLQDIIQQQQSLQDQGENKGEQGQQSGEGSSQGGKTGKDGTQGESDQQGGQEG
                     AQQGKGGQSGKDGQNKPQGEGNSGQNGNKEGSYKDTDAERAARYSIYKAQQQLRQELE
                     DRLRKQGLLDLNRGVLQKMEENAQEVLRNGITNRAKALMKEIDYQLMKLEEAQYEQQK
                     EQKRESQTNTRRYDPALNNPWQDERRYFDQLDILIKDALPLQPYYKKQAERYFKIRNQ
                     ANDQF"
     gene            8506..8931
                     /gene="ybeY"
                     /locus_tag="DHV98_06810"
     CDS             8506..8931
                     /gene="ybeY"
                     /locus_tag="DHV98_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008637804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HCK06060.1"
                     /translation="MISFDAQNEFTLDHQEHWTAWLVEVIKIEGFNLGSLTYIFCDDD
                     FLLKLNQDFLNHDTLTDIITFDNNVGRTIHGEIYISTDRVIENSQEYGVSVMNELARV
                     VVHGVLHLCGYKDKSEEDVLKMRGREDYWIEKLNLLNNK"
     gene            8962..10197
                     /locus_tag="DHV98_06815"
                     /pseudo
     CDS             8962..10197
                     /locus_tag="DHV98_06815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020214844.1"
                     /note="frameshifted; incomplete; missing stop; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
BASE COUNT         3062 a         2120 c         2376 g         2532 t
ORIGIN      
        1 caaaaaggga cgccaagcca agcgggtaca gtcagccctt acagagaacg cagtgttgcc
       61 gagaacctgt ccttatttga acaaatgaaa aacggctcat gcccagaggg aagtcatgtt
      121 ttgcgggcta aaatcgatat gagcgcaagc aatatgctta tgcgcgaccc agtaatgtat
      181 cggatcctcc acaaaagtca tcatcgcaca ggggaccagt ggcatattta tcccatgtat
      241 gattgggccc atggagaaag tgattatatc gaacaagtat cccacagttt ctgtactctt
      301 gagtttctac cccatagaga attatacgat tggtttttan nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnccgc cgcaatttaa gccacaccgt ggtgagcaaa
      481 cgaaaactta tgcgcttagt tcaagagggc gtggtcaacg gatgggacga cccacgcatg
      541 cctacaattt ctggcctaag aagacgaggg tataccccta acgcgattcg cgcatttgcc
      601 gacagtatcg gtgttgctaa aagggaaaac ctgatcgatg tggcccattt ggagttttgt
      661 gctcgtgagg atttaaacaa aattaccggc cgagtcatgg cggttttaga ccccgtatta
      721 ctcgtgctag acaattaccc tgaagaccat acagagtggt taaccgccga aaacaacccc
      781 gaagacccga attctggcaa tagagagatt cctttttcaa aatatctttg gatcgagcgt
      841 tcagatttta aagaggaggc gaaccgaaag ttttttaggt tgtctttaga caaagaagta
      901 cggcttaaaa acggctacat cattaaaggg gaatctgtag tgaaagatgc tcatggcgcg
      961 atcacagaga tccatgccac ctatgatccg ctgagtaaaa gcggcaccga tacgcctgag
     1021 gccctgcgca aagtaaaagg cacgattcac tgggtttctc gagaccacgc gttggacgcc
     1081 gaggtgcgcc tgtatgatcg attgttttcc agcgcggccc cagacgccga caaagacgga
     1141 gactttctgg atcatttaaa cccaaattcc ctagcggtga ttaccgccaa ggtagagcct
     1201 ggcttgaaaa cactggaaat agggcagccc gtgcagtttc agcgcacagg ctattttgtg
     1261 ctagacccag actctaaagc cgacgctctg gtctttaaca gaaccgtgtc tttgcgcgat
     1321 tcatggggaa aacttgacca ggactaatca ctagttttat tgttctaaaa gcggatcact
     1381 gccttttttt ggggtggtgc cttttccttt tttttgaggc gttttttctt cctcaggctt
     1441 aatcccaaag gtttgagcca cttgatgact ggccgaaaag gaagtgatca attgagacaa
     1501 catatcgctt ccagcgtgtg gtgaattggg cattaaaatc aaattactct gcgtggcctc
     1561 tccaacagac tgaagggtgt cataatgctg ggtgaccaca agtaaagccg aagcttcttg
     1621 tgagttgatc cctacgttat tgagcacctc tacagactct tcaaggcccc gggcgatttc
     1681 acgcctttga tcagcaatcc cttgaccctg tagccgtttg ctttcggcct cggctcgagc
     1741 ctttgcgaca atcttaatcc gttcggcctc ggcctcgtac tccgcagcaa ctttttcacg
     1801 ctctgcagca ttaatgcggt tcatcgccgc cttaacttgc acgtcaggat cgatatcggt
     1861 gactaatgtt ttaatgatat cataaccata atccagcata gcctcattga gttcacgctt
     1921 aaccgcaata gcgatatcat ctttgcgctc aaagacatcg tccaacttca tttttggcac
     1981 ctcggcccgc acgacatcaa agacataaga agtgatctga tcattcgagt tttcgagctg
     2041 ataaaacgca tcgtatactt tggttttgat gacctgaaac tgaacagaaa ttttaagacg
     2101 cacaaaaaca tcgtctttgg tttttgtttc taccaaaacg tcaagctgtt gaatttttaa
     2161 attcacgcgt cccgcaatgc ggtcaatgac cggtatttta aatcgaagcc ctgagccgcg
     2221 aatgctgtga aaccgaccaa agcgttcaat aatgacagcg gtttgttgtt ttacaataaa
     2281 aataaaggtc caaaacacaa aaagggcgag gaccaaaagg aaataaaata gaaaagtgtt
     2341 catggcggat gttgtttcct ccaagataag caatatttac aatggggctt gttaagaaat
     2401 tgataatgcg caccacacta tggcgtacgc tcaaacacac ttattgcctg cttaatgcgt
     2461 tttaagctct caatttttcc aagaaccccc attatatcaa acacatcggg ccctttcatg
     2521 gcgcccacca aaaacaagcg caaaggcatc ataacagacc ccacaccaat ttctttggtc
     2581 gcgcaccagc gttttacaaa ttcagacagg gattctgttg tgtcccatgg gtgatccgcg
     2641 agcgatgcat ggagctcaga aattatatct acagtaggtt ctttgaccgc gcgtttcact
     2701 ccagccggat catactgtgt tgggggctcg aaaaagaagt ctgaagcctc ccagaggtct
     2761 ttaataaaat gcgcgcgttc tttgaccaga gggacgacgc gggctaagtc aacccgtgat
     2821 gcttctttgt gatttgcttc aagccacgct aaaaaatcag cgatcactat gtcgtcgggt
     2881 tgcttttgaa aatagtgatt ttgaaaccac aaggctttgt tggggtcgaa tttggccccg
     2941 gatttttgta cgcgatccag agagaaattg gttatgagtt ctgctaaaga aaacacctct
     3001 tgctctgttc cagagttcca tccaagcaag gccaaaaggt taaccacagc ctcaggcaag
     3061 tagccttgtt cccgataccc atccagcaca gcgtcttctt gatgccattg aagcgggaat
     3121 acaggaaacc cacctaaaac accatctctt ttactgagtt tccccttccc ggtcggtttt
     3181 aagatcaagg gaaggtgtgc aaactcaggg gcattccagc caaaagcctc atataacaaa
     3241 acatgtaaag caagagaggg caaccattct tctccacgga tcacatgagt gatttccatg
     3301 agatgatcat ccaccacatt agcaaggtga taggtcggca tcccgtcgct tttaaacaaa
     3361 attttatcat caagtacgtt gctgtctacc gtaacctgtc cccggatcag gtcatgacac
     3421 acgacgctcc gcccctgtgg cgacttaaat cgaatgacat agggtgtgcc ttggctgatt
     3481 aaaccctcgg tttgctcagc ggtcaacgcc aaagagtttt gaagcgctaa gcggttttgc
     3541 gcattgtaca taaatgtttc tccggcagcc tcagcgtttt tgcgcaagcc ccccaaaaat
     3601 tccgtggagt caaaagcgta atacgcccag cccgaatcga ttaattgctg aatataggtt
     3661 tgataatatt ttgaacgttc actttgacgg tagggtccaa aattcccggg tttatttggt
     3721 ccctcgtcgt aaggaatgtc aagccaattc aacacctcct caatatagtt ttcggcgccg
     3781 ggaacatagc gggcttgatc cgtatcctct atgcgaagaa caaaggttcc tttgtgtttt
     3841 tttgcaaaga gataattaaa taatgcagtg cgcacccctc caatatgaag aggtccggtt
     3901 gggctaggag caaagcgaac gcgaacagct tgggacacag tcaataattt tggccgtaaa
     3961 gatacaattc taaggcttca tttccgaggg cacccgcggg ttcataataa aaaaccaaag
     4021 cggaggaagc aagctaagaa caatagaggt gggatagcca aagggcagct ctgggcttgt
     4081 agggtgatgg tctaagagct ggtatttttt ttgcgatcga tagtgatggt cgctgtgcct
     4141 ggtcagttca tataataaga tgcggcccat taagtggttg ctgttccaag aatggatttc
     4201 tttaacgggg gcatatcggc ccgacgcttt ttttggacgc attaatccgt agtgctctat
     4261 atagtttgtt gtttctagta aaagcaccgc aacgagcgcc acaattaacc cccataaaag
     4321 ggcgttaaaa ccaaacacga catagaccag aactaaatac aagctctgtg ctaaaacata
     4381 ccacaacaaa tcattgtgcc acaaggcctc gagccctttt ttatgtcgaa caaggcttct
     4441 ttggatctgt aaagcgcttt ttagttgacc aaaaacagaa gtaacccaaa aagaatacac
     4501 gggttgattg tattttgctg tggctggatc ttctggagtt gccgcgtgtt gatgatggcc
     4561 gtagttgtgt tctatataaa aatgcatata cagggcgggg cacaagagta gctttccgag
     4621 gaatcgctct gtttttgtgg ttctgtgacc aagttcatgg gcgacattga ttccattagc
     4681 ccccaaaaca attccgaggg acagggcata ccccaaaata accgctgggt catactgcgg
     4741 cacaatattg gtgtagaaat aaacaaggag gccaaaaaca ataggtaggt tggcataaag
     4801 caagaggtca aaaatccccc acaggctctt ttttgttttt tcttcttggt ccaaattttc
     4861 ttggctttga ggcaataata actccaagat cggtaccaca ccaaagacat aggcaattgt
     4921 ggcaaaaccc cagtatccac ccataaccac agagagggta aatactgcgg gagtagaata
     4981 ggcggttagg tattttaaat cacgggtatt taaagacaca agagcgaaat ttaaattaat
     5041 ttagtggcat gaaatttata taagtgagtg atttccaagc catagagcaa aaactaggtg
     5101 aatttaaaaa aaaattctat ctcagcgacc ttttgcgggg cgggattttc tttttggcca
     5161 taggggcgct ctattttttg ttaacggcct gggttgaaga attactgtgg ttgccaaagc
     5221 ccttgagagc cctaatgttt tgggtttttg tgttggttga agtgggcttg tggttttatt
     5281 ggatttggcc cgcgcttagc gtgctttttg ggattaaagc accaatgagc aatcaagagg
     5341 ccgcacaaat tatcggcaca caaatcccag aagttgggga tcgattaacc aacaccttgg
     5401 atttattaaa acaggcgcaa gacacggagc tggtcttagc cagtattgca caaaaatcta
     5461 aaaccctttc gcctttttat tttaatcaag cgattgacct taaggataat ataaagcatc
     5521 tgcgctggat cattctcccg gtttcggtgt taattttgat ttgggccttt ggagatcttt
     5581 cttctttatt tgagggatac aaccgggtag cggcgtataa tcaagaattt gttcgcccaa
     5641 caccatacca cttaaccttt ttaaatgaag agttaaaagc cagaagcaat caagaaattc
     5701 gtttgcggat tgaagccaaa ggggctgttt tgcctaatga ggtgtttgcg gttgttggag
     5761 accaacgcca aactatggtc ccaagagggt ttggtcaatt tgaactcgtg attcctcccc
     5821 aaaagacgtc ttttgaggtg tattttggca ccgaccaata tcgttctcaa aattatcctt
     5881 ttgagattgt gtacggacca gagattaaag gattttctgt tgagattctt cccccgagtt
     5941 acacgagaat gcgccaacaa agggttgaga acacaggaaa tttcagggcg ttgtcgggct
     6001 cgaaaattct ttggaaaatt aataccgaat ataccgagca aattaggtgg gcgaataaaa
     6061 cagacacttt gtatttcaaa tcggacgtga tcgatggatt cagtctggcc aaaacggtat
     6121 ttggtaatga acaatatgat ttgagcctaa tgaacaacca agtcgggttc gagtcaggcg
     6181 tggcctataa catcgaggtt tatcctgatg agcgaccaaa gattttagtg gaaacccaaa
     6241 gcgacacaat aaatagtgtg gcacatcata aagttttggc gtgggatgac ttcttaattt
     6301 caaaaataga agtggtgtgt tatgccaaag aggatccaaa aaatcaaaga agacagcgct
     6361 tagacgttgt ctctggggca aacacccaga ccctatacac ctttccaaac ggttttgagc
     6421 tcataaaagg aaaggcgtat caatattatt ttgaggcttg ggataacgac ggtgttttag
     6481 gagccaagtc cgcgcggtca aacgtttttg gccatcaaga atcaactatt ctagaggcac
     6541 aggaaaagct gttgagtcaa caaaatgagc aaacgaatca aatcgaaaaa gcgttaaaat
     6601 ccctcgaaga gcaaaacaat caagtcgagg agattgaaca atcgcgccga caaaaagaaa
     6661 ctgtgaattg gcaggatgaa agaagccttg agcgcttgct tgaaaagcag caacagcaac
     6721 ttgataacct agagcagcaa acagaagcgt tgaaaaatac tttagagcga tttaatgaaa
     6781 atcaaccaga tgaagacggt caagccgatg aattaatgga acgtttggag gagcagttgg
     6841 aatcactaaa ggaacaatcc gatagatggg aggagcttcg cgaactgcaa gagcaactgc
     6901 aagaggaaga tcttttggag gagctgtcgc aaaaccaaca acaacagaag gcccaagaac
     6961 aaaatctagc gcggcttgtt gaaatgaccc gaaggttttt tgtcacccaa aaaatgaatc
     7021 aaatcagcaa tcaactcaag gaattagggg agcgacaaga aaaactagca caagatcaat
     7081 ccgacgaaaa aaccttgtcc gaaaagcaac aacagcaagc gcaattaaat aaagaatttg
     7141 aggccattaa aaaggcttta gatctactcg agcaagaaaa tgagaagctc aaacagccca
     7201 tgagcctccc gagagaccct gggggtgaaa tggacatcgc ggcagaacaa caaaaggcaa
     7261 cagagtcttt aaaacaagga gagacgccac aggcgcaaga gtctcaaaaa caggcgggtc
     7321 aaaaaatgca ggaaatggct cagaagttgg gcgctgaaat gcagcaaatg caacaacaag
     7381 ccatgcaaga agacactcag atgctaagac aggttttaga caatcttatt gtattttcat
     7441 tggcgcaaga aggacacatg aaccttggcc aaaagcgcca gctcgggggg tggtctatgc
     7501 ccgaatatat aaacaagcaa aatgatcttc gcgataattt taaccatatt gacgacagtt
     7561 tatatgccct gtcgatgcgc caacccatga ttacagctaa agtcaatcaa tccttgagtc
     7621 aagcgagtta ttatctgggc aggtctttgg aagatttggc agaaacgcgt ttttcaagcg
     7681 ccgccgtggc ccaacaattt gtctttaccc aagccaatga tttggcaaac cttttggatg
     7741 gcgtcgtttc acaaatggaa caaatgtcga tgagtatgcc aggagctggt tcaggacagg
     7801 gatcgggcag ccaaggattt cagctccaag acataattca gcaacagcaa tcgcttcagg
     7861 atcaaggaga gaataaaggg gaacaaggtc agcagtcggg agagggctct tctcaaggag
     7921 gtaagacagg caaagacggg acgcaaggag aatcagatca acaaggcggc caagagggcg
     7981 ctcaacaagg caagggaggc caaagcggaa aggacggcca aaacaaacct caaggggagg
     8041 ggaacagcgg gcaaaatggc aataaggagg gatcatacaa ggacacagat gctgagcgcg
     8101 cggcgcgtta cagcatatat aaagcccaac agcaattacg acaagaattg gaagaccggc
     8161 tcagaaaaca aggcctgcta gacctcaatc ggggggtgct ccaaaaaatg gaggagaacg
     8221 cacaagaagt cttgcgcaac gggattacga atcgcgctaa agccctaatg aaggaaatcg
     8281 attatcagtt gatgaagctt gaggaagcgc agtatgaaca gcaaaaggaa caaaaacgcg
     8341 aatctcaaac caataccagg cgctatgacc cggcattaaa taacccatgg caggacgaga
     8401 gaaggtattt tgaccaatta gacatattaa taaaagacgc attacctttg cagccgtatt
     8461 ataaaaaaca agcagaacga tattttaaaa tacgcaacca ggcgaatgat cagttttgac
     8521 gcacaaaatg aatttacttt agaccaccaa gagcattgga cggcatggtt ggtggaggta
     8581 attaaaatcg agggttttaa tttgggctcc ttgacgtata ttttttgtga tgatgatttt
     8641 ttgctgaaac tcaaccaaga ttttttgaat cacgacaccc taaccgatat aatcactttc
     8701 gacaataatg tgggccgaac cattcacggg gagatttata tttctacaga ccgcgtgatt
     8761 gaaaacagtc aagagtatgg ggtttcagta atgaatgagc tcgcgagggt tgtggtacac
     8821 ggggtgctcc atttatgtgg ctataaagac aaatcggaag aggatgtttt aaaaatgcgt
     8881 gggcgcgaag attattggat tgaaaaactc aacttactga ataacaaata gatataagtg
     8941 tttcacgtga aacattaagt tatggacgcg aattatgatg ttatcgttgt tggggcaggc
     9001 cacgctggat gtgaggctgc cgctgccgct gccaatatgg gggtgaagac actattggta
     9061 acgatgaatt tgcagacgat tgctcagatg tcttgcaacc ctgctatggg aggaattgca
     9121 aagggacaaa tcgtgcgcga gattgatgcc ttaggagggt atagcgggat cgtatcggac
     9181 aacactgcga ttcaatttaa gatgctcaac aaatccaaag gccccgctat gtggagccca
     9241 agggttcaaa gtgatcgcat gcgttttgct gagttgtggc gccttatgtt ggaacagacc
     9301 ccaaaccttg atttctatca ggacatggtg acgagtttgt tgtatgatgg agatagaata
     9361 accggtgttc aaacctcatt aggaatagtt tttaacgcaa gggctgtggt gctaacgaac
     9421 gggacctttc taaatggcct tattcatatt ggagaaaaac aatttggcgg aggtcgtgca
     9481 ggagaaagcg cctcttttgg aataactgaa gatttagtac aacttggttt tgaatcagga
     9541 agaatgaaga caggaacccc tccacgtgtg gatggtcgtt cgttagattt ttcaaaaatg
     9601 agtgagcaac ctggagacga tgttccagaa aaattttctt atacaaatct aactgctcca
     9661 ttaaaaacac agcgctcttg ctggatgtca tacacttctt tagaggtgca cgatatttta
     9721 cgcgaaggtt ttgatagaag cccaatgttt aacggaagaa ttaaaagtat tggaccaaga
     9781 tattgccctt caattgaaga taaaatcaat cgttttgccg ataaagaaag acaccagtta
     9841 tttgtagaac cggaaggctg gacaacttgt gaatattaca tcaacggttt ttcaacttct
     9901 ttgcctgaag atattcaatt taaagcatta cgttcggtgg ctggttttga aaatgtaaaa
     9961 ttttttagac ctggatacgc cattgaatat gattacttcc ctcctacgca gttgcaacac
    10021 actttagaaa ctaaattagt ggaaggattg tattttgcag gtcaaatcaa cggaactaca
    10081 ggttatgaag aagcggcttc tcaaggatta atggccggaa ttaatgcggc tttaaaagtg
    10141 caaaatcgcg aaccatttat attaaaagag acgaagctta cattggcgtt ttaatcg
//
LOCUS       DPUP01000180            4606 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_519,
            whole genome shotgun sequence.
ACCESSION   DPUP01000180 DPUP01000000
VERSION     DPUP01000180.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4606)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4606)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4606
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            1..1030
                     /locus_tag="DHV98_06820"
                     /pseudo
     CDS             1..1030
                     /locus_tag="DHV98_06820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296691.1"
                     /note="catalyzes the synthesis of xanthosine monophosphate
                     by the NAD+ dependent oxidation of inosine monophosphate;
                     too many ambiguous residues; incomplete; missing start;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IMP dehydrogenase"
     assembly_gap    473..501
                     /estimated_length=29
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1106..1618)
                     /locus_tag="DHV98_06825"
     CDS             complement(1106..1618)
                     /locus_tag="DHV98_06825"
                     /inference="COORDINATES: protein motif:HMM:PF03938.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06061.1"
                     /translation="MKHLLLSLLFVFSAVSAQESKVGTIDIDYILGLMPELSAVQEQV
                     TAYQTELSEGYAEKLSTYEKALQNYRDNESLLTLMQKKTKEDSLMVMQNELGQYQQNG
                     NQLLALRQEDFMQPLYTKVGQSLERVAEAGGYTQVLLRDNNVVYIDNRFDLTLAVLKD
                     LGIEVPKEQE"
     gene            complement(1665..1937)
                     /locus_tag="DHV98_06830"
     CDS             complement(1665..1937)
                     /locus_tag="DHV98_06830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06062.1"
                     /translation="MSASEQPQENTPVAMLWDFFGPNRAQTAEHHLIHLNEFATLKQL
                     TPLALEVLQQQERCVVRFVLPWSLVQKLRPILKPHRGQIWTKSSQE"
     gene            2078..>2289
                     /locus_tag="DHV98_06835"
     CDS             2078..>2289
                     /locus_tag="DHV98_06835"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06063.1"
                     /translation="MKYSGLIFAFLSLFATALMAQDDESTLVTLNNRDFTVGEFKQVY
                     FKNLDLVKQQEERSLDEYLDLFIQYK"
     assembly_gap    2290..2359
                     /estimated_length=70
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2360..>3410
                     /locus_tag="DHV98_06840"
     CDS             <2360..>3410
                     /locus_tag="DHV98_06840"
                     /inference="COORDINATES: protein motif:HMM:PF13145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06064.1"
                     /translation="EAAKEQGLDQRQSYLTDFAKYQEQLSRNYVYEDNVTAQMVEQAY
                     KRSKESLKTSHILILCNWDATPQDTLVAYNKAKELRQMVLNTPDNFNDIAAKYLEEPK
                     ADESRGSLDHFTVFEMVYPYESVAYNLKVGEISDLVRTQFGYHIVKLEDRRPVLPKRT
                     VSHIMIGTRFDSLDTAKDRIMEISGLLEKGVAFEDLAKQYSDDKNTGINGGLMRPFTK
                     GDLKAPPFEDAAFALTQKGQISAPVQTRFGWHIIRLEDMGKSPTFEDEEERLTKMVKL
                     GDRAKIVTTAVSQKIKEELGFQAYPYKSSFMAVLNDSVFNRKWRFVPFENKENRLLFT
                     IGTKTYFYNDFGAYLE"
     assembly_gap    3411..3461
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3462..4174
                     /locus_tag="DHV98_06845"
     CDS             <3462..4174
                     /locus_tag="DHV98_06845"
                     /inference="COORDINATES: protein motif:HMM:PF13145.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06065.1"
                     /translation="DFGAYLELRQTKVRPFKQIATFLEMVYEEFETEKVKDYFKQNLE
                     QVNSDYAAIINEYRDGLLIFDVMEKNIWAKAKSDSLGLRNYYEAHKSQYLWKNRVKGA
                     VIQTTTEEDMDEALELLRRGKSPSDVKSQLNQGGALKVVISEGVFEEGSQKLPATYVL
                     KPGLSDVFESPMQYTVIQAEELLPSGVKNYEEVAGAVLSDYQSQLESIWNDELAAKYP
                     AKINKSALRKLRRALKTQ"
     gene            4171..>4606
                     /locus_tag="DHV98_06850"
     CDS             4171..>4606
                     /locus_tag="DHV98_06850"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06066.1"
                     /translation="MMRRTLAIIILLIGFSGCQYFAPEESQKKPLARVNQSYLYLEDI
                     RDLLGANTSAQDSALIIQNQINKWATQQLLIDQAKINLSLDLQADLDELIQQYRTDLY
                     TESYKGKIVSAQLDSVISPQEMQNYYELNRENFKLNEALVQCR"
BASE COUNT         1294 a          899 c         1026 g         1237 t
ORIGIN      
        1 cagaccactg tctcaagtaa tgaccccaca gcccttagtc actgcagcaa aggggaccag
       61 tttggctgat gctgaaatca ttttacaaga aaacaaaatt gaaaaacttc ctgtggtttc
      121 tcaggaccag actttattgg gtctgatcac ctttagagac attacaaaac ttaccttaaa
      181 gcccacggcc aacaaagaca gttttggtcg tttacgcgtc gcagcagctt tgggtgttac
      241 tgctgatgcc gttgaacgcg cctctgcttt ggttcaagct caagttgatg cggtgatcat
      301 tgatacggca cacggccaca ctaaaggggt tgttgaggta ttacaagcag tcaagacgaa
      361 gtttcctgat cttgatgtcg tggtcggtaa tattgccacg gtagaggcgg cgcaatacct
      421 tgtcgaggcg ggtgcagacg cggtaaaggt cggaattggc ccggggtcaa tannnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nagtcggatt ccctcagttt tctgccgttc ttgaagtcgc
      541 caatgccatc aaaggaactg gggttccggt tatcgctgac ggaggaattc gctacacagg
      601 agatattccc aaagccatag cggccggtgc ggattgtgtc atgctcgggt ctttactcgc
      661 cggaacgaag gagtctcccg gggaaacagt aatttttgaa ggaagaaaat tcaagactta
      721 tcgcggaatg ggcagtgttg aggcgatgaa acacggttct aaagaccgtt acttccagga
      781 tgtggaagat gacatcaaaa agcttgtccc agagggaatc gtgggccgtg taccctataa
      841 aggggacctg gtcgaaagta tgactcaatt tattggtggt ctgcgcgcag ggatgggtta
      901 ttgcggcgct aaagacgtgc caacacttaa agaaacaggg cgctttatta aaataacctc
      961 atcggggatt cacgaaagtc acccccacga tgtaaccata accaaagaag caccaaatta
     1021 ctcgcgctaa ttcgggtact gcccaattgc tttacgatga attgtctgga gttggctttt
     1081 gcggaactgc gctcaggcga ataagctatt cttgttcttt gggaacttct atgcctaagt
     1141 cttttaagac cgctagagtc aggtcaaatc gattgtctat gtaaaccaca ttgttatccc
     1201 gcaacaagac ttgagtatat cctccagcct ctgccacgcg ctccagcgat tgccccacct
     1261 tagtataaag cggctgcata aaatcttctt gtcttaacgc caagagttga ttcccatttt
     1321 gctgatattg ccctagttca ttttgcatta ccatcaaaga atcttccttc gtttttttct
     1381 gcatcagggt gagcaaagat tcattgtctc gatagttttg taaggccttt tcataggttg
     1441 agagtttttc tgcataaccc tcactgagct cggtttgata ggccgtaact tgctcttgaa
     1501 ccgcagagag ctcaggcatt aagcctaata tataatcgat gtcaatggtg ccgaccttac
     1561 tttcttgtgc gcttaccgct gagaaaacaa ataaaagact aagtaaaaga tgtttcatgg
     1621 ttgaagtttt atgcaagtaa ataaaaaatt gaaaattaca gttactattc ctgcgatgat
     1681 tttgtccaaa tttgaccccg gtgtggtttg agtattggtc tcagtttttg gaccaaggac
     1741 caaggtaaaa caaaacgtac cacgcagcgc tcctgctgtt gcaatacttc tagggctaaa
     1801 ggcgttaact gctttaaagt ggcaaattca ttcaggtgaa ttaaatggtg ctctgcggtt
     1861 tgcgctctgt tggggccaaa aaagtcccag agcatggcta ccggagtatt ttcttgaggc
     1921 tgttcagatg cggacatatt tgctttttgg gtgaggcaaa gataagattt atgggcgtta
     1981 taatcgattt atacggcact gaaatcctcg gccaaagccc ttgaattaac cgttagaatt
     2041 gttaattttg tcccacttct aaaaaaatga aaatgttatg aaatacagtg gactaatttt
     2101 tgcttttttg agcttattcg caacggcgct catggcacaa gatgatgaaa gcacgttagt
     2161 gactctgaat aatcgtgatt ttaccgtcgg tgaatttaaa caagtctatt ttaaaaactt
     2221 agatctggtt aaacagcaag aagaacgatc cctcgatgag tatttggatt tatttattca
     2281 atacaagagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnt gaagcggcga aggaacaagg tttggatcaa agacaatctt
     2401 atctaacgga ttttgccaag tatcaggagc aattgtctcg caattatgtc tatgaggata
     2461 atgtgacggc acaaatggta gaacaggcct ataaacgaag taaagaatct ttaaagacgt
     2521 cccatatttt aattctttgc aactgggacg caacgccaca ggatacttta gtcgcctata
     2581 ataaggccaa agagctgcgt caaatggttt taaatacacc ggataatttt aatgatattg
     2641 ccgcaaagta tttagaagag cccaaagcag atgaaagtcg tggttcactg gatcacttta
     2701 ctgtttttga aatggtttac ccttacgaaa gtgttgcgta taatctcaag gtgggtgaaa
     2761 tctctgattt ggtgcgcact caatttggtt atcatattgt aaaattagaa gatcgtcgcc
     2821 ctgttttacc caaaagaaca gtttctcata tcatgatcgg tacgcgcttt gattctctgg
     2881 atacggccaa ggaccgcatt atggaaattt caggtttgct tgaaaagggc gtggcttttg
     2941 aagatttggc caagcaatac tctgatgaca agaataccgg aataaacggt ggcctgatgc
     3001 gcccatttac caaaggagac cttaaagccc cgccctttga ggatgcggcc tttgccttaa
     3061 cccaaaaagg gcaaatatca gctccagttc aaacgcgatt tggctggcat attattcgtc
     3121 ttgaggacat gggtaagtcg cctacttttg aagatgaaga ggagcgtctc accaaaatgg
     3181 ttaagttagg agatcgtgca aaaatcgtta caaccgccgt gagtcaaaaa attaaggagg
     3241 agttagggtt ccaggcctat ccttacaagt cctcatttat ggcggttctc aatgacagtg
     3301 tctttaatcg taaatggcgt tttgttccct ttgaaaacaa agaaaataga ctccttttta
     3361 ctataggtac gaaaacttac ttctacaatg acttcggtgc ctatttggag nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn natgactttg gtgcttattt
     3481 ggagttacgt cagaccaaag tacgtccgtt taagcaaatt gcaaccttcc ttgaaatggt
     3541 ttacgaagaa tttgaaaccg agaaggtgaa ggattatttt aagcaaaatt tggaacaggt
     3601 taattcagat tatgcagcca ttataaacga ataccgtgat gggcttttaa tatttgatgt
     3661 catggaaaaa aatatttggg ccaaggccaa atctgattct ttgggactgc gcaactacta
     3721 tgaagcgcac aaaagccaat atctatggaa aaatcgggtt aaaggtgcgg tcattcaaac
     3781 cacaaccgaa gaagacatgg acgaagcact tgagctattg cgtcgcggta aatcgccaag
     3841 cgatgtcaaa tctcagctga atcaaggagg ggccttgaag gttgttattt ccgaaggggt
     3901 gtttgaagaa ggatcgcaaa aacttcctgc gacttatgtt ttgaagccag ggctgtccga
     3961 cgtttttgag tcgcccatgc agtataccgt cattcaggca gaagaacttc ttccttccgg
     4021 agtaaaaaat tacgaagagg tagccggtgc tgtacttagc gattatcaaa gtcaactaga
     4081 gtccatatgg aatgatgaat tagccgctaa atatcctgcc aaaattaaca aaagcgcgct
     4141 gcgcaaatta aggcgtgcgc taaagactca atgatgaggc gtactttagc gataatcata
     4201 ttgctcattg gtttctcggg atgccaatat tttgcgccag aggagagcca aaaaaagcct
     4261 ttagccaggg tcaatcaatc ttatttatac ttggaagata ttcgcgactt gctcggggcg
     4321 aatacctcgg ctcaagacag cgcattaatt attcaaaacc agatcaataa atgggcgaca
     4381 cagcaattac tcattgatca ggccaagatt aacctcagtt tggatttgca ggctgatttg
     4441 gatgaactta tccagcaata ccgcacggat ttatacaccg aatcctataa aggcaaaata
     4501 gtttcggctc agctcgactc ggtgattagt cctcaagaga tgcaaaatta ttacgagctc
     4561 aatcgagaaa attttaaact caatgaagcc ttggtgcagt gtcgtt
//
LOCUS       DPUP01000181            4278 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12553,
            whole genome shotgun sequence.
ACCESSION   DPUP01000181 DPUP01000000
VERSION     DPUP01000181.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4278)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(1..1488)
                     /gene="ilvC"
                     /locus_tag="DHV98_06855"
                     /pseudo
     CDS             complement(1..1488)
                     /gene="ilvC"
                     /locus_tag="DHV98_06855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007811503.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
     assembly_gap    519..568
                     /estimated_length=50
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1498..2031)
                     /gene="ilvN"
                     /locus_tag="DHV98_06860"
     CDS             complement(1498..2031)
                     /gene="ilvN"
                     /locus_tag="DHV98_06860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HCK06067.1"
                     /translation="MKEEKNLYTVSIYTEDNVGLLNRISAIFQRRHINIESLSSSVSE
                     IEGVSRFTLLVHITEDQMRKILGQIEKQVEVIKAYYHTDEQTIYQESCLFKVKSDLLF
                     EERQIQNIIKDSNARIVTVNRDFFVLEKSGRRHEVDLLYRELKPFGIMQFVRSGRIAV
                     TKEKMNITDLLAQFAQA"
     gene            complement(2045..3778)
                     /gene="ilvB"
                     /locus_tag="DHV98_06865"
     CDS             complement(2045..3778)
                     /gene="ilvB"
                     /locus_tag="DHV98_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HCK06068.1"
                     /translation="MSVQTLVKSKVSQEETLRISGSEAVVRCLIAEGVDVLYGYPGGA
                     IMPVYDALYKFQDQIHHVLTRHEQGAAHAAQGFARISGRVGVAIATSGPGATNLVTGI
                     ADAQIDSTPLVCITGQVGVHLLGSDAFQETDIVGISTPVTKWNHQVTCAEEIPEVLAK
                     AFYIARSGRPGPVLIDITKNAQFEMLDFQYKPCTGIRSYTPEPKIKQEDLSAAAELLN
                     GAKKPFLIWGQGIILSQAEKELKAFIEHTGIPAAWTILGASAIDTDHPLNVGMVGMHG
                     NYAPNMLTNECDVLLAVGMRFDDRVTGNLETYAKQAKIIHIEIDPAEVDKNVKTDVAV
                     LGDAKKALMALRELCAPNNHADWLNRFAELHGIEEEKIIHKDLYPTKPGLTMGEVIRS
                     INEYTQGQAAVVTDVGQHQMIACRYAEFKRTKSNITSGGLGTMGFALPAAIGAKMAAP
                     DRTVVAVIGDGGYQMNIQELGTIFQTKAAVKIVLLNNNFLGMVRQWQQLFFDKRYAST
                     ELINPEFGLIANAYHIPSKKVTQREDLNEAVAEMLTHQGPYFLEVVVEPEANVFPMIP
                     SGASVSEIRLS"
     gene            complement(3789..>4278)
                     /locus_tag="DHV98_06870"
     CDS             complement(3789..>4278)
                     /locus_tag="DHV98_06870"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013307087.1"
                     /note="catalyzes the dehydration of
                     2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate
                     in valine and isoleucine biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HCK06069.1"
                     /translation="GKEGHRFVGRAKVFDSEYAANEGIGAGRVKKGDVVVIRYEGPKG
                     GPGMPEMLKPTAAIIGAGLGKDVALITDGRFSGGTHGFVVGHITPEAQEGGAIAFVQD
                     GDQITIDAESNSITLDISDQELHKRQSHWQAPKLKFDRGVLYKYARTVASASKGCVTD
                     EF"
BASE COUNT         1081 a         1083 c          883 g         1181 t
ORIGIN      
        1 tctatgggat gctcagcaat ttcttggttg acctgaatca aggctttatt ctctatatca
       61 tgaccataat ggcctaaacc aacatcttca ggcacaacct gggtcttcat aaaatccgtc
      121 aaaagtggtt ttgcagcatg gtcaaataga taacaaccat attcggctgt gtctgaaata
      181 attctattca tttcgtagag cttttttcgc gccacggtat tggcgatcaa gggcagctca
      241 tggagtgact cgtaataagc cgattcttgg atgatccccg ccgacaccat agtctcaaag
      301 gccagttcaa cccccgcttt gacaaaggcc atcatcaaaa tacctcgatc aaagtaagtc
      361 tgctcaggcc atgttgcatt ttgggcctgg gtcttttcaa aagcagtcgc cgcagtcgcc
      421 gcccgccatg tgagcaagtc gtgatcatca ttggtccagt cttccatcat cccgcgtgaa
      481 aaagccccac tgataatatc atccatatgc ttttgaaann nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnat atcatccata tgcttttgaa atagcggggt
      601 ccaaatcgat ttcaaggttt ctgacagttc attgactctt aatttagccc cattggtcaa
      661 tcgattcatc atgtgcgtta ttcctccatg cttaagcgct tcagtttgca cctcccagcc
      721 gtattgaact tgtcgcgcgg cttcctctgg agccacaccc aagcccacca tatgatcaaa
      781 tattaaaata gagccggttt gcaagacacc acacaatatg gtttgctcac ccatcaaatc
      841 actttttacc tcagcgacaa aggaggaggc caaaacacca gcgcggtggc ctccggtagc
      901 ataagcatag gctttggcct gagcccaccc ttttccgtgt ggatcattct gcggatggac
      961 cgcaataagg gtgggcaccc caaatccacg tttatactct tctcgaacct ctgaaccggg
     1021 acactttgga gcgaccatga ttacggtcaa atcttcgcga accttcatcc cttcctcaac
     1081 gatattaaat ccatgagaat acgataaagt ggctccttgt ttcatcagcg gcataacgcg
     1141 cttgatgact cctgtatgtt gtttgtctgg ggttaagtta cagaccaaat ctgcctctgg
     1201 aatcaaagat tcaaaagtcc ctgcgtcaaa tccattcgcg gtggcgtttt gaaaagaagc
     1261 acgcttttga tcgatggcct cctgtcttag cgcgtaggcc acgtttaaac ccgagtcgcg
     1321 catattcagg ccttgattga gtccttgagc cccacagccc aaaatgacca cttttttccc
     1381 ggccaaagcc ttagtgccct catcaaattc atccgcatcc ataaatcggc attgacccaa
     1441 ttgggccagt tgttctctta agtttagggt attaaaataa tttgtcatgg ttgagattta
     1501 tgcctgggca aattgagcca acaggtccgt tatattcatt ttttctttag ttacggcgat
     1561 acggccagaa cgcacaaatt gcatgatgcc aaaaggtttt aactcgcggt atagcaggtc
     1621 tacctcgtga cgacgtccgg acttttccag gacgaagaaa tctcggttta cggtcacaat
     1681 gcgggcattg ctgtctttaa taatattttg gatttggcgc tcctcgaaga gcaaatcact
     1741 ttttacctta aacaaacaag actcttgata tatcgtttgc tcatcggtgt ggtaataggc
     1801 cttaatcacc tcaacctgtt tttcgatttg ccccaatatt ttgcgcattt ggtcctcggt
     1861 aatatggact aacaaagtaa atcgactcac gccctctatt tctgagaccg aggaactcaa
     1921 actttcaata ttaatatgac gcctttgaaa gatcgccgaa atgcgattaa gcagaccgac
     1981 attatcctct gtatagatgg aaaccgtata taaatttttt tcttctttca taatcacatg
     2041 gcaattaact gagtctgatc tccgatactg aggcccctga aggaatcatg ggaaacacat
     2101 tggcctcagg ctctacgacc acttctaaaa aataagggcc ctgatgggtg agcatctcgg
     2161 ctacggcctc gtttaaatcc tctctttgcg tcaccttttt ggacggaatg tgatacgcgt
     2221 tggcaatgag tccaaactca ggattaatga gttccgttga ggcgtagcgc ttatcaaaaa
     2281 acagttgttg ccattggcgc accataccca aaaaattatt atttaagagc acaattttta
     2341 cggcagcttt ggtttgaaaa attgtcccca attcttgaat attcatttgg taaccgccat
     2401 cgccgataac agcaaccacg gttcggtctg gagcggccat ttttgcacca atagccgcgg
     2461 gcaaggcaaa gcccatggtc cccaagcctc ctgaagtgat attgcttttg gtccgcttaa
     2521 attcggcata gcgacaggcg atcatctggt gctgtcctac atcggtgaca accgctgctt
     2581 gaccctgggt gtattcatta atgcttcgaa taacctcgcc catggtcaga cctggtttgg
     2641 tcggatataa atccttatga atgatttttt cttcttcaat accatggagc tcggcaaatc
     2701 gattgagcca atccgcatga ttattcggcg cgcacaattc gcgcaaggcc attaaagctt
     2761 ttttggcatc tccaaggacc gcaacatctg tttttacatt cttgtcgacc tctgcaggat
     2821 caatttcaat atggataatt ttagcttgtt tggcgtaggt ctctaaattt cccgtcacac
     2881 ggtcatcaaa tcgcatcccc acagccaaca gcacatcgca ttcgttggtc aacatattgg
     2941 gcgcataatt gccatgcatc cccaccatgc ccacattaag tgggtgatcg gtatcgattg
     3001 ccgaagcacc gagaatggtc catgctgctg ggattccagt atgctcaata aaggccttta
     3061 actccttttc ggcttgagat aaaataatcc cctgtcccca aatcagaaat ggtttttttg
     3121 ccccgttgag taactcagcc gcggcgctta aatcttcttg tttgattttt ggctcaggag
     3181 tataactgcg aatccccgtg caaggtttat actggaaatc gagcatttca aactgagcgt
     3241 ttttggtaat gtcgatcagc acaggaccag gacgaccact tctggcaata taaaaggcct
     3301 tggccaacac ttcaggaatc tcctcggcac aagtcacttg atgattccac ttggtcaccg
     3361 gtgtggatat ccccactata tcggtttctt gaaaagcatc actaccgagt aaatgcactc
     3421 ccacttggcc ggtaatacaa accagtggtg tggagtcaat ttgcgcatcg gcgattcccg
     3481 taaccaggtt tgtggcgcca gggccagaag tcgcaatggc cacaccaacg cgtccagaaa
     3541 ttctggcaaa accttgagcg gcatgtgctg caccttgttc atgacgggtt aaaacatgat
     3601 gaatttgatc ttgaaattta tagagcgcgt cataaacggg catgatcgct cctcctgggt
     3661 atccgtaaag gacatcaacc ccttcggcaa taaggcaacg cactacagct tcacttcctg
     3721 aaattctgag ggtctcctcc tgggaaactt tactcttaac taaggtttgt acggacataa
     3781 tcttttgttt aaaattcgtc agtaacacaa cccttggagg ccgaagctac tgttctggca
     3841 tacttgtata atactcctcg atcaaatttc aattttgggg cttgccaatg ggattggcgc
     3901 ttatgtaatt cctgatccga gatatccaga gttatgctat ttgactcagc atcaatggta
     3961 atttgatccc catcttgaac gaaagcaatg gctccgccct cttgggcttc aggagtaatg
     4021 tgccccacaa caaaaccgtg agtgcctccg gagaatcgac cgtctgtgat caatgccaca
     4081 tctttgccca ggcctgcacc aataatggcc gcggttggtt ttagcatttc gggcatcccc
     4141 ggcccccctt ttggaccttc atagcgaatc acaaccacat cgcctttctt aacccgtcct
     4201 gcaccgatgc cctcattggc ggcatactca ctatcaaaga ccttagcgcg cccgacgaat
     4261 cgatgccctt ctttccca
//
LOCUS       DPUP01000182            2579 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_35014,
            whole genome shotgun sequence.
ACCESSION   DPUP01000182 DPUP01000000
VERSION     DPUP01000182.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1437)
                     /locus_tag="DHV98_06875"
     CDS             complement(<1..>1437)
                     /locus_tag="DHV98_06875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc carboxypeptidase"
                     /protein_id="HCK06070.1"
                     /translation="PENHQRIEQIKSDRQRLINQNNKVLDTDQLPIVLYQGFSIHGNE
                     PSGSNAALLYAYYLAAAQGPAMEKALTESVILLDPSFNPDGLQRFSTWANMHKSNKIN
                     PDPNDREYAEVWPGGRTNHYWFDLNRDWMPSQLPESQARIKTFHQWYPNILTDHHEMG
                     TNSTFFFQPGIPTRTHPLTPKLNQELTRAVGRYHARALDKIGSLYYSEEDYDDFYYGK
                     GSTFPDIHGGVGILFEQASSRGHAQESDNGILTFPFTIRNQFTAALSTLEAGIALKKD
                     LINYQSDFYHQMRKNKGSDEVFLIQDTHDTGKLKAFLALMDRQHIQAYRLKAPVRIDG
                     QSYLPKSTIAIPKDQTQSTLIEAMFERRTQFQDSLFYDISAWSFPLAFNLEHTSARLK
                     DLELAEQLNPEHLNTETNVLNKSYAYILEWEDYYSPKTLNYLLENNIRVKVAMQPFAL
                     GKQNFDYGSLMIPAHNQEKSPDEIHNLM"
     assembly_gap    1438..1617
                     /estimated_length=180
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1618..1828)
                     /locus_tag="DHV98_06880"
                     /pseudo
     CDS             complement(1618..1828)
                     /locus_tag="DHV98_06880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867626.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1980..2351)
                     /locus_tag="DHV98_06885"
     CDS             complement(1980..2351)
                     /locus_tag="DHV98_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010517543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HCK06071.1"
                     /translation="MNQQFSLNKEEIYSKVMRAGRRTYFFDVRETKAGDYYLTITESK
                     KFTNDDGSFHYKKHKIYLYKEDFVEFQEHLVDMIDYVIDAKGDEVISERHQKDYNPED
                     YDEHKHSSSSSSFTDVNFDDI"
BASE COUNT          637 a          478 c          521 g          763 t
ORIGIN      
        1 tccatgagat tatggatctc atcaggggat ttttcctgat tatgagcagg aatcattaga
       61 ctgccataat cgaaattttg tttccctaag gcaaatggtt gcatggcgac tttgacacgg
      121 atattatttt caagcaaata atttaaggtc tttggactgt aataatcttc ccattctagg
      181 atataggcat agcttttatt caaaacattt gtttccgtat tgagatgttc agggtttaat
      241 tgttcagcca gctccaggtc ttttaatctt gcactggtgt gctccaaatt aaatgctaga
      301 ggaaaactcc aagcgcttat atcataaaat aagctgtcct gaaattgtgt tctgcgctca
      361 aacatggcct cgataagcgt gctttgggtt tgatccttag gtatggctat ggtagatttt
      421 ggtaggtaac tttggccgtc gatacgcacc ggcgctttaa gtcgataggc ttggatatgc
      481 tggcgatcca tcagggcaag aaaagccttt aattttcccg tatcatgagt atcctgaatt
      541 aaaaagacct catcactacc cttattttta cgcatctggt gataaaaatc actttggtag
      601 ttgattaaat cttttttcaa agcaatgccc gcttcaaggg tggataatgc cgccgtaaat
      661 tgatttctga tggtaaatgg aaaagttaaa ataccattgt cactctcttg agcatgaccc
      721 ctcgaggagg cttgttcgaa caaaataccg accccgccgt gaatgtcggg aaatgtcgat
      781 ccttttccat agtaaaaatc atcataatcc tcttcagaat aatagaggct cccaatttta
      841 tcgagtgccc tggcgtgata tcgacccaca gcgcgcgtta gctcttgatt taattttggc
      901 gtcagtggat gggtccgcgt cgggatgcct ggctgaaaaa agaaggtcga gttggtcccc
      961 atctcgtggt gatccgtcaa aatattagga taccattgat gaaatgtttt aatgcgcgct
     1021 tggctctcag gaagctggct gggcatccaa tctctattga ggtcaaacca ataatgattg
     1081 gtgcgccccc cgggccaaac ctcagcgtat tctctgtcgt taggatccgg gttaatcttg
     1141 ttgcttttat gcatattagc ccaagttgaa aaccgctgta gtccatcagg gttaaacgag
     1201 gggtccaata gaatcacact ttctgtgagc gctttttcca tagctgggcc ctgtgccgcg
     1261 gcgaggtaat aggcgtagag tagggccgca ttactgccgc tgggttcatt gccatgaatt
     1321 gaaaatcctt ggtacaagac tatgggtaat tgatctgtgt caaggacttt attattttga
     1381 ttgattaagc gctgacggtc tgattttatt tgttcgatcc gctggtgatt ctctggtnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncgg
     1621 tgagcagcca tagcggtctt ccttcgtaag ttgtgcctcg ttgttcaatg gtcatccgtg
     1681 gactgcgttc ggccaaaacc tccatatatc tcgagagtcg atcatgagtc acatgccaag
     1741 caccgacttg atgacccacg acttcctcag gcgttggaat ttctgggtta tagctaatgt
     1801 cttgtggcag gtagtaccct aaatcaagat tctgcccttg gattaaaagg ctacaaaaca
     1861 gggtcaggct taaaaataaa tattttgtca tatcgggaga tttacgattt tctaagataa
     1921 aaaaaccgcc acaaatgggg cggtttataa tatagaatcc ttgtatggtc aaaaaggcct
     1981 tatatatcat caaaattaac atcggtaaaa gaggaacttg atgaactatg cttgtgttcg
     2041 tcgtaatctt ctggattgta gtctttttga tggcgttcgc tgatgacttc atcacctttg
     2101 gcatcgatga cgtagtcaat catgtctact aggtgttcct ggaattctac aaaatcttct
     2161 ttatagagat aaattttatg ctttttgtag tgaaacgagc catcgtcgtt tgtaaatttt
     2221 ttactctcgg taatggttag ataatagtca ccggcttttg tttcgcggac atcaaaaaaa
     2281 tacgtcctgc gcccagcacg cattactttt gagtaaattt cctctttatt taaggagaac
     2341 tgttgattca ttttagaagg tattattgga aatggtttaa ctcaaaaatc taaaaaaaaa
     2401 ccaaatcctc aaaaatttta agataattct ttttcgatga gttgcttctc ataaagcgct
     2461 ttgtagtagc ctggagtttt tattagctca ttatgagcgc cttgctgaat tattcgccct
     2521 tggtccataa cgagaatctt tgtcgcattt tttaccgtag aaacgcgatg actcacaat
//
LOCUS       DPUP01000183            5458 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9636,
            whole genome shotgun sequence.
ACCESSION   DPUP01000183 DPUP01000000
VERSION     DPUP01000183.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5458)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5458)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(12..1574)
                     /locus_tag="DHV98_06890"
     CDS             complement(12..1574)
                     /locus_tag="DHV98_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06072.1"
                     /translation="MNLQRCLSNLFLHRLNAGSIPSTKRFSLSHLLSFTFAVMSWINI
                     DAQEVQLRGVVIDSLAPLGFANVIATDAESGKLAGYSITNNDGRYAFSLNSEASYILR
                     ASFLGYETQEKRLNVGADIDALTLDFTLRAETAQLDGVEIVYEMPVTVKGDTIVYNAD
                     SFNRGNEKKLGDVLENLPGVEVNDDGEIQVEGKTVQKVMVEGKDFFDGDSKLATKNIP
                     ANAIDKVEVLRNFSEVGQMRGVTNNQDNVAINIKLKEGKKNFWFGEVTAGSGVDADVD
                     PRYLLHPKLFYYHPEYSLNVITDLNDIGEVPFTWRDFFNFTGGFRNFNSGGGTRFNIQ
                     ESDLGFAVGQNNRAAAIGTKFAAANFSYAASQTLDLSGFGIASENTTSIISNTINQFI
                     LSGIQEQTQVQSEQNNQLGMIKFSGIYKPDARLQVDYDILLKASNQRQDDATFSAFAD
                     QTNDIVERKENRPTSIEQNINAYYTASENDIFAGQFQHMLRSEDPFYNAITDLLPFAG
                     ILPVSQEGGRFD"
     gene            complement(1620..2493)
                     /locus_tag="DHV98_06895"
                     /pseudo
     CDS             complement(1620..2493)
                     /locus_tag="DHV98_06895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782503.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GLPGLI family protein"
     gene            2762..3520
                     /locus_tag="DHV98_06900"
     CDS             2762..3520
                     /locus_tag="DHV98_06900"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06073.1"
                     /translation="MFAQTLEQNKGLLLNSDKQTVLSAADQIFGYDTYEQFYWADKNT
                     LYKSGNKGDFEFQELMLGPIAQIDFQNPLTVLVFYRETNTVLFLDNRLNEKRRIDFNL
                     IEEFPQVQWVYNAGSNRLWLMDQNSQSLWGYDTQSMRVVFQSLPLPDLIELKCRYNDC
                     IAQTFEELIWISLYGTITKRQVLSDGKLMGYSQEHVVVTQEEGLFDLKSNQAWHFPEI
                     LPENQINGLQLTQDFLYIYVSNVIRRYALTQLKH"
     gene            3526..4140
                     /locus_tag="DHV98_06905"
     CDS             3526..4140
                     /locus_tag="DHV98_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014083091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HCK06074.1"
                     /translation="MHVAVAGNIGSGKTTLTGLLSKHYKWKAHYEEVEHNPYLDDFYN
                     QMERWSFNLQIYFLNSRFRQIIDIRENGKEVIQDRTIYEDAHIFAPNLHAMGLMTNRD
                     FENYRSLFDLMESFTKGPDLLIYLRSSIPNLVKQIHKRGREYENSISIDYLSRLNERY
                     EAWIHNYDKGNLLIIDVDELDFVDNQEDLGAVINKIDAELHGLF"
     gene            complement(4302..>5458)
                     /locus_tag="DHV98_06910"
     CDS             complement(4302..>5458)
                     /locus_tag="DHV98_06910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HCK06075.1"
                     /translation="AGLAVGMKSTFWSVLLFAAAIYGSYELAGFYGVALAASAMMATT
                     AMQLAIDAFGPIADNAGGIAEMSELEDHVRERTDILDSVGNTTAAVGKGFAIASAALT
                     ALALFAAYVTFTGIDGINIFKADVLAALFVGGMIPVVFSAMAMKSVGKAAMEMVQEVR
                     RQFREIPGIMEGTGTPEYGKCVEISTKAALKEMLLPGLLTIVTXAGVCVSGVMWAIFQ
                     NNAGGAWDNAKKSFEAGVEINGEMTYKGSDAHKAAVTGDTVGDPFKDTSGPSMNILIK
                     LTCLVGLVIAPILGGHHEASSTEAPHAMMFVSEDYDEKVTVIMESEGDTFKATVTTTT
                     SVNGELQESVQVFKGTEEEVRTEVEALEAMKIKIDEVDGEKVIEVEVEQE"
BASE COUNT         1558 a         1314 c         1023 g         1559 t
ORIGIN      
        1 gctcttccga tctaatcaaa gcggccccct tcttgactca cgggaagtat cccggcaaaa
       61 ggcaaaaggt ccgttatcgc gttataaaag ggatcctccg agcgaagcat atgttgaaac
      121 tggccggcaa aaatatcgtt ctctgaggcc gtataataag cattgatgtt ttgctcaatt
      181 gaggtgggac gattttcttt gcgctcgacg atatcatttg tttgatccgc aaaggcagaa
      241 aatgtcgcat catcttgacg ctgatttgag gcctttaaca aaatatcata atcgacttgt
      301 aaacgggcat caggtttata aatcccacta aattttatca tccccagttg attgttctgc
      361 tcggattgaa cctgagtttg ctcttgaatg cccgacaaaa taaactggtt tatggtattg
      421 gagataatgg acgtcgtatt ttctgaagcg ataccaaatc cacttaaatc caaagtctga
      481 cttgccgcat agctgaagtt tgcggcggcg aacttcgtcc cgattgccgc cgctcgatta
      541 ttttggccaa cagcaaaacc cagatcactt tcttgaatgt taaatcgggt tcctccaccg
      601 ctgttaaaat ttctgaatcc ccctgtaaag ttgaagaaat ctctccaggt aaagggcacc
      661 tcaccaatat cgtttaaatc tgtaataaca ttcaaactat actcagggtg ataataaaac
      721 aacttggggt gcaataaata gcgaggatcc acgtcggcat ctacaccact tcctgcggtg
      781 acctcaccaa accaaaaatt ctttttgcct tctttgagct tgatattgat cgccacatta
      841 tcttgattgt tggtcacccc gcgcatttga cctacttcac tgaaattacg caatacctca
      901 accttatcaa tagcattggc gggtatgttt ttcgtggcta gtttagaatc tccatcaaag
      961 aagtcctttc cttcgaccat gactttttgg accgttttcc cttcaacctg aatttcaccg
     1021 tcatcgttga cctcaactcc aggaagattc tccaggacat ctccgagttt tttctcgtta
     1081 cccctattga atgaatccgc attgtaaaca atcgtatccc ccttgacggt gaccggcatc
     1141 tcatagacaa tttcgacccc atcgagctga gccgtttcag cccttagcgt aaaatcgaga
     1201 gttaatgcat caatgtctgc gccaacgttt agcctttttt cttgagtttc ataccccaaa
     1261 aaactggccc gaagaatata gctggcctcg gaattgaggg agaaagcata tcgtccgtca
     1321 ttattcgtaa tagaatatcc tgctaatttc ccagactcag catcggtggc aataacattg
     1381 gcaaacccca atggggcaag actgtcaatg accacacccc gaagttgcac ttcttgagca
     1441 tcaatattga tccagctcat taccgcaaaa gtaaaactta agaggtgact caatgaaaaa
     1501 cgcttagtcg atggaatcga ccccgcgttc aatcggtgca aaaataaatt ggataggcag
     1561 cgctggagat tcatatcgaa aggaaactta aagtagacta tttgttttat tgttcatgct
     1621 tattccccac gaccacgacg gccagaacgg ttgcgccaat tgtcgcgcat ctcttgagtt
     1681 ttctctttga cgataacctc aaattcatct tgagtaacca cagccccttt gctcggcgcc
     1741 tcaatgacag ggagatcctt tggattcatt acaatttttg aacacaataa ggtggtccga
     1801 tcggcattga gctccagtat aagccccggt aagccagcat actctcctgg tccatgaccc
     1861 agcggtattt gcggcgtaaa ccacgcggtc acttcgatgg tttttggcat ttctaattca
     1921 tcaattgggt cagacttaag actatctgac ttttgttttt ctttatcctt atccgtgtct
     1981 tgagcctgtc gatctcgacg acgcatcata ctaaactcgt tggctttgac ctgcttgaca
     2041 gcgcgggcct tgatggccaa atacgcgcca atcatcttcg tctcatcggt gatctcccat
     2101 tctagtgcag ggatttcatc tttgattaaa aaactcttcc caaagaaatc ttgcgcttgc
     2161 acaaaggcac tgtcttccaa gttcttatat tgaatcccag gagtcgcact ggccatcatc
     2221 acggcgaatc cgcgaccttg agtttctaca tcaagagagg cctcttcctc ataaacagac
     2281 tcacttccat taaaagtcaa gatataggtc ttttctagaa aggacttcat nnagtgccat
     2341 gatctgcttt ttcatgtctt cgctcattcc ttcgcggccg aaattgtcca tatcgactgt
     2401 ggttttggac tgataaaaag cttgtcctga aaaattctgt gcttgaagtc caagactaaa
     2461 aaggaggctc aatattaaaa agtatatttt catttgctta tttatttttt ttgataaaat
     2521 taaatctata aaatccagtt attctcttgg accttaagtt aagttaaagg tttaattgga
     2581 acgtttaatg caccccttta ttcataatta aattcaggag ccgaatttaa ataatttaac
     2641 ccatacctcg tgttaattgt gtgccaataa agcagttttt gttttgtacc ttgttgagtc
     2701 taaggcatca tgtttcatga gatcgatttt actttttata ataattaccc tgacggcccc
     2761 catgtttgct cagacccttg agcaaaataa ggggttattg cttaattctg acaagcaaac
     2821 agtcttatct gccgcagatc aaatttttgg gtacgacact tacgagcaat tctattgggc
     2881 cgacaaaaac accctctata agtctggcaa taaaggcgat tttgaattcc aagaactaat
     2941 gttaggacct attgctcaaa tcgattttca aaatccacta accgttttgg tcttttatcg
     3001 cgaaacaaat accgtccttt ttttggataa tcgtttgaac gaaaaaagac gtattgactt
     3061 taatctgatt gaagaatttc ctcaggtgca atgggtttat aatgccggca gcaatcgctt
     3121 gtggctcatg gatcaaaaca gccaaagtct atggggatac gacacccaat ccatgcgcgt
     3181 agtttttcaa agtcttcctt tgcccgatct tatagaatta aaatgccgct ataacgactg
     3241 catcgcgcaa acttttgagg aactgatttg gatcagcctt tatggtacca tcacaaaacg
     3301 ccaggtgctc agcgatggaa aacttatggg atatagtcaa gaacatgtgg ttgttaccca
     3361 agaggaaggt ctgttcgacc taaagtcaaa tcaagcttgg catttccccg aaatactgcc
     3421 agaaaatcag attaacggct tgcagctaac gcaagatttc ctttatattt acgtcagtaa
     3481 cgtcattcga cgttacgcac taactcagtt aaaacattaa gtgcgatgca tgttgctgta
     3541 gcgggaaata ttggttcagg taaaacgact ttaaccggtt tattgtccaa acattacaaa
     3601 tggaaggccc actacgagga agtcgagcac aatccttatt tggatgattt ttacaaccaa
     3661 atggaacgct ggtcctttaa tctgcagatt tactttctca acagccgctt tcgccaaatc
     3721 atagacatcc gagaaaacgg caaagaggtc attcaagacc gcaccatata tgaagacgcc
     3781 catatttttg caccaaacct gcacgctatg ggactcatga ccaatcgcga ttttgaaaat
     3841 taccgttctt tgtttgatct gatggaaagt ttcactaaag gcccagacct tttgatctat
     3901 ctaagaagtt ccatccctaa tttggtcaag caaattcaca agcgtggccg tgaatacgaa
     3961 aactcgatca gtattgatta cctcagccga ttaaacgagc gctatgaggc gtggattcat
     4021 aactacgaca aagggaacct cttgatcatc gatgtggacg aattagactt tgtggacaat
     4081 caggaagact taggggcggt tatcaataaa attgacgctg aactccacgg gcttttttag
     4141 agttcaatcc attgctattt cgccatcacc accccccaat cgaaaaagat caccgcagct
     4201 tgatgcccat tcgtaataaa gggcacaatg acaaagaata aaacaatcat aaaaaaaacc
     4261 ggctctttgg ccggtttttt ttatttagat ataaggcaag attactcctg ctctacttca
     4321 acttcgatga ccttttctcc gtcaacttcg tcgattttaa ttttcattgc ctccagtgct
     4381 tcaacctcag tacgcacctc ttcttcggtt cctttaaaaa cctgtacgct ttcttgaagt
     4441 tcaccattga cgctcgttgt tgtggttaca gtcgctttga acgtatcgcc ctctgattcc
     4501 ataattacag taactttttc atcataatct tcagaaacaa acatcatcgc atgcggcgct
     4561 tcagtcgaag aggcttcgtg atgcccccct aaaattggcg caatcacaag tcctaccaaa
     4621 caggtcaact taatcaaaat gttcatcgat ggaccagaag tatctttaaa tggatctcca
     4681 acggtatctc cagtaaccgc agctttatgc gcatcactgc ctttgtaagt catttcacca
     4741 ttaatctcaa cacctgcctc gaaagacttc tttgcgttat cccaagcacc accagcatta
     4801 ttttgaaaaa ttgcccacat tacaccactc acacaaacac cagcnngggt tacgatcgtc
     4861 aagagaccag gcaatagcat ttctttcagc gcagctttag tggaaatttc cacacactta
     4921 ccgtattcag gggttcctgt accttccata atcccgggaa tttcgcggaa ttgacgacgt
     4981 acttcctgca ccatttccat agctgcttta cccacagatt tcatcgccat agccgagaaa
     5041 acaacaggaa tcatccctcc tacaaataaa gcggcaagaa cgtcagcttt gaaaatatta
     5101 attccatcaa tacctgtaaa ggtcacatag gcagcaaata atgcaagggc tgtaagcgcc
     5161 gcagaagcaa tcgcaaatcc ttttcctact gcagcagtag tatttcctac agagtccaaa
     5221 atatccgtac gctcacgcac atgatcttcc aattcactca tttcagcaat accccccgca
     5281 ttgtctgcga taggaccaaa ggcgtcaata gccaactgca tagcagtggt ggccatcatc
     5341 gcagaggcag caagtgccac tccataaaat ccagccaact cgtacgagcc gtaaattgca
     5401 gccgcaaata aaagcacact ccaaaatgtt gacttcatac ccacagccaa accagcga
//
LOCUS       DPUP01000184            7925 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_80,
            whole genome shotgun sequence.
ACCESSION   DPUP01000184 DPUP01000000
VERSION     DPUP01000184.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7925)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7925)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7925
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1343)
                     /locus_tag="DHV98_06915"
     CDS             complement(<1..1343)
                     /locus_tag="DHV98_06915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HCK06076.1"
                     /translation="MKTTQPFNRSRVLLITALAGLFAAACSDDFVDVNSENQNSETYF
                     NTEEDYQNALIGAYDMLQSSYLNVMLGEIASANTLAGGESATDVIGIQQIDDMIHTPT
                     NEQLRSIWSWVYAGVNRANYILEFQDKIDFDGKANVIGQAKFLRAYYYFELVKWFGDV
                     PLVVDRRITFGVQFEIDRTPKAQVYAQIEEDLIYAANNLPAVQDQAGRVTKGAAQALL
                     GKAYLYQEKWSDAATTLDAVINSGPYDLMADFGLVFENENENNIESVFEVQYTDLEGA
                     GFGCLQCSEGNVAVGFNGPRQYNGPNFESGFSFNVPTQETYDLYDENDVRRDFGILNI
                     EQWAADNSGYNGGAGVSYTEGYEHTGFFNRKYIPRQGDANIGDQNLTNPNNYRSIRFA
                     DVLLMAAEAHHENGNDASAQSYVNRVRARANLGAITATGGDLGEAIYLERRLELVG"
     gene            complement(1357..>2085)
                     /locus_tag="DHV98_06920"
     CDS             complement(1357..>2085)
                     /locus_tag="DHV98_06920"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family protein"
                     /protein_id="HCK06077.1"
                     /translation="GYEVGGGFGIGQDPPARMEEGFPIGYFYGYQTQGIFQTQDEADN
                     APSQIALGALARAGDIRFADLNGDGVINTQDKTYIGDPIPDVTMGLNLSFKYKNFDFQ
                     SYFFASLGNEIVRNYERNDRFTNRTSYYLNRWTGPGSSNEFPRVTTAATSNLVFSDFY
                     VEDGSFLRAQNMQLGFSLGDELLEKFKLSKLRVYFSASNVFTLTKYRGYDPTSSNGSP
                     IGSGFDPGFYPTPRTYLLGANIKL"
     assembly_gap    2086..2166
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2167..4516)
                     /locus_tag="DHV98_06925"
     CDS             complement(<2167..4516)
                     /locus_tag="DHV98_06925"
                     /inference="COORDINATES: protein motif:HMM:TIGR04056"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family protein"
                     /protein_id="HCK06078.1"
                     /translation="MKQFFIFALSFLWSISAHAQEITISGQVADNNNEPLIGASIVEI
                     GTNNGVTTDFDGNFSISVSSEDSQLSITYLGFLGRTVSVGTQRDFSISLDEDAASLEE
                     VIVIGYGTQRKKEITGAVSIISSETIEELKPVRIEQALQGQVAGVQITTQSGSPGSRS
                     DIRIRGISTNGDNQPLILVDGNVIEDLSVVNPADIESINVLKDATAGIYGVRAANGVI
                     LITTKTGRKATPLSIEYDGYVGFQETTRTLPALNATEYGLLINEAFVANGSPIVYPSV
                     AALGIGTDWQEEVFSKAPVFNQSISLNGGSKKSTYSGGASVLSQDGIVGGDKANFTRY
                     NGRLNFSTEQFEKLTFRGSLLYTGIQRKTLQENGIGSVLYNALNMNPVLPVQGNNFGY
                     SRAENLPIEVINPLAQIEATFNNSQVHKISGVAGLEYKVVPNLTFKTNYQWNYAEVDN
                     RYYSPIADFGVEGIADKVFDRLDVSTLVEEEQFFRDYTFDAFLTYENTFEDAHNLTAL
                     LGTSVFRTTGDFYGFTGQGLPDKPFEDLSIDDAETVFDNYVNVSNRIFDSRLLSYFTR
                     VQYDYKGKYLFSALLRRDGSTNFGPNNKFGFFPSLSLGWVASDESFLQDSKIFDFLKL
                     RGSYGIIGNDRIGAFRFESLLSGEGTYVFDNTLFFGTAIGAISNPDIKWEEQVTLDFG
                     VDSRFLSGKLTFEMDYFNRETRDLLLVVQTSGTTGSTAPGSGNPVANAGSVRNSGFEL
                     SLGYKENFGNDFTFGVNYNLTTLDNEVLSVNNGVGYEVGGGFG"
     gene            complement(4764..7583)
                     /locus_tag="DHV98_06930"
     CDS             complement(4764..7583)
                     /locus_tag="DHV98_06930"
                     /inference="COORDINATES: protein motif:HMM:PF00196.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR family transcriptional regulator"
                     /protein_id="HCK06079.1"
                     /translation="MQIRPLFILLLGLFNIALWPSQGQELPPIVNYTAEIYGANNQNW
                     MVSQGPDNEIYAANNDGLLRFNGSRWALYPTPNQSVMRSVNAIGDRIYTGFYMDFGYW
                     LTDNKGGLTYTSLMDQRAIQPIEDEQFWQIFTYDKWLVAQSLQRLIMMDLATNNTVIV
                     EAEHTLSKAFVVSGQLYFHDLNHGLYTVQNGQKQLVNRSEITTIGRLVGAAFVMGKTV
                     FAHENKGLFVLENSVFTPWSNALNAALSPYELYSVAATKNGRVILGTIADGLIALNQS
                     NQSIDFHLTRSNGIENNTVLSLFEDAQSNIWAGLDNGIACINAASNIRPYVEQNGLLG
                     TTYASAIFNGNLYLGTNQGLFFRPLDEKIPFERVPGTAGQVWSLVALGNTLFCGHNAG
                     TFVVQEGQVSKISDIQGAWDFKPLNGRDDLVLQGNYDGLYLLRKNTSGLWRLALKIEG
                     FDYSAKHFEITPNNEIVVSHEYKGVFLLKPDPGFENILAYSLIPEIKKGIHSDLETYQ
                     GTLYYASEHGVFRKTDETNEFIKDPELSALFEDHHYTTGRMIADKYGRLWFFTDQNLV
                     GVSTDPIDGSYQFNYLSLPKDLRQDLPGHENLSFTAENEMIYGNAQGYLRVKGRTPSA
                     PNLSTQFDRLTATDAEGESIDLSWQNPSALDYRLNNLSFNFHYPDYGKYNNILFSYRI
                     LPYYNQWSEWSDQSHFDITNLPPDQYSFEVRTMYNGIILKQPLTYNFEVTPPWYRSTL
                     AMMLYIILGTLVIIGLNLSYRGYYKRQRDRMLKAKTADLELRDLAAQKEIMALKNQQL
                     QQDIEARNRELAISTMSMINKNTTLNKLKSELVKSKEESENIAPALSIIDQALKNDQD
                     WEFFEQAFNHADKKFFKRIKEKHPSLTPNDLRLCVYLRLNLSSKEIAPLLNISARSVE
                     IKRYRLRKKLDLERDVNLSEYVINL"
     gene            complement(7608..>7925)
                     /locus_tag="DHV98_06935"
     CDS             complement(7608..>7925)
                     /locus_tag="DHV98_06935"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06080.1"
                     /translation="HTLLRFEAPQLLFQSLDSPYLAGFFGAFSKIPKGVLSPKELYLL
                     PHQLRLTRLKSPLHVEIKNNVFQGTHYLVSGVFYEHTIYFNYHKPLKVGRICYLALLN
                     NIA"
BASE COUNT         2176 a         1744 c         1732 g         2192 t
ORIGIN      
        1 ccgacgagtt ccaaacgtcg ttctaagtat atcgcttcac ctaagtcgcc tccggtagcc
       61 gtgatcgctc ctaagttcgc gcgcgcacga acacgattga cataagattg tgccgaggca
      121 tcattgccat tttcgtgatg ggcttctgca gccatgagca agacatccgc aaaacgaata
      181 gagcgataat tgttagggtt ggtcaaattt tgatccccaa tattggcgtc cccttgacga
      241 ggaatgtatt tgcggttaaa aaagccggta tgctcataac cttcagtata actcacacca
      301 gcacctccgt tatagcccga attgtctgcg gcccactgtt cgatattgag tatcccaaaa
      361 tcacggcgca catcgttttc gtcgtataaa tcataagttt cctgcgtagg cacgttaaaa
      421 ctaaaacctg actcgaaatt aggcccattg tattggcgcg gcccattaaa acctacggcg
      481 acatttcctt cgctgcactg taggcatcca aagccagccc cttctaagtc ggtgtattga
      541 acctcaaaaa cagattcaat attgttttcg ttttcgtttt caaagacaag cccaaaatca
      601 gccatcaagt catagggccc tgagttaatc actgcgtcaa gcgtggttgc ggcgtccgac
      661 catttctctt gatagaggta ggccttgccc aaaagggcct gagccgctcc cttggttacg
      721 cgacccgcct gatcttgaac ggcaggaaga ttgttggcgg cataaattaa gtcctcttca
      781 atttgggcgt aaacttgtgc tttaggcgta cggtctattt caaattgcac cccaaaggtg
      841 atacgacgat cgaccacaag tggcacatcc ccaaaccatt ttacgagctc gaaataataa
      901 taggcgcgca agaatttggc ttggccgata acattggcct tgccgtcaaa gtcaatttta
      961 tcctgaaatt ctaagatgta attcgcgcgg ttcaccccag catacaccca actccaaatg
     1021 ctgcgcaatt gttcgttagt cggggtgtgg atcatgtcgt cgatttgctg gatcccaatc
     1081 acgtctgtgg cactttctcc accagctagg gtgttggccg aggcgatctc gccgagcatg
     1141 acgtttaaat aagacgattg caacatatcg taggcgccga tcaaggcatt ttgatagtct
     1201 tcttcggtat taaaataagt ttcgctgttc tgattttcag aatttacatc gacaaagtcg
     1261 tcactacatg ctgcagcaaa aagcccagca agagcggtga tcagtagaac gcgtgaacgg
     1321 ttgaatggtt gtgtagtctt catagttctt agcgatttag agtttgatat tagcaccgag
     1381 taaataggtt ctcggcgttg ggtaaaaccc tgggtcaaat ccactgccta ttggcgatcc
     1441 gtttgatgag gttgggtcat accctcggta ttttgttaag gtaaatacat tgcttgcaga
     1501 gaagtaaacg cggagtttag aaagcttaaa cttttcgaga agctcatctc ctaaactaaa
     1561 tccaagctgc atgttttggg cgcgcaagaa cgaaccgtct tcaacataaa agtctgaaaa
     1621 gacgagattc gaggttgctg cggtagtcac cctggggaat tcattgctgc ttcctggtcc
     1681 tgtccaacga ttcagataat aggacgttcg gtttgtaaaa cgatcatttc gctcatagtt
     1741 acgcacgatt tcgttgccta aagaggcaaa gaaataagac tgaaagtcaa agttcttata
     1801 cttaaaggac aagttaagtc ccatggttac atcggggata ggatcaccga tataggtctt
     1861 gtcttgggtg ttgattaccc cgtcaccatt aaggtctgca aaccgaatat ctccggcacg
     1921 cgcaagggca ccaagcgcaa tttgactcgg cgcattgtcc gcctcatctt gtgtttggaa
     1981 aataccctgg gtttgatatc cgtaaaaata accgatcggg aagccttctt ccattcttgc
     2041 tggcgggtct tggccaatac caaagccacc accaacttcg tacccnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnntacc aaaaccacca ccaacttcgt accccacacc attattcacg gagagcactt
     2221 cattgtccaa agtggtgagg ttgtaattca ccccgaaggt gaaatcattg ccaaagtttt
     2281 ctttgtagcc caaagaaagc tcaaatccgc tgttgcgcac agaacctgca ttagccactg
     2341 ggtttcctga tcccggagca gttgatcctg tagttcctga agtttggaca accaataata
     2401 ggtcccgcgt ttcgcgatta aagtagtcca tttcaaaagt gagcttaccg ctcagaaatc
     2461 ttgaatccac cccgaaatct aaagtcacct gttcctccca ttttatatca ggattggaaa
     2521 tggcgccaat ggccgttcca aaaaataagg tgttgtcaaa cacataagta ccctctccgc
     2581 tgaggagaga ctcaaaacga aaggcgccaa tacggtcgtt tccgataatt ccgtaggacc
     2641 ctctgagttt taagaaatca aaaatcttgg agtcctgtag aaagctttcg tcggaggcaa
     2701 cccagcccaa tgagagcgaa ggaaagaatc cgaatttatt atttggccca aaattcgtgg
     2761 aaccatctcg gcgcaataaa gctgagaaca aatattttcc tttataatcg tattgaaccc
     2821 ttgtaaagta ggacaacaac cgagaatcaa aaatgcggtt gcttacattt acgtagttat
     2881 caaaaaccgt ttcggcatcg tctatcgaca ggtcttcaaa aggcttgtct ggcagcccct
     2941 gtccggtaaa tccatagaaa tcccctgtgg tccggaatac agaagttccc aataaggcgg
     3001 ttaagttatg cgcgtcttca aatgtgtttt cgtaggtcaa aaaggcatca aaagtataat
     3061 ctctaaagaa ttgctcttcc tcaacaagcg tgcttacatc gaggcggtca aagaccttat
     3121 cggcaattcc ttctacccca aaatccgcga tcggcgagta ataacgattg tctacctcgg
     3181 catagttcca ctgataattt gtcttgaagg ttagattcgg cacgacttta tattctaaac
     3241 cagcgacacc gctgatctta tgaacttggg agttgttgaa agtcgcttcg atctgggcta
     3301 aagggttgat gacctcgata gggaggtttt ccgctcttga ataaccaaaa ttgttcccct
     3361 gaacaggaag cacaggattc atattaaggg cgttatagag cacagaacct ataccatttt
     3421 cttgaagggt ttttctttga attccggtat acaagagaga accgcgaaat gtgagttttt
     3481 caaattgttc ggtgctaaaa tttaggcgcc cattgtaacg ggtaaaattt gccttgtcgc
     3541 ccccgacgat tccatcctga cttaaaacag aggcgccccc tgaataggtc gatttttttg
     3601 agcccccgtt aagagagatg ctttgattaa atacaggagc tttagaaaag acctcttcct
     3661 gccaatctgt ccctatgcca agagcggcaa cactaggata gacaatagga gaaccattag
     3721 caacaaaagc ttcgttgatt aacaaaccat attctgtggc gttcaaggca ggcaaggttc
     3781 ttgtcgtctc ttggaaccct acatagccgt catattcgat gctcaatggg gttgctttac
     3841 gccctgtttt ggtggtgatc aaaataactc cattcgcggc gcgcacccca taaatccctg
     3901 ctgtggcatc ttttaaaaca ttgatgcttt cgatatccgc aggatttact acgctgaggt
     3961 cttcgatgac gttgccatca actaaaataa ggggttgatt gtctccgttt gttgaaatac
     4021 cacgaatacg aatgtcagaa cggctcccag gcgaacctga ttgagtggtt atttgaacac
     4081 cggcaacctg accttgaagg gcctgttcaa tccgcacggg tttcaattct tcgatggttt
     4141 cgctcgaaat gatggaaaca gcaccagtga tttccttttt gcgttgggtt ccgtaaccaa
     4201 taacaattac ttcttcgagc gatgcagcgt cttcatcgag cgagatcgaa aaatctcttt
     4261 gtgtcccgac gctcaccgtt cggcccaaaa acccgagata ggtaatggat aattgagaat
     4321 cttcgctact tacgctgatc gaaaagttac catcaaagtc ggttgtgact ccgttattgg
     4381 tgccaatctc tacaattgag gcgccgataa ggggctcgtt gttattgtcg gcaacttgtc
     4441 cagaaattgt gatttcctgc gcatgcgctg aaatgctcca aagaaaggat agagcaaata
     4501 taaaaaattg cttcatggtc tgttagtttg agcacaaatt agcaaagttt gacttgttgc
     4561 gccacctttg aaaactatac aaaaatgata cagcgttccg gcggcgggtt ttcaaacgag
     4621 caatctgtag ccaattattt gattttcata gcattaactt aatcagacct ggatcgttat
     4681 tctcaagagt ctgcttaagt aagtgctaaa ttacaaaaaa tgttgtggta atgttgtgtg
     4741 cagaataaac aatgtaaagg atgtcataaa ttgatgacgt attcgcttaa attcacatct
     4801 cgctctaaat caagtttttt gcgtaatctg tagcgtttga tttcaacact gcgcgcagag
     4861 atgttgagta ggggggcaat ttcttttgag gacaaattta atcgtaaata gacacaaagt
     4921 cgcaagtcgt ttggtgtaag acttgggtgt ttctctttga tgcgtttaaa gaacttctta
     4981 tcggcatggt taaacgcttg ctcaaagaat tcccagtctt gatcgttctt aagggcctga
     5041 tcaataatgg agagggcagg cgcaatattc tctgattcct cctttgattt aaccaactct
     5101 gatttcaact tgttgagggt ggtgttctta ttgatcatac tcatggtaga gatcgcaagt
     5161 tctctattgc gggcctcaat gtcctgttgg agttgttgat tctttagggc cataatctct
     5221 ttctgggcgg ccaaatcacg aagctctaga tcggcggttt ttgcttttaa catgcgatct
     5281 ctttggcgct tatagtaccc gcgatagctc aagttaagcc cgataataac aagggttcca
     5341 aggataatat agagcatcat cgctagcgtt gagcgatacc atggaggggt gacttcaaaa
     5401 ttataggtga gcggctgctt taggatgatt ccattataca tggtacgcac ctcaaatgag
     5461 tattggtcag ggggtaaatt ggtaatgtca aaatgacttt ggtccgacca ctcgctccat
     5521 tgattgtagt agggtaaaat acgataggaa aaaaggatat tgttgtattt accgtaatcc
     5581 ggataatgaa aattaaaact aaggttgttc aagcgataat cgagcgcgct cggattttgc
     5641 catgataaat cgattgattc tccttcggcg tccgttgctg tgagtcggtc aaactgtgtg
     5701 ctgaggtttg gcgcacttgg ggttcgccct tttaccctga gatacccttg cgcgttcccg
     5761 taaatcattt cattttccgc ggtaaaggac aaattctcat gaccaggcag atcctgtctt
     5821 aaatccttgg gcaaactcaa ataattaaat tgataagagc cgtctattgg atcggtggaa
     5881 acacccacga gattttgatc ggtaaaaaac caaaggcgtc catatttgtc ggcaatcatg
     5941 cggcccgtgg tataatgatg atcttcaaaa agggcactga gctcagggtc ctttataaat
     6001 tcatttgttt catcggtttt gcgaaatacg ccgtgttcag aggcataata cagtgtgccc
     6061 tgataagtct ctagatcgga gtgaatccct tttttaattt cagggatcaa cgaataggcc
     6121 aaaatatttt caaagcccgg gtctggtttt aataggaaca ctcctttata ttcatgactt
     6181 acgacgattt cgttgtttgg ggtgatttca aagtgttttg ctgaataatc gaagccctca
     6241 atcttgagcg ctaaacgcca tagcccggac gtatttttgc gtaacaaata aagcccatca
     6301 taattgcctt gaagaactaa atcatcgcgt ccattaaggg gtttaaaatc ccaagcccct
     6361 tggatgtcgg atattttact gacctggccc tcttggacaa caaaggtccc tgcattatgc
     6421 ccgcaaaaga gcgtgttgcc tagtgcgacc aaactccata cttgacccgc tgtccccggc
     6481 actctttcaa aaggaatttt ttcatcgagg ggccggaaaa agagcccttg attggttcct
     6541 aaataaagat tgccattaaa gatcgcagag gcgtatgtcg taccgagtaa accgttctgt
     6601 tccacataag gccgtatatt ggaagccgca ttgatacaag cgatcccatt gtccagacca
     6661 gcccaaatat tagactgcgc atcctcgaaa agactcagta ccgtattgtt ttcaataccg
     6721 ttacttcttg tcaaatgaaa atcgatactt tggtttgatt gatttaaagc aattaagcca
     6781 tccgcaatgg taccgagtat cactcggcca ttttttgtgg ccgctacact atacagctca
     6841 tagggactta gcgccgcatt taatgcgtta gaccaaggcg taaagaccga attttctaaa
     6901 acaaaaagac ctttattttc atgagcgaaa acggtcttac ccatcacgaa ggcagcgccg
     6961 accagccgac caatagtcgt tatttctgaa cggttcacca attgtttttg gccattttga
     7021 accgtgtaca aaccgtgatt taagtcgtga aaataaagtt gtccactgac gacaaaagcc
     7081 ttagaaaggg tgtgctcagc ctcaacaatc accgtattat ttgtggccaa atccatcatg
     7141 attaggcgtt gaagggactg agcgacgagc catttgtcgt aggtaaaaat ctgccaaaat
     7201 tgctcgtcct caataggttg aatggcgcgc tggtccatta atgaggtata agtcaaccct
     7261 cctttgttgt cggttaacca atacccaaaa tccatataaa atccggtgta aatgcgatca
     7321 cctatagcgt ttacagaacg cattacactc tggttgggtg tggggtagag tgcccatcgg
     7381 ctcccattaa aacgcaataa gccgtcgttg tttgccgcgt aaatttcatt atcaggtcct
     7441 tggctcacca tccaattttg attgttggcg ccataaattt ctgccgtata attgacaatg
     7501 ggcggtagtt cttggccttg actgggccat agcgctatat taaaaagtcc cagtaacaga
     7561 ataaatagag gccgaatttg catagaggac gtttatagag gatcaaatta agcgatatta
     7621 ttcaacaaag ccaaatagca gatcctcccg acttttagcg gtttatggta attaaaatag
     7681 attgtatgtt cataaaacac acccgagacg agataatggg tgccctggaa cacattgttt
     7741 ttgatttcaa catgtaaggg tgatttaagc cgggtcaacc tcagttgatg gggaagtaaa
     7801 taaagttctt ttggggacaa aacccctttt ggaatttttg aaaaagcacc gaagaagccc
     7861 gctaaatacg gactgtctaa ggactgaaaa agcaattgtg gcgcttcaaa tcgcaataag
     7921 gtatg
//
LOCUS       DPUP01000185            3768 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13547,
            whole genome shotgun sequence.
ACCESSION   DPUP01000185 DPUP01000000
VERSION     DPUP01000185.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3768)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3768)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3768
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            85..173
                     /locus_tag="DHV98_06940"
     tRNA            85..173
                     /locus_tag="DHV98_06940"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:119..121,aa:Leu,seq:taa)
     gene            232..771
                     /locus_tag="DHV98_06945"
     CDS             232..771
                     /locus_tag="DHV98_06945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008636388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HCK06081.1"
                     /translation="MLFGGLLCFSAFGCGQKSMAQQPVESIYDIDIEGIDGKPMDLAQ
                     YKGKKILFVNVASECGFTKQYDGLQELYENHKDKLVVIGLPCNQFGGQEPGGEAEIQS
                     FCRANFDVEFPMTEKIEVKGPGQHPIYQWLTQKAKNGSQDSSVKWNFQKYLVDEQGRF
                     IDFFYSITKPDSPRIIGLL"
     gene            890..>2133
                     /locus_tag="DHV98_06950"
     CDS             890..>2133
                     /locus_tag="DHV98_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-independent anion transporter"
                     /protein_id="HCK06082.1"
                     /translation="MKKYFNLFDFRQKVDYKIEVLSGLTVALALVPEAVAFALLAGLS
                     PLTGLYAAFMMGLVTAIFGGRPGMISGATGAVAVVFVGLIAQLRLLYPEMGLEQITQY
                     IFLTVILGGVFQLIFGFLRLGKFIRLVPQPVIFGFVNGLAIIIFMAQLPQFTINSTDA
                     SAPWMQGTELYSFLGLVALAILIVWGLPKLTKAFPSGLAAILTIFAIVYFFDIPTSTV
                     GDIASVQGGFPMPSFPEVPLNLKTFLLILPYAAIVAGVGLIESLLTLNIVDEITQTRG
                     RGNKEAIAQGGANILSGLFLGMGGCAMIGQSLINISSGSRARLSGIVAAVMLLVFVMF
                     GAPIIERLPMAALTGLMIMVAVGTFEWASFKALNKMPKSDIFVMVLVTLVTVLSHNLA
                     IAVLIGVVISALVFAWDNSKRIR"
     assembly_gap    2134..2321
                     /estimated_length=188
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2322..2666
                     /locus_tag="DHV98_06955"
     CDS             <2322..2666
                     /locus_tag="DHV98_06955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013452263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-independent anion transporter"
                     /protein_id="HCK06083.1"
                     /translation="SKRIRARKYVAHDGVKHYEIYGPLFFGSVAVFNEKFDIAGDPEE
                     VIIDFQESRVVDMSAIEALNGLTERYAAQGKRVRLKHLSPDCRILLQNAEQIIDVNVM
                     EDPQYKVVTDIL"
     gene            2873..3768
                     /locus_tag="DHV98_06960"
                     /pseudo
     CDS             2873..3768
                     /locus_tag="DHV98_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008866368.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TrpB-like pyridoxal phosphate-dependent enzyme"
     assembly_gap    3052..3099
                     /estimated_length=48
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT          905 a          743 c          871 g         1013 t
ORIGIN      
        1 accttgccaa ggtggaggtc gcgggttcga atcccgtttt tcgctccaca aagccgaaca
       61 cgttcggctt tttttatcac tgctgcagaa gtggtggaat tggtagacac gctggactta
      121 aaatccagtg gacagaaatg tccgtacggg ttcaagtccc gtcttctgta caaaaacccc
      181 ggcaatagcc ggggttttat gtttacattt gcaaaaaaaa ctatgttaag aatgttgttt
      241 ggtggactgc tttgtttttc cgcttttggc tgtggccaaa aatctatggc gcaacagcct
      301 gttgagtcca tctacgatat tgacattgaa ggaatcgatg gcaagcccat ggacctcgct
      361 caatacaaag gcaaaaagat actttttgtt aacgtggcct cagaatgtgg gttcaccaaa
      421 caatatgatg gcctgcagga gctctatgaa aaccacaagg acaagctcgt ggtaattggg
      481 ttaccctgta atcagttcgg gggtcaagaa cctggaggtg aagctgaaat ccaatcgttt
      541 tgccgagcaa attttgacgt ggaattccca atgaccgaaa aaatagaggt caaaggcccg
      601 ggacaacacc cgatttatca atggctgact caaaaagcca aaaacggatc tcaagattcc
      661 tcagttaaat ggaactttca aaagtacctg gtcgatgagc aggggcgttt tatcgatttc
      721 ttttattcaa tcacaaagcc tgacagtcca agaattattg gattgcttta gggccaaatt
      781 tcagatcaac cattaaaagg ctctagctga ttttattacg ggtccttacg gggctgggct
      841 acttatttat agtgtataaa acagaccatc cgcaccacaa tccataatta tgaagaaata
      901 ttttaaccta tttgatttca ggcaaaaggt agattataaa attgaagtgc tgtctgggct
      961 taccgtagca ctggccttgg tgcctgaggc cgtggccttt gcgcttttag caggactatc
     1021 tccactcact gggctttatg cggcctttat gatgggactg gttaccgcga tttttggagg
     1081 acgaccaggg atgatttcag gagcgaccgg ggcggttgcc gttgtttttg tcggcctgat
     1141 cgctcagtta cgccttttat atcctgaaat gggtctggaa caaattaccc aatacatctt
     1201 tttaacggtt atactggggg gtgtttttca attgattttt gggtttttgc gtttgggtaa
     1261 atttattcgc ttggtgccac agcctgtgat atttgggttt gtcaacggac tggccattat
     1321 tatttttatg gctcagttgc ctcaatttac gattaacagt acggacgcca gcgctccttg
     1381 gatgcagggc acagaacttt acagttttct cgggttggtg gctttggcga tattaattgt
     1441 atggggactg ccgaaactga ccaaagcgtt tccgtcggga ttagcggcta ttttgacaat
     1501 tttcgccatc gtctactttt ttgatattcc gacttcaacc gtcggggata tcgcttcggt
     1561 gcaaggagga tttccgatgc cttcatttcc agaggtgcca ctgaatctaa aaacgttctt
     1621 attgatattg ccttatgcgg ctattgtggc tggagtgggc cttatcgaaa gtttactcac
     1681 cctgaatatt gtcgatgaaa tcacccagac ccgaggacgc ggtaataaag aggcgatcgc
     1741 tcaagggggc gcgaatattc tctcagggct atttttagga atgggcggtt gcgccatgat
     1801 tggccagagc ttaatcaata tttcctctgg gtcgcgcgcg cgactctcag ggattgtcgc
     1861 agcagtgatg cttttggtgt ttgttatgtt cggtgccccg attattgagc gcttgcccat
     1921 ggcggcttta accggtctaa tgatcatggt ggcggtagga acttttgaat gggcgagttt
     1981 taaggcccta aacaaaatgc ctaaatccga tatctttgtg atggttttag tgactttggt
     2041 cacggtactg tctcataact tagcgattgc tgtgctcatt ggtgtggtga tctctgcact
     2101 ggtctttgca tgggataatt cgaaaagaat tcgnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntcgaaaaga attcgtgctc
     2341 gcaaatatgt agcccatgat ggcgtgaaac actatgagat ctatgggcca ttgttttttg
     2401 gctctgtagc tgtgtttaac gagaagtttg atatcgccgg cgaccccgaa gaggtgatta
     2461 ttgactttca ggagagccgt gtggtcgata tgtccgctat tgaggcactc aatggactca
     2521 ccgagcgcta tgcggcccaa gggaagcgcg ttcgccttaa acatttaagt ccggattgcc
     2581 gaattttgtt gcaaaacgct gagcaaatca ttgatgtcaa tgtcatggag gatcctcagt
     2641 acaaggtggt cacagatata ttgtaacatt ttttattttt ttagtctgga actttggaaa
     2701 attaaaatac acccactact tttatctcaa tgaaaagaca atttttaaat aacaattggt
     2761 ggcctcacga aacgtcagtc tcgtgaacta gcttttgtta tcaataatat acaaagccca
     2821 tcgttcgcga tgggcttttt ttttaaccca atttgatgta aaagatttta ttatggaacg
     2881 aaaaattttg cttagcgaaa aagaaatccc tgagcaatgg tacaatatca ttgcggacat
     2941 gccgaacaaa cccctgccgc ccttgaaccc tgggactctt gaacccatag ggcctgaggc
     3001 tttggcgccc ttattcccta tggagctgat taagcaggaa gtgaccaccg tnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc tcgatacccc agccaaaatt
     3121 tactataagt atgaaggagt gagtcctacg gggagtcata agcccaatac ggctgtgccc
     3181 caagcctatt acaataaaat ggaaggggta aaaaaaatag caacagaaac cggtgcgggg
     3241 caatggggta gtgctttgag ttttgcctgt caacatttcg gtcttgaatg cgaggtattt
     3301 atggtgcgcc tttcttatga tcacaaaccg cacagaaagg ttatgatgaa tacttggggc
     3361 gcgacggtgc atccttcacc gtctgaggcc accgaaattg gtaaaaaaat attggcggag
     3421 tatcccgata cttccgggtc tctcgggatt gctatttccg aagccattga agttgcggcc
     3481 aaagatgagc ataccaaata cgctctggga agtgttttga accacgtgaa actccatcaa
     3541 acgatcatcg gccaggaagc cattaagcaa atggaaaagg cgggagatat gccggacatc
     3601 gtgattgccc cttttggcgg cggatctaat tttgccggac tggcctttcc gtttttacgc
     3661 ctgaattttg atgaaggacg caacatccgc tgcatcgcga gtgaaccagc ctcttgtcca
     3721 aaactgacgc gcggcgtgtt ccgttatgat tttggagata cggcgggg
//
LOCUS       DPUP01000186            9204 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17923,
            whole genome shotgun sequence.
ACCESSION   DPUP01000186 DPUP01000000
VERSION     DPUP01000186.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9204)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9204)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9204
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            112..570
                     /locus_tag="DHV98_06965"
     CDS             112..570
                     /locus_tag="DHV98_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly cofactor RimP"
                     /protein_id="HCK06084.1"
                     /translation="MKAQVETLLTDALAERSDLFLIDWNIDSENHIKIIIDGDEGVRV
                     QDCIDISRAVEHNLDREALDFSIEVLSAGVTEPLVEKRQFQKNIGRILNVKFKDQEVE
                     GELVSLSDEALTLSYQVREKKPVGKGYVKIQKEQEIAFDSVVRATVMIKF"
     gene            581..>928
                     /locus_tag="DHV98_06970"
     CDS             581..>928
                     /locus_tag="DHV98_06970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008992070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCK06085.1"
                     /translation="MENLALIESFSEFKDDKLIDRVTLMAILEDVFRNALKKKYGSDD
                     NFDIIINPDKGDMEIWRNRVVVADGEVEDPNEEISLTEARKIEEDFEIGEDVSEEVKL
                     MDLGRRSILALRQN"
     assembly_gap    929..1049
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1050..1936
                     /locus_tag="DHV98_06975"
     CDS             <1050..1936
                     /locus_tag="DHV98_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008638810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HCK06086.1"
                     /translation="LIAKIHEHDNTNVYKQFKDLEGEIYTAEVHHIRHRAVILLDDDG
                     HEIILPKDKQIPSDFFRKGDNVRGIIESVELKGNKPSIIMSRASPIFLEKLFEQEIPE
                     VFDGLITVKKVVRIPGEKAKVAVDSYDDRIDPVGACVGMKGSRIHGIVRELGNENIDV
                     INFTNNTNLFITRALSPAKVTSLTIDEKNKRVEVILKPEEVSKAIGRGGHNIRLAGQL
                     TGYEIDVLREGAEEDVELTEFSDEIETWIINEFKKIGLDTAKSVLEKDLSFLVNSTDL
                     EEETIIEVVNILKEEFEE"
     gene            1995..4661
                     /locus_tag="DHV98_06980"
     CDS             1995..4661
                     /locus_tag="DHV98_06980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HCK06087.1"
                     /translation="MAEGKTIRINKVLREFNISLDRAVEFLGAKGYVVEARPTTKISD
                     DEYQLLLSEFQTDKSKKVEAKEVGEEKRKEKEELRQEFEKEIEEKPAPVVEVVKAESK
                     LSGPKMLGKIDFEPKKKLEPEKKEVAEAVKVEEPVAAAPVVEEKIVEKKEVPAKVVVP
                     VVAAPPKKEPVKEAEVASDDAPLKTQYKKLDGPNFTGETIDLSQFKKPERKTDDKSKV
                     AQEKRGKRRRISKDAPGAKTGQKPGRVRTAITKEEPSEEEVQRQVRETLEKLQGKSSK
                     GKGAKYRREKRDSHRQKSDDEMAQLEADSKLLKLTEFVTVSELATMMNMQVTQIISAC
                     MSLGMMVTMNQRLDAETLSIVAEEFGFEVEFVTADIEEAIQEQSDAPEDLKDRAPVVC
                     ILGHVDHGKTSLLDYIREENVIAGESGGITQHIGAYAVTLADGQKITFLDTPGHEAFT
                     AMRARGAQVTDLAIIVIAADDDIMPQTKEAIAHAQAAGVPIVFAINKIDRPSANPEKI
                     KEGLANMNLLVEDWGGKVQSQDISAKTGQGVPELLEKVLLEAELLELKANPSRMANGT
                     VVEAFLDKGRGYVSTILVQGGTLRVGDFVLAGQHSGKVKAMHDERGHVIKEAGPAKPV
                     SILGLDGAPQAGDKFNVFEDEREAKAIATRRTQLQREQSVRTQRHITLDEIGRRIALG
                     DFKELNIILKGDVDGSVEALTDSFLKLSTEEIQVNIIHKGVGAITESDVLLASASDAI
                     IIGFNVRPMGNARQLADKEEIDVRSYSIIYDAINDLKDAMEGMLSPELREEVTGTAEI
                     RETFKISKVGTVAGCMVLSGKIFRNSGVRLIREGVVVYTGVLDSLKRFKDDVKEVSKG
                     YDCGLQIKNYNDINIGDVIEAFQEVEVKKKLK"
     gene            complement(4753..4872)
                     /locus_tag="DHV98_06985"
                     /pseudo
     CDS             complement(4753..4872)
                     /locus_tag="DHV98_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386687.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
     assembly_gap    4955..5073
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    5342..5385
                     /estimated_length=44
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5584..6888
                     /locus_tag="DHV98_06990"
     CDS             5584..6888
                     /locus_tag="DHV98_06990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HCK06088.1"
                     /translation="MEQVTYRNLTAKALSLLLFTVLAFSFSPNANASIDFPAAQALDT
                     VAGENLFNANCAACHKLYKKATGPALFQVGDKYDREWLYSWIKNSQEMVKSGDAKANA
                     IYNEYNGAVMTSFPQLSNADIDNIIAYTYTPKKAPAVAAVTTATTSANSGGVSNDIIL
                     AVLALVFMLLVVMLFLVNKTLRRIAQANGVVYEEKAARTPIWKLFIENQFLVLVTAIF
                     FLLASGYFAYGYLMQVGVDQGYEPVQPIHYSHRIHAGDNQIDCNYCHSSARKSKHSGI
                     PSLNVCMNCHKNIAEVAEETLAEGKNEYGVDYNAEIKKLYAAVGWDENTQSYTGETQP
                     VQWIRIHNLPDFAYFNHSQHVTVAGVECQTCHGPVEEMEIMYQYAPLTMGWCINCHRE
                     TNIQVKDNEYYEHIHEELSKKYGVDNLTAAQMGGLECGKCHY"
     gene            6918..>8124
                     /locus_tag="DHV98_06995"
     CDS             6918..>8124
                     /locus_tag="DHV98_06995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol:cytochrome C oxidoreductase"
                     /protein_id="HCK06089.1"
                     /translation="MASNKKYWKSIEELNPESSVVEALKQNEFAQPIPTDQFLGDKDV
                     LEHSSTTRRDFLKYVGFSTAAASLAACEGPVIKSIPYVVAPDEIVPGVANYYATTISD
                     GFDFASVLVKTREGRPIKIERNDLGGKIGGVNARVHASVLSMYDKNRLMGPQINGQDA
                     TWADLDQAVASGLEGLNGAEVILLTQSFASPSTAALVQAFTKKYPNVKHVTYDMVSVS
                     EALDAFQEVYGMRALADYDFSKAATIVSIGADFLGDWQGGGFEAGYAQSRIPKDGRMS
                     RHIQFEANMSLSGANADRRVPASPAQQAAVLGYITGSKALSDVPEGIRPAAEQAKRQL
                     EKAGSTGVLVCGLPCPMAQKKVLNYNASIGSVVMDVTHPIMKFSGSSTAVQDVIEGVK
                     NGRIKGLITA"
     assembly_gap    8125..8382
                     /estimated_length=258
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <8383..>8681
                     /locus_tag="DHV98_07000"
     CDS             <8383..>8681
                     /locus_tag="DHV98_07000"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06090.1"
                     /translation="FKNLAFTLSFAMRADETASAAKLVAATPHYLEAWGDVEAKKGMF
                     SLVQPTIRPLFNTRQFQECMLAWTGSTQSYHDYLKAFWQENILSGSSWSKALHDGV"
     assembly_gap    8682..8957
                     /estimated_length=276
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <8958..>9204
                     /locus_tag="DHV98_07005"
     CDS             <8958..>9204
                     /locus_tag="DHV98_07005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06091.1"
                     /translation="RHFDTGEAMALCLYTKTGLGDGRQANNPWLQELPDPISRATWDN
                     YLTVSATDAKRLGLTNTHVSNGALNGDCARVTVGDAVL"
BASE COUNT         2492 a         1584 c         2054 g         2256 t
ORIGIN      
        1 tacggcgacc accgagatct acactctttc cctacacgac gctcttccga tcttttatcg
       61 cagtaaagag gagaggggac gggagtcccc tctttttata aactgaattt tatgaaagca
      121 caagtagaaa ctttgttgac tgacgcgctc gctgaacgtt ccgatttgtt tttaatcgat
      181 tggaatatcg acagcgaaaa ccacatcaaa atcattatcg acggcgatga aggtgtgcgt
      241 gttcaagatt gtatcgacat ttcgcgggct gtagagcata atctagatcg tgaagccttg
      301 gacttttcta ttgaggtttt gtctgctggg gtgactgaac cgttggtgga aaagcgccaa
      361 tttcaaaaaa atattgggcg tattctgaac gttaagttta aagatcaaga agttgaggga
      421 gaattagtct cgctcagtga cgaggcctta acactcagtt atcaagtccg tgaaaaaaag
      481 cccgttggaa agggttatgt caaaattcaa aaagagcagg agattgcctt tgattcggtg
      541 gtccgcgcca cagttatgat taaattttaa tgaatttatt atggagaatt tagcgttaat
      601 tgaatcgttt tcagagttta aggacgacaa acttattgat cgcgttacgc tgatggctat
      661 tttggaagac gtatttcgaa atgccttaaa gaagaaatat ggaagtgatg ataactttga
      721 tattatcatc aatccagata aaggggatat ggagatctgg agaaatcgtg tggtggttgc
      781 cgacggtgag gttgaagatc caaatgaaga aatttcgtta accgaggccc gcaaaatcga
      841 agaggatttt gagattggcg aggatgtatc cgaggaggtt aaactcatgg atctcggacg
      901 acgttctatt ttggcgttgc gtcaaaatnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng tctaattgcc aaaattcacg aacacgacaa
     1081 cacaaacgta tacaagcagt ttaaggacct ggaaggagag atatacaccg ccgaggtgca
     1141 ccacatcaga caccgtgcag tgatcctact tgacgacgat ggtcatgaaa ttatactgcc
     1201 aaaagacaag cagattcctt cggatttttt ccgaaaaggg gacaatgttc ggggaattat
     1261 tgagagcgta gagctcaagg ggaacaagcc ttcaatcatc atgtcacgcg cgagtccaat
     1321 ttttttggaa aaacttttcg aacaagaaat ccctgaagta tttgatgggc taatcaccgt
     1381 taaaaaagta gtccgtatcc caggtgaaaa ggcaaaagtt gctgtggatt cctacgatga
     1441 tcgtattgac ccagttggcg cttgtgtcgg catgaaagga tcacggattc atgggatcgt
     1501 tcgcgaattg gggaatgaga atattgatgt gattaatttt acaaacaata caaacttatt
     1561 tatcacgcgt gccctgagtc cggcaaaagt gacttcttta acgatcgatg aaaagaacaa
     1621 gcgggttgaa gtaattctca agccagagga agtgtccaag gcgattggtc gtggagggca
     1681 taatattcgt cttgcgggtc agttgacagg gtatgaaata gatgtattgc gcgaaggggc
     1741 agaagaggac gtagaactta ccgagttttc agatgaaatt gaaacttgga tcattaatga
     1801 attcaaaaaa attggtttgg ataccgcaaa aagtgttttg gaaaaagacc tgtcattttt
     1861 ggtgaacagt accgatttag aagaagaaac gatcatcgag gtggtcaata tattgaaaga
     1921 agaatttgaa gagtaggtca aggttgacta cttttacata agaattcgag aaaaataaat
     1981 aggaaaagca ttttatggct gaaggtaaaa cgattcgaat aaataaggtt ttaagagaat
     2041 tcaatatttc actggatcgt gctgtggaat ttttgggggc caaaggatat gtggttgaag
     2101 cacgtcctac caccaaaata tctgacgacg agtatcagtt attgttatct gaatttcaga
     2161 cagataagtc caaaaaggtt gaggctaagg aagtcggtga agagaagcgc aaagaaaaag
     2221 aagaattgcg tcaagaattt gaaaaggaaa tcgaagaaaa gccggcgcct gttgttgagg
     2281 tcgtcaaggc cgaatcgaaa ctttctggcc caaaaatgtt gggtaagatc gattttgagc
     2341 ccaagaaaaa acttgagcct gagaaaaaag aggtggccga ggcagtaaaa gtcgaagagc
     2401 ctgttgctgc tgctcctgtt gttgaagaaa aaatagtcga gaaaaaagaa gtccctgcta
     2461 aggttgtggt ccctgtagtc gcggcgcccc ctaaaaagga accggtaaaa gaggccgagg
     2521 ttgcctccga tgatgcgcca ttgaagactc agtataaaaa gctcgatggc cctaatttta
     2581 ctggggaaac gatcgattta tctcaattta aaaagcccga gcgcaaaacg gacgataagt
     2641 ccaaagtcgc gcaagaaaag cgtggtaagc gccggcgaat cagtaaagat gctcctgggg
     2701 caaagactgg tcaaaaaccc ggtcgcgtgc ggactgcaat caccaaagag gagccgagcg
     2761 aggaagaagt ccaacgtcaa gtgcgggaga ctcttgagaa actccaagga aaatcttcta
     2821 aaggaaaagg ggctaaatat cgtcgcgaaa aaagagacag tcaccgccaa aaatctgatg
     2881 acgaaatggc acaactggag gccgatagca aattgctgaa gcttactgag tttgttacgg
     2941 tgagtgaatt ggccaccatg atgaatatgc aagttaccca gattatttct gcctgcatgt
     3001 ctttaggaat gatggtgacg atgaatcagc gattggatgc ggaaacatta tctatagtgg
     3061 ctgaagaatt tggatttgag gttgaatttg taaccgcaga tatcgaggag gcaatacagg
     3121 agcagagcga tgcaccagaa gacctgaagg atcgcgcacc ggtggtgtgt atattggggc
     3181 acgttgatca cggtaaaact tctcttttag attacatacg agaagagaat gtaattgctg
     3241 gggaatctgg agggattacc caacatattg gggcctatgc agtgactttg gcagatggac
     3301 aaaagataac gtttttggat actccaggac acgaggcttt tacagcgatg cgtgctcgtg
     3361 gagctcaagt aactgactta gcgattattg ttattgctgc cgatgatgac attatgccgc
     3421 agaccaaaga agccatcgct cacgctcaag ccgctggtgt tcctattgtc tttgcaataa
     3481 ataaaattga ccgaccaagt gcaaatcctg agaaaataaa ggagggattg gccaacatga
     3541 atttgttagt tgaggattgg ggcggaaaag tacaatcaca agacatttct gccaaaacgg
     3601 gtcagggcgt ccctgaattg cttgaaaaag tcttgcttga ggctgaatta ttagaactta
     3661 aagccaatcc atcgagaatg gctaatggaa cggtggttga agccttctta gataaaggtc
     3721 gtggatatgt atctacgatt ttggttcaag gcggaacttt acgcgtggga gactttgtat
     3781 tagcgggtca gcacagtgga aaagttaagg cgatgcacga tgagcgcggt catgtcatta
     3841 aagaggcggg acccgctaaa ccggtatcca tactcggtct ggatggcgcc cctcaggccg
     3901 gtgataaatt taatgtcttc gaagacgaac gtgaagcaaa agcgatcgcc actaggcgaa
     3961 ctcaattaca gcgcgagcag tcggtaagaa ctcagcgaca cattacgctg gatgaaattg
     4021 ggcgtcgtat cgccttagga gatttcaaag agctgaatat tatccttaaa ggggatgttg
     4081 atggttctgt tgaagcctta acggattcgt tcttgaagtt gtccacagaa gaaattcaag
     4141 tgaatattat tcacaaagga gttggagcga ttacagaaag tgatgttcta ttggcctcag
     4201 cttcagatgc gattatcatt ggatttaatg ttcgcccaat gggcaatgca cgtcagctcg
     4261 ctgataaaga ggaaattgat gtcagaagtt actcaatcat ctatgacgcg atcaacgacc
     4321 ttaaggatgc tatggagggg atgttgtctc ctgagcttcg tgaagaggtt acaggaactg
     4381 cagaaatccg tgaaacattc aagatttcga aagtcggtac cgttgcagga tgtatggtgc
     4441 ttagcggaaa gattttcaga aactcaggag tccgcttaat ccgagaaggg gtagtggttt
     4501 acactggagt acttgattct ttgaagcgat tcaaggatga tgtcaaggaa gtctcaaaag
     4561 gctatgattg tggtctgcaa attaaaaact acaacgacat caacatcggt gatgtcatcg
     4621 aggcattcca agaggttgaa gtaaaaaaga aactcaagta gattagggtt tgttttgagt
     4681 tgctttatta tctgagtccg aacgctcagg gtcttgattt tccgaggtcg aggcttcttt
     4741 acgcatcagt gccggcttaa aaataaacgc tgtaggaaat ttgcgttgaa tcgcctttaa
     4801 agcttgatcg gcactgagtc tcacgctgaa attacctgcc caaaccttgt aattgggtgt
     4861 ttcataatga accattatgg gccactgagg aaagtcatgt tcaaaagccg ccataatttc
     4921 ttgtccatcg ctcagtgcgc ctgagtgaag ctgannnnnn nnnnnnnnnn nnnnnnnnnn
     4981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncccccag taagtgcccc ttttgcattt
     5101 caatttttat ctgtaaaagg gaatcaagtc gtgtatcgcg cagcacatta tcctgttgtg
     5161 cttgaatgtg aagactgaaa ataaagctca gtaaagcaat cgtttttctg gatgtacttt
     5221 tgggtagtat attcatatct gttaccttga attacaaaag taaaatatta aatgccactt
     5281 ggggaaaaat gtttatttag aattattata aattagtttt aaggcgcgat acataatttt
     5341 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngttta atctttttaa
     5401 tcgtgcttaa aactttattt agaataatta taaattaagt tatcccttaa agattgaatt
     5461 tccaaaatcg acttaataat gtacttttgc acagttattt ttaggtgata attagtgtcg
     5521 tataacacag tttttcacaa cttattgcgc ctcaattgta tggaccacaa tttaactgat
     5581 tctatggaac aggtaactta ccgaaatcta actgcgaagg cgttgtcttt attgctcttc
     5641 acagtcttgg ccttctcatt tagcccaaat gcaaatgcat caattgactt ccctgccgct
     5701 caggctttgg ataccgttgc gggagagaac ttatttaacg ccaactgtgc cgcttgtcac
     5761 aaattgtaca aaaaagcaac ggggccggcc ttgtttcaag taggagataa gtacgatcgt
     5821 gaatggctct attcttggat caagaatagc caagaaatgg tgaagtcagg agatgccaaa
     5881 gccaacgcga tttacaatga atacaacggt gcggttatga cttcatttcc gcagctcagt
     5941 aatgctgata ttgacaacat aatcgcttat acctacaccc cgaaaaaagc gccggcagtt
     6001 gccgcagtaa ctaccgcgac gacctcggca aattcaggag gcgtatccaa tgacattatt
     6061 ttggccgtat tggctttggt atttatgttg ttggtggtca tgttgttttt ggtcaacaaa
     6121 acattacgtc gcattgccca ggccaatggt gttgtttatg aggaaaaagc agcccgtacg
     6181 ccaatttgga agttgtttat cgagaaccag tttttagttt tggtcacggc tattttcttt
     6241 ttgctcgcct caggatattt tgcctatggt tatttaatgc aagtgggggt ggatcaaggt
     6301 tacgagcccg ttcaaccgat tcattattct caccgtattc acgctggaga caatcaaatc
     6361 gattgtaatt attgccacag ttcagcccga aaaagtaagc attctgggat tccttcgctg
     6421 aatgtttgta tgaattgtca caaaaatatt gccgaggtcg ctgaggaaac attagctgaa
     6481 ggtaaaaatg aatacggcgt tgattacaat gccgaaatta aaaagttata cgctgccgta
     6541 ggatgggatg aaaatactca atcttacact ggggaaacgc agcctgttca gtggattcgc
     6601 attcacaacc taccagattt cgcctatttc aatcactctc aacacgttac tgtagctgga
     6661 gttgagtgtc aaacgtgtca tggtcctgtt gaagaaatgg aaatcatgta tcagtatgct
     6721 cctttgacca tgggatggtg tattaactgt caccgtgaaa ccaatatcca agtaaaggat
     6781 aatgaatatt acgagcacat acacgaagaa ttatcgaaga aatacggtgt agacaacttg
     6841 acggcggcgc aaatgggcgg ccttgaatgt ggtaaatgtc actactaaat tagatcagaa
     6901 ttttcagagc gcatattatg gcatcaaata agaaatattg gaaaagtatc gaggagttaa
     6961 acccagagag ttctgtggtt gaagccctca agcaaaatga atttgcacag cccattccga
     7021 ccgatcagtt tttaggcgat aaggatgttc tagaacattc atcgactacg cgtcgtgatt
     7081 tccttaaata tgtgggcttt tcgacagctg ctgcttcttt agctgcttgt gaaggaccgg
     7141 tcattaaatc gattccttat gttgtcgccc cagatgaaat cgttccaggg gtggcaaact
     7201 actatgccac tacaatttct gacggatttg attttgcctc tgttttagtt aaaaccagag
     7261 aaggtcgtcc aattaaaatc gaacgtaatg atttaggcgg taaaatcggc ggggtaaatg
     7321 cgcgtgttca cgcctctgta ttgtctatgt atgacaaaaa tcgtttgatg gggcctcaaa
     7381 tcaatggtca agacgccacc tgggctgatt tagatcaggc ggttgcttct ggattagaag
     7441 ggctcaatgg tgccgaagtg attttgttaa cccaaagctt tgcaagcccc agtacagcgg
     7501 cgcttgtaca ggcctttacc aagaaatatc caaacgttaa acacgtaacc tatgatatgg
     7561 tttctgttag tgaagcctta gatgccttcc aagaagtcta cggaatgcgt gctttggcag
     7621 attacgattt cagtaaggcg gcgactatcg tttctattgg cgctgacttc ctaggagact
     7681 ggcaaggagg cggttttgaa gcaggttatg ctcaaagccg aatcccaaaa gacggacgta
     7741 tgtctcgtca tatacaattt gaagccaata tgagtttaag tggggcaaac gcagataggc
     7801 gtgtgcctgc ttcgccagcg caacaagcgg ctgtattggg atacattaca ggatcaaagg
     7861 ccctctctga tgtgccagag ggaattcgcc cggcagcaga acaagcaaag cgacaattag
     7921 aaaaggcagg cagcacgggc gtgctcgtat gtggtttgcc atgtccgatg gctcaaaaga
     7981 aagtattgaa ttacaatgct tctataggtt ctgtagttat ggacgtgacc catccaatca
     8041 tgaagttctc aggctcaagt actgcggtac aagacgtaat tgagggcgtt aagaatggac
     8101 ggatcaaagg gcttataact gcagnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntttaaaaa cttagccttt
     8401 acgctgtctt ttgcgatgcg tgcagatgag actgcttctg cagccaaatt agttgcagcg
     8461 acaccgcatt atctagaagc ttggggcgat gttgaggcta aaaaaggcat gttctcttta
     8521 gtccaaccga ccattcgtcc tttgtttaat acacgtcaat tccaagagtg tatgctggct
     8581 tggaccgggt caactcagag ctatcacgat tacttaaaag ccttttggca agaaaatatt
     8641 ctctccggtt cttcttggag taaagcctta cacgacggtg tnnnnnnnnn nnnnnnnnnn
     8701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8941 nnnnnnnnnn nnnnnnncgt cattttgata ctggtgaagc gatggccctt tgtctttaca
     9001 caaagactgg tttgggggat ggtcgtcaag ccaataaccc atggcttcag gaacttcctg
     9061 atccgatttc aagagcgact tgggacaact atttaactgt gtctgccacc gatgctaaac
     9121 gtcttggctt gaccaatacc catgtatcta atggcgcctt aaatggggac tgcgcgcgcg
     9181 ttaccgtagg cgatgcagta ctcg
//
LOCUS       DPUP01000187           17673 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8805,
            whole genome shotgun sequence.
ACCESSION   DPUP01000187 DPUP01000000
VERSION     DPUP01000187.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 17673)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 17673)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17673
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            3..>338
                     /locus_tag="DHV98_07010"
     CDS             3..>338
                     /locus_tag="DHV98_07010"
                     /inference="COORDINATES: protein motif:HMM:PF13440.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen translocase"
                     /protein_id="HCK06092.1"
                     /translation="MGTDYFPRLSSVGEDLDKTKMIVGNQAEMATLLMLPIIVIFLAT
                     APWIITLLYTPEFEAVVPLVRWGILGMLFKAVSFSLGYVIIARGDSSLFLRTTLSFNL
                     ILFTLNALGY"
     assembly_gap    339..508
                     /estimated_length=170
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <509..828
                     /locus_tag="DHV98_07015"
     CDS             <509..828
                     /locus_tag="DHV98_07015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06093.1"
                     /translation="YYWGLLGLGLSFFGYYIIHFLSLILIVRWRYALTLPRTLYAVFF
                     LGLILCVLVFLLSSFSGSVLQIALTAILIAITCLFSLYRLNQRIDLVPILRRKKDQDS
                     DEY"
     gene            962..1561
                     /locus_tag="DHV98_07020"
     CDS             962..1561
                     /locus_tag="DHV98_07020"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HCK06094.1"
                     /translation="MHFGKLKGRITLPDEIHMGMVGFGQPYELVTRARGIAQIHIEGQ
                     LIFKGYVQFGLDYLLHLGPEGILTMGHMASVASNSKVICHQAINFGDYARLGSEAQVI
                     DTNFHAMRTVSTNTPMPMRGPISIGSYNFVSNRVTFLQGAKTPNHCTVASNSLCTKDI
                     TPFGENILVGGIPVKLLREDIDRDWTGEQAMLDKYLKLF"
     gene            complement(1558..2742)
                     /locus_tag="DHV98_07025"
     CDS             complement(1558..2742)
                     /locus_tag="DHV98_07025"
                     /inference="COORDINATES: protein motif:HMM:PF13524.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 1"
                     /protein_id="HCK06095.1"
                     /translation="MVSHKDMKILLVGEYSRLHNSLKEGLMALGHQVILMGDGDYFKN
                     YPVDIKLNRPFQKGLPKRLKNLIFRLSGFDVSSWLMLRSAMRHKKALQGHDIVQLINE
                     SPLGIMPKHELKLVQWLAAHNDKLFVMACGTDYISVKFAMDQNFRYSILEPLFKGKVS
                     QKQYAAILKYLSPGHLALHKSVSELCHGYIASDLDYALPYRGLSKYLGLIPNPINMEH
                     IKFIPQKKDKKPLIFHGVNTKNYYKKGSDYFDQALEIVTKERPNSCEIMRTQDLPYHE
                     YRAKLTRSDIVLDQVLGYDQGYNALEAMAQGKVLLTCAEKEWREHYHIPEHCVALNAL
                     PDAQKIANLIIELIDHPAQRVVLGEQARQFIEEHHDYKKVSQKYLDLWSTGRGSASSP
                     RP"
     gene            2756..3895
                     /locus_tag="DHV98_07030"
     CDS             2756..3895
                     /locus_tag="DHV98_07030"
                     /inference="COORDINATES: protein motif:HMM:PF13439.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06096.1"
                     /translation="MSEVKNIHVCLVAISLGTGGAQRVVAAHSEMFAALGYRVTVAIL
                     RDPIDYVYSGELLHLGGKNPIHNAPPRATQSWQRLWRLYRFIKVHRPDVIVDHRSRTS
                     IFKEWVYRKLIYGKTRVIYVCHSAHAPIYLTDRPQRFGRMTTKYSEHVGVSRYITQDL
                     MRKYGLKHRSYIPNFVSAQWLAQGDQWLAQAKTGSPIKAPYLLWFGRLDESVKDIRLL
                     LEAFAHSTAKKQGYKLIILGSGPDALALQNRAKDLRVEPSVEFLSFDPNPQGLIKGAR
                     CVCLTSHYEGFPMALLEALSLGTPVISLDILSGPDELIHDGVNGLLVRERNSRIFGQA
                     IDTLCLDESFYKGVKSKAQSSVAGYGADKVSQQWKELIEQAYDHD"
     gene            3882..4316
                     /locus_tag="DHV98_07035"
                     /pseudo
     CDS             3882..4316
                     /locus_tag="DHV98_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782773.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    4196..4243
                     /estimated_length=48
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4296..5246)
                     /locus_tag="DHV98_07040"
     CDS             complement(4296..5246)
                     /locus_tag="DHV98_07040"
                     /inference="COORDINATES: protein motif:HMM:PF10111.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06097.1"
                     /translation="MAQFTVVIPLYNKAAEIRATLNSVFAQTFSDFKVIVIDDGSTDH
                     GAQIVKEFTDTRLRLIGQKNQGVGPARNTGVKEAKSPFIAFLDADDYWYPEHLENLNA
                     LIHRFPQAQWMATAYEKAFTPNLIKPVDTPLRSFPQGWQGAVPDYFAMAKKDAPAWTS
                     ALCFSKDFFQNLGGFDPAITMGAGEDTDLWIRAALTQPMYWINSISARHLQFSSNRVS
                     HAPTLKRHFIDLDQYENRAQDHKSLKIYLDLNRYSIGLKYQMAGDQRRAESYFNALDR
                     SSLNALQRILIGLPGGVLRFGLSAQRLLAGFGLRLSAFGR"
     gene            complement(5283..6137)
                     /locus_tag="DHV98_07045"
     CDS             complement(5283..6137)
                     /locus_tag="DHV98_07045"
                     /inference="COORDINATES: protein motif:HMM:PF00535.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HCK06098.1"
                     /translation="MLSILIPTFNDDITPLVERLCREIEGIETPVEIIVGDDHSTRAA
                     AYSNLQNLKSVVVFRNTENLGRTATRDLLAKKASYDTLLFLDADVMPAQGNFIKNYLS
                     AIGKSQVVFGGVQYKKEKPEHALLLRWVYGKQREAKTAQERQRNPFYIISQNLMIDKN
                     VFLAVNAPEIKRYGWDNVFSFQLYQQGVTVNHIENTVVHMGLESCDSYLSKVQQAMYT
                     LVWAEKNDRISQDFTLIQKFYNTLKGFGLAGLXXXRPTQEKFNAMLAYYALATGVRIP
                     KCSCIRPL"
     assembly_gap    5379..5388
                     /estimated_length=10
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6375..6494
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6495..7496
                     /locus_tag="DHV98_07050"
     CDS             6495..7496
                     /locus_tag="DHV98_07050"
                     /inference="COORDINATES: protein motif:HMM:PF00082.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06099.1"
                     /translation="MSYYKAIGVTQAWQRTTGNPKVLVGLSDARVDPLQKDFAGKTRV
                     LRAVDFQNGHGMGVAAIAVAQGDNDFGIPGVCYDCGLVTTNYGNPNMEMLLELADAGA
                     KVINCSWVSSIATKSGQEVINSLLERGVVVVAGAGNQNWGVNSGQKKYYPASYDGVIS
                     VSSVMYQHHDWQKALKYEESGKPYVENMWGMVGRTAEINHKKSGPEFRIYPQSTATLN
                     TEVDLLAPTVGVMRYSQWVTQGILSYNTYQGTSTAAPLVTGTIGLMFSLRPELPADEV
                     ETILKLTAKRIDHIEANAPFKGHYGAGMLQSGAAIDLVSRLYDAEGXSLPRLIESSF"
     gene            complement(7640..8329)
                     /locus_tag="DHV98_07055"
     CDS             complement(7640..8329)
                     /locus_tag="DHV98_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HCK06100.1"
                     /translation="MSSTVVDFNKAKIVQRDQVIFEAIDLKIAKGEFVYLIGKTGSGK
                     SSLLKTLYGELPLNSGTGQVAGFNLLGLKERHIPSLRRKLGIVFQDFQLLNDRNIYEN
                     LRFVLKATGWTQEAQISQRIEEVLSRVGMNDQGRKLPYQMSGGEQQRIAIARALLNDP
                     ELIVADEPTGNLDPQTSLEVMSLLKDLNKNGRSILMATHDYALLLKHPSRTLKCEDGR
                     VFEVVHKKPEA"
     gene            complement(8381..8899)
                     /locus_tag="DHV98_07060"
     CDS             complement(8381..8899)
                     /locus_tag="DHV98_07060"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06101.1"
                     /translation="MKKILVIFLGVLIGGCGPSQSMATLITVKDQKIGIDTKNPDELL
                     TVNGGIHAKEVRVDLDGALAPDYVFDQYNGQTTHPNYSRLSIEQLQAYVKKYGHLPGV
                     PTHEMLSSNGLDLKKFSLTLLEKIEELTLYLIEQQNQIEILQNTLEVHVPSHWKNSTD
                     KSAENTEEKVEN"
     gene            9019..9315
                     /locus_tag="DHV98_07065"
     CDS             9019..9315
                     /locus_tag="DHV98_07065"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06102.1"
                     /translation="MFYPKFTVLLLLFIFLSGSLYGQGQGLEMAYYQVLQKTERLENS
                     GNYQAAYQSWNELDTKDLNRDQKAQRAFKMAYLGLVXGLQGRSWSHASICSGIS"
     gene            9287..12154
                     /locus_tag="DHV98_07070"
     CDS             9287..12154
                     /locus_tag="DHV98_07070"
                     /inference="COORDINATES: protein
                     motif:HMM:PF12895.5,HMM:PF13181.4,HMM:PF13432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06103.1"
                     /translation="MRRFVREYPSAPEVKRAYTTVGHYYFTKGQYANALAWYKDAEGF
                     HELTDQHQFEIAYAHFKLGNFSQATRFFGPLENSPHYGSRALYYSAYVDYENKKWQQA
                     LSKLDRIDLEQRDDLEVWGLMADLAFRTNNFEQAAAWGIRALDAIQISGDKRNINQGS
                     LNGLVGRAYAQMGTHAIAINYLEKAVDKPSRQKARDEHLENQFYLGQAYARLGQNEKA
                     VAVLSHVKADGLLAQDVAYVLAGAYLALDQKTEALNAYKKACETPDERPFTAKAYYQY
                     AKLTYDLRLSYTTVPAVLESFIKRYPQDPKRGEVEQWWLSTLLESQDYDQVIAYLSTP
                     SLLSDNVMGDERQSALQRAYFLKGRQQYDQGLSLAAQNSFQQAQKIKTNSLIGDQALF
                     WSGLIYAESGAFESALSMFDKLTDSKRFKKAPEWSMLSYEQAFAQMALKNYAQAQEGF
                     LNYLKQPKPVVKENEARLNLADCYFASKAYELALAQYNAVLNTGGGNEDYADFQAAMC
                     LSFTLGLEAKTQRLVKFLKTYPNSVYRDRVYLSLGSAYVSMDKIAAAKAQYTQLISEQ
                     KNSPLVASAYLNLGLISDNNSEFEQALNYFKSVVNLYPGTQEAISAVQSARNTFISLG
                     RVQEYGLWVDELDFISIDQAALDQASFESAKQAYAAQNDALSIERFEAYLENYSQGRY
                     ALEAHYILSEIYWRQQDVTNALFHADFVIAADENPSFIIPTLIRVARHYLSNQEFGAA
                     ESSLIKLLAQPLDSDQRTFALSNLMQMMSDQSRWQQAIDYANELTPYLSNNTQDPLRA
                     QARLISAWSYFELKEFDLAREQYKDMDELAKGHYGAQLNFAKAYFAHLDQDYSGSNEH
                     IQNLAQNYANYMVYGVRGLMLMAKNFEALSDPFQARFILENIRDNMHDFPELQQEAIE
                     HLAIMDQSKDAQEPENSAGAPEMDGTKEPSSNDKNQKKQND"
     gene            12123..>13029
                     /locus_tag="DHV98_07075"
     CDS             12123..>13029
                     /locus_tag="DHV98_07075"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06104.1"
                     /translation="MIKIKRNKMIKALIDHLIQGIVRRHNLTLTLTLFTLIGSQVRAQ
                     NTADSTGVATEVVDVVKSYTPSINLRPKTKWDWVPEEGQESRPAFAYNHENVNLSPSD
                     LPAVLRAVGPAKEITPRPLPNYLRVWLGTRSSAGLEGFVNREFNPESYLNLAFDHQQL
                     NGTIKGVTLPTDWAKSGLRAQWRTELQNRPSILALSANRSAVQWYGVPDTLSLDQSVN
                     NDFGQTYQKAALRHRLGSNGGWFTGLDSELSFFSDRYGVNEWSFSSSPRAKLIWDKRV
                     LSFTGNISYLSTRFSYEDPQITAQDY"
     assembly_gap    13030..13112
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <13113..13985
                     /locus_tag="DHV98_07080"
     CDS             <13113..13985
                     /locus_tag="DHV98_07080"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06105.1"
                     /translation="YHALNTDLGVQTELDFGDLMVNLGAKGWGHNGTSNTTFRLFPEI
                     ELNYPLWGRSLEANLSFRGQYKQHETNSLVTIQAFLAPGAGLQPQIDKQIMRLGFNGA
                     ITDLWQYNLGAEFRNFENQAYFIGRPWSGGQGAYAYDNGNSFAVNYDSGNELKITAKI
                     NGRLSQQWDIALDAAMIDNRPENNAEPWNIPGFSFGGSGTFHVNEQLLLTAQLLGYGP
                     RKEQRMVADQIVAETVKGFIDTQLHLNYALTKNFSATISGINLLNQSNGLWANYPVQG
                     VRVNLGLQYNFNAF"
     gene            14116..15783
                     /locus_tag="DHV98_07085"
     CDS             14116..15783
                     /locus_tag="DHV98_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003438218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06106.1"
                     /translation="MIIRVLGVCIVAIVVFGCQKKQEVDLIVFNAQVITLDDNAPEAQ
                     AFAVDQGKLLYAGSDEQVFDRYESKKNLDAQTKVIMPGIIDAHAHFYQLGLGLQEVDL
                     RGTTSKEEVIKRISDFVPYQNAEFIVARGWDQNDWIDQSYPTKEDLDAVFPEVPVALQ
                     RVDGHALWVNSKALSMAGINRSGPVPGGMIMGDAGGNPTGILVDAPCDRVLELVPEPT
                     IEISTQALISAEQYCFSMGLTGVHDAGLRRPVIELIDRLQEAGAFKMKIEAMVANIEP
                     DVSYYLDKGPLVKHRLRVGAIKVYADGALGSRGAALREPYSDAPEHFGAIITPMDELE
                     ALADRALKAGFQVNTHAIGDSANVSVLRVYQEALATHIRAQDENVRWRIEHAQVVPPD
                     YFEAFSKNIIPSVQPTHATSDMYWVEERLGEGRMKGAYAYNSLLAKAGILALGTDFPV
                     EYVNPMLTLSSAVYRRDTAGYPESGFYPDQGITREQALKGMTLWAAYANFSENQRGSL
                     QSGKDADFILLDRNPLTCPLEELSEIKVLKTYIDGESVYDSERPFGL"
     gene            complement(15760..16155)
                     /locus_tag="DHV98_07090"
     CDS             complement(15760..16155)
                     /locus_tag="DHV98_07090"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06107.1"
                     /translation="MYVFFSNGASENDTNNSVTLGTAYRNTSIVIYQKTLELITQTDP
                     DVLPILEQTTLNHEMGHLMGLVNIQNDDIHQVHEDPNSEKHCLHEDCLMYYDATNVGR
                     QMLNRWTQLRAVPQLDVQCLQDLQAKGAL"
     gene            complement(16199..16627)
                     /locus_tag="DHV98_07095"
                     /pseudo
     CDS             complement(16199..16627)
                     /locus_tag="DHV98_07095"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    16274..16308
                     /estimated_length=35
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            16626..17165
                     /locus_tag="DHV98_07100"
     CDS             16626..17165
                     /locus_tag="DHV98_07100"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06108.1"
                     /translation="MIRKMRAFILTVFCISQGVLWGQTDDFHREIMDMMALKGDEVTA
                     SVSFHDVFPKLQRNFARKKIEPEVWQELQQDEAQQVQEYVTQGAFAYRQFLNRDDVAS
                     LTNFYASDAGQNYLMQQELSAKDQKAVNQFFKTQAGLKLIEKRDSIALALDQIKKDWS
                     ETLFKKKMRQLIKGGHLKN"
     gene            complement(17170..>17673)
                     /locus_tag="DHV98_07105"
     CDS             complement(17170..>17673)
                     /locus_tag="DHV98_07105"
                     /inference="COORDINATES: protein motif:HMM:PF08241.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06109.1"
                     /translation="AGSHSLYLQNLGREVRSIDLSKGAVQIAQSRGVAQVTETSLLDY
                     DGERFDTIIMLMNGTGIFESLESVPAYLNKLKTLLNPKGMLLIDSSDLRYMYDTGDDE
                     AIWVPADRYYGELEFRLRYKKEFSEKFPWLFLDKHLFAHLAESNGWTFEILHEGAHYD
                     YLAKLMP"
BASE COUNT         4589 a         3570 c         4106 g         4938 t
ORIGIN      
        1 ccatgggaac tgattatttt cctcgtttgt cctctgtggg ggaggacttg gataaaacca
       61 agatgattgt cgggaatcaa gccgaaatgg cgacgctcct tatgcttccg attatcgtga
      121 tttttttggc cacagcccct tggatcatca ccttgctcta tacgcctgaa tttgaagcgg
      181 tcgtgcctct tgttcgttgg gggatcttag gaatgctgtt taaagccgta tccttttctt
      241 tgggctatgt aatcattgcg cggggcgatt caagtttgtt tttaaggaca accttgagtt
      301 tcaacctcat cttatttacc ttaaatgctt tgggttatnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnat tattattggg ggcttttagg tttgggcctg
      541 agtttttttg gatactacat cattcatttt ttgagtctca ttttgattgt acgctggcgt
      601 tatgcgttga cgcttcctcg gaccctttac gccgtgtttt tcttgggttt aatcctttgt
      661 gttttggttt ttctgctcag tagcttctca ggatccgtgc tccaaattgc cttaacggct
      721 attctaattg cgataacttg cctattttcg ttgtatcgat taaatcaacg gattgattta
      781 gttccaatac tacgccgtaa aaaagaccaa gattccgatg agtattagac ccttgtaccg
      841 caagttaaaa cagcgctgtc ggttgtaccg aaaaatcaac tggtgcaagt cgttgtactt
      901 caactttaag tacttttcat tttcaacggc gcgtaaactc cctattttgt tttacggaag
      961 ggtgcatttt ggaaaactaa aagggcgcat tactttgccg gatgaaattc atatggggat
     1021 ggttggattt ggacaacctt atgaattggt gacacgtgcc cggggtattg ctcagataca
     1081 tatcgagggt cagctcattt ttaaggggta tgtgcaattt ggtttagatt atctgctgca
     1141 tttagggcct gaaggaatat taactatggg gcatatggcc agtgttgctt ccaacagtaa
     1201 agtcatttgt catcaagcca ttaattttgg ggactacgcc cgcttaggat ctgaagccca
     1261 ggtgatcgac acgaactttc acgctatgcg cacggtcagt accaacaccc cgatgcctat
     1321 gcggggtccg atcagtattg ggtcttataa ttttgtgagt aaccgggtta cttttcttca
     1381 aggggccaaa accccgaatc actgcactgt tgcctcgaac agcctttgca ccaaagacat
     1441 tacccccttt ggagaaaaca ttttggttgg tggaattcct gtaaagttat tgcgtgaaga
     1501 tattgaccgc gattggaccg gggaacaggc gatgctcgac aaatatctta agctatttta
     1561 aggcctaggg gaggatgcag acccgcgccc tgttgaccat agatcgaggt acttttggct
     1621 gaccttttta tagtcgtgat gttcttcgat aaactgtcgc gcttgttccc ctaagacaac
     1681 tctttgagcc ggatgatcta tgagttctat gatcaggttg gcgatttttt gcgcgtcagg
     1741 aagcgcattt aaagccacac aatgctcggg aatatgataa tgttcgcgcc actctttttc
     1801 ggcgcaggtc agcagtactt ttccttgagc cattgcctcg agcgcattat aaccctgatc
     1861 ataccctaag acttgatcca gtacgatatc gctgcgggtg agctttgccc tatactcatg
     1921 gtagggcaag tcttgggtgc gcatgatttc acaggaattg ggtcgttctt tggttacaat
     1981 ttctagggct tgatcaaaat aatcgctgcc ctttttgtaa taattttttg tattcacccc
     2041 gtgaaatata aggggctttt tatccttttt ttgagggata aattttatgt gctccatatt
     2101 gatcggattg ggaataaggc ccaaatactt gcttaatccg cggtagggca gggcgtaatc
     2161 caaatcgctt gcgatataac catgacacaa ctcggaaacc gacttgtgca gggctaaatg
     2221 ccccgggctg aggtatttca gaattgccgc gtattgtttt tggctgactt tccctttaaa
     2281 aagaggttct aggatagaat agcgaaagtt ttggtccatg gcaaatttca cactgatata
     2341 atcggttccg caggccatta caaacaattt gtcgttgtgc gcggcgagcc attggaccag
     2401 ttttagctcg tgtttgggca taatacccag ggggctctca ttgatgagtt gaacgatatc
     2461 atggccttgt agcgcttttt tatggcgcat cgcagagcgc agcatgagcc aagaagaaac
     2521 atcaaaaccg ctcaagcgaa agattaagtt tttgagtcgc ttgggaagtc ctttttgaaa
     2581 tgggcgattg agtttaatgt caacgggata atttttaaaa taatcgccat ctcccatcaa
     2641 aataacttga tggcccaatg ccattagacc ttctttgagg gaattgtgca acctactgta
     2701 ttcgcctact aaaagtatct tcatatcttt gtgagagacc actaagttag cctatttgag
     2761 cgaagttaaa aatattcatg tttgcctggt cgccatctcg ctcggtactg gtggtgcaca
     2821 acgtgttgtc gccgcacata gcgagatgtt tgccgccctg ggctaccggg tcacggtggc
     2881 cattcttcgc gatccaatag attacgtcta cagcggtgaa ttattgcatt tgggcggaaa
     2941 aaatcccatc cataacgccc cgccgagagc gactcaatcc tggcagcgcc tttggcgatt
     3001 gtatcgcttt atcaaggtgc atcgtccgga cgtgattgtc gatcaccgct cgagaaccag
     3061 tatctttaaa gaatgggttt atcgaaaact catttacgga aaaacacgtg tgatttatgt
     3121 ttgtcacagt gcccatgccc cgatttatct caccgatagg cctcaaaggt ttggaagaat
     3181 gacgacaaag tattctgagc atgttggggt gtctcgatat ataacccaag atttgatgag
     3241 aaaatacggc ctaaaacacc gcagctatat cccaaatttt gtgtccgctc aatggctggc
     3301 tcagggggat caatggctgg ctcaggcaaa aacgggatcc ccgataaagg cgccatatct
     3361 tctttggttt ggtcgccttg atgaatccgt caaagatatt cggctattgc ttgaggcttt
     3421 tgcccatagc acagccaaaa agcagggtta taaactgatt attttaggtt ctggaccaga
     3481 tgccctggcc cttcaaaacc gagccaaaga tttgagggta gagccttctg tggaatttct
     3541 ttcgtttgat ccaaaccctc aaggtttaat caaaggggcg cgatgtgttt gtttgacgag
     3601 tcactatgag ggtttcccaa tggccttact cgaagccttg tccttaggaa caccggttat
     3661 ttcattggat attttatcag gacccgatga attgattcat gatggggtca acggtctact
     3721 ggtgcgtgag cgaaatagtc gtatttttgg tcaggccata gatacgttat gtctcgatga
     3781 gtcgttttat aaaggggtta aatcaaaggc acagtcctcg gtagcgggtt acggtgcgga
     3841 taaagtatcc caacaatgga aagaattgat tgagcaagct tatgaccacg attgaagact
     3901 taaaaattat tcaaatccca aaaattcacg accctcgggg taatctgtcg gttatcgagg
     3961 gcgatgtttt gccgtatcgt atagagcggg tgtactatct ttatgacgtg ccgtctgatg
     4021 cagcgcgtgg cgggcatgcg cacaaggaac aactcgaatg tcttattgcg ttaagcggaa
     4081 gtttttcagt gcttttggat gatgggacaa atcaaacaag agtggggctc aacaaaccca
     4141 atcaaggttt attgatcccg acaggaatat ggcgctcgtt agatgatttt tcgtcnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngtcctcg ggtcgctttg
     4261 aagaggcaga ctacattcgg gaatacgccg attttttaac ggccaaaggc cgatagcctt
     4321 aatccgaaac cagcgagcag tcgttgggcc gaaagtccaa aacgcaaaac tcctccagga
     4381 agtcctatga gtattcgctg tagcgcgtta agcgatgagc gatccagggc gttaaaatag
     4441 ctttctgctc gtctttgatc cccagccatt tgatacttca ggccaatgga atagcgattt
     4501 aagtctaagt atatttttag ggatttatgg tcttgagccc gattttcgta ttgatctaaa
     4561 tcgataaaat ggcgttttag ggtgggggca tgggaaaccc gattgctgct aaactgcaga
     4621 tgtcgcgcac taatagagtt aatccaatac atgggctggg ttaacgccgc ccgaatccat
     4681 aaatcggtat cttctccggc ccccatcgta atggctggat caaaacctcc tagattttga
     4741 aaaaaatctt ttgaaaaaca tagggcagag gtccaagcag gagcgtcctt tttggccata
     4801 gcaaaatagt ctgggacggc accttgccac ccttgcggaa aagagcgtag cggcgtgtct
     4861 actggtttaa taagatttgg ggtaaacgct ttttcatagg ctgtcgccat ccactgggct
     4921 tgcggaaaac ggtggatgag ggcattgagg ttttccagat gctcgggata ccaatagtca
     4981 tctgcatcga gaaaggcgat aaagggggat ttggcctcct taacgcccgt atttctggca
     5041 ggtccgaccc cctgattttt ttggccaatc aatcgaagtc tggtatctgt aaattctttg
     5101 acaatttggg cgccatgatc ggtagaaccg tcgtcaataa cgatgacctt aaaatcagaa
     5161 aatgtttgcg caaaaactga gttcaaggtg gcccgaattt cggcagcctt gttatataaa
     5221 gggatcacta cagtgaattg cgccattatg cttggtattt gtatgtcgaa aagtaataaa
     5281 acttataaag gtctaataca cgaacacttg ggaattctga cgccagttgc aagcgcataa
     5341 taggcaagca tagcgttaaa cttctcctga gtaggcctnn nnnnnnnnag gcctgcaagt
     5401 ccaaaacctt tgagggtgtt gtaaaatttt tggatcaggg taaagtcctg tgagatccta
     5461 tcatttttct cagcccaaac taaagtatac atcgcttgct ggaccttgct gaggtagcta
     5521 tcacaggact ctaggcccat gtgaactaca gtattctcga tatgatttac cgtaacgccc
     5581 tgctgataca attgaaaaga aaacacatta tcccagccgt aacgtttaat ttcaggggca
     5641 ttgacggcca aaaatacatt cttgtcaatc attaaatttt gagaaataat gtaaaagggg
     5701 ttgcgctgtc tttcttgcgc tgttttggcc tctcgttgtt ttccataaac ccagcgcagg
     5761 agtagggcgt gttctggttt ttctttcttg tactgcactc cgccaaagac aacttgggat
     5821 ttccctatcg ccgacaaata atttttaatg aaattaccct gagcgggcat tacatcagcg
     5881 tctaaaaaaa ggagcgtatc ataacttgct ttttttgcca aaagatcacg cgtcgcggtg
     5941 cgtccaagat tttcagtatt tctaaaaacc acaacagatt ttagattctg taaattgcta
     6001 tatgctgctg cacgcgtaga atggtcatcc ccaacaatga tttcgacggg cgtttctatg
     6061 ccctcaattt cgcgacatag tcgctcaacc agcggcgtga tatcatcatt aaaagttggg
     6121 atcagtatcg aaagcatctt ggtggaatca tggctaattt acgattttcg tcatgtactg
     6181 acacgacttt ttattacatt cgattatgtt attatttaac gtcgtgtcgc ggcactctta
     6241 tattgccctg ttgttttttt tactttgtca aggggttttg gggcaaaatc cgacaaagca
     6301 acatgtcttg cccaatgatt tttacttttt gcgggatgct gggggtcgga tcatagatac
     6361 catggatttg agttnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnttgagt tattacaagg ccataggcgt tactcaggcc tggcaacgca
     6541 ctacaggaaa cccaaaagtt cttgtcggac tctctgacgc tcgggtagac cctctgcaaa
     6601 aggattttgc tggaaagacg cgggttctga gagcagtaga ctttcaaaat gggcacggaa
     6661 tgggggtcgc tgccatagcc gtggcccaag gggataatga ttttggtatc ccaggggtgt
     6721 gctatgactg tggtttggtg accacgaatt acggtaaccc caacatggaa atgttactgg
     6781 aattggctga tgctggggca aaagtaatca attgtagttg ggtcagttca atcgccacaa
     6841 agagcggtca agaggtgatt aacagtttac tggagcgcgg cgttgtggtg gtggctggag
     6901 cgggcaatca gaactggggc gtcaatagcg gtcagaaaaa atattatccg gcctcctatg
     6961 atggggtgat ttcggtctct tcggtgatgt atcaacatca cgattggcaa aaggctctga
     7021 agtatgagga aagtggcaag ccttatgtcg aaaatatgtg gggtatggtg gggcgtaccg
     7081 ccgaaattaa tcataaaaaa tcaggtcctg aatttcgaat ttatccgcaa tccacagcga
     7141 ccttaaacac tgaagtagat ttactcgccc caaccgttgg ggtgatgcgc tatagccagt
     7201 gggttaccca gggtattttg agctataata cttatcaagg cacttccacg gccgcgccct
     7261 tggtgacggg aaccattggg ttgatgtttt ctttgcgccc agagttaccg gccgacgagg
     7321 tagaaactat tttaaaattg acggcaaagc gcattgatca tattgaggct aacgccccat
     7381 ttaagggtca ttacggggca gggatgcttc aaagcggggc cgcaatagat ttggtctcga
     7441 ggctttatga cgcggaaggn naaagcttac cgcgtttaat cgagtcgtca ttttaaagga
     7501 cattcaattt acagagcagt ccgagtttac tttgcgtgcc aagaaacaaa tcatacttaa
     7561 acccggaacg ctattggctc ccgaaaacaa taagggcatc aagttgtctg ttgatcctgg
     7621 cttgacgata accccttagt taagcctcag gttttttgtg gaccacctca aaaactctac
     7681 cgtcctcgca ttttaaggtt ctcgaggggt gctttaacaa tagggcgtaa tcgtgggtgg
     7741 ccatgagaat acttctgcca tttttgttga ggtccttgag taaactcatc acctccaaac
     7801 tggtttgggg gtcgaggttt cctgtgggct catcggcaac gatcagttca gggtcattga
     7861 gtaaggctct agcaatagca attctttgct gttctccgcc cgacatttga taagggagtt
     7921 tacggccttg atcgttcatg cccactctgc tcaatacttc ttcaatgcgc tggctaattt
     7981 gggcctcttg tgtccatccg gttgccttga gcacaaaccg caaattttcg tagatgtttc
     8041 ggtcgttgag taattgaaaa tcttgaaaaa caatacccag ttttcttcgt aagctgggga
     8101 tatgacgctc ctttagccca agtaagttga acccagcaac ctggcctgtc cctgaattta
     8161 aaggcaattc cccataaagg gtttttaata aactgctttt tccgcttccc gtttttccaa
     8221 tcaaataaac gaactctcct ttagcgattt ttaagtctat agcctcaaaa attacttgat
     8281 cacgttgaac gattttagct ttattgaaat caactacagt gcttgacatc gattggattt
     8341 ttatcagggt taaaggtaca aatttcgatg gcgtcgcttt ttaattctca actttttcct
     8401 ctgtattttc tgcggatttg tcggtcgaat ttttccaatg gcttgggaca tgcacctcca
     8461 aagtattttg caaaatttcg atttgatttt gctgctcgat caggtaaagc gtgagctctt
     8521 ctattttttc caataaggtc aaagaaaact tctttaaatc cagaccatta ctgctgagca
     8581 tttcgtgggt cggaaccccg ggtaagtgac cgtacttttt cacataagcc tgaagctgct
     8641 cgatcgacag gcggctgtaa ttgggatgtg ttgtctgtcc attgtattga tcaaaaacat
     8701 aatcgggggc tagtgctcca tccaaatcta cccgaacttc tttggcatga ataccgccgt
     8761 tgaccgtgag taactcatca ggatttttgg tgtcaattcc tattttttga tctttgaccg
     8821 tgattaaggt cgccatggat tgggaggggc cacaaccacc gatcaaaacg cctaaaaata
     8881 tcactaaaat ttttttcata aaactgggga ttactgagcc aatccatcaa atttaagtta
     8941 attttcccgc atggagcaat ctcgcgatac gagaacaaaa aaacaaacgt tatctctgat
     9001 atggttcgaa aattagtcat gttttatccg aaatttactg tactgctgct cttgtttatt
     9061 ttcctttcag gaagtcttta tggccaaggg caaggcttag aaatggctta ttaccaggtg
     9121 cttcaaaaaa cggagcgtct agaaaatagt ggaaattacc aggcggctta tcaaagctgg
     9181 aatgagctcg ataccaaaga cttaaataga gatcaaaagg cgcaaagggc atttaagatg
     9241 gcctatttgg gcttagtcnn tgggctacaa ggaaggtcct ggagccatgc gtcgatttgt
     9301 tcgggaatat cctagtgcac cggaagtcaa gcgggcgtat actactgtgg ggcattatta
     9361 ttttactaaa ggccagtacg ccaatgcgct ggcgtggtat aaagacgccg aagggtttca
     9421 cgagctgaca gatcaacatc aatttgaaat cgcttatgct catttcaaac tcggtaattt
     9481 ctcccaggca acacgttttt ttgggccctt agaaaacagt cctcattatg ggtctagagc
     9541 actttattac agcgcctatg ttgattacga gaataaaaaa tggcaacagg ccttatctaa
     9601 attggatcga atagacttag agcagcgaga tgaccttgag gtatgggggc tgatggccga
     9661 tcttgctttt cgtacaaata atttcgaaca agcggccgcc tgggggattc gcgctttgga
     9721 tgcgatccag atttctggcg acaaaagaaa tatcaatcaa ggttctttaa atggccttgt
     9781 cggtcgggct tatgcacaaa tgggaaccca tgccattgcg ataaattacc ttgaaaaggc
     9841 ggtggataaa ccatcacggc aaaaggctcg cgatgaacac cttgaaaatc agttttattt
     9901 ggggcaggcc tacgcaaggc ttggtcagaa tgaaaaggcc gttgcggtat tgtctcatgt
     9961 taaagccgac gggctactcg ctcaggatgt ggcctatgtg ttggcggggg cttatcttgc
    10021 tcttgatcaa aaaacagagg cattaaatgc ctataaaaag gcctgtgaaa ccccagatga
    10081 gcgaccattt accgccaagg cttattatca atatgcaaaa ctcacctatg acttaagact
    10141 gagctacact actgttcccg cggttcttga gtcttttatt aaaagatatc ctcaggaccc
    10201 taagcgcggt gaagtcgagc aatggtggct cagtacactg ctcgagagcc aggattacga
    10261 tcaggtcatt gcctatctca gcacaccttc gcttttatcg gacaacgtaa tgggcgatga
    10321 gcggcaaagt gctttgcagc gggcgtattt tttgaaaggg cgtcaacagt acgatcaagg
    10381 cctttcttta gccgcacaaa attcttttca acaagcccaa aaaattaaaa caaattcttt
    10441 gatcggcgat caagccctat tctggtctgg cttaatttat gccgagtccg gagcctttga
    10501 aagtgccctt tcaatgtttg ataaattgac ggattctaag cggtttaaaa aagctcctga
    10561 atggtctatg ttgtcctatg aacaagcctt tgcacaaatg gcattaaaga attatgccca
    10621 agctcaagaa ggctttttaa attatctcaa acaaccaaag cccgtggtca aagaaaacga
    10681 agcgcgactc aatctggctg attgttattt tgcgtcgaag gcttatgaat tggccctagc
    10741 ccagtataat gcggtcctta acactggtgg tggaaatgag gattatgctg attttcaggc
    10801 ggcgatgtgt ctttccttta cccttggtct agaggcaaag acccaacgat tagtcaaatt
    10861 tttaaagacc taccccaatt cagtttatcg tgatcgggtg tatttaagtt tgggcagtgc
    10921 ttatgtcagt atggataaaa ttgcagcagc caaagcgcaa tacacccagc tgatttcaga
    10981 acaaaaaaac agtccgcttg tggcgtcggc ctatttaaac ctcgggctaa tttcggataa
    11041 caatagtgaa tttgaacagg cgttaaatta ttttaagtcc gtagtgaatt tatatcctgg
    11101 aacgcaagaa gctatttctg cggtgcagtc tgcaagaaat acatttattt ctctgggacg
    11161 cgtccaggaa tatgggttgt gggtcgatga attagatttt atttccattg atcaggccgc
    11221 actggatcag gcgtcgtttg agtcggccaa acaagcttat gcggcgcaaa atgatgcttt
    11281 gtccattgag cgatttgagg cttatttgga aaattattcc caaggacgat atgccttaga
    11341 ggcgcattat atcttatccg agatttattg gcgccaacaa gacgttacaa acgcactgtt
    11401 ccatgccgat tttgtgatcg ccgctgatga gaatccatcg tttattattc caacgctaat
    11461 tcgcgtcgcc cgccattatc tttcaaatca agaatttggt gcggcggaat cgtctctgat
    11521 caaacttttg gcccaacccc tagattcgga tcagcgcaca tttgccttga gtaatttaat
    11581 gcaaatgatg agtgatcaat cgcggtggca acaggccatt gattatgcga atgaactgac
    11641 cccgtattta tccaacaaca ctcaggaccc attgcgcgct caggcgcggc tcatcagtgc
    11701 gtggagttat tttgaattaa aagaatttga tttggctcgt gagcaataca aggatatgga
    11761 tgagttagca aaagggcatt atggcgctca attgaatttt gccaaggcct attttgctca
    11821 tttggatcaa gactattcgg ggtctaatga gcacattcaa aacctggctc agaattatgc
    11881 caattatatg gtctatggcg tgcggggatt aatgctgatg gccaaaaact ttgaagccct
    11941 atccgatcca tttcaggcgc gctttatttt agaaaatatt cgggacaata tgcacgattt
    12001 tccggagctg cagcaagagg ctatagagca tttggcaata atggatcaat caaaagacgc
    12061 tcaggaacct gaaaatagtg caggggcccc agaaatggat gggaccaaag agccttcgtc
    12121 aaatgataaa aatcaaaaga aacaaaatga ttaaggccct gatagatcat cttattcaag
    12181 gcattgtgcg cagacacaat ttgaccttaa ccctcacttt gtttaccctc ataggcagcc
    12241 aagttagggc acagaatact gcagatagca caggggtggc gacagaggtc gttgatgtgg
    12301 ttaaatccta tacgccgtcc attaatttgc gtccgaaaac caaatgggat tgggtgccag
    12361 aggagggaca ggaatcaaga ccagcgtttg cctataatca tgaaaatgtt aatttaagtc
    12421 cttctgattt gcctgccgta ttgcgtgctg tgggtcctgc aaaggaaatt acaccgagac
    12481 ctttgcccaa ttatttgcgg gtttggttgg gcacgcgctc atcagctggg ctagagggtt
    12541 ttgtaaatcg tgaattcaat cctgagtcct atttaaacct tgcttttgac catcaacaat
    12601 taaatgggac gattaagggc gttactttac ctacggattg ggccaaaagt ggtttgcggg
    12661 ctcaatggcg caccgagttg cagaatcgcc cgtcaatctt ggcattatcg gcaaatcgtt
    12721 cggccgtgca atggtatggg gttccggata ccttgagcct ggatcaatca gtgaataatg
    12781 actttggaca aacttatcag aaggccgctt tgcgtcatcg gttaggatct aatgggggct
    12841 ggtttactgg cctagatagc gagctatcgt ttttttctga tcgttatggg gtcaatgaat
    12901 ggagcttttc ttcatcccca agggctaagt taatttggga caaacgagtg ctctctttta
    12961 cggggaatat ttcctattta agcacaaggt tcagctatga ggatccccaa attaccgctc
    13021 aagattactn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntaccatgc gctaaacacg gatttggggg
    13141 tccaaacaga actggatttt ggcgatttga tggtcaattt gggtgccaaa ggatggggac
    13201 acaatggaac aagcaacacg acttttcgac tttttccaga gatcgaatta aattacccgt
    13261 tatggggacg aagtcttgaa gccaatttga gtttccgtgg ccagtacaaa caacacgaga
    13321 ctaattcttt ggtcaccatc caagcctttc tcgctccggg tgcgggattg cagccgcaaa
    13381 ttgataaaca gatcatgcga ttggggttta atggagcgat aaccgacctg tggcagtata
    13441 acttgggtgc agaattcaga aactttgaaa atcaagccta ttttattgga cgaccctggt
    13501 ctggtggaca gggggcttat gcttatgaca atggcaacag tttcgcggtg aattatgaca
    13561 gcggaaatga attaaaaata accgcaaaaa ttaatgggcg actttcacag caatgggata
    13621 ttgccttaga tgccgcaatg atcgacaacc gtcctgaaaa taatgcagaa ccttggaata
    13681 ttccaggatt cagctttggc ggctctggaa cttttcatgt gaacgagcag ttattactca
    13741 ccgcccaatt attaggttat ggcccgagaa aagaacagcg catggtggct gatcaaattg
    13801 ttgccgaaac ggtcaaaggc tttattgata cccaattaca tttgaattac gcgctcacaa
    13861 aaaatttcag cgccacgatt tcagggatta acctattgaa tcaaagtaat ggcctatggg
    13921 ccaattatcc ggtacagggc gtgcgcgtta atcttggact ccaatataat tttaatgcct
    13981 tttagacgca accaaatgga tctttgagcg tctttttgat gacttaaaaa agtgattcgt
    14041 taagtttagg gtttaataat caaagcacct cttgaaagtg gggtgctttt tttatcttta
    14101 gttcaaaatt ggcttatgat tattcgagtt ttaggagttt gtattgttgc gattgtcgtc
    14161 ttcgggtgtc aaaaaaaaca agaggttgat ttaattgttt ttaatgctca agtcattacc
    14221 ctagacgata atgctccaga ggctcaagcc tttgcggttg atcaaggaaa gcttctttat
    14281 gctggatccg acgagcaagt tttcgatcga tatgaatcta aaaagaattt agatgcccaa
    14341 accaaagtga ttatgcccgg gatcattgat gcccatgcgc atttctatca gttgggcttg
    14401 ggacttcaag aggtggatct caggggaaca acatctaaag aggaggtcat aaagcgaatt
    14461 tctgattttg tgccgtatca aaacgctgag tttattgtgg cgcggggctg ggatcaaaat
    14521 gattggatcg atcagtctta tcccaccaaa gaggatttgg acgccgtatt tccagaggtg
    14581 cctgtagctt tgcaacgtgt cgatggccat gccctatggg tcaattcaaa agcattgagc
    14641 atggcaggaa ttaatcgatc gggaccggtt ccaggaggta tgattatggg tgatgcggga
    14701 ggaaatccta caggtatttt agtcgatgcg ccttgtgacc gtgtccttga attggttcct
    14761 gaaccgacca ttgagatctc gactcaggcc ttaatttcag ctgagcagta ttgtttttca
    14821 atgggcctta cgggtgttca tgacgcagga ctcagaagac ctgttatcga actgattgat
    14881 cgcctgcaag aggcgggagc gttcaaaatg aaaatagagg ccatggttgc taacatagag
    14941 cctgatgtaa gttattattt ggacaaagga ccgctggtga aacaccgatt acgcgtaggg
    15001 gcaatcaaag tatatgccga tggggctttg gggtctcgtg gagcggcact gcgcgaaccg
    15061 tacagtgatg ccccggaaca ttttggggca attataaccc caatggatga attagaggct
    15121 ttggctgatc gggcgcttaa ggcaggcttt caggtcaata cccatgcgat aggcgactca
    15181 gccaatgtat ccgtgcttcg ggtttatcaa gaggcattgg ccacgcacat aagggctcag
    15241 gacgaaaatg ttcgttggcg cattgaacac gctcaagttg ttccgccaga ttattttgag
    15301 gcattttcaa aaaatattat tccatcagtt caacccactc atgccaccag cgatatgtat
    15361 tgggtcgaag agcgccttgg tgaaggcagg atgaaggggg cttatgccta taattcgctg
    15421 ctggcaaagg ctggaatact ggcgcttggc actgattttc cggtagaata tgtcaaccct
    15481 atgctgacct tgtcatcggc agtctatcga agagatacgg ccggttatcc ggaatcagga
    15541 ttttatcccg accagggaat tactcgagaa caagccctta aagggatgac cctttgggcg
    15601 gcttatgcga attttagcga aaatcaaaga ggaagccttc aatcagggaa agatgcagat
    15661 ttcattcttc tggatcgaaa tccattgact tgtcccctag aggaactctc agaaattaag
    15721 gtgcttaaaa cctatattga tggagagagc gtctatgact cagagcgccc ctttggcttg
    15781 taagtcctgt aagcactgga catcgagttg cggtacagcg cgcaattgag tccatcggtt
    15841 taacatttgt cgcccgacat ttgtcgcatc ataatacatc aaacaatctt catgcaaaca
    15901 gtgtttttca ctattggggt cttcgtggac ttgatgaata tcgtcgttct gaatattgac
    15961 cagccccata aggtggccca tctcgtgatt gagcgtcgtt tgttctaaga tgggtaaaac
    16021 atccggatcc gtttgggtga tcaattccag tgttttttga tagattacta tcgacgtatt
    16081 tcgataggcg gtacccaaag ttacggagtt atttgtgtca ttctcagagg cgccattgga
    16141 gaaaaatacg tacaccccaa ggttgtttcc ttctgtgtaa accgtacgat tggcctcttc
    16201 aatggcccga atctcctcga tggaaaaagg ggctccaggc tgattcggaa ttacgcgttc
    16261 tataaattgt acgnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnta aattgtacgc
    16321 cctgtggttt attggctagg cctaatacaa agttcttaaa cccaagaata cttgagggtt
    16381 caggacgaaa agaattcgtg taaaccaatt ctacggtcaa caagccgtat tcatttggcc
    16441 cgaggatgtc cgctgcagaa gtgcctaacg gacgattgtt ttcaatgttt gggtcgtttg
    16501 gtgtgtttga ttcgtcactg ctgcaactgt ggatcagtac tgcgagaaat aggaataggg
    16561 aaaatgaccc gaaatagcgc attgattgtt tttttggtaa cttcggcaaa cttagtttaa
    16621 ttgtcatgat tagaaaaatg cgcgctttta ttttaacggt attttgtatt tcccaagggg
    16681 ttttatgggg gcaaacggac gattttcatc gtgaaattat ggacatgatg gcgttgaaag
    16741 gagatgaggt tacggcaagt gttagctttc acgatgtatt tccaaagctt cagcggaatt
    16801 ttgcccgtaa aaaaattgag cctgaggttt ggcaagagct ccaacaagat gaagcgcaac
    16861 aagtacagga atatgtgact caaggggcat ttgcctatcg tcagtttttg aatcgagatg
    16921 acgtggcctc tttgactaat ttttatgcta gcgatgccgg tcagaactat ttaatgcagc
    16981 aagaattaag tgctaaagat caaaaagcgg taaatcaatt ttttaaaaca caggctggtc
    17041 taaaattgat cgaaaaaagg gattcaatcg ctttggcctt agatcaaata aaaaaggatt
    17101 ggtctgagac cttgtttaag aaaaaaatgc gccaactcat aaaaggagga catttgaaga
    17161 attgagtcgc tagggcatca gcttagcgag gtaatcataa tgggcgcctt catgtaaaat
    17221 ttcgaaggtc cagccattag attctgctaa atgggcgaaa agatgcttat ccaaaaataa
    17281 ccaagggaat ttttcgctga attctttttt ataacgcaat ctgaactcta gctcgccata
    17341 gtaacggtcc gctggaaccc atatcgcttc atcgtcaccg gtgtcgtaca tatagcgcaa
    17401 atcactggaa tcaattaaaa gcatcccttt cggatttaaa agggttttga gtttgttgag
    17461 gtaggccgga acgctctcga gcgattcaaa aattccggtg ccattcataa gcataataat
    17521 cgtgtcgaag cgctccccat cgtaatccaa aagtgaggtt tcagtgactt gagccacacc
    17581 ccgggattgt gcgatttgga ccgctccttt agataaatct atggaccgaa cttcgcgacc
    17641 taggttttga agatagagac tatgactgcc tgc
//
LOCUS       DPUP01000188            3497 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_26058,
            whole genome shotgun sequence.
ACCESSION   DPUP01000188 DPUP01000000
VERSION     DPUP01000188.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3497)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3497)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3497
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..475)
                     /locus_tag="DHV98_07110"
     CDS             complement(<1..475)
                     /locus_tag="DHV98_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008637092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidyl-peptidase"
                     /protein_id="HCK06110.1"
                     /translation="MMRLIKLSLCTLALLAAGLLSAQNKAVPVFKDGLAQIVEEFSDQ
                     SQWMRHDLWVETEFDSDFDGQLDRMHVSVTRPKQTDTEGLKLPVIYVTSPYFAGVAGD
                     VPGSFWDVHQELGEDSPPHIHPEVKRVGERPIISNSHIKTWVPRGYIVVHSSSPGT"
     assembly_gap    573..711
                     /estimated_length=139
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<712..>1118)
                     /locus_tag="DHV98_07115"
     CDS             complement(<712..>1118)
                     /locus_tag="DHV98_07115"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06111.1"
                     /translation="PLAEDSSAVQKNIIFDFIWNQPESNLYSTPLAYIFEPNGPLRKI
                     GQYAALTQRFPILRIGPNAHLFTAEQWMDFPGRIFEVLDKWPFAKSEMKRFKGRKYNI
                     TTRDFPQTVAHIRATWQIKDGGQEYLFFTTDAR"
     assembly_gap    1119..1174
                     /estimated_length=56
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1175..>1675)
                     /locus_tag="DHV98_07120"
     CDS             complement(<1175..>1675)
                     /locus_tag="DHV98_07120"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06112.1"
                     /translation="VDAYALAQSGARVHHFELDESLSNLVAHNMRKLKAEVLCHHADG
                     VKGLLELKLPVDLIYLDPARRDAQKNKVFRLEDCRPDILFHLEDLLAKSPYVLLKTSP
                     MLDLHLGLTQLKWVREIHVVAVNNEVKEVLWLISRSAGQEDKTLPPRDLTDNKNPKVY
                     AVNLSDE"
     assembly_gap    1676..1918
                     /estimated_length=243
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1919..2237)
                     /locus_tag="DHV98_07125"
     CDS             complement(<1919..2237)
                     /locus_tag="DHV98_07125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06113.1"
                     /translation="MTQDQNAINPMLLSPEVQRWIRTTRASLDEIAFAPLPFEGLSRQ
                     ELIQQVEGYRKAVDKLPRWGAQPGLLFPVKLSLEQCSSEATARYKAQVIKNNLEFHPK
                     EIAD"
     gene            complement(2248..2892)
                     /locus_tag="DHV98_07130"
     CDS             complement(2248..2892)
                     /locus_tag="DHV98_07130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015363078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06114.1"
                     /translation="MKHFLFLLASLLISTGIQSQTLGVLKYSGGGDWYSNPTALPQLI
                     EFCNEHLGTTLEPQIKTVSLDSDALFDLPWIHMTGHGNVFFSESEIETLKAYLLGGGF
                     LHIDDNYGMDSYIRPILSGLFSEAPLIELPTTHPIFTEFYKFPEGLPKIHAHDNKPPQ
                     AFGIILEGRLALLYTYESDLSDGWEDPRVHNDPEQVREKALQMGANMIHYVFSH"
     gene            complement(2902..>3497)
                     /locus_tag="DHV98_07135"
     CDS             complement(2902..>3497)
                     /locus_tag="DHV98_07135"
                     /inference="COORDINATES: protein motif:HMM:PF04452.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HCK06115.1"
                     /translation="TLFRSGLEAWGTITQANPKACLVRIDRTRQHPEPKTQIHVAIAP
                     TKQMERLEWFVEKATELGVTRITPVICHHSERKALRLDRLEKRRDAALKQSLSFHGVR
                     IDPVCTMDDFLNNNFNNTDCYIAHCIQEIPDHLIHVSQKHHKTLVLIGPEGDFSPQEV
                     QKALEQGFKPVSLGARRLRTETAGIAAVQLLGIKAIL"
BASE COUNT          786 a          687 c          729 g          857 t
ORIGIN      
        1 ctgtacccgg cgaggacgag tgcaccacga tataaccgcg gggcacccaa gttttgatat
       61 gcgaatttga gatgatcgga cgctcgccga cacgctttac ttccggatga atatgcggtg
      121 gcgaatcttc cccgagttct tggtgaacat cccaaaagga gccaggcaca tctcctgcaa
      181 ccccagcaaa ataaggactt gtaacataga tcacgggtag ttttaagcct tctgtatccg
      241 tttgtttggg tcgggttacc gatacatgca tccggtctaa ttgaccatcg aaatctgaat
      301 caaattctgt ttccacccac agatcatggc gcatccactg gctttgatct gaaaattcct
      361 ctacgatttg ggccaatcca tctttaaaaa caggaacggc tttgttttga gcactgagaa
      421 gcccggcagc caataaggct agggtgcata gcgatagttt aattaaacgc atcatagttt
      481 gcattatatt tttgggtatt gggttgcttt acgacacaag ataatccatt ttattcctcg
      541 ggcatctgta gtgaaaaaca aatattcctg acnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn natacgggca
      721 tctgtcgtga aaaacaaata ttcctggccg ccatctttta tttgccatgt cgctcgaatg
      781 tgggccacag tttgagggaa atcacgagtc gtaatattgt atttccggcc tttaaaacgc
      841 ttcatttcac ttttagcaaa tggccattta tcgagcactt caaagatgcg ccccggaaaa
      901 tccatccatt gctccgcggt aaaaagatgg gcatttggcc caatgcgcaa gatcgggaat
      961 cgctgggtga gtgcggcata ctgcccgatt tttcgcagcg gcccgttggg ttcaaaaata
     1021 taggctaggg gcgtactgta taaattggac tccggttgat tccatataaa atcaaaaatg
     1081 atgttttttt gaaccgcgct ggagtcttca gccaagggnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnctcatc actgagattt accgcgtata
     1201 cttttgggtt tttattatcg gttaaatcgc ggggaggtag agttttgtcc tcttgtcccg
     1261 cactgcgact gattaaccat aaaacttcct ttacctcatt attgacggcc accacatgga
     1321 tttcacgaac ccatttcagc tgtgttaggc ccaggtgtaa gtcgagcatt ggcgaagttt
     1381 tgagcaacac ataaggactc tttgctaata agtcctccaa gtgaaacaaa atatctggac
     1441 gacagtcttc aagacgaaaa actttatttt tttgggcatc gcgccgggct ggatccaaat
     1501 aaattaaatc tacgggtagt tttaactcga gaagaccctt tacgccatcc gcgtgatgac
     1561 agaggacctc agctttgagt tttctcatgt tgtgtgcgac caaatttgac agagattcat
     1621 cgagttcaaa gtgatgaaca cgtgcgccac tttgcgctaa agcataggca tcgacnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnngg
     1921 tctgcaattt ctttggggtg aaattctaaa ttgtttttaa tgacctgggc tttgtagcgt
     1981 gcagtggcct ctgaggagca ttgttctaaa gataatttga ccggaaaaag caagcccggt
     2041 tgtgcgcccc aacggggcaa tttatccacg gccttgcgat aaccctcgac ctgttgtatt
     2101 aattcttgac ggcttaggcc ctcaaagggt agtggggcaa aagcgatttc gtccagggaa
     2161 gcccgggtcg ttcgaatcca tcgttgaacc tcggggctta acagcattgg atttatggca
     2221 ttttgatctt gggtcattaa cgggtcatta atgagaaaaa acgtaatgaa tcatattggc
     2281 tcccatttgc agtgcttttt cgcgtacttg ttctggatcg ttatggactc taggatcttc
     2341 ccatccatcg ctaagatctg actcataagt atacaataac gcgagtcttc cttctaggat
     2401 aatcccaaag gcttgaggcg gcttgttgtc gtgggcgtga atctttggca ggccctcagg
     2461 gaacttgtaa aattccgtga aaatgggatg cgtggtaggt aattctataa gcggtgcctc
     2521 agaaaataat ccactgagta tggggcggat gtaggaatcc attccgtaat tgtcatcgat
     2581 gtgcaaaaac ccgcccccga gaagatacgc cttgagggtt tcaatttctg actctgaaaa
     2641 aaatacattg ccgtgaccgg tcatatggat ccaaggcaaa tcaaaaagtg cgtcgctgtc
     2701 cagggacacc gtttttattt gcggctcaag tgttgtaccc agatgttcat tacagaattc
     2761 tatgagttgg ggcagagcag tggggttgct ataccaatcg ccacctcctg agtattttaa
     2821 cacccctaag gtctgggatt gaatcccggt gcttatgagg aggctggcaa gaagaaaaag
     2881 aaaatgcttc atgagacaaa tctaaagaat cgctttgatt ccaaggagtt gaacggctgc
     2941 gattcctgcc gtttctgtgc gcaacctgcg cgcacccaag gacaccggtt taaacccttg
     3001 ttctaatgct ttttgtactt cctgcgggct aaaatcaccc tctggaccaa ttaagactaa
     3061 ggtcttgtgg tgcttttgag acacgtggat cagatggtcc ggaatctcct gaatgcagtg
     3121 ggcaatataa caatctgtat tattgaagtt attgtttaga aaatcatcca tagtgcacac
     3181 aggatcaata cgtacaccat gaaaactaag ggattgtttt aaggccgcgt cgcgtcgttt
     3241 ttccaatcga tccaaacgca gtgccttgcg ttcactatgg tgacagatta ccggcgtaat
     3301 tctcgtaacg cctaattcag tagccttttc aacgaaccat tccaagcgct ccatttgctt
     3361 ggtgggcgct atggcgacat ggatttgtgt ttttggctcg gggtgttgtc tcgtgcggtc
     3421 gatacgcacc aaacaggcct ttggattggc ttgagttata gtcccccaag cctctagccc
     3481 agatcggaag agcgtcg
//
LOCUS       DPUP01000189            3005 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8802,
            whole genome shotgun sequence.
ACCESSION   DPUP01000189 DPUP01000000
VERSION     DPUP01000189.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3005)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1327
                     /locus_tag="DHV98_07140"
     CDS             <1..1327
                     /locus_tag="DHV98_07140"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06116.1"
                     /translation="GGQSLKIKGMANVLGQILGLETYGMPLPGQRHKIAYFKSKSLWW
                     NYYNRYVTNNNSRGPMDRVPGGWFPTTTILAKSMIQSTPCEWIIGQVCINDWIISAID
                     HVNSFIPSVSALGLINPNIDWAAALSKNLICDESIPFDSYFGPKDNEQHTSFTEKSVV
                     WLLEELAGNPQRPSVYLDVNDLSGPDALCLSGPNTFSFDSCVAPEVIDWNVSNNLNIV
                     HSDQHSISVEVTTQTNHEGFIEAIFSDQTLRKNFWIGTPGPSPLLEGPETVRTGSTVT
                     YSAQQAPGATRYQWYLPYPFDVQAPFDYTSTNWQVPPDAGRNTQVFTGYGGYNGLVQV
                     MGVNDCGPGDATIKSVIHGNNGSGQQQSPIFPYPNASDDAFHLDFSRLGAGSYSINIF
                     DALGQNVYSGQSSNVEKTINTLSIDGGTYFLHVSDGEQLWQFQLIIDHQ"
     gene            1462..1737
                     /locus_tag="DHV98_07145"
     CDS             1462..1737
                     /locus_tag="DHV98_07145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012023920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HCK06117.1"
                     /translation="MALKIQPLSDRVVVEPQAAETKTASGIYIPDSAKEKPQQGTVVA
                     VGKGKKDHEMTVAVGDTVLYGKYAGNELKLDGKDYLIMREDDILAII"
     gene            1756..>3005
                     /gene="groL"
                     /locus_tag="DHV98_07150"
     CDS             1756..>3005
                     /gene="groL"
                     /locus_tag="DHV98_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HCK06118.1"
                     /translation="MAKDIKFDIEARDAIKRGVDALANAVKVTLGPKGRNVIISKSFG
                     GPQVTKDGVTVAKEIELEDALENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVKEG
                     LKNVAAGANPMDLKRGIDKAVRALVADLEKQSTKVGNSSEKIQQVASISANNDEAIGS
                     LIAEAFGKVGKEGVITVEEAKGTETYVDVVEGMQFDRGYLSPYFVTNSEKMHTELENP
                     MILLYDKKISNMKDLLPVLEPVAQQGKSLLIIAEDVEGEALATLVVNKLRGSLKIAAV
                     KAPGFGDRRKAMLEDIAILTGGTVIAEERGFTLDNATIDMLGTAERVTIDKDNTTIVN
                     GAGKKADITARVGQIKSQIETTTSDYDKEKLQERLAKLAGGVAVLYVGAASEVEMKEK
                     KDRVDDALHATRAAVEEGIVAGGGV"
BASE COUNT          923 a          634 c          699 g          749 t
ORIGIN      
        1 cggaggacaa agtttaaaaa tcaaaggtat ggccaatgta ttaggccaaa tattgggcct
       61 tgaaacttac ggcatgccgc tgcccgggca gcggcataaa atcgcctatt ttaaatccaa
      121 atcactttgg tggaattact acaatcgtta tgtcaccaat aataattccc gcgggccgat
      181 ggaccgtgtt ccaggcggtt ggtttccaac gacaacaatt ctggcaaaat caatgataca
      241 atccacgccg tgcgaatgga tcattggtca agtgtgtatc aatgactgga tcatcagtgc
      301 catagatcat gtaaattcgt tcatcccttc agtgagtgcc ttgggcttaa taaatcctaa
      361 tatcgattgg gctgccgcat tatcgaaaaa tttaatttgc gacgaatcta ttccttttga
      421 cagttatttt gggcctaaag acaatgaaca acatacctcg tttacagaaa aaagcgtcgt
      481 ctggttgctt gaagaactcg cgggcaatcc acaaaggcct agtgtttatt tggatgtaaa
      541 cgaccttagt gggcccgatg cactttgttt gtcaggacca aatacttttt cgtttgattc
      601 ctgtgtcgcc cccgaggtaa ttgactggaa tgtatcgaac aacctaaata ttgttcactc
      661 ggaccagcat agcatttctg tcgaagtaac cacgcaaaca aaccatgagg gttttatcga
      721 agcaattttt agtgatcaga ccttaagaaa aaacttctgg attggcacac cgggtccctc
      781 tcccttactt gaaggcccag aaaccgttag aactggaagc accgtgacct attcagccca
      841 gcaggcccct ggggcaacac gctatcaatg gtacttgccc tatccatttg atgttcaggc
      901 gccctttgac tacacctcta ccaattggca agtccctcca gatgcgggac ggaacactca
      961 ggtttttacg ggttacggag gctacaacgg tcttgtccaa gtgatgggag tgaatgattg
     1021 tggcccaggt gatgccacca taaaatcggt catccatggt aacaatggct caggacaaca
     1081 acagtcgccc atctttcctt atccaaatgc ctcagatgac gcctttcacc ttgactttag
     1141 tcgattgggg gcaggcagct atagcatcaa tattttcgat gccctaggcc aaaatgtata
     1201 cagcggtcaa agcagtaatg tcgaaaaaac aatcaacaca ctttccatag atgggggcac
     1261 ctatttttta catgtctcgg acggtgagca actttggcag ttccagctca ttattgatca
     1321 ccaatgacag attgcgtata acgtaaaaaa gaaaaatgtc aatttgacac attcccttgc
     1381 ccagtatcct gtcaaaaatg ccatggcaca gtttatgtct attggtagaa acaaacataa
     1441 attaacttaa atcatttaca tatggcttta aaaattcaac cactttcaga tcgcgtggta
     1501 gtcgagcccc aggcggcgga gactaaaaca gcatcgggaa tttacattcc ggattcagct
     1561 aaagaaaaac cgcaacaagg aactgttgtt gctgtaggca aaggcaagaa ggatcacgaa
     1621 atgaccgtag ccgtgggcga tacagtttta tatggcaaat atgcaggaaa tgaattaaaa
     1681 cttgacggca aagattatct catcatgcgt gaggacgata ttctagccat catttaatct
     1741 ttaaaattta caactatggc aaaagacata aaatttgaca tcgaggcaag agacgctatt
     1801 aaacgtggtg ttgacgcttt ggcaaacgca gtaaaagtta cccttggacc aaaggggcgc
     1861 aatgtaatca tcagcaaatc attcggtgga ccgcaagtca ctaaggacgg cgtcaccgtg
     1921 gcaaaagaga ttgagctaga agatgccctt gaaaacatgg gggctcaaat ggttaaagaa
     1981 gttgcttcta aaaccaatga cttggctgga gacggaacca ctacagcaac tgtattggct
     2041 caagctattg tcaaagaagg actaaaaaat gtcgcggcgg gtgctaaccc aatggatcta
     2101 aaaagaggga ttgacaaagc cgttagggct cttgttgctg acctagaaaa acaatccact
     2161 aaagtgggga actcttctga gaaaattcag caagttgctt caatttcagc aaataacgac
     2221 gaggcaatcg gaagtcttat cgctgaagct ttcggcaaag ttggtaaaga aggggtcatt
     2281 actgttgaag aggccaaagg aaccgaaacc tatgtcgatg ttgtggaggg gatgcaattt
     2341 gatcgcggtt acttatcgcc ctattttgtc accaacagtg agaaaatgca caccgagtta
     2401 gagaacccga tgatattgtt gtacgacaaa aaaatcagca atatgaaaga cttgttaccg
     2461 gttttagagc cagtagcgca acaaggcaaa tcgcttttga ttattgcaga ggatgttgaa
     2521 ggggaagcac tagcgacttt agttgtgaac aaattacgcg ggtcactaaa aatcgctgcg
     2581 gttaaagcac caggtttcgg agatcgtcgc aaagcgatgc tcgaggatat tgccatctta
     2641 actggaggaa ccgtaattgc agaagaacgc ggatttaccc ttgataacgc gactatcgat
     2701 atgttgggaa ctgctgaaag agttaccatt gataaagaca atacaaccat tgttaatggc
     2761 gctggtaaaa aagcagacat aacggcccgt gttggtcaaa ttaaatctca aattgaaact
     2821 acaacaagtg attacgataa agaaaagctt caagagcgct tggctaaact agccggtggc
     2881 gttgccgttc tttatgttgg tgctgcgagt gaggttgaaa tgaaagagaa aaaagaccgc
     2941 gtagatgacg cccttcatgc cacgcgcgct gcagtggagg aaggaattgt tgccggtggc
     3001 ggcgt
//
LOCUS       DPUP01000190            2897 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12790,
            whole genome shotgun sequence.
ACCESSION   DPUP01000190 DPUP01000000
VERSION     DPUP01000190.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2897)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2897)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2897
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..864)
                     /locus_tag="DHV98_07155"
     CDS             complement(<1..864)
                     /locus_tag="DHV98_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HCK06119.1"
                     /translation="MSHNSLQAITPIDGRYASKTKSLIPYFSEAALIQYRVRVEIEYF
                     LALVALPLPQLKGFDLTKAESLREIYKDFGPEQAAAIKEIEAVTNHDVKAVEYFIKER
                     FDALGLSAHKEFIHFGLTSQDINNTAIPLSMMEAINDIYIPQLQALTDQLKTYAHEWS
                     EVPMLAHTHGQPASPTRLGKEIHVFVTRLEEQMAGFSHLKHAAKFGGATGNFNAHHVA
                     YPQIDWKKFGQNFVEHILGLNHSFPTTQIEHYDHMAALFHQMERVNTIILDLNRDLWT
                     YISMRSEEHTSE"
     gene            complement(1013..1393)
                     /locus_tag="DHV98_07160"
     CDS             complement(1013..1393)
                     /locus_tag="DHV98_07160"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06120.1"
                     /translation="MMALKNFKAIAHVLPDLALQLTHFKSDSSQRALLHMMSLWLAPL
                     TVTKSLDKKTREASTEHCFDKLIGAPEAAIAVQAHAMSCLYYLSRVNSWIEEPLRAIL
                     IKNMPQQSPGFRARARHILANLNE"
     gene            complement(1390..1599)
                     /locus_tag="DHV98_07165"
     CDS             complement(1390..1599)
                     /locus_tag="DHV98_07165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06121.1"
                     /translation="MTMIDLSPDLRDYSLICTIRMDIWTHIEFDRATRANREKSALWM
                     LDHLERLAELLNALGQQDXQPIFLK"
     gene            1651..2304
                     /locus_tag="DHV98_07170"
     CDS             1651..2304
                     /locus_tag="DHV98_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HCK06122.1"
                     /translation="MTPELLTYLQSLLAPRRRDLFSQVLEERTRHFTVVTEDIYQMHN
                     TSAVMRSCDVFGIQDLHVIEARFGKRVDKEIAMGAQKWVDIHRHSNTEDCLKQLRAQG
                     YQIVATTPHDGVPLDVFDVSRKSALLFGTEKKGLSPELMAQADVALTIPMYGFTESLN
                     ISVSAAIILNELVGRMRREEAPWALSPQERYDLECAWTVASIKDAPRIIERYNQENA"
     gene            2304..2888
                     /gene="rdgB"
                     /locus_tag="DHV98_07175"
     CDS             2304..2888
                     /gene="rdgB"
                     /locus_tag="DHV98_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011708993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP pyrophosphatase,
                     RdgB/HAM1 family"
                     /protein_id="HCK06123.1"
                     /translation="MTLIFATHNAHKYKEVKAQMPAGLDLLYLADITHEPPVEETALT
                     LQGNAEIKMLALAQSTGQNCFADDTGLEVAALNGAPGVYSARYAGPEARDQDNVQKLL
                     NALVGHLNRKAQFRTVIALYWNGETHFFEGVCHGTILETPRGHQGFGYDPVFLPEGHT
                     QTFAEMDLVQKAQISHRGIAMKKLIDWLSVRDLQ"
BASE COUNT          769 a          630 c          702 g          794 t
ORIGIN      
        1 ttcagacgtg tgctcttccg atctcatgga aatataggtc cataaatcgc gattcaaatc
       61 aagaataatc gtgttgacac gctccatttg gtgaaataag gcggccatat gatcataatg
      121 ctcgatctgc gtggtcggga aggagtggtt cagtcctaaa atatgttcaa caaaattttg
      181 tccaaatttt ttccagtcga tctgagggta agccacatgg tgggcattga agtttccggt
      241 agcgccacca aattttgccg cgtgtttgag atggctgaat ccagccattt gctcttctaa
      301 gcgggtgaca aaaacgtgaa tctctttgcc caagcgggtt ggtgatgcgg gttgaccgtg
      361 tgtgtgggcg agcatcggga cttcagacca ctcatgcgca taggtcttaa gttgatcggt
      421 tagcgcttgg agttgaggga tataaatgtc attaatggct tccatcatgc tcaatggaat
      481 tgccgtattg tttatgtctt gagaggtaag gccaaagtga ataaattctt tatgcgcgct
      541 cagtcctaag gcatcaaatc gctctttaat aaaatactcg acagccttta catcgtgatt
      601 ggtcacggct tcaatttctt taatcgctgc agcctgttca ggaccaaaat ctttgtaaat
      661 ttctcgtagg gattctgctt tggtcaaatc aaaacctttt aactgcggca gtggtaaggc
      721 gacaagggcc aaaaaatact cgatttcaac gcgtacccga tactgaatca gcgcggcttc
      781 tgagaaataa ggaataagac ttttggtttt tgacgcataa cgcccatcga ttggtgttat
      841 ggcttgaaga ctgttatgtg acatcgtttt gcgattcaaa aagcaaagat aatcatcacc
      901 catgagttga cccacggcag aggggatttt ttaaatattt ctcgataaag tcaccccgga
      961 aaagatttac cctttgatga gcgccaaaga cgcaagggtc ccgccggcgt aactattcat
     1021 tcaaatttgc aagaatatgg cgcgctctgg cgcgaaaacc gggactttgt tgcggcatat
     1081 ttttgattaa aatagctctg aggggttcct caatccaaga atttacccga ctcagataat
     1141 acaaacagct catggcatga gcttgaacgg caatcgctgc ctctggcgct ccaatgagtt
     1201 tatcaaaaca gtgttccgtt gaggcttctc gtgttttttt gtctagactt ttggtcactg
     1261 ttaagggcgc gagccacagg ctcatcatgt ggagcagtgc gcgttgtgag gagtccgatt
     1321 taaagtgggt gagctgaaga gcgagatcag gcaatacatg agcgatggct ttaaagttct
     1381 ttaaggccat catttcaaga atataggctg nntatcttgt tgccctagag cgttgagcaa
     1441 ttccgcaagg cgctctagat ggtcaagcat ccacaaagcg gacttttcgc gatttgcacg
     1501 cgtcgctcta tcgaattcaa tatgggtcca aatatccatt cttatggtgc aaattaacga
     1561 ataatctctt aggtctgggc tcaggtcgat catggtcatg gcttttctct ttggcctaat
     1621 tcattatctt gcaatccata tatttacagc atgaccccgg aattattgac gtacttacaa
     1681 agtcttttag ccccgcgtcg ccgtgaccta tttagtcagg tgctcgaaga gcgtacgcga
     1741 cattttactg tggtcaccga agacatatat cagatgcaca ataccagtgc ggtcatgcgc
     1801 agttgcgatg tttttggcat acaagattta catgtgatcg aagcgcgatt cgggaaacgt
     1861 gtcgataaag aaattgccat gggggcccaa aagtgggttg atattcatcg acattccaat
     1921 accgaagatt gcctgaaaca attgcgcgct cagggctatc aaatcgtggc aacaacgcct
     1981 catgatggtg tgcccctcga tgtttttgac gtttcgcgca agtccgcctt gctctttggc
     2041 accgagaaaa aaggactgag cccagaactg atggctcagg ccgatgtggc ccttaccatc
     2101 cccatgtacg gatttaccga aagccttaat atttcggtat ctgcagcaat tatcctgaat
     2161 gaacttgtgg ggcgtatgcg gcgggaagaa gcgccatggg cattaagtcc acaggagcgt
     2221 tatgatttag aatgcgcttg gactgtggct tcaatcaaag atgccccaag aataattgaa
     2281 cgatataatc aagagaacgc ctgatgactt taatttttgc gacccacaat gcccacaagt
     2341 ataaagaggt aaaggcccaa atgcctgctg gtttagattt gctttatttg gccgatatca
     2401 cccatgaacc gccggtggaa gaaacggcac ttacccttca gggaaatgct gagataaaaa
     2461 tgttagccct ggcccaaagc acggggcaaa attgttttgc agacgacacc ggccttgagg
     2521 tggctgcctt gaatggcgcc ccaggggttt acagtgcgcg ttacgcaggt ccagaggctc
     2581 gagatcaaga caatgttcaa aaattattaa acgccctggt cgggcatctt aatcgaaagg
     2641 cacaatttcg tacagtcatt gccctttact ggaatggcga aactcatttt tttgaggggg
     2701 tttgtcatgg aaccatactt gaaaccccac gggggcacca ggggtttggt tatgatcctg
     2761 tttttttacc agagggccat acacagacct ttgccgagat ggatttagtc caaaaggcac
     2821 aaatcagtca tcgagggatt gccatgaaaa agctaatcga ttggctttct gtccgcgatt
     2881 tacaataaat tttcaag
//
LOCUS       DPUP01000191            2578 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_32851,
            whole genome shotgun sequence.
ACCESSION   DPUP01000191 DPUP01000000
VERSION     DPUP01000191.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     assembly_gap    181..388
                     /estimated_length=208
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            418..1311
                     /locus_tag="DHV98_07180"
     CDS             418..1311
                     /locus_tag="DHV98_07180"
                     /inference="COORDINATES: protein motif:HMM:PF13181.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06124.1"
                     /translation="MDLTNVDGRVFYEDSIKVTLHDVYLMGKHANVMGTIEWFVMGEN
                     TFYRNFSGVVTKNDGQLQWERFVGTDNSAGSSGFVWPTTEIEGGNRAFRDMRMAMMNL
                     DNERALALSDSLVEVDPNWATAHLGQMHYYWFEADKDNFFAAKEAAMSKIDNASRAEA
                     HLIKSYDLDRDTRLSELRSAMMFAPVDPMVRVWYAFNEQDKELARDVVQIAWNRLPQN
                     GAVNNMMGYIYMDLEDMEKAQLHFELFMRANPDVTNAYDSYGDFYAELGDNEKAKEMY
                     MMAYAKDSTWTASKEKAEALK"
     gene            complement(1366..>2578)
                     /locus_tag="DHV98_07185"
     CDS             complement(1366..>2578)
                     /locus_tag="DHV98_07185"
                     /inference="COORDINATES: protein motif:HMM:PF03441.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="deoxyribodipyrimidine photolyase"
                     /protein_id="HCK06125.1"
                     /translation="GVQVTWERDKSVAHWCKIHGVQWSEFQQNGVQRGLSHRKDWVKD
                     WYTTMSQPIITNRFSRQNPEILSRITALESLYPWDIKDPGTPRDVQVDDNLSAAIFQE
                     NPAQMQPPGQSRGWKYLKSFAQDRGANYARHISKPEQSRVSCSRLSPYIAWGNLSVRQ
                     VYQYIYTHPNKSRYKRSFEAMLTRLRWHCHFIQKFEVQCDYETHCVNPGFESMPHQNN
                     PEYLAAWKQGRTGIPLVDANMRALQATGWINFRMRAMLVSFLVFNLDQDWRHGVYYLA
                     QLFLDYDPGIHYSQFQMQAGTTGVNTIRMYNPETNSLKHDPEGVFIKKWVPELRDLPG
                     DLVHAPWQLSELEQAMYGFTLGKDYPKPIVDLNQSAKSARDKIWSYRKTPAVQQGKNQ
                     ILKTHVIPRSK"
BASE COUNT          624 a          520 c          561 g          665 t
ORIGIN      
        1 aacaaaacca atttaaatga aaaatttctt tttattgggc gcgacattaa tattcgcagc
       61 ctgcagtgct cccaacctta cagaatctga ggtccgggat tttgccatca gtcatattga
      121 aaatcaagtc ggtctggacg atgctgcgcc gggctatgta gctggtatcg cagaagacgc
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnat ccgttttggc gcaatacccc acgcacaatg
      421 gacctcacta atgtagacgg acgtgtcttc tatgaggatt caattaaagt aaccctacac
      481 gatgtttatc taatgggaaa acacgctaac gtcatgggaa ctattgagtg gtttgtcatg
      541 ggcgaaaaca ccttttaccg gaacttctca ggtgtggtga ccaaaaatga tggacaattg
      601 caatgggagc gattcgtcgg taccgataat tctgctggtt catcaggatt tgtttggcca
      661 actacggaaa tagagggcgg taatcgtgcc ttccgtgaca tgcgcatggc catgatgaat
      721 ttggataatg aacgtgcttt agcactttct gattctttag ttgaagtaga tcctaattgg
      781 gcaacggcgc acctaggaca aatgcattac tactggtttg aagcagacaa agataatttc
      841 tttgcggcca aagaagcggc catgtccaaa atagataatg cgtctcgtgc agaagcacat
      901 ttgatcaaat catatgattt agatcgagac actcgccttt ctgaactgcg cagtgccatg
      961 atgtttgctc cagtagatcc tatggttcgc gtatggtacg cctttaacga acaagacaaa
     1021 gaattagcaa gagatgtcgt tcaaatcgct tggaatcgcc taccccagaa cggtgcggtg
     1081 aacaatatga tgggctatat ctatatggat ttggaagata tggaaaaagc gcaattacac
     1141 tttgaacttt ttatgcgggc caatccggat gtaaccaatg cctacgattc atacggtgat
     1201 ttttatgctg aattaggcga taacgaaaag gccaaagaaa tgtatatgat ggcttatgcc
     1261 aaggattcca catggactgc ctcaaaagaa aaagctgaag cactaaaata gtgcgctttt
     1321 gtgattattt ttttcgccaa aacccgcctt tccggcgggt tttttttatt tcgatcgcgg
     1381 aattacatga gtttttaaaa tctgattttt cccttgttga acggctggtg ttttccggta
     1441 ggaccaaatc ttatcgcgcg ctgatttggc gctctgattt aaatcgacaa tgggtttcgg
     1501 gtaatcttta cccagagtaa agccgtacat ggcctgttct aattcggaaa gttgccatgg
     1561 tgcatgcact aaatctcctg gcaaatctct gagttcgggc acccattttt taataaatac
     1621 gccctctggg tcgtgcttga gactgtttgt ttcgggattg tacatgcgta tggtattgac
     1681 tcctgtggtc cccgcttgca tctgaaactg ggaataatgg atgcctgggt cgtaatccaa
     1741 gaataattgt gccagataat acaccccatg tcgccaatct tgatcgagat taaagaccaa
     1801 aaaggacacc aacatggcgc gcattctaaa attaatccac cctgtggctt gcagggcacg
     1861 catgttcgca tcgaccagag gaatcccagt ccggccttgt ttccaagcag ccaaatactc
     1921 cggattgttt tggtgaggca tggattcaaa acctgggttg acgcaatggg tctcgtaatc
     1981 gcattggact tcaaactttt ggataaaatg acaatgccat ctcaggcgcg tgagcatggc
     2041 ttcaaaacta cgcttgtacc gtgatttatt gggatgggta tagatatact gatacacttg
     2101 gcgcacactg aggttgcccc aggcgatata gggcgaaagc cgactgcagc tgaccctact
     2161 ctgctctggc ttagaaatat ggcgcgcgta attcgcgccg cgatcctggg caaaactttt
     2221 taggtacttc catccacggg attgtccagg gggttgcatt tgggcgggat tctcttgaaa
     2281 gattgcagcg ctaagattgt cgtctacttg aacgtccctg ggtgtacccg ggtctttaat
     2341 atcccatgga tataaactct ctaaggccgt tatcctggat aaaatttcag ggttttggcg
     2401 tgaaaatcta ttggttatga tcggctggga catggtggta taccaatctt tgacccaatc
     2461 cttgcgatga ctcaagcccc gttggacgcc gttttgttga aattcactcc attgtacccc
     2521 atgaatttta caccaatgcg ccaccgattt atcgcgctcc caagtgactt ggacgccg
//
LOCUS       DPUP01000192            6524 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15312,
            whole genome shotgun sequence.
ACCESSION   DPUP01000192 DPUP01000000
VERSION     DPUP01000192.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6524)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6524)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6524
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(133..1584)
                     /locus_tag="DHV98_07190"
     CDS             complement(133..1584)
                     /locus_tag="DHV98_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007810107.1"
                     /note="catalyzes the hydrolysis of Xaa-His dipeptides;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HCK06126.1"
                     /translation="MSTAVSSLEPKVIWANFASLNAVPRASKKEQHVINFIKEFGLGL
                     GLETQVDTIGNVLIRKPATPGMSDRKTVVMQAHLDMVHQKNADVDFDFEKQGIDMYVD
                     GDWVRANGTTLGADNGLGVAAIMGVLASNDLPHPAIEALFTIDEETGMTGAMELKEGW
                     LTGAILLNLDTEEDNELGVGCAGGIDVTFKSCYTPVLSDPGVAYRISVRGLQGGHSGM
                     DIHKGLGNANKLMNRILWAVNDKVHLAELSGGSLRNAIPRESFCLVVVAPENEIGFKE
                     AFTQCKNEILAEFTALEPELSLEFTPDESPKQIMPSDEFMQFIRGVQATQNGVYRMSP
                     DIPGLVEASNNLAKVTVKDGLVQWECLTRSSVESTKWDLVHGLQAVGQLSGCSVECSG
                     DYPGWAPNMNSPILKVMRQIYRDTFEHEPHVAACHAGLECGIIGKHYPALDMISFGPN
                     IRGAHAPDERASISSSQKFWRFLCQVLSEIPKQ"
     gene            1662..2729
                     /locus_tag="DHV98_07195"
     CDS             1662..2729
                     /locus_tag="DHV98_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3810 domain-containing protein"
                     /protein_id="HCK06127.1"
                     /translation="MGKNRRIFLVLLLPIQYFGLQFLQPYSTLIEQYYSLGVYPFIST
                     LQRYLFGWIPFSIGDVFYTLIGVMIIRWFWMNSRRLIHDAKGFFLDLVAALGLAYLMF
                     NLIWGLNYLRPPLYKSLELSPKYTTEQLVALTERLIEKSNALHRTLGYADSVKIDLPY
                     TQEEIFEYSRQGYETLGVIYPQFAYRGTSIKPSLWSLGLTYMGYSGYYNPITGEAQVN
                     ERIKNCKFPVVSAHEQAHQMGFAAENEANFIATLATINHENTYIKYSGSIFALRYCLN
                     EVARSDRAAYDRMLPSVNFGILESYREMRAFWESYKNPLESVSKVFWDQFLKANNQSK
                     GIRSYSYMVALLVQYDQQYPL"
     gene            2813..5800
                     /locus_tag="DHV98_07200"
     CDS             2813..5800
                     /locus_tag="DHV98_07200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014031613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06128.1"
                     /translation="MKKYLFFLITMGIFSSLLAQDYFPKNEQLKENYDGLIAFTNAVI
                     HIDADREIDSGTLLIRSGKIISVGSNVKIPDHALVHDLAGKHIYPSFVDAYTNFGVAT
                     PKSQEGGRRSPQYEPTREGFYWNDHIRAEQKAVDHFKYDEKTAQSMREQGFGVVHSLL
                     KDGISRGSGLIVALSDESSDADRLLETNASQCFYFEKSSQSSQSYPGSLMGAMALLRQ
                     MYHDANWYRNNGAQTDQTLEALLANQKKPAFFEAGDNANTLRAHSIGAQFNQPYILVG
                     ASDGYEYLNELAQTKAHFVLPINFPQAYDVTDPYYSAQLSLEDLRRWNQAPLNPKKFA
                     EQNIKFSLSTHDLKSPKSFSEHLSKAIEYGLDPKEALRALTTIPAAQLGVSSMLGSLE
                     AGKLANFLISDTPLFSENSQMQSHWILGKPYNIKLQQHKTSDEYQIAIAGRAARFVVE
                     NKDGNLSLKYGEGDSLETGKITQDGQWLKWQVKDKDQSGVLRAMAQINPDNLELSGQI
                     FFQDGESRSFVASPTAFTPGINPDADKDSPGDSKEMSSEGSGPEVMPITYPNMGFGRT
                     QLPAQQTVLFKNATVWTGEKEGILSNTDVLVKNGKIQAIGTGLSDKGARVIDATGKHL
                     TAGIIDEHTHIAALTINEGGQNSSAEVCISDVVNPKDISIYRNLAGGVTSAQILHGSA
                     NPIGGQSAIIKLKWGASAQDMLYDNAPKFIKFALGENVKQSNWSSFSRYPQTRMGVEQ
                     LYINYFNRARTYLDNKKSGAPYRVDEELEILGEILEGERFISCHSYVQSEINMLMKVA
                     ESFDFRVNTFTHILEGYKVAEKMAQHGVGGSTFSDWWAYKYEVKDAIPFNAAIMARAG
                     VTTAINSDDDEMARRLNQEAAKTVKYGGMDQEEAWAMVTINPAKLLHLDDRTGSIKKG
                     KDADLVLWNEHPLSVYAHAEKTMIDGAFYFDIDEDQALRQSLQKEKNQLIQMMLSDQK
                     SSGSKGRAPGKRDRIKFDCETIN"
     gene            5806..>6524
                     /locus_tag="DHV98_07205"
     CDS             5806..>6524
                     /locus_tag="DHV98_07205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06129.1"
                     /translation="MNIKYKLSVLILSLVTIIGFAQQTPAPAQSETITLVGATVHVGN
                     GSVLENAHLIFKDGKIIALGQSDITPQGQIVNVSGQHIYPGIIAPVSSLGLVEIDAVR
                     QSKDDDELGEYGPNIRSLIAYNAESQVVESMRPNGVLMAQITPQGGVFSGTSSIVQLD
                     AWNWEDAVLKADDGVHLHWPNTYRRGRWWMGEDRGWKPNKDYEKQVETITDYFDRTKA
                     YIAEKPEVPNQAIEALMGTLDG"
BASE COUNT         1899 a         1504 c         1411 g         1710 t
ORIGIN      
        1 ccaatagtcc tcctttcgtg gctccatgcg cgaaagtatc attaaaaaag tcgctgcgtt
       61 gcagcgactt ttttaatatt aagattattt aatctcaaac aggccttaca ttaggatcat
      121 ttcttcgcga gattactgct tcggaatctc cgacaagact tgacacaaga agcgccaaaa
      181 tttttgtgag gacgaaatac tggcgcgctc atctggtgcg tgtgctcctc gaatattagg
      241 accaaaagag atcatgtcta acgccgggta gtgttttccg ataataccac actcaaggcc
      301 cgcatgacac gccgccacgt ggggttcgtg ctcgaatgtg tcgcgataga tttgccgcat
      361 gaccttcagt atagggctat tcatatttgg agcccaaccg ggatagtccc cagaacactc
      421 aacgctacac ccagaaagtt gccccaccgc ttgtaatcca tggactaaat cccacttggt
      481 actttccacc gaagagcgcg ttaaacactc ccattgaacg aggccatctt tgacggtaac
      541 tttggccaaa ttattcgaag cctcaacaag cccagggata tctggactca ttctgtaaac
      601 gccattttga gttgcttgaa caccacggat gaactgcata aattcatcag aaggcattat
      661 ttgttttggc gattcatcag gggtaaactc cagagaaagc tctggctcaa gcgcagtaaa
      721 ttcagctaga atttcatttt tacattgggt aaaagcttct ttaaacccaa tttcattttc
      781 aggagccacg accaccagac aaaaactttc tctgggtatg gcattacgca aacttccacc
      841 actgagttca gccaaatgca ccttgtcatt tacggcccat aaaatgcgat tcatcagctt
      901 attggcatta ccgagtcctt tgtggatgtc catgccgcta tgcccccctt gcaatccgcg
      961 caccgagata cgataagcga cgcccgggtc actaagcact ggtgtgtagc atgatttaaa
     1021 cgtaacatca atacctccgg cgcagccgac gccgagttcg ttgtcttctt cggtgtctaa
     1081 attgagtaaa atcgccccgg taagccagcc ttcttttaac tccatagctc ctgtcattcc
     1141 cgtttcctca tcaatggtaa acagtgcctc gattgcagga tgtgggaggt cgttagaggc
     1201 caaaaccccc attatggcgg caacaccaag accattatcc gctcctagcg ttgtcccgtt
     1261 ggcacggacc cagtctccat cgacatacat atcaatcccc tgcttctcga aatcaaaatc
     1321 aacatcggcg tttttttgat ggaccatatc caaatgggct tgcatgacca cagttttgcg
     1381 gtcgctcatt ccaggggttg ctggcttgcg tatcagtacg ttacctatgg tatcaacttg
     1441 agtttctaaa cccagtccca gaccaaattc ttttataaaa tttatgacgt gctgctcttt
     1501 tttagaggcc cttgggacgg cattgagact ggcgaaattt gcccaaataa ccttgggctc
     1561 aagtgaagat acagcggtac tcataaagtg atttttaaca aatttaatcc ttctatttgg
     1621 gaagtaaaac attactttgg gatttatttg tatgtttgga tatgggtaaa aaccgacgca
     1681 ttttcctggt gctattgttg ccaattcaat actttggact gcagttcctc caaccttatt
     1741 caaccctcat cgagcagtac tacagcttgg gtgtttatcc cttcatcagc actttgcagc
     1801 gctatttatt tggttggatt ccattttcaa taggcgatgt tttttatacc cttatcgggg
     1861 taatgattat tcgctggttc tggatgaatt ccaggagact gatccatgat gccaaaggct
     1921 ttttcttaga tttggttgcg gcactaggac ttgcttacct gatgttcaat ttaatctggg
     1981 ggctcaatta tcttcgtcct ccgctttaca agtccctaga actctctcct aaatacacca
     2041 ccgaacaact ggtcgccttg accgagcgtc tgatcgaaaa aagcaatgca ctccacagaa
     2101 cccttggcta tgccgacagc gtaaaaatag acttaccgta tactcaagaa gaaattttcg
     2161 agtactccag acaaggctat gaaaccctcg gagtgattta tcctcaattt gcttatcggg
     2221 gcacgagcat caaaccttcc ctttggtcct tgggcctaac ttatatgggc tacagtgggt
     2281 attacaaccc cataacagga gaggctcaag tcaatgagcg cattaaaaac tgcaaattcc
     2341 ccgtggtcag tgcacacgag caagcccatc aaatgggatt tgccgctgaa aatgaggcga
     2401 attttatcgc gaccttggcc acaattaatc acgagaatac gtacatcaaa tattcagggt
     2461 caatttttgc cttgcgttac tgcctgaacg aagttgcacg gagcgatcga gcggcttacg
     2521 atcgaatgtt gccgagcgtc aattttggaa tactcgagag ttacagagaa atgcgggcct
     2581 tttgggaatc ctataaaaac cccttagaat cggtatcaaa ggttttttgg gatcaatttt
     2641 taaaagccaa caatcaatcc aaaggcattc gaagttatag ttatatggtg gctcttttgg
     2701 tgcaatacga tcagcaatat cctttataag taccccctct aaaagaattt acttttcaag
     2761 ccaatttcag cagcgacttt gctatattag gtgttctcaa aatttggcat gcatgaaaaa
     2821 gtatttattt ttcctaatca caatgggaat ttttagttcg ttattggctc aagactattt
     2881 tccaaaaaat gagcaactta aagaaaatta cgatggactt atcgcattta ccaacgcggt
     2941 aattcacata gacgccgatc gagaaattga ctcagggacc cttttgatcc gttcaggtaa
     3001 aataatttct gtcgggagca atgttaaaat tccggatcat gccttagttc atgacttggc
     3061 tggaaaacac atttaccctt cctttgtcga tgcgtacact aattttggcg tcgcaacccc
     3121 taaatctcaa gagggaggac gaagatctcc gcaatacgag cccaccagag agggttttta
     3181 ctggaacgat cacattcgtg cagaacaaaa agccgtagat cattttaagt atgatgaaaa
     3241 aacagcccaa agcatgcgag aacaaggttt tggggttgtc catagcttgc tcaaagacgg
     3301 gatctcccgt ggtagcggcc tgatcgtggc cttatccgat gagtcgagcg atgcggatcg
     3361 cttgcttgaa accaacgcaa gtcaatgttt ttactttgaa aaaagcagcc aaagcagcca
     3421 atcctacccc ggatctctca tgggcgctat ggctttatta cgtcaaatgt atcacgacgc
     3481 taattggtac cgaaacaatg gtgcgcaaac cgaccaaacc ttagaggccc ttttagccaa
     3541 tcaaaaaaag cccgcttttt ttgaggctgg cgataacgcc aataccctta gagcccatag
     3601 tatcggtgct caattcaatc agccctatat tttagtaggg gcttctgatg gttatgaata
     3661 ccttaatgaa ctcgctcaaa ccaaggccca ctttgttctt ccaattaatt tcccacaagc
     3721 atacgatgtc actgaccctt attacagcgc acaactctct ttggaagatt taagacgttg
     3781 gaatcaagcg cctttaaatc ctaagaaatt tgcggaacaa aacattaaat tttcactcag
     3841 tactcacgac ttaaaaagtc caaagtcttt ttcagaacat ttatcaaagg cgattgaata
     3901 tgggcttgac cccaaagagg ccttgcgcgc attgaccacg atccctgctg ctcaattagg
     3961 ggtgagttca atgctcgggt ctttggaagc aggtaaactg gccaacttct tgatcagtga
     4021 cacacccttg ttttctgaaa acagtcaaat gcaatcgcat tggattcttg gaaaaccgta
     4081 taacataaaa cttcagcaac acaaaaccag tgatgaatat caaattgcta ttgccggaag
     4141 agcagcacgt tttgttgttg aaaataaaga cggtaattta tctttaaaat acggagaagg
     4201 cgatagttta gaaaccggaa aaataacgca agacggacaa tggttaaagt ggcaagtaaa
     4261 agataaagat caatctgggg tcctaagagc catggcgcaa atcaatccgg acaacctaga
     4321 actcagtggt caaatatttt tccaagatgg tgaatcacgc tcgtttgtgg ccagtccaac
     4381 ggcgtttact ccgggaatta atcccgatgc tgacaaagac agcccggggg attcaaaaga
     4441 gatgagttct gaaggatcgg gccctgaggt tatgcccatc acctatccca atatgggatt
     4501 tggacgtacc cagcttccag cccaacaaac cgtattgttt aaaaatgcca ctgtttggac
     4561 aggagaaaaa gagggcatcc taagcaacac cgatgttttg gttaaaaacg gaaaaattca
     4621 ggccatcggt acggggttat ccgacaaagg cgcccgagtc attgatgcta ccggaaaaca
     4681 tcttaccgca ggaattatcg atgaacacac ccacatcgcc gcactcacca ttaacgaggg
     4741 ggggcaaaac tcatctgcag aagtgtgcat cagtgatgta gtcaatccta aagacatcag
     4801 catatatcgc aatttggccg gtggcgttac ttcggcccaa atcctccacg gttcggccaa
     4861 tccaatcgga ggacaatccg cgattatcaa attaaaatgg ggcgcttcag cccaagacat
     4921 gctttatgac aacgcaccaa aattcataaa attcgcctta ggggaaaatg taaaacaaag
     4981 taactggagt agttttagcc gatatcctca aacccgtatg ggcgtggaac agctctatat
     5041 caattacttt aaccgagccc gtacctatct cgataataag aaaagcggcg ccccctatcg
     5101 cgtcgatgaa gaattagaga ttttgggaga aattctggaa ggagagcgat ttatcagctg
     5161 ccatagttat gtgcaaagtg agatcaatat gctgatgaaa gtggccgagt catttgattt
     5221 tcgagtcaat acattcaccc acatccttga aggttataaa gtggccgaaa aaatggccca
     5281 gcatggcgtt gggggttcta catttagcga ctggtgggcg tacaaatacg aagttaaaga
     5341 tgcgatcccc tttaatgccg caatcatggc ccgtgcagga gtcaccactg cgattaacag
     5401 tgacgacgac gagatggcgc gtcgcttaaa tcaagaggcc gctaaaacag ttaaatacgg
     5461 tggaatggac caagaagaag cctgggctat ggtgaccatt aatcctgcga aattgctcca
     5521 tttagatgac cgcactggaa gtatcaaaaa aggaaaggat gccgatttag tgctctggaa
     5581 tgaacacccg ctttcggttt atgctcatgc agagaaaacc atgattgacg gggcctttta
     5641 ttttgatatt gatgaagacc aagccctgcg ccaatcactt caaaaagaaa aaaatcaact
     5701 cattcaaatg atgctttctg atcaaaagtc ttcaggaagt aaaggacggg ctcctggcaa
     5761 gagagaccgc atcaaatttg actgtgaaac cataaactaa ttgctatgaa tatcaaatat
     5821 aaattaagtg tacttattct ttcgttagtt accatcattg ggtttgctca acaaactccg
     5881 gccccagctc aatcagaaac gatcactctg gtgggggcta cagttcatgt tggcaatggc
     5941 tcggtccttg aaaatgctca tttgattttt aaagacggaa aaataatcgc cctagggcaa
     6001 agtgacatta ccccgcaagg ccaaattgtc aatgtgagtg gtcagcatat ttatcccgga
     6061 ataattgccc cagtctcttc attaggtctg gtggaaattg atgctgttcg gcaaagtaaa
     6121 gacgatgatg aattagggga atacggaccg aatattcgca gccttattgc ctataatgca
     6181 gaaagccaag tggtggaaag catgcgtcct aatggcgtcc ttatggcgca aatcacccct
     6241 caaggcggcg tattttcagg aacctcatcg attgtccaat tggatgcttg gaactgggaa
     6301 gatgcggtcc taaaagcaga tgatggagtc cacctacatt ggcccaacac ctaccgacgc
     6361 ggacgctggt ggatgggtga agatcgcgga tggaaaccca ataaagatta cgaaaaacaa
     6421 gtagaaacga tcaccgatta ttttgatcgc accaaagcct acatcgcaga gaagcctgaa
     6481 gtacccaatc aagctattga ggccctgatg ggaacccttg atgg
//
LOCUS       DPUP01000193            4443 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_29047,
            whole genome shotgun sequence.
ACCESSION   DPUP01000193 DPUP01000000
VERSION     DPUP01000193.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4443)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(14..>312)
                     /gene="eno"
                     /locus_tag="DHV98_07210"
     CDS             complement(14..>312)
                     /gene="eno"
                     /locus_tag="DHV98_07210"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989305.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCK06130.1"
                     /translation="QGIANSILIKVNQIGTLSETIAAVHMAQNAGYTAVMSHRSGETE
                     DNTIADLAVALNTGQIKTGSASRSDRMAKYNQLLRIEEILGESAYYPGTKAFKV"
     assembly_gap    313..511
                     /estimated_length=199
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<512..1493)
                     /locus_tag="DHV98_07215"
     CDS             complement(<512..1493)
                     /locus_tag="DHV98_07215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HCK06131.1"
                     /translation="MSSIIEIHARQIFDSRGNPTVEVDVTTEHGYMGRAAVPSGASTG
                     EHEAVELRDGGSDYMGKAVLNAVAHVNGEISDALLGLSVFDQEGIDQVMIDLDGTKNK
                     SRLGANAILGVSLAVAKAAANELGLPLFRYVGGVSAKTLPLPMMNIINGGSHSDAPIA
                     FQEFMVMPVKAKSFTHAMQMGSEIFHNLKKVLHDRNLSTAVGDEGGFAPTLGGTEDAL
                     NTIAQATKAAGYTLGDEVMIALDCAAAEFYENGVYDYTKFEGEKGQKRSSKEQADYLA
                     ELCEKFPIISIEDGMDENDWEGWKYLSECIGDKVQLVGDDLFVTNVEELQR"
     gene            complement(1554..2663)
                     /locus_tag="DHV98_07220"
     CDS             complement(1554..2663)
                     /locus_tag="DHV98_07220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase small subunit"
                     /protein_id="HCK06132.1"
                     /translation="MKYTKRKDALVLLADGTIFYGKSVGGNEGTAFGEVCFNTGMTGY
                     QEIFTDPSYFGQIMVTANAHIGNYGTHPQEVESDGVKIAGLVCRNFSYPYSRVSADQS
                     LEDFLNKNNLFAISEVDTRALVAYIRDNGAQNAVISTRVDEIDTLKKELAQVPDMKGL
                     ELSSKVSTTEPYTVGNPDASYRVAALDLGIKKNILRHLVKRDCYVKVFPYNTSFEDLK
                     GFNPDGYFLSNGPGDPEPLNDAIETTRHILNDGAPIFGICLGHQILALANGVSTFKMH
                     NGHRGINHPVKNLLTGKGEITSQNHGFAVNREETEAHSELEITHLHLNDHTVAGIRVK
                     NKPAFSVQYHPEASPGPNDANYLFDQYVASLSSKN"
     gene            complement(2754..3233)
                     /locus_tag="DHV98_07225"
     CDS             complement(2754..3233)
                     /locus_tag="DHV98_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HCK06133.1"
                     /translation="MRHGKKNNHLGRKTAHRKAMLANMACSLIEHKRINTTVAKAKAL
                     KQFVEPLVTKSKEDTTHNRRIVFARLRQKDAVTALFRDVAVKVGDRPGGYTRIIKLGN
                     RLGDNADMALIELVDYNETYNVGKATKKKSTRRSRRGAGAASAPAAVASVDAVKEEE"
     gene            complement(3265..>4176)
                     /locus_tag="DHV98_07230"
     CDS             complement(3265..>4176)
                     /locus_tag="DHV98_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCK06134.1"
                     /translation="PLEPGYGLTVGNALRRVLLSSLEGFAITSVRIEGVDHEFSTIPG
                     VVEDVTEMILNLKQVRFKRQIDEIDNETVTVSVSGNDKLTAGDFQKFISGFQVLNPEL
                     VICNMDAKVNLNIELTIEKGRGYVPAEENKKANAPLGTIFTDSIYTPIKNVKYSIENF
                     RVEQKTDYEKLVFEIITDGSIHPKDALTEAAKTLIHHFMLFSDERITLEADEIAQTET
                     YDEESLHMRQLLKTKLIDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFGKKS
                     LTELEELVNIKGLNFGMDLSKYKLDKD"
     assembly_gap    4177..4284
                     /estimated_length=108
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4285..4389)
                     /locus_tag="DHV98_07235"
     CDS             complement(<4285..4389)
                     /locus_tag="DHV98_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HCK06135.1"
                     /translation="MAVFSFQKPDKVIMINSTDFEGKFEFRPLEPGYGL"
BASE COUNT         1142 a          951 c          756 g         1287 t
ORIGIN      
        1 ggcgtcaaac agattatact ttgaacgctt tcgttcccgg ataatacgcc gattcaccca
       61 agatttcttc tattctcaaa agctgattgt atttggccat acgatcactg cgtgacgcag
      121 aacccgtttt aatttgacct gtattcaatg ccacagctaa atcagcgatc gtattgtctt
      181 cagtttctcc acttctatga ctcataaccg ctgtataacc ggcattttgt gccatatgca
      241 ccgcagctat ggtctcgctt aaagtaccaa tttggtttac tttaatcaaa atagaattgg
      301 caatcccttg atnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nctctttgca gctcttcaac attggtcaca
      541 aataaatcat cacctacaag ctgtactttg tctccaatgc actcagaaag atatttccat
      601 ccttcccaat cattctcatc cataccatcc tcaatggaga taattgggaa tttctcacac
      661 agttcagcca aataatctgc ttgttctttt gaagatcttt tttggccttt ttcaccctca
      721 aatttagtgt aatcgtaaac gccattttca taaaactctg ccgcggcaca atctaatgca
      781 atcatgactt cgtcaccaag agtgtatccg gcggctttag tcgcttgcgc gatggtgtta
      841 agcgcatcct cagtacctcc caaagtaggt gcaaatccac cttcatcgcc tacggccgta
      901 cttaaattac ggtcgtgtaa cacttttttc aggttgtgaa aaatttcaga acccatttgc
      961 atagcatggg taaaactctt ggcctttacc ggcataacca taaactcttg gaaagcaatg
     1021 ggcgcatcac tatgagaccc tccattaatg atgttcatca tcggtagagg taatgttttc
     1081 gcacttaccc cgcccacata tctaaataga ggtaggccaa gctcatttgc agccgctttg
     1141 gctacagcaa gcgaaacccc caatatcgca ttggcaccca aacgactttt atttttagtc
     1201 ccgtccaaat caatcattac ttgatctata ccttcttgat caaaaactga aagacccagg
     1261 agagcgtcgc taatttcccc attgacatgg gctacggcat taagcactgc cttacccata
     1321 taatcgcttc caccgtcgcg aagctccacg gcctcgtgtt ctccggtcga agctccggaa
     1381 ggaacggccg cccggcccat gtacccgtgt tccgtggtga catcgacttc aaccgttggg
     1441 tttcctcttg aatcaaaaat ttgacgtgcg tgtatctcta taatgctgct catagttatt
     1501 aattttttcg tttgcgaata tacaaaagta aaggcggtaa attcccgaat ctattagttc
     1561 ttgctgctta gagaagcaac gtattgatca aataaatagt tcgcatcatt tggaccagga
     1621 ctcgcctcgg ggtgatactg taccgaaaaa gcaggtttat tctttacccg tatcccagcc
     1681 acagtatggt catttaaatg taaatgcgtt atttcaagtt cagagtgggc ctctgtctct
     1741 tctcgattta ccgcgaaccc atggttttgt gacgtaatct caccttttcc cgtaagcaaa
     1801 ttctttactg gatgattaat tcctcggtga ccattgtgca ttttaaaggt cgaaacacca
     1861 ttggccaagg ccagtatttg gtgaccaaga catatgccaa agataggggc gccatcgttc
     1921 aagatatgac gcgtggtttc aatagcatcg tttagtggct caggatctcc tgggccatta
     1981 cttaaaaaat atccgtcagg attaaaccct tttaaatcct caaaagaagt attgtacgga
     2041 aagaccttaa cataacaatc tcgtttaaca agatgtctta agatattttt cttaatccct
     2101 aagtcaaggg ctgcgacccg ataactcgcg tctggatttc caacggtgta aggttcggtt
     2161 gtggaaactt tggaagacaa ctcaaggcct ttcatatcgg gcacttgggc gagctccttt
     2221 ttcaaagtat caatttcatc gacacgggtt gaaattaccg cattttgtgc gccattatca
     2281 cgaatgtaag caacaagtgc gcgagtatca acctcgctta tggcaaacaa attgttttta
     2341 tttaaaaaat cttcgagaga ctggtccgct gaaactcgag aatacggata actaaaattg
     2401 cgacatacta aaccggctat ttttacgcca tctgattcta cctcttgagg atgtgtccca
     2461 taattaccaa tatgggcatt ggcggtaacc ataatttgtc cgaaataaga tggatctgta
     2521 aagatttctt gatacccagt catccctgta ttaaaacaaa cctcaccaaa agcagttcct
     2581 tcgtttcctc ctacagattt tccataaaaa atagtcccat cggctaacag gactagtgcg
     2641 tcttttcgtt ttgtatactt cattttgaaa aaaggatttt acaaaaataa ataaaaaaag
     2701 ggactaactt taatggtcag tccctttatt agaatttaat gaatcaatca tttttattct
     2761 tcttctttta cagcatccac agaagcaact gcagcagggg cactagcagc gcctgcacct
     2821 cgtcggcttc gtcgtgttga ctttttctta gtggctttac ctacattata tgtttcgttg
     2881 tagtccacca actcaataag agccatatct gcgttatctc ctaatcgatt tcccaatttg
     2941 atgatgcgcg tatatcctcc tggtcggtcg cccactttca ccgcaacatc acgaaaaagg
     3001 gcagtcactg catctttttg tcttagtcgc gcaaagacga tacgacggtt gtgtgttgtg
     3061 tcttctttgg acttggttac gagcggctct acaaactgct ttaaggcttt ggccttagca
     3121 acggtcgtat taatgcgttt gtgctcaatc agtgaacacg ccatattagc caacatcgct
     3181 tttctatgcg ctgtttttct tcctaaatga ttatttttct taccgtgtct cattatttat
     3241 gctttatcga cgtttcttta gaaactagtc tttatctaat ttatattttg acaaatccat
     3301 gccgaagtta agtcccttga tgttgactaa ctcctcaagt tcggtcaatg atttttttcc
     3361 aaagttgcgg aatttcatca ggtcgttttt gttaaacgaa accaaatcgc caagggtatc
     3421 tacttctgca gcctttagac aatttaaggc ccgtacagag aggtccatat cgattaattt
     3481 agtcttaagc aattgacgca tgtgaagaga ctcttcatca taggtctcag tttgcgcaat
     3541 ttcatcggcc tctaacgtaa tgcgctcatc actaaatagc atgaagtgat gaattagcgt
     3601 tttagccgct tcggtcaaag catcctttgg gtgaatagaa ccgtccgtga taatttcaaa
     3661 aacaagtttt tcataatccg ttttttgctc tacacggaaa ttctcaatgc tgtactttac
     3721 atttttgatt ggcgtgtaga tcgaatctgt gaagatagtt ccaagaggcg catttgcttt
     3781 cttattttct tcggcaggaa cgtacccacg ccctttttca atcgttaatt cgatattcaa
     3841 attaactttg gcgtccatgt tacagataac taactcaggg ttaaggacct gaaatcctga
     3901 aataaacttc tggaaatcac cagcagtcaa tttatcgttg ccagagacag aaaccgttac
     3961 tgtttcgttg tcgatttcat caatttgtct tttgaaacga acttgtttca aattcaaaat
     4021 catttcggta acatcctcaa caactcctgg aatcgtcgag aattcgtgat ccacgccttc
     4081 gatacgcacc gaagtgattg caaatccctc taaagaagag agaagaacac gtcttagggc
     4141 attacctacg gtcaatccat aaccaggttc taaaggnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnncaatcc ataaccaggt tccaaaggac gaaattcaaa
     4321 ttttccttcg aaatctgtag aattaatcat gataacttta tcaggctttt gaaaactaaa
     4381 tactgccata acttgaaggt gtttttaaaa ttatttagaa tacaattcga cgatgaattg
     4441 ctc
//
LOCUS       DPUP01000194            4769 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6801,
            whole genome shotgun sequence.
ACCESSION   DPUP01000194 DPUP01000000
VERSION     DPUP01000194.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4769)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4769)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4769
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..650
                     /locus_tag="DHV98_07240"
     CDS             <1..650
                     /locus_tag="DHV98_07240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013072235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="family 65 glycosyl hydrolase"
                     /protein_id="HCK06136.1"
                     /translation="AIAAEMYYPYHQELNIYLQQDGFLDKDLAPVDQIPKRQRPINQH
                     WSWDRILRSPYIKQADVLQGFYFFEEDFDREALARHFDFYEPLTVHESSLSPCVHSIL
                     AAKLDKMDQAYAFYLRTARLDLDDYNHEVHEGCHITSMAGTWMSIVEGFGGMRVIKGT
                     LSFDPKLPEAWQGFTFKINFRERALKVNVGREKTEITRESGPECTVLLSGTPIKV"
     gene            805..>1212
                     /locus_tag="DHV98_07245"
     CDS             805..>1212
                     /locus_tag="DHV98_07245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008466434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amlyase"
                     /protein_id="HCK06137.1"
                     /translation="MCSFLLSSCKNNSQQGTSNESSAPTPYFNWEGATVYFMLTDRFN
                     NGDPSNDVNFDRTESTAVLRGFEGGDLAGVTQKIESGYFNDLGVNAIWLTPLVEQIHA
                     GTDEGTGFTYGYHGYWAKDWTALDPNFGTPQELK"
     assembly_gap    1213..1298
                     /estimated_length=86
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1299..>1666
                     /locus_tag="DHV98_07250"
     CDS             <1299..>1666
                     /locus_tag="DHV98_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018941958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-amlyase"
                     /protein_id="HCK06138.1"
                     /translation="YWAKDWTTLDPNFGTPQELKTMIETAHQRGIRVLLDAVVNHHGP
                     QTPQDGIWPEDWVRRGPTCTYDSYATTTACNLVENLPDVLTESNQEVDLPPQLVAKWQ
                     EEGRLEQEQAELDAFFERTG"
     assembly_gap    1667..1824
                     /estimated_length=158
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1878..2798
                     /locus_tag="DHV98_07255"
     CDS             1878..2798
                     /locus_tag="DHV98_07255"
                     /inference="COORDINATES: protein motif:HMM:PF00128.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06139.1"
                     /translation="MKWLSDYVSEYGIDGFRVDTAKHTEASVWEEFRVICNASFAQWK
                     QEHPESVLDDTPFYLVGEVYSYDLHHLREHDFGDRKEDFFNNSFDALINFHIKGTRDM
                     SLEVLYSDYSTILNGPMDGFGTLNFMSSHDDGSPFDKERKNPYETARRLLLAPGTAQI
                     YYGDELARPLIVEGTKGDATLRSFMNWSDLENNAQTAKILNYWQRLGQFRARHMALGA
                     GIHQQISQDPYTFSRVLSHEDHSDRVVVAVLSDADIKMAREGLRIDLGGVFAEGAKVR
                     DAFTGQNYTVTDGEVDLTVFEDVILLESGL"
     gene            2908..3882
                     /gene="pfkA"
                     /locus_tag="DHV98_07260"
     CDS             2908..3882
                     /gene="pfkA"
                     /locus_tag="DHV98_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HCK06140.1"
                     /translation="MKKIAVLTSGGDAPGMNAAIRAVVRACAYNQLECVGVFRGLQGL
                     IEGDFKEMGPRSVKNIINRGGTILKSARSKEFRTPEGRAKAYDQLQKAGVDALVVIGG
                     DGTFTGASVFMSEYDIPIVGLPGTIDNDINGTDYTIGYDTALNTVVEAIDKIRDTANS
                     HNRLFLIEVMGRDAGDIALNAGIGAGAEEILIPEQNLGRERLINSLKRSKKSGKSSSI
                     VVVAEGDQSGKNIFELADYVRENLDDYEVKVTVLGHIQRGGSPSCYDRVLASRLGVGA
                     IDALLAGARGVMIGVANNKIVTVPFEEAIKGDNEIDLDLIRVADITSV"
     gene            3897..>4769
                     /gene="gap"
                     /locus_tag="DHV98_07265"
     CDS             3897..>4769
                     /gene="gap"
                     /locus_tag="DHV98_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003435670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCK06141.1"
                     /translation="MTKIGINGFGRIGRIAFRIAAANENVEVVGINDLLDVDHLAYLL
                     KYDSVHGKFNGTVDVVDGHLVVNGKTIRITAERNPEDLKWDEVGADIVMDCTGIFTTL
                     DKASGHLKAGARKVVISAPSADAPMFVMGVNHQDVKATDTIVSNASCTTNCLAPLAKV
                     IDDEFGLVEGLMTTVHAATATQFTVDGPSRKDFRGGRSALNNIIPASTGAAKAVTKVI
                     PSLEGKLTGMAFRVPTADVSVVDLTVRTEKPATYQQIKDAFKKASEGPYAGVISYTED
                     MVVSQDYVSNPHTCN"
BASE COUNT         1236 a          927 c         1165 g         1197 t
ORIGIN      
        1 aagccatagc cgcagagatg tattatcctt atcatcaaga gttaaacatc tatctgcagc
       61 aagatgggtt tttggacaaa gacttggctc ctgtggatca aattccaaag agacaaagac
      121 cgatcaatca gcattggtct tgggaccgta tcttgcgttc accctatatt aaacaagcgg
      181 acgtcctaca gggtttctat ttctttgaag aagattttga ccgggaggcc ttggcgcgtc
      241 attttgactt ttatgagccc cttacggtgc acgagtcttc gctttctccg tgtgtccaca
      301 gcatactggc agcaaagctc gataaaatgg accaggctta tgccttttat ctgcgtaccg
      361 cccgtttgga cttagatgac tataatcacg aggtccatga agggtgtcac attacttcaa
      421 tggccgggac atggatgagt attgttgaag gttttggtgg gatgcgcgtg attaagggca
      481 cccttagttt tgatccgaaa ctgccagagg cttggcaggg attcaccttt aaaattaatt
      541 ttagagaacg tgctttaaaa gtcaatgtgg ggcgtgaaaa gactgaaatc accagagaat
      601 cagggcctga gtgcaccgtt ttgctctctg gaacaccgat aaaagtttaa tctattcttt
      661 tttacgccaa aaaaggaacc ttaaaaatta attatgaacc aaattgctca atttatatta
      721 atgttcaaag cctacggcca aaaggcgctt actgcagccg ggtccgcatt aaaaatgact
      781 tcaaaagtgg gggctgtgct gttaatgtgc tcctttttac tgagctcttg caaaaataac
      841 agtcagcaag ggacttcaaa tgagtcttct gcgccaaccc catattttaa ttgggaaggc
      901 gctacggttt attttatgtt gaccgaccga tttaataatg gcgaccccag caatgatgtg
      961 aattttgatc gcacggagtc caccgcagtg ttgcgcggtt ttgaaggcgg agatttggcc
     1021 ggggtcactc aaaaaattga atcgggttat tttaatgatc taggagtgaa cgccatttgg
     1081 ttgaccccgc tggtcgagca aatccacgca ggaactgacg agggcacggg gttcacctac
     1141 ggctatcacg gctattgggc caaagattgg acggccctgg atcctaattt tggcacgccc
     1201 caggaattaa agnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnct attgggccaa agattggacg
     1321 accctagatc ctaattttgg caccccccag gaattaaaga ccatgataga gaccgcgcac
     1381 cagcgcggca ttcgggtgct gctcgatgcc gtagtgaatc atcatggacc tcagacgcca
     1441 caagacggca tttggccaga ggattgggta cgtcgcggcc ccacatgtac ttatgattct
     1501 tatgccacaa ccactgcttg taatttggtc gaaaaccttc ctgatgtttt aaccgagagc
     1561 aatcaagagg ttgacctgcc cccgcaactc gttgctaaat ggcaagaaga ggggcgactt
     1621 gagcaagaac aagctgaact cgatgcgttc tttgagcgta caggatnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnntcgatg cgttctttga acgcacagga tatcccaggg
     1861 caccgcgctt ttacatcatg aaatggctta gcgattatgt cagtgaatac gggattgatg
     1921 gctttagggt cgatactgcg aaacataccg aagcatcggt ttgggaagaa tttagagtga
     1981 tctgcaatgc gtcatttgct cagtggaaac aagagcatcc agaatcggta ttagatgaca
     2041 cgccttttta tttggtgggt gaggtctatt catacgactt acaccattta cgggagcacg
     2101 atttcgggga ccgcaaagaa gattttttca acaatagttt cgacgcttta attaactttc
     2161 atatcaaagg gacacgggat atgagtcttg aggtgcttta tagcgattat agtactattc
     2221 ttaatgggcc catggatggt ttcggtaccc ttaattttat gagctcccat gacgatggat
     2281 ctccatttga taaagagcgt aagaaccctt acgagaccgc aagaagactt ttgttagcgc
     2341 cgggaacagc acaaatttat tacggagatg agctcgctag acccttaatt gttgagggca
     2401 ctaaaggtga tgctactttg cgttctttta tgaattggag tgatctggaa aacaatgcac
     2461 aaaccgccaa aattttaaat tattggcaac gactagggca gttccgagcg cgtcatatgg
     2521 ccctcggtgc tgggattcat caacagattt cacaggaccc ttatactttt tcaagagtat
     2581 tgagccatga ggatcattca gaccgggtcg tcgtggctgt actcagtgac gcggacatta
     2641 aaatggcgcg agaaggattg cgcatagacc tgggtggggt ctttgctgaa ggggcgaagg
     2701 ttcgggatgc gtttaccggt caaaactata ccgtaaccga cggtgaggtg gacttgactg
     2761 tttttgaaga cgtgattctt ttagagtcag gactttagcc aagatcggtg ggcttgtaat
     2821 taggacttat ccgaaaacgt tattgttgtg atatcggttt gttatgtgga tggaatcatt
     2881 tattttagcg cggcttaacc caaaagcatg aaaaaaatag ctgtactgac cagtgggggc
     2941 gacgctcctg gaatgaatgc cgcaattcgt gcggtggtgc gtgcttgcgc ctataatcag
     3001 ttagaatgtg tcggtgtttt tcgtggctta caaggcctga tcgaggggga tttcaaggaa
     3061 atgggcccac gttcggttaa aaatatcatc aatcgtggag gaaccattct aaaatcagca
     3121 cgatccaaag aatttcgtac cccagaaggg cgtgcaaaag cctacgacca attgcaaaag
     3181 gctggcgtag atgctctggt ggtgatcggt ggagatggaa cgtttactgg agcgagtgtt
     3241 tttatgtcgg aatacgatat cccgattgtg gggcttcccg gaaccataga caatgacatt
     3301 aacggaacag actacaccat aggctacgat acggcgctca acaccgtagt agaggccatc
     3361 gataaaattc gcgatacggc aaattcgcat aaccgtctct ttttgattga agttatgggg
     3421 cgtgatgcag gagatatcgc tttaaatgcc ggaattggtg cgggagctga agagatttta
     3481 atcccagaac aaaacttagg gcgtgagcgg ttaattaact cgctaaaacg cagtaagaaa
     3541 agtggaaaat ccagcagtat tgtcgtggtg gccgaagggg atcaaagcgg taaaaacata
     3601 tttgaacttg cggattatgt tcgtgagaac ttagacgact acgaagttaa agtgaccgta
     3661 ttggggcata tacagcgcgg gggctccccg agttgttatg atcgtgtact ggccagcaga
     3721 cttggggtcg gagccatcga tgctttgctc gctggtgcgc gcggggtcat gatcggcgtg
     3781 gcgaataata aaatagtaac tgtgcccttt gaagaagcta tcaaagggga caatgagata
     3841 gatttagatt taattcgagt agcagacatc acgtctgttt aatttcaaaa ttgactatga
     3901 caaaaattgg tattaacggt ttcggccgaa ttggtagaat cgcttttaga attgcagcgg
     3961 caaatgaaaa tgtagaagta gtagggatta atgacctact cgatgtggat catttggcgt
     4021 atttgctaaa atatgactca gttcatggaa aatttaacgg aacggttgac gtggtagatg
     4081 ggcatcttgt ggttaatggt aaaaccatcc ggatcactgc ggagcgcaat cctgaagatt
     4141 tgaagtggga tgaagttggt gctgatatcg ttatggattg taccgggatt tttaccactt
     4201 tggacaaagc cagcggtcac ttaaaggctg gggcacgcaa agtcgtgatc tctgcacctt
     4261 ctgctgatgc accgatgttt gttatggggg taaatcacca agatgttaaa gctacagata
     4321 ccatagtgtc taacgcctct tgtaccacaa actgtttggc gccactggcc aaagtcatcg
     4381 atgatgaatt tggacttgtc gaaggtttaa tgactacggt gcacgctgct acagcaactc
     4441 agtttaccgt agatggtccc tctagaaaag actttagagg gggacgcagc gccctaaaca
     4501 atattattcc cgcctctacg ggtgcggcca aagccgtaac gaaagtgatt ccatcactgg
     4561 aaggaaaact aaccgggatg gccttccgtg tgcctacagc cgatgtttct gtagtggatc
     4621 ttactgtgcg caccgaaaag ccagccacat atcagcaaat caaagacgcc tttaaaaagg
     4681 cttctgaagg tccttatgct ggggtaatta gctataccga agacatggtg gtttctcagg
     4741 attacgtgag taacccacac acgtgtaac
//
LOCUS       DPUP01000195            4563 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_4610,
            whole genome shotgun sequence.
ACCESSION   DPUP01000195 DPUP01000000
VERSION     DPUP01000195.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4563)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4563)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4563
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            232..3318
                     /locus_tag="DHV98_07270"
     CDS             232..3318
                     /locus_tag="DHV98_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK06142.1"
                     /translation="MNRTIRFFSFATIFLASVFPVMGQTYDSALFDALSYREIGPFRG
                     GRSAAVTGVPGKPNLFYFGATGGGVWKTNDGGRHWENISDGFFGGSVGAITVSKSDPN
                     VLYAGGGEQTVRGNVSSGFGLWKSEDAGKTWAFAGLPKSRHIPRIIVDPNDHDIVYAA
                     VLGDLYKPTTERGVYKSSDGGKQWKKVLFANENAGATDLVIDPNNPRVLYASTWNVRR
                     TPYSLSSGGPGSALWKSTDYGETWTEISTHKGFPEGTLGIIGVTVSQSNSERLWAMVE
                     HKEHGGVYRSEDSGETWKLMNSDRSLRQRAWYYTRIYADTQDPETVYVLNVRYHKSTD
                     GGKTFSSSNAPHGDHHDLWIAPEDPKRMIMGDDGGAQVTYDGGETWSTYHNQPTAQFY
                     RVTTDDAFPYRIYAAQQDNSTIRIRHRTESGSISEEDWEATAGGESAHIAVDPTDNDI
                     VYGGSYDGFLTRYNHQKNTVRSVSVWPDNPMGHGAEDFKYRFQWNFPIFFSPHNPKKL
                     YAASNHLHASTDQGASWQLISPDLTRNDPTKLGSSGGPITQDNTSVEYYCTIFAAAES
                     PLVEGLLYTGSDDGLVHISQDGGKSWTNITPKDWPQWMMVNSIEPSRHEPGTCYVAGT
                     RYKLGDYTPYLYKTSDYGNSWQRITKGIESEHFTRVLREDLTQRGLLYAGTEAGMYVS
                     FDDGAQWQKFQLNLPQVPITDLTLKNNDLIVATQGRSLWMIDDLTVLHQLRNAKGNQN
                     FLFKPKDTYRIGGRSRSGSLTQGTNHPNGVMVYFTLADPEHSEVSLSFLNLNNDTLKR
                     FSNKDKKNKLEVKKGHNLMVWDLKGEGAERLDGMILWWASTEAPKAVPGNYSVVLQVG
                     DQVMRRPFSIVADPNSEADQMGMQRQFDFISSVNSTVDKAHKSIKKIRGINGQLKEFK
                     SRYENTPSVAELVENATELSKQLTEIEETLYQTKNRSGQDPLNFPIKLTNKLAHLNAL
                     VGMDDFPPTQQDIAVKNELTQAIEGELNKLNGLIDKEIKAFNAAFRNMSLDYLFVE"
     gene            3364..3870
                     /locus_tag="DHV98_07275"
     CDS             3364..3870
                     /locus_tag="DHV98_07275"
                     /inference="COORDINATES: protein motif:HMM:PF03653.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06143.1"
                     /translation="MTYYYLKTLHHLFVLVWIFGLIYTASLFVLREKFGVSNNTDNAN
                     LTLKFWRYATWPSMIIGMITGMAMLHLRLFHLADLWMQVKLVGVILLVGFHIKCHLLF
                     IGAVRTNEASKPKSVKSWAQGVAMGATLGVFFLFLMGLKDSFQWVSGTVIATSVTALI
                     GFWLAKKT"
     gene            3881..>4563
                     /locus_tag="DHV98_07280"
     CDS             3881..>4563
                     /locus_tag="DHV98_07280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HCK06144.1"
                     /translation="MSFYKSLRFRIFFAMLFVLVLTFIGLAILTVIQYKEEAEDYHSE
                     RLLRKEQNIKQNLNYVLKNSPYPQETEALQYIFYNKIFEIKDIHNLDVDLYSPEGQLI
                     LSSQNKVSDTSAKKTLSQNLIKELNKNGNEHLVQSFKQGNENYQSSYSYLKSDTFETI
                     AIVHLPYIADDGFMTKELNENLMRMSLLYGVMLLISIGIAYALSQYITRSLQSISQRL
                     TSTQLLGQN"
BASE COUNT         1322 a         1004 c         1030 g         1207 t
ORIGIN      
        1 tggagttcag acgtgtgctc ttcgatctca caaaagcgac cttatttagc ttagcgcaat
       61 gatccattat tgcacttatt gtcagacccc actcaaaggg cgctcagata aaaaattttg
      121 tgggacatta tgcaaaaatt cgcaccacaa taaggctcga aaaaagccaa aaagccgatg
      181 gtggcggcca attttgttta tatttagtct tcaatccaaa aataaaaata aatgaaccgc
      241 acgattcgtt ttttcagttt tgccacaatc tttttggcca gtgtgtttcc cgttatggga
      301 caaacctatg actcagccct ttttgacgcc ttgagttatc gggagattgg cccttttcgc
      361 ggggggcgaa gtgctgccgt taccggcgtt ccgggaaaac ccaatttatt ttatttcggt
      421 gcaaccggtg gaggcgtctg gaaaaccaat gacggcgggc gtcactggga aaacatatcc
      481 gatggatttt ttggggggtc ggtcggggcc ataacggtgt caaaaagcga tcccaatgta
      541 ttgtatgcgg gagggggaga acaaaccgtg cggggtaatg tctcttctgg atttggactc
      601 tggaaaagtg aagatgcagg aaaaacatgg gcgtttgcag gcttgccaaa aagccgccat
      661 attccccgta ttatagtgga tcccaatgat catgacatcg tctacgcggc cgtccttggc
      721 gatttgtata aacccaccac agaacgtggc gtatacaaaa gtagcgacgg ggggaaacaa
      781 tggaaaaaag tgctttttgc caatgaaaat gcgggcgcaa cggacctagt aattgacccc
      841 aataacccac gcgtacttta cgcctccact tggaatgtac ggcgaacccc ttatagtttg
      901 agcagtggtg ggccagggtc ggccttatgg aaaagtacag attacggcga aacttggact
      961 gaaatttcaa cccataaagg atttcctgaa ggaacccttg ggattattgg ggtcacggtt
     1021 tcccagagta atagcgagcg cctttgggct atggtagagc acaaagaaca tggaggtgtt
     1081 tatcgcagcg aagattcagg agaaacatgg aaactcatga acagtgatcg cagtcttcgt
     1141 cagcgggcct ggtattacac acgaatttat gccgacactc aagacccgga aacggtttat
     1201 gtgctcaatg tgcgttatca caagagtacc gatggaggaa aaaccttttc ctcaagcaat
     1261 gcgccccatg gcgatcatca tgatttgtgg attgctcccg aagatcctaa gcgcatgatt
     1321 atgggagatg atggaggcgc acaagtgact tatgatggtg gagagacttg gagtacctat
     1381 cacaatcagc ccacggcaca gttttaccgc gtgaccactg atgatgcttt tccttatcgc
     1441 atctatgcgg cgcagcagga caactctacc attcgcatca gacacagaac agaatcgggg
     1501 agtatttcag aagaagactg ggaggccaca gctggcggtg aaagcgccca tattgcggta
     1561 gacccgaccg ataacgacat cgtttatggc ggaagttatg acgggttttt aacccgctat
     1621 aatcaccaaa aaaataccgt tcgtagtgtg agtgtttggc cagacaaccc tatggggcac
     1681 ggtgccgaag attttaaata tcgctttcaa tggaatttcc ccatattctt ttcaccccat
     1741 aatccgaaaa aactttacgc ggcatcaaac cacctgcatg cctctacaga tcagggcgct
     1801 tcatggcaat tgatcagtcc agatttaacc cgcaacgacc caaccaaact gggctcttcg
     1861 ggtgggccca ttactcagga caatacctcc gtggaatact actgtaccat ttttgctgct
     1921 gcagaatctc ctttggtcga gggattgctt tatacgggca gtgatgatgg tttggtgcat
     1981 atttctcaag acgggggaaa aagctggacc aatattaccc ctaaagattg gccccagtgg
     2041 atgatggtca acagtattga accctcacgt catgaaccag ggacctgtta tgtcgcagga
     2101 accagataca aactcgggga ctacacgcct tatttgtata aaaccagtga ttatggaaat
     2161 tcttggcaaa gaattacaaa gggcattgaa agcgaacatt ttacccgtgt tcttcgtgaa
     2221 gacctaaccc aacgaggact cctttatgcg ggaactgagg ccggtatgta cgtctctttt
     2281 gatgatggtg ctcaatggca gaaatttcag ctcaacctgc ctcaagtccc cattaccgat
     2341 ctaacgctca aaaataacga tcttattgtt gccactcaag ggcgcagtct ttggatgatc
     2401 gatgacctaa cggtattgca tcaactgcgc aacgccaaag gcaatcaaaa ttttcttttc
     2461 aaaccaaaag acacttatcg tatagggggg cgctcgagat ccggctcttt gacccaaggg
     2521 accaatcacc ccaatggcgt gatggtatac ttcaccttag cggatcctga acactctgaa
     2581 gtgagcctaa gctttttgaa tttaaataat gacaccctta agcgctttag caacaaagac
     2641 aaaaagaaca agctcgaagt caaaaaaggc cataatttga tggtttggga tcttaaaggc
     2701 gagggtgcag agcgtttgga tggcatgatt ctttggtggg ccagcactga agctcctaag
     2761 gcggtaccgg gcaattacag tgttgtcctt caagtgggtg atcaagtcat gcgccgaccg
     2821 tttagcatcg tggccgaccc taattcagag gcagatcaaa tgggtatgca acgtcagttt
     2881 gattttatta gctccgtgaa ttcgaccgta gataaggccc ataagagcat taaaaagatt
     2941 cggggcatta acgggcagct caaggaattt aaatcccgtt acgaaaacac gccgtcggtt
     3001 gccgaactcg tcgagaatgc cactgaattg agcaaacaac tcactgaaat tgaagaaacg
     3061 ctttatcaaa ccaagaatcg cagtggccag gaccccctta atttcccaat caagttaacc
     3121 aataaattag cgcatttaaa tgccctggtt ggtatggatg attttccgcc gacccaacaa
     3181 gacatcgccg taaaaaatga actcacgcaa gccattgagg gggaattaaa caaattaaat
     3241 gggctgattg ataaagaaat aaaagcattt aatgcggcct ttcgcaatat gagtttagat
     3301 tatttatttg ttgaataaac cattcgagct cttgcagccc aaccctcatc cataaacagg
     3361 cgtatgacct attactattt aaaaaccttg catcacctct ttgtccttgt atggattttt
     3421 gggctcattt acaccgcgag cctatttgtt ttaagggaga aattcggggt atcgaacaac
     3481 accgataatg ccaatttgac cctcaaattt tggcgttacg cgacatggcc cagtatgatt
     3541 atcggaatga ttaccgggat ggctatgctt catcttagac tttttcactt agcagactta
     3601 tggatgcaag tcaaacttgt cggcgtaata ttattggtgg ggtttcatat aaaatgtcac
     3661 cttcttttta ttggtgccgt aaggacaaat gaggcgtcaa agcccaaaag tgtaaaatct
     3721 tgggctcagg gggtcgccat gggcgcaacc ttaggtgttt tctttttgtt tttaatgggg
     3781 ctaaaggata gttttcaatg ggtttctggc actgttattg caacatcggt aactgcttta
     3841 atcggctttt ggctggccaa aaaaacataa tacccgatct atgtctttct acaaatctct
     3901 gcggtttcgt atattttttg ccatgctttt tgttttggtc ctgaccttca ttggcttggc
     3961 cattctaacg gtaattcagt acaaagaaga agctgaagat taccatagtg aacgtctttt
     4021 acgcaaagaa cagaacatca aacaaaatct taattacgtt ttaaaaaaca gcccttatcc
     4081 ccaagaaact gaagcgcttc aatatatttt ttacaacaag atttttgaaa tcaaagacat
     4141 ccataattta gatgttgacc tttacagccc cgaaggtcaa ttaatcttaa gctctcaaaa
     4201 taaagtttct gacacaagtg caaaaaaaac attgagtcaa aatttaataa aagaattaaa
     4261 caaaaacggt aatgagcatc tcgtccaatc gtttaaacaa ggcaatgaaa attaccagag
     4321 ttcatattct tacttgaagt ccgacacctt tgagaccatt gccatagttc atctgcctta
     4381 tatcgcagac gacggattta tgactaaaga gctcaacgaa aatttaatgc gcatgagctt
     4441 gctctacggg gttatgcttc ttatttctat tggcattgcc tacgccttat cacagtatat
     4501 tacgcgcagt ttgcaaagta tcagccagcg cctgacttcg acccagttat tggggcaaaa
     4561 tca
//
LOCUS       DPUP01000196           10786 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1946,
            whole genome shotgun sequence.
ACCESSION   DPUP01000196 DPUP01000000
VERSION     DPUP01000196.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10786)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10786)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10786
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..591)
                     /locus_tag="DHV98_07285"
     CDS             complement(<1..591)
                     /locus_tag="DHV98_07285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HCK06145.1"
                     /translation="MRLSKQTITLFFKGIAMGAADAVPGVSGGTIAFISGIYPELIKT
                     ISGINLGLLKTLKDHGFKAFWQEANGGFLLTLIAGILVSFVSLMRLAKFLIEQHPIWI
                     WSFFFGLIVASVLYMGRQVRHWNLWRYLSLISGTLLAFYLTQLPSYGGVDQAWFLFFA
                     GALAICAMILPGISGSFILVILGAYKTLSDALHNFDI"
     gene            complement(624..2024)
                     /locus_tag="DHV98_07290"
     CDS             complement(624..2024)
                     /locus_tag="DHV98_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06146.1"
                     /translation="MHLGPEEHNNFSLTRFESMLQTNDVYFFDSEEFEEIIHHYLEQG
                     KMALAKKATRLGLEQHPTSTNLKLFEVEMFIFENQLDHAEKLLDDLYLIEQFNEEIFI
                     QKANILSRRDQHKKAIQLLEQALEITEDPLDVLSLIGMEYLFLEDYENAKGYFMQCVE
                     EDTEDYSALYNVVYCFEFLEQYEQAIDYLNDFLNSQPYCEVAWHQIGKQYYQIKDYKK
                     ALAAFDFAIISDDRFIGAYLEKGKVLEKLKQYEEAIDSYMTTLGLDDPTSFALLRIGR
                     CYERLGNEEMALQFYNKCVTEDALLDKAWIAITDFYLKKKDYKKALYYIDKAVSIDAD
                     NVLYWKRYAKINRKLQNFEEAEHGYRRTIELGNYEIDTWLSRCDILIELGEYEAARKN
                     LLQAIEFYPEHPEIEFRMAGLCFMLHETNKAQFHLVNALHLDSEFVMILEILFPEVYR
                     LKLVQELIQNHQKPSV"
     gene            complement(2130..>3200)
                     /locus_tag="DHV98_07295"
     CDS             complement(2130..>3200)
                     /locus_tag="DHV98_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019388316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HCK06147.1"
                     /translation="LDFVAGVSACSVGHAHPEVVRAVQQQAASYMHVMVYGEYVQTPA
                     VELCRRLAELMPEPLDTTYLVNSGTEAIEAALKLARAWTKRQKILYGKRAYHGNTMGA
                     MSVMDYPERTDPFGPLIPHTRPIAFNDYSALDQIDPETAAVILETIQGGAGFIVPDPD
                     YLKTLKSKCDAVGALLILDEIQPGFGRTGRLFGFEHFGVVPDIVVMGKGMGGGMPIGA
                     LTASKAMMETFATKPKLGHITTFGGHPVIAAAALATLKIISGDGFFSAVLEKEQLLRR
                     ELQHPKIKEVRGKGLMLAIILENPNQANELVLRSAKRGLILFWLLYEDKAVRITPPLT
                     ISNQEIGQGCQIIREVLDSLDA"
     assembly_gap    3201..3339
                     /estimated_length=139
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3340..3475)
                     /locus_tag="DHV98_07300"
     CDS             complement(<3340..3475)
                     /locus_tag="DHV98_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013551485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HCK06148.1"
                     /translation="MDHKENFYKYQAQTTPHPLGLVVDHASGSYIYDHLGTAHLDFVA
                     G"
     gene            complement(3490..>4004)
                     /locus_tag="DHV98_07305"
     CDS             complement(3490..>4004)
                     /locus_tag="DHV98_07305"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="OstA-like protein"
                     /protein_id="HCK06149.1"
                     /translation="INNELDSLKVFDNAFMIQEDIDGFNQVKGAQLIGRFTQNKLDTI
                     DVIKNSQVVYYSRDDKKKLVGINNTVASSMQLYIKEQKISGIRFINKVPGKVYPPSAF
                     PENARILPGFIWRGKERLFFKDDLFGGKTFPALKPIRGIELPQELMLPDHEPFGSPAT
                     NDDTSAEQDK"
     assembly_gap    4005..4121
                     /estimated_length=117
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4122..5129)
                     /locus_tag="DHV98_07310"
     CDS             complement(<4122..5129)
                     /locus_tag="DHV98_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OstA-like protein"
                     /protein_id="HCK06150.1"
                     /translation="MWPGSSYFLYFCFLGFFLGAPLHGWTQNLVSESDSLAEPPKKAN
                     QVQVTSGYFEKKPEFPEAVIYSRDANGPVHIVHDGVDMWCNQALVYFKENFVKAFGDV
                     LVQQGDTIEMRSAYGEYNGNTSLAFAAGAVMLKEPTSSLEADTLYFDRVKQQAYYRSG
                     GTVRDTSSVLTSQVGKLYTENKKYEFSGSVVIENPEYTVHAPRLDFYSESGLAYLYGD
                     SRIESPSSTIYCERGYYNTRSNRGHFVKNSRVDYNQRILFGDSIYFDRALGYASASNN
                     IKLIDSTNKMVVRGHYAEVFKDKDSVYITNRAVAISVQEQDSIYIHADTLRVTGPPKM
                     RV"
     gene            complement(5161..6432)
                     /locus_tag="DHV98_07315"
     CDS             complement(5161..6432)
                     /locus_tag="DHV98_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012024288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HCK06151.1"
                     /translation="MAVDLLLGLQWGDEGKGKIVDVLTKEYDIIARFQGGPNAGHTLE
                     FDGIKHVLHTIPSGIFHPTAVNLVGNGVVIDPVIFKRELDNLAPFGIDIPKKLLISRK
                     AHLILPTHRLLDAASEAAKGKAKIGSTLKGIGPTYMDKTGRNGIRVGDIELPNWKEKY
                     RALANKHEAMIASYKADIQYDLAELEVAFFGAIETLKTLDFIDSEAYLFDAMAQGKSI
                     LAEGAQGSLLDIDFGTYPFVTSSNTTAAGACTGLGIAPNKIKEVFGIFKAYTTRVGSG
                     PFPTELFDEVGATMGRVGNEFGATTGRPRRCGWLDLVALKYAVAINGVTQLMMMKGDV
                     LSGFNKLKVCTAYNYQGKTITHFPYDIDPELVTPVYTELPGWKQDLTGMTQANQLPKE
                     LMAYIEFLEGELGVPIKIVSVGPDRKQTILR"
     gene            complement(6440..6886)
                     /locus_tag="DHV98_07320"
     CDS             complement(6440..6886)
                     /locus_tag="DHV98_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HCK06152.1"
                     /translation="MKTPTDINNQAIVKNVFTTFLEEKGHRKTPERFAILSVVYDQKD
                     HFDIESLYVKMKNKNYRVSRATLYNTIELLLECGLVRRHLFGQNQAHYEKSYFDKQHD
                     HLILDNGEVMEFCDPRIQSIKKTIEEVFDVDITKHSLYFYGRRKGN"
     gene            complement(6910..9146)
                     /locus_tag="DHV98_07325"
                     /pseudo
     CDS             complement(6910..9146)
                     /locus_tag="DHV98_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783009.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RelA/SpoT family protein"
     assembly_gap    7569..7602
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(9294..10145)
                     /locus_tag="DHV98_07330"
     CDS             complement(9294..10145)
                     /locus_tag="DHV98_07330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HCK06153.1"
                     /translation="MEQQPTLLTSTNNGLIKQIVQWQEKSRARKKDGLFVVEGLREIN
                     LAHKAGYQGSMFFYCNEIAHNPAAQTNHIAALDFIKSIGGQGIKTYEVSLGVYKKIAY
                     RSSTEGVIGVFKSKNHELKALQLKSKNPLILVAEAPEKPGNIGALLRTADAAGVDAFL
                     LANPLTDLYNPNIIRSSVGGIFTTTIATGTTQEIIDYLNGHNIAIYSAILQEAIPYTQ
                     ANYTNPTALVVGTEADGLSETWRAASKAKVKIPMNGAIDSMNVSVSAGILIYEALRQR
                     SINAVES"
     gene            complement(10189..>10786)
                     /locus_tag="DHV98_07335"
     CDS             complement(10189..>10786)
                     /locus_tag="DHV98_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015755544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06154.1"
                     /translation="TLDGTKKVYVYADGVREIMDAVSQLKNHGLSKIVLVGGYQSDQI
                     IPFLKRHDIPVLIDRVHSLPQQADDDYDKPFKLPVLLTKGGLTVGLNARGSMERMSTR
                     NLPFYAGHTSGFGLSAEDALKLVTSNTAKILGIDADYGTLEVGKSATLFVSKGDALDM
                     RTNQLSHAFIDGRALSLETHQTELYQRYSEKYGQQTRD"
BASE COUNT         2775 a         2326 c         2250 g         3145 t
ORIGIN      
        1 aatatcaaaa ttgtgtaagg catcgctcaa agttttataa gcccccaaaa taaccagaat
       61 aaaggagccg gagattccgg gtaaaatcat tgcgcagatg gccaatgccc cggcaaaaaa
      121 taaaaaccat gcttgatcta cacccccgta gctcggcaat tgtgttaggt aaaaggctaa
      181 taaagtccct gagatcaaac tcaaatagcg ccaaagattc caatgcctta cctgacgtcc
      241 catgtagagg acactggcga caattaaacc aaagaaaaag gaccaaatcc atatcggatg
      301 ttgctcgata agaaatttag ccagtcgcat cagactgaca aaactgacca aaatccccgc
      361 gataagcgtg agtaggaacc cgccgttggc ttcttgccaa aaggccttaa aaccatggtc
      421 ttttaatgtt tttaaaagcc ccaaattgat gcctgaaata gttttgatga gctcaggata
      481 aataccagaa ataaaggcga ttgttcctcc tgatactcct ggaacggcgt cggcagcgcc
      541 catggcaatg cccttaaaaa agagtgtgat tgtttgcttg gatagccgca tatttcagag
      601 gtttaccctc aaaaataaca caattatacc gaaggttttt gatgattttg gattaattct
      661 tgaacgagtt taaggcgata tacctcagga aataaaatct ctaagatcat cacaaactct
      721 gaatctaagt gcaatgcatt gaccaggtga aattgggcct tattggtttc gtgtagcata
      781 aaacacaaac cggccatgcg aaattctatt tccggatgtt cggggtaaaa ttcaatcgct
      841 tgtaacagat tttttctggc cgcttcatac tcgcctaatt cgataagaat atcacagcgt
      901 gagagccatg tgtcaatttc gtaatttcct agctctattg ttcggcggta accgtgttct
      961 gcttcttcaa agttttgcag ctttctgttt atttttgcgt aacgcttcca gtacaagaca
     1021 ttgtctgcat caatgctcac tgctttatcg atgtagtaca aggctttttt ataatccttt
     1081 tttttgaggt agaagtcagt gatggcaatc caagccttat ctaaaagggc atcttccgtg
     1141 acacatttat tataaaattg tagggccatt tcttcgttcc cgagacgctc atagcaccta
     1201 ccaatgcgca aaagggcaaa ggaggtcggg tcatcaagac caagagtcgt catgtagctg
     1261 tctatggcct cttcgtattg ctttagtttt tcgagcacct tacccttttc aagatatgcc
     1321 ccgataaacc ggtcatcact gatgattgca aaatcaaacg cggctagcgc ttttttgtag
     1381 tctttaattt gataatattg cttgccgatt tgatgccagg ccacctcgca gtaaggttgg
     1441 ctattcaaaa aatcatttaa ataatcgatg gcctgttcgt attgttccaa aaactcaaaa
     1501 caataaacca cattatagag cgcggaatag tcttcagtat cctcttcaac acactgcatg
     1561 aaatacccct tggcgttttc gtagtcctct aaaaataggt attccatccc gattaatgag
     1621 agcacatcta aagggtcttc ggttatttca agggcttgtt ctaaaagttg aattgctttt
     1681 ttatgttgat cacgccggga caggatattt gccttttgaa taaaaatctc ttcgttaaat
     1741 tgttcaatca aatagaggtc atccaataat ttttctgcgt ggtcgagctg gttttcaaaa
     1801 ataaacatct ctacttcgaa taattttaaa ttcgtagaag tcggatgttg ctcaagccct
     1861 aaacgcgtcg ctttctttgc caaggccatt tttccttgtt ctaagtagtg atgaattatt
     1921 tcctcaaact cttcagagtc aaaaaagtag acgtcattgg tctgcagcat ggattcaaaa
     1981 cgcgttagag agaagttgtt atgctcttca gggcctaggt gcataattag cgtttagctg
     2041 tttgttcatt aaatataagt gacccttgag gaattggacc ggattctgcg gtttactttt
     2101 taacaagctt atcaacacgg ggtctggaat taagcatcga ggctgtccaa tacctcacga
     2161 attatctggc atccttgtcc aatttcctgg tttgaaatag tcaatggtgg cgtaatacgc
     2221 acagctttgt cttcgtacaa aagccaaaat agaatcaacc cgcgttttgc ggatcgcaac
     2281 accaattcgt ttgcttggtt tgggttttcg agaataatcg ccagcatgag ccccttgccg
     2341 cggacctctt ttattttggg atgttgtagt tcacgtcgca ataactgttc tttttccaag
     2401 acagcactga agaatccatc accacttata attttgagcg tcgctaaggc cgcagcagca
     2461 attacaggat gacccccaaa agtagtgatg tgccctagtt ttggtttggt cgcaaaagtc
     2521 tccatcatcg ctttggaggc ggtgagtgct ccaatgggca taccgccccc cattcctttt
     2581 cccattacca caatgtctgg aacgacccca aagtgttcaa agccaaaaag gcgtccagtg
     2641 cgcccaaatc cgggttgaat ttcatccaaa attaggagtg cgccgacggc gtcgcatttt
     2701 gactttaggg ttttcaagta atccgggtct ggaacaataa aaccggcccc cccttgaatg
     2761 gtttctaaaa taacggccgc cgtttcgggg tcaatttgat cgagagctga gtaatcatta
     2821 aaggcaatag ggcgcgtatg gggaatcaaa gggccaaagg ggtctgtgcg ttccgggtaa
     2881 tccatgacac tcattgcgcc catggtattg ccgtgatagg ctcttttacc gtatagaatt
     2941 ttctgtcttt tggtccatgc ccgggctaat ttcagtgccg cttcaatcgc ctctgtcccg
     3001 ctattcacca aataggtggt atccaagggt tccggcatta attcagccag tctacggcat
     3061 agctcgactg ctggggtttg tacatattcc ccgtacacca tcacgtgcat ataggacgca
     3121 gcctgttgtt gaacggcacg aactacttca ggatgagcat gaccaacact acacgcggaa
     3181 acccctgcaa caaaatcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnng ccctgcaaca aaatcgagat
     3361 gcgctgttcc taggtggtca taaatatacg agccactggc atgatccacc accaaaccga
     3421 gcgggtgagg agtggtctgg gcctgatatt tataaaaatt ctctttatga tccatgggac
     3481 tcagggcgat tacttgtctt gttctgcaga ggtatcgtca ttcgtcgcag gactgccaaa
     3541 cggctcatga tccggcaaca ttaattcttg gggcaactca atgccacgaa taggttttaa
     3601 ggcaggaaat gtcttgccgc caaacaaatc gtctttgaaa aataagcgtt cctttccgcg
     3661 ccaaataaat cccggaagaa tacgcgcatt ctcaggaaac gcggaaggcg gataaacctt
     3721 acctggaact ttattgataa atcggatgcc gctgattttc tgctctttaa tgtagagctg
     3781 catagaagag gccacagtat tgttgatgcc cactaatttc tttttgtcgt cccggctgta
     3841 atacacgacc tggctatttt taatgacatc tatggtgtct aatttgtttt gagtaaagcg
     3901 tcctatgagc tgtgcgcctt tgacctgatt aaacccgtca atatcttctt gaatcatgaa
     3961 tgcattatca aataccttga gtgaatccag ctcattattg atttnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngacccgcat ttttggtggg
     4141 cctgtcacgc gcaaggtgtc cgcatgtatg taaatagaat cttgttcttg aacactaatc
     4201 gctacagcac gattggtaat atagaccgag tctttgtctt tgaaaacttc tgcgtaatga
     4261 ccgcgcacca ccattttatt ggtagaatcg atcagtttga tgttattgga tgccgaagca
     4321 tagccaagcg cacggtcaaa gtaaatactg tccccaaaga gtattctctg gttgtaatcc
     4381 acgcgcgagt ttttaacaaa atgaccgcga ttacttcgtg tattataata acctcgttcg
     4441 caataaatcg tactgctcgg gctttcaatt cgggaatcac cgtataaata agcgagtcct
     4501 gattccgaat agaagtcaag tcgcggagcg tgaaccgtat attcaggatt ttcaataacc
     4561 actgaacccg aaaattcata ctttttattc tcggtataga gtttccctac ttgactcgtg
     4621 agtacactgc tggtatcgcg aacggtacca ccgcttctgt aataggcctg ttgttttacg
     4681 cggtcaaaat aaagggtgtc tgcttcaaga ctcgaggtgg gctctttaag cataaccgct
     4741 ccggcagcaa aagccaatga agtattgcca ttatactccc cataagcact gcgcatctca
     4801 atggtatcgc cttgttgcac caagacatca ccgaatgctt tgacaaaatt ttctttgaaa
     4861 tagaccaatg cttgattaca ccacatatcg acgccgtcat ggacaatatg cacgggtccg
     4921 ttggcatcac gcgagtagat tacggcttcc ggaaactcag gttttttttc aaaataccca
     4981 gaagttacct ggacttgatt tgcttttttt ggtggttcgg ctaaagaatc tgattcagaa
     5041 actaaatttt gtgtccaccc atgcagggga gcgcccagaa aaaatcctag gaaacagaaa
     5101 tacaaaaaat aagagctacc gggccacatc aggtgacgaa aatagggact aatttgcaga
     5161 ttaccgcaaa atcgtttgct ttcggtcagg accgacggaa actattttaa tcggcacgcc
     5221 taattcccct tccaaaaatt cgatataagc catgagttct tttggtaatt gattggcttg
     5281 ggtcatgcct gtgaggtctt gtttccaacc agggagttcc gtgtaaacag gcgtgacgag
     5341 ttctggatca atatcgtaag gaaaatgcgt aatggttttg ccttgataat tataagcagt
     5401 acacactttt agtttgttaa acccgctcaa gacatcccct ttcatcatca tgagctgggt
     5461 gaccccgttt atggccactg catattttag cgctactaag tcgagccatc cacagcgacg
     5521 gggtctgcct gtcgtggcgc caaattcatt gccaacgcgg cccatggttg cgcccacctc
     5581 atcaaaaagc tcagttggga aggggccgct ccccactcgg gtggtgtagg ccttaaatat
     5641 gccaaaaact tctttgattt tattcggagc gatacccagt cctgtacagg ctccagctgc
     5701 agtggtattg gatgaagtca caaaggggta ggttccaaag tcaatgtcga gcaatgagcc
     5761 ttgagctcct tccgcgagaa tgctttttcc ctgagccatg gcgtcaaata gatacgcttc
     5821 gctatcaata aaatctaggg tttttagcgt ttcaatagcc ccgaaaaagg ccacttctaa
     5881 ttccgctagg tcgtattgaa tgtcagcttt gtaggaagcg atcatcgcct cgtgtttgtt
     5941 ggccaatgcg cggtattttt ctttccagtt gggcagttcg atatccccta cgcgaatgcc
     6001 gttacgcccc gttttatcca tataggttgg gccaatgcct tttagggtag aaccaatttt
     6061 ggctttgcct ttggcggctt cactcgccgc atcgagcagt ctgtgggtcg gtagaattaa
     6121 atgggctttt cgagaaatta aaagtttttt ggggatatca atgccaaaag gggcaaggtt
     6181 atccaattcg cgtttgaaaa ttaccggatc gatgaccaca ccattgccga ccaaattgac
     6241 cgcagtagga tgaaatatac cactgggaat cgtatgtaac acgtgcttaa tcccatcaaa
     6301 ctccagcgtg tgtccggcat ttgggccgcc ttgaaaacgc gcaatgatat cgtactcttt
     6361 ggtcagtaca tcaacgattt tcccttttcc ttcatcgccc cattggaggc ctaataacaa
     6421 atctactgcc ataatatgat cagttgcctt tacggcgacc gtaaaaataa agtgagtgtt
     6481 tggttatgtc cacatcgaag acttcttcaa tggttttctt aatactttgg attctgggat
     6541 cacaaaactc catgacttct ccattgtcca aaataagatg gtcgtgttgc ttgtcaaaat
     6601 atgacttttc gtaatgcgct tgattttgcc caaaaagatg cctgcgcact aatccgcatt
     6661 ctaataataa ttcaattgtg ttgtagagtg ttgcacgact aacgcggtaa tttttatttt
     6721 tcattttaac gtaaagtgat tctatgtcaa aatgatcttt ttggtcgtaa actacagaca
     6781 ggatcgcaaa gcgctcagga gtttttcggt gtcctttttc ctccaaaaat gttgtgaata
     6841 catttttgac gatggcttgg ttattgatgt ctgtgggtgt cttcatcaca aagcctcaaa
     6901 tttagtcatt tataccctgc tgactttatc gatcccatta atttttttga tgtttttcac
     6961 caagttatca aggatagact tgttttttac tttgaccaca atggttccag taaaggtgcc
     7021 gtcattggta tcaaaatgga cacttttcat gtcgatgtgg aggttgtttg aaacgacctt
     7081 agtcacacta ttgaccatac caaaagtatc aataccgcta attttaagtg tcgcttgaaa
     7141 ctctctttgg gtggagtcaa tccactgagc ttttaaaatg cgataattgt agttactctg
     7201 catttgaatg gcgttcggac aggtggtttt gtgtacctta attccatcat tgatggttaa
     7261 aaagccaaat acatcatctc ctggaatggg attacagcag ggggacattt tgtaatcgag
     7321 tttttcttcg tccttgccaa aaaccagctg atcgtatttt accgtaagct cgtctttatt
     7381 gacgtcttca ttattctgag ggcgacgtat tctattttta aaaaagttaa caaacgcatt
     7441 gcttcttgaa gccgcaaaac tcttgagcat ggtattgtca atgatcccgg cacccacgcg
     7501 atagaacaaa tccaggctgg tttttaattt aaaataacga acgagttcat taaccgtctt
     7561 ttcattaann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngtgatttt ttgagccctt
     7621 aatttgcgtt gcaagacaat tttaccttcc gctgcaatct gtttttgctc ttctttgagc
     7681 gaagatttta ttttactaat ggctctcccc gtgattgcgt aatttaacca gtttgctgta
     7741 ggcttggtct tgtccgaagt aatgatttcg acttggtctc cactgctgag ttcaaaactc
     7801 aaagggacca gtttaccatt tactttagcc cctctggtgc tcagtcccac ttgggtatgt
     7861 acgtgaaaag cgaaatcaag ggccgtggcg cctttggcca aagaatacaa atctccttta
     7921 ggagagaaca caaaaatttc tttggcatag agactcaatt taaattcttc gacaaaatca
     7981 acagcgttga tctcagagtt ttccaaagtt tcttgaagtt tattgagcca ctgatcgagt
     8041 ccgtcatctt cgctcagttc atttttgtac ttgtaatgcg cggcatagcc tttttcggcg
     8101 atttcattca tgcgctgact tctgatttgc acttcaaccc aacggccttt agggcccatt
     8161 actgtgatgt gaagcgcttc gtatcctgca gatttagggg ctgaaatcca gtcgcgcaat
     8221 cgggttggat tgggtcgaaa gtgatccgtc acgatagagt atattttcca ggctaaaaat
     8281 ttctcgtcct ctgccttgcc ctcataaata attcggatgg caaatttgtc ataaacctca
     8341 tcaaaggaaa cattttgacg catcatttta cgtcggatag agaacacgga ttttggtctg
     8401 cctttgattt cgtattggat gccctcagta tccaatgttt tttggatgac cccgctaaat
     8461 gccgcgatat aggcatcttg atcttctttg ctttctttaa ttttatcgat aatatctcga
     8521 taaacttcag gttccgtata ctttaatcct agatcttcta actcagattt gatattatag
     8581 agcccgattc tatgggccaa tggcccatag atatagagtg tttcagaagc gattttaagc
     8641 tgtttatccg gagccatact gtccatggtt tgcatattgt gcaagcgatc ggcaatttta
     8701 atgatgatca cacggacatc ctcattaagg gtcaataaca tttttctaaa attctccgcc
     8761 tgaagggaaa catctttttg aaattccaag tgggagattt tcgtgaggcc attaacaatg
     8821 cgggcaatag tttccccaaa gatttgctcg atatcagcca gggtgtatgg ggtgtcctcg
     8881 accacatcat ggagtagggc ggcagcaatt gaggtcgcat ctaatcctat ttctgaggcg
     8941 acaattttgg ccaccgcaat agggtgaaaa atataggcct caccactttt acgcctctgt
     9001 tctttgtgcg catcgacggc ggtgtcaaaa gctgttctga tcagtttttt atccgcccga
     9061 gaaagggtct gataactgat tttgagcagt tctttgtact gcttggcgat ttctttattt
     9121 tcctgcttaa gtactgctgg tgccataaca taaaattaca acaaagtttg ggagtggaca
     9181 agcatatcga cccgcgtgcg cgattcaatt attaagcagg ggtaacgcgt ttaatccaac
     9241 gggtattgca gagaaattat cggtttgtgt cctctaaaaa aaagatcgat cacttatgat
     9301 tcgaccgcat taattgagcg ttgccgcaag gcctcataga ttaaaatccc tgctgaaacg
     9361 gaaacattca tgctatcgat agccccattc atgggaattt tcactttggc tttactggct
     9421 gcgcgccagg tttcggagag tccgtcggct tcagtgccca ccaccagcgc tgtaggattg
     9481 gtgtaattcg cttgagtgta gggaatggcc tcttgtaaaa ttgcgctgta aatagcgata
     9541 ttatggccat tgagataatc gattatttct tgggttgttc ccgtggcaat cgttgtcgta
     9601 aaaatccccc cgacgctact gcgtatgatg ttggggttgt acagatcggt aagtgggttg
     9661 gcaaggagaa aagcgtccac gccagcggcg tcagcggttc gcaaaagcgc accaatattc
     9721 cctggcttct ctggagcttc agccactaaa atcagcggat ttttactctt gagttggagc
     9781 gcctttagtt catgattttt acttttaaac accccgatca ccccttctgt agaactgcga
     9841 taggcaattt ttttataaac gcccaggctc acctcatagg tctttatgcc ttgtccaccg
     9901 atcgatttaa taaaatccaa agcggcaata tgattcgttt gggcagcagg gttatgcgca
     9961 atttcattgc aataaaaaaa catagacccc tgatagcccg ccttgtgtgc gagattaatt
    10021 tctcgcagtc cttcgaccac aaataaaccg tctttttttc tagcacgaga tttctcctgc
    10081 cattgaacga tttgcttgat cagtccatta ttggtactgg tcaataaagt tggttgttgt
    10141 tccatgaact tcgttcgatt gaaccgcgac gcctttagcg agccttaatt aatctctggt
    10201 ttgttgtccg tatttttctg aataacgctg ataaagttct gtttgatgcg tttccagaga
    10261 aagtgcacgc ccgtcgataa acgcatgact taattgattg gtgcgcatgt ctaaagcatc
    10321 tcctttgctg acaaacagtg tggcgctttt tcccacctca agggtcccgt agtctgcatc
    10381 gattcccaga attttggctg tattagacgt aaccagtttt agtgcgtctt cggcggataa
    10441 gccaaatcct gaggtatgac cagcataaaa gggcaagttt cgtgtgctca tgcgctccat
    10501 gcttccgcgc gcattgaggc ccacggtaag cccgcctttg gtgagcaata caggaagttt
    10561 aaagggcttg tcgtaatcgt catctgcttg ttggggcaat gagtgtacgc gatcgatcaa
    10621 cacaggaatg tcatgacgct ttaaaaaggg gataatttga tcggattgat agcccccgac
    10681 taaaacaatt tttgataggc catgattttt aagctgactt acggcatcca tgatttctcg
    10741 aacgccatcg gcataaacat aaactttttt agtcccatca agggtt
//
LOCUS       DPUP01000197           10922 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5263,
            whole genome shotgun sequence.
ACCESSION   DPUP01000197 DPUP01000000
VERSION     DPUP01000197.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 10922)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 10922)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10922
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..301)
                     /locus_tag="DHV98_07340"
     CDS             complement(<1..301)
                     /locus_tag="DHV98_07340"
                     /inference="COORDINATES: protein motif:HMM:PF13620.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06155.1"
                     /translation="MKQFLLLLMLLGGFTAFAQGTVTGVVTDPELGGPLPGANVVETG
                     TSNGAVTDFNGNFSLQVSGNSGSIDISFLGFVDQTVSFTLTNGSADLGTVTMTADA"
     gene            complement(473..1699)
                     /locus_tag="DHV98_07345"
     CDS             complement(473..1699)
                     /locus_tag="DHV98_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HCK06156.1"
                     /translation="MDKLFIALLLSLIGLLVSCGEEKDSATVVLEPDPIMEEYGMILN
                     DFEVVRDTVMSGDTFGGILSNHGVSQAKIYEVATTFREVFDVRKIGVGRPYVLLKSKD
                     SLNQTQVFVYEKNRIEYAVIDFRDSLKVYHEKKPIRLVEKTASGVITSSLSETLSSQE
                     LSPYLAEAMSDIYAWTINFFQLQKGDYFKIVYDERIISDSIPGGVAQIKAAYFSHKGE
                     PFYAFRFMPENEPGAVPDFYDEESNNLRRAFLKAPVKFSRISSRYNLKRRIAHYGYKV
                     RPHKGTDFAAPVGTPIIATADGTVTKAERRGGNGIYVKIRHNATYETQYLHMKKYKVK
                     KGQRVRQGEVIGWVGMTGNTGGPHVCYRFWKNGRQVDPFKTDLPKAEPMPGKFKTEFT
                     ELMLPLKDKLDCIARP"
     gene            complement(1704..2639)
                     /locus_tag="DHV98_07350"
     CDS             complement(1704..2639)
                     /locus_tag="DHV98_07350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HCK06157.1"
                     /translation="MANDLNKREELLGDLQEKYDAIGQDLNTHLSGLLQQEPLTYWDY
                     IQVDALLGLQTKRTVFPDEMVFIMYHQINELIFKMILWEIEQVAHHKSLTTAFFTERL
                     LRISRYFDMLTTSFDIMTQGMEVEQYMKFRNSLAPASGFQSAQYRKIEFASTELINLI
                     DARFRETIDRNTPYEHALDHLYWQAAGKDYETGKKTYLLSAFEKRYRDEFVAFTQEYN
                     TINLAARFKSLPAEDQKNPELIKAMRHYDYTVNITWVMAHYRTANKYLNSGQNQAAAT
                     GGSAWAKYMHPKYQKRLFFPELWSDQERQNWGHEC"
     gene            complement(2642..3394)
                     /locus_tag="DHV98_07355"
     CDS             complement(2642..3394)
                     /locus_tag="DHV98_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3108 domain-containing protein"
                     /protein_id="HCK06158.1"
                     /translation="MLLLNSLLMAQEPQSAYTDGEWCKFRVHYGFVTAGYASIKVQAS
                     TLDAKPVYHIQGEGHTSGISKWFFYVEDYYQSYIDRSTQMPLRFIRKINEGGYTKDVQ
                     IDFNREALTARIWNKENNVKVTADITPLTQDLVSAFYYLRNSIDIDKINVGETVDLDM
                     FFDKEGYKFRMKFLGREDLKTRFGQVKTLKFRPYVEGGRVFKEKESVTVWVSDDQNKI
                     PLLIKADLAVGSLKASLHEFKGLKYPFKILEL"
     assembly_gap    3446..3536
                     /estimated_length=91
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3540..4703)
                     /gene="hppD"
                     /locus_tag="DHV98_07360"
     CDS             complement(3540..4703)
                     /gene="hppD"
                     /locus_tag="DHV98_07360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015361530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HCK06159.1"
                     /translation="MMAEIKNLEHLQNTEYSLKKIFDEAEDFLPLLGTDYVELYVGNA
                     KQSAHFYKTAFGFQSEAYAGLETGAKDKVSYVLKQDKIRLVLTTPLNPDGPINAHINK
                     HGDGVKVVALWVDDATKSWEETTKRGARSFMEPTVEEDDQGHVVRSGIYTYGETVHIF
                     VERKNYKGVFLPGYKPWTSHYNPEPVGLKFIDHMVGNVDWDEMNTWCEFYGKVMGFAQ
                     IISFDDKDISTDYTALMSKVMSNGNGRIKFPINEPAEGKKKSQIEEYLDYYNGPGVQH
                     IAVATDDIVSTVSAMRARGVEFLYVPETYYEDLLDRVGKIDEDVSVLKQHGILIDRDE
                     EGYLLQLFTKPVVDRPTLFFEIIQRKGAQSFGKGNFKALFEAIEREQEARGTL"
     gene            complement(4722..5879)
                     /locus_tag="DHV98_07365"
     CDS             complement(4722..5879)
                     /locus_tag="DHV98_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019385946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HCK06160.1"
                     /translation="MPFYHQLGKIPPKRHTQFRKPDGSLYAEQLFGTIGFDGMYSNIY
                     HEHRPTQVKEILSQKSVAPKIAQANNIQSYRLKGFDVAPCDDYLESRTPVLTNSDCTI
                     ILAAPRKSVTDYFYKNTDADELIFVHKGSGTLKTFLGNIPFGYGDYLLVPRGVIYQME
                     FDGSENRLFIVESNHPIYTPKRYRNWFGQLLEHSPFCERDMRKPQALETHNEQGDFLM
                     KIKKQNDLIDMVYATHPFDVVGYDGYNYPYAFSIHDFEPITGRIHQPPPVHQTFETAA
                     FVVCSFVPRLYDYHPLSIPAPYNHSNIDSDEVIYYVDGDFMSRNDIAPGHISLHPAGI
                     PHGPHPGATERSIGKTQTEELAVMVDTFKPLMVTEQGLAISDGNYYQSWLD"
     gene            complement(6097..>6774)
                     /locus_tag="DHV98_07370"
     CDS             complement(6097..>6774)
                     /locus_tag="DHV98_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HCK06161.1"
                     /translation="IMAQMQKDLRLPVLPEHIECFDNSNLQGTNPVAACVVFKRGKPA
                     KKEYRKFNIKTVTGPDDFASMEEVVYRRYKRLMEENQPLPNLIIIDGGKGQLSSALKS
                     LELLGLRGKISIIGIAKRLEELFYPDDPIPLYLDKTSETLKVIQQLRNEAHRFGITFH
                     RQKRSKEAIDSALDNIPGVGQKTVETLLSTFKSPARLKKASFDEISALVGAYRAQKIV
                     DYFQNFE"
     assembly_gap    6775..6902
                     /estimated_length=128
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6903..7995)
                     /gene="uvrC"
                     /locus_tag="DHV98_07375"
     CDS             complement(<6903..7995)
                     /gene="uvrC"
                     /locus_tag="DHV98_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012022815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HCK06162.1"
                     /translation="MAEVSMTLQIATLPDAPGVYQFYDKQEKLLYIGKAKNLQKRVRS
                     YFNKQHDNARTRIMVKKIHKIRHIVVDTETDALLLENNLIKKYQPRYNVLLKDDKSYP
                     WICVKNEPFPRVFMTRRLIKDGSQYYGPYTQMRTVQTLLELIRGLYPLRTCNYDLSED
                     KIESGKYKVCLEYHIGNCLGACEGHQEFEDYQQQIEAINQILKGNFKASLLQFKAKMN
                     QHAANLEFEAAAAIKEKIDILENYQARSTVVSPKIVDTEVYSIRSDEDFAYVNFLQVA
                     FGSIVRSHTIELKKKLDESDKSLLELAFIELRQRFNLQAKNVIAAHKINTPEGVEVTV
                     PKQGDKMKLLELSLRNAKYFRLDRLKQAKI"
     gene            8070..8942
                     /locus_tag="DHV98_07380"
     CDS             8070..8942
                     /locus_tag="DHV98_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HCK06163.1"
                     /translation="MNIAILSRSAQLYSTKSLLDCGLKHHNMEVMDPNLCHVGTKDNK
                     AVLYYGTEIVDDLDAVIPRIGASNTFFGASLVRQFESMNVFSTVSAEAILQSRNKWTC
                     QQILSQHSIPTPTTFLGHPPNPEDILFHFGGRPVVIKLLQGTHGQGVILAESTASARS
                     IMETLNTSKVRFLVQEYIAESKGSDLRAIVVDGAVVASMKRSSKAGEFRSNLHRGGQS
                     VPYTLSPEETHIAIQAAKALNLGVCGIDILQSERGPLILEINSTPGLEGIETTTGVDI
                     AQKIISYIERNRNS"
     gene            8939..9925
                     /locus_tag="DHV98_07385"
     CDS             8939..9925
                     /locus_tag="DHV98_07385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HCK06164.1"
                     /translation="MSKTSSSIHLLGLEIAPGQSAQARLQVAHLHNRTPIEVPVFIEH
                     AIKPGPTLLFLAGIHGDEVNGIEILRQCIAKGITKPRKGTTICIPVVNVIGYVHNQRD
                     LPDGRDLNRAFPGKKTGSLAAQIAHQLTQWVLPHTDLVVDFHTGGAQRFNAPQIRLSQ
                     DDPELLKKANVFGAPFIIHSKPTPKSLRHTCDKKGIPLLLFEGGKSNDITPSVSNTGV
                     NGIKRLMYELKMLSPKFTVSKPKYKSIEIVNSSWIRAGSSGMFKPLIEVGRWTEKGAN
                     IGQLSDPYGQSSISVLAPNAGYIFNVNQAPTVYQGDALFHISTDIRNGQNEG"
     gene            9915..10481
                     /locus_tag="DHV98_07390"
     CDS             9915..10481
                     /locus_tag="DHV98_07390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002988915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HCK06165.1"
                     /translation="MRDKKTIRAQVMARRKALTAGQQEEMSLAIANQLLRCDIWQGTY
                     YHLFLTIAKNGEVDTHPILDILFGRDKNIVLSKANFENASLSHYLLTEQTRLVTSSYG
                     IPEPENGQEIAPDLLDVVFVPLLAYDKNGMRLGYGKGFYDRFLALCSKNCLKIGLSFF
                     EPEPDLIPSESWDLALDLVITPGAVHRF"
BASE COUNT         3007 a         2463 c         2172 g         3061 t
ORIGIN      
        1 ttgcatcagc agtcatggtt accgttccta agtcggctga accgtttgtc aaagtaaagc
       61 ttacagtttg atcaacgaat cccaagaaag agatatcgat tgaacctgaa ttcccgctta
      121 cttgcaaaga aaagtttccg ttgaaatcag taactgcacc gttgcttgtg cctgtttcaa
      181 caacattcgc tcctggaagt ggccctccta attctggatc ggtaacaaca cccgttacag
      241 taccctgagc aaaggcagta aaaccaccta gaagcatcaa caaaagtaaa aattgtttca
      301 taattgtttt tttaattaaa taattagtga cgcaaaatta gcgtttttcg cagagatagc
      361 cgattgttta gatgaacaaa atgctaaggc tacgatacct ctaagttaag ataactttaa
      421 cggtttttgt acgatggcgt ttgaattagc taacatattt attaacaaca cattatggcc
      481 gtgcaataca atccaatttg tctttaagcg gcagcatcag ctcggtaaat tcagtcttaa
      541 atttgccggg cattggctca gccttgggca aatcagtttt gaacggatcg acttgacgtc
      601 catttttcca aaaacgatag caaacgtgtg gaccaccggt gtttccggtc attccaaccc
      661 aaccaatgac ctcgccttgt cgcacgcgct gccccttttt aaccttgtat tttttcatgt
      721 gcaggtattg ggtctcataa gtcgcgttat gacgtatttt cacataaata ccattgcctc
      781 ctcggcgctc ggctttggtt actgtaccat ctgcagtcgc gatgatcggg gtacccaccg
      841 gggccgcaaa atcagtccct ttgtgcgggc gaaccttata tccgtagtgc gcaatacggc
      901 gtttcaaatt gtaccgagaa gaaatacgac tgaacttgac cggggctttt aaaaaggcgc
      961 gtcgcaaatt attggactcc tcgtcataaa aatctggcac tgccccaggt tcattttcgg
     1021 gcataaatcg aaaggcataa aaaggctccc ctttatgtga aaaataggcc gctttaattt
     1081 gtgcgacacc ccctggaatt gaatccgaaa tgatccgctc atcgtaaacg attttaaaat
     1141 aatccccctt ttgtaactga aaaaagttga tcgtccaggc gtaaatatcg gacatggcct
     1201 ctgccaaata gggcgataat tcttgtgaag aaagcgtttc agataaggag cttgtaatca
     1261 cccctgaagc cgttttttca accaagcgaa ttggcttttt ttcatgataa accttgaggc
     1321 tatctcgaaa atcaatcacg gcgtattcga ttctattttt ttcgtaaaca aacacctgtg
     1381 tctgattcag agaatccttt gattttagca gtacataggg gcgccctact ccgattttac
     1441 gcacatcaaa tacctcacga aatgtcgttg caacctcgta gattttggct tgagacactc
     1501 cgtgattgct taaaattccg ccaaaagtat ctccagacat taccgtatca cggaccactt
     1561 caaaatcatt gagtatcatc ccgtattctt ccattattgg atcgggctct agtaccactg
     1621 tagcggagtc tttttcctca ccacaagaaa caagcaatcc aattaaactc aaaagcaggg
     1681 caataaataa tttatccatt ttcctaacac tcatggcccc aattttgtcg ttcctgatca
     1741 ctccacaatt ctggaaaaaa caggcgtttt tggtattttg gatgcatgta cttcgcccag
     1801 gcacttcctc cagtggccgc agcttgattt tggccactat ttaaatattt attcgctgtg
     1861 cgataatgcg ccatgaccca agtgatgttt acggtgtaat cgtaatggcg catggccttt
     1921 atgagctccg gatttttttg atcttctgca ggcaaagatt taaatcttgc cgccaaatta
     1981 attgtgttat actcttgggt aaaagcgaca aattcatcgc gatagcgctt ttcaaaggcg
     2041 cttaataggt aagtcttttt acccgtttcg taatcttttc ccgccgcctg ccaataaagg
     2101 tggtctagag cgtgctcata aggtgtattg cggtctattg tttctcggaa acgcgcatcg
     2161 attaaattga tcagctctgt tgaggcgaat tcaattttac gatactgagc gctttgaaat
     2221 cctgatgcgg gggccaatga atttctgaat ttcatatatt gctccacttc catcccttgc
     2281 gtcataatat cgaatgaggt ggtgagcata tcaaaatacc gagaaattct cagtaaacgc
     2341 tccgtaaaaa aagcagtagt cagtgattta tggtgcgcca cttgttctat ctcccaaagg
     2401 atcatcttga agatcaactc attgatctga tgatacataa taaagaccat ttcatcagga
     2461 aatacggtac gcttagtctg cagcccaagg agcgcatcga cttgaatata atcccaatac
     2521 gttaaaggct cttgctggag caatcctgag agatgcgtat tgaggtcctg acctatggca
     2581 tcgtactttt cttgaagatc tcctaacaat tcttctcgct tattcaaatc gtttgccatg
     2641 gttataattc caaaatttta aatgggtatt ttaggccttt aaattcatgc aatgacgctt
     2701 ttaatgatcc aacagccaaa tcggctttaa tcaataaggg tattttattt tggtcatcac
     2761 tcacccaaac ggtgacactt tctttttcct taaaaacgcg gcccccttcg acataaggcc
     2821 tgaatttaag tgttttgacc tggccaaatc gggttttgag gtcctctctg ccgagaaact
     2881 tcatgcgaaa cttatagcct tctttgtcaa aaaacatatc caaatcaaca gtctcgccaa
     2941 cgttaatttt gtcgatgtca attgaattac gcagataata aaacgcggaa acgagatcct
     3001 gtgtcagcgg cgtgatatcc gctgtcacct tgacgttatt ttctttattc caaatacgcg
     3061 ccgttaacgc ttctcgatta aaatcaattt gaacgtcttt ggtgtaccct ccttcgttga
     3121 tttttcggat aaatctcagg ggcatttggg tagaacgatc gatatacgat tgataataat
     3181 cctcaacgta aaaaaaccat ttggagattc ccgaagtatg gccctcgcct tggatgtgat
     3241 aaacaggttt tgcgtctaag gttgacgctt gaactttaat cgaagcatag ccggccgtaa
     3301 caaaaccata gtggacacga aatttacacc attcgccatc ggtataggca ctctgaggct
     3361 cttgtgccat aagcagacta ttcaataata gcatacccgc acacaaaaac catcgatata
     3421 atggaataaa aaatcctttc atgttnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatgt
     3541 taaagcgttc cccgagcctc ttgttcgcgc tctatggctt caaataaggc cttgaaattt
     3601 ccttttccaa aactttgagc ccctttgcgc tgaataattt caaaaaacag cgtaggacga
     3661 tccaccacag gtttagtaaa gagctgcaat aaataacctt cctcgtcacg atctattaaa
     3721 ataccgtgtt gtttgagtac ggaaacatct tcatcgattt ttccaacacg atcgagcaaa
     3781 tcttcatagt acgtttcggg aacatataag aactcaaccc cccgcgcgcg catcgccgag
     3841 acggtagaga caatatcatc agtcgctaca gcgatatgct gtacgcctgg cccgttataa
     3901 taatcgagat actcctcgat ctgagatttt ttcttgccct cagcaggttc gttaatcggg
     3961 aatttaatgc gcccattgcc gttactcatg accttactca tcagggcggt ataatcggtc
     4021 gaaatatctt tgtcatcaaa agaaataatc tgggcaaatc ccatgacttt accgtaaaat
     4081 tcacaccacg tattcatctc atcccaatcg acattaccca ccatatggtc aataaattta
     4141 agccccacag gctccgggtt ataatgtgag gtccaaggct tataaccagg caggaacacg
     4201 cctttgtagt tcttgcgctc tacaaaaata tgaacggtct ctccgtaagt ataaatcccg
     4261 gagcgcacca catgcccctg atcatcttct tccacagtgg gctccataaa agatcgggcc
     4321 ccgcgcttgg tggtttcctc ccaagactta gtggcatcat caacccagag cgccacaact
     4381 ttgaccccat caccgtgttt attgatgtgt gcatttatgg ggccatcagg atttagtggt
     4441 gtggtcaata ccaggcgaat tttgtcttgc tttaagacat aagacacttt gtcttttgcc
     4501 ccagtctcta aaccagcata ggcctcagat tgaaaaccaa aggcggtttt ataaaaatgt
     4561 gccgattgct ttgcgttacc cacgtaaagc tctacataat ccgtgcccag tagaggtaaa
     4621 aaatcctcag cttcgtcgaa tattttcttt agggaatact ccgtattttg aaggtgctct
     4681 aagtttttaa tttctgccat gatcaatgga tatataattt gttaatccaa ccaggattga
     4741 taataattgc cgtcggatat ggccaagcct tgctctgtca ccattaacgg tttaaaagtg
     4801 tcgaccatta ccgccaattc ctctgtttgg gtcttgccta tactgcgctc agttgctcca
     4861 ggatggggcc catgggggat tcctgcagga tgtaacgaaa tatgccccgg ggcaatatcg
     4921 ttacgactca taaaatcacc atcgacataa taaataacct catcagaatc gatattactg
     4981 tgattgtaag gggcaggtat gctcaacgga tgataatcat aaagtctcgg cacaaaactg
     5041 cacacgacaa atgccgcagt ctcaaaagtc tgatgcactg gcggtggttg atggattcgc
     5101 ccggtaatgg gttcaaaatc gtgaattgaa aaggcatagg ggtaattata cccatcgtag
     5161 cccacgacat caaaaggatg cgtcgcataa accatgtcaa tcaaatcatt ttgcttttta
     5221 attttcatca aaaagtcccc ttgttcgtta tgcgtttcta aagcctgggg tttgcgcata
     5281 tcgcgctcgc aaaacggcga atgctctaac aattgaccga accaattgcg atagcgtttc
     5341 ggagtgtaaa tcgggtgatt ggattccaca ataaagaggc gattttcaga gccatcaaac
     5401 tccatctgat aaatcactcc tcgaggcacg agtagataat cgccataccc aaagggtata
     5461 ttgcctaaaa acgtctttag ggttcccgag cctttatgca caaaaatgag ctcgtcagca
     5521 tcggtatttt tataaaaata atcggttacc gattttctgg gcgccgccaa aataatcgta
     5581 caatcactgt ttgtgagcac gggtgtacgg ctctctaaat aatcatcaca aggcgccaca
     5641 tcaaaaccct taagtcgata cgactgaata ttattggctt gggcaatctt tggtgcgaca
     5701 ctcttttgac ttaaaatttc tttgacctga gtggggcgat gctcgtgata aatattagaa
     5761 tacattccgt cgaagccaat ggttccgaac aactgctcgg cataaagact gccgtctggc
     5821 ttgcggaatt gagtatgtcg cttaggggga atttttccga gttggtgata aaagggcatg
     5881 gtaacttggt tctttaactt gtggtgttgt cgtcattttt tactgctcta aattacattt
     5941 ttttaggctc ttttggggga tttttggaca gaaagtaagc cgaagtaaaa acgcaatccg
     6001 gacataaaaa ttgtttgttt tttgaggttc agtcccctga aaatagcctc atgctccgga
     6061 aaaccctaaa ggcctcagca gaaacgaccc tctcgattac tcaaaattct gaaaataatc
     6121 cacaatcttt tgcgctcgat aagcgccaac cagtgcgctg atttcgtcaa aagatgcctt
     6181 tttgagtcgt gctggacttt taaaagtgct caaaagggtc tctacagttt tttgaccaac
     6241 ccctggaata ttgtctaatg ccgaatcaat cgcctcttta ctccgttttt gtcggtgaaa
     6301 agtaatccca aagcgatgag cctcattgcg taattgttgt atgactttaa gtgtttcaga
     6361 agttttgtcc aaatacaaag gaataggatc gtctggataa aacaattcct ccaaacgctt
     6421 cgcaatcccg ataatactta ttttaccccg aagccctaac aattccaagc tctttaacgc
     6481 cgatgataat tggccctttc caccgtcaat tataataaga tttggcaagg gctgattttc
     6541 ttccataaga cgcttatacc tgcggtaaac gacctcttcc atagaagcaa agtcatcggg
     6601 tccagtcacc gttttgatat taaattttcg gtattccttt ttggccggtt taccgcgctt
     6661 aaagacaacg caggccgcaa caggatttgt cccttggaga ttactgttat caaaacactc
     6721 aatatgttca ggcaatacgg gcaatcgtaa atctttttgc atttgcgcca taatnnnnnn
     6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6901 nncaatttta gcctgtttga ggcggtctaa tctaaaatat tttgcgttgc gtaaagacaa
     6961 ctccaaaagt ttcatcttat cgccctgttt tggaaccgtg acctctaccc cttcaggagt
     7021 atttatttta tgagccgcaa taacattttt ggcctgcaaa ttaaaacgtt gtctcagctc
     7081 gataaaagct aattccaaaa gcgatttgtc cgattcgtct aacttctttt ttaactcgat
     7141 ggtgtgagag cggacaatac tcccaaaggc cacttgcaag aaattcacat aggcaaagtc
     7201 ctcatccgaa cgaatgctat agacctctgt gtctacaatt tttggactca ctacggtgga
     7261 tcgggcctga tagttttcca aaatatctat tttttctttg atcgcagcgg ccgcttcaaa
     7321 ctccagattt gccgcatgct ggttcatttt ggccttgaac tgaagcaaag acgccttaaa
     7381 gttcccttta aggatttgat tgatggcctc gatttgctgt tggtaatctt caaattcttg
     7441 gtgcccttca caagcgccta aacaattacc aatatggtat tctagacaca ctttatattt
     7501 tccagactca attttgtcct cggacaaatc ataattacaa gttctcaacg ggtaaagccc
     7561 ccttatgagc tctagcaagg tctgaacagt gcgcatttga gtgtatggac cgtaatactg
     7621 actcccgtct tttattaatc tacgggtcat aaataccctg ggaaaaggct cgttcttgac
     7681 acaaatccaa ggataagact tgtcgtcctt aagcagtaca ttatatcgtg gctgatactt
     7741 tttgatgaga ttgttctcta acagaagtgc atcggtttct gtatcgacaa cgatatgacg
     7801 aatcttatgg atttttttga ccataatcct tgttcgcgca ttatcgtgtt gcttgttaaa
     7861 ataactgcgc acacgctttt gaagattttt ggccttaccg atatacaaca gtttctcctg
     7921 cttatcataa aattgataga cccctggtgc atcaggaagg gtcgcaattt ggagtgtcat
     7981 cgaaacttct gccatacccc aaagatacgt caactcaatg ttagaaaaca gcgttattat
     8041 ttttcatacc ttgcattaaa gtggataaaa tgaatattgc cattctttcg cgaagcgccc
     8101 agctgtactc tactaagagc ttgttagact gtggcttaaa acaccataac atggaagtta
     8161 tggaccccaa cttgtgccat gtaggtacca aagacaataa ggcggtattg tattacggga
     8221 cagaaatcgt cgacgatctc gatgcggtaa ttccccgcat tggcgcctcc aataccttct
     8281 ttggcgcctc actggtccgc caatttgaga gcatgaatgt ctttagcacg gtgagtgccg
     8341 aggccattct ccaatcccga aataaatgga cttgtcagca aattctcagt caacacagca
     8401 ttcctacgcc caccacattt ttaggtcatc cccctaatcc agaagatatc ttgtttcatt
     8461 tcggcggacg tccagtggtc ataaaattgc ttcaaggcac gcacggccaa ggggttattt
     8521 tggccgaaag caccgcttct gcacgaagta ttatggaaac gctcaatacc tctaaagtcc
     8581 gttttttggt ccaagaatac attgcggaat caaagggaag tgatttgcgc gccatcgtgg
     8641 tcgatggcgc ggtagtcgcc tccatgaagc gctcgagtaa agccggtgaa tttcgctcaa
     8701 accttcatcg cggggggcaa tctgtgccct acaccctgag tccagaagaa acccacatcg
     8761 ccattcaagc ggccaaagca cttaatttag gggtttgtgg gattgatatt ttacagagtg
     8821 aacgcggtcc cttaattctc gaaattaatt caaccccagg cctggagggg attgaaacaa
     8881 caaccggggt cgatattgcg caaaaaatca tcagttatat cgaacgcaat cgaaattcat
     8941 gagtaaaacc agcagttcaa tacatcttct gggcttggaa attgctccag gtcaaagtgc
     9001 ccaggcgcga ttgcaagtag cgcatttaca caatagaacg ccgatagaag tgccggtatt
     9061 tattgaacac gccattaagc ccggaccgac tctattgttc ttggcgggaa ttcacgggga
     9121 cgaggttaat gggattgaaa tcctgcgcca atgtatcgca aagggcatta caaagccccg
     9181 gaagggcaca acgatttgta ttcctgtggt caatgtgatt ggctatgtcc acaatcagcg
     9241 ggatttacct gatggccgtg acctcaatcg cgcgtttcct ggaaaaaaaa cgggctcatt
     9301 ggccgctcaa attgcgcatc aactcaccca gtgggtgctc cctcacaccg atttagtcgt
     9361 cgactttcat accggtggcg ctcaacgttt taacgcgcca caaattcgct taagccaaga
     9421 tgatcccgag ttgttaaaaa aagccaatgt ctttggcgct ccatttatca ttcacagcaa
     9481 acctacgccg aaatcattgc gtcatacctg tgataaaaaa ggaattccgc tcttactttt
     9541 tgaaggcggc aagagtaatg atataacgcc gtcggtcagt aatactgggg taaacgggat
     9601 caaacgattg atgtatgaat tgaaaatgct ttcgcctaaa ttcacggtca gcaaaccaaa
     9661 atacaagagc attgaaatag taaacagcag ctggatccgt gcgggctcct cgggcatgtt
     9721 caagccgctt atcgaagtag gccgatggac tgaaaaagga gcaaacattg gtcagctttc
     9781 ggacccgtat ggtcaatcct caatttcggt tttggcgccc aatgcgggct atatttttaa
     9841 tgtcaatcaa gccccgacgg tttaccaagg cgatgcgcta tttcacattt caacagacat
     9901 aagaaacggc caaaatgagg gataaaaaga ccattcgcgc gcaggtcatg gcacgaagaa
     9961 aagcattgac tgcaggacaa caagaggaaa tgagtttggc cattgcaaac caactcctgc
    10021 gttgtgatat ttggcaaggc acctattacc acttgttttt gaccatagcc aaaaacggcg
    10081 aggttgatac ccacccgatt ttagatattt tatttggtag agataagaac attgtcctct
    10141 caaaagcaaa ttttgaaaac gcgagcctga gccattatct cttgactgag caaacaagac
    10201 ttgttacctc ttcatatggc atcccagaac cagaaaatgg acaagaaatc gctcctgatc
    10261 tgctagacgt cgtctttgtt cccttattgg cttacgataa aaatggcatg cgtttgggtt
    10321 atggaaaagg tttctacgat cgatttttgg ccctttgttc gaaaaattgt ctaaaaatcg
    10381 gcctttcttt ttttgaacca gaacccgacc taatcccgag tgaatcatgg gatcttgccc
    10441 tggatttggt tatcactcct ggcgccgttc atcgatttta attgtttttt agcggattat
    10501 ttaagccaat tattatctta gtggtcccaa aacttataaa atatgaactt tctttctacc
    10561 aaaagacggt cccattcatt actcaatggc catccgaaat cagggcagtt taaagttaat
    10621 ccaaatcatt tcgaccccaa ataccaagcg gagcaaggca tcatatcgcc cctggaggat
    10681 atcgcgaacc aactcattcg cttgaataag caaaatgcgc aactcgtgtc ttttgccgag
    10741 catatgtgcc gacaaattcg cagtgtaacc ggaaatttag ggctcactgt agagctgtta
    10801 gaacaaacat caaacgagca agaaagaatg gaactcatgc aacagatcgc cgagatttct
    10861 gcaaccatga accagaccgt agaatagctc aatcagatgg cttattgttc ccgactcacc
    10921 cc
//
LOCUS       DPUP01000198            3975 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5424,
            whole genome shotgun sequence.
ACCESSION   DPUP01000198 DPUP01000000
VERSION     DPUP01000198.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3975)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3975)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..90)
                     /locus_tag="DHV98_07395"
     CDS             complement(<1..90)
                     /locus_tag="DHV98_07395"
                     /inference="COORDINATES: protein motif:HMM:PF01432.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06166.1"
                     /translation="MQTLRQIGFATLDMAYHDGQFHNRDVVAFE"
     assembly_gap    155..365
                     /estimated_length=211
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<366..1923)
                     /locus_tag="DHV98_07400"
     CDS             complement(<366..1923)
                     /locus_tag="DHV98_07400"
                     /inference="COORDINATES: protein motif:HMM:PF01432.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M3"
                     /protein_id="HCK06167.1"
                     /translation="MTNPLLESFDVVPFDRIEAKHFLPALEALINRAKSDIDQITQNQ
                     DPPTFENTLLPLEFSSLHLERVSQCFFNLLSAHTSETLQNEAQHISPLLSHFKNDILM
                     NAPLFERIKSIYNRKETAEITAEGQQLLERTYKSFCRNGALLTNVQQEEVRAIDSALA
                     KATLTFGNNVLSETNAFSLPIEDEATLEGLPKSFLARAAQKAKEKNLSGYLIGLEFPS
                     YMPVMKFAKNRALRQKLWLAYGARAAQNNAQDNKAIISEIVTLRQRRAEILGYPNHAA
                     FVLEERMAQSAQNVNDFLSDLAKKAKPAAERELEELQNFASEQENIEQIQPWDQSFFS
                     EGLKKKRFNWDEEKLKEFFPLNQVLTGVFSIAKRLYGLRFEQDAAIPVYHNEVTAYRV
                     FDEHGVFKALLYCDFHPRPSKRDGAWMTSFKTQHKTSQENHRPHISIVCNFTHPDAEG
                     IALLTFQEVTTLFHEFGHALHGMLADTNYPSLSGTNVSWDFVELPSQIMENWCFQQES
                     LSLFAKHYKSQ"
     gene            complement(1923..2417)
                     /gene="purE"
                     /locus_tag="DHV98_07405"
     CDS             complement(1923..2417)
                     /gene="purE"
                     /locus_tag="DHV98_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HCK06168.1"
                     /translation="MSKVAIVMGSTSDLKVMQAAVDILKGFDIETEVDIVSAHRTPEK
                     LFDFAQNAHKRGISVIIAGAGGAAHLPGMVASLSPLPVIGVPVKSSNSVDGWDSILSI
                     LQMPNGVPVATVALDGAQNAGILAAQIIGSHDQCVLDKLLTFKQGLKIKVEQGXQGAK
                     SLKK"
     gene            complement(2414..3574)
                     /gene="purK"
                     /locus_tag="DHV98_07410"
     CDS             complement(2414..3574)
                     /gene="purK"
                     /locus_tag="DHV98_07410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009779154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HCK06169.1"
                     /translation="MDQFFSSEFSLGILGGGQLGKMLLTETQKWDIKTYVLDPSADAP
                     CRLGSNVFVQGSLMDYDTVYNFGKSLDVLTIEIEGVNLEALADLENLGVKTYPRVETL
                     RFIQDKGVQKSFYADHQIPTAPFELFENKDVLIAAYQNGEFSLPKVWKVCRGGYDGNG
                     VQILRTPEDFNRLPQAPCILEHLVPFTHELAVIVARSPHGEERTYPVVEMEFHPEANQ
                     VEYVLCPARIDDSLAKKAQDVALMVSRALKHVGLLAVELFATESGEVIVNEVAPRPHN
                     SGHYSIEASYTNQFEQHLRAILGLPLGETKSKGAGIMVNLVGAEGHTGPVHYEHIEHI
                     LAIPGVTPHIYGKKETRPFRKMGHVTIIHEDMTQARLIAEQVKNSINVISKS"
     gene            3713..>3975
                     /locus_tag="DHV98_07415"
     CDS             3713..>3975
                     /locus_tag="DHV98_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010134368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HCK06170.1"
                     /translation="MKNIVLFGPPGAGKGTQAQILKEQFGLVHISTGDVFRKNIKEQT
                     PLGALAKSYMDQGHLVPDQVTIDMLAAEVEARPEAQGFIFDGFP"
BASE COUNT          982 a          828 c          837 g         1115 t
ORIGIN      
        1 ctcaaaggcc acaacatcgc gattgtgaaa ttgaccatca tggtaagcca tgtctaaagt
       61 cgcaaagcca atttgacgca gtgtttgcat cccttcttga aaggttttta aggcgttgat
      121 ctgctctaaa taggctgggg gcagtggttc ttgtnnnnnn nnnnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnncttgt gatttgtagt gtttggcgaa caggctcaaa ctttcctgtt gaaagcacca
      421 gttctccatg atctggctgg ggagctccac aaaatcccaa gagacattgg tgcccgagag
      481 gctaggataa tttgtgtcgg caagcattcc atggagcgcg tgaccaaact cgtggaaaag
      541 cgtcgtgact tcttgaaaag tgagcaaggc gataccttca gcgtcagggt gcgtgaagtt
      601 gcaaacaatc gaaatgtgtg gtctatggtt ttcttgactt gtcttgtgtt gcgttttaaa
      661 gctggtcatc caggcaccat ctctttttga gggtctgggg tgaaagtcgc aatacaacaa
      721 agctttaaac accccatgct catcaaaaac tctataggca gtcacttcat tatggtagac
      781 gggaatggcc gcgtcttgct caaaccgcaa tccataaagt cgttttgcaa tactaaaaac
      841 tccagtcaag acttggttta atggaaaaaa ttccttcaac ttttcttcat cccaattgaa
      901 gcgtttcttt tttaagcctt cactaaagaa cgattgatcc caaggctgta tttgttctat
      961 attttcctgc tcagaggcaa aattctgcaa ttcctctaat tctctctcag cggctggttt
     1021 ggcttttttt gcaagatcac tgagaaagtc attgacgttt tgagcagatt gagccatgcg
     1081 ctcttccaat acgaacgcag cgtggtttgg atagcccagt atctccgcac gtcgctggcg
     1141 taaggtcacg atttcgctga tgatggcctt attgtcttgc gcattatttt gagcggcacg
     1201 ggcgccatag gcaagccata atttttgacg taacgcgcgg tttttggcaa atttcatcac
     1261 cggcatgtag ctgggaaatt ccagtcctat taaataaccg ctgaggtttt tttctttggc
     1321 cttttgcgct gcgcgcgcta aaaatgattt tggtaaaccc tcgagggtcg cctcatcttc
     1381 aatcggtaaa ctaaaggcat ttgtttcgct gagcacatta ttgccaaagg tgagcgttgc
     1441 tttggccaat gcactgtcta tggccctaac ttcttcctgc tgcacgttgg tcaaaagcgc
     1501 tccattgcga caaaatgatt tgtaggtgcg ctccaagagt tgttgcccct ctgcagtgat
     1561 ctcagccgtt tctttccgat tataaattga ttttatgcgc tcaaaaagag gggcattcat
     1621 caaaatatca tttttgaaat ggctcagtaa gggggagata tgttgtgctt cattttgcag
     1681 tgtctcactg gtgtgggcac tgagtaaatt aaaaaaacac tgactaaccc gctctaaatg
     1741 aaggcttgaa aactcaaggg gaagcaatgt attttcaaaa gtaggggggt cttgattttg
     1801 cgttatttgg tcaatatcgc tttttgcacg attgattaag gcttctaagg caggtaaaaa
     1861 atgtttggct tcgatacgat caaatgggac cacatcaaag gattccaaca agggattcgt
     1921 cattactttt tcagggattt agcgccttgt tnnccttgtt caactttaat tttaaggcct
     1981 tgtttgaagg tgagcaactt atctaagaca cattgatcat gactgccaat aatttgtgcg
     2041 gccaaaatac ctgcattttg agcgccgtcc aaggctactg tggccacagg gacaccgttg
     2101 ggcatttgaa gaattgagag gatactgtcc catccgtcaa ctgaattact tgacttgacc
     2161 ggaacaccaa tcacgggtag aggagagagt gaggccacca tccccggaag gtgcgctgca
     2221 cctccagcgc ctgcaatgat tactgagatt cctcgcttat gagcattttg tgcaaaatca
     2281 aatagttttt ctggcgtacg gtgcgccgag acgatgtcta cctcagtttc aatatcaaat
     2341 ccctttaaaa tgtccactgc agcttgcatg acttttaaat cactggtact gcccattaca
     2401 atagctactt tgctcatgat ttactgataa cgttaatgct gtttttgact tgttcggcga
     2461 ttaaacgcgc ttgggtcata tcttcatgta taatggtcac atgccccatt tttctgaatg
     2521 gtcttgtttc ttttttgccg taaatatggg gcgttactcc cggtatggcc aaaatatgtt
     2581 caatatgttc atagtgtacc ggcccggtat ggccttcagc gcccactaag ttaaccatta
     2641 ttccagcgcc cttacttttc gtctccccga gcggtaaacc taaaattgct cgtaagtgtt
     2701 gctcaaattg attggtatag gaggcttcga tactgtaatg tccactatta tgcggtcttg
     2761 gcgccacctc attgacgata acttctccag attctgtggc aaataactct acggcaagca
     2821 aacccacatg tttgagtgcc cttgatacca taagggcgac gtcttgggct tttttggcca
     2881 gagaatcatc gatacgcgcg ggacaaagaa catattctac ttgattggct tctgggtgaa
     2941 actccatctc taccacggga taggtccttt cctcgccatg agggcttcgt gcgacaatta
     3001 cggcaagttc gtgggtaaag gggaccaggt gctctaaaat gcatggtgct tgagggagac
     3061 ggttaaaatc ctcaggggtt cttaaaattt gcacgccatt accatcatat ccaccacgac
     3121 aaactttcca aacctttggc agtgaaaatt ccccgttttg gtatgctgcg atcaaaacat
     3181 ctttattctc aaagagttca aagggcgctg tgggaatttg atgatcggca tagaatgatt
     3241 tttgaacgcc tttgtcttgt atgaacctta acgtctctac tcttgggtaa gtttttacac
     3301 caagattttc taaatcggct aaggcctcaa gattaacgcc ttcaatttca atagttaaaa
     3361 catcaagact ctttccaaaa ttgtaaaccg tgtcgtagtc cataagggac ccttggacga
     3421 atacattact ccctaggcgg catggtgcgt ctgcacttgg gtctaaaaca taggttttga
     3481 tatcccattt ttgggtttcg gtcaaaagca tttttccgag ttgcccacca ccgaggattc
     3541 ctaatgaaaa ttcagacgaa aaaaattgat ccataccgca aagttacaat ctttggacta
     3601 aaacatgatg cataaaatgt ccctgactaa aaacttgcta tatgacggcc cttttaggta
     3661 tctttgcccg ataaaatcaa gggctcagcc tttagtttaa ttattcaata tcatgaaaaa
     3721 tatagtgttg ttcgggccac caggagccgg aaaaggaaca caggcacaaa ttcttaaaga
     3781 gcaattcggc ctggtccata tcagtaccgg agacgtattt cggaaaaata tcaaagaaca
     3841 aacaccgctg ggcgctttgg ccaaatctta tatggaccaa gggcatcttg ttccagatca
     3901 ggtgaccata gacatgcttg ccgctgaagt tgaggctcgt cctgaggctc aaggatttat
     3961 ttttgatgga tttcc
//
LOCUS       DPUP01000199            2510 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15562,
            whole genome shotgun sequence.
ACCESSION   DPUP01000199 DPUP01000000
VERSION     DPUP01000199.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2510)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2510)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2510
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            9..1070
                     /locus_tag="DHV98_07420"
     CDS             9..1070
                     /locus_tag="DHV98_07420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HCK06171.1"
                     /translation="MLKNGVYGILILVAAACMSDDGSQYMATPAELDIPPFFESSILP
                     PEIPRDNPLTVEGIALGKALFYDPILSANNTQSCASCHLQSGSFSDPNQFSVGIDGSI
                     GFRNSMPLFNLAWNRRGSFNWDGSAATLEDQIFEPVTNPIEMANTWPNAVAALQNSGT
                     YPELFDAAFGSTAIDSVKVSRAIAQFIRTMISGNSKFDRYLNGQEDLTDAEERGMNVF
                     LDETRGDCFHCHGNPMNPLWTDNRFHNNGLDTFFSDRGLGAVTGDPRDDGLFRTPSLR
                     NLAFTAPFMHDGRFNTLDEVIDHYSEGLVYSETVSPLLKKVSEGGVRLTAEEKSDLKA
                     FLLSLSDPSFTTDSEYQPD"
     gene            1225..1554
                     /locus_tag="DHV98_07425"
     CDS             1225..1554
                     /locus_tag="DHV98_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007646870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HCK06172.1"
                     /translation="MIKVSEHAKSQIDRLMTSDGFDPTHDYVRVGVKSGGCSGLSYDL
                     KFDKKAQEQDQIFEDNGVRIVVDKKSFLYLVGTTLEYSGGLNGKGFVFNNPNASRTCG
                     CGESFAL"
     gene            1570..>2510
                     /gene="sufB"
                     /locus_tag="DHV98_07430"
     CDS             1570..>2510
                     /gene="sufB"
                     /locus_tag="DHV98_07430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HCK06173.1"
                     /translation="MGKFTEDDLKKELETKEYEYGFYTDIESDTFPVGLNEDIVRAIS
                     QKKEEPEWMTQWRLEAYRIWEEMTEPEWANVTYKKPDFQNISYYSAPSKKAKYSSIDE
                     VDPELLETFNKLGISLDEQKKLAGVAVDIVIDSVSVATTFKETLAEKGIIFCSISEAI
                     REYPDLVKQYIGSVVPQKDNYYAALNSAVFSDGSFCYIPKGVRCPMELSTYFRINQAG
                     TGQFERTLVIADQDSYVSYLEGCTAPTRDENQLHAAVVELIALDGAEIKYSTVQNWFP
                     GDKNGKGGVYNFVTKRGICETGAKISWTQVETGSAVT"
BASE COUNT          720 a          531 c          581 g          678 t
ORIGIN      
        1 aatgaataat gcttaaaaat ggggtttacg gaatattgat cttggtggct gccgcgtgta
       61 tgagtgatga tggatcacag tatatggcga cgcctgccga gctcgatatt cctccatttt
      121 ttgaaagttc tatacttccc ccagaaatcc caagggataa tcccctaacg gtagagggta
      181 ttgccttagg gaaagccttg ttttacgacc cgatactttc ggccaataac acccaatcct
      241 gtgcgagttg tcacttacaa agtggcagtt tttctgatcc caaccaattt agtgttggga
      301 ttgatggatc tattggattc cggaactcta tgcccctgtt taacctggct tggaatcgac
      361 ggggctcatt caattgggac ggcagtgccg caactttgga ggaccaaatt tttgagccgg
      421 tcacaaaccc catagaaatg gccaacacct ggcctaatgc cgtagcggct cttcagaatt
      481 ctggaaccta cccagaactt tttgatgcgg cctttggcag tactgctatt gattcagtca
      541 aggtttccag agctattgca caattcatac gcactatgat tagcggtaac tctaaatttg
      601 atcgttactt aaatggtcaa gaagatttaa ccgacgctga agagcgcggc atgaatgtat
      661 ttctagacga aacccggggg gattgttttc attgccatgg gaaccccatg aacccccttt
      721 ggaccgataa tcgctttcac aataacggac tagacacctt cttttccgat cgtggccttg
      781 gcgcggtaac cggtgacccc cgagatgacg gcttattcag aacgccatca ctgagaaatt
      841 tggcctttac cgcacccttt atgcacgacg gccgcttcaa tacccttgat gaagtgattg
      901 atcactacag tgaaggactg gtctattctg aaacggtttc tcctttactg aaaaaagttt
      961 ccgagggtgg tgtcagactc accgcagagg aaaagtccga cctcaaagcc tttttgttga
     1021 gtctttcgga cccatcattt acgacagatt ctgagtatca accagattaa agtcatgacg
     1081 catattttgg tttaacccct ctgttttatt gacttcaata agatcgaaag cctctatagt
     1141 aggataattt taaattctct ttcatctatg gccatacaat cgatttgcgc tatatttgca
     1201 gtaatttaga ataaatctat attaatgatc aaagtcagtg aacacgctaa atcacaaata
     1261 gaccggctca tgacgagcga cggttttgac ccaacccatg actatgtacg cgttggggta
     1321 aaaagtggtg gatgctcggg cttgtcatac gatttaaaat tcgacaaaaa agctcaagag
     1381 caagatcaaa tttttgaaga caatggcgta cgcattgttg tggacaaaaa aagtttttta
     1441 tatctggtcg gaacgaccct tgagtacagt ggcggactca atggtaaagg gtttgtgttt
     1501 aacaatccta atgccagcag aacatgtggc tgcggtgaaa gtttcgctct gtaaggacta
     1561 aaaaatacta tgggaaaatt cacagaagac gatttaaaaa aagaactcga aaccaaagaa
     1621 tacgagtacg ggttctatac ggatattgaa tccgatacat ttccggttgg cctcaatgag
     1681 gacatcgttc gcgccatttc tcaaaaaaag gaagagcctg aatggatgac ccagtggcgg
     1741 ctagaggcct acagaatttg ggaagaaatg accgagcccg agtgggccaa tgtcacctac
     1801 aaaaagccgg actttcagaa tatttcttat tattcagccc cttctaaaaa ggcgaagtac
     1861 agcagtattg acgaagtcga tcctgaactg ctcgaaacct ttaataaact ggggatttcg
     1921 cttgacgaac aaaaaaaact cgccggggtt gccgtggata tcgtgataga ctctgtttca
     1981 gtagcgacga catttaagga gaccttggcc gaaaaaggca ttatcttttg ttccatatcg
     2041 gaggccatta gagaataccc agatttagtg aaacagtaca ttggtagtgt tgttccccaa
     2101 aaagacaatt actatgcggc cttgaatagt gcggtattta gtgatggctc attttgttat
     2161 atcccaaaag gggttcgttg tcccatggag ctttccacgt actttagaat caatcaggcc
     2221 gggacaggac agtttgaacg caccttggtc atcgcagacc aagacagtta tgtgagttat
     2281 ctcgaagggt gtaccgcgcc aacacgtgat gaaaatcaat tacacgccgc cgttgtagag
     2341 ttgattgctt tagatggtgc agaaattaaa tactctaccg ttcaaaactg gtttccaggg
     2401 gataaaaacg gtaaaggggg ggtgtataac tttgttacta agcgtggaat ttgtgaaaca
     2461 ggggccaaaa tttcttggac tcaggtggaa acaggaagcg ccgtgacctg
//
LOCUS       DPUP01000200            2893 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_21913,
            whole genome shotgun sequence.
ACCESSION   DPUP01000200 DPUP01000000
VERSION     DPUP01000200.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2893)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>342)
                     /locus_tag="DHV98_07435"
     CDS             complement(<1..>342)
                     /locus_tag="DHV98_07435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018942429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06174.1"
                     /translation="LYITHDGGEHWKQITEKEGLPKGDLGRIGLAIAPSNPDRIYALV
                     EAKKNGLYASDDGGVTWALVNDKNDIGNRPFYYSDIFVDPQNQYKVYSVFTYVNVSID
                     GGKSFEELMPAY"
     assembly_gap    343..494
                     /estimated_length=152
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<495..1170)
                     /locus_tag="DHV98_07440"
     CDS             complement(<495..1170)
                     /locus_tag="DHV98_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013752061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06175.1"
                     /translation="MFASLFFPLQQAKAQTVDPEVFKEIKPREIGPGGMSGRVTAIDV
                     VLNQPDVIYAGTASGGVWKTTGGGQTWIPIFEDQATASIGALTVDQSNPSIVWVGTGE
                     GNPRNSLNGGKGVYKSLDGGRSWQLMGLEATRNIHRIIVDPNDSNTVYVGAIGSPWGA
                     HAERGVFKTIDGGKTWTHILKTNEHSGVADMVMDPTNPNKIIVAMWEHYREPWFFKSG
                     GAGSGLY"
     gene            complement(1299..>2893)
                     /locus_tag="DHV98_07445"
     CDS             complement(1299..>2893)
                     /locus_tag="DHV98_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008615408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidase M1"
                     /protein_id="HCK06176.1"
                     /translation="RGSITPERAWWDLQHYDLEVTLLINNKSLVGKNTISYRALTAYD
                     TKDTAERSSLDTKSALMQIDLQGPMKIDSVLQNGQRLSFTNQGPAHFIELIQKHELDK
                     IYQVTCYFSGAPIVAQNPPWDGGFTWDSDDLGRPFIANANQGIGASVWWPNKDHPYDE
                     PDRGVDLKITLPKPLVAVGNGRLIEQKELNETQHRFHWRVNAPINNYGVNINVGHYLR
                     FSEQYTGLDGPLDCTYWVLDYNLAQAKAQFKQVPDMLEAFEYWFGPYPFYEDGYQLVE
                     VPYLGMEHQSSVTYGNGYRNGYRGTDLSSSGWGMTFDFIIIHESGHEWFANNITNNDV
                     ADMWIHEGFTAYSENLFLDYFHGKEASSAYVIGTKKRILNDRPLIGTYEVNHEGSSDM
                     YYKGANILHTLRQLIEDDQKWRQILIGLNREFRHQTVSSQQVEEYITQASEIDLAEFW
                     DQYLRTPNLPKLNYTLKNNELKYKYSQIIDGFDMPVRVNINGEMIWLYPSPEWKTHTA
                     DQPIETFAIDQNFLVLEGADSQ"
BASE COUNT          740 a          621 c          586 g          794 t
ORIGIN      
        1 gtaagcgggc atgagttctt caaatgattt accaccgtcg attgaaacat tgacataggt
       61 aaatactgaa taaactttgt attgattttg ggggtcaaca aaaatatcag agtaataaaa
      121 cggacgattt ccaatatcat ttttgtcatt gactaaagcc caagtaaccc cgccatcgtc
      181 actggcataa agaccgttct ttttggcttc aacgagcgca taaattcggt caggattact
      241 cggagcgatc gcgagtccaa tacgtcccaa atcccctttg ggtaagcctt ctttttccgt
      301 gatttgtttc cagtgttctc caccatcatg ggttatatag agnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnntataga gtcctgagcc cgctccacct gatttaaaaa accaaggctc
      541 tctgtagtgc tcccacatgg ccacgattat tttatttgga ttggttgggt ccataaccat
      601 atcggcaact ccggaatgtt cattggtttt caaaatatga gtccatgtct ttcctccatc
      661 aatggtttta aaaaccccac gctctgcatg ggcgccccaa ggagaaccaa tagcccccac
      721 gtagaccgta ttcgagtcat tagggtcaac aattatgcga tgaatattgc gtgtggcttc
      781 taatcccatt aattgccagc tgcgtccgcc atccaaggat ttatagacac cttttcctcc
      841 gttgaggctg tttcggggat ttccctcacc agttccgacc caaacaatcg atggattact
      901 ttgatccacg gtcaaggccc caatagacgc tgtggcctga tcctcaaata ttggaatcca
      961 ggtttgtcct ccgcctgtcg ttttccatac cccaccagag gctgttccgg cataaatcac
     1021 atcaggttga ttcaacacaa catcaattgc ggtaacgcgt ccagacatgc cgcctggacc
     1081 aatttcacgc ggttttattt ctttaaaaac ttcaggatca acagtttgtg ccttagcttg
     1141 ctgtaaagga aaaaatagac tggcaaacag ggcaaatagg aaggtaaaac gcatgattta
     1201 caattaaaat tacacgtaag aaagttaata aataatagcg acctaaggga caccaaaaca
     1261 cggtcaacac ccgataaata aattggtttt atagtgcact actgagaatc agcaccctct
     1321 aggactaaaa agttttgatc gatggcaaaa gtctcaatgg gctgatctgc agtatgtgtt
     1381 ttccactcag gactcgggta aagccaaatc atttcaccat taatattcac ccgcacaggc
     1441 atgtcgaatc catcgataat ctgactgtat ttgtatttaa gttcattatt tttcagcgta
     1501 taattaagtt ttgggaggtt tggggtgcgc aggtactgat cccaaaattc tgccagatct
     1561 atctctgagg cctgagtgat gtattcttcg acttgctggg aacttacggt ttgatgacga
     1621 aattcgcgat tgagtccgat aaggatttga cgccattttt gatcatcctc gatgagttgt
     1681 cttaaggtgt gtaagatatt agctcctttg taatacatat cactacttcc ttcgtggttt
     1741 acctcataag ttccgatgag aggacgatcg ttgagtattc tctttttagt cccaatgaca
     1801 taggcactag aggcctcttt gccatgaaaa taatccaaaa acagattctc gctgtaggct
     1861 gtgaagcctt cgtgaatcca catgtcagca acgtcattat tggtgatgtt gttggcaaac
     1921 cactcgtgac ctgattcgtg aatgatgata aagtcaaagg tcatgcccca gccagaacta
     1981 ctgagatcgg tacccctata gccattgcgg tagccattgc cgtaggtgac actgctttgg
     2041 tgttccatgc ccagataagg tacttcaacc agctgataac catcctcata aaaagggtag
     2101 gggccgaacc aatattcaaa ggcttcgagc atgtcaggga cttgtttgaa ttgcgctttg
     2161 gcctgcgcta agttgtaatc taaaacccaa tacgtgcagt ctaatgggcc gtcaagaccg
     2221 gtgtattgtt ctgaaaatct gaggtaatgc ccgacattaa tgttcacccc ataattattt
     2281 atgggagcat taacgcgcca gtgaaagcga tgctgggttt cattcaactc tttttgttct
     2341 attaatcgcc cattaccgac agccaccaag ggcttgggta gggtaatttt taagtcaacc
     2401 ccgcgatccg gttcatcata ggggtgatct ttattgggcc accatacact ggcgccaatt
     2461 ccttggtttg cattggcgat aaatgggcgt ccgaggtcat ctgaatccca agtaaaaccg
     2521 ccatcccatg gcggattttg tgcaacaatt ggtgcgccag aaaaatagca ggtcacctga
     2581 tatattttgt ccagttcgtg tttttgaatg agctcaataa aatgagccgg cccctggttt
     2641 gtaaatgata agcgttgtcc attttgtagg acactgtcaa ttttcattgg gccttgaaga
     2701 tcaatttgca ttaaagcact ttttgtgtcc aaagaactcc tttcggcggt gtcctttgta
     2761 tcgtaagcgg ttaaagcgcg ataactgatt gtatttttac caacgagact tttattgttg
     2821 atcaaaaggg tcacttccag gtcataatgc tgaagatccc accatgcgcg ctccggggta
     2881 atggaaccac gca
//
LOCUS       DPUP01000201           13260 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7736,
            whole genome shotgun sequence.
ACCESSION   DPUP01000201 DPUP01000000
VERSION     DPUP01000201.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 13260)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 13260)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13260
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>461
                     /locus_tag="DHV98_07450"
     CDS             <1..>461
                     /locus_tag="DHV98_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCK06177.1"
                     /translation="LKHKSPELKNPFVIPGIRNVKIESQLNPNYSFENFLEGDSNRLA
                     RSAGYAVANKPGGTSFNPLLIFGGVGLGKTHLAHAIGVEIKEKYPEKTVLYISAEKFT
                     QQYIESVKKNNRNDFIHFYQIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLH"
     assembly_gap    462..607
                     /estimated_length=146
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <608..1255
                     /locus_tag="DHV98_07455"
     CDS             <608..1255
                     /locus_tag="DHV98_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HCK06178.1"
                     /translation="IFNHLHQNGKQVILTSDKAPVDMMDIEQRLLSRFKWGLSAELNH
                     PDYETRVAIIKNKLYRDGVEMPEEIIEFLANNIKTNIRELEGAIISLIAHSSFNRREI
                     TIDLAKKIVDNYVKHTKREVSIDYIQKVVSEYFQMDVDTLQSKTRKRHIVQARQLAMF
                     FAKKFTKASLASIGSQIGQRDHATVLHACKTVDNLSSTDKQFRKYVEDLNKKLTL"
     gene            1287..1754
                     /locus_tag="DHV98_07460"
     CDS             1287..1754
                     /locus_tag="DHV98_07460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase"
                     /protein_id="HCK06179.1"
                     /translation="MKKTKILMVCLGNICRSPLAEGILQDKLDPARFSVSSAGTGSWH
                     VGNPPDPRSVDIAQKRGLDISRQRAQQFQGSFFNEYDLIYAMDQSNLSDLKSLAKTPE
                     QLHKLSLLLDAVFPGEGVDVPDPYYGGASGFSEVYDLIDRACIAIAHKIDQKK"
     gene            1821..3191
                     /locus_tag="DHV98_07465"
     CDS             1821..3191
                     /locus_tag="DHV98_07465"
                     /inference="COORDINATES: protein motif:HMM:PF07995.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06180.1"
                     /translation="MRLIYRLALLTIIGNLSLSAQSFSLAPLANGFNAPLNIQHAQDE
                     RLFIVEQGGRIKILNPDGSVESTPFLNLSSSISSGGERGLLGLAFHPNYTDNGYFFVN
                     YTNPNGNTQISRFSVDPLNPNLADPTSELPLLTITQPYANHNGGCIAFGPDGYLYIGM
                     GDGGSGGDPQNYAQNTSSLLGKLLRIDIDNPSGNLNYSIPEDNPYFGSTTQAQEIWAY
                     GLRNPWKFSFDRDNGDLWIADVGQNAFEEINKVAYTQADINYGWRCYEGDQSYNTSNC
                     VDPSGMEFPLAVYPHSIGSSITGGYVYRGPENSPLHGHYLFADFVSGYLGVLDPASGN
                     VVFDQNLNQNWASFGEGIDGSLYLTAFNGVVYKIEPEIVLGQPDPVKIFQISPNPAQD
                     QTLINTTNISGYVIYDLKGQKITSAEINQDRTVLSTADWPSGLYLIQARHRDGHTSIQ
                     KLMVHH"
     assembly_gap    3229..3240
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3241..>3595
                     /locus_tag="DHV98_07470"
     CDS             3241..>3595
                     /locus_tag="DHV98_07470"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06181.1"
                     /translation="MGEHAPMSVLPLTVLKVIEATNHYVVEHEKNARRFIKSIYPQKN
                     QADLKLSTINKFTDPLEIPELIRPCLEGFDLGIISDAGCPGVADPGAEVIHMAHKNGI
                     KVVPLVGPSSILLALM"
     assembly_gap    3596..3714
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3715..4026
                     /locus_tag="DHV98_07475"
     CDS             <3715..4026
                     /locus_tag="DHV98_07475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06182.1"
                     /translation="LNGQKFAFHGYLPIDKDERKQSLKQLEKQSQQEGQTQIFIETPY
                     RNNQLLEAMTTHLKADTQLCVACNLTLQDEFILSKEIRQWQPAAHDLHKRPCIFLFLA
                     K"
     gene            complement(4045..4698)
                     /locus_tag="DHV98_07480"
     CDS             complement(4045..4698)
                     /locus_tag="DHV98_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06183.1"
                     /translation="MIDLRHKGLASHWLVGIFASLMGFVGVSRFDQSDRTFDDFDDAS
                     LCYHVPVHVPNSAPKDLNHAPVLDNSFVAFKEALAFKESSGDYQAINRLGYLGKYQFH
                     MNTLSLLGIHDKQRFLAQSELQERAFFWYTARNKWILRKDLKRSVGRQIKGIEITESG
                     ILAAAHLAGAGNVKKYLRSGGNFVFEDAFGTSIEAYLRDFAHYNTAAIPAQEKWIDL"
     gene            complement(4832..>5112)
                     /locus_tag="DHV98_07485"
     CDS             complement(4832..>5112)
                     /locus_tag="DHV98_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCK06184.1"
                     /translation="DFQQVIRRVLYKDLSLDSPYNTYKYKGLPPGPITMPDISSIDAV
                     LNAEPHGYYYFVADPERPGYHSFSKSLSEHNAKRKDYIKWISAQGIKR"
     assembly_gap    5113..5239
                     /estimated_length=127
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5240..5935)
                     /locus_tag="DHV98_07490"
     CDS             complement(<5240..5935)
                     /locus_tag="DHV98_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013188292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HCK06185.1"
                     /translation="MKLKGVVLGVLFTIVIVLTGRYTYRLIWAANLSLNEAKVDVFIG
                     TNPDFDAVLSAVGPYITRMSDFKLMARVKRLNAFPKAGRYVLEQGMNNREIIDVLRSK
                     NEPILLKFNNQERIEDLAGALARQIEPDSLTLLEAFKDPEFLESAGVAQEQLLSLFIP
                     NTYEIYWNTDAERFRQRMLGEYKAFWNEKRLKKAKAIGLSPLEVSALAAVVQKESVKV
                     SERPTIAGVYLNRI"
     gene            complement(5932..6471)
                     /locus_tag="DHV98_07495"
     CDS             complement(5932..6471)
                     /locus_tag="DHV98_07495"
                     /inference="COORDINATES: protein motif:HMM:PF13420.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCK06186.1"
                     /translation="MSVNLIGTNIFLRALEPEDLDYIYRTENDPAFALYGDQHPPYSR
                     HLLKAYIDQAHQSIYQTQQLRLVIHHKLTNQPIGLIDLFDFDSKNKRVALGILITEPS
                     FRQQGLGREAALLFIDYAFESLDCHQIYSLIAPANKASIGLFSSLSFEEGAQLKGWWC
                     NLRGEFQDMLVYQKFRTKR"
     gene            complement(6462..7229)
                     /locus_tag="DHV98_07500"
     CDS             complement(6462..7229)
                     /locus_tag="DHV98_07500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HCK06187.1"
                     /translation="MAGHFYKYHGTGNDFILVDNTKGDFSNPSAERISKLCHRRFGIG
                     ADGLILLESSTQADFKMVYFNADGHKGSMCGNGGRCVTHLAHNLGYVPNQGHFEGPDG
                     LHQFRVAHPQISISMGDVFEIRTVKQGLFVDTGSPHLICFRDNIKDLDVTTLGRKLRN
                     EFEPGGVNVNFVCKTNDGFSMRTYERGVEAETLSCGTGATAAAIALMETGAVNQGSIA
                     LETLGGILSVSCVREDSAYRNIWLTGPVMKVFKGEFQ"
     gene            7361..8752
                     /locus_tag="DHV98_07505"
     CDS             7361..8752
                     /locus_tag="DHV98_07505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HCK06188.1"
                     /translation="MKRFFSTLGISVITAVTSLAVYDHYQEKNQSNPAASTMPMNMVQ
                     TNFSSINSEVLDTDFTLAAENTVNAVVHVKNTSISRQPGNMMELFFGGGAPRAMIGTG
                     SGVIISPDGYIISNNHVIERATDLEVTLNDNRIYNAEVIGTDPKTDIALLKIESDDPL
                     PYIPFADSDAVKIGQWVLAVGNPFNLTSTVTAGIISAKARDLNEFDNNPQSFIQTDAA
                     VNRGNSGGALVNTNGELVGINTAITSETGSYVGYSFAVPSNTARKVIEDLLEYGNVQR
                     GFLGIQGSGLDAKRAQMLGIEDTQGVYVASVESDSGAEQAGLEQGDVIKNIDGISIYK
                     FSDLTGYLNAKRPNDIVSLTLNRKGKEMVKNVVLRKIDTYTIADLGLTVKNTSKMQRE
                     KRSVDHGVIVTKVNNQELLSMGLDGAIITHVNDVAINTIDDLKNTVDNKFGGPMKLTF
                     YDRHGEKSAILFR"
     gene            8967..10415
                     /locus_tag="DHV98_07510"
     CDS             8967..10415
                     /locus_tag="DHV98_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008639211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HCK06189.1"
                     /translation="MNFDQTYKKELSFQTDRRRASVELIKYISDLWYEHSIELVLFRN
                     QLLDRNVSEILNLHEYAGAFVGKSISIFESVDIAKAILQLNLPAAKIDIGKLTHEFQL
                     SSHTDQSCVDFVSQKLKGAKKQKSIVPQDVVLYGFGRIGRLVARELMTRTGKGNMMRL
                     RAIVTRGKMDQNTLEKRASLLQYDSVHGDFPGTVAVDLKNNALVINGTTVHMISANGP
                     EEIDYTQYGIKNALVIDNTGAFRDHEALSRHLTSKGATRVLLTAPGKGIPNIVYGVNH
                     LDHSPKNTPIVSAASCTTNAITPVLKVVDDHLGVISGHLETIHAYTNDQNLVDNMHNK
                     YRRGRAAGLNMVITETGAGQAVSRALPHFDGKLTSNAIRVPVPNGSLAILNLNLEKGT
                     SPEALNELIKKNALEGPLVEQIKYSLNNELVSSDIIGSSAPSIFDSHATIVRPDGKNV
                     ILYVWYDNEYGYSHQVIRLARYITEARRFTYY"
     gene            complement(10461..11873)
                     /locus_tag="DHV98_07515"
     CDS             complement(10461..11873)
                     /locus_tag="DHV98_07515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HCK06190.1"
                     /translation="MKRRSFIQKSAAASAAFTIVPSFVLGKAHVAPSDTLYIGAVGVG
                     GRGESVVRELYETGRVKFVALCDVDDKRAKNSYEAHPEAKRYRDFRHLYDNHLGEMDA
                     VMVATPDHTHATIALPFMREKKHAYVEKPLTHNINEARLMAEVAAQMGIVTQMGNQGS
                     SGDGIRTAQEWIDAGVIGKVHRVDCWTNRPVWPQGFKHITTADPIPETLDWDLWLGPA
                     AMRPYNENYLPFKWRGFWDFGTGSMGDMGCHIMETPFKILGLKFPYEAEASCTTIWSN
                     DFVEANYPEACPPSSIVRLKFKNNQQDDISLNWYDGGIMPDLPPELKDGEMPGDVSGG
                     SIFHGSDGIMVTDTYSRNPRLLPSERMLDFVAPEQRLTRVTTTHAGNFVEACLNGGET
                     SSPFSYGGPLTEAVLMGNLAIKGFQYKVLKEGKGPNDWSPYNYPGRKTILWDGEAMRV
                     TNWDDANKWVKGNYREGWAL"
     gene            12059..12751
                     /locus_tag="DHV98_07520"
     CDS             12059..12751
                     /locus_tag="DHV98_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008991463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HCK06191.1"
                     /translation="MRLDIITVLPELMRSPFEASILKRAIDKGLVEIHFHNLRDYSTN
                     TYKQIDDYQFGGGAGMVMMIEPIDQCISGLKKEREYDEIIYMTPDGSRFEQKTANELS
                     LKKNLIILCGHYKGVDQRVRDHFITREISVGDFVLSGGELAASVVCDAIIRLIPGVLS
                     NETSALTDSFQDDLLAPPIYTRPAQYKGWEVPQILLSGDSKKIDQWREDQAIERTKTR
                     RPDLWSKHQSEE"
     gene            12946..>13260
                     /locus_tag="DHV98_07525"
     CDS             12946..>13260
                     /locus_tag="DHV98_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010227735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HCK06192.1"
                     /translation="MESLIKFVQDEFVTKKEFPEFSAGDTITVYYEIREGEKTRTQFF
                     RGVVIQVKGTGSSKTFTIRKMSGTIGVERIFPINLPALQKIEVNKRGSVRRKRIYCFR
                     ELT"
BASE COUNT         3802 a         2908 c         2665 g         3481 t
ORIGIN      
        1 ctgaagcaca aaagccctga gctaaaaaac ccttttgtga ttcctgggat acgcaatgtg
       61 aaaattgaat ctcagctcaa tccaaattat agttttgaga atttcttgga aggggactct
      121 aaccgactgg ctcggtctgc aggttatgcc gtggcaaaca aaccaggagg cacttctttc
      181 aacccattac ttattttcgg aggtgtaggt cttggaaaaa cccatttggc ccacgcgatt
      241 ggtgtagaaa tcaaggaaaa atatcctgag aagacggtat tgtatatctc ggcagaaaaa
      301 tttacccagc agtacattga gtcggtaaaa aagaacaacc gaaacgactt tatccacttc
      361 tatcagatta ttgatgtctt gatcgttgat gacattcaat tattgtcggg aaaagcggga
      421 acacaagacg ttttcttcca tattttcaat catttacatc annnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnatt ttcaatcatt tacatcaaaa cgggaagcaa gttatcctaa caagtgataa
      661 ggctcctgtg gacatgatgg atattgagca gcgcctgctt tcaaggttta aatgggggct
      721 ttctgcagag ctcaatcatc ccgactacga aactcgtgtg gccataatta aaaataaact
      781 ctatcgcgat ggtgttgaaa tgcctgaaga gattattgag ttcttggcca acaatatcaa
      841 aacaaatatc cgagaactcg agggcgcgat tatttcgctc atagcccact cttcatttaa
      901 ccgaagagag attaccatcg acctggctaa gaaaatcgtt gataattacg tcaagcatac
      961 caaacgcgag gtttctatag attatattca aaaagtagtc agcgagtatt tccaaatgga
     1021 tgtggatacg ttacagtcaa aaaccagaaa acgacatatc gttcaggcgc gacaattggc
     1081 gatgttcttt gccaaaaagt tcaccaaagc ctctctggcc tccattgggt ctcaaattgg
     1141 ccaaagggat catgccacag tgctccacgc ctgcaagacg gttgacaatc tatccagcac
     1201 agataaacag tttcgaaaat acgtcgaaga cttgaataaa aaattaaccc tataaatccc
     1261 gagtcttatc gggattttcc tttttcatga aaaagacaaa aattttgatg gtgtgccttg
     1321 ggaatatttg tcgctcaccc ttggctgagg gaattcttca ggacaaatta gatccagcac
     1381 gattttccgt gtcatccgcg ggcacaggaa gctggcacgt gggcaatccg cctgatccgc
     1441 gtagcgtaga cattgctcaa aagcgaggct tggacatcag tcgccaaaga gcccaacagt
     1501 tccaaggttc ttttttcaat gagtatgatc ttatttatgc tatggaccaa agtaatttaa
     1561 gcgatctcaa atccttagcc aaaacccctg agcaacttca taaactaagt ctattactcg
     1621 atgctgtttt tcctggagaa ggcgtggatg ttcctgatcc ctattacgga ggagcatccg
     1681 gtttttcaga agtctatgat ctaattgatc gtgcttgcat tgccattgcc cataagatcg
     1741 accaaaaaaa atgattaact tcaccaagac accagtctgg tcaaggattt gtattttatc
     1801 agacttttaa tttttaaatc atgcgcctaa tataccgttt agcccttctc acaattattg
     1861 gaaacttatc cctaagtgct caatctttta gccttgcccc cttggccaat ggctttaacg
     1921 ccccactaaa tattcagcac gcacaagacg agcggttatt tattgtggag caaggggggc
     1981 gaattaaaat attaaaccct gatggaagtg tagaatcgac cccgttttta aacctaagca
     2041 gctcaatatc aagcggtggt gagcgcggcc ttttaggcct tgccttccat ccaaattaca
     2101 cggacaatgg ttattttttt gtgaattata ccaaccccaa tgggaatacg caaatatcgc
     2161 gctttagtgt ggacccgttg aatccgaatt tagccgatcc gacttccgaa ttgccgttac
     2221 tcactattac acagccttat gccaaccata atggcggttg cattgctttt ggtcctgatg
     2281 gctatttata tatcggcatg ggtgatggag gcagtggtgg tgaccctcaa aactacgcgc
     2341 aaaatacaag tagtttattg gggaaattat tgcgtattga tattgacaat ccttctggca
     2401 acttaaatta tagtattcct gaggacaacc cctattttgg cagtacgacc caggcacaag
     2461 aaatttgggc ctacggttta cgcaatccat ggaaatttag tttcgataga gataacggtg
     2521 atttatggat tgccgatgtt ggacaaaatg cttttgaaga aattaataaa gtagcctaca
     2581 ctcaggcgga cattaattac ggttggcgct gttatgaagg cgatcagagc tataacacaa
     2641 gtaattgtgt cgatccttca ggcatggagt ttcctttggc ggtttatcct catagtatcg
     2701 gaagctcgat cactggcggg tatgtttatc ggggtcctga aaatagcccg ctacacggcc
     2761 attatctttt tgcggacttc gtttctggtt atttaggggt cttagatcct gcaagcggta
     2821 atgtcgtttt tgaccaaaat ttgaatcaaa actgggcttc ttttggagaa ggaattgacg
     2881 gtagcctcta cctaacggcc tttaatgggg ttgtttataa gatcgagcca gagatcgttt
     2941 tagggcaacc tgaccccgta aaaatctttc aaatatcccc aaatcccgcg caagatcaga
     3001 cgttgatcaa taccacaaac attagtggat acgtgattta tgatctcaaa gggcaaaaaa
     3061 taacctcggc cgaaattaac caagaccgca cggtactgag taccgcggac tggccctcag
     3121 gactttactt aattcaagcc aggcaccgtg acggccacac aagcatacaa aaactcatgg
     3181 tgcaccatta atttatgaaa aaagggcaaa tttttttaat cccctgtcnn nnnnnnnnnn
     3241 ttgggagagc acgcccccat gagtgttctt cctttaactg tgcttaaggt gattgaagcc
     3301 acgaaccatt atgtggttga acatgaaaaa aatgcgcgtc gctttataaa atcgatttac
     3361 cctcaaaaaa atcaagccga tcttaagctg tctaccataa ataagtttac cgatcccctt
     3421 gaaattcctg agctcattcg accgtgtctc gagggctttg atttgggcat tatcagtgat
     3481 gctggttgtc ccggtgtcgc ggatcccggt gcagaagtta ttcatatggc ccataaaaat
     3541 ggcataaaag tagtgccttt ggtcgggccg tcgtctattt tacttgcgct tatggnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnttaaat
     3721 ggccaaaaat ttgcctttca cggctattta cctattgata aagatgagcg caaacaaagt
     3781 ctaaaacaat tagaaaagca atctcagcaa gaagggcaaa cccaaatttt tattgaaacg
     3841 ccctaccgca acaatcagct cctcgaggcc atgactacgc acctcaaagc ggatactcag
     3901 ctctgtgtcg cttgtaattt aacgttacaa gatgagttta tcttatctaa agaaattcgc
     3961 caatggcaac ctgcggcaca tgacttacac aaaaggcctt gcatcttcct tttcctggcc
     4021 aaataataaa tgaaccgatc attactatag atcaatccac ttttcttgtg caggaatagc
     4081 cgctgtattg taatgcgcaa agtctcttaa gtaggcttct atactggtcc caaaggcatc
     4141 ttcaaaaaca aaatttccgc cgctacgcaa gtattttttg acgttgcctg ctccagccaa
     4201 atgagccgcc gctaaaattc cggactcagt aatttcaata ccttttattt gtcgtccgac
     4261 gctgcgtttt aaatcttttc ttaaaatcca cttgttcctt gcggtatacc agaaaaaagc
     4321 ccgctcttgc aactcagatt gcgccaaaaa tctctgctta tcatgaattc ccaatagaga
     4381 aagcgtattc atatgaaact gatatttacc caaataacca aggcgattaa tcgcttgata
     4441 atcaccactt gattctttga aggccaaagc ctctttgaac gcgacaaagg aattgtccaa
     4501 aacgggagca tgatttaggt cctttggggc actattggga acatggacag gaacatgata
     4561 gcacagtgag gcatcatcaa aatcgtcaaa tgttctgtcc gactgatcga aacgagaaac
     4621 tccaacaaaa cccatcagac tggcaaatat accaacgagc cagtgggacg ctagcccttt
     4681 atgtctaagg tcaatcataa cgtaggttaa ttaagattgg gccgcaaaat taagtaaaat
     4741 tttaattatc tgattatcaa ttatttaaac ctaaattttt tgaagaaatt agccgtcggt
     4801 aaaatctgcc gctccgggcc gattcaatca attatcgctt aatgccttgg gcactgatcc
     4861 atttgatgta atcctttcgt tttgcgttgt gttcactcaa ggatttggag aagctatggt
     4921 atccggggcg ctcaggatct gcgacaaaat aataatagcc atgaggttcc gcattaagta
     4981 cggcatcaat tgaagaaata tcgggcatgg taataggccc tggcggtaag cctttgtatt
     5041 tataagtgtt atagggagaa tctaaggata aatctttata gagtacacga cggataactt
     5101 gttgaaaatc ttnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnng attcgattta gatagactcc agcgatcgtc gggcgttctg
     5281 aaacctttac tgattctttt tgcacgactg ccgccagggc tgaaacctca agaggactta
     5341 gtccaatggc tttggccttt tttagtctct tttcattcca aaaggcttta tactctccca
     5401 gcatcctttg tctaaatcgt tcagcatcgg tattccaata tatttcatag gtattgggaa
     5461 tgaacaaact aaggagttgc tcctgagcta ccccagccga ctcaagaaac tcaggatcct
     5521 taaaagcctc aagcaaggtt agactgtcag gttcaatctg tcgcgccagg gccccagcta
     5581 agtcctcaat acgctcttga ttgttaaact tgagtaatat tggctcattc ttactgcgca
     5641 gtacgtcgat aatttctctg ttattcatcc cctgttctaa cacatatcgt cccgccttag
     5701 gaaacgcgtt gagtcttttg acacgagcca ttaacttaaa atcagacata cgggtgatat
     5761 acggccctac agcacttaaa acggcatcaa aatctggatt cgtaccaata aacacatcca
     5821 ctttggcctc attcaaggat aggtttgcgg cccaaatcaa acgataagta tagcgtcccg
     5881 taaggacaat aactatggtg aataggaccc ctaaaacaac gccttttaac ttcatctttt
     5941 agtgcgaaat ttttgataga ctaacatatc ctgaaattca cccctgagat tgcaccacca
     6001 acctttgagt tgagctccct cttcaaagga cagcgaagaa aacaagccaa tactcgcctt
     6061 attagcggga gcaatgagcg aatagatttg atgacaatca agggactcaa aggcataatc
     6121 tataaataat aaggctgctt cccgccctaa accttgttgt cgaaatgatg gctcagtaat
     6181 taaaattccc agagcaaccc gtttgttttt tgagtcaaaa tcgaatagat cgataagtcc
     6241 aatgggctga ttcgttaatt tgtggtggat gactaatctg agctgttgtg tctgataaat
     6301 ggactggtgg gcttgatcga tataagcctt caggagatgg cgactgtagg gcggatgttg
     6361 atctccataa agagcaaatg ccggatcatt ttcagtacgg tatatataat ccagatcctc
     6421 aggttctaga gcccgcaaaa aaatatttgt gccaattaaa ttcactgaaa ttctccttta
     6481 aaaaccttca ttacgggacc ggttagccag atatttcgat aggcagaatc ttcacgaaca
     6541 caagataccg aaaggatacc acccaaagtc tcaagagcta ttgacccctg gttaacggct
     6601 cctgtttcca taagcgcaat cgccgcagct gttgcccctg tcccacagga aagcgtttcg
     6661 gcctcaacgc cccgctcata ggttcgcatg ctaaatccat cattagtttt acagacaaaa
     6721 ttcacattaa cgcccccggg ctcgaattca tttctcaatt tccgaccaag tgtggtgaca
     6781 tccaaatctt ttatgttatc gcgaaaacaa atcaaatgcg gagatcccgt atctacaaat
     6841 agtccttgtt tgaccgtcct aatttcaaat acatcgccca tggaaatact gatttggggg
     6901 tgcgccacac gaaattgatg caggccatcc ggaccttcaa aatgaccttg attcgggaca
     6961 tatcccaaat tatgagccaa atgggtcaca caacgtccgc cattaccaca catactgccc
     7021 ttatgcccat cggcattaaa ataaaccatt ttaaaatctg cttgagttga ggattcaagc
     7081 agaatcaacc cgtcagcacc aatgccaaag cggcgatgac ataattttga aattcgctca
     7141 gcactggggt tgctaaagtc cccttttgta ttgtccacca gtataaaatc attaccggtc
     7201 ccgtggtatt tataaaaatg ccctgccatg attacaaatg tagtaaaacc aatgcctcta
     7261 gagccttttc aaactttgtt aaatcgtcgt taattaagaa atttgttaac atccaaacgt
     7321 tttatctgtc gttaatttta aaacaaaaaa cttaaaattt atgaagcgat ttttttcaac
     7381 cctaggaatt agcgtgatca ccgcggtcac cagtcttgct gtttatgatc attatcaaga
     7441 gaaaaatcaa tcaaatcccg cagcgagcac catgcccatg aatatggtgc aaaccaattt
     7501 tagctccatc aactccgaag ttttagatac tgattttacg cttgccgccg aaaatacggt
     7561 caatgccgtc gtccacgtga aaaatacctc aatatcaaga caaccgggca atatgatgga
     7621 attgtttttt ggtggcggtg ccccaagggc catgatcggc accggtagtg gggtcatcat
     7681 aagtcctgac ggctatatta tttcgaacaa tcatgttatt gaacgggcca ctgatttaga
     7741 agtgactcta aacgacaaca gaatttacaa cgctgaagtc atcggtaccg atccaaaaac
     7801 ggatatcgcc ctactcaaaa tagaatccga cgaccccctc ccctatatcc cttttgcaga
     7861 ctctgacgcc gttaagattg gacaatgggt tttggctgtg ggcaacccct ttaacttaac
     7921 ctcaacggtt accgccggca tcattagcgc caaagcacgc gaccttaatg aatttgacaa
     7981 taatccacag tcttttatac aaaccgatgc tgcagtaaat cgcggaaata gcggtggcgc
     8041 actcgtcaat acaaacggtg agcttgtggg catcaatacc gccattacca gtgaaacggg
     8101 atcctatgtc gggtattctt ttgccgtacc gtcgaatact gcaagaaaag ttattgaaga
     8161 tctattggaa tacggaaacg ttcagcgtgg atttctcggt attcaaggca gtggattaga
     8221 tgccaagcgg gcccaaatgc tcggcattga agatacgcaa ggggtctacg tggccagtgt
     8281 agaatcagac agcggggcag aacaagccgg cctggagcaa ggagatgtaa tcaaaaatat
     8341 cgatggcatc agtatttata aattttcaga tctcaccgga tacctcaacg ccaaaagacc
     8401 caatgacatc gtttcactca ccttaaatag aaaaggcaaa gaaatggtca aaaacgtagt
     8461 cctgcgcaag atcgacacct acacgatagc agatttaggc ttaaccgtaa aaaacacctc
     8521 aaaaatgcag cgggagaaac gctctgttga tcacggagtc atcgtgacaa aagtcaacaa
     8581 ccaagaactc ttgagtatgg ggcttgatgg cgccattatc acccatgtaa atgatgtggc
     8641 cataaatact attgacgatc taaaaaatac agtggataac aaatttggcg gcccgatgaa
     8701 attaactttt tatgaccgcc atggagaaaa aagcgcgata ctgtttcgat aatgtacaga
     8761 gatccgttgg ctttagtggc taaagcgtcc ttttagaaca gatgattcgc ccgattattt
     8821 ttcgatacgg cgaaatctag atcagataaa cactggagtt ggctttgacc atcagctttg
     8881 gtgttttttt tagtttttat tttacgaaaa cgttttagtt gtctaatttt gcccccaaaa
     8941 taaacacaac caaagcccat tttttcatga attttgatca gacctacaaa aaagaacttt
     9001 cctttcaaac cgaccgaaga cgcgctagtg ttgaactcat taaatacatt agcgatctat
     9061 ggtacgagca ttccattgaa cttgttttgt tcagaaatca acttttggat cgcaacgtga
     9121 gtgaaattct caacctacac gagtatgctg gggcctttgt gggtaaatca atttctattt
     9181 ttgaaagcgt cgatattgcc aaggccattt tacaactaaa tcttcccgcg gctaaaatcg
     9241 atattggtaa gctcacgcac gaatttcaac tcagcagtca tacagaccaa agttgcgttg
     9301 actttgtcag tcaaaaacta aaaggggcga aaaaacaaaa gtctattgta ccccaagatg
     9361 tggtcctcta tggttttggg cgcattggtc gcctggtcgc tagagaacta atgacccgta
     9421 ccggaaaggg caatatgatg cgcttgcgtg ctattgttac acgcggtaaa atggatcaaa
     9481 atacccttga aaaaagagcg tcgctgctgc aatacgattc tgtccatggg gattttccag
     9541 gaactgtcgc tgtggatctt aaaaacaatg ccttggtcat taacggcacg acggtccata
     9601 tgatttcggc caatggccct gaagaaatag attatacaca atacggcata aaaaatgcct
     9661 tggtcattga caataccggt gcctttcgcg atcatgaggc gctcagtcgc catttaacct
     9721 caaaaggtgc gacgcgcgtc ttgctcaccg cgccaggaaa aggcatccca aacatcgtct
     9781 atggggtaaa ccatttggac cacagcccta aaaatacccc gatagtttca gcagcatcct
     9841 gcaccaccaa tgccattacc ccagttttaa aagtcgtaga cgatcatctt ggggtcatta
     9901 gtggacatct agaaacaata catgcctata ccaatgatca aaatttggtg gacaatatgc
     9961 acaacaaata ccgtcgtgga cgtgcggccg gactgaatat ggttattacc gaaaccggag
    10021 cgggtcaggc ggtcagtcgt gccctacccc attttgatgg caagcttact tcaaatgcga
    10081 tacgcgtgcc cgtgccaaac ggatctctgg ccattctcaa tttaaatctt gaaaaaggaa
    10141 caagcccaga ggccctgaat gaattgatca aaaaaaatgc cttagaaggt ccgcttgtcg
    10201 aacaaatcaa atattcttta aacaatgaac tcgtctcgag cgacattatc ggttcctccg
    10261 cgccctctat ttttgacagc cacgccacta ttgttcgccc tgatggcaaa aatgtcatcc
    10321 tctatgtttg gtacgacaat gaatacggct atagccatca agtgattcgc ttagcccgtt
    10381 atattaccga ggcacgaaga tttacttatt actaatcgac aaagccggta ttgtctggtc
    10441 ggatctatgg gattatcgag ttaaagcgcc cagccttctc ggtaatttcc tttgacccac
    10501 ttattggcgt catcccaatt cgttacacgc attgcctctc catcccataa gatggtttta
    10561 cgtcctggat agttgtaagg ggaccaatcg tttggacctt taccctcttt gaggacttta
    10621 tactggaagc ctttgatggc taaattaccc ataagcacag cctcagtaag cgggccgccg
    10681 taagagaacg gagaggacgt ttcaccgccg tttaagcagg cctcaacaaa gttaccggca
    10741 tgggtcgtgg tcacccgggt taagcgttgc tcgggcgcaa caaaatctaa catgcgctct
    10801 gaaggcagta agcgcggatt gcgagaatag gtatcggtaa ccataatgcc gtcagaacca
    10861 tggaaaatac ttcctccact gacatcacct ggcatctcac cgtctttgag ttctggggga
    10921 agatcaggca taattccgcc atcataccag tttaaactga tgtcgtcttg ttggttgttc
    10981 ttaaatttta agcggacaat agatgaaggg gggcatgcct cggggtaatt cgcctcaaca
    11041 aagtcattag accaaatggt ggtgcaactc gcctctgcct cataggggaa ttttaatccc
    11101 agtattttaa atggagtctc cataatatga cagcccatgt ctcccattga tccggtaccg
    11161 aagtcccaaa atccgcgcca cttaaagggc aaatagtttt cattataggg acgcatcgcg
    11221 gctggaccca gccacagatc ccagtctaag gtctctggaa tagggtctgc agtggtgatg
    11281 tgtttaaatc cttgtggcca aaccgggcga ttggtccagc aatccacacg atgtactttg
    11341 cctatgacgc cggcatcaat ccattcttga gccgttctaa ttccgtctcc cgaagatcct
    11401 tgatttccca tttgggtaac aatacccatt tgagccgcta cctcagccat gagtctggcc
    11461 tcattaatat tatgagtcaa aggtttttcc acataggcat gttttttctc ccgcatgaag
    11521 ggcaaagcta tcgtcgcatg agtatgatcg ggcgtagcga ccatgaccgc gtccatttct
    11581 cctagatgat tgtcatataa atgacggaag tctctataac gtttggcctc tggatgggct
    11641 tcatatgaat tttttgcccg tttgtcatca acatcacaca aggcgacaaa tttaactcgg
    11701 cctgtttcat agagttctct aaccacactc tcaccgcgtc ctccaacacc aacggcacca
    11761 atatataagg tgtcactggg ggctacgtga gcctttccaa ggacaaaact cggaacaata
    11821 gtaaaggccg cagaggctgc tgcagatttc tgaataaaag atcttctttt catggagtgc
    11881 gtcgtttttg ttggtcgatg aactaaagat aataaacttc attaaaaatt caggatcccc
    11941 ccgataaaaa gcatatatcc caatgcaagg acgctattgc gcatttattt tctaagtttg
    12001 caacgccaac atgggaattg acaaaatacc aattggttaa attaagagca ccactgaaat
    12061 gcgcctagat atcattaccg tattgcctga actcatgcgc agtcctttcg aagcgtcgat
    12121 cctcaaacgc gctattgaca aaggactcgt agaaattcat tttcacaacc ttcgggatta
    12181 cagcaccaat acctacaaac aaattgacga ctatcaattt ggggggggcg ctggaatggt
    12241 tatgatgatt gagcccatag accaatgcat tagtggactg aaaaaagagc gcgaatatga
    12301 cgaaatcatt tatatgacgc ccgatggttc tcgctttgag caaaaaacgg ccaatgagct
    12361 ttcattaaaa aagaatctaa tcatcctatg cggccactat aagggtgttg accaaagggt
    12421 tcgcgatcat tttattaccc gtgaaatttc agttggagat tttgtgctca gcggtggcga
    12481 acttgctgca agcgtggttt gtgatgcgat aatacgcctt attcctgggg tactcagcaa
    12541 tgagaccagt gctttgacgg attcatttca agatgattta ctcgcgcccc ctatttatac
    12601 gcgaccggcc caatacaagg gttgggaggt tcctcaaata ctgctaagcg gagacagtaa
    12661 aaaaattgac caatggcgtg aagaccaagc catagagcga accaaaacaa gacggcccga
    12721 tctttggtca aaacatcaat cggaagaata aacaatagag atcttcccta acgccccgat
    12781 caaaggcact cataaaaaag ttaaagaccc attcgggcgt taaaatccaa ttattttaat
    12841 caaagccttg ccggacatgc atttttaact atttttgccc acgatttgcg ataacctctg
    12901 gcgatagacg tgcatgttgc gcaaactaat caagatgcat aaaacatgga atctttaatc
    12961 aaatttgttc aagacgaatt cgtaacgaaa aaggaatttc ccgagttctc ggcaggagat
    13021 accattacgg tttactacga aatccgtgaa ggtgaaaaaa cgcgtactca gtttttccgc
    13081 ggagtcgtaa ttcaggtaaa aggaacagga agttcaaaaa cttttaccat cagaaaaatg
    13141 tctggtacta ttggtgtaga acgtattttc ccaattaatt tgccggcatt acaaaaaatt
    13201 gaagtcaaca aacgcggtag tgtgcgcaga aaacgtattt actgcttcag agaattgacc
//
LOCUS       DPUP01000202           12935 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1414,
            whole genome shotgun sequence.
ACCESSION   DPUP01000202 DPUP01000000
VERSION     DPUP01000202.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12935)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12935)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12935
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..201
                     /locus_tag="DHV98_07530"
     CDS             <1..201
                     /locus_tag="DHV98_07530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HCK06193.1"
                     /translation="VGNNVSHAMNKTKRKFNANLVKKRFYIPEEDKWITLKVSTSALK
                     TINKKGISAVLKEARENGFLNK"
     gene            230..412
                     /gene="rpmG"
                     /locus_tag="DHV98_07535"
     CDS             230..412
                     /gene="rpmG"
                     /locus_tag="DHV98_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011963553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HCK06194.1"
                     /translation="MAKKGNRVQVILECTEHKESGLPGTSRYITTKNKKNTPDRMELK
                     KFNPILKRMTVHKEIK"
     gene            421..573
                     /locus_tag="DHV98_07540"
     CDS             421..573
                     /locus_tag="DHV98_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4295 domain-containing protein"
                     /protein_id="HCK06195.1"
                     /translation="MAKKSVASLQTGSKRLTKAIKMVKSPKTGAYTFVEAIMAPELVN
                     EWMSKQ"
     gene            707..1672
                     /locus_tag="DHV98_07545"
     CDS             707..1672
                     /locus_tag="DHV98_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HCK06196.1"
                     /translation="MGLFKQLFNKEKKAKLDEGLAPSKKSFFDKLSKAVVGKSKVDDS
                     VLDELEEVLIASDVGVATTLKIIQRIEQRVARDKYLGTDELQFILREEIAALLQNQER
                     QADGPAEVFSDPGKKPFVIMVVGVNGVGKTTTIGKLAAQYKAQGLKVVLGAADTFRAA
                     AIDQLQIWADRTQTDIVKQKMGSDPASVAFETLTYAQQQGADVVLVDTAGRLHNKVNL
                     MNELSKIKRVMDRVVADAPHEVMLVLDGSTGQNAFEQAKQFTAATEVTALAITKLDGT
                     AKGGVVIGISDQFNIPVRYIGVGEGVEDLQVFDKKEFVDSFFKIN"
     gene            1690..2994
                     /gene="rimO"
                     /locus_tag="DHV98_07550"
     CDS             1690..2994
                     /gene="rimO"
                     /locus_tag="DHV98_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HCK06197.1"
                     /translation="MRTKSTKKHTINVVTLGCSKNVYDSEVLMGQLRANNKDVVHEQE
                     GEVVVINTCGFIDNAKEESVNTILSYVQKKQEGLVEKVFVTGCLSERYKPDLIKEIPD
                     VDQYFGTTELPSLLAALGADYKHELIGERLTTTPKNYAYLKIAEGCDRPCSFCAIPLM
                     RGKHKSKPIEDLVIEATKLAADGVKELILIAQDLTYYGLDLYKKRALKELLEALVKVE
                     GIEWIRLHYAFPSGFPLEVLDLMRQESKICNYIDIPLQHISDPILKSMRRGTTQEKTN
                     ALIREFRERVPGMAIRTTLIVGYPGETEADFNLLKQWVKDTKFDRLGCFTYSHEENTH
                     AFNLEDDVPEEVKMERANQIMALQSDISWALNQEKIGKQYRVVIDRKEGEYYVGRTEY
                     DSPDVDNEVLIAAQDGYLRQGDFYSVRITDAEDFDLYAEVLP"
     gene            2996..4285
                     /locus_tag="DHV98_07555"
     CDS             2996..4285
                     /locus_tag="DHV98_07555"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06198.1"
                     /translation="MSFRNNFFLGLMLVGFSCQGPNRQSGPAEVVSSWESNIAVPGPW
                     QSHENVTTPNLFSDGTNLYLTWIKRDSVLSTLYYSRLGQNTWSDPQRIAQGEDWFVNW
                     ADFPQFSANKGTLMATFLKKSDSGTYTYDIYYTLSQTDKTWGLPQKLHRDSAKAEHGF
                     VSIAPTKKGFVVSWLDGRNTLVSNNQSSGGSSAGHQGHAAGAMSIRSALVDFEGTLSP
                     ESLIDERVCDCCQTAIAVDERGYTLVAYRDRSAEEIRDISLKKGSPESGWSNPVSTKD
                     HWGIAGCPVNGPSIDVFRNHLALAWFTAGQDKPRVQVAFSGTDTLQLTPGMRMDSGEA
                     VGRVDVVQLSEDSAVVSWVEPQGLEDYVRAQWVNDRGQKGPLRTVSQTESSRASGFPR
                     LVRHGDRFYLATTRGVPGGASKITLTSWPLSDMLPSD"
     gene            4289..5554
                     /locus_tag="DHV98_07560"
     CDS             4289..5554
                     /locus_tag="DHV98_07560"
                     /inference="COORDINATES: protein motif:HMM:PF13692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06199.1"
                     /translation="MTAPSRARILFIGHQWPEPKLTAAGWRTCELIQGFINQGNAVDF
                     ACVVNPVLQVEDAVLSGVTCHMITLNDDGFDLLLQEIQPQMVVFDRFITEEQYGWRVR
                     LQCPDAVKVLDTQDLHFLRKTRAAYIDKYPSAFDASGCPTQFFYGPLAMRELASIWRC
                     DQTLLISEFEYGFLTDHFSIPETLLTYLPLGSSVAPQADRPWKNRQHFLWVGNRKQPP
                     NHDSLMYLGQRLWPSIHRELPEAELHVIGANKNTLQTQMIAQTKGMVEMDWVDDLQGL
                     MTQYRVNLAPVRFGAGLKGKIISALSCGLVTLTSPIGAEGLDCKQNNGVNVALDPQAF
                     IEASVRLYREKEHWQRANESGLSLIQARFSIGHYMGQLMEDLNRIKDTLTTHRQQHFM
                     GQILQHQSLNASKYMGRWLTLKNAQINPK"
     gene            complement(5541..8018)
                     /locus_tag="DHV98_07565"
     CDS             complement(5541..8018)
                     /locus_tag="DHV98_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc carboxypeptidase"
                     /protein_id="HCK06200.1"
                     /translation="MKRILIALTLFCTQLVSSQILSPEAFLGYPIGTKYSRHHQMVSY
                     FEHLANASDWISFHQYGETNERRSLNYAIITTPENQARLEEIRQNNLRQIGMLPGNSS
                     PDVAIVWLSYNVHGNEASSMEAAMQTAYELINGSSPWLKNTVVIMDPCVNPDGRDRYA
                     NWYNQVGTSPYNPLQAADEHNEPWPGGRPNHYLFDLNRDWAWAKQVESQQRLPLYHKW
                     MPHVHVDFHEQGINEPYYFAPAAVPYHEVITPWQKQFQVEIGQNNAKYFDQEGWLYFT
                     RQFFDLLYPSYGDTYPTYLGAIGMTYEQAGNGRAGLGILNDEGVELTLVDRAAHHTTT
                     GLSTVEISSKNALKLNKEFKSYFRTPQPLQNYILQGNSDKIQALTQLLDRHEIQYSFA
                     QSTVVKGWDYSTXQKNTQRNVADALVLSTDQPQGAMVRVLFEAEAALEDPLTYDITAW
                     SLPYAFGLNCMVTDKPLETSQNNPYNGRFQLPAEPEVVAGFIAPWGDLADATFLTDLL
                     KKGLRVRFSEKPLSFGGKQFPRGSLVITKGDNIKRKDFNPLIRKLASTHQRQITALSS
                     GFSDNGVDLGSTDIKLINPHRIGILKGDGVSSLSYGTIWHFMEQELKYPFTPINTANF
                     SAKTLSQFDVLVMPSGYYSNLRSEEQLNGLKDWVRSGGKLIAIDQAVNVFADRDGFGL
                     KSIEPESSDKSNMIPYGDRERHSVKDLITGSIYKVHLDTTHPLAFGYSELYFSLKQDD
                     DAYLKLERGYNVGYFDGPAESYSGFSGSDAKKKLSDSFVFGEYPLGQGSMVYLTDDIL
                     FGSFWENGKLFFVNSLFMVDANVFILD"
     gene            8108..9793
                     /gene="bshC"
                     /locus_tag="DHV98_07570"
     CDS             8108..9793
                     /gene="bshC"
                     /locus_tag="DHV98_07570"
                     /inference="COORDINATES: protein motif:HMM:PF10079.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HCK06201.1"
                     /translation="MPNTTKHRIFVMALARLAQVIPVIMEKQLLTYKSTRQFSDLVLD
                     YLEGSDQLRPFFNRAPDLEQVKAQIQEKSQSFPPSSRAKLVQALIGQYQDFSLNESFD
                     QRIKLAIQALSGEKTFTVTTGHQLNLFTGPLYFLYKIFGAINLAEQYTAQNPGYRFLP
                     VFWMASEDHDFEEIAHFRTGAHKINWPKQGAGPVGRLMCTDLDEVLNTLDKLWGGTVI
                     GRSMLNLFKSVYTPELTLAQATRKLVHELFKDYDLIIIDGDDAVLKSEFTSIMRHELT
                     ENGCSQAIEKTTQALTLKGYHKQVHPREINLFYCDSGLRERIIATESGFAIDQTEMRF
                     TQGELLDLLERRPELFSPNALLRPLYQERVLPNLAYIGGGAEVAYWAQLKDCFATNAL
                     TYPMVYLRNSISLIPAKLISKLRRINLEISDLFLPMDELSRRYVARNTGLEIDFSAQI
                     THLKKQFEQLYLMAEQTDASFMGAVGAQEKKQIKGLERLQQRLMRAEKRKHAQDIQRL
                     AKMREWLFPEGTLQERKENMSWGLTQIGPEFLALLKNHIDPSDHRFTLLIYNS"
     gene            9836..>10682
                     /locus_tag="DHV98_07575"
     CDS             9836..>10682
                     /locus_tag="DHV98_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012024443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase (glutamine-hydrolyzing)"
                     /protein_id="HCK06202.1"
                     /translation="MQNNVLILDFGSQYTQLIARRVRELNIYCEIHPYHHLPEDLSGF
                     KAVILSGSPFSVRADDAPHPDLSQIKGHLPLLGVCYGAQYMAHFNGGLVRESNIREYG
                     RAKLEVKEEDSPLFKAIPQGSQVWMSHSDTIAELPTGGVRLASTEDVANAAYKIEGEE
                     TYAIQFHPEVYHSTHGKQLLENFLIDVAGVEPTWTPAAFVDTTVQELKDKLGEDRVVL
                     GLSGGVDSTVAAVLLHKAIGANLYCIFVNNGLLRKNEFQSVLDQYQHMGLNVKGVDAS
                     VRFLEA"
     assembly_gap    10683..10782
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <10783..11468
                     /locus_tag="DHV98_07580"
     CDS             <10783..11468
                     /locus_tag="DHV98_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012024443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GMP synthase (glutamine-hydrolyzing)"
                     /protein_id="HCK06203.1"
                     /translation="LKGEKDPETKRKAIGKVFIDVFDDEAHLVENVTWLAQGTIYPDV
                     IESVSVNGPSVTIKSHHNVGGLPDYMKLKIVEPLRMLFKDEVRRVGAQMGIDPNLLGR
                     HPFPGPGLAIRILGDITPEKVRILQEVDAIFIDGLRKWDLYDKVWQAGAILLPVQSVG
                     VMGDERTYENVVALRAVESTDGMTADWVNLPYAFLQETSNLIINRVKGVNRVVYDISS
                     KPPATIEWE"
     gene            11469..>12272
                     /locus_tag="DHV98_07585"
     CDS             11469..>12272
                     /locus_tag="DHV98_07585"
                     /inference="COORDINATES: protein motif:HMM:PF01476.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06204.1"
                     /translation="MIKRCIGVFGILFWTAIQGIVAQNSVLDVQIYHVQQGEELPQII
                     RKFKTCRAYLLALNPELKSTLAPDLSLIVPKASAMEKGDELSVDFVEHKVKRKETLFG
                     IAQSYGLSLSDVQAYNPEVTAESLNKGDRLKIFTACTIPSPEQVQLIRDEWTNKMVTW
                     HVVAVKETLWSLGHRYNMSMAELQELNPDLTQNLVVGQRLKVRGTALDSIGVGDPNFD
                     YYAVQPKEGFFRLRQKFGLTKEEIVALNPNADEGLKLGMVLRLPKAVMSY"
     assembly_gap    12273..12346
                     /estimated_length=74
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <12347..>12935
                     /locus_tag="DHV98_07590"
     CDS             <12347..>12935
                     /locus_tag="DHV98_07590"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06205.1"
                     /translation="TDSSAQRITLMLPLQLEGFIQDSLALNQQYVQGNRLLRIALDFY
                     TGVLMAQDYAKSYGLDVSLDVLDTQAKKSVVDSLLGVYDFSQSDMVIGPFLPANVLAV
                     AEHLKRSDLPVVSPLSRPNGPVPDNLVQTIPDAASMRRALMDYIKNNKQERKMLFVGD
                     ADAPGLAAMRGQWPKVKVLLPREQGYIDPDDILPQL"
BASE COUNT         3574 a         2697 c         3061 g         3427 t
ORIGIN      
        1 gttgggaaca atgtttctca cgccatgaac aaaaccaagc gtaaatttaa cgccaatttg
       61 gttaaaaaac gcttttatat tccagaagag gacaagtgga ttactttaaa agtttctact
      121 tcggccttga aaaccatcaa caaaaaagga atttctgcgg tgcttaaaga agcacgtgaa
      181 aacggttttc ttaataagta attggccaac catttaataa aataagatta tggcaaagaa
      241 aggcaataga gtacaggtaa ttttagagtg cacagagcat aaagaaagtg gtttgcctgg
      301 aacgtctaga tacatcacaa cgaagaataa gaaaaatact ccggaccgta tggaattgaa
      361 gaaattcaat cctattctaa aaagaatgac ggttcataaa gaaattaaat aagacgcgtc
      421 atggcaaaga aatcagttgc atcattacag accgggtcaa agcgtttgac caaagccatc
      481 aaaatggtta aatcaccaaa aaccggtgcc tacacttttg ttgaagctat tatggctcca
      541 gagttggtca acgagtggat gagcaaacaa taacgcattc aaaccgatac aggccacttt
      601 ttagtggcct ttttttttga cctcaagaca tttgcaaagt ctgtgaatcc cgcgtaattt
      661 tatccttaaa taacgccttg atcaaaagac gtttaaataa tcgaatatgg gactgttcaa
      721 acagctattc aacaaagaaa agaaagcaaa actcgatgag ggtttggccc catccaaaaa
      781 atcattcttt gacaagcttt ccaaagctgt tgtgggaaaa agcaaagttg acgactctgt
      841 acttgatgag ctcgaagagg tgttaattgc cagtgatgtc ggagtcgcga cgaccctaaa
      901 aattattcaa cgtattgaac aacgtgtggc gcgtgacaaa tatctgggca ccgatgaact
      961 ccaatttatt ttacgtgagg agatcgctgc tttattgcag aaccaagaac gccaagctga
     1021 tggaccggcc gaggtgtttt ctgacccagg gaaaaagcca tttgtcatta tggttgtggg
     1081 ggtgaatggt gttggaaaaa cgacaactat aggcaaatta gcggctcaat ataaggctca
     1141 aggccttaaa gttgttttgg gggcagccga tacatttaga gcagccgcta ttgatcaact
     1201 tcaaatttgg gcggaccgaa cccagaccga tattgtgaaa caaaaaatgg gaagtgaccc
     1261 tgcaagtgtt gcttttgaga ccttgaccta tgcccaacag caaggcgctg atgttgtttt
     1321 ggtagatacc gcaggacgtt tacacaacaa ggtaaatctc atgaatgagt tgtcaaagat
     1381 aaaaagagtg atggatcgcg tcgtggctga tgctcctcat gaggtcatgc ttgttttgga
     1441 tggttctacg ggacaaaacg cgtttgaaca agccaaacaa ttcactgcag caaccgaggt
     1501 tacggcctta gcgatcacca aactcgatgg aacggccaaa ggaggagtgg ttattggtat
     1561 cagcgatcag tttaatattc cagtacgcta tattggtgta ggagaaggtg ttgaagacct
     1621 tcaggttttc gataaaaaag aatttgttga ctcgtttttt aaaattaact gagggattca
     1681 gttcaaacta tgcgtactaa aagcacaaaa aagcacacca ttaatgtcgt tactctaggt
     1741 tgttccaaga atgtctacga tagtgaggtt ctcatggggc aactacgcgc caacaataag
     1801 gatgtagttc acgaacagga aggggaagtg gttgtaatca atacctgtgg gtttattgac
     1861 aatgccaaag aagaatcggt caacacaatt ttgtcttacg tccaaaaaaa gcaggaaggc
     1921 cttgtagaaa aggtttttgt aacgggctgt ttgtccgagc gctataagcc ggatcttatt
     1981 aaagaaattc cagatgtcga tcagtatttt gggaccacag aattgccgag tttactggct
     2041 gcgcttggcg ccgattacaa gcacgagttg atcggtgagc gattgaccac cacgcctaaa
     2101 aattatgcct atctgaaaat tgctgaaggt tgtgatcgcc cctgttcttt ttgcgccatt
     2161 cccctcatgc gcggtaaaca caaaagtaag cctattgaag acttggttat cgaagcgact
     2221 aaactggctg ctgatggcgt aaaggaactg attttaattg ctcaggacct tacttattac
     2281 ggcttggatt tgtataaaaa aagggcttta aaagagttgc tcgaggcgct tgtaaaggtt
     2341 gagggcattg agtggatcag attgcattac gcttttcctt ctggctttcc tttggaggtt
     2401 ttagacctta tgcgtcaaga atccaagatt tgtaattata tcgatattcc cctgcaacat
     2461 atttcagatc ccatactcaa gtccatgcgt cgtgggacca ctcaggaaaa aacaaatgca
     2521 ctcattcgag agttcagaga gcgcgtgccg ggtatggcta ttcgtaccac gttaatagtg
     2581 ggttatccag gagagactga ggccgatttt aatctgttga aacaatgggt gaaggacacc
     2641 aaatttgatc gattgggttg ttttacttat tcgcacgaag aaaacaccca tgcctttaat
     2701 ttagaagatg acgtgccaga agaggtgaaa atggagcgcg cgaatcaaat catggcgtta
     2761 cagtctgata tttcatgggc cctgaaccaa gaaaagatcg gcaaacaata tcgcgtagtg
     2821 atcgaccgaa aagaaggcga atactacgta gggcgcaccg aatacgacag tcctgatgtg
     2881 gataatgagg ttttaattgc cgctcaggat ggttatctca gacagggtga tttttactct
     2941 gttcgcatca ccgatgctga ggacttcgac ctatacgctg aagttttgcc ataagatgag
     3001 tttcagaaac aacttttttt tgggtctaat gcttgttggc ttctcctgtc aggggccaaa
     3061 tcgccagagt ggccctgccg aagtcgtttc atcatgggaa tctaatattg cggtccctgg
     3121 tccttggcaa agtcacgaga acgtcaccac cccgaattta ttttctgatg gcacaaatct
     3181 ctatctcact tggataaaaa gagattcggt cctaagtacc ctgtactata gccgtttggg
     3241 tcaaaatact tggtccgatc cccagcgcat tgcccagggt gaggattggt ttgtgaattg
     3301 ggcagatttc ccccaatttt cggccaataa ggggacctta atggctacgt ttttaaaaaa
     3361 atcggattca ggaacttata cctacgacat ttattacacc ttgtcgcaga ccgataaaac
     3421 atggggcttg cctcaaaagt tgcatcggga cagtgcaaaa gctgaacacg gttttgtcag
     3481 catcgcccca accaaaaagg gatttgtggt gagttggtta gacggccgaa acacgctagt
     3541 atcaaacaat cagagtagcg gtggttcctc tgcgggccat cagggtcatg ctgctggagc
     3601 catgagtata cgaagtgccc ttgttgactt tgaggggacg ctgagtcctg aatcactgat
     3661 tgatgagcgg gtgtgtgatt gttgtcaaac cgccatcgct gtggatgagc ggggatacac
     3721 cttagtcgcc tatcgcgatc gaagtgctga ggaaatcaga gatatctctt taaagaaagg
     3781 gtctcctgaa tcaggttggt cgaatccggt ttccacaaag gatcactggg gcattgctgg
     3841 atgcccggtc aatggtccgt cgattgatgt atttagaaat catctcgctt tagcctggtt
     3901 taccgcaggt caagacaagc cgcgcgttca agtggctttt agcggaacgg atacactgca
     3961 actgaccccg ggtatgcgca tggattcagg agaggccgta gggcgggtgg atgtggttca
     4021 actatcagag gactcggccg tggttagctg ggtagagcct caaggtttag aggattatgt
     4081 acgcgcccaa tgggtcaatg atcgcgggca aaagggacct ttgcgcaccg taagtcaaac
     4141 tgaatcgtct cgtgctagtg gctttccccg cctagtgcgc catggcgatc gtttttatct
     4201 ggcgactaca cgcggtgtac ccggaggcgc gagtaaaatc accttaactt catggccttt
     4261 gtcggacatg ctaccatcag actaatccat gactgcaccc agtagagcgc gcatcttatt
     4321 tattggtcat caatggccag aacccaaact tacggcagcg ggctggcgca cctgtgaact
     4381 cattcaaggc tttatcaacc agggtaacgc ggttgatttt gcctgtgtcg ttaatcccgt
     4441 acttcaggtc gaagatgctg tgctgtcagg ggtcacatgc cacatgatta cgctaaatga
     4501 cgatggattt gacctgctac tccaagaaat ccagccccaa atggttgtct ttgaccgttt
     4561 cataacggaa gagcagtacg gatggcgtgt aagattacaa tgcccggacg ccgttaaggt
     4621 tttagatacc caagacttgc attttttgag aaaaaccaga gcggcctata tcgataaata
     4681 tccttcggct tttgacgcgt ctggatgtcc tactcaattt ttttatggtc ctttggccat
     4741 gcgtgaattg gccagtattt ggcggtgtga tcaaaccttg ttgatttctg agttcgaata
     4801 cgggtttttg accgatcact tttctatacc cgagacctta ttgacttatc tgcctttggg
     4861 gagtagtgta gcgccacaag cggatcgtcc atggaaaaat cgccagcatt ttttatgggt
     4921 tgggaaccgt aaacaaccgc ccaatcacga ttcattgatg tatttaggtc aaagactttg
     4981 gccctcgatt caccgagaat taccagaggc cgaactgcat gtgatcggcg ccaataaaaa
     5041 tacgcttcaa acccaaatga tcgcccaaac taaaggtatg gtagaaatgg attgggttga
     5101 cgatctgcag ggcctaatga cgcagtaccg tgtcaattta gccccggtac gatttggcgc
     5161 aggactcaaa ggcaagatta tctcagccct gagttgtggt ttagtcaccc tcacttcgcc
     5221 cattggtgct gaaggactgg actgtaaaca aaacaatggc gtcaatgttg ctcttgaccc
     5281 ccaggcattc atcgaggcat ccgtaagact ataccgggaa aaagagcatt ggcaacgcgc
     5341 caatgagtcc gggttgtccc ttattcaggc ccgcttctca atcgggcact atatgggtca
     5401 actcatggaa gatttgaatc gaattaaaga cacattgacc acgcaccgcc agcagcattt
     5461 tatggggcaa atcttgcaac accagtcgct taacgcgtcc aaatacatgg gacgttggtt
     5521 gaccctaaaa aacgctcaga ttaatccaaa ataaagacat tcgcatcgac cataaacaaa
     5581 ctgtttacaa aaaacagctt gccattttcc caaaaggaac cgaataaaat gtcgtcagtc
     5641 aaataaacca tacttccttg tcctaaagga tattcaccaa atacaaagct atcgctcagt
     5701 tttttcttcg catcagatcc tgagaaccca gaataagatt ctgctggacc gtcaaaataa
     5761 ccgacattgt atcctcgctc gagttttaaa taagcgtcgt catcttgctt aaggctgaag
     5821 tataattcag aataaccaaa ggccaggggg tgcgttgtat ccaggtgaac cttataaatg
     5881 cttccggtaa ttaaatcttt cacgctgtgg cgctcacggt ccccataggg aatcatgtta
     5941 gacttatctg aagactctgg ttcaatcgac ttcaaaccaa atccatctcg atccgcaaag
     6001 acattgaccg cctggtcaat ggcaatgagc ttccctcctg agcgtaccca atctttaagt
     6061 ccattgagct gctcttctga gcgcaggtta gaataatagc cgcttggcat aacgagcacg
     6121 tcaaattggg ataaggtctt ggcagaaaaa ttggcggtat ttattggggt gaaagggtac
     6181 tttagttctt gctccataaa gtgccaaatt gtcccataac tcagtgatga gaccccatcc
     6241 cctttgagaa tcccaatacg atgaggatta attagtttga tatccgtaga tcccagatca
     6301 acaccgttgt cactaaaacc gctgctcagt gcggtaatct gtcgctgatg agtgctggct
     6361 aattttcgta tgagtggatt aaagtctttt cgctttatgt tatccccttt agtaatgact
     6421 aaacttcctc ggggaaattg tttcccccca aaagaaaggg gcttttcgct aaaacgaacg
     6481 cggaggcctt tttttaataa atcggtaaga aaggtggcgt cggcgagatc accccatggg
     6541 gcaataaacc cggccacaac ttcaggctcc gcgggcaact gaaaacgacc gttgtatgga
     6601 ttgttttgac tggtttctag aggcttgtcg gtaaccatac aattcagacc aaaagcatag
     6661 ggtaagctcc aagcggtaat gtcataggtc aaagggtctt ctaaagccgc ttctgcctca
     6721 aaaaggacac gaaccatagc gccttggggc tgatcagtac ttaggacaag agcatcagct
     6781 acattgcgtt gcgtattttt ttgnngggtg ctatagtccc atcctttgac cactgtggat
     6841 tgcgcaaaac tgtattggat ttcatgacga tccaagagct gagttagcgc ctgaatttta
     6901 tccgaattgc cctgaaggat atagttttgc agcggttgag gggtgcggaa gtacgatttg
     6961 aactctttat tgagtttcag ggcatttttt gaagagattt caacagttga aagcccagtg
     7021 gtggtgtgat gggccgcacg atccactaag gttaactcaa cgccttcgtc gttaagtatc
     7081 cccaatcccg cgcgtccatt accggcttgt tcgtaggtca tgccaatggc cccgagatag
     7141 gtagggtagg tgtctccata acttggatag agtaagtcga aaaattgacg tgtaaaatac
     7201 aaccaaccct cttgatcaaa atatttggca ttgttttgtc ctatttccac ctggaattgt
     7261 ttttgccatg gggtgatgac ctcgtgataa gggactgctg caggggcaaa atagtagggt
     7321 tcgttgatgc cttgctcgtg aaaatcaaca tgaacatggg gcatccattt atgatacaag
     7381 ggcaatcttt gttggctctc gacttgtttt gcccaggccc aatcgcgatt taaatcaaac
     7441 aaataatgat tcggtcgccc tcccggccaa ggttcattgt gttcatcggc tgcttgtagg
     7501 gggttgtatg ggctcgtgcc tacttgattg taccaattag cgtaacgatc ccgtccatca
     7561 ggattgacac aggggtccat aataaccact gtatttttaa gccatgggga cgaaccatta
     7621 atgagttcat aagcggtttg catggcagct tccatacttg aggcttcatt tccgtggaca
     7681 ttgtagctca accaaactat ggcgacatca ggactggaat tcccaggaag catgccaatt
     7741 tgacggagat tattttgacg tatttcctct aagcgggcct ggttttctgg cgtggtaatt
     7801 atggcgtaat tcaacgatcg tcgttcatta gtctcaccgt actggtgaaa actaatccaa
     7861 tcggaggcat tggccaaatg ctcaaaatag gaaaccattt gatgatgacg cgagtatttt
     7921 gtcccgattg ggtaacccaa aaacgcttcg ggagatagga tctgactact gaccaattga
     7981 gtgcagaaca aggttagagc aatgagaata cgcttcattt tttataaaaa ttaaaagggg
     8041 gttgtgttta aaaatgagga ctaaatataa gaattcctat tagacgcata acaaacccaa
     8101 atggataatg ccaaacacga cgaaacatcg tatttttgtc atggctttag cgagattggc
     8161 acaggttatc cctgtgatta tggaaaaaca actgctgaca tataaatcca cgagacagtt
     8221 ctcagactta gtccttgatt atttggaagg aagcgatcag ttacgtccgt tttttaatcg
     8281 agctcctgat ttagagcaag ttaaggcgca gattcaagag aagtctcaga gctttccccc
     8341 atcttcgcgg gcaaaactcg tccaagcgct gatcgggcag taccaagatt tttccttgaa
     8401 tgaatctttt gatcagcgca ttaagttggc gatccaagcc ttatcgggtg aaaaaacctt
     8461 taccgtgacc acggggcatc aacttaattt atttaccgga ccgctatact ttctctataa
     8521 aatatttggg gcgattaatt tggccgaaca gtatacagca cagaatccag gttaccggtt
     8581 tctacctgtt ttttggatgg caagcgagga ccacgatttt gaagaaatcg ctcattttag
     8641 aacaggggcg cacaagataa attggcctaa acaaggggct gggcctgtcg gtcgattaat
     8701 gtgtacggac ctagatgagg tgctcaatac gctggataag ctatgggggg gcacagtcat
     8761 aggacgcagc atgctgaacc tatttaaatc agtctatacc cccgagctaa ctttagcgca
     8821 agcaacccga aaattggttc atgagctatt taaggattat gacctcataa tcatcgatgg
     8881 tgatgacgcg gttttaaaat ctgaatttac ctcgataatg cgccatgagt taaccgaaaa
     8941 tggctgtagt caggcgattg aaaaaacaac tcaggcgctc acgctcaagg ggtatcacaa
     9001 acaagtccat ccaagagaaa ttaatttgtt ctattgcgac agtggtttgc gcgagcgaat
     9061 tattgcgaca gaatcgggct ttgctattga tcaaaccgaa atgcgcttta ctcaagggga
     9121 actccttgac ctattggaaa gacgccctga attattttct ccgaatgcct tgcttcgtcc
     9181 tttgtatcaa gaacgtgttt tgcccaattt ggcctacatc ggtggagggg cggaagtggc
     9241 ctattgggct caactcaagg attgttttgc gaccaatgcc ttgacctatc caatggttta
     9301 tttgcgcaat tctatatccc taatcccggc caagctgatc agtaaactaa ggcgtattaa
     9361 tctcgaaatc agcgatttat ttttgccgat ggatgagttg tctcggcgct atgttgcgcg
     9421 caatactggg ctagagattg atttttcggc tcaaatcacg cacttaaaaa agcagtttga
     9481 gcaattgtac ttgatggcgg aacaaactga tgcctcattc atgggcgccg tgggcgcaca
     9541 agagaaaaaa caaatcaaag gacttgaacg gctccagcaa agattgatgc gcgcggaaaa
     9601 aagaaaacac gctcaggata ttcagcggct tgcgaaaatg cgtgagtggc tatttcccga
     9661 aggaaccctt caagagcgca aggaaaacat gagttggggc ctcactcaaa tagggcctga
     9721 gtttttggcg ctgctcaaaa accatattga tccttccgat cacagattta ctttattgat
     9781 ttataattca taaaccctta ggacccttat cccaaaaaag gagttatttt tgactatgca
     9841 gaacaatgtc ctcattcttg atttcggctc acagtacact cagctcatcg ccagacgcgt
     9901 acgtgagctc aatatttatt gtgaaattca cccctaccat catctcccag aagatctctc
     9961 tggctttaaa gccgtaatcc tctctggcag cccattttcg gtacgggcag acgatgcgcc
    10021 ccatccggat ttaagtcaaa ttaaaggtca tttgcccttg ctcggggtat gttatggggc
    10081 tcaatatatg gcccatttta acggaggatt agttcgagag agcaatattc gtgaatacgg
    10141 tcgagccaaa ttagaagtca aagaagagga ttctccattg tttaaggcca tacctcaagg
    10201 gtctcaggtt tggatgagtc atagcgatac cattgccgaa ttgcccacag ggggcgtgcg
    10261 attggcgagt acagaagatg tcgcgaatgc ggcctacaag attgagggtg aagagactta
    10321 tgccattcaa ttccatccag aggtctacca cagcacgcac gggaaacagc ttttggaaaa
    10381 ttttttaatt gatgtggctg gtgttgagcc cacgtggact ccagctgctt ttgtggatac
    10441 aaccgttcaa gaattaaaag ataaattagg tgaggatcgc gtcgtacttg ggctcagtgg
    10501 cggggtcgat tcgacggtcg ctgcggtact cttacacaaa gccattgggg ctaatcttta
    10561 ttgtattttt gtcaataatg gtttattgcg aaaaaatgaa tttcaaagtg tcttggatca
    10621 atatcagcac atgggcctca acgtcaaagg ggtcgatgct tcggtgcgat ttttggaggc
    10681 atnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncattaaaa ggagaaaaag
    10801 atcccgagac aaaacgcaag gccatcggaa aagtttttat cgacgtattt gatgacgagg
    10861 cgcatttagt cgaaaatgtt acctggctcg cacaaggaac gatctatcct gacgttatag
    10921 aaagtgtctc ggttaatgga ccttcggtaa cgataaagtc tcatcacaat gtgggcggac
    10981 tcccggatta tatgaaacta aagattgtgg aacccctgcg tatgttgttc aaagatgagg
    11041 tgcgtcgtgt cggtgcacag atgggtatcg atccaaatct cttgggcagg catccttttc
    11101 cgggtcctgg tctagcgatt cgaattctcg gcgatatcac tccggaaaag gtgcgcatct
    11161 tgcaggaagt cgatgccatt tttatcgatg gattacgcaa atgggattta tatgacaaag
    11221 tatggcaagc cggcgccatt ctattgcccg tacaaagtgt aggtgtaatg ggggacgaac
    11281 ggacatatga aaatgtggtg gccttacgcg ctgtagagag taccgatggg atgaccgctg
    11341 attgggtcaa ccttccttac gcctttttgc aagagacgtc aaacttaata atcaatagag
    11401 taaaaggggt gaatcgcgtg gtttatgaca tcagttcaaa accaccggcc accattgaat
    11461 gggaataaat gataaagcgt tgcatcggag tatttggtat tttattttgg actgcaatcc
    11521 aagggattgt ggcacaaaac agtgttttgg atgtccaaat ttaccacgta caacagggtg
    11581 aggaattacc gcaaatcatc agaaaattca aaacatgccg tgcttatctc ttggcgttaa
    11641 atcccgaact gaaatcaact ttagcccctg atttatcctt aattgttccg aaagcttcgg
    11701 caatggaaaa gggcgatgaa ttgtctgttg actttgtgga gcataaagtc aagcgcaaag
    11761 aaaccctgtt cggaatcgct caatcctatg ggctcagctt aagtgacgtg caagcctata
    11821 accctgaggt taccgctgaa tccttaaata aaggagatcg actaaaaatc tttaccgcgt
    11881 gtaccatacc gagtcctgaa caagtccaat tgattcggga tgaatggacc aataaaatgg
    11941 tcacatggca tgtcgtagcc gtcaaagaaa ctctatggtc tctggggcat cgatataata
    12001 tgagtatggc ggagttacaa gaacttaacc ctgatttaac tcagaatttg gtcgtcggac
    12061 aaaggcttaa ggtacgcggc acggcattag actctatcgg ggttggggac ccgaattttg
    12121 actattacgc ggtgcaaccc aaagaggggt tttttagatt acgccagaaa tttggtttaa
    12181 ccaaagaaga aattgtcgcg ttaaatccca atgcggatga gggacttaaa ttagggatgg
    12241 tcttgcgatt gccaaaagcg gtcatgtcct atnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnaccg acagtagcgc
    12361 acaaagaata accttgatgc tgcctttgca actcgagggt tttattcaag attcgctggc
    12421 cttaaatcag caatatgttc aagggaatcg cttgttgcgt attgctttag atttttacac
    12481 gggggtgctt atggctcaag actacgctaa gtcctatggg cttgatgtgt ctcttgatgt
    12541 attggatacg caggccaaaa aatcagtagt ggacagtctt ttgggtgttt atgattttag
    12601 ccagagtgat atggtgatcg ggcccttttt gccagccaat gttttggcgg ttgctgagca
    12661 tctaaagcgg tctgacctcc cggtggtgtc gcctttgagt cgtcctaatg gacccgtgcc
    12721 ggataatctt gtccaaacga tccctgatgc ggcgtctatg cgccgcgcgt taatggatta
    12781 tataaagaat aacaaacaag agcgaaaaat gctttttgtg ggtgacgctg atgctccggg
    12841 gctcgctgca atgcgtggtc agtggccgaa ggttaaggtg cttttgcctc gtgagcaagg
    12901 ctatattgat cctgatgata ttttacccca acttt
//
LOCUS       DPUP01000203           16856 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7434,
            whole genome shotgun sequence.
ACCESSION   DPUP01000203 DPUP01000000
VERSION     DPUP01000203.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 16856)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 16856)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16856
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..235
                     /locus_tag="DHV98_07595"
     CDS             <1..235
                     /locus_tag="DHV98_07595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit F"
                     /protein_id="HCK06206.1"
                     /translation="ALRDKTIHFVLVRAVRYPEDPAVMDAVLRDKMVDHAKAREAKLA
                     YAGVGLGHGSDYGQPPRKDEAYTQVYSGLKWLV"
     gene            223..1236
                     /locus_tag="DHV98_07600"
     CDS             223..1236
                     /locus_tag="DHV98_07600"
                     /inference="COORDINATES: protein motif:HMM:PF02424.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HCK06207.1"
                     /translation="MAGLRFFVLLIAPLLILGCGPTEDLRVFYGNAFGTTYVVKCYSD
                     LDSAELQNEVNRLVDQVNASISTYDPQSIISRINQGDTGVVADLYFKEVLSLSREVNK
                     ATFGFFDPTVGAIGNALGFGPQRFSNIPSDHVLDSLCQFVGLDLVSIRPKSGVVEKPD
                     GVYLDFNAIGKGYGIDVIGRHVENMGITDYLVEVGGEIRAKGQNKDKNKPWIIGIESP
                     ELTQEGRSIDKVLAIQNQSLASSGNYRKFRLDTVSGRKFVHTINPLSCRAEQNAITSA
                     SVWASTCAEADAYATAIMAMGLERVQDLIQERPELIVYYTYHDAQNQPKWYASPNLLA
                     QFR"
     gene            complement(1297..2064)
                     /locus_tag="DHV98_07605"
     CDS             complement(1297..2064)
                     /locus_tag="DHV98_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012023837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HCK06208.1"
                     /translation="MSKVFKSILNTIPRPWLISMSLWVRPLLDIYWRGHRYTDPINGK
                     SYRRFLPYGYEDMRSNVLSPGTLSLERHRLCWLYLKEHTELFSKNIKVLHFAPEQAFY
                     PRFRRLKNIEYTTTDLNSPLADVHADICALPFDNNQYDMIICNHVLEHIPDDLRAMRE
                     IYRVLKPGGLAILQVPYQGNREKTFQDESITDPKQRAEIFGQYDHVRVYGMDYFERLR
                     RVGFRVEAFDIANELDLAQIQRYGLALGELIPLAFKD"
     gene            complement(2082..2891)
                     /gene="map"
                     /locus_tag="DHV98_07610"
     CDS             complement(2082..2891)
                     /gene="map"
                     /locus_tag="DHV98_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010255332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HCK06209.1"
                     /translation="MIQIKTTEEIELMRQSARLVSKTLGMLAKEIKPGVTTKALDTMA
                     ETFIRDHKAKPGFLGLYGCPSTLLTSVNEAVVHGLPTEKTLEDGDIVAVDCGVFMNGY
                     YGDHAYTFQVGTVAPETIKLLGVTKASLYKGIEAFKVGNRIGDIGFAIQQYCEAHGYG
                     VVRELVGHGLGKTLHEDPEVPNYGKRGRGKKILEGMTIAIEPMINMGTHKVKQLDDGW
                     TIVTQDAKPSAHFEHNIAIVNGKPELLSTFDYVYEALGINSEEEAPFKSNA"
     gene            complement(2897..3268)
                     /locus_tag="DHV98_07615"
                     /pseudo
     CDS             complement(2897..3268)
                     /locus_tag="DHV98_07615"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3213..3419)
                     /locus_tag="DHV98_07620"
                     /pseudo
     CDS             complement(3213..3419)
                     /locus_tag="DHV98_07620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    3240..3258
                     /estimated_length=19
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3409..4029)
                     /locus_tag="DHV98_07625"
     CDS             complement(3409..4029)
                     /locus_tag="DHV98_07625"
                     /inference="COORDINATES: protein motif:HMM:PF14595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HCK06210.1"
                     /translation="MKTYLFSLMVFSALILGCNNSKQGAENAELEDSATLEQAGENTT
                     FSELNINKQVADTIDGGMMLLGRISAEGLNQEPYSIWFEENSKTYTPDMALLEEIKPL
                     IKPCYIKVFMGSWCEDSQREVPALLKLLKLTEFDRSQLEIIAMTHDKDTPENYEADYE
                     IEFIPTIMFFKDGAELNRIVEYTQETLEQDVLKILKQQAYTPAYAE"
     gene            complement(4033..>5356)
                     /locus_tag="DHV98_07630"
     CDS             complement(4033..>5356)
                     /locus_tag="DHV98_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023244.1"
                     /note="catalyzes the interconversion of 2-phosphoglycerate
                     and 3-phosphoglycerate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCK06211.1"
                     /translation="GRIVYQDLAKINRAVEQGSIDQEPELQKAFDYAKQNSKNIHFLG
                     LLSDGGVHAHIDHLKALIKAAAKAKVPHILVHGFTDGRDVDPKSAPSYIEALQPTLAQ
                     TGAQLASLIGRYYAMDRDQRWERVKKAYDLLVRGVGEVTTDPITALQDSYLKGITDEF
                     IEPMVIQNALSDHSESRDTTIKSGDVVIFFNFRTDRGRELTQVLSQNAFEQFDMEPLD
                     LYYCTLTNYDDTFKNIKVVYDKDNLQDTLGETIAKAGKTQIRIAETEKYPHVTFFFNG
                     GRETPFEGENRLLCPSPKVATYDLKPEMSAFDIRDKIMAEIAQESADFICLNFANPDM
                     VGHTGDINAAIKACETVDQCVSQIVPLALEHGYSTLIIADHGNSETMINPDGSPNTAH
                     TTNPVPLILVDQRIKYIRSGVLGDIAPTILKLMDLDIPEAMTQSPLID"
     assembly_gap    5357..5478
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5479..5704)
                     /locus_tag="DHV98_07635"
     CDS             complement(<5479..5704)
                     /locus_tag="DHV98_07635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018944175.1"
                     /note="catalyzes the interconversion of 2-phosphoglycerate
                     and 3-phosphoglycerate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HCK06212.1"
                     /translation="MSQKVLLMILDGWGMTQNPEVSAVAQAKTPFMDALPHQYPNAQL
                     LTHGPHVGLPDGQMGNSEVGHMNLGAGRIVY"
     gene            complement(5746..>6424)
                     /locus_tag="DHV98_07640"
     CDS             complement(5746..>6424)
                     /locus_tag="DHV98_07640"
                     /inference="COORDINATES: protein motif:HMM:PF02557.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HCK06213.1"
                     /translation="LWAEDYIQDYTPQELIGKAPRDLVGSTYLTTMQRDTARALKLMQ
                     ETAKKDGIEIKVVSAFRSFDRQKEIFENKFKRFTAQGNTPEQAVNRIIEYSTLPGTSR
                     HHWGTDLDLIDGGVTAPESVLESRHYYGSGVFCALREWLEANAAHYGFYQVYTNHPDR
                     KGFAHEPWHYSYAPVSIPMLKAFMKLDLEAILSEEKILGASVISGSFLAEYRKKHLLD
                     INPLLLD"
     assembly_gap    6425..6486
                     /estimated_length=62
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6547..7260)
                     /locus_tag="DHV98_07645"
     CDS             complement(6547..7260)
                     /locus_tag="DHV98_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HCK06214.1"
                     /translation="MNNLLLASTSTLFGSPYLSYLIPELRLFFRGVNRITFIPYARPG
                     GCTENEYTQKVRHTFGQINIEVIGLDEVQDPIAVLKESKGIFTGGGNTFLLVQRLYEL
                     DLIDPLNFVLDQGIPYLGTSAGSNICGWGMHTTNDMPIVHPPSLRTLGRVPFNLNVHY
                     IEPEKNSTHMGETRETRIREFQEQQNVPVVGLPEGTWLRVLNSEITVKGAHPAVVFPP
                     YESRYDLNTEEKLILHKAP"
     gene            7331..7870
                     /locus_tag="DHV98_07650"
     CDS             7331..7870
                     /locus_tag="DHV98_07650"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06215.1"
                     /translation="MMYKINVFFISTGFVLWTLMNFSQTRALTQSQVHKFYVSTANIE
                     FNPSTNNLEIIQRIFTDDIENLLRARYGAQIKLGAVNEAEENAELIKRYVLNQWTIKN
                     NNQDLVLNYLGHQYDIDQVKIFIEVPINGSLAELFFENKTLFDLTSDQQNILHVKVGD
                     ERKSLLLFSENPNGVLNFN"
     gene            7975..10320
                     /locus_tag="DHV98_07655"
                     /pseudo
     CDS             7975..10320
                     /locus_tag="DHV98_07655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650628.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
     assembly_gap    9624..9681
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            10441..10713
                     /locus_tag="DHV98_07660"
     CDS             10441..10713
                     /locus_tag="DHV98_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HCK06216.1"
                     /translation="MILPVLFISGAEIAFIVFIVLMVFGADKVPDIARGLGKTMKQIR
                     HATDDIKKEITKSADKQGIDVTDFKKSIDQVKDDVDQITGPIKRQF"
     gene            complement(10714..11355)
                     /locus_tag="DHV98_07665"
     CDS             complement(10714..11355)
                     /locus_tag="DHV98_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HCK06217.1"
                     /translation="MDFLPHDIEQYAEGHTQEEPQLLKELNLETWQTVLAPRMLSGPL
                     QGRLLSLIAQLLAPKAILEIGTYTGYSALCLAEGLPKDGVLHTIDRNAELRRLQQKYF
                     DRSGKAHQIVTHLGNATEILPSLDQKFDLVFIDADKSNYLNYLTLVTPMLRSGGLLIS
                     DNVLWSGKVTQKAQGDDLDTKVLQEFNHKLKTHPEYQTVLLPIRDGLSLARKR"
     gene            complement(11355..12440)
                     /locus_tag="DHV98_07670"
     CDS             complement(11355..12440)
                     /locus_tag="DHV98_07670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06218.1"
                     /translation="MMKRKLRINGHSHLLPYPEEIPAFMKDKGIFWVDKDRKFMLQKD
                     WSRPVTDSSFFLDEKLQWMDRYKIDHAVVLNLSQLYGNGLRLEEMKQALRFQNDFNAR
                     IQHDHGSKFTCGFVVHPGFVRGAVWEIERCVEELGLRLLCLPTHYMDTIGTWRSIFDA
                     ENEPIFELASSYNLAVEIHPYDGEKFIKLQNTAWRFHLIWMLAQCADAYHFYTLNGYA
                     DKFPGMRTCFAHGGQLAQINLGRRIQGFDGRPDLFEGKVHPRKSVGHKNIFFDTLVHD
                     TGSLELLIKNQGSKQVLMGLDDPYPLGEMESAAQSSYPGKILDLAQKQGLLNAQECDE
                     IWEDNVLQWLFGPDQEAKNNLIDKILA"
     gene            complement(12492..13277)
                     /locus_tag="DHV98_07675"
     CDS             complement(12492..13277)
                     /locus_tag="DHV98_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007650617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain dehydrogenase"
                     /protein_id="HCK06219.1"
                     /translation="MELRLNGKTALVCGSTAGIGKATAIELASLGANIVLLARNPEKL
                     KQTLDALPRELNQTHDFIAVDFRDTHAFKSTVEALVKKHQIHLLINNTGGPASGPAFD
                     ADPQQYASAFAQHLLCNQILVQGVVPSMKQAGYGRIINVISTSVKQPIENLGVSNTIR
                     GAVANWSKTLSVELGPFGITVNNVLPGFTATDRLEDIVNSAAKRLNKTTEQARDFMTS
                     VVPARRFAQAEEIAFGIAFLCSPAAGYINGINLPIDGGRTKSL"
     gene            complement(13338..14789)
                     /locus_tag="DHV98_07680"
     CDS             complement(13338..14789)
                     /locus_tag="DHV98_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxymuconic semialdehyde dehydrogenase"
                     /protein_id="HCK06220.1"
                     /translation="MTKVLNYINGQFQPAFSGATLENIEPATGVPYGSLPQSDAQDIE
                     QAYAAAKQAFGPWRHTTLEQRSAILYRIADLIEKNLEELAQAESRDNGKPLSLAKTVD
                     IPRASSNFRFFAHALTQFSSEAHESVGKNSINFTLRHPIGVVGCISPWNLPLYLFTWK
                     IAPALAAGNTVVAKPSELTPVTAFLLAELCQKAGLPAGVLNIVNGTGSSAGQAIVAHP
                     NIKAISFTGGTATGAHIARVAAPMFKKLSLELGGKNPNIIFSDCAYDRMLETTIKSSF
                     ANQGQICLCGSRIFVERPLYDRFKRDFVSRVAELRVGPPSEDVDLGALISKDHQQKIL
                     DYIALAQKEGGTLLTGGQEAKIEEHPQGYYLQPTVIEVNDHLCRVNQEEIFGPVVTLM
                     PFDHEEEVIEMANSVTYGLSASLWTSNLDRSMRFGQQLESGIVWVNTWLNRDLRTPFG
                     GVKSSGVGREGGFEALRFFTEPKNICISYAPKI"
     gene            complement(14789..15291)
                     /locus_tag="DHV98_07685"
                     /pseudo
     CDS             complement(14789..15291)
                     /locus_tag="DHV98_07685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011350328.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-aminomuconate deaminase"
     assembly_gap    14940..14992
                     /estimated_length=53
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(15302..16711)
                     /locus_tag="DHV98_07690"
     CDS             complement(15302..16711)
                     /locus_tag="DHV98_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kynurenine 3-monooxygenase"
                     /protein_id="HCK06221.1"
                     /translation="MNKHDKILIIGAGLCGSLLALRLAQRGYQVTLVEKRPDLRRARL
                     DAGRSINLALSDRGLAALKMAGMDEKALAISIPMRGRMIHQQGRDSFFSPYSGNPDTA
                     INSISRPGLNALLLDALEPMNNVSLHFEAPCIELDLSRGLAKFEQRSSQTQSDQKEPF
                     EIHAAVIFGCDGAGSIVRKALQAQQKEHFDFSLDWLSHGYKELSIAPNSEGDYKLRAD
                     ALHIWPRGEDMIIALPNLDKSFTVTLFMSHTRSPHGFDHIKSEGQIRAYFEEKYPELI
                     ELIPDIIQQYQENPTGPLGTVKCGPWNAQGNALIMGDAAHAIVPFYGQGMNASFEDVL
                     VLDQLMDYGVCPWSELFEQFAKKRKKDADAIADLALDNFHEMKEHTADPIFQRKRAIE
                     VRLEQERPEHYQSKYSMVTFNPELSYHQAMTRGRAQDKAIEQLLRQNKLNESQELDDQ
                     LNLIDQRTQNLLSQIEQNN"
     gene            complement(16708..>16856)
                     /locus_tag="DHV98_07695"
     CDS             complement(16708..>16856)
                     /locus_tag="DHV98_07695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HCK06222.1"
                     /translation="DRGLHDALTHLGVVSDWREPDVIRVAPAPLYNSYRDVHDFVQRL
                     NQCL"
BASE COUNT         4455 a         3578 c         3773 g         4736 t
ORIGIN      
        1 tgctcttagg gataagacca ttcactttgt attggttcgt gcggtgcgct atccagaaga
       61 tcctgccgtt atggatgccg tgttaaggga taaaatggtt gaccacgcaa aggctcgcga
      121 ggctaaattg gcttatgcgg gtgtgggatt ggggcacggc agtgattatg gtcagcctcc
      181 tcgaaaagat gaggcttata cacaagtcta ttcaggatta aaatggctgg tttaagattt
      241 ttcgttttac tcattgcgcc gctccttatt ttagggtgcg gtcccacaga agatttgcgg
      301 gtgttctatg gcaatgcttt tgggaccacc tacgtcgtca aatgttatag tgatcttgac
      361 agcgctgaac ttcagaatga agtaaatcgt ttggttgatc aggtcaatgc ctctatcagc
      421 acctatgacc cacagagtat catttcgcga attaatcaag gggataccgg agttgtggct
      481 gatctttatt ttaaagaagt attaagtcta tcgcgagagg tcaataaggc gacttttgga
      541 ttttttgacc caacggtggg cgctatagga aatgccctag gttttggccc gcagaggttt
      601 agtaatatac ccagcgatca tgttttggat agtctttgtc aatttgtggg gctcgactta
      661 gtttcaatac gtccaaagag tggtgtcgta gaaaaacccg atggcgttta tctagatttt
      721 aatgccatag gtaagggtta cggtattgac gttataggac gacacgtcga aaatatgggc
      781 atcacagatt atttggtcga ggttggggga gaaattcgtg ctaagggtca aaacaaagac
      841 aagaataaac cttggattat cggcatagaa tcgcctgaac ttacccaaga gggccgaagc
      901 atcgataagg tattggcgat tcaaaaccaa agtctcgctt cctcgggtaa ttatcgaaag
      961 tttcgcctgg acacagtttc gggccgcaag tttgtccata cgatcaatcc cctaagttgt
     1021 cgggctgagc agaacgccat taccagtgca agtgtatggg cttcgacctg tgcagaagcc
     1081 gatgcctacg ccacagcgat tatggccatg ggtttggaac gtgtacagga tctcatccaa
     1141 gagcgccccg aactcatcgt ttattatacg taccatgatg cacaaaatca gcctaagtgg
     1201 tatgcttcac caaatttatt agcgcagttc aggtaaaagg gaaatataaa gctcaagcct
     1261 gccttattta ctcgaaacat gccggtccat gagggctcaa tctttaaaag cgagtggtat
     1321 cagctcccct agcgctaaac catagcgttg aatttgcgct aaatcgagtt cgttggcgat
     1381 atcaaaagcc tctacccgaa aaccaacacg gcgcaaacgt tcaaaataat ccattccata
     1441 aacacgcacg tgatcgtatt gaccaaaaat ctcagcgcgc tgttttggat ccgtgatact
     1501 ttcgtcttga aaagtcttct cgcgattgcc ctgatagggg acttgtagaa tagccaatcc
     1561 tccgggttta agcacacggt atatttccct catagcgcgc agatcatccg ggatgtgttc
     1621 caatacatga ttgcaaataa tcatatcgta ttggttattg tcaaagggca gcgcacaaat
     1681 gtctgcatga acatcagcca agggtgaatt taagtccgtc gttgtgtatt caatattttt
     1741 taagcgccga aacctggggt aaaaggcctg ctccggggcg aagtgtaaga ctttaatatt
     1801 ttttgaaaag agctctgtat gctcctttag gtataaccag caaaggcgat gccgttctaa
     1861 ggataaggtt cccggcgaaa gaacatttga gcgcatatct tcataaccat agggtaaaaa
     1921 tcggcgatat gattttccat ttatcggatc ggtatagcga tgcccacgcc agtaaatatc
     1981 aaggagtggc cgcacccata aactcattga aataagccag ggtcttggga tggtattcag
     2041 aatagactta aagaccttac tcatagttct cccgggcggg tttaagcatt tgatttaaac
     2101 ggggcctctt cttctgagtt tatgcccaag gcttcgtaaa catagtcaaa tgtgctgagt
     2161 aattctggtt tgccattgac tatagcgata ttgtgttcaa agtgcgcact cggttttgca
     2221 tcttgggtga ctattgtcca gccatcgtcg agttgtttta ctttgtgggt ccccatattg
     2281 atcatgggtt caatggcaat agtcattcct tccagtattt tttttcctcg tccgcgtttg
     2341 ccataatttg ggacctcagg atcttcgtgt aatgttttgc ctagtccgtg ccccacaagt
     2401 tctcgaacca ctccatagcc atgagcctcg cagtattgtt gtatcgcaaa accaatatca
     2461 cctattctat tgcctacttt aaacgcttca attcctttgt ataaagacgc tttggtgacc
     2521 ccgagtaatt taatcgtctc aggggctaca gtgcctactt ggaaggtata ggcatgatca
     2581 ccataataac cattcataaa aacaccacag tcaacagcaa cgatatctcc atcctctagt
     2641 gttttttccg tgggtagccc atggactacg gcttcattaa cagaggtcaa aagggtagag
     2701 gggcaaccgt aaagcccgag aaatcctggt ttcgctttat gatcgcgaat aaatgtttcc
     2761 gccatagtat cgagtgcttt ggtggtcacc ccaggtttga tctctttggc caacatgcca
     2821 agcgttttgg agaccaatcg cgcactctga cgcatgagtt caatttcctc tgtagttttt
     2881 atctgaatca tactaattaa gccttgtatt gcgcgtaatg ggcaacatgt tctttgagct
     2941 cagcgatgcg ctgacttccg atgagaaatt ttttacctgt ttttaaacga atggctaatc
     3001 ctttagcacc acgcatattg tacacggtac cgtaggccgt gaataatcta atgccccaac
     3061 ccccgacaaa tccgtaatga accaccgaga tggactctat ttcttcccag gcatgaaact
     3121 ttgttttaaa cggaacaaaa cgcatgtaga gaccttctga attaattcgt gtatccaagc
     3181 gcatccaacg aaaaaataag atcatgccta aattaaaaag gcagaaccct atgactccan
     3241 nnnnnnnnnn nnnnnnnnac agcgtcattc attggttttg aaccaaaagg aacttccaaa
     3301 attaattgtt gaattagccc gtaacagcct acgccaaaaa tccctaataa cagggcccag
     3361 agccaccatt gattgaagcg ttgtgtctca ttaaatacct gctggtcttt attctgcata
     3421 ggccggggta taggcttgtt gttttagtat tttgagtacg tcttgttcca aagtttcttg
     3481 ggtgtactcc acgatgcgat tgagttccgc tccatcttta aaaaacatta tggtcggaat
     3541 aaattcgatt tcataatcag cctcataatt ttctggggtg tccttatcat gagtcatggc
     3601 tataatttcc agttgacttc tatcgaattc agtcaatttg agcaatttga gcaaggcggg
     3661 aacttcgcgc tgactgtcct cgcaccagga gcccataaaa actttgatat aacagggctt
     3721 tattagtggt ttgatctctt cgagtaaggc catatctgga gtatacgtct tactattttc
     3781 ttcaaaccaa atcgaatagg gctcttgatt taatccttct gcactaatcc ggcccaataa
     3841 catcattcca ccatcgatgg tgtcggcaac ttgtttgttg atattcaact cagaaaaagt
     3901 ggtgttttct ccagcttgtt ctaaagtcgc gctgtcttct aattctgcat tttcggcgcc
     3961 ttgttttgaa ttgttacagc ccaaaatcag ggcgctaaaa accattaggg aaaagagata
     4021 agtcttcata atttaatcga ttagtggtga ttgagtcatg gcttcaggga tgtcgagatc
     4081 cattagtttt aaaatcgttg gcgcgatatc gcctaaaaca ccagaacgga tgtatttaat
     4141 cctttggtct actaaaataa ggggtacagg attcgtcgta tgggccgtgt tcgggctgcc
     4201 gtcaggattg atcatggttt cactattgcc gtggtccgca atgattaggg tgctatagcc
     4261 atgttctaaa gccaaaggca caatttgtga aacgcattga tctacggttt cacaggcctt
     4321 aatcgcggca ttgatatctc ctgtatgccc caccatatca gggttggcaa aattcaaaca
     4381 aataaaatcg gcactttctt gtgctatttc agccataatt ttatcccgaa tgtcaaaagc
     4441 actcatctct ggttttaagt cgtaggtcgc gactttggga gagggacaca ataggcgatt
     4501 ttctccttca aagggcgttt cacgcccgcc attaaaaaag aaagtaacgt gggggtattt
     4561 ttctgtttct gcaatacgga tttgggtttt acccgccttg gcaatagtct cgcccagggt
     4621 gtcttgcaaa ttatccttgt cgtagactac tttgatgttc ttgaaggtgt cgtcataatt
     4681 agtcagcgta caataataga ggtcaagggg ctccatatca aattgctcaa atgcattttg
     4741 gctcaagacc tgggttaatt ctctacctcg atcggttctg aagttgaaaa atataaccac
     4801 atcaccagat ttgatcgtcg tatctcggga ttctgaatga tccgataggg cattttgaat
     4861 caccatgggt tcaataaact cgtcggtaat ccctttgaga taagaatctt gtagtgcagt
     4921 aattgggtca gtggtgactt caccgacgcc acgcaccagc aggtcataag ctttttttac
     4981 gcgctcccat cgctgatcac gatccatagc gtaataacga ccaattaagc tggcaagctg
     5041 ggctccagtt tgggctaatg ttggttgtaa tgcttcaata taacttgggg cgctttttgg
     5101 gtccacatct cggccatctg taaatccgtg gactaaaata tggggcactt ttgctttagc
     5161 cgctgccttg attaaggctt ttagatgatc gatatgcgcg tgcacccctc cgtcggataa
     5221 aagccccaag aaatgaatat ttttgctgtt ttgtttggcg taatcaaagg ccttttgtaa
     5281 ttctggttct tgatcgatgc ttccttgttc aaccgcacga ttgatttttg ccaaatcttg
     5341 gtaaacgata cgtccannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5461 nnnnnnnnnn nnnnnnnngg taaacgatac gtccagcccc taaattcatg tggcccactt
     5521 cactattgcc catttgtcca tcgggaaggc cgacatgcgg tccatgagtc agtaactgag
     5581 catttgggta ttgatgcggt aaggcatcca taaatggcgt tttggcttga gccacggcag
     5641 agacctctgg gttttgggtc attccccaac cgtctaaaat catcaaaagt accttttggg
     5701 acatggatta tggtttaaag cgcaaagata agcattacgg tgggttcaat ctaaaagtaa
     5761 agggttgata tccaggaggt gtttttttct gtattcggcc aaaaaggatc cgctaattac
     5821 tgaagcgcca agaatttttt cttcactgag gatggcttca aggtccagtt tcataaacgc
     5881 ttttagcata gggattgaga caggggcata actgtaatgc cagggttcat gggcaaatcc
     5941 ttttcgatca ggatgattgg tatagacttg gtaaaatcca taatgtgctg cgttggcttc
     6001 aagccattct cttagggcac aaaaaacccc ggagccgtaa tagtgtctcg actccaatac
     6061 ggactctgga gcagtaaccc cgccgtcaat taaatctaaa tcggtacccc agtggtgtct
     6121 tgaagtacca ggaagggtag aatattctat aatgcgattc accgcctgct ctggggtatt
     6181 cccctgggcc gtaaatcttt taaatttatt ttcaaaaatt tctttttgac ggtcaaaact
     6241 gcgaaaggcc gataccactt tgatctctat accgtctttt tttgcggtct cttgcatcaa
     6301 tttaagggcc ctggcagtat cgcgttgcat cgtcgttaaa taggtgctcc cgaccaaatc
     6361 tcttggggct ttgccaatca attcttgcgg ggtataatct tgaatgtaat cttcagccca
     6421 aagcnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnagaa gtgccggggt actcaaactg attaatttta aaaatagcgc tctgtccatc
     6541 agattattat ggggccttat gaaggattaa tttttcttcg gtatttaggt cataacgcga
     6601 ttcgtacggg ggaaacacta cagcggggtg ggcgccttta acggtgattt ccgaattaag
     6661 tacacgaagc catgttccct cgggtaaccc aactaccggg acgttttgtt gctcctgaaa
     6721 ttctctaatt ctcgtttccc tggtttctcc catatgggtg ctgttctttt cgggttcgat
     6781 ataatgaacg ttaagattaa aggggactct gcccaatgtt ctcagggacg gcggatgaac
     6841 aatcggcata tcgttagtgg tgtgcatccc ccatccacaa atatttgacc ctgcactggt
     6901 gccgagataa gggattcctt gatccagcac aaagtttaat gggtcgatta aatctaattc
     6961 ataaagccgt tgaaccaata aaaaagtatt gcctcctcct gtaaaaatcc ctttggattc
     7021 ctttaaaacg gcaatagggt cttggacctc atcaagaccg atgacctcaa tattgatttg
     7081 gccaaaagta tggcgaactt tttgggtgta ttcattttca gtacagcccc cgggccgcgc
     7141 gtagggaata aaagtgatgc gatttacgcc acgaaaaaat aggcgaagct caggaattaa
     7201 ataagataaa tagggagacc caaaaagggt cgaggtactg gccagtaaga ggttattcat
     7261 agaatactca ggtttaatat agtcgcatat tctccttatt tccttaggtt tgtgatacga
     7321 cataaaaact atgatgtaca agataaatgt tttctttatt tctacgggct ttgtcctatg
     7381 gactttgatg aatttttccc agacaagggc cttgacgcaa agtcaggtcc ataagtttta
     7441 tgtgagtacg gccaatattg aatttaatcc gagtaccaat aaccttgaaa ttattcaacg
     7501 cattttcacc gatgatatag aaaacctgct gcgtgcgcgc tatggagcgc aaattaagtt
     7561 gggcgcagtt aatgaggccg aagaaaatgc cgaacttatt aaacgatatg tgctcaatca
     7621 gtggaccata aaaaataata atcaggattt ggttttgaat tatttagggc atcaatacga
     7681 tattgatcaa gtaaaaatat tcattgaggt tccgataaat ggatctttgg cagaactttt
     7741 tttcgaaaat aagacgctct tcgatctcac ttcagatcag caaaatatcc ttcatgtaaa
     7801 agtgggtgat gagcgaaaaa gtcttttgct tttttctgag aaccctaacg gagtgttaaa
     7861 ctttaattga gtattttcac agcccgcaga aaaaggtaaa tttaacacag atttaaaatt
     7921 aaacttatgc acgcaaaatt cggattattt gccgcgctgt tcctttcctt aagtatggtg
     7981 atcggcgcac aggcacaaga tcaggaacca aagccagagc gcaagcctgg tcactacaat
     8041 accaatcgat tcaaacaact ctacgaagag ttttcgaccc caaatcagta tcgttctgcc
     8101 agtggtgcgc caggaccagc ctattatcag cagcaagcgg attacaaaat gtccattacg
     8161 ctgaacgatc agcgttctca actttatgga gaagaaacaa ttacctacac caataattcg
     8221 cctgatgtgt tggcgtatct ttgggtacaa ttggatcaga acaaacgcgc aagagatagc
     8281 aaaagtcctt tgattgagcc ttcaggagtt ttcccggcaa aaatggccag cagttttgtc
     8341 agtgagtaca tgggtgaagg ttttgatggt ggattcaaaa ttgattgggt tcgtgatgaa
     8401 aaagggaacc cattaccaca cactgtgaac cgtaccatga tgcgtgtcga aatgccaaaa
     8461 gcattgaaac caggtgataa attcgttttt tcaatcaagt ggtggtataa cattcctgat
     8521 catactgtag accgcgcgcg tagcggttac gaagtttttg aagatgggaa taagggttat
     8581 gttattgctc agttctatcc tcgaatggcc gtttactctg acgtcgaggg ctggcaaaac
     8641 agtcaatttt ggggaagaga tgaatttgcc cttccctttg gtaatttcga agtttccata
     8701 accgttccct cggaccacgt tcttgatgcc accggggtac ttgtcaatcg aaaggaagtt
     8761 ttctcaaaag agatgatgcg ccgatatgaa ttggcaaaaa agagttacga taagcccgta
     8821 ttaattgtga cccaagatga agccgagcgc gcctctacag gatttgccac aggcagtaag
     8881 acttggaaat ttgacgcaaa aatggttcgt gattttggtt ttgcgacctc acggcgttat
     8941 atctgggaca tgatggccgt acgtattgga gatcgcgatg tcatggctgt atcggtttat
     9001 ccaccagaag gaaatccact ttgggaagac tggtctacgc gtgttgtggc cagtacttta
     9061 aagtcttact cgcgcatgac ctttgattat ccctaccata aagcaatttc tgtccatgcg
     9121 aaaaatcaag ggatggagta tccaatgatt tgttggaatt acggaagacc tgaaaaggat
     9181 ggcacctaca gtgatcgaac taaatatggg atgtttgggg taatcattca cgaagtgggc
     9241 cataactttt tccccatgat tgtcaatagt gatgagcgtc aatggacctg gatggatgag
     9301 ggaattaaca cctttgtgca gtacgttgcc gagcaggatt ttggtgctgc ttatcctgac
     9361 gccatcgcgc caaatgaaac ctatccgtca cgccgtggcc cagccaaagc catagtgaat
     9421 tatatggcgg gggatcaaga tcaattggct ccaatcatga ctaagggttt gaataccttt
     9481 aattttggcg ccaatggtta ttcgaaacca gccacaggac tcaatatttt gcgtaaaacc
     9541 ataatgggtg aagacttatt tgattatgcc ttcaaaacct atgctcagag atggatgttc
     9601 aaacacccaa cgcctgagga tttnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9661 nnnnnnnnnn nnnnnnnnnn naaacaccca acgcctgagg atttcttccg cagtatggag
     9721 gatgcctcag ccattgattt agattggttc tggcgctctt ggttctacac gacagactat
     9781 accgatatcg gcgtagcctc ggttaagaaa tactatgtga cacacaaaat gaatacagcg
     9841 attcgcgaaa tgatgcaggc gcgggggatg agcgagaatg atttgccccc actggtgtac
     9901 ttagttgagg agggtagtga ggattttgaa gaggatatgc gcacccaaac cttgaatgat
     9961 gttgttaccc ttcaagagtt tattatggat cgcatgactc cagaagagcg tgctggtcta
    10021 aaaatgccaa agtattttta cgaggtgact tttgaaaagc caggaggaat cccaatgccg
    10081 ataatcgccg attatgtcta tgctgatggt tcaaccgagc gcattaccta tccggcccaa
    10141 atctggcgat taaatgatgc ctctgtggct aaaatcatag cttcagaaaa ggaaatagtc
    10201 aaaatcgtca tcgatccaga tgaggagact gctgatatcg atacctcaaa taattcttgg
    10261 cctgctgaag aaacagtagg ggagttccag acctttaaaa gcaacattaa aggacagtaa
    10321 acggggttat atcatgccat tcgatggcct ttgagaattt gatttaaaag tttataaaag
    10381 ctccgatgat ttcatcggag cttttgttta tggtcctgtg aactttaata tctttgtact
    10441 atgattcttc cggtactttt tatcagcggt gcagaaatcg cttttatcgt ttttatcgtc
    10501 ctgatggtct ttggggcaga taaggtgccc gatattgccc gaggcctagg aaagaccatg
    10561 aagcaaattc ggcatgcaac agacgatata aaaaaggaaa taacaaaaag tgccgacaaa
    10621 caaggcattg acgttacgga cttcaaaaag agcattgatc aggtcaaaga cgatgtggat
    10681 caaattaccg gccccatcaa acgtcaattt taattaccgc tttcgcgcta gcgagagtcc
    10741 gtctctgatg ggcagtaata ctgtctggta ttcaggatgc gtttttagtt tgtgattaaa
    10801 ttcctgaagg accttggtgt ctaggtcatc tccttgagct ttttgggtta cttttccact
    10861 ccacaaaaca ttatcactga taagtaaacc cccagaacgt aacataggcg tgactaaggt
    10921 caagtaattg agataattcg atttgtccgc atcgataaag accaaatcaa atttttggtc
    10981 aagactcggg aggatttcag tggcattccc cagatgggtc acgatttgat gggctttacc
    11041 tgagcgatca aaatacttct gttgtaggcg tcttaactcg gcatttcggt caatcgtatg
    11101 taaaaccccg tctttgggca aaccttcggc cagacataaa gcggagtacc ccgtgtatgt
    11161 gccaatctct aggatggcct ttggggccaa taattgagca attaaactca aaagacgtcc
    11221 ttgaaggggc ccactgagca tgcgcggggc aagcacggtt tgccaggttt caagatttaa
    11281 ttcttttaag agctgaggtt cttcttgagt atgtccttca gcgtattgct caatatcgtg
    11341 cggtaaaaaa tccactaagc caatatttta tcgataagat tatttttggc ttcttgatcg
    11401 gggccaaaga gccactgcag gacattatct tcccaaatct catcgcattc ttgcgcgttg
    11461 aggagccctt gtttttgtgc taaatcaaga atcttaccgg gataagaaga ttgagctgca
    11521 ctttccattt ctccgagggg atagggatca tctaagccca taagcacttg cttactccct
    11581 tggtttttaa tcaaaagctc caaagaacca gtgtcatgaa ccagtgtatc aaaaaagata
    11641 tttttgtgac ctacactttt acgcggatga actttacctt caaaaaggtc aggtcggccg
    11701 tcaaaacctt gaattcttcg tccgagattt atttgggcca gttggccgcc gtgggcaaaa
    11761 caagtgcgca tgccgggaaa tttgtccgca tagccattta gggtataaaa gtgataggca
    11821 tcggcacatt gtgccagcat ccaaatcagg tgaaatcgcc aagcagtatt ttgaagtttg
    11881 ataaattttt caccgtcata ggggtgtatt tcaacggcta aattataaga agaggccaat
    11941 tcaaaaatgg gttcgttttc ggcgtcaaaa atactgcgcc aagtccctat tgtatccata
    12001 taatgggttg ggagacaaag taatcgcagg cccagctctt cgacacagcg ttcaatctcc
    12061 cataccgcgc cgcgcacaaa tccgggatgc actacaaaac cacaggtaaa tttactgccg
    12121 tgatcatgct gaatccgggc attgaaatca ttttgaaatc gcaaggcttg cttcatctct
    12181 tctaagcgaa gcccatttcc ataaagttgg gataagttta aaaccaccgc gtgatcgatt
    12241 ttataacgat ccatccattg tagtttttca tctaaaaaaa agcttgaatc agtgaccgga
    12301 cgactccaat ctttttgcag cataaatttc cgatccttat cgacccaaaa aattccttta
    12361 tccttcatga atgcaggaat ttcctcggga taggggagca gatgggaatg accgttaatg
    12421 cgcagttttc ttttcatgat tcaaacaatt agcgttggat atatggcttt tgcgatcggc
    12481 cgatgataaa gttacaaaga ttttgtgcgt ccaccatcaa tgggtagatt gatgccattg
    12541 atatatcctg cagcagggct acacaaaaag gcaataccaa aggctatttc ttcggcctga
    12601 gcaaaacggc gcgcaggcac gactgaggtc atgaaatctc gggcctgttc tgtggttttg
    12661 ttcaggcgct tggctgcaga attaacaatg tcctccaggc gatcggttgc cgtaaaaccg
    12721 ggaaggacat tatttacggt aatgccaaaa ggcccgagct ccacagataa ggttttactc
    12781 caattcgcta cagccccgcg aatcgtattg cttacgccaa gattttcaat gggttgtttc
    12841 actgaggtag aaatgacatt gataatgcgt ccataccccg cttgtttcat actcggcact
    12901 accccttgga caagaatttg attgcataaa agatgctggg caaacgctga ggcgtactgt
    12961 tgtggatctg cgtcaaaggc agggcctgag gcaggaccac cggtattgtt gatcaataag
    13021 tgaatttggt gctttttaac aagagcctcc acggtggatt taaaggcatg cgtatcccta
    13081 aagtcaacgg ctataaaatc gtgagtctga tttaattctc tcggcaatgc gtccaatgtt
    13141 tgcttgagct tttctggatt gcgtgcgaga aggacaatat ttgcgccaag gctggccagc
    13201 tcgattgcag tagccttacc gattccggcg gtactaccgc acactaaagc tgtttttccg
    13261 ttgagtctta attccatgtt taaaattatt gataacgctg tttcttatga aaccaatggg
    13321 tttaaatgtt gatattatta aattttcggg gcgtaactga tacagatatt tttgggttct
    13381 gtaaaaaagc gcaaagcttc aaatccgccc tcacgcccaa cgccacttga cttaacgcca
    13441 ccaaaagggg tgcgtagatc tcgattaagc catgtattga cccatacaat tcctgactca
    13501 agttgttgtc caaagcgcat ggaacgatct aaattcgagg tccataaact agccgaaaga
    13561 ccataagtta cgctattggc catctcaatt acttcttcct catggtcaaa aggcattaag
    13621 gtcactactg gtccaaaaat ttcttcctga ttcacacggc ataaatgatc attaacttcg
    13681 attacagttg gctgcagata ataaccctgg gggtgttctt ctattttggc ctcttgtcct
    13741 cccgttagaa gagttcctcc ttctttttgg gccaaggcga tataatctaa tattttttgt
    13801 tggtgatctt ttgagatgag ggctcctaaa tctacgtcct cgcttggtgg ccccacacga
    13861 agttccgcaa cccggctcac gaaatctctt ttaaaccgat cataaagagg gcgttccaca
    13921 aaaatgcggc ttccgcatag acaaatttga ccctgatttg caaaagaaga ttttatcgtg
    13981 gtctctaaca tgcgatcata agcacaatcc gagaaaatga tattgggatt tttccccccg
    14041 agttcaagcg ataatttttt aaacataggg gccgcgactc gggcgatatg tgccccggta
    14101 gccgtgcctc cagtaaatga gatggccttg atattggggt gtgcgacgat ggcttgcccc
    14161 gcactggacc ctgttccgtt tacaatattc agtacgcccg caggaagccc tgctttttga
    14221 caaagctcgg ccagtaaaaa agcggtaacc ggggtaagtt cgcttggttt tgccaccact
    14281 gtgttgccag cggctaaggc cggggcaatt ttccaagtaa aaagatagag gggaagattc
    14341 cacggcgaga tacatcccac cacaccaata gggtgtctca aagtaaaatt aatgctgttc
    14401 ttgcccacgc tttcatgggc ttcactggaa aattgggtca aggcatgagc aaaaaaccga
    14461 aaattactcg acgctcgggg gatgtccaca gttttagcca atgacaatgg ttttccgttg
    14521 tcgcgggatt cggcctgggc gagttcttct aaattctttt cgataaggtc tgcgatgcga
    14581 tataaaatgg cactgcgctg ctccagggtg gtgtgccgcc aggggccaaa tgcttgtttt
    14641 gccgcggcat acgcctgttc tatatcttgg gcatcgctct gagggagact cccgtatggg
    14701 actccggttg cgggttcaat gttctctaag gtcgctccac tgaacgcggg ttgaaattga
    14761 ccgttgatgt aattcagaac ctttgtcatt attgaagggg tttgtaggcc gtagctttta
    14821 tttcaatgag cagcaaagga ttgggtaatt gatgcacggc cacggtagtg cgtgccgggc
    14881 cagactcggc cttaaaatac tgagcataaa cttcattgta ccctgcaaag tcattcatgn
    14941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntaccctgc
    15001 aaagtcattc atgttgacca aaaaagtcgt taggtcgact aaatcttcga gccccgcacc
    15061 ctctgcacgg agatagtcct taatgttgtc taataccgca gcggtttgtt cttttatgtc
    15121 caggcgcatg gtgcccatag catcaacttt ctgggctccc gcgatggtat tgtctggttt
    15181 gcgggcactg gtccccgaga ggtacaagta atcaccgacc cgtttgatat gtggataagc
    15241 ccctcttggg gtggcttttc catcgattag tttattattg gtctgtgcca tatactacag
    15301 tttaattgtt ttgttctatt tgcgagagca ggttctgggt ccgctggtca attaaattga
    15361 gctgatcgtc cagttcttgg gattcattta atttattttg gcgcagcaat tgctcaatgg
    15421 ctttatcttg agcacgtcct cgggtcatcg cttggtgata actgagctca gggttgaagg
    15481 tgaccataga atacttactc tgatagtgct cagggcgttc ttgttctagg cgaacttcaa
    15541 tggcgcgttt acgctgaaat attggatctg cagtgtgctc tttcatttca tgaaaattat
    15601 ctaaagccag atcggcaatg gcgtcagcat cttttttgcg ttttttagca aattgttcaa
    15661 agagttcgct ccaaggacac actccataat ccatgagctg gtctaagacc aaaacatctt
    15721 caaacgaggc attcatcccc tgtccgtaaa aagggacgat ggcatgggcg gcatctccca
    15781 taatcagggc gttcccttga gcattccatg gaccgcattt aacagtcccc aggggaccgg
    15841 tcgggttttc ttgatattgc tgaatgatat ccggtatcag ttcaatgagc tcaggatatt
    15901 tttcttcgaa ataggcgcga atttgaccct cactttttat gtgatcaaag ccgtgagggc
    15961 ttcgggtatg actcataaat aacgtcacgg taaaactttt gtccaaattg ggtaaggcaa
    16021 tgatcatgtc ttctccacgg ggccatatat gtagggcgtc tgcgcgaagt ttatagtcgc
    16081 cctctgaatt tggggcaatg gacaattctt tatatccatg actgagccaa tccaacgaaa
    16141 agtcgaaatg ctccttttgc tgggcttgca gtgctttgcg cactatggaa cctgctccat
    16201 cacaaccaaa aataaccgct gcgtgaattt caaaaggttc tttttgatcg ctttgagtct
    16261 gggaagaacg ttgttcaaat ttagccagtc cgcgggataa atctagttca atacaagggg
    16321 cctcaaaatg caagcttaca ttgttcatag gctcaagggc atcgagcagt aaggcgttga
    16381 gtcccggtct tgaaattgaa tttattgcgg tatcgggatt accactgtaa gggctaaaaa
    16441 atgaatcacg cccttgttga tgaatcattc gaccacgcat ggggatactt atggccaatg
    16501 ccttttcatc catgccggcc atttttaaag ccgccaaacc tcggtcactc aaggctaagt
    16561 ttatggaccg tcccgcatcg agacgcgcgc gtctgaggtc agggcgtttc tccactagtg
    16621 tcacctgata tcctctttga gccagtctca aggccaacag gctgccgcat aaaccagcgc
    16681 ctataattaa tattttatcg tgtttgttca cagacattgg tttaagcgtt gaacaaaatc
    16741 atggacatct cgatagctgt tataaagcgg ggcgggagcc acccgaatga catcgggttc
    16801 gcgccaatcg ctaaccacac caagatgggt taatgcatcg tgaaggccac gatcac
//
LOCUS       DPUP01000204            6056 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_20424,
            whole genome shotgun sequence.
ACCESSION   DPUP01000204 DPUP01000000
VERSION     DPUP01000204.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..119)
                     /locus_tag="DHV98_07700"
     CDS             complement(<1..119)
                     /locus_tag="DHV98_07700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit R"
                     /protein_id="HCK06223.1"
                     /translation="MLALDFPPYRFRFKNSENKRLIFDPLRKIFVILTPEEWVR"
     gene            219..>1057
                     /gene="holA"
                     /locus_tag="DHV98_07705"
     CDS             219..>1057
                     /gene="holA"
                     /locus_tag="DHV98_07705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCK06224.1"
                     /translation="MALEQVNSIIKSIDAGKIAPIYALMGEEPYYIDVISQYIEDRLL
                     SEAEKGFNQMTLYGRDTKVEEIIEHAKRFPMMSERQVIIIKEAQDLARTIEQLADYAA
                     APQPTTVLVLCYKYKKLDARKKLLKSIRANGVVFESNKLYDNQIPDWIKKVLLGRGRH
                     IAPKAAQMLADFLGNDLSKINKELEKLAIVVPQSHEIDAALIEEHVGISKDYNNFELQ
                     SAIASGDKVRAYAIAQYFANNPKNHPVIMTIALLYNFYSKLLLYHSLSDKSIAPKVLG
                     INP"
     assembly_gap    1058..1155
                     /estimated_length=98
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1156..1341
                     /locus_tag="DHV98_07710"
     CDS             <1156..1341
                     /locus_tag="DHV98_07710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HCK06225.1"
                     /translation="LLGINPYFVKEYHTAAQIYPMKRVSGIITSIRRIDMKSKGLGTV
                     PLTPKDLLQELLLAIFQ"
     gene            complement(1358..1732)
                     /locus_tag="DHV98_07715"
     CDS             complement(1358..1732)
                     /locus_tag="DHV98_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014034521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HCK06226.1"
                     /translation="MKRYTDLGLLLLRAVLSLLMLTHGFPKLMRFVAGEFVLVGDPIG
                     LGGIVSSILVLAGEVVAPVLILIGLKSRAASVISAFTMAVAAFVVHGHDPIGKKELVL
                     LYMFGFIAIALMGPGSFSIDKK"
     gene            1934..>2761
                     /gene="menA"
                     /locus_tag="DHV98_07720"
     CDS             1934..>2761
                     /gene="menA"
                     /locus_tag="DHV98_07720"
                     /inference="COORDINATES: protein motif:HMM:TIGR00751"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     octaprenyltransferase"
                     /protein_id="HCK06227.1"
                     /translation="MNHIKYWIKAARLRTLPLSLSGVLLGCALAIDLWWQYPLFWWSM
                     ATTIGFQVLSNFANDYGDGVKGTDAKRKGEARMVASGLISAKQMKWAVWASGILTFFS
                     ATIVVFMAFGQQHYLLSFLFFNLTLLALWAAVRYTVGGDAYGYSGWGDIFVFAFFGLL
                     AVLGSSVLFIKHLDFYLIFPAITVGLLSVAVLNLNNMRDADQDREIGKRTLAVRMGFH
                     TAKIYHNILVLGALLSALIFAFLKAKELWSWCFVLAFIPLGIHLIRVQKISEPADFDA
                     "
     assembly_gap    2762..2796
                     /estimated_length=35
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2827..3885
                     /locus_tag="DHV98_07725"
     CDS             2827..3885
                     /locus_tag="DHV98_07725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008634583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HCK06228.1"
                     /translation="MTARYIPYTLKFKRPSGTSRGIMHTKETYFIVLKQGEKIGLGEC
                     GVLWGLSPDPQSDYVQKIAHVCQNINLGLEVLLQDLDAYPSIRIGLMTAFDSLNAQRP
                     MHLYPSEFTRGTQGGIGPGMSINGLIWMGDFSFMNTQIRERLSEGFRCLKLKIGAQDF
                     DQEWNLIRRLRAEYGPDDLEIRVDANGAFDRDTALEKLKKLSDLELHSIEQPIAVKQW
                     DEMAQLVQESPLDIALDEELIGLTSSEQKQQMLSQIKPDYIILKPSLIGGFDHSDQWI
                     NWAENLGIGWWVTSALESNVGLNAIAQYAATKAISMPQGLGTGSLYLNNIPAPLRVQN
                     AKLYYDLNQSWSFNSLNL"
     gene            3882..4838
                     /locus_tag="DHV98_07730"
     CDS             3882..4838
                     /locus_tag="DHV98_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease
                     domain-containing protein"
                     /protein_id="HCK06229.1"
                     /translation="MVMFIAQALKFKHDSWRYLLGIIVIFIIWQLGSIPLAIAVFAKV
                     LNQGGDLDALGDDPNALMQILSPNLTLFLMLFAFAIGLGGIWLWVKKVHEQSFTSLTT
                     AREKIDWSRFWFGFALIGGTILILTLVEYFWHPESFEVQFNWGPFIVLFVTATLMIPL
                     QTSFEEYYFRGYIMQGLGLMTKTRWVPLVFTSVVFGAMHAFNPEVDKMGSIIMIYYIG
                     TGFFLGVITLMDRGLELALGFHAGNNLIGALLVTADWTAFQTESILKDVSDPSAGMDT
                     VLPVFVIYPLFLLLMARKYNWTDWSERLFGTVETPKNKMGDN"
     gene            4858..5946
                     /locus_tag="DHV98_07735"
     CDS             4858..5946
                     /locus_tag="DHV98_07735"
                     /inference="COORDINATES: protein motif:HMM:PF00501.26"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-succinylbenzoic acid--CoA ligase"
                     /protein_id="HCK06230.1"
                     /translation="MSQERSQLWHPSFKLNGLSFDSLVSLHEFLDSMKIQGDPHERDL
                     AEFLKDWLSIEPFVVSYTSGTTGAPKKCLLSKEKMRLSAQTTGDFFQIGPGANALLCL
                     PLSFIAGKMMVVRALVLGWDLHVVAPTKDALTQYDSTYDFVALVPHQLAFSYRALDKV
                     KVLIVGGGVLPAQLEEKLQHSRVRAYATYGMTETLTHVAARRLNGVERSEHYSAMPEV
                     RFSSDARGCLEIHAPKLLEAPLVTNDLVQIIDNQNFVYLGRIDDMINSGGVKHAPESI
                     ERKLKQYLKGNFIISSLPHQTLGEQIVLVKDAHGPSEASIDEAVDHLTPLERPKLILK
                     LEELPVTDTGKYKRKELKAIILNQKNGL"
BASE COUNT         1639 a         1165 c         1380 g         1739 t
ORIGIN      
        1 cgcacccatt cctctggggt caaaatcaca aatattttcc gaagaggatc aaagatcaac
       61 cgtttgtttt cgctattttt gaaacgaaag cggtatgggg gaaaatcgag tgcaagcata
      121 gtgcaaagta agggattgtt ttcagttttt cacaatggtt tagtcctgaa acaagcgctg
      181 cagagagata tcccgcaaat ccatcgagtt taaattaaat ggctctagaa caagtaaatt
      241 caattattaa atcgattgac gcaggaaaaa ttgcgccgat ttatgcgttg atgggagagg
      301 agccatacta tattgacgtc atcagtcagt atattgaaga tcgcttattg tcagaggcgg
      361 agaaggggtt caatcaaatg accctgtatg gtcgtgatac caaagtagag gaaatcatag
      421 agcacgccaa acgatttccg atgatgtccg agcgacaggt catcatcatc aaagaggccc
      481 aagatctcgc ccgaactatt gagcaattag cggattatgc ggcagcacca caaccgacca
      541 cggttttagt gctctgttac aaatacaaaa aattagacgc cagaaaaaag ttattgaagt
      601 ccatcagagc aaatggggtc gtctttgaaa gtaataagct ctacgataat caaatccccg
      661 attggattaa gaaagtgtta ttgggtcgag gacgtcatat cgcgccaaaa gcggctcaaa
      721 tgctcgcaga ttttcttggg aatgatttaa gcaaaatcaa taaggagctg gagaaattag
      781 ccatagttgt accgcaaagc catgaaattg atgccgcctt gatcgaagaa catgtgggta
      841 tcagtaagga ttataataat ttcgaactac aatcggccat tgcctcgggc gacaaggttc
      901 gggcctacgc tatagcgcaa tattttgcga ataatcccaa gaatcacccg gttataatga
      961 ccattgcctt gctttataat ttttattcaa aactcttgtt gtatcattct ttgagcgata
     1021 aatcaattgc gccaaaagta ctgggcatca atccatannn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnctact gggcatcaat ccatattttg ttaaagaata tcacacggcg
     1201 gcacaaattt atcctatgaa acgggtttca gggatcatca cctcaattcg tcgcatcgac
     1261 atgaaaagta aaggattggg taccgtgccg ctcaccccga aagacttatt acaagaactt
     1321 ttattggcga tcttccaata aggctaaaag cgccctttta ttttttgtca atagaaaagg
     1381 atcctggtcc cattaatgca atagcgataa agccgaacat ataaagtagg accaattctt
     1441 ttttcccaat cgggtcatgg ccatggacaa caaaggcagc tacggccatg gtaaaggcac
     1501 taatgaccga tgcggcccgc gatttgagcc caattaaaat aagcacagga gcgacgactt
     1561 cacccgctaa aactaaaatt gaggagacaa tgcctccaag tccgatgggg tctcccacca
     1621 aaacaaattc acccgcgaca aagcgcataa gcttcgggaa tccgtgggtg agcataagta
     1681 gagacaatac ggctctcagg agcaaaagac caagatcggt gtagcgtttc atagattggt
     1741 gtttaagtgg tttaaatata aatgtttttt gacaactgga gcatgaattt aagggccata
     1801 atactggggt gataaaagta ttggggctaa gtttattctt gaggatataa cattaggaaa
     1861 gccctcgaat tactcttatt tttgtctgtc ttatcttatg atcaggttaa ggctgcacgt
     1921 ttaacccaac tttatgaatc atataaaata ttggataaag gctgctcgat taaggacttt
     1981 gcctttatcc ctctctggtg tgctgttggg ctgtgcttta gccatagatt tgtggtggca
     2041 atatcctttg ttttggtggt ctatggccac gacaattggt tttcaagtcc tgtctaattt
     2101 cgccaatgac tatggcgatg gggttaaggg aactgatgcc aaaaggaaag gggaagcacg
     2161 gatggttgct tcgggattga tttcggcaaa acaaatgaag tgggccgtgt gggcttcagg
     2221 aatattgacc tttttttcag cgactattgt ggtgtttatg gcctttggtc agcaacatta
     2281 tctcctatca tttttatttt ttaacctaac cctattggcg ctatgggcgg cagtgcgcta
     2341 cacagtgggc ggcgacgctt atggttattc aggttggggc gatatttttg tgtttgcgtt
     2401 ttttggtcta ttggccgtgc tgggcagttc tgtcctgttt ataaaacatt tggattttta
     2461 tttgatcttt ccagccataa ccgtggggct gctcagtgtc gcggttttga acttgaacaa
     2521 tatgcgcgat gcagatcaag accgtgagat tggcaagcgt actttggcgg ttcgcatggg
     2581 gttccatacg gcaaagattt atcataatat tttggtgctg ggcgcgctgc tcagtgcgct
     2641 aatatttgca tttctgaagg ccaaagaact atggagttgg tgctttgtct tggcatttat
     2701 tcctcttgga attcatttaa ttcgcgttca aaaaatttcg gaacccgctg atttcgatgc
     2761 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncttg ctcatggctt tgtttttttg
     2821 atgataatga ccgctagata tattccctat accttaaagt ttaaacgccc tagcggtacc
     2881 tctagaggga taatgcatac caaagaaacc tattttattg ttttaaaaca gggcgaaaaa
     2941 ataggcctag gcgaatgtgg tgtcctttgg gggttaagcc ctgatcctca atcggattac
     3001 gtccaaaaaa tagctcatgt ttgccaaaat ataaaccttg gtcttgaggt tctactgcaa
     3061 gatttggacg cctacccttc aatacgtatc gggctgatga cggcatttga ttcactaaac
     3121 gctcagaggc caatgcattt atatccatcg gaattcacca ggggcaccca gggaggaatt
     3181 ggtcccggaa tgtctataaa tggtttgatc tggatgggtg atttttcctt tatgaacacc
     3241 caaattaggg agcgactcag cgaagggttt cgctgcctca aattaaaaat aggcgcccaa
     3301 gattttgacc aagaatggaa tctaattcga cgtctcagag cagaatatgg ccctgatgat
     3361 cttgaaattc gcgtcgatgc gaacggggcc tttgacagag acactgcttt agagaagcta
     3421 aaaaaattaa gtgatcttga gctgcattcc attgagcagc ccatcgccgt taagcagtgg
     3481 gatgagatgg cccaattggt tcaggaatcg ccgcttgata ttgctttgga tgaagaactt
     3541 atcgggttaa cctcatcgga gcaaaaacag caaatgttgt cacaaatcaa gccagattac
     3601 attattttga agcccagttt gattgggggc tttgatcatt cagaccagtg gattaattgg
     3661 gcagaaaact taggcatagg ctggtgggtg acttcggctc ttgaaagtaa tgttggcctg
     3721 aatgctattg cgcagtacgc ggcgaccaaa gccatttcta tgccccaagg actgggcaca
     3781 gggagtctgt atttgaacaa tattcccgca ccgctaaggg tgcaaaatgc caaattgtac
     3841 tacgatttaa atcagtcttg gtcatttaat tcattaaatt tatagttatg tttattgctc
     3901 aagcattaaa atttaagcat gattcttggc gctatttgct gggaattatt gtcattttta
     3961 ttatctggca attgggatct atcccactag ccatcgcagt ttttgctaaa gttttgaatc
     4021 aaggggggga tttggacgcc ttgggcgatg atcctaatgc cctcatgcaa atcctttcgc
     4081 ctaatctcac cttatttttg atgctttttg catttgctat tggcttggga ggtatttggc
     4141 tctgggttaa aaaggttcac gagcaatcgt ttacttcact cactactgcc cgagaaaaga
     4201 tcgattggtc tcgattttgg tttggtttcg ccctcattgg aggaaccata ttgattttga
     4261 ctttggtaga gtatttttgg catcctgagt cttttgaagt ccagtttaat tggggtccgt
     4321 ttatcgtttt attcgtcact gcaacgctaa tgatcccttt gcaaacctct tttgaagagt
     4381 attatttcag gggttacatc atgcaaggtc ttgggcttat gaccaaaacc cgatgggtgc
     4441 ctttggtgtt tacttctgtt gtatttggtg cgatgcatgc ctttaatccg gaggtggaca
     4501 aaatgggaag tattatcatg atttactata tcggaaccgg gttcttcctc ggagtaatca
     4561 ccctcatgga tcgagggctt gagttggctc tagggtttca tgcgggcaat aatcttatcg
     4621 gtgctttatt ggtcactgcg gattggacgg cctttcaaac ggaatctatc cttaaagatg
     4681 tttcagatcc aagcgccggt atggataccg tactccctgt gtttgtgatt tatccacttt
     4741 ttttattgtt gatggcgcga aaatataatt ggaccgattg gtcagaacga ttatttggaa
     4801 cggtggaaac gccaaaaaat aagatggggg acaattaatc cctgttgaag aacaaaaatg
     4861 agtcaagagc gcagtcaatt atggcatccg agttttaagc taaatggctt gtcatttgat
     4921 tcgttagtga gtcttcatga atttttggat tcaatgaaaa ttcaaggcga tccacacgaa
     4981 cgcgatttgg cagaattctt aaaggattgg ttatccattg agccctttgt tgtctcttat
     5041 acttcgggaa ctacaggcgc ccctaaaaaa tgtcttctga gtaaagaaaa aatgcgtttg
     5101 agtgcacaaa ctactggaga tttttttcaa ataggaccag gggccaatgc ccttttgtgt
     5161 ttgcctttgt cctttatcgc cggaaaaatg atggtcgttc gtgctttggt ccttggttgg
     5221 gatcttcacg tggtggcacc gacgaaggat gccctgactc agtatgactc cacttacgat
     5281 tttgtcgcat tagtcccgca tcaattggct ttttcatatc gtgcgctcga taaggtcaaa
     5341 gttttaattg ttggcggcgg ggtactcccg gcgcaattag aagaaaaatt acaacacagc
     5401 cgggtaaggg cttatgccac ctatggaatg actgagacct tgacccatgt ggctgcgaga
     5461 agactcaacg gcgtggagcg ttctgagcac tacagtgcca tgcctgaggt ccgattttca
     5521 agtgatgctc ggggatgttt ggagattcat gcgccaaagt tattggaggc cccattagtg
     5581 actaatgatt tagttcaaat cattgacaac caaaactttg tttatttagg acgcattgat
     5641 gatatgataa attctggtgg ggtgaagcat gctccggaat caatagagag aaaattaaaa
     5701 cagtatttaa agggcaattt tatcatcagc agtctaccac atcaaacttt aggggaacaa
     5761 atcgtattgg taaaagacgc ccacggccca tcggaagcat ccatagacga ggccgtcgac
     5821 cacttaacgc ccttagaacg tcccaaatta attctcaaat tagaggagtt gcctgttacc
     5881 gatacgggta aatacaagag aaaggagctc aaagcgatta tcctaaatca aaaaaatgga
     5941 ttatgaaaaa atattgttta tccctgaatt taacccagtt attcctgctt ttattctttt
     6001 ggatgccgtt agggcttcag gcgcagattt tgaatgaaaa agagcgagcc gaacgc
//
LOCUS       DPUP01000205            7385 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11000,
            whole genome shotgun sequence.
ACCESSION   DPUP01000205 DPUP01000000
VERSION     DPUP01000205.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7385)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7385)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7385
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..149
                     /locus_tag="DHV98_07740"
     CDS             <1..149
                     /locus_tag="DHV98_07740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06231.1"
                     /translation="SGRHLNGNYTIFGQVTQGMDVVETIANLPADAGEWPKSNVYIEV
                     SIDE"
     gene            197..1129
                     /locus_tag="DHV98_07745"
     CDS             197..1129
                     /locus_tag="DHV98_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010518877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HCK06232.1"
                     /translation="MTITQLKYVLAVAEHQNFTKAAEHTFVTQPTLSMQIQKLEEELD
                     ITIFDRSKKPIALTSVGQKIVTQAKLIVDEATRMQDVVDQEKGFIGGPFKLGIIPTVM
                     PTLLPMFLKTFTKRFPKVQLSIEELSTPELIARIADGHLDGAIAATPLGDERLKERAL
                     YYEPFVGYIPEHHRLHENKSIQNSDLDLEDILLLQDGHCFREGVLNLCQANKRSKKEG
                     FKLTSGSFETLIKLSHEGLGMTLLPYLHTLDLDETRAKNIRHFEAPVPAREISLIYPS
                     SALKMHIIEALHGVISGIIRGAIKFQEVKIISPV"
     gene            complement(1179..>1480)
                     /locus_tag="DHV98_07750"
     CDS             complement(1179..>1480)
                     /locus_tag="DHV98_07750"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="thioesterase"
                     /protein_id="HCK06233.1"
                     /translation="VQGMAAELACGMLVMQAVRQQNHSISMLLVGTRATFIKKARGRI
                     EFVCQDGLAAQGGVEDCLVNTDGVQFDLFVTGRDAQGEIVSEFVFNWSVKARMKP"
     assembly_gap    1481..1641
                     /estimated_length=161
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1957..2040
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2100..2432
                     /locus_tag="DHV98_07755"
     CDS             2100..2432
                     /locus_tag="DHV98_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HCK06234.1"
                     /translation="MNIENTKAQMRKGVLEFCILSVLQDQEAYTSDLLQTLKSAKMLV
                     VEGTVYPLLTRLKNSGLLQYRWEESTSGPPRKYYAITPEGQEFLNELKDTWIELQNAV
                     DVLTQSKK"
     gene            2435..4102
                     /locus_tag="DHV98_07760"
     CDS             2435..4102
                     /locus_tag="DHV98_07760"
                     /inference="COORDINATES: protein motif:HMM:PF04024.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06235.1"
                     /translation="MNKTININLGGTFFHIDENAYNHLRSYLEAVRATLSPEDSIAEI
                     MDDIEARIAELFNESISNKDQVITITRVKEVIEIMGQPEAFDPDNEDPQPNAHTAQSQ
                     HKAPRQLFRDEENKYLGGVASGLGHYLGLDCLWIRLIWLMLFFISSGTFFMIYLLFWI
                     LVPAAKTTADKLRMKGEPINISNIEKRVKEGYEKFSDNVKSVDYDKYGNQVKRGSNRI
                     VEVVGNLLKGTFTVLARLLGVLMLIFSVSALLGLAFGLFSAGSLEFWGQADLIEYYQA
                     ISLAQIPFWALLTIVFLAVGLPFIVLFIVGIKLLIPNLKSIGWPAKISLFVLWIASIL
                     ALIFFGAKHASFTSVNGQFQREIPLPITKNDSLTLTMNQSTLSARSLERDDNFVIRMD
                     AENNPVILTNNVRLIVRATPKAQGFIIVDSYADGASLDEAQQKAMQINYEIQYTQGIL
                     ELDPYLTTALENKYRDQHVEVIVYLPTGSVLWADYNTNSYHRNTKAYNDLLDSGYEGH
                     YLKVMDRELKCLDCASNDHDEDSKDPDDIKNINIEIQGNIKTKVNRA"
     gene            4114..4581
                     /locus_tag="DHV98_07765"
     CDS             4114..4581
                     /locus_tag="DHV98_07765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06236.1"
                     /translation="MVHKIILAAAFIAISFSAQAQKLNEKELMGSWHMVIDIDAAIKE
                     SQKDLNLFEKMIVGSVSGFVDQVLEMVDITIVFMPKGKAVLTVDGPEVQEKETTQLTW
                     QHDPSGGIIIDDYESDQAQVDFDNIWRLEGDRLQSYEPDGTLEKHVYMIRKEK"
     gene            complement(4625..5572)
                     /gene="trxB"
                     /locus_tag="DHV98_07770"
     CDS             complement(4625..5572)
                     /gene="trxB"
                     /locus_tag="DHV98_07770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HCK06237.1"
                     /translation="MSSTVEHIKCLIIGSGPAGYTAAIYAARADLNPVLYTGLEPGGQ
                     LTTTTEVDNFPGYPEGVDGPTMMVQLQQQAERFGTQVRIGMVTHVEFSSEVGGVHKVV
                     VDNTTHLTADTVIISTGATAKYLGLPSEQKLRGGGVSACAVCDGFFYRGQDVAIVGAG
                     DTAAEEATYLANICKSVTMLVRRDEMRASKAMQHRVFGMKNIDVRFNTEVDEVLGDTV
                     VEGLRMVNNETGEKEEIAITGLFIAIGHKPNTDLFKGQLDMDDTGYLITKGKSTKTNL
                     PGVFACGDVQDKEYRQAVTAAGTGCMAALDAERYLAGVE"
     gene            complement(5837..6436)
                     /locus_tag="DHV98_07775"
     CDS             complement(5837..6436)
                     /locus_tag="DHV98_07775"
                     /inference="COORDINATES: protein motif:HMM:PF13386.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06238.1"
                     /translation="MILYHLGRLFTYAVLGLLLGILGQGLALMGVLQYFSIAMGIALI
                     FVVVIPRWAPYLTQFNGILSPTWRALRPFFQELLSRKSWDAYLGIGMLNGLLPCGLVY
                     MALIGSLVQTNFLDSIGFMLFFGLGTIPLLSITVYAVQWIPKRTVQKLYGYLPVMIFV
                     LGVLLVVRGLGLNIPYLSPEFSPETVQSMQQCAPLFVEH"
     gene            6422..6724
                     /locus_tag="DHV98_07780"
     CDS             6422..6724
                     /locus_tag="DHV98_07780"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06239.1"
                     /translation="MIEDQKRLSKLQKDQPLSQIADFYKWIDYRTIDIAMGYENFKKF
                     YLNHQWAFTDQTKKIILHIGTEIIKKFSKNNPDPGLMKTRLEILFKATNTHSSPYQ"
     gene            6743..7042
                     /gene="trxA"
                     /locus_tag="DHV98_07785"
     CDS             6743..7042
                     /gene="trxA"
                     /locus_tag="DHV98_07785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HCK06240.1"
                     /translation="MPSSFNDLINSNPLVLVDFHATWCGPCKMLAPILIQAKEVLQDA
                     VKIIKIDVDKNPAMAAKYEVRGVPTMILFKNGQPVWRQSGVLQAQAIVHTVQSHV"
     gene            complement(7045..>7385)
                     /locus_tag="DHV98_07790"
     CDS             complement(7045..>7385)
                     /locus_tag="DHV98_07790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06241.1"
                     /translation="WVNAHDFELLRIPAHKVNLHGDFTLSDSEKLSLRWTWADARRDQ
                     FFDSSSFTNQNISLNPYHWVDVVYGVRLSPALNAQLSVTNLLNQEVQPLYRYSGQGRN
                     LLLSLTWQSQ"
BASE COUNT         2223 a         1588 c         1443 g         1886 t
ORIGIN      
        1 tcagtgggcg tcatttaaat ggtaattaca ccatttttgg gcaagttacc cagggtatgg
       61 atgtcgtaga aaccatcgct aatttgcctg ccgatgcagg agaatggcca aagtctaatg
      121 tctacattga ggtctcaatc gatgagtaag catcaatttt acttatagaa tttgtatatt
      181 tacacaaatt ttactgatga ccattaccca attaaaatat gttctagccg tagccgagca
      241 tcaaaatttc accaaagcag ctgagcatac ttttgtgacg caacctacct tgagtatgca
      301 aattcaaaag ctcgaagaag agctagacat tacgatcttt gatcgctcaa aaaaaccaat
      361 tgctttaacc tctgtaggtc aaaaaattgt cactcaagcc aaactaattg ttgatgaagc
      421 cacgagaatg caggatgtcg tggatcagga aaaagggttt atcggcgggc cttttaaatt
      481 gggaatcatt cctacggtta tgcctaccct gttgcccatg ttcttaaaaa cctttaccaa
      541 acgcttcccc aaggtacagc tgagtattga agaactatca actccagaac tcattgcccg
      601 cattgctgat ggtcacctag acggggccat tgcagcaacc cctttgggag atgagcggct
      661 gaaagaacga gccctctatt atgagccttt tgtaggctat attcccgagc accacaggct
      721 tcatgaaaat aaatcaattc aaaacagtga tttggatttg gaagatatac tattgctcca
      781 ggacggccac tgttttagag aaggggtatt aaatttatgt caagccaata aaagaagtaa
      841 aaaagagggg tttaaattga ccagtggtag ttttgagacg ctgattaaat tatctcacga
      901 aggccttgga atgaccctac tcccttattt gcatactcta gatttggatg aaacgcgcgc
      961 gaagaatatc agacattttg aagcccctgt tcctgcaagg gagatttcgc tgatttaccc
     1021 aagtagcgct ttaaagatgc atataatcga agccttacac ggtgtgattt cgggaattat
     1081 ccgtggggca attaagtttc aggaggttaa aattattagc ccggtttaag actttttacc
     1141 caactaaact ctttagccct cggggccatt tggaggcgct aaggtttcat acgcgccttt
     1201 accgaccaat taaaaacaaa ctcagaaacg atttcccctt gggcatcacg gcctgtaaca
     1261 aataggtcaa attgtacccc atcagtgttc acgagacagt cttctacacc accttgtgcg
     1321 gccaaaccgt cttggcatac aaactcaatt cggcctctcg ccttcttaat gaatgtcgct
     1381 ctagtcccca ctaaaagcat tgaaatcgaa tggttttgtt ggcgcaccgc ttgcatcacc
     1441 agcatcccgc aggccagctc tgcggccata ccctgcacgg nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn ngattaatcc accggtggcg tacgctaaca caggccttgt
     1681 gctgatcaat ggctttaagc cgcaccccac aaataaatgc cgcagggagt tttagaagca
     1741 taaagctatt gacttgaaat ggggtgacta atttcataag gacaagatag agagattttg
     1801 attagaacac gaattttcga tctcgattta accacggttt tgacttgctc tgagcttagg
     1861 ccctatcctg aacgtgacga tttgttgggc gtggaattgg ccacaaattg atcctaaagc
     1921 caaatcgcca aatgttaaaa ttataataat atagtannnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 tactatgcat tgcaaaatac catccataag atatatattt gccatgtaaa atagttaaaa
     2101 tgaatattga aaacacaaag gcacaaatgc gaaagggcgt actggagttt tgcatcttat
     2161 ccgtacttca ggatcaagag gcttatacta gtgacctttt gcaaacccta aaatcggcca
     2221 aaatgctcgt ggttgaaggc acggtatatc ccctactcac acgattaaaa aatagtggac
     2281 tcctgcagta tcgctgggaa gagtccacaa gtggcccacc gagaaaatac tatgccatta
     2341 ccccagaggg acaagagttt ctcaacgaat taaaagacac ttggatcgaa ttacaaaatg
     2401 ctgttgacgt cctaacccaa tcaaaaaaat agtcatgaac aaaacaataa acatcaattt
     2461 aggcggcacc ttctttcaca tcgatgaaaa cgcctacaat catttaagga gttatcttga
     2521 ggccgtgcgc gctaccttaa gtcctgaaga ctcgattgcc gagatcatgg acgatatcga
     2581 agcccgaatc gcagaactct ttaatgaatc gatcagcaat aaggatcagg tcatcacgat
     2641 cactcgcgtt aaagaggtta ttgagatcat gggacaacct gaggcctttg accctgataa
     2701 tgaggatcct cagcccaatg cacacactgc tcaaagtcag cacaaagccc caagacagct
     2761 ctttcgagat gaggaaaaca aatatctcgg tggtgttgct tcgggcctcg ggcattatct
     2821 cggcctagat tgcctttgga tcagattaat ctggcttatg ctgtttttta tctccagcgg
     2881 aactttcttt atgatatacc tcttgttttg gattttggtt ccagcggcca aaacgactgc
     2941 agacaagtta agaatgaagg gagagccaat caatatctcg aatatcgaga aaagagttaa
     3001 agaaggttat gaaaagttta gcgataacgt gaaatcggtc gactacgata aatacggaaa
     3061 ccaggtaaaa cgagggtcta accgtattgt ggaagtcgtt ggtaatttgt taaaaggaac
     3121 ctttaccgta ttagcgagac tccttggggt attgatgctc atatttagtg tgagcgcatt
     3181 actcgggctc gcctttggac tcttttctgc cggatctctt gaattttggg gacaagcaga
     3241 tttaattgaa tattaccagg caatttcttt ggctcaaatt cctttctggg ccctgctgac
     3301 tatcgtgttt ttggccgtag gattgccttt tatcgttttg tttatcgtag ggatcaaact
     3361 actgattcct aatttaaagt ctataggctg gcccgcaaaa atatccctat ttgtgctttg
     3421 gattgcttcc attttagcgc tcatattttt tggggcgaaa catgcaagtt tcacttctgt
     3481 aaatggacaa tttcaaaggg aaatacccct acccattact aaaaatgaca gtttgacctt
     3541 aaccatgaat caaagtacac tttcggcgcg gtcgctcgaa cgagatgata attttgtcat
     3601 tagaatggat gccgaaaata accctgtaat tttaaccaat aatgtgcgtc tcatcgtacg
     3661 cgctacacct aaggcacagg gttttataat tgtcgacagt tatgcggatg gcgcttcttt
     3721 agatgaagcg caacaaaaag ccatgcaaat taattatgaa attcaataca ctcagggcat
     3781 tttagaactt gatccttatc tcactacggc gttagagaat aaatatagag atcaacatgt
     3841 tgaagtaatc gtttatcttc ccacgggatc agtcctttgg gccgactata acaccaattc
     3901 atatcacaga aacacaaaag catataacga tcttttagat tctggctacg agggtcatta
     3961 cctaaaagta atggatcggg aattaaaatg tttggattgt gcatccaatg atcatgatga
     4021 agattccaaa gaccccgacg acatcaaaaa catcaatata gaaattcaag gaaacattaa
     4081 aacaaaagta aatcgcgctt aatccatcca attatggttc ataaaattat actcgcagcg
     4141 gcattcatcg ccattagttt cagtgctcag gcacaaaagc ttaacgaaaa agaactcatg
     4201 ggatcttggc atatggttat agatatcgac gccgcaataa aggaatccca aaaagactta
     4261 aatctatttg aaaaaatgat cgtaggatct gtttctgggt ttgtcgatca ggtcttggaa
     4321 atggttgata tcacaattgt atttatgcca aagggaaaag ccgttttgac cgtagacggg
     4381 ccagaggtac aggaaaaaga aacgacccaa cttacttggc aacatgatcc atcgggtgga
     4441 attataatcg atgattacga atcagatcag gcccaagtag attttgacaa tatatggcgc
     4501 ctagagggag accgattaca atcttatgag cccgatggca ccctggaaaa acacgtctac
     4561 atgatccgaa aagaaaaata gagcgctctc gagaaactca cgattttttt agtctgcatc
     4621 aagattattc cacaccggcc aaatagcgct ctgcatcgag tgctgccata catcccgtac
     4681 ctgcagcggt aacggcctga cggtactcct tatcttgaac atcaccacag gcaaatactc
     4741 caggcaaatt cgttttggtg gatttgcctt ttgtgattaa ataacccgta tcgtccatat
     4801 ctaattgacc tttaaataaa tcggtgtttg gtttatgacc aatagcgata aataaacccg
     4861 taatggcaat ttcttctttt tcgcctgttt cattattgac catgcgcaac ccctcgacta
     4921 ccgtatcgcc aagcacctca tcgacctcag tattgaatct aacatcgata tttttcatgc
     4981 caaatacgcg gtgctgcatc gctttagaag cacgcatttc atcgcggcgc accaacatgg
     5041 tcactgattt acagatgtta gccagataag ttgcttcttc ggctgcagtg tcccctgctc
     5101 caactatggc cacatcctgg cctcggtaga aaaacccgtc acaaacggca caagccgaaa
     5161 caccaccacc acgtaatttt tgttcactgg gcaaccctaa gtacttcgcg gtggccccgg
     5221 tagaaataat tactgtgtcc gcagttaggt gagtcgtatt gtctacgacc accttatgca
     5281 cgccaccaac ttcactgctg aattccacat gagtgaccat accgattctg acctgagttc
     5341 cgaaacgctc tgcttgttgt tgtaactgaa ccatcatggt cggtccatcc acaccctcag
     5401 gataacccgg gaaattatcg acctctgttg ttgtagtcaa ctgcccccct ggctcaagtc
     5461 cggtataaag taccggattt aaatcggcgc gtgcggcgta tatggccgca gtataccctg
     5521 caggtcctga tcctataatc aaacatttga tgtgttctac tgtgctggac atgacgtctg
     5581 aagttttaaa atatgagcta cgaaaataag gacttttcca agcacccacc gagaaaagtt
     5641 attaagatta gcccgcgaga ttgtttatta atccccggga gtgttactct tgatctttag
     5701 atgatccgct aaagaccaaa taaagcgccg tagcgattaa cacaacacaa accaaggcaa
     5761 aaagtccgat catccatacg ccattggtcc aatcaactaa aggtaaaaaa agtgggttca
     5821 tatatctaaa atagagttaa tgttcgacga ataatggagc acattgctgc atactttgaa
     5881 ccgtctctgg tgagaattcg ggggataaat agggaatatt taaacctaga ccgcgaacca
     5941 ccagcaatac ccccaggaca aaaatcatta cgggaagata tccatataac ttttgaacag
     6001 tccttttagg aatccattgg acggcataaa cggtaatcga aagtaaagga atagtcccca
     6061 aaccaaaaaa tagcataaag ccaatagaat ctaaaaagtt cgtttgcact aaagacccga
     6121 ttaatgccat ataaaccagt ccgcaaggca ataaaccatt gagcatccca atgcctaaat
     6181 aggcatccca gcttttacgc gataagagct cttgaaaaaa tggtcttagg gcacgccagg
     6241 tgggacttaa aataccattg aactgggtca aataaggcgc ccatcttgga ataacaacca
     6301 caaaaatcaa agcaataccc atggcaatag aaaaatattg caagaccccc ataagggcga
     6361 gaccctggcc caaaataccc aacaataagc ccagaactgc gtaagtgaaa agacgaccta
     6421 aatgatagag gatcaaaaac gtctaagcaa attacaaaaa gaccaaccat tgtcccaaat
     6481 tgcggatttc tacaagtgga ttgattatcg gaccatcgac attgccatgg gttatgaaaa
     6541 ctttaaaaag ttttacctaa atcaccaatg ggcttttaca gaccaaacaa aaaaaataat
     6601 tttgcatatc ggcactgaaa tcataaagaa attttcaaaa aacaacccag atcccggact
     6661 gatgaaaaca cggctagaaa tactttttaa agccacaaat actcattctt ccccatatca
     6721 ataatttgta aaacaataga ctatgccaag ctcattcaat gacttaatca attcaaaccc
     6781 tttggttttg gtcgattttc acgccacctg gtgtgggcct tgtaaaatgc ttgcccccat
     6841 attgattcaa gcaaaagaag tccttcaaga cgccgttaag atcattaaaa ttgatgttga
     6901 taaaaatcct gcaatggctg caaaatatga agtacgcggg gttccgacta tgattttatt
     6961 taaaaatggg caacccgtat ggcgccaatc tggggttctt caggcccaag ctattgtcca
     7021 taccgttcaa tcacacgtct aaaattactg agattgccat gtcaaactca acaataaatt
     7081 gcgcccctgg ccgctatatc gatacagtgg ctgcacctct tgattgagta ggttggtcac
     7141 actcaattgc gcattgagcg cgggacttag tctcacacca tacaccacat caacccaatg
     7201 atagggattt aaactgatgt tttggttggt aaaactactc gagtcaaaaa actgatcacg
     7261 gcgcgcgtcc gcccaggtcc aacgcaaact gagtttttcc gaatcactga gggtaaaatc
     7321 gccgtgaagg ttgactttgt gggcgggtat gcgcagcagt tcaaaatcat gagcgttgac
     7381 ccagg
//
LOCUS       DPUP01000206           13722 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16927,
            whole genome shotgun sequence.
ACCESSION   DPUP01000206 DPUP01000000
VERSION     DPUP01000206.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 13722)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 13722)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13722
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..227
                     /locus_tag="DHV98_07795"
     CDS             <1..227
                     /locus_tag="DHV98_07795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06242.1"
                     /translation="DVSLSYAMPKPLIGKTMSVQVLANNIFSAVYSSNGYYYTYDDDF
                     SVPDTITTIEGTGYYPQALFNILAGVTLGF"
     gene            complement(224..616)
                     /locus_tag="DHV98_07800"
     CDS             complement(224..616)
                     /locus_tag="DHV98_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006988772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06243.1"
                     /translation="MSCGGEDDTRLINNPYLNPIPVSLNLNLNLPQYNLLKYPGNFVV
                     LSNQGVRGVVVYNVNNSLYTAFDLSDPNHSPNNCSTMTLQGIVATCPCSDGNSYDLVT
                     GQHQSESQAYPMLPYRAQRNGDVLIISN"
     gene            851..1327
                     /locus_tag="DHV98_07805"
     CDS             851..1327
                     /locus_tag="DHV98_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HCK06244.1"
                     /translation="MSKVSYYTAEGLKKLRDELDRLRDVERPKASQAIADARDKGDLS
                     ENAEYDAAKEAQGLLELRIAKLEETLAGARLIDESQLDTSKVLVHSTVKIKNTVNNME
                     MTYKLVAQSEADLKSGKISVDSPIGKGLLGKKVGDIASISVPNGTIALEIVSXTHW"
     gene            1305..1421
                     /locus_tag="DHV98_07810"
     CDS             1305..1421
                     /locus_tag="DHV98_07810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06245.1"
                     /translation="MFLXPIGKGLLGKKVGEMAAIQVPNGVVNFEIIHITRD"
     gene            1424..1819
                     /locus_tag="DHV98_07815"
     CDS             1424..1819
                     /locus_tag="DHV98_07815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006266773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HCK06246.1"
                     /translation="MASIFTQIIQGNIPCYKVAENDDFLAFLDINPNAKGHTLCIPKI
                     EVDKLFDLDQETYHGLMEFSRKVAKALEKTVPCKRIGMSVIGLEVPHVHVHLIPLNHM
                     EDIRFIQKTEMSAQQLEGLAQAIASHFEG"
     gene            complement(1794..2153)
                     /locus_tag="DHV98_07820"
     CDS             complement(1794..2153)
                     /locus_tag="DHV98_07820"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06247.1"
                     /translation="MIVKEFVIHRADINNHCPNCFSARGMVFSFIQNQKENSWVIITA
                     AEIQEQLFCQHCSQEIYPGSWDEAIERVYAYQRKCFQPMPSEVRLKKKGKIAVGVALM
                     FLLSGVGLWISLQNGWL"
     gene            complement(2153..3391)
                     /locus_tag="DHV98_07825"
                     /pseudo
     CDS             complement(2153..3391)
                     /locus_tag="DHV98_07825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386025.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
     assembly_gap    2637..2690
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3486..4316
                     /locus_tag="DHV98_07830"
     CDS             3486..4316
                     /locus_tag="DHV98_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HCK06248.1"
                     /translation="MLHLDPNELQTPELHGYLLGAIGPRPICFASTVDEEGKVNLAPY
                     SFFNVFSARPPILIFSPARRVRDNTVKHTLENVQAVPEVVINVVNYAMVQQMSLASTE
                     YPKGVNEFVKAGFTMEPSQTVRPPRVKEAPVQLECKVVNVVSLGAQGGAGNLVMAQVE
                     RLHINQEILNAQGQIDPEKIDLVSRMGGNWYSRAKSGLFEVAKPNSDLAIGIDALPRA
                     MRQSKILSGNDLAQLANVSALPEGAHEHSGKDINAQKKAKQFIEQGAIEQAWQVLIQE
                     "
     gene            4343..4714
                     /locus_tag="DHV98_07835"
     CDS             4343..4714
                     /locus_tag="DHV98_07835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008639671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06249.1"
                     /translation="MEIQGTVKLVGTTQTFGSNGFRKRELVVTTQEQYPQHLMIEFVQ
                     DKTDLLNSINVGQSVKVGINLRGREWVNPQGETKYFNSIQGWRVELLDAGSPSMPPMP
                     PEDAFEPIGDHQDDEHDDLPF"
     gene            4715..6115
                     /locus_tag="DHV98_07840"
     CDS             4715..6115
                     /locus_tag="DHV98_07840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short-chain fatty acid transporter"
                     /protein_id="HCK06250.1"
                     /translation="MRLTAVIETLFRRFLPSPSSIALLLTALTFILALIFTEPKTSDP
                     YWLSLLGYWEQGIWQKDLLVFAYQMMLILVLGHMLVLSPVMSRFISALTTSIKGTTHA
                     VILVSVLTLLVSFFNWGLGLIFGALMARKIGEAAKTQGIKINYPLVGAAAYAGMMIWH
                     GGISGSAPAKVGEQGHLASLVTPDLAAFLPDLIAYPETVFSFQNIVVFLVLLLSIPLI
                     LVWLGRQGKEEIPRLNVAFPAERFSHSEDKTSLANGPTPRVMRMHWDESKILAYVFGL
                     AVLTAFFYNYGAALSSGIVTPNMLNFLMLGLIFIAHGRISSILKAVDQAISGASGILI
                     QFPLYFGIMGVMQNSGLVVEIANYFVALSTAETLPILTFFSAAIVNVFIPSGGGQWAI
                     QGPVILEAAISLEVPVQKVIMALAYGDQLTNMLQPFWALPLLGITKLKASELLPYTLW
                     IMLLGAVVFVAALIFW"
     gene            6182..7918
                     /locus_tag="DHV98_07845"
     CDS             6182..7918
                     /locus_tag="DHV98_07845"
                     /inference="COORDINATES: protein
                     motif:HMM:PF04371.13,HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06251.1"
                     /translation="MNRLTRILFALSMLMTPITWGQNPLPKGLTQSEKSSLGRISFTQ
                     NKVTDPPTEPVRTMAEWEEVEYLVLTWEPSFQNILRQIVAAAVIECHVVITTQNQSSV
                     SNYLSGAGIDLSRVIFMDENWDSIWIRDYAGNTVYSNDVGTRALTDWIYNRPRPNDNV
                     MPSAHAALLDLPIYITNTGTNDLVNTGGNFMSDGLGTAFASELILEENAAGNPYGVSA
                     KTEAQIDAIMNAYMGIDRYIKMPALPYDVINHIDMHMKLLDEETLLVSQYPPGVADGP
                     QIEANIAEVVASYPSVFGTPYQIEWIPAPPSSSGLYPDNGGYYRTFTNAVFINKTVLV
                     PTYRPEVDVPALERWQELLPGYNIVGIDVDNSGENLISLLGAIHCITHTIGVDEPLWI
                     VHQPIDQAAQGATVTIDARIEHISGIQGATVYWRDAAGAFESAPMTALGNDIWSVDLQ
                     MPNEAALVDYYIDATANSGKTLSRPLVAPEGFWTINVGNLSIDDFNSTRFISAAVPNP
                     TTGLVKFRLNQIHEPVQVTIHNVLGQELYRGTIPQGHGTYELALNSEWQGVLWVQFSG
                     SFGTVYRQVLKL"
     gene            complement(7943..8635)
                     /gene="truB"
                     /locus_tag="DHV98_07850"
     CDS             complement(7943..8635)
                     /gene="truB"
                     /locus_tag="DHV98_07850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HCK06252.1"
                     /translation="MSDNPFVKGQVILIDKPLNWTSFQVVNKVRWLIRQHYGLKKLKV
                     GHAGTLDPLATGLLILCTGAMTKSIEEFQGQEKKYTGRLKLGATTPSYDLETEINATF
                     NYAHITVEMLHEALPQFTGTILQKPPIFSAIKKDGKRLYNLAREGKTTELPEREIMIK
                     EFTISAVHLPEVEFIVRCSKGTYIRSLAHDFGASLGSGAHLTALRRTAIGSYDVAQAM
                     NIEQFEDFLMQA"
     gene            complement(8635..9420)
                     /gene="uppP"
                     /locus_tag="DHV98_07855"
     CDS             complement(8635..9420)
                     /gene="uppP"
                     /locus_tag="DHV98_07855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphatase UppP"
                     /protein_id="HCK06253.1"
                     /translation="MNYWEAIVLAIIEGLTEFLPVSSTGHMIIASSFFGIAQEEFTKL
                     FTIAIQLGTILSVVVLYFKRFFQTIEFYKKLFIAFLPAVVLGLMFNDLIDQLLESPVT
                     VAISLIIGGAILIKVDAWFGQGTDTEVNYKTALLIGFFQCLAMIPGVSRSGASIVGGM
                     SQKLSRTAAAEFSFFLAVPTMLGATAKKSFDYYQDGFLLTQEHINLLILGNVIGFLVA
                     LVAIKTFINYLSRNGFKIFGYYRVIIGLVLLALHYFVQPLSLV"
     gene            complement(9420..9680)
                     /locus_tag="DHV98_07860"
     CDS             complement(9420..9680)
                     /locus_tag="DHV98_07860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009778597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3098 domain-containing protein"
                     /protein_id="HCK06254.1"
                     /translation="MGEQKRKKEQAESSFVFHKSNYKIMVAGLAFIALGFILMTGGGS
                     ENPEVFNPEIYSWRRIRLAPALILIGFGLEVYAILKPHDKSE"
     gene            complement(9783..10661)
                     /locus_tag="DHV98_07865"
     CDS             complement(9783..10661)
                     /locus_tag="DHV98_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008610853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HCK06255.1"
                     /translation="MSRSFEKFQKRRLISSYISAVVSIGLVLFLLGFLGLILINSKKV
                     ADHFKEQIALTIFLKDDARNVEIDQLQQTIGLAPYTKNAVYVSKQQAAEEHSALIGEN
                     FMEFLGDNPLKNSIDVFLLAEFVTAEEIENIQNELLENSFVASVNYDKPLIVLLNDNI
                     KKISFWALITNGVFLVIAIVLINNSIRLSVYAKRFTIKTMQLVGATKGFIRAPFVRQS
                     ILFGTFGALIALFGLFGVLWALNDYFPELDIVGDIEGHIGLAAFVLGAGIIISGLSTF
                     FATRRFLNLRSDELYY"
     gene            10798..13659
                     /locus_tag="DHV98_07870"
     CDS             10798..13659
                     /locus_tag="DHV98_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HCK06256.1"
                     /translation="MSKYTFRSIEEKWQNFWAQNQTFAASDDAGSQPKFYVLDMFPYP
                     SGAGLHVGHPLGYIASDIYARYKRHKGFNVLHPQGYDSFGLPAEQYAIQTGQHPSKTT
                     QENIARYRQQLDRMGFSFDWQREVRTSDPDYYRWTQWIFIQLYQSWYDPSQDKTRPIS
                     DLIALFEQGGSTALGQDLCRVLAENLSPELSVFQAADWQTFSQEQREAILSQFRLTYL
                     AESEVNWCPALGTVLANDEIVNGVSERGGHTVVRKKMKQWSMRITAYAQRLLDGLDAI
                     DWPEPLKESQRHWIGRSQGASVIFEVKGHQAQIEVFTTRPDTIFGVSFLTLAPEHEWV
                     TALTTAEQKQAVEAYVQASAQRSERERMADVKRISGVFTGAYAIHPLSGAEVPIWIGD
                     YVLAGYGTGAVMAVPCGDQRDYDFAKHFDLPIPNIFKDVSIENQAYTLKDPCIINQSD
                     FLNGLSYSQACAEAIKALEACGRGRGTINYRLRDAVFSRQRYWGEPFPVYYKNGLPQM
                     IDPEYLPLVLPEVDAYLPTEDGDPPLGRADQWAWDTEQKAVVSNQHIDHVRVFPLELN
                     TMPGWAGSSWYFFRYMDPKNKEVFASKQTLDYWGSVDLYIGGSEHATGHLLYSRFWVK
                     FLFDRGFISVDEPFKKLINQGMILGESAFVYRTADGKQLVSAGRIQDFDPQQLQSVHC
                     DVSMVSLTNELDIEKFIAWRPEYAGAAIVGEVEGTFKVKREVEKMSKSKFNVVNPDDI
                     CDQYGADTLRLYEMFLGPLEQSKPWSTAGITGVHGFLKKLWKLYHSGKSESFCVSEEA
                     PSTEALKVLHKAIKKVNSDIQEFSFNTSVSTFMIAVNELSALKVTERGILEPLAVLMA
                     PYAPHIAEELWSKLGHGQSIAGVAYPEHDPKYLVESSKTYPISFNGKTRFTLDLSMDL
                     SKEEIESAVLADERTQAQLQGRTPKKVIVVPGKIVNIVG"
BASE COUNT         3771 a         2821 c         3227 g         3847 t
ORIGIN      
        1 atgatgtaag tcttagctat gcgatgccca aacccttgat tggaaaaaca atgtccgtgc
       61 aggtgttggc caacaatatt tttagtgcgg tgtatagcag caatggctac tactacactt
      121 atgatgatga tttttctgtg cccgatacga taacgaccat agaaggaacg gggtattatc
      181 ctcaagcctt gttcaatatt ttggctggag taacccttgg attttaattg ctgatgatca
      241 acacatcacc gttgcgctga gcgcgatatg ggagcattgg atacgcttgg ctttcagatt
      301 ggtgctgtcc ggtaaccaga tcgtaactat tgccatcgct gcaggggcaa gtcgcgacga
      361 tgccctgaag ggtcatcgta gagcagttat ttggactgtg gtttgggtcg cttaaatcga
      421 aggcagtgta gaggctgttg ttgacgttat aaaccacaac gccgcgaacc ccttgattgc
      481 tgagcacgac aaaattaccg ggatatttca acaggttgta ttggggtaag ttaagattta
      541 aattaagtga gacgggaatc gggtttaaat atggattatt aatcagccga gtatcgtctt
      601 cacccccaca gctcatcacg gtaaaaataa gaacagtcca gaggggatag gggaataatt
      661 ttttcatgga tttgataaaa aatcgacttt ttagtacaac gcgaaattta cgataaagtt
      721 atcagaataa aatttttata tctttgtaag agatcccatc atgtatggga tctttttatt
      781 cccaacagca caccctggct ttagaaaaaa ggcgtcatgt tcggggatat tttttttaaa
      841 caagtcgatt atgagtaaag tatcttatta cactgcagaa ggattaaaaa aattgcgcga
      901 tgaacttgat cgtttgcgtg atgtggagcg gccaaaggcg tctcaggcga ttgctgatgc
      961 acgcgataaa ggtgatctaa gtgagaatgc ggaatacgat gcggccaaag aggctcaagg
     1021 cttgctcgaa ttgcgtattg ctaagctcga agagactttg gcgggggccc gtttaatcga
     1081 tgaatctcaa ctggatacgt caaaagtttt ggtgcattct acggtgaaaa tcaaaaacac
     1141 cgtaaataac atggaaatga cctataagct agtcgcccaa agtgaggcag atcttaagtc
     1201 aggaaaaatt tctgttgatt cacctattgg gaagggctta ttgggaaaaa aagtgggtga
     1261 tattgcatcg atttccgttc caaacggtac gatagcccta gaaattgttt ctannaccca
     1321 ttggtaaggg tttgttgggt aaaaaagttg gtgaaatggc tgcaattcag gtccccaacg
     1381 gcgtagtgaa ttttgaaatc atacatatta cccgagatta atcatggcca gtatctttac
     1441 acagattatt cagggaaata taccgtgtta taaagtggca gagaacgatg atttcttggc
     1501 ttttttggac atcaatccca atgccaaagg ccataccctt tgcattccaa aaattgaggt
     1561 cgataaacta tttgatttgg atcaagaaac gtatcatgga ctcatggaat tttctcgaaa
     1621 agtggccaaa gctttggaga aaaccgttcc gtgcaagaga atcggcatgt cggttatcgg
     1681 ccttgaggta ccgcatgttc atgtgcactt gattccgtta aatcatatgg aagatatcag
     1741 atttattcaa aaaactgaaa tgagcgctca gcagctagag ggcttagccc aagctatagc
     1801 cagccatttt gaaggctaat ccaaagccct actccgctga gtaaaaacat taaagctacc
     1861 ccgacagcaa ttttcccttt cttttttagc ctaacctccg agggcattgg ttgaaaacat
     1921 tttcgttgat aggcgtaaac gcgttctatc gcttcgtccc atgatccggg gtaaatttct
     1981 tggctacagt gctgacaaaa aagttgttct tggatctctg ctgcggttat aatgacccat
     2041 gaattctctt tttgattttg aataaaagag aaaaccatgc cccttgcaga aaaacaattg
     2101 ggacagtgat tgtttatgtc agcgcgatgt atgacaaatt ctttgacaat cattaggcaa
     2161 cttcgggtag gtttatttca agggtactcc cttggtcctt gatacttttt aaaacgcgga
     2221 tttttccgcg atgataatct tcaacgatac gtctggctaa ggagagtccc aagccccaac
     2281 cgcgtttttt tgtggtgaag cccggacgga atattttgtt gaagtgcttt ttgggaatcc
     2341 cttttccact gtctgagata tgcagtaaaa cgcgcttgtt ctgcgaactc atgcggatag
     2401 aaattgtgcc ttgtccacgc atggcatcaa ttccattttt cactaaattt tctaaagtcc
     2461 aactaaagag ttcggcgttg agtgccacga gtatggacgt gtccggaagg tcgatgtcaa
     2521 aagcgatcag atttgaactg cggcttttga gataaccgca ggtttctttg gtcagagcga
     2581 caatatccat gggcgatagg gttggtgttg agccaatttt tgaaaaacga tcagtannnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn cctgagccaa
     2701 tttttgaaaa tcgatcagta atctttttca aacgattgat atcgttttca atttctgtga
     2761 tataattttt agggatgtct tcggatttca acaattctgc ccaacccact aaagaagata
     2821 agggggttcc gatttggtgc gcggtctctt tggccattcc ggcccaaagc ttattttgtt
     2881 cagcagattt ggaggtatta tagaaagaca ctaaggctga ataaaacagc agcaagatca
     2941 ctaacaagac aatgggatag tactttattt tggtaatggc tggagagttt ccgtaataaa
     3001 ttgtttgaag taattcgttg ttgtaacgga tttctatggg attgaattca gagctaaatt
     3061 gctcgatgag cgcttgacga ttctctggat cctgaaggac ttcatctgag aggttgttga
     3121 ccgaataggc gtcctctttg tgggtgtaga ggatcatggg cgtggtggta ttgctctgaa
     3181 gaatattcag gataagtttg ctgttccatt ctttattggt gatgtcaact tgctgaaatt
     3241 cttcaaaagc acctgcccaa atagacattt tatgacgctc gttttcttta agttgggtaa
     3301 agagtcggta ggtgttccag gcaattagag agacaattag ggctgaaagc accacaaata
     3361 gccaacgagt aaaatcgcta agagttcgca tagggctgat attacgttta aagataacgc
     3421 aattatgtta atattaatat gaaggacttt tttaagattt ctgcaattaa actaccttta
     3481 ccaagatgtt gcatttagat ccaaatgagt tacaaacacc cgaacttcac gggtatcttt
     3541 taggagccat tgggccacgt ccgatctgtt ttgccagtac ggtagatgaa gaaggaaagg
     3601 tcaatttagc cccttatagt ttttttaatg tttttagtgc acgaccgcct attttgatat
     3661 tttctccggc gcgccgtgtt cgagacaaca cggttaagca taccctagag aatgttcagg
     3721 cagtacccga ggtagtgatt aatgtggtga actacgcgat ggtccaacaa atgagtttgg
     3781 cctcaactga atatccaaaa ggcgttaatg aatttgtgaa agctggattt actatggaac
     3841 catctcaaac ggttcgcccg ccaagggtta aggaagctcc ggttcaattg gaatgtaagg
     3901 tagtcaatgt agtgtcgtta ggcgctcagg gtggcgcggg caacttagtt atggctcagg
     3961 tcgaacgctt gcatatcaac caagagatac ttaatgctca aggccaaata gatcctgaga
     4021 aaatagacct ggtatcgcgc atggggggca attggtattc cagagcgaaa tcaggtttat
     4081 tcgaagtggc taaaccgaat agcgatctgg ctatagggat tgatgccttg ccacgcgcta
     4141 tgcgacaaag taaaattctc tcgggtaatg atctggcgca actcgctaat gtaagtgctc
     4201 ttccagaagg ggcccatgaa cacagtggaa aggatataaa tgcgcaaaaa aaagccaagc
     4261 aatttatcga gcaaggggcc attgaacagg cttggcaagt gttaatacag gaataataat
     4321 agtgtaacaa aatagaatac cgatggaaat acaagggacc gtaaaattag taggaacaac
     4381 ccaaactttt ggcagtaacg gatttagaaa acgcgaattg gtggtcacca ctcaggagca
     4441 atatccacaa cacttaatga tcgaatttgt ccaggacaaa acggacttgc tcaactcgat
     4501 caatgtgggc caatcggtta aagtaggcat taatttgcgt ggacgtgagt gggttaatcc
     4561 tcaaggagag actaaatatt ttaattctat tcaaggctgg cgcgttgagt tgctcgatgc
     4621 cggtagccca tctatgccgc caatgccacc agaagacgct tttgagccca ttggcgatca
     4681 tcaagacgac gagcacgacg atttaccgtt ttaaatgcgg ctaacggccg tcatagaaac
     4741 cctctttaga cggtttttgc cgtctccttc ttcaattgcg ttattgctga cggctctaac
     4801 ctttattttg gcgctgattt ttactgagcc aaaaacttct gacccatatt ggttgagtct
     4861 tttggggtat tgggaacaag ggatttggca gaaggacttg ctggttttcg cttaccagat
     4921 gatgctcatt ctggttttgg gtcatatgtt ggtgctcagc ccggtgatga gtcgttttat
     4981 atcggcccta accacgagta taaagggaac cactcatgcg gtaattttag tttcagtatt
     5041 gaccctgttg gtttcatttt ttaattgggg tcttggtctt atttttgggg ccctaatggc
     5101 gcgaaagatc ggtgaggccg ccaagacaca aggaataaaa attaactatc ccttagtcgg
     5161 ggcagcggcc tatgcaggga tgatgatttg gcacggtgga atcagtggtt ccgcaccggc
     5221 caaagtagga gaacagggtc atttagcttc attagtcacc ccagatctcg ccgcgttttt
     5281 acccgactta attgcgtatc ccgaaacggt attcagtttt caaaatattg tcgttttttt
     5341 agtcctctta ttgagtattc cattgatttt ggtttggctg gggcgccagg ggaaagagga
     5401 aatacctcgc ttaaatgtag cgtttcccgc agagcgcttt tcacatagtg aggacaaaac
     5461 ctcgctcgct aatgggccca ccccgcgtgt tatgaggatg cactgggatg aatcgaaaat
     5521 cttggcctac gtttttggtt tagcagtgct taccgccttt ttttataact acggggccgc
     5581 cctgagcagt ggaattgtta ccccgaacat gctcaatttt ttaatgcttg gattgatttt
     5641 tatcgcccat ggcaggattt caagcatact aaaggcagtg gatcaggcta tttctggagc
     5701 ctccggaatt ttgattcagt ttccgcttta ttttgggatc atgggcgtaa tgcaaaatag
     5761 cggtctcgtg gtagaaatcg cgaattattt tgtggcccta tccactgctg aaaccctccc
     5821 aattttgact ttctttagtg cggcgatcgt caatgtattt attccttcgg ggggcggtca
     5881 gtgggccatt cagggtcctg tgattttaga agcggccatc tcattagagg tccctgtgca
     5941 aaaagtgatt atggcgctgg cctatggcga tcaattaacc aatatgctcc agcctttttg
     6001 ggcgctgccg cttttaggca ttaccaaact caaggctagt gagcttttgc cttacacttt
     6061 atggatcatg cttttggggg ccgtggtctt tgttgcggca ttgatatttt ggtagacatg
     6121 agccgtctat ctttgcggat aaaggcccat ttttaattat cttgctgcaa aatacagtta
     6181 catgaatcga cttacccgga tattatttgc cctgagtatg ttaatgaccc caattacctg
     6241 gggtcaaaac ccgctgccta aggggttaac acaatctgaa aaaagcagcc tcgggcgcat
     6301 ttctttcaca caaaacaaag ttacagaccc acctacagaa cctgtaagaa ccatggccga
     6361 gtgggaggaa gttgagtatt tggtcctcac ttgggagccc agctttcaaa atatattaag
     6421 acaaattgtt gctgcggccg tcattgaatg tcatgtggtg attaccacac agaatcaatc
     6481 ctctgtgtca aattatttgt ccggggccgg tattgacttg agtcgtgtca tttttatgga
     6541 cgagaattgg gactctattt ggattcgcga ttatgccgga aatacggtct acagcaatga
     6601 tgtcggtacg cgcgctctga cggattggat ttacaataga ccgcggccaa atgacaatgt
     6661 catgccttcg gcccatgctg cgcttctgga cctgccgatt tatatcacaa acacaggaac
     6721 aaatgatctg gtcaatacag gaggaaattt tatgagtgat ggccttggaa ccgcctttgc
     6781 ctcagagctt attttagaag aaaatgcagc gggtaatcct tatggggtaa gtgccaaaac
     6841 agaggctcag atcgatgcaa tcatgaatgc ctacatgggg attgatcgct atataaaaat
     6901 gcctgcgttg ccctatgatg tcattaatca tatcgatatg cacatgaagc tattggatga
     6961 ggaaaccctc ttggtgagcc agtatcctcc cggggttgcc gatggcccac agattgaagc
     7021 gaatattgct gaggtcgtgg ccagctatcc ctcggtattt gggacacctt accaaattga
     7081 atggattcct gcaccgccga gtagttctgg attatatcct gataatggcg gttattaccg
     7141 cacatttact aatgccgtgt tcatcaacaa aacggttttg gtgcccacct atcgtcctga
     7201 agttgatgtc ccggcccttg agcgttggca agaattattg ccgggctaca acattgtggg
     7261 tattgatgta gataattcag gagagaattt aatctcacta ctgggggcca tacattgtat
     7321 aacccatacc attggagtcg atgagccctt gtggattgtt catcagccta tagatcaagc
     7381 ggctcagggc gcaaccgtca ccattgatgc ccgaattgag catatttcag ggattcaagg
     7441 ggctaccgtg tattggcgtg atgctgcagg agcttttgag tcagccccaa tgactgctct
     7501 tggcaatgat atttggagtg ttgatttgca aatgccaaac gaagcggccc ttgtagatta
     7561 ttacattgat gctacagcaa attcaggaaa aaccctttcg cgacccctgg tcgccccaga
     7621 gggtttttgg accataaatg tggggaattt atcaatagat gatttcaata gtactcgttt
     7681 tatttcggct gccgtcccta atccaacaac aggattagta aaatttaggc tgaatcaaat
     7741 tcatgagccc gttcaggtca ccattcataa cgttctggga caggagcttt atcgaggaac
     7801 tattccccag ggccacggaa cttatgagtt agccttaaat tcagagtggc aaggcgtgtt
     7861 atgggtgcag tttagtggat cctttgggac tgtctatcgt caggtattga agctttaata
     7921 aacggtttgt cttaaggaca aattaagcct gcatgaggaa atcctcaaat tgctctatgt
     7981 tcatggcttg tgcaacatca taactgccga ttgccgttcg tctaagcgcg gttaaatggg
     8041 ctccactgcc taatgaggcg ccaaaatcat gagctaagga gcggatataa gtccccttac
     8101 tacaacgcac gataaattcc acctcaggta aatgaacggc acttattgta aattccttta
     8161 tcataatttc tcgctcaggc aactcggtgg ttttaccctc ccgggcgagg ttgtagagtc
     8221 gttttccgtc ttttttaatt gctgaaaaaa tagggggctt ctgcaaaatt gtcccggtaa
     8281 attggggtaa tgcctcatgt aacatttcta ccgtaatgtg cgcgtagtta aaagtggcat
     8341 taatctctgt ttcaagatca tagcttggag tggtcgcgcc aagttttaag cggcccgtat
     8401 attttttttc ttgaccttga aattcctcaa tagattttgt catcgcccca gtgcacagga
     8461 tgagtaaacc ggtggctaga ggatctaggg ttccggcatg tcctactttt aactttttta
     8521 atccgtagtg ttgacggatc aaccaacgaa ctttgttgac gacttgaaac gaggtccaat
     8581 tcaggggttt gtcaatgagg attacttgac cttttacaaa gggattgtca gacattacac
     8641 caggcttaaa ggctgaacaa aatagtggag ggctaacaat acaagcccga taatgacccg
     8701 gtaataacca aagattttaa agccatttcg acttagatag ttgataaaag tttttatcgc
     8761 aaccagggcg accaggaaac caattacatt gcctaaaata agcagattaa tatgctcctg
     8821 ggtcagtaaa aatccatctt ggtaatagtc aaaagacttt tttgctgtgg ccccaagcat
     8881 ggtaggcact gccaagaaaa aagagaactc agcggccgca gtgcgggaga gtttttgcga
     8941 catgcccccc acgatacttg ccccactgcg cgaaacccca ggaatcatcg ccaagcactg
     9001 aaaaaaacca ataagtaagg cggtcttata attgacctcg gtatctgttc cttgaccaaa
     9061 ccaggcgtct accttgatga gtattgctcc tccaatgata agagaaatgg ccacggtaac
     9121 cggactttct aataattgat caatcagatc attgaacatc aaccccaaaa caaccgcagg
     9181 caaaaaggcg atgaataatt ttttataaaa ttcgatggtt tgaaaaaatc gtttaaagta
     9241 aagaacgacc acactcaaaa ttgtccccag ttgtatggcg atggtaaata acttagtaaa
     9301 ttcttcttgc gcaatgccaa aaaatgatga ggcaatgatc atatgccccg tggaagacac
     9361 gggtaaaaat tcggtaagtc cctcaataat ggccagtacg atggcttccc aataattcat
     9421 tattctgact tatcatgagg tttgagaata gcgtaaacct caaggccaaa cccaatgagg
     9481 atgagcgctg gcgctaaacg aattctcctc cagctgtata tttctggatt aaatacctcg
     9541 gggttctcac tgccgccccc ggtcataaga ataaatccta gggcaataaa ggcaagcccc
     9601 gctaccatga ttttgtagtt ggatttgtga aagacaaatg aagattcggc ctgttccttt
     9661 tttctttttt gttcccccat atcagaatta aaatggtctt gttaagcgtg gggctaagtt
     9721 acgttttttc ttttcattct aatccaaaca gcggtcgcgt tgcgcttact ggagacttcc
     9781 agctaataat acaattcgtc gctgcgcagg tttaagaatc ttcgggtggc aaaaaaggta
     9841 ctcaagccgc taatgataat tcctgcccct aaaacaaaag ccgccagccc gatgtgcccc
     9901 tctatatcgc ccacaatgtc caattcggga aaataatcat tcagggccca taatacccca
     9961 aacaaaccaa agagggcaat taatgcccca aaagtcccaa acaaaatgct ttgacggaca
    10021 aagggcgcgc gaataaaacc tttggtcgcc ccaaccagtt gcatggtctt gatggtgaat
    10081 cgtttcgcgt aaacggaaag gcgaatagag ttgttgatca ggactatagc aatgactaaa
    10141 aagacaccgt ttgtgattaa agcccaaaaa ctaatttttt tgatgttgtc attgagcaaa
    10201 acgatcaagg gtttgtcgta atttaccgac gcgacaaagc tgttttccaa caattcattt
    10261 tggatgtttt cgatttcttc tgccgtgaca aattcagcca ataaaaatac atcgatgcta
    10321 tttttcaaag gattgtctcc aaggaattcc ataaaatttt ctccaataag ggcgctgtgc
    10381 tcttctgccg cttgctgctt ggaaacatag acggcatttt ttgtgtaggg agccaagcca
    10441 atagtctgtt gcagctggtc aatctcaaca tttcgcgcat cgtcttttaa gaagatggtg
    10501 agcgcaattt gctctttaaa atggtctgca acctttttag aattgattaa aatgagcccc
    10561 aaaaacccaa gtaagaataa aacaagccca atactcacca ccgcagagat atacgaggaa
    10621 attaggcgtc ttttttgaaa tttttcaaag gagcgactca tagttcaggt agattcagtg
    10681 taaaaataca aggaattttg ggatgaggga ataccttagg tttaaacttt tctctttcgg
    10741 tcaataggtg taaatttgcc accaataaaa cggtcgaggt tttaatatca gcgcattatg
    10801 agtaaatata cttttcgctc catcgaggaa aaatggcaaa atttttgggc ccaaaatcaa
    10861 acttttgccg ccagtgatga cgctggaagc caaccaaagt tttatgtctt ggatatgttc
    10921 ccctatcctt ctggggctgg gcttcatgtc ggacatcctc tgggctatat cgctagtgat
    10981 atttatgcgc gctacaaaag acacaaaggc tttaatgtct tgcaccctca aggctatgat
    11041 agttttgggt tacccgcaga acaatacgcg attcaaaccg ggcagcaccc gagtaaaacc
    11101 acccaagaaa atattgcccg ttatcgacag cagctcgatc gaatgggatt tagttttgac
    11161 tggcagcggg aagtacgcac ctctgatcct gattattacc gatggactca gtggattttt
    11221 attcagctct accaaagctg gtatgaccca agtcaggaca aaaccaggcc gataagtgac
    11281 ttgattgcac tttttgagca aggcggcagc actgctctag gtcaagactt atgccgcgtg
    11341 ctcgccgaga atttatcgcc ggaactttct gtttttcagg ctgccgattg gcagactttt
    11401 agtcaagagc aaagagaagc catcttgagt caatttcgct tgacttattt ggcagagtct
    11461 gaggtcaatt ggtgccccgc cttgggcact gtattggcca atgatgaaat cgtaaacggc
    11521 gtttcagaac gtggaggaca cactgtggtt cgtaaaaaaa tgaagcagtg gagcatgcgg
    11581 attaccgcct atgctcagcg tttattagac ggacttgatg ctatagattg gccggagccg
    11641 ctaaaagaat ctcaaagaca ttggattggt cgctcccaag gggcatcagt gatttttgag
    11701 gtcaaaggac accaagcgca gatcgaagta tttaccacgc gtcctgatac gatatttggg
    11761 gttagttttt tgaccttggc gccagagcac gaatgggtta ctgccctgac cactgcggag
    11821 caaaaacagg ccgtagaggc ctatgtgcag gcgagcgctc agcgcagcga gcgcgagcgt
    11881 atggccgacg ttaagcgtat tagcggggtg tttacgggcg cttacgcgat acacccatta
    11941 agtggggccg aagtacccat ttggattggg gattacgtct tggctggata tggtacaggt
    12001 gccgtgatgg ccgtgccgtg tggggaccag cgcgattatg attttgccaa gcactttgac
    12061 ctgcccattc cgaatatatt caaagatgtt tccatagaga accaggcata cacgctgaag
    12121 gacccttgta ttattaatca aagtgacttt ctcaatggcc tgagttatag ccaagcctgt
    12181 gcagaagcca tcaaggcact tgaagcctgt ggtcgtggtc gggggaccat taattatcga
    12241 ctgcgcgatg cggtttttag tcgtcagcgt tactgggggg aaccatttcc cgtttactat
    12301 aaaaatggcc tcccacagat gatcgatccc gaatacttac cccttgtttt accagaggtc
    12361 gatgcctatt tgcccactga agacggcgat ccgccactgg gtcgcgcaga tcaatgggct
    12421 tgggatacgg aacaaaaagc cgtggtgtcg aatcaacata ttgaccacgt cagggtattt
    12481 cctctcgagc tcaatacgat gccgggttgg gccgggagta gttggtattt tttccgctat
    12541 atggacccaa agaataaaga agtctttgcc agtaaacaga ccctagatta ttggggttct
    12601 gtcgatttat acatcggggg gagcgaacac gctaccggac acctgttgta cagtagattc
    12661 tgggtgaagt ttttatttga tcgcgggttt atctctgtgg atgaaccgtt taaaaaattg
    12721 attaatcaag ggatgatcct tggagagagc gcatttgttt atcgcacagc ggacggcaag
    12781 caattggttt ccgcgggacg tattcaggat tttgatccgc aacagttgca aagcgtgcat
    12841 tgtgacgtct ctatggtgtc tttgaccaat gaattggata tcgaaaaatt tatcgcctgg
    12901 cgaccagaat atgccggggc agcaatcgtc ggcgaggtag agggcacatt caaggtcaag
    12961 cgagaggttg aaaagatgtc aaaatctaag ttcaatgtgg ttaacccaga cgatatttgc
    13021 gatcaatacg gcgctgatac cctgcggctt tatgagatgt ttttagggcc tttggagcaa
    13081 tcaaaaccat ggagtactgc gggaatcaca ggggttcacg gatttttaaa aaaactgtgg
    13141 aaactttatc acagtggcaa atctgagtct ttttgtgttt ctgaagaggc cccaagtaca
    13201 gaggcgttaa aggtcttgca caaagcaatt aaaaaggtga attcagacat tcaagagttt
    13261 agtttcaaca cctcggtcag tacctttatg attgctgtaa atgagttaag cgcccttaaa
    13321 gtcactgagc gcggtattct agagcctctg gctgtattaa tggcccctta cgcacctcat
    13381 attgctgagg agctttggtc gaaattgggt catgggcaaa gtatagctgg ggtcgcttat
    13441 cctgaacacg acccaaaata tttggtcgaa tcttctaaaa cttatcccat ttcctttaat
    13501 ggtaaaacac gatttaccct ggacttgtct atggatttgt ccaaagaaga aatcgagtct
    13561 gccgttctgg ccgatgaacg cacccaagcc caattacagg gaagaactcc gaaaaaagtt
    13621 attgtagtcc ccggaaaaat agtcaatatc gttggttaag gttttgacta tggctgcgtc
    13681 agaatgtcag actaatggtt taatattgtt ttggcattag at
//
LOCUS       DPUP01000207            7365 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_32558,
            whole genome shotgun sequence.
ACCESSION   DPUP01000207 DPUP01000000
VERSION     DPUP01000207.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 7365)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 7365)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7365
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(124..849)
                     /locus_tag="DHV98_07875"
     CDS             complement(124..849)
                     /locus_tag="DHV98_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013620708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HCK06257.1"
                     /translation="MAQYVIGDIHGGNRALTQLLARVPIRPNDQLIFLGDYLDGWSEG
                     PEVIDSLIALSKQYNCRFIRGNHDALCLDYLKNGKAPQQWVIHGGQSSIDAYKHCPSA
                     QIDRHIAFLEHLENYIEIEARLFVHAGFSHPKGPKEEFHAHLVYWDRSLWETARAAHH
                     LTDQDSWQYPERLKLYKEIYIGHTPVQRIGASTPFCASNVWNVDTGAAFGGALSAINT
                     ATKEFWQSDPLPSLYPNELGRQA"
     gene            complement(849..1619)
                     /locus_tag="DHV98_07880"
     CDS             complement(849..1619)
                     /locus_tag="DHV98_07880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008611165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HCK06258.1"
                     /translation="MTRLKDKTALITGATSGIGLATARALAQEGCRLIIAGRRQERLT
                     ALSQELKTLVPVHALNFDVRDKVRVFDLLGHLPSDFNQVDILINNAGNAHGLDSIQEG
                     NPDDWDAMIDINVKGLLYVSKAIIPGMVSRGQGHVIHIGSTAGKEVYPKGNVYCASKH
                     AVDALNHGMRIDLNGKGIKVSAIHPGMVETEFSQVRFKGDATRADQVYKGFTPLHPED
                     IAEIIVFALNRPAHVNIADLTVMCLDQASSTIVNKRNS"
     gene            complement(1637..2506)
                     /locus_tag="DHV98_07885"
     CDS             complement(1637..2506)
                     /locus_tag="DHV98_07885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HCK06259.1"
                     /translation="MKNSFSSVIVGCMDWGSWRRNFDTSEMTELIQESVSLGLTSFDH
                     ADIYGDYTVEEQFGKALDKAKVSRQDLQIISKCGIQYACEARPHTVKHYQYDTAYIIE
                     SAVRSIEHLRCDYLDLFLLHRPSPLMRPEAVAEAVNTLKEQGKIKAFGVSNFTPSQTA
                     LMASKTEIAVNQIQCSLTHLTPFFDGSLDHMMTHGIQPMAWSPIGKVFKDKSEATYRI
                     HAVLNRLCEEYQATKDQIVLAWLMTHPSGIIPVVGTTQKERLATAAKAAEIKLSEIHW
                     FELLVASQGHKVP"
     gene            2687..3691
                     /locus_tag="DHV98_07890"
     CDS             2687..3691
                     /locus_tag="DHV98_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HCK06260.1"
                     /translation="MESNQNPQDLGMLNEMIERESAIVNLLAQEMNKVIVGQKHMIER
                     LLIGLLSQGHILLEGVPGLAKTLAINTLSKAVKGSFSRVQFTPDLLPADVIGTMIYNI
                     KTNDFSIKKGPIFANFVLADEINRAPAKVQSALLEAMQEHQVTIGDETFKLDQPFLVM
                     ATQNPIEQEGTYPLPEAQVDRFMLKTVIDYPALAEEQLIIRQNLNGGLESVNPVITLD
                     QIKKAQKAVRQVYMDEKIERYILDIIFATRRPEDYNLSDLKPLISYGASPRGSINLAL
                     AAKSYAFIKGRGYVIPEDVRAVVDDVLRHRVGITYEAEAEEVTSVALIHRIVDVIEVP
                     "
     gene            3786..4652
                     /locus_tag="DHV98_07895"
     CDS             3786..4652
                     /locus_tag="DHV98_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HCK06261.1"
                     /translation="MDTKTLLKKVRAIEIKTRRLSDHVFGGEYHSTFKGRGMTFSEVR
                     SYQYGDDIRAIDWNVTARYNEPFVKVFEEERELTLMLMVDVSQSEFYGTQQQFKGEML
                     TEIAATLAFSALQNNDKIGLILFTDQIELFIPPKKGKSHVLRVIRELLEFKPQGKKTD
                     IGAALKYLTSVMKKKAIVFVLSDFISAPFLSPLRIAARKHDVTGIRVYDQSEAALPNL
                     GMVEMLDRETGERRLIHTGSKTVRRNHHLAYQKRVTAFHEAFSKCGAGTIDCSLQESY
                     VKKLLGYFKNRA"
     gene            4612..>5866
                     /locus_tag="DHV98_07900"
     CDS             4612..>5866
                     /locus_tag="DHV98_07900"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06262.1"
                     /translation="MSKSFWAISKTERKGMSTARKHRTSGMGLLWSRGFFGLLMILTL
                     GIGKQLNAQVKASVDTTQMRIGEELEFLIQVQADSTDFVMFPEGKSFGAFEVIRSYAV
                     DTLRDQSNKHRWQLLKKYGLTQFDSGYHRLSKQRVMINDSAFDTPEFNVAVLTIPVDT
                     TQQQIFAIKPSAQVPLQSGPIWPWIALTGVALLAALFWWWRIKKSEAQAPAPPPLPPY
                     QEARQRLEKLSAHESLEQIGFKGLYTELTDVLKTYIHREIDSRALESTTDELLDRLEL
                     HRLGDHFDIKIETINALGQILRRADLIKFAKANVTKAQWQEDFTQARTIVEALKASIP
                     EPEPEEEQAALDAAARAALHARQKRKRQWIYSMAALLTAGVAYVFYVGPQEAQDQIFG
                     NTMRDLAEGPWYKSEYGVPAVILESP"
     assembly_gap    5867..5947
                     /estimated_length=81
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5948..6299
                     /locus_tag="DHV98_07905"
     CDS             <5948..6299
                     /locus_tag="DHV98_07905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06263.1"
                     /translation="TQPQENWNIAMALNRSLVLLEEQGASTLIVKDESFETPEGIKGI
                     RAYGSFYVANASGQVGTESHQYELLVFDQQGGIQTVMVAFVDDDRFAQGLKERIINSV
                     SLEIPQTNQKPETP"
     gene            6296..>6666
                     /locus_tag="DHV98_07910"
     CDS             6296..>6666
                     /locus_tag="DHV98_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerotolerance regulator BatA"
                     /protein_id="HCK06264.1"
                     /translation="MTRTFEFVSPEWFWLLALVPVMVFWFWYSRRRHNAEWNMSALNT
                     ADRSTNFWSLAKSFLWVLRLAAMVLIIIALARPRYVDQSTRIKTSKGIDIVMAIDVSA
                     SMLARDLTPNRLEALKEVAAR"
     assembly_gap    6667..6829
                     /estimated_length=163
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6830..>7365
                     /locus_tag="DHV98_07915"
     CDS             <6830..>7365
                     /locus_tag="DHV98_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aerotolerance regulator BatA"
                     /protein_id="HCK06265.1"
                     /translation="INSRPNDRLGLVEYAGESYTKTPLTSDKTLVLSALKSIEYNTII
                     EGGTAIGMGLATSVNRLKESRAKSKVIILLTDGVNNSGFIDPRTASELAVEFGIKVYT
                     IGLGSNGLALSPVGMRPNGQFQYGKVPVEIDEALLQEIAQTTGGLYFRATNNSKLGEI
                     YDEINKLEKTEVEEFKHQ"
BASE COUNT         1983 a         1537 c         1704 g         1897 t
ORIGIN      
        1 ttccgatctc gagaatcggg cagtgatgct tggaaagtct acatgcgtcg tcagaccaac
       61 acgattaact acactacaga attgcctttg gctcaaggga ttaagttcga tttgtaagtt
      121 gtttcaagct tgacgcccga gttcattagg gtaaagactc ggcagtggat cgctttgcca
      181 gaattctttg gtcgcggtat tgatggcgct cagcgccccg ccaaaagcgg ctcctgtatc
      241 cacgttccat acattagaag cgcaaaaagg tgttgaggct ccgatacgtt gaaccggagt
      301 gtgcccgata taaatctctt tatataattt aaggcgttcg gggtattgcc aggaatcctg
      361 atccgttaaa tggtgggccg ctcttgcggt ttcccagagg cttcggtccc aataaacgag
      421 gtgggcgtga aattcttctt tgggaccttt tgggtgtgaa aatccagcat ggacaaataa
      481 gcgggcttct atttcgatat agttttcaag gtgttccaag aaggcgatgt gacgatcaat
      541 ctgcgctgaa ggacaatgct tataggcatc tattgaactt tgcccaccat ggataaccca
      601 ttgctgtggg gccttgccat tttttaaata atccaagcaa agggcatcgt ggttgccacg
      661 aataaaacgg caattatatt gtttcgaaag cgctattaat gaatcaatga cttcgggccc
      721 ttcagaccaa ccatccaggt aatcgcctaa gaaaatgagc tgatcattcg gtctgatcgg
      781 gacgcgcgct aacagttggg tcagtgcgcg atttcccccg tgaatgtcac caataacata
      841 ctgtgccact aggaattcct tttattgaca atggtactcg aggcttgatc caaacacatg
      901 accgtgaggt ctgcgatatt cacatgggca ggcctattga gggcaaaaac gataatctct
      961 gcgatatcct cagggtgcag cggcgtaaac cccttataaa cttgatctgc gcgcgtggca
     1021 tctcctttaa aacgaacctg gctaaactca gtttcgacca tgcctggatg aatcgcactg
     1081 actttaattc ctttgccgtt gaggtcgata cgcattccgt ggttcagcgc atctacagcg
     1141 tgcttgctgg cacagtacac attgcctttt gggtagactt ctttgccggc tgtggatccg
     1201 atatggatga catggccttg tccacggctc accatacctg gaataatggc ctttgaaaca
     1261 tacaaaaggc ctttgacgtt tatgtcaatc atggcatccc aatcatcagg attcccctct
     1321 tgaattgaat ccaagccatg agcgttgccc gcattgttga tcaaaatgtc cacctgatta
     1381 aagtcagacg ggagatgacc caagagatca aaaacacgca ctttgtcacg gacgtcaaaa
     1441 ttaagggcat gaacaggaac caaagttttt agttcttggg ataaggccgt taatcgctcc
     1501 tgtcttctgc cggcaataat taaccgacag ccttcttgag ccagtgctct cgccgttgcg
     1561 agccctatac ctgaagtggc tccggtgatt aaagcggtct tgtctttgag tcgtgtcata
     1621 ttttgataga gaattattaa gggactttat ggccttgact ggccacaaga agctcaaacc
     1681 aatgaatttc agaaagtttg atttcggcgg ctttggccgc agtcgctaaa cgttcttttt
     1741 gggtggtccc caccacagga ataatccccg agggatgggt catgagccaa gccaacacga
     1801 tttgatcttt ggtggcttga tattcttcac acaatcgatt aagcaccgca tggattcggt
     1861 aggtcgcctc gcttttgtct ttaaaaactt taccgatcgg actccaagcc ataggctgaa
     1921 ttccatgagt catcatatgg tccaggctac cgtcaaaaaa aggagtcaaa tgcgttaaag
     1981 aacattgaat ttgattcaca gcaatttccg tttttgaagc cattaacgcg gtttggctcg
     2041 gggtgaagtt cgatacgcca aaggccttga ttttcccttg ctctttaagg gtgtttacag
     2101 cctcggccac cgcctcaggg cgcattaatg gacttggacg atgcaacaaa aatagatcga
     2161 gatagtcgca gcgcaagtgt tcaattgaac gcacagcact ctcgatgata taggcggtat
     2221 cgtattgata gtgttttacg gtatgtgggc gggcttcaca agcgtattgt atgccacatt
     2281 tactaataat ttgaagatct tgtcgggaca ctttggcttt gtccagggcc ttaccaaatt
     2341 gttcttccac agtgtaatcg ccataaatgt cggcgtgatc aaagcttgtg agccctaggg
     2401 aaacactctc ctgaatgagc tctgtcattt cagaggtgtc aaaatttcgg cgccaagagc
     2461 cccaatccat gcacccaaca ataaccgaag agaatgaatt tttcatgaca aaaagtttat
     2521 tttaaaatta gacattttat tgaggataaa tcggtgctaa gccctttatt tatcgtattt
     2581 tttaaccaat tattaacaag gcaattgatg aattatcatc aatttgcgac gtgaaattta
     2641 agatcgacct aaagtgttcg gtctttttta atggaaggat gtagttatgg aatctaatca
     2701 gaacccacag gatttaggaa tgctcaacga aatgattgag cgagagagcg ctatagttaa
     2761 tttgctcgca caagagatga acaaggttat tgttggtcaa aagcacatga ttgagcgtct
     2821 gctgatcgga ttattgtctc aggggcacat actccttgaa ggggttcccg gattggcaaa
     2881 gactttggca attaacacac tgtcaaaggc agtgaaaggc tcctttagtc gggtacaatt
     2941 taccccggat ttattgccgg cagatgtcat tggaacgatg atttataata tcaaaaccaa
     3001 tgattttagc atcaaaaaag ggcccatctt tgccaacttt gtcctggccg atgagatcaa
     3061 tcgtgctcca gccaaagttc aatcggcttt gcttgaagcc atgcaagaac accaagtgac
     3121 cataggcgat gagaccttta agctcgacca accatttttg gttatggcca cgcaaaaccc
     3181 tattgaacaa gaaggaacct acccgcttcc tgaagctcaa gtggaccgtt ttatgctcaa
     3241 aacagttatt gattaccccg cattggctga agaacaactc atcattcgac agaatttaaa
     3301 tggtggtttg gagtctgtaa accccgtgat taccctcgac caaattaaaa aagcgcaaaa
     3361 agcggttcgt caagtataca tggacgagaa aatagagcgc tatattctag acattatttt
     3421 cgcgacacgt cgccccgagg actataattt atccgactta aaacctctga ttagttatgg
     3481 tgcctcgccg cgcggaagca tcaacctagc gcttgcggcg aagagttatg cgtttataaa
     3541 aggcagaggt tatgttattc ctgaggatgt ccgcgcggta gttgacgatg tattgcgcca
     3601 ccgcgtcggc attacttatg aagctgaagc tgaggaagta acctccgtgg ccttgattca
     3661 tcgaatcgtt gatgtaatcg aagtccctta agccctccct tatcattagg gaatcaagga
     3721 aaagccgttt tgagcgattc tattaattaa tcaaataatt aaactgaagt ctaaattcca
     3781 gtattgtgga cacaaagacc ctcttaaaaa aagttcgtgc catagaaatc aaaacacggc
     3841 ggttaagcga ccacgtgttt ggaggagagt atcactctac cttcaaaggc cgcggaatga
     3901 cttttagcga ggtgcggtct tatcaatacg gagacgatat tcgggccatt gattggaatg
     3961 ttaccgcacg ttataatgaa ccctttgtaa aggtgttcga agaagagcgt gagcttaccc
     4021 tcatgcttat ggtcgatgtg agccagtccg agttttacgg gacccaacag caatttaagg
     4081 gggaaatgct tacagaaatt gcagcgactc tggccttttc agccttacaa aacaacgata
     4141 aaataggctt aatcttgttt accgatcaga tcgagttgtt cataccgcca aaaaagggta
     4201 aatcacacgt tttgcgtgtt attcgagaac tgttggaatt taaaccgcaa ggcaaaaaga
     4261 cagatattgg ggccgcgctg aaatatttga cctcggtgat gaaaaaaaag gcgattgttt
     4321 ttgtgctttc agattttatc agcgctccat tcttatcccc attgcgcatt gcggcacgta
     4381 agcacgatgt cacagggatt cgcgtatacg accaaagcga ggccgcgctc cctaatttag
     4441 gtatggttga aatgcttgat cgtgaaaccg gggagcggcg cctgatccac acgggaagta
     4501 aaacagtgcg gcgaaatcat catttggctt atcagaaaag ggtgactgcc tttcacgagg
     4561 ccttttcaaa atgtggtgca gggacgattg attgtagtct gcaggaaagt tatgtcaaaa
     4621 agcttttggg ctatttcaaa aacagagcgt aaggggatga gtacagcgag aaaacataga
     4681 actagcggaa tgggcctact ttggagccgt gggttttttg ggctcttgat gatcctgacc
     4741 cttgggatag gaaaacaact caatgcccag gtgaaggcct ctgtggacac cacccaaatg
     4801 cggattggtg aagaacttga gtttttgatt caggtacaag cagacagcac ggattttgtt
     4861 atgttccccg aaggaaaatc ttttggtgcc tttgaagtga tccgaagtta cgctgtggac
     4921 accctaagag accagagcaa taaacaccgt tggcaacttc taaaaaaata cgggttaacc
     4981 caatttgatt ctggttatca tcgtctgagt aagcagaggg tgatgattaa tgacagtgcc
     5041 tttgatacac ccgaattcaa tgtggccgtc ttgaccattc ctgtcgacac gacccaacaa
     5101 caaatttttg cgattaaacc ttcagcccaa gttccgttgc agagcggtcc catttggcct
     5161 tggatagctc ttactggtgt cgcattactc gccgctttat tttggtggtg gcgaataaaa
     5221 aagtctgaag cacaggcgcc agcaccaccg ccacttcccc cgtatcaaga ggcgcgtcaa
     5281 cgccttgaaa agctgagcgc tcatgagtcc ctcgagcaga ttggatttaa aggcttgtac
     5341 actgaactca ccgatgtcct gaaaacatac atccaccgtg aaatcgattc acgcgcctta
     5401 gaaagtacaa cagatgagtt attggaccga ctggagttac acagattagg ggatcatttt
     5461 gatataaaaa tagaaaccat taacgcatta ggtcagattt tgcgtcgcgc tgatttgatc
     5521 aaatttgcca aggccaatgt gaccaaagca cagtggcaag aggattttac tcaggcaaga
     5581 acaattgttg aggccttaaa ggcaagtatt cctgagcccg aacccgaaga ggaacaagcg
     5641 gcattagatg cagcggctag agccgcatta cacgccaggc aaaagcgcaa acgccaatgg
     5701 atttattcta tggctgcatt attaacagcc ggggtagctt atgtctttta tgttgggcca
     5761 caagaggccc aagatcagat ttttgggaat acaatgcgcg atttggctga aggtccttgg
     5821 tataaaagtg agtatggggt gcctgccgtt atcttggaat ccccggnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5941 nnnnnnngac ccagccccaa gagaattgga atatcgcgat ggctttaaac cgatctttag
     6001 ttttattaga agagcaaggg gcaagtaccc tgattgtaaa agatgagtct tttgaaactc
     6061 cagaggggat taaaggaata agggcttatg gtagttttta tgtggccaat gcatcaggac
     6121 aggtgggaac cgaatctcat caatacgaac tcctggtttt tgaccagcaa ggggggatac
     6181 aaacggtaat ggtggccttt gttgatgacg atcgatttgc ccaaggacta aaagaacgga
     6241 tcattaattc ggtgtcgttg gaaattccgc agaccaatca aaaacctgag acgccatgac
     6301 aagaactttt gaatttgtct cgcctgagtg gttttggtta ttggcgctag tgcccgtcat
     6361 ggttttttgg ttttggtata gccgtcgccg acacaatgct gaatggaaca tgtctgccct
     6421 aaatactgca gatcgaagta ctaacttttg gtctttggcg aagtcttttt tgtgggtgct
     6481 gcgccttgcg gccatggtgt tgattattat tgccttggcc cgacctagat atgtggacca
     6541 aagtacgcgg attaaaacct caaaaggaat tgatattgtc atggccatcg atgtttcagc
     6601 gagtatgctg gcccgtgact taaccccaaa ccgattagaa gccttaaagg aggtggccgc
     6661 ccgattnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt ataaacagtc
     6841 gtcctaacga tcgattagga ttagtggagt acgccggtga aagctatacg aaaacgccct
     6901 tgaccagcga taaaaccctg gtcttatccg cgctgaaatc cattgaatac aacacaatta
     6961 ttgaaggagg aacagctatt gggatgggat tggcaacttc ggtgaaccgc ctcaaagaga
     7021 gtcgcgcaaa aagtaaggtg ataattttac tgaccgatgg agtcaataat tctggcttta
     7081 ttgatccacg tacggccagt gaattggcgg tagaatttgg cattaaagta tataccattg
     7141 gtcttggctc taatggactg gccctttctc ccgtgggcat gagaccaaac ggccagtttc
     7201 aatatggaaa agtgcctgtg gaaatcgatg aggcattgct tcaagaaata gcccaaacca
     7261 caggaggtct ctattttcgg gcgaccaata attccaagct tggtgagatt tacgatgaaa
     7321 tcaataagct tgagaaaacc gaagtggaag agtttaaaca tcaac
//
LOCUS       DPUP01000208            3069 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_30345,
            whole genome shotgun sequence.
ACCESSION   DPUP01000208 DPUP01000000
VERSION     DPUP01000208.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3069)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1083
                     /locus_tag="DHV98_07920"
     CDS             <1..1083
                     /locus_tag="DHV98_07920"
                     /inference="COORDINATES: protein motif:HMM:PF03993.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF349 domain-containing protein"
                     /protein_id="HCK06266.1"
                     /translation="HKIWKEDIGPVAKEHREPLWQTFSEVTKIIHDKRQEFYQNRDEK
                     QSENLARKKAIIQEIKGITAQNDPNHKSWQKSVKRVQKLRDEFFDRGPVPKKENKALW
                     SEFKEATSEYNQVKNTFFKDQKKELMANLKAKKDLIMLAEKHLESTDFEQSTPVMKKI
                     QADWRNIGPVPHRDSDKIWKRFKTACNAYFEKLQSEQKLENESEQKALAKKKEILKAI
                     SNKNTTSFKEIGALELTVSQWIETGKIPVKHSPLENQFFDCVKTHLMQLGQSEQEAAL
                     TSFRLKIEGFDAQGQDQLLQQQGQLVDQKIKELKTEINQLENNLGFFQNVAQDNPLLT
                     EVHKNIAGHRNDLALWQEKKKVLRRL"
     gene            complement(1078..1851)
                     /locus_tag="DHV98_07925"
     CDS             complement(1078..1851)
                     /locus_tag="DHV98_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015363046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HCK06267.1"
                     /translation="MNNRKEQLAALDRLLTIMDELRAQCPWDRKQTFESLRHLTIEET
                     YELADAILDKDLAGMEGELGDLLLHIFFYAKIGSESQSFDITSIANAISDKLINRHPH
                     IYGDITVADEEEVKRNWEQLKLKEGKESVLSGVPNSLPAIIKASRIQDKVAGVGFDWE
                     ASHQVLDKVKEELEELSDEIVKGDKEAIEAEFGDVLFSMINYARFLGVDPESALERTN
                     KKFTKRFVYLEQQAKLQGKNIKDMTLAQMEVYWQEAKNL"
     gene            complement(1964..2389)
                     /locus_tag="DHV98_07930"
     CDS             complement(1964..2389)
                     /locus_tag="DHV98_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06268.1"
                     /translation="MSLEKIISVAGKPGLFQILTQTRTGVLAQSLIDGKKITVSAREN
                     VSLLSEIAIYTLTEEMPLGQVFQKIFDHLSSAAALSHKSSKDELEAFFFEVLPEYDED
                     RVYASDIKKVVQWYNLLVDKGLTDFSSAQPQEEVQENAQ"
     gene            complement(2447..3037)
                     /locus_tag="DHV98_07935"
     CDS             complement(2447..3037)
                     /locus_tag="DHV98_07935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003436521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HCK06269.1"
                     /translation="MIYPIVAYGDPVLRKKAQDIKVDYPNLTALIDDMFETMYAASGI
                     GLAAPQIGKSIRLFIVDATPFEDDEDLSEADRTLLSQFKKVFINAQIVQERGDEWVFN
                     EGCLSIPDVREDVFRKDEITIKYWDTDFKEQEEVFSGIAARIIQHEYDHIDGILFTDH
                     LSALKKRMIKGKLTQISKGLVRADYRMKYPLAKKKR"
BASE COUNT          970 a          667 c          583 g          849 t
ORIGIN      
        1 cataaaattt ggaaagaaga tatcggtcct gtggccaaag aacatcggga gcccctatgg
       61 cagaccttca gcgaagtgac caaaataatt cacgataaac gccaagaatt ttatcaaaat
      121 cgcgatgaaa aacagagcga aaatttagcg agaaaaaaag caatcataca agaaataaag
      181 gggatcacag cacaaaacga ccccaatcac aagtcttggc aaaaatcggt taagcgcgtt
      241 caaaaactac gggatgaatt ttttgaccga ggcccggtcc ctaaaaaaga gaacaaagct
      301 ttatggtccg agttcaagga agcgaccagt gaatacaatc aggtaaagaa tacttttttt
      361 aaggatcaaa aaaaagaact catggccaat ttaaaggcca agaaagattt gatcatgctg
      421 gccgaaaaac atctagaatc tacggatttt gagcaaagca cccccgtaat gaaaaagatt
      481 caggcagatt ggcgcaatat tggtcctgtg ccccatagag atagtgataa aatttggaaa
      541 cgattcaaaa cagcgtgtaa cgcttatttt gaaaagctgc aaagcgagca aaaattagag
      601 aacgaatcag agcaaaaagc cttagccaaa aagaaggaaa ttctcaaggc aatcagcaat
      661 aaaaacacga ccagttttaa agaaattgga gcgctggagt taactgtttc ccagtggatt
      721 gaaactggta aaattccggt gaaacacagc cccttagaaa atcaattctt cgactgtgtc
      781 aaaacgcatt taatgcaact cgggcaatcc gaacaggaag ccgcattgac cagcttccgt
      841 ctaaaaatag aaggtttcga tgctcaaggt caagatcaat tattgcaaca acagggacaa
      901 ttagtggacc agaaaattaa agaactcaaa accgaaataa accaacttga aaacaactta
      961 gggttttttc aaaatgtggc tcaagacaac cccctgttga ccgaggtgca taaaaacatc
     1021 gcaggacacc gcaatgactt ggccctttgg caagaaaaga aaaaggtttt acggcgccta
     1081 tagatttttg gcttcctgcc aataaacttc catttgggcc agggtcatgt ctttaatatt
     1141 tttgccctga agcttggctt gttgttccaa atacacaaaa cgcttggtaa attttttatt
     1201 ggtgcgttcc aaggccgatt cgggatcaac acctaaaaat cgcgcatagt taatcatgga
     1261 aaatagaaca tcgccaaact cggcctcaat ggcctcttta tctcctttga caatctcatc
     1321 agacaattct tccaattctt cctttacctt atccagaact tggtgggagg cctcccaatc
     1381 aaatccaaca cccgcaactt tgtcttgaat tctactggcc ttaattatgg ccggcaatga
     1441 atttggcact ccggacagca cactttcttt gccctccttg agtttgagtt gttcccagtt
     1501 tcttttgacc tcttcctcgt cggctacggt aatgtctccg taaatatgtg gatgtctgtt
     1561 gattaatttg tcagaaatgg cattagcgat gcttgtgatg tcaaaacttt gcgactcact
     1621 gccgattttg gcatagaaaa aaatgtgcaa aagtaagtct ccaagttccc cttccatacc
     1681 cgctaaatct ttgtcgagta tggcatcagc caattcataa gtttcttcaa tagtcaaatg
     1741 ccttaaggat tcaaaggttt gtttgcggtc ccagggacac tgtgctctta gctcgtccat
     1801 tatggtcaat agacgatcca aggcagcaag ttgctctttg cgattattca tagggtaaaa
     1861 ttaaaaaatc ctcagccgat tgactgaggt tttcaaggat attatcacct tggataaggc
     1921 taatgattaa tcgcccacga tggtaccgat ctcaataagt ctcttattga gcgttttctt
     1981 gaacctcctc ttgaggttgc gctgatgaaa aatccgtcaa gcctttatca accaaaagat
     2041 tataccactg aactactttt ttaatatcac tggcataaac acggtcttca tcatattctg
     2101 gaaggacttc aaagaaaaaa gcttctagtt cgtctttaga cgacttatga ctcaaggccg
     2161 cagcactaga taaatgatca aatatctttt ggaacacctg accaagaggc atttcttctg
     2221 tcaatgtgta aatcgcaatt tcagacaaca aactcacatt ctctcgggca ctaacggtaa
     2281 tttttttgcc gtcaatgagc gattgcgcca aaacaccagt acgggtttgt gtcaaaattt
     2341 gaaataatcc gggcttcccc gctacagaaa ttattttttc taaactcatc agtgttttat
     2401 ttacagccgg caaatatcat cgacctattg gaattttcca aatctcctat cgcttctttt
     2461 tggccaaagg gtatttcatt cggtaatcag cgcgcacaag gccttttgaa atttgggtca
     2521 atttaccctt aatcattcgt ttttttaagg ccgaaagatg gtcggtaaat aaaatcccat
     2581 caatatgatc gtattcgtgc tgaataattc gggcagcaat acctgaaaaa acttcttcct
     2641 gttctttaaa gtcagtgtcc caatatttta tggtaatctc atcttttcga aagacatctt
     2701 cacgaacatc aggaatactc aaacagcctt cattaaaaac ccattcatcc ccgcgctctt
     2761 ggacaatctg tgcattgatg aatacctttt taaattggct cagaagcgtt cgatcggcct
     2821 cagacaaatc ttcgtcgtcc tcaaaaggcg tcgcgtctac aataaatagt cttatcgatt
     2881 taccaatttg aggagccgca agcccaatcc ctgaggccgc atacatggtc tcgaacatat
     2941 cgtctatcaa agcggttaaa ttggggtaat ctaccttaat atcttgcgcc tttttccgta
     3001 aaacaggatc gccataagcc actattgggt atatcatgag tgtgttttaa gatagtcttg
     3061 taaaattat
//
LOCUS       DPUP01000209            5175 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23007,
            whole genome shotgun sequence.
ACCESSION   DPUP01000209 DPUP01000000
VERSION     DPUP01000209.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5175)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5175)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5175
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..868
                     /locus_tag="DHV98_07940"
     CDS             <1..868
                     /locus_tag="DHV98_07940"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06270.1"
                     /translation="ITTRETWSWWAPGIAVPVAQTFDQISGGQCPPNPFQFSRFYTGE
                     GPFAYVCTPAMNCSFGDGFRLVNLEEIDNSSACEGYADFTNLVANLEADTTYDLTITT
                     GYGDQHITVWIDFNDDSQFTXDEKVVTDYVIAPGSTGGTFTETMDLVVPANAPSGNHR
                     MRAKSNWQAPVPDDACELTDFGETEDYTVNIEEVLSITDQAFIDAKLKVVDLGDNRFE
                     LLINAKSDLALDMTAFNMIGQKLTNGSLSKSSTGDYQATLDLSQMATGIYLVKVHNTG
                     SNLVKTAKVIVK"
     assembly_gap    1070..1139
                     /estimated_length=70
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1157..1945)
                     /locus_tag="DHV98_07945"
     CDS             complement(1157..1945)
                     /locus_tag="DHV98_07945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06271.1"
                     /translation="MKKLFFTITVLFSLLINAQEGAIITMHAALVEGDLNAFEKVESV
                     YMKKVAQHAADRGDILAWNLLKAVRLDGVNDEEQFNYMFVQSNKSVQDILDPKNMFWN
                     LAEDVLSAEELSDLNNLRSKYTWTKDIHVVYRIESGLWFPSDPDAYKDAVIQFNFAKP
                     KDKTGFLAENSSLWKPFFAANGPKMNMLSWGTGNKIHPTGDEWASVMTWDMFSSLADL
                     FNYRLGDFSDNIEPPVRESNMNEINPGGFYQVATWRWMAGASAN"
     gene            complement(2020..3291)
                     /locus_tag="DHV98_07950"
     CDS             complement(2020..3291)
                     /locus_tag="DHV98_07950"
                     /inference="COORDINATES: protein motif:HMM:PF00884.21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06272.1"
                     /translation="MLSPLLFIYAGFAFWGYSQDISITPHLLQAILETKADIAVDLIN
                     LPFVIYLGSTALLLYGMARWRARLKSVKILSLNTFVAFMCLGLYPTLEALRPGSLQNR
                     LPYNLVYALAEYTQQPGLKLDLDPEVKRIKDQDSLLVVLVVGESVRADHLSINGYDRK
                     TTPKLSAIPGILSFPNISTTHTYTGASLPQILTNQGQERKDQRYTSIYSVWNKGGFDS
                     FWIGNQTLERSYAPVINTNDTVVLIDAFKSVFSFDKRKDADLLEPFKAFLPQASRSVV
                     SLHMIGSHWWYEDRYTDRERIFTPVIDSKYIPSLSSEQMINAYDNTLVYLDGFLASLI
                     ETLEQTKIPSVMIYISDHGEQLGEDGKWLHAQAGDAAKNPAYLMWFSQDYQRQHPETL
                     DYFKEAAKQKSTTDRVFYDLLLISGLKYLPN"
     assembly_gap    3312..3354
                     /estimated_length=43
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(3498..>3817)
                     /locus_tag="DHV98_07955"
     CDS             complement(3498..>3817)
                     /locus_tag="DHV98_07955"
                     /inference="COORDINATES: protein motif:HMM:PF01757.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06273.1"
                     /translation="LFLISGSSGALAYILLFKKLGTLGFDKLFKPLIYMGQNTVVILA
                     THLRALTLIKALLLVLLGWSVFEFTELQKFILAWVQIALLIPVIYLINRYATILNGKN
                     ASR"
     assembly_gap    3818..3917
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3918..4592)
                     /locus_tag="DHV98_07960"
     CDS             complement(<3918..4592)
                     /locus_tag="DHV98_07960"
                     /inference="COORDINATES: protein motif:HMM:PF01757.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06274.1"
                     /translation="MSYASKRLNWIDQARGLAIFMVVYGHNFPSIEPYIYSVHVPLFF
                     LISGIFQPAVVSSQQWIRRVKQLLIPYFFWATALFLFWWTVGRKFGKSSTQDLSVVDN
                     FMGVFYAQGGPEYMDWGIPLWFLPCILLVFLMHSGITRFFKGKFQSILVLILGVVGIL
                     WAKATHIHLPWSIDVAMVALIFYHLGFALKNSLKDHPYTHKWWLIALLFGVHITGFYF
                     NPEKVDM"
     gene            4737..>5175
                     /locus_tag="DHV98_07965"
     CDS             4737..>5175
                     /locus_tag="DHV98_07965"
                     /inference="COORDINATES: protein motif:HMM:PF00875.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photolyase"
                     /protein_id="HCK06275.1"
                     /translation="MKNNAVVGDVSRPALNLVWIKRDLRTQDHACFQAAEQEQIPYLP
                     IYIFDPELIAHPDTSLRHLSFIRGSIEDMNKLLEPLGRTVKSFCAPSLEVLNQLWVLF
                     DIKNIYSYQESGVQVTWERDKSVAHWCKIHGVQWSEFQQNGVQR"
BASE COUNT         1517 a         1020 c         1040 g         1383 t
ORIGIN      
        1 tattactacg agagagacct ggtcatggtg ggcccctgga atcgcagttc cggtggctca
       61 aacctttgat caaatttctg gagggcaatg tcctccaaat ccttttcaat tttctcgttt
      121 ctacaccggt gaagggccat ttgcctatgt ttgtactcct gctatgaatt gtagctttgg
      181 tgatggattc cgccttgtga atcttgaaga aattgataat tcttcagctt gcgaaggtta
      241 tgctgatttt acaaacttag tggctaatct cgaggcagat actacttatg atttgaccat
      301 taccactgga tatggtgacc aacacattac ggtgtggatt gattttaacg atgattctca
      361 gtttacnnat gacgaaaaag tcgttactga ttacgtaatt gcaccaggtt cgactggggg
      421 aacttttacg gaaactatgg atttagtggt tcctgctaat gcgccatcag gaaatcaccg
      481 tatgcgtgcc aaatctaact ggcaagctcc agttccagat gatgcttgtg agctaactga
      541 ttttggggag acagaagact atactgtaaa cattgaggaa gtcttaagta ttaccgatca
      601 ggcgttcatc gatgctaaat tgaaggtggt tgatttaggg gacaatcgat ttgagttatt
      661 gattaacgct aagtcagatt tggccttaga catgaccgct tttaatatga tcggtcaaaa
      721 attgacgaac ggatcattaa gtaaaagcag tactggggat tatcaagcta cattagattt
      781 atcgcaaatg gctacgggca tctacttagt taaagttcat aatactggat caaacctagt
      841 taaaacggca aaagtcattg ttaaataagg tacaatgtat tagaagaaaa ataaaaggcc
      901 cgttagggcc ttttattttg caatgattta attccaacag tattcaaaaa accatatttt
      961 tctgagtttt ctaaaatgca gataggtgtg gaataaaatg ttctgtgagt atgataaaaa
     1021 aaaggcgtcg tctaatggac gacgcctcaa ttaattaatg taagacctgn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna
     1141 ttaattaatg taagacctag ttggcggatg cacccgccat ccatctccaa gtagctactt
     1201 gataaaaacc accaggattg atttcattca tattcgattc acgaaccggg ggttctatgt
     1261 tatcactaaa atcgccaagg cgataattaa acaaatcggc tagtgaagaa aacatatccc
     1321 atgtcattac cgaagcccat tcatcacccg taggatggat tttgttcccc gtaccccatg
     1381 aaagcatatt catttttgga ccattggccg caaagaatgg tttccataag cttgaatttt
     1441 ctgcaagaaa acctgtctta tctttgggtt tcgcaaagtt aaactggatt acagcatcct
     1501 tgtaagcatc tggatcactc ggaaaccaaa gccctgattc aattctgtaa acgacatgga
     1561 tatcttttgt ccatgtgtat ttacttctta gattgtttaa atctgataat tcctcggcac
     1621 ttaaaacgtc ttcggccaaa ttccagaaca tatttttagg atccaatatg tcttgaactg
     1681 atttgttact ttgaacaaac atataattaa attgctcttc gtcgtttacg ccgtctaatc
     1741 ggactgcttt tagaagattc caagccaaaa tatcgcctct atcagcagcg tgctgggcga
     1801 cttttttcat gtatacagac tccacttttt caaaggcatt aaggtctcct tctacaagtg
     1861 cagcatgcat tgtaatgatc gctccctctt gagcattgat caaaagactg aataaaacag
     1921 taattgtaaa aaataatttc ttcatgagtt atgttttaat tgtttattgc aatataataa
     1981 aagacaatga ttaatcttaa gacacaaaaa aaaattgaat taattaggaa gatattttag
     2041 accactgatc agcaatagat cataaaatac gcggtctgtt gtggattttt gtttggcggc
     2101 ctctttaaaa tagtcaagag tttcggggtg ttgccgctga tagtcctgag aaaaccacat
     2161 caaatatgcg gggtttttgg ccgcgtctcc tgcttgagcg tgcaaccatt tgccatcttc
     2221 gccgagctgc tctccatgat ccgagatata gatcatcaca gaggggattt tagtttgttc
     2281 caaagtttcg attaacgagg ctagaaaacc atccaaataa accaaagtgt tgtcataggc
     2341 gttaatcatt tgctcggaac tgagcgaggg tatgtattta ctatcgatta ccggggtaaa
     2401 tatgcgctcc ctatctgtat atcggtcttc gtaccaccag tgactgccga tcatgtgaag
     2461 gcttaccaca gaccgtgaag cctgcgggag aaaagcctta aagggctcga gtagatcagc
     2521 gtctttgcgt ttgtcaaaac taaatacact tttaaaggca tcgatcagta ccacagtatc
     2581 gttagtgttg atcaccggag cgtaagagcg ttcaagagtc tgattaccga tccaaaagct
     2641 gtcaaaacct cctttattcc aaacagaata aatactggtg tacctctgat ctttacgctc
     2701 ttgcccttga ttggttaaga tttgaggcag actggccccg gtataggtat gggttgtgct
     2761 tatattcgga aagctcagaa tccccggtat ggcactgagt tttggggtag tttttcggtc
     2821 ataaccgttt atggacaaat gatcggcgcg tacgctttcg ccgaccacca aaaccactaa
     2881 aagcgaatcc tggtccttaa ttcgcttgac ctcaggatct aaatcaagct tcaagccagg
     2941 ttgttgtgta tattcagcca aagcataaac taagttatag ggaagacggt tttgtaaact
     3001 tcccggacgc aacgcttcca aagtagggta gagccccagg cacataaacg ccacaaaggt
     3061 gtttagggac aaaattttga cggatttaag acgtgcgcgc catcgagcca tgccatagag
     3121 taaaagggcg gtagacccca ggtaaattac aaaaggcagg ttgatcagat ccactgcaat
     3181 atctgctttg gtctcgagta tggcttgtaa taaatgcggg gtaatcgaaa tgtcttggct
     3241 gtagccccaa aaggcaaatc cggcgtaaat aaatagcaga gggctgagca cccagtaaaa
     3301 aattaggcga cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnccacgg
     3361 taacttgcaa ggaaatcaaa tgtacaaggt ataccagggt gtctttacca ccttgaaggg
     3421 gtatgtggta gtaagaagcg cccgtaatga gtccgaccac caagatattt aggccaataa
     3481 aaaatgacaa gtttgattta tcgagacgca ttttttccat ttaaaatcgt cgcataccga
     3541 ttgattaaat aaatgaccgg aatcagaaga gcgatctgaa cccaggccaa aataaatttt
     3601 tgcaactccg taaattcaaa cacgctccag cccaataaca caagcaataa ggctttgatc
     3661 agggttaaag cacgtagatg cgtcgccaga atcacaactg tgttttgccc catataaatc
     3721 aggggtttaa agagcttgtc aaaacctagt gtccctagtt ttttaaacag taaaatataa
     3781 gccaaagccc ccgaggaccc actgatcaaa aacaagcnnn nnnnnnnnnn nnnnnnnnnn
     3841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3901 nnnnnnnnnn nnnnnnncat atcgactttt tctggattaa aataaaaccc agtaatgtgc
     3961 accccaaaaa gtagggcaat caaccaccac ttatgggtgt agggatggtc tttaagacta
     4021 ttttttagcg caaaccccaa atggtagaaa attaaggcca ccatagctac gtctatactc
     4081 caaggcaaat gtatgtgggt tgctttggcc caaagaatac cgacgacccc taaaatgagc
     4141 accagtatag actgaaattt gcctttaaag aaacgcgtta tacccgagtg catcaaaaac
     4201 accagcagaa tacaaggcaa aaaccacaaa ggaatgcccc aatccatata ttctggccct
     4261 ccttgggcgt aaaagacgcc catgaaattg tccacaaccg ataaatcttg agtgctactc
     4321 ttgccaaact ttcgccctac ggtccaccaa aacaagaaaa gcgccgtggc ccaaaagaaa
     4381 taggggataa ggagttgttt tacgcgcctg atccattgtt gtgaagacac tacagcgggc
     4441 tgaaaaattc ctgaaatcag aaaaaacaaa ggcacatgaa cactgtagat atagggttca
     4501 atactcggaa agttatggcc gtaaaccacc ataaaaattg ccaaacctct ggcttgatct
     4561 atccaattaa gtcgctttga agcatatgac atagagcaaa tttaactgaa tctgcttagg
     4621 ttttgatcaa tttccccgaa gtcttgcgtt tagaattttg acttgtgaga cgagatttga
     4681 ttcaatgagg ttcataaatg tcataactcg ccgaatttca ttaatttcac ctcgctatga
     4741 aaaacaatgc ggttgtggga gatgtctcgc gtccagccct taatttggtg tggattaaac
     4801 gggacctgcg cacccaagac catgcttgtt ttcaggccgc agaacaagaa caaattccct
     4861 atctcccaat ctatattttt gatccagaat taatcgctca tcccgacacg agtctcaggc
     4921 atctgagttt tattcgaggc tctatagagg atatgaataa gcttctagag ccgttaggcc
     4981 ggacagtgaa atcgttttgc gcccctagtc tggaggtttt aaatcagttg tgggttcttt
     5041 ttgacatcaa aaacatttat tcatatcaag aaagcggcgt ccaagtcact tgggagcgcg
     5101 ataaatcggt ggcgcattgg tgtaaaattc atggggtaca atggagtgaa tttcaacaaa
     5161 acggcgtcca acggg
//
LOCUS       DPUP01000210           12932 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2173,
            whole genome shotgun sequence.
ACCESSION   DPUP01000210 DPUP01000000
VERSION     DPUP01000210.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12932)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12932)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12932
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..950)
                     /locus_tag="DHV98_07970"
     CDS             complement(<1..950)
                     /locus_tag="DHV98_07970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007651031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HCK06276.1"
                     /translation="MSGNNVLQTPIEYLKGVGPGRATLLRQELSINTFQDLLHLFPNR
                     YIDRTQYHKIGGLVNTGAEVQIIGTITHVDLIDQKRGKRLVAAFRDDTGTMELIWFRG
                     HKWIKQSLKTGVPLVAFGRLTQFQGQFSMAHPELELLSQHEQQRRTALQPLYPSTEKL
                     SKSGVSNRIMNQLTTQLIQEHLGPTLDPLPESIQTRLKLMDQREALTQIHFPTDHNAL
                     ARAQFRLKFEELFFIQLQLLRKNLIHKKKIKGYRFTEVGIHFNTFFNEHLPFKLTPAQ
                     KRVIKEIRQDLGANAQMNRLLQGDVGSGKTIVAFMSMLLAL"
     gene            complement(961..1473)
                     /locus_tag="DHV98_07975"
     CDS             complement(961..1473)
                     /locus_tag="DHV98_07975"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06277.1"
                     /translation="MNELLDLLLYILPGVLVALGALYVMKHQANQEQKKRHFELRRQQ
                     AKESLGIRLQAYERLTLFLSRNALSKLVLRLPAGSHEPEAYLQALIQTIEQEFDHNVS
                     QQIYVSAECWDLILMAKNKTILRLRAAGQNDWPEVSALRTALVAQTEHDADDMGRALA
                     YLKAEVAQMW"
     gene            complement(1512..2804)
                     /locus_tag="DHV98_07980"
     CDS             complement(1512..2804)
                     /locus_tag="DHV98_07980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013552471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HCK06278.1"
                     /translation="MRSPIVKSMFGFCILASISAQAQMPKELAESIDAVQAKVIDWRH
                     DFHQHPELSNREFRTAEKIAKHLKSLGLEVRTEVAKTGVIGLLHGDQPGKVVALRADI
                     DALPVTERNDLPYKSFETTTFLGTPTGVMHACGHDTHTAILMGVAEVLSQHKDKIKGT
                     VKFVFQPAEEGPPPGEEGGAKLMIKDGVLQNPAVDAIFGLHINSATPVGTIRYKSGGT
                     MAAVERFVVNINGKGTHGSAPWTGVDPILIAAKIIDGFQTIISRESPLVEEAAVITVG
                     KISAGVRFNIIPETAELIGTVRTLNPEMRALIIRRMNEMARDIAKAYNGSAEIEWQNN
                     TVVTYNDPELTAQMVPSLQSVAGKENVQTTVASTGGEDFSYYQEIVPGFFFFLGGMEP
                     GNKEPFPHHTPDFKVEDSGMALGVKALTQVALDYLNQN"
     gene            2959..5340
                     /locus_tag="DHV98_07985"
                     /pseudo
     CDS             2959..5340
                     /locus_tag="DHV98_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006261007.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
     assembly_gap    3056..3086
                     /estimated_length=31
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    5341..5440
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5460..6080
                     /locus_tag="DHV98_07990"
     CDS             5460..6080
                     /locus_tag="DHV98_07990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014034526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HCK06279.1"
                     /translation="MAELLRIYNDPPNPKAIQRVVNCLKNGGIVIFPSDTVYAMGCAA
                     FEKKAVEKLRMIDGRKKAEAPMSFICRDLGQISQLTRPLEQPVFKLLKRAFPGPYTFI
                     LPGGNDLPNSFKKRKEVGVRIPDNPIIQAVLELLDAPMVSRSIKDEDLILEYTNDPEL
                     IYEHWQYKVDLVIDGGIGGNVASTVVDLTQEPPEILREGLGSLDIF"
     gene            complement(6191..7054)
                     /locus_tag="DHV98_07995"
     CDS             complement(6191..7054)
                     /locus_tag="DHV98_07995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06280.1"
                     /translation="MTTKHLFLLLGAGLVMGSCVTKKQFTELQAKQKRTQDLLNTATV
                     KLNACEAEQATAQVRIASFEERIAELKKDKQDLIESSKDLTVLTQTGATNLEKSLESL
                     KERDLKINRLQDALNKKDSVSLAIVSSLKKEVGLDDKDIEINVEKGVVFISLSDKMLF
                     KSGSYTVTERAKEILAKVAIVINGKPDFEALVEGHTDDVPYSNGPLIDNWDLSVKRST
                     AIVRELQTLGVKPSQLIAAGRAEFNPLVANDTPANRSINRRTKIYVLPKIDQFYKMVE
                     DELENLSAQGN"
     gene            complement(7156..8178)
                     /locus_tag="DHV98_08000"
     CDS             complement(7156..8178)
                     /locus_tag="DHV98_08000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-Rha--alpha-D-GlcNAc-pyrophosphate
                     polyprenol alpha-3-L-rhamnosyltransferase"
                     /protein_id="HCK06281.1"
                     /translation="MKTAIIVLNYNGLALMQEFMAPLLRCSPQADIVVADNGSTDHSL
                     EWLRQHYPEVQIIALEENLGYAGGYNKAISLLRQPSKSQNNPRHDLYVLLNNDIKVVQ
                     GWLDPIVQAFEQEKELVAAQPKIKDLNKTQYFEYAGAAGGYLDTFGYPFCRGRVLNVL
                     EQDHGQYDDNQEIFWASGACLCLRAEAFERVGGFDSDLFAHQEEIDLCWRLQSTGGRV
                     RCLTQSSVYHKGGGTLSSANPRKSFLNFRNSLLVLIKNVAGPRIVFIILVRLILDGLS
                     GIVFILQGRPKHTWAIIKAHFSVYRLLPIYLKKRKIWANRLKYARISSILYARFFKNR
                     RYFSQL"
     gene            8401..9591
                     /locus_tag="DHV98_08005"
     CDS             8401..9591
                     /locus_tag="DHV98_08005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine--2-deoxy-scyllo-inosose
                     aminotransferase KanB"
                     /protein_id="HCK06282.1"
                     /translation="MPGFEVFGAQERAQVNEVLETGVLMRYGFDGMRQGHYKALEFEQ
                     AFAKRMGVNHCQLVSSGTAALSVALASAGIGAGDEVIMPTFTFVASFESIMMLGAIPI
                     LVDIDDTLTLDPKAVAAAITEKTKAVMPVHMCGSMADLGALKALCQEHDLILLEDACQ
                     AIGGTYNGVALGAYGDLGCFSFDFVKTITCGEGGAVITNNSQYKVNADQYQDHGHDHV
                     GSDRGAETHPTLGYNFRISELHAAVGLGQLARFDEILERQKAHYDILAAALADLPGVH
                     FRRVPQGGVQNYSFVNIFLPTAEQAEQAQKALSAAGIDACFYWFKNNWHYINGWEHLT
                     QAKSVAPLTPELKDTLLGLKSKDFRQSDHFMGRTLSFLVKLGWDEATLDHRAQIMRDT
                     LKNI"
     gene            complement(9663..>10579)
                     /locus_tag="DHV98_08010"
     CDS             complement(9663..>10579)
                     /locus_tag="DHV98_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010229684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HCK06283.1"
                     /translation="LDMMVGNNTDPMETAFTISVDLRGSGVTTGISASDRAKTIKALT
                     DEQTKPHDLSRPGHIFPLIAKEGGVLRRTGHTEAAIDFARLAGFQPAGVIVEIMNEDG
                     SMARLPQLVDVAKQFNLKLVSIEDLVAYRMEHDSLIEKKEDFELETRFGRFRLRAYLQ
                     TTNNQVHIALTKGSWSANTEVPVRVNASMVNNDLLASLTQDTHQTLDAMFHVINDHGL
                     GAMVFINQNNPSLNVLSRLTQLKSLQVAGTVVKAPQLPMDNKDFGIGAQILHDLGIHK
                     IKLISNHQQSKRVGMIGYGLEITDYISY"
     assembly_gap    10580..10692
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10693..10948)
                     /locus_tag="DHV98_08015"
     CDS             complement(<10693..10948)
                     /locus_tag="DHV98_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HCK06284.1"
                     /translation="MSQNTNTTQQDLVLDTIPEAIAAIKRGEVIIVVDDQDRENEGDF
                     LAAAQCVTPEMINFMATHGRGLICAPLTESRCNNLQLDMMV"
     gene            complement(10993..12420)
                     /locus_tag="DHV98_08020"
     CDS             complement(10993..12420)
                     /locus_tag="DHV98_08020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006990148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCK06285.1"
                     /translation="MKILDRYILTSFLKTFLSVFIILMFIFVLQTIWLYISELAGKDL
                     SFSIILKFLWFFTPKLIPLVLPLTILVTSLMVFGTLSEQYEFAAMKSTGISLQRAMRS
                     LALFILMLSAIAFVFANNVIPYSEYKWQNLRRNIAQVSPSMAIVAGQFSSIGDDFNIK
                     VQKKYGDRDQYLEEVIIHKKNPESPSENTTVIMAESGELASSEDSNTLSLILNNGHYY
                     EDIQISDGVKERINRPFAKSAFKTYTIHIDLTELNDTDIDKENNLNNHNMYNVGELIP
                     EIDRLSDVFSDDIAQMTGNMYFRSGFTQFADSTYKQIKNKTEFNSILDLYDIRQQVRI
                     AGTALDNVRSSIQALGSKKKNHQQLIKTLNKHEIALHEKFALAISCIILFFVGAPLGA
                     IIRKGGMGLPMVIAIVLFLTYHFIGIFAKNSAEDGTTHPFMATWISSFIMLPLSIWLT
                     YRATTDQGIFDFDAFFQRFKWRKKK"
     gene            complement(12425..>12650)
                     /locus_tag="DHV98_08025"
     CDS             complement(12425..>12650)
                     /locus_tag="DHV98_08025"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06286.1"
                     /translation="KLYPIDSEAEIKNMLLGIDTSTNHIYKLIQTDAKGTQFILTVKS
                     FKPNQKLTPDNFAVDLNQYQEQGYYINTLY"
     assembly_gap    12651..12704
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<12705..12905)
                     /locus_tag="DHV98_08030"
     CDS             complement(<12705..12905)
                     /locus_tag="DHV98_08030"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06287.1"
                     /translation="MELTVSDLDPSEDKSVTPSKLLTFYKEGYTYAWDIKQKVAGKNI
                     QYVKLYPIDSGAEIKNMLLGIDT"
BASE COUNT         3361 a         2735 c         2962 g         3576 t
ORIGIN      
        1 agcgcgagaa gcatactcat aaacgccact atggttttgc ccgaaccgac atcgccttga
       61 agcaatcgat tcatttgcgc gttggccccc aaatcttgtc taatttcttt gatcacccgc
      121 ttttgtgccg gggttaattt aaagggcaaa tgttcattaa aaaaggtgtt aaaatggatc
      181 ccaacttcag taaatcgata acctttaatt tttttcttgt ggatcaaatt tttccgcaat
      241 aattgaagct gaataaaaaa tagttcctca aattttaatc gaaactgggc tcgtgctaaa
      301 gcattgtgat ccgtaggaaa atgaatttgg gtcaaagcct ctcgctgatc cattaacttc
      361 agtcgtgtct gaatcgactc gggtaaggga tctaaagtgg gtccgaggtg ttcttggatc
      421 agttgcgtgg taagctggtt cattattcta ttgcttacgc cactcttact taatttttca
      481 gtggacgggt ataagggttg gagggcggtg cgccgttgct gctcgtgttg ggagagcaat
      541 tccaactcag gatgggccat agaaaattga ccctgaaatt gagtgagtct gccaaaggcg
      601 accaggggca ctccagtttt cagggattgt ttgatccatt tatggccgcg aaaccaaatc
      661 aattccatgg tcccggtgtc gtctctaaac gctgcgacga gccgctttcc tcgcttttga
      721 tcaattaaat caacatgagt gatggtccca atgatttgta cttcggctcc agtattgacc
      781 aggccgccaa ttttgtggta ctgggttcgg tcaatatagc ggtttggaaa aaggtgaagt
      841 aagtcctgaa atgtatttat cgagagttct tggcgcagca gagtggcgcg tcctgggccg
      901 acgcctttga ggtattcaat gggggtttga aggacattat taccactcat actacgcttg
      961 ttaccacatt tgagccacct ctgcttttaa atacgctaat gcgcggccca tgtcgtctgc
     1021 atcgtgttct gtttgcgcca cgagggcagt gcgcagggca ctgacctccg gccaatcgtt
     1081 ttggcctgct gcacgcagcc ggagtatggt tttgtttttt gccatcaaaa taagatccca
     1141 acattcagcg ctgacataga tttgctggct cacgttgtga tcaaattctt gttctatggt
     1201 ttgaatgagc gcctgcaggt aagcctcggg ttcatgtgac cccgcaggta agcgcaagac
     1261 taatttgctc agtgcgttac ggctcaagaa taaagtaagg cgctcgtagg cttgaagccg
     1321 tatgccgagg ctttctttgg cttgttgacg gcgaagctca aaatgtcgtt ttttctgctc
     1381 ctgattggct tggtgcttca taacataaag ggctcctaaa gccacgagca cccccggcaa
     1441 aatataaagc agtaaatcta aaagttcatt cataggttac ggtctgaaga tagattttaa
     1501 gggcacgagc gttagttttg atttaaataa tctaaggcga cttgtgttag ggctttaacc
     1561 ccaagggcca tacctgagtc ttcaacctta aaatcagggg tgtggtgtgg aaaaggctcc
     1621 ttatttccgg gctccatgcc gcccaaaaag aagaagaagc caggaacaat ctcctgataa
     1681 taggagaaat cttccccacc cgtcgaggcc acggttgttt ggacgttttc cttacccgca
     1741 actgattgca atgaaggcac catctgggct gtgagttcag gatcattata ggtcactacg
     1801 gtattgtttt gccactcgat ttccgcactg ccgttatagg cttttgcgat atcacgcgcc
     1861 atctcattca tccgtcttat gatcagcgcc cgcatttcag gattcaaggt gcgtaccgtt
     1921 ccaatgagct ctgcggtttc aggaatgata ttaaatcgga ctccagccga aattttaccg
     1981 actgtaatca ccgcggcttc ctcaactaag ggcgattcgc ggctgataat ggtctggaat
     2041 ccatcaatga tttttgcagc gatgagaatc ggatcgacgc cagtccaagg ggctgaccca
     2101 tgggtccctt ttccattgat gtttaccaca aagcgctcta cggcggccat ggtgcctcct
     2161 gatttataac ggatggtccc tacgggggtc gctgaattga tgtgcaatcc aaaaatcgca
     2221 tcgaccgcgg gattttgtaa caccccatcc ttaatcataa gttttgctcc gccttcttca
     2281 ccgggtggcg gcccttcttc ggccggttga aatacaaatt ttaccgtccc tttgatttta
     2341 tccttgtgct gagacagaac ttcagccacg cccataagga tcgccgtatg ggtatcgtgt
     2401 ccgcaagcgt gcatgactcc ggttggggtt cctaaaaagg tggtggtctc gaaactttta
     2461 taaggcagat catttcgttc ggtaacgggc agcgcgtcaa tatcggcccg cagcgcgact
     2521 actttaccgg gttgatctcc atgaagcaga ccgataaccc ctgttttagc cacttcagtg
     2581 cggacctcta gacccaatga tttgaggtgt tttgcaattt tttctgccgt gcggaattca
     2641 cggttagaga gttctgggtg ctgatgaaag tcgtggcgcc aatcgattac tttggcctgt
     2701 acagcatcaa tcgattctgc gagttctttt ggcatttgag cctgggcgct tatgcttgcg
     2761 agaatacaaa aaccgaacat agattttaca ataggcgatc tcattaaacg ggaggattta
     2821 aaatttgtaa ggattaaata tagccctttt ctctttggac tgcaagtgga gtaaatgttt
     2881 ataaattatg aaatttgacc gatgcctcct gcttcatttt ccctattttc gaggccataa
     2941 gcagacacaa atttccactt gaaaaattat ctcgaacaac tcaacgaagc ccaaaaggcc
     3001 ccagtaatcc aaaaggatgg agcgatgatt gttatcgctg gagccggttc gggcannnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnntcgc ctatttgatg caacagggtg tggatccttt
     3121 taatattctt tccttgacct ttaccaataa ggctgcgcgg gaaatgaagg agcgaattgc
     3181 ggcgatcgtc ggaaccagtg aggctaaaaa cctttggatg ggaacgtttc acagtgtttt
     3241 tgccaagatc cttcgtgtgg aggcagaacg cctcgggtac ccttctaatt ttaccattta
     3301 tgatacccaa gacagtcaga gcgtcattcg ctcgctgatc aaggacatga atttggataa
     3361 agatgtgtac aaatacaaac aggtttacag tcgcatctcc tcctataaaa acagtttgat
     3421 tacggttaag gcgtataaca ataaccctga gcttcaagag gccgatgcca tggcacgcat
     3481 gccccaactc ggggccttgt ataaaaacta tgtcgagcgc tgctttaagg ctggcgctat
     3541 ggattttgat gacttattgc tcaaaaccaa cgaactctta acgcgtttcc cagaggtctt
     3601 agccaaatat caacaacgct tccagtatat tttggtcgat gagtaccagg ataccaatca
     3661 cagtcaatac ttgatcgtcc gagcgctgag cgatcgcttc caaaatattt gtgtggttgg
     3721 agacgacgcc cagagtattt atgcgtttcg tggagcgaac ataaacaaca tccttaactt
     3781 tcaaaaggac tatgatgacg ttaaagttta tcgattagaa caaaattacc gatcgaccaa
     3841 aaccattgtg aacgcggcaa ataatgtcat agagcaaaat caaaatcgct tagacaagga
     3901 ggtatggacc cataacgatc taggagaaaa aatcggggtg catcgcagca tgactgatgg
     3961 cgacgagggt cgatttgtgg ccaatatgat atatgatacg gtcatgaatc agcatagacc
     4021 ttatgatgac tttgctatat tatatcgcac caatgctcaa tcgcgctcta ttgaagatgc
     4081 tttgcgcaaa aaggacatcc cttatcggat ctatggggga ctcagcttct atcagcgcaa
     4141 agaaattaaa gatgtcatcg cctatttgcg gttgattcta aaccccaagg atgaagaggc
     4201 cttaaaacgg gtaattaatt atcctggacg agggatcggg gatacgacca taagcaagct
     4261 tgtggtggct gccgatcaaa aaggagtttc attgtttgag attttatccg gtcttgcggc
     4321 tttagacatt ggaatcaatg caggaattcg cactaaattg gataatttca ccaccatgat
     4381 tcagagtttc caggtgctga atcagcaata caatgccttt gaaatagcag aatatgtggt
     4441 ccgccacacc gggctttatc aggaaataaa aaaagacggg acccctgaag ggatcgctcg
     4501 tttagaaaat attgaagaac tgcttaacgg gattaaggat tttgtggagg gtcaaaggga
     4561 attagcagac gccacgggca gcttggccga gttccttgag gatgtggctc tgatcaccga
     4621 tttggatcaa gacaaggaag agggccaaaa agtttctttg atgaccgtgc atttagccaa
     4681 aggattagaa tttcctgtgg tcagcattgt agggatggaa gaagacttat ttcccagtat
     4741 gctcagcatg aattctagat cggaactgga ggaagagcga cgcttatttt atgtggccct
     4801 gacccgagcc aaggaaaaag cttatctcac ttatgctcaa agccgttatc gatgggggaa
     4861 actcattgat gccgagccca gtcgtttcat tgaagaaata gacgagaaat atttggattt
     4921 actgaccccc aaaccatcgg agcgctaccg aacttttgtt gatccagatg tatttgatga
     4981 tcatgattat agccaaataa gattgcgcgg tcaaggggca aatcagagca cttcaggtca
     5041 aggatcaaaa ggcgggtatt ctagcccggg ttccaataga ggcaaatcgg caaagccaca
     5101 acccagtgcg ccgcgtttta cgccgccttc gaacttaaaa aaattaaaaa gtctaaaccc
     5161 agacttggac aaatccagtg ctcctgttga tgaagcggcc ttatcgacgc ttaaagtcgg
     5221 gactcgagta gggcacatgc gttttggaca agggacgatc gtcgccttag agggacaggg
     5281 tccagatatg aaggccgaga ttaattttga ctcggccggc ttaaaaaaat tattattgcg
     5341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ccactcgtct cctaaagtca
     5461 tggcagaact gttacgcatt tataacgatc cgcccaatcc taaggcgatt cagcgcgttg
     5521 taaactgcct taaaaacgga ggtattgtta ttttccccag tgatacggtc tatgccatgg
     5581 ggtgtgctgc ctttgaaaaa aaggctgttg aaaaactgcg gatgattgat ggccgtaaaa
     5641 aggccgaagc gcccatgagc tttatttgtc gtgatctggg tcaaatcagt caactcacgc
     5701 gcccattgga gcaaccggta tttaagctct taaaaagagc gtttcccgga ccttatacgt
     5761 ttatcttacc cggagggaat gacctgccca atagttttaa aaaacgcaaa gaggtaggtg
     5821 ttcgtattcc ggataacccg attattcagg ccgtactgga attgctcgat gcgcctatgg
     5881 tctcacgttc tataaaggat gaagatctca tattggagta taccaacgac cctgaattga
     5941 tttacgagca ttggcagtat aaagtggacc tggtcattga tgggggtatc gggggcaatg
     6001 tggcctctac ggtagtcgat ttgactcaag aaccccccga gattcttcgc gagggactgg
     6061 gttccttaga tattttttag gccgctaaaa caaaaaacac cagcgccatg ctggtgtttt
     6121 ttttctattt cgtcatccgg agtctttgac gcactgctat aggcttaatg ccctggatca
     6181 caattatttc ctaattccct tgagcagaaa ggttttcgag ttcgtcctct accattttat
     6241 agaactgatc aatttttggc aggacgtaga ttttagtccg tctgttgatc gatctattgg
     6301 ccggagtatc attggccaca agtgggttga actctgcacg cccggctgca ataagttggc
     6361 ttggtttaac ccctaaggtt tgaagttcac gaacaatcgc cgttgaacgc tttacactca
     6421 aatcccagtt atcgataagg gggccattgc tgtaaggcac atcatctgtg tggccttcaa
     6481 ccaaagcctc aaaatcaggc ttaccattga tcacaatagc gactttggcc aaaatttcct
     6541 tagcccgttc ggttacggta tagcttccgc tcttaaagag cattttgtct gaaagtgaaa
     6601 tgaataccac ccctttttct acgttgattt cgatgtcttt gtcatccaaa ccaacctctt
     6661 ttttcaggct tgacacaatc gccaaagaga cactgtcttt tttattgagc gcatcctgta
     6721 gtcggttgat tttcaaatct ctttctttaa ggctttctag tgacttctct aggttcgtcg
     6781 cgccagtttg cgttaaaacg gtcagatctt ttgagctttc aataaggtct tgtttgtcct
     6841 ttttaagttc agcgatacgc tcctcaaaag aagcaatgcg cacttgggcc gtggcttgtt
     6901 ccgcttcaca ggcattgagt ttaacggttg cggtattgag aagatcttgt gttctttttt
     6961 gttttgcttg taattctgta aactgttttt tagttacgca ggatcccatc acaagtccag
     7021 cgcctaataa taaaaacaaa tgttttgtcg tcatagtggt aggattaagt tgattcaaaa
     7081 ttaacaatta atgcccatat tcaataggcc ttaacaataa tttatacaca ggttataaag
     7141 gctttttagt gttaattata attgactaaa ataacggcga tttttaaaaa atcttgcgta
     7201 gagaattgat gaaattcgcg cgtattttaa ccgatttgcc caaatttttc gctttttaag
     7261 gtaaatgggt aacaagcggt acacactaaa atgagctttg ataatggccc aggtgtgctt
     7321 tggtcttcct tgaagtataa aaacaattcc agagagtcca tctaaaatca aacggactaa
     7381 aatgataaat acaatgcgcg gtcctgcgac atttttaatc aggactaaaa gagaatttcg
     7441 gaagtttaaa aatgatttgc gcgggttggc actgctgagg gtgcccccgc ctttgtgata
     7501 aacactcgat tgagtgaggc aacgcacgcg tccgcctgtg gactgcagtc gccaacacag
     7561 gtcaatttct tcctggtgcg caaacaaatc cgaatcaaaa ccacccacac gctcaaaggc
     7621 ttctgcgcgc aagcataaac acgccccgct ggcccagaaa atctcttggt tgtcatcgta
     7681 ctgtccgtga tcctgttcca aaacattgag cacgcgcccc cgacaaaacg gatatccgaa
     7741 agtatctaaa tagccccctg cggctccggc gtattcaaag tattgggtct tatttaaatc
     7801 ctttattttc ggttgtgcgg caaccaattc tttttcctgc tcaaaggcct gaacaatggg
     7861 gtcaagccaa ccctgaacca cttttatgtc gttgttaagc aaaacgtata aatcgtgccg
     7921 gggattgttc tggctttttg agggttgcct cagtagagaa atggctttgt tatatccgcc
     7981 cgcataaccc agattttctt ctagggcaat aatttgaacc tcaggataat gttggcgaag
     8041 ccactccaag gaatgatcgg tagagccgtt atcagcgacc acgatatccg cctgaggact
     8101 gcaacgcagc aagggggcca taaattcttg catcaaggcc agtccgttat agttcagtac
     8161 gattattgcc gttttcacgg gcgcaattta aggcaaaaaa ttctcatggt tgttctattg
     8221 cgccacgcat gacccgcttg tgatcaacgc cgtggcatcg cggtagggga ctccgggtaa
     8281 aatgacgtgg ggtacgaaca aaatatggcc gttagattgc acaaaaatgg cgcaaccttt
     8341 acctttactc agaatctaaa tatcgattgc cttattgggc gatgacacca atagaaatat
     8401 atgccaggat ttgaagtatt tggcgctcaa gaacgcgctc aggtcaatga agttttagaa
     8461 accggtgttt tgatgcgcta tggttttgat ggaatgcgtc aaggccatta taaagccctt
     8521 gagtttgagc aagccttcgc caaaagaatg ggcgtaaacc actgtcaatt ggtctcaagt
     8581 ggaacagcgg ccttgagtgt ggctttggct agtgcaggaa tcggggcggg cgatgaggtg
     8641 atcatgccca catttacctt tgtggcgagt tttgaatcga ttatgatgtt gggggccatt
     8701 cctattcttg tagacataga cgacacctta acgcttgatc caaaagctgt tgctgcggcc
     8761 attactgaaa agactaaagc ggtaatgccg gtgcatatgt gtggttcaat ggcagattta
     8821 ggcgcgttaa aggccttgtg ccaagagcac gatcttattt tgttggagga cgcttgtcag
     8881 gctattggcg gaacatataa tggggttgcg ctgggagcct acggtgattt aggttgcttt
     8941 tcttttgact ttgtcaagac cattacttgt ggtgaaggcg gcgcagtgat tacgaataat
     9001 tcccaataca aggtgaacgc cgaccaatat caagaccacg gtcatgacca cgtgggcagt
     9061 gatcgcggtg ccgagaccca tcctactttg ggctataact ttcgtatttc tgaactgcac
     9121 gctgccgttg ggctggggca gctcgcgcgt tttgacgaaa ttttggaacg tcaaaaggcg
     9181 cattacgata ttttagctgc agcactcgcc gatttgccgg gggttcattt tagacgtgtt
     9241 ccccagggcg gtgttcaaaa ttattctttt gtgaatatct ttttacctac agcagaacaa
     9301 gccgagcaag cccaaaaggc tttgtcagcg gccggaattg acgcttgttt ttattggttt
     9361 aaaaacaatt ggcattacat aaacggttgg gagcatttga ctcaggccaa gagtgtggcg
     9421 cctttgaccc cagaacttaa agacacgctt ttaggactca aatccaagga ttttaggcaa
     9481 agcgatcatt ttatgggccg gaccttgagc tttttggtca aactcggatg ggatgaagca
     9541 accttagacc atcgggccca aatcatgcgg gatactttaa agaatatcta ggtaatctgc
     9601 ggcatacgtc gcgatgagtc tgcctgtaaa ttcggcatta agcgtgttga atacaaacgt
     9661 gtttaatacg aaatatagtc ggttatttca aggccataac caatcattcc tacacgtttg
     9721 ctttgctggt gattcgaaat caatttgatt ttgtgaatcc ctaaatcgtg taaaatctgt
     9781 gcgccaatac caaaatcttt gttgtccata ggcagttgcg gtgctttgac gaccgttccc
     9841 gccacttgaa gcgatttgag ctgggtcaag cggctcaaaa cattcaagga aggattgttt
     9901 tggttgataa ataccatcgc ccctaaacca tggtcattaa tcacatggaa catggcgtct
     9961 agggtttggt gggtatcttg ggtcagtgat gccagaagat cattattgac catagaggca
    10021 ttgacccgaa cgggcacttc ggtattggca ctccatgaac ctttggtaag ggctatgtga
    10081 acttgattgt tcgtggtctg cagataggct cttagtctga agcgaccaaa gcgggtttcg
    10141 agttcaaagt cttccttttt ttcgatcaaa gagtcgtgtt ccatgcggta ggcgaccaaa
    10201 tcttcaatag aaactaattt taaattaaac tgttttgcca catcgaccag ttggggtaaa
    10261 cgggccatgg aaccgtcttc attcatgatt tcgacgataa ctccagcggg ctgaaatcca
    10321 gcaagccggg caaaatcgat tgcggcttcg gtatgtccgg tgcggcgtaa gaccccacct
    10381 tctttagcaa tcaagggaaa aatatgcccc gggcggctta aatcgtgggg tttggtttgc
    10441 tcgtcggtca aagccttaat ggttttggcg cgatctgagg ccgaaatccc tgtagtgacc
    10501 cctgaaccac gtaaatcgac cgaaatggta aaggcggttt ccatgggatc cgtgttattg
    10561 cccaccatca tgtcaagctn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10681 nnnnnnnnnn nnccaccatc atgtcaagct gcagattgtt acaacgcgat tctgttagtg
    10741 gcgcacaaat gagtccacga ccatgagtgg ccataaagtt gatcatctct ggggtaacac
    10801 attgggctgc cgctagaaaa tcaccttcgt tttcacgatc ctgatcatcc accacaatga
    10861 tcacttcacc ccgcttaatg gctgcgatgg cctcgggaat cgtgtccaaa actaggtctt
    10921 gttgtgtggt gttggtgttc tggctcatgc gtcaattttt tctatgggtg caaatatagg
    10981 gattgacccc gactatttct ttttgcgcca tttaaaacgc tggaaaaagg cgtcaaagtc
    11041 aaaaatgcct tgatctgttg tcgcgcgata ggtcaaccaa atactcaggg gaagcataat
    11101 gaaactactg atccatgtag ccataaaagg atgcgtggtt ccgtcttcag cgctgttttt
    11161 ggcaaaaatg ccgatgaaat gataggttaa aaacaagaca atcgcaataa ccatcgggag
    11221 tcccataccg cctttacgta tgatcgctcc aagcggggcg cccacgaaaa acaaaataat
    11281 gcacgatatg gctaaagcaa atttttcgtg tagggctatt tcgtgtttat tcagcgtttt
    11341 aatcagctgt tggtgatttt tctttttcga ccccagcgcc tgaattgagc ttcggacatt
    11401 atccaatgcc gtcccggcaa tgcgtacttg ttgacgaata tcgtaaaggt ccaagatcga
    11461 gttaaattct gtcttgtttt tgatctgttt ataggtggaa tccgcaaatt gagtaaaacc
    11521 gctgcggaag tacatattac ccgtcatttg agcgatatca tcactaaaca catcagagag
    11581 gcgatcgatt tctggaatta actcgcccac attatacata ttgtggttgt ttaagttgtt
    11641 ttccttgtca atgtctgtgt cgtttaactc agttaaatca atgtgtatgg tgtaggtctt
    11701 aaaggcgctt ttggcaaagg gtcgattgat ccgttctttg accccatcac tgatttgaat
    11761 atcctcgtaa taatgcccat tgtttaatat caaagaaagg gtgttcgagt cttcagaact
    11821 ggcaagttcc ccagattcag ccataattac ggtcgtattt tcgctagggc tttctggatt
    11881 ttttttgtga ataatgacct cttctaaata ctgatcgcga tccccgtatt tcttttgaac
    11941 cttgatatta aaatcatccc caatcgaact gaattgtccc gctacgatgg ccattgacgg
    12001 actgacttgg gcaatatttc gccgcaaatt ttgccattta tattccgaat aggggatgac
    12061 gttgttggca aatacaaaag caatggcgga aagcattaaa ataaataggg ctagactccg
    12121 catggcgcgc tgaagcgaaa tcccagtgga cttcatggcg gcgaattcat attgctctga
    12181 gagggtgcca aaaaccatca aggaggtgac caaaatggtc aatggcaaca ccagtggaat
    12241 taattttggt gtgaaaaacc acaaaaactt taagataatt gaaaatgata agtcttttcc
    12301 cgccagctct gagatgtata accagatggt ttgcagtaca aaaatgaaca tcaaaataat
    12361 aaagacgctt aaaaacgtct ttaaaaaact ggttaatata tagcggtcta aaattttcac
    12421 ctgcctagta aagcgtattg atgtaatagc cttgttcttg atattggtta aggtctaccg
    12481 caaaattatc tggagtcaac ttttggttgg gcttaaatga ctttacggtc aagataaact
    12541 gagtgccttt tgcgtcggtt tgaatgagct tataaatgtg attggtgctg gtatcaatac
    12601 ccaagagcat gttttttatt tcagcctcgc tatcgatagg atagagcttg nnnnnnnnnn
    12661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnggtatc aatacccagg
    12721 agcatgtttt ttatttcagc cccgctatca ataggataga gcttgacata ttgtatgttt
    12781 ttccccgcaa ctttttgttt gatgtcccaa gcataggtgt atccctcttt ataaaaagtg
    12841 agcagtttag aaggggtaac gcttttgtct tctgaaggat ccaaatcgct cacggtgagt
    12901 tccatatcct caggagcgat cgtaaatagc tt
//
LOCUS       DPUP01000211            6946 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11643,
            whole genome shotgun sequence.
ACCESSION   DPUP01000211 DPUP01000000
VERSION     DPUP01000211.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6946)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6946)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6946
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            146..559
                     /locus_tag="DHV98_08035"
     CDS             146..559
                     /locus_tag="DHV98_08035"
                     /inference="COORDINATES: protein motif:HMM:PF00903.23"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bleomycin resistance protein"
                     /protein_id="HCK06288.1"
                     /translation="MNPQFHLSLPCRHLEATRRFFTEIIGATVGRQSNLWCDINLFGH
                     QITYTKCGAFRFDYPNYSFEKTILPSFHFGVVLKPAAWNELHDRLEREEFLHTPATEF
                     LAGRVGAHRSFFVKDPNGFLIEFKCFDQDDEVFAH"
     gene            complement(532..1938)
                     /locus_tag="DHV98_08040"
     CDS             complement(532..1938)
                     /locus_tag="DHV98_08040"
                     /inference="COORDINATES: protein motif:HMM:PF09594.8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyltransferase"
                     /protein_id="HCK06289.1"
                     /translation="MKALRHNHIALLAVTFLLLCIGYFLIGHHISRSQTNILLSAYAG
                     LWLLSWPWLRVVSAPLDKGLTSWKKDLYAGLILRILLIFSWPSLSQDVYRFLWDGALF
                     AQGISPYLYTPNSIINQQELLGITLPNSGALLSAMGSLSANNFSNYPPIKQLIFALPH
                     WLGIRGIIAQIWVLRIIIILADMAVFFLGRRLLLNRSLNPKYINWYFLNPLIILELTG
                     NGHFEGLMAVCILASILLLERKKYLTSGIMLGIGIGLKLIPLMLLPVLGAFVAGRCKK
                     SQTIKPIRLFITGVIGTLGLIFLPMLSAETIAHYTATTGLWFTKFEFNASIYYVLRWI
                     GFQWKGYNLIAQIGPALSLITALSIFYLSYRVWTQKSNIYQAMMGSILIYLLCATTVH
                     PWYWTTVLALSILTQSRIGLLGSMLVFLSYTAYGEELVQESWLWLSLEYLLLFAYLFW
                     ELKNSKAQKDQWAKTSSS"
     gene            complement(1950..>2625)
                     /locus_tag="DHV98_08045"
     CDS             complement(1950..>2625)
                     /locus_tag="DHV98_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06290.1"
                     /translation="GNYVWPVYDSFDIFVADLQGNITGQLTNEPGYDAEATVSPKGDK
                     IVFTSTRSGDLELYTMNIDGSNVTQITDELGYDGGAFFSPDGTQIIFRSSRPKTPEAI
                     EKYKTLLADGLVEPTEMELFICNADGSDRRQLTRLGNANWSPFFHPSGDKILFSSNFE
                     AERGFPFNLYMIDTDGKNLTRITQSETFDAFPVFSNDGKYLVFSSNRNNGGTRDTNLF
                     IAEWQD"
     assembly_gap    2626..2784
                     /estimated_length=159
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2785..3074)
                     /locus_tag="DHV98_08050"
                     /pseudo
     CDS             complement(2785..3074)
                     /locus_tag="DHV98_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080624.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3220..4458
                     /locus_tag="DHV98_08055"
     CDS             3220..4458
                     /locus_tag="DHV98_08055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M28"
                     /protein_id="HCK06291.1"
                     /translation="MRTITVLFSLLILSSCGAPSGAPVDQLKTDVVYLASDELEGRET
                     GTKGEQLAADYLAQRFAALGLSPKGVEDYRQKFSYKPSTNPHEQTKVDAPSQDQGMPQ
                     GINVIGYKDNGADKTVIIGAHFDHLGWGGEGSLYRDSIPSVHNGADDNASGVALLLYL
                     AERLKDEKNTQSNYLFIGFSGEEKGLLGSNYFAKNPTIDLASVNVMINMDMVGRLNEE
                     NTLAVHGVGTSPRFKQLLFANNDFGLNIAEHESGVGPSDHTSFYLMDLPVLHFFTGQH
                     EDYHKPSDDADKINYPGLETIGQYIYALVTDLDDDPKLSFRKTKNESEETPRFKVGLG
                     VIPDYLYTGTGMRIDGVSEDKPAQKAGLQKGDVVVRLGDSTVTDMMSYMRALSVFKQG
                     DSTQATIERGAESLEFRIDF"
     gene            complement(4464..5468)
                     /locus_tag="DHV98_08060"
     CDS             complement(4464..5468)
                     /locus_tag="DHV98_08060"
                     /inference="COORDINATES: protein motif:HMM:PF09982.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06292.1"
                     /translation="MIKIFHYIALLFLIVSSSLNGQTLIASKEQHLESQTQRIDSLES
                     TLWSPDYFDQFELRQDNDFLHFTDRYYSTGSFLGLHRWLPLSPKQLEQRQTRQYSLVL
                     YQEIYTPTDLLTDKIKFLDRPYAGFIGLNNGLTVTRRAHLNRYNFVFGIAGPWSGSET
                     VQSAFHNSATVDSKIATWLSQVDNSFHLNAYYEYVREWQWNPKPFAVYFSLNPKAALG
                     TKDAYVEQDVVFYFGRRSSLQKSMAYGQLLGRETELFFSTRFGYRYVLHDAMLQGNWL
                     GDNSVYTVTPYRMMYFFNVGFFWRYKRNDVFLKYHYESARNRSAEPHLYVSLSYSRRY
                     "
     gene            complement(5476..>6946)
                     /locus_tag="DHV98_08065"
     CDS             complement(5476..>6946)
                     /locus_tag="DHV98_08065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008867085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HCK06293.1"
                     /translation="ALCLFIVLLFAVTQVLLFHKFKGARNLFTKNQLPPLSLKDDLPS
                     VTIQLPIYNEQNVIQALIRQVAAIQYPMDRLEIQVLDDSTDQTTAMVGALVSKLNAKG
                     IPIRHLHRRHRTGFKAGALKEGLAAATGEFIAIFDADFLPQSDWLLRSMPYFKDPKIG
                     VVQTRWGHLNRAHSILTRVQAFALDLHFGLEQIGRQAHGVFMNFNGTAGIWRKSCIEE
                     AGNWSGTTLTEDLDLSYRAQLKGWRILYRPDIITPAQLPQSVQAARSQQFRWNKGGAQ
                     NFRQLWRRLWAKKDLSLKEKVFGTAHLFSSSIFFLVLILIVLSLPLLWIKNSHPQWSW
                     IFYLFQSFGLTTLLFLWSYTGAYKMFNTQRNLSWAQAFFDFIVFFTLAIGLSANNAIA
                     VIQGHLGVITPFVRTPKVNTVNAKRGDRVKTRANYSAGGAIAPIVLELFLMLYALFGL
                     FLATKMGTTGDYGLAPFHILCILGFGYLLIKSIFDRFKH"
BASE COUNT         1963 a         1421 c         1566 g         1837 t
ORIGIN      
        1 tctttcccta cacgacgctc ttccgatcta tgacgacaat gattacgacg acgaagaaaa
       61 agacagcaca gatacccctg aattatccga tgaggacggt gaagaggaag attattaaat
      121 aataattgat ttctatctaa agatcatgaa tccacaattc catttgtctt tgccttgtcg
      181 ccatttggag gcaacgcgtc gtttttttac cgaaattatt ggcgccacgg ttgggcgcca
      241 atcaaattta tggtgcgata ttaatctttt tggccatcaa attacctata ctaaatgtgg
      301 ggcctttcga ttcgactacc ctaattatag ttttgagaaa actattttgc cctcgtttca
      361 ttttggcgtg gtgttaaaac ctgcggcctg gaatgaactt catgatcgtt tagaaagaga
      421 agaatttttg cacactccgg ccaccgagtt tttagcgggt cgcgtggggg cacaccgctc
      481 attttttgtc aaagatccta atggattttt gattgagttt aagtgttttg atcaagacga
      541 tgaggttttt gcccattgat ccttttgggc tttagaattt ttgagttccc aaaatagata
      601 ggcaaaaaga agcaaatact ctagactaag ccaaagccat gactcttgga ctagttcttc
      661 tccgtaggcc gtataactta gaaatacgag catactcccc aacaaaccga tacggctttg
      721 tgtcagtata cttaatgcca gcaccgtggt ccaataccaa ggatgtactg tggtggcgca
      781 gagcaggtaa attaaaatgg accccatcat cgcttggtaa atattgcttt tttgggtcca
      841 aacccgataa cttaaataaa aaatactgag cgcggtaatt aaggagagtg cgggtccaat
      901 ttgggcaata agattataac ctttccactg aaatccgatc cagcgcagca cataatatat
      961 actggcatta aattcaaatt ttgtaaacca aagacctgtt gttgctgtgt aatgggctat
     1021 tgtttctgcg ctgagcatag ggagaaatat aagccctaga gtcccaataa ctcccgtaat
     1081 aaataagcgt atgggtttga tcgtttgact ttttttacat ctacctgcga cgaatgcccc
     1141 gaggaccgga aggagcatca aggggattag tttaaggcca attcctatgc ccaacatgat
     1201 gcctgaagtc aaatattttt tgcgctccag cagcaaaatg ctggccaaaa tacacacggc
     1261 cataagtccc tcaaagtgac cgttccccgt caattcaagg atgatcaatg ggtttaagaa
     1321 gtaccaattg atgtatttag gattcaatga acgatttaac aataagcgac ggcccaagaa
     1381 aaatacggcc atgtctgcca gaattataat gattcttaaa acccatattt gcgctataat
     1441 cccacgaata ccgagccaat gaggtagggc gaagatcaat tgttttatcg gggggtaatt
     1501 gctgaaatta ttggcgctca aagaccccat ggcacttaac aacgccccgg agtttgggag
     1561 cgttatgccc aggagttctt gctgattgat tattgaattt ggcgtgtata aatagggtga
     1621 aattccttga gcaaataagg cgccgtccca taaaaatcga taaacatctt gtgagagact
     1681 aggccaagag aaaatcagta aaatcctgag gattaggcct gcatataaat ccttcttcca
     1741 tgaggttaag cccttatcta gtggggcgct caccacacgc aaccaaggcc agctcaataa
     1801 ccataatcca gcgtaggcgc taagaaggat attggtttgg cttcggctta tatgatgccc
     1861 aatgaggaaa taaccgatgc aaagcagcag gaaagtaacc gcgagtaaag caatatggtt
     1921 atgccgcagg gccttcatgg cctgttagtt taatcctgcc actcggcaat aaacaagttt
     1981 gtatcacgtg ttcccccatt atttctattt gaggaaaaca ctaaatactt gccgtcatta
     2041 ctaaagaccg gaaaggcgtc aaaggtttca ctctgcgtaa tacgcgttag attctttccg
     2101 tcggtatcaa tcatataaag attgaaagga aatccgcgct cagcctcgaa attactggaa
     2161 aataatattt tgtccccgct cgggtgaaaa aatggactcc agtttgcatt gcccaaacgc
     2221 gttaactgtc gtcggtcaga gccgtcggca ttacagataa acaattccat ttctgtaggt
     2281 tccacgagtc catctgccaa taaagtcttg tatttttcga tggcttcagg tgtttttggt
     2341 cgtgaagaac ggaaaataat ttgggtgcca tcgggcgaga aaaatgcgcc gccatcataa
     2401 cctagctcat cggtaatttg cgtgacattc gagccgtcaa tattcatggt atacaattct
     2461 aaatccccac ttctcgttga ggtaaataca attttgtccc cctttggaga gacagtggct
     2521 tcagcatcat aaccgggttc attagtgagt tgcccggtaa tattgccctg taggtctgcc
     2581 acgaaaatat cgaagctatc gtaaaccggc caaacgtaat tacctnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnnnn nnnncaggcc tcattatcca aatgtgttga agcatagacg
     2821 aaatgagtgt tgtccggtaa aaaataacca catgtggttc gtccctttcc cgttgaaatc
     2881 atcggaggtt gattggctga aaattcttca tcgacattca tgagaaacat ttgatcgcaa
     2941 cctacgcccc aatcggcatt gtttgattga aaaagaagtt gctgatcgtc aaaacgccaa
     3001 taggcttcag cattgtcgcc tccaaaagtg acttgacgca atgatttaaa atgcgtctct
     3061 tccggataga tgagcagatt atcaggcgca gtattttgcg ccgtcacttc ttgggggtct
     3121 tgcttctgtt gtttttgacc acaggcagca aaaatcaaaa gcaataatac aaggtgtagg
     3181 tttctcattt ttggactatt tttgtgcaaa aataaagata tgcgcacaat tacagtcctt
     3241 ttttccttat tgattttatc ttcttgtggg gccccttctg gggctcccgt cgaccagctc
     3301 aaaacagatg tagtctattt ggcgtctgat gaattagagg gtagagagac ggggacaaaa
     3361 ggagagcaac tggctgctga ctatttggct cagcgttttg ctgccctggg actttcccca
     3421 aaaggagttg aggattaccg tcaaaaattc agttataaac ccagtacgaa tccccatgag
     3481 caaaccaaag ttgatgcgcc gagccaagac caggggatgc ctcaaggaat taacgtgatt
     3541 ggttacaaag acaatggtgc ggataagacg gtgatcatcg gagcgcattt cgatcattta
     3601 ggatggggtg gtgaagggtc cctttatcgc gatagcattc ccagtgtcca taatggagca
     3661 gacgacaatg ccagtggtgt tgctttactt ttgtatttgg cagagcggct caaggacgag
     3721 aaaaacaccc aaagtaatta tttgtttatt ggattttctg gtgaagaaaa aggtctgtta
     3781 ggatcaaatt actttgcaaa aaacccaacc atagatttgg cctctgtaaa cgtgatgatc
     3841 aatatggata tggtggggcg tctgaatgaa gaaaatactt tggccgtcca cggagtaggg
     3901 acctcaccaa gattcaaaca actccttttt gccaacaatg attttgggtt gaacattgca
     3961 gagcatgaaa gcggtgttgg cccctcagac catacttctt tttatttaat ggatttaccg
     4021 gtacttcatt tttttacagg gcagcatgaa gattatcaca agccctcaga tgacgcggat
     4081 aaaatcaact atccaggatt agaaaccata ggacaatata tctatgcctt agtcactgat
     4141 ctcgacgatg accccaagtt gagtttccgc aaaacgaaaa atgagagcga agaaacgcct
     4201 cgctttaaag taggattggg tgttattccg gattatctat acacgggaac gggaatgcgc
     4261 atcgatggcg tgagtgaaga caagccggca caaaaagcgg ggcttcaaaa aggagatgtt
     4321 gtggttcgtc taggagacag tacagtgacc gatatgatga gttatatgcg cgcactgtct
     4381 gtgttcaagc aaggcgattc aacacaggcg actatcgagc gcggcgccga gtctcttgag
     4441 tttcggatcg atttttaagg ccatcaatag cgtcgactgt aggacaatga aacgtagagg
     4501 tggggttcag cgctgcgatt gcgggctgat tcgtaatgat atttgaggaa gacgtcattt
     4561 cgtttgtagc gccaaaaaaa gccgacatta aaaaaataca tcattcgata aggggtaacc
     4621 gtatagactg agttgtcacc aagccaattg ccttgtaaca tggcgtcgtg tagcacgtaa
     4681 cgatatccaa agcgggtgga aaagaacagt tctgtttcgc gtcccagtaa ttggccatac
     4741 gccatactct tttgaagaga agatcggcgt ccaaaataaa atacgacatc ttgctcgaca
     4801 taagcgtctt tggtgcccag tgctgccttt ggatttaagg aaaagtaaac ggcaaaaggc
     4861 ttgggattcc attgccattc acggacatat tcgtaatagg cattgagatg aaaactatta
     4921 tctacttgag aaagccatgt ggcaatttta gaatctaccg ttgccgaatt gtgaaaggcg
     4981 ctttgaacag tctctgaacc agaccatggg cccgcaatac caaaaacaaa attataacga
     5041 ttcaaatgtg ctctgcgggt aacggtcagt ccattattaa gaccaataaa gccagcatag
     5101 gggcggtcta agaattttat tttgtcggtc aaaaggtctg taggggtata aatttcctga
     5161 tacaggacta agctgtattg acgggtttgt ctttgctcca gttgcttcgg ggaaagaggg
     5221 agccatcggt gcaatcctaa aaagcttccg gtagagtagt agcgatcagt gaaatgtaaa
     5281 aaatcattgt cttgacgcag ttcaaattga tcaaaataat caggggacca caaggtgctt
     5341 tctaatgaat caatgcgttg tgtttgggat tccagatgtt gttctttcga cgcgattaag
     5401 gtttgcccgt tcagacttga actgacgatc aaaaacagca acgctatgta atgaaagatt
     5461 ttgatcatgc cccgttcaat gcttaaacct gtcaaaaata ctttttatta aaagataacc
     5521 gaaacccaag atacagagta tatgaaatgg ggctaaacca taatcaccag tcgtacccat
     5581 ttttgtggcc agaaataagc caaaaagcgc ataaagcatc agaaatagtt ccaaaacaat
     5641 aggggctatt gccccccccg cggaataatt tgcccgagtc ttgacccgat cgccccgctt
     5701 tgcgttaacc gtattgactt ttggcgtgcg tacaaatgga gtgattaccc caaggtgtcc
     5761 ttgaataaca gcaatggcgt tgtttgctga aaggccaatg gcgagggtga aaaagacaat
     5821 gaaatcaaaa aaggcctgcg cccaagatag gttgcgctgt gtattaaaca ttttataggc
     5881 tccggtatag gaccagagga acagtagtgt ggttaggcca aaagattgga ataaataaaa
     5941 aatccaggac cattgtggat gactgttttt aatccataat aggggtaaac tcaggacaat
     6001 aaggatcaga accaaaaaaa atatcgagct gctaaacaaa tgggccgtgc caaaaacttt
     6061 ttctttaagg ctcaggtctt ttttagccca taagcgacgc caaagttgcc tgaaattttg
     6121 tgccccacct ttattccatc tgaattgttg acttcgtgcg gcttgaacgc tctggggtaa
     6181 ttgtgccggc gtaataatgt ctgggcgata caggatccgc catcctttga gttgggcgcg
     6241 atagctcaga tcaaggtctt cggttagcgt cgtgccggac caatttccag cctcttcaat
     6301 acaggatttg cgccagattc cggcagtccc attaaaattc atgaatacgc catgggcttg
     6361 tcgtccgatt tgctcaagac caaagtgtaa atccagggca aaggcctgaa cccgtgtcaa
     6421 aattgaatgc gctcggttga ggtgtcccca gcgggtttgc accacgccaa tttttggatc
     6481 cttgaagtag ggcatactgc gcaagagcca atcgctttgc ggcagaaaat ccgcgtcaaa
     6541 aatggcgata aactcacccg tagccgccgc taaaccctct ttgagggcgc ctgctttaaa
     6601 tccagttcta tgtcttcggt gtaggtgtct gattgggatt ccttttgcat tgagcttaga
     6661 aacgagcgcg cccaccatgg ccgtcgtctg gtctgttgaa tcatcgagca cctgaatttc
     6721 gagacgatcc attggatatt gtattgccgc cacttgtctt atgagcgctt ggatcacatt
     6781 ttgctcattg taaatgggca gttgaatcgt tacgctaggt aagtcgtctt ttagactcag
     6841 ggggggcaat tggttttttg tgaataggtt tctcgcccct ttaaatttgt gaaaaagcag
     6901 gacctgtgtt acggcaaaga gcaatacgat gaacaggcaa agcgca
//
LOCUS       DPUP01000212           13990 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10544,
            whole genome shotgun sequence.
ACCESSION   DPUP01000212 DPUP01000000
VERSION     DPUP01000212.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 13990)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 13990)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13990
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(83..>409)
                     /locus_tag="DHV98_08070"
     CDS             complement(83..>409)
                     /locus_tag="DHV98_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCK06294.1"
                     /translation="LQNGLKERGFDIGTTQSCVTPVYLKGSIPEAMALVKDLRESHGI
                     FCSIVVYPVIPKGLILLRLIPTASHTLEDVAETLDAFSSIRSRLENGTYKRLSEALMQ
                     QAVAQE"
     assembly_gap    410..622
                     /estimated_length=213
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<623..1480)
                     /locus_tag="DHV98_08075"
     CDS             complement(<623..1480)
                     /locus_tag="DHV98_08075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008271273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HCK06295.1"
                     /translation="MRDLFDKIYKDKGPLGKWAEQAEGYFVFPKLEGEISNRMRFQGK
                     EVVTWSVNDYLGLANRPEVRKADAEAAAKYGSAYPMGARMMSGHTDLHEQLQRELAAF
                     VNKEAAYLLNFGYQGILSTIDALVSKDDVIVYDVDAHACIIDGVRLHMGQRFTYKHND
                     LESIEKNLMRAERVAEKTGGGILLISEGVFGMRGEQGRLKEIVALKKKYNFRFLVDDA
                     HGFGTLGKTGAGAGEEQGVQDQIDVYFATFAKSMASTGAFIAADQEIINYLKYNLRSQ
                     MFAKSLQMQL"
     gene            complement(1683..2726)
                     /locus_tag="DHV98_08080"
     CDS             complement(1683..2726)
                     /locus_tag="DHV98_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013552155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-synthase"
                     /protein_id="HCK06296.1"
                     /translation="MHDLNVHDSVLDLIGKTPLVRLTKVVSDFPGNFWAKMESFNPGH
                     SAKDRIAAFIIEEAERSGLLTPGATIVETTSGNTGFSLAMVSVLKGYKCILAVSSKSS
                     PDKIDMLRSMGAEVHVCPANVPADDPRSYYKVAQRLHEKTPGSIYINQYFNALNTAAH
                     YHSTGPEIWQQTNGKITHLVACSGTGGTISGTAQYLKEQNPEIEIIGIDAYGSVLQKY
                     HETGELDKDEIYPYRIEGLGKNLIPTATDFSVIDRFIKVTDQDSAWAARTLAQKEGLF
                     MGYTSGAALQGLFQLNEERSFDQNSVVVVIFPDHGSRYMSKVYNDQWMIDQGFMQESS
                     PQKSKTSESTQTL"
     gene            complement(2793..4856)
                     /locus_tag="DHV98_08085"
     CDS             complement(2793..4856)
                     /locus_tag="DHV98_08085"
                     /EC_number="3.4.21.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093110.1"
                     /note="PtrB; oligopeptidase that cleaves peptide bonds
                     following arginine and lysine residues; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
                     /protein_id="HCK06297.1"
                     /translation="MAPKNMTPPLADAKEKYIEMHGDVRLDPYYWLNDREDEEVLDYL
                     ERENDYHGKMTAHTKDFQADLFQEMKARIKEDDESVPYFYNGYYYITRYEKGSEYPIY
                     SRKKDSLSAAEEIMFDVNEMAKDYAYYQLRGLNVSPDNKWVAFGVDTLSRRQYMLHIK
                     NLETGEIRSESIQNTTGGSTWGNDNKTLFYTKKDPVTLRSDKIYRHVMGTSEAEDVMI
                     YHEEDETFNTYVYKTKSDQFLVIGSISTMTSEYRICNADQPLGSFNVFQQRVRGLEYD
                     IDHYQDHFYIVTNKDEATNFKLMKTPVDKTAQEYWEEVIPHRADVLLEDVDLFKDYLV
                     VSERVEGLTQLRIMPWDGRPAFNLPFDNKTYTAGTTQNIEFNTSKLRYGYSSLTTPSS
                     VIEYDMNTREQVVLKETEVLGGTFNKDNYVSERLWAPAQDGTMIPVSIVYKKGFKKDG
                     SRPLLQYGYGSYGATMDPYFSSTRLSLLDRGFAFAIAHIRGGQYMGRPWYEEGKLLKK
                     KNSFTDFIDVSQFLIDQGYTSAEHLYAMGGSAGGLLMGAVINMAPELYHGVIAAVPFV
                     DVVTTMLDESIPLTTGEFDEWGNPKEAEYYHYMKSYSPYDNVAPLNYPNLLVTTGLHD
                     SQVQYWEPAKWVAKMRTLKTGSSLLVMHTNMDAGHGGASGRFEGLKELAMEYAFLFDL
                     EGIQK"
     assembly_gap    4861..4940
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(5128..6159)
                     /locus_tag="DHV98_08090"
     CDS             complement(5128..6159)
                     /locus_tag="DHV98_08090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine aldolase"
                     /protein_id="HCK06298.1"
                     /translation="MDPIDLRSDTVTKPSEGMIEAMFSAKVGDDVYHEDPSVNALQDY
                     VAEFFGAEQALYFPTGSMANQAAIKLHTQPGEQLIAHEWSHVYNYEGGGVSFNSGVSC
                     KLLSGARGLLTADQIAPAINPPDFYHSPLTTLVCVENTTNKGGGACYALEDLKTIGAE
                     CKIHGLNYHLDGARLWNALVAEDQDPKQYGPLFDTISVCLSKGLGAPMGTVLVGKSEV
                     IQRAMRVRKVLGGGMRQVGYMAAAGLYGIQHQLTRLSQDHKKAHELAQCLETLDYVKS
                     VEPTQTNIVIFYLNPEVNQQRFLNFLEQNKVRISAMGQGKWRMVTHLDYTEPQHQRML
                     SVLGQFKGL"
     gene            complement(6170..6787)
                     /locus_tag="DHV98_08095"
     CDS             complement(6170..6787)
                     /locus_tag="DHV98_08095"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06299.1"
                     /translation="MNCIRLFKHWGGMLWLALFFVYALEAQNTVVPEIIQDLDASVEL
                     AVFRKIVPEDREELYYLEEGQFYQTKRKVGAPWGKINRSDSVLGFYVMDHWPALRDDL
                     VKPFRQKPISSNAAAGNQNQNAVDNKAISGQNLTEIGVKAVISKDYSFQYVLLYRNIW
                     VERAFNQKDIDPRWAKENETYTFNQTLKLTKMHQIMDALFLIKPR"
     gene            complement(6833..7651)
                     /locus_tag="DHV98_08100"
     CDS             complement(6833..7651)
                     /locus_tag="DHV98_08100"
                     /inference="COORDINATES: protein motif:HMM:PF16313.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06300.1"
                     /translation="MSVRTVAINQFSLNQIPKGQPHSVLEDVFVPIYYLHRYQTEAAV
                     KMLGGQHYDYSIKGARSSINQTVSPEEQRHALRTVLNTIAPLQLHIPERVEALFPPRA
                     FGYPRSRESFKSSMGVSFDPLTAAGSAASMTLEFLFHPARLNRIYWQQVRYPNQLSLD
                     ELLEKSAEMFNSEQSSARLTALNEYVLNLYLRQVMAASVAKQALPQVKAKLKDHLYHW
                     ERWAKKYHKELAAHYLDMLNQYWQNPEDFDLMDRPDLPDGSPIGSDLCIFPELD"
     assembly_gap    7659..7715
                     /estimated_length=57
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7716..>8283)
                     /locus_tag="DHV98_08105"
     CDS             complement(<7716..>8283)
                     /locus_tag="DHV98_08105"
                     /inference="COORDINATES: protein motif:HMM:PF16313.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCK06301.1"
                     /translation="ASITDPRTGEIIKGHVSLGSLRVRQDFLIAQGLSLDPFAQDQID
                     PAMQELALARLRQLSAHEVGHTLGFAHNFAASAYGKVSVMDYPHPQLSLKDGTIDYSK
                     AYEAGIGLWDKISVAYSYGDFPQGTQKTDYLSALLDKAFSQDLLFITDSDARAASGSH
                     AQAHLWDNASNAAQGLEEIMSVRTVAINQ"
     assembly_gap    8284..8384
                     /estimated_length=101
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8385..>8859)
                     /locus_tag="DHV98_08110"
     CDS             complement(<8385..>8859)
                     /locus_tag="DHV98_08110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCK06302.1"
                     /translation="EALLTFEGQPTGRALKSVWEGTDLSTIQHHSFVALPDDQYEMRA
                     FDPRCGAFPMTFYDYATPLDQPLKQQFITRHRLQKKFPDQAMSPAVEPIIYYLDPGTP
                     EPVRSALLEGANWWNQAFAALGYEDAFQVALLPEGADPLDARYNVIQWVHRSTRGW"
     assembly_gap    8860..9009
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9010..9555)
                     /locus_tag="DHV98_08115"
     CDS             complement(<9010..9555)
                     /locus_tag="DHV98_08115"
                     /inference="COORDINATES: protein motif:HMM:PF17148.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HCK06303.1"
                     /translation="MDDFMRLLRYLPLFLLSLAAQAQFLKSEVNKTKFEGLFDFYYVP
                     DKGKVFLAINEDQLGQDFLYVHALRTGLGSNDIGLDRGQLGGAQIVRFEKAGPRILLM
                     APNMLFRAQSSNPLERQSVREAFGTHVLFGFEITETDQNKFLVDMTDFLLQDTHQVAQ
                     TLSQKKQGNFKLDKSKSVIWME"
     gene            9644..10751
                     /locus_tag="DHV98_08120"
     CDS             join(9644..9706,9708..10751)
                     /locus_tag="DHV98_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780228.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HCK06304.1"
                     /translation="MTTADHLKDLRHRLDALRRYLDVDGKKITIANDEEKTFDPNFWN
                     DAKGAEAFMKELRTLKKWVEDYQTAEQDFEELEVYFEFFKEGEETQEQVDSAYQKASN
                     AIEQLEFRNMLSSEGDDLSAVLQITAGAGGTESCDWANMLMRMYLMWAEKHGYKIKEL
                     NFQAGDVAGVKTVTLEIEGDHAFGWLKGENGVHRLVRISPFDSNAKRHTSFVSVYVYP
                     MVDDRIEIEINPADISWDFARSSGAGGQNVNKVETKAILTHHPSGIVIHNSETRSQLE
                     NREKAMQMLKSQLYEIELRKQQAQRDEIEANKMAIEWGSQIRNYVLHPYKLVKDVRTH
                     YESGNTDAILDGHIDEFLKAFLMMTGQKEASNEL"
     gene            10787..11659
                     /locus_tag="DHV98_08125"
     CDS             10787..11659
                     /locus_tag="DHV98_08125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06305.1"
                     /translation="MKNTMRILSLMILSLFFVQCSSDDNSNNNNNNDPNDPNPTNLPK
                     LVAFEVGPNGTNVQYEYNDNDLLEVWTETTQPGVGFEITTAYNDELNPNVWYYVDSDG
                     VSDQKGFFYDFQGRVFRYLDAQDDVTLIYDNDTVLFEGIIDEVADVSGSMTLNAAGKV
                     TRFNGPNQYLTFDYDPSGNMIALNQYDNNDNLINNYSFTYDNKNNPFYGQFDTLYLVR
                     SIDLFWDFSTINFTGFSGYVYPYNPNNMTAILRDGITMVNYLIGYDNDDYPAVISEAV
                     SGNSYQWDIIYITE"
     gene            11675..12334
                     /locus_tag="DHV98_08130"
     CDS             11675..12334
                     /locus_tag="DHV98_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017910823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HCK06306.1"
                     /translation="MNTLIFDLGGVLIDWQPAYVFLKEFRGDSAKMNEFLNTICAWDW
                     NLNQDAGYPLEKATNERIALYPEYERLIKMYYGRWEEMLGLAHKDTLALLEYLKFQSN
                     YRLLALTNWSHETFPIALKKFPWLEWFEGIVVSGEEGLCKPDPEIYSRLMDRYSVKAQ
                     ESIFIDDNRENIQAAQGLGFSALHFKGAPTLAQELIDLGIPLPPNLINQINDPLLSLD
                     L"
     gene            12331..>12601
                     /locus_tag="DHV98_08135"
     CDS             12331..>12601
                     /locus_tag="DHV98_08135"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase"
                     /protein_id="HCK06307.1"
                     /translation="MIKIYHNPRCRKSREALKYLEDKGATFEVILYPQNPLTGQELSD
                     LIKKLRMPPIDLIRKEEALWKTQFKDKNLGDKTLIHLMIEEPRLMQ"
     assembly_gap    12602..12747
                     /estimated_length=146
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            12901..>13990
                     /locus_tag="DHV98_08140"
     CDS             12901..>13990
                     /locus_tag="DHV98_08140"
                     /inference="COORDINATES: protein motif:HMM:PF13715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06308.1"
                     /translation="MKSYLNLPLLLITLWTLSSLGYGQNSGPMVVKGQVLDQLDQSPL
                     SYASVGIFDANQTLRSGGITDDNGFFEIELSQGKFTLQIDYISYKTLKKNIEVQASLD
                     LGILFMEQNQEALDEVVVRAENTEVQIRLDKKIYTIGKDLTTSGATVSDALNNVPSVT
                     VDVDGSIALRGNENVRILINGKPSAIAGFGQTDALRQLPAEAIERVEVITAPSARYDA
                     EGTAGILNIILRKEKTRGLNGSIQANLNEPFGYGSTLALNWRTDRFNLFSTIGYRHRE
                     SPGNASYNNRYFDPDFAAARYTERRNFDHLRKGFNTNFGLEYFLTESSSITGSIFLRT
                     GDDKDKTENQAKEWTSGDTLLSHIQRLQN"
BASE COUNT         3828 a         2958 c         2729 g         3728 t
ORIGIN      
        1 ggaaagactt taatcctgtg caacacaaag aacgaagtac ttataaaaaa gagctctaaa
       61 gtaagcaggc aataaggcct tattattcct gcgctacggc ttgctgcatt aaggcttccg
      121 aaagtcgttt atacgttcca ttttctaatc gagaacgaat acttgaaaac gcatcgagcg
      181 tctcggcaac atcctcgagc gtgtgcgatg cagtaggaat caagcgcaaa agaatcaatc
      241 cttttggaat cacgggatag actactatcg aacagaaaat tccatggctt tctcgaaggt
      301 ctttaaccaa agccatggcc tctggaatac tgcctttgag gtatactggg gtgacacaac
      361 tttgagtcgt tccgatgtca aaaccacgtt cttttagccc attttgaagn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnaagttgca tttggagcga cttagcgaac atttgtgacc
      661 gtaaattgta tttcagataa ttgataattt cttgatctgc agcaataaat gctccagtac
      721 tggccattga tttggcgaat gtagcaaaat agacatcgat ttgatcctga acgccttgct
      781 cttctccagc accagccccc gttttaccta aggttccaaa accgtgcgcg tcatctacta
      841 aaaatctgaa attatacttt ttcttgagcg caacgatttc tttaagccta ccctgctctc
      901 cacgcatccc aaaaacacct tcagaaatca acagtatccc tcctccagtt ttttcagcaa
      961 cgcgctcggc acgcattagg tttttttcaa tactctctaa atcgttgtgc ttataggtaa
     1021 aacgttgtcc catgtgcaga cgaacaccgt caataataca ggcgtgtgca tccacatcgt
     1081 atacaatgac gtcatccttg gataccaaag catcgatggt tgataagatc ccttgatagc
     1141 caaaattgag caaataagcc gcttctttat tgacaaaagc cgccaattcg cgctgaagtt
     1201 gctcatgtaa atcagtatgg ccactcatca tacgcgcacc catgggatac gctgagccat
     1261 actttgcagc agcttccgca tcagccttcc ggacttcggg acggttagct aggcccagat
     1321 aatcattcac gctccacgta acgacctctt taccctgaaa tcgcattcta tttgaaatct
     1381 cgccctccaa ctttggaaat acaaaataac cttctgcttg ttcggcccat ttccctaatg
     1441 gtcccttgtc cttgtatatt ttgtcgaata aatctctcat cagaccgcct tttttatatc
     1501 gtatacacga gacaaaagta cataaattag cttctaaaat ggtgtttatg tcctaaagaa
     1561 ataaacaatt tgaaggtctg agaaggcttt gatctaaata aattttaggg tattggcgtt
     1621 tgcaagaata aaaaggggtt ggcaagcaca aaaagaagga cccagaagtt taccgtcctg
     1681 gattataagg tctgagtaga ctcagaagtt tttgattttt gaggacttga ctcctgcata
     1741 aacccttgat caatcatcca ctgatcattg taaaccttac tcatataacg agatccgtgg
     1801 tctggaaaga tgaccacaac aacactattt tgatcaaaac tccgctcctc atttaactga
     1861 aataaccctt gaagggcagc cccactggta taccccataa agagaccttc tttttgagct
     1921 agagttcggg cagcccaagc gctgtcctga tccgtaactt ttataaaacg atcaataacc
     1981 gaaaaatcag ttgccgtagg aatgaggttt ttgccgaggc cttctattcg atacgggtaa
     2041 atctcatctt tatcaagttc accagtttca tgatatttct ggagtactga accataagca
     2101 tcaatcccta taatttcaat ttcgggattt tgttccttca aatactgagc ggtccctgaa
     2161 atcgttcctc cagtaccact gcaggccact aaatgggtta ttttcccatt ggtttgttgc
     2221 caaatttctg gtcccgttga atgataatgg gccgccgtat ttaaggcatt aaagtactgg
     2281 ttaatataaa tagaccctgg ggttttttca tgaagccttt gggctacttt ataataagaa
     2341 cggggatcat ctgcgggaac gtttgcagga catacgtgaa cctctgcacc catcgaccgc
     2401 aacatatcaa ttttatctgg agaggatttt gaggagacgg ccaaaataca tttatagcct
     2461 ttcaaaacac tgaccatagc aaggctaaac cccgtattac cactggtggt ctcgacaatt
     2521 gttgccccgg gagttaacaa gccactgcgc tcggcctctt caataataaa agcggcgatt
     2581 ctatcttttg ctgaatgacc tgggttaaat gattccatct tagcccaaaa gtttcctgga
     2641 aaatcagaaa ccaccttggt taatcgaacc agcggtgtct tcccgattaa atcgagtaca
     2701 ctatcatgaa cattcaaatc gtgcataaag acattattta agtttcagag cttcgcccga
     2761 attacgctgc aaatttagtt aaaaaaaatt gactacttct gaatgccctc caagtcaaac
     2821 aaaaaggcat attccattgc taattcctta agtccctcaa accgaccaga agccccgcca
     2881 tggcctgcat ccatgtttgt atgcattaca agcagtgaag aacctgtttt cagtgttctc
     2941 attttagcga cccatttggc cggctcccaa tactggactt gagaatcatg aagcccggtc
     3001 gtgaccaaga gattcggata gtttaagggg gctacattat catacggaga ataggatttc
     3061 atgtaatgat aatattctgc ctccttagga ttaccccatt catcaaactc acccgtagtt
     3121 aatggaattg attcgtccaa cattgtggtg accacatcga caaaaggaac cgccgcaatt
     3181 accccgtggt acaactccgg ggccatattg atcactgcgc ccatgagtaa accgccagca
     3241 gatcccccca tggcatacag gtgttcagca ctggtatatc cctggtcgat taagaattga
     3301 gaaacatcga taaaatctgt aaaactattt ttctttttta gcagttttcc ctcttcatac
     3361 caaggccgcc ccatatactg tcccccgcgg atgtgcgcaa tggcaaaggc aaagcctcga
     3421 tccaaaagtg agagccttgt tgaagaaaag taaggatcca tggtcgcacc ataggaacca
     3481 tatccatatt gcaataatgg acgcgaacca tcctttttaa agcctttttt ataaacaatc
     3541 gagaccggaa tcatcgttcc atcttgagct ggagcccaca atcgctcaga gacgtaattg
     3601 tctttattaa atgtaccgcc cagtacttct gtttctttta gaacgacctg ctcccgagta
     3661 ttcatatcgt attcaatcac agaagacggc gtggttaagc tactataacc ataacgcaat
     3721 tttgaggtgt tgaactcaat gttttgagtg gttcctgctg tataggtttt attatcaaag
     3781 ggcaaattaa aggccgggcg tccatcccac ggcataatac gcaattgggt taatccctca
     3841 acccgctctg aaaccaccaa gtaatcctta aacaaatcaa catcttctaa aagcacatct
     3901 gcacggtgtg ggattacttc ttcccaatac tcctgagctg ttttatccac aggagtcttc
     3961 atcaatttga aattggttgc ctcatctttg ttcgtgacga tgtaaaaatg gtcttgatag
     4021 tggtcaatgt catattccag gccccgaaca cgctgctgaa aaacattaaa actgcccaaa
     4081 ggctgatcgg cattacagat cctatattct gaggtcatcg tgcttatact tccgatcacc
     4141 agaaactgat cagacttagt tttatacaca taagtattga aggtttcatc ttcttcgtga
     4201 taaatcatga catcttcggc ctcagaggtc cccataacat gtctgtaaat tttgtcagaa
     4261 cgcaaggtta ccggatcttt tttggtataa aacaaggttt tattgtcatt accccaggta
     4321 gagcctccag tcgtgttttg aatgctttct gagcgaattt ctccagtctc tagatttttg
     4381 atatgcaaca tgtattgacg tcgactcaag gtgtcgaccc caaaggccac ccatttatta
     4441 tcggggctga cattaagtcc tctgagttga taatacgcat aatctttggc catttcattg
     4501 acgtcaaaca tgatttcttc ggcggcacta agactgtctt ttttacggga atatatggga
     4561 tactcacttc ccttttcata acgtgtgata tagtaatatc cattgtaaaa ataaggaaca
     4621 gactcatcgt cttccttaat ccgcgccttc atctcttgga acaaatcggc ctggaaatct
     4681 ttggtatgcg ctgtcatttt accgtgataa tcgttttcac gctctagata gtccaagacc
     4741 tcctcatcct cgcgatcatt gagccagtaa taaggatcca agcgcacatc gccgtgcatt
     4801 tctatatact tttctttggc gtcagccaaa ggtggggtca tattttttgg tgccattttt
     4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4921 nnnnnnnnnn nnnnnnnnnn gtgatatttt ttggtgccat tttttgtgta ttgtttgaac
     4981 atgagacgac caaaaggccg actacacttg ccagaaagta agcgagattt ttcatgatgt
     5041 tctgcgtatt aaaaatcggt taatgttgtg caaataaaaa tagtgatttc ttgcgtaaac
     5101 tcaggagtct ttctggcgta attgacttta tagtccctta aattgtccca gtaccgaaag
     5161 cattctttga tgttgtggct ctgtgtagtc cagatgagtg accatccgcc actttccttg
     5221 acccatagcg ctaattcgca ctttgttctg ctcaagaaaa ttcaaaaacc gctgttgatt
     5281 tacttcagga ttcaagtaaa agataacgat gttggtttgg gtcggctcaa cacttttaac
     5341 ataatctaaa gtctccaggc attgggccaa ttcatgggct tttttatgat cttgggaaag
     5401 gcgggtcaat tgatgttgta tcccgtaaag tccagcagca gccatataac ccacttgacg
     5461 catcccgcca ccaagtactt ttcgcacccg catggcgcgt tgaatgactt ctgattttcc
     5521 aaccaaaact gtgcccatag gcgccccgag acccttactc aaacaaactg aaattgtatc
     5581 aaataatggc ccgtattgct ttggatcctg atcttcagcc acgagagcat tccataaccg
     5641 agcgccatcc aaatgatagt tcaagccatg gatcttacat tcggcgccaa tagttttgag
     5701 atcctccagc gcataacatg cgccaccgcc tttgtttgtg gtattctcga cacataccaa
     5761 tgtcgttaaa ggactgtggt aaaaatctgg agggtttatc gctggtgcga tttgatctgc
     5821 ggtcagcaaa cctcgagcgc cactgaggag tttgcaggat acgccgctat taaaagagac
     5881 accgcccccc tcataattgt agacatggga ccattcatga gcgattaatt gctctcccgg
     5941 ttgggtgtgc aatttgatcg ccgcttgatt ggccatactt cccgtgggaa aatagagcgc
     6001 ttgttccgca ccaaaaaatt ccgccacata atcttgtagc gcattaactg aggggtcctc
     6061 gtgatataca tcatcgccaa cttttgcaga aaacattgcc tcaatcatcc cctcagaggg
     6121 cttagtcacg gtatcactgc gtaaatctat agggtccata ttttgccaat tatcttggtt
     6181 taattaaaaa taaagcatcc ataatttgat gcatttttgt cagtttcaag gtttgattaa
     6241 acgtgtaggt ttcattctct ttggcccaac gaggatcgat atctttctga ttaaatgctc
     6301 gctcaaccca tatattgcgg tataaaagca catattgaaa agaataatct ttagaaatta
     6361 ccgctttgac ccctatttca gtcagatttt ggccagagat tgccttatta tcgacagcgt
     6421 tttggttttg atttccggca gccgcattac tgcttatcgg tttttgtcta aatggtttaa
     6481 ccaaatcatc gcgaagcgca ggccaatggt ccatgacata aaaaccaagg accgaatccg
     6541 atcgattaat cttgccccaa ggcgcaccca ccttgcgttt tgtttgataa aattgaccct
     6601 cctccagata atataactct tcacgatcct ctggcacaat ctttctaaaa accgcaagtt
     6661 ctaccgaagc atcaagatct tgaatgatct cgggaactac agtattttgc gcctcaaggg
     6721 catacacaaa gaataaagca agccataaca taccccccca atgtttaaac aatcgaatac
     6781 aattcataat aaaaggtctg agttaacgcg cataatttgg cttataagca gatcaatcta
     6841 actccggaaa tatacataaa tcggatccaa ttgggctgcc atcgggcagg tctggcctat
     6901 ccataagatc gaaatcttca ggattttgcc aatattgatt gagcatatcc aggtaatgtg
     6961 ccgccaattc cttgtggtat tttttagccc aacgttccca atgatacaag tgatctttta
     7021 gtttagcctt aacctgtggc aaggcttgtt ttgccacact tgccgccatg acttgtctca
     7081 aatagaggtt cagaacatat tcattaagcg cagtcagtcg ggcactcgat tgttcgctgt
     7141 tgaacatttc tgccgatttt tcaaggagct catccaaact caattgattt ggataacgca
     7201 cctgctgcca ataaattcga tttaaacggg ctggatgaaa taaaaactca agcgtcattg
     7261 aggcggcgct gcccgctgcg gtcaagggat caaaactcac gcccattgag gacttaaatg
     7321 attctcgaga acgcggataa ccaaaggctc taggaggaaa caaggcctca actcgctctg
     7381 gaatatggag ttgtaagggc gctatggtat ttaaaactgt ccttaatgca tggcgctgct
     7441 cctcaggaga aacagtctga tttatagaag atctagcccc ctttatgctg taatcatagt
     7501 gctgaccgcc aagcattttc actgcggcct cagtttgata tcgatggagg taataaatgg
     7561 gcacaaaaac atcttctaga acagaatgtg gctgcccttt gggaatttgg ttgagcgaaa
     7621 attgattgat tgcaacagtg cgcacggaca taatttctnn nnnnnnnnnn nnnnnnnnnn
     7681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnttgat taattgcaac agtacgcacg
     7741 gacataattt cttcaaggcc ttgagccgca ttgcttgcat tgtcccataa atgagcttgc
     7801 gcatgactgc cacttgccgc tcgtgcatca gaatcagtga taaataagag atcctgagaa
     7861 aatgccttat ctaataaggc gcttagataa tctgttttct gggtcccctg agggaagtca
     7921 ccataactgt aagccactga aattttatcc cataatccta tccctgcttc gtaagccttg
     7981 ctgtaatcga ttgtaccatc cttcaaactg agttgcggat gtggatagtc catgacactg
     8041 accttaccgt aggcactggc tgcaaaatta tgggcaaatc ctaaagtatg accaacttca
     8101 tgagcggata actgtctgag tcgggccaaa gccaattctt gcatggctgg atctatttga
     8161 tcttgagcaa atgggtctaa agagagccct tgagcaatta aaaagtcttg acgcacacgc
     8221 aaactgccca gactgacatg gcctttgatg atctctccag tgcggggatc agttattgat
     8281 gccnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnccaccc gcgggtggaa
     8401 cgatgcaccc actgaatcac attataacgc gcatccaatg ggtccgcgcc ctctggcaag
     8461 agcgccactt gaaaagcatc ctcatagccc agggctgcaa aagcttgatt ccaccaattt
     8521 gccccttcta aaagtgcgga acgaacgggt tcaggggtcc cgggatccaa atagtaaata
     8581 attggttcta cggccggact catggcttgg tctggaaact ttttctgaag tcggtgacgg
     8641 gtaataaact gctgtttgag cggctgatca agaggcgtgg cataatcgta aaatgtcatg
     8701 ggaaaagcgc cgcagcgggg atcaaaagca cgcatttcat attgatcatc gggcaaagcc
     8761 acaaaactat gatgctgaat agtagacaag tcggtgcctt cccaaacgct tttcaatgct
     8821 cgccctgtgg gttgaccctc aaaagtcagc aaagcttcan nnnnnnnnnn nnnnnnnnnn
     8881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9001 nnnnnnnnnc tccatccaaa taacggattt acttttatcg agtttgaaat ttccctgctt
     9061 tttctgtgac agggtttgcg cgacctgatg ggtgtcttga agtaaaaaat ccgtcatgtc
     9121 gaccaaaaat ttattttgat ccgtctctgt aatctcaaaa ccaaacagta catgggtccc
     9181 aaaggcctcg cgaaccgact gccgctctag tggattgctg gactgcgcac gaaagagcat
     9241 gttgggcgcc ataagcaaaa tacgggggcc cgccttttca aatcgaacaa tttgcgctcc
     9301 accgagttga ccgcgatcca aaccgatatc attgctcccc agtcccgtgc gtaaagcgtg
     9361 aacgtaaaga aaatcctgcc caagttgatc ctcgttaatg gccaaaaata ccttgccctt
     9421 atccgggaca taatagaaat caaaaaggcc ctcaaatttg gttttattta cttcgctttt
     9481 taaaaactgt gcctgtgcgg caaggctcaa aagaaatagg ggtaaatagc gtaaaagtct
     9541 cataaagtca tccataacag taatgcttta aaactattaa atatttgttg aaactctttc
     9601 ttcttggccg cttaaaagct atttttgcag aaattaactc agtatgacta cagcagatca
     9661 cttaaaggat cttagacatc gcctggatgc gttaaggagg tatctttgac gtagatggta
     9721 aaaaaattac catcgcgaac gatgaagaaa aaacatttga cccaaacttt tggaacgacg
     9781 ccaaaggggc tgaggccttt atgaaagaac tccgcacctt gaagaagtgg gttgaggact
     9841 atcaaaccgc cgaacaggac tttgaggaat tagaagttta ttttgaattc tttaaagaag
     9901 gtgaagaaac tcaagagcaa gttgattcag cctaccaaaa agcctcaaat gccatagaac
     9961 agcttgaatt ccgcaacatg ttgagcagtg aaggggacga tctcagcgcc gttttacaaa
    10021 tcactgcagg agccggagga actgagagtt gtgattgggc caatatgttg atgcggatgt
    10081 atttgatgtg ggcggaaaaa cacgggtata aaattaaaga gctgaacttc caagccgggg
    10141 atgttgcggg agtaaaaaca gttacccttg aaattgaagg ggatcatgcc tttggctggc
    10201 ttaaggggga aaatggcgtt catcggttgg tccgtatttc accttttgat tctaatgcga
    10261 agcgccatac tagtttcgtg agtgtctatg tttaccccat ggtggatgat cgcattgaaa
    10321 tcgaaatcaa tcctgccgat atttcctggg attttgcccg cagtagcggc gcgggagggc
    10381 aaaacgtaaa taaagtggaa accaaagcta ttttgaccca ccaccccagt ggtattgtaa
    10441 ttcataacag cgaaacgcgt tcccaacttg aaaaccgtga aaaagcaatg cagatgctta
    10501 aatcgcaact ctatgaaatt gagttgcgca aacaacaggc acagcgcgat gaaatcgaag
    10561 ccaataaaat ggctatagaa tggggcagcc aaatccgtaa ttatgtgctc catccttata
    10621 aattagttaa ggatgtccga acgcattatg aatcgggaaa taccgacgct attttagacg
    10681 gtcatataga cgaatttctc aaagcatttt taatgatgac cggccaaaag gaggccagca
    10741 atgaacttta attataatgg aaacatttaa ctttacccct aaatcaatga agaacaccat
    10801 gcgtattttg agtctaatga tcttgagttt attttttgta caatgctcaa gtgatgataa
    10861 ttccaataat aacaataaca acgacccaaa cgacccaaac ccaactaacc tgccgaagct
    10921 cgttgctttt gaagtagggc caaacggcac aaatgttcaa tatgaataca acgacaatga
    10981 cctgttagag gtatggactg aaaccaccca gcccggtgtc ggctttgaga tcaccacggc
    11041 ttataatgac gagctcaacc ctaatgtttg gtattatgtt gacagtgacg gggtttctga
    11101 tcaaaaaggc tttttttacg acttccaagg gcgcgtattt agatatctag atgcgcaaga
    11161 tgatgtgact ctaatctatg ataatgatac tgttttattt gagggtatta ttgatgaggt
    11221 agccgatgta agcggttcaa tgaccttaaa cgcggccgga aaagtcacaa gatttaatgg
    11281 cccaaatcag tatttgacct tcgactatga ccccagcggt aacatgatcg cactgaatca
    11341 atacgacaat aacgacaact taataaacaa ctacagtttt acttacgaca acaaaaacaa
    11401 tccgttttac ggtcagtttg ataccttata tctggtgcgc agtattgatt tattttggga
    11461 tttcagcacc ataaacttta caggttttag tggctatgtc tatccctaca atcctaataa
    11521 tatgaccgca atattacgtg atggcataac catggtgaat tatcttatcg gttacgacaa
    11581 tgatgattat cctgcggtga tcagtgaggc agtctcagga aattcttatc agtgggatat
    11641 catttatatc acagagtaag tcatgaacgc aaagatcaat accctaatat ttgatctggg
    11701 cggtgtctta attgactggc aacctgccta tgtctttctc aaggaattta gaggtgattc
    11761 tgccaagatg aatgaattcc tcaatacgat ttgtgcatgg gattggaatt taaatcaaga
    11821 cgctggctat cctcttgaaa aagcgacaaa tgagcgtatt gccctctatc cagaatatga
    11881 gcggctcatt aaaatgtact atggtcgttg ggaagaaatg ctcggcttgg cccataagga
    11941 cactttagcc ttacttgaat atctaaagtt tcaaagtaat tatcgcttac tggccttgac
    12001 caactggagc cacgaaacct tcccgattgc tttaaaaaag ttcccctggc ttgagtggtt
    12061 tgaggggatt gtagtcagtg gcgaagaagg cctgtgcaaa cccgatcctg aaatttattc
    12121 acgcttaatg gatcgttatt ctgtaaaggc tcaagaatct atatttatcg atgacaatag
    12181 ggaaaatatt caggcggctc aagggctagg attttctgca ttgcacttca aaggcgcgcc
    12241 aactttggct caagagttaa ttgacctggg tatcccttta ccaccgaacc tgatcaacca
    12301 aattaatgac ccacttttgt ctttagattt atgatcaaaa tttaccataa tccaagatgt
    12361 cgtaaatcta gagaagccct taaatattta gaagataagg gcgctacttt tgaggttatt
    12421 ctctacccac aaaacccatt gactgggcaa gagttaagtg atttgattaa gaagctccgc
    12481 atgcccccta ttgatttaat taggaaagaa gaggcgttgt ggaagacaca attcaaggat
    12541 aaaaacctcg gtgacaaaac attgatccat cttatgattg aagaaccgcg actcatgcaa
    12601 cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12721 nnnnnnnnnn nnnnnnnnnn nnnnnnnaac cgcgactcat gcaacggcct atcgtcgaat
    12781 ttcaggataa ggcagttata gtgcgacccc ttgccgttct tgaaaatctc atttaatatt
    12841 aacagaattt tatgagcctg taccctcaaa tgggtctatc attgggctca aaatttgctt
    12901 atgaaaagtt atctcaactt gcccttgtta ctgattactc tgtggacttt atcttcttta
    12961 ggatacggtc aaaactcagg gccaatggtg gtcaaaggtc aagttttaga tcaactcgat
    13021 caaagccccc tatcctatgc cagtgtcggt attttcgatg ccaatcagac ccttcgatca
    13081 ggggggatta ctgatgacaa tggttttttt gaaattgagc tttcacaggg aaagtttacc
    13141 ttacaaattg attatatctc ctacaaaaca cttaaaaaaa atattgaggt gcaggcttct
    13201 ttagatctag ggattttgtt tatggagcaa aatcaagaag cccttgatga agttgtggtg
    13261 cgtgcagaaa acactgaagt acaaatacgt ttggacaaaa agatctatac tataggtaaa
    13321 gatttaacca ccagtggagc tacggttagt gatgccttaa acaatgtccc ttcggtcact
    13381 gtcgatgtcg acggaagtat cgccctaaga ggaaacgaaa acgtgcgcat actgatcaat
    13441 ggtaagcctt cggctatcgc aggttttggt caaactgatg ctttgcgtca attgcctgca
    13501 gaggccattg aacgtgtcga agtgattact gcgccctctg cgcgctatga tgcggaagga
    13561 accgcaggaa tattgaatat tattcttcgc aaagaaaaga cccgtggact caacggctct
    13621 attcaggcta acctaaatga gccttttggt tacggatcaa ccctcgcgct gaactggcgt
    13681 acggatcgtt ttaatctctt ttcaacaatt ggttatcgcc atcgtgaaag tcccggtaat
    13741 gcgtcctata acaatcgata ttttgatcct gatttcgcgg ctgcccgata tactgagcgg
    13801 agaaattttg atcatttacg aaagggcttt aatacaaatt ttggtttaga atacttttta
    13861 acagagtctt cctccatcac gggttcaatc tttttgcgca ccggtgatga caaggacaag
    13921 accgaaaatc aagccaagga atggacctcg ggtgatactt tgttaagcca tattcagcgc
    13981 ctacagaatc
//
LOCUS       DPUP01000213            3258 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7604,
            whole genome shotgun sequence.
ACCESSION   DPUP01000213 DPUP01000000
VERSION     DPUP01000213.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3258)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3258)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3258
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..660)
                     /locus_tag="DHV98_08145"
     CDS             complement(<1..660)
                     /locus_tag="DHV98_08145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4294 domain-containing protein"
                     /protein_id="HCK06309.1"
                     /translation="MFTRTHETQAQVQIEFPARIPQRSSDTLEQEPFYYVLQGDSLVR
                     EHIDLNEVVLLKNRSFKDMSERRKYIILRRRTLKVYPYAKLAAERLAVMEQRLAQIKR
                     KSKRKKYIKQAQKYMEGEFYETLRKFTRAEGRILVKLIHRQTGQSTFDLIKDYRSGWR
                     AFWYNQTAHWFDIELKSTYDPFENKEDYFIEDILQRGFRDGLIEQQKPQEPIDILALE
                     AH"
     gene            858..1913
                     /locus_tag="DHV98_08150"
                     /pseudo
     CDS             858..1913
                     /locus_tag="DHV98_08150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783554.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M42"
     assembly_gap    1505..1555
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1931..>3258
                     /locus_tag="DHV98_08155"
     CDS             1931..>3258
                     /locus_tag="DHV98_08155"
                     /inference="COORDINATES: protein motif:HMM:PF09411.8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06310.1"
                     /translation="MIWLKWVNLLSLPIDPKSYCLSFKTALMIRLSLVFIYIVLCIGN
                     VTVTHAQVKQNFKFSTEILYGISAEANDFFPERDPQFSFVLGIGKTLELPGKLPAKNP
                     NIGLLGMYTDLGNTELLGHSYALIPYVSFPIFGKHWKGSRLKFGLGGAYFDTRFDPEA
                     NFFNQAVTTDITWAFRGSVHQKLWQNAYGLMDLGLVYNHQSNGHTKLPNQGLNSFLIS
                     LRQTWNSKFIYRASHDDNDYSDESGVWLKSERATPYSAANSVDQLAQKNIKEDLNESK
                     QHQTEEYLEARFGYGQNVLAPAFNDLRPVRTVSITWGKTHKGYLRWGVGAFYRFYQHY
                     HDYIKGNESLVRPGQEFAEFKDNPWRYGSNFGVHLNGEVLLGHFGVSTQLGFNFYKPA
                     YAIDWRINEGWDYPPRELPPNWVLGEYNTKYQLKKYISSRLGIRYYLWDTR"
BASE COUNT          900 a          670 c          706 g          931 t
ORIGIN      
        1 atgcgcctct agcgccaata tatcaatagg ctcttgaggt ttttgctgct cgatcaagcc
       61 atcgcgaaat ccacgctgta ggatgtcctc aataaagtaa tcttctttgt tttcgaaggg
      121 gtcgtaggtg cttttaagtt cgatatcaaa ccaatgtgcc gtttgattat accaaaacgc
      181 gcgccagccc gacctgtagt ccttgatcaa atcaaaagta ctctgtcctg tttgtcggtg
      241 aataagtttt accaaaatac gcccttctgc ccgggtaaat ttccggaggg tttcataaaa
      301 ttcaccttcc atgtattttt gggcctgttt gatatatttt ttacgcttgc tttttctttt
      361 gatctgcgcc aatcgttgtt ccatgaccgc taagcgttcg gccgctagtt tggcataagg
      421 ataaactttg agcgtccgac gacgcagaat aatatatttg cgccgctcag acatgtcttt
      481 aaaagagcgg tttttgagca agactacttc gtttaggtca atatgctctc ggaccaagga
      541 atcgccttgc aagacataat aaaaaggctc ctgttcaagg gtatcgctgc tgcgctgtgg
      601 gatgcgcgcc ggaaattcta tttgtacttg cgcctgagtc tcatgagttc tggtaaacat
      661 taggccaaaa agaagcataa agccgagtgg cacaccttgg aataacccta tgtgtctgta
      721 aaacctccct tttaagttcg gtacagtgaa cagcataaaa ttgatacttt gagtccttaa
      781 cactgatcaa aaataagcat ttaaagcccg tttgcttgtg aagaatttgc taattttaag
      841 gctcaaaaaa taaaactatg gcggcatcat tgctcacaaa agaatcatta aaatttttag
      901 aaatttatct aaataatgcc tcgcctactg gttacgagtg gagtggtcaa aaactttgga
      961 tgaattattt gcgtccttat gtggatgagt tcattactga tgcttacggt actgccgttg
     1021 gagtaattaa cccagaggcg ccttatcggg tggttataga ggggcatgcc gatgaaatct
     1081 cctggtatgt gaactacatc agcgataatg gtctaatcta cgtgattcgc aatggaggca
     1141 gtgaccacca aatcgctccc tccaaattag tggacattca cactaaaaaa gggatcgtaa
     1201 aaggtgtctt tggctggcca gcaatacata cgcgtaaagc cgataaagaa gaaacaccaa
     1261 aactcgacaa tatatttatc gatatcggag cggccgataa aaaagaagtt gaaaaaatgg
     1321 gcgtacacgt aggctgtgtg attacctacc cagatacgtt tcatatcatg aacaaagaca
     1381 aattcgtgtg tcgtgccttg gacaaccgca tggggggctt tatgattgct gaggtggcac
     1441 gtttattaca taaaaacaaa aagaaacttc cttttggact ctatatcaca aactctgttc
     1501 aagannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntacca
     1561 ctacaccgat gattgatgcc aaaacccagg gctacgcaaa gattggaaaa ggacccgtta
     1621 ttgcctatgc tccggcggtg cagcaaaaac ttcgtgattt aatcgtggat actgctgaaa
     1681 aggaaaagat tcctttccag cgcgcggcaa attcacgcta tacaggcacc gatactgatg
     1741 cgtttgccta cagtaatggc ggagtcccta gcgcgcttat ttcattgccg ctgcgttata
     1801 tgcataccac tgtggagatg gttcatcgta aagatgtaga aaatgtcatt actctgattt
     1861 atcactcatt gcttaatatg aaggctgggg atacctacag ctattttgaa taaagatcag
     1921 cacatccata ttgatttggt taaaatgggt aaacttatta tcgctgccaa ttgatccaaa
     1981 aagctattgc ttgtccttta aaactgcatt gatgatacgc ctaagtttag tttttattta
     2041 tatagttttg tgtattggta atgtgactgt tacacatgct caagtaaaac aaaactttaa
     2101 gttctctacg gaaattttat atggaatttc tgccgaggcc aatgacttct ttcctgagcg
     2161 tgatcctcag tttagttttg ttttaggtat cgggaagact ttagaactcc cgggtaagtt
     2221 acccgctaaa aatcccaaca ttggccttct ggggatgtat accgatttgg gcaataccga
     2281 attattgggt cattcctatg cccttattcc ctatgtctca tttccaattt ttggaaaaca
     2341 ctggaagggc agccgtctta agtttggatt aggaggggcc tactttgata cgcgttttga
     2401 tcctgaggct aatttcttta atcaagcggt cactacagac attacttggg cttttcgcgg
     2461 aagtgttcat caaaaattat ggcagaacgc ttatggcttg atggacttgg ggttggtgta
     2521 caatcatcaa tccaatggac acaccaaatt acccaatcaa gggctgaatt cgtttttaat
     2581 ttcgctgcgc caaacctgga attctaaatt tatttatcgc gcatctcatg acgataatga
     2641 ttattcggat gaatcagggg tttggttaaa atctgagcgg gccacaccct attctgcggc
     2701 taattcggtc gatcaattag cacaaaagaa catcaaggaa gatttaaatg agtccaaaca
     2761 acatcaaaca gaggaatatc tcgaagcgcg ctttggatat gggcaaaatg ttttggcccc
     2821 cgcttttaat gatctgcgcc cagtacggac cgtctcaatc acgtggggaa agacccacaa
     2881 gggttatctg cgctggggtg ttggggcttt ttaccgtttt tatcagcact accatgatta
     2941 tatcaagggc aatgaatcct tagtgcgtcc ggggcaagaa ttcgccgagt ttaaggacaa
     3001 tccatggcgc tacggctcaa actttggggt acatctcaat ggcgaagtct tactcgggca
     3061 ttttggagtg agcactcagc taggatttaa cttttataaa cctgcgtacg cgatcgattg
     3121 gcgcattaac gagggctggg attatccgcc acgtgaactc ccgcctaact gggttttggg
     3181 ggagtacaac accaaatatc agcttaaaaa atacatcagc tcacgactcg ggatacgtta
     3241 ctatctctgg gatacgcg
//
LOCUS       DPUP01000214            3275 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13269,
            whole genome shotgun sequence.
ACCESSION   DPUP01000214 DPUP01000000
VERSION     DPUP01000214.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(93..284)
                     /locus_tag="DHV98_08160"
                     /pseudo
     CDS             complement(93..284)
                     /locus_tag="DHV98_08160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008610679.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing stop; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
     gene            complement(334..675)
                     /locus_tag="DHV98_08165"
     CDS             complement(334..675)
                     /locus_tag="DHV98_08165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013687856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06311.1"
                     /translation="MRTFLLFGLLFGLLSQNIWSQKVFSTEYAHQADLRVFVVDYAHQ
                     ADLSVYRVDYAHQVKGNEGLWFFTAYPHQADKLVFFVDHAHQADLQVYFVDYAHQAHW
                     RTASKKHLMFR"
     gene            822..>2512
                     /locus_tag="DHV98_08170"
     CDS             822..>2512
                     /locus_tag="DHV98_08170"
                     /inference="COORDINATES: protein motif:HMM:PF07715.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06312.1"
                     /translation="MSKSRTRLSLSVILSFTTALILSQETATSIPTDSLKTSQRLQTV
                     ILSYNSVLDGFSAEQRTGSAQKLTKQEIKKIGTLDPNRLFQRVAGIQVYEEDGFGLRP
                     NISMRGTAPQRSAKINLMEDGILMAPAPYSAPAAYYFPSLGRMDAIEVYKGSSQIEYG
                     PNTSGGAINFLSAPLPQDFTFEAQGTAGRFNTNNQQISFGNKHQDFSYIAQWLGYQSN
                     GFKQIDGGGPSGFNKQDVLGKFQWTPQSLGKKHALIFKVGFAQEEANETYLGLSQEHF
                     DQNPLRRYASSSKDQMKSYHQQFSLTHLWSPNKFISLKTVGYNNIFRRNWYKLDKVTA
                     QGETLSLAQILNDPETFPLAYQSLTGPDNLDQTSLAVKANNRRYFSRGIQSQLDWQSR
                     SDPTRGLSIGIRVHQDAEDRFQWVDTYRLENQKMNLIDKGIRGSDANQIKKATALSGF
                     VLLTQKIGKFTLKPGIRLESIALRAVDYGPLNLDRIGLPTENTLNTNFVVIPGLGFCY
                     KWDNQTTVFGGLHKGFSPPGFTPEQESEISWNNELGLRHNQNNFSAEAVGFFNHF"
     assembly_gap    2513..2655
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2656..3102
                     /locus_tag="DHV98_08175"
     CDS             <2656..3102
                     /locus_tag="DHV98_08175"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06313.1"
                     /translation="QFTLSKSKKIVLPISLVYTWTKNSFLSAFESDNALFGSVQPEDE
                     MPYIAPHQGSLMISLTHPRWSAHLNTRYQSAQRSVAGQGPIGPNQIIPQRTIIDLALN
                     YQISAAWGTQLSVINATDQVYLAARHPAGLRPGHPRGISLSLNYRY"
BASE COUNT          962 a          735 c          652 g          783 t
ORIGIN      
        1 ggcttagcgc ttccttctac aaaaacttca aagtttgaat gatccggcgc acgacctatg
       61 ccttgtgact cctttgattg ctcagaaaat ggagtgtagc tcaaagtggt ctttgtgaga
      121 caattactca gcgtaaaact aatactcgca ttttttggaa tttgtccctg agatttaccc
      181 caatatttca ctaaagcgat attgctcggt gccgttaccg ttattgaccc acgcgcactc
      241 ggaagttcaa gctgaggcag tgtcaaaaaa gatgctgtaa tcatgggcga tgtattaatg
      301 aagaccgtcg caaagataac gaaaacccaa aggtcagcga aacatcagat gttttttaga
      361 agcggtgcgc caatgggctt gatgggcata atcgacaaaa tacacctgga ggtctgcctg
      421 atgggcatga tccacgaaaa aaaccaactt atccgcttga tggggatatg cagtaaagaa
      481 ccaaagccct tcgtttccct tgacttgatg ggcataatcc acacgataaa cagataagtc
      541 cgcctggtgg gcataatcca ctacaaatac tctaagatcc gcctgatggg catattctgt
      601 actgaatact ttttgactcc agatattttg agagagaaga ccaaaaagca gcccgaataa
      661 taaaaatgtt cgcatgccta tgaaatgaat aattcactta aaatcaacac aataaatatg
      721 ccgtttttca aactaaaaaa agatgactaa tctccttgga tttttgaact ttggctccta
      781 catttgcgct ttatttttaa ccagtctaaa taaaattaga gatgtcgaaa agtagaacga
      841 gactaagcct tagtgtgatt ttaagtttta cgactgccct aatcttgtcc caagagacgg
      901 caacctctat cccgacggac tccctaaaaa caagccaacg ccttcaaacc gtaattctct
      961 cttacaattc ggttttagat ggatttagcg ctgagcaacg cactggttcc gcacaaaagc
     1021 tcaccaaaca agagattaaa aaaattggca cactggatcc caaccgattg tttcagcggg
     1081 tggcagggat tcaggtttat gaggaagacg gttttgggct aagacccaat atcagcatgc
     1141 ggggcaccgc cccccaacgc agtgcaaaaa ttaacttaat ggaagatggt attttgatgg
     1201 ctccagcgcc ttacagcgcc cctgcagcct actattttcc ttccctgggg cgcatggatg
     1261 ccattgaggt ctacaaggga agcagccaaa tagagtatgg tccaaatacc tctggagggg
     1321 caattaactt tttgtctgcg ccgcttcctc aggattttac attcgaggcc caaggaacag
     1381 cgggaagatt taataccaat aatcagcaaa tttcctttgg aaacaaacac caagactttt
     1441 cgtatatcgc tcagtggttg ggctaccaaa gcaatggatt caaacagatc gacgggggtg
     1501 gaccttcagg atttaacaaa caagatgtgc tgggaaaatt tcaatggacc ccccaatcac
     1561 ttggtaaaaa acatgccctg atttttaaag taggctttgc tcaagaggag gccaacgaaa
     1621 cttaccttgg gctcagtcag gaacattttg atcaaaatcc attgagacga tacgcctcct
     1681 cctctaaaga tcaaatgaag tcctatcatc aacaatttag tctaacccat ctttggtcgc
     1741 ccaataaatt catcagttta aaaactgtag gatacaataa tatttttcgc agaaattggt
     1801 ataaacttga caaggtcacc gcacaaggag aaaccctgag tcttgcccaa attctgaatg
     1861 atccagaaac gtttcctctg gcctatcaaa gccttactgg tcccgataat ttagaccaaa
     1921 cgtctttggc cgtcaaagcc aataatcgac gatatttttc tcgtggaatc caaagtcaac
     1981 tcgattggca atctcggtca gacccaacca gaggtttgag tatcggaata agagtgcacc
     2041 aagacgcgga agaccgattt caatgggtgg atacgtaccg actggaaaat caaaaaatga
     2101 atttgatcga caaaggaatt cgtgggagtg atgccaatca aataaaaaaa gcaacggctt
     2161 tatcaggttt tgttttactg acgcaaaaaa ttggaaaatt caccctaaaa ccaggtattc
     2221 gtctcgaatc gatagcgctg agggctgtgg attacggacc attgaatctc gaccgtattg
     2281 gcctccctac agagaacacc ctaaacacaa attttgtcgt cattccggga ttaggtttct
     2341 gttataaatg ggacaatcaa acgaccgtat ttggtggttt gcataaagga ttctccccgc
     2401 ccggctttac cccagaacaa gaatctgaaa tcagctggaa taatgaatta gggctgcgtc
     2461 acaatcaaaa taattttagt gccgaagcag taggtttttt caaccacttt gannnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnncaatt caccctgagt aaatccaaaa aaatagtcct ccccattagc
     2701 ctcgtgtata cctggactaa aaatagtttt ctctcggcgt ttgagagcga caatgccctc
     2761 tttggctcgg tccaacctga agatgaaatg ccttatattg cgccacatca gggcagtctt
     2821 atgatcagcc taacgcatcc ccgctggtcg gctcacctca acacacgata ccaaagtgcc
     2881 cagcgcagtg tggcaggtca aggcccgata ggaccgaacc aaataatccc ccaacgcacg
     2941 atcatagacc tcgccttaaa ttatcaaatc agtgcggcct ggggcaccca gttatcggtg
     3001 atcaatgcca ctgatcaagt ctatctagcg gcgcgccacc ccgctggatt gagaccaggc
     3061 catccgcgag ggatttcctt aagtttgaat taccggtatt gagcacccct ccaaattaag
     3121 cccaaacctc agcccttgaa tcgagcaaag tccgcagagt caaacgctca attaaacgca
     3181 gaatcaaacg ctcgattaaa cgcagaaata atcctcttga cctaaaataa aaaacccgga
     3241 agaaattccg ggttttgtgc ggctgaaggg agtcg
//
LOCUS       DPUP01000215           18274 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12008,
            whole genome shotgun sequence.
ACCESSION   DPUP01000215 DPUP01000000
VERSION     DPUP01000215.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 18274)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 18274)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18274
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..609
                     /locus_tag="DHV98_08180"
     CDS             <1..609
                     /locus_tag="DHV98_08180"
                     /inference="COORDINATES: protein motif:HMM:PF00275.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HCK06314.1"
                     /translation="WSVESDWSGASYWYSMVALSTQWRIGLRYFSPKSLQGDRTIADL
                     FQVLGVHTEFDEKEQCIWLSKLNQTLPKSISWNLIDTPDLAQTIAVCCFGLGIGCHLT
                     GLHTLKIKETDRLSALSIELTKLGALVDITENSLHLSSREHPINPEVYIDTYKDHRMA
                     MAFAPLGVKAPIGIVNPEVVTKSYPNFWNHMIEVGVTVVSGN"
     gene            686..1735
                     /locus_tag="DHV98_08185"
     CDS             686..1735
                     /locus_tag="DHV98_08185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010182062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HCK06315.1"
                     /translation="MKLSNFNFNLPPELLAEYPAPNRDEARLMVLDRKNKTIEHKMFK
                     DLIDYFDEQDVLVLNNTKVFPARLYGNKEKTGARIEVFLLRELNAETRLWDVLVDPAR
                     KIRIGNKLYFGDDDSLVAEVIDNTTSRGRTLRFLFDGSYQEFRDKLTELGETPLPKYI
                     KREVEPEDAERYQTIFAKNEGAVAAPTAGLHFSKHLMKRLEIKGVNFAEVTLHVGLGT
                     FSPVEVEDLSKHKMDSEEIIIDPKAVQSINTGIAQKRRVCAVGTTVMRVLESSVSSKA
                     TLNPYQGWTNKFIFPPYDFSIANAMVTNFHTPKSTLLMMVSAFAGHDFIKEAYAEAVK
                     ERYRFYTYGDAMLII"
     gene            1844..3499
                     /locus_tag="DHV98_08190"
     CDS             1844..3499
                     /locus_tag="DHV98_08190"
                     /inference="COORDINATES: protein motif:HMM:PF00089.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06316.1"
                     /translation="MLKYWSLFFLVLSPALWGQGNAPEPRGWSYNLESPQYVHLADLD
                     MAHVMAEDLVADQDKSMPWRYGIERQVTIDIFTHGHWSELSDGTRIWRIALRSPGALN
                     MSLNFSDFYIPQGGQLQFYNATQTDWSKVHGSRATSVRTFGSWFIDGDEIIIEYVAQP
                     NTTELPRLRVESLIHGYRMGAVNQLVEQQNQSRDFEDSGDCHYDVNCSVGESFDGHRN
                     QLKKAVALLNLGNGYLCSAVLVNNAKEDKTPYVLTANHCLENSNPDFWSLRFNWISPD
                     PVCGTEENSVDIGTNFTVNGAQLRAKSGRSDFALVELNEPIPASWDVAFAGWDRTDEL
                     PQYQIGIHHPQGDVMKICRDDDPMERDIANGKEVWLIKGSDVGASNGWDIGSTEGGSS
                     GSPLFNDQGQIIGQLHGGMAHCDGIQSNGRYDLYGRFASSWSGGNTPEQRLSDWLDPD
                     GLGIDQLGTLENALSIGDFDLEGLVSVYPNPARDYISIQNTKYPHLRGHIFALTGQRL
                     MTLDLSATENEVNVSSLAPGIYLLYLEDRDSGNIVTKKLQIQP"
     gene            3546..4586
                     /gene="rlmN"
                     /locus_tag="DHV98_08195"
     CDS             3546..4586
                     /gene="rlmN"
                     /locus_tag="DHV98_08195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HCK06317.1"
                     /translation="MTMTKKDIRRLSLEDLRLFFTEQGQQAFRANQVYQWLWQKGVHN
                     FEEMTNLSLETRDLLQEHFVINHISVDQMQRSSDGTIKNAVRLHDDLIVESVLIPTKT
                     RTTACVSSQVGCSLDCTFCATARLKRMRNLNPDEIYDQVMAIHQESLLYHDRPLSNIV
                     FMGMGEPLMNYNNVLLAIEKITGDEGLGMSPKRITLSTSGVPKMIKKLADDQVKFHLA
                     LSLHSAIQEKRQVIMPFAERFVLDDVLEALVYWYEKTNRRVTFEYIVWEGFNDTDEDI
                     RALVRFCKKVPCKVNIIEYNAIDDGGFKQAPAHRVEAYTQALEKAHIPVTVRRSRGND
                     IDAACGQLANKH"
     gene            complement(4669..>5250)
                     /locus_tag="DHV98_08200"
     CDS             complement(4669..>5250)
                     /locus_tag="DHV98_08200"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06318.1"
                     /translation="SGGALAGFTSGNYQYPLLMAQGDVIDAGTGFTTTGVRGDLNYYG
                     CAYSNSQWCGDVTDGYLGVRFVSLTTGTTHYGWVRLDTDVNGDNLITVKDFAFEATPD
                     TAIAAGDQGSLGVTDSAFGAFEYHTSDNALHLSSATMMNQVVLHNVLGQEVARQQINA
                     TSATVAMDRLSAGVYIATISAEGQTKSIKISKR"
     assembly_gap    5251..5391
                     /estimated_length=141
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5392..5634)
                     /locus_tag="DHV98_08205"
     CDS             complement(<5392..5634)
                     /locus_tag="DHV98_08205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06319.1"
                     /translation="MKKITSKNLSKRLAQYGAMSAAVMAGADANGQVVYTDVDPDVTL
                     QVGDVFSLDLEADTFEDLSINNPDGLAGGNAAIVFPS"
     gene            5926..8460
                     /locus_tag="DHV98_08210"
     CDS             5926..8460
                     /locus_tag="DHV98_08210"
                     /inference="COORDINATES: protein
                     motif:HMM:PF00685.25,HMM:PF00884.21"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06320.1"
                     /translation="MNKNKLLLIGWDAADWDIIWPLIAQGKMPALASMIKRGVHGNIS
                     TMTPPYSPMLWTSVATGKTPDKHGILGFIEVTQDGQSVRPVTTLSRKTRALWNIFHNQ
                     GLKSNWVGWWPSFPVEPINGCIVSDRFQKTHMDPRVQTPVSPRSVHPWDMVKEFAPLR
                     MFPFEITQAHLYPFVPQAHKVDQEKHKGLHAIGKIVSENSSLHNAATRLLRTSEWDFM
                     AVYHDMIDHFCHSFMKYHPPKHPGVDPANYELFKDAVTGAYIFQDMMLERTLNLIDKD
                     TTVIVMSDHGFESGDKRILNMPKVQAAPSLEHRQFGMFVACGPNIKENEKIYGLGLID
                     IGPTILHHYGLPIGRDMDGKVNLDLFKEPGEATYIDSWDDLPGDFAEIDKKEQTDVLS
                     DAQTMEQLVELGYVERLDEKFEVAIRNTRIDLKHNLARVHLGKKDLSTAKTILLELLE
                     EPKAKDYAPFLMDLISIALKEKDFEAALTHLEAVKNSGTEVSYNLDLTEAQIRSDMGR
                     PKEALTLIEGLLEKDQTGPVWYRYGLLHYELGNFEQAIEAFENAIEKESQIPTYHAAM
                     AEVLLQLDQYEEAAEYALTSVELVKFFPKGHLLLGQALEKLGDLENAELAYEMAAKLK
                     PREFHKAEQSLENIKEKREADYTLENKATHKFYENQIVVVSGLPRSGTSMMMQMLDRG
                     GVDILQDELREADISNPKGYYEYEPVKALYKDNSWLGKARNMGVKIVAPLLKYLDGQY
                     RYKVIFMNRDIHEVIQSQQKMLGKNSEVFPVHLYNQFQHLLKSVTGWQKIEPGVEILY
                     INHKDVIQNPEKVAEQVAKFIGKPLDVNTMASVVDPNLYRNKYQGE"
     assembly_gap    8575..8686
                     /estimated_length=112
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            8688..9673
                     /locus_tag="DHV98_08215"
                     /pseudo
     CDS             8688..9673
                     /locus_tag="DHV98_08215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039036.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase"
     assembly_gap    9301..9368
                     /estimated_length=68
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            9873..>11785
                     /locus_tag="DHV98_08220"
     CDS             9873..>11785
                     /locus_tag="DHV98_08220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HCK06321.1"
                     /translation="MISKFTIDQVFETARVEEVIGDFVQLKKSGTNYKGLSPFTDERT
                     PSFMVSPVKQIWKDFSSGKGGNAVAFLMEHEHFTYPEAIKYLAKKYNIEIEETEQTTE
                     QKAEADKRESLYLVNEFARDYFKSTLTESQQGKAIGMTYFKERGFTLETIEKFQLGYN
                     DDRWDGFTQEALRHGYQMSFLEETGLTIVKGDRQFDRFRSRVIFPIHSMSGRVLGFGG
                     RTLSTDKKVAKYLNSPESEVYHKSKILYGINFAKQGIAKEDNCYLVEGYTDVIQMHQR
                     GLSNVVASSGTALTPEQIRLVNRLTKNMTLLFDGDDAGIRASLRGVDLILEQGMNVRI
                     CTFPQGEDPDSFARNNSLDALQDYLAKNTTDFINFKASLLAKEAANDPIKKSETVRDM
                     VQSIAKIPDHIKQEVYLKECSRIMDISQEVLFSTLAQILRKNRNDAQKTPEVKTPRLD
                     VIQKPKSESKVDVQYALERKIIELLLLYGGHQEEFVETLLAADEHGAVGHKAVSQSTL
                     VYQKIYLDLQEDEIEFTHTQFQELYYRIIEGYHQNPELKIDGFLQSLPHELSEQVTHI
                     LMDEEKHQLHQWDRKLIFVKDKKAGVAQIVAETILNLRRHLVAKKIDELSAQFKEETE
                     SQSGDETLQAVTD"
     assembly_gap    11786..11902
                     /estimated_length=117
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(11980..12621)
                     /locus_tag="DHV98_08225"
     CDS             complement(11980..12621)
                     /locus_tag="DHV98_08225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HCK06322.1"
                     /translation="MSSTKRILIADHHPVIRKGISCMLRKTEQFEIVGKAQNMEELNQ
                     ALEACAPDILIMELELPQLNGVSTLRYIKNEYPKLRILIFSHLAEEIYALRCIKTGAA
                     GYLPKSASPKAFLKALKQLAKGGIYLNDELNASFSPRSVGESSAINRYKKLSTREIEV
                     LNMLSSGKRNKDIAEALDINEKTVSTYKTRLLTKLKVDNIADLINQARLFRLG"
     gene            complement(12703..>13018)
                     /locus_tag="DHV98_08230"
     CDS             complement(12703..>13018)
                     /locus_tag="DHV98_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06323.1"
                     /translation="FALGHYLGIIPEILEAPPTDGLYHDSKTDEEQLGARYDELEWAM
                     AFQKSAQKDNRSLIDSEFGVDSLKLSPRQKEVLSIYLKLNRANQHKMNPIPVCIIPKN
                     LR"
     assembly_gap    13019..13111
                     /estimated_length=93
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(13123..13644)
                     /gene="nadE"
                     /locus_tag="DHV98_08235"
     CDS             complement(13123..13644)
                     /gene="nadE"
                     /locus_tag="DHV98_08235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020590207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HCK06324.1"
                     /translation="MEAEKVAKHIIEWLKSYAKNAKTNGFVVGVSGGIDSAVTSTLCA
                     MTGLPTLCLEMPIHQAVDQSSRAHKHVQKLSAKHKNVTGQSVDLSATFDTFSHAVVRD
                     TDHPRNELSLANARARLRMTTLYYYAGIHEFLVAGTGNKVEDFGVGFYTKYGDGGVDL
                     SPIADLVKSEVFA"
     gene            13770..14699
                     /locus_tag="DHV98_08240"
                     /pseudo
     CDS             13770..14699
                     /locus_tag="DHV98_08240"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="too many ambiguous residues; incomplete; missing
                     stop; Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldB"
     assembly_gap    14120..14136
                     /estimated_length=17
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    14700..14843
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            14946..>15099
                     /locus_tag="DHV98_08245"
     CDS             14946..>15099
                     /locus_tag="DHV98_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014790236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility protein GldC"
                     /protein_id="HCK06325.1"
                     /translation="MATHKSQISIEVDLDENKIPEKLHWSAPDGGVSRQETKALLLSV
                     WDDQSQE"
     assembly_gap    15100..15205
                     /estimated_length=106
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <15206..15409
                     /locus_tag="DHV98_08250"
     CDS             <15206..15409
                     /locus_tag="DHV98_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06326.1"
                     /translation="QEALRIDLWTKTMPLDQMKVFFHQTLVALSGTFERATDDQKMAA
                     TMRDFCDYFAEKLELDTGNTNQD"
     gene            complement(15406..16011)
                     /locus_tag="DHV98_08255"
     CDS             complement(15406..16011)
                     /locus_tag="DHV98_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HCK06327.1"
                     /translation="MEVKSAEFVMSNSAVDKCPNQPLPEYAFIGRSNVGKSSLINMLV
                     QRKSLAKTSGRPGKTQLINHFIINKNWFLVDLPGYGYARVSKKSKKTFQKFITEYFEK
                     RKQLVLAFVLVDIRHAPQPIDLEFMAYLGESQIPFHIVFTKADKLKPNACNLAVEQYK
                     EKLLEFWEEVPHYFVTSSSNNTGREALLSYIHELNADFHQD"
     gene            complement(16021..16785)
                     /locus_tag="DHV98_08260"
     CDS             complement(16021..16785)
                     /locus_tag="DHV98_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCK06328.1"
                     /translation="MGYILKKQKSFSYLDKGEGTPIIILHGLMGGLSNFEGVTAFFSE
                     NGYRVIIPELPIYGLPILKTTVKNLALHVSKFMDFMELEEAIILGNSLGGHIGLLLAK
                     LFPSKVKALVITGSSGLYENSMGESYPKRGDYEYIKEKAQNVFYDPNIATKEIVDEVY
                     ASVNDRNKLIRTLAIAKSAIRHNMADDLPKMHTPTCIIWGKNDTVTPPEVANEFNRLL
                     PDSALYWIDQCGHAPMMEHPETFNQHLHHWLQSKAI"
     gene            17030..17503
                     /locus_tag="DHV98_08265"
     CDS             17030..17503
                     /locus_tag="DHV98_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018944694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HCK06329.1"
                     /translation="MLNLIGTYHCKADNKGRVMVPADLKKQLSAVLAEGFVLKRAVFQ
                     PCLELYPMDQWNELMQKIGGLNQFNRKNNDFTRRFTAGVRRIELDATGRMNIPADLMS
                     VAQIKRDLVLTASVGIVEIWDAQKYEQAISDAALDFADLAEEVMGTPNTTANELS"
     gene            17490..>18274
                     /locus_tag="DHV98_08270"
     CDS             17490..>18274
                     /locus_tag="DHV98_08270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009781500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytosine(1402)-N(4))-methyltransferase"
                     /protein_id="HCK06330.1"
                     /translation="MSYHDPVLLSETVAGLAIKPDGIYVDVTFGGGGHSRYLLSQLGP
                     QGRLIAFDQDQDALHNRIDDPRFLLIHQNFRYLKRFLKFHGVAQVDGIMGDFGVSSHQ
                     FDEGERGFSTRFDGALDMRMNQEQGLTAAQILNEYSVEQLTVLFREYGELRNGAKLSR
                     VIEAARKEKMIKTTEELKSIVRPFMPRNKEHKIMAQIFQAIRLEVNQELSVLKEFLLQ
                     TKEVIKPSGRLSLISYHSLEDRLVKRYMRHGLFEGLPEKDVFGR"
BASE COUNT         5019 a         3498 c         4036 g         4923 t
ORIGIN      
        1 tggtctgttg agtccgattg gagtggggcg tcttattggt acagcatggt cgcccttagc
       61 actcagtggc gtattggttt acggtatttc agcccaaaaa gtttacaagg tgaccggacg
      121 attgcggacc tttttcaagt gcttggggtc catactgaat ttgatgaaaa agagcaatgt
      181 atttggctca gtaagctgaa ccagaccctg ccaaaatcta tttcttggaa tttgatcgac
      241 acccctgatt tggcgcagac cattgctgtg tgctgctttg gtctcggaat aggatgtcat
      301 ttaacaggat tgcataccct caaaataaaa gagaccgacc gactcagcgc cttgtccatt
      361 gaattaacca aactcggggc cttagttgat atcaccgaaa attctttaca cttgtcttct
      421 cgagagcatc cgataaatcc tgaggtttat attgacacct ataaggacca ccgcatggct
      481 atggcttttg cgcccttagg agttaaggcg cctatcggta ttgttaaccc agaggtcgtg
      541 accaagtcct atccaaattt ttggaatcac atgatcgagg tcggagtcac ggtggtttct
      601 ggtaattaat tgccgtttta cttgacaacg gccttttgga ggtcgtatat ttgccccctt
      661 taacacaaga ccacgctcta tgggaatgaa actctccaat tttaatttta atctacctcc
      721 agaacttttg gctgaatatc cagcgccaaa tcgggatgag gcaagactca tggttttgga
      781 tcgcaagaac aaaaccatcg agcacaaaat gttcaaggac ttaattgatt atttcgatga
      841 gcaagatgtt ttggtgttaa ataataccaa ggtttttcct gcaagactgt acggaaataa
      901 agaaaaaacc ggagcgcgta ttgaagtatt tttgctcaga gagttaaacg ctgaaacccg
      961 cctatgggat gtcttagtgg atccagcgcg aaaaatcaga attggaaaca aattgtattt
     1021 tggagatgac gattcacttg tagctgaggt tattgacaat acaacctcac gaggaagaac
     1081 acttcgtttt ttatttgatg ggtcttatca agagtttcgc gataaattaa ctgagctcgg
     1141 agaaacgcca ttgcctaaat atattaaacg agaggtagaa ccagaagatg cagagcgtta
     1201 tcaaacaatt tttgctaaaa acgaaggggc ggttgcggcc ccaactgcag gcttgcactt
     1261 ttcgaagcat ctgatgaaac ggcttgaaat taaaggggtt aattttgctg aggttacact
     1321 tcacgtagga ttgggaacct ttagtcccgt tgaggtggaa gatttgtcta agcataaaat
     1381 ggacagtgag gaaattataa ttgaccccaa agcagtacaa tcgatcaaca cgggaattgc
     1441 gcagaaacgg cgcgtgtgtg ccgtgggaac gacggtaatg cgtgtccttg agagctctgt
     1501 ctcctcaaag gccaccttaa atccttatca ggggtggacg aataaattta tttttccacc
     1561 ttatgatttt agtatcgcca atgccatggt cactaatttt catacaccaa agtccacgct
     1621 actgatgatg gtatcggctt ttgcgggtca tgactttatc aaagaggctt atgctgaggc
     1681 ggtgaaagaa cgctacagat tttataccta tggggatgcc atgttaatca tctaatgagc
     1741 ccttataaag acaaaaaacc ctcgaatatc gagggttttt ttatgtggga tatctttttt
     1801 ttaattacct tagaagttat ctaaacacat gagattcaaa taaatgctta aatactggtc
     1861 cctattcttt cttgtattaa gcccggcgct ttggggtcaa ggtaatgctc ctgagccaag
     1921 gggttggtcc tataacctag aatctcccca gtacgtgcat ttagccgatc ttgatatggc
     1981 ccatgtaatg gctgaagatt tggtggctga tcaagataag tctatgccat ggcgctatgg
     2041 aatagagcgt caagttacta tcgatatttt tacccatgga cattggtcag aattgtcgga
     2101 cggcacccgt atttggcgta tcgcgttgcg ttccccagga gcactgaata tgagtttgaa
     2161 tttttcagac ttttatattc ctcaaggagg gcaattgcag ttttataatg cgactcagac
     2221 cgattggtcc aaagttcatg gttcgagagc tacttcagta agaacttttg gaagttggtt
     2281 tattgacggg gatgaaataa tcattgaata tgtcgcacaa cccaatacta ctgaattgcc
     2341 tcgactgcgg gtagagagtc tgattcacgg ttatcgcatg ggcgctgtga atcaattagt
     2401 agagcagcaa aaccagtccc gtgattttga ggattcaggc gattgtcact atgatgtcaa
     2461 ttgtagtgtt ggcgagtctt ttgatggcca tcggaatcaa cttaaaaaag cggttgcgct
     2521 gttgaatctg ggtaatggtt atttgtgttc tgctgttctt gtcaacaacg cgaaggaaga
     2581 caaaacccct tatgtattga cagccaatca ctgtttagaa aattctaatc ctgacttttg
     2641 gtctttgcgc tttaattgga taagtcccga tcccgtttgt ggcactgagg agaatagtgt
     2701 tgatattggg actaatttca cggtaaatgg cgctcaattg cgtgcgaaaa gcgggcgttc
     2761 agatttcgcg ctcgtagagc ttaatgagcc gattcccgct tcctgggatg tagcctttgc
     2821 cggctgggac agaacagatg aacttccaca gtaccaaatc ggtatccatc atcctcaagg
     2881 agatgtaatg aagatttgtc gtgacgatga cccaatggaa cgggacattg ctaatggcaa
     2941 ggaggtgtgg cttatcaaag gctcggatgt aggcgccagt aacggatggg atatcggcag
     3001 tactgaagga ggctcttctg gttcaccgct gtttaatgac cagggacaga ttattggcca
     3061 attgcatggg ggtatggccc attgcgatgg gatacaaagt aatgggcgtt atgatttata
     3121 cgggcgtttt gcgagttcat ggtccggagg aaatactcca gaacagcgtt tgagcgattg
     3181 gctggaccca gatggtctcg gcattgatca attagggacc ctagagaatg cgctgagtat
     3241 tggtgatttt gatcttgaag ggcttgtgtc tgtttaccca aatcctgcaa gggattatat
     3301 ttccattcaa aacaccaaat atcctcactt gagggggcat atttttgcgc tcacaggtca
     3361 acggcttatg accttggatt tatccgccac agaaaatgag gtcaacgtca gttcattggc
     3421 tccaggaatt tatttgctgt atttagaaga tagagattcg ggaaacatcg tgacgaaaaa
     3481 attacaaatc caaccttaat ccctgcttaa acattcttgg ctaaagttgt acttttacgc
     3541 catctatgac gatgacaaaa aaagacatca gacggcttag cctagaggat ttacgtttgt
     3601 tttttactga gcaaggtcag caggcctttc gcgccaatca agtttatcaa tggctttggc
     3661 aaaagggcgt tcataatttt gaggaaatga ccaatctctc tttggaaacc cgagacttgc
     3721 tccaagagca tttcgtaatc aatcacatta gtgttgatca aatgcagcgc agcagtgatg
     3781 ggaccataaa aaacgcagtg cgtttacacg atgatttgat tgtggaatcg gtcctcattc
     3841 ctactaagac gagaactacg gcctgtgttt cctcgcaagt gggatgtagt ttagactgta
     3901 ctttttgcgc tacggccagg cttaagcgca tgcgtaatct aaatccagat gagatttacg
     3961 accaggtcat ggcgattcat caagagagtc tactttatca cgatcgtccg ttgtcaaaca
     4021 tagtctttat gggtatgggc gaaccactga tgaactacaa taatgttcta ttggccattg
     4081 agaagattac cggtgatgag ggattaggga tgtctccaaa gcgaattacc ttgtctacct
     4141 ccggggtgcc caaaatgatc aagaagctgg ccgatgacca ggtgaagttt cacttggcct
     4201 tgtccttaca ttctgcaatt caagaaaagc gtcaagtaat tatgccattt gctgagcgtt
     4261 ttgtgctcga tgatgttttg gaagcacttg tttattggta tgaaaaaacc aatagacgcg
     4321 ttacttttga atatatcgtg tgggagggct ttaatgatac tgatgaggat attcgcgcac
     4381 tggtgcgttt ttgtaaaaag gtgccctgta aggtaaatat aattgaatat aatgccattg
     4441 atgacggagg gttcaaacag gcgccagcac atcgcgtcga ggcctatacc caggccctag
     4501 aaaaagccca tattcccgtt actgtgcggc gcagtcgtgg aaacgatatt gatgctgcat
     4561 gcggtcaatt ggccaacaag cattaaagtg cacaaaaaaa agtatagaaa aaagcgagcc
     4621 tctacgaggc tccctttttt ggtattaaac tttaaaccgt acgctaaatt aacgcttgct
     4681 tattttgatc gatttagtct gaccttcagc agagatcgta gcgatgtaaa caccagcgct
     4741 caaacgatcc atagctacag tagctgatgt cgcgttgatt tgctgacggg ctacttcttg
     4801 gccaagaaca ttgtgcaata caacttgatt catcatggtg gctgaactca agtgaagcgc
     4861 attgtcactt gtgtgatatt caaaagctcc aaaagcagag tctgtaaccc caagagaacc
     4921 ttgatctcca gcagcgattg cggtatcagg agttgcttca aaagcaaaat cttttacagt
     4981 aataaggtta tctccattta catcggtgtc caaacgaacc catccgtaat gtgtagttcc
     5041 tgtagttaag ctcacaaaac gtaccccgag atatccgtca gttacatcac cacaccactg
     5101 gctgtttgaa tatgcacaac catagtagtt taagtcacca cgaactccag ttgttgtaaa
     5161 accggttccc gcatcaatga catcaccttg tgccataagt aagggatatt gataattacc
     5221 tgaagtaaat ccagcgagtg caccccctga nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nacttgggaa
     5401 tacaatcgca gcgtttccgc cagcaagtcc atcaggattg ttgatagaaa gatcttcaaa
     5461 ggtatctgct tcaaggtcaa gtgagaatac atcaccaact tgtagggtaa cgtctgggtc
     5521 tacgtcagta tagaccactt gaccattggc atcagcaccg gccataaccg ctgcagacat
     5581 tgcaccgtat tgtgctaatc tttttgataa atttttcgaa gtaatttttt tcataaacta
     5641 aaaattggaa ttaaaacttt tctttcgcag ctttgctgct tgtcgtaaat atatgaatta
     5701 aagattattt taattcaata aaggccataa aatggtccaa atcattgagc tttttactaa
     5761 aaaacacaaa ttttatgatc aaaaatagcc aattagagcg cgagcgtttc gatcctgaca
     5821 atattcctgt cgaaggttca ttaggcttgt tggccttggg agatctaggt tttgaggctt
     5881 ggcgaaaggc aaaaggccat ttgcgcaaca acaagaatat tgtccatgaa caaaaataaa
     5941 ttgctcttaa tcggttggga tgcggcggac tgggacatca tttggcctct aattgcccaa
     6001 ggtaaaatgc ctgccctggc ctcgatgatc aaaagaggag ttcatggcaa tatcagtacg
     6061 atgactccac cttattctcc aatgctatgg acgtcagtgg ctacgggaaa aaccccagac
     6121 aaacatggta ttctcggttt tatcgaggtc actcaagatg gacaatccgt acgcccagtg
     6181 acgaccttgt cgcgcaaaac gagagccctc tggaatattt tccacaatca aggactcaag
     6241 tctaattggg tgggatggtg gccaagtttt cccgtcgaac ccattaatgg atgtattgtt
     6301 tctgatcgtt ttcagaaaac tcatatggac ccacgggtgc aaacccccgt gagcccgaga
     6361 tcagttcatc catgggacat ggtcaaggaa tttgccccgc tgaggatgtt tccctttgaa
     6421 atcactcagg cccatttgta tccttttgtg ccccaggccc ataaggttga tcaagaaaaa
     6481 cacaaaggac ttcacgccat aggcaaaatt gtttccgaaa atagctcact gcacaacgcg
     6541 gcgacacgat tattgcgcac ttctgagtgg gattttatgg cggtctatca cgatatgatc
     6601 gatcatttct gccacagttt tatgaaatat catccgccga agcaccctgg tgtggatccc
     6661 gccaattacg aattgttcaa agatgcggtt acaggggcct atatctttca ggacatgatg
     6721 ctcgaacgta cgttaaatct tatcgataag gacaccacgg ttattgtgat gtccgatcat
     6781 ggatttgaat ctggggataa gcgtatcctc aatatgccca aagtacaggc cgccccttct
     6841 ttggagcacc gacagttcgg gatgtttgtc gcctgtggac ccaatatcaa agaaaacgag
     6901 aaaatttatg ggctcggact catcgatata ggaccgacga tccttcatca ctatggactg
     6961 cccattgggc gcgacatgga cggtaaggtc aatctagatc tttttaaaga acctggcgaa
     7021 gccacttata tcgacagttg ggatgatttg cctggcgact ttgcggaaat tgacaaaaaa
     7081 gagcaaaccg atgttttatc tgacgcccaa acgatggagc agctggttga actgggctat
     7141 gtggagcgtc ttgatgagaa atttgaggta gccattcgca atacgcggat tgatctcaaa
     7201 cacaatttag cgcgcgtgca tttgggtaaa aaggatttaa gcacggccaa aaccatttta
     7261 ctagagttac tcgaagagcc caaagccaaa gactatgctc catttctcat ggatctaatc
     7321 agtattgcgc tcaaagaaaa agattttgaa gcggctttaa cccatttaga ggcggtcaaa
     7381 aactcaggaa cggaagtttc ttataacctc gatttaaccg aggcccagat tcgttcagac
     7441 atgggccgtc caaaagaggc tctgacttta attgagggac tgctcgaaaa ggatcaaacc
     7501 ggaccggttt ggtatcgcta tggtttactg cactatgaat tagggaattt tgaacaagcc
     7561 attgaggcct tcgaaaatgc tatagagaaa gaatctcaaa ttccgaccta tcacgcagca
     7621 atggctgagg ttttgttgca gctagatcaa tacgaagaag cggctgaata tgcgttaaca
     7681 agtgtggagc tagtgaaatt tttcccaaaa ggacatttgc ttttggggca agcccttgaa
     7741 aaactaggag atcttgaaaa tgcggaactc gcctacgaaa tggcagcgaa actcaagccg
     7801 cgcgagtttc acaaagcgga gcaatcctta gaaaatatca aagaaaagcg tgaggcagat
     7861 tatacgctag aaaataaggc gacgcataag ttttacgaaa atcaaattgt cgtggtgtcc
     7921 ggattaccgc gctcaggaac ctcaatgatg atgcaaatgc tcgaccgtgg aggagtggat
     7981 attttacagg atgaattgcg tgaagccgat atctcaaatc ctaaaggtta ttatgaatac
     8041 gagccagtaa aagctttgta taaagacaat tcttggttgg gaaaagcccg aaatatgggg
     8101 gtcaagatag tggcgccctt gcttaagtat ttggatggtc agtatcgcta taaagtgatt
     8161 tttatgaatc gcgacatcca tgaggtcatc cagtcacagc aaaaaatgtt gggtaagaac
     8221 agcgaagtgt tccctgtgca tttatacaat cagtttcagc atctactcaa gtcggttacg
     8281 ggttggcaaa aaattgagcc aggggtagaa atattgtata tcaaccacaa agatgtgatt
     8341 caaaatccag aaaaagttgc ggaacaagtc gccaaattta taggcaagcc acttgatgtg
     8401 aacaccatgg cctctgtagt tgacccgaac ctttaccgca acaaatatca aggcgaatga
     8461 tggtcacaaa gaaacgctta gttttatgaa aatcaccgcc caaatcaagg cgcctataga
     8521 ggcggaaatg gagctttttg aaaaaaagtt ttacgcttct atgtcttcaa aagannnnnn
     8581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnntatg tcttcaaaag
     8701 tggccttgct gaatcggatc acgcactttg tggtgaatcg aaagggtaaa cagatgcgcc
     8761 ccatgtttgt gtttttggtg gcaaagttgt gccgggctga aggagttcag gagcgcacct
     8821 atcggggtgc ttcagttatt gaattgatcc acacggcgac tttagtacac gatgatgtcg
     8881 tcgatgacag caatcaacgc cgaggttttt tctcgattaa tgccttgtgg aagaataaaa
     8941 ttgcggtcct ggtaggggat tatttgctct ctaagggttt attgttgtgt attgatcatg
     9001 atgattttga tttacttaaa atcatttctg tcgctgttcg atcgatgagt gaaggagagc
     9061 ttttgcagat cgaaaaggcc agacgtcttg atattacaga agaggtttat ctcgaaatta
     9121 taaaacaaaa gacagcgacc ctgattgctt cttgttgtgc tattggcgcg cgtagtgtgc
     9181 atgctccaga ggaagaagtc cagcaaatgt gggcctttgg agaagcctta gggatggcct
     9241 tccaaattaa agatgattta tttgactacg gcagtgcaca aatcggtaag ccactaggga
     9301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9361 nnnnnnnngt aagccactag ggattgatat aaaagaacgc aaattaacca tgccgcttat
     9421 tcacgcctta aatcaggcca ataagcagga gcgacgatgg ctgcttaact caattaaaaa
     9481 tcacaatcgt gataaaaaac gcgtaaaaga ggttattgaa aaggttaaat cattgggtgg
     9541 attgacttat gctgtcgaca aaatgaagca ttatcaggcc caggcaatgg ccattttaga
     9601 cacttatccc gaaggcccca taaaatcatc tctttccttg atgattgaat acgtgatcga
     9661 tcgaaaaaag taaattcttg atttaggcca atcaatgggg ccttggtcta atttcaatag
     9721 tcctgtttta tcagtcgtga atcaacgcgc gataaccttg ccttggtttg ccgaattgta
     9781 ttaaatttat atccgtagtc ttgccgataa ttttagacac aaaatttcag acagaaaatt
     9841 tcagacacaa aattttagac acaaagtttt agatgatttc taaattcacc attgatcaag
     9901 tttttgaaac cgctcgagta gaagaggtga ttggtgattt tgtgcaactc aagaaatctg
     9961 gaacaaacta taaagggtta agcccattta ctgatgaacg cacaccgagt tttatggtgt
    10021 cgccggtgaa acaaatttgg aaagatttta gtagcggaaa gggaggaaat gccgtggcgt
    10081 ttttaatgga acatgaacat tttacctatc cagaggccat taaatacctg gctaaaaaat
    10141 acaatatcga aattgaggaa accgagcaaa ctactgagca gaaggccgag gccgataaga
    10201 gagaatcact ttatctggtc aatgaatttg cgcgtgatta ctttaaatca accttgaccg
    10261 aatcccagca gggcaaggct attgggatga cttattttaa agaacgtggt tttacgctag
    10321 agacgataga gaaattccag ttagggtata acgatgatcg ttgggatgga tttactcagg
    10381 aggctttaag gcacggctat cagatgagtt ttctggaaga gaccgggtta accatagtca
    10441 aaggagatcg gcagtttgat cgttttcgct ctcgtgtaat cttcccgatt cacagtatga
    10501 gtggtcgtgt gttgggtttt ggtggacgca cgctttctac ggataagaag gtcgccaaat
    10561 atctaaactc tccagagagc gaggtgtatc acaagagtaa aatactgtat gggataaatt
    10621 ttgcgaaaca gggtattgcc aaagaggaca attgctactt ggtcgagggg tataccgatg
    10681 taattcaaat gcaccaaaga ggcttgtcga atgttgtcgc ttcgagcggg acggccttaa
    10741 cgccagaaca aattaggttg gtcaatcgat tgactaaaaa tatgaccttg ctctttgatg
    10801 gggatgatgc cgggatacgg gcctcattgc ggggcgtaga tttaatcttg gagcagggca
    10861 tgaatgtccg gatttgtact tttccgcaag gggaagaccc tgatagtttc gcacggaata
    10921 attctttgga cgcccttcag gattatttag ccaaaaacac gactgatttt ataaatttta
    10981 aggcctcttt attggccaaa gaggcggcaa atgatcccat caaaaaatcc gagaccgttc
    11041 gcgatatggt tcaaagtatt gccaagatac cggatcatat caagcaagag gtttacctga
    11101 aggaatgctc gcgaatcatg gatattagcc aagaagtgtt attcagtacc ttggcgcaaa
    11161 ttctcaggaa aaatcgcaat gacgcccaaa agaccccaga ggtcaagacc ccaagattgg
    11221 acgttattca aaagccaaag tcggagtcta aagttgatgt tcaatatgcg cttgagcgca
    11281 aaatcattga gcttttactt ctttatggag ggcaccaaga agaatttgtc gaaactttgt
    11341 tagctgccga tgaacacggc gctgtaggcc ataaagcggt gtctcaatcg acgcttgtct
    11401 accaaaaaat ttatttggat ttacaggaag atgaaataga atttacccac actcaatttc
    11461 aagagctcta ttatcgcatt attgaagggt accatcaaaa tcctgaactc aaaattgatg
    11521 gctttttgca aagtctgccc catgaacttt ctgaacaagt gacgcatatt cttatggatg
    11581 aggagaaaca ccaattgcat caatgggatc gaaaactcat ttttgtgaag gataaaaaag
    11641 ccggtgtagc tcaaattgta gcagaaacga ttttgaattt acgcagacat ttggtcgcaa
    11701 aaaaaatcga tgagttaagc gcgcaattta aagaagagac cgaatcccaa agcggtgatg
    11761 aaacccttca agccgtaacg gattannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11881 nnnnnnnnnn nnnnnnnnnn nnttccgatc ttaacggatt atattggttt aaagaaagtt
    11941 ctttcagaaa aactaaaccg cgtgctttga gctgatcgct tatcccaatc tgaataaacg
    12001 ggcttgattg atcaaatctg caatattatc cacctttaat tttgtgagca gccgcgtttt
    12061 ataggtactg actgttttct cgttaatgtc tagagcctcg gcaatgtctt tgttgcgctt
    12121 tccagaagaa agcatattga ggacttcgat ttctctcgtg gatagttttt tataacgatt
    12181 tattgcgctg ctttctccaa cactacgggg actaaacgaa gcattgagtt catcgtttag
    12241 gtagatgcct cctttggcca attgtttcag tgctttgagg aaggctttag gtgatgcaga
    12301 tttcggtaaa tacccggcag cgcccgtttt gatacatctc aaggcataaa tttcttcggc
    12361 aagatgtgaa aaaataagaa tgcgcagttt tggatattca ttttttatgt aacgcaaagt
    12421 gctgacgcca ttgagttgag gcaattcgag ttccatgatc aatatatccg gagcacaggc
    12481 ctcaagtgcc tgatttagtt cctccatatt ttgcgctttt ccaacaattt caaattgttc
    12541 agtcttgcgc aacatgcatg aaataccctt gcgtataaca gggtgatgat cagctataag
    12601 tatgcgtttt gtggagctca ttaaactcaa atgtaataaa aaccacagtt acaggatttt
    12661 aaatgcaaaa attatcgatg aatgacacgt tgttggtatg aattagcgca agttttttgg
    12721 aataatgcac actggaatgg ggttcatctt atgttgattc gcccggttga gtttgagata
    12781 aatagagagg acttcctttt ggcgcgggct taattttagt gagtccacac caaattctga
    12841 atcgataagc gagcgattgt ctttttgcgc acttttttgg aatgccatag cccactccag
    12901 ctcgtcataa cgcgctccga gttgctcttc atcagtctta ctgtcgtgat aaagtccatc
    12961 ggtcgggggc gcttctaaaa tttctggaat gatgccaaga tagtgaccca aggcaaacnn
    13021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    13081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngctcttccg atctaggcaa acacttcact
    13141 tttaaccagg tctgcgattg gactcaaatc aaccccacca tcaccgtatt ttgtataaaa
    13201 tcccacgcca aaatcttcaa ccttattgcc cgtgccggca acgaggaatt cgtgtatgcc
    13261 cgcataataa tatagcgtgg tcatgcgcag acgggcgcgg gcattagcca gactaagttc
    13321 atttctaggg tgatctgtgt cccgaaccac tgcatgacta aaagtgtcaa aagtagcgct
    13381 taagtcaacc gactgcccgg tcacattttt gtgtttagca gacaattttt gcacgtgctt
    13441 gtgggctctg ctgctttgat ctacggcctg atgaataggc atctcaaggc aaagagtggg
    13501 cagtccggtc atggcgcaaa gggtcgaggt tactgccgaa tcaattccac cgctcacccc
    13561 aacaacaaat ccattagttt ttgcgttttt ggcataagat ttcagccatt caattatatg
    13621 ctttgcaact ttttctgcct ccatggacac cgagattatg cgcaattaat gatacctttg
    13681 tgacacaaaa ataagtaatc ccagctgaaa tactgagcta gagaacctca ctttttatga
    13741 agatcatttt taacgcgcga ataaaattta tgaaggatat gatgaagatg cgattttctt
    13801 taatcggtcc tttattttta ggggttattt tgatttcttg cggtgaaatg tcagagcgag
    13861 agcgtgccat tcaagcgatt gacctgaatg tgcgtgtcga gcgtttcgat cgtgtatttg
    13921 ctcaggcatc gcctgacgat ctcgattcta ttaagcgagc atatcccctt ttttttccaa
    13981 cgcaataccc ggacagtgta tggatcgcta aaatgagtga tacactccaa ttggccattg
    14041 aagaggctgt tttagccgtc ttttcagatg atgcgcttat tgcagagcag agtcgtgatt
    14101 tgctcagaca tatccaatan nnnnnnnnnn nnnnnnactt tgtgccgccc aatgtggtca
    14161 caaccacctc agatgtggac tataagaccc gagtaattgc caatcaaggt tggttgatct
    14221 tgatgctcga taattatttg ggcacggaac atcgttttta ttcgggtttg ccgcgctatg
    14281 tcgccaaaaa tttaaggccc cagatgcttt tttcagatgt tgctacggcc tttggccgca
    14341 agtttgtgcc gccgccatcg gagcgtagtt ttttggctca aatgatttac tatggcaagc
    14401 tcttgtacct aaaagattta tggctgccag agacgaccga tgcggacaaa ataggattta
    14461 ctggggagga gctcaattgg gcgtttgaaa atgaatattt catttggcaa tattttttaa
    14521 cccaagaata cctttacagc acgaattctc gattaaagaa tcgatttatt gatccagcgc
    14581 cttattctaa atttaatttg gatttggata acgagacccc gggaatgatc gggcaatgga
    14641 tcggatggca aatcgtgagg cgatacatga gcaacaatga gatcgacttg aacaccctgn
    14701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    14761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    14821 nnnnnnnnnn nnnnnnnnnn nnnatgaatt tatccgccca ggaattgtac catggttccg
    14881 gatacaagcc ggcaaaataa tttataataa aaatacctcc tgataacgaa ataaaataga
    14941 acataatggc aacacataaa tcacagattt caatcgaagt tgatttggac gaaaacaaaa
    15001 ttcccgagaa attgcattgg tctgctccag atggaggagt gagtcgccaa gaaaccaagg
    15061 ccttattgct ttcggtatgg gacgatcaat cccaggaggn nnnnnnnnnn nnnnnnnnnn
    15121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    15181 nnnnnnnnnn nnnnnnnnnn nnnnncagga ggctttgcgc attgatttgt ggactaaaac
    15241 catgccttta gatcagatga aggtattctt tcaccaaacc ctagtggcgc tatctggtac
    15301 attcgagcgc gcaaccgatg accaaaaaat ggcggcgacc atgcgtgatt tttgcgatta
    15361 ttttgctgag aaattagaac tcgataccgg aaacacaaac caggattaat cctgatgaaa
    15421 gtctgcattg agttcgtgaa tataagacaa gagcgcttcg cgcccggtgt tgtttgatga
    15481 agaagttaca aaataatggg gcacttcttc ccagaattca agcagttttt ctttgtattg
    15541 ctcaacggcc aaattacagg cattgggttt gagtttatcc gccttggtga aaacaatatg
    15601 aaaagggatt tggctttctc ctaagtaagc catgaactcg agatcaatgg gctgtggggc
    15661 gtgtctaatg tcgaccagaa caaaagccaa gaccagttgt ttgcgctttt caaaatattc
    15721 ggtaatgaac ttttgaaagg tttttttgct ctttttggaa acgcgggcat agccgtaccc
    15781 aggtaaatcc actaaaaacc aatttttatt gataataaaa tgattgatca gttgcgtctt
    15841 tccggggcgt ccactggttt tagcgagact ttttcgctga accaacatgt tgattaacga
    15901 agattttcca acatttgaac ggccaataaa ggcatattca ggcaggggtt gatttgggca
    15961 cttgtcaacc gcgctgttgc tcatgacaaa ttccgcagat ttaacctcca taatcgtctt
    16021 ttaaatggct ttactttgca gccagtgatg taaatgttga ttaaatgtct ccgggtgctc
    16081 catcatcggg gcatgcccac attgatcaat ccaatataat gctgaatcgg gcagaagtct
    16141 attaaattca ttggctacct cagggggcgt tacggtatca tttttacccc aaatgatgca
    16201 agtgggggtg tgcatttttg gtagatcatc tgccatattg tgccgaatgg cacttttggc
    16261 aatggccagg gttctgatga gtttattccg gtcgttcaca ctggcataaa cctcatcgac
    16321 aatttcttta gtcgcaatgt ttggatcgta aaatacattt tgggcctttt ccttgatgta
    16381 ctcgtaatca ccgcgtttag gataggattc gcccattgaa ttttcgtaaa gtccagagct
    16441 ccctgtaata acaagcgctt tgactttaga ggggaataat ttagccagca acaaaccaat
    16501 atgccctcct aaggagttgc cgagtataat tgcttcctcg agttccatga aatccataaa
    16561 cttagacacg tgcagcgcca agtttttgac cgttgtcttg agtattggca agccgtagat
    16621 gggtaattca ggaataatta cacgataacc attttcagaa aaaaatgctg ttaccccttc
    16681 aaaattgctc aatccaccca tgaggccgtg caatataatt attggtgtgc cttcaccttt
    16741 gtctagataa gaaaaggact tctgcttttt gagtatgtac cccataattt ggtttgactg
    16801 ccaaaaacaa atttacataa attttaacga aatcaagagc gcttgccaaa gacttaatca
    16861 tctcataatc ttctaaaatt tcggaatata gaatgtcctg tgtatgggtt gtttagggcg
    16921 gaaattggac agtaatcaac agggggtaaa acttattaac aatgtggtaa aaagtggtaa
    16981 aaagtggtaa aataatctgt atatttgaac aaattcaacg caaatcaagg tgcttaatct
    17041 cattggaaca tatcattgta aagcggacaa taagggccgg gtcatggttc cggctgatct
    17101 caaaaagcag ttgtctgctg ttcttgccga aggctttgtt ttgaaaagag ccgtttttca
    17161 gccttgcctt gagttgtatc cgatggacca atggaatgag ctgatgcaaa aaatcggtgg
    17221 tctaaatcaa ttcaatagaa aaaataatga ttttacaagg cgattcactg ctggtgttcg
    17281 tcggattgaa ctcgatgcta ctgggaggat gaatatcccg gccgacttga tgtctgtagc
    17341 gcagattaag cgtgatctgg tgttgacggc ctcagtgggt attgtcgaga tttgggatgc
    17401 tcagaagtat gagcaggcga tttccgacgc cgccttagat ttcgctgatt tggcggaaga
    17461 agttatggga actccaaata cgactgccaa tgagttatca tgatcccgta ctgctgtcag
    17521 aaactgtagc gggcttagcc attaagccag atgggattta tgtcgatgta acttttggag
    17581 gcggtgggca ttcgcggtat ttattatcgc agttgggtcc ccaagggcga ctgatcgcgt
    17641 ttgatcaaga tcaagatgcg ctccacaacc gtatagacga cccaaggttt ttattgattc
    17701 accagaactt tagatacctc aaacgctttt taaaatttca cggtgttgct caggttgatg
    17761 gaatcatggg tgattttggc gtctcgtctc atcaatttga tgagggggag cgcggttttt
    17821 caaccagatt cgatggcgcc cttgacatgc gaatgaatca agaacaggga cttactgcag
    17881 cgcaaatact caatgaatat tcggtggagc aattgactgt attatttcgt gagtacggag
    17941 aattgcgcaa tggggcaaaa ctcagtcggg ttatcgaggc tgcgcgaaaa gagaaaatga
    18001 ttaaaactac cgaggagctc aaatctatcg tgcgtccgtt tatgcccaga aacaaggagc
    18061 acaaaataat ggctcagatt tttcaggcca ttcgcctgga agtcaatcaa gaattgtcgg
    18121 ttttgaagga attcttgttg caaaccaaag aggtaattaa gccttctggg cgcttgagtt
    18181 taatttccta tcacagtctt gaggatcgtc tggttaagcg ctacatgcgt catggtcttt
    18241 ttgaaggatt gccagaaaaa gacgtttttg ggcg
//
LOCUS       DPUP01000216            9975 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_6584,
            whole genome shotgun sequence.
ACCESSION   DPUP01000216 DPUP01000000
VERSION     DPUP01000216.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9975)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9975)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9975
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            38..1057
                     /locus_tag="DHV98_08275"
     CDS             38..1057
                     /locus_tag="DHV98_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06331.1"
                     /translation="MKLRNTLFSLIVAMTAALQAQDGLPVYHDYFADNLYLLHPSMAG
                     ASAYGKLRMTARQQWFDQNEAPNIQTASYHNRVGQNSGLGAIVFNDANGYHSQVGGYL
                     TYAHHLLFSRNRSEINQLSFGMSVGLMESKLDETNFDPSQYDPVIAGIIQTTGYFNVD
                     AGMSYNFLDFAAHFTVKNLLFRNRSLYSEEFESNNQRNYILSMSYGIPGSGGLYYFEP
                     SFLLQYKERTQEQGVDLNFKAFRAMEFGSVYAGLSYRRSFDGAEYLDGAQVRNQKLQY
                     ITPVVGATYKNLMFAYTYSYQTGSVRLESGGFHQITIGYNFLRGRFSGWDQDMRYNGM
                     LRPNF"
     gene            1093..1608
                     /locus_tag="DHV98_08280"
     CDS             1093..1608
                     /locus_tag="DHV98_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HCK06332.1"
                     /translation="MLIKTVRGKTPRYGSDCFIADNATLIGDVVLGAGCSVWFSAVVR
                     GDVNSITVGDHVNIQDGAVIHGTYEKSATTIGNHVSIGHNAIVHGCRIHDHVLIGMGA
                     IVMDDCIVEPYSIIAAGAVVPKNTHIKRGSVYAGVPAKCIKSVSPELMEGEIERIAKS
                     YSMYASWFKED"
     assembly_gap    1624..1761
                     /estimated_length=138
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1762..2605)
                     /gene="murI"
                     /locus_tag="DHV98_08285"
     CDS             complement(<1762..2605)
                     /gene="murI"
                     /locus_tag="DHV98_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016988071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HCK06333.1"
                     /translation="MINKEAPIGLFDSGVGGTSIWREIHQRLPFEHTLYLADSQNAPY
                     GAKSVKEINALSVKNTELLLAQGCKLIVVACNTATTNAIEPLREKYSVPFIGIEPAIK
                     PAALQSKTKSVGILATKGTLNSALFHETANQYGGSINRIEVVGEGLVPLIEQGVVNGP
                     EIEALLIKYLSPMIQAGVDHIVLGCSHYPYLIPTIKRLIPEHINIIDSGFAVARQTQT
                     ILAEKGLLRHEPNSDQTRPIETSAHTSELSSVRLEFWTNADPKPLTQLLNLNAQNNDI
                     EERDH"
     gene            complement(2699..3208)
                     /locus_tag="DHV98_08290"
     CDS             complement(2699..3208)
                     /locus_tag="DHV98_08290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010523304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06334.1"
                     /translation="MKKLNVLLLAALLLFGAQTTVFAQSKVAHINTTELVSVMPEMKA
                     AEGQLEKLQKTYDTEIKAMTKELQAKITQYDAEAANKTEEENRKRIEEVQGMQNNIGA
                     YRQQALQDLQQKEVDLFQPILEKARQAIQKVARAQGFQYVLDATQGSGVILADGKDLL
                     ADVKKELGI"
     gene            complement(3250..4128)
                     /locus_tag="DHV98_08295"
     CDS             complement(3250..4128)
                     /locus_tag="DHV98_08295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06335.1"
                     /translation="MNALKVLFFIVFVAASFTVSHAQRGARIGYIDMEYILENVPEYQ
                     EAKNQLSSKVSKWKRDLDKMRQEIEQLKLNLSNERILLTKELIEEQEEEIKILEDEMI
                     AYQQNRFGPNGDLDVQRRQLVQPIQDQVFNLVQELAEAKKYDFIFDKSADVVMLFAAK
                     RNDISDQILRSINRAAKREEALSRKEGKNIEKEESLSAEESEAKSEREEAIADKKNQR
                     EAMMEERRRKRDSIRMVKQAEFEARRQELLDKRQRRLDSINGVQNNTSNEGSSGAQGP
                     PSGPPVPPGGGDGSGI"
     gene            complement(4167..6842)
                     /locus_tag="DHV98_08300"
                     /pseudo
     CDS             complement(4167..6842)
                     /locus_tag="DHV98_08300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387662.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
     assembly_gap    6074..6107
                     /estimated_length=34
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6790..7476)
                     /locus_tag="DHV98_08305"
     CDS             complement(6790..7476)
                     /locus_tag="DHV98_08305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HCK06336.1"
                     /translation="MDGNGRWAKNQGKFRVFGHEQGAESVREIVEACAELNIPNLTLY
                     AFSTENWRRPKLEVQALMKLLVKALNKELPTLQKNGIRLNAIGNLDALPEKAHKDLKS
                     VMERTSENRHMTLTLALSYGSREEITKTIQEISLKVKNNLISPSDINETIINNHLYTR
                     DLPDVDLLIRTSGEQRISNFLLWQIAYAELHFTETLWPDYTKAHLYNAILDYQNRERR
                     FGKTSEQLNA"
     assembly_gap    7477..7524
                     /estimated_length=48
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(7604..>8081)
                     /locus_tag="DHV98_08310"
     CDS             complement(7604..>8081)
                     /locus_tag="DHV98_08310"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06337.1"
                     /translation="AQIMADDLDSKDTRRLQRGYSFENTLSEVSLGIEYTFWEFDLHE
                     GTPAFAPYMYTGFTYTWYDALRKTGTLFDPVGRETTYAIPMVLGLKKTLGTKFLVGLE
                     VGARYSFTDAIDGSANVGNSEVNNVPFGDTTNNDWYVFTGVTFTYAFGRKPCYCNF"
     assembly_gap    8082..8206
                     /estimated_length=125
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8207..8403)
                     /locus_tag="DHV98_08315"
     CDS             complement(<8207..8403)
                     /locus_tag="DHV98_08315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06338.1"
                     /translation="MRNKFNLIVTFCILGLSVSTQSRAQTYEIGAFVGGANYIGDVGD
                     TQFIAPAGPTFGGIAKWNRSTR"
     gene            complement(8545..9432)
                     /locus_tag="DHV98_08320"
     CDS             complement(8545..9432)
                     /locus_tag="DHV98_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HCK06339.1"
                     /translation="MTRVAVFGQFYHKGSEHFIEVILDTLFAQNIKVCMIRELWDLLK
                     THRITMAHAQRIEIIDVPDEHLDFFISVGGDGTMLKAVTYVRDMNIPVVGINTGRLGF
                     LSTIPKEAIADQLTQLISGAYRISERTLIEVETKGLTSPAEDLNFALNEVSINRKDST
                     SMIRVDVWVDQEHLNTYWSDGLIVATPTGSTGYSLSCGGPIIHPESANLLITPIAPHN
                     LNARPLIIPDDRTVKLKVSSGATHHLMSLDSRIESLPNDSEIIIKKAPFRLKMVHLPE
                     TSFIKTLRDKLYWGEDKRN"
     gene            complement(9447..>9975)
                     /locus_tag="DHV98_08325"
     CDS             complement(9447..>9975)
                     /locus_tag="DHV98_08325"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="acetoin utilization protein acuB"
                     /protein_id="HCK06340.1"
                     /translation="LGALSETDALCLDPNTTLSDVQYALTPFFVRAQNSWFEILEAFA
                     QHQTNIMPVVDAQGVYQGYYELSDIMHLFHSTPFLSAEGVVLIVGRKTNEYSLAELTQ
                     IIESNGGHLLGAFISEQNNDLTQVTLKVSSETITICIEALRRYGFDIISVHEKDSTLN
                     QLKERSEYLDKYLNI"
BASE COUNT         2526 a         2056 c         2118 g         2930 t
ORIGIN      
        1 cattttacat taaaaagata gatatttgta ttctcatatg aaattaagaa acaccttatt
       61 cagtctcatt gttgccatga ccgcggcgtt gcaagcgcag gatggtttgc cggtatacca
      121 tgattatttt gccgacaact tataccttct gcatccttcg atggcaggag cctctgctta
      181 tggaaagtta cgcatgacgg cacgtcagca gtggtttgat caaaatgaag cgcccaatat
      241 acaaacggcc agctatcaca atagagtagg acagaattct ggcctaggcg cgatcgtgtt
      301 taacgatgcc aacggatatc actcacaggt cggggggtat ttgacttatg cccaccatct
      361 gttgttttcg cgaaatcgtt ctgagatcaa tcaactgtct tttggaatga gtgttgggct
      421 tatggagtct aaattagacg aaaccaattt cgaccccagc caatacgatc ctgttattgc
      481 agggattatc caaactaccg gatattttaa tgttgatgcc gggatgtcct ataacttttt
      541 ggattttgca gcgcatttta cggtaaagaa tcttttattc cgaaaccgaa gtttgtactc
      601 tgaggaattt gagtcgaaca accaacgcaa ttatattctt tccatgtcct atggtattcc
      661 cgggtcagga gggttatatt acttcgagcc gtccttctta cttcaatata aggagcgcac
      721 tcaagaacag ggtgttgatt taaattttaa ggcttttcgc gctatggaat ttggatctgt
      781 atatgccgga cttagctatc gtagaagttt tgacggtgcg gagtacttag atggtgctca
      841 ggtgcgtaac caaaagttac aatacattac tccagttgtt ggggcgacct ataagaattt
      901 gatgttcgcc tatacctatt cctatcaaac tggctctgta cgattggaat caggtggttt
      961 tcatcaaatt accattgggt ataatttcct aagaggtcga tttagtggat gggatcaaga
     1021 catgcgctat aacggaatgt tgcgtcctaa tttctaagaa aatttctatt cttcggcccc
     1081 agtttattaa ctatgctgat taaaacggta agggggaaaa ccccgcgata cggatcggat
     1141 tgctttattg ctgataatgc cacgcttatc ggtgacgtgg tcttgggagc ggggtgtagt
     1201 gtctggttta gtgccgtggt tcggggcgat gtaaacagca tcactgtagg agaccatgtt
     1261 aatattcaag atggtgccgt tattcatgga acctatgaaa aatctgccac cactattggt
     1321 aatcatgtct ctattggcca caatgcaatc gtgcatggtt gtcgtattca tgaccatgtg
     1381 cttatcggga tgggcgctat cgttatggat gattgcatcg tagaacccta tagtattatc
     1441 gccgcagggg ctgtagttcc caaaaataca catataaaaa gaggtagtgt atacgccggg
     1501 gtacccgcta agtgtataaa atcagtcagt ccagaattaa tggaaggtga aattgagcgc
     1561 atagcaaaga gttattccat gtacgcgtcg tggtttaaag aagactaaaa gtcctttttg
     1621 aggnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn ntatggtctc gctcctcaat gtcgttattt tgcgcattaa
     1801 ggttaagtag ctgcgttaaa ggcttaggat ctgcattagt ccaaaactcg agccttacgg
     1861 aactaagttc agaagtatgg gccgaagttt ctataggcct agtttgatcc gagtttggtt
     1921 catgacgcaa aagacctttt tccgccagga tagtctgagt ttgacgggct accgcaaatc
     1981 cagaatcgat aatgttaatg tgttcgggta ttagtctttt gatcgtaggg atgagatagg
     2041 ggtaatggct gcaacccaaa acaatatgat ccacaccagc ttggatcata ggactcagat
     2101 attttatcag gagggcttct atttctgggc catttaccac cccttgttcg atcaaaggca
     2161 ccagaccttc tccaacgact tctatgcggt ttatggagcc accgtattga ttggccgtct
     2221 cgtgaaacaa ggcactattt aaagtgcctt tggtggcaag gattccgact gattttgttt
     2281 ttgattgaag tgccgcaggt tttatggctg gttcaattcc aataaacgga acgctgtatt
     2341 tttctctaag gggttctatg gcattggtcg tggccgtatt gcatgctacc acaatgagct
     2401 tacacccttg agccaaaagt aattctgtgt ttttaacact aagggcatta atttctttta
     2461 cagattttgc gccataaggt gcgttttgac tatcggccaa atacagggta tgttcaaaag
     2521 gcaggcgttg atggatctcg cgccaaatag aagtacctcc aactccagag tcaaacaaac
     2581 ctataggcgc ttctttattg atcatagtgt aaaaatagaa actgcccgcg agaagcgggc
     2641 agtttcttta aatttttata agccaaaagg ggcttaaata gcggacaact agaatctctt
     2701 aaataccgag ctctttttta acatcggcaa gtaaatcttt accgtcggct aggataactc
     2761 ctgacccctg tgtggcgtcc agaacatact gaaatccttg agcacgcgct actttttgaa
     2821 tggcttgacg tgccttctct aaaataggct gaaaaagatc cacttctttt tgttgtaaat
     2881 cttgtaaagc ttgttggcga taagcaccaa tattattttg catcccttga acttcttcta
     2941 tacgctttct gttttcctct tcagttttat tggctgcctc agcatcatac tgcgtaattt
     3001 tagcctgaag ttctttagtc atcgctttaa tttctgtgtc gtaggttttc tggagttttt
     3061 ccaattggcc ttctgcagcc ttcatctctg gcattacgga aacgagctca gtggtattga
     3121 tgtgggccac ctttgattgt gcgaaaactg ttgtttgcgc gccgaaaagt aataaggcgg
     3181 ctaaaagtaa tacgttgagt tttttcattt gtaagggtat taaatttctg ttttaaagtt
     3241 tacttagtgt taaattcccg agccatctcc acctcccgga gggactggag ggccgctcgg
     3301 tggcccttga gctccagaag agccttcatt gctggtatta ttttgtactc cgtttataga
     3361 atctagacgt ctttgtcttt tatcgagtag ctcttggcgt cttgcctcaa attcggcttg
     3421 tttgaccatt cgaatagaat cgcgtttgcg acggcgctct tccatcatgg cttctcgttg
     3481 attcttttta tcggcaatag cttcttcgcg ttcgcttttt gcctcactct cttcggcact
     3541 caatgactct tccttttcaa tattcttgcc ttccttgcgg cttaaggcct cctcgcgttt
     3601 ggctgcacga ttaatactgc gcaagatttg gtcggagata tcattgcgct ttgccgcaaa
     3661 aagcatcacg acatccgctg atttgtcaaa gatgaaatcg tattttttgg cttcggccag
     3721 ttcttggact agattaaaga cttggtcttg aataggctgc accagttgac gacgctgcac
     3781 atctaaatca ccattggggc caaacctgtt ttgttggtag gcgatcatct cgtcttctaa
     3841 tatttttatc tcttcctcct gttcttcgat gagctctttg gtgagtaaga tgcgttcatt
     3901 gctcaaatta agtttgagtt gttcaatttc ttggcgcatt ttgtccaaat cgcgcttcca
     3961 cttgcttact ttagaactga gttgattttt ggcttcttga tattctggaa cattctctaa
     4021 tatgtattcc atatcaatat acccaatacg ggcgcctctt tgcgcgtggc tgactgtaaa
     4081 gcttgccgcg acaaatacga tgaaaaacaa gaccttaagt gcattcataa ttctgtatta
     4141 ttgcatagaa ataatcgtgc cacgatttaa aattgttgac cgattatgaa atgagtttcc
     4201 catccatttc ttcctacacc gttcaaaact ggatcgaatc cgtagccaaa atcaatccct
     4261 agtaaaccaa aggcgggcat aaatatacga attcctgcac ctgcagaacg cttaatgtca
     4321 aacggattat aatttctaaa ggtatcataa gccgcacctc cttcgacaaa agagagaacg
     4381 taaatagacg ctaattgttt taaagtaatt ggatatctta attctaaaga gaatttattg
     4441 tagatcgcac taccgtcatt ggtgctcaat gactggttag gataaccccg caattgaacc
     4501 acttcacggc catcgagact gaacgccccg agtccgtcgc ctcctaagaa aaagcgctca
     4561 aatggaggaa taccacggta tttattatag gccccaagga atccaaattc cgcttttggc
     4621 ctcaagacta ggtccccaac caaagtcgta aaccaagtcg cctggaattt tattttgtag
     4681 tattctaacc aattaaaacg ggcttggtca atttcagaaa tacgctcttg cgcatccact
     4741 gcttcgccat cagaggggtc attggccaag acctcttgta aatctttacg ctcggtatcg
     4801 agtcctttat aatccacacc gttgaacgcc gagtacggta aagagagttt ggcattcaag
     4861 ctgaagtctg aaccataacg cgggtagatt gggttagccg atgtgctatt acgtccaata
     4921 cctatggtgt aggcgaggtt gttggaataa ccatcgccaa aagtgaataa ccctgtattg
     4981 taattacgca agtcaaaatg ctgaaaactc aaggactgag acaattggaa ataatcatcg
     5041 ggccatttaa gtcgtttggc aattcctact gaccctcccg tgattaaaaa tcttcgatct
     5101 gtatcgcgtt cgcgcgtttg gaagttaaac agatactgaa cggtatgaga gaaagaggtg
     5161 ctaaattgta tcggtcgctc tccacccagc catggttcca taatcgatag gctgtaggtc
     5221 gaataaaagg tactggcctg tgcacgcagc gaaaagcgct gaccatcacc catgggcagt
     5281 ggatgccatg aatctttatt gaatatattg cgcagagaaa agttattgaa ggacagccca
     5341 agggttccaa caaacccacc accaccgtaa cctccttgaa gttcgatttg actcgaccct
     5401 ttttcgatta cagaatattc caaatcgagt gttccgttgt tgggatctaa attcttgaaa
     5461 ttaggcgtca attgttctgc gtcaaaatag cctagctgcc ctaattcccg aacggttcga
     5521 atcacattgc gcttgctgta tttttcccca ggacgggtgc gcagctcacg ataaattacg
     5581 tggtcgttgg ttttgtcatt acccacgaca gtgacatggt caaagtaggt taatttattt
     5641 tccttaatgc gaatttcgaa atcaatggta tctccgcgca cggcaacctc tacgggatta
     5701 atctgcgaga aaagatagcc ttcattttga taaaggttcg ttaaatcggc agcgtcagga
     5761 tcgctattgt ctgcaatacg ctcttggagc aaggttccgt tataggtgtc ccctttggac
     5821 aaggccaaat attgttttaa aaactcattg gtgtatacac tgtttccgat aaagcgaatg
     5881 tccccgaagt aatacttttt accttcttca atggttaggt ctaaggcgat ggccttgtca
     5941 cttaaaaccc gcagcgtatc ttttagaata cgcgcatctc gatagccatt ctccttgtat
     6001 ttctgtatta aattcgcttt gtcctcttca aaaagagcct cggtatactt tgattttttc
     6061 caaacacgca gaannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnncag aagattttta
     6121 cgcttcacat ttttgagaaa acgacgtagt tttgcgtcgc ttaattcttt attgccttca
     6181 aagttaattt cagccacctt gacgcgctcc ccgcgatcaa ttaaaatacg catgtcttgc
     6241 gctatcgccg taccggttga atccaggacc ggtatggtgg tgatcatcac attagtgttg
     6301 agaaaaccat gttctgcgta cttattgatg atgtgattct tggtggtggt gatcaagttt
     6361 ttagtgatct tggtaccttc cttaagctca ttatcattaa tgatttcggt gcgctgtccc
     6421 tttctcactc catcaatgat caccttattc aacttgggca attctacgat gtatagttct
     6481 aaatcgacat cagtcccttc ggtatcggtg acgtagaacg caatgtcact gaatagattt
     6541 tgggcccata gtttttttgt aatgccgctg agtttctctc cggggatata aatttggtct
     6601 cccaccttaa gtccggtaaa ggcgataaca gtattttcgt tgaagttttg cgccccagta
     6661 actttaagac ttctaatggt gtatttggta ccgctatcga gctctttctt ctgggccaaa
     6721 atagaagggg accaaaataa gcaaagcccc acccaaagga ggagctgttt gactatattt
     6781 ttggcgtgct taggcgttaa gttgttcgct cgtctttcca aatcttcgtt ctctattttg
     6841 atagtctaat atagcgttat acaaatgagc ctttgtataa tcaggccaaa gtgtctctgt
     6901 aaaatgcaat tctgcgtagg ctatttgcca taacaaaaaa ttgctgattc tctgttcgcc
     6961 actcgtccta atcaataaat ctacatcggg taagtcccgg gtgtaaagat gattattaat
     7021 aatggtttcg ttaatatccg acggcgaaat taggttattt ttaactttga gactaatctc
     7081 ttgaatggtt tttgtgattt cttctcgcga accataactc aaggccaaag tcagggtcat
     7141 atggcgattt tctgatgtgc gctccatgac cgatttgagg tctttatggg ctttttcagg
     7201 gagggcgtct aaattgccga tcgcgttgag tcgaatccca tttttctgta gtgtgggcag
     7261 ttctttattt aaggctttaa caagcagttt catcagggcc tgaacttcga gttttggacg
     7321 tcgccaattt tcggtagaaa aggcgtataa agtcaaattg gggatattga gttctgcaca
     7381 agcttcgaca atttcacgta cggactctgc cccctgttca tggccaaaaa cccgaaattt
     7441 gccttggttt tttgcccaac ggccattgcc atccatnnnn nnnnnnnnnn nnnnnnnnnn
     7501 nnnnnnnnnn nnnnnnnnnn nnnngcccaa cggccattgc catccatgat aatggcaata
     7561 tgctgcggta atttatcttg gtcaatttta tgttgcgcgc ccattaaaaa ttgcaataac
     7621 atggtttacg cccaaaggcg taggtaaaag tcactcctgt aaacacgtac caatcattat
     7681 tggtggtgtc gccgaaaggt acattattta cctcggaatt accaacattg gcgctaccat
     7741 ctatagcatc cgtaaagcta tatctcgccc cgacttccaa acccactaaa aatttggttc
     7801 ctagtgtttt tttgagtcct aaaaccatgg gaatagcata agtggtctct cggccaacgg
     7861 gatcgaataa agtgccggtt ttgcgcagag catcatacca tgtgtacgtg aatcctgtat
     7921 acatataggg cgcaaaggcc ggagtgcctt catgcaaatc aaattcccaa aaggtatatt
     7981 cgatgccgag ggacacttca cttagggtat tttcaaagga ataaccgcgt tggagccttc
     8041 tggtatcctt cgagtctagg tcatcagcca ttatttgtgc cnnnnnnnnn nnnnnnnnnn
     8101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncggg tacttctgtt
     8221 ccatttggca ataccgccaa aagttgggcc cgcgggagca atgaattgag tgtctccaac
     8281 atcgccaatg taatttgcgc cgcccacaaa agcaccgatt tcataggttt gtgcgcgact
     8341 ctgggttgag acactcagtc ccaagataca gaacgtaaca ataaggttga atttgttgcg
     8401 catggccagt taaagggtgc aaatataaca attaactttt tgcctcattt tcctttggaa
     8461 ttgggcattg aataaacatt tattttaata aaatattgta ggccagcgaa gatttccacg
     8521 ctagagaaca ggatttaatt ggccctagtt ccgtttgtct tctccccagt agagtttgtc
     8581 gcgcaaggtc ttgatgaatg aagtctctgg aaggtggacc atttttaatc gaaacggcgc
     8641 cttttttata attatttctg agtcattggg tagagactca atgcgcgagt ctaaggacat
     8701 caaatgatgg gttgctcccg aagacacctt tagtttgacg gtacggtcat caggaataat
     8761 aagtgggcgc gcattaagat tgtgcggggc gatgggcgta atgagaagat ttgctgattc
     8821 tggatgtata atcgggccgc cacaactcag gctataacct gttgaccccg tgggtgtagc
     8881 gactatgagt ccatcgctcc aataggtatt aaggtgttct tggtcgaccc aaacatcaac
     8941 gcgaatcata gaagtagagt cctttcggtt tatcgaaact tcatttaacg caaaatttaa
     9001 atcttctgca ggactggtta acccctttgt ctcgacctct attagcgtgc gttcacttat
     9061 acgataggct ccagaaatta attgggtgag ttgatcggcg atcgcctctt ttggaatcgt
     9121 tgagagaaaa cctaatcggc ccgtattgat cccaacgaca ggaatattca tgtcgcgcac
     9181 gtaggtaact gctttgagca tggtgccgtc acccccaacg ctaataaaga agtccaagtg
     9241 ctcatctggt acatcaataa tttcgatgcg ctgggcatgg gccatggtga ttcgatgggt
     9301 tttgagcaaa tcccaaagtt ctctaatcat gcacacttta atgttctgag caaaaagtgt
     9361 atcgaggatg acctcaataa aatgttctga gcctttgtga taaaactgac caaatacggc
     9421 aacgcgtgtc atgataaagg ggtgatttaa atattgaggt atttatcaag atactcagag
     9481 cgctccttga gctgattcag ggtgctgtct ttttcatgca ctgaaataat atcaaagcca
     9541 tagcgtcgca gtgcctcgat gcaaattgtg atggtctcag acgacacttt tagggtcact
     9601 tgggtgaggt cattgttttg ttctgagata aaagcaccca atagatgccc gccgtttgac
     9661 tcgatgattt gggtgagttc ggccaaagaa tattcgttgg ttttccgccc cacaatcaaa
     9721 accacgcctt ctgcagacaa aaacggcgtg ctgtgaaata aatgcatgat atcgctcagc
     9781 tcatagtatc cttggtaaac gccttgggca tcgactacgg gcatgatgtt ggtttgatgt
     9841 tgtgcaaagg cttcaagtat ttcgaaccat gaattttgag cgcgcacaaa aaagggcgta
     9901 agggcatatt gcacatcact taaggtcgtg tttggatcca aacaaagcgc atcagtttca
     9961 gagagggccc ctaaa
//
LOCUS       DPUP01000217            3767 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7603,
            whole genome shotgun sequence.
ACCESSION   DPUP01000217 DPUP01000000
VERSION     DPUP01000217.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3767)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3767)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3767
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..910)
                     /locus_tag="DHV98_08330"
     CDS             complement(<1..910)
                     /locus_tag="DHV98_08330"
                     /inference="COORDINATES: protein motif:HMM:PF01551.20"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M23"
                     /protein_id="HCK06341.1"
                     /translation="MPINLTFSHRFILVSPMLLSRLSSVFCVFMFVLACSNTINAQAP
                     LGPQFASPLAGDLRLSGNFGELRSSHFHAGLDIKTNLTIGKPVYAAADGYVSRLKVAH
                     FGYGKALYLTHQDGFSSVYAHLDRFSPALQDYIKQTQYKKEQFQVELFPGKDQFVVRQ
                     GDLIGYTGNTGSSGGPHLHFEIRDPQSRPLNPLIYGIQIEDSKRPLPTALRWYPRSES
                     GLNLEGQAQNLSLTKVNDAEYLAETLETSGWIGFGLGVYDQQDGSVNKNGVYQIRCAL
                     NGSLVQEVLFDRISFDETKYMNRYMDY"
     gene            1032..1322
                     /locus_tag="DHV98_08335"
     CDS             1032..1322
                     /locus_tag="DHV98_08335"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06342.1"
                     /translation="MAQLNSIVDSLESKLNMLISAHKALKKDHQLQGDDLSNLVKENQ
                     ALRLELKQWKEMSEELKMANAMLGSDQYKRETKLKINALVRDIEQCIAHLAP"
     gene            1328..1618
                     /locus_tag="DHV98_08340"
     CDS             1328..1618
                     /locus_tag="DHV98_08340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HCK06343.1"
                     /translation="MAEALKIKLTIADRLYPLTIQAEQEEGLRKAAKRIEEMIKRFEQ
                     SYAVRDKQDVLAMCALQFAAQVEQKELDGSKDLVELEHRLQAIDQTVLEALK"
     gene            1669..1776
                     /gene="ssrS"
                     /locus_tag="DHV98_08345"
     ncRNA           1669..1776
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="DHV98_08345"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01685"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="flavobacterial type; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01685"
     gene            1826..3457
                     /locus_tag="DHV98_08350"
     CDS             1826..3457
                     /locus_tag="DHV98_08350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093161.1"
                     /note="protein from Staphylococcus aureus has
                     phosphodiesterase activity against 2'-3'-cAMP and
                     2'-3'-cGMP; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HCK06344.1"
                     /translation="MESYIPTIAASLIALIIGFVIAKIIEKNSASQVLNSAKRSAEGI
                     IKEAKTEAESLKKEKILQAKEKFIELKSEHEKVILSRDKKMAEAEKRIRDKESQVSNT
                     LAQQKKLNASLEKERAELEEKFKFIEKKEGEIERLHKSQIEQLEVISSLSAEDAKAQL
                     VESLKGEAKTDAMAYIQNSLEEAKMTAQQEAKKIIINTIQRIGTEEAVENCVSVFNLE
                     NDDVKGRIIGREGRNIRAIEAATGVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVT
                     DGRIHPARIEEVVKKTTQQIESEIIEVGKRTVIDLGIHGLHPELIKAIGRMKYRSSYG
                     QNLLHHSREVARLCGTMAAELGLNAKLAKRAXAKLSAVMASELGLNPKAAKRAGLLHD
                     IGKVPETESETPHAILGMQWAEKYGEKPEVCNAIGAHHDEIEMTSLLSPIVQVCDAIS
                     GARPGARRQVLDSYIQRLKDLEDIAFGFGGVEKAYAIQAGRELRVIVESEKVSDDKAA
                     QLSFEISQKIQTDMTYPGQVKVTVIRETRAVNIAK"
     gene            complement(3517..>3767)
                     /locus_tag="DHV98_08355"
     CDS             complement(3517..>3767)
                     /locus_tag="DHV98_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine recombinase XerD"
                     /protein_id="HCK06345.1"
                     /translation="TRAMVFTIIKDLAERAGIDKKVSPHTFRHSFATHLLENGADLRA
                     IQQMLGHESITTTEIYTHVETAHLAKVMKQFHPRKLKS"
BASE COUNT         1181 a          762 c          830 g          992 t
ORIGIN      
        1 ggtagtccat gtaccgattc atatatttgg tttcgtcaaa agatattcgg tcaaataaaa
       61 cctcttggac cagactccca ttgagtgcac aacgtatttg atatacgcca tttttattta
      121 ccgacccatc ttgttggtcg tataccccca aaccaaaacc aatccaacct gaagtctcta
      181 atgtttctgc taaatattca gcgtcattaa cctttgtcaa cgatagattt tgggcttgtc
      241 cttctaaatt caatcctgat tctgaccgcg ggtaccagcg caatgccgta ggtaagggtc
      301 tttttgagtc ttcaatctgt attccgtaga tcaagggatt taaaggacgc gactgaggat
      361 ctctaatttc aaagtgcaaa tgaggcccgc cgctactgcc cgtattgccc gtatagccga
      421 ttaaatcccc ttgtctcacc acaaattgat ctttaccggg aaataactca acctgaaatt
      481 gctctttttt atattgggtt tgcttgatgt aatcttgtag ggccggacta aatcgatcca
      541 aatgagcata aacactgcta aaaccgtctt gatgcgttaa ataaagtgct ttgccatagc
      601 caaaatgggc cacctttaaa cggctcacat agccatctgc agcggcataa acaggtttcc
      661 caatcgtcag atttgttttg atatccaggc cggcgtgaaa atgactgcta cgcagctccc
      721 caaaatttcc tgaaagacga agatcacccg ctaatgggga agcaaactgt ggccccaaag
      781 gagcttgcgc atttatggta ttcgaacaag ctagaacaaa cataaacaca caaaatactg
      841 agcttaagcg gcttaaaagc atcggagaaa ctaaaataaa gcgatgggaa aaagtcaaat
      901 taataggcat tgttaaacaa acgtgtgtgc acagacaaat attacaattt tttcgataat
      961 taacagatgc atgaaccctg catcggacaa gatttattaa ctttgtgttt aagtgttgta
     1021 atgttcattg aatggctcaa ctcaattcta ttgtcgattc gttagaatca aagctaaata
     1081 tgttgatttc tgcgcataag gcgttaaaaa aagatcatca actgcaggga gacgatctaa
     1141 gtaacttggt aaaagaaaac caagcgctta ggctcgagct caaacaatgg aaggaaatga
     1201 gtgaagaact taaaatggcc aatgcaatgc ttggcagcga ccaatacaaa agagaaacta
     1261 aactcaaaat aaacgctcta gtgcgcgata tagaacaatg tatcgcacat ttagcaccgt
     1321 agattaaatg gctgaggcac ttaaaataaa gttgaccatt gccgaccgtt tgtatccttt
     1381 aacgatacaa gcggagcagg aggagggcct tcgcaaggcc gccaaacgca ttgaagaaat
     1441 gatcaaacgc tttgagcaga gttatgctgt acgcgacaaa caagatgttt tggccatgtg
     1501 tgcccttcag tttgccgccc aagtagaaca aaaagagctc gatggttcaa aggatttggt
     1561 ggaattagaa caccgtctcc aagcgataga tcaaacggta ctagaggcac taaagtgacg
     1621 ttcttaaaat attcaggtaa ctgcctatat tgatatatta tttggtaaac tcaacagaga
     1681 ttctttaaaa gaggtgagtt agtgttgtta aagcatgccg tcctagtcac ggatccttga
     1741 tcaacatatt agcctcaaac gtgttttaag gagtttattc aatacactta tcggtatagg
     1801 ctttttttat actcagtgtt caattatgga atcatatatc cccacaattg cggcctcatt
     1861 aattgcctta atcataggct ttgtgatcgc aaaaattatc gaaaaaaaca gcgcttctca
     1921 agtgctaaat tctgcaaaac gttcggcaga aggcattatt aaagaagcca aaaccgaggc
     1981 agagtctctt aaaaaagaaa aaatacttca agcaaaagaa aagttcatag aacttaagtc
     2041 agagcatgaa aaagttattt taagtcgtga caaaaaaatg gctgaagctg aaaagcgaat
     2101 aagagataaa gaatcacagg tctcaaacac cttagcccag caaaaaaagc taaacgcctc
     2161 acttgaaaaa gaacgagcgg aactcgagga gaagttcaaa tttatcgaaa agaaagaggg
     2221 tgagattgaa cgattgcaca aaagccaaat agaacaactt gaagtcattt cgagtttatc
     2281 ggcagaagat gcgaaggcac agctggtcga aagcctaaaa ggcgaagcca agaccgatgc
     2341 catggcctat attcaaaaca gtcttgaaga ggccaaaatg accgcacaac aagaggccaa
     2401 gaaaatcatc atcaatacca tacaacgtat tgggaccgag gaggctgttg aaaattgtgt
     2461 ctctgtattt aatttagaga acgatgacgt caaagggcgg atcatcggac gtgaagggcg
     2521 taatatccgt gctattgaag cggcgactgg ggttgaaatt atcgtagatg acactccgga
     2581 ggccatcatc ctttcttgct tcgattctgt gcgtcgtgag attgcccgac tttctttaca
     2641 taagctcgtt actgatggcc gtattcatcc ggcgcgcatt gaggaagtcg ttaaaaaaac
     2701 cacccaacaa atcgagtcgg aaattattga agtaggcaaa cggacggtaa ttgacctagg
     2761 gattcatggg ctgcatcctg agctgattaa ggccattggg cgtatgaaat atcgctcatc
     2821 atacggtcag aatttattac accattcgag agaagtggcc cgactatgtg ggactatggc
     2881 tgcagagctc ggtttaaacg caaaattagc caaaagggcc nntgcaaagc tttctgccgt
     2941 tatggcttct gagttgggat taaacccaaa ggctgccaag cgcgcgggtc ttttgcatga
     3001 tattggaaaa gttccagaaa ctgagtctga gacgccacac gccattcttg gcatgcagtg
     3061 ggctgaaaaa tatggagaaa agcccgaagt gtgtaacgct attggcgcgc accatgatga
     3121 aattgaaatg acgagtctgt tatccccaat tgtgcaggtt tgcgatgcca tcagtggtgc
     3181 tcgtccggga gccagacgac aagttttaga ctcctatatt cagcgtctta aagacctcga
     3241 agatattgcc tttggttttg gtggggtgga gaaagcctat gctattcaag ccggtcgcga
     3301 attacgcgtt attgtcgaga gtgaaaaagt cagtgatgat aaagcagcgc aattatcttt
     3361 tgaaatctcc caaaagatcc agaccgatat gacctatccg ggacaggtta aagtgactgt
     3421 tattcgagaa acccgcgctg tgaatatcgc caaataagtc cgcgctgagc cctaatttgt
     3481 ttcattctcg acttttcgtt tttacgcgtg ttgaatttaa gattttaatt ttctggggtg
     3541 aaattgtttc atgacttttg caagatgggc tgtttccaca tgggtataaa tctcagttgt
     3601 cgtaatgctt tcatgtccga gcatttgttg aatcgctctt aagtctgctc cattctccag
     3661 taagtgtgtg gcaaaagaat gacgaaaggt atgggggctt acttttttat caattccagc
     3721 gcgctcagcc aagtctttaa taatggtaaa caccattgcg cgtgtga
//
LOCUS       DPUP01000218            8088 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15623,
            whole genome shotgun sequence.
ACCESSION   DPUP01000218 DPUP01000000
VERSION     DPUP01000218.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8088)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8088)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8088
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1504
                     /locus_tag="DHV98_08360"
     CDS             <1..1504
                     /locus_tag="DHV98_08360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HCK06346.1"
                     /translation="DAFEGPMPQTRFVLQKAIALGKKPCVVVNKVDKENCTPDEVHES
                     VFDLMFDLGAEEWQLDFPTVYGSAKQNWMSSDWKKPTDSIEPLLDMVLEHIPSPKIET
                     GTPQMLITSLDYSSFTGRIAIGRLQRGTLSESMNVSLIKRDGSIVKSRIKELFTFEGL
                     GRKKVSEVSAGDICAVVGLEGFEIGDCIGDIEQPEALATIAIDEPTMSMLFTINDSPF
                     FGKDGKFVTSRHIKERLNRELEKNLALRVKETDSADKFMVFGRGVLHLSVLIETMRRE
                     GYELQIGQPQVIIKQIDGVSCEPVEELTIDLPEEVSGRAIDMVTIRKGEMQSMEAKGD
                     RMVCAFLIPSRGIIGLRNQLLTATAGEAIMTHRFLEYQPMKGGIPERQNGSMVSMENG
                     TAIPYSIDKLQERGRFFVDPGEEIYEGQVIGENSRQDDMAINVTKTKKLSNVRSSGAD
                     DKARIVPAIKFSLEEALEYIQKDEYVEVTPNHLRLRKIMLKEVDRKRSKA"
     assembly_gap    1665..1774
                     /estimated_length=110
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1913..>2819
                     /locus_tag="DHV98_08365"
     CDS             1913..>2819
                     /locus_tag="DHV98_08365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="nodulation protein NoeA"
                     /protein_id="HCK06347.1"
                     /translation="MKSKAHRHQASFRDPSGYIVRDGSVVKRVINPIYFPVYDALCKA
                     DFFSPLFKAKMLIPHVEQERSAEAIVLMPDQIDLMTYPYEWSFEQYKQAALLTLKLQN
                     FALDRDFSLKDASAYNVTFHRGKPVFIDTLSFDFYQKDSPWRAYKQFITHFFGPLVLA
                     HFHGAEALKMMQTHIDGIPVALVASMLPKRTKLSPTLYTNIHLMAKMEAKHKDEYTPK
                     SRSIKLSKQSLRNLLRSLYNYIDQLELMQQTEWGDYYNKTNYQPESFIFKKEQIQKWI
                     AGNGARKILDLGGNDGTFARAIDSDI"
     assembly_gap    2820..3044
                     /estimated_length=225
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3045..3528
                     /locus_tag="DHV98_08370"
     CDS             <3045..3528
                     /locus_tag="DHV98_08370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="nodulation protein NoeA"
                     /protein_id="HCK06348.1"
                     /translation="IDLAVVADVDHNAVALNYAQVKANKEVNMLPLWFDVTQPSPAIG
                     WVNLERESILNRLSAWGPEAVLALAVIHHMTLSANIPFADSAQFFARLSPLLVIEFPK
                     RDDSWVDSLLQRKREFINHFDHYHQENFEKAFEEHFKILEKVNIPGSDRILYLMHSRQ
                     "
     gene            3536..5011
                     /locus_tag="DHV98_08375"
     CDS             3536..5011
                     /locus_tag="DHV98_08375"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06349.1"
                     /translation="MSPFMNDINKQPLKTWMVVLCAGIYPVLFYVGNNYSLVNSWGHV
                     VFFTLSFFILPLIGAELGARLLKKKLGLRWAELWLSFLGFGLFFFFFKVTLLEAPHRK
                     ITVLIIFLALIYAYFLSKHHRKLMVLQGLMGLLALFPLIGQIYHNLSLSESWKEIQKE
                     VLNLELKVKPNIYLIQPDGLVNFSEMNRGYYQDQDTTFKSELNQLGFTHYPDFRSNYA
                     STLSSNSALMMMKHHYYNFGENFSEALDARECIVSKNHVLTILKNNGYQSNLISQAPY
                     LLVNHPKLGFDRTNFDFDDIGYLSKGFNLKANITNDLDQFLEEAPVGPQFYFIEFFNP
                     GHIAGRRENSLGAHKERDLWLESMERGQVTIRDLVRLIQHRDPEGLIILLADHGGFVG
                     LDYTNQIYTKTQDRDLIYSIFSSRLSIKWPKDLKPEQPINFTTSVNIFRLLLAHLSQN
                     QSIGLDLESDASYVILNDEQYKGVYEYIDTHGAVNCKKVEQ"
     gene            5008..5979
                     /locus_tag="DHV98_08380"
     CDS             5008..5979
                     /locus_tag="DHV98_08380"
                     /inference="COORDINATES: protein motif:HMM:PF13480.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HCK06350.1"
                     /translation="MIEVVRYDTTRTSEWDAFVSKSKNGTFILCRGFMDYHKDRFSDH
                     SLMIYYNDKLLAVVPAHEQNQILYAHQGLTYGGVVWHKKVKFVQAFECFKAVLFYAHR
                     HDFVRLNLKEIPRIYAQLPCDELDYFLALAQAKCIKKDVALVIDYDHVLGFEKNRREG
                     LNKARRHELKVVCDDNFEAFWNTILIPELSQKHKAKPVHSLEEIKLLASRFPDNIKQV
                     SVYNGDKLVAGTTVFLTPTVVHPQYVMGDPDKNKLGSIDLAYDFIIKEFASGRRYFDF
                     NTSSENHGTLLNSGLLFWKESCGARCITVNQYEIETKNHKNINLNLR"
     gene            5976..7082
                     /locus_tag="DHV98_08385"
     CDS             5976..7082
                     /locus_tag="DHV98_08385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HCK06351.1"
                     /translation="MIPYLDLHKINDRHRADFESAFKVFMDRGQNILGEAVTDFESQF
                     AQYCGVKFCVGVGNGLDALRLIFEAYKVIGKLKPGDKVLVCAHTYVATVLSVKQAGLT
                     PVLIDATEDTFNFDLKALNELNDPDIKAILPTHLYGALAPMNEISALANTRNWLVIED
                     AAQAHGAKNQHNSRAGHLGDAAGFSFYPTKNLGALGDAGAVTTDDAQLAEVIRCLRNY
                     GSQQRYYNKFSGFNSRLDELQAAFLTIKLPQLDQDNARRVHIAMRYDAEIINPHIRLP
                     LGRYHGDHVYHLYVVRTGYREKLERHLQRQGIGTLIHYPVPPHKQEGLTELGLERHPI
                     AEQLHDTVLSIPMSPVLTEEEVDQVIAGLNSFTP"
     gene            7079..>8088
                     /locus_tag="DHV98_08390"
     CDS             7079..>8088
                     /locus_tag="DHV98_08390"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen flippase"
                     /protein_id="HCK06352.1"
                     /translation="MKIIDFIKGNTLLKMTSLNAPVILVRQFISLFIRRVIAENFGES
                     GIFLQGQLRSLIQLLTSFTSLGIFNGIVKYISEFKEDKKQLAALFSTTFVFTVLGSVI
                     SSVVLLLWHDSLSTYLFGSDRYAYLIQLIALLVPTISLQRVFNGVINGLSQYKKFAKI
                     DLLSYLLSSALIIGFLYADNFDGVLIAIAITPAIQLGTLLWVFTKVLTQYLKFKDLYF
                     KAPLAKFFVAFSLMSFFSTVILSTVEIEIRNMILRRISESDAGIWSAMLDLSKNYMAF
                     STILFTMYVIPKFALVVGRRSFVRELGHVYKTILPIFGLGMIGVYIFRDFIIALIFPG
                     FDA"
BASE COUNT         2175 a         1478 c         1740 g         2360 t
ORIGIN      
        1 cgatgccttt gaaggcccca tgcctcaaac gcgttttgtg ttgcaaaaag caatcgcact
       61 gggtaaaaaa ccttgtgttg ttgtcaataa agtggataaa gaaaactgta ctccagacga
      121 ggttcatgaa tctgtttttg atttaatgtt tgatttgggt gctgaagaat ggcagctaga
      181 cttcccgaca gtttatggct cggcgaaaca aaattggatg agttcggatt ggaaaaaacc
      241 gacagactct attgaaccat tgttagacat ggtccttgaa catattcctt cacctaaaat
      301 cgagactggg accccacaaa tgcttattac ttccttggat tattcatcct ttacagggcg
      361 tatcgctatt ggtcgtcttc agcgcggtac tttaagcgag tcgatgaatg tttcgcttat
      421 caagcgtgat ggatctattg ttaaaagtcg tattaaagag ttgtttactt ttgaaggctt
      481 gggtcgtaaa aaagtaagtg aagtaagtgc tggtgatatt tgtgccgtgg taggacttga
      541 aggttttgaa attggggatt gtatcggtga tatcgaacag ccagaggccc tggcaactat
      601 tgctattgac gagccgacca tgagtatgtt gtttaccatt aatgactctc ctttttttgg
      661 aaaagacggt aaattcgtga cctcacgaca cattaaagaa cgtcttaatc gcgaacttga
      721 aaaaaatctt gcgcttaggg tgaaagaaac agatagcgcg gataaattca tggttttcgg
      781 tcgtggagtc ttgcatttgt ctgtgttgat tgaaacgatg cgacgcgagg gttatgaact
      841 tcaaattgga caacctcaag ttattattaa gcaaattgac ggggtctcat gtgaacctgt
      901 tgaagagttg accattgatt tacccgaaga agttagcgga cgcgccattg acatggttac
      961 cattcgtaaa ggggaaatgc aaagtatgga agccaaaggc gaccgcatgg tgtgtgcttt
     1021 tttgattccg tctcgaggga ttataggact aagaaatcaa ttgttaacgg ccactgctgg
     1081 tgaagccatc atgacccacc gattcttgga atatcaaccc atgaaagggg gcattccaga
     1141 gcgtcaaaat ggaagtatgg tatccatgga aaacgggacg gcaattcctt attctatcga
     1201 taaacttcaa gagcgagggc gattctttgt cgatccagga gaggagatct acgaaggtca
     1261 agttatcggc gaaaattcac gacaagacga tatggccatt aatgttacca agaccaaaaa
     1321 attgagtaac gtgcgctctt caggagccga tgataaggca cgaattgttc ctgcaattaa
     1381 gttttccctt gaagaggctt tggaatacat tcaaaaagat gaatatgttg aggtgacccc
     1441 aaatcatttg cgtctacgta aaataatgct caaggaagtg gaccgtaaac gttccaaagc
     1501 ttaatcccga attcaagagt gactaaggcc gttaatccga aagtttaggg gcaattcagg
     1561 gattaagtgc cgcattttta tttaatttgt gggaaaggac caataaaagt gatgatgggc
     1621 tatttttcaa tgatgtttct ttactttgat gcaggcttgg gggcnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnccatag tcgccgccgc tgccggtatc
     1801 gttttgtttt caaaaaactt tatgtacaag gtgaaatcgt tttttggtct gaccaagtct
     1861 caaaaagatg gaattgatac catcgatttt gagcaggacg aaaaacaacc caatgaagag
     1921 caaggctcat agacatcaag cctctttccg agacccttct ggatatattg ttcgagatgg
     1981 atcagtggtc aagagagtga ttaatcccat ttactttcca gtctacgatg ccctgtgtaa
     2041 ggccgatttt ttttcgcctt tattcaaggc caagatgctc ataccgcatg tagagcagga
     2101 gcgttcagca gaggcaatag tattgatgcc agatcagatt gatctgatga cctatcccta
     2161 tgaatggagt tttgagcaat acaagcaggc ggctttattg actttaaaac tgcaaaattt
     2221 cgctttagat cgcgattttt cactcaagga tgcctcggct tataacgtta cttttcatcg
     2281 tgggaagccg gtatttatcg ataccttatc ctttgacttt tatcagaagg acagcccgtg
     2341 gcgcgcctat aaacaattta ttacgcattt ttttggcccc ttagttttag cccattttca
     2401 tggagcagag gcattaaaga tgatgcaaac ccatatcgat ggaattcctg tggcgctggt
     2461 cgcctccatg ttgccaaaac gaacaaagct gagtccaacg ctatacacca atattcatct
     2521 gatggccaaa atggaggcca aacacaaaga tgaatacacg cctaagtcac gaagcattaa
     2581 actctcaaaa cagagtttac gaaatttgtt gcgttcactc tataattata ttgatcagct
     2641 tgagctgatg cagcaaaccg agtggggtga ttattacaat aaaaccaatt accaacccga
     2701 gtcatttatc tttaaaaagg agcaaatcca aaaatggatt gccggaaatg gtgctcgaaa
     2761 aatattagat ctgggcggga atgatgggac gttcgcccga gcgatagatt ccgacattgn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncattga tttagcggtt
     3061 gtggccgatg ttgatcacaa tgcggtggcc ttaaattatg cccaagttaa ggccaacaaa
     3121 gaagtcaata tgttgccgct ttggtttgat gtgactcagc caagtcctgc aataggttgg
     3181 gtaaatctag agcgtgagtc catactcaat cgattatccg cttggggccc cgaggctgtt
     3241 ctggctttgg cggttattca tcatatgacc ttatcggcaa acattccgtt tgctgattct
     3301 gctcaatttt ttgcccgctt atcgccatta ttggtgattg agttcccgaa acgcgatgat
     3361 agctgggtcg attcattatt gcaacgcaaa agagagttta tcaatcattt tgaccattat
     3421 catcaagaga attttgaaaa ggcttttgag gaacatttca agattttaga aaaggtaaat
     3481 atacccggaa gtgaccgtat actttatcta atgcattcgc gacaataagc gccttatgtc
     3541 cccatttatg aatgatatca ataaacaacc gctaaagact tggatggtgg tattatgcgc
     3601 cgggatttat cccgttttgt tttatgtggg taataattat agcttggtga actcatgggg
     3661 gcatgttgtg ttttttactt taagtttttt tatccttccc ctgataggcg ctgagctcgg
     3721 cgctcgacta ctgaaaaaaa aacttggttt acgctgggct gaactttggt tgtctttttt
     3781 ggggttcggt ctatttttct tcttttttaa ggtaacactc ctcgaggcac ctcaccgtaa
     3841 aattactgtg ttaattatct ttttggcgct gatttacgcc tattttctca gtaaacatca
     3901 ccgcaagttg atggtcctcc agggattaat ggggcttttg gctttatttc cactcatcgg
     3961 tcagatttat cacaatttga gtttatccga atcatggaag gaaattcaaa aagaggtcct
     4021 gaatttagaa ttaaaggtca agcccaatat ttatttgata cagcctgatg gcttagtcaa
     4081 ttttagtgag atgaacagag ggtattatca ggatcaagac accactttta aatcagaact
     4141 caaccagttg ggttttaccc attaccctga ttttcgcagt aactacgctt ctacattgtc
     4201 gtctaacagt gccttgatga tgatgaagca tcattattac aattttggag aaaattttag
     4261 tgaagccttg gacgcacgtg agtgtatcgt gtcaaaaaat catgtgttga cgattttgaa
     4321 aaacaacggt taccaaagta atttgatttc gcaggcccct tatttgttgg tgaaccatcc
     4381 aaaactcggt tttgaccgga ccaactttga tttcgacgat atcggttacc tgagcaaagg
     4441 atttaactta aaggccaata tcaccaacga tttggatcaa tttttagaag aagcacctgt
     4501 tgggccacaa ttttatttca ttgagttttt caacccagga catattgccg gacggagaga
     4561 aaattcgctt ggagcccata aagaaaggga cttatggcta gaaagtatgg agcggggaca
     4621 ggtaacaata agggatctag tcaggctcat tcagcatcgt gatccagagg gtttaataat
     4681 tctcttagcc gatcacggtg ggtttgtagg ccttgactat accaatcaaa tctacaccaa
     4741 aacacaggat cgagatttaa tttattctat ctttagcagt cggttgtcta taaaatggcc
     4801 gaaagatttg aaaccagaac aaccgatcaa ttttacaaca tcggtcaata tctttcgttt
     4861 gctattggca catttgagtc aaaaccaatc cattggccta gacttggaat ctgatgccag
     4921 ttatgttatt ttaaatgatg agcagtacaa aggagtctat gaatatatcg atacccatgg
     4981 tgccgtcaat tgtaaaaaag ttgagcaatg attgaggttg ttcgatacga taccacgcgc
     5041 acttctgagt gggatgcctt tgtctcaaaa agcaaaaatg gcacgtttat cctttgcagg
     5101 gggtttatgg actaccataa agatcgattt tcggaccact ctttaatgat ttattataat
     5161 gacaaacttc tggccgtggt gcctgctcat gaacaaaacc aaatcttata cgcccatcaa
     5221 ggattgactt atgggggggt tgtttggcat aaaaaagtaa aatttgtcca ggcctttgaa
     5281 tgctttaaag cggttttatt ttatgcgcat aggcatgatt ttgttcgctt gaatttaaaa
     5341 gaaattccaa ggatttatgc gcagctgccc tgtgatgagc tcgattattt tttagcgctg
     5401 gctcaagcca agtgcattaa aaaggacgtt gctttggtga ttgattacga tcatgtttta
     5461 ggttttgaaa aaaacagaag agaaggactc aataaagcac gaagacatga gttaaaagtg
     5521 gtctgtgacg ataattttga ggcgttttgg aacacgattc tcattcccga actttctcaa
     5581 aaacacaagg caaaaccggt tcactcatta gaagaaatta agctattggc ctcccgattt
     5641 cctgataaca ttaagcaggt ttcggtgtat aatggagata aacttgtcgc cgggacgacc
     5701 gtctttttga ccccgactgt agtccatcct caatatgtga tgggtgatcc tgacaagaac
     5761 aagctgggca gtattgactt agcctacgat tttatcatca aagaatttgc ctcaggacga
     5821 cgctattttg attttaacac ctcgagtgaa aatcatggaa cccttctcaa ctcaggactt
     5881 ttattttgga aagagtcttg tggcgcacgt tgtataacgg tcaatcaata cgaaatcgaa
     5941 acaaagaatc ataaaaatat taatctcaat ctaagatgat tccttacttg gatttacata
     6001 aaataaatga ccggcataga gcagattttg agtccgcttt taaggtattt atggatcgag
     6061 gtcaaaatat attgggggag gctgtaactg attttgaatc acaatttgcc cagtattgcg
     6121 gcgtgaaatt ttgtgtgggg gtaggcaatg gtttagatgc cttacgctta atttttgagg
     6181 cctataaagt cattgggaaa ctcaaacctg gcgataaagt gttggtctgt gcccatacct
     6241 atgtggctac cgtattgtcg gtaaaacagg ctggactcac ccctgtgtta atcgatgcca
     6301 cagaggatac ttttaatttc gatttgaagg cattaaatga attaaacgat ccggatatta
     6361 aagccatatt gcccacacat ttgtatggcg ctttagcccc gatgaatgag attagtgcgt
     6421 tagccaatac gcgaaattgg ttggttattg aggatgcggc tcaggcccat ggggccaaaa
     6481 atcagcacaa tagtcgtgcg ggccatttag gagatgctgc aggatttagc ttttatccca
     6541 ctaaaaatct aggggccttg ggcgatgctg gggcggtgac tacagatgat gcccaattgg
     6601 cggaggttat tcgttgtttg cgcaattatg ggtcacagca gcggtattat aacaaattta
     6661 gcggctttaa ttccaggctc gacgaattac aagcagcctt tctgacaatt aagttgcccc
     6721 aacttgatca agataatgcg cgtagagtgc atattgccat gcgttatgat gctgagatta
     6781 taaatccgca tataaggtta cctcttggtc gctaccatgg ggatcatgtc taccatttat
     6841 atgtggtgcg aaccgggtat cgagaaaaat tagaaagaca tttgcagcgc caaggtatcg
     6901 ggaccttgat acactatcct gtaccaccgc ataaacaaga aggcttaact gaactgggcc
     6961 ttgaacgcca tccaatagct gaacagctgc acgatacggt cttgagtatt cccatgagtc
     7021 ccgttctaac cgaggaagaa gtggatcagg taattgcggg cttaaattct tttacgcctt
     7081 gaaaatcatc gactttataa agggcaatac cctgcttaaa atgacatcgc ttaatgcgcc
     7141 agtaattttg gtgcgtcaat ttatttcact gtttattcgt cgggttattg ctgagaattt
     7201 tggggagtct ggtattttct tgcaaggaca attacggagt ttaatccagt tgctgacttc
     7261 gtttacctcg ttggggattt tcaacggaat tgtgaaatac atttctgagt tcaaagagga
     7321 taagaaacaa ttggcagccc ttttttcgac gacatttgtt tttaccgtcc ttggaagcgt
     7381 catcagttcg gtagtgctgc ttttgtggca cgattcgctc agtacttatt tgttcggtag
     7441 tgatcgatat gcttatctca ttcaactcat cgcccttttg gttcccacga taagtcttca
     7501 aagggtcttt aatggagtga ttaacggact ctctcagtat aaaaaatttg ccaaaataga
     7561 tttgttgagt tatttgctca gctcggcctt gattatcggc tttttgtacg ccgataattt
     7621 tgatggcgtt ttgattgcta tcgcgattac ccctgcgata caattaggga ctttactgtg
     7681 ggtttttacc aaagtattga cccaatacct taagttcaaa gacctttatt ttaaagcccc
     7741 attggccaag ttttttgttg ccttttcgct catgtcgttt ttctctacgg tcattttgag
     7801 tactgttgag attgaaatcc gtaatatgat tttaagacgg atttctgaaa gtgatgcagg
     7861 gatctggtcg gcaatgttgg atttgtccaa gaattacatg gctttttcaa ccatcttatt
     7921 taccatgtac gtcatcccca agtttgccct tgttgtgggg cggcgttctt ttgtccgtga
     7981 actgggtcat gtatacaaaa cgatactgcc catttttggt ttaggaatga tcggggttta
     8041 tatctttaga gactttatta ttgcgctaat ttttccgggg tttgatgc
//
LOCUS       DPUP01000219            5284 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2997,
            whole genome shotgun sequence.
ACCESSION   DPUP01000219 DPUP01000000
VERSION     DPUP01000219.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5284)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5284)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5284
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1512)
                     /locus_tag="DHV98_08395"
     CDS             complement(<1..1512)
                     /locus_tag="DHV98_08395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HCK06353.1"
                     /translation="MKQYLFSAVLLGLLTLTSCGDQTTPQQETSLENNVDQFADVKVL
                     RYQIPGFEDLTLNEQKLVYFMTQAGLEGRDIMWAQNYRHNLEIRKALERIYVDFPGER
                     NNEQWMAFETYLKRVWFSNGIHHHYSNDKIMPEFPAKYLQELLIASGATLEGEAFEVI
                     FNDKDNKKVNLSKDADIVLESAINFYGPDVTAQDVEDYYGLVSVDPERPIEIGLNTRL
                     VKQDGALVEQVYRSGGLYGEAIDRIIYWLEQAVTVAENPAQAKALNLLIEYYKTGDLH
                     TWDEYAVAWVNATEGNIDWINGFIEVYNDPKGYKGSYETIVQIKDFDMSKKMSVLSEQ
                     AQWFEDNSPLMPEHKKKEVKGVSYKTVVVAGESGDASPSTPIGVNLPNNNWIRQAHGS
                     KSVSLGNIINAYNNAGGSGRLQEFAHDAEEVELEEKYGTLADKLHTALHEVVGHASGQ
                     INPGVGTPKETLKSYKSTIEEGRADLFGLYYLMDPKLQELGLVTDWEATGKAAY"
     gene            1717..2082
                     /gene="crcB"
                     /locus_tag="DHV98_08400"
     CDS             1717..2082
                     /gene="crcB"
                     /locus_tag="DHV98_08400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HCK06354.1"
                     /translation="MKNIVLVFLGGGLGSALRYGLSSWLNQFYPWAVGTFSANILGSL
                     LIGLLMGWFIKWPHFEADLRLLLAIGFCGGFTTFSALALEQVNMIKNGATMHALVYMA
                     STLILGVAAVFLGLWLSRQ"
     gene            complement(2134..2775)
                     /locus_tag="DHV98_08405"
     CDS             complement(2134..2775)
                     /locus_tag="DHV98_08405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06355.1"
                     /translation="MKSFYTTLFSYYTTLLFLSFLGLHAPVNGQNKERIVQEIQNYQD
                     VVDREFADPEQSILKPEDLSQFKGLNWYPINLDYRVTARLESTPNATPFLMPTTTERR
                     PEYVQYGILYFTLNNQELQLPVYRSAQGDDDPQYADYLFCPFTDWASGDGAYGGGRYI
                     DLRIPEGDRIILDFNKSYNPYCAYNERYSCPIPPKENDLPVRIEAGIKAFKEY"
     gene            complement(2772..3209)
                     /locus_tag="DHV98_08410"
     CDS             complement(2772..3209)
                     /locus_tag="DHV98_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013749537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HCK06356.1"
                     /translation="MDLLNRRILQCLQTNARYSHAEIGRIVGISSPAVNERIKKMEDA
                     GIIKGYRTEVSSFECGYQLRAIITVRAFMGKLKPFLEQVKSFPEVVNCYRITGNENIV
                     MEVVLINQKHLEQFIDKLILFGETKTQIILSKVVDHHPIVPQL"
     gene            3359..3754
                     /locus_tag="DHV98_08415"
     CDS             3359..3754
                     /locus_tag="DHV98_08415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06357.1"
                     /translation="MKKKMSHRLHYPPLYYKALDILTLSRHMSYLYTEDLIGPELHGP
                     EHKEIYFTGDIIQQSCSLVPEILRAENQPYAEDKRRYAKRVKLLTKKLFYTCDRLEKS
                     PVQSKEFLPLFRKELRQFRKLQRTWALML"
     gene            complement(3763..>5284)
                     /locus_tag="DHV98_08420"
     CDS             complement(3763..>5284)
                     /locus_tag="DHV98_08420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HCK06358.1"
                     /translation="TLYGHDPDLRPDIYGKIGNAGVSVCCLDDAKKLYSGFNLSDPMT
                     SVSMTINGPAPMVLAFFLNAAIDQNCEKYLKEHQLEGEVAKALARHYPDKALRPKYHG
                     ELPKGHNGLGLLLLGITGDQVLPTEVYNKIKAQTLTQVRGTVQADILKEDQAQNTCIF
                     STEFALRLMGDVQQYFIEQKVRNFYSVSISGYHIAEAGANPITQLAFTLSNGFTYVEY
                     YLSRGMSIDDFGPNLSFFFSNGIDPEYAVIGRVARKIWAKAMREKYGAGPRSQMLKYH
                     IQTSGRSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEDSVRRAMAI
                     QLIINKELGLAKNENPIQGAFIIEELTDLVEQAVLIEFDRITERGGVLGAMETMYQRG
                     KIQEESLHYETLKHTGEFPIIGVNTFLSSKGSPTIIPSEVIRATEQEKQLQINTVRAL
                     HANRDAQLKGALAALTVAAKNNENLFAVLMQAVKVASLGQITRVLFDVGGQYRRNM"
BASE COUNT         1420 a         1209 c         1067 g         1588 t
ORIGIN      
        1 ataggctgct tttccagtag cctcccaatc cgtaaccaaa ccgagttctt gtaattttgg
       61 atccataaga taataaagtc caaacaagtc agcacgacct tcctcgattg ttgatttata
      121 gctcttgagc gtttcctttg gggtgcccac tccagggttt atttgtcccg aagcatgacc
      181 cacaacctcg tgtaaggcgg tgtgtaattt atcggccaat gtcccgtatt tctcctctaa
      241 ttcgacctcc tctgcatcat gagcaaattc ttgtaaacga ccgctgcctc ctgcattgtt
      301 gtaggcatta atgatgtttc ctagagagac cgacttactt ccatgggctt gtctgatcca
      361 gttattgttc ggtagattaa cgccgatggg cgtgctcgga gacgcatcac cagattctcc
      421 ggccacgacc acagtcttgt acgaaacccc tttaacctct tttttcttat gttcaggcat
      481 cagcggtgaa ttatcctcaa accattgtgc ctgctcagaa agcacactca tttttttgga
      541 catatcaaag tctttgatct gtacaatagt ttcataggaa cccttataac cttttggatc
      601 gttatacact tcgataaaac cgttgatcca atctatattt ccttcagtgg cattaaccca
      661 tgctacggca tattcatccc aagtatgcaa atcccccgtt ttataatatt caataagaag
      721 gttcaatgcc ttagcctgag ctggattctc tgccacggtt accgcctgct ccaaccagta
      781 aatgattcga tctatggctt ccccatagag tccgccgctg cgataaactt gttctactag
      841 agcgccatct tgttttacta atcgggtgtt aagtccaatt tcaattggac gttccggatc
      901 tacacttact aacccgtaat aatcctctac atcttgagca gtcacatcgg ggccgtaaaa
      961 attaatcgca ctttctaaaa caatatcggc gtctttactc agattaacct ttttgttgtc
     1021 tttatcgtta aaaatcacct caaaggcctc cccttccaag gtcgctccag atgcaatcag
     1081 caattcttgt aaatattttg ctgggaattc aggcatgatt ttgtcgttgc tgtaatggtg
     1141 atgaatccca tttgaaaacc agacgcgctt tagataggtc tcgaaggcca tccactgctc
     1201 attattgcgt tctccaggaa aatcaacata tattctttct aatgccttgc gaatttcaag
     1261 attgtgtctg taattctgcg cccacatgat atcgcgccct tcgagtccgg cttgagtcat
     1321 aaaatagacc aacttctgct catttaacgt caaatcttcg aaacctggaa tctggtaacg
     1381 cagaactttt acgtctgcaa attgatccac attattttca aggcttgttt cttgttgcgg
     1441 agtggtttga tcgccacagc tggttaaggt caataatccg agcaatacgg cactaaaaag
     1501 atattgtttc atttttggtg atttttgaag cctaaaggta gttaaatttt gattttattt
     1561 taaggctcaa agttttgatt cgcaagtcaa tcttctcaaa aaacagagcg atcatggcta
     1621 aaggttggcc agggccgctc cactgctcag acaaattagt tatcttagct cgatatccta
     1681 aaggaaggtc aactgcttta gaacgttgaa ttcatgatta aaaatattgt cttagtgttc
     1741 cttggaggtg gattaggcag tgcccttcgc tatgggctca gtagctggct taatcaattt
     1801 tatccttggg cagtcggaac ctttagtgcc aatattctcg ggagtctact cattgggctt
     1861 ttgatgggtt ggtttatcaa atggccccac tttgaagccg atctgcgcct gcttctggcc
     1921 ataggattct gcggcggatt taccaccttt agcgctctgg ctttagaaca agtcaatatg
     1981 ataaaaaatg gagccaccat gcatgccctg gtttatatgg cttcaaccct gatattgggc
     2041 gtcgctgcgg tcttcttagg cctttggctc agccgacaat aaacgtatcc gccggacagg
     2101 ccacccaatt attattcggg actaaataca cgtttagtat tccttaaagg ctttaatccc
     2161 tgcttctatg cgcacgggta agtcattttc tttgggtgga atgggacaag aataacgctc
     2221 attgtacgcg caatagggat tgtaggattt gttaaaatct aaaatgatac gatccccttc
     2281 tggaatacgc aaatcgatat aacgacctcc tccataagcc ccatcacctg aggcccaatc
     2341 cgtgaaggga caaaacaaat aatcggcgta ttgtggatcg tcatccccct gagcactccg
     2401 atagacgggc aactgtaatt cttgattgtt taacgtaaaa tacaaaatgc catattgaac
     2461 atactctggc cgacgctccg ttgtggtggg cattaaaaaa ggcgttgcat ttggtgtgga
     2521 ttccaggcgc gccgttaccc gataatccag gttgattgga taccagttta gtcctttgaa
     2581 ttggcttaaa tcttctggtt ttaaaatact ttgctcggga tccgcaaatt cgcgatccac
     2641 gacgtcttga tagttttgaa tttcctgaac aatacgctcc ttgttttggc cattaacagg
     2701 agcatgtaac cccagaaaac tcaaaaataa cagcgtggtg taataagaga agagcgtggt
     2761 ataaaaagac ttcataattg gggcactata ggatgatgat cgacaacttt ggataaaatt
     2821 atttgtgttt tggtctcacc aaaaaggatg agcttatcaa taaactgctc gaggtgtttt
     2881 tggttgatta aaaccacctc cataacaatg ttttcatttc ctgtaatccg atagcaattc
     2941 acgacctctg gaaaactctt gacttgttct aaaaatggtt tgagttttcc catgaatgca
     3001 cgcacggtaa taatggcccg caattgatag ccacactcaa aagaagaaac ctcagtgcga
     3061 taacctttaa tgatcccggc atcctccatt ttcttgattc gttcatttac cgctggcgag
     3121 ctgatcccca ctattcgccc tatttccgca tgagaatagc gggcattcgt ctggagacat
     3181 tggagaatac ggcgatttaa tagatccatg ttattttcaa aaattattaa aagttaccga
     3241 aatttaatta aaaaaactta aattttaaat gataacttaa tttttagttt aaatcattaa
     3301 gtgttgatgg gcgccaataa attaaatttg attaattctg tttgcctcag aattggctat
     3361 gaaaaaaaaa atgtcgcatc gtttacatta tccgccattg tattacaagg ccctcgatat
     3421 tttgacctta tcgcgtcata tgtcctatct ctacactgaa gacctcatcg gaccggaact
     3481 tcatgggcct gagcacaaag agatctattt tacaggagat attattcagc aatcttgtag
     3541 tctggtccca gagattctgc gtgcagaaaa tcagccgtac gccgaggaca aaagacgcta
     3601 cgccaaacgg gttaaactcc taacaaaaaa gctcttctat acctgtgatc gacttgaaaa
     3661 gagccctgtt caaagtaaag aatttttacc tctgtttaga aaagagctca gacaattccg
     3721 caagctacag cgcacttggg cccttatgtt ataaattaag gactacatat ttcggcggta
     3781 ttgcccccct acatcaaaca acacacgagt aatttgccct aaagacgcca ccttgacggc
     3841 ctgcatgagt acggcaaaca aattctcatt gtttttagcc gccactgtta aggccgctaa
     3901 agctcctttg agttgtgcgt ccctgtttgc atgcaaggcg cgcacggtgt ttatttgaag
     3961 ctgtttctct tgctcggtcg cccgaatcac ttctgaggga attatggttg gggatccttt
     4021 gctgctcaaa aaggtattga ccccgatgat cggaaattcc cccgtatgct ttagggtctc
     4081 ataatgtaaa ctttcctctt gaattttacc gcgttgatac atggtctcca tagctccaag
     4141 aactccgcct cgctcggtaa ttcgatcaaa ctctatcaaa acggcttgct ccactaaatc
     4201 ggttaactcc tctatgatga atgccccttg aatcgggttt tcatttttag cgagcccgag
     4261 ctccttgtta ataataagct gaatagccat agcgcggcga acgctgtcct cagttggggt
     4321 ggttatggcc tcatcgtaag cattggtatg cagtgaatta caattgtcgt atatcgcgta
     4381 aagcgcttgt agagttgtgc ggatatcgtt aaagtcaatt tcttgagcat gaaggctgcg
     4441 tcccgaagtc tgaatatggt atttgagcat ttgtgatcgt ggaccagcgc cgtatttttc
     4501 acgcatggct ttagcccaaa ttttccgggc gacacgaccg attaccgcat attcaggatc
     4561 aatgccatta ctaaagaaaa aagatagatt tggcccaaaa tcatcgatac tcattcctcg
     4621 tgataaatag tactctacat aggtaaaacc attcgacaag gtgaaggcca gctgggtaat
     4681 cgggtttgcc ccagcctcag caatatggta ccctgaaata ctgactgaat aaaaattcct
     4741 gaccttttgc tcaataaaat attgctgtac atcacccatg aggcgcaggg caaattctgt
     4801 cgaaaaaata caggtatttt gtgcctgatc ctcttttaaa atatcggctt gaaccgttcc
     4861 gcgaacctgc gttaatgttt gggccttaat tttattatac acttcggtag gtaacacttg
     4921 atccccggtt atgccgagaa gtaaaagccc taacccattg tgtcctttag ggagttcacc
     4981 gtgatatttt ggacgtaagg ctttatccgg ataatgccgc gcaagggcct ttgctacctc
     5041 accctctaat tgatgttctt tgaggtactt ttcacaattt tgatcaatgg ctgcattgag
     5101 gaaaaatgcc aaaaccattg gcgccgggcc gttaatggtc atactcaccg aagtcattgg
     5161 atcggataaa ttaaaaccgc tgtacaattt tttggcgtca tccaaacaac ataccgacac
     5221 ccccgcattg cctatttttc cgtaaatatc gggcctcagg tccgggtcat gcccatatag
     5281 ggtc
//
LOCUS       DPUP01000220           11890 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3330,
            whole genome shotgun sequence.
ACCESSION   DPUP01000220 DPUP01000000
VERSION     DPUP01000220.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 11890)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 11890)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11890
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(6..704)
                     /locus_tag="DHV98_08425"
     CDS             complement(6..704)
                     /locus_tag="DHV98_08425"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06359.1"
                     /translation="MSPIQGQQWNDPLLHYPRFEACATQDSTELPKCFTQQINLLIQD
                     TAKNWQVENSIPGALSVLFEVDKTGNFVVRYVDSPSEALRIYVEDFFKNLPEIRPASY
                     NGRTIYMQFRLQFYPNDLAQIQWSMIGDSGKDLVNDAADLKSIEPNTVPEIKSFARQK
                     SGEYGAVVQDKYQGQGYQSGVLIPLSHRRYDEFEAAMNQVGSNNHTAQKPYRFTEVQA
                     YYDLKAADSSLKKP"
     gene            complement(853..1569)
                     /locus_tag="DHV98_08430"
     CDS             complement(853..1569)
                     /locus_tag="DHV98_08430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003439218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HCK06360.1"
                     /translation="MEPKKNPKADLNQWSSIYLLAGLVFMLFVAWQAVEWKTYDRSNL
                     GKDMLDVGDDLLEDVPVTQILTPPPPPPPPPPAPEVIEVVEDDEEVEETIIESTETDA
                     EDVIEIEEIEEVEEEIDDVPFAVIENVPVFPGCERAGNNEAKRACMSEQVQKFVQRKF
                     DTDLANDLGLEGRQRISVQFKIDKRGNVVDVRARAPHPRLEQEAIDVVKALPKMTPGM
                     QRGQPVGVLYALPILFQVEN"
     gene            complement(1639..2013)
                     /locus_tag="DHV98_08435"
     CDS             complement(1639..2013)
                     /locus_tag="DHV98_08435"
                     /inference="COORDINATES: protein motif:HMM:PF04892.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06361.1"
                     /translation="MPRLLGDKIRVWLAITAQIMVTVALLWPAPDWPQTDVPMADKWA
                     HLLVFSVLFYLWAQALSVKNQIRRLSVKLVIALIFYGTIIEVIQDSWSISRTGDFMDV
                     LANTVGILLGLIVFNIKEKLSF"
     gene            complement(1991..2371)
                     /gene="gcvH"
                     /locus_tag="DHV98_08440"
     CDS             complement(1991..2371)
                     /gene="gcvH"
                     /locus_tag="DHV98_08440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HCK06362.1"
                     /translation="MNIPAELKYTKDHEWVSVEGDVATVGITDFAQGELGDIVYVEVE
                     TLDETLEMEAVFGTVEAVKTVSDLFLPVSGEIIEFNDALEGEPELVNSDPYGQGWMIK
                     VKISNPSELEELLSAEDYAAIIGG"
     gene            complement(2406..8570)
                     /locus_tag="DHV98_08445"
                     /pseudo
     CDS             complement(2406..8570)
                     /locus_tag="DHV98_08445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781647.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing start; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein SprA"
     assembly_gap    5622..5705
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    7321..7408
                     /estimated_length=88
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    8571..8717
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8718..>9649)
                     /gene="sprA"
                     /locus_tag="DHV98_08450"
     CDS             complement(<8718..>9649)
                     /gene="sprA"
                     /locus_tag="DHV98_08450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003439213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell surface protein SprA"
                     /protein_id="HCK06363.1"
                     /translation="EEAQRNLLPTFYVNSNFFESVFGGNTIEIIPQGSVEMDLGLLYT
                     KQDNPQFSPRNRSNLSFDFDQRISLSLLGKIGERLQITANYDTQSTFDFQNSIKLEYT
                     PTEDDIIRKIEVGNVSMPLNSSLIQGSQSLFGVKTQLQFGRTTITGVFSEQRSETRSV
                     VAEGGATVTDFELFALDYDENRHFFLAHYFRDSYDRVLKNYPFINSNVQITRAEVWIT
                     NRNNTTNDVRNIIALQDIGESKSENIGLNAIPGGFINAPGTAFPDNKNNDFNPFGIDN
                     PGVQSILSPAIRDVATAASGFGGVGVNDGIDYVS"
     assembly_gap    9650..9826
                     /estimated_length=177
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9827..10172)
                     /locus_tag="DHV98_08455"
     CDS             complement(<9827..10172)
                     /locus_tag="DHV98_08455"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06364.1"
                     /translation="MGRVILNGWKFYLPGVLLCGFLLFGADLKAQEDTLVTGSVMGRL
                     DLPNPNSIENMYSYDPITDRYILSRMLGDFDISYPVILTPEEYEERVRNEQIKSYFKE
                     KIDAADGRKEGAE"
     gene            complement(10176..10757)
                     /locus_tag="DHV98_08460"
     CDS             complement(10176..10757)
                     /locus_tag="DHV98_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HCK06365.1"
                     /translation="MIAQVQGRLIEKNPTDVVVDCHGVGYFLNISLHTFSQIPDQENI
                     RLYTQLLVREDAMTLYGFSSKEERSVFNLLLSVSGVGASTARTMLSSLTPMQVRDAIV
                     SEDLTVIQGVKGIGAKTAQRVILDLKDKIIKLYGEETSGVVSSNTNRNEALSALETLG
                     FARKIAEKACDAVLKSAPSASVEEIIKMAFKHL"
     gene            complement(10848..>11890)
                     /locus_tag="DHV98_08465"
     CDS             complement(10848..>11890)
                     /locus_tag="DHV98_08465"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006796158.1"
                     /note="NADP-dependent; catalyzes the oxidative
                     decarboxylation of malate to form pyruvate; decarboxylates
                     oxaloacetate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HCK06366.1"
                     /translation="LLDRMGNDHKLLKLLFDRARHNPKRVVFAEADHLDVIKAAQIVY
                     EEGFAIPILLGRKEVILALKKEIDFDEDVLIIDPKCDEEEKRRNAYAEEFWAQRKRKG
                     VTQFDARRLMRERNYFGAMMLNLGEADAMVSGYARSYPSALRPILETVGKFDGVNKVA
                     ATNLMLTPKGPIFISDTSVNINPTAQELANIAQMTNHTMKMFGVNPVIAMISYANFGS
                     SDDPHALKVRQAVAMLHESNPDMILDGELQVDFALNSEMLKNKFPFSKLAGKKVNALI
                     FPNLDAANSNYKMLKEQKDVDSIGPIMLGMRRAVHIFQLGASVEEMVNMTAIAVVDAQ
                     QKEKRRRTKSRS"
BASE COUNT         3105 a         2634 c         2354 g         3301 t
ORIGIN      
        1 gtttttcacg gttttttcaa actgctatcg gcggccttta gatcgtaata ggcctgaacc
       61 tcagtaaaac gataaggctt ttgggctgtg tgattattgg accctacttg gttcatggct
      121 gcctcaaatt cgtcataacg ccggtgcgaa agaggaatta aaaccccgct ttgatacccc
      181 tgaccttgat atttatcttg aacgaccgcg ccatattctc cactcttttg ccgggcaaaa
      241 cttttgattt ctgggacggt attaggctca atggacttca ggtccgcggc atcattgact
      301 aaatctttgc cagaatcacc gatcatggac cattgaattt gtgctaaatc attagggtag
      361 aattgcaatc taaattgcat ataaatggtc cttccattat agcttgcggg tctaatttca
      421 ggtaagtttt taaaaaagtc ctcgacgtaa atccgaagcg cttcagacgg actatcgaca
      481 tagcgcacca caaagtttcc cgttttgtcc acctcaaaaa gtacagatag cgcaccaggt
      541 attgaatttt cgacctgcca atttttcgcg gtatcttgaa tcaaaagatt gatttgttgc
      601 gtaaaacatt tggggagttc tgtcgaatct tgtgtagcgc aagcctcaaa tcttggatag
      661 tgaagcaaag ggtcattcca ctgctgaccc tgtattgggc tcatgcacag cttaaacaat
      721 atagcgtgaa caatcaaacc cctcgacacc gaaatacgtg aactcatttg gataaatatt
      781 tcatttgcac gcctaaacac aaacgccccc ataagaaatg tggaggcgat cgtttgtatt
      841 aattacgaat ttctaatttt cgacttggaa caaaattggc aaggcgtaaa gtaccccaac
      901 cggctgaccg cgctgcattc ctggggtcat ttttggcaag gccttgacca catcgatagc
      961 ctcttgttca agacgtggat gtggtgctct tgcgcgaaca tcaaccacgt ttcctctttt
     1021 gtcaatttta aactgtactg aaattctttg acgaccttca agtcctaagt cgtttgccaa
     1081 gtctgtatca aatttacgct gtacaaactt ttgcacttgt tctgacatac aagccctttt
     1141 tgcttcgtta ttgcctgctc tttcacaacc aggaaataca ggtacatttt caattacggc
     1201 aaaaggaaca tcatcaatct cctcttcaac ttcttcgatc tcttcaatct ctataacgtc
     1261 ttcagcatcg gtttctgtgg attcaatgat cgtctcttca acttcttcat catcctcgac
     1321 cacttctatg acctccggag ctggcggcgg cggcggtggc ggtggcggtg gggtcaaaat
     1381 ctgagtaaca ggcacatcct ctaggagatc atcacccaca tcaagcatat ctttgcctaa
     1441 attactacga tcataagttt tccattccac agcttgccat gctacaaaga gcataaaaac
     1501 caagcctgcg agcaaataaa tactgctcca ctggtttaaa tctgcttttg gatttttttt
     1561 cggttccata ctgaatagtt tatagcgttg ctaaaataga taaaaaaagt ggggtttaaa
     1621 aaaccttatt tgcccttttt aaaaggataa tttttcctta atgttgaaga caattaatcc
     1681 cagtaaaatc ccgacggtat tcgctaatac atccatgaaa tctccggtgc gtgaaataga
     1741 ccaactgtct tgtatgactt caataatagt gccataaaaa ataagcgcaa taacaagctt
     1801 aacactcaat cggcggatct ggtttttgac acttagcgcc tgagcccaca aataaaacag
     1861 taccgagaaa accaataaat gagcccattt gtctgccatt ggcacatcgg tttggggcca
     1921 atcaggagcg ggccatagta gggcaacagt caccataatt tgtgccgtaa tcgccagcca
     1981 aacccgtatt ttatccccca ataatcgcgg catagtcctc agcggataac aactcttcaa
     2041 gttccgatgg gttacttatc ttgactttaa tcatccagcc ttggccgtaa ggatcagaat
     2101 taactaattc gggctcgcct tcaagggcat cattgaactc aataatttcg ccggacacag
     2161 gcaagaataa atctgaaacg gtttttaccg cttctacggt cccaaaaacc gcttccattt
     2221 caagagtttc gtctaaagtt tctacttcca cataaacgat atcgccaagt tctccttgag
     2281 caaaatcagt aatccctact gtagcaacat cgccctccac agaaacccat tcgtggtcct
     2341 tagtgtactt taattcggct ggtatattca taacttaaat ggttaaaatg ttagttgatt
     2401 ttttgttagt taccaaaatt atagcgcagg gtgaagccac tgcgaattgt cgtttgcgga
     2461 aaagcagtac tgatggcata ttccgaatac gtatggtcat agaaaaataa agcggtcaga
     2521 tttttggtta gcgcataatc cgtagaaaac tgcaacccgt agatggtctg tcctgccgtg
     2581 gtctggttat tatccacgtc taaataacgg atgatggttt tgttatccct tacggaaaca
     2641 tctaatttaa agtttaagtc gcttttcata acagatcgct tcccgccaaa attcgtgcca
     2701 atacgcaagt ctttgatgcg ataacccaga ccaaggatta actcttggcc ttgaatttct
     2761 gtcatcaaat tattggcgaa actcaatgaa agtgcacgat cttttctgat ttccgcaagg
     2821 attttaatgg aattcatcat ctcgaaatcg accttaatca atggggagaa ttgttccgtt
     2881 aggttcacgt tatttaaaac tatttctggc ttgaaattac cggactggtc ggtttcagct
     2941 ggattctgac gattgaaatc caaatttgat tggaattgat tcaaggtata agccgctcga
     3001 taaccgtgct gaacggagaa acgtttaaag cgcttcttaa accaatccat tttcatgaaa
     3061 cccgtatact tgagatccca gtttggaaga gggatatctc taaaaattcc tgagcgctcc
     3121 ttagccgcat cactccctcg gtaggctgag acaaaagccg gcaggagcac ttgttggctg
     3181 tttttaccaa agccttcggg gtatccttca ttatcgacag gataagaatt cgaaccgtaa
     3241 aaacgttcgg ctaagcgctg ggcaatggtc aaacgattgg tcttaaatga ttcaaatgcc
     3301 tgagatccaa attcatcact tgaactaaaa gcggtattga tcagtactgt agaaatatta
     3361 aagtttccga aggtgttcgg ggtcagtgaa cgataaagcc catcttcaac aatgtaattt
     3421 tctgcaaaat tttcagaata caaacgtgag gcattaaaat caatttttaa atcgtcaaac
     3481 agctcagtgt ttacctgcat atctaattga cggctttcca cctcggtata ctgctggttg
     3541 aattcaggaa atatcgttag ccagccattc cgcgcagcca atgccctaac ctcagcctgg
     3601 gagccaaata caaatcccgc tgtaggacgc aacgatccac caaagccaac cgatggtaaa
     3661 tatccgggta agaaaatccc attattttct acataattga cctgtgcttt tttcaccgaa
     3721 gtcgccaacc cgattaaaga attgattact ttttgtcctg gtgagagctt gcgcgttggg
     3781 gctgatgtgc ggcctcctcc attgcgcatc gccataattt gttctcgttt atttaaattt
     3841 tcggccttac cccctttgcc tgcggcgcca cccaacaagg agttgctctc cgctccaccc
     3901 tgatcatctt cagattcgga accggtcaac tttttcaggc cgatatagcg atacaagctc
     3961 gtcagatcca gattcgagtt aatccgatgg gtgctcgcat tttggactga gtttcctaaa
     4021 tcataaaaaa cagaggggcc attgtctgat gggatttcaa cattgctaaa caaatcactt
     4081 ccatcttgcc attgataatc cccttgatag gaataagtgg cacgcaacca ctttaaaaat
     4141 ggaaacttag cggtgggcaa atcgtagttt aattggagcg attggacatg ctgatttgga
     4201 tctccaattt caaagaaacc gtcccagaga cctatggtgt tgtccacccg cccttgatct
     4261 atgtaattat tgataattcg gttattggcc gcattaaaat taaaacgcaa agaattcgtc
     4321 aggttataat ttatcgtata ctgccaatca aacataaaat tcctctgata caaagtggga
     4381 agaccgattt gatccggcaa caaattaagt tctctgaatt tttgttgatt aaaattcctg
     4441 ataatattac tgcttacggt aacattgctc ggtaatggat tgaaattaaa atccttcaac
     4501 cattgccaat agcggcccat aaataaacta tcactcttct taaaaggttc aataggcttg
     4561 ttattgaagc tgtagtcgta ggtacccccc aatcgaacac gctgatccat cgcggactct
     4621 acttcaaaat catgatgctc ttcttcgtta taggagtaag agaaggtaaa gttctccaca
     4681 tcatagggca tcggggtcga ttcattttct tgagatcgat ttttgcgcac cccaatgaaa
     4741 tttatacttt ggcgtttggt ataattaatt gattgttcct caatcgcatc acgcgtcgct
     4801 gcatcgggcg cattatctaa ccgctcttgt agcacgatat catcaaattc tgggtcgtat
     4861 ttcggggtaa tcaattcttc ctgaataccg taattaaacg gcaattgtat gccccatttc
     4921 ttggggagta gctgacctat attaatattg gtcacaatat catattgttg cagatcttct
     4981 aaactgcgct gattaggccc ttgttcaatt gaaccaaaac caatggtact ggtacgtccg
     5041 gtggcgctga tgtcagcaaa atcagcgatg ttggcatcca tattggctac ggcagcccat
     5101 ccccctttgt tttctagttc actcatgcgc aattcgttga accatacttc accacaaaca
     5161 ttagtgttgt ttttattgcg caagcccacc atgatcaccc gaacatttcc aaaactcgga
     5221 tttcctttga ttccaatgcg cagcgggttt gaagaaccga taaaagtcgg gtccagctca
     5281 gcttgatcgt aataaacgac ttgagtagga tctgctgttc catcagccaa gacttttgtt
     5341 tttatggcct gaagcaaagc caaaggtaaa tttaaacggt tttcctccgg ccaaacgagc
     5401 gaagcgtcag catctgtagg ttgttctagg tacggagaca cattcagggg catttctatt
     5461 tcatagaagc tcgtattgag gtcgttcccc aaacgaatga acgcagccag ctctccatcg
     5521 gccaacaaac tcgcaggagc aggaagtgac tcagcgtgga tgaacatttc caagttttta
     5581 tattgacgca tgtctacatt gaagtttttg taaacagcgc gnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnncaggt tgcaaatcgc aaacacgcaa ggccaaagat tgctcgtctt gacggataat
     5761 attgttgtta ttgttgagct cttctcgata tacccccggt ggaatgacat aattactgtt
     5821 ctgaatcacc ccaacggcct cattttcaaa agttgtattg tccaactcat taggactgtt
     5881 atccacatcc aaagactccg tgtaacggcg ataatctcca cgatagagtt ccatagtacc
     5941 aaaacgcaaa accgtttctt gctcaaaacc ggtgagatac atgcgcatga atcgaataga
     6001 acggaaatcg gcgattccgt ttactgcatc ggtatattca cttaagggta ttctaaattg
     6061 aatccaacga acgggcaagt cctgatttgc gggggtgggc actgtaattt ctttgatatc
     6121 ggtgacatag ggcgattcca aattcatgcc cggacgaata tcgatggcat attcgaaata
     6181 actgtccacg gtattcatgg tattgtcccg gttgatatct tcgacgtcag gctgagcggt
     6241 tgacccacga ttcgtattgc tcagcgtttc tgggctgttc ccctgtgttc cattgtaaaa
     6301 atcataacgt tcgagcagag agccttcggc ctgtaaaaaa taggtgtaat tgtctcgggc
     6361 aggatcttct tgaccggcaa aacttgggaa gaaagcagcc tcatcagcat catttaatcc
     6421 atccaaaccg acatcctgat tttctcgatc cggcccggta ctgctaaagg tataaaccag
     6481 tgattgattg ctcggcacgc ggccccaatt ggtttgtatg gtattcaatg tcgagccatc
     6541 ttccggaaga ccgttttcgt attgtttgcg tccatctttg agaacgtcct cagagatgtt
     6601 tcctaaatta aagacaagtt tccccccctg attattggta tactcctcat agataaatgg
     6661 atccatgagc cagaactgaa tatactccac attggatcgc tcaaaatctg tggtcgataa
     6721 ttgtctcgag attccggcaa agcgtgtttc aggattcggc aaggcgttgt ctgttgccgc
     6781 ggggttaaaa ttatagggtc ctcgctctgc gggcttgtag ttaaggtcca agctaaacaa
     6841 ggcctgagtt tgcccctgaa cgatgtcttg atctggaaat atctcgttgc ggaacaagcg
     6901 gcgcgtgaat ggcgatgaaa gatcttgttc cccgacacct gctggtcttt gggcactgta
     6961 aaaaatcggg tcaatcgtat accagttcag ctttgcccgg ttgtaattgg ccgccaaatt
     7021 attattctct aaatcgcccc ccaggccgat tggcgtactg gacaagaacc aagtcagtgg
     7081 cgcagaaata tcaatagcgg tctgtgccgc ttcaaagtca tcaatatagg ccgtagcttt
     7141 cccgccaaaa tcagagacct ttggcgctcc aggcaataaa taagcaaact ctccccgaac
     7201 cgaaacctga gaaggaacat cggtgtctat attgggcagt ttattcacca tacgggtcaa
     7261 gaaaggcacc tctgtagaat aattcatatt gaccccaaac atcgtgttgt ttatcggctc
     7321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7381 nnnnnnnnnn nnnnnnnnnn nnnnnnnncc gccttttgcg tgagtggacg ttcgttgaga
     7441 tttaacaagg ttcctcccac ctgaaaatca tcactgaatt tatgctgaac atcaattccg
     7501 gaaaatcttt tggtttgttg accaaacatg gagttatttt cgacgctgat gttaatcggg
     7561 gtgtttgaat tctgaagcga tggatccaaa atttgcacgc gtcctaactg gtaattcacg
     7621 gtgtaatcca ccccctctac caaggttctt cctccggcag ttaccgtaac agatccttgc
     7681 ggaatattga atgcgcctat ggggatccca tcacttcctg tagacttata ggtcccctta
     7741 agttggaatt tgtttttctg gctctcctgt tgttcggcct gaattttagt cgttcgatat
     7801 agcgaacgga aaacgtattt ggcctgattc gcattatagg tttcaggcaa attataatac
     7861 tgtgtcccct ctgtagtcag tttatcaaaa agataacctc caaaaggttc tacactggta
     7921 aatataatgg ctccattttg acgatcaacc gtaattcctg gataaaagtc aaaaaatcca
     7981 tctccgcctt gttgcggatc gttgttgtag ttaagtcgat ctaaattaaa cacccgaagt
     8041 aaggtggcat cgtttaaatc caccgcatta acatcggaaa tatcgggctc agggaaattc
     8101 gttccggcaa cgggcttgat gtaatttaat gggcttgggt ccaaatacaa aatattcatt
     8161 cggaagtcct cttgctccaa ttgatatgcg cctatgggat aaatattctt catcatcaag
     8221 tcccaaactg gttcttgaac attcgtgatg ttgctcttaa gcagttttac cactaggttt
     8281 tgtgggatgg cttgaacggt ccctgggtct cccgagccag gatcaccacc cggatctcct
     8341 cctggatcac caccgctggt ttgtcccgct tgtccggtgg cctgaacccc atcggtagaa
     8401 aactcaccga cttgatagac tttgccatta acggtgtact ggaatgctac ggccaaaacc
     8461 tcgtcattat tcaggcgctg attcaatgaa atataaccga gctgttgatt taagttgtac
     8521 tcgttgggct ggagtttacg cgcattttca agactcacat aatcaattcc nnnnnnnnnn
     8581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8701 nnnnnnnnnn nnnnnnngac tcacataatc aattccatca ttaacgccaa ccccgccaaa
     8761 gccagaggct gccgtcgcga catcgcgaat tgccggggat aaaatacttt gtacgccggg
     8821 attatcgatc ccaaaagggt tgaagtcgtt gtttttgttg tccgggaaag ccgtgcctgg
     8881 ggcattgata aatcctccgg gaatggcatt caaaccgatg ttttcactct ttgactcgcc
     8941 gatatcctgc aaagcgatga tattgcggac atcgtttgtg gtgttatttc tgttggtaat
     9001 ccaaacctcg gctcgtgtaa tttgaacatt cgaattaata aaaggataat tcttcagtac
     9061 gcggtcatag ctatctctaa agtaatgggc taagaaaaag tgacgattct catcataatc
     9121 caaggcaaac aactcaaaat cagtaacggt tgctccgcct tcagccacaa cagatctggt
     9181 ttctgagcgc tgttcagaga aaactcctgt aatggtcgtg cggccaaatt gaagctgagt
     9241 tttgacccca aaaaggcttt gggacccttg aatcaaactg ctatttaagg gcatactgac
     9301 attaccgacc tcgatttttc ggataatatc atcttctgtc ggggtgtact caagttttat
     9361 tgaattttga aaatcaaaag tcgattgggt gtcataattt gctgtgattt gaaggcgttc
     9421 accaattttt ccaagcaaac ttaagctgat gcgttgatcg aaatcaaagg ataaattgct
     9481 tctgttacgc ggagaaaact gagggttatc ttgtttggta tacaacaggc ctaggtccat
     9541 ctccacacta ccttgaggaa taatttcaat ggtattccct ccaaaaaccg attcgaagaa
     9601 attcgagttt acgtaaaacg tgggcaagag attgcgctgg gcttcctcan nnnnnnnnnn
     9661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncctc agcgccctct
     9841 tttcgtccgt ctgcagcatc aattttctct ttgaaataag attttatttg ctcgttgcgc
     9901 acgcgctcct cgtattcctc tggggtgagt ataaccggat atgaaatatc aaaatcaccc
     9961 agcatgcggc ttaaaatgta tcgatccgtt attggatcgt agctatacat gttctcgatg
    10021 ctgttcggat taggcaagtc gagacgcccc attacagatc ccgtaacgag ggtatcttcc
    10081 tgggccttaa ggtcggcccc aaaaagcaaa aatccacaga gtaaaactcc gggcaggtaa
    10141 aatttccatc cgttaagtat gactctcccc aaacgctaca aatgtttaaa tgccattttg
    10201 ataatttcct ctactgaagc tgaaggcgca ctcttaagga ctgcgtcgca tgctttttca
    10261 gcaattttac gcgcaaatcc caacgtttct aatgcagata acgcttcatt tcggttggta
    10321 ttgcttgaaa ccacaccaga agtttcttct ccgtaaagct ttataatttt atcctttaaa
    10381 tccaagatga ctctctgggc tgttttggcg ccaataccct ttaccccttg aatcactgtg
    10441 agatcctctg agacgatcgc atcgcgcact tgcatgggtg ttaaagagga gagcatggtt
    10501 ctggctgtac tcgcgccaac accagaaaca gacaagagca gattaaacac cgagcgctcc
    10561 tcttttgagg aaaaaccata aagcgtcatg gcgtcttcgc gcaccaacaa ctgggtatat
    10621 aaccgaatat tttcttggtc gggaatttga gaaaaggtgt gtaacgatat atttagaaaa
    10681 tagcctacac catgacaatc aacgactaca tcagtcggat ttttctcaat gagtcttccc
    10741 tgtacttgag caatcattat tcgcgctggg ttaaaggccc aaatatagta taaattattg
    10801 gcattgatca gccccaaaac cgcgaaaaaa tgaggatctg cggcccgtta actcctagat
    10861 tttgttcggc gacgtttttc cttttgttgt gcatcaacta ccgcaattgc cgtcatattc
    10921 accatctctt caacactggc tccaagctga aaaatatgaa cagcgcgtcg catcccaagc
    10981 atgatcggcc caattgaatc gacgtctttt tgctccttaa gcattttgta attactgttt
    11041 gccgcgtcaa ggttaggaaa gatcaaagca ttgacctttt ttcccgctaa tttggaaaaa
    11101 gggaacttat tcttgagcat ctcactgttg agtgcaaaat caacctggag ctctccatca
    11161 aggatcatgt caggatttga ctcatgtaac atcgctactg cttggcgtac ttttagtgca
    11221 tgagggtcgt ccgacgagcc aaaattcgca taggatatca tcgcaatgac ggggtttacc
    11281 ccaaacattt tcatggtatg attggtcatc tgcgcgatat tggccaactc ctgggctgtc
    11341 ggattaatat ttaccgaagt gtccgagata aatatggggc cttttggcgt gagcatcaag
    11401 tttgtggcgg caactttatt gaccccatca aatttaccga cagtttctag gatgggcctc
    11461 aatgcagagg gataggaacg cgcataaccc gaaaccatag catctgcctc acctaggttg
    11521 agcatcatgg cgccaaaata gttgcgctct cgcatcaatc ttcgcgcgtc aaattgtgtt
    11581 actccctttc gtttacgttg ggcccagaat tcttcagcat acgcgttgcg acgcttttct
    11641 tcttcatcac attttggatc aataatgagt acatcttcat caaaatcaat ctcctttttg
    11701 agcgccaaga tgacctcttt gcgtcccaac aatatcggaa tagcaaaccc ctcctcatag
    11761 acgatttgcg ctgccttgat cacatccagg tgatctgcct cggcaaaaac gactcgttta
    11821 ggattatggc gtgcccgatc gaaaagcagt ttgagcaact tgtgatcatt acccattcga
    11881 tcaagtagtt
//
LOCUS       DPUP01000221           14729 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13725,
            whole genome shotgun sequence.
ACCESSION   DPUP01000221 DPUP01000000
VERSION     DPUP01000221.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14729)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14729)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14729
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..646
                     /locus_tag="DHV98_08470"
     CDS             <1..646
                     /locus_tag="DHV98_08470"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06367.1"
                     /translation="GLAAMRGQWPKVKVLLPREQGYIDPDDILPQLSDSRENWVVLES
                     RKPVIISNVIGVLNGMAYYQQKNEENDTIKKTYDVRLFTSAKNESFDFDDISNIHLSH
                     LKFSYPSLSRPYSIGETLEPFVLTYLERFGTTPNKYAARGFDLTLDLILRQASTNGPL
                     TQALVMPETTQYTENKFRYELGPQGGYENKAFYLLKYTQDMGIEELINSLGARN"
     gene            691..2310
                     /locus_tag="DHV98_08475"
     CDS             691..2310
                     /locus_tag="DHV98_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014780836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HCK06368.1"
                     /translation="MNTTKYIFVTGGVSSSLGKGIIAASLAKLLQARGFTVTIQKLDP
                     YINVDPGTLNPYEHGECYVTDDGAETDLDLGHYERFLNHPTSQANNVTTGRIYQSVIE
                     KERRGEFLGKTVQVIPHITNEIKERIQHLGQDGRYDIVITEIGGTVGDIESLPYIEAV
                     RQLKWELGRHNSLFIHLTLIPYLAAARELKTKPTQHSVKTLMESGIQADVLVCRTEHE
                     LSDDLRTKLALFCNVEKEAVIQSIDAKTIYDVPNLMLDEGLDKIALKKLRLESSQEPN
                     LTQWNEFLCRHKNPKGVVTIGLIGKYIELQDSYKSILESFIHAGAANEVSVEVVSIHS
                     EHLTPENVADEVGALDGLLVAPGFGERGIEGKIAAVQYARTHDIPFLGICLGMQMAVI
                     EYARNVVGLKGANSTEMDAKTPYPVIDLMEAQKSVTDKGGTMRLGSWACKIVPDSIVG
                     SIYQSEEIQERHRHRYEFNDDYRTQIEDAGMRVTGVNPQTGLVEIVEVPEHPWFVGVQ
                     YHPEYKSTVANPHPLFVRFVAKAYALSKNKK"
     gene            2345..4306
                     /locus_tag="DHV98_08480"
                     /pseudo
     CDS             2345..4306
                     /locus_tag="DHV98_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008637445.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
     assembly_gap    3120..3179
                     /estimated_length=60
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4340..5047
                     /locus_tag="DHV98_08485"
     CDS             4340..5047
                     /locus_tag="DHV98_08485"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06369.1"
                     /translation="MDIKRHIFICVMALLVMGGSAQAQEQVNQLDQNGARHGLWKKYY
                     EGTKQLRYTGTFNHGIEVGVFKYYCQSCGDQVVVIRDFDSIPGACAVTFYTDRGQLVS
                     QGRMQDQKRIGPWVTYHKGGTTIMTKEHYKDDLLDGVKNTYYPNGLLAESCIYKQGLR
                     QGKCSYYGPGGQIIKTFTYDNDQLHGPAEFYDLSGNLERTGIYSRDKKSGIWKTYVNG
                     VVTQEEDFNDQKRSHER"
     gene            5019..6239
                     /locus_tag="DHV98_08490"
     CDS             5019..6239
                     /locus_tag="DHV98_08490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013868786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HCK06370.1"
                     /translation="MIKNDLMSARLNKRVVVGLSGGVDSSVAAYLLKEQGYEVLGLFM
                     KNWHDDSVTISNECPWLEDSNDAMLVAQKLGIPFQTVDLSAQYKERIVDYMFREYEMG
                     RTPNPDVLCNREIKFDVFLEIAQGLGADYVATGHYCQKQTSVINGTRVHHLLAGADAN
                     KDQSYFLCQLTQDQLSKALFPIGHLQKDEVRVIAKAQALITAEKRDSQGLCFIGKVRL
                     PDFLQQQLKAKKGAIIEIPEDSVLYQNGPENQATQEQWHEYWRRPFRYAPNDGTVVGT
                     HQGAHFFTIGQRKGLAVGGKEEPLFVLATDVIQNIIYVGQGKAHPGLWRRGLRVSPNE
                     VHWIRQDLRLSPGQELEVKARIRYRQPLESARLFQKDSGLYVIFEKEQTAISSGQFVA
                     WYRDNELLGSGVIE"
     gene            6242..7842
                     /locus_tag="DHV98_08495"
                     /pseudo
     CDS             6242..7842
                     /locus_tag="DHV98_08495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094705.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
     gene            7843..8768
                     /locus_tag="DHV98_08500"
                     /pseudo
     CDS             7843..8768
                     /locus_tag="DHV98_08500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013685169.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
     assembly_gap    8275..8289
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(8739..9929)
                     /locus_tag="DHV98_08505"
     CDS             complement(8739..9929)
                     /locus_tag="DHV98_08505"
                     /inference="COORDINATES: protein motif:HMM:PF13354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06371.1"
                     /translation="MVKSINPYCKGLAVLGLFMIIMGGCHSPGQKDTADVLLKTLKGE
                     DWAIQRVMAQAENHELHIELILPKDTAHVSENEGAPQGLQRSAVDYSKGQYFYPASTV
                     KLPVAIFAAQWTELQPDISIITPYRIENDSTSHSIAQDLIDIFAVSDNQAFNRLYDLL
                     GRDYVNQRMAELNIGPFRLAHRLSVSDAAAQEHPKYFFETAQGTHTFQAGPDQPLDSL
                     GVAGMQKGIGYIQEDLLIEKPIDFSRKNYFPLSSMMKFMERLYPLDCFDIPTPLNWAK
                     NTEAFVKTIMMSVPRKQGYDETEHPDGYVKFFFLGDSNERIDPALHLHNKVGYAYGTL
                     TDIAYVVDKKHNLNYILGATLLVNENKIFNDNVYEYDSIGLPFLAQTARRLHKLLIQA
                     KSGR"
     gene            complement(9914..>10044)
                     /locus_tag="DHV98_08510"
     CDS             complement(9914..>10044)
                     /locus_tag="DHV98_08510"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HCK06372.1"
                     /translation="NKLYRKLKRKGIETKWTLYPGVDHNSWDLAFEEQELIPWLNQ"
     assembly_gap    10045..10204
                     /estimated_length=160
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10205..10962)
                     /locus_tag="DHV98_08515"
     CDS             complement(<10205..10962)
                     /locus_tag="DHV98_08515"
                     /inference="COORDINATES: protein motif:HMM:PF02230.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06373.1"
                     /translation="MPLKKLVPFFFNFQLKPIVGIEQSWWPSILQAQHRKMQKFIVFF
                     SLALCISPISSQAQTNQGSAITPLPFQLFLPKNEADPKRVDAIKNNALLVFLHGSGER
                     GSDNNAQLKHGAEFFKQLAQGHNTVVLVPQCPEDLSWHNGSSEITKSGRKYRYPKGLK
                     TNRVLDILEKLIDSVVIAQNIDKAKIKIGGLSMGGMGTLELLRRRPEYYQRAFVICGG
                     GNKALARQIGQTPIWFFHGEEDQVVLPKYANKLYR"
     gene            11041..12322
                     /locus_tag="DHV98_08520"
                     /pseudo
     CDS             11041..12322
                     /locus_tag="DHV98_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010517579.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
     assembly_gap    11292..11340
                     /estimated_length=49
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(12564..13325)
                     /locus_tag="DHV98_08525"
     CDS             complement(12564..13325)
                     /locus_tag="DHV98_08525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014998176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HCK06374.1"
                     /translation="MSYPEASKRLNKAISDSGYCSRRKADELIEQGVVTLNDQPMRLG
                     DRVMPGDVIKINGEVIGGPKSDVYLMLNKPVGITCTTDQRVKGNVVDFINFSERIFHV
                     GRLDKPSEGLLLMTNDGDIVNKILRAGNRHEKEYIVRVDRPISAEFIQRMSRGIPILD
                     TVTKPCEVQRVSRFVFKIILVQGLNRQIRRMCEYLNYEVVALKRVRIMTLTLGDLPTG
                     QWRHLTREEVAKLQESLTDSDNTPYSSSDLDQGFN"
     gene            complement(13322..>14729)
                     /locus_tag="DHV98_08530"
     CDS             complement(13322..>14729)
                     /locus_tag="DHV98_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014780853.1"
                     /note="The UvrABC repair system catalyzes the recognition
                     and processing of DNA lesions. The beta-hairpin of the
                     Uvr-B subunit is inserted between the strands, where it
                     probes for the presence of a lesion; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HCK06375.1"
                     /translation="SSDLIFPGYADEAFRIHFFGDEIEEIECFDPQSMRVLRSFDRVT
                     IYPANMFVTSQDVLQNAIKSIQDDLVAQIEYFKETGRHLEAKRLEERTNFDLEMIREL
                     GYCSGIENYSRYLDQRAPGTRPFCLLDYFPEDYLMVVDESHVSIPQVSAMYGGDRSRK
                     ENLVNYGFRLPAAMDNRPLKFEEFEALQNQVIYVSATPADYELERSGGVYVEQIIRPT
                     GLLDPPIDIRPSAHQIDNLLEEIQLRVDKDQRVLVTTLTKRMAEELTKYLTRIQIRCR
                     YIHSDVDTLERVEIMQDLRLGLFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSA
                     RSLTQTIGRAARHVDGLAILYADKITKSMQATIDAANYRREKQMAYNKAHGITPSPIK
                     KSLDNALTKRKTNDTPFSTPSVVTENEMAYLNKPEIQKKIRETRKLMEEAAKALDFMA
                     AAKHRDTLKVLQKHLSES"
BASE COUNT         4009 a         2997 c         3379 g         4058 t
ORIGIN      
        1 ggggctcgct gcaatgcgtg gtcagtggcc gaaggttaag gtgcttttgc ctcgtgagca
       61 aggctatatt gatcctgatg atattttacc ccaactttcg gatagccggg aaaactgggt
      121 ggttctggaa tcccgcaagc cggtaattat cagtaatgtc attggtgtgc tcaacgggat
      181 ggcctactat cagcaaaaaa atgaagaaaa tgacaccatc aaaaagacct atgatgtgcg
      241 cttatttacc agcgcaaaga atgagtcttt tgattttgac gacatttcta atattcatct
      301 ttctcatttg aaatttagtt atccgtcgtt aagcaggcct tatagtatcg gggaaactct
      361 cgagcccttt gttttgactt atctggaacg ctttggtacc acgccaaata aatatgccgc
      421 tcgtggtttt gatttaaccc tagacttgat tttgcgccag gcttcaacca atgggccgtt
      481 aactcaggca ctagtcatgc cagagacgac tcagtatacc gaaaataaat ttcgctacga
      541 attgggccct caaggcggtt atgagaataa agcattttat ttattgaaat acacccaaga
      601 tatgggtata gaagaattga taaattcatt gggtgctcgc aattaatatt ttatctttga
      661 atcccgtata ggtaacaaca agcacaccac atgaatacga caaagtatat cttcgttacg
      721 ggcggggttt catcatcttt aggaaaaggt attattgccg cctcactggc taagctattg
      781 caagccaggg gatttactgt gaccattcaa aaattggatc cctatatcaa tgttgatcct
      841 ggaacgctta atccctatga gcacggtgag tgctatgtta cagacgatgg tgcagaaact
      901 gatctcgatt taggtcatta cgaacgtttt ttaaatcacc cgacctcaca ggccaataat
      961 gtaaccaccg ggcgcatcta ccaaagtgtg atcgaaaagg aacgccgtgg agaattcctc
     1021 gggaaaacgg tgcaggttat tccgcacatc accaatgaaa ttaaagaacg aatccaacat
     1081 ttagggcagg atggtcgata tgacatcgtc attactgaaa ttgggggtac tgttggagac
     1141 atagagtcct tgccctatat tgaggccgta cgtcaattaa aatgggagtt aggcagacac
     1201 aatagcttat ttattcatct caccttgatc ccctatttgg cggctgcaag agagttaaaa
     1261 actaaaccaa cacagcactc ggtaaaaaca cttatggaga gtggaataca ggcagatgtg
     1321 ctggtttgtc gcacagaaca cgaactcagt gacgatctac gcactaagtt agccttgttc
     1381 tgtaatgtgg aaaaagaagc ggtaattcag tcaatcgatg ccaagaccat atacgatgtg
     1441 cccaatttga tgttggatga aggcttggac aaaattgcgc taaaaaaatt gcgcctcgag
     1501 tcaagccaag aacctaattt aactcaatgg aatgagtttt tatgccgtca caaaaatccc
     1561 aaaggagtgg tgaccatcgg tttgatcggt aaatacattg aattacaaga cagttataaa
     1621 tcaatcttag agtcatttat ccatgctgga gcggccaatg aagtctcggt tgaggttgtt
     1681 tcgattcatt cggagcacct aactcctgag aatgttgctg acgaagtagg ggctcttgat
     1741 gggcttcttg tggcgcctgg atttggcgag cgcggtatag aaggaaagat tgctgcggta
     1801 caatatgccc gaacacatga cattcctttc ctcggaattt gtttgggaat gcagatggct
     1861 gtgatcgaat atgcccgcaa tgtggttggc ttaaaaggag cgaacagcac tgaaatggat
     1921 gccaaaactc cctacccggt aattgattta atggaggccc aaaaatcagt tacagataaa
     1981 gggggaacca tgcgattagg ctcttgggct tgcaaaattg ttccagacag tatcgtcgga
     2041 tcgatatatc agtctgaaga aattcaagaa cgccatagac atcgatatga gtttaatgac
     2101 gattatcgca ctcaaattga ggatgcagga atgcgcgtca ctggagtgaa tccccaaacc
     2161 ggacttgttg agatcgtcga agttcctgag cacccatggt ttgtcggggt acaatatcac
     2221 cctgaatata agagtaccgt agccaatcca catcccctct tcgtgagatt tgtggccaag
     2281 gcatacgcac tttcaaaaaa taagaaataa aaggttcaac aagcgttgag tcgactttag
     2341 cattatggaa gaaaataaat ttgacctcaa tacattcatc gggtttatgc ttatcggggc
     2401 aatattgctt tggatgcttt atcaaaatca gcctactgag caagaactgc ttgcagaggc
     2461 cgccgcaatt gaacaggtcg cctcagagac taatcaggaa aacacaacgg cacaaaacga
     2521 ttcggcaaag cccataatca atgaagaggc cacgcaagag gaccttactg aacagactga
     2581 gcgtctgaaa aataaatttg gggattttgc ctatgcggcc acccagccct cttggactga
     2641 tcagaccacg gttctggaaa atgatctttt gtctttagtg atcagcaata aaggggggta
     2701 tattgtttcg gcagaattaa aaaacgagac gcaatatcaa ggggctccgg tttatttgat
     2761 taaagatgga aatagcggtt tggatctaaa attccaagca caaaacagac tgctttcgac
     2821 agctgagatg tatttcgagc ctcatttgac aaaagacggt gaagatcagg ttctttctat
     2881 gaagctaaaa acttcagagc aagactattt ggaatacatt tatcgcttac cggcttcgga
     2941 ttatatgctt ggttttgata tcgtcacacg cggccttgag gaggttatcg aatttaacca
     3001 gcccatagag ctcaattggt ctttaaaggg gtttcgtcag gccaaaagca ttagctatga
     3061 aaatcgttac acgcgtttga cctatgcgta cgacaacgga aatgagtttg ataaattggn
     3121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna
     3181 gtttgataaa ttgggccccg tggggtctga tgaggccagc gaacgcgatg taacctggat
     3241 caattttaga cagcattttt tcagcagtat gctgcttacg aatagtcctt ttcaagaggt
     3301 gggtctttac tcagatgatt tagtaaagga cgaaactatt gacactacct tcacaaaggc
     3361 ctatcgtgca aaggtgcaac tgacgccaaa gaataatcgt ttggaccaag ccatgagtct
     3421 ttactttggt cctacggatt ataaagtatt caagtcttat gataagaatt tggacgaggc
     3481 gatgccctta ggatggggca tttttggttg gataaacaaa tatgtcatct tcccggtctt
     3541 tggcttttta agccaatggt ttccagcggg aattgccatc atcctactca ccgtattttt
     3601 caaattattg ctctctccag tacaatacaa acaatatgtt tctcaagcga aactcaaagt
     3661 gttgaaacct gagatggatg aaatcaaaaa gaaatttgag ggcaatcaga tgaaaattca
     3721 gcaagagacc atgaaattgc aaaacaccgc gggtgcctct cctttaaagg gctgtcttcc
     3781 ggctctcttg cagattcctg tcttttacgc cttattcact tttttcccta cggcttatgt
     3841 tttgcgtcaa aaatcgtttt tatgggcgga tgatttgtcg agttacgatg tggtcttaga
     3901 attgccattt tctattccat tttacggaga tcacgttagt ttgtttccga ttctggcctc
     3961 gattgcaatc ttcttctaca tgatgatgag tacagggcag caaatgcaac aacagcaaca
     4021 accgggtatg ccaaacatga agtttttgat gtacctgtcc cctgtattta tgctggtctt
     4081 tttcaataac tacgccagtg gactctcctt gtattatttt acttccaatg taattaccat
     4141 tgggattatg ctggtgataa agaactttat catcgatgag gataaaatcc atgcaaaaat
     4201 tcaagagacc aaaaagaagc ctaaaaagca aaaccgtttt caaaagaaaa tggcagagat
     4261 gatggagcag gcagaggccc aaaagaaggc ccaacaaaag aaataacgcg cgacccaaga
     4321 agcgatttta tttggttcta tggatattaa acgacacatc tttatctgtg ttatggcatt
     4381 attggtcatg ggtggaagcg ctcaagccca agagcaggtc aatcaattgg accaaaacgg
     4441 cgcccgtcat ggtctctgga aaaagtatta tgaggggaca aaacagttgc gctatacggg
     4501 gacttttaac catggaattg aggtcggcgt atttaaatat tactgccaaa gctgcggaga
     4561 tcaggtggtc gttataagag actttgattc aattcctgga gcctgtgcgg ttacgtttta
     4621 tacagatcgt ggacaactcg tctctcaagg gcgtatgcaa gatcaaaagc gaataggtcc
     4681 ttgggttact tatcacaagg gcggaacgac catcatgacc aaagagcact acaaggacga
     4741 tttactcgat ggggtaaaaa atacgtatta ccctaatggg ctgctggcgg aatcttgtat
     4801 ttataagcaa ggattgcgtc aaggaaaatg ttcttattat gggcctggcg gacaaatcat
     4861 caagaccttt acttatgaca atgatcaatt gcatggtcct gcggagtttt atgatttgtc
     4921 aggaaatctg gagcgtacgg gaatttacag ccgtgataaa aaatctggaa tttggaaaac
     4981 ctatgtcaac ggggttgtaa ctcaagaaga agactttaat gatcaaaaac gatctcatga
     5041 gcgctagact aaataaacgt gtggttgttg ggctcagtgg cggcgttgat tcgagtgttg
     5101 ccgcttattt gcttaaagag caaggctatg aggtattggg cttatttatg aaaaactggc
     5161 acgatgacag cgtgacgatc tcaaatgaat gtccctggct cgaagacagt aatgatgcca
     5221 tgctcgtggc ccagaaactc ggtattcctt ttcagactgt tgatttaagt gcccagtaca
     5281 aggaacgcat cgttgactat atgtttcgtg aatatgaaat gggccgtacc cctaatcctg
     5341 atgtactgtg caatcgtgag ataaaatttg atgtcttttt ggaaattgct caaggactgg
     5401 gtgctgatta tgtcgcgacg ggacattatt gtcaaaagca gacttctgta attaatggaa
     5461 cccgggtgca tcatctcttg gcgggggcgg atgccaataa agaccaatcc tactttttgt
     5521 gtcaattaac tcaggatcag ctctcaaagg cgctttttcc gatcggacac cttcaaaaag
     5581 acgaggttcg ggttatcgcc aaagcacaag cgctcattac ggcagaaaaa cgagactctc
     5641 aaggcctatg ttttattggc aaggtccgat tacctgattt tttacaacag cagctcaaag
     5701 caaaaaaggg agcgatcatt gaaattcccg aggatagtgt actttaccaa aatggtcctg
     5761 aaaaccaggc gactcaagag caatggcatg aatattggcg cagaccattt cggtatgcac
     5821 ccaatgatgg aacagtcgtg ggaacccatc aaggggccca cttttttacc ataggtcaac
     5881 gcaagggatt agcggtaggg ggtaaagaag aacctctttt tgttttggcc acagatgtaa
     5941 tacaaaatat catttatgta ggtcagggaa aagcccatcc tggtttatgg cgtcgcggac
     6001 tgcgggttag tccaaatgaa gttcattgga taagacagga cctgcgcttg tctcccggtc
     6061 aggaactcga agtaaaggca cgcatcagat atcgtcaacc cttggaatct gcgcgattat
     6121 tccaaaagga ttccggtctt tatgttatct ttgagaaaga acagaccgcg atcagctctg
     6181 gacagttcgt agcttggtat cgagataatg aactcctggg cagtggcgta atcgaataaa
     6241 catgaaatac tttttgacct taatgggttt actggttggc ttatcaggaa aagcccaaat
     6301 tcaagatgcc tggatttatt tttcggacaa agaaaatgtg gaggcgtcca tcaataatcc
     6361 aataagcatc ttaacccaag aggctttgga tcgcaaagcc ctgcattctg tggtcatcga
     6421 cgcacgtgat gtccccgtga cagaggctta tatacaggag gtgaaaaata gccctggcat
     6481 cacttattgg gccaagtcaa aatggatgaa ttgtgtttat gttcagggta cggtcaatga
     6541 tcttgaagcc ttgcttgatt tgccctatgt ggtcggtatt gagtatgccg ataaagattt
     6601 aaatttccca aatccccagc cggttcctga caaatttaag gtacttgcag acccccagag
     6661 tcgtgtcgag tacaattacg gtgctgccgc aaaccaaatc gagatgattt ctggcgatta
     6721 tcttcatcag caagatttca ccggtgaggg gatgatcgtt gccgtcatgg attcgggctt
     6781 tccaaatttt actacgaacc caggttttgc gcatattgtc gataacggaa gactcctggg
     6841 gacttttgat ttttattcca gaacaactga tgtcaccggg acagggtcac atggaataca
     6901 aaccacaagt gatatcggag ggtatttaga caacctattt gcagggactg ctcctgatgc
     6961 ttctttttat ttattccgta cagaatatgg cccctctgaa aatccgcgtg aagaagcctg
     7021 gtgggtagaa gccttagagc gtgccgatag cttaggggtg gatgtggtca atacctcact
     7081 cggttatcaa gcctacgata atgccaatta tgaccacagt tatgaagatc ttgatggcgt
     7141 gaccaccttt gcagcccggg gagcgaattt ggcctatgaa aaaggcatgg ttttggtcac
     7201 ctctgccggg aatcaaggaa atagctttgg aacggttgcc acacctgcgg atgctcttgg
     7261 actattagcg gtcggtgctg taaataatct aggaaattat gtctcgttta gctctcgnnc
     7321 aagcctgatg ttatggccaa aggacagagt gccgcggtga tttcttcctc aggcgttgta
     7381 gacttcagca atggaacctc attcagttcg ccaataatcg ccggagcggt aagctgtctt
     7441 tggcaagcgt ttcccgaaac aacaaatgtt gaattaatgc aagtagtgcg cgagtcagcg
     7501 caccttttca ataatccgac gcctcagatg ggttatggga tacccaactt tgaattggca
     7561 tttaatacct tgtcattgct ctcccagaac gatcaccttc tcaagcgtca agccgcactg
     7621 tccccaaatc ctgtaaatga ttcctttagt gtgcttttgc ccccagaggt ggattacgcc
     7681 caactggaag tttacaatgt tttaggtcag tttgtagcgt ctttacaggt gcaagcttcc
     7741 caatcacaga tttcggttat ggattggaat aagggggctt atttaattaa attgatttta
     7801 ccttctggac aagtccaatc gttcaaattg atcaaggctt aaatgaaaaa tcgcgttacg
     7861 gaattattct cgatcaaata tcccattgtt caaggcggga tgatttggaa tagtggatgg
     7921 cgcctagcga gtgcggtaag taatgcgggg ggacttggat tgatcggtgc tggatcgatg
     7981 tacccggagg ttttaaaact gcatattgag cggtgtaagg ccgcaaccaa taaaccattt
     8041 ggcgtaaatg taccgctgtt atacccaaat atcgaggaga ttattgaact gattctagag
     8101 tttaatgtcc ccattgtatt tacctcagca gggaatccgg ccacgcatac cgcgcgactc
     8161 aaggcggcag gaattacggt ggctcacgtt gtgagcagta ctaaatttgc tctgaaagct
     8221 gaagcggctg gtgttgatgc tatcgtggca gaaggctttg aagcgggggg acatnnnnnn
     8281 nnnnnnnnng tcgcgctaca gatttgcccc tgattgctgc agggggcatc gccacaggtg
     8341 aggcgatgtt agccaccatg attttagggg cagatggggt tcaaatgggc agtcgttttg
     8401 tggcctcaga ggagagtagt ggacatcaat tgttcaaaga tcttgtggtc gctgctggcg
     8461 aaggcgccac agagttgacc cttaaagaat tgactccggt acgtctttta aaaaacaaat
     8521 tctatcaaga tttgcaggaa ctttatcagt ctggagcgtc aatagaggag ttgcgcgccc
     8581 atttagggcg ggcccgcgcg aagcgcggga tgtttgaagg agatctcgag gaaggtgaac
     8641 ttgaaatagg acaaatcgcc agcatgattg acgcggtgaa acccgtcgca tcgattgttg
     8701 aagaaattat ggcccaatat caccgggctc tagtgcactt accgtcccga tttagcttgg
     8761 atcagtaatt tgtgaagcct ccgcgctgtt tgtgcgagaa aagggagccc aatagagtcg
     8821 tattcataaa cattgtcatt gaatatttta ttttcgttaa ccagcagggt cgctcctaaa
     8881 atgtaattca agttgtgttt tttatccacg acataagcga tatcggtgag cgtgccataa
     8941 gcataaccca ctttgttatg caggtgcaat gcggggtcta tgcgctcatt tgagtccccg
     9001 agaaaaaaga atttgacata gccgtctgga tgctcagttt cgtcatagcc ttgttttctg
     9061 ggaacactca tcataatggt ttttacaaag gcttcagtat ttttggccca attgagcggt
     9121 gtgggaatat caaaacaatc aagcggatat aaacgctcca taaatttcat catgcttgaa
     9181 agtggaaaat aatttttgcg actaaaatct attggttttt caatcaatag gtcttcctgt
     9241 atatatccaa tgcccttttg cattcccgca acacccaaag aatctaacgg ttgatcgggc
     9301 cccgcttgga atgtatgggt cccctgagcg gtctcaaaaa aatacttcgg atgttcttgt
     9361 gccgcagcat cgctcacaga gagtcgatgc gccaagcgaa acgggccgat gttcaactcg
     9421 gccattctct ggttcacata atcccggcca agaagatcat agagccgatt aaacgcttga
     9481 ttatcactta cggcaaaaat atcgatgagg tcttgagcaa tgctgtggct tgtgctgtcg
     9541 ttttcgattc gataaggggt tatgatgcta atatctggtt gcagttccgt ccattgagcg
     9601 gcgaatattg ccacaggtaa ttttacagta ctcgctggat aaaagtattg tcccttgctg
     9661 taatccactg cgctgcgctg aagcccctga ggagccccct cattctcgct aacatgagca
     9721 gtatcctttg gaagaattaa ctcaatgtgt aattcatgat tttcagcttg cgccataacc
     9781 ctctggatgg cccaatcctc tcccttgagg gttttgagta aaacatctgc agtgtctttt
     9841 tgacctgggc tatgacatcc gcccataata atcatgaaca atcctaaaac ggcaagtcct
     9901 ttgcagtaag ggtttattga tttaaccatg gaattaattc ttgttcttca aaggctaaat
     9961 cccaactgtt atggtcgacc ccaggataaa gggtccactt tgtttctatg ccttttcttt
    10021 tgagttttcg atagagcttg ttggnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10201 nnnncgatag agcttgttgg cgtattttgg gagcacaact tgatcctcct ctccgtgaaa
    10261 aaaccaaatt ggcgtctgcc ctatttgacg agcgagcgct ttgttccccc cgccacagat
    10321 gacaaaggct cgttgataat actctggccg tctgcgcaat agttctaagg tgcccatacc
    10381 gcccatagag agtccgccaa tttttatttt agccttatcg atgttctgag cgatgaccac
    10441 actgtcgatt aatttctcta aaatatcgag cactctattg gttttgagtc ctttaggata
    10501 acggtacttt cttcccgatt ttgtgatttc gctcgatccg ttgtgccaac tcaggtcctc
    10561 aggacattga gggactaaaa ccacggtatt atggccttgc gctaattgtt tgaaaaactc
    10621 cgctccgtgt tttaattgtg cgttattgtc cgaaccacgc tcaccagaac catgtaaaaa
    10681 gaccaacagc gcgttatttt ttattgcgtc aacccgcttt gggtcagctt catttttggg
    10741 cagaaacaat tggaacggca atggtgtgat cgcagaaccc tggttggttt gcgcctgaga
    10801 gctaatgggt gaaatacaaa gggcaaggct aaaaaaaact ataaattttt gcatttttcg
    10861 gtgttgtgcc tgaagtatcg agggccacca ggactgctca atgccgacaa taggctttag
    10921 ctgaaaatta aagaaaaaag gtactaattt ttttaatggc attggcttaa aatgtcgccg
    10981 attgtcctgc tgtcaatatt acatttatta tttttgtcct gcgttataaa agacgaaagt
    11041 atgaacttac atgaatatca aggaaaggaa attttaaata gttttggtgt tgacatacag
    11101 cgcggaattg tggcacagac ttctgaggaa gcggttgcag cggcgaaaaa actcactgaa
    11161 gagacaggaa cttcttggca cgtaattaag gcccaagtgc atgccggagg ccgtggaaaa
    11221 ggcggtggag tgaagctcgc taaatctttg gaggatgtgg cacgcatttc tggggaaatc
    11281 atcggtatgc annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11341 ggaggacgtg gcacgtattt ctggtgaaat tatcggtatg caactcatta ccccgcaaac
    11401 ttctgctgag ggtaaaaccg tacaccaggt cctcgtagcc gaagatgttt attacccagg
    11461 agcgagtgag ccacaagaat tttacattag tgtcttactc aatagagcga caggacgcaa
    11521 tatgattatg tactccaccg aaggggggat ggatatcgaa acggttgctg aacaaacgcc
    11581 tgagttgatt tttacagaag agatcgatcc tgctgttggc cttcagggtt ttcaagccag
    11641 aaaaattgct tttaaccttg gcctgagtgg tcaagccttt aagcagatga ccaaatttgt
    11701 cgctgctcta tatcaagctt atgtcggaag tgatgcgtcg ctttttgaaa ttaatccagt
    11761 gcttaaaacc agtgatgatc gcgtgattgc ggttgatgct aaagtaacgc tagacgacaa
    11821 cgccttgttc cgtcacaaag attatgaagc gcttcgagat attcgtgaag aaaacccagt
    11881 agaagtagaa gctaaagctg taggtttaaa ttacgttgat ttagacggta acgtagggtg
    11941 tatggttaac ggcgcgggct tagctatggc gactatggat ttgattaagc aagcaggtgg
    12001 tgaaccggct aactttttag atgtcggagg tactgcagat gctgagcgtg tagaaaccgc
    12061 ctttaatttg atactaaaag accccaatgt taaggccatt ttggtcaaca tttttggagg
    12121 gattgtccgt tgtgatcgag tggcccaggg tattgtagat gcttataaaa atatggggac
    12181 cattgaagtg cctattattg taagattaca aggtaccaac gctgatattg ccaagaaatt
    12241 aatcgacgaa agtgggctcg atgttcattc agcgattgag tttcaagagg ctgctgataa
    12301 ggtacaagca gtactggctt aatcttggga atcttttaac gtccgttaac aattaattgg
    12361 caaaagacca ttgtttttgg cacgatattt tcaataacca agacaacaat agaagtgatg
    12421 tttcattgtt gttagttaaa ttggttagtt agttggaaaa accgcacgac gcatatgcag
    12481 actgcggttt ttttgtgttt gacgcgcccg atgcactgaa tcctcagggg gccttgctca
    12541 aagttatggt gctaattatt gttctaatta aaaccttgat ccaggtctga ggatgaatag
    12601 ggggtgttgt cagagtccgt taaactttcc tgaagtttag ccacttcctc acgggtcaga
    12661 tgccgccatt ggccggtagg taaatcacct agagttaatg tcataatccg tacgcgctta
    12721 agagcaacga cttcataatt cagatattcg cacatccgcc gaatttgtcg atttagcccc
    12781 tgaaccaaaa tgattttaaa tacaaagcga ctgacgcgct gaacctcaca aggtttggtc
    12841 actgtgtcca aaatgggaat ccctcgactc atgcgctgaa taaattcagc gctaatcggc
    12901 ctatcaacgc gaacaatata ttctttttca tgtcggtttc cagcgcgaag aattttgttg
    12961 acgatatcac cgtcgttagt catcaatagt aagccttcac tgggtttatc cagacgccct
    13021 acatgaaaaa tacgttccga gaaatttata aaatcgacga cattgccctt aactctttgg
    13081 tccgttgtac aggtaattcc gaccggtttg ttgagcatga gatagacgtc gctcttgggt
    13141 cctcctatga cttccccatt gatttttata acatcacccg gcataacacg atctcccaag
    13201 cgcataggtt gatcatttag ggtgactacg ccttgttcaa ttaattcatc ggccttgcgt
    13261 cgagagcagt agccgctatc gcttatcgct ttgtttaatc ttttcgaggc ttcaggataa
    13321 ctcatgattc ggataagtgt ttttgcaaga ctttcaaggt gtctctgtgt tttgctgcgg
    13381 ccataaaatc taaggcctta gccgcttctt ccatcaattt tctcgtctcg cgaatcttct
    13441 tttgaatttc aggcttattt aaataagcca tttcattttc cgtaacaacg ctaggcgtac
    13501 taaatggcgt gtcattggtt ttacgtttgg tcaatgcatt gtccaaactc ttttttatcg
    13561 gacttggcgt aatcccatga gctttgttat aggccatttg tttttcacgt cggtaattcg
    13621 cggcatcaat ggtcgcctgc atacttttag tgattttatc cgcgtaaaga atggctaatc
    13681 catcgacgtg tcgggcagcg cgccctatgg tctgggtcaa agaacgggca ctgcgcagaa
    13741 atccttcctt atctgcgtct aaaattgcca ctaacgaaac ttcgggcagg tcaaggcctt
    13801 cgcgcagtaa atttacgcct accaaaacat caaatagccc caatcgcaaa tcctgcataa
    13861 tttcaacccg ctctaaagtg tccacatcac tgtggatata tcggcaacgg atttgaatac
    13921 gcgttaaata tttcgtgagt tcctcagcca tacgtttggt taaggttgtg accaaaaccc
    13981 gttggtcttt gtccacgcgc aattgaattt cttcgagtaa attatcgatt tgatgggcac
    14041 tgggacgaat atcgattggg gggtctaaaa gccctgtggg ccttatgatt tgctcgacat
    14101 agacgccacc agagcgctct agttcgtaat ctgcgggggt ggcgctgacg taaataactt
    14161 ggttttgcag ggcctcaaat tcttcaaatt taagtgggcg gttatccatg gcggctggaa
    14221 gtctgaaccc gtaattgact aaattttctt tacgactgcg gtctccgcca tacatggcac
    14281 tgacttgagg tatgctcaca tggctttcat cgacgaccat taaatagtct tctggaaaat
    14341 aatccaaaag gcagaatggc cttgtcccag gagcacgttg atctaaatag cgcgaataat
    14401 tttcaattcc actgcaatac ccgagttctc gaatcatttc caagtcaaaa tttgttcgtt
    14461 cctcaagtcg ttttgcttct aaatgtcgtc cggtttcttt gaagtattca atttgtgcca
    14521 ccaaatcatc ttgtattgat tttatcgcat tttgaagaac atcttgagag gtgacaaaca
    14581 tattggccgg gtagatcgtc acacggtcaa agctgcgcaa gaccctcata ctttgggggt
    14641 caaagcattc aatttcttca atttcatctc cgaaaaaatg gatgcgaaag gcctcatcag
    14701 cataacccgg aaaaataaga tcggaagag
//
LOCUS       DPUP01000222            3166 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_25679,
            whole genome shotgun sequence.
ACCESSION   DPUP01000222 DPUP01000000
VERSION     DPUP01000222.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3166)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3166)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3166
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            1..1180
                     /locus_tag="DHV98_08535"
                     /pseudo
     CDS             1..1180
                     /locus_tag="DHV98_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781706.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing start and stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1501..2139
                     /locus_tag="DHV98_08540"
     CDS             1501..2139
                     /locus_tag="DHV98_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HCK06376.1"
                     /translation="MQWFKIPFWLPWLMPSRLWRGPKYDPQGQACIYLTFDDGPIPEV
                     TPWVLDQLDAYGAKATFFCIGENTQRHSDILQDIVRRGHLVGNHTQSHCKGTRTSTQN
                     YLSQVRQFEQATGLKSKLFRPPYGRLTADQASGLTKLGYRIVMWDVLSYDWQKERSAE
                     LILSKLKRYISPGSIVVFHDSLKAEKNLRAVLPKILEHINNKGITMALLSQD"
     gene            complement(2136..2432)
                     /locus_tag="DHV98_08545"
     CDS             complement(2136..2432)
                     /locus_tag="DHV98_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductase thioredoxin"
                     /protein_id="HCK06377.1"
                     /translation="MSKFGEIIETPVPVLLDFYADWDQACQEMHAVLRDVAAALGDKA
                     KVIKIDVEKNEELSEALRVKGLPTLMIYKNGEMKWRKSGEQDANTLIGLVKEYL"
     gene            complement(2478..>2661)
                     /locus_tag="DHV98_08550"
     CDS             complement(2478..>2661)
                     /locus_tag="DHV98_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008611812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HCK06378.1"
                     /translation="PGLIKWSPVQYRYPFWAGIYKRNNKFLNVNRGFGFIGYPGRVGI
                     KPEVSVIQLKKAVKSA"
     assembly_gap    2662..2793
                     /estimated_length=132
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2794..>3166)
                     /locus_tag="DHV98_08555"
     CDS             complement(<2794..>3166)
                     /locus_tag="DHV98_08555"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoesterase"
                     /protein_id="HCK06379.1"
                     /translation="VLGSLSAPDGIYSVLGNHDYGDYVSWASVEEKQANLNDLKERQA
                     KMGWQLLLNEHISIKRDGQEFSLIGVENWGVGGFKKSGDVQAATQGIDPESFKILMSH
                     DPSHWEHQIKDHPMKVHLTLSG"
BASE COUNT          878 a          687 c          660 g          809 t
ORIGIN      
        1 ttatgcctta attgattggc tgcaacaaag ttctttgaaa aagttgagcc tccccgttgg
       61 gctaggcctt gcgatgcttg cgggacccgt tcttttagcg acgcaaaact gggacgatca
      121 cgatcgctca ggacgttaca cggcaaacgc tatggggaaa atgtatttgg actcctgtga
      181 tcccaatgca ctgctgttta ccattgggga caatgatact tttgccctat ggtatcagca
      241 aaatatcgaa cattaccgcc aagacgtgcg tattatcaat accagtttat tccaaacgga
      301 ttggtatatc gatgatatga aaaaacaagc ctttaccagt gcgccaatac cctcacaact
      361 caagcacgag caatatcgct atggcgtgcg ggatgtaatc gcctatcaag aaacggttcg
      421 tgataccgtc gatataaaaa cctggatgaa cttcgttgca agcgaggatc agcgctttaa
      481 agtagaactc aatagcggac aattcatcaa tgccttcccg gccaaagtcg ttcgaattcc
      541 tgtggacaag gaagccgtgc tgcgcaatgg tattgttgct gccaaagacg ccgatttgat
      601 cgtcccttat atcgacattg aactcaaggg agatttcatt tataaaaacc gcttgttgat
      661 gctcgatatt atcgctaata acaattggga acggcccgtt tactttagcg gtggggcttt
      721 tggcgacgat gattatctct ggatgaagga ctatcttcaa ctcgatggaa tggtctacaa
      781 actcgttcca attaagacac ctatcgaccc tagaaaccct tatgaaatgg gccgcgtaga
      841 cgcagagaaa atgtatgata tcgtcatgtc ttgggactgg ggcaacagcg gagatcctga
      901 aattaatcac gacaccgaaa cccgaagaaa tgggatcacc tatcgcagta atttggcccg
      961 actggctgat gaactcgtgc gacaaaagga ttacaaaaag gcggaagaag tcttggactt
     1021 ggccatggaa aaaatgccgg ttaatctatt tgaatattat tctttgttgg atccttttgt
     1081 ttggaattat tacgtgattg acaaagcaga gaaagcgcgt caagtctttg aacaaacggc
     1141 tcaaattcat cgagaatatc tggattatta cgcttcgttg gacctcacaa atcaattaga
     1201 gaatctcgag gagatttaca gtaagatgaa tcaatacgaa ggtttggtgc tctttgtcta
     1261 tgcctatgat gagcccgcgt attatatgga aacacgccaa agattcgtgg atgatgtggc
     1321 ccaatttaaa gccctgtttg agcgcgtagg tgttgatatc gaaaaggaat ttttacgcac
     1381 aaaacctcga gaatccgctc aggatttaga ttcagaagaa aattccatgt tagatcctga
     1441 aatgagccca gatgctggat cagagatgag tactgaaaac tccatgccat aaagggccca
     1501 atgcaatggt ttaagatacc tttttggctt ccatggttaa tgccgtcacg tctttggcgc
     1561 ggcccgaagt atgaccctca aggccaagcg tgcatttacc tcacttttga tgacggcccc
     1621 atccccgaag tgaccccgtg ggtcctagat caacttgacg cttatggcgc taaagcgacg
     1681 tttttttgta tcggagaaaa cacccagcgt cattcagata ttctgcagga catcgtaaga
     1741 aggggacatc tagtggggaa ccacacccaa tcacattgta agggaacgag gacctcaacc
     1801 caaaattact tgagccaggt gcgccaattt gaacaagcaa caggactcaa aagcaaacta
     1861 tttcgccccc catatggacg gctaaccgca gatcaagcct ctggtttaac aaaacttggg
     1921 taccgcattg tcatgtggga tgtgctgagc tatgactggc aaaaagaacg ttcagctgaa
     1981 ctcattttga gtaaactcaa aaggtatata agcccgggaa gtatcgtcgt ctttcatgat
     2041 agcctcaaag cagaaaaaaa tctacgcgca gtattgccca aaatactcga gcacatcaat
     2101 aataaaggaa taacaatggc cttgttaagt caagactaaa gatactcttt aaccaaaccg
     2161 atcaaagtat tggcgtcttg ttctccactt ttacgccatt tcatttcccc attcttgtag
     2221 atcataaggg taggcaggcc ttttacacga agggcttcag agagctcttc gtttttttca
     2281 acatcaattt tgatgacttt ggccttatct ccaagtgccg cagcaacatc tcttaagacc
     2341 gcgtgcattt cttgacaggc ttggtcccaa tctgcataga agtcaagcag tacaggaacc
     2401 ggagtctcaa taatttcacc aaattttgac ataatcgtta gtgataaatt tgttacaaag
     2461 atagcatttc cagcgaatta ggctgatttt acggcttttt tcaattgaat cacactcacc
     2521 tctggtttga ttccaacgcg acccggatat ccgatgaacc caaaacctct attgacattg
     2581 aggaatttat tgttgcgctt gtaaatcccc gcccaaaatg ggtaacgata ctgaacaggg
     2641 ctccatttaa taaggccagg annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngcccgag agcgtaagat gaaccttcat
     2821 tgggtgatct ttgatttgat gctcccagtg cgatggatca tgcgacatga gaattttaaa
     2881 tgattccgga tcgatcccct gggtcgctgc ttgaacatct cccgactttt taaatccgcc
     2941 aaccccccaa ttctcaacac cgataagtga gaattcttga ccgtcgcgtt tgattgagat
     3001 gtgctcattg agtaataatt gccagcccat tttggcttga cgctctttaa ggtcatttaa
     3061 attagcctgt ttttcctcta cactcgccca agacacgtaa tcgccataat catggtttcc
     3121 aaggaccgaa taaataccat caggcgctga aagacttcct agaacc
//
LOCUS       DPUP01000223            5201 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10151,
            whole genome shotgun sequence.
ACCESSION   DPUP01000223 DPUP01000000
VERSION     DPUP01000223.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5201)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5201)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5201
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1411)
                     /locus_tag="DHV98_08560"
     CDS             complement(<1..1411)
                     /locus_tag="DHV98_08560"
                     /inference="COORDINATES: protein motif:HMM:PF00311.15"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HCK06380.1"
                     /translation="MKYTKEERFQKHVLSKYQIYNSIFMTLPFDSITKTGVLLPLFEE
                     LCVSGYEQAKNPTEIIHEFYQQYRPEFDEKQQINLLFSFIQYIERQVVLFDAIEEATF
                     SIINNTEGRGTLRSIKDEAHEKNKREALKDYLKRFKVRPVLTAHPTQFYPGSVLGIIT
                     DLAKSIEKNKLDEIELLLAQLGKTPFFKKSKPSPFDEAVSLIWYLEHVFYQAAHNIYR
                     FTKTHIFDGEQLPNELINLGFWPGGDRDGNPFVTAEITLEVAARLRLSLMKNYYKDVR
                     KMKRRITFNHAEPLVLALEEKLAAELNPSFTVAGDRTPEFLKDLTSLKEILETQHEGL
                     FVNLVDELIEKMNLFGCYFASLDIRQDSRIHTKAIMAIAQAYPEIIPMNYPHLDAQQK
                     IDLLGGLRGKVAVDKINDGMGQQTLASIYAMKSIQKKNGAKACERYIISNNGSVVNVM
                     EAFAMIRLCDWERSEEHTSE"
     gene            complement(1454..2881)
                     /locus_tag="DHV98_08565"
     CDS             complement(1454..2881)
                     /locus_tag="DHV98_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HCK06381.1"
                     /translation="MKQLLALALGPILAVSILLLPEPLFNPIMDKIFAASLWMVIWWI
                     TEAVSISITALLPIVIFPLLGVGTIGQVTVHYANPIVFLFFGGFVIALALEKVALHKR
                     MALHILRLTGPKANGVIFGFMLATALLSMWISNTASTVVMLPMALSVYKLVKKKTQKN
                     KKKLQRFAVSLMLGIAAAANIGGMATLIGTPPNSVMLAFLNEQYQLDIGFFQWMTFGV
                     PLSALLLAVAYWIIVRWAYPSGLGLLDSAHDIIEDELHALGPIKRKERTVLALFLMTV
                     LGWVIRGQINALWPNLSLTDTHIAMLGALALFVVPVQKGTKPCVLQWEDTAKLPWGIL
                     ILFGGGLALANALAQGGFIDAIQAFISQQDQWSPVLILIALVTLVLFLTELMSNVALV
                     TVFLPVIAGIALGLDQPLMAMVIPVTLASSCAFMLPMATPPNAIVFASGHVSVSQMVR
                     SGFWLNLMSLIVILLTNYFLLPLIF"
     gene            complement(2904..3758)
                     /locus_tag="DHV98_08570"
     CDS             complement(2904..3758)
                     /locus_tag="DHV98_08570"
                     /inference="COORDINATES: protein motif:HMM:PF00593.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06382.1"
                     /translation="MTRVFTHYXAELNTEAVTGSFGLVFKPSRFWNLRANMATAFRAP
                     NVDDIGKVFDSEPGAVVVPNPDLVPEYAVSWDLGIAHMLHKKLKVDLSGYYTRLDNAL
                     TRRDFTVNGASEIVYDGVLSRVQAIQNAAEAQVYGIHTGIELKLPSGFELTTDLNWQK
                     GTEEMDDGSSSPARHAAPWFGATRLWFRAENLVIQGYSQYSGGLSHNQLAVEEQLKTE
                     IYALDAQGNPYAPAWQTFNLKAQYSIDAHIELIAGVENITDQRYRTYSSGISAAGRNL
                     ILALRAQI"
     gene            complement(3682..4170)
                     /locus_tag="DHV98_08575"
     CDS             complement(3682..4170)
                     /locus_tag="DHV98_08575"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06383.1"
                     /translation="MKQFTANHTRAQGIFSEMTLRLAQQDFEESRISRGFNDPIQENR
                     SEAVVAYSANLDLRKSIGDKGELFYGLEWVLDQVTSTGIEKNIQSNTSAPGPSRYPQA
                     DWQSYAAYLSYQHQWTSKLMSQAGLRYNGIDLKAAFDTSFYPLXGRAQYRGCDRKLWP
                     CV"
     assembly_gap    4178..4290
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4291..5184)
                     /locus_tag="DHV98_08580"
     CDS             complement(<4291..5184)
                     /locus_tag="DHV98_08580"
                     /inference="COORDINATES: protein motif:HMM:PF07715.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06384.1"
                     /translation="MFRATEIDSIKKDYWTQLDSTDTELEQVVISATKWRQSRDKSPL
                     KVISVKSADIVLQNPQTAADLLGNSGAVFIQKSQQGGGSPMIRGFAANRLIYTVDGVR
                     MNTAIFRGGNLQNVISLDALSLESAEVLLGPDAVVYGSDAIGGVMSFETLGPKFSDNE
                     QLSVSASGLTRMASANFERTAHADLQIGRQKWALTSSFTRTNFGDLRQGNHGPEDYLR
                     PFYVTHYNGQDLITPNSNPNRQTPSGYNQSNFMQKVFYRPNTQWNLSLAYHHSATSAY
                     SRYDRQLRTKNDLPRYGQWDYG"
BASE COUNT         1392 a         1113 c         1190 g         1391 t
ORIGIN      
        1 gttcagacgt gtgctcttcc gatctttccc agtcgcataa tcgaatcatt gcgaaggctt
       61 ccataacatt gacaacactg ccattattgc taatgatata gcgttcgcaa gccttagcgc
      121 cattcttttt ttggatgctt ttcatggcat aaattgaggc caaggtctgc tggcccatgc
      181 cgtcattaat tttatcgacc gctaccttac cgcgtaatcc gccgagcaaa tcaatttttt
      241 gctgggcatc gagatgcggg taattcattg ggatgatttc cgggtaggct tgagcaatag
      301 ccatgattgc cttagtgtgt atgcgtgaat cttggcgaat atctaaagag gcaaaataac
      361 atccaaaaag gttcattttt tcaatgagct cgtcaactaa atttacaaaa agtccttcgt
      421 gctgcgtctc taaaatttcc ttcaaggacg ttaggtcttt gagaaattca ggggtacgat
      481 cacccgctac ggtaaagctc gggttgagtt cagcagccag tttttcttcg agggctaata
      541 cgagtggttc ggcgtgatta aaggtgattc ggcgcttcat tttgcgcacg tctttataat
      601 aatttttcat taaagaaaga cgaagtctcg cggcgacttc cagcgttatt tctgccgtaa
      661 caaacggatt accgtcgcgg tctccaccgg gccaaaatcc gagattaatg agttcgtttg
      721 gcagttgttc tccgtcaaaa atgtgggttt ttgtaaatcg ataaatatta tgtgctgctt
      781 gataaaagac atgctccaga taccatatta aactcacagc ttcatcaaaa ggactgggtt
      841 tggatttttt gaaaaagggt gttttgccaa gttgtgccaa gagtaattct atttcgtcga
      901 gtttattttt ctcaatagat tttgccaaat ccgtaatgat tcccaaaaca gagcctggat
      961 aaaactgggt ggggtgggcg gtaagtacag gacggacttt aaagcgctta aggtagtcct
     1021 ttagggcttc gcgcttattt ttctcgtgcg cctcatcttt gatactgcgc aaggttcctc
     1081 ggccttcagt gttattgatg atggaaaatg ttgcttcttc aatcgcatca aagagaacga
     1141 cctgacgttc gatgtattga ataaagctaa agagaaggtt aatttgttgc ttttcatcaa
     1201 attctggtcg gtattgctga tagaattcat ggatgatttc agtggggttt ttcgcttgtt
     1261 catagccaga aacacagagc tcttcaaata agggcaaaag gaccccggtc ttggtgattg
     1321 aatcaaaggg gagggtcata aaaatgctgt tgtaaatctg atatttagac agcacgtgtt
     1381 tttgaaatct ttcttccttg gtgtatttca tagcattgaa atgaaagcca aagttacgga
     1441 gagataaaga tttttagaaa attaaaggca ataagaaata attagtaagc aagataacga
     1501 tcaaggacat gaggtttagc cagaatcccg aacggaccat ctgtgaaaca ctaacgtgac
     1561 cgctggcaaa cactatggcg tttgggggtg ttgccatggg caacataaac gcacaactcg
     1621 acgcaagggt aacgggaatg accatagcca tgagcggctg atccaagcca agagcaatcc
     1681 ctgcgataac gggtaaaaaa acggtaacca aagcgacatt gctcatgagt tcggttaaaa
     1741 ataatacgag cgtaaccagt gcaatgagga tcaaaactgg agaccattga tcttgctggc
     1801 ttataaaggc ttgtatggca tcgataaaac ctccttgcgc taaggcgttg gctagagcca
     1861 gtccccctcc aaacagaatc aaaatacccc aagggagttt agccgtatct tcccattgga
     1921 ggacacaggg ctttgttcct ttttggacgg gtacgacaaa aagtgctagg gcgccgagca
     1981 tggcgatatg ggtatcggtg agggacaaat tcggccacaa tgcattgatt tgccctctaa
     2041 tcacccaacc aagaaccgtc attaaaaaca aagcgagcac agttctttct ttgcgcttta
     2101 ttggccctag ggcatggagt tcgtcctcga tgatgtcgtg ggcgctgtcc aaaagtccca
     2161 ggccacttgg gtatgcccaa cggacgatta tccaatacgc caccgcaagg agtagcgctg
     2221 acaaagggac cccaaaggtc atccattgaa aaaatccaat gtctagttgg tattgttcat
     2281 tcaaaaaagc gagcatcacg ctgtttggcg gggtgccaat taatgtggcc attcccccga
     2341 tattcgccgc tgctgcgata ccgagcataa gactcacggc aaatcgctga agctttttct
     2401 tattcttttg cgttttcttt ttgaccagtt tataaacaga cagggccata ggaagcatca
     2461 ctacagtact ggccgtattg gaaatccaca tggagagtag tgcagttgcc agcataaatc
     2521 caaatatcac tccgtttgct ttgggcccgg taagccttaa gatatgtaag gccatgcgtt
     2581 tgtgtaaagc cactttttcc aaggccagtg cgatgacaaa tccgccaaaa aaaagaaaca
     2641 ctatgggatt ggcgtaatga acggtcacct gaccaatcgt accaacgccc agcaaaggga
     2701 aaattactat aggcaaaagc gcagtaatgg aaatagagac ggcctcagta atccaccaaa
     2761 taaccatcca aaggctggct gcaaaaatct tatccattat tggattaaat agcggctctg
     2821 gcaacaaaag aatagacact gccagtattg ggcctaacgc caaggcgaga agttgtttca
     2881 tcaccccaat ttaagcaatg aaattaaatt tgggcgcgta aggctaaaat taggttgcga
     2941 cctgctgctg aaataccaga actataggtg cgataccgtt gatcggtgat gttttctacc
     3001 ccagcgatca actcaatgtg tgcatctatg gaatattgag ccttaagatt gaacgtctgc
     3061 caggcagggg catatggatt gccctgagca tccagggcgt atatttctgt ttttaattgt
     3121 tcttctacag ccaattgatt atgactcaat ccgccactgt actgagaata gccctgaatc
     3181 acgagatttt cggcacgaaa ccataagcgt gtggcgccaa accaaggggc cgcatgccgc
     3241 gcagggctgc tagagccatc atccatttct tcagttccct tttgccagtt taaatcagta
     3301 gtgagttcaa agcctgaagg taatttgagt tcaatgccgg tgtgaatacc ataaacttgg
     3361 gcttcggctg cattttgaat tgcttgaacc cgactcaata cgccatcata gacaatttcg
     3421 gaagcgccat ttacggtaaa atctcttcgc gtgagggcgt tgtctaaccg cgtgtagtag
     3481 ccgctgaggt cgactttcaa ttttttatgg agcatatggg cgatccctaa atcccaacta
     3541 acggcatatt cagggacgag atctggattt ggaacgacga ccgcaccagg ttctgaatca
     3601 aagacctttc caatatcatc cacattgggc gctctaaagg cagtggccat attggcgcgc
     3661 aagttccaaa acctggaggg cttaaacaca aggccaaagc ttcctgtcac agcctctgta
     3721 ttgagctctg ccnngtaatg ggtaaaaact cgtgtcaaag gcggccttta aatcaatgcc
     3781 attataacgc agtccagctt gagacatgag ttttgaggtc cattggtgct gatacgaaag
     3841 gtaagcggca taggattgcc aatctgcttg ggggtaacga gaaggccctg gggcactggt
     3901 attggactga atatttttct ctattccagt ggaggttacc tggtctaaaa cccattccaa
     3961 tccataaaat aattctcctt tgtcccctat tgatttacgc agatctaaat ttgcagaata
     4021 ggccacaaca gcctctgatc gattttcttg tatggggtca ttgaagcctc gactaattcg
     4081 gctttcttca aagtcttgct gcgctaatcg caaagtcatt tcagaaaaaa taccctgagc
     4141 cctagtgtgg ttggcggtga attgtttcat ggcccatnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gccataatcc cattgaccat agcgcggcag
     4321 atcatttttt gttctgagct gtcgatcgta acggctgtag gcagaagttg ctgaatgatg
     4381 ataggccaga cttaaattcc attgggtatt gggtcgataa aatacctttt gcatgaaatt
     4441 actttgatta tatcccgagg gggtctgtcg gtttggattt gaatttggtg tgataaggtc
     4501 ttgaccattg taatgggtta cataaaaggg ccgtaaataa tcttcaggcc cgtgatttcc
     4561 ttgacgcaga tcgccaaaat tagtccgtgt gaagctcgag gttaaagccc acttttgtcg
     4621 ccctatttga agatccgcat gggccgttcg ctcaaaatta gctgaagcca tgcgggtcag
     4681 gccactggcc gagacagaca attgttcgtt gtctgagaat tttggaccga gggtttcaaa
     4741 actcataacc ccgccaatgg cgtcgctgcc atagacgacc gcatcaggcc ctaataaaac
     4801 ttctgcgctt tctaaagaaa gggcatctaa agaaatgaca ttttgaagat tgccccccct
     4861 aaaaatggcg gtgttcatcc gcacgccgtc tacggtatag atcaatcgat tagcggcaaa
     4921 accgcgaatc atagggctgc cgcccccttg ttggcttttt tgaataaata cagcgcctga
     4981 attgccgagt aaatcagctg cggtctgggg gttttgcaag acaatatctg ctgacttaac
     5041 gctgattacc tttagcgggc ttttatccct ggattgacgc cacttagtgg ctgagataac
     5101 gacttgctcg agttctgtgt ccgtactgtc gagttgggtc caataatcct tcttaatgct
     5161 gtctatttcg gtagcccgaa acaaatgaat ttcagcggaa t
//
LOCUS       DPUP01000224            9894 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1081,
            whole genome shotgun sequence.
ACCESSION   DPUP01000224 DPUP01000000
VERSION     DPUP01000224.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9894)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9894)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9894
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..563)
                     /locus_tag="DHV98_08585"
     CDS             complement(<1..563)
                     /locus_tag="DHV98_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013620622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HCK06385.1"
                     /translation="MAQVKGKVAQIIGPVVDVAFDSGVSLPKIYDSLEVQNNGQTLVL
                     EVQSHIGENAVRTISMDSTDGLSRGTDAVVTGAPIQMPIGDDIYGRLFNVIGDAIDGL
                     GNLPKTGENGLPIHRESPRFEDLSTSTEVLFTGIKVIDLIEPYAKGGKIGLFGGAGVG
                     KTVLIQELINNIAKGHGGLSVFAGVGER"
     gene            complement(749..2533)
                     /locus_tag="DHV98_08590"
     CDS             complement(749..2533)
                     /locus_tag="DHV98_08590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013549954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G-D-S-L family lipolytic protein"
                     /protein_id="HCK06386.1"
                     /translation="MKMNFKYLGFALLALGIVSCESDDMTETAAPEQTVALTAGDADF
                     SNYVALGASFTAGFTDGALFKAAQTNSFPNTLATQFAAAGGGDFNQPMMTDNVGGLLY
                     GGNRIANPRLYFNGSGPAVLEANPTTEVTNVVAGVFNNMGVPGAKSFHFLANGYGNLA
                     GVPLGLANPYFARMASSANASMLEDAVAQNPTFFTLSEFGGNDVLGYATSGGSGVDQT
                     GNLDPTTYGGNDITDPNVFAAALSATLDALTANGAKGVVGNVPYVTSLPYFTTVPYAP
                     LDPSNPDFGPQIPLLNETFGPLNQVFDALGMPERKIIFSEDMASAVVIMDESLPNIVD
                     QLSAILQSQGYPEAFANLLATQFGQSRQANEADLMVLTSSTYIATVDTNYAASIYPAV
                     YEGVYAQVYAQAYAGVYAAAYDIAFQAAIDLGFDEAQAAVFADEQATAAATLQAPVIA
                     EQESPAIAQQQAGQLSVNGITKPLADQWVLTGTETQSVLNATDAYNATIDALVTAKGL
                     ARVDLKGILQNASSGGVQFDGFTMSTDLVFGGLASLDGVHLTARGYALMANEFLAAID
                     ATYGSNFIEAGQRARANDFPVNYAPELQ"
     gene            complement(2539..5427)
                     /locus_tag="DHV98_08595"
                     /pseudo
     CDS             complement(2539..5427)
                     /locus_tag="DHV98_08595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008270234.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    3031..3112
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(5653..6587)
                     /locus_tag="DHV98_08600"
                     /pseudo
     CDS             complement(5653..6587)
                     /locus_tag="DHV98_08600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009194995.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase IV"
     assembly_gap    6302..6344
                     /estimated_length=43
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6571..7230)
                     /locus_tag="DHV98_08605"
     CDS             complement(6571..7230)
                     /locus_tag="DHV98_08605"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06387.1"
                     /translation="MDEPFYAYYLAHVQDREEHPMEREILATMPTEHDQVLDQIYQAV
                     SEQNVFVKNMAHHCLEREPFYMKDWQNVILIRHPKKLLQSFAKVIEHPDLDAIGIKRA
                     FELMEFFDGHHIAYTVIESDQLMIDPPQYLQQLCEALNIPFSKQMGQWPSGPNAADGI
                     WAPHWYKNVHNSTGFDRPKSASNIFWNDHLESVFQEALPFYHKLQQKVLLNKSHHVTK
                     I"
     gene            7404..8555
                     /locus_tag="DHV98_08610"
     CDS             7404..8555
                     /locus_tag="DHV98_08610"
                     /inference="COORDINATES: protein motif:HMM:TIGR00045"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HCK06388.1"
                     /translation="MSTKVLIVCDSFKESLVASDVAKAIARGIGAADAAARCTLMPFS
                     DGGEGAIEVLEQNLNTRSSPGGHRVTCSTQDALGRPISAEYFRFKQRPAAWIELSAAS
                     GIHLIEPEARDPKITSTYGTGLLIKHAIEQGATEIILGIGGSATNDAGAGIIQALGGK
                     LLDEHGTELTRGGAALQGLTALVPPEGLHSIKWHIACDVNNPLVGAHGASHTYGPQKG
                     ASQNDIACLESALTHFAQKIKDTHGVSIETIAGGGAAGGTAAGLHGLFKAELISGFEL
                     LCKMTSLEEKIKACDVIITAEGRIDHQSLTGKVPISVAQLGKKHRKPVIGVAGSIEPP
                     YQAYGKAGLSSLFSIQDGPMTLEDSKRNTARLIEDTLYRVWSLYKNTRQ"
     gene            8552..>9180
                     /locus_tag="DHV98_08615"
     CDS             8552..>9180
                     /locus_tag="DHV98_08615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008866179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HCK06389.1"
                     /translation="MTWTLTLLLIAVVWIIIGTTKLKLHPFFVLLYAAIGLGILADIP
                     TNTLIPLITKGFGKTFESIGLLIVFGTLIGVYLEQSGATQSIAQSLLKRLSKLPLPYA
                     ISAIGYIVAIPVFCDSAFVILSALNKTLAQKSKTPRIALTIALSTGLFAPHVLVPPTP
                     GPLAAAAQLELQNLLLLILFGGLVAFLLVLVGAIYAQYLAKKYKATTSF"
     assembly_gap    9181..9229
                     /estimated_length=49
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <9230..>9894
                     /locus_tag="DHV98_08620"
     CDS             <9230..>9894
                     /locus_tag="DHV98_08620"
                     /inference="COORDINATES: protein motif:HMM:PF02447.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HCK06390.1"
                     /translation="KKYKAATSFQEEYNPTTVDQEQFSPNNLPNIYQSLSPIVVPILL
                     MATGSIVQFISPNLGAFKNMITLIGSPEAALFIGVLLAMRLNSKKQNKGDQSKRNLLE
                     GGLKLAAPILLITAMGGALGGIIKELPLTQYLSAYTSLQQFGLILPFGIAALLKTAQG
                     SSTVAIITTASIIFPILGQLGMISELDKVWVIIAIGTGSMTVSHANDSYFWIVSQMGG
                     IDV"
BASE COUNT         2726 a         2321 c         2039 g         2634 t
ORIGIN      
        1 cgctctccta caccagcaaa tacagataaa cctccgtgtc ctttggcaat gttgttgata
       61 agctcttgaa taagtacggt cttccctaca ccagcgccac caaatagacc aatctttcct
      121 cctttggcat aaggctcgat caaatcaata accttgatcc ctgtaaagag tacttctgta
      181 gaggtcgata gatcttcaaa tctcggcgat tcacggtgaa ttggcaaacc attctcacca
      241 gtcttaggca aatttccaag accatcaatt gcgtctccaa ttacattaaa aagacgcccg
      301 tatatatcat caccaatagg catttgaatt ggggctcctg taactacagc gtcagttccg
      361 cgactcaatc catcagtcga gtccatagag atcgtacgca cggcgttttc accgatatga
      421 gactgtacct caagaacaag ggtttgtcca ttattttgaa cctcgaggga atcgtagatt
      481 ttaggaagcg atacaccgct atcgaaagca acgtccacta cgggaccaat gatttgcgca
      541 actttacctt taacttgtgc cattagaata ttttttattc gtttgtttgg gccattttat
      601 gcccttaaaa atcggtgcaa agatatggct ttctgaagaa aaaaaacaaa ggaaataagc
      661 aaataaacta cgggttcaaa cccataaaaa ataatatgcc cctacagaag gaactgcagg
      721 ggcataatca accttattta aggcttaatt attgtaactc aggagcgtag ttcactggga
      781 agtcgtttgc acgagcacgt tgacctgcct caataaaatt tgatccgtat gtcgcgtcaa
      841 ttgcggccaa aaactcattg gccattagcg cgtatccacg agcggttagg tgaacgccat
      901 ccaaactggc caaaccacca aaaacgaggt ctgtagacat agtgaagcca tcaaattgaa
      961 ctcctccaga tgaggcgttt tgaagaattc cttttaagtc gaccctagca agtcctttgg
     1021 cggtaaccaa ggcgtcaatc gttgcattat aggcatctgt agcattcaat acagactgag
     1081 tttcagttcc tgtaagcacc cactggtccg caagtggctt cgtgattccg ttaactgata
     1141 gctgtcctgc ttgctgctgc gcaattgcag ggctctcttg ttcagcgata actggcgctt
     1201 gaagcgtcgc cgcagctgtt gcttgttcat cagcgaatac tgccgcttga gcttcatcaa
     1261 atccaagatc aattgccgcc tggaaggcaa tatcgtaggc agcagcatat acccctgcat
     1321 aagcctgagc ataaacttga gcgtaaaccc cttcataaac tgcggggtaa attgaagctg
     1381 cataatttgt atctacagta gcgatgtaag tggaactggt caagaccatt aagtctgctt
     1441 cattcgcctg tcgggattga ccaaattgag tggccaataa atttgcaaaa gcctctgggt
     1501 aaccttgaga ctgtaaaata gcagatagct gatcaacaat attgggcaag ctctcatcca
     1561 taatcactac agcactggcc atatcttcac taaaaatgat tttacgctcg ggcataccca
     1621 gggcatcaaa aacttgattc aatggtccaa aagtctcatt aagtaatgga atctgtggtc
     1681 caaaatcagg attgctggga tcaagcggtg cataaggcac tgtcgtaaag taaggtagag
     1741 aagttacgta aggcacattg cctaccacac cttttgcgcc attagctgtt agcgcatcca
     1801 aagtcgccga taaagcggcc gcaaagacgt taggatcagt gatatcatta ccgccgtatg
     1861 tcgttggatc taaatttcct gtttgatcca cgccacttcc tccggaagtc gcatatccta
     1921 aaacatcatt tccgccaaat tccgacaagg taaagaacgt cggattttgt gctacagcat
     1981 cctctaacat agaggcattg gcagaacttg ccatacgggc aaaatatgga ttggctaaac
     2041 caagaggtac ccccgctagg ttaccgtaac cattggccaa aaagtggaaa ctttttgctc
     2101 cagggacacc catgttattg aatactcctg cgaccacatt ggtcacttca gtggttgggt
     2161 ttgcctcgag tacggccgga ccagatccat tgaagtacaa tctcggatta gcaattcgat
     2221 tgcctccgta aagcaaccct cctacgttat ccgtcatcat gggctgatta aaatcaccgc
     2281 ccccggcagc ggcaaactga gttgccaaag tgttcgggaa tgaattcgtc tgcgctgctt
     2341 taaataaagc accatctgta aatccagcgg taaaagaggc ccctaaggcc acataattgg
     2401 agaaatcggc atctccagca gtcaaggcca cagtttgctc cggggccgct gtctctgtca
     2461 tatcatcgct ttcacaagac acaattccaa gtgccagtaa agcaaaacct aaatatttaa
     2521 aattcatctt cataattatt ataaattatt aattgtccat gataagtaat acatggaacc
     2581 aattcggcct gttccatagg cttgaatgta ctcttcgcca agggcatttg ctgcgcctag
     2641 tttaaaggta gacttcaaga agtttggcat tctatagttg atttggaagt caaatacatt
     2701 ataagcgggg atgtctccat cgccaaaggt tgcttcccat ttgtagtctc caacataacg
     2761 ccaagcggta ttgaatccta aattatcaat aacctcggtg tttccaaaag agaatttgaa
     2821 tttgtcttgt ggggtattga agtttgttct aaagtctggg ttaccccctt cgcgatcttg
     2881 cacggcataa gtataacttg cgcctaaatc gtatcctccg aatactttag ctgaaagtcc
     2941 aagacttccc ccataagagt taatctcttc ttcagagttc gtgtagacct ggtagacttg
     3001 aaagtctcca ttggcgattg cggcaacagc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnccaggtac
     3121 accagtgatt ggctcatctg aaaaatcaac ggctccgtaa aacggagcaa tgactgtctc
     3181 attagaaatg aagtcattat aggtattgta ataccagtta aagtcaacga ttaatttacc
     3241 aagttttccg cgatatccga aatcgataga gcgtacctgc tctggcttca catagttcga
     3301 attagcaaca ctcagcgctg aagcatctcc tgtagccgca aaagccccta cagaactcgc
     3361 aaagaaagaa ttgttgtagg ctcctgtccc attgacagat acagttgttg ctccttgatt
     3421 taaaaattgc ccagcgggac tcaaaccata ctcacgcacg tcacgctctg ggttgttact
     3481 cgctccaccc actaagatgg cgcgacctac gtccaatccg atatataaat cctgggtcgt
     3541 cgggtttcta aatcctgttt ggatagacgc acgaatgttg tggttatcat tgatggtaaa
     3601 tccagccgct aaacgtggcg agaagaatcc atcaaataat tctgacttgt cataacgcac
     3661 agaccccgtt aatttaagat ctaagttgtc agcgaggttg aatttctttt gaccttgagt
     3721 gtaaaatcca agttccgagt agtcaatcgg cccgtcgcca tcggtataga tactcccgcc
     3781 tgaattcaga ctgtaagtac ggaacgatcc acccacttgg agctcaaatg gcttgaaaat
     3841 ttcagaaaaa ttatagttgt aatccgcgtg ataaattttg gaattatcag tgaattttga
     3901 tccggtggtc aaatcaggat caccgatact tgtattgaat gcattttcat attcggctgt
     3961 tcctggcaag aaacgtcctg tatctgcagt ttgtctagca aaatcatggg cttgatctgg
     4021 tgttaaccca gcagaaagct gtgactgaac aaaagcgccg acatactgac cgaaccacgt
     4081 ttgatcatct ttccatgctc ggttgatatt gatccccgta aagaccatat cgtaactgtc
     4141 tccggcgtca tcagtagtca tatatccacg aacgaaaaag ttattattac gcacttctaa
     4201 tttgtgctga gacatttcaa aattgtcaat agcataacga ttcgcccctt gataaagcgt
     4261 agatcccgtg ccgtattttc cgacataaga gatctctaaa tcatcttcaa acggacgata
     4321 gtaaacgccc cagtctgctt tgatactctc cgcagtataa tcagtaaggt caatttcatt
     4381 ataaccagta cggcttacat ttactgaagg cactaattgc tcagcaccgg caggaagaat
     4441 acctaaacca accaaggctt gcgcaacccc gttgatgttt gtagatacct catctccgta
     4501 aacgtttacc ccgtcatagt taatgtccgc acgagaggtc cccgtaccga ctttgccgtc
     4561 gtaattgttt gcgccccaat ccgtaccgct gaggtaacct ccgtttattt tcacggccag
     4621 tttatcacta aacttgtgtc ctacgcggaa attgacatcg gtgtaaggat tgtctccaac
     4681 aaaagtttga gaagtctgac cttgttttaa agaaacgctg atcccttgat gatcaaaagg
     4741 atttttactg cgcataaaca aaattccgtt aaaggcattg gccccataaa gcgcagaagc
     4801 ggctccagga agaatctcaa cactttgaac atcggtatcg gtcatcccca aaaggttacc
     4861 caatgggaag ttcaaagccg gtgcagcatt atccattcca tctaccagct gcataaaacg
     4921 ggtgttcgcg aaggtcgcga atccacgggt gttgatcgat ttaaaggtta aactgttggt
     4981 gttgatgtcc acgcctttta agttctcgag tccatcatag aaatcagcag aggctgtatt
     5041 cttgatttcc tttagcccaa aacgctcaat cgttaccggg gactcaaaaa tacgctccgg
     5101 tgttctcgaa gccgaaataa ccacttcatc caattccgag ccttcgacta gggtcacgct
     5161 caaggattga ttatttgccg ttacggttac tttttgcaag gcgtaaccaa tatttgaaac
     5221 ttcaagatta aatggcggct ccgcatcgac aagcatcgca aaattaccat cgaaatcagt
     5281 agcggtcccc gctgcagttc ctacagctac aacattggct cccactacag gaacccctgc
     5341 ctcgtcaacc actgttccgc gaacattggt ctgcgcataa gtgatgcaac tcaatagcaa
     5401 gccgcaaaca aacaatacgt ttttcataat ttgattagtt aaaatttgtt aaatatactt
     5461 ataaatatgg ctgattcgga agtttaaatg cggttttttt gccccaatta caagtattca
     5521 aaccacttta cagaacccgt caagcgttaa ttttagccat ttctttggtc aaaatatccg
     5581 ctcaaaagat tagaacacaa tgcctttctt acttaaaatt cccttaaaca gttccacaaa
     5641 cagttccacg gattatgaat tcaatggctg gcaataatgg cgaatcgaat ccttaaataa
     5701 agacaaaata cgacgtaaat caggatggtc ttttgagatt tcacgaccat cgatttctac
     5761 tattggcgtt aattctccca tagttcccgt ggcaaaaact ccatcggcgt tataaaactc
     5821 ggacaaacta agatctgcct cgatacagga aactccgttt tttgcacaaa tgtccctaac
     5881 ggtttttcgc gtaattcccg gcaaacaagc atgagcgaat ggcgtgtata ccacaccatt
     5941 tttcagtgca aatacgttgc tgccattgag ctctgccaca aatccacgct catccagcat
     6001 aagacctgca tctttacccg ccacattagc ctgaatttta gccaggatat tattgagtaa
     6061 attgttgtga tgaattttac tgtctagaaa ttgcgggcca ttgcggcgtt gactgctcga
     6121 aataacttta attcctgaat tattatcata aacaaggggc ttccattccg ccaaaacaat
     6181 caaacaagag ccactttgat tcaggcgggg atccatacca ctggttattt tttcgccgcg
     6241 cgtcaaagtc aaacgaatat gcgtgtcatc attcatccca ttggccttta aggtttggtc
     6301 annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncatgac ctctgccttg
     6361 gtggggatgt ctacaaaagc caaagtcttg gccgacgcca agagacgatc caaatgatcg
     6421 tccaagcaaa caatgccctc tggatagacc ctgagccctt cccataccgc atcaccgccc
     6481 tgaacaacac tatcaaatac ggagactttt gcctggtggc gcggatataa tcgatctctt
     6541 atccacactt taatgtcctg atttcggggg tcaaattttt gtaacatgat ggcttttatt
     6601 taagagtact ttttgttgta gtttatggta aaaaggcaag gcttcttgaa acacagattc
     6661 gagatgatcg ttccaaaaaa tgtttgaggc cgattttggc ctatcaaaac cggtgctgtt
     6721 atgcacattt ttataccagt gaggcgccca aattccgtct gcagcattag ggccacttgg
     6781 ccattgaccc atctgtttac tgaatggaat gtttaaggcc tcacaaagtt gttgtaaata
     6841 ttgcggtggg tcaatcatca gctggtcgct ctcaattacc gtataagcga tatgatgacc
     6901 gtcaaaaaac tccatcagtt caaaggcccg ttttatccct atagcatcaa ggtcgggatg
     6961 ttcaatgacc ttggcaaatg actgtaagag cttcttggga tgacgaatta aaatgacatt
     7021 ttgccaatcc ttcatataaa aaggttcccg ctcaaggcaa tgatgggcca tattctttac
     7081 aaagacattt tgctcggaaa ctgcctggta tatttgatcc aaaacctgat catgttctgt
     7141 gggcatggtg gccaaaatct cacgctccat ggggtgttcc tctcgatctt ggacatgagc
     7201 cagataataa gcataaaagg gttcatccat caccctaaag tcagggtgct gagcaaaaga
     7261 atacatcagg gccgtagaaa tatttcgggg accggagatt aaatggacga ctttcttcac
     7321 gacctaaaaa taaacaatca aagccgattt tatgcaggag tttgccatag ttatcactcg
     7381 gagacatttt gtaactttaa gccatgagca ctaaggtctt aatcgtatgt gattctttca
     7441 aggagagtct ggttgcttct gatgtggcca aggctatagc ccgcggcatc ggcgctgccg
     7501 atgccgcagc gcgctgcacg ctcatgcctt tttcagacgg cggcgaaggg gcgattgaag
     7561 ttttagagca gaacttgaat acccgcagca gccctggagg ccatcgtgtg acttgttcca
     7621 ctcaagacgc tcttgggcgc cctataagtg cggagtactt ccgatttaaa cagcggcctg
     7681 ccgcttggat tgagctctca gccgccagtg gcattcacct gattgaacca gaggcacggg
     7741 atccaaaaat cacctcaaca tacggcacgg gactactgat caaacacgcc atcgagcagg
     7801 gcgccactga aattattctc ggcataggcg gcagcgcgac gaatgatgcc ggagccggca
     7861 tcattcaggc tttggggggc aaacttctcg atgaacatgg aacagaactc acaaggggcg
     7921 gggccgctct tcagggactg accgcactag tccctccaga gggactccac tcaattaaat
     7981 ggcacatcgc ttgcgatgta aacaacccat tagttggcgc tcatggggca agccacacct
     8041 acggccccca aaaaggagct tcacaaaacg atatcgcgtg cttagaatct gcgttaacgc
     8101 atttcgctca aaaaattaaa gacactcatg gggtctcaat tgaaaccatt gcgggtggcg
     8161 gagctgccgg aggaacagcc gcaggtctcc acggcttatt taaggccgag cttatttcgg
     8221 gttttgaact gctttgtaag atgacctcac tggaagagaa aatcaaagcg tgtgacgtca
     8281 ttataaccgc cgaaggacgt attgatcatc aatcgcttac cggaaaagtt ccaatttcag
     8341 tagcccaact tggtaaaaaa caccgtaaac cggtaattgg cgttgctgga tccattgagc
     8401 ccccttacca ggcctatggc aaggcaggac tttcgagtct tttcagtatt caagacggtc
     8461 cgatgaccct agaagactca aaacgcaaca ctgcgcgatt gatagaggat accctttata
     8521 gagtttggtc tttatataaa aacacgcgac aatgacttgg accctaacct tactccttat
     8581 tgcggtcgtc tggatcatta taggaacgac taaactcaag ctgcatccct tttttgtact
     8641 gctctatgct gccattggct tgggcatatt ggccgatatt cccacgaaca ccctaattcc
     8701 attaatcact aaaggcttcg gtaaaacctt tgaaagtatc ggcctactca tcgttttcgg
     8761 aacccttatt ggggtttatt tagagcaatc gggggcgaca cagtctattg ctcaaagcct
     8821 cttaaaaaga ctgagtaaat tgcctttgcc ctacgccatt agtgctattg gctatattgt
     8881 cgctattcct gtattctgcg attccgcttt tgttatttta tcggccctga acaaaaccct
     8941 tgctcaaaag agcaaaacac caagaatagc cctgactatt gccctatcaa cgggtctttt
     9001 tgcgccgcat gtcttggttc ctcccactcc tgggccactt gctgctgcgg cacaacttga
     9061 acttcaaaac cttttgttac tgattctatt tggcggtttg gtggcatttc ttctggtgtt
     9121 ggttggggcg atttatgctc aatatcttgc taaaaaatat aaagcgacga cctctttcga
     9181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc caaaaaatat
     9241 aaagccgcaa cgtctttcca agaggagtat aatccgacaa cagtagatca agagcagttt
     9301 tccccaaaca atctccctaa tatttatcaa tcactgagtc ctatcgtggt accaattctc
     9361 ctaatggcca cgggcagtat tgttcaattt atttccccga acctaggcgc atttaaaaat
     9421 atgattaccc taattggttc ccctgaggcc gccttgttta tcggtgtctt attggcgatg
     9481 agattaaata gcaaaaaaca aaataagggc gatcaatcaa aaagaaatct gctcgagggt
     9541 ggtttaaaac tagccgcgcc aatcttgctc attacggcaa tggggggtgc cctcggaggg
     9601 attatcaaag aactgccgct tactcaatat ctcagcgcat atacctcctt gcagcagttt
     9661 ggactgattc tcccatttgg tatcgcggcc ttacttaaaa cggcgcaggg gtcatcaaca
     9721 gtggcgatca ttacaaccgc atccattatc tttcccattt tagggcagtt gggcatgatt
     9781 agcgagctcg ataaagtttg ggtaattatt gccataggaa cggggtctat gaccgtttct
     9841 cacgccaatg attcatattt ttggatcgtt tcacagatgg ggggtatcga cgtt
//
LOCUS       DPUP01000225            2697 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_32648,
            whole genome shotgun sequence.
ACCESSION   DPUP01000225 DPUP01000000
VERSION     DPUP01000225.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..744
                     /locus_tag="DHV98_08625"
     CDS             <1..744
                     /locus_tag="DHV98_08625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002672024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HCK06391.1"
                     /translation="VEIRAGTGGDEASIFAGDLHRMYTKYCESKGWQVSVVDYNEGTS
                     GGFKEMIFEVNGEDVYGTLKYEAGVHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDV
                     ELDMTEVRIERTTSTGPGGQSVNTTYSAIKLHHEPTGMIVSCQDQKSSHKNLEKALKV
                     LRSRLYELELAKKMEADSQKRKSMVSSGDRSAKIRTYNYPQGRVTDHRINLTLYDLGN
                     IMDGDIQKIIDELQLVRNTEKLQEAGETF"
     gene            771..1592
                     /gene="pyrF"
                     /locus_tag="DHV98_08630"
     CDS             771..1592
                     /gene="pyrF"
                     /locus_tag="DHV98_08630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013868917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HCK06392.1"
                     /translation="MTQEQLTQAIHDKSSFLCIGLDVDLDKIPAHLLEQEDPIFAFNK
                     AIIDATHHLAVAYKPNTAFYESYGTKGWQALEKTIAYLNVNHPEIFTIADAKRGDIGN
                     TSTRYAKAFFDHMGFDALTIAPYMGRDSVEPFLAFEDKFVILLALTSNPGAFDFQVSD
                     AAQNLFEQVIQTAQTYKNHERLMFVVGATKTEYLSRVRAIAASSFLLVPGVGAQGGSL
                     DEVCAHALNDQVGLLINSSRGIIYASHGEDFAQAAAAEAQKLQEQMKAILAKRWG"
     gene            1698..>2697
                     /locus_tag="DHV98_08635"
     CDS             1698..>2697
                     /locus_tag="DHV98_08635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007811628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HCK06393.1"
                     /translation="MQQPEPYRPKHKIRIVTAASLFDGHDAAINIMRRIIQSTGVEVI
                     HLGHDRSVDEVVSTAIQEDAHAIAMTSYQGGHMEYFKYMYDLLQERGAGHIKIFGGGG
                     GVILPEEIKTLMHYGITRIYSPDDGRAMGLQGMINDLVEKSDESRGDLTEFDHKKLSV
                     DQPQYVAQCISAAENFPDQIKLFLEKLRETADINRVPVLGITGTGGAGKSSLVDELVR
                     RFLAAYPEKRLAIISVDPSKRKTGGALLGDRIRMNAINTSRVYMRSLATRQSNLALSK
                     YVNDALDLVKASGFDLVILETSGIGQSDTEILEHSDVSLYVMTPEFGAATQLEKIDM"
BASE COUNT          766 a          578 c          670 g          683 t
ORIGIN      
        1 gttgaaattc gcgcagggac gggtggtgac gaagccagta tttttgccgg cgatttacat
       61 cgcatgtata ccaaatattg tgaatcaaaa ggctggcagg tcagtgtggt cgattacaac
      121 gagggtacga gtggtggttt caaagaaatg atctttgagg tcaatggaga ggacgtttat
      181 ggaacgctta aatacgaagc cggggtgcat cgcgttcagc gcgtcccaca gaccgaaact
      241 caagggcgag tgcacacgag tgccgctaca gttatggtgt tgcccgaagc cgaggagttt
      301 gatgtggaac tcgatatgac tgaggtgcgt atcgaacgca ctacgtcaac agggcccgga
      361 ggacaatcgg taaacacgac gtattcagcc attaaattac accacgaacc aacggggatg
      421 attgtgagtt gtcaagacca aaaatcatcg cataaaaacc ttgaaaaggc cttgaaagtt
      481 ttgcgctcaa gactttacga gctcgaattg gccaaaaaga tggaggccga ttcacaaaag
      541 cgcaaaagca tggtgtcctc gggagatcgt agtgcgaaga ttcgcaccta taactacccg
      601 caaggacgcg ttacagacca ccgcattaat ttgacccttt acgatttggg gaatattatg
      661 gatggagaca tccaaaaaat aattgacgaa ttacaattgg tccgcaatac cgaaaaactg
      721 caagaggcag gggaaacctt ttagatggat caagtattta atttaaactg atgactcagg
      781 aacaacttac tcaggcaata cacgataaat catcttttct ctgcatcgga ttggatgttg
      841 atttggataa aattccagcc catttattgg agcaagaaga tccaattttt gcctttaata
      901 aagccattat tgatgcaacg catcacttag ccgtggccta caagccaaac acagcgtttt
      961 atgagtctta tggaaccaaa ggatggcagg ccttagagaa aaccatagcc tatttaaatg
     1021 tcaaccaccc cgaaatattt actattgctg atgccaaaag aggggatata ggcaatacgt
     1081 ctacgcgcta cgcgaaggca ttttttgatc atatggggtt tgatgcccta accatagccc
     1141 cttatatggg ccgagactct gtagagccct ttttagcctt tgaagacaaa tttgtgattc
     1201 ttttggcttt gacctcaaat cctggcgcct ttgactttca agtcagtgat gccgcacaaa
     1261 acttatttga gcaagtcata caaaccgccc aaacctataa aaatcacgaa cgcctcatgt
     1321 tcgtggtggg ggcgactaaa actgagtatc tatctcgtgt gcgggccatt gctgcctcct
     1381 cttttttatt ggttcccgga gtcggggccc aagggggtag tctcgatgag gtctgtgccc
     1441 acgctttgaa tgatcaggtc gggcttttga tcaattcctc acgcggaatc atttatgcaa
     1501 gccacggaga agactttgct caagctgcag ctgctgaagc tcaaaaactt caagagcaaa
     1561 tgaaggcgat actcgcaaag cgttggggct aagtccccgt ttattgaggg tgttttaggt
     1621 tgaataatgt ggtataaaat catccattcg ctgatgaatt cgtaaattta tacccactaa
     1681 cgacccaaat attgacaatg cagcaaccag agccctatcg tccaaaacat aaaattcgaa
     1741 ttgtaaccgc agcctcgctc tttgatgggc atgatgccgc cataaatatt atgagacgca
     1801 tcatccagtc tacgggcgtt gaggtgattc atttggggca cgaccgaagt gtcgatgaag
     1861 tcgtctcgac cgcgattcaa gaggatgcac atgcgattgc catgacctcc tatcaggggg
     1921 ggcatatgga gtattttaaa tacatgtatg atctgcttca agagcgcggt gcggggcata
     1981 taaagatttt tggtggcggt ggtggtgtga tccttccgga agaaataaaa acattaatgc
     2041 attatgggat cacccgtatt tattccccag acgatggtcg tgccatgggc ttacagggaa
     2101 tgattaacga tttagtagaa aagagtgatg aatcgcgggg ggacctcact gagttcgacc
     2161 ataaaaagct ctcggtagat cagcctcaat atgtggctca atgcatcagt gctgctgaaa
     2221 acttccccga tcaaatcaaa ttgtttctgg aaaaacttcg tgaaactgct gatataaatc
     2281 gggttcctgt cttgggaata acgggcaccg gtggggcagg aaaatcctct ttggtcgatg
     2341 aactcgtgcg ccgatttttg gcggcctacc cagaaaagcg tttggccatt atttcggtgg
     2401 acccatctaa gagaaaaact ggaggggcct tgttggggga tcggattagg atgaatgcca
     2461 tcaatacctc gagagtctat atgcgtagtt tggcgacgcg ccaaagtaat ctggcgctgt
     2521 ccaaatacgt caatgatgcc ctggatttag tcaaagcttc aggatttgat ttggtgatcc
     2581 tagaaacctc tggaataggc caaagcgata ccgaaatttt agagcacagt gatgtgtcgc
     2641 tctatgtgat gaccccggaa ttcggggcag ccacccagct cgaaaaaatc gatatgc
//
LOCUS       DPUP01000226            6998 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10657,
            whole genome shotgun sequence.
ACCESSION   DPUP01000226 DPUP01000000
VERSION     DPUP01000226.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 6998)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 6998)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6998
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1027)
                     /locus_tag="DHV98_08640"
     CDS             complement(<1..1027)
                     /locus_tag="DHV98_08640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HCK06394.1"
                     /translation="MRLYTTLTFILMSYVVIAQPCSAGMAGGYPCDGYDLLSHIPLST
                     FNAGSANDSWGWTDPQTGKEYSLVGLNNGTAFVDTSDPVNPIYLGKLPTHTQSSTWRD
                     IKVYNNHAFVVSEASGHGMQVFDLTRLRNVSNPPATFTEDAHFDNFGSAHNIVINEAT
                     GYAYAVGANTYSGGAHFINIQDPLNPVDEGGYSGSGYTHDAQVVIYNGPDSDYQGQEL
                     YFGNNEDRAVVVDVTDKANPVFISDFNYSNVDYTHQGWLTTDQRYFIIGDELDESSFG
                     FNTRSIIADYSDLDNPVFHDEYFGTTAAIDHNGYVVGNKYYLSSYTAGMRVIDISGIA
                     TPGSLNES"
     gene            1184..2338
                     /gene="thiL"
                     /locus_tag="DHV98_08645"
                     /pseudo
     CDS             1184..2338
                     /gene="thiL"
                     /locus_tag="DHV98_08645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006259841.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
     assembly_gap    2073..2131
                     /estimated_length=59
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2288..3076)
                     /locus_tag="DHV98_08650"
     CDS             complement(2288..3076)
                     /locus_tag="DHV98_08650"
                     /inference="COORDINATES: protein motif:HMM:PF12697.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06395.1"
                     /translation="MALSQSLIVLRYQINGQGPALFFLHGFLEDAEIWDALIGPLSLN
                     YTCIQIDLPGYGTNTDSLFPDQLAEISHALEHLREKLSLNSFSIVGHSMGVYIGLAWL
                     ELAKIQPRAFVAINGSVYRDNPERLIERKRSISLIQRHKDAYVKMAIKGLFLQEQLTL
                     YFDEIAQLTTRALKVPKLTLTQSIRAMSTRVDHRQTLKNFLGHKHLVAGDQDPLFPRA
                     LSQDMALNTGAKLHTYSGSHMGWLEAPELILTILGSERIPSASN"
     gene            complement(3077..4369)
                     /locus_tag="DHV98_08655"
     CDS             complement(3077..4369)
                     /locus_tag="DHV98_08655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="X-Pro aminopeptidase"
                     /protein_id="HCK06396.1"
                     /translation="MKYHPIDKSLFETNRKNFMAQMAPKSIAVFNSNDQYPVSADTLL
                     PFEQHRDLFYLSGVDQEESLLLLFPDAVEPEHREILFLRETNDHIAVWEGAKLTKEAA
                     YGTSGIKTVYWLDAFDRVFFQLMTQANTIYFNTNEHYRQSVQTQTREDRFIEQTKKKF
                     PAHSWAKSNPILQRLRGVKDPIEIELIKHACGITNKGFRRVLGLLKPGVWEYEIEAEF
                     IHEFIRNRSKGFAYTPIIASGSNNNVLHYIENNKQCQDGDLLLLDVGAEYANYSSDMT
                     RTIPVNGRFTKRQKEVYNAVLKVKDEATKLLVPGAYWKAYHVEVGKLMTSALLDLGLL
                     DKADVQNENPEQPAYKKYFMHGTSHHMGLDTHDYGLLFEPITENMVFTVEPGIYLPDE
                     GFGIRLEDDVVVQPQGDPINLMADIPIDADEIESLMNS"
     gene            4507..6315
                     /locus_tag="DHV98_08660"
                     /pseudo
     CDS             4507..6315
                     /locus_tag="DHV98_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269771.1"
                     /note="frameshifted; too many ambiguous residues;
                     incomplete; missing stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
     assembly_gap    5705..5776
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6316..6438
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <6439..>6998
                     /locus_tag="DHV98_08665"
     CDS             <6439..>6998
                     /locus_tag="DHV98_08665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004569264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK06397.1"
                     /translation="KQTYIQPKHSLGERPYRFNWQTPILLSSHNQDILYLGSQKLHRS
                     FNQGDTWTAISGDLTKGPKQGNVSYGTLTTISESPFDFNTLVVGSDDGLVSLTRDSGV
                     TWKSISAELPKDLWVTRVVASAHEASRIYATLNGYRWDDFTPYVYVSEDYGQSWRSLS
                     DGLPLGAVNVIREDPTHADLLYLGTD"
BASE COUNT         1814 a         1482 c         1572 g         1876 t
ORIGIN      
        1 cagactcatt gagactcccg ggggttgcaa tcccacttat atcgatcaca cgcattccgg
       61 ctgtgtaact tgataaataa tatttattgc ccacgacata accgttgtga tcaatagccg
      121 cagtggttcc aaaatactcg tcgtgaaaaa cgggattgtc cagatcagaa taatctgcga
      181 tgatcgagcg cgtgttaaat ccgaaactac tctcgtctaa ttcatcccca ataataaaat
      241 atcgttggtc tgtcgttaac caaccttggt gggtataatc cacattactg tagttaaaat
      301 cagaaataaa tacaggattc gctttgtctg ttacatcgac aaccactgcc cgatcttcat
      361 tattcccgaa atacaattct tggccttgat aatccgagtc tgggccattg tatatgacca
      421 cttgagcatc atgggtgtaa ccacttcccg aatagccacc ttcgtccact ggatttaaag
      481 gatcctgaat attaataaaa tgtgccccac cactataagt gttcgcgcca acagcatagg
      541 cataacctgt tgcctcattg atcacgatat tgtgtgcact cccaaagttg tcaaaatggg
      601 cgtcttctgt aaaggttgca ggcgggttgc tcacgtttcg taaacgtgtt aggtcaaaga
      661 cttgcatccc atggccactc gcttcactca ccacgaaagc atgattgtta tacactttaa
      721 tgtcgcgcca cgtactggat tgagtatgcg tgggtaattt tcccagataa attggattta
      781 ctggatcact ggtgtcgaca aatgccgttc cattgttcag gccgaccaaa gagtattcct
      841 ttccggtttg tgggtctgtc caaccccaag agtcattggc tgaacccgca ttaaaggtag
      901 aaagcgggat atgagataag aggtcatagc catcgcaggg gtatcctcct gccattcctg
      961 cggaacacgg ttgggcgata accacataag acattaaaat aaacgtaagg gttgtgtaga
     1021 gacgcattgt aaaagtttga gttaagtaag actaatttgc gggtaaaact aacgaaataa
     1081 tgttaactat tgtgttaatg cgttatgata aatgtcagtt actgcctgtg gcttagaggc
     1141 attaaacatc ctattgatta cctttgtccc ttaaaccata cctatgtttg gccctaaaga
     1201 agaatcccgc acgccattgt ctgcaatcgg agagtttccc ttaattgagc atcttacggc
     1261 gtcttttaaa acacatcaca aaaccactgt tctcggtgtt ggagacgacg ccgcactgat
     1321 taaaaccgca gcgggacatc agcaggtggt gaccactgac ttgctcattg aaaacatcca
     1381 ttttgatttg gcctacatgc ccttaaagca tttgggatac aaggcagtag cggttaattt
     1441 aagtgatctg tgcgcgatga atgccgcgcc aagacaaatc acggtttcca ttgccgtttc
     1501 gaatcgtttc ccattagagg ctttggaaga tttgtactcc ggtattgcga tggcctgtaa
     1561 tgtttataaa gtggatttaa tcggcggaga caccacctcc tcgacaacgg gactcattat
     1621 tagtgtcacg gcgatcgggg ttgtaaaacc gtcgaacgtc gttaaaagaa gtggcgccaa
     1681 agaaaacgat ttgctcgttg tttctggaga tcttggggcg gcatatctgg gcctacaggt
     1741 ccttgagcgc gaaaagcagg tttttcaagt taatccaaac aatcaaccag atcttacccc
     1801 ctacacttat ctcgtagagc gtcagctcaa acccgaagcg agaatagatg tcattggatt
     1861 gttgaacgat ctaggcattc agcccacatc aatgatcgat gttagtgacg gcctgtcttc
     1921 agaaacaatt catctaacca aagcctctaa attaggcgct gtaatttatg aggaacatat
     1981 tcccttagat ccgcaagtta ttagcacttg tgaagaattt aatatggaca gtacgaccat
     2041 agcgctcaat ggcggagaag attatgaatt gcnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngttttgaat ggaggagaag attatgaatt
     2161 gctttttacc ctagctcaga acgattaccc tgcccttaaa ggaaatccta atttcacggt
     2221 gatcggtcat atgacccatg agcgagaagg ggtacactta atgactcgag cacaaacgaa
     2281 gattccctta attgctcgcg gatgggatcc gctcgcttcc caagatagtc aagattagtt
     2341 ccggggcctc taaccaaccc atatgactgc ctgaataagt gtgcagtttg gcccctgtgt
     2401 ttaaggccat atcttggctg agggctctag gaaataacgg atcttgatcg ccggcgacaa
     2461 ggtgtttatg gcccaaaaaa ttctttaatg tttgtcgatg atccacgcga gtgctcatcg
     2521 cccgaatact ttgcgtaagg gttaattttg gcactttcag ggcccgcgta gtgagttgtg
     2581 cgatttcgtc gaagtacagg gtcaattgct cttgtaaaaa caagcctttt atggccattt
     2641 taacataggc gtctttatgg cgctgaatga gcgatatact gcgtttgcgc tcaatcaggc
     2701 gttcagggtt atcgcgataa acactgccgt ttatcgccac aaaagctcga ggttgaattt
     2761 tggccaattc cagccaggcg agtccgatat acacacccat cgaatggccg acgatactaa
     2821 aggaattaag ggacagtttt tctcggaggt gttcaagggc atgacttatt tcagccaatt
     2881 gatccggaaa taatgagtct gtattggttc cgtatccggg taaatcaatt tgaatgcagg
     2941 tgtaattcag gctaagcgga ccaatcaacg catcccaaat ctctgcgtct tctaaaaacc
     3001 catgcaaaaa aaataaggcc ggtccttgtc cgttgatctg atagcgtaac acaattaaac
     3061 tctggcttaa cgcaatctaa gaattcatta agctttcaat ttcatcggcg tctatcggaa
     3121 tgtcggccat aagattaatc gggtcgccct gtggttgaac cacgacgtca tcttcaaggc
     3181 gaataccaaa accttcatcg ggcagataaa ttccgggctc tacggtaaag accatatttt
     3241 cggtgatggg ctcaaagagt aacccatagt catgcgtatc cagacccata tggtggctgg
     3301 tcccatgcat aaagtatttt ttgtaggccg gttgctctgg attttcgttt tggacgtctg
     3361 ctttatccaa aagacctaaa tccaaaagag cactggtcat gagtttaccg acctccacgt
     3421 gatacgcctt ccaataggct ccgggcacga gcagtttggt ggcctcatcc ttgactttta
     3481 agacggcatt gtagacctct ttttgacgct ttgtaaagcg accattaacc ggaatggttc
     3541 gggtcatatc gctgctgtag ttcgcgtatt cagcgcctac atcgagcagc agtaagtccc
     3601 cgtcctgaca ctgtttgttg ttctctatgt agtgcaggac attattgttt gatccactgg
     3661 cgataatggg ggtataagca aagcccttgg agcgatttct gataaactca tgaatgaatt
     3721 ctgcctcaat ttcgtattcc caaacaccgg gttttagcag gcccaataca cggcgaaatc
     3781 ctttgttcgt aatcccgcaa gcgtgcttta tgagttctat ttcaatgggg tcttttactc
     3841 cgcgcagcct ttgtaaaatc gggttgcttt tggcccagct gtgcgcgggg aacttctttt
     3901 tggtttgctc aatgaatcga tcttctctgg tttgtgtctg taccgactga cgatagtgct
     3961 cattggtatt gaaataaatc gtattggcct gtgtcatgag ttgaaaaaag acccggtcaa
     4021 aggcgtccaa ccaatagacg gtttttattc cgcttgtacc ataggccgct tctttggtca
     4081 atttagcccc ttcccaaaca gcaatatgat cgttggtttc acgcaagaag aggatctcgc
     4141 gatgttccgg ttctacggcg tctggaaata acaacaagag gctttcttct tgatcgactc
     4201 cactgaggta aaataggtcc ctgtgttgct caaaaggcaa aagcgtatcg gcactcaccg
     4261 gatattgatc attgctgtta aataccgcaa tacttttagg cgccatttgg gccataaaat
     4321 ttttgcgatt cgtttcaaaa aggcttttgt ctattggatg atatttcatg agtcgacttt
     4381 gtttgaaacc tcaaaaatag ataaaatact gcctttatcg tctgatgtcc atcagaaatt
     4441 aacgccgaga atgggcctta gaaggtcatt tttaattaga ttagcaacac tgaaaaattt
     4501 atttccatga aacaattttc ccttcttttt tgtgcgtttc ttatgctaaa cacaatttta
     4561 gcgcaaacgc ctgccacttc tgctcaagac attcaagcag cgctaattca aaagcagacg
     4621 ctaaaagcgc agtcctcagt aaagaatttg gcctggcgta atgtgggccc cacaatcatg
     4681 agcggtcgtg tcgtggattt agcggtaaat cccgatgacc caacagaatt ctatttggct
     4741 tatgccagtg gcggcgtctg gtatactaaa aataacggga ccagttttga tccggtattg
     4801 gacaatagca tgactcaaaa tgttggggct ttggccgtgg attggaacaa taagatcatt
     4861 tgggtcggga ctggtgaggt caatgcatca aggtcatctt atgcgggaat tggactgctc
     4921 aaatcaaagg atcacggtaa gacctggcaa tcgatgggat tagttgacgg ccatcacatc
     4981 agtagaatcc ttttggatcc tgaaaatcaa gaccatgtca ttgtgggggt taccggacat
     5041 ctttactcgg aaaacccgat gcggggtgtt tacaaatcaa cagacggtgg gatgtcctgg
     5101 aaacaaaccc tgttcgtggg ttcagatact ggtgtcatag aaatggcttc tgagcccgga
     5161 gcgccttcgg taatttatgc ggcaacttgg caaaaagacc gaaaggcttg gcactttgag
     5221 ggcagtggct caaaaagtgg gatttacaaa agcactgatt ccggagacac atggcaatta
     5281 gtcaccacag cggagagtgg attccctacg ggtcagggcg tcggtcgcat tggtcttgcc
     5341 gtttatgatg aaaatacagt gtatgccatt gtcgataatc aagatcatag accgtcctca
     5401 gcagcggagc gccagggcct ggacgcttct gattttgaac agatgagtac ttctgatttt
     5461 gccaaattat ccgatcaaga actcgaatct tttttgcgca ataatgcatt tcaagaggat
     5521 tacacagcga cctcggtaaa aactatggtg gccaagggtc aaattacacc cctggcgtta
     5581 aaggattatt tattcgattc aaatgctcaa ttattcgaca ctccggttat tggcgcagaa
     5641 gtatatcgaa gtaatgatgg tggaaaaact tgggcaaaaa cccacacggg ctatttggat
     5701 aatcnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnngggc tatttggata atctgtatta ttcttatggc tattattttg
     5821 gaaaaatcca tgtgcgtcct caggatgcca atacaattta tatctacggc gtgccccttt
     5881 tgcgttcgga cgatggaggc cagagctttg tcagtttgga tgcgcctaat atgcatgggg
     5941 atcaccacgc tttgtggatt aatccaaatc gaccggacca tttgatcaac ggtaatgacg
     6001 ggggattaaa cattagctat gacaatggag cgcattggat caagtgcaat acgcccgcgg
     6061 tgggtcagtt ctacgccgtg gccgtggacc atcaggcccc gtacaatgtt tacggtgggc
     6121 ttcaagataa tggcgtttgg aaaggttcaa gtaaaacggt agagagtgtt cgatggcatc
     6181 aatcaggaca atatccctat accatgatta tgggtgggga tggcatgcaa gtcgccattg
     6241 accagcgcga tcacaatgtc gtttttacag ggtatcaatt cggtaattac taccgtttga
     6301 atttggctac ggatannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnta agcagaccta tattcagccc aaacacagtc tgggcgagcg
     6481 tccttatcgc tttaattggc aaacaccaat tcttttgagc agtcacaatc aagacatctt
     6541 atacttaggg agtcaaaaat tacaccgtag ctttaatcag ggcgatacct ggacggcgat
     6601 ctcgggcgat ttgaccaagg ggcccaaaca aggtaatgtt tcctatggca cacttaccac
     6661 cattagtgaa tccccttttg attttaatac gctcgttgta ggaagtgatg atggtctggt
     6721 gtctttaacc cgtgattcgg gagtcacgtg gaagtcaatc agcgcggaat tgccaaaaga
     6781 tttgtgggtg actcgtgtgg ttgcttcggc ccatgaagcc tcgagaatct atgccaccct
     6841 gaacggatac cgatgggatg atttcacccc atatgtctat gtcagtgagg attatggtca
     6901 gtcgtggcgg tcattgagtg acggactgcc tttaggcgca gtaaacgtaa ttcgagaaga
     6961 ccccacccat gccgacttat tgtatttagg aacggatg
//
LOCUS       DPUP01000227           17457 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_5022,
            whole genome shotgun sequence.
ACCESSION   DPUP01000227 DPUP01000000
VERSION     DPUP01000227.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 17457)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 17457)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17457
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..2123
                     /locus_tag="DHV98_08670"
     CDS             <1..2123
                     /locus_tag="DHV98_08670"
                     /inference="COORDINATES: protein motif:HMM:PF07715.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06398.1"
                     /translation="GGFGESQVFLRGFDQVNTAFLLNGQPINGMEDGRMYWSNWSGMA
                     DVAEAVQVQRGLGSSKLAISSVGGTVNIVSKSTEKKEGGFVRMMAGNDSYFKGTVSYN
                     TGVSDSGWAFSALVDHWQGHRKYAIGTAGQGQNYLFSVGYKPNDKHTFNLLLTGAPQW
                     HDQNFSDSLEDYKELGEKQNSNSGFLDGERYTERRNYYHKPVANLNWDFDINETAQLS
                     TVLYASWGRGGGTGSLGSSSNRIRVGGDGANQDEIDFDTIFANNSATGVGNFGNSYHR
                     RASVNNHNWYGLLSNLSLDVADNWDVNIGFDGRTYTGDHFRQLNDLLGLTSYQDNFGT
                     DRPSDYSFTNEYEADPWAALFSSAGEEDRYQYDYSETINYLGGFGQAEYSADGFSAFV
                     QGAVSTQSYQREGRFVGTSGDGLGKSEKVSKLGYNLKGGLGFDIDKQNALFFNSGFYS
                     RQPFLDNIFKDIRNSNVLAFPKVENEEITGLEAGYRLQTNELRFNVDMYYTEWGNRFL
                     SINGPELDPGVFSTYRLTDVTQLHKGIEVDLEYRPKGACYSLTAFGQTGRWEYRGSSP
                     YTLQNDETSTFVDEGEINLTGARVGNAPQTQVGAGLNLDLMKNVTVDFNWIYNKDLYE
                     FVDPSDVAEAAFAGVKYQNERLNPYSLFDGGLTWNFMFGDQKVQFRSNVYNLFNNGYV
                     NQKDPFGYYLGIRRTYNASLRLNF"
     gene            2216..2656
                     /locus_tag="DHV98_08675"
     CDS             2216..2656
                     /locus_tag="DHV98_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007646915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06399.1"
                     /translation="MYPTVQMLHSLLAYVVLILLLVATLNAVVGSIKKSDFSPRDFKL
                     TLWALIATHTQVVLGLVLYFISPLGIKSFSNNGAQVMKDATLRLFAVEHISVMIIAAV
                     LLTIGYAKQKRSEDSAAKFKRISLFYAIALLLILSRIPWTQWLA"
     gene            complement(2653..>2880)
                     /locus_tag="DHV98_08680"
     CDS             complement(2653..>2880)
                     /locus_tag="DHV98_08680"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HCK06400.1"
                     /translation="FDQIILTHNFSTKTSNWRLKSAAIHKANYLVTPHGRFKGYPFRS
                     MQGSKFTGGFSDHFPVYITLIKQDKEEYHAD"
     assembly_gap    2881..3004
                     /estimated_length=124
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3005..>3920)
                     /locus_tag="DHV98_08685"
     CDS             complement(<3005..>3920)
                     /locus_tag="DHV98_08685"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HCK06401.1"
                     /translation="NFFAQAPSPGNDPEKSTPLTRARKVDTPMNAEFNNRRIGVAQEI
                     TIAFYNLENLFHPSDDPVKFDDDRTPEGADRWTYEKYQAKLANMAKAIADIGPVIPSI
                     LGLCELENRQVLHDLLRQEALSAIDYGMIHYESPDLRGVDVGLLYRKSHFNPRNTRSI
                     AVPLYDEEKDKPLWTRDQLLVEGDLFGKPIYVIVNHWPSRSGGKQRSASRRMSAAKVT
                     KRVADSLLRINPQSQIVIMGDFNDNPDDPSIQKVIQSSAYDSRDYIRNSAQGTPNKGA
                     DFYNPLEKMYSAGIGSLAFRDQWFLFDQ"
     assembly_gap    3921..4062
                     /estimated_length=142
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4238..7165
                     /locus_tag="DHV98_08690"
     CDS             4238..7165
                     /locus_tag="DHV98_08690"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06402.1"
                     /translation="MRWIYILLLFAPNLFGQVRLEGRVIDAKRGLPIPHVVIRDSLNR
                     TIEAISEPNGLFRIDISKMGTKTPTENLQQNAVQIEAEIGRRGTKILTLIAEHDNYQT
                     QVIPIDKSHLNAPLVIALQWQVQDQLEVDLSSGISEYDEFVDPGIISGPLNAYGDPLT
                     QAEQFDFGAVFYSPLGAGRHQRGLFFQGMNLRDPVNGSIQWNMLTGLNQAMRYRKNQN
                     QFDPENEGFGQVGGVTYVGVRPDEFNPGTRIKTQWANRSYQWGYSLQQVLPKQNGWSA
                     LGLVSARDGLSGLTQGNSYKAWGGLISIEKQLPNEISLGLMAAYAPLTRGMKAPLTRE
                     VLNLKGHRYNPNWGWQNNHWRNSRERFSRIPIAVFSLYGPQHASMKWAIQLGAVSGVF
                     GQSRLNYSSGANPLGNHYTKMPSYYLSQNQLTSYDYYRSYISRQKFQSDGQIAWPELY
                     AANRLRPLGDSQYLIQNETSRLKEYQVQWNFNWRINQSQNLSVNLSGRWIEQRRYAEI
                     SDLLGGGFYLDRNNFYQGTDPSGQWNNLDSAEQALVKGDKIEYDYSLFGQFYSGFAQY
                     NHALKQGQIAMSLSIDRSSSKRVGHMRHGIFHQAGASLGPSDVEFHHAFRTKLYWAHY
                     WRPKLSSQVAIVYDQELPLLEQTFVYSRYHNARNDINRPPELMGLFGQLRYQSLGFDL
                     VIRPYGHYQRYGRQNGFFYSDQVLSSPEKSGLVQQHLSNLSQLGVGIRSGIKVVMGER
                     LTWTVAHIMSSHRYTGRGKLFLSGTNLVQEQSPNLAAAANRVLSDDFFVEKGNNPLNI
                     TYAPVISDLDRLGARDVFINSYRPSTGPQQILHTSLTYRDPSFWWAGIVWSHFSDRYV
                     GLSALRRSEDAFFQNSNELGPMALEDLRSLWRQEKLPAVTLTSIKMGVSWRLKESFMS
                     IFASVQNLFDRPFVSGGFESSRKVYLPDLSQDQQRPYGPLFGNKYFPGLGRSYYLTCS
                     LNF"
     assembly_gap    7218..7318
                     /estimated_length=101
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <7319..8677
                     /locus_tag="DHV98_08695"
     CDS             <7319..8677
                     /locus_tag="DHV98_08695"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06403.1"
                     /translation="ILFSSCVENQWVPPEKLHEPFVRPAEELILTINDLLGLYQQQIA
                     LEDNPILDLNAHSSKFLTGVVISSDASGNYYKELVIQDRAENSSAGLRVLVDHPSLSD
                     RFAPGHQIYIALQGLDLGPDQEMLTLGIEDGGRIKAFDLDQDYGSRVIRDTLIQPIVP
                     KILPLAALDRSVMNQWIMIEDVQFHRALVSGQNIETFAAGENDRYDGNRLIESCLGSD
                     QLILQTSVFANFQTQKLPQGRGFLQGILQYDYYGEYPVLVINRAEDVVMESPQRCDPE
                     VLQCTDPEGSSRLFQRYDFENVEDLEGLIAAGWRLVSNTSNPLWDFGTYSGNRYLLID
                     GRESDSDTLRTKLISPVIEIPAQTQELTLELDVQVNFAQGIPLSLYIGQVHQDQINWT
                     LLDYTMPIGPANTYGSFQTVGPISINCIASPLVLGLDYSQLSEYDRTRYHLDNIEWRV
                     WP"
     gene            complement(8674..9228)
                     /locus_tag="DHV98_08700"
     CDS             complement(8674..9228)
                     /locus_tag="DHV98_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010523249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HCK06404.1"
                     /translation="MEEEIEFIVDSAHEAMGKVLVHLEKKYTTIRAGKASPAMLNGVM
                     VEYYGNPTPLNQVSNINTPDGMTITVQPFEKSLITEIEKGIMMANLGFNPMNNGESVI
                     ISVPPLTEERRRDLAKQAKGEAEDAKVGIRNERKHANNEIKALDISEDLKKNLEVDIQ
                     ALTDKHIQKIDQIFSNKEAEIMKV"
     gene            complement(9251..9955)
                     /locus_tag="DHV98_08705"
     CDS             complement(9251..9955)
                     /locus_tag="DHV98_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015361645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HCK06405.1"
                     /translation="MTYKRILLKLSGEALMGSQQYGIDPSRLKIYAHDIKAAVDSGVQ
                     VALVIGGGNIFRGVSGVSGGMDRVQGDYMGMLATVINGLALQSALENEGVQTRLQSAI
                     KMNEIAEPFIRRRAVRHLEKGRVVIFGGGTGNPYFTTDSAAVLRAIEIEADVILKGTR
                     VDGIYTSDPEKDATATKFDHISFADVLKRGLNVMDTTAFTLSQENELPIVVFDMNTPG
                     NLQRLLSGEQIGTTVR"
     gene            complement(10065..11030)
                     /locus_tag="DHV98_08710"
     CDS             complement(10065..11030)
                     /locus_tag="DHV98_08710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010177126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HCK06406.1"
                     /translation="MAQITAAQVNELRQKTGAGMMDCKKALVEAEGDFDKAIEVLRKK
                     GQKIAEKRADRDSSEGAVIAKVNDQGNKGVIISLNCETDFVAKNDTYIALAQALAEVA
                     LGTSSLEEFLASDFEGMTVQEKLTEQTGVIGEKIEIGGFKTLEAPFVGSYIHGNKIGA
                     LVGLSSAIDGAAELGKSVSMQVASMGATTLSYKDFDPEFVASETEARIAVIEKDNIEL
                     GRLGKTLKNVPKYISRAQLTDAVLAEAEEAIKAELKAEGKPEQIWDKILPGKLERFIA
                     DNTTLDQEKCLLDQNFIMDDKMNVAQYVASKGDVSVVSFERVSLV"
     gene            complement(11108..11911)
                     /gene="rpsB"
                     /locus_tag="DHV98_08715"
     CDS             complement(11108..11911)
                     /gene="rpsB"
                     /locus_tag="DHV98_08715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008611806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HCK06407.1"
                     /translation="MANNEQVKSLLDAGVHFGHLTRKWNPNMAPYIYMERNGIHIINL
                     YKTAAKIEEANEALKKIAASGRKILFVATKKQAKDIVAEKAKNANMPYITERWPGGML
                     TNFVTIRKAVKKMASIDRMKQDGTFNTLSKKERLAVDRLRAKLEKNLGSITDMSRLPG
                     ALFIVDTTREHIAVKEAQKLNIPIFAMVDTNSDPRPIDYVIPSNDDASKSIDNIMTSV
                     TNAIIEGLAERKAGGAQDESEDTEVVKAETKAPRKRAAVVAAPASTEEE"
     gene            complement(12094..12480)
                     /locus_tag="DHV98_08720"
     CDS             complement(12094..12480)
                     /locus_tag="DHV98_08720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014033140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HCK06408.1"
                     /translation="METIHKIGRRKTAVARVYISKGKGNITVNNRAFDNYFTTPTLRY
                     KVEQPLALTDNEKSFDIKVNVKGGGITGQAEAVRLAIARAMCELNEENRTVLKPEGLL
                     TRDPRMVERKKFGQKKARKKFQFSKR"
     gene            complement(12480..12935)
                     /locus_tag="DHV98_08725"
     CDS             complement(12480..12935)
                     /locus_tag="DHV98_08725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HCK06409.1"
                     /translation="MDTLSYKTVSANKNTVNKEWVLVDADGQALGRLASEVAKLLRGK
                     HKPNYTPHVDCGDNVVVTNAAKVSLSGKKWESKTYIRHTGYPGGQRSLSAKELLAKDP
                     ARVVEKAVKGMLPKNKLGAELFRNLKVYSGEEHGQEAQKPRVINLNDNK"
     gene            complement(13065..>15472)
                     /locus_tag="DHV98_08730"
     CDS             complement(13065..>15472)
                     /locus_tag="DHV98_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCK06410.1"
                     /translation="PVFGGGYETWGIQEVQAKFEVERPEQVIDLLGMMGDSADNIPGF
                     PGVGEKTAKKFIQTYGSLEGLLANTHELKGKMKERVEENAELGRLSKELATILLDVPV
                     DFEPEKLIMEAPDVPAVTALFETLEFRRLTQNFINTFSQSDPSTEHPQGTARSNSNTD
                     TKINAAASENSDNVQTAGSGQFSLFDQVQDQVNSASSRQSLDNTSHHYQTVTPGIALD
                     LLINALSKQEKVAVHLLTDIDDAMNASLIAIGLSYQAHSGYVLTLPQDKNAATTLLRQ
                     LNAFFEDANIEKIGQHLKSSIKILSRYGVQIKGPLFDTMLAHYLINPDMRHDPLVLAE
                     NYLNYRPINPIDLIGRAGKNQKSFWDLSTEEVTNITAEMADITLQLSDYFSDELSQAA
                     TIKLYQDVEIPLLRVLADMELEGINLDTAYLSGLSQTLETDIARLQGTIFKQAGTEFN
                     IASPKQLGEVLFEQMKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIIRDILEFRGLSKL
                     KSTYVDALPNVVNKETGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRAVRKAFI
                     PRNEDYLLMAADYSQIELRIIAALSEESTMIEAFQRGEDIHASTAARVFGIPIEEVTR
                     EQRSHAKTVNFGIIYGVSAFGLSNQTDLSRSESKELIETYYATYPKLKAFIGTQINFA
                     RNHGYVQTISGRRRYLNDINSRNAVVRSAAERNAVNAPIQGSAADIIKIAMIDIHKAL
                     EQGNFKSKMLLQVHDELVFDVYRPEMQELTQLVCQHMQQAYPLAVPLVVDVGQGSNWL
                     EAH"
     assembly_gap    15473..15595
                     /estimated_length=123
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<15596..16058)
                     /locus_tag="DHV98_08735"
     CDS             complement(<15596..16058)
                     /locus_tag="DHV98_08735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007647743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HCK06411.1"
                     /translation="MDSKKRLFLIDAYALIFRGYYAFIKNPRINSQGLDTSAILGFTN
                     SLLDVIKRERPEYLAVCFDKGGSELRQELYTDYKANRDETPEAIKIAVPYIQELLEAM
                     HIPVIVKSGFEADDIIGTLAKKAEKEGFDTYMVTPDKDFAQLVSEHIFMYRP"
     gene            complement(16381..17382)
                     /locus_tag="DHV98_08740"
     CDS             complement(16381..17382)
                     /locus_tag="DHV98_08740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosylasparaginase"
                     /protein_id="HCK06412.1"
                     /translation="MKRRNFIQNTALGGLGVVAGSTAVAGNLENTQNKTPERASTAPY
                     QLPLVIATWNVPNATEAAYNVLYNGGSVLDAVEQGCRVEEANEQGQSVGIGGLPDRDG
                     NVTLDACIMNSEGDYGAVVYLQNIKHPISVARKVMEETPHVIMAGSGAEKFALSQGFE
                     RENLLTEASEKAWKAWLIEAQYKPIINIENHDTIGMLALDSAGNIAGGCTTSGLAYKM
                     AGRVGDSPIIGSGLFIDNEVGGATATGLGEEVLKTVGSFLIVELMRQGRSPQEACEEA
                     IGRIVSKNKKYKDFQVGYIAVNKKGEIGYYSIHEGFSATCYCADQNRNYPSPYFNKS"
BASE COUNT         4400 a         3647 c         3798 g         5122 t
ORIGIN      
        1 ctggaggttt tggagagtct caagtattcc ttcgtggttt tgaccaagta aacacggcct
       61 tccttttgaa cggtcagccg atcaacggaa tggaagatgg tcgtatgtac tggtcaaact
      121 ggtctggtat ggctgatgta gccgaagcgg ttcaggtaca gcgtggttta ggatcttcta
      181 aactagccat ctcttctgta gggggtacgg taaacatcgt ttctaaatct actgaaaaga
      241 aagaaggtgg atttgttcgt atgatggctg gtaatgacag ttattttaaa ggaacagtga
      301 gctataacac aggtgttagc gacagtggat gggccttttc tgccttagtt gaccactggc
      361 aaggacacag aaaatatgca atcggtacgg caggtcaagg gcaaaactat ttgttctctg
      421 taggatacaa gcctaatgat aagcacacat tcaacttgtt gttgactgga gctcctcagt
      481 ggcacgatca aaacttctct gattctttgg aagactataa agaacttggt gagaagcaaa
      541 actcaaactc tggtttcttg gatggtgagc gttacactga gcgtcgtaac tactaccaca
      601 agccagtggc taacttgaac tgggattttg acattaatga aacagctcaa ctttctaccg
      661 tactttacgc ctcttggggt cgtggtggtg gaacaggaag tcttgggagt agcagtaacc
      721 gtatccgcgt aggtggtgat ggtgcgaacc aagatgagat tgatttcgat accatttttg
      781 ccaataactc agcaacagga gtaggtaact tcggtaattc ttatcaccgt cgtgcttcag
      841 taaacaacca caactggtat ggtttgcttt ctaacttaag ccttgatgtt gccgacaact
      901 gggatgttaa tatcggtttt gatggaagaa cttacactgg agatcacttc cgtcaattaa
      961 atgatctttt aggattaact tcttatcaag ataactttgg tactgatcgt ccaagtgact
     1021 atagttttac taatgagtac gaagctgacc catgggctgc tttatttagc tctgccggag
     1081 aagaagaccg ttaccagtat gactattctg aaaccattaa ctacttaggt ggatttggtc
     1141 aagcagaata cagcgctgac ggattctcag cttttgtaca aggggcggtt tcaacgcagt
     1201 cttatcaaag agaaggtcgt tttgtaggaa cttctggaga tggtcttgga aaatctgaaa
     1261 aagtatcaaa attaggatac aaccttaaag ggggtcttgg tttcgatatc gacaagcaaa
     1321 acgcgttatt cttcaacagt ggtttctatt ctagacaacc attcttggac aacatcttta
     1381 aagacatccg taattcaaat gtgttggcgt ttccaaaggt tgaaaatgaa gaaatcactg
     1441 gtcttgaggc tggataccgc ttacagacaa acgaacttcg tttcaatgta gacatgtact
     1501 acacagaatg gggtaaccgt ttcttgtcta tcaacggacc agagcttgat ccaggtgtct
     1561 tctctactta tcgcttaacc gatgtaacac aattacataa aggtattgag gtagacttag
     1621 aataccgtcc aaaaggggca tgctactcat taactgcttt cggtcagact ggtcgttggg
     1681 aatacagagg atcatctcct tacacgctac agaatgacga aaccagtaca tttgtagatg
     1741 aaggtgaaat caaccttact ggagcgcgtg tgggtaatgc ccctcagact caggttggtg
     1801 ctggtttaaa tcttgatcta atgaagaatg tcactgtaga cttcaactgg atttacaaca
     1861 aggacttgta tgagtttgtt gatccatctg atgttgctga ggctgctttt gccggagtga
     1921 agtatcaaaa tgagcgtttg aacccttaca gcttgtttga tggaggtttg acttggaact
     1981 tcatgtttgg agatcaaaaa gttcagttcc gtagcaacgt ttacaacttg ttcaacaatg
     2041 gatacgtaaa ccaaaaagat cctttcggat attacttggg tattcgtaga acgtacaacg
     2101 ctagcttgcg tttgaatttc taattcaaga gaatgattag aaaaaccgcc tctcgtagag
     2161 gcggtttttt tttgcgttca attctctatc tttgagaaac caaaaattaa tagatatgta
     2221 tcctactgtt caaatgttgc actccctttt ggcctatgtg gttttgattt tactgctcgt
     2281 agcgacgctc aatgccgtgg taggctccat caaaaaaagt gacttttcgc ctcgtgattt
     2341 taaattaacc ttatgggcgc taatcgccac gcatactcaa gttgttttgg gcctggtgtt
     2401 gtactttatt tccccattag ggattaaatc atttagcaac aatggggcac aggtcatgaa
     2461 ggatgcgacc ctgcgtcttt ttgccgtaga gcatataagt gttatgatta ttgctgctgt
     2521 gttgcttact attggctacg ctaaacaaaa gcgctcagaa gacagtgccg ctaagtttaa
     2581 acgcattagc ctattttacg ccatagccct tctcctaatt ttgagtcgta ttccatggac
     2641 gcaatggctc gcttagtctg cgtggtattc ttccttatct tgttttatta gggttatata
     2701 aaccgggaaa tgatcgctga atcctcccgt gaatttactg ccttgcatac tgcgaaaggg
     2761 atatccttta aagcgtccgt ggggcgtaac taaataattg gccttgtgta ttgctgctga
     2821 ttttaatcgc cagtttgaag ttttagtgga gaaattatgg gttaaaatta tttgatcgaa
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnatttga tcgaacaaaa accattgatc gcgaaaagcc aaactgccga tgccagcgga
     3061 atacattttt tccaggggat tataaaagtc agcgccttta ttgggggtgc cttgggcgct
     3121 gtttctgata tagtcccggg aatcataggc acttgattgg atcacctttt gaatgctggg
     3181 gtcatcagga ttatcgttaa agtcgcccat aattacaatt tgactttgtg gattaatccg
     3241 aagaagagaa tccgccaccc gttttgtgac cttggctgcg ctcatacgcc tggacgcgct
     3301 tctttgcttt ccgccactgc gcgaaggcca gtgatttact atgacataaa ttggttttcc
     3361 aaataggtcc ccctctacta agagctgatc ccttgtccaa aggggtttgt ctttttcttc
     3421 atcatataag ggcacagcaa tggagcgtgt gttccgcgga ttaaaatggg actttcgata
     3481 aagcagtccg acatcgacgc cccgcaaatc gggactttca taatgaatca tgccataatc
     3541 aatagcgctt aaggcttcct ggcgcaacaa atcatgaagt acctgtctgt tttcgagttc
     3601 gcataagcct aatattgatg gaatcaccgg gccgatgtct gcaatggctt tagccatatt
     3661 ggcgagcttg gcctggtatt tttcataggt ccatcgatca gcgccttcgg gagttctatc
     3721 atcgtcaaac ttcacggggt cgtcacttgg gtgaaataga ttctctaggt tgtaaaaggc
     3781 gatggttatt tcttgcgcta ccccaatacg ccggttattg aactcagcgt tcatgggcgt
     3841 atcaaccttc ctcgcgcggg ttaatggggt gctcttctct gggtcattgc ctgggcttgg
     3901 ggcttgggca aaaaagttca nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnttgggcaa aaaagttcaa
     4081 gggtaaatag aggcagaggg caaggcactt gatattcata aattgtcgtt tgtgtattct
     4141 taaaaggagg catcaaggta gacgagaatt cgaaattatt ttgtgaatag tttagcttag
     4201 actgctgaaa acttcccaga ggtaatccat atattccatg cgctggattt atatacttct
     4261 gctttttgcc cccaatttat ttggacaagt acgccttgag gggcgtgtta ttgatgccaa
     4321 gcgcggcttg ccaatacccc atgtagtcat cagagattcc cttaatcgaa ccattgaggc
     4381 catcagtgaa cccaatggct tgtttagaat cgacatttct aaaatgggaa caaaaacgcc
     4441 tacggagaac ttgcaacaaa atgcggttca aattgaagct gaaataggcc gcaggggcac
     4501 taaaatttta acgcttatag cggaacacga taattatcaa actcaggtta ttcccataga
     4561 caaaagtcat ttaaacgctc ccctggttat tgccttgcag tggcaagttc aagatcagct
     4621 agaggtggat ctctcgagcg ggatttcaga gtatgatgaa tttgtcgatc caggcattat
     4681 ttcaggtccg ttaaatgcct atggtgaccc attaactcaa gccgaacaat ttgactttgg
     4741 cgccgttttt tatagtccct tgggtgcggg ccgtcatcag cgtggattgt tttttcaagg
     4801 aatgaatttg cgagaccccg taaatggatc gatacaatgg aatatgctga ctggtttaaa
     4861 tcaagccatg cgttatcgca aaaatcaaaa tcaatttgat ccagaaaatg aaggtttcgg
     4921 acaagtgggc ggggtaactt atgtcggggt gaggcctgac gaatttaatc cagggacaag
     4981 aattaaaacc caatgggcta accgaagtta tcaatggggc tatagtcttc aacaggtact
     5041 tcccaagcaa aatggatggt ctgcgttggg acttgtttcc gcgcgtgacg gtttgagtgg
     5101 cttgacccag gggaatagtt acaaggcgtg gggcggtttg atttctattg aaaagcagct
     5161 ccctaatgaa attagtttag ggctcatggc ggcttatgct cccttaacca gggggatgaa
     5221 ggctccgcta actcgagaag tgttgaattt gaaaggccac cgctataatc ccaattgggg
     5281 atggcaaaac aatcattggc gcaattctag agagcgattc agccggatac ccatagcggt
     5341 atttagtctt tatggcccgc agcacgcttc aatgaaatgg gcgatccaac tgggtgcagt
     5401 ctctggggtg tttggacaaa gccgtctcaa ttattcctcg ggagcgaatc cattgggtaa
     5461 tcattacacc aaaatgccga gttattattt gagtcaaaat cagctcactt cttatgacta
     5521 ttatcgttcc tatataagcc ggcaaaagtt tcaatctgat ggacaaatcg cttggccgga
     5581 actctatgcg gcaaatcgtt tgcggccttt aggggacagt caatatttaa ttcaaaatga
     5641 gacgagtagg ctcaaagagt atcaggtgca atggaatttt aattggcgca ttaatcaaag
     5701 ccaaaatctc agcgttaacc tatcaggtcg ttggattgag cagcggcgct atgctgagat
     5761 ttccgacttg ttagggggtg ggttttacct ggatcgcaat aatttctatc aaggcactga
     5821 tccatctggg cagtggaaca acctcgattc agcagagcaa gctttggtaa agggcgataa
     5881 aatagagtat gattacagtt tgtttgggca gttctacagc ggttttgcac aatataacca
     5941 cgcattgaag caaggtcaaa ttgccatgag tctgtcgatc gaccgcagta gctcgaagcg
     6001 ggtgggacat atgcggcatg gtatttttca tcaggcgggg gcttccttag gcccgagtga
     6061 cgttgaattt catcatgcgt ttagaactaa gctttattgg gcccattatt ggcgccctaa
     6121 actcagcagt caggttgcta tagtctatga tcaagaattg ccattattgg agcagacctt
     6181 tgtttattcg cgctaccata atgcccgaaa cgacattaat cgcccccctg agctcatggg
     6241 acttttcggg cagttgaggt atcagtctct gggatttgat ttggtgatca ggccctatgg
     6301 gcactatcag agatacggcc ggcaaaacgg atttttttat tctgaccagg tccttagctc
     6361 accagaaaaa agcggtttgg ttcagcaaca tttatcgaac ctcagtcaat tgggtgtggg
     6421 aatccgctcg ggaataaagg tcgtgatggg cgaacgtttg acctggactg tggcgcatat
     6481 catgagtagc catcgctata caggaagggg gaaactattt ctctcaggga ctaatcttgt
     6541 tcaggagcag tctccaaatt tagcggccgc tgcgaaccgt gttcttagcg atgacttttt
     6601 cgtagaaaaa ggaaataatc ctttaaatat cacttatgcc cctgtaatct cggaccttga
     6661 tcgtttgggt gctcgtgatg tttttatcaa ttcatatcgc ccatcaacgg ggcctcagca
     6721 gattctgcac acaagcttaa cctatcggga tccttccttt tggtgggccg gaattgtttg
     6781 gtcacatttc tcagatcgat acgttgggtt gagcgcacta agacgaagtg aggatgcttt
     6841 ttttcagaat tcaaatgaat taggcccaat ggccttggag gacctcagat cgttatggag
     6901 acaagagaaa cttcctgcgg tgaccctcac ttcaataaaa atgggggtgt cgtggcgctt
     6961 aaaagagtcc ttcatgagca tttttgcctc ggtacaaaat ctttttgatc gaccgtttgt
     7021 ctctggtggc tttgagagtt cgagaaaggt ctatctccct gatttgtccc aagaccaaca
     7081 gcggccctac ggcccactct ttggaaataa atattttccc ggccttggcc gcagttatta
     7141 cctcacctgt tcattaaact tttaaatatg ttatttaatt caattaaaca atggcttatt
     7201 cttagcccaa ttttatannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnat
     7321 tttatttagt tcttgtgtcg aaaaccagtg ggttccgcca gaaaaattac acgagccatt
     7381 tgttcggcct gcggaagagc tgatcttgac gattaatgat ttattgggtt tatatcagca
     7441 acaaatagct ttagaggaca atcctatatt agatttaaac gcacactcat ctaagtttct
     7501 aacgggggtt gtgatatcga gtgatgcatc gggaaattac tacaaggaac tcgttatcca
     7561 agatcgggca gagaattcaa gtgctggttt gagagttttg gtcgatcacc catctttaag
     7621 tgatcgtttt gcgcccggtc atcagattta tattgccttg cagggccttg acctcgggcc
     7681 cgatcaggaa atgttgaccc tagggataga agatggtgga agaataaagg cctttgatct
     7741 tgatcaagac tacggctcca gggtgatacg tgacacgcta atccaaccga ttgtcccgaa
     7801 aattttgccg ctggcggcac ttgatcggtc tgtgatgaat caatggatca tgattgagga
     7861 tgtccagttt catcgggcct tggtgagcgg tcagaatatt gagacatttg ccgctgggga
     7921 aaatgaccga tatgatggaa atcggctgat tgagtcttgc ctagggtccg atcagttgat
     7981 actgcaaacc agtgtttttg ccaattttca aacacaaaaa cttccgcaag gacgaggatt
     8041 tctccaagga atattgcagt atgattatta tggagaatat ccagttttgg tgatcaatcg
     8101 tgctgaggat gtggtgatgg aatcgccgca acgatgcgac ccagaggtcc ttcaatgcac
     8161 agatccggag ggttcgtcac gactttttca acgatatgat tttgaaaatg tggaggattt
     8221 ggaaggactt atagccgctg gttggcgcct tgtctccaat acatcaaatc cattgtggga
     8281 tttcggaact tactctggga accgttatct tttaatcgat gggagagaaa gcgactcaga
     8341 taccttgagg accaaactca ttagcccagt gattgagata cctgctcaaa cgcaggagct
     8401 cactcttgag ctagacgtcc aggtcaattt cgctcaaggc ataccgttgt ctttgtatat
     8461 tgggcaagtt catcaggacc agataaattg gactctgtta gattatacta tgcccattgg
     8521 gccagcgaat acttatggaa gcttccagac agtagggccg atcagcataa actgtatcgc
     8581 ctcacctctt gtattagggc ttgattatag ccagttatca gagtatgatc gcacgcgtta
     8641 ccaccttgac aatattgaat ggcgggtgtg gccttaaacc ttcatgattt ccgcttcttt
     8701 attgctgaaa atctgatcga ttttttggat gtgcttgtcg gtaagtgctt gaatatcgac
     8761 ttcgagattc ttttttaagt cctcagagat atcaagcgct ttgatttcat tattggcatg
     8821 cttgcgttcg ttgcgtatac cgaccttggc atcttcagcc tcgcctttgg cttgcttggc
     8881 taaatctcgt ctgcgctctt cggtaagggg cggaacactg ataattacac tctcgccatt
     8941 gttcatcggg ttgaacccga gattggccat catgatccct ttttcgattt ctgtaatcaa
     9001 ggacttttca aagggctgta cagttatggt catcccatcc ggggtattga tattcgatac
     9061 ttgattgagt ggtgtagggt tgccgtaata ttcaaccata acgccattaa gcatcgctgg
     9121 tgaggctttg cctgcacgta tagtcgtgta ttttttctcc aaatgaacca atactttacc
     9181 catagcctcg tgggctgagt caacgataaa ttctatctct tcttccatga taaatgactt
     9241 tttaaaacgc ttaacgaacc gtagttccta tttgttctcc tgagagtaaa cgctgcaaat
     9301 ttcctggtgt attcatatcg aaaaccacaa tgggtaattc gttttcttgg cttaaggtaa
     9361 aggctgttgt gtccataaca ttcaacccgc gcttgagcac atcggcaaag gatatgtgat
     9421 caaattttgt ggccgtagcg tccttttctg gatcacttgt gtaaatacca tcgacacgag
     9481 ttcctttgag aatcacatct gcctcaattt caatggcccg taatacggca gcggaatctg
     9541 ttgtaaaata aggatttccg gttcccccgc caaaaattac cacgcgtcct ttttcaagat
     9601 ggcgtacagc gcgacgtcta ataaatggct ctgcgatttc attcattttg atcgcacttt
     9661 gaagtcgtgt ttgaactcct tcgttttcta aagcactttg caaggccaga ccattaatca
     9721 ccgttgccag catccccata taatctcctt gtacgcggtc catgccacca ctcactcctg
     9781 aaaccccgcg aaaaatatta ccaccaccga tcaccagtgc gacttgtacg ccagaatcaa
     9841 ccgccgcttt tatgtcatga gcataaattt ttagtcgact tggatcaatt ccatattgtt
     9901 gacttcccat tagagcttct ccggagagtt taagtaagat gcgtttatag gtcatagtgg
     9961 taattttcac tgacaaaagt aattaaaaat tgtggatcca tagggtgtaa aaaaaccgcc
    10021 aaaaggagcc ttttggcggt ttgaaaattg tgttctgttt tgaattacac caaagacacg
    10081 cgctcgaatg aaaccacaga tacatcccct ttgctggcga cgtattgggc gacattcatt
    10141 ttgtcatcca tgatgaagtt ttgatccaaa agacatttct cttgatctaa agtagtattg
    10201 tctgcgatga agcgctcaag tttccctgga agaattttat cccagatttg ctcaggcttg
    10261 ccttctgctt ttaattctgc tttaattgct tcctctgcct cagccaatac agcgtctgta
    10321 agttgcgcac gagagatata ctttggaacg tttttcaagg tttttcctaa gcgtccgagt
    10381 tcgatattgt ctttttcaat aacagcaatt cgagcctcag tttctgaagc gacaaattct
    10441 ggatcgaaat ctttgtaaga aagtgttgtt gcgcccatag aagctacctg cattgaaaca
    10501 cttttaccga gctcagcagc accgtcaatg gcgctggaaa gccctactag ggcaccgatt
    10561 ttatttccgt ggatgtaaga tccaacgaaa ggtgcctcaa gggttttgaa tccaccgatt
    10621 tcgatttttt cgccgataac cccggtttgt tcagtcaatt tttcttgaac agtcattcct
    10681 tcaaaatccg aagccaaaaa ttcttccagg ctgctcgtac ctaaagcaac ttcagctaaa
    10741 gcttgagcaa gcgcgatgta agtatcgttt ttagcaacga aatcagtttc acagttcaaa
    10801 gaaataatca ctcctttatt gccttggtcg tttaccttag caataactgc gccttcactg
    10861 gaatcgcggt ctgcacgttt ttcggcaatt ttttgacctt ttttgcgcag cacttcgata
    10921 gctttgtcaa aatcaccttc ggcctcaacc aaagcttttt tgcaatccat cattcctgca
    10981 ccagtttttt gtcttaattc gtttacctga gcggctgtaa tttgtgccat tttttttaat
    11041 ttttatagtc gcctcaaggt ttttagaccc agaggcgttt ttggttaaaa actataatga
    11101 ttgataatta ttcttcttca gtgcttgctg gagcagcaac tacggcagca cgtttgcggg
    11161 gcgccttagt ttctgctttt acgacttctg tatcctcgct ttcatcttga gctccaccgg
    11221 ctttgcgctc tgccaatcct tcaatgatgg cattggttac gctggtcatg atgttgtcaa
    11281 tggacttgga ggcatcatcg ttcgatggaa ttacataatc aataggacgt gggtcactat
    11341 tggtatcgac catagcaaaa ataggaatgt tcaatttctg agcttcttta acggcgatgt
    11401 gttcacgcgt tgtgtccaca ataaataagg cccctggaag acgactcatg tcagtgatag
    11461 aaccaaggtt tttctcgagt ttcgcacgaa gacgatctac ggccaagcgc tctttcttag
    11521 aaagcgtgtt gaaggttccg tcttgtttca tgcgatcgat agaggccatt ttcttaacgg
    11581 ccttacgaat cgttacgaaa ttggtcagca taccaccggg ccagcgctca gtgatgtaag
    11641 gcatattggc attctttgct ttttcagcaa cgatgtcttt agcctgtttt tttgtggcga
    11701 caaaaagaat tttgcgtcca cttgctgcga ttttcttcaa agcttcgttc gcttcttcga
    11761 ttttagcagc agttttgtaa agattgatga tgtggatccc gttgcgctcc atataaatgt
    11821 aaggcgccat gttcggattc catttgcggg taaggtgtcc aaagtgtaca cctgcgtcaa
    11881 gtaacgactt gacttgttcg ttgtttgcca ttttgtttta gtttacgttc tgtttagata
    11941 gcaacccaag aggacttgtg gtttagatgc taaactaaca cacactttgg attgtttttg
    12001 gcgtccaaag gcgttaacag cttgattaat aaatatagga acatagtcat ttcgcagttc
    12061 cgggccggag cccagaactg gaaatgaatt atattaacgt ttagagaact ggaatttctt
    12121 acgggctttc ttctgtccga atttcttgcg ttccaccatt ctcgggtcac gggtcaataa
    12181 accttctggc ttaagaaccg ttctgttttc ttcatttaat tcacacatag cacgggcaat
    12241 cgctaagcga actgcttctg cttgtcctgt aattccgcca ccttttacgt ttaccttgat
    12301 gtcgaatgat ttctcattat cggttaaggc aagcggttgc tctactttat agcgcaaggt
    12361 aggtgttgtg aaatagttat caaatgcgcg attgttgacc gtgatgtttc cttttccttt
    12421 agaaatatac acacgtgcaa ccgcggtttt tcttcgtcca attttgtgaa tcgtctccat
    12481 tacttgttgt cgttaaggtt aattactctc ggtttttgcg cttcttgtcc gtgttcttca
    12541 ccagaataaa cttttaggtt gcggaataac tcagcaccta atttgttttt tggcaacata
    12601 cctttaacgg ctttctcaac aacacgagca ggatctttag cgagcaattc ttttgccgac
    12661 aacgatcgct gacctccagg ataacctgtg tggcgaatgt aagttttaga ttcccatttc
    12721 ttgccagata gacttacctt ggctgcatta gtaaccacta cattgtcccc gcaatcaacg
    12781 tgaggggtgt agtttggttt gtgttttcca cgaagtagct tagcaacttc actggcaaga
    12841 cgacccaatg cctggccgtc cgcatcgacc aaaacccact ctttatttac agtgtttttg
    12901 ttggcagata ctgttttgta acttaatgtg tccattcagt tttttgtcaa atagttaata
    12961 atcattgaat ttccctcttt tgagggccgc aaatgtaagt ctaaaaattg taaatacaaa
    13021 ccaacacagg ccaaaagtta aacgccacga ataatagggc taaatcagtg ggcctcaagc
    13081 cagttactcc cttggccaac atcgactaca agtggaaccg ctaaggggta ggcttgttgc
    13141 atgtgttggc acaccaattg cgttaactcc tgcatttcag gtcgataaac atcgaagaca
    13201 agttcatcgt gtacctgaag cagcattttg cttttgaaat tgccttgctc gagcgcttta
    13261 tgaatgtcaa tcatggcaat ttttatgatg tctgcagcgc tcccttgaat cggcgcgttg
    13321 actgcatttc gttctgcagc actgcgaacc accgcgtttc ggctgttgat gtcattaaga
    13381 taacggcgtc ggccagaaat agtttggaca taaccgtggt tccgggcaaa attaatttgt
    13441 gtcccaataa aggctttgag cttgggataa gtggcatagt aagtttctat gagctcttta
    13501 gattctgatc ggcttaaatc ggtttgattg ctcaaaccaa aagccgaaac gccataaata
    13561 attccaaagt tcactgtttt ggcatgactt ctttgctctc gagtcacttc ctcaatcgga
    13621 attccaaaga cgcgcgctgc tgtggaggcg tggatatctt caccgcgttg aaatgcctca
    13681 atcatggtgc tttcttcaga gagtgcggca ataatgcgca gttcaatttg ggagtaatct
    13741 gcggccatca ggagatagtc ttcatttctc gggataaatg ctttgcgcac ggcgcgtcct
    13801 cgctcggtcc gaattggaat gttctgaaga ttcggattgt tgcttgaaag gcgtcccgta
    13861 gcggcgacgg tttgcatata gtccgtatgg actcgcccag tttctttgtt gaccacatta
    13921 ggcagggcat cgacataggt gcttttgagc tttgacagac ctctaaattc aagaatgtca
    13981 cgaataattt gatggtcctt ggctaggtag gacaatacat cttcagcggt cgaatactgg
    14041 cctgttttgg ttttctttgg cttatccacc aatttcattt gttcaaacaa aacttcgccc
    14101 agttgtttgg gagaggcaat attgaactcg gtccctgctt gtttgaaaat agtgccttgc
    14161 aatcgggcaa tatccgtctc caaagtttgc gagagaccgg agagatatgc cgtgtccaaa
    14221 ttgatgccct cgagttccat atcggccaaa acacgcaata atggaatttc tacgtcttga
    14281 tagagcttta tggtggctgc ctgacttaat tcgtccgaaa aataatcgct taattgaagg
    14341 gtgatatcgg ccatttcggc agtgatattc gtgacttctt cggtgctcaa gtcccaaaag
    14401 gacttttgat tttttccagc tcttccgatc aagtctattg gatttatagg cctgtaattt
    14461 agatagtttt cggccaaaac taacggatcg tggcgcatgt cgggattgat cagataatga
    14521 gccaacatgg tgtcaaataa aggccctttt atttgaaccc cataccgaga taaaatcttg
    14581 atgctcgact ttaagtgctg accaattttt tcaatgttcg catcctcaaa aaatgcattg
    14641 agttgccgaa ggagtgtcgt cgcggcattt ttgtcctggg gaagcgtcaa tacatatccg
    14701 ctgtgcgctt ggtaactgag tccaatagcg atcagggatg cgttcatggc gtcatcgata
    14761 tcggtcaaaa gatgtacggc gactttttct tgttttgata atgcattgat caataaatca
    14821 agcgctattc ccggagtaac ggtttgatag tggtggctgg tattgtctaa actttgtctg
    14881 ctagaggctg aattcacctg atcttgaact tgatcaaaaa gcgaaaattg tcctgagcca
    14941 gcagtttgca cattatcgct gttttccgaa gcggcagcat taattttagt gtccgtgtta
    15001 gaatttgatc gagcggttcc ttgcggatgt tctgtagaag ggtctgactg cgaaaatgta
    15061 ttgataaaat tttgagtgag tcgacgaaat tctagagttt caaataacgc ggtcactgct
    15121 ggtacatctg gggcctccat aatgagtttt tctggctcaa aatcgaccgg cacatcaagg
    15181 agtattgtgg cgagttcctt ggacaatcgg ccgagttctg cgttttcttc aacccgctcc
    15241 ttcattttgc ctttgagctc atgagtattg gccagtagcc cttccagcga gccataggtt
    15301 tgtataaatt ttttggctgt tttttcgcca acaccaggga agccagggat gttgtctgca
    15361 gaatcaccca tcatccccag taaatcgatc acttgttctg ggcgctcgac ttcaaatttt
    15421 gcttgaactt cctgtatgcc ccacgtttca taaccaccac caaaaacagg acnnnnnnnn
    15481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    15541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncagga
    15601 cgatacataa aaatatgttc cgaaaccaat tgggcaaaat ctttgtcggg ggtgaccatg
    15661 taggtgtcga acccttcttt ttccgctttc ttagctaggg ttcctatgat gtcatcggct
    15721 tcgaatccag attttacaat aactggaata tgcatggctt cgagaagctc ttggatatac
    15781 gggaccgcta ttttaatcgc ctccggggtt tcatctcgat tcgccttgta atccgtgtaa
    15841 agttcctgcc gtaactcact tcctccttta tcaaaacaca cggcaagata ttcagggcgc
    15901 tctcgtttga tcacatccaa aagtgaattg gtaaacccca aaatagcaga ggtatcaaga
    15961 ccttgactgt tgatacgcgg atttttaata aaagcataat atccgcgaaa aatcaaggca
    16021 taagcatcga tcaaaaaaag tcgtttttta gaatccatag ggtgcagtac taaggcttaa
    16081 agctacaaaa cttatgccct cttggtcaaa ctttatttcc actaaatctg agagaaactt
    16141 gagggggtat aaaatgaaaa gtcaccacat atgtgatgac ttttcgcccc aaatttgatt
    16201 aaccccaaga ggggttaacc tacttataag cgacaaaatt agcgaaaaaa aaccacttac
    16261 tattgataaa tatcattttt tcaataatta atcgccacac aattaattta attcaatcct
    16321 tgaatgcgtt attgaacaaa acgcaatcaa aagccctcaa ttgtttttgc gggcaaattt
    16381 ttaagatttg ttaaaataag gactcggata atttcgattt tgatccgcac agtagcaggt
    16441 ggccgaaaat ccttcatgta tgctgtaata gcctatttca ccctttttat ttacggcgat
    16501 ataaccgacc tgaaaatcct tgtatttttt atttttagaa acaattctac cgatcgcttc
    16561 ttcacaggct tcttgtggac tgcgcccttg acgcataagt tctacgatca aaaaactccc
    16621 taccgttttt aggacttctt ctccaagccc cgtagcggtt gccccaccta cttcattatc
    16681 gataaataag cctgaaccga taatgggtga atctccgaca cgaccagcca ttttataggc
    16741 cagcccgctg gtggtgcacc cccctgcgat attcccggct gagtctaagg cgagcatgcc
    16801 tatggtatcg tgattttcta tgttgattat gggcttgtat tgtgcttcga tcaaccacgc
    16861 tttccacgct ttttctgaag cttcagtgag taaattttcc cgctcaaacc cctgactgag
    16921 ggcaaatttc tctgcaccac tgcccgccat gattacatgc ggggtttctt ccataacctt
    16981 gcgcgccaca gagatgggat gtttgatatt ttgaaggtag accacagcgc cataatctcc
    17041 ttcagaattc ataatacaag catctaaagt cacattgcca tcacgatcag gcaaaccgcc
    17101 gatccccaca ctttggccct gctcattagc ctcctcaacg cgacagcctt gctctacggc
    17161 atcaaggact gatccgccat tatataagac attatatgcg gcctctgtcg cgttaggcac
    17221 attccatgtc gcgatcacta agggaagttg atagggtgcc gtcgatgcgc gctcaggcgt
    17281 tttattttga gtattttcaa gattcccagc tacggccgtg gatcctgcga cgacgccaag
    17341 accacccaag gctgtatttt gaataaaatt tctgcgtttc ataatttatt tgattgttat
    17401 ttcatcagca aataaccaag cctccccgcc ataacccaaa tgccagggcg gtaatgt
//
LOCUS       DPUP01000228           14937 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_1957,
            whole genome shotgun sequence.
ACCESSION   DPUP01000228 DPUP01000000
VERSION     DPUP01000228.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14937)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14937)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14937
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..1006
                     /locus_tag="DHV98_08745"
     CDS             <1..1006
                     /locus_tag="DHV98_08745"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06413.1"
                     /translation="ATLAWYGNADYLNYPFKFDHISARADLLSVFHFGINKKIDRKWT
                     VGGRLKLYNSILAGSSLNNRGSFTTRLSDGDSQNIYAQDLNKANVSIQTSGLSRFEGN
                     VTSSDLLSAGLFGGDLGLGIDVGATYQYDDAWRFSGSILDIGAIVHASDVKTYQASGD
                     YILEGIELDFPALSQGQNAPPYYAIFENEIEAAVPIDTLYSAYTQWRPVKMNLAASYG
                     FGPTAPGSVACNCSGKGDAYQLESEVGVQFYAIKRPKAIQTALSLFYVRRLLRNLTLK
                     STWTMDALSWTNLGLVAVSDLGPINVYLAADHLLTYSNLAKARGASIQFGINVKLERR
                     "
     gene            1003..1857
                     /locus_tag="DHV98_08750"
     CDS             1003..1857
                     /locus_tag="DHV98_08750"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06414.1"
                     /translation="MRYLIISVIFFLITTASNRIAAQQERLSAFDYVVVPDRFDFQYE
                     RDQYQINSLLKFLFNKHGFHAFFPSELPDVSRCDGLYAEIEQVNGFVWTEVSIRLLDC
                     DGILFYQTKSGRSKLKDFAKAYSESIRMAFESIEILGVRQGPLEILQKGGQDSNSEET
                     IAPDAKANPKSNSDRPLGSNSSEGLQTELKPLKNEAVTLGLIPDVAMMNFKSFEKTYL
                     LRRTDLGYQWYREDGQDLIYEGKFFVVEKMLFYEDKDQMRYLAEFTPQGALILNREGQ
                     RVVFEKAN"
     gene            complement(1854..>2526)
                     /locus_tag="DHV98_08755"
     CDS             complement(1854..>2526)
                     /locus_tag="DHV98_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014679525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCK06415.1"
                     /translation="FELLVMPNEAVSIEITDAYVKAQFDQLGVRYDKSGDQHYDIASA
                     MIKSIRGSDPNAALYWLSRMLIGGESLSFIARRLIISAAEDIGLANPTALIMAQSTHQ
                     AIQTVGLPEARIVLGQCILYLAMSPKSNSAYQAINKAMNLAKETAHLPVPIHLRNPAN
                     KITKDLGYGADYQYDHDTPNGCVQQNFLPEELKEVRIYRPSARTKEQQSFAEFQKMWS
                     GKYPI"
     assembly_gap    2527..2646
                     /estimated_length=120
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2647..3271)
                     /locus_tag="DHV98_08760"
     CDS             complement(<2647..3271)
                     /locus_tag="DHV98_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007136583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCK06416.1"
                     /translation="MNIPLAERMRPVILGDYIGQKHLIGPHGALRPQLDSGLIASMIL
                     WGPPGTGKTTLAGLLAKETKREIYNISAIDSGVAKVREVIQKAKDRSGLFVQSNPILF
                     IDEIHRFSKSQQDALLGAVEKGWVTLIGATTEQPSFEVIPALLSRCQVYTLNALNEED
                     LLSLLQRALQTDSELKRKTVHLMETKVLIQSCGGDARKLLNTFELLVM"
     assembly_gap    3379..3497
                     /estimated_length=119
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3502..4311
                     /locus_tag="DHV98_08765"
     CDS             3502..4311
                     /locus_tag="DHV98_08765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HCK06417.1"
                     /translation="MPFNWSVLIVPIAFVLSLWVVFWVEIRFGIRFKNFGIFPGKVEG
                     LWGILTGPWIHSGLSHLSNNSLPMLFLLAALFYFYKPIALRVFLIGLILTGLTTWIIG
                     RPSWHIGASGLIYMLLAFIFFKGIQSRIYPLVAVALTVVFLYGGLFWYLFPLDPKISW
                     EGHSAGFIIGLLLALYYRKQESHLYETYIWQSEDFDPNQDAFMRQFDEQGQFNPEVQD
                     DENQSTQEACGVKAADIKNRADRESITEDDSKIGDNVGIKVNYTYRSNNKN"
     gene            complement(4308..5045)
                     /locus_tag="DHV98_08770"
     CDS             complement(4308..5045)
                     /locus_tag="DHV98_08770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017495032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCK06418.1"
                     /translation="MKKDDFIFGYYPVLEALEAGATLDKIFIQQGSDSHRFESIIKIA
                     AERDIPVNLVPLVKLDKLTRSNHQGIVAYLSPISFVTLEELISAQEEKESPGLFIVLD
                     QLTDARNFGGIIRTAECTGVSGIIIQKTGGAPVNADTVKTSAGAVFNVPICKVDHVKD
                     AIFYLQGSGYKVFGASEKATENYFNSDYKAPVAIVLGSEGKGINKSVLGLLDGLISIP
                     MVGKTKSLNVSVAAGAILFEVLRQRTF"
     gene            complement(5127..6038)
                     /locus_tag="DHV98_08775"
     CDS             complement(5127..6038)
                     /locus_tag="DHV98_08775"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06419.1"
                     /translation="MKKNYFFAALFAFALTSVSAQFADDMESYTPGQTVYENWWTDWG
                     CGGTCAGLASDAYAQSGSVSFFVDGSGMDPVLDLGNKIFGTWFYTSYMYIPSGKEGYM
                     NVQGTVPIGGGEWAIGNIFFNQGTTAPGEGLIDNSALGAVSFSFPHDQWFEFSVNVDI
                     SLGMSLATIQIVVDGVEVIPAGTAFTDSAGTVPTSLGGLNYYSISGNNEYYLDDIVFS
                     DTIVGTQDFAATGFQAYPNPVNNVLNLQANEAISNVAIFNVLGQEVYRANINAMTSQV
                     DMSQMASGAYFVKVNIGGTEGTVKVIK"
     gene            complement(6166..6756)
                     /locus_tag="DHV98_08780"
     CDS             complement(6166..6756)
                     /locus_tag="DHV98_08780"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06420.1"
                     /translation="MKNIFKIFILGVTLSFTACSESDALINQVLDSVDTESGAVLRTL
                     VDFPDLVTATNPANNVINSSIEVQQGDGSFVPDFKEVNVYVQVFNDQDLNEPLLTPDG
                     VDLGEQYWTTFDASQFEISSNGLPRSDISLVVQDVLDLYAASGTTPGTPSFMAIRFEI
                     VMNDGRTFSNDDVGVTISGGIYFNSPFFFKVIFLPI"
     gene            complement(6770..8410)
                     /locus_tag="DHV98_08785"
     CDS             complement(6770..8410)
                     /locus_tag="DHV98_08785"
                     /inference="COORDINATES: protein motif:HMM:PF12771.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusD/RagB family nutrient-binding outer membrane
                     lipoprotein"
                     /protein_id="HCK06421.1"
                     /translation="MKNISKLFTYVLLAAGLVFTSCETTDLDLLDDPNNVTQDKASLD
                     RFMTSIQLDFSSFMRQMGSNGAALTRINYMFGRTYVNNYQPVALDGEWSIAYRGMFSD
                     MAAAEILANDAGNNKHLGIMRILKAYTLITLVDAFGDVPYSQATNPSAFPAPMVDPGE
                     EVYAAALDMLNEGIDLLGQPGDNLEYDFFYNNEFGKWVKLANTVKMVAYLNTGNTSAF
                     NGIVNSGNFINATADDFQFQYGTNETNPDTRHPEYNGNYNVTGTGPYRSVWLMGTMLD
                     LGDPRMRYYFYRQSDCCPGASCNPGGNQTTLTCSVAPRPNHFPSDMVFCSLEEGYWGR
                     DHGNAEGIPPDSFQKTSSGVYPIGGSFDDDRFTSVSVGAGAGGAGIVPIMLASWTEFM
                     KAEVALAAGSAGAASTALSAGINKHINKVLEFGSLDPDADSAFFASASDVSSYVSSVV
                     NTFNSGSNEQKWEVLATQQFIAHYGNGMDSYNFYRRTGYPKKLQLNIDPNPGAFVRSF
                     FYPANEANVNSNIVQKPGVDLQVFWDTNPPSPGFPVAN"
     gene            complement(8429..11665)
                     /locus_tag="DHV98_08790"
     CDS             complement(8429..11665)
                     /locus_tag="DHV98_08790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HCK06422.1"
                     /translation="MRTKFSGFLTLLLAFVVQLTFAQQKTVSGTVLDETNLPLPGVNV
                     IAKGTTNGVQTDFDGNYTIEVNVGETLVFSYVGYKNVEMPVTATSSDMSFSMELDASV
                     LNEVVVIGFAVKKDKKALGYSVSSIQQESIKESPQTDLTRVLAGKAAGINITTQNGMS
                     GSANKVIIRGTNSFTGDNNALYVIDGVPISNDTNEAGNFVDGNMGSSRSFDIDPNNIE
                     RVDILKGLAATTLYGTQGRNGVILITTKSGSGAEQNAKQEIEVSSSLFVNEVSILPDY
                     QNKYGGGFDQAFGWFYSNWGPGFYRDGLGGWGADPSFDANGTVAHPYSTSNFLATNYP
                     DYQAQFAGERYDWRPRNSVNEFFRKGLARNISVNARGRSKDGKFGYGTVFSNLDEDGF
                     TPGNNVKRSNLTLSGDAKLSNKFSIRGSMTYTKTDLKTPPVAASFGSSTFGSGSSIFG
                     DLFYTPRSVDFYELPFELPDGASIYYRQDNAIQHPLWTIKNARFSQLVNRVNGFANIA
                     YDISDKFNVFYQASIDNYTENAVNRQNRGGVTGDINTDRGFYQTTSTTNTIYDHRVVL
                     SGNNFSFLDDKANMSFTVGATSNSVDYNSFGLRSTDQQVFGFFDHSGYVERFQSEFHQ
                     RRNIVGVFGQVLLDYDNYLFLNLSGRNDWVSNSIENSLFYPSASVSFVPTSAIEGLSS
                     DNGIKYLKLRAGYGTSANFVTGYPTVTLVSLNTQAWNDGSDITSNTTTSSIGNRAIRP
                     ELFEEIEFGAEGNLFNRLTFDVSYFERTTNDLIVEDQPIPTSTGASFIDNNIGEVQSK
                     GIEADLGFNLVKSATNGFDWKLNVNYTTFESEVISLGQDTEQVVYAGFTNLGNFATVG
                     DPLGAMYGSRVARDANGNLLVDAAGNYVAETTTEDGLVPLIGDANPDFVMNYISTMSY
                     KGLSLNLQFTHVSGGDIYSTYVASLLGRGLTTDTEDRLGTYILDGVNQDTGLPNTVQI
                     NNSDFYFTNGFASPADELSVYDASVVRLQEVSLGYTLGSKLLEKTPFGSVTFKFSGFN
                     LWYDAYNTPEGINFDPNTTGLGAGNGAGFEFLTGPSSKRYGFSVNATF"
     gene            complement(11904..13706)
                     /locus_tag="DHV98_08795"
     CDS             complement(11904..13706)
                     /locus_tag="DHV98_08795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06423.1"
                     /translation="MKNPILVTILLFSVLIPFKSTGQEIAVTFATESQSHSELLELPK
                     GVQSFLSRQALLAKVDEEIKRLQLKGYISTLASEREIADDQGLPVLEVIFNLGQQWQN
                     LVVAFPKSVEPYLKKSPWLKLLETAPNSLLQPHHGDSSTFLKKNHSLRKLKIPIDKVP
                     EFMNQLSQSLAQEYSPFSKIKFVNIEALEFPDISVTLDVLLIPQRTVDSLVVKGYPNV
                     DYGLLKHRGGLKLPLAFSEKTIQKAEENLSTSPYLSIQRPSEVLFEDKRTTLYMYLQK
                     KETNQLEGILGFGSDPENQSIQLNGYLNLQLWNNFNKSEQFNLNYKADGNQQERLEIS
                     ASLPYIRQSPFGIHTSFELFRRDSTFTTASTRGQITYKPLGPLEIALGYTSIKSTTGP
                     ASDGIQNNIADFQQGLWGLEAKIEQPKNSILMPTNYRLTLQYAYGSSEENSLSGSSTV
                     AMKNRFPRQRTSIELEYLWDLWVNHYFYIHHNSRWINGENLRINELHRFGGTQSLRGF
                     NENLLETAQLHLIQTEYRLAFSDAFYIHHLTDLAFYRDQIDEQMTTNYSLGLGIATMT
                     RAGLLKLQIAQGFGKRSDFSSNNTKIHLVFNSRF"
     gene            13902..14276
                     /locus_tag="DHV98_08800"
     CDS             13902..14276
                     /locus_tag="DHV98_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006795815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HCK06424.1"
                     /translation="MPTISQLVRKGRAKITKKSKSAALDSCPQRRGVCTRVYTTTPKK
                     PNSAMRKVARVRLTNGKEVNAYIGGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGAL
                     DTAGVQGRLQRRSKYGAKRPKK"
     gene            14297..14773
                     /locus_tag="DHV98_08805"
     CDS             14297..14773
                     /locus_tag="DHV98_08805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007803600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HCK06425.1"
                     /translation="MRKRQAKKRPLLPDPRFNDQLVTRFVNNLMWDGKKSVAFKVFYD
                     AIDIVESKNQDEEKSALQIWKDALSNVMPHVEVRSRRVGGATFQIPMQIRPDRKISTA
                     MKWLISYARKRNEKSMAQKLASEILAAAKEEGAAVKKRMDTHKMAEANKAFSHFRF"
     gene            14777..>14937
                     /locus_tag="DHV98_08810"
     CDS             14777..>14937
                     /locus_tag="DHV98_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06426.1"
                     /translation="MAKRDLKFTRNIGIAAHIDAGKTTTTERILFYTGVSHKIGEVHD
                     GAATMDWME"
BASE COUNT         4288 a         2962 c         3110 g         4338 t
ORIGIN      
        1 ggcgactttg gcttggtatg gtaatgccga ttatctgaat tacccattta aatttgatca
       61 catcagtgcg cgtgcagatc ttttaagtgt ttttcatttt ggcatcaata aaaaaattga
      121 tcgtaaatgg actgtaggag gacgtttaaa gctctataac agtattctcg cggggagtag
      181 tctcaataat cgcggcagtt ttaccacgcg gttgtccgat ggagacagtc aaaatattta
      241 tgctcaggat ctgaataagg caaacgtcag tattcagact tcgggattat ctcgatttga
      301 ggggaacgtt acctcttcag atttactcag tgcagggctt tttggcggag atttaggatt
      361 aggaatagat gtaggggcga cctatcaata tgacgacgcc tggcgattta gcggcagtat
      421 tttagatatt ggcgctatag tgcacgcctc agatgttaaa acttatcaag catcgggtga
      481 ttatatcctt gaggggattg aacttgattt tccggccctg tcacaaggtc aaaatgcacc
      541 tccgtactat gcgatttttg aaaatgagat tgaagccgct gtacctatag acacgttata
      601 ttctgcctat acccagtggc gtccggtaaa aatgaatttg gcggcctcct acggctttgg
      661 tccaacggca ccgggttcgg ttgcctgtaa ttgttcgggt aaaggcgatg cgtatcaact
      721 agaaagtgag gttggcgtgc aattttatgc catcaaaaga ccaaaagcaa ttcaaacggc
      781 gctgagccta ttttatgttc gccgtttgtt gcgtaattta acactcaaat caacttggac
      841 tatggatgcg ctctcttgga caaacctagg tttggttgcg gtaagtgatt tggggccaat
      901 taatgtttat cttgcagcgg atcatttact gacctattcg aatttggcca aggccagggg
      961 cgcatcaatt cagtttggaa tcaatgtaaa attagaacgt cgatgaggta tttaataatc
     1021 agtgttatat tttttttaat taccactgcg agtaatcgta ttgctgctca gcaggagcgt
     1081 ctaagcgctt ttgattatgt tgtcgtaccc gatcgttttg attttcagta cgagcgcgat
     1141 caataccaaa ttaactcatt acttaaattt ttatttaaca aacatggttt tcatgcattt
     1201 ttcccctctg aattgcctga tgtaagtcgc tgtgatggac tttacgcgga aattgagcag
     1261 gtcaatgggt ttgtgtggac tgaggtgagt ataagacttt tagattgcga tggaatttta
     1321 ttttatcaaa caaaaagtgg ccgcagtaaa cttaaggatt ttgccaaggc ctatagtgag
     1381 tctattcgca tggcttttga aagtatagaa attttagggg tacgtcaagg accactcgaa
     1441 atcttgcaaa aagggggaca ggacagtaat tctgaagaga ctatcgcgcc tgatgccaaa
     1501 gccaatccaa agtcaaacag cgatcgacca ttgggcagta attcttcaga gggcctacaa
     1561 accgaactaa agcccctcaa aaatgaagca gtgacgcttg gtttaattcc agatgtggcc
     1621 atgatgaact ttaagtcttt tgaaaaaact tatttattgc ggcggaccga tttagggtat
     1681 caatggtatc gtgaagacgg tcaagattta atttatgaag gcaagttttt tgttgtggaa
     1741 aagatgcttt tttatgaaga caaagaccaa atgcgctatt tagctgaatt tactccgcag
     1801 ggtgcactca ttttaaatcg ggaaggccaa agagtcgttt ttgaaaaggc caattagatc
     1861 gggtattttc ctgaccacat tttttgaaat tctgcaaagc tctgttgttc cttggtccgt
     1921 gcagagggtc tgtaaatacg gacttctttt aattcttcag gcagaaaatt ttgttgcaca
     1981 cagccattag gcgtgtcgtg atcgtattga tagtccgcac catagcctaa atctttagtg
     2041 attttgtttg ccggattgcg caagtgaatt ggcacaggaa gatgggccgt ttctttagcc
     2101 aggttcatgg ctttatttat ggcctgataa gcgctgttgc tttttgggct catggctaaa
     2161 taaagaatgc attggcccaa gacaattcga gcttctggta aaccgacggt ttgaatggct
     2221 tgatgagtag actgggccat aattaaggcc gtcggattgg ccaatccgat atcttcagcc
     2281 gctgaaatta tgagtcttcg cgcaataaaa ctcaatgatt cgcccccgat gagcattcgg
     2341 gaaagccaat aaagagctgc gttggggtca cttccgcgta tcgacttgat catggccgaa
     2401 gcaatgtcgt agtgctggtc gccgctttta tcatagcgca cccccaattg atcgaattga
     2461 gccttgacgt aagcgtcagt aatttcaata ctaaccgctt cgttgggcat taccagcagt
     2521 tcaaacnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnngcat taccagcagt tcaaacgtat tgagtaattt tcgcgcatcc ccaccacaac
     2701 tttgaataag gactttggtt tccattaggt gtactgtttt ccgttttagt tcggaatcag
     2761 tttggagggc gcgttggagc aatgataaca gatcttcctc atttagtgca tttagggtat
     2821 atacctgaca gcgcgacaaa agggcaggaa taacctcaaa acttggttgt tcagtagtgg
     2881 ctccaatgag ggtgacccaa cctttttcta cggctccgag taaggcgtct tgctgagatt
     2941 tactgaatcg atgaatctca tcgataaata agattggatt gctttgcaca aaaagccctg
     3001 agcgatcttt tgccttttgg atcacttctc tgactttagc cacaccacta tctatggcac
     3061 ttatattgta aatctcccgc ttcgtttctt tggccaataa accggcgagt gttgttttac
     3121 ccgttccggg cggtccccaa agaatcatgg aggcaattaa gccactatcc aattgaggcc
     3181 tcaaggcacc atggggccca attaaatgtt tctgaccgat atagtcaccc aaaataaccg
     3241 ggcgcattcg ttctgccaaa ggtatattca tgacttaaaa atacaatatt cactaaggat
     3301 tgctgtaaaa ttgacataat tttgatttag gctcattatt tgtctaatct cagtatgcgg
     3361 ctaaaaagaa acattcctnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnaaa cattcctttt aactggtcgg tcttgatcgt tcccattgct
     3541 tttgtattga gcctgtgggt tgtcttttgg gtagaaattc gatttggaat ccgttttaag
     3601 aattttggta ttttcccagg aaaagttgaa ggattatggg gaatattaac cgggccttgg
     3661 attcattctg ggttgagcca tttgagtaat aattctctgc ccatgctgtt tttactggcg
     3721 gcactatttt atttttacaa accaattgcc ctacgtgttt ttttgattgg tttaattctc
     3781 acagggttga ccacttggat catcggaaga ccttcgtggc atattggcgc gagtggatta
     3841 atttatatgc tcctggcctt tatttttttt aaaggaattc aatcgcgtat ttatccgctt
     3901 gttgcggtcg ctttaaccgt agtatttctt tatgggggat tattttggta cttattccca
     3961 ctcgacccca aaatatcttg ggaagggcat agtgcgggtt ttattatcgg tttattgtta
     4021 gccttatatt atcgcaaaca agagagtcat ttatacgaaa cttatatatg gcaaagtgag
     4081 gactttgatc ccaatcaaga tgcctttatg agacaatttg atgagcaagg ccagttcaat
     4141 ccggaagttc aggatgatga aaatcaatca actcaagagg cttgtggcgt taaagccgct
     4201 gacattaaaa accgtgccga tcgggaatca ataactgaag atgattccaa aattggcgat
     4261 aatgtcggga taaaagtgaa ttacacttat cgtagtaata ataaaaacta aaatgttctc
     4321 tgtcgtaaaa cttcgaataa aatcgctccg gcagccacag atacattgag agattttgtt
     4381 ttgcccacca taggtatcga aataaggcca tctaacaagc ctaatactga tttattaatg
     4441 cctttaccct ctgaacccaa tacgatggct acaggggctt tataatcaga attaaaatag
     4501 ttttcggtgg ctttttcact ggccccaaat actttgtaac ctgagccttg aaggtaaaaa
     4561 attgcgtctt tgacgtgatc gactttacat attgggacgt taaacacggc acctgctgaa
     4621 gtttttacgg tatcagcgtt tacaggagca ccaccggttt tttgaataat tattccgctt
     4681 acaccagtac attctgcagt tcttatgatc cccccaaaat tacgcgcatc ggtgagttgg
     4741 tctaaaacaa taaagagccc aggactttct ttttcttctt gggccgaaat aagttcttct
     4801 agagtaacaa aactaatagg ggagaggtag gcaacaatcc cttggtgatt agaacgggtg
     4861 agtttatcga gttttacaag cggtacaaga ttcacgggga tatctcgctc tgccgcaatt
     4921 ttgattattg actcaaagcg atgggagtcg cttccttgtt gaataaatat cttatcgagt
     4981 gtggcccctg cttctagggc ttcgagaacg gggtaatagc caaaaataaa atcgtctttt
     5041 ttcatatttc gaattatctc ccaaaattag aacaaaaaaa agaggctgtc gttagacagc
     5101 ctcttttaaa tcaaaagtaa atcaaattac ttgataactt ttacagtacc ttctgtacca
     5161 ccgatgttta cttttacaaa gtaagcacca cttgccattt gagacatatc aacttgagat
     5221 gtcatagcat tgatgttagc acggtatact tcttgtccaa gaacattgaa aatagcaacg
     5281 ttgctgatcg cttcgttagc ctgaagattc aatacattgt tcactgggtt tggatacgct
     5341 tggaatcctg tagcagcgaa gtcttgagtt ccaacgattg tgtcagagaa tacgatgtcg
     5401 tctaggtagt attcgttgtt tccactaata gagtagtagt tcaaaccacc taagcttgta
     5461 ggaacagttc cagctgagtc agtaaatgca gttccagcag gaataacttc aacaccatca
     5521 acaacaattt gaatcgttgc taatgacata cctaaagaaa tgtctacgtt aactgaaaac
     5581 tcaaaccact ggtcgtgagg gaaagaaaat gaaacagcac ctaatgcact gttgtcaatt
     5641 agaccttctc caggagcagt tgtgccttgg ttaaagaaaa tgtttccgat tgcccactca
     5701 ccgccaccaa ttggcacagt accttgaaca ttcatgtaac cttcttttcc tgaagggatg
     5761 tacatgtaag aagtgtagaa ccaagttccg aagattttgt tacctaaatc aagaactggg
     5821 tccattcctg aaccatcaac aaagaaagaa acagatccac tttgagcgta ggcgtcagat
     5881 gctaaaccag cacaagtacc accacaaccc cagtcagtcc accagttttc gtaaacggtt
     5941 tggcctggcg tgtagctttc catatcatca gcgaactgtg cagatacact agtcaacgcg
     6001 aatgcgaaaa gcgcagcaaa aaaataattt tttttcataa taactataaa tttaaagttt
     6061 aataaagtca aagttacaaa aaaatatttt agaaaaaagc caaattagca aaaagaaagg
     6121 gggcgaatag cccccttttt agttaagatt ttttcttttt ttagtttaaa tcggtaagaa
     6181 aataacttta aagaaaaatg gcgaattgaa ataaattcca cctgaaatgg taacaccgac
     6241 atcatcatta gagaatgtac gaccatcgtt cataacgatt tcgaaacgaa ttgccatgaa
     6301 gctaggtgtt cctggggttg ttccagatgc tgcgtacaaa tcgagtacat cttgaaccac
     6361 gaggctaata tctgagcgtg gtaaaccatt acttgagatt tcgaactggc tggcatcaaa
     6421 ggtcgtccag tattgttctc ctaggtcaac accgtctggt gttaacaagg gttcgttcag
     6481 atcttgatcg ttgaatactt gaacatagac gtttacctct ttgaaatcag gtacaaaact
     6541 tccgtcacct tgttgaactt caatgctcga attgattacg ttgtttgctg gattagttgc
     6601 cgtaactaaa tccgggaaat caactaaggt tctcaataca gctcctgact ctgtatctac
     6661 agaatcgaga acttgattga tcagtgcgtc ggattcacta caagccgtaa agcttagtgt
     6721 gactcctaaa atgaatattt taaaaatatt tttcatactt atcgattttt tagttagcaa
     6781 ctgggaatcc aggtgatgga ggattagtat cccagaatac ttgtaaatca acacctggtt
     6841 tttgtacaat attactgttt acgttagctt cgtttgcagg atagaagaaa gaacgtacaa
     6901 aggctcctgg attaggatca atgtttaatt gtaatttctt tggatatcct gtgcgacgat
     6961 agaaattgta agaatccata ccattgccat aatgagctat gaattgttgc gtagcaagaa
     7021 cttcccattt ctgctcgtta gaaccgctat tgaatgtgtt tacaacacta ctcacatagc
     7081 tgcttacatc agaggcagaa gcaaagaacg ctgaatcagc atctggatct aagctaccga
     7141 attcaagcac tttattgatg tgcttgttga ttccagcact caaggcagtt gaagcagcgc
     7201 cggcactacc agcagctaaa gcaacttccg ctttcatgaa ttcagtccag ctcgcaagca
     7261 tgattggcac gattccggca cctcccgcac cagcaccaac tgatacagaa gtgaaacgat
     7321 cgtcatcaaa actaccaccg attgggtaaa caccacttga agttttttgg aaactgtctg
     7381 gtggaatacc ttcggcatta ccatggtcac gaccccaata tccctcttct aatgaacaga
     7441 agaccatatc agatgggaag tggtttggac gtggcgccac agaacaggtc aatgttgttt
     7501 ggttaccacc tgggttacaa gaggcgccag gacaacagtc gctttggcga tagaaatagt
     7561 aacgcatacg tggatcacca agatctaaca tggttcccat taaccaaact gatcgatagg
     7621 gacccgtacc ggttacatta taattcccgt tgtattctgg gtgacgtgtg tcagggttag
     7681 tttcattggt tccgtattgg aattggaaat catctgctgt agcattaatg aaatttcctg
     7741 aattgacgat accattgaac gctgatgtat taccggtgtt tagataggcc accatcttaa
     7801 ctgtattggc taatttcacc cattttccga attcgttatt ataaaagaaa tcgtattcca
     7861 ggttatctcc aggctgacct agaagatcaa tcccttcatt tagcatgtca agagcagcgg
     7921 catatacttc ctctcctgga tctaccatag gagcagggaa ggccgatgga ttagtcgctt
     7981 ggctgtaagg aacgtcacca aatgcatcaa ctaaggtaat taacgtatac gcttttagaa
     8041 tacgcataat tcccaagtgc ttattatttc cagcatcgtt cgctagaatt tcagcagcag
     8101 ccatgtctga gaacatacca cggtaggcaa tactccattc cccatctaaa gcgacaggct
     8161 gatagttatt gacataagta cggccaaaca tgtaattaat acgcgttaag gctgctccat
     8221 tggaacccat ctgacgcatg aagctagaga aatccaattg gatagaggtc atgaagcgat
     8281 ctaaactcgc tttatcttgt gttacgttgt taggatcgtc taacagatct agatctgtgg
     8341 tttcgcatga ggtaaatacc aaaccagcag ctagaagaac gtaggtaaat aatttactta
     8401 tatttttcat tgttcgtgtt ttattaggtt aaaatgtagc attaacgcta aatccatatc
     8461 tcttgctact cggtccagtc aagaattcaa accctgctcc atttccagct ccaagacctg
     8521 ttgtgtttgg atcaaaattg atgccctcag gtgtgttgta agcgtcatac cataagttaa
     8581 atccgctaaa cttgaaggtt actgatccaa atggagtttt ctcaagtagt ttagacccta
     8641 gggtatatcc taaagatact tcttgtagac gcactacaga ggcatcgtat acagagagtt
     8701 catctgctgg acttgcaaaa ccgttagtga aatagaagtc agagttgttg atctgaactg
     8761 tgtttggtaa tccagtatct tggttaacac catctaatat ataggtaccc aaacgatctt
     8821 ctgtatcggt tgttaaacca cgacctaaaa gcgatgctac ataagtagag taaatatcac
     8881 caccagagac atgggtgaat tgaagattta agcttaaacc tttgtaagac attgtactga
     8941 tatagttcat tacaaagtca gggttagcat caccaattag tggaactaaa ccatcttctg
     9001 tggtggtttc agcgacgtaa tttcctgctg cgtcaactaa tagatttccg ttcgcatcac
     9061 gggcaacacg agaaccgtac atcgcaccta atggatctcc tacggtagca aagttaccta
     9121 ggttagtgaa accggcgtaa acgacttgtt cggtatcttg acctaaactg attacttcac
     9181 tttcgaaagt ggtgtaattc acattcaatt tccagtcaaa accatttgtt gcagatttta
     9241 ctaggttaaa tccaagatcc gcttcgatcc cttttgattg aacttctcca atgttattat
     9301 cgataaatga tgcaccagta ctggtaggaa tgggctgatc ttctacgatc aaatcattgg
     9361 ttgttctttc gaagtaagaa acgtcaaagg tcaaacgatt gaacaaatta ccttcagcac
     9421 caaactcaat ctcctcgaaa agctcagggc gaatggcacg gttaccgata ctacttgtcg
     9481 tcgtattgga ggtaatgtca gatccatcat tccaagcttg cgtattcaaa gaaacaagcg
     9541 ttactgttgg atatccagtc acgaagtttg cagaggttcc ataaccagca cgtagtttca
     9601 aatacttaat tccgttgtca gaagacaatc cttcgatagc actcgttggc acaaaggaca
     9661 cactcgctga gggatagaat aaagaatttt cgattgagtt agaaacccag tcattacgac
     9721 cagaaaggtt caagaacaaa tagttgtcat aatctaataa gacttgacca aataccccta
     9781 caatattacg tctttgatgg aactcgcttt ggaagcgctc cacataacct gagtgatcaa
     9841 agaaaccgaa aacttgttga tcggtacttc ttaaaccaaa gctattatag tctacgctgt
     9901 ttgaggttgc cccaacagta aagctcatat tcgctttgtc gtccaagaat gagaagttat
     9961 ttccagagag aacaacacga tggtcataaa tcgtgttagt agtggatgtt gtttgataga
    10021 acccacggtc cgtattaatg tctccagtaa caccacctcg gttttgacgg ttcacggcat
    10081 tttccgtgta gttgtcaata ctcgcttggt aaaacacatt gaatttatca gatatgtcat
    10141 aagcgatatt cgcaaaacca ttcacacgat taaccaattg gctaaaacgc gcatttttta
    10201 tggtccacaa tgggtgctga atcgcgttat cttgacggta gtaaatactg gctccatcag
    10261 gaagttcaaa tggcaattcg tagaagtcaa cacttcttgg cgtgtaaaac aaatctccaa
    10321 aaattgacga acctgaacca aatgtacttg atccgaaact cgctgctact ggaggagttt
    10381 tcaaatcagt tttagtataa gtcatagatc cacggatgct aaatttgtta cttaatttag
    10441 cgtctccaga gagcgttagg ttcgaacgtt ttacgttgtt acccggtgtg aatccatctt
    10501 cgtcaagatt actgaataca gttccataac cgaattttcc gtctttgctg cgtccacgcg
    10561 catttactga aatgtttcgg gcaagtccct tgcggaagaa ttcgtttacg ctgttgcgtg
    10621 gtctccagtc ataacgctca ccagcaaatt gtgcctgata gtcagggtag tttgtagcaa
    10681 ggaaattcga cgtagaataa gggtgagcta ccgtaccatt tgcatcaaat gatgggtcag
    10741 cgccccaacc acctaggcca tctctgtaga atccaggacc ccagttactg taaaaccatc
    10801 cgaaggcttg gtcgaaacca cctccgtatt tgttttggta gtctggaaga atagaaactt
    10861 cattaacgaa caaagaagag gatacttcaa tttcttgttt ggcgttttgt tcagcaccac
    10921 taccactttt agtagtaatg aggataactc catttcgacc ttgcgtacca tagagtgtag
    10981 tcgctgcaag acctttcaag atatccacac gctcgatatt gttcgggtcg atatcaaaag
    11041 atcggcttga ccccatgtta ccgtccacga agttaccagc ctcgttggta tcattactga
    11101 ttggcacacc atcgattaca taaagcgcgt tgttgtctcc tgtaaatgag tttgttcctc
    11161 gaatgataac tttgtttgct gatccagaca taccgttttg ggttgtaata ttaatccctg
    11221 cagccttacc agcaagtaca cgggttaaat cagtctgtgg gctttcttta atcgattcct
    11281 gctgaattga ggaaaccgaa taacccaatg cctttttgtc tttcttaacg gcaaaaccaa
    11341 taacaaccac ctcgtttaag accgatgcat caagttccat tgaaaaagac atgtctgatg
    11401 acgttgccgt cacaggcatt tcaacatttt tgtaaccaac gtaactaaaa acaagagttt
    11461 ctccaacatt gacttcgatc gtatagttac catcgaaatc tgtttgaacc ccatttgtag
    11521 ttcctttggc aataacattg actccaggaa gcggcaggtt ggtctcatcc aacaccgtac
    11581 cggagactgt tttttgttgt gcgaacgtga gttgcactac aaacgctagt aaaagcgtta
    11641 aaaatccact aaactttgtt ctcattttgt aatttatttg aattagccaa cgccaaaaat
    11701 cacaataaaa agttaaatac acaacttttt aaacttaaaa tttcgaatta ttttaacaga
    11761 aagttacgct attgttaagg tttggcgaga ttgtatcttc tcaagaaatt acaaatttta
    11821 gccccaaatt ccctctaaaa acgccttaaa aacgagctga aaattcgtca aaaagttggt
    11881 caaaatttaa gacaatggaa ccgctaaaat cggctgttaa ataccaagtg aattttcgtg
    11941 ttattagacg aaaaatctga tcgtttgcca aaaccttgtg cgatttgaag tttgagcaag
    12001 cccgctctcg tcattgtggc gataccaagg cctaaagaat aatttgttgt catttgttca
    12061 tcgatttgat ctctgtaaaa ggccaaatca gtgaggtgat gaatataaaa tgcatcggaa
    12121 aaagccaaac gatattcggt ctggatgaga tgcagttgcg cggtttccaa gagattttcg
    12181 ttgaatcctc tcaggctttg cgttccgcca aagcgatgta attcattgat ccgaagattt
    12241 tcgccattaa tccaacgaga attatgatgg atgtaaaaat aatggttgac ccataaatcc
    12301 cataagtact ccagttctat gctcgttctt tgcctgggaa acctattctt catcgcaacc
    12361 gtgctgctcc ccgataagct attttcctca cttgaaccat acgcatattg gagtgttaag
    12421 cggtaattcg tgggcatcaa tattgaattt tttggttgtt caatcttggc ttcaaggccc
    12481 cataaacctt gttgaaaatc agctatatta ttttgaatac cgtccgacgc agggcccgtg
    12541 gttgatttta ttgacgtata acccaaagca atttccaatg ggccaagggg tttgtaggta
    12601 atctggcctc gtgttgaggc ggtggtaaat gtcgaatccc gacgaaataa ctcaaaggag
    12661 gtatgaatcc caaaaggaga ctgccttata taaggaagac tggcactaat ttcaaggcgc
    12721 tcttgttggt ttccatcggc cttatagttc aaattgaact gttcactttt attaaaatta
    12781 ttccagagtt gaaggttaag gtatccattt aattgtatcg attgattttc gggatcagaa
    12841 ccaaacccca aaattccttc tagttgattg gtttcctttt tttgtaagta catatataat
    12901 gtagttctct tgtcttcaaa gagcacttca ctcgggcgct gaatactgag gtaaggtgag
    12961 gtcgagaggt tctcttcggc tttttgtatt gttttctcgc taaaggctag cggtaatttt
    13021 agcccgccgc gatgttttaa aagcccgtaa tcaacattgg ggtagccttt tacaacgagg
    13081 ctgtcaacag tgcgttgggg tattaataat acatcgagtg tcaccgatat atcaggaaat
    13141 tcaagtgctt ctatgttgac aaacttaatt ttagaaaaag gactgtattc ttgagccaat
    13201 gattggctga gttgattcat gaactcaggc actttgtcta tgggaatttt tagtttcctc
    13261 agggaatggt ttttctttaa aaatgtgctg ctgtctccat gatgcggttg aagaagagaa
    13321 ttaggagcgg tttcaagcag tttcagccaa ggactctttt ttaggtaggg ttcgactgat
    13381 tttggaaaag cgacaaccag gttctgccat tgttgcccca aattaaatat gacctctaaa
    13441 acgggtaggc cttgatcgtc ggcaatttct cgttcactgg ccaatgtgct gatatatcct
    13501 ttgagctgaa gccttttaat ttcctcatcg actttggcca aaagtgcctg acgacttaaa
    13561 aagctttgaa cacccttggg aagctctaat agctccgaat gactctgtga ttcggtcgcg
    13621 aatgttacag cgatttcttg ccctgtgctt ttaaagggaa tcaaaacact aaatagaaga
    13681 atggtgacaa gaatagggtt tttcatagac acaacgaatc ctgacagaaa atcatacaaa
    13741 cttaacgctc gagacacaat attcttatgg cagtggaggt aaattcgaag ggcgacaaat
    13801 aatttgccta ggccattggg ataattcaat tttatttcta cctttgccgc cctttacagg
    13861 gagaaattat atcgtttatc taagtataat aaggatttta tatgccaact atttcacaat
    13921 tagtacgaaa aggaagagcc aaaataacca agaagagtaa atcggctgct ttagattcgt
    13981 gcccgcaacg ccgcggagtg tgtacgcgtg tatatacgac cacaccgaaa aaaccgaact
    14041 cagccatgcg taaagtggcc cgtgttcgtt tgactaacgg taaggaagta aacgcataca
    14101 tcggtggtga aggacacaat ctacaggagc actcgatagt attggttaga ggcggaaggg
    14161 tcaaagattt gccgggagta cgttaccaca ttgtgcgtgg ggcattggat accgcagggg
    14221 tccaaggtcg tttacagcgc aggtcaaagt acggagcaaa gcgccctaag aagtaattaa
    14281 actttaagaa gaagacatga gaaaaagaca agcgaaaaaa agaccgctgt tgccagatcc
    14341 aagatttaat gatcaattgg taaccaggtt tgtcaataac ttgatgtggg atggtaagaa
    14401 atccgtcgct ttcaaagtat tctacgatgc tattgatatc gtagagagta aaaatcaaga
    14461 cgaagaaaag tcagctttac aaatttggaa agatgcctta tcaaatgtga tgccgcatgt
    14521 tgaggttcgt tctcgccgtg tcggtggtgc gacattccag attccgatgc aaattcgtcc
    14581 tgaccgcaag atttctacag ccatgaaatg gttgattagc tatgcgcgta agcgaaacga
    14641 aaaatctatg gcgcaaaaat tggcgtctga gattttagct gctgcaaaag aagaaggtgc
    14701 tgctgttaaa aaacgtatgg acacccacaa gatggccgaa gcgaataaag cattttcaca
    14761 ttttagattc taggtcatgg cgaagagaga tttaaaattc acaagaaata ttggtattgc
    14821 tgcgcacatt gatgccggta aaaccaccac tacagagcgt atcctttttt acactggggt
    14881 gagtcataaa attggtgagg ttcacgatgg tgcagccact atggactgga tggagca
//
LOCUS       DPUP01000229           14116 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7781,
            whole genome shotgun sequence.
ACCESSION   DPUP01000229 DPUP01000000
VERSION     DPUP01000229.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14116)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14116)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14116
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..791)
                     /locus_tag="DHV98_08815"
     CDS             complement(<1..791)
                     /locus_tag="DHV98_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001296031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HCK06427.1"
                     /translation="MNATKKVAFYTLGCKLNFSETSTIARDLTGEGFDRVPFENFADI
                     YVINTCSVTENADQRFKTIVKKALKNNPKAFLIAIGCYAQLRPEELAQVDGVDLVLGA
                     SEKFNISAYLNELLNDANTRSEQAQIHSCAIEDVDTYVSSYAIGDRTRAFLKVQDGCD
                     YKCSYCTIPMARGISRSDKLENVLKQAQEIAQSGIKEIVLTGVNIGDYGKGEFGNKKH
                     EHTFLDLIRALNTVEGVDRVRISSIEPNLLSPEIIDFVAQSDNFVP"
     gene            927..2602
                     /locus_tag="DHV98_08820"
                     /pseudo
     CDS             927..2602
                     /locus_tag="DHV98_08820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080816.1"
                     /note="frameshifted; too many ambiguous residues; internal
                     stop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     assembly_gap    1568..1630
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2599..3774)
                     /locus_tag="DHV98_08825"
     CDS             complement(2599..3774)
                     /locus_tag="DHV98_08825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007094319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HCK06428.1"
                     /translation="MNLVFFDPAQSSGLLPLTYTRPVAELSIGGLTISQKWNKRLNTE
                     GSWLTKEYLQPIYPFRFTTDNTFINGAVLPNDVLVSEVTQLALGHGLRDKNGTIAWRS
                     GQWSSDLMPQEIIWHEFESEVTRILNSYDIFTVNAQEIQADFDLLTRSAISAPIPSWV
                     QCNDSSKVFVADHAQLEHCTLNTSQGPIYIGSGAQIMDGALLRGPLFIGDNAVIKMGA
                     KIYGGTTIGPYCKAGGEISNSVMMGYSNKGHDGFLGNSVLGFWCNLGADTNTSNLKNN
                     YDEVRLWDYARERFVHTGLQFCGLIMGDHSKCAINTAFNTGTVVGVSANVFGAGFPKN
                     FIPSFSWGGAGSMTTYSLNKAVETAKRVTQRRGIEWTAQDQGVFEAIFEASKSWRRD"
     gene            complement(3910..4161)
                     /locus_tag="DHV98_08830"
     CDS             complement(3910..4161)
                     /locus_tag="DHV98_08830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015482265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HCK06429.1"
                     /translation="MKKGIHPENYRLVAFKDMSNEDVFLTKSTADTKETLEVDGVEYP
                     LVKLEISRSSHPYYTGKHKLVDTAGRIDKFKNKYSKFKK"
     gene            4335..4874
                     /locus_tag="DHV98_08835"
     CDS             4335..4874
                     /locus_tag="DHV98_08835"
                     /inference="COORDINATES: protein motif:HMM:PF13858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4199 domain-containing protein"
                     /protein_id="HCK06430.1"
                     /translation="MSQALNPKKNAINHGVILGLMLALSTTIMYAFDTELFTKWWVGI
                     LSLLLVIVMGIISTAKSKGILGGFMSFKEAFSSYFITCAVGLAISTLVGILIFTIVDP
                     DLAQYLNERSMELAQEYMVKFGAPQAEIDKAMAELATKDNFSIVNQAKSYASLLIFHA
                     VIGLLIGLIFKKKDPAAID"
     gene            4910..>5657
                     /locus_tag="DHV98_08840"
     CDS             4910..>5657
                     /locus_tag="DHV98_08840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006261824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCK06431.1"
                     /translation="MELSIVIPLLNEAESLSELHQWITKSLDGVIKDYELIFIDDGSQ
                     DNSWEVINQLASQDKRVKGLRFLKNFGKSQALHAGFARAQGQYVVTMDADLQDNPEEI
                     PYLIDMLRSQGYDMVSGWKKKRYDSYFGKNLPSKLFNFAARKTSGVALNDFNCGLKAY
                     KAEVVQAIEVTGEMHRYIPVLASNAGFKRIGERVVQHQARKFGHTKFGSERFLRGFLD
                     LITISFISRFGKRPMHLFGAWGALMLTLGVL"
     assembly_gap    5658..5746
                     /estimated_length=89
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5747..5907
                     /locus_tag="DHV98_08845"
     CDS             <5747..5907
                     /locus_tag="DHV98_08845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014783143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HCK06432.1"
                     /translation="GRLITERPQFYIALTAMILGGQFFIAGFLGELILRSKQSTPNYR
                     IKESLNLE"
     gene            5963..>6988
                     /locus_tag="DHV98_08850"
     CDS             5963..>6988
                     /locus_tag="DHV98_08850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008464813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucomutase"
                     /protein_id="HCK06433.1"
                     /translation="MNLDPLLSKAQNWLKPHFDQNTQSAIQKLIDGPKDALEDAFYTS
                     LAFGTGGMRGIMGVGDNRINKYTLGKATQGLSNYLKTEFAAEFAEESLRVVIAYDCRH
                     NSDTLAQTVAEVFSANGIHVKLFSSLRPTPELSFAVRYLNCHCGIVLTASHNPPEYNG
                     YKVYWQDGGQLVPPQDSAIITEINTLDYQDIRFNPNHDLIERIDDEVDNAFIQASLNA
                     VPKRATNQNRKDLRVVFTPLHGTSVTMVPPVLAAAGFDQVHIVKEQATPDGNFPTVSS
                     PNPEEPQALQMAMDQAREFDADLVIGTDPDCDRLGIAVRNNHGELTLLNGNQAMVIKT
                     HFLLDGLT"
     assembly_gap    6989..7079
                     /estimated_length=91
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <7080..>7705
                     /locus_tag="DHV98_08855"
     CDS             <7080..>7705
                     /locus_tag="DHV98_08855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010522286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoglucomutase"
                     /protein_id="HCK06434.1"
                     /translation="DQKNKKSFIASTVVSTPMMRLLADDFGVAYKEGLTGFKWIAKMV
                     KDFPQQDFIGGGEESFGYMVGDFVRDKDAVTASLLICEIAAYLNGKGSSVWNYLQEIY
                     QRYGYFGEALISQVKKGRQGAEQIKAIMTAFRQEPPKTIAGSPVIKIEDYQNQKVLDL
                     TSGQETPLDLPASNVLIFYTQDGAKIAARPSGTEPKIKYYISVTAEAE"
     assembly_gap    7706..7820
                     /estimated_length=115
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7872..>9489
                     /locus_tag="DHV98_08860"
     CDS             7872..>9489
                     /locus_tag="DHV98_08860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015025445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic ABC transporter ATP-binding protein"
                     /protein_id="HCK06435.1"
                     /translation="MKYFRSIIHFAKPYMGYAWLNIIANVFYALFGTLAFVSLMPMLK
                     VLFQNATKVSSRPEFQGLGNVGQYGEDLMNYYITQQIETQGELYALSWMIALVISTFL
                     LKNLFGYTAMYFITFLRNGVLKDLRNEVYRKTVALPIAYYSEKRKGDTIARISSDILE
                     IQHSFLSILELLVREPLMIVFTIVAMLLISAKLTLFVFIFIPLSGFAIAYIGKSLKQK
                     SGRVQKEQGIFLSIVEETLGGLKIIKGFNAQGQFQERFESSTRRFFRFSNKLMHRQSL
                     AVPISEFLGILVIAILLWFGGSMVLVEHSLAPEAFIVYMGLAYNILTPAKAISKASYS
                     VKKGNAAAERVLEVLTTESNIKEPENPIAKHDFNESIELCNIRFRYEKEWVLNALSIK
                     IAKGQTVALVGQSGSGKSTIANLLTRFYDVQEGSIKLDGQDIRDLRIKDLRGLMGLVT
                     QDSILFNDTVFGNMRVAKPDATEQEIFEALEVANAKEFVLALPEGLHTNIGDSGNKLS
                     GGQKQRLSIARAVLKNPPIMILDEATSALDT"
     assembly_gap    9490..9649
                     /estimated_length=160
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <9650..9879
                     /locus_tag="DHV98_08865"
     CDS             <9650..9879
                     /locus_tag="DHV98_08865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002986843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="antibiotic ABC transporter ATP-binding protein"
                     /protein_id="HCK06436.1"
                     /translation="TSALDTESERLVQDALDKMMKHRTSVVIAHRLSTIQKADLIVVM
                     SKGKIVEQGKHDELLQAKGIYHNLVKMQSFQ"
     gene            complement(10261..11277)
                     /locus_tag="DHV98_08870"
     CDS             complement(10261..11277)
                     /locus_tag="DHV98_08870"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HCK06437.1"
                     /translation="MLTFIITVSCDTPRYFEGVRVTPLLEDEISIRAVEVVHDKEVWF
                     AANKGRIGVYNGQEVSQIVLHHNDSLLHFRSIAHNGTHAFALTIDRPALLYRLSFDGH
                     QIVSADLVYTEDTPGVFYDAIDFWNPNEGIAVGDPTDGCLSVLITRDAGATWVKLPCH
                     QLPPSIEGEALFAASNGSIAVQGDQALIGTGGAAARVFKTTDKGKTWSVAQTPITQGS
                     AMQGIFSIASYDENTAVIYGGDWANPENNRDNKARSKDAGRSWQLLSPGAGPGYRSCV
                     RFVPGTHGRTLVAAGSKGISASYDRGKTWNQLSDISLYTLRFVNDSVAYAGGAGKFLR
                     LTFD"
     gene            11465..12676
                     /locus_tag="DHV98_08875"
     CDS             11465..12676
                     /locus_tag="DHV98_08875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017496129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HCK06438.1"
                     /translation="MRLHRNLVFATIDSLHSIFNEKKAADKVLRGTLKRDKRWGSRDR
                     SFIAETTYDIVRWKRLYQEIAEVKEPFDRDNLFRLFVVWGTLRGVTLPDWPQFEGKPT
                     RKIKGRFDALSKVRVIRESIPDWLDKVGLEAFGKEQWSAELKALNQQAEVVLRCNTLK
                     GTRKDLASSLAANSIETELAKQTPEGLVLKQRDNVFTTEEFQAGLFEVQDLNSQRVGH
                     WVKPKPGMRIIDACAGAGGKSLHMAALMENKGQIIALDIFPKKLEELKRRARRNGAHN
                     IETRLIESRKTIKKLYQKADAVLIDAPCTGIGVLKRNPDAKWKLTPEFLTEIIQVQKE
                     ILHDYSSMVKPGGSLVYATCSILPQENQQQIEAFLKSDEGQDFSLEAQESLLPSVTGY
                     DGFFMARLKRK"
     gene            complement(12800..13093)
                     /locus_tag="DHV98_08880"
     CDS             complement(12800..13093)
                     /locus_tag="DHV98_08880"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06439.1"
                     /translation="MGGLGSNDYVFSAAELLVRESDNDQFDIELRTQYQGPLYFALYN
                     VLGQQLKFKTLAQSGPDLYQIKLDMAQAASGVYIVKLSGPELKTYQSAKLIVR"
     gene            complement(13110..14099)
                     /locus_tag="DHV98_08885"
     CDS             complement(13110..14099)
                     /locus_tag="DHV98_08885"
                     /inference="COORDINATES: protein motif:HMM:PF07705.9"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06440.1"
                     /translation="MSNISQPENGLLTANETVEVAIRNFGLSAQSNFPVELYLDGNLV
                     ATETFTGTINSNEALPFTFAQTVDLSNAGQTYTLEAKTNLTGDEFAANDEYIKEVRHL
                     LASDVGVSEITAPSSGSGLGLETLTVTLENFGALTQANFDVTYTVNGGAPVTETYTGT
                     LDSQQSTNFSFTQQLDLTALGPYEITVSTALSGDQDPTNDSVSATVTNLLCQPNLNCS
                     FGDGFQLFAVNEINNPSGCEGYGDFTAQVANFDQDAIYDLTVTTGYGDQYVTVWIDFN
                     DDFNFTADEKVVNNYVMAPGQAGGSYTETMALTIPAGVNPXGECLRGNNIWRN"
BASE COUNT         3954 a         3037 c         2823 g         3782 t
ORIGIN      
        1 ggcacaaaat tgtctgattg agcgacaaaa tcaataatct cagggctcaa taaattaggc
       61 tcaatcgatg aaattcttac ccggtccaca ccctcaacgg tattcaaagc ccggattaaa
      121 tctaaaaaag tatgttcgtg ttttttattg ccaaactcgc cctttccata atcgccaata
      181 ttgactccgg tcaaaacaat ttctttgatc ccactttggg cgatctcttg ggcttgcttt
      241 aggacatttt ccagtttatc ggagcgggaa ataccacgcg ccatgggaat agtgcaataa
      301 gagcacttgt aatcgcatcc gtcttgtact tttaaaaagg ctcttgtgcg gtccccaatg
      361 gcataagaac tcacataagt gtcgacatcc tcaatagcac aagaatgaat ttgtgcctgt
      421 tcagatctcg tattggcatc attcaataat tcgttgagat aggccgaaat attgaacttt
      481 tctgaggcgc caagtaccaa atcaacgcca tctacctgcg ccaactcctc tggtcttaat
      541 tgagcataac acccaatggc aataagaaat gctttaggat tgtttttaag ggccttttta
      601 acgatggttt taaaacgttg atctgcattt tctgtaacgc tgcaggtatt gatcacatag
      661 atgtctgcaa aattttcgaa tgggacgcga tcgaaaccct ccccggtgag atcgcgggcg
      721 atggtcgagg tctcactaaa attgagttta cagcctaggg tgtaaaaagc gacttttttg
      781 gtagcgttca ttctcgtatt ttagcacaag tgcttgcaaa aatacgacat aataatcaaa
      841 atgaccccca ggcccctagc tacgggtttc ctattgaatt aagctggcct ttcgacaagg
      901 ctttgaatgc cctttgtcga ctttctttgc gtcttttatt gaccttaatc ctattttcct
      961 gcaatgcaga attcgagcag cgcgacccga acaccatatt tcggtataat gagtctggca
     1021 atatcagttc tctcgatcct gcttttgccc gaaatccgca aaacatttgg cccaccaacc
     1081 aattatttaa tgggcttgtt caactggacg actcactcaa tatcaagcct gatttggcca
     1141 aatattggac ctacaatgac agcagccgca cctacacgtt tatcttaagg gatcgtgtgt
     1201 acttccatga gcatgacctc tttggaccaa aacgcagcag gaccgtaacc gccgctgact
     1261 ttgtttatag ttttgaccga ctaaaagacg ataatttggc cgcgccaggc agctgggtct
     1321 tgcagcaggt agatcattac tgggcgtcaa acgatagcac actctcgatc aaactcaaac
     1381 aagccttccc cccttttctg ggcatactcg ccatgcgcta ttgttctgta gtgccccacg
     1441 aggccgtagc gtatttcggc aatgatttcc gcaaaaaccc catcggaaca ggaccctttg
     1501 ccttcaaact gtgggttgaa aacacaaata tggatcaaca acacaaccct tagatcggaa
     1561 gagcacannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn cctttgtatt ttgaacatga tgaaaaggga caacaattac cttatctcga
     1681 agcggtcgcc attagttttt tacccgataa acaaagtgaa tttttagaat ttacccaagg
     1741 caatctcgac ttcatctctg gtattgatca atcctataag gacgctcttt taaccccaca
     1801 aggcagtttg agtcccgact atgccaaaat agcctatatg ctcaaagccc cttttttaaa
     1861 cacagaatat gtcgggttta accttgagaa gcaggctgcg gccgtacaat ccaaactgat
     1921 tagacaagcc gtgaactacg gcattgatcg aaaaaaaatg atcacttatt tgcgcaatgg
     1981 catcgggttt tcggccgata aaggatttat tccaaaagga cttaaaggtt ccggaagcac
     2041 agcgatttat ccttatgata tgataaaagc caaaacattg gtcgattcct ttaaaagcct
     2101 taacccaggg ataagacctg agctgagctt gagcacaaac agccaatatt tggatctctg
     2161 tgaatacatg caaacggagc tggataaaat tgggatcact gtccatattg acgtgcttcc
     2221 tccttcgacg cttcgccaac taaaaaatac cggaggttta gagctattca gagccagctg
     2281 ggtggcggat tacccggatg cagaaaacta tctttctcta tttatcagtc aaaattttac
     2341 gccagacggg cccaattata cgcacttttt caaacccgaa attgacagcc tctaccaaaa
     2401 agcgttgacc gtacaacaag acagtcttcg ttgggcaatt tatcgcaaaa tggatgagaa
     2461 aatcatggaa ttcgcccctg ttgtgccttt gtattatgac atggccataa ggtttgttcg
     2521 aaaaaacgtg gaagatctag ggattaatgc ccaaaacttt ctttttttaa agcgtaccaa
     2581 aaagctcagt cctaaaaatt agtcccgccg ccaggatttt gaagcctcaa agattgcttc
     2641 aaatacgccc tgatcttgtg ccgtccactc aattcctctt cgttgggtca cgcgttttgc
     2701 ggtttccact gctttattca aactgtaggt ggtcatgctc cctgcaccac cccaactaaa
     2761 gctaggaata aaatttttgg gaaacccagc gccaaaaaca ttggcgctca caccgacgac
     2821 agtgcccgta ttaaaagcag tattgatagc gcatttgcta tgatcgccca taattaagcc
     2881 acaaaactgt aagccggtgt ggacaaaacg ctcacgggca taatcccaca agcgtacctc
     2941 atcgtagttg tttttcagat tagaggtgtt ggtatcggcg ccaagattac accaaaaacc
     3001 caagacagaa ttacccaaaa agccatcgtg ccctttgttg ctataaccca tcataacaga
     3061 attgcttatc tcccctcctg ccttacaata aggtccaata gtggtcccgc cataaatttt
     3121 agcccccatt tttatcaccg cgttatcccc gatgaataaa ggccctctta acaacgcacc
     3181 atccattatt tgcgctcctg agccgatata aatgggcccc tgtgaagtat taagcgtaca
     3241 gtgctcgagc tgcgcatgat cagccacaaa aaccttactt gaatcgttac attgaaccca
     3301 tgagggtata ggcgcggaaa tcgcagagcg cgtcaacagg tcaaaatcag cctgtatttc
     3361 ctgagcgtta actgtaaata tatcgtagct attcaggata cgcgttactt cagattcaaa
     3421 ctcatgccag ataatttcct gtggcattaa atctgaactc cattgccctg aacgccaagc
     3481 aatcgttcca tttttatcac gcaaaccatg gcctaaggcc aattgagtaa cctcagaaac
     3541 aaggacatca ttgggtagca ctgcgccgtt aataaaggta ttatcggtgg taaacctaaa
     3601 ggggtaaatc ggctgaagat attccttggt aagccatgaa ccctcagtgt ttaagcgttt
     3661 gttccatttc tgtgaaatcg tcaatccacc aatgctcagc tcggcaacag gtcttgtgta
     3721 ggtcagcggc agtaaacctg agctttgggc ggggtcaaaa aacaccaaat tcataaaaaa
     3781 aagatttagg gttaaagagt aatattaaca aacgcaggtc gatcaatcac aaagcagatc
     3841 gatcattcac aaatatagga ataaaaaaag ccttcgaaag aaggctttac tatgggagat
     3901 tcaaaattat tactttttga attttgagta tttgtttttg aatttgtcaa tacgaccagc
     3961 ggtatcaacc aatttgtgtt tcccagtata atacgggtgt gagctgcgag aaatctccaa
     4021 ctttactagt gggtattcga caccatcaac ttctagagtc tctttggtat cggcggtaga
     4081 ttttgttaaa aatacgtcct catttgacat atctttaaat gcaactagtc tgtaattttc
     4141 tggatgaatt ccctttttca tgttacttct tgtttgataa actctcacgg caaacaatag
     4201 ctttcgccgt ctaagcgggg gcaaatttaa tgataaattg caattcagca atagtttgag
     4261 cgattttttc tagaaaaaaa gccgtttcgt tttagtacat ttgtggtaca aaccaaacct
     4321 ttaaatttaa taaaatgtca caagcactca accctaagaa aaatgcaatc aatcacggtg
     4381 taattctggg cctcatgttg gccttgagca ccactattat gtatgccttt gatacggaac
     4441 tctttaccaa atggtgggta ggtatcttaa gcctactgct tgttatcgtc atgggcatta
     4501 tctccacggc caagtccaaa ggcatcctgg gtggattcat gagttttaaa gaagcctttt
     4561 catcgtattt cataacctgt gccgttggtt tagccataag tacgttagtc ggcatcctta
     4621 ttttcaccat agttgaccct gatttagcgc aatatctcaa tgagcgcagt atggaactgg
     4681 ctcaagaata catggttaaa ttcggtgcac cacaggcaga aattgacaaa gcgatggctg
     4741 aattagccac aaaagataat ttctcaatag tcaatcaggc aaaatcttac gcctctctgc
     4801 ttatttttca cgccgttatt ggtctattaa tcggtcttat ttttaagaaa aaagacccgg
     4861 cagcaatcga ttaaatgctt gtttgatttc tagcccgaac cattgaatca tggaactctc
     4921 aatagtcatc cctttactta acgaagctga atccctgagc gaattgcatc agtggatcac
     4981 caagtcgctt gatggggtga ttaaagatta tgaactgatc tttattgatg atggtagcca
     5041 ggataattcg tgggaggtta ttaaccagtt ggcttctcaa gataaacgcg tcaaaggcct
     5101 aagatttctc aaaaactttg gaaaatcaca ggcgttacat gcaggattcg caagagctca
     5161 agggcaatat gtagtcacca tggacgccga tctgcaagac aatcctgaag aaatccccta
     5221 cctgattgac atgttgcgct cccaagggta cgacatggtc tctggctgga agaaaaagcg
     5281 ttatgactct tacttcggta aaaacctgcc ctcaaaactc ttcaattttg ccgcccgaaa
     5341 aacctcaggg gtggccttaa atgactttaa ttgtggtctt aaggcctata aagcagaagt
     5401 cgttcaagcc attgaagtga cgggagaaat gcatcgttat attcccgtac tggcgagtaa
     5461 tgcaggattt aaacgtatcg gcgaacgcgt ggtccaacat caagcccgta aatttggcca
     5521 tactaaattt ggctctgaac gttttttgcg tggctttttg gacttgatca ccatatcctt
     5581 tatttctcgc tttggtaagc ggcccatgca cttatttggc gcctggggcg ccttgatgtt
     5641 gactcttggg gttttatnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncagg acggctcatt
     5761 actgagcggc cacaatttta cattgcgctt accgcaatga ttttaggagg acaatttttt
     5821 attgcaggat ttctgggaga actcattttg cggagtaaac aatcgacacc aaactatcgt
     5881 attaaagaat ccttaaacct cgagtaaatg gtgggatatt ccctattttt gctctgttta
     5941 tcgctatttt gaactcatgg cattgaattt agaccccctt ttatcaaagg ctcaaaactg
     6001 gttgaaacca cattttgatc aaaatactca gtccgctatt caaaaactca ttgatggccc
     6061 aaaggacgca ctagaagacg ccttctacac ctcattggcc tttgggacgg gaggaatgcg
     6121 tgggatcatg ggcgttgggg ataacagaat caataaatat actctaggta aagccaccca
     6181 aggactcagt aattatttga aaacagaatt tgccgcggaa tttgccgagg aatcacttcg
     6241 cgtggtgatc gcctatgatt gccggcataa cagcgacacc ttagcccaaa ccgttgctga
     6301 agtcttttca gccaatggaa tccatgttaa attattttca tcattacggc ccacaccaga
     6361 actttccttt gcggtacggt atttaaattg tcactgtggc atcgtactca cggcctcgca
     6421 caatccacca gagtacaatg gctataaggt atattggcaa gatggcggtc aacttgtgcc
     6481 gccacaagac agcgccatta tcactgaaat taatactttg gattatcagg acattcgttt
     6541 taatccaaat catgacctca ttgagcgtat tgatgatgag gtcgataatg cctttataca
     6601 ggcctcattg aacgcagtcc caaaacgcgc aacaaaccaa aatcgaaagg atttacgtgt
     6661 cgtttttacg ccacttcacg gaacctccgt aaccatggtt cctcctgtat tggccgcagc
     6721 gggttttgac caagtccata ttgtgaaaga acaagccacg ccagatggca actttcctac
     6781 ggtaagttcc cctaaccctg aagagcccca agcccttcaa atggccatgg atcaggctcg
     6841 tgaatttgat gcagacctgg tcattgggac agatcctgat tgtgaccgac tcgggattgc
     6901 cgtgcgcaat aatcatggtg agctgacctt actcaatggg aatcaagcca tggtgattaa
     6961 aacccatttt ttactcgatg gattaacgnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc
     7081 cgaccaaaaa aacaaaaaga gttttatcgc ctctactgtc gtatccacac cgatgatgcg
     7141 tttgcttgct gatgattttg gtgtcgctta caaagagggg cttacgggct ttaaatggat
     7201 tgccaaaatg gtcaaagatt ttccacagca agactttatc ggtggtggtg aggaaagttt
     7261 tggatacatg gtcggtgatt ttgttcggga taaagatgcg gtaactgcga gtttacttat
     7321 ttgtgagatt gccgcctatc tcaatggcaa gggttcctct gtttggaatt atcttcaaga
     7381 aatttatcag cgttatggtt attttggcga agcgcttatt tctcaggtca aaaaaggcag
     7441 acaaggtgcg gaacaaataa aggccatcat gacggccttt cgtcaagagc caccaaaaac
     7501 catcgcgggg agtcccgtta ttaaaataga agattatcaa aatcaaaagg tacttgattt
     7561 aaccagtggt caagaaaccc cgctcgatct acccgcctcc aatgtcctta ttttttatac
     7621 ccaagatggg gcgaaaatcg cagcgcgacc cagtggtaca gagccaaaaa taaaatatta
     7681 tatcagtgtt acggctgagg cagaannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn ggcattgtcc ccacagattg agtcgattaa aaaagaccta
     7861 aacctccttt aatgaaatac ttccgaagta ttattcactt tgccaaaccc tacatgggtt
     7921 atgcttggct caatataatc gccaacgtct tttatgcgct cttcgggacc ctagcctttg
     7981 tgtccttgat gcctatgctt aaagtgctct ttcaaaacgc gaccaaagta tcgagtaggc
     8041 cggagtttca gggcttaggg aatgttgggc agtatggtga ggacctaatg aattattaca
     8101 ttacccaaca aattgaaaca cagggagaac tctatgcctt atcatggatg atcgccttgg
     8161 ttatcagtac atttctgctg aaaaatttat ttggttacac agcaatgtat tttattacat
     8221 ttttgagaaa tggtgtttta aaagatttgc gtaatgaggt ctaccgtaaa actgttgcgc
     8281 ttcctatcgc ctattactcg gaaaaaagaa aaggagatac cattgctcgg atttcctcag
     8341 acatcttaga aattcagcat tcctttctat cgatattaga acttttggta agggagcctc
     8401 tgatgattgt attcaccatt gtggccatgc tcttaatcag tgcaaaactc accctttttg
     8461 tctttatttt tattccccta tctggatttg ccatagccta tatcggaaaa agtttaaaac
     8521 aaaaaagtgg gcgtgttcaa aaggaacagg gtatttttct ctccattgtc gaagaaacct
     8581 tgggcggctt aaaaattatc aaagggttta atgcccaagg acagttccaa gagcgatttg
     8641 agtccagcac acgacggttt tttagatttt caaacaaact catgcatcgc caaagtttgg
     8701 ccgtcccgat cagtgagttt ttaggaattt tagttatcgc tattttactg tggttcgggg
     8761 ggtccatggt tcttgttgag cacagcttag ccccagaggc ctttatcgtt tacatgggtc
     8821 tggcctacaa tattttaacg cctgccaaag ccataagtaa agccagttat agtgttaaga
     8881 aaggaaatgc agccgcggaa cgggtcttag aggttttaac tactgaatct aatatcaaag
     8941 aacctgaaaa tccaattgca aaacacgatt ttaacgagtc tattgaattg tgcaatattc
     9001 gctttcgcta cgaaaaagaa tgggtgctca atgcgctcag tattaagata gcaaaaggac
     9061 aaacggttgc tttggttggt caaagtggta gtggcaaaag taccatagcc aatttattga
     9121 cccgatttta tgacgtacaa gaaggttcga ttaaactcga tggccaagat attagggact
     9181 tgcgcatcaa agatttacgc ggacttatgg gactcgtcac acaagactct attctcttta
     9241 acgacacggt gtttggcaat atgcgcgtcg caaagcctga tgcaacagaa caagaaattt
     9301 ttgaagccct ggaagtagcc aacgccaaag agtttgtttt agcccttcca gaaggactcc
     9361 atacaaatat tggcgatagc ggtaataagc tcagtggggg acaaaaacaa cgactcagca
     9421 ttgccagagc cgtattaaag aatcctccga tcatgatttt ggatgaggct acctctgctc
     9481 tcgatacagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc tacctctgct
     9661 ctcgatacag aaagcgaacg gctcgttcaa gatgcgctcg acaaaatgat gaagcacaga
     9721 acttctgtag tcattgccca tagactctcg accattcaaa aggccgatct aattgtggtc
     9781 atgtcaaaag gtaaaattgt tgagcaaggt aagcacgatg aattactcca ggcaaaaggc
     9841 atctatcaca atctagtgaa gatgcagtct tttcaataaa aaaaagaagc gattggggct
     9901 tcgcttcttt ctgtttcttg aaccaccttg gggctagcga ttcaattaat tacacttcaa
     9961 agataagatt taattcatac gctccaaatt ttttgtgcat tttatcttaa aaaaatgcat
    10021 ttaatcgatg aagtaagcgt ttttatgtga tttaggcggt taataagggg ctatatgggt
    10081 caaatatcga ttcattcgga cataccgcca aaccaaaaaa gacgttaaac ctttaacgga
    10141 aaaccatgtc caaaggtttt actgtattag gcacattaag tatgcgtgaa tattctgaaa
    10201 gtgagtttgt cgcccagttg ctcaattcga gcactcggga ccaagcattt aaggagctga
    10261 tcaatcaaac gtcaggcgca gaaacttacc ggctccgccc gcgtaagcta ctgaatcgtt
    10321 tacaaaacgg agcgtataaa gcgaaatgtc cgacaattga ttccatgttt taccgcgatc
    10381 gtaactcgca gagattcctt ttgaacctgc cgctaccaaa gtgcgtccgt gagttccagg
    10441 aacaaatctt acgcatgaac gatatccagg acccgctccc ggactcaaca attgccaact
    10501 acgccctgcg tccttggagc gggctttgtt gtctctattg ttttctggat tggcccaatc
    10561 accaccgtaa attacagcgg tattctcatc ataactcgct atagagaata tcccttgcat
    10621 agcactcccc tgtgttattg gggtttgcgc cacagaccag gtttttcctt tatcggttgt
    10681 tttaaacact ctagccgcag ccccaccagt accgatcaag gcttgatctc cttgtactgc
    10741 aattgatcca ttgctggcgg caaacaatgc ctcaccttct atgctcggcg gaagctggtg
    10801 gcaaggtaat tttacccaag tcgcccccgc atctcgagta atgagtaccg acaggcatcc
    10861 atctgtaggg tccccaacag caataccctc attaggattc caaaaatcaa tggcatcgta
    10921 aaaaacccca ggggtatcct cagtataaac caaatcagcg ctgacaattt gatgcccatc
    10981 aaaactcaaa cgatacaata gggccggccg gtcaatggta agtgcgaacg catgggtgcc
    11041 gttatgagct attgatcgga aatgtaaaag actgtcattg tggtgcaaga caatttggga
    11101 cacctcctga ccattataca cgccaatacg ccctttattt gccgcaaacc aaacctcctt
    11161 atcatggacg acctccacag cacggatgct aatttcatct tctagtaaag gcgtaacacg
    11221 caccccctca aaatatcgag gagtgtcaca agagaccgtg atgatgaacg ttaacatcag
    11281 taaattaagc gttattgggt aagcgaattt tttcattcta gccgatttat attgatttaa
    11341 cctaagctaa ggtctgattt agatccggat actcatggcc tgaatcgtct gtaaaaaagg
    11401 attaaagtat aaagttaatt aatgaaataa agaatagtac ctttgacccc caataattca
    11461 atatatgcga ttgcatcgaa acttggtttt tgccaccata gatagtttac acagtatttt
    11521 taatgaaaaa aaggctgcgg acaaggtctt gcgcggtacg ttaaaaagag acaaacgttg
    11581 gggttcaaga gatcgcagtt ttatcgcaga gacgacatat gacattgtcc gatggaagcg
    11641 attatatcaa gaaattgccg aagtaaaaga accttttgat cgcgataact tgtttcggct
    11701 ttttgtcgtt tggggcaccc tgcggggcgt cacattacct gactggcctc aatttgaagg
    11761 caaaccaact cgaaaaatta aagggcgctt tgacgccctt tcaaaagtgc gtgtgatcag
    11821 ggaatcgatc ccggactggc tcgataaagt tgggcttgaa gcctttggca aagaacagtg
    11881 gtctgctgaa ttaaaggcat taaaccaaca agccgaggtt gtcttgcgct gtaatacact
    11941 taagggaacg cgcaaagatt tggccagttc tttagcggca aattcaatag aaactgaatt
    12001 ggccaaacaa acgccagaag gtttggtgct caaacaaaga gataatgtct ttaccaccga
    12061 agaattccaa gcaggacttt ttgaggtaca ggaccttaac tcgcaacgcg tggggcattg
    12121 ggtcaagcca aagccgggta tgcggatcat cgacgcctgt gctggtgcgg gcggaaagtc
    12181 actccatatg gcggccctaa tggaaaataa aggacagatt attgccctag atatttttcc
    12241 aaagaaactc gaagaactca aacgtcgggc ccgaagaaat ggggcacaca atattgaaac
    12301 ccgacttatt gaatcgcgta aaaccattaa aaagctatat caaaaggcag acgccgtgtt
    12361 gattgatgct ccttgtaccg gaattggtgt tttaaagcga aatccggatg ccaaatggaa
    12421 actcaccccg gaatttttga ccgaaataat acaggttcag aaggaaattt tacacgacta
    12481 ttcgtccatg gttaagcctg gtggtagctt agtttacgcc acctgttcca ttttacccca
    12541 agaaaatcaa cagcaaatag aggcgttcct aaaaagtgat gaaggacagg atttttctct
    12601 cgaagcccaa gaatctctac tcccgagcgt tacaggatac gatgggtttt ttatggcccg
    12661 attgaaaaga aaataaaaac agccccaaaa ttggggctgt ttttatttta atcgctctga
    12721 tttatgatca tattgatcat tatctccgga cataagacct tataatttat tcggtcactt
    12781 attaatcgta gacgttgggt tatctgacaa tcaacttagc cgattgatag gttttcagct
    12841 caggccctga caacttcacg atataaaccc ctgaagccgc ttgcgccata tctaatttga
    12901 tttgatacaa atctggacct gactgtgcca aggttttaaa tttcaactgt tgaccaagca
    12961 cgttgtacaa cgcaaagtat aatggacctt gatattgggt gcgcaattcg atatcaaact
    13021 gatcattatc tgattctcgg accaataatt ctgccgcaga aaagacgtag tcattactgc
    13081 ccagacctcc aatatttgcc gtatagtcct cagtttctcc atatgttgtt tcctcgcaag
    13141 cattctccgg nngggtttac tcctgcggga atggttaacg ccatggtttc tgtgtaagac
    13201 cccccagctt gaccaggtgc cattacataa ttattgacta ctttttcatc tgcagtgaag
    13261 ttaaagtcat cgttaaaatc aatccaaacg gtcacgtatt gatcgccata acccgtggtt
    13321 actgtaagat catagatcgc atcttgatca aagttagcca cttgagctgt aaaatctcca
    13381 tacccttcac aacccgaagg attattgatt tcattgacgg caaacaattg gaatccatca
    13441 ccaaaagagc aatttaagtt aggctgacaa agtaaattag tcaccgttgc gctcacgcta
    13501 tcatttgttg ggtcttgatc gccactaagc gcggttgaaa ctgttatttc atagggccct
    13561 aaggcggtta gatcgagttg ttgtgtaaag ctaaagtttg tgctttgctg actatccaaa
    13621 gtccctgtat aggtttccgt taccggagcg ccaccattga ccgtgtaggt cacgtcaaaa
    13681 ttggcttgcg tcaaagcccc aaaattctcc agagttaccg tcaaagtctc taagcctaaa
    13741 cctgatccag agctcggcgc tgtaatctcc gacacgccaa catcgctcgc caaaagatga
    13801 cgtacttctt taatgtattc atcattagcg gcaaactcgt ctcccgtaag attcgttttg
    13861 gcctctaaag tataagtctg cccggcattg gataaatcta cggtttgtgc aaaggtaaat
    13921 ggtaaagcct catttgaatt aatggttcct gtaaaagtct cggtcgctac taaattaccg
    13981 tcgagataga gttcgacagg aaaattactt tgcgcactca atccaaaatt tcggatagcc
    14041 acctcaaccg tttcattagc cgttaaaaga ccattttcgg gttgacttat attactcact
    14101 ccaatatcgg cgttaa
//
LOCUS       DPUP01000230           14471 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2357,
            whole genome shotgun sequence.
ACCESSION   DPUP01000230 DPUP01000000
VERSION     DPUP01000230.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14471)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14471)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14471
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..652)
                     /locus_tag="DHV98_08890"
     CDS             complement(<1..652)
                     /locus_tag="DHV98_08890"
                     /inference="COORDINATES: protein motif:HMM:PF00005.25"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HCK06441.1"
                     /translation="MAGSKILEVNIKHFAYQEEVILRDVNFSLDQGAHLAILGESGGG
                     KSTLLHLIFGLLPLPKGQIFWLGQEVPGPESLLIPGAPFMKLVDQEFTLMPMTTVAEN
                     IAADLPRFDLKASDQRVDELLEVVGLSAMKHTKARLLSGGQRQRIALAKALATEPQIL
                     LLDEPFSQIDLPRRADLRHRLFGYLKEKRITCLTATHDAYEALGYADQIAVLGRHTL"
     gene            complement(657..>2249)
                     /locus_tag="DHV98_08895"
     CDS             complement(657..>2249)
                     /locus_tag="DHV98_08895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HCK06442.1"
                     /translation="DTIVDVKFSGVSWYKNEGFYYSSYDKPKGSELSEKTDRHKLYYH
                     QLGTVQSQDQLIFGGDPDEKYRYVGGGVTDDQRYLVVSASNATSGNKLYIMDFERPEL
                     GFITIVGHSDSDTSVIDTDGTTLYLSTNLDAPNKRVVRTDLSAPTSEHWKDIIPEKEH
                     VLSINTAGGYLFAEYMVDAISQVFQYDYNGNEIRQINLPGPGSAGGFGAEKDETELFY
                     SFTNYTTPGSVYKMDITSGASELFITPAIDFNSEDYTSEQVFYTSKDGTKVPMIITYK
                     KGLKRDGKNPTILYGYGGFNISLTPSFSIVNAVWLEQGGIYAVPNIRGGGEYGKNWHK
                     AGTQMQKQNVFDDFIAAAEYLIENDYTSSDYLAVRGGSNGGLLVGAVMTQRPDLMRVA
                     LPAVGVLDMLRYHTFTAGAGWGYDYGTAQDSAEMFNYLLGYSPVHNVKPGVAYPATLV
                     TTGDHDDRVVPAHSFKFAAELQAKQSGDAPVLIRIETDAGHGAGTPVSKTIEQYSDIF
                     GFTLFHMGYRVLPEDVGERLKT"
     assembly_gap    2250..2397
                     /estimated_length=148
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2398..3016)
                     /locus_tag="DHV98_08900"
     CDS             complement(<2398..3016)
                     /locus_tag="DHV98_08900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HCK06443.1"
                     /translation="MKNLILLSVIIITMSCNQTQKPEFSPLSYPETKKIDTVDQYFDT
                     PVADPYRWLEDDRSEETGAWVAEQNKVTFGHLNEIPFREALKSRLTQLWNYEKVTAPF
                     KEGDYTYFYKNNGLQNQYVLYRYKTGGSAEDAEVFLDPNTFKEDGTISLGGVSFSKNG
                     GYAAYSISEGGSDWRKVLVMDTQSQTLVGDTLMDVKFSGLSWRGNE"
     gene            complement(3168..4769)
                     /locus_tag="DHV98_08905"
     CDS             complement(3168..4769)
                     /locus_tag="DHV98_08905"
                     /inference="COORDINATES: protein
                     motif:HMM:PF07593.10,HMM:PF13517.4,HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HCK06444.1"
                     /translation="MKSLFTLATLIACTATAFGQISFTPEFIDTNRSDRAVVDMNGDF
                     LDDIVSVATSSIQIFYQQADGSFIEEILFTSPADNLPSWSLAAADYDGNGYTDLLYGG
                     GNGVTIMRANNSGDGFQEISFPQYVFSQRSNFVDINNDGHLDAFVCHDVEPNVYYIND
                     GQGNLTYFQGGIGDYPSGGHYGSVWIDYDNDGDIDMFNAKCGGEPARREDELHQNDGF
                     GNFTEIAATAGLLDPMQTWSSAWADYDNDGDMDVFVGNSTDPFAHKLMTNNGDGTFTD
                     ISATSGVQDLATTGIENCAYDFDNDGFVDIASNGNIFLNNGDLTFTLYNNVLPSNNGS
                     FGDLNYDGFIDSFTGSTIHMNNPNDNHYLTINTVGVESNRNGIGARITVVSDLGSQIR
                     EVRSGEGFRLMSTLNTHFGLGQDTEIATITVQWPSGIVDTLENVAVDQTIVIVEGSTI
                     LGISDQDPLSLVLSPNPVRDMLMISGAQSVEGAQYDVFDMQGKVVTQGVLTNGSINLG
                     ALAQGNYVLRLTQAGSVRSQKFIKK"
     gene            complement(4791..6197)
                     /locus_tag="DHV98_08910"
     CDS             complement(4791..6197)
                     /locus_tag="DHV98_08910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06445.1"
                     /translation="MPTLEDIQGMRAKNMIRFPLLTLIALLGLWSCSDDDNGYTPLNI
                     NALGDQAEVFQNAVLTLDILENDTNVPIDGQILLDAPSKGTASITAHNNLGEARLTYT
                     PNPGALGEDSFIYSVCDGLGNQCSNALITINILPVTPVSLDLSLVPYPKLSDYNFFEG
                     SMAQQEPAFGVLPYEPISTLFTDYAHKKRFVWMPEGSSAAYMSDDVLLNFPTGAVLIK
                     TFYYDNVLPDLTTQIIETRLLIKKEEGWLFADYIWDAEQQEAMLDVEGYGANVPIEWV
                     ENGQTNFVNYRIPSNSQCYTCHKAYQDETPIGPKPQNLNGLFDYTEGAQNQLQKWADV
                     GYLDPGFPSQINTVVDWSDETLDLETRVRSYFDINCASCHSDSGHCDYRALRMTFSSS
                     ADLANLGVCVDPDTPIPGYENAKIIEPGNAQGSVLFFRLHTTDEEYRMPLLGRSLRHD
                     ESLEFIEQWIQNLTTVCD"
     gene            complement(6298..7287)
                     /locus_tag="DHV98_08915"
     CDS             complement(6298..7287)
                     /locus_tag="DHV98_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010519543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HCK06446.1"
                     /translation="MRVAVVGVTGMVGQIMLDSLASRSFPVSQLIPVASAASIGKKVV
                     FQGQPHTIIGLQEALDQKPELALFSAGGDVSRDWAPRFAEIGCTVIDNSSFWRMHPEI
                     KLVVPEINAAILTAEDKIIANPNCSTIQLVMVMAPLHKKYGINRVLVSTYQSVSGTGQ
                     KAVQQLNDEISGINGPKAYPHPIHKNALPHCDVFLDNGYTKEEMKLATEPQKIMGDSS
                     FKISATAVRIPTEGGHSESVNLTFNRDFDLSEVRHILDNTPGVILEDEPVNNRYPMPV
                     SAHGKDEVFVGRLRRDLSASNSLNLWIVADNLRKGAATNAVQIAEYLCANHLI"
     gene            complement(7292..7702)
                     /gene="mscL"
                     /locus_tag="DHV98_08920"
     CDS             complement(7292..7702)
                     /gene="mscL"
                     /locus_tag="DHV98_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013869551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HCK06447.1"
                     /translation="MLKEFKDFIMTGNVIELSVAVILAGAVGAVVKGFTEYIMMPLVG
                     QFTGGMDFSRFKLILSPAIYDENGGLITAENAILYGTWINSIINLLIVGFILFLVIKS
                     YQKLERKKEAAPPPPPSGPTEIELLQEIRDALKK"
     gene            complement(7833..8951)
                     /gene="alr"
                     /locus_tag="DHV98_08925"
     CDS             complement(7833..8951)
                     /gene="alr"
                     /locus_tag="DHV98_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013620759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HCK06448.1"
                     /translation="MVKEPTLFIDLNALAHNYRALRQQLYADTKFLAVVKASSYGHAP
                     GPVAQKLVDLGVDYFGVAYALEGAELRAAGISTPILLLHPMAAHFEQILAYNLEPSLY
                     SVSLMRQWIDFLESKNITDYPVHLKFNSGLNRLGMNFEEITEVVSAILGTNSLRICSV
                     FSHLGASDDPNAEEFTRDQITRYDSFYETFTEKMRDKNPLFNNPWRHLCNTSGVLNYP
                     EAQYNMVRCGIGLYGYGNDPKYDRLLRPVAQLKAPILQIHQVSAGQSVGYNHGFIAQK
                     PTVIASLPLGHADGLHRIFGKENGCVWIHDQPAPILGNVCMDMLMVDVTNIPCEAGDT
                     AVIFDQQHGAQDFAEGAGTISYELLTGLSKRIRRSIVP"
     gene            complement(8958..9590)
                     /locus_tag="DHV98_08930"
     CDS             complement(8958..9590)
                     /locus_tag="DHV98_08930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010255458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HCK06449.1"
                     /translation="MFLEQAPNNDATYGWMEVICGSMFSGKTEELIRRLRRAELAQQK
                     VAVFKPEMDQRYAQHNVVSHDSNEFAALAVKNASALLTQAIGYDVVGLDEAQFFDDEI
                     VAVCNTLANNGVRVIIAGLDMDYKGIPFGSMPQLMATAEYVTKVHAICSRTGRLAQYS
                     YRLDSNEDLVLLGETQEYQALSRAAFVQAMHERKNNPAKKDSGPSDSPSA"
     gene            9691..10485
                     /locus_tag="DHV98_08935"
     CDS             9691..10485
                     /locus_tag="DHV98_08935"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06450.1"
                     /translation="MIEQNQHKLHEIARDILDLEMSLDESSDPRAQGELLMAIDHLKE
                     HTRLLYEALVVMRHELADFNQTNQPPIFEPSTEKIKDIVAQMPPETQQVDDLFEHITD
                     GSQEAQEVLSHYQEEIEFEPVHPVNVAEEAVQLEPEAAVQSVADHKEETPFAEEIHTE
                     GSTAALKTETQGDLNSTTPKPKSVNDRWGRLSVGLNDRTAFVQHLFLGDVEGFNRVLS
                     QINTFETLDEVNDFLRDQVTPEYNNWEGKEAVADRLMRLVQQRFNA"
     gene            10497..11216
                     /gene="rsmI"
                     /locus_tag="DHV98_08940"
     CDS             10497..11216
                     /gene="rsmI"
                     /locus_tag="DHV98_08940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009782064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HCK06451.1"
                     /translation="MAGKLYLVPTPIGNLQDMTFRAVEVLNQVDLILAEDTRTSAKLC
                     KHFDILTPMKSHHMHNEHKMLQGVIAQLQSGASVAVISDAGTPGISDPGFLLVRAALQ
                     EGVDIECLPGPTAFVPALVASGLPCDRFVFEGFLPVKKGRQTRLTELTQESRTMVFYE
                     SPHKLLKTLTDFCDVFGPERLISVSREISKLHEETIRGTCQSALAHFTQQAPRGEFVI
                     ILAGSIKPSTKEKGSKRTVSQ"
     gene            11213..>12078
                     /locus_tag="DHV98_08945"
     CDS             11213..>12078
                     /locus_tag="DHV98_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007137335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCK06452.1"
                     /translation="MTEKSWQFKPEPDPEMTQNLARALQVPQAAARLLVQRGVESFEA
                     AKQYFRPDWTQLHDPFLMKDMDRAVARIQEEVARGNPIMVFGDYDVDGTTSVSLMMAY
                     LKRYGVPLTPYIPDRYQEGYGISKQGIDVAKQQGIALIIALDCGIKANDQVAYAKTLG
                     IDFIICDHHLPGDTWPEAAAVLDPKRPDCAYPYKELCGCGVGFKLIQALHQSGGDQGE
                     ELAPFLDLVVTAIAADIVPITGENRTLAYLGLKQVNEDPRPGLAALLSSAKAKPYRIR
                     DLVFVAAPRINA"
     assembly_gap    12079..12202
                     /estimated_length=124
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <12203..13058
                     /locus_tag="DHV98_08950"
     CDS             <12203..13058
                     /locus_tag="DHV98_08950"
                     /inference="COORDINATES: protein motif:HMM:PF02272.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HCK06453.1"
                     /translation="APRINAAGRIKHGAHAVELLLAGSAEEAEAMAEAIERYNLERRS
                     LDQEITQQALDQIINRGEQEAIATVVYDPSWHKGVVGIVASRLIETYYRPTVVFTKSG
                     DHLAASVRSVKGFDVYQALEACSEFMLQFGGHKYAAGLTLDPSQFENFKQAFNQEVAR
                     TLTPEQKVPQVAIDLPLPLSEITPKLFRILSQMAPFGPENARPVFAAHQVHVAPYTKA
                     VGADLSHLRLVVHEPNEPTISGIAFGYGAMTEAVKKKGRCDVAYVIDENHWQGQTSLQ
                     LMVKDVRV"
     gene            complement(13039..13791)
                     /locus_tag="DHV98_08955"
     CDS             complement(13039..13791)
                     /locus_tag="DHV98_08955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine hydrolase"
                     /protein_id="HCK06454.1"
                     /translation="MTLPEGKKVYFSSDNHLGAPTPELSKPREQRFVAWLNEIQSDAA
                     ALFLLGDLFDFWFEYRTVVPKGFVRVLGKLAELSDAGIPIYFFVGNHDLWMKDYFKTE
                     LGIPVFHQPQAFSIGDHRFFIGHGDGKGPGDKGYKRMKKVFSSPFFQWLFRWIHPDIG
                     VRIAQYLSVKNKLISGDEDREFLGEDGEWLAQYAKRKLEKTHYDYFIFGHRHLPMTID
                     LGGGSTYINLGDWISHYTYATYDGQQTKLLHP"
     gene            complement(13824..14270)
                     /locus_tag="DHV98_08960"
     CDS             complement(13824..14270)
                     /locus_tag="DHV98_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001297105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HCK06455.1"
                     /translation="MNEIRITKLFSFETGHALYGYDGKCRNVHGHSYKLSVTVVGQPI
                     SDPNHVKFGMVIDFSDLKSIVQEEIVSVFDHATVFNKNTPHVELAHELEQRGHRVLLV
                     DYQPTSEMMVIDFAQKISPRLPEGVRLYSLKLQETESSYAEWHADA"
BASE COUNT         3878 a         3302 c         3297 g         3722 t
ORIGIN      
        1 ataaggtatg cctgcctagt acagcaattt gatccgcata acccaaagct tcataagcgt
       61 cgtgggtcgc ggtgagacaa gtgattcttt tctctttcaa gtacccaaat aggcgatgtc
      121 tcaagtccgc acgccgggga agatctattt ggctaaaagg ctcgtcgagc aataaaattt
      181 gtggctccgt ggcaagggct ttagccaaag caatacgttg tctttgccca ccgcttaaca
      241 aacgggcttt ggtatgcttc attgcagaga ggcccacaac ctctaaaagc tcatccacgc
      301 gctggtcact cgcctttaaa tcaaatctgg gaagatcagc agctatattt tcagccactg
      361 tagtcatggg catcaacgta aattcttgat cgaccagctt catgaacggg gccccgggaa
      421 ttaaaagaga ctcggggcct ggcacttctt gaccaagcca aaaaatctgg cctttgggta
      481 gcggtaaaag accaaaaatc agatgcaaga gcgtagactt tcctccgcca ctttctccta
      541 aaatagctaa atgagcccct tgatccagtg aaaaattcac gtcacgtaaa atgacctctt
      601 cctggtaggc gaagtgttta atattaacct caagtatttt ggatccggcc aaaagatcag
      661 gtttttaagc gctcgcccac atcttcaggg agtacacgat accccatatg gaatagggta
      721 aagccaaaaa tatccgagta ttgctcaatg gttttactca caggagttcc tgcgccgtgt
      781 cccgcgtcag tttcaatcct aatcagtaca ggggcgtccc cgctttgttt ggcttgaagt
      841 tctgccgcaa atttaaaact atgggcaggc actacacgat catcatggtc acctgtggta
      901 actaaggtgg caggataagc cacaccgggc ttgacattgt gcacggggga ataacccaat
      961 agataattga acatctccgc gctgtcttgg gcggttccat aatcatagcc ccaaccggcg
     1021 cctgcggtaa aggtgtggta acgcagcatg tccaaaaccc caaccgcggg caaggccaca
     1081 cgcatcaaat caggccgttg tgtcataacc gcaccgacca agagtccgcc gtttgatcca
     1141 ccgcgcacgg ccaaataatc actgctggtg taatcatttt cgatcaggta ttccgcggca
     1201 gcgataaagt catcaaaaac gttttgcttc tgcatttgag ttccggcctt atgccagttt
     1261 tttccgtatt ctcccccgcc gcgaatattg ggcaccgcat agatgccgcc ctgctctagc
     1321 cagacggcat tgacgatact aaatgaaggt gtaaggctga tattgaatcc accgtagccg
     1381 taaagaattg tagggttttt accgtcgcgc tttagtcctt ttttgtaagt aatgatcatc
     1441 ggcaccttgg ttccgtcttt tgaggtataa aacacttgtt cactggtata gtcctcggag
     1501 ttgaagtcta ttgctggagt tataaataat tccgaagccc cagaggtgat gtccattttg
     1561 taaacgctac ccggagtcgt gtaattggta aaggaataaa agagttcggt ttcgtctttt
     1621 tctgcgccaa aaccgcctgc acttccgggt cctggcaagt taatttgtcg aatttcattt
     1681 ccattgtaat catactgaaa gacctgcgaa atcgcatcaa ccatatactc agcaaaaaga
     1741 tagccccctg cagtattaat ggacaaaacg tgttcttttt caggaataat atctttccag
     1801 tgttctgatg tgggtgcaga taaatcagtg cgtaccacac gcttattcgg cgcatctagg
     1861 ttcgtactca aataaagggt tgtcccgtct gtatcaatca cagaagtgtc gctatcgcta
     1921 tggcccacta tggtgataaa gccgagttct gggcgctcaa aatccataat atagagcttg
     1981 ttccctgaag tggcattact ggcactaacc accaaatagc gctgatcatc ggtcacccca
     2041 cctcctacgt agcggtattt ttcgtctggg tccccgccaa agattaattg gtcctgggat
     2101 tgtactgttc ctaattggtg atagtacaac ttatggcgat ctgttttttc agaaagttcg
     2161 ctgccttttg gtttgtcata acttgaatag taaaagcctt cgtttttata ccaagacaca
     2221 ccactaaact ttacatccac aatggtgtcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnctt
     2401 cgttgccccg ccaagaaagc ccactgaatt tgacatccat taaggtgtcg cccaccaaag
     2461 tttggctttg ggtatccatg actaaaactt ttctccaatc gcttccgccc tctgaaatgc
     2521 tgtaagcggc atagccccca ttttttgaaa aacttacccc gccaagagaa attgtaccgt
     2581 cttctttaaa ggtatttggg tctaaaaaga cttcggcatc ttcggcacta cccccagtct
     2641 tgtagcggta aagaacatat tggttttgta gcccgttgtt tttataaaaa taagtatagt
     2701 ccccttcctt gaatggagca gttacttttt cgtagttcca aagctgtgtg agtcgtgatt
     2761 taagggcctc tcgaaaaggg atttcattta aatgcccaaa ggtgactttg ttttgctcgg
     2821 cgacccaagc acccgtttct tcgctgcgat catcctcaag ccaacgatac ggatctgcga
     2881 ctggagtgtc gaaatactga tcaaccgtat cgatcttttt tgtttctgga taactcaggg
     2941 gactgaattc aggtttttga gtttggttac agctcatcgt gattataatt acagagagaa
     3001 gaataagatt tttcataaag tgaacttttg agactcgaaa atacgcaatt tatgtggcat
     3061 tagttgggat aaaaaaaccg ccgtgtaagg cggtttaatt gtcttatagt aaaacttgaa
     3121 tcggccaagg catcgatcaa gattacctga aaaaggcgtt atccaaatta tttcttgatg
     3181 aatttttggc tacgaacact tccggcctga gtcaatctca agacgtagtt tccttgggca
     3241 agtgcgccta aattgatgct gccattggtc aaaacgcctt gcgtcacgac cttgccttgc
     3301 atatcgaaga catcgtattg tgcgccttcg acgctttgtg ccccactgat cataagcata
     3361 tcgcgcactg ggtttggcga taaaacaaga gacaaaggat cttggtcact tatgccaaga
     3421 atcgtagacc cttctacgat aactatagtt tggtctaccg ccacattttc aagagtatca
     3481 acaattccag aaggccattg aaccgtaatg gtcgcgattt cagtgtcttg tccaaggcca
     3541 aaatgcgtgt ttagggtact catcaatcta aagccctcac cactacgcac ctcacggatt
     3601 tgactcccaa ggtcagacac cacggtaata cgcgctccga taccattgcg attgctttct
     3661 acaccaacag tattgatggt caggtaatgg ttgtcattgg gattgttcat gtggatggtg
     3721 ctcccggtaa atgaatcgat aaaaccatcg taatttaagt ctccgaaact accgttgttg
     3781 cttggcaata cgttgttata aagagtaaag gttaaatctc cgttattcaa gaagatgttg
     3841 ccgtttgaag cgatgtctac aaaaccatca ttatcgaaat cataagcgca gttttcgata
     3901 cccgtagtgg ctaaatcttg caccccagaa gtggcagaaa tatcggtaaa tgtgccatcc
     3961 ccgttattgg tcatgagctt gtgggcaaag ggatccgtac tgttccccac aaaaacatcc
     4021 atatctccat cgttgtcgta atccgcccaa gcagaagacc aagtttgcat cggatccagt
     4081 aaaccggccg tggcggcaat ttcagtaaag ttaccaaagc cgtcattttg atgtagctca
     4141 tcttcacgac gcgcgggttc tccaccacac ttggcgttga acatatctat atctccgtca
     4201 ttgtcataat caatccaaac agagccatag tgcccaccac ttgggtaatc gccaattcca
     4261 ccttggaaat aagtcaaatt accttgacca tcattgatgt agtatacatt aggctcaacg
     4321 tcgtgacaca caaaagcgtc taggtgccca tcgttgttga tgtcgacgaa gttggagcgt
     4381 tgtgagaaca cgtattgtgg aaaagaaatt tcttgaaaac catcacctga attattggcg
     4441 cgcataatgg tcacaccgtt gcctcctccg tagagcaaat cagtataacc gttgccatcg
     4501 taatcggccg ccgcaagact ccaagacggt aagttgtctg caggagaggt aaacaagatt
     4561 tcctcaataa aagagccatc ggcttgctga taaaagattt ggatggatga agttgctaca
     4621 gagacaatat cgtctaaaaa gtcaccattc atgtccacta ccgcgcgatc agagcgattg
     4681 gtgtcgatga attcaggggt aaaagaaatt tgaccaaaag ccgttgcggt gcaggctatt
     4741 agggttgcaa gagtaaagag tgatttcata aagtaaaaat taatgtttgc ttagtcacaa
     4801 acggtcgtta agttttggat ccattgttca ataaattcta aagactcgtc atgacgaaga
     4861 cttcggccta ataatggcat gcggtattct tcatctgtcg tatgcagtct aaagaaaagc
     4921 acggagcctt gtgcattacc tggctcaata attttggcgt tttcataccc cggtataggc
     4981 gtgtctggat caacacacac cccgagattt gctaaatcag cactactgga aaacgtcatg
     5041 cgcaaagcgc gataatcgca atgtccactg tcgctgtgac aactcgcaca attaatgtca
     5101 aaataggagc gaacacgtgt ctctagatcc agagtttcgt ctgaccaatc cactacggta
     5161 ttgatttgac tcgggaagcc ggggtcaagg taacccacat cggcccattt ttgaagctga
     5221 ttttgggccc cttctgtata atcaaataac ccgttaagat tctggggctt gggtcctatc
     5281 ggtgtttcat cttgataggc cttatgacac gtatagcatt ggctatttga ggggatacga
     5341 tagtttacaa agttggtttg gccattttcc acccattcga tgggtacatt cgcaccataa
     5401 ccttctacat cgagcatggc ttcctgctgc tcggcatccc aaatataatc ggcaaataac
     5461 caaccctctt cttttttgat caacaagcgg gtttcaatga tttgtgtggt taaatcaggc
     5521 aaaacattat catagtagaa cgttttgatc agcacagccc cggttggaaa gttgagcaaa
     5581 acatcgtcac tcatataagc agcgctgctg ccttccggca tccaaacaaa acgttttttg
     5641 tgcgcgtaat ctgtaaatag ggtgctaatg ggctcatagg gtaaaacacc aaatgctggc
     5701 tcctgttgcg ccatggaccc ttcaaaaaaa ttatagtcgg aaagttttgg ataggggact
     5761 aaggacaaat ccagacttac tggagtcacc ggcaaaatat tgatggtaat gagggcgttg
     5821 ctgcattgat tccccaaccc atcgcatacg ctgtaaataa aactatcttc acccaaggct
     5881 ccaggatttg gggtataagt gagccgtgct tctccgaggt tattgtgcgc agtgatactc
     5941 gcggttcctt tgcttggggc gtccagtaga atttgcccat caatcggaac attagtgtcg
     6001 ttttctaaaa tatcaagggt taaaacagca ttttgaaaaa cctctgcttg atctcctaga
     6061 gcattaatat tcaagggggt gtatccattg tcgtcatcac tacaactcca aagccccaat
     6121 agcgcaatta gggtcaaaag agggaatcgt atcatgtttt ttgcacgcat accttgaatg
     6181 tcttctaaag ttggcataga aaggctaaaa tactaaatta ttgcatacaa aacgtgccaa
     6241 taaatttgag cttaatctgc ccgtataacg gctttgatta atcagataaa agaagcctta
     6301 aataagatga ttcgcacaca aatattctgc gatttgaaca gcattggtgg cggctccttt
     6361 gcgcaaatta tccgcgacaa tccagagatt caggctattt gatgcgctaa gatcccggcg
     6421 caatcgaccc acaaagacct catcttttcc atgagcgcta accggcatgg gataacgatt
     6481 gtttacaggc tcatcctcca aaatcacacc tggggtattg tccagaatat ggcgcacctc
     6541 ggacaggtca aaatcgcgat taaaagtcag gttaaccgac tcgctgtggc ctccttcagt
     6601 ggggatacgg acggctgttg cactgatttt aaaactcgaa tctcccatga ttttctgtgg
     6661 ctccgtagcg agtttcattt cttctttagt gtaaccattg tccaaaaaca catcacaatg
     6721 aggcaatgca tttttgtgga tcggatgggg gtatgctttg ggcccattga tcccactaat
     6781 ttcatcattc aactgttgaa cggccttttg cccagtgcca gaaaccgatt ggtaggttga
     6841 aaccagaacg cggttaattc catatttttt gtggagcggc gccatcacca taaccaattg
     6901 tatcgtcgag cagtttgggt tggcaatgat tttgtcttct gcagttaaaa tagcggcatt
     6961 tatctctgga acgacgagtt taatttcagg atgcatgcgc caaaaagatg aattgtcaat
     7021 aaccgtgcac cctatttcag cgaatcgagg cgcccagtcc cttgagacat cgcctccggc
     7081 cgaaaaaagg gcgagttcag gcttttgatc aagcgcttct tgaagcccta tgatcgtatg
     7141 gggctgcccc tgaaaaacaa cttttttgcc gattgaggcc gcactggcta cagggattaa
     7201 ttgtgaaacg ggaaatgacc gagacgctaa agaatctaac ataatttgtc cgaccatacc
     7261 agtaacgccg actacagcta ctctcataac actatttttt cagagcatct ctaatttctt
     7321 gtaacaactc tatctccgtt ggtcctgacg gcggcggcgg tggcgcggcc tctttttttc
     7381 gctcaagttt ttgataactt ttaataacca aaaaaaggat aaaaccaacg atcaataagt
     7441 tgatgatgct attgatccaa gtcccgtata aaattgcatt ttcggcagta attagcccac
     7501 cattttcatc ataaatcgct ggagataaaa ttagtttaaa tctagaaaaa tccattcctc
     7561 cagtaaattg tcccaccagg ggcatcataa tgtactcggt aaaacctttg accacggcac
     7621 ccacggcacc agctaaaata accgccacgg acagttcaat gacattgcct gtcatgataa
     7681 aatctttaaa ttctttgagc ataaaggatt tgattaggtg gttaaatcta agaaaatatg
     7741 ttcaaagttt attcaagaaa aaacccagtg cgcagaagct tctcccgaat ttggcctgac
     7801 gagttgtgtt ctgagacatc accatggaat gattagggca caatggagcg cctgattctt
     7861 ttagaaaggc cggtcaagag ttcataggaa atggtcccgg ccccttcggc aaaatcttga
     7921 gccccgtgct gttgatcaaa tatgaccgca gtgtcaccgg cctcgcacgg gatgttggtc
     7981 acatcgacca tcagcatgtc catacaaaca tttcctaaga taggggcggg ctgatcgtga
     8041 atccaaacac agccattttc cttgccgaaa attctgtgca atccatccgc gtggcccagc
     8101 ggaagactgg cgattacggt gggcttctgg gcgataaaac cgtggttata acccacgctt
     8161 tgccccgcag agacctgatg aatttgtaaa atgggcgctt ttaattgtgc tactggacga
     8221 agtaaacgat cgtattttgg gtcattgcca taaccataaa ggccaatgcc acaacggacc
     8281 atattgtatt gagcctcagg gtaatttaag actccagaag tattgcacag atgtcgccat
     8341 ggattgttaa acagcgggtt cttatcgcgc attttttcag tgaatgtttc gtagaaagaa
     8401 tcgtatcgag tgatttgatc gcgcgtgaat tcttctgcat ttgggtcgtc acttgcccct
     8461 aaatgagaga aaacggagca tattctcaaa gaattcgtgc ctagaatcgc gctgaccact
     8521 tctgtaattt cttcaaaatt catccccaag cgattgagcc cagagttaaa cttaaggtgc
     8581 accggataat cggttatatt tttggattcc aaaaagtcaa tccattggcg cattagtgaa
     8641 acactataga ggctgggctc taaattgtag gccaaaattt gttcaaagtg ggccgccatg
     8701 gggtgcagta acaatatggg cgtactgatg ccagcggccc tgagttcagc cccttccagg
     8761 gcataggcca ccccaaagta atcgacgccc aaatcgacca atttttgggc gacaggacca
     8821 ggggcatggc cataggaaga cgcctttacg accgccagaa atttggtgtc tgcatagagt
     8881 tgttgcctta aagcccggta attatgtgcc agggcgttta aatcaataaa taaggtgggt
     8941 tcctttacca tagagggtta tgcgctgggc gaatccgaag ggcctgagtc ttttttggcg
     9001 ggattatttt ttcgttcgtg catggcctga acaaaagccg ctctgctcaa agcctgatat
     9061 tcttgagttt cacccagcaa tacgagatct tcatttgaat ctagacgata actgtactga
     9121 gccaaacgcc ccgttctact gcaaatagca tggactttag tgacgtattc tgcggtggcc
     9181 attaattggg gcatggatcc aaagggaatt cccttatagt ccatgtctag gcctgcaata
     9241 attacgcgga ccccattatt ggccaaagta ttgcaaaccg cgacaatttc atcatcaaaa
     9301 aactgggctt cgtcgaggcc gaccacgtca tagcctatgg cctgggtcaa aagggcgctc
     9361 gcatttttta ctgctaaagc tgcgaattca ttgctgtcat gagaaaccac attgtgttgg
     9421 gcatagcgct gatccatttc tggcttaaac acagctactt tttgttgggc cagttcagcc
     9481 cgcctaagcc ttctaattaa ctcttcggtt ttacccgaga acatggaccc gcaaataact
     9541 tccatccaac cgtatgtcgc atcgttattt ggagcctgtt caagaaacat attgagcgga
     9601 ttagaataaa atggatttct ttgacgtttc gtattaggat gcgtaaattt aacaaaacaa
     9661 aatagagtgc gacccgctta gccaaaaaga atgatcgaac aaaaccaaca caaactccat
     9721 gaaatcgctc gcgatatatt ggatttagag atgtcgcttg atgaatcgag cgatccaagg
     9781 gcgcaaggcg aattattgat ggctatagac catctcaagg agcacacgcg tttactttat
     9841 gaggccttag tagtgatgcg tcacgaatta gcggacttta accaaaccaa tcagccccct
     9901 atttttgagc cttcaacaga gaaaataaaa gacattgttg ctcagatgcc tcccgaaact
     9961 cagcaggttg acgacttatt tgagcatatc actgatggca gtcaagaagc ccaagaggtc
    10021 ctttctcatt atcaggagga gatagaattc gagccggtgc atccagtgaa tgtagccgaa
    10081 gaggccgttc aactggagcc cgaagcggcc gttcaatcgg tggccgatca taaagaggag
    10141 acgccctttg ccgaggaaat ccatacagag gggtccactg cagcactcaa gacggaaact
    10201 caaggcgacc ttaattcaac aacaccaaaa cccaaatcgg tcaatgatcg atgggggcgt
    10261 ttgtccgtgg ggcttaacga tcgaacggca tttgttcaac acctgttttt gggcgatgtg
    10321 gaaggattta atcgggtgct ttcacagatc aatacgtttg aaacccttga tgaagtcaac
    10381 gattttttaa gggatcaggt cacgccagaa tacaacaatt gggagggaaa agaggccgtg
    10441 gccgatcgat taatgcgtct cgttcaacaa aggtttaacg cctaatacag cgatcgatgg
    10501 ccggcaaact ctatttagtc cctaccccga taggtaactt acaagacatg acttttcggg
    10561 ccgttgaggt gttgaatcag gtggatttaa tcctagccga agacacccgc accagtgcca
    10621 aattatgcaa gcattttgac attctgaccc cgatgaagag ccaccatatg cacaacgagc
    10681 acaaaatgct tcaaggggta attgctcagc ttcaatcagg cgcctcggtc gcagtaatca
    10741 gtgatgcagg gacgcctgga attagtgatc cgggatttct tttggtgcgt gcagcccttc
    10801 aggaaggcgt ggacatagag tgtctgccgg gcccaacggc ctttgtgccg gcgcttgtcg
    10861 ccagcggatt gccctgcgac cgatttgttt ttgaaggttt tctgcccgta aaaaaaggcc
    10921 gccagacgag attgaccgag ctcacgcagg aatccagaac gatggttttt tatgagtccc
    10981 cgcataagct gctcaaaacg ttgaccgact tttgtgatgt ttttggtccg gaacgcttga
    11041 tctccgtatc gcgcgaaata agcaaactgc atgaagaaac cattcgcggg acctgtcaat
    11101 cggcattggc gcattttacg caacaggccc cgcgcggtga gtttgtcata attcttgcag
    11161 gaagcataaa accatccact aaagaaaaag ggtccaaaag aacagtgagc caatgaccga
    11221 aaaaagctgg caatttaagc ccgaacccga tcctgagatg acccagaact tagcgcgggc
    11281 cttgcaggtg cctcaagccg cagcgcgact tttggtgcag cgcggggtag agagttttga
    11341 agccgccaaa caatatttta ggccagactg gacccaactc cacgatccat ttttaatgaa
    11401 agatatggat cgcgccgtcg cccgaatcca agaggaagtg gcccgcggca atccgatcat
    11461 ggtttttggc gattacgatg ttgacggaac cacgtcggtt tcactcatga tggcttattt
    11521 aaagcgctat ggcgtgccgc tcaccccata tattcccgat cgttaccaag aaggatacgg
    11581 gatttcaaaa caagggattg atgtggccaa acaacaaggt attgccctga tcatcgcctt
    11641 ggattgtggg ataaaagcca atgatcaagt ggcgtatgcc aaaacactgg gtatcgattt
    11701 tattatttgt gatcatcact tgcccgggga tacttggccc gaggccgcag cggtactcga
    11761 cccaaaacga cccgattgcg cttatcctta taaggaattg tgtggctgcg gggtggggtt
    11821 caaactcatt caggcgctgc atcaaagcgg cggggatcaa ggggaagaat tagccccctt
    11881 tttagactta gtggtgacgg cgatcgctgc agatattgtc cccataacag gagaaaacag
    11941 aacgctcgct tatttaggat taaaacaagt caatgaagat ccgcgcccgg gattagcggc
    12001 gcttttgtcc agcgcaaagg ccaagcctta tcgaatccgt gatttagttt ttgtggccgc
    12061 tccgcggatc aacgccgann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12181 nnnnnnnnnn nnnnnnnnnn nncgctccgc ggatcaacgc cgcgggcaga atcaagcacg
    12241 gcgcccacgc ggtagaactc cttttggcag gctcagctga agaggccgag gccatggccg
    12301 aggcgattga acgctataat ctagagcgca gaagcctgga tcaagagatc acacagcagg
    12361 ccttagatca aataataaat cgaggggagc aagaagcgat cgcgacagtg gtgtatgatc
    12421 cgagttggca taaaggcgtg gtggggatcg tagcctcacg acttatagaa acgtattatc
    12481 ggcctacggt ggtgttcaca aaaagcgggg atcacctggc ggcatctgtg cgctcggtaa
    12541 aaggtttcga tgtctaccaa gctttagagg cgtgtagtga atttatgttg cagtttggag
    12601 ggcacaaata cgccgcggga cttaccctag atccaagcca atttgaaaac tttaaacaag
    12661 cctttaacca agaggtagcg cgcacgttga ccccggaaca aaaagtgcct caagtggcca
    12721 tagacttgcc cttgcctttg agcgaaatca cccccaagct cttcagaatt ttgtcgcaaa
    12781 tggcgccttt tggcccagaa aatgcgcgcc cggtatttgc cgcccatcaa gttcatgtgg
    12841 cgccctacac taaggcagtc ggcgcagatc tcagtcactt acgtcttgtg gttcatgagc
    12901 ccaatgagcc cacaatttca ggaattgcct ttggatacgg ggctatgacc gaggcagtta
    12961 aaaagaaagg acgttgtgat gtggcctatg tgatcgacga aaatcactgg caggggcaga
    13021 cgagtttaca gctgatggtt aaggatgtaa gagtttagtc tgctgcccgt cgtaggtcgc
    13081 gtaggtataa tgcgaaatcc agtctcccag attaatataa gtagaaccgc cacctaagtc
    13141 tatggtcatg ggcagatgac gatgaccgaa aataaagtaa tcgtaatggg ttttttccag
    13201 ttttcgcttg gcatactgtg cgagccattc cccatcttcg cctaaaaact cacgatcttc
    13261 gtctcccgaa atgagtttgt ttttaacgga taaatattgg gcgatacgta cgccgatatc
    13321 tgggtgaatc cagcgaaata gccattgaaa aaacggactg ctaaagacct tcttcatgcg
    13381 tttatagcct ttgtctccgg ggcctttacc gtcgccatgg ccaataaaaa agcggtgatc
    13441 cccgatacta aaggcttgtg gctgatgaaa aacaggaatg ccgagctcgg ttttgaaata
    13501 atccttcatc caaagatcgt gattgcctac aaaaaaatag atgggaatcc cggcgtcgct
    13561 tagctcagct aattttccaa ggactcggac aaacccttta ggcacgacag tgcggtactc
    13621 aaaccaaaag tcaaacaagt cccccagaag gaatagggca gcggcatccg attgtatctc
    13681 attgagccag gccacaaagc gctgttcgcg gggtttactc aactcagggg taggcgctcc
    13741 gaggtgattg tcactcgaaa agtagacctt tttgccttcg ggcagcgtga tatggatggt
    13801 ttgctctggc aaatgggctt gttttatgcg tcagcatgcc actcggcata actgctttcg
    13861 gtttcttgga gttttaacga atagagtcgg acgccctctg gcaggcgggg gcttattttt
    13921 tgggcaaaat caatgaccat catttcacta gtaggctgat aatctaccag taatactctg
    13981 tgtccgcgtt gttccagctc atgggccaat tccacatgag gcgtgttttt attgaataca
    14041 gtagcgtggt caaagacaga aacaatttct tcttgaacga tagacttgag atcagaaaag
    14101 tcgataacca taccgaattt tacatgattt ggatcgctaa tgggttgacc aacgaccgtc
    14161 acggagagtt tgtagctgtg gccgtgtaca ttgcgacatt tcccgtcata accgtagagg
    14221 gcgtgcccgg tttcaaagga aaaaagcttg gttatacgta tttcattcat ggggctaaag
    14281 ataatggttt ttggtctacg aactaacgac tcggctgggg cgtgttctgg aaaagtaagg
    14341 ccagctaatt tttctgagca agcgccaaag ggtaatagtc ttttcgaaat ttaaccatga
    14401 gcacaagggc tcggcaaacg atccaggcca aaagggccca ccaaatgcct ttgagcccag
    14461 atcggaagag c
//
LOCUS       DPUP01000231            3028 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_22115,
            whole genome shotgun sequence.
ACCESSION   DPUP01000231 DPUP01000000
VERSION     DPUP01000231.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>312)
                     /locus_tag="DHV98_08965"
     CDS             complement(<1..>312)
                     /locus_tag="DHV98_08965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002990621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCK06456.1"
                     /translation="LFVVDAMTGQDAVNTAKAFNDRLNFDGVILTKLDGDTRGGAALS
                     IRSVVDKPIKFIGTGEKMDALDIFYPERMADRILGMGDVVSLVERAQEQFDEEAARKI
                     QK"
     assembly_gap    313..560
                     /estimated_length=248
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<561..1081)
                     /locus_tag="DHV98_08970"
     CDS             complement(<561..1081)
                     /locus_tag="DHV98_08970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HCK06457.1"
                     /translation="MFDSLSEKLDKALHNLKGHGSITEVNVAETLKEVRRALLDADVN
                     FKIAKEFTNSVKEKALGQNVLTTLQPGQLMVKLVKDELTELMGGAAEGLNLQGNPTVI
                     LMSGLQGSGKTTFSGKLAQFLKTKKSKQPLLVACDVYRPAAINQLHVVGDQIGVPVFS
                     DPDEKDPVKIAQAA"
     gene            complement(1252..1446)
                     /locus_tag="DHV98_08975"
     CDS             complement(1252..1446)
                     /locus_tag="DHV98_08975"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06458.1"
                     /translation="MCDVDGNSSDDDDDFILDFAVPESSDFEDLIDDWDFISVSNTKI
                     ELIDISGGNGGTDYLTFERF"
     gene            1450..1833
                     /locus_tag="DHV98_08980"
     CDS             1450..1833
                     /locus_tag="DHV98_08980"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06459.1"
                     /translation="MKWALNAKVKKVKLSLGGQWHSGLPYTDTAGTLEINELGAYIPQ
                     YEDPNERRLMPYFRMDFAAEYSWWTQNNTEYRINLGLLNITDQENVLGRRFRGELNSS
                     GSPEINTINTYSLGFTPNIAFMIAW"
     gene            complement(1839..>3028)
                     /gene="argS"
                     /locus_tag="DHV98_08985"
     CDS             complement(1839..>3028)
                     /gene="argS"
                     /locus_tag="DHV98_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013073227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HCK06460.1"
                     /translation="QVYKEQQKDLLAQGRTQEQAEAEAPAILAAKEMLRQWEQGDPDV
                     VALWKTMNQWVYDGFEQTYKKLGVDFDKNYFESETYLLGKKDIAHGLTQGVFYQKEDG
                     SVWCDLTDQGLDQKLVLRSDGTSVYMTQDIGTAIQRMSDYPDANGMIYTVGNEQDYHF
                     KVLFLILSRLGYSWAQNLYHLSYGMVDLPSGKMKSREGTVVDADDLIDQMEQTAQEIT
                     ESLGKIDALSDQEKTALFKTIGLGALKYYILKVDPKKRILFNPEESVDFQGNTGPFIQ
                     YAYARIQSIIRKAQKEYSSLLSEKSFENLTLTDKERSLIKTLMQYPDKIQEAAAAYSP
                     ALIANFTYDLVKEFNAFYQNVSILGAEDDSLLCFRVYLADRVGQVIKSSCRLLGIDVP
                     NQM"
BASE COUNT          788 a          690 c          537 g          765 t
ORIGIN      
        1 cttctgaatc ttgcgcgcgg cttcttcgtc aaattgttct tgagcgcgct cgactaagga
       61 aaccacatcc cccatcccga gaattcggtc cgccatacgc tcgggataaa aaatatcgag
      121 ggcatccatc ttttcccccg ttccgataaa ctttatcggc ttatccacaa ctgagcgaat
      181 ggaaagcgca gcccctccgc gcgtatctcc atcgagctta gtgagaatca ctccgtcaaa
      241 attcagacga tcattaaagg ctttggcggt attgacggca tcttgcccgg tcatggcatc
      301 caccacaaaa agnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn gccgcctgag caatcttaac agggtccttt tcatctggat
      601 cactaaacac gggaactcct atctgatcgc ccaccacatg caattgatta attgcggcag
      661 gacgataaac atcacacgcc accaaaagtg gttgtttgct ttttttagtt tttagaaact
      721 gagcgagctt acccgagaag gtcgttttac cactcccctg cagcccagac atcaaaatca
      781 ctgtaggatt cccttgaaga tttaaccctt cagccgcacc gcccataagt tcagtcagct
      841 catctttaac gagctttacc attaactgcc caggctgtag cgtggtcaaa acattctgac
      901 ccagcgcctt ctcctttact gagttggtaa attcttttgc gattttaaag ttaacatcag
      961 catcaagtaa ggcgcgccgc acctccttta gggtctccgc aacgttgacc tcggtgatgc
     1021 ttccatggcc ttttaaattg tgtaaggctt tgtctaattt ttcacttaaa ctatcaaaca
     1081 tgattcattc taaaataaga ttgtaaagat acacattgcg cgggcacaat caaaaagaag
     1141 acggcgtcaa aaaacgccct tagaaaacaa aaagacccgg ccaatggccg ggtctttttt
     1201 aatctgcagc gatcaacagt tctctatcaa acctgtttaa gatccaatag attaaaaacg
     1261 ctcaaaggtc aaataatcag tacctccatt acccccgcta atgtcgatga gttcaatttt
     1321 ggtattgctc acagaaataa agtcccagtc atcgattaaa tcctcaaaat cactggattc
     1381 cggcacagca aaatcaagaa tgaaatcatc gtcatcatcg cttgaatttc catcgacatc
     1441 acacatcaag tgaagtgggc cctaaatgcg aaggttaaaa aagtaaaatt atccctgggc
     1501 gggcaatggc atagcggtct cccctatacg gatacggcgg gtacgcttga aatcaatgaa
     1561 ttaggcgcct atattccgca atacgaagat ccaaacgaac ggcgccttat gccctatttc
     1621 agaatggact ttgcggctga atactcgtgg tggactcaaa ataataccga atatagaatc
     1681 aacttaggtc tactgaatat aacggatcaa gagaacgttt tggggcggcg atttcgcggg
     1741 gaattaaatt cttcgggtag tccagagatc aacaccataa acacctatag cttgggcttc
     1801 acgccgaaca ttgcctttat gattgcttgg tagcggtctt acatctgatt gggaacatcg
     1861 atgcccaata aacgacaaga ggacttaatc acctgtccta cccgatcggc caaataaacc
     1921 ctgaaacaca aaagagaatc gtcctcagcc ccgagaatag acacgttttg ataaaatgca
     1981 ttaaactcct ttactaaatc ataagtaaag ttagcgataa gggcaggact ataggccgcc
     2041 gccgcttctt gtattttatc ggggtattgc attaaggttt ttatcagtga tctctcctta
     2101 tcggttaacg tcaaattttc aaaagacttc tctgacaaaa ggcttgaata ttctttttgt
     2161 gctttgcgta taatcgattg aattcgggcg taagcatatt gaataaatgg ccctgtgttc
     2221 ccttgaaaat cgacactttc ctccggatta aaaagaatac gctttttggg gtctactttg
     2281 agaatataat attttaaagc gccgagacct atggtcttaa ataaggcggt tttttcctga
     2341 tcagaaagcg cgtcaatttt tccaagactc tcagtaattt cttgggccgt ttgctccatt
     2401 tgatcgatta aatcatcggc atctaccacg gtcccctcgc gagacttcat tttgcctgaa
     2461 ggtaggtcca ccataccata actgagatga tataggttct gcgcccaaga atagcccaac
     2521 cttgataaga tcaggaacaa tactttgaaa tgataatcct gctcattacc cacggtataa
     2581 atcatgccat tggcatcggg ataatcactc atcctctgaa tagccgtacc gatatcttga
     2641 gtcatgtata ctgacgtccc atcactgcgc aataccagct tttgatccag accttggtcc
     2701 gttaaatcac accaaaccga accatcttct ttctgataaa atacgccctg ggtcaaacca
     2761 tgcgctatgt cttttttgcc caaaagatag gtctcactct caaaataatt cttatcaaag
     2821 tctacaccga gctttttgta ggtttgctca aagccatcat aaacccactg attcattgtc
     2881 ttccataaag caacgacatc cgggtccccc tgctcccatt gacgaagcat ctcttttgcc
     2941 gctaaaatag cgggggcctc ggcttcggcc tgctcctgag tcctcccttg agcgagaaga
     3001 tctttttgtt gttctttata aacttggt
//
LOCUS       DPUP01000232           12473 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_7033,
            whole genome shotgun sequence.
ACCESSION   DPUP01000232 DPUP01000000
VERSION     DPUP01000232.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12473)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12473)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12473
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..499
                     /locus_tag="DHV98_08990"
     CDS             <1..499
                     /locus_tag="DHV98_08990"
                     /inference="COORDINATES: protein motif:HMM:PF17116.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5103 domain-containing protein"
                     /protein_id="HCK06461.1"
                     /translation="GIRRVELNEVFEHYLYTQNPRAKRPYTFNPDVNGNFVIRALGTN
                     NSSIEAEYILTHFSLSYTPEENQRVFVYGNFNNYATQETNELYYNPDSGLMETILFLK
                     QGFYNYTFASQINDGPIDLGRINGNYWETENEYTVLVYYKGPGERYDRLIGWGRGNST
                     SITNN"
     gene            654..2279
                     /gene="pruA"
                     /locus_tag="DHV98_08995"
     CDS             654..2279
                     /gene="pruA"
                     /locus_tag="DHV98_08995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016989937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-pyrroline-5-carboxylate dehydrogenase"
                     /protein_id="HCK06462.1"
                     /translation="MDKGVFSVPKPHNEPVKSYAPGTPERAAVLAAYTQMYHQTIEVP
                     LYINGQDVRTGNTQSMNPPHDHQHALGIFHKASKNEVHQAIDTALSAREKWAQTPWEQ
                     RAAIFLRAAELIAGPYRARINAATMLAQSKTVHQAEIDAACEFIDFLRFNVAYMTEMY
                     QEQPHSTAETWNRLEYRPLEGFVYAITPFNFTAIAGNLPSSAALMGNVVIWKPSDAQV
                     FSAQVVLEVFKEAGVPAGVINMIMGDPVMITEEILNHPEFSGLHFTGSTDVFKNLWQS
                     IGHNIHKYKTYPRIVGETGGKDFIVAHPSADVDGLVTAIIRGAFEFQGQKCSAASRCY
                     IPESLWEVVSQKLTQELQTIKQGSPEDPQNFMTAVIHEGSFDKLAHYIDQAKKDQDAE
                     IIFGGGYDKSKGYFIQPTVIKTNNPHYKTMETELFGPVLTIYVYQDQDWAQTLKLVDQ
                     TSDYALTGAVFSQDRYALDQAVVALENSAGNFYINDKPTGAVVGQQPFGGARASGTND
                     KAGSKLNLYRWVSPRTVKEQLVVAKNYRYPFMD"
     gene            complement(2347..>2812)
                     /locus_tag="DHV98_09000"
     CDS             complement(2347..>2812)
                     /locus_tag="DHV98_09000"
                     /inference="COORDINATES: protein motif:HMM:PF11551.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06463.1"
                     /translation="EFPTADVLSLAGIDSPVAIGLTSSLNGRALSVNVSIASEEALSD
                     HKLVVYLTEDGLLRDQTNYYDNDQSSPYFGLGNPMVDFEQKHVLRAALTDAIGDPIPA
                     LNALADYNTQISYTIPEDFAIDQLQLVVMVVDQNNLAVNTQHAAIEETIIYQ"
     assembly_gap    2813..2897
                     /estimated_length=85
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2898..3474)
                     /locus_tag="DHV98_09005"
     CDS             complement(<2898..3474)
                     /locus_tag="DHV98_09005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06464.1"
                     /translation="MSSNFRNVLLYSLGVVLFYACSEKEDFSSFNTNTVEPINIGLTY
                     RAASLRNQEITFQVFDEESNEIVDNITFYVDGSPIMGNTFSADQEGVFSVYAEYEDQG
                     TLSTTDTESFSVVIPTKNVLVEDYTGTWCGYCPAVSAAVDAVQGLTDHISIVALHNGD
                     DLSLAIEPDIREGLGVPSGSPRARIDRTIVWG"
     gene            3640..4122
                     /locus_tag="DHV98_09010"
     CDS             3640..4122
                     /locus_tag="DHV98_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein"
                     /protein_id="HCK06465.1"
                     /translation="MKNIILGLLLFISGTLMAQDSLPDIALATLDGQSTSLVKEASKS
                     PLTIISLWATWCVPCIKELDAISEIYTDWQEETNVSLIAVSIDDARTVRRVRPMINGK
                     GWDYTILLDTNNDVKRALGAATVPLTVLVKNGQIIYRHSGYAPGAELELYEQILANAE
                     "
     gene            4140..>5219
                     /locus_tag="DHV98_09015"
     CDS             4140..>5219
                     /locus_tag="DHV98_09015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06466.1"
                     /translation="MKKLLYASCFLALTPLWGQNNQGYLYGGYESNSQWLLDDTELKL
                     SDTDPGFLAPEDAFRANNYLQLNYNIGDFTAGVQYESYLPSALLGYSPTFDNNNGIAY
                     YFLNAKLQDLDITAGYFYEQFGSGLILRSWEDRQLGINSAIQGARVKYNVNNFVSFTA
                     LVGQQRNGFELTEGVINGYDLNYDLGQQLNFLRGDLRFGASYVSRYQERGTNDQIPSN
                     VGALSGRMDWRFGGLYGNIEAIKKDADVIANEGXSNRLYDGTALQANLGYSQKGLGAS
                     TTFRRLENFNFYADRLAEGNQFNQQLISYTPALTKQQDYLLTNIYVYNAQPRLITDPL
                     DQRAGEVGFQSDVYFSFPKESTLGKL"
     assembly_gap    5220..5362
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5363..5932
                     /locus_tag="DHV98_09020"
     CDS             <5363..5932
                     /locus_tag="DHV98_09020"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06467.1"
                     /translation="AANFSYWAGLEATFYDDQSYDVEFIGSGDRYFRDINAEIKNRWN
                     KNLNTVLTYQNVIADKGVVLGGPLGSQGDIKASIIVAEGTYKLGSGRSVRLVGQHLST
                     EQDRKNWAGAVMEYNFNSKLSVYGADAYNYGGETQVHYYNFGGSYTQGRVRFAMNYGR
                     QRGGLICVGGVCRFVPENNGLSMNLNVTF"
     gene            complement(6054..6773)
                     /locus_tag="DHV98_09025"
     CDS             complement(6054..6773)
                     /locus_tag="DHV98_09025"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06468.1"
                     /translation="MKTLFTFILSLCTAVAFAQFTVETHDGDPILDGSTWTFGIYGLG
                     IAELPFWVNNESATEEIYTKIEFVSAVNGDGSGVQLCFGLCYTDLVLGGSYPPGSEVV
                     TIQPGENQGFPGDHIANFVDGGGNPIDYVFRFYQVDANGDPIGEDLTITYRYDPNLAV
                     GENAPQVSVLQNLVSTQLKLRAQERMVLDLYDLQGKNVGQYTVSQGDQSIDLTHLSAS
                     MYLAVLQNAAGLQKTFKIVKR"
     gene            7027..8709
                     /locus_tag="DHV98_09030"
     CDS             7027..8709
                     /locus_tag="DHV98_09030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06469.1"
                     /translation="MKHFYNTLVLIFGMTFTMIAQTIVSTNPENKNVILEEFTGIYCT
                     YCPDGHAIAQAIKDANPNDVYLINIHTGSFANPSGNDPDYRTPYGTAIANQSNLTGYP
                     AGTVNRHYFPGSAQNGGTGTAMSRGAWTARSNQTLGEASYMNMAVEAEIDIQTNEMTV
                     HVEAYYTGSSPESTNKLNVALLQNNTLGPQTGGGAGNQYNHMHRLIDMITGQWGEDVS
                     PTTAGSFIDRTYTYQIPADHNGIPIEILDLEIVVFMTETTQEVISGSGTTPLYTGITA
                     QNDAAVESIPSIPDQCGFLEPVFELKNYGNDPLTSVDVSYSVNSGAVQTYTWTGNIPA
                     LYSELVTLPGVTFDVQATNTVEISVEADEENNNNTLSETFNQLTFENTNTVSLILNTD
                     AQGQECTWEILNGSGEVVAEGGPYSGVTNITQTFNLPGDCYKFNLRDSGGNGGESVVL
                     YDSDNNVIFNSSGNYGAGAGVPFQTEFILDAGDQFLSQLSIYPNPTNSRVTLLNAQNT
                     KLTVYDVLGKVLMTQSINNSNEIIDLSQLLTGTYFVALDQNGQRRVEKVVKL"
     gene            8740..10428
                     /locus_tag="DHV98_09035"
     CDS             8740..10428
                     /locus_tag="DHV98_09035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06470.1"
                     /translation="MNTKSFLFFLLWAPFLGAQTIVSTAPENAKVILDEFTGIYCVYC
                     PQGHAIAQGIQDNNPGNVFLINIHTGSFANPSGNDPDFRTQWGAAIANQSQLVGYPAG
                     TVNRHYFPGTAQNGGTGTAQSRGTWAATSNENLGYASYLNMATEVSVDVSTGEMTVLV
                     EAYYTGSSPEPSNFLNVALLQNNTLGPQTGGNAGNDYNHMHRLVDLITGQWGEEITQT
                     SAGDFVERTYTYQIPADFNGIPVEYADLEVVVFMTENTQEIISGNGAYPTFTGLVNQN
                     DVSVRFIEEIPEQCYGEIAPTINIQNVGIDTLTSVDLVYTINNLTYEYTWTGSLASLQ
                     STSVELPMSPFVFNGTNTVTVTAADDDNNSNNTQTITFADAQEYSGDLTLTITTDGWG
                     SEVTWDVRDYTGAMVANGGPYGNNSTYNETISLPSESCYTFNMYDSYGDGLLSGGVSL
                     VDDQGTVIWQSNGDYGSGASKTFGFQVITLGTNDVQTIGAVLYPNPAQNIVNIVGAEQ
                     ASIAVYDVLGRKVWSQVQANNQVQMDVSALGAGTYFVRLSKGNQTQTEKLIIAR"
     gene            10494..12131
                     /locus_tag="DHV98_09040"
     CDS             10494..12131
                     /locus_tag="DHV98_09040"
                     /inference="COORDINATES: protein motif:HMM:PF11551.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06471.1"
                     /translation="MGQTIVSTNPENAKVILEEFTGIYCTYCPEGHAIAEAIQDQNPD
                     DVFIINIHAGSFAAPLPGDPDFRTPWGTALVQQSELIGYPAGTVNRLFFQGLSQNGST
                     SRAMNRENWESATNQTLANTSYVNLGVESTLNASTGELEIHVEAYYTGSSPVGQNYLN
                     VALLQNNTIGPQTGGGQGNNYVHKHRLVDLITGQFGEEITTTSAGTFIDRTYNYSVPP
                     DYNGVPTQLADLELVVFMAESSQDIISGNASTPDLVVSFQNDLSVGAISPIGEVCYGV
                     LGPEILLQNVGTQTATTAQITYEINGASYNYTWNGNLPSLGQTFVALPAQEFPFNGSN
                     VVAVTIGNDDFNGNNDREIEFFEAEEYQGNLNLTIDTDGFGNEFTWEMLDYTGTVYAS
                     GGPYGSFETITQVISMSEESCYTFKIYDSSGNGGTEVLLRDASGNQILQTDGEFGATL
                     ERTFGYKVETILGQEDPSFAQEVSIWPNPTRGNIELSGLHNNTLFVLSNILGQKIMTG
                     SLQSGQSAIDVTGMTPGVYLLQLTENQRYCVKKIIIE"
     gene            complement(12251..12454)
                     /locus_tag="DHV98_09045"
     CDS             complement(12251..12454)
                     /locus_tag="DHV98_09045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06472.1"
                     /translation="MEGLVAWTHQKIKKDSTHSIPNGILALKGGDLTDELRRYRKCMI
                     YNLSDYFKEQFFETKVVVHVPLG"
BASE COUNT         3671 a         2652 c         2598 g         3320 t
ORIGIN      
        1 aggtatcagg cgcgttgaac tcaacgaagt ctttgaacat tatctataca cacaaaaccc
       61 gcgtgccaaa cgcccctata cattcaatcc cgatgtcaat ggcaatttcg taattcgcgc
      121 tttgggcaca aataactcga gtattgaggc ggaatatata ttgacgcatt tttcattgag
      181 ctatacccct gaggaaaacc agcgtgtttt tgtctatgga aattttaata attacgccac
      241 gcaagaaacg aatgaactgt attacaaccc tgattcaggg ctgatggaga ccatactgtt
      301 cttaaaacaa ggattttata actacacttt tgccagccaa attaatgatg gcccgattga
      361 tttggggcgc atcaatggaa attattggga aacagaaaac gagtatacgg tgctggtcta
      421 ttacaaaggc ccgggagaac gttatgatcg actcattggc tggggccgtg gaaattctac
      481 aagcatcacc aacaattaaa gttcacgggc ttttgcccaa ttatcctttt attttttcat
      541 cattttgact tgacccttac ggcaactcgt cttgggtatg ggcagtattt tttgtacctt
      601 tgccccatgc ataacgcaca agaaactcat cacaattaat acccaaaaca atcatggaca
      661 aaggtgtttt ttccgtacca aaaccacata acgaacctgt taaatcttat gcccctggca
      721 cacctgaacg ggccgctgtt ctcgcggcat atactcagat gtatcaccag accatagagg
      781 tccctttgta cattaacggt caagacgtgc gtactggaaa tacgcagtcc atgaatcccc
      841 cgcatgatca ccaacatgct ctcgggattt ttcacaaagc ctctaaaaat gaagtgcatc
      901 aggctataga cactgctttg tctgccagag aaaaatgggc acaaacccca tgggaacaaa
      961 gagccgctat atttttacgc gccgccgaac tcattgcagg accctatcgc gcacgcatta
     1021 atgcggccac aatgctggct caatccaaaa cagttcatca agccgagatc gatgcagcat
     1081 gcgagtttat tgactttctg cgttttaatg tggcttacat gactgaaatg tatcaagagc
     1141 agcctcattc tacggccgaa acgtggaatc gattggaata tcgtccctta gaagggttcg
     1201 tctatgccat caccccgttt aactttacgg ccatagcggg taatctgcct tccagcgctg
     1261 cacttatggg aaatgtcgtc atctggaaac ccagtgatgc tcaagtcttt tcggcacaag
     1321 tcgttcttga agtattcaag gaagcaggag tccctgcagg ggtcattaat atgattatgg
     1381 gggacccagt aatgatcacc gaagaaatat tgaaccatcc agagtttagt ggacttcatt
     1441 ttacaggttc aaccgatgta tttaaaaatt tatggcagag cattggacac aacatccaca
     1501 agtataaaac ctatccaaga attgtcggag agaccggagg aaaagacttt attgtcgctc
     1561 atccctctgc cgatgttgac ggactggtta cagcaattat tcgtggggct tttgagtttc
     1621 agggtcaaaa atgtagtgcc gctagtcgct gttatatccc tgagagtctt tgggaggtgg
     1681 tgtcgcaaaa actcactcaa gagttacaaa ccatcaagca aggctcccca gaagatccac
     1741 agaactttat gaccgcggtc atccacgaag gatcgtttga taaattggcc cattatatcg
     1801 atcaggcgaa aaaagaccaa gacgcagaaa ttatttttgg cggcggatac gacaagagta
     1861 aaggttattt tatacaaccc accgtaatca aaaccaataa cccgcattac aaaacgatgg
     1921 aaaccgaact tttcggccct gttttgacca tttatgtcta tcaagaccag gattgggcac
     1981 aaaccctaaa actggtggat caaaccagtg attacgccct aacaggagcg gtgtttagtc
     2041 aagatcgtta cgctttagat caggccgttg tcgccttgga aaatagcgcg gggaatttct
     2101 acattaatga taaaccgacc ggggctgtag tggggcaaca gccttttggc ggcgctagag
     2161 ccagcggcac aaatgacaaa gcgggcagta aattaaatct gtatcgctgg gtttccccaa
     2221 gaaccgttaa ggaacaactt gtggtggcca aaaactatcg ctacccattc atggattaac
     2281 actaatccac taggataaca gtgtcctcat gggcttgggc tctaggtatt gtgcctgaat
     2341 gttcggttac tggtaaatta tcgtttcctc tatggccgcg tgctgcgtat tgactgcaag
     2401 gttattttga tcaaccacca tgaccaccaa ttgtaactgg tctatggcaa aatcttctgg
     2461 gatcgtgtaa ctaatttgtg tgttgtagtc tgccaaagca tttagcgccg gtatggggtc
     2521 accaatagca tccgttagcg ctgcgcgtaa aacgtgtttt tgttcaaaat ccaccatggg
     2581 attacccaat ccgaagtaag gactgctttg atcgttgtcg taataattgg tttgatcgcg
     2641 caagagtcca tcttcagtta aataaacgac taatttgtga tcggacaagg cctcctcaga
     2701 tgcgatcgat acattgacac tcaatgcgcg tccgttcaga ctagaggtca aaccgatggc
     2761 tactggagaa tcgatacccg caagactcaa aacatcagcc gttggaaatt ccnnnnnnnn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnatc cccatacaat ggttctatca atgcgtgcac gaggcgagcc
     2941 tgaaggcaca ccgaggcctt ctcgaatatc aggttcgatc gccaatgata aatcgtcacc
     3001 attgtgcaag gccacaatgg atatatggtc cgtaagccct tgcactgcat caacagctgc
     3061 agacactgcg ggacaataac cacaccaggt gcccgtataa tcctcaacaa gtacattttt
     3121 ggtagggatg actacagaaa aactctccgt atccgtagtc gacaaggttc cttgatcctc
     3181 atattcagca taaactgaga acaccccttc ttggtcggcg ctaaacgtat tgcccattat
     3241 aggactgcca tcaacataaa aggtaatatt gtccacaatt tcattggatt cctcatcaaa
     3301 aacctgaaag gtaatttctt gattgcgcaa ggaagctgcc ctataggtta aaccgatatt
     3361 aatcggctct accgtattgg tattaaagct ggaaaaatcc tccttttcac tacatgcata
     3421 gaacaaaact actcccaaag aatacaagag gacattgcga aaatttgaag acatggatcg
     3481 ataattttag gttactgatg gtttgcgaaa atagccaaaa attacatgcc tcctagggga
     3541 ttttttatga agtatgtaaa gacttggcac aaaaccaatg aatacggcaa aaatttcatt
     3601 aatattgtta cccaacttta tcaaaagacg tccattttta tgaaaaatat tattctcggt
     3661 ttgcttcttt ttatcagtgg tacgctaatg gctcaggatt cgcttcctga cattgcctta
     3721 gcaacgctcg acgggcaaag cacttctttg gtaaaggaag ccagtaaatc cccgctgacc
     3781 ataatatccc tttgggcgac ctggtgtgtc ccttgtatta aagaactcga tgcaatcagt
     3841 gaaatttata cggattggca agaagagacc aatgtatcgt taattgcggt ttcgattgat
     3901 gatgcccgca ctgtgcgtcg cgtccgcccc atgattaatg gaaaaggatg ggactacact
     3961 atcctgttag atacaaataa cgatgtgaaa agagcacttg gtgccgcaac cgtgcccttg
     4021 acggttcttg tcaaaaatgg gcaaattatc tatcgccatt ctggttacgc gccaggagcc
     4081 gaactcgagc tttacgagca aattttggct aacgcagaat aatctttatt tatattttga
     4141 tgaaaaaatt actttacgcc agttgttttt tggctctgac accactttgg ggacaaaaca
     4201 atcaaggata cctctatgga ggttacgaat cgaatagcca atggttgctt gacgatacag
     4261 agttaaaact ctccgataca gacccgggat ttctggcccc agaagacgct tttcgcgcca
     4321 acaactactt acaactcaat tataatattg gtgattttac cgcaggggtt caatacgaaa
     4381 gttacctacc ctctgccctt ctagggtata gtccgacctt tgacaacaat aacggaatcg
     4441 cctattactt tttaaacgcc aaacttcagg acttggatat tactgcgggt tatttctacg
     4501 aacaatttgg tagtggttta attttacgca gttgggaaga tcgtcaattg gggattaatt
     4561 ctgcgattca aggggctcgc gtgaaatata acgtgaacaa ctttgtatca tttaccgctt
     4621 tggtgggaca acaacgcaat ggatttgagc ttaccgaagg ggtcattaat ggttatgacc
     4681 ttaactatga cttaggtcag caattaaatt tcttgcgcgg cgatttgaga tttggtgcca
     4741 gttatgttag tcgctatcaa gaaagaggga ctaatgacca aatccccagt aatgtaggcg
     4801 ccctgtccgg acgcatggat tggcgttttg gcggtttata cggtaatatt gaggccataa
     4861 aaaaggacgc tgatgtgatt gctaatgaag gcnnttcaaa tcgtctttat gacggcacgg
     4921 cacttcaagc caatttgggc tattctcaaa aaggattagg ggccagcaca accttcagac
     4981 gcttggaaaa ttttaatttc tatgccgatc gtctcgctga gggcaatcag ttcaaccagc
     5041 aactcatttc ttatacgccg gcactgacca aacaacagga ttaccttttg accaatatct
     5101 acgtctacaa cgcccaacca aggcttatta ccgatccact cgatcagcgc gcaggtgaag
     5161 tgggctttca atctgatgtc tatttctcct ttcctaaaga aagtacgctg ggtaaattgn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5341 nnnnnnnnnn nnnnnnnnnn nngccgctaa cttttcttat tgggcaggtc tcgaggctac
     5401 gttttatgac gaccaatcct atgatgtcga atttattggc tctggcgatc gctatttcag
     5461 agatattaat gctgaaataa agaaccgctg gaacaagaac ttaaacaccg ttttgaccta
     5521 tcaaaatgtc attgcggaca aaggggtcgt tttaggggga cccctgggca gtcaaggaga
     5581 catcaaagcc tcgattatcg tcgcagaagg aacctacaaa ttggggagcg gccgatcagt
     5641 acgtttagtg ggtcaacact tatcaaccga gcaagatcgt aaaaattggg ctggagcggt
     5701 catggaatac aacttcaatt ctaaattatc agtgtatggt gctgatgcct ataattatgg
     5761 tggagaaaca caggtgcact actacaattt tggtggaagt tatacccaag ggcgtgtgcg
     5821 ttttgccatg aattatggtc gccagcgcgg gggattaatt tgtgtgggcg gtgtgtgccg
     5881 ctttgttccg gagaacaatg gactcagcat gaatttaaat gtcacttttt aaatagaggc
     5941 aaatatctaa atgaatacat caatcttgca tgatgcataa attgaacaac gtnnaagccg
     6001 cgggcatttt ttatacttgg attcttagaa ttaaatcaga atatgatttc cgattaacgc
     6061 ttcacaattt taaaagtctt ttgcagacca gcagcgtttt gcaagaccgc cagatacatg
     6121 gaggctgaca aatgcgtcag gtcaatagac tgatctcctt gtgacaccgt atattgaccg
     6181 acattttttc cttgaagatc ataaagatca agaaccatgc gctcttgtgc acgcaatttc
     6241 aactgagtgc tcactaaatt ctgcaataca ctcacttgag gtgcgttttc cccaacagca
     6301 agatttggat cataacgata ggttattgtc aaatcctctc ctattggatc accattagca
     6361 tctacttgat aaaatctaaa gacatagtca attggattcc cgccaccatc gacaaaatta
     6421 gcaatgtgat ctcccgggaa accttgattt tcgcccggtt gaatcgtcac aacctcagaa
     6481 cctggaggat aagaaccgcc caagactaaa tctgtgtaac acaaaccaaa gcacaactgc
     6541 acaccagatc catccccatt gaccgcactg acaaattcaa tcttagtata aatttcttca
     6601 gtagcagact cattgtttac ccaaaaaggc agttcagcaa tccccaaacc gtaaataccg
     6661 aaggtccagg tcgaaccatc taaaatcggg tctccatcat gcgtctcaac ggtaaattga
     6721 gcaaatgcca cagcagtgca aagagataaa ataaaagtaa aaagtgtttt cataaatagt
     6781 gttttacaga atgtttaaat ccaattcgtt gatcgacaca acggatatgg attgcaagat
     6841 aaaaattgtc taaaacaatc ttcgaatttt aaacaaattt ctctttacat ttatttaact
     6901 tgtgaaatac aattaaatag ccgtgagaag gttacgtatc ttaaaagttc aaaatatgtt
     6961 caaaaaaaat taaagcattt tgatcttttt tagttagttt tagtcacaac aaaatttcaa
     7021 cactccatga aacactttta caacacactt gtccttattt tcgggatgac ctttaccatg
     7081 attgcacaga caatcgtttc gaccaatcca gaaaataaaa atgtcatttt agaagaattt
     7141 acgggaatct actgtactta ttgtcctgat ggacatgcca ttgcacaggc cataaaagat
     7201 gcgaacccga atgatgttta tttgatcaat attcatacgg gtagtttcgc aaatccttct
     7261 ggtaatgatc cggattatag aacaccttac ggcactgcga ttgccaacca atccaattta
     7321 accggttatc ctgctggaac agtgaatcgc cactattttc cgggatcagc acaaaatgga
     7381 ggaacaggca ctgcgatgag ccgtggtgcg tggaccgctc gcagcaatca aacgcttggt
     7441 gaggcctctt acatgaatat ggctgtcgag gcagaaattg acattcaaac caatgaaatg
     7501 acagtccatg tagaagcgta ttacacggga agcagtccag aatcaacaaa taaactgaat
     7561 gttgctttac ttcaaaacaa taccttagga ccacaaacgg gtggaggagc tggcaatcag
     7621 tacaaccaca tgcaccgtct gatcgatatg attacgggac aatggggtga agatgtttct
     7681 ccgacaactg ccggttcgtt catcgataga acatatactt accaaatccc tgccgatcac
     7741 aatggaattc ctattgaaat cctagattta gaaattgtcg tattcatgac cgaaaccaca
     7801 caagaggtga ttagcggtag tggaacaacg cctctttaca ctggaattac agcacaaaat
     7861 gacgcagcgg tagaatcaat cccttcgatt ccagaccaat gtggatttct tgagccggtt
     7921 tttgaactga aaaactacgg taacgatcca cttacgtctg ttgatgtaag ttattcagtt
     7981 aactcaggag ccgttcagac ctatacttgg accgggaata ttcctgcgct ttattctgag
     8041 ctagtgacct taccgggggt aacctttgac gttcaagcga caaacacggt agagataagt
     8101 gtagaagctg atgaagaaaa taacaacaac acactttctg aaacctttaa tcaattaacg
     8161 ttcgagaaca ccaatacggt tagcctaatt ctcaataccg acgctcaagg tcaagaatgt
     8221 acttgggaaa ttctaaatgg ctcaggcgag gtcgttgctg agggcggccc ttacagcggt
     8281 gtcactaaca ttacacaaac cttcaaccta ccaggtgact gctataaatt caacttgaga
     8341 gattcagggg gtaatggtgg agaatctgtt gttctttatg acagtgacaa caacgtgatc
     8401 tttaactcaa gtgggaatta tggcgcaggc gcaggcgtgc ctttccaaac agaatttatt
     8461 ctagatgctg gagatcagtt tttgagtcag ttgagtattt acccaaatcc gaccaacagt
     8521 cgtgttactc ttttaaacgc tcaaaacacc aaattaaccg tttatgatgt tcttggaaaa
     8581 gtgctgatga cccaatccat taataattca aatgagatta ttgacctgag tcaattactt
     8641 accggcacct attttgttgc cctagatcaa aacggacaac gacgtgttga aaaagtcgtg
     8701 aaactataac tatttaataa tcaattgatt attaaaagaa tgaatacaaa atcattttta
     8761 ttctttttac tttgggcccc cttcttaggg gctcaaacca ttgtgagcac tgctccagag
     8821 aacgccaaag ttattttaga cgaatttacc ggaatttatt gtgtgtactg tcctcagggt
     8881 catgcgatcg cacaaggcat acaagataac aaccctggta atgtattttt aatcaatatc
     8941 catacgggaa gttttgccaa cccaagtggt aacgatcctg attttcgaac gcaatggggt
     9001 gcagcgattg cgaaccaatc acaactggtc ggttatcctg ctggcacggt taatcgtcat
     9061 tattttcctg gaacggcaca aaatggcggt acgggaacgg cgcaaagtcg tggaacttgg
     9121 gcggcaacga gtaacgaaaa ccttggttac gcctcttatc tcaatatggc aacagaagtg
     9181 agtgtcgatg tcagcacagg agaaatgact gtgttggtcg aagcctatta tactggatca
     9241 agcccagaac cttcaaactt tttaaatgta gccctactac aaaacaatac gttagggccg
     9301 caaacagggg ggaatgcagg aaatgattac aaccatatgc accgattggt tgatctaatc
     9361 acaggacaat ggggtgaaga aattacgcaa acctctgcgg gagatttcgt agaacggaca
     9421 tatacgtacc aaatcccagc agattttaac ggcattccgg tagaatatgc agatttagag
     9481 gtcgttgttt tcatgacaga aaatacccaa gagattatta gtggtaatgg ggcctaccct
     9541 acttttacag gtttagtgaa tcaaaatgac gtttcggtac gttttattga ggagatacca
     9601 gaacagtgtt atggagaaat cgccccaacc attaatattc aaaacgtagg tatcgacaca
     9661 ttaacttcag ttgaccttgt ttacaccatt aataacctta cctatgaata tacctggact
     9721 gggagtttgg cttcgctaca atcaacttct gtagaattac cgatgagtcc ttttgttttt
     9781 aacggaacaa atacagtcac ggtcactgct gcagacgacg acaataatag taacaacaca
     9841 caaaccataa cttttgctga tgctcaagaa tattcaggag accttacact aaccattacc
     9901 accgatggat ggggtagcga agtcacttgg gatgtaagag actacactgg cgctatggtc
     9961 gccaatggag ggccttatgg aaacaacagt acttacaatg agaccattag cttaccttct
    10021 gagagttgct acacctttaa catgtacgat tcttatggag acggactgct ttctggcggt
    10081 gtttctttag tggatgatca aggtaccgtt atctggcaat ccaatggaga ctatggctct
    10141 ggagcgagca aaacttttgg cttccaagtt attaccctcg gaacaaacga tgttcagacc
    10201 attggcgccg tgctttatcc aaatcctgct caaaacatcg taaatattgt cggggcggaa
    10261 caagcttcaa ttgccgttta tgacgtatta gggcgtaagg tatggagtca agttcaagca
    10321 aacaatcaag ttcaaatgga tgtgagtgcc cttggtgccg ggacgtactt tgtgcgttta
    10381 tccaagggga atcagaccca aacagaaaaa ttaattatcg cgagataatt ctataactat
    10441 catagacctt gaaattattc accctacccg tttggctcat cgcactcagt gcaatgggcc
    10501 aaactattgt tagtaccaat ccagaaaacg caaaagtaat ccttgaagag tttactggaa
    10561 tctattgcac ctattgtcca gaaggccatg caatagccga ggcaatacag gatcaaaatc
    10621 ctgatgatgt ctttatcatt aatatccacg cggggagttt tgcggcccct ttaccggggg
    10681 atcctgattt tagaaccccc tggggcactg ccctggttca gcaatcagaa ctcatcggtt
    10741 atccggcggg aacagtgaat cgattgtttt ttcaaggatt gtcccaaaat gggtcgacaa
    10801 gccgcgccat gaatcgagaa aactgggaaa gcgcaacaaa tcaaacactg gcgaacactt
    10861 cttatgttaa tcttggagtg gaatcaaccc taaatgcttc tacaggtgaa ttagaaatcc
    10921 atgttgaggc ttattatacc ggttcaagtc ccgtaggcca aaattatttg aatgtcgcct
    10981 tgttacaaaa caataccatt ggcccgcaaa ctggaggagg acagggtaat aattatgtcc
    11041 acaaacatcg tttggtagat ttaatcaccg gtcaatttgg tgaagaaatc accaccacca
    11101 gcgctggaac gtttatcgat agaacctata attatagtgt tccacccgat tataatggcg
    11161 tcccaactca gttggccgat cttgagctcg ttgtgttcat ggctgaaagc agtcaagaca
    11221 ttataagcgg taatgcaagc actccagatt tagtcgtaag ttttcaaaac gatttatctg
    11281 ttggggcgat atcaccaata ggcgaagtat gctacggtgt tttagggcca gaaattttat
    11341 tgcaaaatgt cggaacacaa acggctacca ctgcccaaat cacctacgaa attaatggag
    11401 cttcctataa ttatacttgg aatggcaacc tgccttcttt gggtcagact tttgtggctt
    11461 taccagcaca agaatttccc tttaatggga gtaatgtagt cgcggtaacc attggtaacg
    11521 atgattttaa tggtaacaat gatcgagaaa ttgaattttt tgaagctgaa gaatatcaag
    11581 gcaatctgaa tcttaccatt gataccgatg gctttggtaa tgaatttact tgggaaatgc
    11641 tagattacac cggtacggta tatgccagtg gaggcccgta tggatctttt gaaacgatta
    11701 cacaggtcat ttccatgagc gaagaaagtt gctacacgtt taagatttat gacagctccg
    11761 gtaatggagg aactgaagta ctcttacgcg atgcttccgg gaatcaaata ttacaaactg
    11821 atggtgaatt tggagcgact ctagaacgta cctttggcta caaagtggaa acgattcttg
    11881 gacaagagga tccctccttt gcccaagagg tgagcatttg gccaaatcca acacgcggaa
    11941 acatcgaact ctcagggctc cataacaaca cgctttttgt gctctccaat atcttaggac
    12001 agaaaataat gactggttcc ctccaatccg gacaaagcgc cattgacgta acggggatga
    12061 cccccggggt ttatttactt caattgactg aaaaccagcg ctattgcgtg aaaaaaatta
    12121 ttattgagta gtttaaacat taatcttaaa gatataagcg ttaatcctac agaaaaaaat
    12181 cccggccttc ggccgggatt ttttattcct aaaattattt gaaagaacaa acgcggggcg
    12241 caaatgggac ttaacccagt ggtacatgaa ccaccacctt ggtctcaaaa aactgctcct
    12301 taaaataatc cgataaattg taaatcatac attttcgata acggcgtaac tcgtcggtga
    12361 gatccccgcc ctttagggca agtattccgt tgggtatact gtgggtagaa tccttcttta
    12421 tcttttgatg cgtccaggcc actagacctt ccatttttgt aactgctcta gtg
//
LOCUS       DPUP01000233            9156 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2506,
            whole genome shotgun sequence.
ACCESSION   DPUP01000233 DPUP01000000
VERSION     DPUP01000233.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9156)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9156)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9156
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>463)
                     /locus_tag="DHV98_09050"
     CDS             complement(<1..>463)
                     /locus_tag="DHV98_09050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCK06473.1"
                     /translation="LDAGALESIQNQNIRTEKLAIKDVKLRTFITEDSSRDDLVAHVY
                     DVTYGVVNPEDNVVIIDDSIVRGTTLKKSILKILDRLNPKKIIVVSSAPQIRYPDCYG
                     IDMARLEQLVAFNAAIALHQERGNTGIVEEIYANCKAALAQAALGHDIENHV"
     assembly_gap    464..590
                     /estimated_length=127
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<591..1763)
                     /locus_tag="DHV98_09055"
     CDS             complement(<591..1763)
                     /locus_tag="DHV98_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019386862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HCK06474.1"
                     /translation="MSDPLKHECGIALVRLKKPLSFYKEKYGSSFYGINKMYLMMEKQ
                     HNRGQDGAGLAGIKLDVSPGERYISRIRSNAAQPIQDIFGQINARINSEFAKDAALSD
                     NIEEQKKRIPYLSELLLGHVRYGTFGDNSIEAVHPFLRQNNWMHRNLIIAGNFNMTNT
                     NELFQNLIELGMHPKEKADTITVMEKIGHFLDDAVRKLYKQAKAQGLNKKEASPYIVE
                     HLSIEKILKKAAKQWDGGYAMAGLLGHGDAFVLRDPAGIRPAYYYEDDEVVVVASERP
                     VIQTVFNVAFEQIHELTPGHALIIRKSGQTNLSQIHQPLPRKSCSFERIYFSRGSDAE
                     IYRERKMLGRLVMPKVLKSIGHDINNTVFSFIPNTAETAFYGMMEAANDELNKQKTQ"
     gene            complement(1778..2701)
                     /locus_tag="DHV98_09060"
     CDS             complement(1778..2701)
                     /locus_tag="DHV98_09060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007095946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HCK06475.1"
                     /translation="MSQLVIVGTVAFDAIETPFGKTDKILGGAATYIGLSAAQYHAKG
                     ALVSVVGGDFPAQYLELLESRGMDTSGIEIVKDGKTFFWAGKYHNDMNTRDTLVTELN
                     VLADFNPVVPENYRDSEVVLLGNLHPEVQSSVLDQMTAPKLVILDTMNFWMEHTWDAL
                     VKVMKRVDVISINDEEARELTGEYSLVRAAQKIQEMGPKYVIIKKGEHGALIFHKDEV
                     FFAPALPLEEVFDPTGAGDTFAGGFAGFLAQTQDYSFDNMKKAIVHGSALASFCVEKF
                     GTERLQNLTREELYRRLQQFKQLTQFDIELH"
     gene            3190..4086
                     /locus_tag="DHV98_09065"
     CDS             3190..4086
                     /locus_tag="DHV98_09065"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06476.1"
                     /translation="MRKYYFSLRSNLQLLAFASLFFTFSQLNAQVGIGTTNPQAMLDV
                     VASDPANPTAKDGFLMPRVTSLSQDFQEPPAVGTMVFYNGALTGNMKHTVYYYADDSN
                     WRNLSGEIANSSDEPELFDYDEDNGGVIFWIDPNDAYHYKIVALRQFAEDYGSNNNNS
                     DNGGRCDQHFCAFGANGFEATKSWIDEHSSIVYERYDNYAPSMAYYYDGDNDPGTEPL
                     GWYLPTMMEMQLILNNRSSINNAMNGETHDDIQDQEKYWTIMQGESDDKSFVLEFEGD
                     YKISEENKKDPREFRIVREIGG"
     gene            4120..5400
                     /locus_tag="DHV98_09070"
     CDS             4120..5400
                     /locus_tag="DHV98_09070"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06477.1"
                     /translation="MDMLKPLHNSKISLFKTFFILLTLSFQNGIAQIGIGLPAGQDPQ
                     ATLDVGFDETVAPGFLMPRVNNLPEATNESPITEGMLVYYSGDDSSLVNSYYVYIDGE
                     WKTLAETAGIILPGVGGGGNGVVTIHEGYFENGNDGWLDFNDSNRVQSGYSCEQNYSM
                     QIWNSNGESKIELRDQDLSSYNAVSIEFEYRTNSNWESEDYFSLKFNNQELGRWYSSD
                     QNCSSVTLFIDSGNYSFGSADDFKFQGEMSWDGESVFIDAVVIKGYTQPTATVCETSF
                     EDDFGCWEPDNNSTVWRGNWYPNTGQGHLYFQSDDLNNSSNFDNSYISTAAPIDASEF
                     SAGMIQMWYSGNGNTEDENDNGTDYLRLQYYNGSGWSNFPEGSYGVQPWSYEFLSYSI
                     PADYLTNNLRIRIKFDATRPDERLFVDDTAIIFY"
     gene            complement(5401..6126)
                     /locus_tag="DHV98_09075"
     CDS             complement(5401..6126)
                     /locus_tag="DHV98_09075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010520290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H"
                     /protein_id="HCK06478.1"
                     /translation="MANKPKFYAVWQGNPPGLYTSWADCQKAINGISGAQYKSYPTRE
                     QAQRALDGSYKAAVEAGKKQSARVQGGSYGQNGARKGIMSRGNGRSGRSNSELSPAEL
                     KRIGEPNLYSIAVDAASSGNPGRMEYQGVDTQTGKLLFHQGPFAQGTNNVGEFLALVH
                     GLAYLKKEGSDRAIYSDSRIAIGWVRKKKCGTKLAPHSSNKILFELIARAESWLRSNT
                     YSTSILKWETKAWGEIPADFGRK"
     gene            complement(6116..6709)
                     /locus_tag="DHV98_09080"
     CDS             complement(6116..6709)
                     /locus_tag="DHV98_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002674292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HCK06479.1"
                     /translation="MPKGPKKIVVFASGSGSNAEQIMTQAKSVTWAEVSAIYCNNPEA
                     GVLQRAERMGVPVRLFGNGQLNDPDFVLSWLLQDAPDLIVLAGFLRKIPEFILGNFPH
                     RIVNIHPALLPEFGGKGMYGLHVHRAVKASGAQKTGITIHYVNAAYDEGAIIFQADTP
                     VTSTDQPEDIARKVQGLEHKHFATVVLNLLNPGTHGQ"
     gene            6966..7199
                     /locus_tag="DHV98_09085"
     CDS             6966..7199
                     /locus_tag="DHV98_09085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HCK06480.1"
                     /translation="MSDIASRVKAIIVDKLGVDENEVVTEASFTNDLGADSLDTVELI
                     MEFEKEFDIQIPDDQAENIATVGQAISYIENAK"
     gene            7213..8466
                     /gene="fabF"
                     /locus_tag="DHV98_09090"
     CDS             7213..8466
                     /gene="fabF"
                     /locus_tag="DHV98_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     II"
                     /protein_id="HCK06481.1"
                     /translation="MELKRVVVTGLGALTPIGNNLSEYWEGLKNGKSGSAPITYFDTE
                     RFKTKFACELKNFNALDHFDRKEARKLDRFAQYALVASDEAIADANFAEDSLDKFRVG
                     VIWGAGIGGLETFQDEMISYGEGDGTPRFNPFFIPKMIADIAPGNISIKHGFMGPNYA
                     TVSACASSANAIIDALNYIRLGHCDVIVTGGSEAAVAIAGMGGFNAMHALSTLNETPE
                     TASRPFDATRDGFVLGEGAGALILEEYEHAKARGAKIYAEVVGGGLSSDAYHMTAPHP
                     EGLGVERVMLNCLRDAGISPEQVDAINTHGTSTPLGDVAELKAIVKVFGDHAPKININ
                     STKSMTGHLLGAAGALEAIASILAMNHSLVPPTINHTTVDENIDPRLNLTLNKAQERE
                     ITYAMSNTFGFGGHNACVLLKKYTE"
     gene            8473..>9156
                     /gene="rnc"
                     /locus_tag="DHV98_09095"
     CDS             8473..>9156
                     /gene="rnc"
                     /locus_tag="DHV98_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HCK06482.1"
                     /translation="MVSIKNIFSSRSQEEEEFFHAVKKILGFSPHNLNWYHEAFTHRS
                     TQSVNSEGQPQNYERLEFVGDAMLGSIIAAYLFTMVPEGNEGYLTKMRSKVVSREHLN
                     ELGRDLDLISLVKTTVPIDQFGENIHGNVFEALVGAIYLDRGYAWVQKFIQNRVIDPY
                     VDIEKLEGKVISYKSLVIEWCQKHKKQFRFQTYEDNGVEVMKHFAVKLYIDKEVVAKA
                     RSTSKKKAEE"
BASE COUNT         2484 a         1917 c         2086 g         2542 t
ORIGIN      
        1 acgtgatttt caatgtcatg acccagggcg gcttgggcca atgccgcttt gcaattggcg
       61 taaatttcct ccacaatccc cgtattgccc cgttcttggt gcaaggctat ggctgcatta
      121 aaggcaacca gttgttccaa gcgggccatg tcgatcccat aacaatctgg gtaacgaatt
      181 tggggcgccg aagaaaccac aataattttc tttggattga gtcggtccag aatttttagg
      241 atgctctttt tcagggtcgt cccgcgcacg atactatcgt caatgatcac cacattatcc
      301 tcagggttca ccacgccgta agtcacgtca tagacgtggg ccaccaagtc gtctcggctg
      361 ctgtcttcag tgataaaagt gcggagtttc acgtccttaa tggcgagttt ttcggtgcga
      421 atgttttgat tttggatgga ctcaagagcg ccggcgtcaa gacnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ttgtgttttc
      601 tgcttgttga gttcgtcatt tgccgcttcc atcattccat aaaatgcggt ttctgcggta
      661 ttggggataa acgaaaaaac tgtgttattg atatcgtgac cgatgctttt aaggaccttt
      721 ggcatcacca aacggccaag cattttgcgc tcgcgataaa tctcagcatc acttcctctt
      781 gaaaaatata tgcgttcaaa agaacaagat tttcttggca gcggttgatg tatttgagat
      841 aaattggttt ggcctgattt tcggatgatc aatgcatgac ctggggtcag ctcatggatt
      901 tgctcaaaag cgacattaaa tacagtctga atcacagggc gctcactggc cacgaccacc
      961 acctcgtcat cttcgtaata ataggctgga cggatgccag cgggatcccg caggacaaaa
     1021 gcatcaccat gaccgagtag ccccgccatg gcgtagccac catcccattg tttcgctgct
     1081 tttttgagta ttttttcgat actcagatgt tctacaatat agggagaggc ttcttttttg
     1141 ttgaggcctt gtgctttggc ttgtttataa agcttgcgta ccgcatcgtc tagaaaatgc
     1201 ccaatttttt ccatcacggt gatcgtatcg gctttttcct ttgggtgcat gcctagttca
     1261 atgagatttt gaaaaagctc attggtattg gtcatgttaa aattaccggc aatgatcagg
     1321 ttgcgatgca tccagttatt ttgacgcaaa aacggatgaa cagcttctat gctattgtca
     1381 ccaaaagtgc cataacgcac atgacctaag agcaactcac tcagataagg gatgcgcttt
     1441 ttctgctctt ctatgttgtc actaagggcc gcgtctttgg caaattcgct attgattcgg
     1501 gcgttgattt gaccaaaaat atcttgtatg ggttgtgccg cgtttgagcg aatacgactg
     1561 atataacgtt cgccagggga gacatcaagt ttaatacccg ccaaaccggc gccatcttgg
     1621 ccgcggttgt gctgcttctc catcatcaaa tacattttgt tgatcccgta aaacgacgat
     1681 ccgtattttt ccttataaaa gctcaagggc ttttttaatc ggaccagcgc aatgccgcac
     1741 tcgtgtttta atggatcact catagtatca ggagaactta atggagttca atatcaaatt
     1801 gggtcagttg tttaaattgt tgaagacggc ggtacagttc ttctcgagtt aggttttgta
     1861 ggcgctcggt gccaaatttc tcaacacaaa acgaggccaa agctgagccg tggacaatcg
     1921 cttttttcat attgtcaaag ctgtaatctt gggtttgggc taaaaatcct gcaaagcctc
     1981 cggcaaaagt atctccggcg cctgttgggt caaaaacttc ttccagtggc aaagccgggg
     2041 caaaaaacac ttcatcttta tgaaatatca gtgcgccatg ctctcctttt ttgatgatga
     2101 catatttagg gcccatttct tgaattttct gtgcggcgcg caccaaagaa tattcgccag
     2161 tcagttcacg ggcctcttca tcgttgatgg aaatgacatc aacacgcttc ataaccttta
     2221 ccaaggcgtc ccaagtgtgt tccatccaaa aattcatggt gtctaggatc actaatttgg
     2281 gtgccgtcat ttgatctaag acagacgatt gcacctcggg gtgcaaattc cccaagagga
     2341 caacttctga atcgcgatag ttttcaggga ccacagggtt aaaatccgcg agtacgttaa
     2401 gctcagtgac caaagtatcg cgggtattca tatcgttatg atattttccg gcccaaaaaa
     2461 atgttttacc gtctttaacg atctcaatcc ctgaagtatc cataccgcga ctttcaagaa
     2521 gttcgaggta ctgcgcggga aaatcgcctc cgactaccga gactagggcg cccttagcgt
     2581 ggtattgtgc tgctgagagc ccaatataag tagcggcacc cccgagaatt ttatcggttt
     2641 taccaaaagg tgtttcaata gcatcaaagg ctacagtgcc cacgattacg agttgactca
     2701 ttgggtggtt ttaagttggg tcaaaaataa tcaaatctgc cggatatccc ggattgaatt
     2761 atttgaagat tttaggattg aatttaaaaa ggccgatgag cggcccaaaa aaaagaagct
     2821 ccgacttttt tacaaccgat taatattatt ttgattagcg ctaaaggtcc tgagtatttc
     2881 aggttgtcga ttaatgacgt tttatgcaca agtactcgag cagctggacg tgctgtaata
     2941 ttattaaata gtgtattgag aaggcttgtt tttattggga ttgatgaatt atttgagtga
     3001 tttaggaact ggaactgtgc agcgtcatgg cgatttttga aggaacgtga aggaaaattc
     3061 ctgcacttca ccgataaaat tagtaaacac aacgaataaa tcgccaccta agatacgggc
     3121 ataaaagact cattatatat ctgccctgtt caaccccaaa tttcgaacaa acgtaaatac
     3181 ttatatacca tgagaaaata ttatttttct ttaagatcga acctacaact attggctttc
     3241 gcaagcctat ttttcacatt tagtcaatta aacgctcaag ttggtatcgg gacgacaaat
     3301 cctcaagcga tgcttgatgt tgttgcctct gatccggcaa atccgaccgc caaggatgga
     3361 ttcttgatgc cacgtgtgac ttcactcagc caagattttc aggaaccacc tgcggtaggc
     3421 acgatggttt tctataacgg agcgctgacg ggaaatatga agcataccgt ttattactat
     3481 gctgatgatt ccaattggag aaatctgtca ggtgaaatcg ccaactcctc ggatgagcct
     3541 gagctattcg attatgatga agacaatgga ggcgttatat tttggataga tcccaatgac
     3601 gcgtatcact ataaaattgt tgctctaagg cagtttgctg aagattatgg ttctaacaac
     3661 aataattcgg acaatggtgg ccgctgtgat cagcattttt gtgcttttgg agcgaatggt
     3721 tttgaagcca caaaatcttg gattgatgag catagttcaa ttgtgtacga gcgctatgat
     3781 aattacgcac caagtatggc atattattat gatggagata atgatcctgg aaccgaacca
     3841 ctaggttggt atcttcccac gatgatggaa atgcaactta ttctaaacaa taggtcgtcg
     3901 attaacaacg ccatgaacgg agaaacacat gacgacatac aagaccagga aaaatactgg
     3961 accataatgc aaggtgaatc tgatgacaag tcatttgtat tagaattcga aggtgattat
     4021 aaaattagcg aggagaataa aaaggaccca agagaattcc gaattgtacg agaaataggc
     4081 gggtagcaac atgccctgag ttaagttaac ttaaataaaa tggatatgct aaagccccta
     4141 cataacagta aaatctccct ttttaaaact tttttcatac ttctgacttt atcatttcaa
     4201 aatggaattg cccagattgg aattggccta cctgccggtc aagaccctca agcaacctta
     4261 gatgttggat ttgatgaaac ggttgctcct ggatttctta tgccccgggt taataatctt
     4321 ccagaggcaa ctaacgaaag cccaattaca gaaggtatgc tggtgtatta ctcaggagac
     4381 gattcttcat tagtaaatag ttattacgta tacatcgacg gtgaatggaa gacattagcg
     4441 gaaaccgctg ggattattct ccccggtgtg ggtggaggag gaaatggtgt agtcacaatt
     4501 catgaaggct atttcgaaaa cggaaatgat ggatggctag attttaatga ctccaatcga
     4561 gttcaaagcg gatattcatg tgaacagaat tattccatgc aaatctggaa ttcaaatgga
     4621 gaatcaaaaa tcgagttgag ggatcaagac ttgagttctt acaacgccgt ttcaattgaa
     4681 tttgaatacc gaacaaattc taattgggag tctgaggatt attttagttt gaaatttaat
     4741 aatcaagaat tgggtcgctg gtatagttca gatcaaaatt gtagctccgt tacactattt
     4801 attgacagcg gtaattattc ttttggaagt gcagatgatt ttaaattcca gggggaaatg
     4861 agttgggacg gagaatctgt tttcattgat gcagttgtga taaagggata cacgcagcct
     4921 accgctacag tttgcgaaac ttcatttgaa gatgattttg gatgttggga gccggacaat
     4981 aattcaacgg tttggagagg taattggtat ccaaatactg gtcaaggtca tttatacttt
     5041 caaagcgatg atcttaacaa tagttcaaac tttgacaact cttatatttc caccgcggca
     5101 ccaatcgatg caagcgagtt ctctgcaggc atgatacaaa tgtggtattc aggcaatggg
     5161 aatactgaag acgaaaatga caatggcacg gactatttga ggcttcaata ttacaatggt
     5221 tctggatggt ctaatttccc tgaaggctca tatggtgtcc aaccatggtc atatgaattt
     5281 ttaagctact ctattcctgc ggactatcta acaaataatt tgagaattag aataaagttt
     5341 gacgcaacaa ggccggatga acgtttattt gtagacgata ccgcaatcat attttattaa
     5401 tcacttccgc ccaaaatctg cggggatttc gccccaggct ttggtttccc atttgagaat
     5461 ggaagtggaa taagtgtttg atcgcagcca agattcggct cgggcgatga gctcaaataa
     5521 aattttatta gaagaatgtg gcgccagttt ggtgccacat ttttttttgc gcacccagcc
     5581 tatggcgatg cggctatcgc tgtaaatggc gcgatcgcta ccctcttttt tgagataagc
     5641 caggccatgg actaaggcca aaaactcccc gacattattg gtgccttggg cgaatggccc
     5701 ttgatgaaat aataatttgc cggtctgagt gtcgacaccc tggtattcca tgcgccccgg
     5761 attccccgaa gaggcggcat ctaccgcaat gctgtataaa tttggctccc cgatacgttt
     5821 gagttctgcg ggacttaatt cagagttact gcgaccactc cggccattgc cacgactcat
     5881 aatgcccttt cgggcgccat tttgcccgta actgcctccc tgaacgcggg cactttgttt
     5941 tttaccggcc tcaacggccg ctttgtagct tccgtctaaa gcacgttgag cctgctcacg
     6001 cgttgggtac gacttatact gggccccaga aataccattg atcgcctttt gacagtccgc
     6061 ccaactcgtg taaagcccag gggggttacc ctgccatacc gcataaaatt tgggtttatt
     6121 ggccatgggt cccagggttt agcagattca ggaccacagt ggcaaaatgc ttgtgttcta
     6181 acccttgaac ttttcgggca atgtcttcag gctggtctgt ggatgtgacc ggggtgtctg
     6241 cctgaaaaat tatagcgcct tcgtcatagg ccgcattgac atagtgaatg gtaatgcctg
     6301 ttttttgtgc gccactcgct ttaaccgcac ggtgcacgtg cagaccatac atgccctttc
     6361 ccccaaactc gggcaacagt gccggatgga tattcactat cctgtgggga aaattaccca
     6421 agataaactc aggtattttt ctcagaaaac ccgccagcac gatgaggtct ggggcatctt
     6481 gcagcagcca gcttagaaca aagtcaggat cgtttaactg tccgtttcca aaaagtctta
     6541 cgggcacccc catgcgctcg gcacgctgaa ggacgccagc ttctgggttg ttgcaataaa
     6601 tagcgctcac ctcggcccac gtcacgcttt tggcttgggt catgatttgc tcggcgtttg
     6661 atccactacc cgaagcaaag actacgattt tttttggccc ctttggcatg tgtatgcttt
     6721 cagacaaaaa taatggaaac ttaatttatg gaccgtgtaa agcaaaaata atgaccgttc
     6781 tttgctccac ttgatggccc atgggccgtt aacgacaaat caaaccaagg ccccgagggt
     6841 actaagggtc tccctgctcg gttttaattt atgcacaagg ggggtacatt ttgggcctaa
     6901 aaccttgttt taaagtaaaa tgttttattt ttgccccttg taaaccaatc taaattttaa
     6961 caattatgtc agacattgca tcaagagtaa aagcaattat cgtagacaaa ctaggtgttg
     7021 acgaaaatga agttgtaact gaagcgagct tcactaacga cttaggtgcc gattcattag
     7081 atacggtaga attgatcatg gaattcgaaa aagaattcga tatccaaatt ccagacgatc
     7141 aagctgaaaa cattgcgact gtaggtcaag cgatttccta catcgaaaac gcaaaataaa
     7201 tctcattcct ctatggaatt aaagcgagta gttgttacag gacttggtgc actgaccccc
     7261 atcggaaata atctttctga atattgggaa ggccttaaaa atgggaaaag tgggagcgcc
     7321 ccgattacgt atttcgatac ggaacggttc aaaacaaaat tcgcttgtga gctcaaaaat
     7381 ttcaacgcac tcgatcattt tgatcgcaaa gaagcccgta aactcgatcg cttcgctcaa
     7441 tatgccttag tggcgtctga cgaggcaatc gccgatgcaa attttgccga agatagcttg
     7501 gacaaatttc gtgttggggt gatttggggc gctggaattg ggggcttaga aacattccaa
     7561 gatgaaatga tctcttatgg tgaaggggat ggaacgccac gtttcaaccc ctttttcatt
     7621 cctaaaatga ttgccgatat tgctcctggc aatatttcaa tcaaacatgg ctttatgggc
     7681 ccgaactatg cgacggtctc cgcctgcgct tcttcagcca atgccattat cgatgcccta
     7741 aactacatca ggctaggtca ttgtgatgtc attgtcacgg gcggaagtga agcagcagta
     7801 gccattgctg gtatgggcgg ttttaatgcc atgcatgccc tttctacact taacgaaacg
     7861 ccagagaccg cgtcgcgtcc gtttgatgcc acgcgtgatg gatttgtgct gggtgaaggt
     7921 gcgggggcac tgattcttga agaatatgag cacgcaaaag cgcgtggtgc aaagatttat
     7981 gccgaagtcg tcggtggtgg tttgtccagt gatgcttatc acatgacggc accccatcct
     8041 gagggactcg gtgtagagcg cgtgatgctc aactgtctgc gtgatgcggg gattagtcct
     8101 gagcaagtag acgccattaa tacccacgga acatcaaccc ctctgggtga tgttgcggag
     8161 ctcaaggcga ttgtcaaagt ttttggcgat catgcgccca agatcaatat taattctaca
     8221 aagtcgatga cgggtcacct gctcggcgcc gccggggctc tagaagcgat tgcttcgatt
     8281 ttggccatga accatagttt ggttcccccg acaatcaatc acactacggt ggatgaaaac
     8341 attgatccac gcctgaattt aaccctcaac aaggctcaag aacgcgagat tacttacgcg
     8401 atgagcaata cctttggttt tggtggtcac aatgcttgtg tgcttttaaa aaagtatact
     8461 gagtagtcat ttatggtgtc cataaaaaac atattttcct ctcgttcgca agaagaggaa
     8521 gagttttttc atgccgtcaa aaaaatactc gggttcagtc cacataatct taattggtat
     8581 cacgaagcgt ttacccatcg ctccacccag tccgtaaaca gtgaaggtca gccccaaaat
     8641 tacgagcgtc ttgaatttgt gggagacgcc atgcttggct caatcattgc ggcgtattta
     8701 tttacaatgg ttcctgaggg caatgaaggc tatttgacaa aaatgcgctc taaggtggtc
     8761 agtcgagagc acctaaatga actaggaagg gatctggact taatttcttt ggtcaaaacg
     8821 accgtgccta tcgatcagtt tggtgaaaat attcacggta atgtatttga ggcattggtc
     8881 ggagcgattt atctggatcg tggttacgct tgggttcaga aatttattca aaatcgggtg
     8941 attgatccgt atgtggatat cgagaaacta gaaggcaagg tgatcagcta taagagtttg
     9001 gtcatcgagt ggtgccaaaa gcacaaaaaa cagttcagat ttcaaaccta tgaagataat
     9061 ggggttgagg tcatgaagca cttcgccgta aagctctata ttgataagga agtggtggcc
     9121 aaggcaagaa gcacttccaa aaaaaaggct gaagag
//
LOCUS       DPUP01000234            8744 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_16081,
            whole genome shotgun sequence.
ACCESSION   DPUP01000234 DPUP01000000
VERSION     DPUP01000234.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 8744)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 8744)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8744
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1041)
                     /locus_tag="DHV98_09100"
     CDS             complement(<1..1041)
                     /locus_tag="DHV98_09100"
                     /inference="COORDINATES: protein motif:HMM:PF14322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RagB/SusD family nutrient uptake outer membrane
                     protein"
                     /protein_id="HCK06483.1"
                     /translation="MKRNMIKFMKPVLATAFLSLLTVSCTDLAIEESDSIIAEGATVF
                     EGVADVDASITNLYNDNYGQLGDQGNFFALNEVSTDETLVPTRGTDWGDNGIWRTLHA
                     HTWSPTHQYVLNTWNNLNQNVLRATQILDPLSAPNAEQEAQARFLRAFSMYFVLDLYG
                     VAPFRQPTDDSDVNPSVLSASEAYDFIVNDLETALPNLPMAGPGPSEEGHSRANRAAG
                     HFMLAKVILNSERYTGSQPNYQAVIDHVDAIAGEGYALQAGYFDIFKQDVPDSETIWY
                     AKAGVGNRIWNGLHYNQNSPDNSGGGWNGFTTLAEFYDSFEGGGEDNSAGAGQEERRG
                     WVPGASDADSQNL"
     gene            complement(1052..4165)
                     /locus_tag="DHV98_09105"
     CDS             complement(1052..4165)
                     /locus_tag="DHV98_09105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006990372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SusC/RagA family TonB-linked outer membrane
                     protein"
                     /protein_id="HCK06484.1"
                     /translation="MKNKLLTKLLLLPVVLLMGSTAFAQMTVSGTVSDANGPVPGVNV
                     VVQGTSNGAQTDFDGNYSISDVTNDATLVFSYIGYATQEVFVNGRSTVDVTLAEDAQA
                     LAEVVVIGYGTTTVKDATGSVIAVTAKDFNQGVITSPEQLIQGKTAGVQISQSNGEPG
                     AGIDIRIRGAASVRSNNNPLFVVDGIPLSGGNTSAETANTGIGSNSAKNPLAFINPND
                     IESISILKDASASAIYGSRGANGVVFITTKSGKGAKGSSWEYSSSMAVASVAKTFDLL
                     SAEKYLSRANDFGFNVEERDFGSNTNWQDFIFRTSTSTNNDIAYSNNYGSGNLRATFG
                     YSKNFGVVENTSLERITGRLNWNQRFLNDKLKIGVQSTLSRVNDEGAATAASAGFRGD
                     LLGAAYSANPTWPTSPDFDGTGGLFSPATMLDYYQNLANTNRMLVNVSAEYALTSDLS
                     ARVNIGIDESESTRIGVSSPNARNFGAGAFGNGRGILSDLNTSSELLEATLNYSKDFG
                     NSSLDILAGYSYQNFNRNGRTANAWGFFTENMNEMGDAIESTANAIEAKITGDYQQYG
                     FAGNTGGIFVNRLFPDPATDIITDLNNLAVKSIFVDTFDNTDELQSYFGRVNYSINDK
                     YLFTATVRADGSSRFGEDNQYGYFPSGAFAWKLHNEDFVGDAFSTLKLRLGAGITGNQ
                     EGLGYGNFTQRQRYAGGGPDDGGNINIPGIVDVSYPNPALKWEETMQYAAGLDFGFNN
                     DRFNGSLDVYRKETSDLLFNVLAAQPSVQPFLFLNLPDSKVVNQGLEVSLGYDLISSD
                     DLTWNATLNAAYNDNMVESLQGEFDAGTIRGQGLSLAFAQKLKAGEPLFSYFLREFEG
                     FDPATGQPVQTDVQDFVGKSALPNLTGGLSTSLSYKRWTASAYFSGQFGHYIYNNTAN
                     AFFTAGAFRGGRNVTSDVLTAGESFDAAADVSTRFLESGDFVRFQNATVSYKWPLSGD
                     EFFSSLVFSVTGQNLFVITDYSGLDPEVSSSPSGGDLLNGLPVFGIDYASYPRPRTFT
                     FGLNAKF"
     gene            4505..5527
                     /locus_tag="DHV98_09110"
     CDS             4505..5527
                     /locus_tag="DHV98_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014083131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HCK06485.1"
                     /translation="MKEVTLKQIAENLGISVTTVSKALKDYKDVSKQTKALVRAEAKA
                     LNYKPNVFAVNLRTKESKTVGLIIPEVVHHFFSSVINGIINEAEKFGYLVIILQSNES
                     EELERKQVDLLLSKRVDGIMMSLANTTVEVDHIASIKKANTPLVMFDKISKMIACSKV
                     VINDRQAAYDATKFLIDKGCKRIAHFRGALLPQNSIDRFLGYKKALEEHGLPFDPKLV
                     YICEKVDYDDGRAAAIQLLADGHKIDGLFAITDMAATGALTVFKENGINVPQDIALMG
                     FSNWFLSQAITPALSTVDQPGYKMGRKTFKLLRKEMNAKKQGIPFTPVTKTLKTKIVE
                     RDSTPK"
     gene            5566..7092
                     /locus_tag="DHV98_09115"
     CDS             5566..7092
                     /locus_tag="DHV98_09115"
                     /inference="COORDINATES: protein motif:HMM:PF00251.18"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 32"
                     /protein_id="HCK06486.1"
                     /translation="MRLLFGLFAVLIILPSGCINPLIKQVETNGTEYSERFRPQFHFS
                     PKSNWMNDPNGLIFENDRYHLFYQFYPDSTVWGPMHWGHATSEDLTHWTHQPIALYPD
                     SLGYIFSGSAVMDYKNSSGLGSENQPALVAIYTYHNMEYERSGRNDYQTQGIAFSLDH
                     GMTWEKYDGNPVIKNPGIKDFRDPKVFWHEPTQKWILILVAGDHARIYNSKNLIDWTF
                     LSDFGHNEGAHGGVWECPDLFPLTTDQGDQKWVLMISINPGGPQGGSATQYFVGDFDG
                     QKFTAAQKESKWLDFGRDNYAGVTYNDAPEDKRILMGWMSNWDYAQVTPTTNWRSAMT
                     LPRSLELKGSNSDYYLVQNPIIEPSIIARTVEFDVAQVTEGVVLPSSQFQMEFEVDLS
                     EKTVFELANEQDQFVFSIDPTLRQMMVDRRFSGKIEFSDKFAPGRQISAFIPENRAAK
                     VTIFSDASSIEIFVDQGRYVFTNQVFPEQPYSHLRIVSEGVKTDKIIFSELNSIWHEQ
                     "
     gene            7082..8434
                     /locus_tag="DHV98_09120"
     CDS             7082..8434
                     /locus_tag="DHV98_09120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019670661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HCK06487.1"
                     /translation="MNNKIFIFSITVALAGFLFGFDTVVISGANKPLQELWALSPFMH
                     GTFIMSMALWGTVLGSLMGGIPTQKMGRKKTLFWIGVLFFVSALGSAVVSDPYLFSFF
                     RFIGGVGVGVSSVAAPIYISEITSSDKRGQLGGLYQFCLVFGILVAFISNWALKGFDG
                     ANDWRWMLGVEAIPALAYTLMVLKVPHSPRWLVLQKGDEQEALSILTLIYQKVDEAKR
                     HLAEIKLDRQESSGQDRLFQKKYKKVLYLGFLIAFFNQLSGINFVLYYAPQILEQAGL
                     GGSDSLFNSIAIGIVNLIFTLIGVRLIDRLGRRQLIIIGSVGYILSLVMVGVCFQYAL
                     SSTLLLTFICLFVAAHAIGQGAVIWVFISEIFPNRVRSYGQSWGTGTHWVFAAIITMI
                     TPFFIDDSEGIFRDNLEVIYYFFAFMMVLQLLWALFKMPETKGISLEDLEKELVDHEA
                     "
     gene            8424..>8744
                     /locus_tag="DHV98_09125"
     CDS             8424..>8744
                     /locus_tag="DHV98_09125"
                     /inference="COORDINATES: protein motif:HMM:PF00294.22"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HCK06488.1"
                     /translation="MKLDSPEIICWGEILWDVFEDHSVIGGAPFNVAQRLHSLGVNTL
                     MVSTIGRDPLGESVLDYMRQKGLSTQSVSRHDHLATGRVNVILDEQGAARYTIEDPAA
                     WDHIG"
BASE COUNT         2522 a         1784 c         1894 g         2544 t
ORIGIN      
        1 taagttttga gagtcggcat ctgaggcacc aggcacccat ccacgacgct cttcttgacc
       61 agcaccggca gagttgtctt caccaccgcc ttcaaaactg tcataaaatt cagccaaggt
      121 ggtgaatcca ttccaaccac cccctgagtt atcaggagaa ttttggttgt agtgcaatcc
      181 attccaaata cggttaccta caccagcttt tgcataccaa atggtttctg aatcaggaac
      241 gtcttgcttg aagatatcaa aatatcctgc ttggagggca taaccttcac cagcaatagc
      301 gtctacatga tcaattactg cctgatagtt aggctgcgat ccagtgtaac gctcggagtt
      361 taagataact tttgctagca taaaatgtcc agccgcacga tttgctcttg agtgaccttc
      421 ttcagacggt ccaggacctg ccattggcaa gtttggtagt gctgtttcaa gatcatttac
      481 gatgaaatcg taagcttcag aagcagaaag tacagatgga ttaacatcag agtcgtcagt
      541 tggttgacgg aacggtgcaa cgccgtaaag atctaacaca aaatacatac taaaagcacg
      601 taggaaacga gcttgagcct cttgctcagc gttaggtgcg ctcaatggat ctaggatctg
      661 agtggcacgc aaaacgtttt ggttcaaatt gttccaagtg ttcaatacat attggtgtgt
      721 tggactccaa gtgtgcgcgt gaagcgttct ccagattcca ttatctcccc agtcggtacc
      781 acgagtaggg acaagggttt catctgtaga aacttcgttc aaggcaaaga aatttccttg
      841 atcaccaagt tgtccataat tgtcattgta taggttagta atcgatgcat ctacatcggc
      901 tacaccttcg aatactgtag ctccttcagc gatgatagaa tcagattctt caatcgctaa
      961 gtctgtacag gaaacggtca ataaagatag aaacgcagtt gctagaacag gcttcatgaa
     1021 ttttatcatg tttcttttca taatttattt tttaaaattt agcgttaagt ccaaaagtaa
     1081 atgttctcgg tcttgggtat gacgcgtagt caataccaaa tactggaaga ccattcaaca
     1141 agtctccacc tgaaggtgag ctgcttactt caggatccaa acctgaataa tctgtgatta
     1201 caaataagtt ttgtccggtc actgagaaca cgagtgatga gaagaactca tccccagaga
     1261 gtggccattt gtaacttact gtagcatttt ggaaacgaac gaaatctcca ctttctaaga
     1321 atcgcgtaga cacgtcagcg gcagcgtcaa acgactcacc agcggtcagt acatctgaag
     1381 ttacgttacg acctccacgg aaagcacctg cagtaaagaa ggcgttagcc gtgttgttgt
     1441 aaatatagtg cccaaattga cctgagaaat aagcggacgc cgtccatctc ttgtagctca
     1501 aagaagttga aagacccccc gttaggttcg gcaatgcgct cttcccaacg aagtcctgaa
     1561 cgtctgtttg tactggttgt ccagtcgcag gatcaaatcc ttcaaattca cgcaagaagt
     1621 aagagaacaa tggctctcct gcttttagtt tttgagcgaa ggctaaagaa agaccttgtc
     1681 cacggatggt accagcgtca aattctcctt gaagcgactc aaccatgttg tcgttgtaag
     1741 ctgcgtttaa ggtagcgttc caggttaaat catcactaga gataagatca taacctaaac
     1801 ttacttcaag accttggtta accactttag aatctggtaa gttcaagaac aagaatggtt
     1861 gtacagaagg ctgggctgca agtacgttaa ataacagatc tgaagtctct ttgcggtaaa
     1921 catctaagct accgttgaaa cgatcgttgt tgaaaccaaa gtcaagaccc gctgcgtatt
     1981 gcattgtttc ctcccactta agtgctgggt ttggataaga aacgtccaca ataccaggaa
     2041 tgttgatgtt tccaccgtcg tctggtccac caccagcgta acgctgtctt tgggtgaagt
     2101 taccgtatcc aagaccttct tggttacctg taataccggc acctaaacga agttttaaag
     2161 tagagaatgc atcccctaca aaatcttcgt tatgtaattt ccaagcgaaa gctcctgaag
     2221 ggaaataacc gtattggttg tcctcaccaa aacgtgaaga accgtccgca cgaactgttg
     2281 ctgtgaataa atatttatcg ttgatagaat agttcacacg accaaagtaa gattgcaatt
     2341 cgtccgtgtt gtcaaaagtg tcaacaaaga tcgattttac agccaggtta tttaggtcag
     2401 tgatgatatc agtcgcggga tcaggaaata agcgatttac gaaaattcca ccagtattcc
     2461 cagcaaaacc atactgctga tagtcaccag taatttttgc ttcaatagcg ttagcagtgc
     2521 tttcgatggc atcacccatt tcgttcatat tctctgtgaa gaatccccaa gcgttcgcgg
     2581 tacgaccgtt acggttgaag ttctgataag agtaaccggc caagatatca aggctagaat
     2641 taccaaagtc ttttgaataa tttaaagtag cttccaaaag ttcgctgctt gtattcaagt
     2701 cgcttaagat tccacgtcca ttaccaaaag cacccgcacc gaagttacgc gcgtttggcg
     2761 aagaaacacc aattctagtt gactcagatt catcaatacc aatattcact ctagcagaaa
     2821 gatctgacgt taaggcgtat tctgcagaaa cgttaactaa catacggttc gtgtttgcta
     2881 ggttttggta gtaatccaac atagtcgctg gagaaaaaag ccccccagtt ccatcaaaat
     2941 caggagaggt aggccaagtc ggattcgctg aataagctgc tccgagaaga tctcctcgga
     3001 aaccagcaga tgctgcagta gccgcacctt catcgttcac gcgagaaagt gtagactgaa
     3061 ccccaatttt caatttgtca tttaaaaatc tttgattcca gtttagacga cctgtaatac
     3121 gttctaaaga cgtattttct actacaccaa agttcttgct ataaccaaag gtggcacgca
     3181 agttacctga accatagttg ttcgagtaag caatatcatt gtttgtagaa gtcgaagttc
     3241 taaaaataaa gtcttgccag ttcgtgtttg atccgaaatc acgctcttca acattgaatc
     3301 caaaatcatt cgcacggctt aaatattttt cagcagacaa caaatcaaaa gtttttgcta
     3361 cagaggcaac cgccatgctt gaagaatatt cccatgaact tccttttgct cctttaccag
     3421 atttagtagt aatgaacaca accccgttag caccacgtga accgtaaata gcagaggcag
     3481 aggcatcttt aaggatactg atactttcaa tatcgttagg gttgataaag gctaatgggt
     3541 ttttggctga gttagatcca ataccagtgt ttgcagtctc tgcagaagta ttacctcctg
     3601 ataatggaat accatcaacc acgaataatg gattgttgtt agatcgaaca gaagcggctc
     3661 cacgaatacg gatatcgata cccgcacctg gctcaccatt gctctgagaa atttgaaccc
     3721 cggcagtttt accttggatc aattgctcag gagaggtgat gaccccttgg ttgaaatctt
     3781 ttgcagttac tgctattacg gaaccggttg catctttaac cgtggtggta ccataaccaa
     3841 taaccacaac ttcagccaaa gcttgagcgt cttcagctag agttacgtca actgttgagc
     3901 ggccatttac aaaaacctct tgggttgcat agccaatgta actgaatacc aaagtggcgt
     3961 cgtttgtgac atcacttata gaatagttac catcgaaatc agtttgtgct ccatttgaag
     4021 tgccctgcac cacaacattt actccaggaa caggtccatt tgcatcggaa actgttccac
     4081 taacagtcat ctgtgcaaat gcggtacttc ccatgagtag aaccacaggg agcaacaaaa
     4141 gtttagttag tagtttgttt ttcatataat tctcggtttt aggttaattt actattaatc
     4201 agtcgttttc aaatattaca aatacaaaaa gaagcattca aaccgttaag aatgcaacaa
     4261 attgcggtga aatatacaat ttttttataa catagatttt gttttttcct tagtaataag
     4321 tgccaaggcg tataaggaaa acctaattta aggaccaatt tccagctttt ttttgaaaaa
     4381 tgaagggatt gccatacaaa ttatcgattt tgaacacgaa atcgttttcg ttttcgattt
     4441 acttgaaata acttgcaatc attgaattga aaattataca tttcgcattt cagataaagc
     4501 gcaaatgaaa gaggttacct taaaacaaat agctgaaaat cttggaatct cagtaacgac
     4561 tgtatccaag gcgctaaaag attataaaga cgtcagtaaa cagaccaagg ccttagttcg
     4621 tgctgaagcc aaagcattaa attacaagcc aaacgtcttt gcggtaaacc tccgcacaaa
     4681 ggagtccaag acggttgggt taattatacc cgaagtggtg caccactttt tttcaagtgt
     4741 gattaatgga atcattaatg aggctgaaaa atttggttat ttagtgatta ttcttcaatc
     4801 caatgaatcc gaagagctcg aacgcaagca ggtagacctc cttttgagta agcgtgtcga
     4861 cggaattatg atgtctttag ccaataccac cgtagaggtc gatcatattg cctcaataaa
     4921 aaaagcaaat acgcctttgg tcatgtttga taagatttca aaaatgatcg cttgctcgaa
     4981 agtggttatt aacgatcgac aggctgcgta cgatgcaacc aaatttttaa ttgataaagg
     5041 gtgcaagcga attgctcact ttcgtggggc tttattgccg caaaatagca ttgatcgatt
     5101 tttgggttac aaaaaggcgc tcgaggagca cggtttgcct tttgacccca aattagttta
     5161 tatctgcgaa aaggtggatt atgatgatgg aagagcagcg gccattcaac tcttggctga
     5221 cggacataag atcgatggat tatttgccat tacagatatg gcagccactg gggctttgac
     5281 tgtctttaag gaaaatggaa ttaacgtacc tcaagatatt gcccttatgg gcttcagtaa
     5341 ttggttttta tctcaggcta taacacctgc gctcagtact gtggaccaac caggttataa
     5401 gatgggacgc aaaactttta aacttctgcg caaagaaatg aatgccaaaa aacaaggaat
     5461 tccttttacc cctgtgacga aaaccctcaa gacgaaaatc gttgaacgtg attcaacgcc
     5521 aaaataatct tacatttagc ctaaccaata tttcaacaat tccatatgcg tctgcttttt
     5581 ggcttgtttg ccgtccttat aatactgcct agcggctgta ttaatcccct gattaaacaa
     5641 gtcgaaacca atggcacgga atattcagag cgctttcggc cgcaatttca tttttctcca
     5701 aaatcaaatt ggatgaacga tccaaatggg ttgatttttg aaaacgaccg ttatcattta
     5761 ttttatcagt tttacccgga cagcacggta tggggcccta tgcattgggg acacgcaacg
     5821 agcgaggatt tgacccattg gacacatcaa cccatagccc tttaccctga ttcattgggt
     5881 tatatttttt ccggcagcgc ggtaatggac tataaaaatt cttcaggact gggaagcgag
     5941 aaccagcctg ctctagtggc catatatacc tatcataata tggaatacga gcgttcaggt
     6001 cgaaacgatt atcaaacaca aggaatcgca tttagtcttg accatggaat gacctgggag
     6061 aaatatgacg ggaatccagt aattaaaaat ccaggaatta aagacttcag ggatcccaag
     6121 gtattttggc atgagcctac ccaaaaatgg attttaattc ttgttgcggg agatcatgcg
     6181 cgaatttaca attctaaaaa tctaattgac tggacctttt taagcgattt tggtcataat
     6241 gaaggcgctc atggcggcgt ttgggaatgt cctgatttat ttcctttgac gactgatcaa
     6301 ggggatcaaa aatgggtttt aatgatcagt attaatccgg gagggccaca ggggggatcg
     6361 gcaactcaat attttgttgg tgattttgat gggcaaaagt ttaccgcggc ccaaaaggag
     6421 agcaaatggc tggattttgg tcgtgacaat tatgccggag ttacttataa tgatgctcca
     6481 gaggacaaac gaattttaat gggttggatg agtaattggg attatgctca agtaaccccc
     6541 accacaaatt ggcgcagtgc tatgaccctg ccaagaagtt tggaattgaa gggcagtaac
     6601 tcagattatt accttgtaca aaatccaata attgagccct ccattattgc gaggacagtt
     6661 gaatttgatg ttgctcaagt cacagaaggg gttgttttgc cttcgagtca atttcaaatg
     6721 gaatttgaag tagacctcag cgaaaagaca gtatttgagt tagctaacga gcaggatcaa
     6781 tttgtttttt caatcgatcc aaccttgcga caaatgatgg tcgatcgccg cttttctggc
     6841 aaaatagaat tttccgataa atttgcgcca ggacggcaaa tttctgcgtt tatcccagaa
     6901 aatcgagccg caaaagtcac cattttcagt gatgcttctt caatagaaat atttgtggat
     6961 caggggcgct atgtttttac caatcaagtc tttcctgaac agccctatag ccacttgcgg
     7021 attgtttcgg aaggagtgaa aaccgataaa attatttttt cagaactcaa ttctatctgg
     7081 catgaacaat aaaattttta ttttttcaat aaccgtagcc cttgcaggat ttctttttgg
     7141 ttttgatacg gtggtgatca gcggcgcaaa taaaccactg caagaacttt gggcgctttc
     7201 tccgttcatg catgggactt ttattatgag tatggcgctt tggggtactg ttttggggtc
     7261 tcttatgggg ggaataccta ctcagaaaat ggggcgtaag aaaacactgt tctggatcgg
     7321 agtattattt tttgtttctg cactgggaag tgcggtggtt tctgatcctt atcttttttc
     7381 attttttcga tttatcggag gtgttggcgt tggggtttcc tcagtggcgg cccctattta
     7441 tatttctgaa atcacctctt ctgataaaag gggtcaatta ggaggactgt atcaattttg
     7501 cttagtcttt ggaattttgg tggcgtttat atcgaattgg gcgcttaagg gttttgatgg
     7561 ggccaatgat tggcgctgga tgcttggcgt cgaggccatt cctgctttgg cctatacact
     7621 aatggtatta aaagtgccgc acagcccaag atggttggtg ttgcaaaagg gtgatgagca
     7681 agaagctttg tctattttga ccctcattta tcaaaaagtc gatgaggcca aaagacattt
     7741 ggcggagatt aaattagacc gccaagaatc gagcggacag gatcgcttgt tccagaaaaa
     7801 atataaaaaa gtactttatt tgggttttct gatcgccttt tttaatcagc tttcaggaat
     7861 aaattttgtt ctttattacg ccccacaaat attggagcaa gccgggttag gaggaagcga
     7921 ttcgcttttt aattctattg caatcggcat tgtcaatttg atatttaccc ttatcggggt
     7981 tcgattaatt gatcgactcg gtcgtcgtca attgatcata ataggatctg taggttatat
     8041 cttgagtctt gtgatggttg gggtatgttt tcagtatgcc ttaagttcaa ctttattgtt
     8101 gacgtttatt tgtctgtttg ttgcagcgca cgccatcggc caaggtgccg tgatatgggt
     8161 gtttatctct gagatatttc ccaatcgggt tcgctcttat gggcaaagtt ggggcacagg
     8221 aacccactgg gttttcgcgg caattattac catgattacc ccatttttta tcgacgacag
     8281 tgagggaatt tttcgcgata atttagaggt gatttattac ttctttgcct tcatgatggt
     8341 cttgcaatta ctttgggccc tattcaaaat gcctgaaacc aaaggaattt ctcttgaaga
     8401 tttagaaaag gaattggtcg accatgaagc ttgattcccc agaaattatt tgttggggtg
     8461 aaattctttg ggatgtcttt gaggatcact ctgtgatcgg tggcgccccg tttaatgtag
     8521 cccaaagact ccatagcttg ggcgtcaata cactcatggt cagtacgatt ggtcgtgacc
     8581 cactcgggga aagcgtcttg gattatatgc gacaaaaggg actgagcact caaagtgttt
     8641 cgcggcacga ccatttagct acaggaaggg ttaatgtcat cttggatgaa caaggcgcgg
     8701 cgcgttatac catcgaggat cctgcagcct gggatcacat tggt
//
LOCUS       DPUP01000235            4310 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_15384,
            whole genome shotgun sequence.
ACCESSION   DPUP01000235 DPUP01000000
VERSION     DPUP01000235.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4310)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4310)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4310
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..484
                     /locus_tag="DHV98_09130"
     CDS             <1..484
                     /locus_tag="DHV98_09130"
                     /inference="COORDINATES: protein motif:HMM:PF00953.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06489.1"
                     /translation="ATIGVLSPFLYYNMFHRRKLFMGDSGSMVLGLLTAFYALSFVHE
                     VQSTPSELSHPYSWLLALTALPLLDLLRVIVIRWSQGRPIFSPDKNHIHHAYLNMGLS
                     HNQTTFIVMELTLSLWLFVYWFEFLTQGWHILVVALLMLGIYLGPILFYKLKQKYFFA
                     "
     gene            484..>909
                     /locus_tag="DHV98_09135"
     CDS             484..>909
                     /locus_tag="DHV98_09135"
                     /inference="COORDINATES: protein motif:HMM:PF12099.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06490.1"
                     /translation="MDRRNNIGRRLFTGLIVMTILWFTGPLCAQAEVKFNAATALLLV
                     PNFGVELSIAPHYSTQLDVLGSFWDSVGEDRDPYQINETFVEGRYYQNPDQSGWYTGA
                     HVGFGMFTLQKVNAFVIYDQYQDPETYSDSPGSFQSGRAG"
     assembly_gap    910..1001
                     /estimated_length=92
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1002..1208
                     /locus_tag="DHV98_09140"
     CDS             <1002..1208
                     /locus_tag="DHV98_09140"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06491.1"
                     /translation="YKKRLDARWALEAFIGGGLVQANYKGYSGFMRVDVLPGDTREFN
                     KSGEWALYRGGLMITYALFTPKKQ"
     gene            1212..2633
                     /locus_tag="DHV98_09145"
     CDS             1212..2633
                     /locus_tag="DHV98_09145"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06492.1"
                     /translation="MKQISITWLFIFGAVAMAQGQNHAEEFEALINQYVQSCENGPPT
                     IMPFANRKGYLVETSDSTWVDYPQGRVYKMRQEDLGKEQAYQFNIGYHVSDSLYLVHS
                     GGGVVYLHDGRTLQRVDESFYHHNQYSAASFAYQGDLFLFGGTGLFTRKDILTRYDRQ
                     TREWLLQKTDGQKPDFSSFMAGMVLGDYFYIIGEPFIDARQYDLQLSRDIAKRFTIYR
                     LNLKTWHWDLLGSVDPELSHDLDSVKLTAVDPEKGLLYVNSPRGLMVLYFLRNTAERY
                     QNPYPMRGSRXMDPESLMFMYCDSRQFIKSFTITQQELEARKVSSSILYQANMDVYYS
                     TLLEVIGVLFLVALILIVINELKFEKRIVIRLKGGTILFRSRNIRVFSPEEKELLMQL
                     ATSEALSFSDLEDIVSFPKDSQSVRVKKRDRHLRVLNEKIATIFNHDSANRPDYFTVQ
                     NSSDDKRSRLLGLNSEYFKIMCG"
     gene            2734..3795
                     /locus_tag="DHV98_09150"
     CDS             2734..3795
                     /locus_tag="DHV98_09150"
                     /inference="COORDINATES: protein motif:HMM:PF00953.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06493.1"
                     /translation="MNIDIPLILLMAVLLATLLYQPIYFICKELKIVDTPDWRKYDYK
                     AIPLGGGFLLVAVSIIGLVASMILFKGPISNDVLIMMLGALTLFITGIIDDLYQLRAS
                     IKLLIQIFVSFATLITSSIMLDNFHGLFGVMELGDMAAWLITMVYFVVFVNMFNLIDG
                     IDGLASGIGIIGLIFILATAEMAHEVLLSILSCFLLGTLVVLFVRNHTAQKMYLGDSG
                     SLSLGYLMGCLTLHQINIADIAFPVVDYAVYGPVYAMTLFWYPLMDLGRVFLIRIYKG
                     LSPFSPDRNHFHHKMVDRGYKHLTVSLMVMGLTLAYELLSFYLSKFMGVNALFCVMLG
                     VTSLTAYLLFLGPKELHND"
     gene            3788..4258
                     /locus_tag="DHV98_09155"
     CDS             3788..4258
                     /locus_tag="DHV98_09155"
                     /inference="COORDINATES: protein motif:HMM:PF02357.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein NusG"
                     /protein_id="HCK06494.1"
                     /translation="MINTAVQDPWLVLYVKRQTEKKVTERLQAQGITVYLPTITVVRQ
                     WSDRKKKLQIPAVSGVVFVQCTEPEKNQVFSVPGTVRYLFMDGKLAQVPHKEIVAMDE
                     YLQGKGNIDQTKYQKGQEIYLEAFKSSGIISKIGAHHFWVSLPDSGLTVRLRAA"
BASE COUNT         1036 a          861 c         1071 g         1248 t
ORIGIN      
        1 ggccaccata ggcgtgttaa gcccattttt atattataac atgttccacc gaagaaaact
       61 ctttatggga gactctgggt cgatggtttt gggtcttctc acagcttttt acgctcttag
      121 ttttgtgcat gaggtccaaa gcacgccgtc agagttgagt catccataca gctggctgct
      181 ggcgctcacg gccctaccgc tactggattt actcagggtc atcgtgattc gctggtctca
      241 aggccggcct atttttagcc ctgataaaaa ccacatccat cacgcctatt taaatatggg
      301 cttgtcgcat aaccagacga cgtttattgt gatggaactg accctatcgc tatggctttt
      361 tgtgtattgg tttgaatttc tgacccaggg ttggcatatt ttggtggtgg ctttactcat
      421 gctcgggatc tacttggggc caattttgtt ttataaactc aaacaaaagt acttttttgc
      481 ttgatggacc gcagaaacaa catagggcgc aggctattca cggggctgat tgtgatgacg
      541 atactctggt tcacaggacc cctctgtgct caagccgaag taaagtttaa tgcggcaacg
      601 gccctgctgc tcgtgcctaa ttttggcgta gagctcagca ttgcgcccca ttacagcact
      661 cagctcgatg tattgggcag cttttgggac agtgtgggtg aggaccgcga tccttatcag
      721 attaacgaga cctttgtgga agggcgttat taccaaaacc ccgatcaaag tggctggtac
      781 accggggctc atgtgggctt tgggatgttt accctacaaa aggtcaacgc ttttgttatt
      841 tacgatcagt atcaagaccc agagacctat agcgattcgc cgggtagttt tcaatcgggc
      901 cgcgctggan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntacaaaaaa agactcgacg
     1021 cgcgttgggc gcttgaggcc tttatcggtg gcggattggt gcaagcaaat tataagggtt
     1081 atagtggatt tatgcgcgtg gatgtattac cgggagacac ccgcgaattc aacaaaagcg
     1141 gtgagtgggc gctttaccgc ggcgggctga tgatcaccta cgcgttgttt acgccaaaaa
     1201 aacaataaat catgaaacaa atttctatca catggctttt tatttttggg gcggtcgcga
     1261 tggctcaggg ccaaaatcat gcggaagaat ttgaggcgct gatcaatcag tatgtgcaga
     1321 gctgtgaaaa cggccccccg accatcatgc cttttgccaa tcgaaagggg tatctggtgg
     1381 agacctctga cagcacttgg gtggattatc cgcaaggcag ggtttataaa atgcgtcaag
     1441 aagatttagg aaaggaacag gcctatcaat ttaatatcgg gtatcacgtt tcggatagtc
     1501 tgtatttggt gcactcgggt ggcggggtgg tttatttgca tgatgggcgc accctacaaa
     1561 gagtggatga gtcattttat caccacaatc aatacagcgc cgcttctttt gcttatcaag
     1621 gggacctgtt tctttttggc ggaacaggat tatttacccg aaaagatata ttgacccgtt
     1681 atgatcgaca aacccgcgag tggcttttgc aaaagaccga tggtcaaaag cccgattttt
     1741 cttcgttcat ggcgggtatg gtgctggggg attactttta catcattggt gagcctttta
     1801 tcgatgcgcg acaatacgac ttgcagctga gtcgcgatat tgcaaaacgc tttacgattt
     1861 atcgcttaaa cctcaaaact tggcattggg atttgctggg ctctgtagat ccagaattga
     1921 gtcatgatct cgattcagtt aaattaactg cggtagatcc ggaaaaaggc ttgctgtatg
     1981 tgaacagtcc tagagggctc atggtgctgt attttttgcg caatacggca gagcgctacc
     2041 aaaaccctta tcctatgcgg gggtcaagag nnatggaccc ggagtcattg atgtttatgt
     2101 attgcgacag tagacaattt atcaaatcct ttaccatcac ccagcaagaa cttgaggcta
     2161 ggaaagtctc ttcgagcatc ctttatcaag ccaatatgga tgtttattac agcacactcc
     2221 ttgaggtaat cggggtcttg tttctggtgg ccttgatcct gattgtgatc aacgagttaa
     2281 agtttgaaaa acgaattgtg atccggctta aggggggcac cattttattt cgttccagaa
     2341 atattcgggt atttagtccc gaggagaaag aactcttaat gcaactcgct acctcagagg
     2401 ccctgtcatt tagcgatttg gaggatatcg tgagttttcc caaagatagc caaagcgttc
     2461 gcgtgaaaaa aagagaccga caccttaggg ttttaaatga gaaaatcgcc acgattttta
     2521 accacgacag cgccaacagg cctgattatt ttaccgttca aaacagctct gatgataaac
     2581 gcagtcgatt gctgggtctt aattcagaat attttaaaat aatgtgtggt taatcacggg
     2641 gttttggaca ctatagtggg gtaaaaaata gtggatccac ttgtttccac taaatttttt
     2701 aagacataaa ataaaaggtg gtatttttac ggtatgaata tcgatattcc acttatatta
     2761 ctcatggctg tacttctggc aacgctgctt tatcagccga tatattttat ctgtaaggag
     2821 ctgaaaatag tggatacacc agattggcgt aaatacgatt ataaggccat tcctctcggc
     2881 ggcggttttc ttttggtggc ggtttcgatt atcggtttag tggcgagcat gattttgttt
     2941 aaggggccta tttctaatga tgtgttgatc atgatgctgg gggcgttaac cttgtttatt
     3001 accggaatta ttgatgatct ctatcaactt cgggcctcga taaaactatt gattcagatt
     3061 tttgtgtcct ttgccacgct gattacctcg agtatcatgc tcgataattt ccacggctta
     3121 tttggcgtga tggagctggg ggatatggcc gcctggctga tcaccatggt atattttgtg
     3181 gtttttgtca atatgtttaa tctgattgat ggtatcgacg gtttggcttc gggtatcggg
     3241 attatcggcc tgatctttat tctggccact gccgaaatgg cccatgaggt tttactctcg
     3301 atattgagtt gttttttgtt gggcaccctt gtggtgctgt ttgtgcgcaa ccataccgcc
     3361 caaaagatgt atttgggaga cagcggctcg ctgagtctgg gttaccttat ggggtgtttg
     3421 actctgcatc agatcaatat cgccgacatt gcttttccag tggttgatta tgcggtgtat
     3481 ggcccggtct atgccatgac cttgttttgg tatccgctta tggatttagg gcgggtgttt
     3541 ctaataagaa tttacaaagg attgtcgccg tttagcccgg accgcaacca ttttcatcat
     3601 aaaatggtgg accgcggata caagcatctc actgtaagtc ttatggttat ggggcttact
     3661 ttggcctatg agctgttgtc cttttatctg tcaaaattta tgggggtaaa cgctttgttt
     3721 tgcgtgatgc ttggtgtaac ttcgctaacg gcttatttgc tgtttttggg gcccaaagaa
     3781 ttgcacaatg attaacaccg cagttcagga tccatggttg gtgctttacg taaaacgcca
     3841 gactgagaaa aaagtcaccg agcgattaca agcgcagggt atcactgtgt atttgccgac
     3901 cattaccgtg gtgcgccaat ggagtgaccg caaaaaaaag ctgcagattc cggccgtatc
     3961 cggggtggtg tttgtgcagt gcacggagcc cgaaaaaaat caagtcttta gcgtaccggg
     4021 aacggtgcgt tatttgttta tggacggtaa gctggctcag gtgccgcaca aagaaatcgt
     4081 ggccatggat gagtacctgc agggtaaagg caatattgac cagactaaat atcaaaaagg
     4141 acaagaaata tacctcgagg cgtttaaaag ctcggggatc atcagtaaaa taggggcgca
     4201 tcatttttgg gtgtcgcttc ccgattcggg gcttacggtg cgcctgcgcg cggcttaggc
     4261 cttttttcat taagtagtat tgtatttggg cggactacta aatgggactg
//
LOCUS       DPUP01000236            4098 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_3234,
            whole genome shotgun sequence.
ACCESSION   DPUP01000236 DPUP01000000
VERSION     DPUP01000236.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4098)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4098)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4098
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1055)
                     /locus_tag="DHV98_09160"
     CDS             complement(<1..1055)
                     /locus_tag="DHV98_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010231030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HCK06495.1"
                     /translation="MKFNTKAIHGGQKHDPAYGAVMPPIYQTSTYAQTSPGAHKGFEY
                     SRTHNPTRAALEAALASIEDGAHGLAFGSGLAAIDAVMKLLSPGDEVISTNDLYGGTY
                     RLFTKIFERFGIKFHFVGMSDVSAIEAKINQNTKLIWVETPTNPMMNIVDIVACAAIA
                     KKHQVLLAVDNTFATPYLQQPLTLGADIVMHSATKYLGGHSDVVMGALVVRDNALAER
                     LYFIQNASGAVCGPQDSFLVLRGIKTLHVRMQRHCENGRAVAQYLKSHPEVQMVYWPG
                     FEDHPNHDIARSQMRDFGGMISFVTKGNDFQKAIAIVEKLKVFTLAESLGGVESLAGH
                     PASMTHASIPKEEREKTG"
     gene            1054..1620
                     /locus_tag="DHV98_09165"
     CDS             1054..1620
                     /locus_tag="DHV98_09165"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06496.1"
                     /translation="MRLFSLYKSKGFQSQSKNKSKRKQLYFYTVNVMRSFFGFWSALT
                     LFSCLDTPSISWVMLNKTAQEQNICQGRACPDLTISFPKFESRDSVALTRLNKTRDSL
                     IMDALYLGSDRPNFGLSIEEGIDQYLWVGLDYKTELLAAESYGGQINITPIKQGDTVL
                     TIELTGQLILPQGKKLLNRKKHLRLGVK"
     gene            1629..1988
                     /locus_tag="DHV98_09170"
     CDS             1629..1988
                     /locus_tag="DHV98_09170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06497.1"
                     /translation="MKKLYYLSSCSTCKRILKQWDLPRDFALQDVKSNPLTLEDLAQM
                     HRRSGSYEALFSRRAKLFQERQLAKEALDETRYKALLLEHYTFLKRPVLIWNDEIFIG
                     SAKATVDRATKTIQARD"
     assembly_gap    2085..2188
                     /estimated_length=104
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2189..2887
                     /locus_tag="DHV98_09175"
     CDS             <2189..2887
                     /locus_tag="DHV98_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013186275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HCK06498.1"
                     /translation="CAFFGMSLNMTSFFKGLALSTPINSSVVITIVPVILLILGRLFL
                     KERIAWQKTFGIFLGLAGAVGLILLDVPQQLNAPNIPLGNFYFVMNALSYSIYLIIVK
                     PLNAKYHVLTLMRYFFTVAVVINLPLGYQEFVAVAWSELTPVIIGQLSFVVLGTTVLT
                     YLFNIYALKHLSPSTIGAFIYLQPVVATIVALWVGVDQLTPLRCVTALMIFTGVYLSS
                     QKRKLRKNEPVKAP"
     gene            2933..3910
                     /locus_tag="DHV98_09180"
     CDS             2933..3910
                     /locus_tag="DHV98_09180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HCK06499.1"
                     /translation="MPLVDAQYHPKGWFKNGHFSTIYSAKIRRVPNLDFQRDRLSLSD
                     GDFLDLDWSYAKNTAKQKPKSVVILLHGLEGNAQRSYVQGQAKALLDAEFDVCAMNFR
                     GCSGEPNLKLQSYNAGKTEDLDQVVSSIVKLNRYSRIFAVGFSLGGSLLLNYLGAKKG
                     DYQQIYGAAAVSTPLDLQGSIERLSEWDNRAYQWVFLSTLKVKYRQKQEAFPMDLSLD
                     APRAMKSLKDFDNLYTAPVHGYLNAEDYYQKNSPITTLQTIESPVLILNAQNDSFLSQ
                     ACLPVSLAKSSKNIYLEAPKYGGHVGFYTPSGPYYNETRVSEFFTAQMA"
BASE COUNT         1087 a          922 c          873 g         1112 t
ORIGIN      
        1 cctgtttttt cgcgctcctc ttttgggata ctcgcatggg tcatactggc cggatgcccc
       61 gcgagacttt ccaccccccc gagactctcg gcaagggtaa acactttgag tttttcaaca
      121 atcgcaatgg ccttttgaaa atcattgcct ttggtgacaa atgaaatcat accgccaaaa
      181 tcgcgcatct ggctacgggc aatatcgtga tttgggtgat cttcaaaacc aggccaataa
      241 accatttgaa cttcggggtg ggatttgaga tattgtgcta cggcacgtcc attttcgcaa
      301 tggcgctgca tgcgcacatg cagtgtctta atcccacgca acaccaaaaa actatcttgt
      361 ggcccacaga ccgccccgct ggcgttttga ataaaataca aacgctcggc caaagcattg
      421 tctctaacga ccaaagcccc cataaccaca tcactgtggc ctcctaaata ttttgtagca
      481 ctgtgcatca cgatatcggc gccaagggtc aagggctgct gcaaataagg cgtggcaaaa
      541 gtattgtcta ctgccaaaag gacttggtgt tttttggcaa tcgcagcaca ggcgacaata
      601 tccactatat tcatcatcgg gttggtcggg gtctccaccc aaatcaattt agtgttctgg
      661 ttgatctttg cctcaatagc agaaacgtca gacatgccca caaaatgaaa tttaatccca
      721 aaccgctcaa atattttggt gaataagcga tacgtccccc cgtaaagatc atttgtcgaa
      781 ataacttcat ccccgggact gagcagtttc attacggcat caatcgccgc caaaccactg
      841 ccaaaggcca agccatgggc tccatcttca atactcgcca atgcagcctc taacgctgcg
      901 cgggtaggat tgtgggtgcg agaatattca aatcctttgt gtgcccctgg gcttgtttgc
      961 gcgtaggtcg aggtttgata aattggcggc attacggcgc cataggctgg atcgtgtttt
     1021 tgccctccgt gaatggcttt ggtattgaat ttcatgcggt tattttcttt atacaaaagt
     1081 aagggattcc aaagtcaatc taaaaacaag tctaagagaa aacaattgta tttttacaca
     1141 gtgaatgtaa tgcgctcttt ttttggcttt tggtctgcct taacactatt tagttgttta
     1201 gacacgcctt ctatttcatg ggtgatgctc aataaaacgg ctcaggagca aaatatttgt
     1261 caagggcggg cttgtcctga cttaacaata tctttcccaa agtttgaaag tagagattct
     1321 gtggccctta ccaggctgaa taaaacaaga gatagcctta tcatggatgc cttatattta
     1381 ggaagtgatc gcccaaattt cggcctaagc atagaagaag gtatcgatca atatctctgg
     1441 gtgggtttag actataaaac agaacttttg gccgccgaat cttatggtgg ccaaataaac
     1501 atcaccccaa taaagcaagg ggatactgtg cttaccatag aattgaccgg ccaattgatt
     1561 ttgcctcaag gcaagaaatt actcaacagg aaaaaacacc ttcgtttggg cgtcaaataa
     1621 atcatcaaat gaaaaaactc tattatttaa gcagttgtag cacatgtaaa cgcattctga
     1681 aacaatggga cttgcccagg gactttgccc tacaggatgt caaaagcaac ccccttaccc
     1741 tagaggattt ggcccaaatg catcgacgct caggaagcta tgaagctctg tttagccgaa
     1801 gagctaagct gtttcaagag cgacagctcg ccaaagaagc attagacgaa acgcgttaca
     1861 aagcattgct gctcgagcac tacacgttct taaaaagacc ggtcttgatt tggaacgatg
     1921 aaatctttat tggatcggcc aaagcgacgg ttgaccgcgc gaccaagacc attcaggccc
     1981 gtgactaagc ctgctttttc tcatagaacc ttagcgctta tggctgcgac tgcagcaggg
     2041 atcatctatg ggatcaatca tacgatcgcc aaaggactca tgccnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnntg tgcgtttttt gggatgtctt taaacatgac
     2221 ctcttttttt aaggggcttg ctttgtccac gccaattaac tcctcggtgg tcatcaccat
     2281 tgtgcctgtg attctgctta ttctcggccg attgttttta aaagagcgca ttgcttggca
     2341 aaaaactttc ggtatttttc tcgggctggc tggggcggtt ggactgatct tactcgatgt
     2401 gccccaacaa ttaaatgcgc ccaatattcc cttaggcaac ttttactttg tcatgaatgc
     2461 cttgtcctat tcgatctatt tgatcattgt caagcccctt aacgcaaaat atcatgttct
     2521 gacgctcatg cgctactttt ttactgttgc cgtcgtgatc aatctgcctc tgggttatca
     2581 agaatttgta gcggtagcct ggtctgaatt aaccccggtg attattggtc aattgtcttt
     2641 tgtggtttta gggaccacgg tactgactta tttgtttaat atatacgccc tgaagcattt
     2701 aagtccgtcg accatagggg cttttattta ccttcaacct gtggtggcta cgatcgtggc
     2761 gctttgggtt ggtgtcgatc aactgacacc gctgcgatgt gttactgccc tgatgatttt
     2821 taccggggtt tatttgagca gtcaaaaacg taaattgcgc aaaaatgagc ccgttaaagc
     2881 gccctgaatt gcgccacaat tgcctaaatt tgaccctcaa taatttgatc caatgccctt
     2941 agttgacgcc caatatcatc ccaaaggatg gtttaaaaac ggtcattttt caacgattta
     3001 ttcggcaaaa ataagacgtg ttccaaatct cgattttcaa agagatcgtt tgtcgttaag
     3061 cgatggtgat tttttggatc tagattggtc ctatgcaaaa aatacggcca agcaaaagcc
     3121 caagtccgta gtgatcttac tccatggttt agaggggaat gcccaacgct cgtacgtgca
     3181 ggggcaggcc aaggctttat tggatgcaga gtttgatgtt tgtgcgatga attttcgcgg
     3241 gtgttcaggg gagccaaacc ttaagcttca gagttacaat gcggggaaaa cagaagactt
     3301 ggatcaagtg gtgtcctcta ttgtcaagct aaatcgatac agccgcattt ttgccgttgg
     3361 attcagttta ggcggcagtc ttttacttaa ttatctgggc gcaaaaaaag gagattacca
     3421 acaaatttac ggagcggccg ccgtgtccac ccctctagat ctacaaggct ccattgagcg
     3481 attatctgag tgggacaatc gagcctatca gtgggtcttt ttgtccactc taaaagtcaa
     3541 atatcgtcaa aaacaagagg cctttcccat ggatttatcg ttggacgcgc cccgcgccat
     3601 gaagtcccta aaggattttg ataatcttta caccgctccc gtacacggct atttgaacgc
     3661 cgaagattat taccaaaaaa atagtccgat cacgacctta caaacaattg agtcgccggt
     3721 actgatcctc aacgcccaaa acgatagctt tctttctcag gcctgcctgc ccgtaagcct
     3781 tgcgaaaagc tcaaaaaaca tttatcttga ggccccaaaa tatgggggtc atgtcggctt
     3841 ttatacgcct tcaggccctt actataatga aacgagagta agcgaatttt ttacggccca
     3901 aatggcttaa tattaaacgt aataaagtaa ctatgagaac ttatctaata atgaccgctc
     3961 tggctttgac cataagcagt tgcggcgaga ccaaaaaaga agaaaaaact gccctgaaaa
     4021 tcggtcaaaa taataccgaa tctgtcacgc catctggtac agcactcgct ttgagtggaa
     4081 atgacatgat gcaattcg
//
LOCUS       DPUP01000237            2929 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_24029,
            whole genome shotgun sequence.
ACCESSION   DPUP01000237 DPUP01000000
VERSION     DPUP01000237.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 2929)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2929)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2929
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..>167
                     /locus_tag="DHV98_09185"
     CDS             <1..>167
                     /locus_tag="DHV98_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020028945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK06500.1"
                     /translation="LATSFLTSHFLFRWRRSMVDWYHQAYDRARTIEGASQRVQEDTV
                     RFSRIMESLGT"
     assembly_gap    168..272
                     /estimated_length=105
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <273..848
                     /locus_tag="DHV98_09190"
     CDS             <273..848
                     /locus_tag="DHV98_09190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014953258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK06501.1"
                     /translation="GTSFIEAIMVLIEFFPILLGLSAGISVLFFGDWKYGLVTGALIW
                     TVGGTLLMVLLAWFLRLVGIEYDLQKKEAAYRKLLVIAEDDNTIRPKSLDEIFEDVKS
                     IHYKSYFQYIWFSIGRLAYLQTNVLVGYIFLAPAIVAGVMTLGVMQQILRAFGRVESS
                     MLYLFNSWPTIIELASVYARLREFERQIKES"
     gene            complement(856..1041)
                     /locus_tag="DHV98_09195"
     CDS             complement(856..1041)
                     /locus_tag="DHV98_09195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020026702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06502.1"
                     /translation="MRVLKVMDTLKLCVVDLEVELNGSLRHAPTLCAMDGQYVIPLNT
                     PDGRPILMDFKNAIKLA"
     gene            1278..1625
                     /locus_tag="DHV98_09200"
     CDS             1278..1625
                     /locus_tag="DHV98_09200"
                     /inference="COORDINATES: protein motif:HMM:PF04519.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06503.1"
                     /translation="MTTPNVSIINEGLQIKGNLSTPGSLKVLGGIAGHTKCNDIIVAV
                     MAIIKGNIAAEEVIVFGKVVGNIRADVVSLKAGSHVMGNITSSNFSVEEGAELEGSLS
                     INPKDVTQSASSS"
     gene            complement(1952..2035)
                     /locus_tag="DHV98_09205"
     tRNA            complement(1952..2035)
                     /locus_tag="DHV98_09205"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:1.23"
                     /anticodon=(pos:complement(2001..2003),aa:Tyr,seq:gta)
     gene            2176..2904
                     /locus_tag="DHV98_09210"
     CDS             2176..2904
                     /locus_tag="DHV98_09210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008032093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HCK06504.1"
                     /translation="MYDKATKPTWIIAKERQKRIAGQETVWLFGLHAVRDALMNPARE
                     KLRLVLTKNAADKLLEAIDLGGIEPQIVDPRNFDVPIDAGSVHQGAALEAKPLHWGTV
                     QDVCITGEGLPLLVILDRVTDPHNVGAVLRSAEVFGARAVIAPQRHSAPETGALAKTA
                     SGALERQPYLRVGNLADTMIDLKNMGYILLGLDSGAPMTLAQGITDAEKRPIALVLGA
                     EGPGLRDKTRETCEIGRASCRERV"
BASE COUNT          780 a          577 c          687 g          780 t
ORIGIN      
        1 ttggccacat cttttttaac aagtcacttt ctatttcgtt ggcgtaggtc aatggtcgac
       61 tggtatcacc aggcctatga tagagcgcgg accatagaag gtgcatccca acgtgttcaa
      121 gaggacacag tacgtttttc tcgtataatg gagagcttag gaacaagnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggaacaag ctttattgaa gcaataatgg
      301 ttttgatcga attttttcca atattgcttg gcttgtctgc tggaatttca gtcctctttt
      361 ttggtgattg gaaatatggg ttggtaactg gagcattaat ctggacagtg ggaggtacac
      421 ttttgatggt gttgctagct tggtttctta ggttggtagg aattgaatac gatctgcaaa
      481 agaaagaagc cgcttatcgc aaattattag taatagccga agatgataat actatccgcc
      541 ccaaaagcct tgacgagatt ttcgaggacg tgaaatccat tcattacaaa agttattttc
      601 aatacatctg gtttagtatt ggtagattgg catatctcca aaccaacgtc ttggtcggct
      661 acatattttt ggctccagcg attgttgcag gggtaatgac ccttggcgtt atgcaacaga
      721 tattgagagc ctttggtcga gttgaaagtt caatgcttta cctatttaac tcttggccaa
      781 cgataattga gctagcatca gtttatgcta ggttgagaga atttgagaga caaataaaag
      841 aatcttaact actgtttagg ccaacttaat tgcattctta aagtccatta atattggtct
      901 accgtccggt gtgtttaatg gaattacata ttggccatcc atggcgcaaa gtgtgggggc
      961 atgcctcaag cttccgttta actcgacctc aagatcaaca acacatagtt ttaaggtatc
     1021 cataactttt aatacacgca ttttaatcat ccatccctga gtttgttttg ttgtaagcac
     1081 tacttaactg aattcatgcg aacttttgtt cttttatttt tcaagtatga caagacataa
     1141 gaaactaaaa cgttgggcaa caaaagctag cgcatttttt ttttttgtgt ttctatttca
     1201 atctgagagc aagtaactgt taaaattgcc cacaaaaaaa caacttccaa cccaaaactg
     1261 caggaaggac ataatcaatg acaacgccta acgtttccat cataaatgag ggccttcaaa
     1321 tcaaaggaaa cctaagtaca ccaggttctt taaaagtact tggaggcatt gcgggacaca
     1381 caaagtgtaa tgatattatt gtcgcggtta tggcaatcat taaaggaaat attgcagctg
     1441 aagaagttat tgtctttggt aaggtggtcg gtaatattag ggctgatgtt gtaagcttga
     1501 aggcaggtag tcatgtaatg ggcaatataa cgagctcaaa cttctcagtt gaagaaggcg
     1561 ccgaacttga aggatcactc agtattaacc caaaagatgt tactcaaagc gcgagtagtt
     1621 cttaattttg tatgtagcta gcagagcgaa ggttttgacc tgatcagtta tttgatctca
     1681 gaagtatcta aatagaggtt tgccgtttta tagcaagccc tggtctttaa aggtggattt
     1741 atgaagccat aaacgtcaga tggcataaag cggtctttag gctgtttcca aagtcatcat
     1801 atcaacaaaa acgggtcgcc tttgaactaa attggacaag attgcgtcca tgcaaaatac
     1861 tgctgaatga ttttgtaaag aagtgcttaa agcgatcatg ttatgtctct ctataatatt
     1921 agaaacaaaa acatcaggcg tacaactgaa atggtgggcg atcctggaat cgaaccaggc
     1981 acgagtcgcc tcggcggagt tacagtccgc tgccgcacct tgcagcacat cgcccactga
     2041 gtgtgggatt actaaagccc ctatggtgcg tcaaggctaa aagcacctga cttgcctttg
     2101 gcctgcaaat tagcgtattt tccttgcaag gccgcgttca agatgcgcaa tgtggcgcga
     2161 aagaatgagg ccaaaatgta cgataaagcc accaaaccga cctggatcat cgcgaaagaa
     2221 cgccaaaaac gcatagcggg gcaagaaacc gtctggcttt ttggcctgca tgcggtgcgt
     2281 gatgcgctga tgaaccctgc acgtgaaaaa ctacgtttgg tcttgaccaa aaatgccgcc
     2341 gataaattgc ttgaagctat tgatcttggt ggaattgagc ctcagattgt tgatccgcgc
     2401 aactttgatg tgcccattga tgcgggctcg gtgcatcaag gggcggcgct tgaggccaag
     2461 ccgttgcatt ggggcaccgt gcaagatgtt tgcatcacag gcgaaggcct gccgctgctc
     2521 gttattttag accgcgtgac tgatccgcat aacgttgggg cggttttgcg ctcggccgaa
     2581 gtgtttggtg cgcgcgcggt gatagcgccg cagcgccact cggctcccga aacaggggcc
     2641 ttggccaaaa ccgcctctgg tgcacttgag cgtcagccct acttgcgtgt gggaaactta
     2701 gctgacacga tgatcgatct taagaatatg ggttatattt tgctgggtct tgacagtggc
     2761 gcgcccatga ctttggcgca aggcataacc gacgccgaaa aacgcccgat cgccttagta
     2821 ctgggtgccg aggggccggg cctgcgcgac aaaacccgcg agacatgtga gatcggaaga
     2881 gcgtcgtgta gggaaagagt gtagatctcg gtggtcgccg tatcattaa
//
LOCUS       DPUP01000238            5718 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11764,
            whole genome shotgun sequence.
ACCESSION   DPUP01000238 DPUP01000000
VERSION     DPUP01000238.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5718)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5718)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5718
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..684)
                     /locus_tag="DHV98_09215"
     CDS             complement(<1..684)
                     /locus_tag="DHV98_09215"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003435576.1"
                     /note="dehydratase component, catalyzes the isomerization
                     between 2-isopropylmalate and 3-isopropylmalate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HCK06505.1"
                     /translation="MAKTLFDKVWDAHLVEEMDNGPSVLYIDKHLIHEVTSPQAFQEL
                     EDRGITLFRPDQVVATADHNTPTLDQDKPVRDPLSRKQLQQLTDNCQKYGITLYGLGH
                     EYNGIVHVMAPELGITQPGMTMVCGDSHTSTHGAFGSIAFGIGTSQVAQVFASQSLLL
                     TKPKTMRVTVNGPLAKGVLPKDVILYIIAQIGTNAGTGYFCEYAGEVFEQMSMEGRMT
                     VCNMSIEMGA"
     gene            complement(718..1896)
                     /locus_tag="DHV98_09220"
     CDS             complement(718..1896)
                     /locus_tag="DHV98_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010516533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HCK06506.1"
                     /translation="MSAEQIQIFDTTLRDGEQVPGCKLNKEQKLIIADQLEALGVDVI
                     EAGFPVSSPGDFEAVAAIAKQVKHATVCGLTRAVEHDIDVAAEALKAAKKPRIHTGIG
                     TSDSHIKYKFKSTQEEIIQRAYAAVAYAKRYVEDVEFYAEDAGRTDNAYLARVCEAAI
                     KAGATVLNIPDTTGYCLPEEYGAKIKYLKENVKGIDQAILSCHCHNDLGLATANSISG
                     VVHGARQIECTINGVGERAGNTALEEVVMILKQHPGLNLLTNIKTPQLYQTSQLVSYH
                     MGVNTQPNKSIVGANAFAHSSGIHQDGVIKNRQTYEIIDPKDVGVTESAIVLTARSGR
                     AALAYRAKLVGYELTKLQLDEVYQTFLRFADQQKEVQDNDIHRIIESSKIYSEILINS
                     "
     gene            2047..3626
                     /locus_tag="DHV98_09225"
                     /pseudo
     CDS             2047..3626
                     /locus_tag="DHV98_09225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019669513.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    2368..2418
                     /estimated_length=51
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3639..4070
                     /locus_tag="DHV98_09230"
     CDS             3639..4070
                     /locus_tag="DHV98_09230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007839392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation regulator"
                     /protein_id="HCK06507.1"
                     /translation="MTVTLTRQNDDYLFHATGPNQHTVSMDFNKEGAPQGASPMELLL
                     MAIGGCNAIDIIYVLKKQRQTVRGYTVKVTGERAAVEKANPFKSARVEIYLEGDIVPA
                     KALRAAALSFEQYCSVSMSLRGSMSIDYAVFVNGEKVTHSE"
     gene            4070..5062
                     /locus_tag="DHV98_09235"
     CDS             4070..5062
                     /locus_tag="DHV98_09235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008269357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase"
                     /protein_id="HCK06508.1"
                     /translation="MHFSTPDNQSSSTWGQDHGPSKSALLDVAARIKPWIHRTPVATS
                     RYLNELSGAALYFKCEQLQRMGAFKMRGAVSAIAALTDQERARGVVTHSSGNFGQAVA
                     LASKIMGIKAYVVMPLGTPKVKRDAVLSYGAEVTDCAPNLWARETATQEIINKTGATA
                     LHPSNAMEVILGNATATMELLEEVPDLNGVMAPVGGGGLLAGTALATAHFGHNCHCWG
                     AEPAAVDDAFRSLKMGSIQTNDQTNTIADGLKTQLGSINFPIIQNGVASIFCVDESEI
                     IASMRLLWERTKMVVEPSSAVALAAVLKYPAQFSGKKIGLILSGGNVDLSQLPF"
     gene            5142..>5718
                     /locus_tag="DHV98_09240"
     CDS             5142..>5718
                     /locus_tag="DHV98_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HCK06509.1"
                     /translation="MRYNWWLLIFGVLSPMLLAQQRELKPYAIELDYYYGSILEHNSD
                     IAHLITGHPTGFNLIYNRKTYGYNEWESRYNYPDWGFTFNYQDMGNPYLGKNYGLYGH
                     FNWYFWKRRLRFGIGQGVAMAGNPYDAEDNYQNTAYGSRFMSTTFLKFNLIQENIYRG
                     IGFKLGTGIIHYSNANFKAPNNSTNTLYFSAR"
BASE COUNT         1506 a         1197 c         1289 g         1675 t
ORIGIN      
        1 tgcccccatt tcgatactca tattgcagac ggtcatacgg ccttccatac tcatttgctc
       61 aaatacttcg cctgcgtact cgcaaaaata gcctgtaccg gcattggttc cgatctgagc
      121 aattatataa agaataacgt ccttaggtaa taccccttta gccagggggc cattgaccgt
      181 gacgcgcata gttttgggtt tggtcaaaag cagactttga ctggcaaaaa cttgggcgac
      241 ctgacttgtt ccaatgccaa aggcgatact gccaaaggca ccatgagtcg aggtgtggct
      301 gtccccgcaa accatggtca tgcccggttg cgtgattccc aactccgggg ccatcacatg
      361 gacaattcca ttatactcgt gtcccaatcc ataaagagta ataccgtatt tttgacagtt
      421 atcggtgagc tgctgcaatt gctttcggct caggggatct cttactggtt tgtcctgatc
      481 taaagttggg gtattgtgat ctgctgtagc gaccacttga tcgggcctaa acaaagtaat
      541 gccacgatcc tcgagctctt gaaaggcctg tggactggtc acctcgtgaa ttagatgctt
      601 gtcgatatac agtacgctcg gcccgttgtc catttcctcc actaagtgcg cgtcccatac
      661 tttatcaaaa agtgtttttg ccatcggttt actttgggtt taaagtcttt ggataaatta
      721 tgaattgatc aggatttctg aataaatttt gctggattcg ataatccggt gaatatcatt
      781 gtcctgaact tccttttgtt ggtcggcaaa ccttaaaaaa gtttggtaga cttcatccaa
      841 ttgtagtttc gttaattcat agcccactaa ttttgctcgg taagccaaag ccgcgcggcc
      901 acttcgtgct gtgagaacaa tcgccgactc tgttacccca acatctttgg ggtcgatgat
      961 ctcgtaggtc tgtctatttt tgatcacacc gtcttgatga attccagagc tatgtgcaaa
     1021 agcatttgcc ccgacgatcg atttattggg ctgggtattt acccccatat gataagacac
     1081 aagctggctg gtttgataga gttggggggt ttttatattg gtcaataaat taagccctgg
     1141 gtgctgtttt aaaatcatca cgacctcttc tagggccgtg tttcctgcgc gttcgcccac
     1201 accgttaatg gtgcattcga tttgtcttgc tccgtgcacg actccggaaa tagaattggc
     1261 cgtagccaaa cctaggtcat tatgacaatg acaggagaga atggcttggt caattccttt
     1321 gacgttttcc ttgagatatt tgatttttgc cccatattct tcgggcaaac aatacccggt
     1381 ggtgtctgga atattcaata cagtagcccc agctttaatg gcggcttcac acacgcgtgc
     1441 caagtaagcg ttgtcggtac ggccggcatc ttctgcgtaa aactctacat cctcaacata
     1501 tcttttggca taggctacag cagcatacgc ccgttggata atttcttctt gggttgactt
     1561 aaacttgtat tttatatgag aatctgatgt gccaattccc gtgtgaattc gtggtttttt
     1621 ggcagctttt aatgcctcgg cggcgacatc aatatcgtgc tcaaccgctc ttgttaaacc
     1681 acaaaccgta gcatgcttca cttgctttgc aatggcggca acggcctcaa aatctccagg
     1741 gcttgataca ggaaatcccg cttctataac atcgacgcct agggcttcaa gttgatcggc
     1801 aataatcagt ttttgctctt tattgagttt acatcctggg acctgttccc catccctaag
     1861 ggtggtatcg aatatttgaa tttgctcagc agacatttgt gattaaatat tttgataatt
     1921 gaagagcgaa tgtatatttt gtagggtatt taaggagggt tttagtcgca tgcattacgg
     1981 cgtttaccgg ttcttttgta caaacaatta attgtaaatc aaatatttaa aatcaggtcg
     2041 gttcctatgc ccaaaattca aaaagacaat ttattcgatc tgattaaatc cctttccaaa
     2101 tcggagaagc gacaattcag tttgtatgca ggtcgtcttg gggtgaacga ccaggctaaa
     2161 ttcatgcaat tattcgccat tttagacaaa caaaatcaat acaatgaggc gcaaattctt
     2221 gaacacaaga cgattgctaa aaaacagttg tccaatctca aaggccattt gtacaagcag
     2281 attttgatca gtttaaggtt aaatccgatc catcaaaata ttcgtcttca aataagagag
     2341 cagttagatt ttgctaccat actttatnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnngt caaagtttaa aaatgttgga gcgcgccaaa ggaatcgcgc
     2461 tggagcatga agagaaaaat atggctgctg aaattattga gcttgaaaaa gtaatcgaga
     2521 gccagtacat caccagaagt attagcaata gagcggagtt acttgtcgct gaatcggcaa
     2581 aaatcggtac gcttaatgaa atatcaagtc aattgtccaa cctctcgctt caactttaca
     2641 gtcttttttt acaaaagggt tacgttaaaa cggacactga attgcgcttt gtacaagaat
     2701 tttttgccag tcgaatgcct gaagttcata tggacgactt aggctttcgt gaacgccttt
     2761 ggtattacaa cgcgcaactt tggtacaatt ttattatcca agactttttg gcctgcttta
     2821 cttatgccac ccgatggacc gagttgtttt atcgggcgcc aaaaatgatt gatctaaatc
     2881 ctgtttttta tctgcgcggg gcccagtatt tactggaagc cttgtttttt attggggatg
     2941 tttctcgatt tcaaagcgct cttgatcgtt ttgagcagac gatcgatcgg ccttcattcc
     3001 ctcagcgtga gaacgtgcaa agtttggcct ttttataccg gtatggccat aagtttaatg
     3061 cccattttat ggcggggact tttcatgaag gactgcgctt agtggatcct gttttggcag
     3121 gaattgagca ttaccgcgaa aaaaaagacg agcaccacgt gatgatcttt tattataaaa
     3181 ttgcttgcct ttattttggt tgtggccagt ataaattatg tattgagtac ttggggttga
     3241 ttattgaaaa taagtcttta ggcatgcgcg aggatttgct ttgtttttca cgaatattaa
     3301 atcttgtggc ccactatgaa gcgggtattg attatcaaat cgagcgtctt attttgagca
     3361 cgtacaagtt tttaataaaa atggaagact tgcaccaagt gcagcgtgcg atgatttctt
     3421 ttataagaag cttgacccaa gtttatcccc atgaaatcaa aaaatcattt aaaaaattgc
     3481 acgaaacgtt gagccaatat aaaaatgatc cattcgagcg tcgcagtttt ctctatttag
     3541 atatcctaac ttggctgcaa agtaatatag agggcaaaag tattccagaa ataattcaac
     3601 agcgtgtggc acaatccaca tcataaaaca caaatattat gaccgtcacc ttgacccgac
     3661 agaacgatga ttatttattc catgctaccg gaccaaacca acacacggtg tctatggact
     3721 tcaataagga aggggcccct caaggggcat cacctatgga gcttttgctc atggccatag
     3781 gggggtgtaa tgctattgac ataatttatg ttttgaaaaa acaacggcaa accgtgcgcg
     3841 gttataccgt taaggtgacc ggggagcgcg cagcggtgga aaaggcaaat ccatttaaat
     3901 cggctagggt agaaatatat cttgaagggg atattgttcc cgccaaagca ttgcgcgcgg
     3961 ctgcgttgag ctttgaacaa tattgttcgg tatcgatgag cctgcggggc agcatgtcga
     4021 tagactacgc tgtgtttgtc aatggggaaa aagtcacgca ttctgagtaa tgcatttttc
     4081 aacacccgat aatcaatcct cgagcacctg gggccaagac cacgggccaa gtaaatcagc
     4141 cctgctggat gttgctgccc gaatcaagcc atggattcat cgcactccag tggcgacctc
     4201 acgctattta aatgaactca gtggggccgc gctctacttt aaatgcgaac aactgcagcg
     4261 catgggggca tttaaaatgc gtggtgcggt tagtgctata gccgcactca ccgatcaaga
     4321 gcgcgcacga ggtgtggtga cccattcttc tggtaatttt ggtcaggccg tggctttagc
     4381 gtcaaaaatc atgggtataa aggcctatgt ggtgatgcct ttaggcacgc caaaagtcaa
     4441 gcgtgacgcc gtattatcct atggggccga ggtcacagat tgcgcgccaa atttatgggc
     4501 tcgtgagact gctactcaag agattatcaa taaaaccgga gccactgcgc ttcatccttc
     4561 caatgctatg gaggtcatcc taggcaatgc gacggccacc atggagcttt tagaggaagt
     4621 gccagattta aatggtgtaa tggcgccagt gggcggtgga ggtcttttgg caggaaccgc
     4681 attggctacc gcacattttg gccataattg ccactgttgg ggtgcagagc ctgcggctgt
     4741 cgatgatgcc tttcgttctt tgaaaatggg ttcgattcag accaatgatc aaaccaatac
     4801 catcgccgat ggcttaaaaa cacaattagg ctccattaat tttcccatta tccaaaatgg
     4861 tgttgcgtcc attttttgcg tcgatgagtc cgagattatc gcgtctatgc gccttttatg
     4921 ggagcgtact aaaatggtgg ttgaaccatc gagtgctgtc gctctggccg ccgtattaaa
     4981 atatcccgcc cagtttagcg gcaaaaaaat tggcctaatc ctctcaggag gtaacgtgga
     5041 tttaagtcag ttgcccttct gagttcatca aggttaggct tggtttttag tgacttgagc
     5101 cacataaatt aatgccgtat atttggggcc tttatcgagt catgagatac aattggtggt
     5161 tgttgatttt tggagttttg agcccgatgt tgttggcaca acaaagggag ctaaagccct
     5221 atgccattga gctcgattat tattatggca gtattttaga acacaattct gatatcgcgc
     5281 acctaattac gggacatccc accgggttta atctgattta caaccgcaag acttatggct
     5341 ataatgagtg ggagagccgt tataactatc ctgattgggg ctttaccttt aattatcaag
     5401 atatggggaa tccctatctg ggtaagaatt atggacttta cggtcatttt aactggtatt
     5461 tttggaagcg tcgtttgaga tttggtattg ggcaaggggt ggccatggca ggcaatccgt
     5521 atgacgctga ggataattat caaaatacgg cctacggaag tcgttttatg agcaccacat
     5581 ttttaaagtt taacctcata caagaaaata tttaccgggg cattggattt aagttaggga
     5641 ctggaatcat tcattactcc aatgcgaatt tcaaagcgcc aaataacagc accaatacgc
     5701 tttatttttc tgcgagat
//
LOCUS       DPUP01000239           14262 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2604,
            whole genome shotgun sequence.
ACCESSION   DPUP01000239 DPUP01000000
VERSION     DPUP01000239.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 14262)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 14262)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14262
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(106..696)
                     /locus_tag="DHV98_09245"
     CDS             complement(106..696)
                     /locus_tag="DHV98_09245"
                     /inference="COORDINATES: protein motif:HMM:PF00188.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06510.1"
                     /translation="MQIIRIKCCVIQKCAYLCHESSPKFDLPRIMKRVTYSLLALTLA
                     LTSCSTEELVETQSPIEFTIDLNLAQETDTQMASEILFYVNEYRGTIGLEPIIMDRTY
                     ASAYAVEHTKYMIQQNKISHDNFSDRAEGLNSQGAQAIAENVGFGYNSAKDLVTAWIN
                     SPSHRDTMEGNYTHSGIGALQDGSGVYYVTQLFYRK"
     gene            1065..1838
                     /locus_tag="DHV98_09250"
     CDS             1065..1838
                     /locus_tag="DHV98_09250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009185874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06511.1"
                     /translation="MEIIVISIVAFLVAILTFFSGFGLGTILTPVFMFFFPVELSIAL
                     TGVVHFFNNIFKIILVGRQANREALLKFGLPAVIAALVGSIILINIADAPALFTYSLG
                     ESLIEVSTVKFIISILLIIFASMDLIPFFRDLTFDKNKLPIGGVLSGFFGGLSGNQGA
                     LRSAFLIKSGLSKEAFIGTAVVVSTFVDFTRLSIYATRFSQAGLIDNLNLVICATLAG
                     ITGSFFGNRLLKKVTLKRLQTIVAIMLILVALGFGSGLI"
     gene            complement(2258..2440)
                     /locus_tag="DHV98_09255"
     CDS             complement(2258..2440)
                     /locus_tag="DHV98_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008865203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06512.1"
                     /translation="MSFLNKYYPIVLAIFALIYSVFLWFSGSKLEGLYVGLWPVTILA
                     FTLVLEQIQNQNNSSK"
     gene            2657..2863
                     /locus_tag="DHV98_09260"
     CDS             2657..2863
                     /locus_tag="DHV98_09260"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06513.1"
                     /translation="MKKLLALFVLLTVATSCVIIRFPETMHVDVKVPEDFTQKDVEVI
                     IDTLKNGKLEGVIQVKINKKSEDQ"
     gene            complement(2918..3232)
                     /locus_tag="DHV98_09265"
     CDS             complement(2918..3232)
                     /locus_tag="DHV98_09265"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06514.1"
                     /translation="MKSEERLRDSQLNLAQNTLELSNKIQGLESTAEVVQKQSEIASI
                     LVSDYQILYRAEQVKFAQGESSLFLVNNRESKYIESILKQIKIQSEWVVAQADLYFNL
                     VF"
     gene            3355..4380
                     /locus_tag="DHV98_09270"
     CDS             3355..4380
                     /locus_tag="DHV98_09270"
                     /inference="COORDINATES: protein motif:HMM:PF08450.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06515.1"
                     /translation="MKLLLPLFSVVLLYSCSEPKKPNTGIEIYDTDIEEIIDVTASFE
                     VIADSIALPEGPVWDDSNQRLLFVDCLNDQIMQWTEKKGASKFIAPGGNTGYAPNLGQ
                     GVLGPNGLVIDNEGNLLVCQHGDRRVAIIENTTSEKPSYQTLVDNYQGLRLNSPNDLV
                     IGSDGSVYFTDPPFAFFDLSNFSFVATEMRELDFNGVYRYNRKTEDLTALSRDVSMPN
                     GLGLSPDERFLYVNSMGAPFSQSTPKIMRIDLSDMSQSIFFDGEELSKKYNDGTDFDG
                     MAIHSSGTIFTSGPGSLLVISPEGKLQARLNFGQITNCTFDAKENYLYVTGFVTNPKV
                     FRLKLKS"
     gene            4394..5158
                     /locus_tag="DHV98_09275"
     CDS             4394..5158
                     /locus_tag="DHV98_09275"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06516.1"
                     /translation="MSKRIHSERKIIKYTLEFLVVFLGILLSFGIDNYVKQRERINQK
                     NTLLIELRTSINEDQKQLIIVEDALNVCLEGFDLLIRDQKKPFLSDSAIVANISNVSA
                     KMAISFFPQTGIYNQLIQTESFELIESEDIKRSLSDLFEHLGERNNSANLKFDSFAQK
                     FDLVLTDKLFYRLVIQEVNNSVDLNTEITDFFISKNYQNHPEIIGMLTNGEKRVYFYK
                     ELLKKYDQLMKTAIVQLDDYLLKRNIGSQTKDMYKS"
     gene            5191..>5553
                     /locus_tag="DHV98_09280"
     CDS             5191..>5553
                     /locus_tag="DHV98_09280"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06517.1"
                     /translation="MKQLITLLLMSMTFVGCNQANENALIKSEFHSGTVETQDPKSMA
                     MNAFNDAYLANDMTGQEVIFTADALALVNGVEMTPAQLMAGFLEGRTFYSDITQSNRA
                     TGTFYLDNGDVYTNTWFKW"
     assembly_gap    5554..5635
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            5797..6663
                     /locus_tag="DHV98_09285"
     CDS             5797..6663
                     /locus_tag="DHV98_09285"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06518.1"
                     /translation="MKSIIALFSLTMILSCAQPYAKIDVQDTKSQMVAKIFEEVSEER
                     IDYLKEIFSDSMKMVNAKELSFDKTQFIAGIEDMFDLFEDISFEAVDGDANGSEIETN
                     YYENGRVWTSVWNNFSATGAYTGQKINFPFHLSYLWDGDKIIEEYQFFDLSQFENEAN
                     ARASMNNTNTKVGFVLELGINPGYTPDDVASMLAKFTTFMRTNEPDGYDYGYYISEDE
                     KSITLIEKYRTSEAALLHADNFENGPNIEPFMKAFTINSFVLFGNASEELKARVKAYG
                     AEHREIIGGWTN"
     gene            6686..7096
                     /locus_tag="DHV98_09290"
     CDS             6686..7096
                     /locus_tag="DHV98_09290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06519.1"
                     /translation="MKKFKTIFLVTLILNILGALPLFLMPFMPAIKEELVFTQFEGMA
                     NNALAIEIWDLFNSVLAFMVGAILVVNFIGIKSKSIEAARTTALVLLVLLIGFTLPDW
                     INLFQGAGHPPLLIMALNLVPLVLLEYGRRNAEL"
     gene            complement(7289..7471)
                     /locus_tag="DHV98_09295"
     CDS             complement(7289..7471)
                     /locus_tag="DHV98_09295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008865203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06520.1"
                     /translation="MEFLKKYYPILLAFFSFLYSISLWFTGNELEGLYVGLWPVTILA
                     FAIAIRQRRNEDKNQG"
     gene            7480..7989
                     /locus_tag="DHV98_09300"
     CDS             7480..7989
                     /locus_tag="DHV98_09300"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06521.1"
                     /translation="MFLRKIEDLIELILMTVLKEIIKFFVRYPIFIVLLVLSCQKPEP
                     SEAGVPPSDARIIERKTIDIQDNVSRVIFDYSIDPELGLNQMKAPAQWTESFIEIDFE
                     LRGIVLKGTLGLKFADTTLRITKNNGFHIPKGSQLRIFNAGVDSLHLIEVLRPAYQES
                     LVRKLNTFE"
     gene            7997..8674
                     /locus_tag="DHV98_09305"
     CDS             7997..8674
                     /locus_tag="DHV98_09305"
                     /inference="COORDINATES: protein motif:HMM:PF13460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation protein B"
                     /protein_id="HCK06522.1"
                     /translation="MSKKENIAVLFGGTGLIGGYLLEELIKDSQIDKIILVGRREPTI
                     DHFKLSHKTIDLNDISQIADCISKDSIVFSAIGATATAVSGDLKTYRSVDYDITLNIA
                     RSCQVNKARRFLYVSSSGANAGSKNFYLGLKGEIDDQVTALNLASAVILRPSLLLGKR
                     KELRFWEKIGQIIMPLLTALLPARLHPVKAQTVARFMIILAKSKYSGTTIIENPRILE
                     LRPKGSL"
     gene            complement(8705..9493)
                     /locus_tag="DHV98_09310"
     CDS             complement(8705..9493)
                     /locus_tag="DHV98_09310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016200403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isomerase"
                     /protein_id="HCK06523.1"
                     /translation="MSRAKCYTINGFSEDHKGGNPACVIPLEGWLEADHMQAIAKEMG
                     LAETAFFVPEKDGFALRWFTPDLEIDLCGHATLAAAHCIKIHLGYREPVVKFYSKSGV
                     LSVRFERNKYVLDFPSRPGVPADLPEIISKALSHQPLEVYKARDYLLIYSRQKDVEAL
                     TIDRAAFDQINLGTGGVIVSAPGISHDFVSRFFTPQATILEDPVTGSAHCTLTPYWAA
                     RLKKSSLMARQCSARGGELECLDQGDRVFINGHAVTTHESSIQA"
     gene            9635..10162
                     /locus_tag="DHV98_09315"
     CDS             9635..10162
                     /locus_tag="DHV98_09315"
                     /inference="COORDINATES: protein motif:HMM:PF07366.10"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06524.1"
                     /translation="MKKLMIALLGLVTLISCQNNDYRAEFEKNTETAKAYFKLHESED
                     AQAMFEYLHPDMEWHMPVYGTPLVGIDEVKAAVQGYQDAFDDMSFVADYWLPGVNTET
                     GMPDGSTRVYGTWNATHSETGVKVALTAYHSFEFKDGKIHRGGDWFDLGGMMNFIAQE
                     ASANADTEDAAMDQE"
     gene            complement(10209..>10302)
                     /locus_tag="DHV98_09320"
     CDS             complement(10209..>10302)
                     /locus_tag="DHV98_09320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009162433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HCK06525.1"
                     /translation="NMIVSCGIRKPEGVYGERFRIPFEAIYRHQ"
     assembly_gap    10303..10467
                     /estimated_length=165
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<10468..11053)
                     /locus_tag="DHV98_09325"
     CDS             complement(<10468..11053)
                     /locus_tag="DHV98_09325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015481062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HCK06526.1"
                     /translation="MKDEKTVSEAIEYRWSIRVYDPDQPLDTELVKRCIEQAALAPNS
                     SNMQLWEFIHITDKALIKDIAPLCFNQNAARTAQQLVVFVTRKDLWRNRAQANLDMIN
                     RLYPDKPKSEQSRRERVIRTYYGKLIPNVYFDFLGLYGWLKYLMVLVTGLFRPIYREV
                     RAKDMRVVVHKTCALAAQNFMISMAAIGYDTCPME"
     gene            complement(11101..11586)
                     /locus_tag="DHV98_09330"
     CDS             complement(11101..11586)
                     /locus_tag="DHV98_09330"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06527.1"
                     /translation="MNSNNKILSYIIIGIVLIWALSGVLTMIYLDEWSDRGTFGDLFG
                     AINSLFSGLALAGLIYSIYGSRQEIQLQREEIELNRKELIKSRKTQEKSEKSLEAQVA
                     QMRIASKLSGINTLITYYSGVISNPEKPEDIREKAREQRRALIKEIDDLIDRLGDEEL
                     E"
     gene            complement(11665..>11987)
                     /locus_tag="DHV98_09335"
     CDS             complement(11665..>11987)
                     /locus_tag="DHV98_09335"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06528.1"
                     /translation="MNSIEETLPSGLSIEKSFGVNDLLEQLGNDLMRLSGSSALNRNL
                     QLNWILQLQELSQDKDLSPVVASLVASAMSQTRAEVKSKRKKGTNIEQAHYQYAFELL
                     SKDN"
     assembly_gap    11988..12066
                     /estimated_length=79
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<12067..14131)
                     /locus_tag="DHV98_09340"
     CDS             complement(<12067..14131)
                     /locus_tag="DHV98_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019037084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent metalloprotease"
                     /protein_id="HCK06529.1"
                     /translation="MRSIKIYLAAWTLLSFGIIEAQSGESIIIPGPNSIDSLTAGYPK
                     SKGFIQSFFKAEKDKLMWAIPDSIIGRDLLMVTRFTQLPADYSGYTNAGSKTAERVVR
                     FEKRPGSLVLREHSFVNIADTEDPIAESVQANNFAPILAVFDIENDDTNLYLIDVSEY
                     FSEDSPGFNIINESNKKEYKIGSLDKSRSFIDQCRSFPQNVEIRHTLTFKVGEPPRGN
                     RTGTFSFQMNHSLVLLPKEPMQMRLADHRVGWFTLKKIDYSSQALKSDDFQVAVRWRL
                     EPKDLEAYKRGALVEPKKPIVFYLDPATPLKWRPYFKQGIEDWQQTFESAGFKNAIIA
                     KDPPSLEEDPDFSPEDVRYSTVRYVASTTRNAVGPSVKDPRSGEIIESDVIWYHNHLR
                     SYRNRYLLETGAANPKARTLETPEEEIGEMMRRVIAHEVGHALGLPHNMKASSAYPVD
                     SLRSGDFTXKMGIATTIMDYARYNYVAQPGDENIRFVRQIGPYDHYAIDWGYRYFDDA
                     DVTQVDQKLKALVDEKSLDPIYMFGGRGNDPNAQTENIGDDPVKATDYGLKNLKIVAK
                     NLDQWTTPQGATYGDLEELYGELLSVYSRYINHVAAVVGGVYETRSNKGQSAVPYQTV
                     PQAEQKRALNFLNQELWNNPSWLMPKMLVSKFSDDGVLDRVSSIQNRVLKRMLSTKRL
                     NAMNSI"
BASE COUNT         4153 a         2900 c         2692 g         4189 t
ORIGIN      
        1 ctggattgat tgccagatga tgtaaggatt aaaaaaaggc ccgctaatcg ccccactccg
       61 atgagttttg gcgacgcggg cccaaccttc cgaataaata gaaacctatt tgcggtaaaa
      121 aagttgtgtc acgtaataca ccccagagcc atcttgtaaa gcaccaatac cactgtgcgt
      181 gtagttgcct tccatcgtgt ctctgtgtga tggactgttg atccaagccg taactaaatc
      241 cttagctgaa ttatatccaa aaccaacatt ctcagcaata gcttgagcgc cttggctatt
      301 taatccctca gcgcgatcac tgaaattgtc gtggctaatt ttgttttgtt gaatcatata
      361 cttagtgtgc tcaacagcat aagcagaagc gtaggttctg tccatgataa ttggctctag
      421 tcctatagta cctctgtact cgttaacata aaatagaatc tcactagcca tttgagtatc
      481 ggtctcttga gccaaattca aatcgatagt gaattcaatg ggggattggg tttcaacaag
      541 ctcctcagta gagcatgatg ttagggcaag ggtcaaagcc aaaaggctgt aggttactcg
      601 tttcattatt cgaggtaaat caaatttggg gcttgattca tgacaaagat acgcacattt
      661 ttgaatcacg caacacttta tccgaattat ttgcatttca tcgatgaaat aaggcgtttt
      721 ttaaattacg ttttttgact ataatatatt tatttcattg gctttcagtt atttatacta
      781 agaataaagg ctcatttatt acttcaaaaa aaaattaaaa tattttgtat tttatcgtta
      841 ttaaatgctt tttatcgaca ttttatatct ttttttgatt ataatcttgt ccgaaaaatg
      901 cagttattgc cactttatta aacctggagg aaacctttta tacctccctt tgctcttcca
      961 ttcaatggtt cctaggaaaa cattatagat gtatttgttt tttttgttaa ttcgtgtgga
     1021 acaaactcaa ggcgccccaa aaatattttg aacacactcc cttcatggaa atcattgtta
     1081 tttcgatcgt tgcattttta gttgccatat tgaccttctt ttctggtttt ggattaggca
     1141 ccatcctcac ccctgtgttt atgtttttct ttcctgttga actttccata gcattaaccg
     1201 gggtagtcca ttttttcaac aatattttta aaatcatcct ggtagggcgt caagcaaatc
     1261 gagaagcttt actgaaattc gggcttccag ccgtaatcgc tgctttggtt ggttccataa
     1321 tattgatcaa tattgcggat gccccagccc tatttaccta ttcattgggc gagagcctca
     1381 tcgaagtatc tacggtaaaa tttatcatat caattctctt aattattttt gccagtatgg
     1441 acctcatccc cttttttcgc gatttgactt ttgacaaaaa caaactaccc atagggggtg
     1501 ttttaagtgg attttttggg gggttatcgg gcaatcaagg ggccttgcgc agtgcctttt
     1561 taattaagtc tggcctttca aaagaagcct tcataggaac ggcagtggtg gtctcgacat
     1621 ttgtagattt cacacgtctt agtatttatg caacccgctt ttcacaagcc ggtctgatag
     1681 ataatctaaa tttagtgatc tgtgccactc ttgccggaat cactggttct ttctttggca
     1741 atagactgtt gaaaaaagta accttgaaaa gattgcaaac gatagtcgcc attatgctca
     1801 tcctcgttgc ccttggtttt ggctcaggac tgatttaatt tccttaaatt agccttattc
     1861 aggagtattt atccaagtaa gttcggcata ccattagact ccattgaagc aaaagactcc
     1921 atggggtaag agaaattata cgaataagtg gaattaaaaa caaaaatcga tgtggggcgc
     1981 gaataaatgg accgatcaaa tgtttaagaa atattggtgg gctgttctga ttttggccct
     2041 gctctatcta attgtgaagt ttgcctgaaa atgaattacc cgagtgtaaa aaattaactt
     2101 aagggccaat ctttcttatc gatatcctca acgtattgat ccaggtcttg gttctgattg
     2161 cgttcaatac gctcttgagc tgcttttgtc gtccacataa aatatacgta gatcgccaaa
     2221 atgatgaagc cgtatgtaaa cattaaacca ctttccatca cttcgagcta ttattttggt
     2281 tttgtatttg ttccaaaact aatgtaaatg cgagaatagt aacgggccat aatcccacat
     2341 ataacccttc aagtttactt cctgaaaacc acaagaacac cgagtagatc aaggcaaaaa
     2401 ttgccaaaac aatcgggtag tacttattaa gaaaacttat gcaataatat ctaatggaaa
     2461 attaagtaaa atttaggtga tttcaacttt ttgtgcgcac tgtaattggt tcttacacta
     2521 accaaaacct gacttttagc tcatctgaaa agttaaaaat gttaatagta aatacagaaa
     2581 tctcataacg catatctttg tgataaagat agacattgtc ctaattaata atttgttaat
     2641 acctgattcg agtcctatga aaaaattact tgcgctcttt gtattactta ctgtagccac
     2701 ctcttgtgtc atcataagat tccccgagac catgcatgtc gacgttaaag tgcctgaaga
     2761 ttttactcaa aaagatgttg aagtgatcat tgacacccta aaaaatggca aattagaagg
     2821 agttattcag gtgaagatca acaaaaagtc agaagaccag taacacaaga tttatcttgc
     2881 aatctggcgt gcggcccaat taggccccgc acaatagcta aaacacaagg ttaaagtata
     2941 aatctgcctg ggcgacgacc cactcagatt ggatttttat ttgttttaaa atggactcga
     3001 tatactttga ttctcgattg ttaaccaaaa acaaagaact ctcgccttga gcaaatttga
     3061 cctgttcagc tcggtataaa atttgataat cactgactaa tatactggct atttctgact
     3121 gtttttgaac gacttctgcc gtagactcca agccctgaat tttattactc aattctaacg
     3181 tgttttgggc caaattgagt tggctgtctc tcagtctctc ttctgacttc atgccgcaat
     3241 tctaataagc tttaggcaaa cttttttctt aataaagcca ttttgttttt gtaataataa
     3301 aagcttggct ctaagcacag aaaaatttat attgcaatat aaaacaaacc taacatgaaa
     3361 ctacttcttc ctttatttag tgtcgtttta ctgtactctt gtagcgaacc gaaaaagccc
     3421 aacactggta ttgaaattta tgatactgac atcgaagaaa tcatagatgt tactgcctct
     3481 tttgaggtga ttgccgactc gattgcctta cctgaaggcc ctgtatggga cgactctaat
     3541 caacgattat tgtttgttga ttgtctcaat gatcaaatca tgcaatggac agaaaagaaa
     3601 ggagcctcta aatttatcgc tccaggcggc aacacgggat atgcccctaa tctaggtcaa
     3661 ggggtgttgg gacctaatgg tttagtgatt gataatgagg ggaatcttct tgtatgccaa
     3721 catggagatc ggcgcgttgc cataattgaa aacaccactt ccgaaaaacc gagctaccaa
     3781 acacttgtcg acaattatca gggacttcgt ttaaatagtc cgaacgactt ggttatcgga
     3841 tctgacggtt cagtttattt cacagaccct ccattcgcat tttttgattt aagtaacttt
     3901 agttttgtag cgactgaaat gcgagaatta gactttaatg gtgtctatag atataataga
     3961 aaaacggagg atttaacggc tctgagtcgt gatgtttcaa tgccaaatgg gctggggctt
     4021 tccccagatg agcgttttct atacgtaaat agtatggggg cgcctttttc tcaatctaca
     4081 cccaaaatta tgagaatcga tctctccgac atgagtcaat ccatattttt tgatggcgaa
     4141 gagctctcaa aaaaatataa tgacggaaca gattttgacg gcatggcgat ccattcaagc
     4201 ggcacaatat ttacctcagg tccaggtagt cttttggtta tttctcctga aggtaaactt
     4261 caagctcgtc tgaattttgg tcaaattacc aattgcactt ttgatgcaaa agaaaactat
     4321 ttatatgtta ctggatttgt cacaaatcct aaagtttttc gtctaaaatt aaagtcataa
     4381 tccactattg acaatgagca aacgcataca tagcgagcgg aagattataa aatatacact
     4441 agaatttctg gttgtttttt tagggatttt attatccttt ggcattgaca attacgtaaa
     4501 acagcgcgag cgtatcaacc agaaaaacac gctgttaatt gagttgcgca catcaataaa
     4561 cgaggaccaa aaacaactga taattgtaga agacgcccta aatgtttgtc ttgaaggctt
     4621 tgatttactg atacgcgatc agaaaaaacc gttcttatct gattcggcga ttgttgccaa
     4681 tatatccaat gtttcggcta aaatggccat ctcatttttt cctcaaacag gaatatacaa
     4741 tcaactcata caaactgagt cattcgaatt aattgaaagt gaagacatca aacgcagcct
     4801 ttccgattta tttgaacatt taggagaacg aaataattct gcaaacctaa aattcgactc
     4861 ttttgcccaa aaatttgacc ttgtcctgac ggataaatta ttttatcgtt tggtcattca
     4921 agaggtcaat aactctgtgg atttaaacac agagatcaca gattttttta tttccaaaaa
     4981 ctatcaaaac caccccgaaa ttattgggat gctcactaac ggagagaaga gagtctattt
     5041 ttataaagag ctccttaaaa aatatgatca attaatgaaa actgcgatcg tacaacttga
     5101 tgactaccta cttaaaagaa acattggcag tcaaactaag gatatgtata aatcttaata
     5161 ttaaataatt ttcaatctaa actattcatt atgaaacaat taatcacttt acttttaatg
     5221 tcaatgactt ttgtcggatg caaccaagcc aacgaaaatg cattgataaa atccgaattt
     5281 cattcaggta ccgtcgaaac acaagatcca aaatccatgg ccatgaatgc ctttaatgat
     5341 gcctacctag caaacgacat gaccgggcaa gaggtaatat ttacggcgga tgctttagcc
     5401 ttggttaatg gtgttgagat gactcctgcc caattaatgg cgggatttct cgaaggacgc
     5461 accttttata gcgacattac acaatccaat cgagccacgg gaacctttta cttggataac
     5521 ggggatgttt acaccaacac ctggtttaaa tggnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnntccag
     5641 tacacgcgtc ctttaagtgg gatggtgata aggtcgctat cgtcagtttt ttatatgact
     5701 cacatgatta tgtggtaaat atggcaactc ccgaagaaga atagtccaat acagaagcat
     5761 tttagttaaa catatctcta atctaaaaaa taaattatga agtcaattat tgcccttttt
     5821 agtttgacca tgattctttc atgcgcacaa ccttatgcca aaatcgatgt ccaagacacc
     5881 aagtctcaaa tggttgccaa aatctttgag gaagtctcag aagaacgcat tgattatctc
     5941 aaagaaatat tctcagacag tatgaaaatg gtcaacgcca aagaattgag ttttgacaaa
     6001 actcaattta tagcgggcat tgaagatatg tttgaccttt ttgaagacat ctcctttgaa
     6061 gcagtcgacg gtgatgctaa tggctcagaa atcgagacta attattacga aaacggacgt
     6121 gtatggacct ctgtctggaa taatttctcc gccacaggtg cttacacagg tcagaaaata
     6181 aacttccctt ttcatttgtc ttatctctgg gatggagaca agatcatcga ggagtatcaa
     6241 ttttttgatt tgagtcaatt tgaaaatgaa gccaacgcgc gtgccagtat gaataatacc
     6301 aataccaagg taggcttcgt tctagaattg gggatcaatc caggttacac cccagatgat
     6361 gtggcaagta tgctagcaaa attcacaacg ttcatgcgga ccaatgaacc cgacggatac
     6421 gattatgggt attatatctc tgaagacgaa aaaagcatca ctttaatcga aaagtatcgc
     6481 acttctgaag ctgccttgct ccatgctgat aacttcgaaa atgggccaaa tattgagccg
     6541 tttatgaagg catttaccat taactcattt gtgcttttcg ggaatgcctc agaggaatta
     6601 aaggcccgag tgaaggctta tggagcagaa catagagaaa tcattggcgg atggacgaat
     6661 taaaacaacg taaaccaaac gaattatgaa aaaatttaaa accatttttt tggtaaccct
     6721 gatactcaac atacttggag cattacctct atttttaatg ccttttatgc ccgcgatcaa
     6781 ggaagaatta gtttttacgc aatttgaagg catggctaat aacgccttag cgatagagat
     6841 ttgggattta tttaattctg tactcgcatt tatggttggc gcaatccttg tcgtcaattt
     6901 tattggcatc aaaagtaaga gtatagaggc ggcaagaact acggccctag ttttactggt
     6961 tctgttgatt ggattcacat tgccagattg gattaattta tttcaaggag cagggcatcc
     7021 tcctttgctt attatggcgc taaacctagt cccactagtc cttttggaat acggacgacg
     7081 aaatgcagaa ttataaacat caattaccga ggattcgata aaaaacaggt caattattca
     7141 ttgacttgtt ttttattttc cgagctttta taggcagatt tgtgctcttt acgctgaatg
     7201 cgatgttgtt ttacaataat cgacagtaag aaatagatat agacgacaaa aattaccgca
     7261 ccaataataa acattattat attttgcatc atccttgatt tttatcttca ttgcgtcttt
     7321 gacgaattgc tatggcaaat gcgagaattg tgaccggcca taacccaaca tataatccct
     7381 ctaactcgtt ccctgtaaac cacaatgata ttgaatacaa aaagctaaaa aaggcaagaa
     7441 ggatagggta gtattttttt aaaaattcca taagtctaga tgtttttacg gaagatagag
     7501 gatttaatcg aattgattct tatgactgta cttaaagaaa taattaaatt ttttgtgaga
     7561 tatccaatct tcattgtgct tcttgttctt tcgtgccaaa agccagaacc aagcgaggcg
     7621 ggggtaccgc cctctgatgc ccgaataatc gagcgaaaaa ccattgatat tcaggataat
     7681 gtatctagag tcatttttga ctattcaatc gacccagaac ttggcctgaa ccaaatgaag
     7741 gctcctgccc aatggacaga atcatttatt gaaatcgact ttgaattaag gggaatcgtt
     7801 ctcaaaggaa cgctcgggct caaatttgct gacactactc tacggattac aaaaaataat
     7861 gggttccaca ttccaaaggg gtcccaattg cgtatcttca atgcaggagt tgacagtctg
     7921 cacctcatcg aggtactcag gccagcctat caagaatctc ttgttcggaa actgaatact
     7981 tttgaataga acgacaatgt caaaaaaaga aaacattgcc gtattgttcg gtgggacagg
     8041 actgatcggc gggtaccttt tggaggaatt aattaaagat tcacaaatcg ataagatcat
     8101 tttggtggga cgtcgggagc ctacaataga tcattttaaa ttaagccaca aaaccattga
     8161 cctaaatgac atctctcaaa tcgctgattg tatttctaag gattccattg tattctcagc
     8221 tattggtgcg accgcaaccg cagtctcagg agacctaaaa acctatcgat ctgtggatta
     8281 cgatataacc ttgaatattg ctcgttcttg tcaagtcaat aaagccagac gatttttata
     8341 tgtttcctca agtggggcaa acgccggaag taaaaatttc tatctagggc tcaaaggtga
     8401 aatcgacgat caagtaactg cactgaatct agcctctgca gttattttac gaccgtcgtt
     8461 actcctggga aagcgaaaag aattacgttt ttgggaaaaa ataggtcaaa taattatgcc
     8521 tcttctcaca gcgctgttgc cggcacgatt acatccggtt aaggcgcaaa ctgttgcccg
     8581 ttttatgatt attctggcca aatcaaaata ctctggcaca acaataattg aaaacccgcg
     8641 aattctcgaa ttgaggccaa agggatctct ataatgtaag gtagtgaaga ttcgtgcggc
     8701 taaattacgc ctgaatgctg gactcatgtg tcgttacagc gtgaccatta ataaacacac
     8761 gatctccctg atccagacat tccagttcac cccctcttgc cgagcactgt cgcgccatta
     8821 aacttgattt ttttaatcgg gcagcccaat aaggcgttaa agtacaatgt gccgatccag
     8881 taacagggtc ttcaagaatc gtcgcctgag gcgtaaaaaa tcgggagaca aaatcatgag
     8941 atattcccgg agcagaaaca attaccccgc ctgtccccaa attaatttga tcgaatgcgg
     9001 cccgatcaat ggttaaagcc tctacgtctt tttgtcggct atagatcaaa agataatcgc
     9061 gtgctttata cacctcaagg ggttgatggc tcaaagcttt ggaaatgatc tctggcaaat
     9121 cagccggcac cccaggtcga gagggaaaat caagtacgta cttattccgc tcaaaacgca
     9181 cagataatac cccgcttttt gaataaaatt taacaactgg ttctcgataa cccagatgga
     9241 ttttgatgca atgggccgca gccagagtgg cgtgcccaca caaatcaatc tctagatctg
     9301 gagtaaacca tctcaatgca aagccatctt tttcgggaac gaaaaaagcc gtctccgcca
     9361 agcccatttc tttggcaatc gcctgcatat gatcggcctc taaccaacct tctaacggaa
     9421 tcacgcaggc gggattaccg cctttatgat cttcagaaaa accgtttata gtatagcact
     9481 tcgctcgact catgagtaaa aaatattttt gatcatactg agattaagtc atggacaatt
     9541 aatcaagcca aagtaaatct aaaagctcaa tatatttggt gatttatcca atcttttctt
     9601 aaattgttgc aattaacaat taaaacaacc caacatgaaa aaattaatga ttgccctatt
     9661 agggctagtc acactgattt cttgtcagaa caatgactat cgggcagaat tcgagaaaaa
     9721 taccgaaact gccaaagcct attttaagtt acacgaatct gaagatgccc aagccatgtt
     9781 tgaatattta catccagata tggagtggca catgccggtt tacggtactc ctttagtcgg
     9841 aattgacgag gtcaaagctg ccgttcaagg ttatcaagac gcatttgatg acatgtcatt
     9901 tgtggccgat tattggttac ctggagtaaa tacagagaca gggatgcctg acggcagtac
     9961 ccgagtttac ggtacatgga acgccacaca cagcgaaaca ggcgtaaaag tagcccttac
    10021 ggcctaccac tctttcgaat ttaaagatgg taaaattcac cgaggtggag attggtttga
    10081 tctaggcgga atgatgaatt tcatcgctca agaagccagc gccaatgcag acactgagga
    10141 cgccgctatg gaccaagaat aaaaaattcc tcatcaacat tcaaccccgc gatttatggc
    10201 ggggtttttt attgatgtcg ataaatagcc tcaaaaggta ttcgaaagcg ctcgccataa
    10261 acgccctcag gcttgcgaat tccacagctg acaatcatat tgnnnnnnnn nnnnnnnnnn
    10321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    10441 nnnnnnnnnn nnnnnnnnnn nnnnnnncct ccatgggaca ggtatcgtag cctatagcgg
    10501 ccatactgat cataaagttc tgagccgcta gtgcgcaggt tttatgaacc accacgcgca
    10561 tatccttggc ccgtacctct ctgtatatgg ggcggaataa tccagtgacc agcaccatga
    10621 gatacttgag ccatccataa agacctaaaa aatcgaagta aacattcggg atgagcttgc
    10681 cgtaataggt ccttataacc cgttctcttc tactttgctc agatttgggc ttatcgggat
    10741 aaagcctatt gatcatatcc agatttgctt gagcacggtt gcgccataaa tcttttctgg
    10801 ttacaaaaac tacgagctgc tgtgccgtgc gtgctgcgtt ttgattaaaa cacagcggtg
    10861 caatgtcctt aatcagtgct ttatcagtaa tatggataaa ctcccaaagt tgcatgttgc
    10921 tgctgtttgg ggcaagagct gcctgttcaa tgcaacgttt tacaagttcc gtgtccaaag
    10981 gctggtctgg gtcataaacg cgaatggacc agcgatattc tatagcctca gagactgtct
    11041 tttcgtcctt cataaactca tttgaatttt gttttacccg aactcatttt gattgccgga
    11101 ttattcaagc tcttcatcac ccaatcgatc gatcaagtca tcaatttctt tgatcaacgc
    11161 gcgcctctgc tctctggctt tttcacgaat atcttcgggc ttttctggat ttgaaataac
    11221 ccctgaataa taagttatca atgtgttgat tccacttaat tttgaagcga tgcgcatttg
    11281 ggccacttgt gcttccaatg acttttccga tttttcttgg gttttacgac ttttgatcaa
    11341 ttccttgcgg ttaagttcga tttcttcacg ctgtaactga atctcttgtc gactcccata
    11401 tattgagtaa atcaagcctg ccaaagccaa accagagaac aatgaattta tggctccgaa
    11461 taagtctcca aaggtacccc ggtctgacca ctcgtcaaga taaatcatag ttaacacccc
    11521 tgacaatgcc catataagga caatcccaat gatgatatag ctcagtattt tattattgga
    11581 attcatgaat caatgtatct gtttgacctt tgaaaatttt taaaatgtac ttacccaata
    11641 caatttttaa ataggcttta atcattaatt atcctttgac aataattcaa aggcatattg
    11701 ataatgggcc tgttcaatgt tagttccttt tttgcgtttg gatttgacct cagcccgggt
    11761 ttgactcata gcgcttgcaa cgagacttgc gacaacagga gagaggtctt tatcttgact
    11821 taattcctgt aattgtaaaa tccagttcaa ttgtaagttg cgattaagcg cagaagaccc
    11881 tgaaagcctc atcaaatcgt ttcctaactg ctcgagcaaa tcattaacac caaaggattt
    11941 ttcaatcgat aaaccactgg gaagggtctc ctcaattgaa ttcatcgnnn nnnnnnnnnn
    12001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12061 nnnnnncaat tgaattcatc gcgttaagtc gtttggtcga taacattcgt ttcaataccc
    12121 gattttgaat actggaaact cgatctaaaa ctccatcatc gctaaatttt gaaacaagca
    12181 tcttgggcat tagccaactt gggttattcc aaagctcttg gtttaaaaaa ttcaaagctc
    12241 ttttctgctc ggcctggggt acagtttgat aaggcactgc actttgtcct ttgttggaac
    12301 gtgtttcata tacacccccg accacagccg caacgtgatt tatatatcga gagtagacac
    12361 tcagcaattc cccatagagc tcctccaaat cgccgtaggt cgctccttga ggcgtggtcc
    12421 actgatctag atttttggcc acaattttta aattcttcag cccgtaatct gtggccttga
    12481 ccgggtcatc cccgatattt tctgtttgcg cattggggtc attaccgcgt ccgccaaaca
    12541 tatagatggg atcaagagat ttttcgtcga ccagggcctt tagtttttgg tctacctgag
    12601 tcacatcagc gtcatcaaag tagcgatacc cccagtcaat tgcgtagtga tcatacggcc
    12661 caatttgacg gacaaatcgt atgttttcat ctccgggctg agcgacataa ttgtaacggg
    12721 cataatccat gatggtggtg gcaataccca ttttttnngt aaaatcgcct gagcgcaaag
    12781 aatcaacggg gtaagccgaa ctggctttca tattgtgggg caatcccagg gcatggccta
    12841 cctcgtgtgc aatcacacgc cgcatcatct ccccgatttc ttcttctggg gtttctagag
    12901 tacgggcttt cggattggcc gcgccagttt cgagtagata tctatttcgg taggagcgca
    12961 aatgattgtg ataccagatt acatcgcttt caataatttc tcctgagcgt gggtccttga
    13021 cactgggccc gaccgcattc cttgtcgtcg aggccacata acgtacggtt gaataacgca
    13081 catcctccgg gctaaagtca gggtcctcct ctaggctcgg tggatcttta gcgattatcg
    13141 catttttaaa cccagcagat tcaaaggtct gctgccaatc ctcaataccc tgcttaaaat
    13201 aggggcgcca ctttagcggt gttgccggat ctaaataaaa gactatgggt ttttttggtt
    13261 caaccaacgc tccgcgcttg tacgcctcca ggtccttcgg ctccaatcgc caacgcacag
    13321 ccacctgaaa atcatccgac tttaaggcct gggaagaata atcgattttc ttcaatgtaa
    13381 accaccccac ccgatgatcg gccagccgca tttgcatcgg ctctttgggc aataagacaa
    13441 gggagtgatt catctgaaaa ctaaacgttc ctgttctatt tcctcgtggg ggttcgccta
    13501 ctttaaaggt caatgtatga cgtatctcca cattctgagg aaagcttcgg cactgatcaa
    13561 taaacgacct tgatttatcc aaactgccaa ttttatattc ttttttattg gattcattga
    13621 taatattaaa tccaggagaa tcttctgaga aatattcgga tacatcaatt aaatatagat
    13681 ttgtatcatc gttttctatg tcgaagacgg ccaaaatcgg ggcaaaatta ttggcctgaa
    13741 cggactccgc aatggggtcc tcagtatcgg caatattcac aaacgaatgt tccctaagca
    13801 ccagcgatcc aggtcttttt tcaaaacgca caacacgctc tgcggtttta ctcccagcgt
    13861 tagtataccc agaataatct gcgggcaact gtgtaaatct ggtgaccata agcaaatccc
    13921 gtccgataat actgtctgga atcgcccaca ttaatttatc cttttcggct ttaaaaaaac
    13981 tttggataaa ccccttggat ttgggatagc ccgcggtgag cgaatcaata gaatttgggc
    14041 cggggatgat gattgactcc ccactttggg cctcaataat cccgaaactt agcagggtcc
    14101 atgccgctaa ataaatttta atagatctca ttaattctgt tttaagtcca tatcgcaata
    14161 gtcgccatta atgaaaagcc cataagtatc aataataatt ttgacaactt tttttgatta
    14221 ttttcaaata gctcggcaat aatttccagg gtagcaatgt ac
//
LOCUS       DPUP01000240            4238 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_8467,
            whole genome shotgun sequence.
ACCESSION   DPUP01000240 DPUP01000000
VERSION     DPUP01000240.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4238)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4238)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4238
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            102..1217
                     /locus_tag="DHV98_09345"
     CDS             102..1217
                     /locus_tag="DHV98_09345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HCK06530.1"
                     /translation="MQVVDVLNLLDQWAPLTYSADFDNTGLLVGDPKSPLRGILVSLD
                     TLEVVVDEAIKEDCNLIVSFHPIIFSGLKSLVPKDYVNKAVLKAIKNDIAIIAIHTAL
                     DNVPHGVSATMAKVLGLENTRVLMPKEHLMYKLITYAPNQDAEIIRQALFSAGAGALG
                     NYQECSFNLSGTGTFKPLAGANPTLGQIGIQHSEQETQIQVSVLRHQKNDLIAALKKA
                     HPYEEVAYDLIPLDQACPEIGMGLIGTLSQGLSFETLLENVKSGFHTGCIKYSQNNLK
                     EINSVAVLGGSGSFAIDKAKALGAQVYITSDLKYHDYFKGHENFALLDIGHYESEQFT
                     KDLIVEYLSKKITNFAPSLPRVKVLKSNVKTNPISYY"
     gene            1223..2005
                     /locus_tag="DHV98_09350"
     CDS             1223..2005
                     /locus_tag="DHV98_09350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06531.1"
                     /translation="MAKKTETTVEEKLRALFDLQLIDSRVDEIRNVRGELPLEVEDLA
                     DEVAGLNTRLEKLKADLNMIEDGIKERKNLIEEAKALIKKYTGQQDKVRNNREYNSLS
                     KEIEFQELEIQLAEKQIREHQAQIEQKNIVIEETQERLTKRQEHLSHKQGELDEILAE
                     TEKEEQALLKESEKFAKEIEERLYNAYKRIRGNVKNGLAVVAIERGASGGSFFTIPPQ
                     VQMEIAGRKKIITDEHSGRILVDHHLADEEREKMEALFAKLK"
     assembly_gap    2084..2138
                     /estimated_length=55
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2184..2795
                     /gene="msrA"
                     /locus_tag="DHV98_09355"
     CDS             2184..2795
                     /gene="msrA"
                     /locus_tag="DHV98_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008635820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HCK06532.1"
                     /translation="MTINTGYKAQDFAQSIKRLEEMDQTALSKAYFASGCFWCVEAIY
                     ERLTGVVEVVSGYAGGHTPYPTYGASNTGLTGHAEAVVVYYDPNQIDFATLLQVYFAS
                     QNISQFNGQGPDHGSQYRSILFYQNQEQAELIDQQIKALEKQLGPGNVAAEVQAFDKF
                     WPAEDYHQDYEANHPYHPYIVNTSIPRLKRVMRTLPELFKKSE"
     gene            complement(2804..2983)
                     /locus_tag="DHV98_09360"
     CDS             complement(2804..2983)
                     /locus_tag="DHV98_09360"
                     /inference="COORDINATES: protein motif:HMM:PF09360.8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-binding protein"
                     /protein_id="HCK06533.1"
                     /translation="MSTEHVTQVNLIENGPVVVVGTIDLHHPDGTVERRERRSSFCRC
                     GKSASLPLCDGSHKN"
     gene            3114..>3361
                     /locus_tag="DHV98_09365"
     CDS             3114..>3361
                     /locus_tag="DHV98_09365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HCK06534.1"
                     /translation="MNDQTVQRAESLDKKDPLSSFGLEFEIPKDATGNKLIYLCGNSL
                     GLQPKQTKDYINQELDHWAQWGVDGHTKGNNAWLPYHEL"
     assembly_gap    3362..3530
                     /estimated_length=169
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3531..>4238
                     /gene="kynU"
                     /locus_tag="DHV98_09370"
     CDS             <3531..>4238
                     /gene="kynU"
                     /locus_tag="DHV98_09370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HCK06535.1"
                     /translation="THQMAQVVGGKDHEVVVMNTLTVNLHLMMVSFYQPSRQRHKIII
                     EADAFPSDRYAVESQIKFHGYDPEHSLLLWEPNPETGLCEMSGLEALLSEHDDSVALI
                     MLGNSNYYSGQVYPIKEITQLGHSYEAKVGFNLAHGAGNIICDLHDNDVDFAVWCTYK
                     YLNSGPGSLGGVFVHERHSASYDLPRFTGWWGHNKETRFKMRDGFDPIAGAEGWQLSN
                     PPILSMAAIRASLDIFDR"
BASE COUNT         1235 a          857 c          864 g         1058 t
ORIGIN      
        1 ggagctgcaa taatattcat tcacataggg ttatggtgta atttcgatcg cgacaacata
       61 acgaaagtat acttttttat ctttaccgta aaatttcact catgcaggta gttgacgtac
      121 tgaatttatt agatcaatgg gccccgctga cctacagcgc ggactttgac aatactggac
      181 tactggtcgg tgatccaaaa agtccgcttc gtggcatcct tgtaagttta gatacattag
      241 aagtcgttgt ggatgaagcg attaaagaag attgcaacct tattgtaagc tttcacccga
      301 tcatattctc aggcctaaaa tctcttgttc ccaaagatta cgtcaataag gccgtgctta
      361 aagccataaa aaacgacatt gctataattg ccattcacac ggcactggac aacgtgcctc
      421 atggggtttc tgcgaccatg gcaaaggtcc ttggccttga aaatacaagg gtcctcatgc
      481 ctaaagagca cctcatgtat aagctaatta cttatgcgcc taatcaagat gccgaaatca
      541 ttcgtcaggc ccttttttca gcgggcgccg gggccttagg gaattatcaa gagtgtagct
      601 ttaacctaag tggcacggga acgtttaaac ctttggctgg ggcaaatccg accttgggcc
      661 aaattggaat tcagcattct gaacaagaaa cccaaataca ggtgagcgtt ttacgccatc
      721 aaaaaaatga tttaatcgca gcattaaaaa aagcacatcc ctatgaagaa gtggcctatg
      781 atctcatacc gcttgaccag gcctgcccgg aaatcggcat gggattaatc ggcacattat
      841 cccaaggatt atcctttgaa accttacttg aaaatgtaaa atctggtttc cacactgggt
      901 gtattaaata cagccaaaac aatttgaagg aaattaattc tgttgcggtt ctcgggggca
      961 gtggcagttt tgctattgac aaggccaaag ctcttggcgc tcaagtctat atcacttcgg
     1021 atttaaaata tcacgattat ttcaaaggtc acgagaactt tgcccttttg gacattggcc
     1081 attatgagag cgaacaattc acaaaagacc taattgttga gtaccttagc aaaaaaatta
     1141 ctaattttgc accctccttg cccagagtca aggtgttaaa atcaaacgtt aagaccaatc
     1201 ctataagtta ctactaaact gtatggcaaa gaaaactgaa accacggtag aagaaaagtt
     1261 acgcgcatta ttcgatcttc aactcatcga ttcaagagtt gatgaaattc gcaatgtacg
     1321 tggagagtta ccccttgagg tagaggacct cgccgatgaa gtggctggtt taaatacgcg
     1381 cttggaaaaa cttaaagcgg atctcaatat gatcgaggac ggtatcaaag agcgcaaaaa
     1441 ccttatcgag gaggcaaaag ccttaatcaa aaaatatacg ggccagcagg ataaagtgcg
     1501 caacaatcgt gagtacaaca gcttaagcaa ggaaattgaa tttcaagaac tcgaaatcca
     1561 attggccgaa aagcaaattc gcgagcatca agcccaaatt gagcaaaaaa atatcgtcat
     1621 tgaggaaact caagaacgtt taaccaaaag acaagaacac ctcagccaca agcaaggaga
     1681 acttgatgaa atattggccg agaccgaaaa agaagaacag gcccttttga aagagtctga
     1741 aaaattcgcg aaagagattg aagagcgtct ttacaatgct tacaaacgca ttcgtggaaa
     1801 cgtgaaaaat ggcctggccg ttgtcgctat agaacgtggc gcttctggag ggtctttctt
     1861 tacaattcca ccacaggttc aaatggaaat tgcgggcaga aagaaaatta ttactgatga
     1921 gcacagtggc cgaattttgg tcgatcacca tcttgctgat gaagaacgcg agaaaatgga
     1981 ggccttgttc gccaagttaa aataatctca aaacgccttc ttagaaggcg ttttttttga
     2041 cctttacttc tttataaaaa tgactatgac gattcaaaga ctannnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnac tttgattttt ttgattcctt
     2161 ctttggccag ttgccaggac aaaatgacca taaacaccgg ctataaggcg caggactttg
     2221 cgcaaagcat taaacgtctt gaagaaatgg atcaaaccgc actcagtaag gcctattttg
     2281 cgagtggatg tttttggtgc gtcgaagcga tctatgaaag gcttacagga gtcgttgaag
     2341 tcgtctctgg ctatgctggg ggtcataccc cataccctac ttatggcgcg agcaatacgg
     2401 gtctcaccgg acatgccgaa gcggtcgtcg tctattacga tcccaatcaa atcgattttg
     2461 caaccctgct tcaggtgtat tttgcgtcac aaaatatcag ccagttcaat ggacaaggac
     2521 cggatcatgg ttcacaatac cgcagcatcc ttttctatca aaatcaagaa caagctgagc
     2581 tcattgacca acaaattaag gctttagaaa aacaactcgg cccaggtaat gttgctgccg
     2641 aggtccaagc ttttgacaag ttttggcctg cagaagatta ccatcaggat tacgaagcaa
     2701 atcacccgta tcacccgtat atcgtcaata cttctatacc acgattgaaa cgggtcatga
     2761 gaacacttcc agaacttttc aaaaagtcgg agtaattttc gaattaattt ttatgacttc
     2821 cgtcacaaag agggaggctc gcacttttcc cacatctgca gaaagagctt cggcgttcgc
     2881 ggcgctcgac agtgccatcg ggatgatgta aatcaatagt tccgaccacc accacggggc
     2941 cattttcaat taaatttact tgagttacgt gttctgtaga catagcattt tattttgtaa
     3001 aagcacaaaa ggctataagg ttaatttttt ctcgacttaa aaatagtaaa ttataggagg
     3061 acaagcgcat attccttaat tttagagcat atagtttcta ccttaattga ctaatgaacg
     3121 accaaaccgt acaacgggca gaatccctcg ataaaaaaga cccattatct tcttttggtc
     3181 ttgaatttga aataccaaaa gacgctacag gaaataaatt aatatacctc tgtggaaatt
     3241 ctttaggcct gcaacccaag caaaccaaag attacattaa ccaagagttg gaccattggg
     3301 ctcaatgggg tgtggatgga cacactaaag ggaacaatgc gtggttgccc tatcacgaac
     3361 tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gacccatcaa
     3541 atggcgcaag ttgtcggcgg aaaggaccat gaggttgtcg ttatgaacac cctaacagta
     3601 aatctgcacc ttatgatggt ttcgttttat caaccatcta ggcaacgaca taaaattatc
     3661 attgaagcgg atgcttttcc cagcgatcgc tatgcggtgg aaagtcaaat aaaatttcat
     3721 ggatacgacc ctgagcacag tttattgctg tgggagccta atccagaaac aggactctgt
     3781 gagatgtccg gactcgaagc cttattatcc gagcacgacg atagtgtggc ccttattatg
     3841 ttgggtaatt caaactacta ttccggccag gtttatccca taaaagaaat cacacaactt
     3901 ggccatagct acgaggccaa agtcgggttt aatttagccc atggtgcggg taatattatt
     3961 tgcgacctcc atgataatga cgtggacttt gccgtttggt gcacttacaa atacctcaac
     4021 agcggaccag gcagtttggg cggtgttttt gtccatgagc gccatagcgc gtcttatgat
     4081 cttccccgat ttacgggatg gtggggccac aataaagaaa ctcgttttaa aatgcgcgat
     4141 ggttttgatc ctattgcagg cgctgagggc tggcaactga gcaatcctcc tattttatca
     4201 atggcggcaa ttcgtgcttc tttggatatt tttgaccg
//
LOCUS       DPUP01000241            9054 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_12735,
            whole genome shotgun sequence.
ACCESSION   DPUP01000241 DPUP01000000
VERSION     DPUP01000241.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 9054)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 9054)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9054
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..188
                     /locus_tag="DHV98_09375"
     CDS             <1..188
                     /locus_tag="DHV98_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HCK06536.1"
                     /translation="PIILVGRAYWQGLYDWIKNTMAQERNISPDDLHLIELVDTEDEV
                     AQILTNFYDQFAISPNF"
     gene            196..3045
                     /locus_tag="DHV98_09380"
     CDS             196..3045
                     /locus_tag="DHV98_09380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease"
                     /protein_id="HCK06537.1"
                     /translation="MPAGLRPFLNRLILSLIFFLGATPLSFGQHKIALEVVLDTLNTE
                     LTINQEMLLVNATSNPLNAFYFLDWANSFSDKTSPLGQRFAENFEASFHFEKDEDRGR
                     TRIENWTINGEIADYERSAIDQIKLNLAQALMPGDSIKAQLRYKVKIPKDKYTRFGVD
                     NKGNYHIKYWWITPAAFDQSWVVYSNKNLDDFVMAPVQLKAKFQYPVHLGFKTDLDSI
                     SAEMVSLGSENSIQSIRANYQGKRQDAVPLHWFHKPEFQVYQTKHLSIITDFDLKKSA
                     AEIRQFQLDRIDAFLSEQLGPLQHERLMIDSRQYKLNPVYGLNQLPDFFNPFPAGFDQ
                     ELAFIKLISDQYLKRTLAINLRDHYWIRAGIQIYLLQEYVKRHYPNQKLLGSISRWPI
                     VRWSMLSDLDFNAQYRLVYLNGVRNNVHQPLGTSKDELINFNAKISNEYLAGVHMNLL
                     DQYLGKDTLKQRLKRLWSQNKRMINPNTFERILSDGQEDLSWYFKSFVNERTSNDFKI
                     SEVISRGDSLAVTLINKGKSNSPVPLSRYVNDTISGTIWTPPFEGKVTVSIPKYQTER
                     LVVNQSGTVPEINQRNNYAGVEKTYRRPLQLRLIQDIEDPNYRQIFMLPSVGYNLYDG
                     LSLGIRWYNRTILPKPLHYNFEPQYALRSNSMVGGGSFVYNDWNETSNLFLKRYGIAG
                     NYFSYDAGLFYRRLSPYAIFAFRDQSDLRKNQRQYVTLRSVHVTRDKSPEAAAREPNY
                     SVYNLQYNYSDNNLIDYYSADFNAQWSSAFTKVSAQFEYRKLFLSNRQINLRFFTGLF
                     LRNESPSDENYFSFALDRPTDYLFDYNYYGRSESSGIYSQQLIIAEGGFKSKLQPGFA
                     NQWISTFNSSVNLWRWIYLYGDLGLVKNKGDNARVVYDSGVRTSFVTDFFELYFPLWS
                     NLGFEPELDNYGSRIRFIATLDLQTLSRLFTRKWY"
     gene            3047..3274
                     /locus_tag="DHV98_09385"
     CDS             3047..3274
                     /locus_tag="DHV98_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013304469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06538.1"
                     /translation="MNILNNLRLILILCLTLGLAPYFPEPHIWGKIKWILGGGVGMKP
                     MDYFDFLFHGAPFFLLIRYVVLSGVKKDKNQ"
     gene            3390..5860
                     /locus_tag="DHV98_09390"
                     /pseudo
     CDS             3390..5860
                     /locus_tag="DHV98_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006987778.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
     assembly_gap    5600..5683
                     /estimated_length=84
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(5872..6800)
                     /locus_tag="DHV98_09395"
                     /pseudo
     CDS             complement(5872..6800)
                     /locus_tag="DHV98_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295402.1"
                     /note="frameshifted; too many ambiguous residues; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="naphthoate synthase"
     assembly_gap    6001..6072
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6852..7618)
                     /locus_tag="DHV98_09400"
                     /pseudo
     CDS             complement(6852..7618)
                     /locus_tag="DHV98_09400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780535.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
     gene            complement(7628..8548)
                     /locus_tag="DHV98_09405"
     CDS             complement(7628..8548)
                     /locus_tag="DHV98_09405"
                     /inference="COORDINATES: protein motif:HMM:PF02775.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06539.1"
                     /translation="MNRMQEFKPDLLISLGGMIVSKRIKKLLRAMGIQCHWHIGIERP
                     NDTFFALKEHINLVPNQFFTGVMEHSSQADSSVSQFKSTWLSLKMTRLTGHKSFVASA
                     PYSDFTVHRTILECLPNHINLQLANSASIRYAQLFEANPTHAIYCNRGTSGIEGSMST
                     AIGAAISTQETQSRATVFITGDLSFFYDINALWQKYTPNSLRIIIVNNNGGGIFRILP
                     GAKQIKPFETFLETTHSRNASLMASEFGFEYFDAHNLNALKSILESFFNPSSAPRILE
                     VFTPSTLNDQVLNEYFDHLKVNTGTPALKF"
     assembly_gap    8585..8691
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8692..>9054)
                     /locus_tag="DHV98_09410"
     CDS             complement(<8692..>9054)
                     /locus_tag="DHV98_09410"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06540.1"
                     /translation="HVLGSVHLSDQEPDLYQASNQLHKTFKKAASLWGPIHINVPMDE
                     PLYAVAQEPVDFDFNLLTHDQDFFEQPTEASRLQKVYHQYHSATKKMILVGALPPNSI
                     AKAVVDHWRSDPSIIVLI"
BASE COUNT         2547 a         1923 c         1841 g         2478 t
ORIGIN      
        1 tccccattat ccttgtaggc cgagcctatt ggcaagggct ttatgattgg attaaaaata
       61 ctatggcgca agaacgcaat atcagtccag atgatttgca tttaatagaa ctcgttgata
      121 ctgaagatga ggtcgctcaa attctgacta acttttacga tcaatttgcc ataagcccta
      181 atttttaaga cacttatgcc tgcaggactt cgtccatttc ttaatcgttt aatcctctcg
      241 ctcatctttt ttttaggcgc gacaccgttg tcttttgggc agcataagat tgccttagaa
      301 gtggtcctgg atacgttaaa cacggaactc accataaacc aagagatgct tttggttaat
      361 gcaacgtcaa acccgctgaa tgcgttctat tttttggatt gggccaatag tttttcagat
      421 aaaacaagcc ctctcggtca gcgatttgca gaaaatttcg aggccagttt tcattttgaa
      481 aaggacgaag atcgcggacg caccaggatc gaaaattgga ccatcaatgg cgaaatagcc
      541 gattatgagc gttcggccat tgatcaaata aaattgaact tagcgcaggc cttaatgccc
      601 ggtgatagta taaaggctca gctgcgttat aaggtcaaaa tcccgaaaga taaatacacc
      661 cgatttggcg ttgataacaa aggtaattac cacattaaat attggtggat tacccctgcc
      721 gcttttgacc aatcatgggt tgtatacagc aataagaacc tcgatgattt tgtaatggcc
      781 ccggttcaat taaaagctaa gtttcaatac ccggttcatt taggtttcaa aacagattta
      841 gattcgataa gcgctgaaat ggtctccttg ggttcggaaa attcaatcca atctatccgc
      901 gccaattacc agggaaaacg tcaggacgcc gtgccgctgc attggttcca caaacctgaa
      961 tttcaggttt atcaaacgaa gcatttgagc atcattactg attttgacct aaaaaaaagt
     1021 gctgctgaaa taagacaatt tcaactggat cgcatcgatg cttttttatc cgaacaactc
     1081 ggaccgctgc agcacgagcg tttgatgatc gatagtcgcc aatacaaact caatcctgtt
     1141 tacggcttga atcaattgcc tgattttttc aacccatttc ctgcaggttt tgaccaagaa
     1201 ttagccttta tcaagctcat atcagatcaa tatctaaagc gtactttggc cattaacctt
     1261 agagaccatt attggatacg tgcaggaatt caaatatatc tacttcaaga atacgtcaag
     1321 cgtcactatc ccaatcagaa gcttttgggc agtattagtc gctggcccat tgtgcgctgg
     1381 tccatgctca gcgacttaga ttttaatgca caataccgcc tggtttatct taacggagtg
     1441 cgcaacaatg ttcatcagcc tttaggcacc tcaaaagacg aattgattaa tttcaatgct
     1501 aaaatcagca atgaatattt ggccggggtt catatgaatc ttttggacca atacctaggt
     1561 aaagataccc tgaaacaaag attgaaaagg ctctggagcc aaaataagcg catgatcaat
     1621 cctaatacgt ttgagcgtat tttgagtgat ggtcaagaag atttatcctg gtatttcaag
     1681 agtttcgtca atgaacgcac ctccaatgat tttaagattt cagaggtgat ttcccgcggt
     1741 gactctttgg cagtcaccct catcaataaa ggaaaatcga acagccccgt gcccttgtcg
     1801 cgctacgtca acgacacgat cagtggaacg atatggacgc ccccatttga aggaaaggtc
     1861 actgtatcaa ttccgaaata tcaaaccgaa cgattagtgg tcaatcaatc aggtacggtc
     1921 ccggagatta atcagcgaaa taactatgcc ggtgttgaga aaacttaccg acgtccattg
     1981 caactgcggc ttattcaaga tattgaagac cctaattatc gacaaatatt catgctcccg
     2041 tcggtaggat acaaccttta tgacggacta agtttaggga taaggtggta taatcgaacc
     2101 attttgccta aaccgctcca ttacaatttt gaaccccaat acgcattgag atccaactcc
     2161 atggtgggtg gtggatcatt tgtctataac gactggaatg aaacctcaaa tttatttctc
     2221 aagcgctatg gtattgctgg aaactatttt tcctatgacg caggtttatt ttacagaaga
     2281 ctttccccct atgccatttt tgcgtttaga gaccaaagtg atttacgaaa aaatcaaaga
     2341 caatatgtga cccttcgctc agttcatgtg acgcgagata aatcacctga ggcagcggct
     2401 cgagagccca actatagcgt ttataacctt cagtacaatt actctgacaa taatctaatt
     2461 gattattaca gtgccgattt taatgctcaa tggtcctcag cctttacaaa ggtttctgca
     2521 caatttgagt accgtaaatt atttttgagc aatcgacaaa tcaacttacg ctttttcacg
     2581 ggattgtttt tgcgcaacga atcgcccagt gatgagaact attttagttt tgccttagat
     2641 cgacctacag attatctttt tgattataat tattacggac gaagtgaaag tagtggaatc
     2701 tacagccaac aattaattat tgccgaaggg ggctttaaat ccaaactcca acccggtttc
     2761 gctaatcaat ggatcagcac ttttaattcc agtgtgaatc tttggcgatg gatctattta
     2821 tatggtgatt taggtttggt aaaaaacaaa ggcgacaatg cgcgagtggt ttatgattcc
     2881 ggggtgcgca cgagttttgt gacggacttt tttgaattgt attttccgct ttggtctaat
     2941 ttaggatttg agcctgaatt ggataattac ggttcccgta ttcgctttat tgctaccctg
     3001 gacctgcaaa ctttgagtcg attattcaca cgaaaatggt attgatatga atattttaaa
     3061 caaccttaga ttaatcctta ttctgtgctt aaccctaggt ttggcgccct attttcctga
     3121 accgcatatc tgggggaaaa taaaatggat cttaggaggc ggcgtgggca tgaagccgat
     3181 ggattatttt gactttttat tccatggcgc accgttcttc ttattgattc gttatgtcgt
     3241 tcttagcgga gtcaaaaaag acaaaaatca gtagtaagga cttttttgca gccaagcaga
     3301 agattgcaat tgacgcataa aatagttatt ttcgcatggc caaacaaccc aatcgacgac
     3361 ccgctcttag ttgagtaaaa cccctgaaca tgtcaaaaaa agacctttct tttgaagatt
     3421 ttaaagccga agtactgaac gattatgctg ttgcggttac cagccgggaa tgcagtttac
     3481 tcggacgacg agaggtgcta accggcaaag ctaaattcgg catattcggc gacggcaaag
     3541 aaattcccca gttggcctgg gccaaggcgt ttcaaaaagg tgattggcga tcgggttact
     3601 accgcgatca aacgtttatg atggccttgg atttgttatc catagaagat ttttttgctg
     3661 gactttatgc ccataagtct ttggagcatg aacccatgag cggtggccga caaatgggag
     3721 gccactttgc gacccatagt ttagatgatc agggaaattt taaagcacta aaagaccaat
     3781 acaatagcag ttctgatatc tcccctacgg ccggacaaat gccgcgactc ttgggattag
     3841 ctcaagcgtc ttccgtgtac cgttctctgg acaatctggg gcacctaaat catttatctg
     3901 attctggtaa tgaagttgct tggggttcca taggtaatgc cagtacgagt gaaggcttgt
     3961 tttgggaaac cgtaaatgcc ggtggggtca tgcaagtccc tatggtgatt agtgtatggg
     4021 atgatgaata tggcatttcg gtccatgcga aataccaaac gacaaaagaa aatatttcat
     4081 ctattctcag cggattccag cgtgaaaaaa aactcaatgg ttatgaaatc attaaggtca
     4141 atggttggga ttaccccgca ttggttgccg cttaccacaa agccgctgaa cttgcccgaa
     4201 atgagcacgt tcccgttttg attcacgttc aagagttgac ccagcctcaa gggcattcaa
     4261 cgagtgggtc tcacgaacgc tacaagggac ctgaacgact tcaatgggag cgcgaacacg
     4321 attgtaatct caaaatgaga caatggattc tggagcaaaa ttttgcgaca gatgaagaac
     4381 taatcgatct agaaaccgat ataaaaaaga aagtgcgtca aggcaaaaac aaggcttggc
     4441 aagcttattt acagccgcat cttcaagaaa gagacaccct acttactttg gcgacacctt
     4501 tggctcagcg cagtactgat gagcaggctt acaccacgct catcacaaat ttaaaaagca
     4561 atagagaacc actgcgacgg gatattatat cgacttcacg acagatccaa tggctcttaa
     4621 aacaagacaa cagtcctgaa aaaacagctt taaataagtg gcataaacat tacgtcgctc
     4681 aagtcgatcc actttatagt gaacatctct attctgaaca acccaacaaa gccatcaaca
     4741 ttaaagcgat cgcaccagaa tacgacgata acgcagaact taccgatggt cgtgtggtcc
     4801 ttcgcgagaa ctttaaagaa atttttcaaa accatccaga ggtattaatt tttggtgagg
     4861 acagcggaaa gatcggagat gtgaaccagg ggctggaagg aatgcaagaa gcgtttggcg
     4921 ccgtgcgcgt gagcgacaca ggaattcgcg aagcaaccat attagggcaa gggatcggaa
     4981 tggccatgcg tgggctgagg ccgatcgctg aaattcagta cttagattat gtcttgtatt
     5041 gtttgcaaac catgagtgat gatctagcca ccctgcggta tagaagttgt ggcaaacaaa
     5101 aagccccctt aattgtccgt actcgagggc atcggctgga aggtatttgg cacagtggtt
     5161 ctcccatggg cggtctgatt catttacttc gtggaatgta tatcttagtc ccacgcaata
     5221 tgactcaagc ggcgggattt tataacacat tacttcagag tgatgaaccc gcattggtca
     5281 tcgagagtct caatggatat cgtctcaagg aaaaattacc cactaacttg ggaacctatc
     5341 gcacacccat tggcgtcgta gaaacgctta aacccggaaa agacctcact gtggtttctt
     5401 acggaagcac cctgagaatt gtggaagaag cagcgcttaa attggaggaa aatactggga
     5461 tttctgccga ggttatcgac gtacaatccc tattgccgct tgacatcaat caagatatcg
     5521 taaaaagcgt ggcgcgaaca aatcgattac tcatcgtgga tgaggatgtt cctggtgggg
     5581 cctcagccta tattctcgan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncaaaatg cctatcaaca
     5701 tttagatagc gccccaaatg tacttacagc aaaagcgcat cgtccggcct atggcaccga
     5761 tggggattat ttttcaaagc cttcttttga agatatttac gaacgcatgt atgccatcat
     5821 gcacgaggca aatccgaaac tttacccgag tttaatttaa gtctatagac cctaaggcag
     5881 ccactttttc tcaaaatttg gcggccgttt ttctagaaaa gcatctctac cctccttagc
     5941 ttcatcggtc atgtaggcca gtcgtgtagc ttctcccgca aatacttgtt ggcctaccat
     6001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6061 nnnnnnnnnn nnacttgttg gcctaccatg ccatcatcag ttaaattcat ggcaaacttg
     6121 agcatcttaa tggagattgg tgattttttt aagatttcct gcgcccattc aaaggccgtt
     6181 tgttccagcg cgtcatgagg aactacggcg ttaaccatcc ccatttcata agcttcttga
     6241 gcggcataat ttcttcccag gaaaaagatt tcccgggctt ttttctgacc gaccattttg
     6301 gctaaataag cactcccgta ccctccatca aaactggtga catcagcatc tgtttgcttg
     6361 aaaatagcat gctcggcact gaccaaggtc aaatcacagg tgacatgtaa actatgacct
     6421 ccgcctacag cccaccccgg cacaacagca ataacagctt tgggcataaa gcggatcaag
     6481 cgctgaacct ccagaatgtt taatcgatga taaccatctt gaccgacata gccctgatgc
     6541 cctcgggcac tttgatcgcc ccctgagcaa aaactataca ccccatcttt aggagaaggg
     6601 ccttctgccg aaagcaacac taccccaatt tgcgtgtcct cttgagcatc gtgaaacgct
     6661 tctaatagct cactcgtggt ctttggtctg aaagcattgc gcacctcagg acgattaaaa
     6721 gcgatgcggg caacgccttg acatttcttg taagttatgt cttgaaattc tttaactgtt
     6781 ttccaaatcg gctgattcat gactgtcatt tttaaaacgt ttattcaaaa tcaagaagga
     6841 tctctgttta tttattcatt gtctaataaa cgaatccctt ctggagcgat actgatcttt
     6901 ttctccttat acagagtgcc aatagccttt ttaaacaatt tcttgctcat gcctaattct
     6961 tgacgaatta aatccacaga tgaagcatca ctcaagggca aaaaaccgcc cgccgcttca
     7021 agctcctcaa gaatataagc agcattaggt tctatacttc tatatcctac aggctgcaac
     7081 acgatgtcta ctttgccatc ttctctgact tttttgacat aagccgtcaa tttgtcccca
     7141 gagcgaatat cctcaaatat atcgtcgata tagattaatc cttggtgctt ttggttgata
     7201 atgacattgg cgcctttttc ggtaaggtgg gttaccagga cttcgcaagg atcaaacttt
     7261 tcgagggtca ttccctcttg ggttaaaaaa cgattggttt tactcgaacc cactaatcga
     7321 ttggtttttt ggtcgagata gagataaaca atataccaat gccctacctt catcggacgc
     7381 gcttgctcgc gaaatggtac aaaaagttgc ttgactaggc cccaatcgac aaaggccnng
     7441 ctattggacg ctcttcattg tctaaataga caaaaacatc caaggcatcg ccaatgcgaa
     7501 aatcttccgg tttataccga ttaggcagca agacttcttc gtcttgttca ttacccaaaa
     7561 agaggcctgg ttcggtctca cgcagtatgg tcaaagtatt gtattggcct agattcatag
     7621 atgaaattta aaattttaga gcgggagttc ctgtatttac ttttaaatgg tcaaaatact
     7681 cattcaacac ctgatcatta agtgtgcttg gggtaaaaac ttctaaaata cgcggtgcgc
     7741 tactggggtt aaaaaatgat tctagaatac tttttaaagc gtttaaattg tgtgcgtcaa
     7801 aatactcaaa gccaaattca ctggccatca gtgatgcatt tcggctatga gtcgtctcta
     7861 aaaacgtttc gaatggttta atttgtttgg ctccggggag tatgcgaaaa atccccccac
     7921 cgttattgtt tacgataatt attctcaatg agttcggcgt atacttttgc caaagggcat
     7981 tgatgtcgta gaaaaaactt agatctccag taataaaaac tgtcgctcta ctttgggtct
     8041 cctgagtact aatggctgca ccaatagccg tgctcatact tccttctatt ccgctggtcc
     8101 ctcgattaca ataaatcgcg tgcgttggat tggcctcaaa taattgcgcg tagcgaatac
     8161 ttgcgctatt ggccaactgg agatttatgt ggttgggaag acactctaaa atagtacgat
     8221 gaaccgtaaa atcgctatat ggggcggatg caacaaaaga tttatgacct gtcaaacggg
     8281 tcatttttaa actcagccaa gtacttttaa actgagacac agatgaatcc gcttgactcg
     8341 aatgttccat caccccggta aaaaattgat ttggcaccaa attaatatgt tccttgagcg
     8401 caaagaacgt gtcattgggt cgctcaattc cgatatgcca atggcactga atgcccatcg
     8461 cccgcaataa tttcttaatg cgcttagaga caatcatccc ccctaaactg atcagtaaat
     8521 ctggtttaaa ctcctgcatg cgattcattg gaaaatcagt aataacctga tcaattcccg
     8581 atatnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncgatcaaca
     8701 caatgatact gggatcactg cgccaatggt ctacgacagc tttagcaatt gaatttggcg
     8761 gtagcgcacc gacaagtatc attttttttg tagccgaatg atattgatga tacacctttt
     8821 gtaaccgaga cgcctctgtg ggttgctcaa aaaaatcttg gtcatgggtt aagaggttaa
     8881 aatcaaaatc aacgggctct tgtgccacag cgtaaagagg ttcgtccata gggacattaa
     8941 tgtgtatggg accccataag cttgccgctt ttttaaaagt tttatgcaat tgatttgacg
     9001 cttgatataa gtcaggttcc tgatcagaga gatggacaga ccccaaaaca tggc
//
LOCUS       DPUP01000242           12526 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_10953,
            whole genome shotgun sequence.
ACCESSION   DPUP01000242 DPUP01000000
VERSION     DPUP01000242.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12526)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12526)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12526
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..1759)
                     /locus_tag="DHV98_09415"
     CDS             complement(<1..1759)
                     /locus_tag="DHV98_09415"
                     /inference="COORDINATES: protein motif:HMM:PF07819.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06541.1"
                     /translation="MKKALIYASLLLIPKLALSQNPAPVDLDALLSPIIGSDPQEIIL
                     YDRVTPLANLTQFNDSINCARPALFEQALSELHRSAGNQEFITVQNLRSYAIADSIVN
                     KTKIALIHQEINHLNIEDQRHPNAAFVINDTVITHQNAQAPALRSFELIMASPLKKVV
                     QGPEISFVFDQDLLLGQFQEVKEIWSDLGTNDTRKIWENGQWTQSEHQVTINTTGEHL
                     INFIVEYHDGRVRTTQSLIHVKHAATNQSSLIENGQIFAQIPWQGFNETSPYLGKLDY
                     RIFYRTINGNQQASLQKPIVIIDGFDPGDRRQIQDSDPHPWATDNEHRSIEDMMSYVD
                     HQGNQVAIIPMLRNLGYDVVVVNHPTHWHNGIRIDGGADYIERNALTHVQLYQRLIQR
                     LNQNNSNESLVIVGPSMGGQISRYALAYMEKHNIEHRTRLWVSVDSPHLGANIPIGVQ
                     SLLHLMYNITGSVAAGDFIEDQLNSAAARQQLIEQYANSSNEELGQIWLDGRSISQGF
                     SQNKGRPIYLNYYNNLFQNGLQGSQGYPTLSRNIALINGSLLGRSSFMNPFEALSTET
                     SGTLSQDNFINPGGQSLKIK"
     gene            complement(1915..2445)
                     /locus_tag="DHV98_09420"
     CDS             complement(1915..2445)
                     /locus_tag="DHV98_09420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06542.1"
                     /translation="MAHLPSYAPGTYIARADHSTQEDINEEKSLGLQIHEVGVALGQD
                     FPSGDSANLYLEGRLGLRLNRHLWLVAYGLSNRWDFNIGGAPNQGNTNSLSGSYGQKL
                     NLFDRLETEAYLGISYLVQKTENGNDQFWGLPLTLVVDKPIFESFSLGLVGQLQPTTK
                     KGRAFIGLKISYDLNH"
     gene            complement(2658..2993)
                     /gene="secG"
                     /locus_tag="DHV98_09425"
     CDS             complement(2658..2993)
                     /gene="secG"
                     /locus_tag="DHV98_09425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008612030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HCK06543.1"
                     /translation="MSTFSIFLILIIFIAFLLVVVIMVQNPKGGGLASSFGGGGTQQL
                     GGVKKTTDFLDKSTWTLSAILLGLILLSNMSLFEGTTSGEFMQDDIESVTLPETSELP
                     VTPEPTDQE"
     gene            complement(2996..3775)
                     /locus_tag="DHV98_09430"
     CDS             complement(2996..3775)
                     /locus_tag="DHV98_09430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06544.1"
                     /translation="MNLEHYNNLLAQPQRISIEDAPGLDRVVRQFPYFQSAQALRLKI
                     LKQTESLGYNQALKTTAAVTTDRDVLFDYITSPEFSQQTISETLIGHQDHVKQIEVTL
                     DNPENAPEIPAPELEENAWAVDKKPFNFDQKERHSFEQWLKLTAAKPIVREPEDGLGE
                     NADRAQDPNNSEDKWGKIDRFLAQKTSIKPDPLTSKQNRAESSLETHDELMTETLARV
                     YAQQKNYQKAIQAYKILILKYPEKSSFFADQIRELKRLLNA"
     gene            complement(3780..4292)
                     /locus_tag="DHV98_09435"
     CDS             complement(3780..4292)
                     /locus_tag="DHV98_09435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008256452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06545.1"
                     /translation="MQNVLKHIFLWGTLLISLSCGVYSFTGADIDYSSTKTFQVNNFA
                     NNAPIVEPKVARNFTLALQDILLNQTNLSLTNNNGDLIYEGEIVDYYIAPITATSRNT
                     AAENRLTIGVNVRFTNTKSPEKDFEQKFSFYYDYSGSAQLIGSQLDTALSIIFERLTQ
                     DIFNKSLANW"
     gene            complement(4300..5574)
                     /locus_tag="DHV98_09440"
     CDS             complement(4300..5574)
                     /locus_tag="DHV98_09440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HCK06546.1"
                     /translation="METIQSVKQRFEIIGNDAKLNRAIEKSIQVAPTDISVLVTGESG
                     VGKENIPRIIHALSLRKHNKYIAVNCGAIPEGTIDSELFGHEKGAFTGATTTRSGYFE
                     VADGGTIFLDEVGELPLPTQVRLLRVLENGEFMKVGSSQIQKTNVRIVAATNVNMATA
                     IEKGRFREDLYYRLSTVEIGLPALRERGEDIHLLFRKFASDFAQKYKMPTIRLDQQAV
                     GLLLKYHWGGNIRQLRNITEQLSVLEQKREIGYQKLKEYLPHVGSNLPAIIPSRKESS
                     DFSSEREILYKVLFDMQKDLNDLKKLTLELMNSGNTSKVKTEQAQLIKQIYAPEEQTA
                     SLAALNDEFQQEEQAHDVELIDLDDPVEQTPDKYHFAEDIEEEESLSLHDKELELIRK
                     SLEKYDGKRKEAAQELGISERTLYRKIKQFNL"
     gene            complement(5586..>6342)
                     /locus_tag="DHV98_09445"
     CDS             complement(5586..>6342)
                     /locus_tag="DHV98_09445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015782470.1"
                     /note="catalyzes the formation of
                     2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at
                     position 37 in tRNAs that read codons beginning with
                     uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCK06547.1"
                     /translation="YGGGLKKDFKNASEMAQATAVDFAQLLDMVATAQPKMRFRFSTS
                     NPQDMTRSVLYIMAKHPNICNYIHLPVQSGSTRILEAMNRQHTREAYMALIDDVRKII
                     PDCGISHDMIAGFPTETEQDHQDTLSLMDYVQYDFGFMFMYSERPGTMAARKMEDDVP
                     DPIKKRRLTEIIERQQKHSALRTKNFVGKTVEVLIEKESKKDPSFWSGRTPQNTVAVF
                     PKEQYQPGDFVLVHIEECTSATLIGKAVQMGNA"
     assembly_gap    6343..6439
                     /estimated_length=97
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<6440..7134)
                     /locus_tag="DHV98_09450"
     CDS             complement(<6440..7134)
                     /locus_tag="DHV98_09450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023561.1"
                     /note="catalyzes the formation of
                     2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at
                     position 37 in tRNAs that read codons beginning with
                     uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HCK06548.1"
                     /translation="MEKIIDQQLQGSALERPERLGNTKKLYIESYGCQMNFSDSEIVA
                     SILAKEGYDTTTDLNQADLVLVNTCSIREKAEQTVRKRLETYNAVKKNNPSMKVGVLG
                     CMAERLKSKFLEEEKIVDLVVGPDAYKDLPNLLDEVEAGREAVNVILSKDETYGDVAP
                     VRLGGNGVTAFVSITRGCDNMCTFCVVPFTRGRERSRDPQSIIEEINDLALKGYKEVT
                     LLGQNVDSYLWYGG"
     assembly_gap    7309..7386
                     /estimated_length=78
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7506..9998
                     /gene="topA"
                     /locus_tag="DHV98_09455"
     CDS             7506..9998
                     /gene="topA"
                     /locus_tag="DHV98_09455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013870165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HCK06549.1"
                     /translation="MAKNLVIVESPAKAKTIEKFLGKDFKVASSFGHIADLPSKELGV
                     DVEGDFSPQYRVSKDKKALVNDLKSLASKAEMVWLASDEDREGEAIAWHLSESLELPE
                     NKTKRIVFHEITKSASLKAIDHPRGIDYNLVNAQQARRVLDRLVGYELSPVLWKKVKG
                     GLSAGRVQSVSVRLIVDREREIESFSPVASFRVDAEFLTSDGSKFKAKLAKNLDYAQE
                     AMDFLEANKNAQYLISELNKKPAKKSPAPPFTTSTLQQEAARKLYFSVSRTMTVAQRL
                     YESGLITYMRTDSVNLSYEARKAAEKAIIQNYGAEYSKPRQFKGKSKGAQEAHEAIRP
                     TDLSRAQIDGDRDQMRLYELIWKRTIASQMSEANLERTQVKIDIKAKTPMDHTFVANG
                     EILTFDGFLKVYLEGTDFDEEEQEGMLPPLAQGQSLASELITATERFTRPPYRFTEAS
                     LVKQLEELGIGRPSTYAPTISTIIQRKYVEKGTVEGQPRAYQWLKLEDNQITQKQLIE
                     QVGSDKGKLVPTDIGIIVTDFLVAHFPDIVDLNFTAKVEADFDDIAEGKEDWRNMLKG
                     FYSKFHPNVERVNEHAERESGERILGADPQSGKTVLVRLGKFGPIAQMGDADDPDKKF
                     ASLRPDQQLHLIDFDQAMDLFKLPKVLGDFEEQEVEVANGRFGPYVRWGKQFISLPGG
                     MDPLSVDMAIAAELIKAKQQAGAPIYIYEDLPVQKGKGRFGPFIKWNDMFINVNKKYD
                     FDHLSDADIVALIEDKKQKEIDKLVASWPEENIRIEKARWGRFNLIKGKIKIELPKTT
                     NADKITLDQVQEMIAAQGSKKPKGRAKTKSKK"
     gene            9998..11161
                     /locus_tag="DHV98_09460"
     CDS             9998..11161
                     /locus_tag="DHV98_09460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HCK06550.1"
                     /translation="MKEYLRPVSKAVCAHREVLSDGVLGKQISIFQQEDKFPEVSNFK
                     FALLGVPEHRRDEDFMGETIEFDAVRMAFYGLYPGNWQWPMVDLGDIIPGNSIGDTDF
                     AVREVVHQLLLLGVMPIVLGGSQDLLYAHYRAFDGVHDMISLVNVDHRFDLGDHQKPL
                     TNKAYVGKMVVDSPYNLMNYSVLGYQSYLNPPEEIALMDKLHFDAYRLGNLIQDITLA
                     EPIMRQAQLVAMDVSSVNSSAMSFRYHKSPNGFDSREICALSRYAGISNGVKSFGIYE
                     LKSFERYESAPNLVAQILWYFIEGVCFRVNEGDLMNPDNFTLYSVPIDDMVLLFRKSK
                     RTGRWWIEMPIIDSLNNNLPTAALLPCAYEDYLSATQQNIPERWLKARLRNKV"
     gene            11276..>12526
                     /gene="gldK"
                     /locus_tag="DHV98_09465"
     CDS             11276..>12526
                     /gene="gldK"
                     /locus_tag="DHV98_09465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gliding motility lipoprotein GldK"
                     /protein_id="HCK06551.1"
                     /translation="MKKLIAVFAITALVASCSSNRDRGELVGAKGKKWYPEKPYGMTL
                     VPGGSFLMGKSDDDFVAVNDAPTRTVTVRSFYMDETEITNAEYRQFVNWVKDSTVRLR
                     LAILADEVGAVPGDGSIGEFAFVDQENQEMTPWEQYNYDNYFGMGDDFYAGRKINNDV
                     DLIWEPAEYPDEYYSEVMDSMYIPTEEAYNGQRTIDVSKLNFQYTYMDIQAAARAKEK
                     RRKDFIIKEDINIYPDTTVWIKDFNYSYNEPMHNDYFWHEAYGDYPVVGVNWKQAKAF
                     CAWRTLYKNAYQKSKGIPYVNTFRLPSEAEWEYAARGGLESATYPWGGPYAKNDRGCF
                     MANFKPLRGDYAADQALYTVEADSYEPNDYNLYNMAGNVSEWIDSSYDPGSYEYSSTM
                     NPSVNDPANKRKVVRGGSWKDVAYF"
BASE COUNT         3381 a         2499 c         2812 g         3659 t
ORIGIN      
        1 ctttgatttt taaactttgt cctccggggt taatgaaatt gtcctggctt aaggttccgg
       61 atgtttcggt actcaaggct tcaaagggat tcataaatga gctcctcccc agaagacttc
      121 cgttgatcaa tgcgatattt cgcgacaagg tcgggtagcc ttgactgcct tgaagcccat
      181 tttgaaataa attattgtag taattcaagt aaataggacg gcctttgttt tgtgaaaagc
      241 cttgagagat actgcgtcca tccagccaaa tctgcccgag ctcctcattg ctgctgttgg
      301 catattgttc tatgagttgt tgtctggcag cggcagaatt gagttggtct tcaataaaat
      361 cacctgcggc aacactaccc gtgatattgt acattaaatg aagtaggctc tgtacaccga
      421 taggaatgtt cgctcctaaa tgaggactgt ctacactcac ccataagcgc gtgcggtgct
      481 caatgttgtg tttttccata tacgctagag catagcgaga aatttgtcca cccatacttg
      541 gcccgacgat aacaagcgat tcattgctgt tattttgatt gagccgttgg atgagtcttt
      601 ggtaaagttg cacatgggtt aaggcattgc gttcaatata atcggcacca ccatcaatgc
      661 gaattccatt atgccagtga gtcgggtgat tgaccacaac cacatcataa cccagattgc
      721 gtaacatcgg gattatggct acttgatttc cttgatgatc aacgtagctc atcatgtcct
      781 caatggacct gtgctcatta tctgtggccc aggggtgggg gtcgctatct tggatttgac
      841 gtcggtctcc cggatcaaaa ccatcaataa ttacaatcgg tttttgtaag cttgcctgct
      901 gattaccgtt tatggttcgg taaaaaattc ggtaatctaa ttttcccaaa taaggcgaag
      961 tttcattaaa tccctgccag ggtatttggg caaaaatttg cccattttca atcaaagaac
     1021 tttgatttgt tgcggcgtgt ttcacatgga ttagcgattg agtagtgcga actcgaccat
     1081 cgtgatattc aacaataaaa tttatcaaat gttctcctgt tgtatttata gtgacctgat
     1141 gctctgattg cgtccattgc ccattttccc aaatctttct ggtatcgttt gttcctagat
     1201 cactccatat ttctttgacc tcctggaatt gacccaaaag tagatcttgg tcaaaaacaa
     1261 aacttatttc gggtccctgg acaacttttt ttaaggggga agccataatc aattcaaagg
     1321 accgcaaggc aggggcttga gcattttgat gcgtaattac agtgtcattt atgacaaaag
     1381 cggcattagg atgtctttga tcttcaatat taagatgatt aatttcttga tggatcaggg
     1441 caatctttgt tttattaact attgagtcgg caatggcgta gctccgcagg ttttgtaccg
     1501 taataaattc ttgattccca gcagaacggt gtaattcgga gagtgcttgc tcaaataggg
     1561 ccggtcgtgc acaattgata ctgtcattaa actgagtgag attggccagc ggggtaaccc
     1621 ggtcataaag gataatttct tgtggatcag agccaattat tggggacaat agcgcgtcta
     1681 gatcaacagg ggcaggattt tggcttaggg ccagtttagg gatgaggagt aggcttgcat
     1741 aaatgagtgc ttttttcatg aaacattaat attctaagtg gatacatctg gggagttttt
     1801 tgatatgatt tactctgccc atatctcatt gaagacgcag agatcgtccg atggatatag
     1861 gtaggattaa atggtatttg ccttatttag ttcgcgggga gatttatctt gaccttagtg
     1921 atttaggtcg taacttattt taagtccgat aaaggctcgg cctttttttg tggtcggttg
     1981 gagttgccca actaggccca aagaaaagga ttcaaaaatt ggtttatcga caaccaaggt
     2041 caaaggaaga ccccagaatt gatcgttgcc gttttctgtt ttttggacaa ggtaacttat
     2101 ccccaagtag gcttctgttt ccagacgatc aaaaagattt agtttttgcc cataggaccc
     2161 agataagcta tttgtgtttc cttggttagg ggcgccgcca atattaaaat cccaacgatt
     2221 gctcagtcca taggctacaa gccaaaggtg tcgattgaga cgcaacccga ggcgaccctc
     2281 gaggtaaagg tttgcggaat ccccgctagg aaagtcttgc cccaaggcca caccaacttc
     2341 atgaatctgt aggcccaatg atttttcttc attaatatct tcttgtgtgc tatgatccgc
     2401 ccgagcaata tatgttcctg gggcatagga ggggaggtgc gccatttggc cattaacttg
     2461 taggcaaaat agtatggtaa agagaaaagc tgcgtgtttc atatggatat attttaggag
     2521 tcgactaaac cgttgcgaca acaagaataa cgcaaataac gcagctttgt tatatggatc
     2581 ttgtgacgat ttataaattg cgacaaaaaa aacggcgctc gaagaggccg tttttgagag
     2641 gttatgttat tgagttgtta ctcttgatcg gtcggttcag gggtaacagg cagttctgat
     2701 gtttcaggca aggtgacgct ttcaatatca tcttgcatga attcaccact cgtggtgcct
     2761 tcaaaaaggg acatgttcga caataaaatt aatcccagta aaatggccga caaggtccaa
     2821 gtactcttgt ctaaaaaatc tgtggttttt ttgacgccac ccagttgctg agttccaccg
     2881 ccaccaaatg atgacgcgag tccgcctcct tttggatttt gtaccataat gaccacaaca
     2941 agcaaaaagg cgatgaagat gatcaaaatc aaaaatattg aaaaagtgct catatctatg
     3001 cgtttaacaa acgttttaat tcccgaattt ggtctgcaaa gaaactactt ttttcgggat
     3061 atttcaaaat taaaatttta taggcctgaa tcgctttttg ataatttttt tgttgcgcat
     3121 agacccgagc aagggtttcg gtcatcagtt catcatgcgt ctctaaagag ctttcagccc
     3181 ggttttgctt gcttgttaaa ggatctggtt ttatgcttgt tttttgcgct aaaaaacgat
     3241 ctatttttcc ccatttgtcc tctgaattat ttgggtcttg tgcccgatcc gcgttttcac
     3301 ctaatccatc ttcaggctcc cgaacaatgg gcttggccgc agtgagttta agccactgct
     3361 caaaactatg ccgttctttt tgatcgaaat tgaagggctt tttatcaaca gcccaggcat
     3421 tttcttctaa ttctggtgcg ggtatttcag gcgcattttc tggattgtcc agggtaacct
     3481 caatttgttt tacgtgatct tgatgcccaa tgagggtttc agaaatggtt tgttgagaaa
     3541 attcaggtga ggtgatataa tcaaataaaa catcacgatc tgtggtgacc gccgccgttg
     3601 ttttaagggc ctggttatat cccaaagact ctgtttgttt tagaatcttg agtcttaacg
     3661 cttgggcgct ttggaaataa ggaaattgac gcacgacacg atcgagccct ggagcgtctt
     3721 ctattgaaat acgctggggt tgggcgagaa gattattgta gtgctctaaa ttcatacaac
     3781 taccaattgg ccagggattt gttgaaaatg tcttgggtta atcgttcaaa gataatggat
     3841 aatgccgtat cgagttgact ccctatgagc tgagcgcttc cggaataatc gtaataaaaa
     3901 ctgaatttct gttcgaaatc cttctcagga gattttgtgt ttgtaaaacg cacattaacc
     3961 ccgatcgtta atcggttttc ggctgctgta tttcttgagg ttgccgtaat cggagcgatg
     4021 taatagtcga ctatttcgcc ctcataaatt aaatcaccat tgttattggt gaggctcaaa
     4081 ttcgtttgat tgagcagaat gtcttgaagg gccaaagtga aattgcgggc aacttttggt
     4141 tcaacaatgg gcgcgttatt ggcaaagtta ttcacctgaa atgttttagt ggagctgtaa
     4201 tcaatatcgg cccctgtaaa tgaataaacg ccgcaggata ggcttatcaa aagcgtcccc
     4261 cataaaaaaa tgtgcttcaa tacgttttgc atgaccccct tacagattaa attgtttgat
     4321 ttttcgatag agcgtacgtt cacttattcc gagttcttgt gctgcctctt tgcgtttccc
     4381 atcatatttt tctagagatt ttcgaataag ctcaagttct ttgtcatgaa gcgacaaact
     4441 ctcttcttcc tcaatgtctt cggcaaaatg gtatttgtca ggagtctgtt ccacagggtc
     4501 atccaggtct atcagctcaa cgtcatgggc ctgttcttct tgctggaatt catcattaag
     4561 ggccgccaga gatgcagttt gctcttctgg ggcataaatt tgttttatga gctgcgcctg
     4621 ctccgtttta actttggagg tatttccaga attcatcagc tccaaagtga gttttttcag
     4681 atcgttaaga tctttttgca tgtcaaagag cactttgtac agaatttcac gctcgctgct
     4741 aaaatcagag gattctttac gcgagggaat aatggccggt aaattactgc ccacgtgggg
     4801 taagtactct tttaattttt gataccctat ttctcgtttt tgttctaaga cagaaagttg
     4861 ttctgtgatg ttacgcagtt gacgaatatt gcctccccaa tgatacttca aaagcagtcc
     4921 tacggcctgt tggtctaatc ggatggtcgg cattttgtat ttctgtgcaa aatctgaggc
     4981 aaatttgcga aacagtaaat gaatgtcttc gccgcgctct ctgagcgcgg gcaaaccaat
     5041 ttcaacagta ctgagtcggt agtacaaatc ttctcggaac cgcccttttt caatggcagt
     5101 ggccatattg acattggtcg cggctacaat acgcacattg gttttttgaa tttgagaaga
     5161 cccaaccttc atgaattcgc cattttctaa aacacgcaat agacgaacct gtgtcgggag
     5221 gggcagctcg ccaacctcat ctaaaaaaat ggtcccgcca tcggcgactt caaagtaacc
     5281 actgcgtgtg gtggtggctc ctgtaaatgc gcctttttca tggccaaaaa gttcactgtc
     5341 aatagtgcct tctggaatag cgccgcagtt taccgcgatg tatttattgt gctttctaag
     5401 cgaaagggcg tggataatgc gcggaatatt ttccttacca accccacttt ctccagtaac
     5461 caaaacggaa atatcagtag gggctacctg aatcgatttt tcgatagcgc ggttgagttt
     5521 tgcatcgtta ccgatgattt caaagcgttg ttttaccgat tgaatagttt ccatttgttt
     5581 cgtcgttaag cattacccat ttgtaccgcc ttcccaatga gcgttgcgct ggtgcactct
     5641 tcaatgtgga ctagaacaaa atctcctggc tggtattgtt ctttagggaa aacggcaacg
     5701 gtgttttggg gggttcttcc gctccaaaaa ctggggtctt ttttactttc tttttcaatc
     5761 aaaacttcaa cagttttacc cacgaagttt ttagtgcgca gggcactgtg tttttgttgg
     5821 cgttctataa tttctgtgag tcttcttttt ttaatgggat cggggacatc atcttccatt
     5881 tttcttgcag ccatagttcc ggggcgttcg gaatacataa acataaaacc aaagtcatac
     5941 tgcacatagt ccatcagact taaagtgtcc tgatgatctt gttcggtttc cgtaggaaaa
     6001 ccagcaatca tatcatgaga aatgccgcaa tctggaatta tttttcttac gtcatcgatc
     6061 agggccatgt aggcttcacg tgtatgctga cggttcatgg cttccagaat tctggtactg
     6121 ccactttgaa caggtaggtg aatataattg cagatgtttg gatgcttagc cataatatac
     6181 aataccgagc gtgtcatgtc ttgaggatta ctcgttgaga atctgaagcg cattttaggc
     6241 tgggccgtcg cgaccatatc taataactga gcaaaatcaa ccgccgtggc ttgagccatt
     6301 tcggaggcat ttttaaaatc ttttttcaac ccaccgccat acnnnnnnnn nnnnnnnnnn
     6361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnc cgccatacca cagatagctg tccacgtttt gtcccagtaa
     6481 ggtcacttct ttgtagcctt ttaaagcaag atcattgatt tcttcaatga tgctctgagg
     6541 atctcgggag cgctctctcc ctcgagtaaa gggcacgaca cagaaggtgc acatattgtc
     6601 gcatcctcgg gtaatactca caaaggccgt tacgccattc cctccaagac gtaccggggc
     6661 aacatcacca taggtttcgt cttttgacag gataacattc accgcctcac gccccgcctc
     6721 aacctcgtcc aaaagattgg gtaagtcttt gtacgcatcg ggaccaacca ctaaatcaac
     6781 aatcttttcc tcttctaaaa atttgctttt caagcgttca gccatgcatc ccaaaacccc
     6841 aactttcata gaaggattgt tctttttgac cgcgttatag gtctccagac gttttctcac
     6901 tgtttgttct gctttttcac gaatcgaaca cgtattgacc agcactaagt cggcttgatt
     6961 caggtcggtc gtggtgtcat acccctcttt ggcaagaatc gaagcgacga tttcactgtc
     7021 gctgaaattc atttgacagc cataactctc tatatagagt tttttggtgt tgcccaatct
     7081 ttcaggacgc tcaagtgcag acccttgaag ttgctgatca ataatttttt ccatgctcat
     7141 aaacgcttaa atcacgaggt atcaaattca gtgcctctta taatttaaac cgcaaaggta
     7201 caacaatctg tcaaaatgtc agcaatattt gacgggtcga attgcctctt gccttacccg
     7261 atgtaggccc agaaatttca atccgaattg actaattacg attcgttgnn nnnnnnnnnn
     7321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7381 nnnnnnaatc catcaagtat ttttttaacc tttaggttaa aggcgtgtct tcggctttca
     7441 aaattactcc tcgggacagc gaattaaaaa attcgtctac ttttgtacac caaaatacgg
     7501 cgcttatggc aaagaattta gtgatagttg agtctccggc taaggccaaa accatagaaa
     7561 aattcttagg taaagatttt aaggtagcct ctagtttcgg tcacatcgca gatcttccgt
     7621 ccaaagaatt aggcgtagat gtggaaggag atttcagtcc tcaatacaga gtctctaaag
     7681 ataaaaaggc cttggtcaat gatttgaaat ctttggcaag taaagcggaa atggtatggc
     7741 tcgcgagtga tgaggaccga gagggagaag ctattgcctg gcatttatca gagtctttgg
     7801 aattgcctga gaacaaaacc aaacgcatcg tatttcatga aatcactaag tctgccagtc
     7861 tcaaagccat tgatcatccc cgaggtattg attataattt ggttaacgcc cagcaagcaa
     7921 gaagagtttt agatcgattg gtaggatacg agctttctcc tgtattgtgg aaaaaagtta
     7981 agggcgggct ttctgcaggg cgcgttcaaa gtgtatcagt gcgattaata gtcgatcggg
     8041 aacgcgaaat agagtccttt agtcccgtag cttcttttcg cgttgatgca gagtttttaa
     8101 ccagtgatgg atcaaagttt aaggctaaat tggccaagaa tttagattat gcccaagagg
     8161 caatggactt tcttgaagcc aataaaaacg cccagtattt aatttcggaa ctcaataaaa
     8221 aaccggctaa aaaatcgcct gcgccgcctt ttaccacctc aaccttgcag caagaagcgg
     8281 cccgtaaatt atacttttca gtgagtcgca ccatgaccgt ggcccagcgc ctttatgaat
     8341 cgggattgat tacgtatatg agaaccgata gtgtaaatct ttcctatgaa gcacgtaagg
     8401 cagccgaaaa ggcaataatc caaaattatg gtgctgagta tagcaagcca agacaattca
     8461 aaggaaagtc aaaaggcgct caagaagcgc acgaagccat acgtcctacg gatctgagtc
     8521 gtgcgcaaat cgacggagat cgtgatcaaa tgcgccttta tgaattgatt tggaagcgta
     8581 ccatagcctc tcaaatgagc gaggccaatc tggagagaac tcaagtcaaa attgatataa
     8641 aggccaagac tccgatggat catacgtttg tcgcaaatgg tgagattttg acctttgatg
     8701 gatttttaaa agtctactta gaagggactg attttgatga ggaagagcaa gaagggatgc
     8761 ttccgccatt ggcccaaggg cagtctttag caagtgaatt aataacggca accgagcgtt
     8821 ttactcgtcc gccttatcga ttcactgaag cctcattggt caagcagctc gaagagcttg
     8881 ggattggtcg cccatcgact tacgccccga cgatttcgac aattattcag cgtaagtatg
     8941 tggaaaaggg cactgtcgag ggacaacccc gtgcttatca atggctaaaa ctcgaggata
     9001 accaaatcac ccaaaagcag ttgatcgaac aagtgggaag cgataaagga aaactcgtgc
     9061 ccaccgatat tggcattatt gtcacggatt tcttagtggc ccattttcct gatattgttg
     9121 atttgaattt tacggcaaaa gtagaagccg attttgatga tattgcagag ggtaaagaag
     9181 attggcgtaa tatgctcaaa gggttctaca gcaaatttca ccccaatgtg gagcgggtta
     9241 acgaacatgc cgaacgcgaa agtggagaac gtattttggg ggctgaccca cagtcgggga
     9301 aaacggtcct tgtgcgtttg ggtaagtttg ggccgattgc acaaatgggc gatgccgatg
     9361 atcccgataa aaaatttgcc agtcttcgac cggatcagca acttcatttg attgattttg
     9421 accaggctat ggacttgttt aaattgccaa aagttttagg tgattttgaa gagcaagagg
     9481 ttgaagtagc caatgggcgc tttggtcctt acgtgcgttg gggaaaacaa tttatctctt
     9541 tacctggggg tatggatcca ctttcagtag atatggcgat tgctgcagaa ttaatcaaag
     9601 caaagcagca ggcgggcgct ccaatttata tttatgaaga cctcccagta caaaagggaa
     9661 aagggcgatt tggtccattt atcaaatgga acgatatgtt catcaatgtc aataagaaat
     9721 atgacttcga tcatctaagt gatgccgata ttgttgccct cattgaggat aaaaaacaaa
     9781 aagaaataga taaattagtg gcctcttggc cagaagaaaa tatccgtatt gagaaagcgc
     9841 gttggggacg attcaatttg ataaagggta aaattaaaat tgaattgccc aaaacgacca
     9901 atgctgataa aatcaccttg gatcaagtac aagaaatgat tgctgcccag ggatcaaaaa
     9961 agccgaaggg ccgggcaaaa actaagtcga aaaaataatg aaagaatacc tcagacccgt
    10021 ttctaaagcg gtttgtgccc acagagaagt tctttccgac ggggtgctgg gtaaacaaat
    10081 atcaattttt cagcaagagg ataaatttcc tgaagtctca aactttaaat ttgccttatt
    10141 aggggtgccg gagcatcgtc gggatgagga ttttatggga gaaaccatag aattcgatgc
    10201 cgtgcgcatg gcgttttacg gcctttaccc tggcaattgg cagtggccca tggttgatct
    10261 cggggacatt atcccgggga actcaattgg cgatacagat tttgccgtac gggaggttgt
    10321 tcatcagtta ttacttctcg gtgtgatgcc gattgttttg gggggcagcc aagatttact
    10381 ttatgcccat tatcgcgcct tcgatggggt gcatgacatg attagtttgg tcaatgtcga
    10441 ccatcgcttt gatttaggag atcatcaaaa acctttgacc aataaggcgt acgtcggaaa
    10501 aatggtggta gatagcccgt ataatctaat gaattacagc gtattgggct atcaatcgta
    10561 tctaaatccg cctgaagaaa ttgcgcttat ggataaattg cattttgatg cttatcgatt
    10621 agggaatctc attcaagata ttactctggc agagcccatt atgcgccagg cccaattagt
    10681 ggcgatggat gtttcgagtg ttaacagtag tgctatgagt tttcgctacc acaaaagtcc
    10741 gaatggattt gacagtagag aaatttgtgc cttgtctcga tatgcaggga ttagtaacgg
    10801 ggtaaaatcc ttcgggatat acgagctcaa atcctttgag aggtatgaaa gtgcgcccaa
    10861 tctagtggct caaatacttt ggtactttat cgaaggggtt tgctttaggg tgaatgaagg
    10921 tgatttaatg aatccagaca actttacctt gtattctgtg ccgattgatg atatggtgct
    10981 cctctttagg aaaagcaaac gaacggggcg ttggtggatt gaaatgccaa ttattgattc
    11041 tttgaataat aatttgccaa ctgctgcgtt attaccctgc gcttatgaag attatctgag
    11101 tgcaacgcag caaaatattc ccgaacgctg gttgaaagcg cgtttgagaa acaaagttta
    11161 acataaaatg tgtgttttcg atttaagggt tttttccata aaattgttgc ttttttaaaa
    11221 atttatggat aggtttacgc ccttgaatct tagtaatttc ttaaccgaat catctatgaa
    11281 aaagttaatt gcggtttttg caatcaccgc ccttgtggca agctgtagct caaatcgaga
    11341 tcgcggcgaa ttggttggcg caaaaggcaa aaaatggtac cctgaaaaac cgtacggaat
    11401 gacgttagtt ccaggaggtt cttttctaat gggtaagtct gatgacgact ttgtcgctgt
    11461 aaatgatgca ccgaccagaa ccgtcactgt ccgttcattt tacatggatg aaactgaaat
    11521 caccaatgct gaatatcgtc agtttgtgaa ttgggttaaa gactcaacag tccgtcttcg
    11581 cttggcgata ctcgccgatg aggttggtgc agtccctggt gatggtagta ttggtgaatt
    11641 cgcatttgtc gatcaagaaa atcaggaaat gactccatgg gagcagtaca attacgacaa
    11701 ctatttcggt atgggggatg atttttatgc cggtcgtaaa ataaataatg acgttgacct
    11761 gatttgggag cctgctgaat atccggatga atattattct gaggtgatgg attcaatgta
    11821 tatccccacc gaagaggcct ataatggtca gcgcacaatt gatgtaagca aattgaattt
    11881 ccagtacact tacatggata ttcaagcggc ggctcgtgct aaagagaaac gccgtaaaga
    11941 ttttattata aaagaagaca tcaatatcta ccctgacact acagtgtgga ttaaagattt
    12001 taattattcc tacaacgaac caatgcacaa tgactatttc tggcacgagg cctatgggga
    12061 ttatcctgta gttggcgtaa actggaaaca agccaaagct ttttgtgctt ggaggacgct
    12121 ttataaaaat gcttatcaaa aatccaaagg cattccttac gtaaacacgt ttagacttcc
    12181 gagtgaagca gagtgggagt atgctgcgcg tggtgggttg gagtctgcga cttacccatg
    12241 ggggggacct tatgccaaga atgatcgggg atgttttatg gctaacttca aacccttacg
    12301 tggggattac gccgcggatc aggcgctcta tactgtagag gccgattcat atgagccgaa
    12361 tgactacaat ctttataata tggctggaaa tgtgagcgag tggattgatt catcatacga
    12421 tccagggtct tacgaatatt cttcaacgat gaacccgagt gtcaatgacc ctgccaacaa
    12481 gcgcaaggta gtgcgcggtg gttcttggaa ggatgtcgct tatttc
//
LOCUS       DPUP01000243            3068 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_17230,
            whole genome shotgun sequence.
ACCESSION   DPUP01000243 DPUP01000000
VERSION     DPUP01000243.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..252)
                     /locus_tag="DHV98_09470"
     CDS             complement(<1..252)
                     /locus_tag="DHV98_09470"
                     /inference="COORDINATES: protein motif:HMM:PF16267.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4920 domain-containing protein"
                     /protein_id="HCK06552.1"
                     /translation="MAVYADLKAGDTVAAKFQAPVNSVCKMKGCWMRLAVGEQEAFVK
                     FKDYGFFVPKYLADVEVVVSGKAYVSKTSVDDLKHFAQDA"
     assembly_gap    314..487
                     /estimated_length=174
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            734..>936
                     /locus_tag="DHV98_09475"
     CDS             734..>936
                     /locus_tag="DHV98_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008238040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HCK06553.1"
                     /translation="MIEVSRCHNSRIDTVDFDQLTFGKTFTDHMFCCTYDQGAWQNPR
                     ITPYGPISLDPSAKVFHYGQAIF"
     assembly_gap    937..1140
                     /estimated_length=204
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1141..>1864
                     /locus_tag="DHV98_09480"
     CDS             <1141..>1864
                     /locus_tag="DHV98_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015024880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HCK06554.1"
                     /translation="LAIPEFPEALFFEALKTLVDIDRDWVKSGHGHALYIRPFAIATE
                     TGVAASPAMRYEFMILLSPVTAYYNEKLKVLIADHYSRAADGGVGFAKAAGNYAAQFY
                     PTNLAREKGYHQVIWTDASSHEFLEEAGTMNVFFRIGDTIITAPTSDRILDGVTRKSI
                     IKLAQQMHLEVSIRKFGVTELMEAYHSGDLKEIFGSGTAATISAVSAFGHKDKLYTLP
                     EVTDAYADRIKHALQEIQYNRAD"
     assembly_gap    1865..1971
                     /estimated_length=107
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2038..2439)
                     /locus_tag="DHV98_09485"
     CDS             complement(2038..2439)
                     /locus_tag="DHV98_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013072545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06555.1"
                     /translation="MKHYTDAVGDFHQAFGLGIEAQPKADLGEKKHLLRFNLMKEENE
                     EYLEAANNGDLVEVADALGDMLYILCGTLIEHGLQDKIVAVFDEIQRSNMSKLGQDGK
                     PIYREDGKVLKGPNYFKPDIASIVIDREGGK"
     gene            2543..2731
                     /locus_tag="DHV98_09490"
     CDS             2543..2731
                     /locus_tag="DHV98_09490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006989914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06556.1"
                     /translation="MFSTGQIIFSICFFVAFVLIIRLSYKKDRAIHQKHFKGKRWVLL
                     GFLAFFLLLLLAKIWLKQ"
     gene            complement(2778..>3068)
                     /locus_tag="DHV98_09495"
     CDS             complement(2778..>3068)
                     /locus_tag="DHV98_09495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013187160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HCK06557.1"
                     /translation="ELFGQLLRETQRITSEGDYEAAKALVEDYGVKVDQTLHAEVLER
                     NSKFTSAPYSGFVNPVLVPELNEQKEIIGFQIVQPESFEAQMLEYSQTYGNL"
BASE COUNT          709 a          603 c          532 g          739 t
ORIGIN      
        1 ggcatcttga gcaaaatgct tcaagtcgtc aacactcgtt ttggagacat atgctttacc
       61 ggaaaccacg acctcaacat cagcaaggta tttgggcaca aaaaatccgt aatccttaaa
      121 cttgacaaag gcttcttgtt ctcccacggc caaacgcatc caacaacctt tcattttaca
      181 tacgctattg accggcgctt gaaattttgc agcaacggta tctcctgctt tcaagtccgc
      241 atacacagcc atcattgccg cagcgtcaat ggcattttct gcatcgatct gcgccccgaa
      301 agaaacaaat tctnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnngcg ccccgaaaga aacaaattct tgaggtgttt cggcggattg atcttgacca
      541 ttttcagact gggatcctga atccttacaa gaaccaaaag caaataacaa tacggctaag
      601 aaaactaaat ttttcatgtt tagggtgttt taaaatcaat gaattagagt gcaattttat
      661 gaaattttaa gggtattttg ggtatttttt tgcctaattt tgccgcaatg agtcacgcca
      721 aagaactagc cgagtgattg aagtaagccg atgccataac agccgaattg atacggtaga
      781 ttttgaccag cttacttttg gtaagacctt taccgaccat atgttttgct gcacctatga
      841 tcaaggcgca tggcagaatc caagaatcac cccttacggc ccgataagcc tggaccccag
      901 cgcaaaagta tttcattacg gacaggccat ttttgannnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 cttagctatt cctgaatttc cagaggcatt attttttgaa gcccttaaaa cacttgtcga
     1201 tattgatcgt gattgggtta aatcaggtca cggccatgcg ttatatattc ggccatttgc
     1261 cattgccact gaaactggcg tagcggcatc gccagcgatg cgctatgaat ttatgattct
     1321 actttcacca gtaacggcct attacaacga aaaacttaag gtcctcattg ccgatcatta
     1381 cagtcgcgca gcggatggtg gtgtcggatt tgccaaagca gccggaaact acgccgccca
     1441 attttacccg acaaatcttg cccgtgaaaa agggtaccat caggtcattt ggaccgatgc
     1501 cagcagccat gagtttttgg aagaagccgg aacgatgaat gtatttttcc ggataggaga
     1561 tacgataatt acggcgccaa caagcgatcg gattctagat ggtgtgacgc gtaaaagcat
     1621 tataaagctc gctcagcaga tgcatttgga ggtctccata cgcaaattcg gtgtgacgga
     1681 gctcatggaa gcatatcaca gcggtgatct gaaagaaatc tttggctcag gcactgcggc
     1741 caccatcagc gcggttagtg catttggaca caaggataaa ctttacacct tgccagaggt
     1801 aactgatgct tatgccgacc gcattaagca tgcgcttcag gagatacaat acaatcgtgc
     1861 ggacnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncaatacaat
     1981 cgtgcggacg atccatttgg ttggcgcgta aaagtctaaa gcctttttac cgatgtttta
     2041 cttaccccct tcgcgatcga ttacgattga ggcaatatcg ggtttaaagt aattcggccc
     2101 cttgagcact ttgccatcct ctctataaat tggcttgccg tcttgtccta gttttgacat
     2161 attgctgcgc tgaatttcat caaaaacggc aacaatttta tcttgcagcc catgttcgat
     2221 gagggttccg cataaaatat aaagcatatc gccaagtgca tcagcgacct ccactaaatc
     2281 tccattattg gcggcttcga gatactcttc attttcttct ttcattaaat tgaagcgcaa
     2341 taggtgcttt ttttctccta aatctgcttt gggctgtgct tcaatcccaa gaccaaaagc
     2401 ctggtgaaaa tcaccgactg catctgtgta gtgtttcata aataatccct taataatttc
     2461 tatttttgta ggccttcgca tcccgcttca tcggggaagg cccaatagac caaaaaacgc
     2521 tttattgacc taaaacactg aaatgtttag tactggacaa ataattttct caatctgttt
     2581 ttttgttgca tttgtattga tcattcgcct aagctacaaa aaagaccgcg ccattcacca
     2641 aaagcatttc aaaggaaaac gctgggtttt gttgggtttt ctcgcttttt tcctactgct
     2701 cttactggcc aaaatttggc taaagcaata aaataagtac gtcaatctgc ggacccttgg
     2761 aacgcgctac tgtgtcgcta cagatttccg taggtctggc tgtattccaa catctgggcc
     2821 tcaaacgatt ctggctgaac aatttgaaat ccaataattt ctttttgctc atttaattca
     2881 gggaccaaaa ctggattgac aaatccactg tagggcgcag aggtaaattt gctgttgcgc
     2941 tcaaggactt cagcgtgcaa agtttgatct acttttacac cataatcttc cacaagtgcc
     3001 ttggcggcct cgtaatctcc ttcgctggtg atccgctggg tctcgcgcaa tagctgacca
     3061 aatagttc
//
LOCUS       DPUP01000244           12450 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_2165,
            whole genome shotgun sequence.
ACCESSION   DPUP01000244 DPUP01000000
VERSION     DPUP01000244.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12450)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12450)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12450
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..900)
                     /locus_tag="DHV98_09500"
     CDS             complement(<1..900)
                     /locus_tag="DHV98_09500"
                     /inference="COORDINATES: protein
                     motif:HMM:PF03772.14,HMM:PF13567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06558.1"
                     /translation="MSQPINTRLFEIALGLSIGIVLGHFYDMPKITESLIYLGMGLVL
                     VLSYLLTAHHRPQFWWFFRLWFFSLWALIGGLHYTHQRPAEHGHHEKTKLHALAVQTR
                     LKPWGKTARFMALYYCPEQNVRYKVALVTNDSLLKSFIDLNQTLWTHTPPKVIEKSKN
                     PGGFDSKAYYHSQGIERYIQLSSKEIYCWSKHPMTFKATAQKINARLAQFWQNAPISS
                     ESKALALAIILGQTEDLTPELKTQFAHAGALHVLALSGMHVAMVVLLLKWLLRPLKYL
                     AFGTKIQAFTLILLLWSYATICGL"
     gene            complement(943..1491)
                     /locus_tag="DHV98_09505"
     CDS             complement(943..1491)
                     /locus_tag="DHV98_09505"
                     /inference="COORDINATES: protein motif:HMM:PF00877.17"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HCK06559.1"
                     /translation="MNTPNKVKNHMVSLHKPLVNLILLCSLAISLSGCGSSRNVGHRN
                     ANVPAKNIGLTKKESLLIDQAKSFIGTPYQWGGDSKQGMDCSGLIYQSFNAIDIDVPR
                     TTQELIHQGRKIAPSKLKPGDLVFFKTLKSKAKATHVGLVTQRTKNETLFIHSGTTSG
                     VTISKLGDTYWKKHFVFARRIW"
     gene            complement(1475..>2579)
                     /locus_tag="DHV98_09510"
     CDS             complement(1475..>2579)
                     /locus_tag="DHV98_09510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002678820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HCK06560.1"
                     /translation="YYIISGEASGDLHGSNLIRELNQKDPKAEIRGWGGDLMQAQGMT
                     LVTHYRDLAFMGFIEVLFNLKTILSNIKRCKKDIQAFNPDVLILIDYPGFNMRIARWA
                     KKQNVPVHYYIAPQAWAWKENRVKDIRRDVSALYVILPFEADFFGQRGCPVHFVGHPL
                     RDALLNKPEVKEDQFRSKYNLDQRPIIALLPGSRKQEISAMLPTMAKMVDKFKEYQFI
                     VAGAPSIELSFYQQLIDQSKIQVVTQDTYSILSVAYAAMVTSGTATLETALLNVPQVV
                     CYKGHWLSYQIAKRIIKLSYISLVNLILDAPAVPELIQGQFNDQNLRDHLGQLLSQQG
                     RSAQLKAYDQLLEKLGPLGASERVASLIYEHAQ"
     assembly_gap    2580..2659
                     /estimated_length=80
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2660..2884)
                     /locus_tag="DHV98_09515"
     CDS             complement(<2660..2884)
                     /locus_tag="DHV98_09515"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06561.1"
                     /translation="MSKRIFKGLLVGFIFNGIGVVLCLFIFSLLNNSTIEAMWTGFLE
                     TQRLWMLISLGALPNLLAFFEFLRRNQEYEA"
     gene            complement(2877..3662)
                     /locus_tag="DHV98_09520"
     CDS             complement(2877..3662)
                     /locus_tag="DHV98_09520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011710812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HCK06562.1"
                     /translation="MEQDRPLILVTNDDGITAPGIRTLIKAMLPLGEVVVVAPDAPQS
                     GMGHAITVNDTLYCDPINVDDSLDIREFSCSGTPADCVKIAVNEVLHRKPDLLVSGIN
                     HGSNASINVIYSGTMSAAVEAGTMGIPAIGFSLLDFSYNADFSHTIQPIQHLTKECLT
                     HGMPQGVVLNVNFPKIDQGPFKGIKICRQANAQWVEQFDKRKSPWGRTYYWLSGEFVN
                     LDQGQDTDQWALDNGYISVVPVQYDLTAHYAIPLINQWKLSHE"
     gene            3814..5982
                     /locus_tag="DHV98_09525"
     CDS             3814..5982
                     /locus_tag="DHV98_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail-specific protease"
                     /protein_id="HCK06563.1"
                     /translation="MRILKRNWKILLLGVFVAVASCSFTTKEFNDPSKDRLLIDLISY
                     VLEKGHYDPKELDDTFSLNVWENYIESLDPLKRYFLAQDIEDFRAYSLLIDDQIRAKE
                     LTFFDVVYETYLERSQATKVYYKAILAKPFDYTIQESINTDYDKLEYAQTAQELKEHW
                     RKQLKYTALSNMYDLIEEQKEARGMNPDSIPSDEIRDLIDMKTADLEAKARESALSTL
                     DDNYDFTDDLERKDYFAVYLNAIVSVFDPHTNYFAPPDRDRFDLRMSGKLEGIGARLQ
                     KKNDYITIVEVISGGPVWRGEHLEVGDALIKVRQEDEDEAVSLVGMRVDDAVKLIKGP
                     KGTKVILTVKRVDGTIDEEIIERDVVELAETYAKSTIIEQEGKRYGLINLPAFYFDMT
                     DYGERNAAKDVRLEIEKLKNEQIDGLVMDLRNNGGGSLRTAVDIAGLFIKNGPVVQVA
                     SNGARKEVLKDRDNEIVWDGPLVLMINELSASASEILAAAMQDYKRGIILGSAQSYGK
                     GTVQNMIDLNQWLRNNDLGDMGALKMTTQKFYRVNGGSTQLEGVKSDIVMPDRYSYIE
                     IGERDYDNPLPHDNITAAEYEVWPGYIDYQGTIERSKERLTANAQVNLIEENARWIKT
                     NQNDQELSLTLDEYIAEMQRREQENERFEAIKDYDNKLNYVSLKDDLRLMDQDTTLRE
                     QHRRWQKALAKDVYVEEAVHILADLKMNNIRPSKVAKIQD"
     gene            5986..7092
                     /locus_tag="DHV98_09530"
     CDS             5986..7092
                     /locus_tag="DHV98_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016988228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide transporter"
                     /protein_id="HCK06564.1"
                     /translation="MHAKAKEQSDSWVLKFIKNPLGLLSFILLLLATFLALFAYVLAP
                     DDSPNANNMHLSIAAKPPGFKVLMCVVPNLKAPEVSQWAAFLYGKPKGVLELPITQYK
                     EVANGVEVTLLQATADGTQKRFYAFNELVPPGEKFQLDQVIKPYKFWLGTDKYGRDLL
                     SRMLIGLRVSLSVGFIAVLISLLIGISLGAISGYFGGRTDQIIMWLINVTWSIPTLLL
                     VIAITLALGKGFWQVFIAVGLTMWVEVARVVRGQVMSVKQRQYITAARALGYSDLRII
                     WRHILPNALTPVIIISAANFASAILIESGLSFLGIGAQPPIPSWGSIIKDHYAYIVLG
                     KPYLALVPGFAIMILVMAFMLLGNTLRDVLDVKQ"
     gene            complement(7093..8355)
                     /locus_tag="DHV98_09535"
     CDS             complement(7093..8355)
                     /locus_tag="DHV98_09535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014781332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HCK06565.1"
                     /translation="MRYPQSNSKIDWWIIILYFALVGFGWLNIYSASMSTTQNIWDLN
                     QIYSKQLVWILLSVVLIVFILAVEAKFYERFSSLIYLFALAALVGLYVFGQTVNGATS
                     WYAFGGFSIQPSEFAKTATALALGKFVGDIQTNIRSWQDQWKSLLIMLLPALLIIPQP
                     DPGSALVYAAFILPLYREGLNYLFLTFAAALGLLFIGTLLFEVQGIVLLLVVFLGLYL
                     WQQKRKRKRIKWGQSLIILALAIGFAYSVNYVFYSVFEQRHRDRINLVLGKTVDSNSI
                     GYNTHQSEIAIGSGRWWGKGWLQGTQTKGNFVPEQHTDYIFSTVGEEWGFMGALFLIS
                     LFIALILRVLYRAEKQKSIFGRVYGYSVASIIFIHFMVNIGMVIGLLPTVGIPLPFIS
                     YGGSGLWGFTILLFIFVKLDSANYINIS"
     gene            complement(8355..10229)
                     /gene="mrdA"
                     /locus_tag="DHV98_09540"
     CDS             complement(8355..10229)
                     /gene="mrdA"
                     /locus_tag="DHV98_09540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010522019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HCK06566.1"
                     /translation="MRKSLLFFLVLIVGLTYVGRLFYLQIYDTTYAQLSDNNAIRTVF
                     DYPQRGYIFDRNGQLLLANQPSYDVMVVPRNMKPLDTLEFCALLNLTKEDFISAIERA
                     KRYSPNLPSVVAAQLTKSEFAGLSEKMYKYRGFYIQKRSLRDYQVNHTANVLGYVSEV
                     NDYTIKMNPDYQMGELIGAAGVEKQYEEVLRGQKGIKYIQKDNFNRDIGPYKDGAFDT
                     PAIRGTDITLTIDAKLQEYGESLMANKRGGIVALDPKNGEILALVAAPNYDPALLVGR
                     QRSKNFTKLYYDTIAKPLFDRVLQGEYPPGSPFKTLTALIALQEQVITPNDYVSCYGG
                     YNYGGVKPLGCHDHQTPLALIGGIAHSCNSYFANAYRKTIDKYPTPQEGIERWRQHLR
                     SFGLGDYLGYDLPAGNKGLIPDAEFYNRFYQYPKYKWYSPATISNAIGQGEVLLTPIQ
                     MVHFTSVIANRGYYYTPHIIKNIGGRDSIPEGFTTRQNTTIDPKYFDPVIEGMADVYV
                     YGTASKPYIGIPGIEICGKTGTAENYIKINGKRMQLTDHSVFISFAPKDNPKIALAVF
                     VENGYWGSRWAGRIAGLMTEKYLRDSISRKDMEQYVLKGSLMSEYEKPYSGKPFKINQ
                     "
     gene            complement(10226..10738)
                     /locus_tag="DHV98_09545"
     CDS             complement(10226..10738)
                     /locus_tag="DHV98_09545"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HCK06567.1"
                     /translation="MNSSTRWLSISGRFLVVLALQILVMDRILLFGFANPLVYCYFIL
                     LYPLSGNRVWLIVSSFILGLSVDMFNDTGGAHAAASVFLGWIRPTLLNFSFGVSYQYN
                     TVKIANAPIGQQIIFVLSAVILHHLVLFSLEAGSWTYWLLVLKSTLITSLLSTVLILT
                     AFQFFNRKNT"
     gene            complement(10728..11591)
                     /locus_tag="DHV98_09550"
     CDS             complement(10728..11591)
                     /locus_tag="DHV98_09550"
                     /inference="COORDINATES: protein motif:HMM:PRK13922.9-3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HCK06568.1"
                     /translation="MQQIIEFFIRNKNFLLFLALFSLGYSLTQKAHSGLYTRNIASTN
                     KITGSVFSWLTDKRSYFALREQNEELSAANTQLLLQYYQSKQEHPDRSHGLNAELLSN
                     GAALDSLEGRALNIIQAHVINNTYHRRKNTLTIDKGSKDGVVPDMGVSSPVGIVGIIT
                     HVSEHFSVAQSILNTNSRVVVKSKNSDHFGTLIWDGQRIDNLLLTEIPKIAPLSIGDS
                     LVTDGKSTIFPRGWPVGTVTDIKPAKAQDYLEVSVRPYTDMSSLYHVYLIQRPEAQEI
                     RELEILSQNEF"
     gene            complement(11610..>12450)
                     /locus_tag="DHV98_09555"
     CDS             complement(11610..>12450)
                     /locus_tag="DHV98_09555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HCK06569.1"
                     /translation="KTIRPLKDGVIADFDASEKMINMFIKDIPALKKKWFTPSLRMVI
                     CIPSGITEVEMRAVKESAERVNGKEVYLIHEPMAAAIGIGVDIMQPKGNMIIDIGGGT
                     TEIAVLALGGIVCDKSVKIAGDVFTNDIVYYMRTQHNLYVGERTAEKIKIQIGAATED
                     LELPPDEMAVQGRDLLTGKPKQVQTSYREIAKALDKSILRIEDAVMETLSQTPPELAA
                     DIYNTGIYLAGGGSMLRGLDKRLSQKTDLPVYIAEDPLRAVVRGTGICLKNLAKYKSV
                     LIK"
BASE COUNT         3481 a         2618 c         2802 g         3469 t
ORIGIN      
        1 taatccgcag attgtggcat aggaccagag caataaaata agcgtaaagg cttgaatttt
       61 agtaccaaag gctaaatatt ttaatgggcg aaggagccac ttaagaagta agaccaccat
      121 ggccacatgc atgcccgata gcgccaggac gtgtaaggcc ccggcatggg caaattgtgt
      181 ttttagctct ggcgttaaat cttcagtttg ccccaggatt atcgccaagg ctaaggcttt
      241 agattcactt gatattgggg cgttttgcca aaattgcgcc aatcgagcat taattttttg
      301 tgctgttgcc ttaaaggtca tagggtgttt actccaacaa tagatttctt tactggagag
      361 ttgaatgtat cgttcaatcc cttggctgtg gtaataggct ttggaatcaa atcctccggg
      421 atttttactt ttttcgatga cttttggtgg ggtatgggtc caaagcgttt gatttaaatc
      481 gatgaatgat ttcagcagag aatcgttagt gacaagagca actttgtaac gtacattttg
      541 ctcagggcag taatataagg ccatgaatcg agcggttttt ccccagggtt tcagccttgt
      601 ttgaaccgct aaagcatgca attttgtttt ttcatggtga ccgtgctcgg caggcctttg
      661 atgggtatag tgcaagcctc cgatgagggc ccagagacta aaaaaccaaa gccgaaaaaa
      721 ccaccagaat tgagggcggt gatgagcggt taacaaatag ctgagaacca gtactaaacc
      781 catccccagg taaataaggc tctcggtgat tttgggcatg tcataaaaat ggcccaaaac
      841 aatcccgata cttagcccaa gggctatttc aaaaagtctt gtattgattg gttgtgacac
      901 tccctaaatg acgttaaagg gagttgaatg caagctagtg gtttaccaaa tgcgtcgggc
      961 aaaaacaaag tgctttttcc aataggtatc ccctaattta gaaattgtca ctccgcttgt
     1021 agtccccgaa tgaataaaca gggtttcatt ttttgtcctc tgcgtaacca ggccaacatg
     1081 cgtcgctttg gcttttgatt taagcgtttt aaaaaacact aaatctccgg gctttaattt
     1141 actcggcgca attttgcgcc cttgatggat cagttcttgt gtcgtgcgcg gaacatcgat
     1201 atcaatggca ttaaagcttt ggtaaatgag tccagaacag tccatgcctt gtttactgtc
     1261 tccaccccat tgatacgggg tgccgataaa gctttttgct tggtcaatta ataaggactc
     1321 ttttttggtt agaccgatgt tctttgcagg gacattggca tttcgatgac ccacatttcg
     1381 actgctgcca caaccagaca gacttatggc caatgaacac agaaggatta aattaaccaa
     1441 gggcttatgt aatgagacca tgtggttttt cactttattg ggcgtgttca taaattaatg
     1501 aggcaacgcg ctcactggcc cctaacgggc ccaacttttc aaggagctga tcataggcct
     1561 ttagttgtgc ggatcgaccc tgctggctga gtaattgacc taagtgatcc ctaaggttct
     1621 ggtcattgaa ctgaccttga ataagttcgg gtactgcagg agcatcaagg attaaattga
     1681 ctagagaaat gtaggacagt ttaatgatgc gtttggcaat ttgataagac aaccaatgtc
     1741 ctttataaca aaccacttgc ggcacattta ataaggccgt ttccaatgtg gctgtgcccg
     1801 aggtaaccat cgcggcatag gcaacactga gaatagaata ggtgtcttgg gtgaccacct
     1861 gaatttttga ctgatcaata agttgttgat aaaagctcaa ttctatcgac ggggctccgg
     1921 caacaataaa ctggtattct ttaaacttat cgaccatttt tgccattgtg gggagcattg
     1981 ccgaaatttc ttgcttgcga cttcctggaa gtagggcaat tatcggccgc tgatccaaat
     2041 tgtactttga tcgaaactga tcttctttaa cttcgggctt atttaaaagc gcatcacgaa
     2101 gcgggtgtcc cacaaaatga acgggacagc ctcgctggcc aaaaaaatcc gcttcaaagg
     2161 gcaaaatgac atagagcgca ctaacatcac ggcgaatatc tttaacgcga ttttctttcc
     2221 acgcccatgc ttgaggcgca atatagtaat ggaccggaac attttgtttc ttggcccagc
     2281 gtgcaatacg catgttaaac ccgggatagt caatgagaat caaaacgtct ggattgaagg
     2341 cttgaatgtc ttttttacag cgttttatat tgctcaatat ggttttgaga ttgaataaaa
     2401 cctcgataaa ccccatgaat gccaaatccc gatagtgcgt cactaacgtc atgccttggg
     2461 cctgcatgag atcaccaccc cacccccgga tttcggcctt cgggtctttt tggttgagtt
     2521 cacgaatcag attagatccg tgtaaatctc cagaggcctc tcccgaaatg atgtaatacn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnna gcttcgtatt cttggttacg tcttaaaaac tcaaaaaagg
     2701 ccagtaagtt aggcagtgcg ccgagggaaa tcaacatcca caatcgttgg gtttctagaa
     2761 atccggtcca catcgcttca atagtactgt tgtttaacag actaaaaatg aacaggcaca
     2821 gcacaacgcc aattccgtta aagataaacc caaccaaaag tcctttaaag attcttttac
     2881 tcatgactta acttccattg gttaattaaa ggaatagcat aatgcgccgt caaatcgtat
     2941 tgaacaggaa ccactgagat atagccattg tccaaagccc actgatcggt gtcctggcct
     3001 tgatctaagt ttacaaattc ccccgagagc cagtaataag tgcgccccca tgggcttttg
     3061 cgtttgtcga attgctctac ccattgggca ttggcctgac gacaaatttt gattcctttg
     3121 aagggccctt ggtcgatctt cggaaaattc acattcaaaa caaccccttg aggcatgccg
     3181 tgtgtgaggc attctttggt gaggtgttga atgggttgta tcgtgtgact aaagtctgca
     3241 ttgtaactaa aatccaatag tgaaaagcca atagcgggga tgcccatggt ccctgcttcc
     3301 accgcggcac tcattgttcc actgtagatg acgtttatcg aggcgttgct tccgtgattg
     3361 attccactga ccagaagatc aggcttgcga tgcagcactt cgttgaccgc aattttgacg
     3421 caatctgccg gggtcccact gcagctgaat tctcgaatat ccaaggaatc atcaacatta
     3481 atcgggtcgc aatacaaggt gtcattaacg gtaatggcat gacccatacc gctttgtgga
     3541 gcatcgggcg ccacgaccac gacctcaccc aaaggcagca tggccttaat caaggttctg
     3601 attcctgggg cggttatgcc gtcatcattg gtgaccaata taaggggtct atcttgctcc
     3661 atattttgat ttagggttaa aaatacgctt atctgagggg aaaacacaat ttgaaattga
     3721 tttttaaagt cccttgttta acaaaaaatt agcagcgaat cgctgaggct ccccttttat
     3781 ttttagctat tttagaagac taaaatcgga cgaatgcgaa tattgaaaag gaattggaaa
     3841 attttactct tgggggtgtt tgttgcggtt gcctcgtgca gctttaccac caaagaattc
     3901 aacgatccaa gtaaagatcg actgctcatt gatcttatca gctatgtttt agaaaaaggg
     3961 cattacgacc caaaggaact cgacgatacg ttttcattaa atgtttggga gaactatatc
     4021 gagtctttgg atcctttaaa acgctatttt ttagctcagg acatcgaaga ttttcgggcc
     4081 tacagtttgt tgattgatga tcaaatccgc gcgaaggagc tgaccttttt tgatgtcgta
     4141 tatgagactt atctcgagcg ttctcaggcc actaaggttt attacaaagc tattttagcc
     4201 aagccttttg actatacaat tcaggaaagt atcaataccg attacgacaa gttggaatat
     4261 gcccaaacgg ctcaagaatt gaaagagcat tggcgcaaac aacttaagta tacggctctg
     4321 tctaatatgt atgaccttat cgaagagcaa aaggaggcaa gaggcatgaa tcccgacagc
     4381 atcccctcgg acgagataag agatttgatc gatatgaaaa cggcagatct agaggctaag
     4441 gcacgtgaga gcgcgctttc tactttagac gataattatg actttacaga tgatttggag
     4501 cgcaaggact actttgccgt ttatctcaat gcgatcgttt ctgtatttga cccgcacacg
     4561 aattattttg cgccgccaga tcgagatcga tttgatttgc gcatgagcgg aaaactcgag
     4621 ggaatcggcg cacgactgca gaagaaaaat gactacatca ccatcgtaga ggtgattagt
     4681 ggaggtccag tttggcgtgg agagcaccta gaggtaggtg atgcgctcat taaggtgcgt
     4741 caagaggatg aagacgaagc agtcagtttg gtcggaatgc gtgtggatga cgcggttaaa
     4801 ctgatcaaag ggccaaaagg gactaaagtt attttgacgg taaagcgggt tgatggcacg
     4861 atcgatgagg aaattattga gcgtgatgtt gtagaactcg ccgagactta tgcgaaatcc
     4921 acaattattg aacaggaggg taaacgctat ggcttaatta atttaccggc cttttatttt
     4981 gatatgacgg attatggaga gcgcaatgcg gctaaggatg tacgactcga aatagaaaaa
     5041 ctcaaaaatg aacaaattga tggcctggtt atggatttgc gcaataatgg cggaggctct
     5101 ttgagaacgg cagtcgatat cgccggtcta ttcatcaaaa atggcccagt ggtacaggtg
     5161 gcctctaatg gcgcgcgcaa agaggtttta aaagaccgag acaatgaaat tgtttgggac
     5221 ggcccattgg tgttgatgat taacgaactc tctgcttcag cttcagagat tctcgccgcg
     5281 gcgatgcagg attataagcg cggaattatt ttggggagtg ctcaatccta cggtaaagga
     5341 accgtacaaa acatgattga cctcaaccaa tggttgcgca ataatgatct tggggatatg
     5401 ggcgcactaa aaatgaccac gcagaaattc taccgggtca atggagggtc gacccaactc
     5461 gaaggggtaa agagtgatat tgtgatgcct gatcgataca gttatatcga aattggggaa
     5521 cgcgattatg acaatccact ccctcacgat aatattactg ctgcagagta tgaagtttgg
     5581 ccagggtata ttgattacca gggtaccatt gagcgcagta aagaacgctt gaccgctaat
     5641 gctcaagtaa atcttatcga agaaaatgcc cgatggatta aaaccaacca aaacgatcaa
     5701 gaactcagtc ttacccttga tgagtacatt gcagaaatgc aacgtcgcga acaagagaat
     5761 gagcgatttg aggccattaa ggattatgat aacaagttaa attatgtctc tttaaaggat
     5821 gatttaaggc ttatggatca ggacaccacc ttgcgcgagc aacaccgacg ctggcagaag
     5881 gccttggcta aagatgtcta tgtggaggag gccgttcaca tattggcaga tctaaaaatg
     5941 aacaatatcc gacccagtaa ggtcgctaag attcaggatt aatttatgca tgctaaggct
     6001 aaggagcaat cggactcatg ggttttaaaa tttattaaaa atccattggg gcttttgagc
     6061 tttatccttc ttcttttggc cacatttttg gccctatttg cctatgtcct cgcgccagat
     6121 gactctccca atgccaataa tatgcatttg tctatcgccg caaaaccacc tggatttaag
     6181 gttttgatgt gtgtggttcc taatttaaag gctcctgagg tttcgcaatg ggcggctttt
     6241 ctatatggca aaccaaaagg agttttagaa ttacccatta cgcaatacaa agaagtggcc
     6301 aatggtgtgg aggtgacgct ccttcaggca actgctgatg gaactcaaaa aagattttac
     6361 gccttcaacg agcttgttcc tccgggagaa aaattccaac tggatcaggt cattaagccc
     6421 tataaatttt ggttggggac cgataaatat ggaagagact tgctcagtag aatgctgatt
     6481 gggttaagag tctctttatc tgttggcttt attgccgtat tgatctcact gctcattggt
     6541 ataagtcttg gtgctatttc gggatatttt ggcggccgaa ccgatcaaat cataatgtgg
     6601 ctgattaacg taacttggtc tatccctacc ttattattgg ttattgccat tacgcttgct
     6661 ctgggtaagg ggttttggca ggtctttatc gctgtgggct taaccatgtg ggttgaggtg
     6721 gcacgcgtgg ttcggggaca agtcatgagt gttaaacaaa gacaatacat cactgcggcc
     6781 agagccttgg gttattcaga cctgagaatt atctggcgtc atatactgcc taatgcgctt
     6841 acccctgtga ttattatttc tgcggctaat tttgcctcgg ccatcttgat tgaaagtggt
     6901 ctgagtttcc tagggatcgg ggcgcaaccg cctataccca gttggggcag tatcattaaa
     6961 gatcactacg cttatattgt tttaggaaaa ccttatttag cgctcgttcc gggatttgct
     7021 attatgattt tagtcatggc atttatgctt ttaggcaata cccttagaga tgttcttgat
     7081 gtcaagcaat aattaggaaa tattgatata gttggcgcta tcgagtttta caaaaatgaa
     7141 cagtaaaatc gtaaagcccc acaatcctga accaccgtag ctaataaatg gcaaaggaat
     7201 ccctacagtg ggtaaaagac cgattaccat accgatattg accataaagt gtataaaaat
     7261 tatcgacgct acagaatatc cgtacacgcg cccaaaaatg gatttttgtt tttctgcgcg
     7321 ataaagtaca cgcaaaatca gggcgataaa aaggctgatt aaaaatagcg cccccataaa
     7381 accccattct tccccaaccg ttgaaaaaat ataatcggtg tgttgttcgg gtacgaaatt
     7441 accctttgtc tgtgtccctt gaagccaacc tttgccccac caacgtccgc tcccaatggc
     7501 aatttcactt tggtgggtgt tgtagccaat agaattgctg tccacggtct tgcccagcac
     7561 taaatttatt ctatcgcggt gtctttgctc aaatacagag tagaatacgt agtttaccga
     7621 ataggcaaag ccaatcgcga gggcaagaat aattaaggat tgcccccatt ttatacgctt
     7681 tcgtttgcgt ttttgctgcc atagataaag gcccaaaaag accactaata aaaggacaat
     7741 accctgaacc tcgaacaaga gggttccaat aaacaatagg ccgagcgctg cggcaaaggt
     7801 caaaaacaaa taattcaatc cctcgcgata taggggtaag ataaaagcag cgtaaacaag
     7861 ggcacttcct gggtcgggct gggggataat caacagggca ggcaacagca tgatgagtaa
     7921 ggatttccat tgatcctgcc atgaacgtat attggtttgt atgtctccta caaattttcc
     7981 taaggccaat gccgtggctg ttttagcaaa ttcgctgggc tgaatgctga atccgccaaa
     8041 ggcgtaccaa gaagtggccc cattgacggt ctgtccgaac acataaagtc caaccagagc
     8101 tgctaaggcg aataagtaaa tcaaacttga aaagcgttca taaaacttgg cttcaacggc
     8161 taaaatgaaa acgataagga caacactcaa aaggatccaa accaattgtt tgctgtaaat
     8221 ctgattcaaa tcccaaatgt tttgcgtggt actcatagag gccgaataaa tattcagcca
     8281 gccaaatcca actagggcaa aataaaggat gatgatccac caatcaattt tggagttgct
     8341 ctgagggtaa cgcattattg atttatttta aatggtttcc cggaataggg tttttcatat
     8401 tcactcatta aactgccctt gagcacatat tgctccatgt ctttacggct gatactgtcc
     8461 cggaggtatt tttctgtcat cagcccagca atccggcctg cccatcgcga accccagtaa
     8521 ccattttcaa caaataccgc caaagcgatt ttgggattgt cttttggcgc aaaagaaatg
     8581 aatacagagt gatcggtaag ttgcatgcgc ttgccgttta tttttatgta gttttctgca
     8641 gtgcccgttt tgccacagat ttcaattccc ggaatgccaa tgtagggttt tgaggcggtt
     8701 ccatagacat agacgtccgc catgccttca atcacaggat caaaatactt tggatcaata
     8761 gtggtgtttt gccgcgtggt aaacccctct ggtatggaat cacgcccgcc aatgttctta
     8821 atgatatgcg gcgtgtaata ataaccacga ttggcaatga cactggtaaa atgaaccatt
     8881 tgtatgggcg tcaaaagcac ctccccttgg ccaatagcat ttgaaattgt agccggacta
     8941 taccatttat atttgggata ttgatagaag cgattgtaaa attcggcatc gggaatgagt
     9001 cctttattgc ccgccgggag gtcgtagccc aagtaatcgc caagcccgaa acttctgagg
     9061 tgttgtcgcc atcgttcaat gccttcttga ggggttgggt atttgtcaat tgttttgcgg
     9121 taagcattag caaaatatga gttacaggaa tgggctatgc ctccgatcag ggccaaaggc
     9181 gtttgatggt catgacatcc caagggttta acccctccgt aattgtaacc gccatagcag
     9241 gacacataat cattaggtgt gatgacttgt tcttgtagtg cgataagggc ggtcagggtc
     9301 ttaaacggag atcctggagg gtattcgcct tgaagtacac gatcaaaaag tggtttagca
     9361 atcgtgtcgt aatacaattt cgtaaagttt ttcgatcgtt ggcgtcctac aaggagggca
     9421 ggatcgtagt ttggggcggc caccagagcc agaatttctc cattttttgg atccaaagca
     9481 acgatgcctc cgcgtttatt cgccattaac gactcgccgt attcctgcag tttggcatct
     9541 atggtcaggg tgatatcagt accacggatt gcgggtgtgt caaaagcacc gtctttgtat
     9601 ggacctatat ctcgattgaa attatctttt tgaatatact tgatcccttt ctgcccgcgc
     9661 aacacctctt cgtattgttt ttcaacgcct gcggcaccaa tgagttcgcc catttgatag
     9721 tccgggttca ttttgatggt gtaatcattg acctcggaaa catatcccaa aacattggcc
     9781 gtatggttca cctgataatc tcttaacgag cgtttttgaa tatagaatcc gcggtatttg
     9841 tacattttct ccgagagtcc cgcaaattca ctttttgtca gctgtgcggc caccactgag
     9901 gggagatttg gcgagtacct ttttgcccgc tctatagctg agataaagtc ttctttggtt
     9961 aaattaagta gggcacaaaa ttcaagggtg tcaagcggtt tcatgttcct gggaacgacc
    10021 atgacatcgt aagacggctg attggccaac aggagttgac catttctatc aaaaatatag
    10081 ccccgctggg ggtagtcaaa aaccgttctt atggcattgt tgtccgaaag ttgggcatag
    10141 gttgtatcgt aaatttgcaa ataaaataga cggccaacat aggttaaacc aacaatcaat
    10201 actagaaaaa acagcaggct ttttctcatg tattttttcg attaaaaaac tgaaaagcgg
    10261 tcaggattaa aaccgtgctc agaaggcttg taattagggt tgactttaat accaaaagcc
    10321 aataggtcca agaccccgct tcaagtgaaa acaaaacaag gtggtgtaaa attaccgcag
    10381 agagcacaaa aataatttgt tggccaatcg gggcattggc aattttaacc gtgttgtatt
    10441 gatagctcac cccaaatgaa aagtttaaaa gcgtggggcg aatccaccct aaaaagactg
    10501 aggctgctgc gtgcgcccca ccagtgtcat tgaacatatc tacgctcaag ccgagtataa
    10561 aactcgagac gatcaaccaa acgcgattcc ccgaaagtgg atacaagaga atgaaataac
    10621 aataaaccaa tggatttgca aagccaaaaa gcaatatgcg gtccataacc aagatctgaa
    10681 gtgccagcac cactaaaaaa cgtcccgaaa ttgaaagcca ccgcgtacta gaattcattt
    10741 tgactaagta tttcgagttc gcgtatttct tgagcttcgg gtctttgaat taaatagacg
    10801 tgatagaggc tgctcatgtc cgtataggga cgaacactaa cctctaaata atcttgagcc
    10861 tttgcaggtt tgatgtctgt gactgttcca acaggccatc cccgtggaaa tatcgttgat
    10921 tttccatcgg tgacaagaga gtctccaata gataaggggg caatcttggg aatttcagtg
    10981 agcagtaagt tatcaatgcg ctgtccatcc caaattaacg tgccaaaatg atctgaattt
    11041 ttactcttta ccaccacacg actgtttgtg ttcaaaattg attgagccac agaaaagtgc
    11101 tcggagacgt gcgtgataat accaacaatc cccacaggac tcgagacgcc catatcagga
    11161 acaaccccgt ctttactccc tttgtcaata gttagtgtgt tttttcgtct gtgataagta
    11221 ttattgatca cgtgggcttg tattatgttc aaagcacgcc cttccagaga atccagagcc
    11281 gcaccattgc taagtaactc agcattcagt ccatgactac ggtccggatg ttcctgtttc
    11341 gattgataat attgcaacaa caactgtgta tttgcagcgc ttaattcttc gttttgttct
    11401 ctaagggcaa agtaactgcg tttgtcggtg agccacgaaa atactgatcc agtaatttta
    11461 ttggtcgagg caatattgcg ggtataaagt cctgaatgag ccttttgggt cagggaataa
    11521 cccagagaaa agagcgccaa aaacaacaga aaatttttat tgcggataaa aaattcaata
    11581 atctgctgca tgtcggagga tgtgctcttt tatttgatca atacactttt gtatttggct
    11641 aaatttttca ggcaaatccc ggtgccacga acgaccgctc ttagggggtc ttctgcgata
    11701 taaacgggaa gatctgtttt ttgagaaagt ctcttgtcta gtccacgcaa catggatcct
    11761 cctccggcaa gataaatccc ggtattgtat atatctgctg ctaattctgg aggcgtttgt
    11821 gacaaggttt ccatcacagc atcttcaata cgcaatatag atttgtctag ggctttagca
    11881 atctctcgat aggaggtttg tacttgcttt ggttttcccg tgagtaaatc acgcccttga
    11941 acagccattt cgtctggggg gagttccaaa tcttcagtcg ctgcgccaat ttggattttt
    12001 atcttttctg cagtgcgttc ccctacgtat aaattgtgtt gggtgcgcat gtaataaacg
    12061 atatcattgg taaagacatc ccctgcaatt ttcacagatt tgtcgcagac gataccgcct
    12121 aaggctaaaa ccgcaatttc ggtcgttcct ccaccgatgt cgataatcat gtttcctttt
    12181 ggctgcatga tatccacccc aataccaatg gctgcggcca taggctcatg aatgagatag
    12241 acttctttcc cattcacgcg ttctgcactt tcttttaccg cacgcatctc tacctccgta
    12301 ataccgcttg gaatgcagat gaccatacgc aatgaaggcg taaaccattt tttcttcagc
    12361 gccgggatgt ctttaatgaa catgttgatc attttttcac tggcgtcaaa atctgcaatt
    12421 acaccgtcct ttaaagggcg tattgttttg
//
LOCUS       DPUP01000245            4300 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_38876,
            whole genome shotgun sequence.
ACCESSION   DPUP01000245 DPUP01000000
VERSION     DPUP01000245.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4300)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4300)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..>1450)
                     /locus_tag="DHV98_09560"
     CDS             complement(<1..>1450)
                     /locus_tag="DHV98_09560"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06570.1"
                     /translation="PDLGSSVQDLQLQRGVGSTAFGPGSFGASLNLSTVKAQAEPSLQ
                     IQSSGGSFNTQRHNLKFSSGPLSDGFSFSGRLSKIDSDGYIERASSDLAAYWLQGDYE
                     SKHSKISLIGFGGREITYQSWYGIDQATMDENRRFNPAGAQFDDQGNLEGFYDQQVDN
                     YKQDHVQLLWSQDLSNRWDSQLSLNYTHGRGFFEEYVDAWYSQSVQFSSDADLATYGL
                     NPVVVDGQSISATDLVRRRWLNNNFYALNAHLNYQGPEIEWTSGIYTSYYGGDHFGEL
                     IWARYAPAANPRQRYYSGNGDKNETSIFSKVNWHMDKNWSVYGDLQERWISYRTSGIT
                     SDLVPLNVRQDYAFFNPKFGVTRNFGRDQLLYASFGRSHREPRRSDFEQGVFTPERLD
                     DFELGWRAHGQSTKGLAYKYSVVAYYMDYQNQLVLTGAIDNSGAPIRATSGRSYRAGI
                     ELEGSMELSKKWGLQSAVAWSQNKNLDFVSTFD"
     assembly_gap    1451..1518
                     /estimated_length=68
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1519..1917)
                     /locus_tag="DHV98_09565"
     CDS             complement(<1519..1917)
                     /locus_tag="DHV98_09565"
                     /inference="COORDINATES: protein motif:HMM:PF07715.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HCK06571.1"
                     /translation="MKPLFLTFAVGSLCGSLLAQEPQSKDSTQIQTLSAVLLKATKAK
                     AQDPITQSNLTAQDLAPLNLGQDLPYLIQNLPGVVATSDAGAGIGYTGLRVRGSDATR
                     VNVSINGIPYNDAESQGVFWVNLPDLGSSVQ"
     gene            complement(2232..3755)
                     /locus_tag="DHV98_09570"
     CDS             complement(2232..3755)
                     /locus_tag="DHV98_09570"
                     /inference="COORDINATES: protein motif:HMM:PF14134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4301 domain-containing protein"
                     /protein_id="HCK06572.1"
                     /translation="MDANLSQKITALDKKVDVVQLQLESFKQGFPFLSLVGPATPARG
                     IQVWEETQVQHYQSYFQRKAAELDVVKFVPASGAATRMFGFLFDFLNSFDPNQQRLST
                     YLTQPENQAIAQFYHNLKEFPFVDLIRQKIRQLYPEFKTWTKEKRFYTMVSVLVQEHG
                     LNFGRLPKGLIPFHRYKKNIRTALEEQLYEGAFYAATNDEVYTHFTFSPEHLEGFKDE
                     FSQIKSRLERHTKKNYHISYSFQKDRTKTIAVDLENKPFRDDQGRLVFRPSGHGALIE
                     NLNEVKADIVFIKNIDNVIIQEQVPEMALYKKGLAGILLDYQSQIHEYLKALSSRPES
                     VSMDALTTFLWKSFGLHTPPKSPEDAFELLYRPLRVCGVVANTGAPGGGPFWIQDEHQ
                     IVNLQILEGAQFDQSNSRHRDIFGQATHFNPVDLVCGLRDHEGKPYDLMNYRDQRMSF
                     IAHKTHQGKPLKALEMPGLWNGAMAKWHTVFVAVPIETFNPVKTVNDLLAKAHRPLI"
     gene            complement(3840..>4300)
                     /locus_tag="DHV98_09575"
     CDS             complement(3840..>4300)
                     /locus_tag="DHV98_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015266798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="allophanate hydrolase"
                     /protein_id="HCK06573.1"
                     /translation="TFPSKRSTNDCLSYFSFPQSFPIGAKPKWETTWFESAEIKAYPG
                     ADWNLLSAKQQHQIQTSTFHLSKFSNRMGIQLEELIPNQLEDLPTNPVFPGTVQLTPG
                     GRIIVLMRDAGVTGGYPRILHLSEQGQSQLAQKRVGDPIRFQLMESIAAG"
BASE COUNT         1181 a          991 c          904 g         1156 t
ORIGIN      
        1 atcaaacgtc gaaacaaaat ctaaattttt attttgactc caagccactg ccgactgcag
       61 cccccatttt tttgaaagct ccatcgagcc ctctaattct attccggcac gataacttcg
      121 gccactagtc gctcgaatag gtgccccact attatcgatg gcgcctgtta aaacaagttg
      181 gttttgatag tccatgtaat aagccacaac actgtattta taagccaggc ctttggtcga
      241 ttgaccatga gcacgccaac caagttcaaa atcatccaag cgttctggag taaaaacacc
      301 ctgctcgaaa tcactgcgtc ggggttccct gtgcgaacgc ccaaaagaag cgtagagcaa
      361 ttgatccctg ccaaaatttc tagtcacccc aaatttcgga ttgaaaaatg catagtcttg
      421 gcgcacattc agcggcacta aatcagaagt gatgcctgag gtgcgataac tgatccagcg
      481 ctcttgtaga tccccataaa cagaccaatt tttgtccatg tgccagttta cttttgagaa
      541 aatgctcgtc tcatttttgt ctccattacc agagtaatac cgttgtcttg gattagccgc
      601 tggggcgtat cgcgcccaaa tcaattctcc aaaatgatcg ccaccgtaat aacttgtgta
      661 aattccggag gtccattcaa tctcaggccc ctgataattc aaatgagcat taagggcgta
      721 aaaattattg ttcaaccaac gtcgccgcac taaatctgta gcacttatac tttgaccatc
      781 cacgacaact ggatttaaac cataagtcgc caaatcggca tcactgctaa attgaaccga
      841 ctggctatac cacgcatcca catactcttc aaaaaaacca cgaccatggg tgtagttcaa
      901 tgagagttga ctgtcccaac ggtttgataa atcttgactc caaagcaatt ggacatgatc
      961 ttgtttgtag ttatccactt gttgatcgta aaagccttct aagttcccct gatcatcaaa
     1021 ttgagccccc gcaggattaa agcgccgatt ttcatccatt gtcgcctgat caattccgta
     1081 ccaggactga taagtaatct cacgaccccc aaatccgata aggctaattt tactgtgttt
     1141 ggattcgtaa tctccctgaa gccaataggc cgccaaatca ctagaagcgc gctcaatata
     1201 accgtcactg tcaattttag acaagcggcc agaaaatgaa aaaccgtcgg aaagtggtcc
     1261 agaagaaaat ttgagattat gtctttgggt gttaaaagaa ccaccactgc tctgaatttg
     1321 aaggcttggc tcggcttgag ccttaacggt ggacaaattt aaactcgccc cgaaggagcc
     1381 tggtccaaag gccgtacttc ctaccccgcg ttgcagctgc aggtcctgaa ctgaagaacc
     1441 aagatcgggc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnct gaaccgaaga accaagatcg ggcaaattaa cccaaaatac
     1561 cccctggctt tcagcgtcgt tataggggat cccattaatg ctcacattca cacgagtcgc
     1621 gtcgctcccg cgcacacgaa gccctgtata gcctattccc gcgcccgcat cgctggtcgc
     1681 cacgacaccg ggtaaatttt gaattaaata aggtaaatct tgccccaagt ttaagggcgc
     1741 caaatcttga gcagtaagat tggactgtgt aattggatcc tgtgccttgg ccttggttgc
     1801 tttaagcagt accgcactta aggtttggat ttgagttgag tctttagatt gtggctcttg
     1861 agccaacagg ctgccgcaga gactccctac agcaaaggtt aaaaataaag gtttcattcg
     1921 taaaagattt acgaataaaa ggggccatta ttccgtggtt atttattgat ttttgtcgat
     1981 ttaacgacga taggttcaga atttgcttct gaacatgttc ctaaacagca ttacctgttc
     2041 aaggttctat gggtataatc tcagccgatc ttattctggt attaaggata ataatcagca
     2101 cccctttgag atgttgggac aaatctagat aaagcctatt aaggcacaaa acattatcgt
     2161 aaaaaaatta gtgccctcct tttccgtgtc gggcagcagg taaatcaaag gaccgcttta
     2221 gtggcgttgt tctaaattaa tggcctgtgt gctttggcca gcaaatcgtt tacggtttta
     2281 accggattaa aggtctcaat gggtaccgcc acaaaaactg tgtgccattt tgccatcgcc
     2341 ccattccaca atccaggcat ttcaagagct tttagtggct tgccttgatg ggtcttatgg
     2401 gcgataaaac tcatgcgctg gtcccgataa ttcatcaggt catagggttt cccttcatga
     2461 tcccgcaatc cacaaaccaa gtccacagga ttaaaatgag tcgcctggcc aaagatatcc
     2521 cgatgtctgg agttactctg atcgaattgg gccccttcca aaatctgaag gttcactatt
     2581 tgatgctcat cttgaatcca aaacggacct cctccaggag cgccggtgtt cgccactacg
     2641 ccacaaacgc ggagcgggcg atagagcaat tcaaaggcgt cttcgggtga tttggggggc
     2701 gtgtgtagac cgaaactctt ccaaagaaaa gtcgttaacg cgtccataga aacagattca
     2761 ggtcgagagg acaaggcctt taaatactcg tgaatctggg actgataatc cagtaaaatt
     2821 cccgcaaggc cttttttata aagcgccatt tctggcacct gctcttggat aattacatta
     2881 tcaatattct tgataaacac aatatcggcc ttgacctcat ttaaattttc aatcagagct
     2941 ccgtgtcctg agggcctgaa tacaagccgc ccttgatcat cacgaaatgg tttgttctcc
     3001 agatccaccg cgatcgtctt ggtccgatct ttttgaaagg agtacgaaat atgatagttc
     3061 tttttcgtgt gccgctctaa ccgggatttt atttgagaaa actcatcttt aaacccctct
     3121 aagtgctcag gagaaaacgt aaaatgggta tagacctcat catttgttgc ggcgtaaaaa
     3181 gcaccctcgt agagctgttc ttcaagggcc gttcgtatat tttttttata ccggtgaaag
     3241 gggatcagtc ccttgggcaa gcgcccaaaa ttcaatccat gctcttgaac taaaacagaa
     3301 accatggtat agaagcgttt ttctttggtc caagttttaa attcaggata taactgacga
     3361 atcttctgac gaatcaggtc cacaaagggg aactctttaa gattatggta aaactgagca
     3421 atggcctgat tctcgggctg ggtcagataa gtactgagcc tttgttggtt tggatcaaat
     3481 gaatttaaaa aatcaaaaag aaaaccaaac atgcgggttg ccgcaccgga ggcaggaaca
     3541 aatttgacga catccaattc agcagctttc cgctgaaaat aactttggta atgctggacc
     3601 tgggtttctt cccaaacctg tattcctcgg gcaggagtag ctgggcctac caaactcaaa
     3661 aacggaaaac cctgcttgaa gctttccaac tgcagctgca caacgtcaac tttcttgtct
     3721 aaggcggtaa ttttttggga gaggttagcg tccatggata gttgttttgg aaaagtcttt
     3781 gaatttcaag gtaatttact tttagcaaaa gctcaacact tctccccatt tattcagctt
     3841 tatccagcag caattgactc cataagttga aatcgtatgg gatcgcctac tcttttctgg
     3901 gccaactgag attgcccctg ctcagaaaga tgcaagattc gaggatagcc cccagttacc
     3961 ccagcatctc gcatcaatac gatgattctt cctccagggg tcagctgcac tgttcctgga
     4021 aaaaccgggt tggtcgggag atcctccagt tgattgggaa taagttcttc caactgaatt
     4081 cccatacgat tgctgaattt ggagaggtgg aaggtgcttg tttggatttg atgctgctgc
     4141 ttggccgaca aaagattcca atctgcacct ggataggctt ttatttctgc tgactcaaac
     4201 caggtagttt cccatttagg tttagcccca atgggaaatg attgaggaaa ggaaaaatag
     4261 gataaacagt catttgtact tcgtttggaa ggaaaggtga
//
LOCUS       DPUP01000246            3812 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_13445,
            whole genome shotgun sequence.
ACCESSION   DPUP01000246 DPUP01000000
VERSION     DPUP01000246.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3812)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..724
                     /locus_tag="DHV98_09580"
     CDS             <1..724
                     /locus_tag="DHV98_09580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019039537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RND transporter"
                     /protein_id="HCK06574.1"
                     /translation="LDLENNIMPDILSKYPSVSVSYEGQNREANKLTRSAKTVVPIII
                     LLIYMTIAFTFRSYSQPLLLLFMIPFSFIAVAWGHWIHDLPINILSALGVIALIGIMV
                     NDGLVLIGKFNSYLRDGLNVNQALTKAGRMRFRAIFLTSLTTIAGIAPLLLEKSRQAQ
                     FLIPMAISIAYGIAIATVLTLIMLPILLSFTNDIKRRVHWLIHGELLPSERFERAIKE
                     REFIEQWSEEPQPTNQITEDEA"
     gene            714..2048
                     /locus_tag="DHV98_09585"
     CDS             714..2048
                     /locus_tag="DHV98_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK06575.1"
                     /translation="MKLSLRIFTGLLALGLVGPFSVYGQEITVLTKDQAMAQMLSANF
                     GIQMVQNQKLQAENNTSVLNSGYLPSLAVTSGASYDLQDQEVTFRDGSLNVVDGAETK
                     RLNAALNLNYTLFDGMGRYYNYKRLKQTEKLSDLQVRATIESTLLQLFTVYFELARLT
                     ENETVLKQVLNNTKDRLTRANYGFDFGQNTKLDVLNAEVDLVNDSIALNNNTQQLANT
                     RRDLAVLLNDDLNEMFSVDTAVTFLDDLTLEAMKKTAKSENVRVLIAESNKQLSVYGV
                     KFQRALELPRLGLTGAYGWNEGIFPATGFATKNISSGFSAGLQLSWNVFDGGANRTAL
                     KNAKINLETQELALEEIKTQVDRDVANTFGDFLNRKNAYELLERAISTAQNNYERSLD
                     RFKMGQLTNLELRQAQINLLNARMNANMAKYQAKLSELTYLQACGQLLNVPL"
     assembly_gap    2200..2351
                     /estimated_length=152
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2352..3099)
                     /locus_tag="DHV98_09590"
     CDS             complement(<2352..3099)
                     /locus_tag="DHV98_09590"
                     /inference="COORDINATES: protein motif:HMM:TIGR03753"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06576.1"
                     /translation="MNKNFNIIITAFVIWISLYTNAQIELLASGIFVLSLGLMHGSND
                     INLLQEQLTKNKTKKWILIGVYISLGTVVFALAFYWRVLGLMVFMLFSSYHFGEQHLH
                     NRLSNSKTKAFDFTLYGLVIFSMLFYTHQSDVQFLILQMTGWDITGMPLSYVTVGLIG
                     LLILSWISHFKYFKKEIFEEMFYLLMFYVVFYNTELPLSFAVYFVIWHAIPSIKDQIL
                     VEGYTLNYKSALRYFKQSYLYWLVSVFGIFL"
     gene            3232..>3812
                     /locus_tag="DHV98_09595"
     CDS             3232..>3812
                     /locus_tag="DHV98_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004570062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodopsin"
                     /protein_id="HCK06577.1"
                     /translation="MASKMAPDDYVGFTFFVGCMAMMAASAFFFLSMNGFDTKWRTSI
                     LVSGLITFIAAVHYWYMRDYWASFGESPTFFRYVDWVLTVPLMCVEFYLILKVAGAKK
                     SLMWRMIFLSVVMLVTGYFGETIDRGNAQVWGLISGIAYFVIVYDIWMGSAKKLAEAA
                     GGATLSAHKMLSWFVLVGWAIYPIGYMAGTPGW"
BASE COUNT         1104 a          677 c          777 g         1102 t
ORIGIN      
        1 attggattta gaaaataata taatgccaga catcttgtcc aaatacccct ctgtgagtgt
       61 ttcctatgag ggacaaaaca gggaagccaa taaattaacg cgctctgcga agactgttgt
      121 gccgattatt atcctgttaa tctatatgac gatcgcattt acgtttagaa gttatagtca
      181 gccgctactt ttattgttta tgattccatt tagttttatt gctgtggctt ggggccattg
      241 gattcatgat ttgccgatta acattttatc ggcattgggc gtcattgccc ttatcggaat
      301 tatggtgaat gatggtctgg tattgattgg aaagtttaat agttatttgc gtgatggtct
      361 gaatgttaat caggcgctaa caaaggcggg acgaatgcgt tttcgcgcca tatttttaac
      421 ttccttaacg accattgcag ggattgcccc gcttttgctt gaaaagagta ggcaagcaca
      481 gtttttgatt cctatggcca tttcaatcgc ctatggtatc gcaattgcta ccgtacttac
      541 cctgattatg ttgcccatat tattgtcctt tacaaatgac ataaaaagaa gggtccattg
      601 gttgattcac ggggaacttt tgcctagtga acgattcgag cgcgctatta aagagcgtga
      661 atttatagag cagtggtccg aagagccaca gccgacaaat caaattaccg aagatgaagc
      721 ttagtttacg aatttttaca ggccttttgg ccttaggtct tgtaggcccg ttttcagtat
      781 acggtcagga gattactgta ttgaccaagg accaggccat ggctcaaatg ttatctgcca
      841 acttcgggat tcaaatggtg caaaatcaaa agttacaggc agaaaataat acctctgtgc
      901 tcaattcagg atacctgccc agtttagcgg tgacctccgg agcgagttat gatcttcaag
      961 atcaggaagt aacttttcgc gatggttctt tgaatgtcgt tgatggggct gaaaccaaac
     1021 ggctcaatgc cgcgctcaat ctcaattata ccctatttga tggtatgggc cgctactata
     1081 attacaaacg cctgaagcaa actgaaaaac tcagtgactt acaagtacgt gcgacgattg
     1141 aatcgacctt gttgcagtta tttacagttt actttgaatt ggctcgtttg acagaaaacg
     1201 aaacagtttt aaaacaagtc ctaaataata ccaaagaccg tctgacccgt gcgaactacg
     1261 gatttgactt cgggcaaaac accaagcttg atgtgcttaa tgcagaagtt gatttggtaa
     1321 atgacagtat tgcgctaaat aataatacgc agcaactcgc caatacaaga cgtgacttag
     1381 cggttttact caacgatgat ttaaatgaaa tgttttcagt agatacggcg gtgacctttt
     1441 tggatgattt gactttagag gccatgaaaa agaccgcaaa atctgagaat gttcgtgttc
     1501 ttattgcaga atcaaacaag caattaagtg tctatggggt taaatttcaa cgcgctttag
     1561 aattgcctag acttggactt actggagcct atggttggaa tgaaggcatt tttcccgcga
     1621 caggttttgc caccaaaaat ataagttcag gattttctgc aggacttcaa ctgagttgga
     1681 atgtttttga tggtggagcc aatcgcactg cgttgaaaaa cgctaagatc aaccttgaga
     1741 ctcaggaatt ggctttggaa gaaattaaaa ctcaagttga ccgagatgtg gccaatactt
     1801 ttggagattt tttaaataga aaaaacgctt atgaactttt agaacgtgcc ataagtactg
     1861 cgcagaataa ctatgagcgc tctctagatc gctttaaaat ggggcagttg actaatttag
     1921 aattacgcca agcgcagatt aatttactca atgccagaat gaatgccaat atggccaagt
     1981 accaggcgaa gttgtccgaa ctcacctacc tgcaagcctg cggtcagttg ctcaatgtcc
     2041 ctctttagtc ttttgggatt gatttagctt ttgaaaaagc cgtgtaatca ataaaatatg
     2101 aggaaaagtt atggccacta gggcggcaaa tagaatggga aacaatccat ttccgatcaa
     2161 gtcgtagact ttatataata agaaaatccc aaatacagan nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nataagaaaa tcccaaatac agagacgagc caatagaggt aactttgttt
     2401 gaagtaccgc agtgccgatt tgtaattaag cgtatatccc tcgactagaa tctgatcttt
     2461 tatcgaagga atggcatgcc aaatgacaaa atataccgca aaagataaag gaagttctgt
     2521 attgtaaaag acgacataga acattaaaag gtaaaacatt tcctcaaaaa tttctttttt
     2581 aaagtatttg aagtggctta tccaagaaag aatcaaaaga ccaatcaagc cgaccgttac
     2641 atagctcaga ggcataccgg taatatccca gccagtcatt tgaagtatga gaaattggac
     2701 atcactttgg tgggtgtaaa acagcattga aaatatgact aggccataaa gtgtaaagtc
     2761 aaaggccttg gtttttgagt tggataatct attgtgtaaa tgttgttctc caaaatggta
     2821 gctgctaaag agcataaaaa ccatcagtcc taatacccgc caataaaagg ccaaagcgaa
     2881 caccacagtc ccgagactaa tataaacacc gattaaaatc cattttttcg ttttgttttt
     2941 ggtcaactgc tcctgcaaaa gattaatgtc gttggatcca tgcattaggc caagcgaaag
     3001 aacaaaaatt cctgaggcta gtagctcaat ttgtgcattt gtgtagaggg aaatccaaat
     3061 tacaaatgcc gtaattatta tgttaaaatt tttattcatt ctgaaattat tctcgcctaa
     3121 attacgaaaa atgaaaaatt tatttgccag tcaaaaataa atgtttaact ttaatcaaat
     3181 tatgttaaac aaatttaatt aaccatgaca gcattattaa ctacattaac tatggcgtcc
     3241 aagatggcgc ctgatgatta tgttggtttt acattctttg taggatgtat ggccatgatg
     3301 gcagcttctg ccttcttttt cctttcgatg aatggatttg acaccaaatg gagaacttcg
     3361 attctcgttt cgggtctgat taccttcatc gcagcagtac actattggta catgcgtgat
     3421 tattgggctt cttttggaga atccccaaca tttttccgct acgtagattg ggtccttacg
     3481 gttccattga tgtgcgtaga attttattta atccttaaag ttgcaggagc caagaagtct
     3541 cttatgtggc gtatgatctt cctttcggtt gtcatgcttg tgaccggata tttcggagaa
     3601 acaattgacc gcggaaatgc acaggtttgg ggtcttattt caggtattgc atacttcgta
     3661 attgtgtatg atatttggat gggatcagcc aaaaaacttg ctgaggctgc aggtggtgct
     3721 accctttcgg ctcacaaaat gcttagttgg tttgtccttg taggatgggc gatttatcca
     3781 attggatata tggctggtac tccaggatgg ta
//
LOCUS       DPUP01000247            4191 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_11790,
            whole genome shotgun sequence.
ACCESSION   DPUP01000247 DPUP01000000
VERSION     DPUP01000247.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4191)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4191)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4191
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..636
                     /locus_tag="DHV98_09600"
     CDS             <1..636
                     /locus_tag="DHV98_09600"
                     /inference="COORDINATES: protein motif:HMM:PF02875.19"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan synthetase"
                     /protein_id="HCK06578.1"
                     /translation="IKKIPYSVPVYHIEEGVTYLETPEGPMPVEVFGAHNLSNLEGAR
                     WICQLMGVDSEDFYEAIASFKGASKRLELLVSRPDFIVYKDFAHAPSKVSATMSAVRQ
                     QYPNHKLVACLELHTYSSLSQDFIGEYGHTLDLADEAVVFYQPETLALKNRPPIPPEM
                     VRSAFKRQDLKLIKTSGALSTYIEGQNARPLVLLLMSSGNYGGLDLKRVFG"
     gene            736..1389
                     /locus_tag="DHV98_09605"
     CDS             736..1389
                     /locus_tag="DHV98_09605"
                     /inference="COORDINATES: protein motif:HMM:TIGR00608"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06579.1"
                     /translation="MIRPQDSIWQEGFESLSTSELIALLIKGNAPHWQAELLGAQLMA
                     KVGQNLATLERTSLAELTAIKGIGRAKALTILAAFELGRRRRHDVRRLTQKMESSRSV
                     YEFMRPSLGHLDHEEFWVLFLNAAHGVEGISQLSKGGVTSTVVDLRLLIKKALDYRAV
                     AMILIHNHPSGAVAPSESDKKLTRRITQAAQQMDLRVLDHLIVAEKDYFSFADAQLI"
     gene            1393..2688
                     /locus_tag="DHV98_09610"
     CDS             1393..2688
                     /locus_tag="DHV98_09610"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06580.1"
                     /translation="MLLIYVVKIGPRLDYVFKQICGRILGLEFELTTNLEHFIAHNGP
                     KMSYGKAPLGNEFFVQSHDLLFSQGLEDWEIHVRLWDTTVGFFATGENSVLPFDIFAT
                     SFYLLSRYEEYLPHVKDNLGRFPYTESLAWKHGFLNQPVVDLWAFKFWGCLQKVFPEL
                     EQNKRTIQNTVVVEAKRPFEFLYRGFLRTMVGFFSDLYKLRLGRLVWRAQVLLGSRKD
                     PYDTFKWILKLSKSSKTRVVLFFLLGEGYTFRETLKTNRQGYVNLIKFVADYLEVGLI
                     LSYHFLSDLPRLINEKQQLESYTRRVLKSSFNDRQKVKLPEVYRNLVEAEIAQDYSMY
                     YFNQFGFRAGTCTSFLFYDLEYEVKTPLELMPVVGKTLALREQTVGNIEQTFTTVYRA
                     VQSVEGHFIMVFSNRDFEPNKDNKIWRYLFLEKLIKSAG"
     gene            2678..3364
                     /locus_tag="DHV98_09615"
     CDS             2678..3364
                     /locus_tag="DHV98_09615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014782622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="noncanonical pyrimidine nucleotidase, YjjG
                     family"
                     /protein_id="HCK06581.1"
                     /translation="MQGKVKHIFFDLDHTLWDFDKNSGLAFEALFAQYGIDIELTTFL
                     KIYEPINYAYWAKFRVDAISKTDLRRGRLRDSFAHFNLHIPEIQIDAMAETYIEELPK
                     NNHLFDGVIHTLEELYPYYSMHIITNGFHGVQHNKLHQSGLMDYFKSVTTSEEVGLKK
                     PHPVIFQKALTKAKAEPKESLMVGDTFEADILGAEAVGMYTLFFNYWSVEVPSHYSTI
                     GNIREITLHL"
     gene            3393..3944
                     /locus_tag="DHV98_09620"
     CDS             3393..3944
                     /locus_tag="DHV98_09620"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06582.1"
                     /translation="MKQFISHFIGVLLLILSVSSCVKDTDFDQFDQTLLTPVVDLNLI
                     FWEVQAPSFNDTSGNLPLGFVRDTTEIRFLDDPDTQESVVRADFLFEFENTSDADYDL
                     VIDFVSLSGQVTYTLQTTIETGTLNTPWQQTILDEIMAPEVNAITQAGLIAISATAQG
                     TPPEQGNLKMKSKVRFYLEISGQ"
     gene            3977..>4191
                     /locus_tag="DHV98_09625"
     CDS             3977..>4191
                     /locus_tag="DHV98_09625"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06583.1"
                     /translation="MLMDPAFGQNKQLIYGLDEVPQNLMLNPGGVVEGRAFFGVPLLS
                     GIHVNGGSSGFSLFDLAASDGKLPAER"
BASE COUNT         1181 a          835 c          918 g         1257 t
ORIGIN      
        1 attaaaaaaa taccctattc tgtgcccgta taccatatcg aggaaggggt cacttatctc
       61 gagaccccgg aagggccgat gcccgtcgaa gtatttggcg ctcacaacct aagtaatcta
      121 gaaggggccc gctggatctg tcaactcatg ggcgtcgatt ctgaggactt ttatgaggcc
      181 attgcttcgt ttaaaggagc gagcaaacga ttagaactct tggtaagcag gccagacttt
      241 atcgtctata aagattttgc ccatgcgccc agtaaagtca gtgccactat gagtgcggta
      301 cgccaacagt atccaaatca caaacttgtt gcgtgcctag aattacatac ttacagcagt
      361 ctttctcaag attttatagg agaatatggt catacacttg atttggctga tgaggccgta
      421 gtgttctatc agcccgaaac gcttgcttta aaaaatagac cacccattcc gcctgaaatg
      481 gttcgatcgg cctttaagcg acaagattta aagttaatta agacctcagg ggcgctttca
      541 acttatatcg aaggccaaaa tgcgcgccct cttgttttat tactaatgag tagtggaaat
      601 tatggaggac tggatttaaa acgagttttc ggataatttt tgaattatcc cttttcaatt
      661 tataaaacat cagttttcat aagataaaat catattgatt tgtagtacgc tctccagcta
      721 aaaaaacaat caattatgat ccgtccacaa gattctattt ggcaagaggg gtttgaatca
      781 ttatcaacct cagaacttat tgcactgtta atcaaaggaa atgcgcccca ttggcaagcc
      841 gaattactcg gggcgcaact catggccaaa gtcggacaaa acttggctac tttggagcgc
      901 acatcgttgg ctgagttaac cgcgattaaa ggtatcggcc gtgcaaaggc ccttactatt
      961 ttggcagcct tcgagttggg gcgaagacgc cggcacgatg tgcgacggct aacccaaaaa
     1021 atggaatcga gtcgatctgt ttatgaattt atgcggccga gtttagggca tttagaccac
     1081 gaagaatttt gggtgctttt tctcaacgct gctcatggtg ttgaggggat ctctcaactc
     1141 agcaaaggag gggtgacttc tactgtggtc gatttgcgct tactcataaa aaaggcgtta
     1201 gattacagag ctgtggccat gatccttatt cacaatcacc ccagcggtgc tgtcgcacca
     1261 agtgaatcgg ataaaaaact aaccagacga atcactcaag cggcacagca aatggatttg
     1321 cgggttttgg atcatcttat tgtggctgaa aaagattatt ttagcttcgc tgatgcccaa
     1381 ttaatctaat gcatgttatt gatttatgtg gtcaagattg gtccgcgttt agattatgtc
     1441 tttaaacaaa tctgtgggcg aatcttaggt ctagaatttg aacttacaac aaaccttgaa
     1501 catttcattg ctcacaacgg gcccaaaatg tcttatggta aggccccttt gggtaatgaa
     1561 ttttttgtac aaagccatga cctcttattt agtcaaggat tagaggattg ggaaattcac
     1621 gtaaggctat gggatacaac ggtaggtttt tttgcaacag gagaaaacag tgtcctccct
     1681 tttgacatct ttgccacttc gttttacttg ttgagtcgtt atgaagaata cctgccacac
     1741 gttaaagata atctgggccg ctttccctac acagaaagtt tggcctggaa acacggtttt
     1801 ttaaaccaac cggtagtcga tttatgggcg tttaagtttt ggggatgtct acaaaaggtc
     1861 tttcctgagc ttgagcaaaa caaaagaacg atacaaaaca ctgttgtggt tgaggccaaa
     1921 agaccctttg aatttctata ccgaggattt ctaaggacaa tggtggggtt tttcagtgac
     1981 ctttataagc tccgccttgg tcgattggtt tggcgcgctc aagttctttt aggatcgcgc
     2041 aaagatcctt atgacacctt taagtggatc cttaaacttt ctaaatcgag caagacgcgt
     2101 gtggtcctgt tttttttgct cggagaagga tacaccttta gggaaacgct aaaaacaaat
     2161 cggcagggtt atgtgaacct aatcaaattt gtcgcggatt atttggaagt gggtttgatc
     2221 ctttcttacc attttctttc tgatttgccg cgattaatta atgagaaaca gcaactcgag
     2281 tcttataccc gccgagtgct aaagtcaagt ttcaatgacc gtcaaaaggt aaaactcccc
     2341 gaggtttaca gaaacctagt tgaagcggaa attgctcaag attacagcat gtattatttt
     2401 aatcagtttg gatttcgagc gggtacctgc acttcttttt tattctatga tttggaatat
     2461 gaagttaaaa cacctttgga gttgatgcct gtagtgggca aaactttggc gctacgagaa
     2521 caaactgtgg gcaacattga acaaaccttt accacagttt accgcgcagt tcaatccgtg
     2581 gagggacatt ttattatggt tttttcgaat cgggattttg aacccaataa agacaataaa
     2641 atatggagat atttgttctt agaaaaactc atcaagagtg cagggtaaag taaaacacat
     2701 ttttttcgat ttagatcata ccctttggga ttttgacaaa aattcaggtc tcgcttttga
     2761 agccttgttt gcgcaatatg gtatcgatat tgaattgacc acatttctca agatttatga
     2821 gccaataaat tacgcctatt gggcaaaatt tcgcgttgac gcgatctcaa aaacagattt
     2881 aagacggggg agactaaggg atagttttgc tcattttaac ctccatatac ctgagatcca
     2941 aatcgatgct atggcggaaa cctatattga ggaactgcca aagaacaatc atttgttcga
     3001 tggagtgatt catactttag aggagttata tccctattac agcatgcata ttatcaccaa
     3061 tggttttcat ggagttcaac acaataaatt acatcagagt ggtctaatgg actatttcaa
     3121 atccgtgacg acatctgaag aggtagggtt aaagaagcct catcctgtta tatttcaaaa
     3181 ggcccttaca aaagccaagg cagaaccaaa agagagtctt atggtgggcg atacttttga
     3241 agccgatatt ttaggtgccg aggctgtagg gatgtacacc ttgtttttta attactggtc
     3301 tgtggaggtg ccttctcatt atagtaccat tggtaatatt cgagaaatca cattacattt
     3361 gtaatcccaa atctgacata acctactgtt ctatgaagca attcatttcc cattttattg
     3421 gcgttttatt acttattcta tccgtaagtt cttgcgtcaa ggataccgat tttgatcaat
     3481 tcgatcagac cttactcacc cccgtggtgg atttaaattt gatattttgg gaagtccaag
     3541 cgccttcttt taacgatacc agcggcaatt tgcctttggg atttgttcga gatacgacag
     3601 aaattcgctt tctcgatgac ccagatactc aagagagtgt cgtcagagct gattttcttt
     3661 ttgaatttga gaacacgagt gatgctgact atgatttagt gattgatttt gtaagtcttt
     3721 cgggccaggt aacttacacg ctccaaacaa ctatagagac tgggacacta aacacaccat
     3781 ggcagcaaac gatcctcgat gagattatgg cccctgaagt caatgccatt actcaggctg
     3841 gtcttattgc cataagtgcg accgcacaag gcacccctcc tgaacaaggg aaccttaaaa
     3901 tgaaatccaa agtgcgtttc tatttagaaa tttccggtca atgaggtatg tcactttgtt
     3961 tctggtgagt tgctacatgc ttatggaccc ggcatttggt cagaacaagc agttgatcta
     4021 tggtctcgac gaagtccctc aaaatcttat gcttaaccca gggggtgttg tcgagggcag
     4081 ggcatttttt ggggtaccct tactttctgg tattcatgtt aatgggggct cttcaggttt
     4141 ttcactattt gatttagcgg cttcagatgg caaattgcca gcggagcgca t
//
LOCUS       DPUP01000248            5462 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9032,
            whole genome shotgun sequence.
ACCESSION   DPUP01000248 DPUP01000000
VERSION     DPUP01000248.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 5462)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 5462)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5462
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..288)
                     /locus_tag="DHV98_09630"
     CDS             complement(<1..288)
                     /locus_tag="DHV98_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019668810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HCK06584.1"
                     /translation="MMSIVAIVGRPNVGKSTFFNRLIQRREAIVDAVSGVTRDRHYGK
                     SDWNGKSFSLIDTGGYVVGSDDIFEAEIDKQVELAIGEADVIIFMVDVSHGV"
     gene            complement(348..1232)
                     /locus_tag="DHV98_09635"
     CDS             complement(348..1232)
                     /locus_tag="DHV98_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HCK06585.1"
                     /translation="MAHRAGFVNIIGNPNVGKSTLMNAFVGERLSIITSKAQTTRHRI
                     LGIVNGADFQAVFSDTPGIIKPAYALQSHMMEFVKSAFDDADVLIYMVELGEKDLKDE
                     AFFERINNAKIPVLLLLNKIDLGNEDKLEEAFTYWQQKVPNAEVFGISATENFGITEV
                     FERIVALLPESPEFYPKDQLTDKPERFFVNEIIREKILLQYKKEIPYSVEIDTEEFFE
                     DEDIIRIRSVIMVERETQKGIIIGHKGHPLKWVGIEARKDLERFFGKQIYIKLVVKVN
                     KNWRSDPKQLRRFGYDAQ"
     gene            complement(1267..>1953)
                     /locus_tag="DHV98_09640"
     CDS             complement(1267..>1953)
                     /locus_tag="DHV98_09640"
                     /inference="COORDINATES: protein motif:HMM:PF00332.16"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK06586.1"
                     /translation="EVNNPNCGWDAGVYPPEILKANALKNQQQVNDLIQIAGQYPARI
                     FALAVGNEACVSWTDHLVTVEKIKAYVLAVKAQCIQPVTVCDNYVPWLDVMQPLVACV
                     DFIAIHTYPVWEYQEIDNALAVTQSDYKKISDKYPNVPVIITEAGWPTQANGSGIPVH
                     FAHPMAQKTYYQALNRWALESQVLVFWFEAFDEPWKGSDDPAEPEKHWGLYTVDRKPK
                     RVLIQAKYKR"
     assembly_gap    1954..2088
                     /estimated_length=135
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2089..2358)
                     /locus_tag="DHV98_09645"
     CDS             complement(<2089..2358)
                     /locus_tag="DHV98_09645"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK06587.1"
                     /translation="MHYDQFFSIQAGPGVCYSGYRVNQYPGGPVPTYQEVKEDLLLVA
                     QHFSYIRLYSVDEHTKMVLELLEKEDIPLKVMIGAYLEAEVNNPHC"
     gene            complement(2393..3277)
                     /locus_tag="DHV98_09650"
     CDS             complement(2393..3277)
                     /locus_tag="DHV98_09650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007093902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HCK06588.1"
                     /translation="MSYRKEKMMSLAGVQVDALDREGLKEQSRVLLNEKMHGICFSPY
                     EGVQKPGDPISEAQIRRKLALLQPYTKWIRVFSCTQGNEQIPVLAREYGFKTLVGAWL
                     GDDLEKNEEEVAALVSLANKGYVDVAAVGNEVMYRKELQEEALIDYINRVKKALPEIP
                     VGYVDAYYEFTNRPKITEVCDVILANCYPYWEGCGIDYSLLYMKQMYYQAQAAAPGKK
                     VIITETGWPSEGESLGAAVPGYENALKYFINAQTWSQTQGIEMFYFAAFDESWKVDAE
                     GTVGAYWGLWDQHEQLKF"
     gene            complement(3302..4708)
                     /locus_tag="DHV98_09655"
                     /pseudo
     CDS             complement(3302..4708)
                     /locus_tag="DHV98_09655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020080061.1"
                     /note="too many ambiguous residues; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     assembly_gap    4206..4251
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(4764..>5462)
                     /locus_tag="DHV98_09660"
     CDS             complement(4764..>5462)
                     /locus_tag="DHV98_09660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019387964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase family 30"
                     /protein_id="HCK06589.1"
                     /translation="EGLDHWVSVMYQNEEHARYFDGTAVHWYESTVDYFPQALERAHE
                     AAPDKFLIQTEACCDAQTPVWGEDDWYWREEATDWGYTWREPEKKYLHPKYAPVHRYA
                     RDIIGCLNHWVDGWIDWNMVLDRQGGPNWFENWCIAPVLVDPDQDAIYFTPLYYIMCH
                     FSKFIRPGFVVIEHQCTDKDIMATAIKGGENHYVVVVFNPTNDIKRINIKGNDQLCRV
                     VLKPQAIQTILINN"
BASE COUNT         1527 a         1262 c         1031 g         1461 t
ORIGIN      
        1 taccccgtga ctcacatcga ccataaaaat gatgacatct gcctcaccaa tggcgagctc
       61 aacctgcttg tcgatttcag cctcaaaaat atcatcactc ccaacgacat atcctccagt
      121 atcgattaac gaaaaactct ttccgttcca atcacttttt ccataatggc gatcacgggt
      181 gacaccgctg acggcatcaa caatagcctc gcgtctttgg attaaacgat taaaaaaggt
      241 ggatttgccc acattgggac gtccgacaat agcaacaata ctcataatga taaattcgag
      301 gcaaagttag tggataaatg cggataagtt aaaatagtca cgcccgatta ttgcgcgtca
      361 tagccaaatc gacgcagttg tttggggtca ctgcgccaat ttttgttgac tttgaccact
      421 aatttgatat aaatctgttt accaaagaag cgctctagat cctttctggc ttctatgccc
      481 acccatttca ggggatgacc tttatgcccg atgataatgc ccttttgagt ttcgcgctcc
      541 accataatca cagaacggat gcgaatgatg tcttcatctt caaagaattc ctcagtgtca
      601 atttctaccg agtaagggat ctcttttttg tattgaagta aaattttctc gcggataatt
      661 tcattgacaa aaaatcgctc tggcttatcg gtaagctgat ctttgggata aaattctggc
      721 gactcaggga gcagggcaac tattcgttca aaaacctcag taattccgaa attttccgtg
      781 gcagatatac caaaaacctc agcattgggg accttttgtt gccaataagt aaacgcctct
      841 tctagtttat cttcgttgcc taaatcaatt ttattgagca acagcaacac cgggattttt
      901 gcattattta tccgctcaaa aaaagcttca tccttgagat ccttttctcc gagttccacc
      961 atgtagatta ggacatcagc atcatcaaaa gccgacttca caaactccat catatgggac
     1021 tgaagcgcat aagcaggctt gataattcct ggagtatcac taaatacggc ctgaaaatcg
     1081 gcgccattca ctatacccaa aattcgatgt cgggtcgttt gcgctttact ggtgataatg
     1141 gataagcgct ctccaacgaa tgcgttcatc aaagtactct tacccacatt agggttgcct
     1201 atgatattta caaatccagc acggtgggcc atataaaaag ttttgacaaa gttacgtcaa
     1261 gtttccttag cgcttgtatt tagcctggat caaaacgcgt ttgggcttgc gatcgactgt
     1321 gtagaggccc caatgctttt ccggttctgc cggatcatca gaccccttcc atggctcatc
     1381 aaaagcctca aaccaaaaga caaggacctg agattccaaa gcccatcgat ttaaggcctg
     1441 ataataagtt ttttgcgcca taggatgggc aaaatgaacg gggattccgc tgccgttggc
     1501 ctgtgttggc caccctgctt cagtaatgat cacagggaca ttcgggtatt tgtcgcttat
     1561 ttttttgtag tcactctggg ttaccgctaa agcgttgtca atctcttgat attcccaaac
     1621 gggataagtg tgtatggcaa taaaatcgac acatgcgaca agtggttgca taacatcgag
     1681 ccatggcaca taattatcac atacggtaac cggttgaata cattgagctt ttacagccaa
     1741 aacatacgcc ttgattttct caacagtcac taaatgatcg gtccaagaaa cacaagcttc
     1801 attgcccacg gcaagagcaa agattcgtgc tggatattgg ccagcgatct gaattaaatc
     1861 attgacctgt tgttgatttt tgagcgcatt ggcctttaga atttcaggag ggtatacccc
     1921 tgcatcccag ccgcaattgg gattattgac ctcnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnngc aatggggatt
     2101 attgacctcg gcctcgagat aagccccaat cattactttt aggggtatat cttctttttc
     2161 cagaagttca aggaccattt tggtgtgctc atcgacactg taaagacgga tataagaaaa
     2221 gtgctgggcc accaaaagta aatcttcctt tacttcttgg tacgttggga caggccctcc
     2281 cggatattga tttacgcggt atccggaata acagacccca ggcccggctt gaatagaaaa
     2341 aaattgatcg taatgcaagg ccgctattct ttgacttttg ataagatacg tattaaaact
     2401 tcaattgctc gtgctgatcc caaagacccc aataagcccc tacagtccct tcggcgtcaa
     2461 ctttccaaga ctcatcaaag gcggcaaaat agaacatctc tatcccctgt gtttgcgacc
     2521 aggtctgggc attgataaaa tattttaagg cgttttcata accgggcact gctgcaccca
     2581 atgattcccc ttcactaggc cagcccgttt ctgtaatgat tacttttttt ccaggggccg
     2641 cagcttgggc ctgataatac atttgtttca tataaagcag cgaataatca atgccgcaac
     2701 cttcccaata cggatagcag ttggctaaaa tcacatcgca cacctcggtg atttttggac
     2761 gatttgtaaa ctcataatag gcgtccacat agcctacagg aatctccggt aaggcttttt
     2821 ttacacgatt tatatagtcg atgagcgctt cttcttgaag ttctttgcgg tacataacct
     2881 cattacccac agcggcaaca tcaacatatc ctttgttggc caaggacacc aatgcagcaa
     2941 cctcttcttc gtttttctct agatcatccc caagccaggc gcctaccaga gttttaaagc
     3001 catattcgcg cgccaaaaca ggaatctgct catttccttg agtgcacgaa aacacccgaa
     3061 tccatttggt gtaaggttgt aataaagcaa gttttctacg aatttgtgct tcggaaattg
     3121 ggtctccggg cttttgcacg ccttcataag ggctaaaaca aattccgtgc attttttcat
     3181 tgagcaaaac ccggctttgc tcctttaatc cttctcgatc taaagcatcg acttgaacgc
     3241 cggccaaaga catcatcttt tcttttctgt acgacatgaa ttattaatta aagtttcttt
     3301 tttatgattt ttttctttct tctagtttgg ctttaatttc ttgagccttt tcttcagtga
     3361 tatcatagct cttcatcatc aaaatagccc cgataacccc agcaataggt aataatgtat
     3421 agaacatgcg cattccagtg actgcggact cggttacatt ttcggtatca aatcctacga
     3481 cagacaggat gaaaccgccg agcagagccg caataccaaa gcccaattta accatccacc
     3541 aatagactgc gcccaatacg ccttcgcgac gtttaccggt ttgaagttca tctaaatcac
     3601 agacatctgc agtcatactc atcatgatgg taaacaagct cccgatacca aatgaatgaa
     3661 acggcaaggc aaataaaaat aaatacggtt taccgggaac aaataaaaac cagaataaaa
     3721 cataaccgat tattgaaatg agttgagaca caataaaggc cttcttttta cccatgactt
     3781 tggacatgcg cgtgataatt ggaatgacca aaaaggtcgt aacaagggcc cctaccgatc
     3841 catgcatggc aggccaattg cccgcacttg cgggatcact gttaaataaa taatggacaa
     3901 taattaaaaa ggtatacgcc gcaattacat taaatgaatt aaaaatcaaa aaggtggctc
     3961 cggcaatttg acgaaactgc ttgattttaa acgcttcaaa agcggaagta aaaatccctt
     4021 taatacttct gatcacataa ggggcactga tcggcaaaaa gtcatctcgg tctaaagtcg
     4081 attttccttt taggaaaatc gcgggaatta atgcgaaaat cgtacaagga atagcgaccc
     4141 atatcgataa atctcttacc ccttggtccg cgccctccgg gaaccaagac tggtcgtaaa
     4201 ggatcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ncccaggccc
     4261 attgacctat aaattgggcc acagccatga tttcggtgcg ttcgtggaag tcttcactaa
     4321 tttcataacc catcgccacg tagggcacac taaatatcgt aagccctaaa taaaaaacta
     4381 aggaccaact caagaagtaa atgaaattgt acacaacacc atcgtcttta tacaattgcc
     4441 acatggcgac gtaggcaagg cccataatta tggctccaat aagcacatat tgccgtcttc
     4501 ggccccattt tgatttagta ttgtccgaaa taaatcccat gatggggtcg gtaatcgcat
     4561 caaaaattcg ggggacaaat tggatgattc cccaaagtag ggccgcaaag cccaggtctt
     4621 gaaccaaaac aatgataaac acccccaaag ctgcgggaaa catttgattg gcgagcatac
     4681 caaaaccaaa agcaatcttt tggcccatgg agacaccctt gttcggcatt gatttcacat
     4741 ctgtcatagt cgttagtctt ttgttagttg tttattaaaa tggtctgtat cgcttgaggc
     4801 ttgagcacca cgcgacacag ctggtcgttt ccttttatat tgattctttt aatgtcatta
     4861 gtcgggttaa agaccaccac gacataatga ttttcaccgc ctttaatggc cgtagccata
     4921 atatccttat cagtgcattg gtgttcaatg acgacaaatc ctggtcgaat gaatttgctg
     4981 aaatgacaca ttatataata caatggggta aaataaatgg catcttgatc ggggtcaacg
     5041 agcaccggag caatacacca attttcaaac caattgggcc cgccttgtcg gtctaaaacc
     5101 atgttccaat caatccatcc atctacccaa tgattaaggc acccaatgat atcacgcgca
     5161 tagcggtgca ccggagcgta tttggggtgt aaatattttt tttctggctc gcgccaagtg
     5221 taaccccaat ccgtggcttc ctctcgccaa taccaatcgt cttcacccca aaccggagtt
     5281 tgagcgtcac agcaagcctc ggtttgtatt aaaaatttat ctggcgcagc ctcatgggcg
     5341 cgctctaagg cctgcggaaa ataatccacg gtactttcat accagtgcac cgccgttccg
     5401 tcaaaatagc gtgcatgttc ctcattttga tacatcactg aaacccaatg atctaaacct
     5461 tc
//
LOCUS       DPUP01000249            3180 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_37506,
            whole genome shotgun sequence.
ACCESSION   DPUP01000249 DPUP01000000
VERSION     DPUP01000249.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3180)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3180)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3180
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..307
                     /locus_tag="DHV98_09665"
     CDS             <1..307
                     /locus_tag="DHV98_09665"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06590.1"
                     /translation="LNDSLWVRQDRLVEQIPPLKGKNIEALKNIKINQFQDSLGLYLL
                     KIEGVLNRNDVAPLSYVAPTIRQIILNRRKQELTLKLEKDITKDAIRNKTFEIYGQD"
     gene            264..1703
                     /locus_tag="DHV98_09670"
     CDS             264..1703
                     /locus_tag="DHV98_09670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010228703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HCK06591.1"
                     /translation="MRSEIKHLKFMAKIKVLCIGTLLMFGAVTAQEKIIDSTNVIQEP
                     VLVLQDSVMPEKTFTRFKAEGVSAVVGEYVVLDSDIDKSYLEMQQQGVSIKDITRCQL
                     LGKLMEDKLYAHHAKVDSLVVSDEEITGRIEQQIAYITDQFGGDEAKVAEFYKKSSIE
                     ELRQELFETNKVIYLAGQMQQKVVENVEVTPEEVRQFYFDIPEDQRPVFSAEVEVAQI
                     IIEPVITEKAKQDVIDKLNEFRRDIVENGSSFATKAVLYSKDGSASKGGLIPGIRKNS
                     PFAKEFKDVAFSLQEGDVSEPFETEFGYHIVTVDKVRGQEIDVRHIILFPEVTSASVA
                     RARTKIDSIRTEINQGRLSFADAAREFSDETETKNNGGQLINPVSLDTKFDLTKMDPT
                     LSAQVYNLKENEVSQVFSDRDYTGKTSFKILTVTSRQSEHAADFVAXLKEKQIKAIET
                     WQNKKIKDTYISVNGDYLDCEFASNWLKK"
     gene            1716..>1942
                     /locus_tag="DHV98_09675"
     CDS             1716..>1942
                     /locus_tag="DHV98_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014165039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCK06592.1"
                     /translation="MSDVALMDQLVQEYKSLKAEVQKVIVGQEKVVDEIICAIFSGGH
                     VLLVGVPGLAKTLMVQTVAKALGLSFNRIQFT"
     assembly_gap    1943..2096
                     /estimated_length=154
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2097..2726
                     /locus_tag="DHV98_09680"
     CDS             <2097..2726
                     /locus_tag="DHV98_09680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009780468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HCK06593.1"
                     /translation="LADEINRTPPKTQAALLEAMQERAVTIGGVRHELSQPYFVLATQ
                     NPIEQEGTYPLPEAQLDRFMFAINLTYPSLAEEIQIVKSTTADLEHTLEPTFDGPTLM
                     RYQKLIRRMPVADNVVDYAVKLVVKTRPESDNAPDLVKQYIDWGAGPRASQNLILAAK
                     THAALSGKYSPDIEDVKAVATPVLRHRLLKNYKAEAEGKSIDALIQALL"
     gene            2942..>3180
                     /locus_tag="DHV98_09685"
     CDS             2942..>3180
                     /locus_tag="DHV98_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006263118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HCK06594.1"
                     /translation="MAFDLSMIKALYERFPQRVKAARSAVGRPLTLSEKILYTHLWSG
                     TPETAFKRGEDYVDFAPDRIACQDATAQMALLQFM"
BASE COUNT          916 a          595 c          687 g          826 t
ORIGIN      
        1 cctaaacgac tccctttggg ttcgtcaaga cagacttgtc gagcaaattc cacccctgaa
       61 agggaaaaat attgaggcgt taaaaaatat aaaaattaac cagtttcaag actcattagg
      121 gttatattta ctgaaaattg aaggtgtgtt gaatcgcaat gacgtggccc cattatccta
      181 tgtggcccca acaattcgac aaatcatatt aaatcgacgg aagcaggagc ttaccttgaa
      241 attagagaaa gacatcacta aagatgcgat cagaaataaa acatttgaaa tttatggcca
      301 agattaaggt cctttgcata gggacgttat tgatgtttgg agcagtaact gcccaggaaa
      361 aaatcattga cagtaccaat gtaatacaag agcccgtttt ggtgctccaa gacagtgtaa
      421 tgcccgaaaa aacatttact cgattcaagg cagaaggggt ttcagccgtt gtgggagagt
      481 atgttgtttt agacagtgat atcgacaaaa gttacctaga aatgcagcaa caaggggtgt
      541 ctattaagga catcacccgc tgtcaactgc ttgggaaatt gatggaggat aaactttacg
      601 cccatcatgc aaaggtcgat agtttggttg tttctgatga agaaatcacc ggtcgtattg
      661 agcagcagat tgcctacatc acggatcaat tcggggggga tgaagccaaa gtggccgaat
      721 tttataaaaa gtcaagtatt gaggaattgc gtcaggagct ttttgaaacc aataaagtga
      781 tttacctcgc gggacagatg cagcagaaag tcgttgaaaa tgtggaagtg actcctgaag
      841 aagtgcgaca attttatttt gatatcccag aggatcagcg tccggtattc agtgccgagg
      901 tggaagtggc gcaaatcatt atagaacccg tcattaccga aaaagccaaa caggacgtta
      961 tcgataagct caacgaattc agacgagata ttgtcgaaaa tggttcaagc tttgccacaa
     1021 aagccgtttt atactccaaa gatggttcgg cgtctaaagg tgggttaatc ccgggaatta
     1081 gaaaaaattc gccttttgca aaagaattta aagacgttgc cttttcgctc caagaagggg
     1141 atgtaagcga accttttgaa acagagtttg gctatcatat cgtaactgtg gataaagttc
     1201 gtggtcaaga aatagatgtt cgtcatataa ttttgtttcc tgaggtgact tcagcgtctg
     1261 tggcacgcgc tcgtacaaag attgattcga tcaggacaga aatcaaccaa ggacgtctat
     1321 cctttgctga tgcggcacgt gaattttctg acgaaaccga gacaaaaaat aatggaggac
     1381 agctcatcaa tccagtatcc ctggatacaa agtttgattt gactaaaatg gatccaacat
     1441 tgagtgctca agtttataat ctcaaggaaa atgaagtttc acaagtcttt agcgatcgcg
     1501 attatacggg caagacgtca tttaaaattt tgacggtgac cagtcgacag agcgagcacg
     1561 cggctgattt tgtggcggnn ctgaaagaaa agcaaattaa ggccatcgaa acctggcaaa
     1621 acaagaaaat aaaagacacc tatatcagtg tcaacggaga ttatctcgat tgtgaatttg
     1681 ccagtaactg gctcaaaaag taagacgaaa agatgatgtc cgatgtcgcc ttaatggacc
     1741 aattggttca agaatataaa agcctaaaag ccgaagttca gaaagtcatt gtgggtcaag
     1801 agaaggtggt cgatgaaatt atttgtgcca ttttttctgg tgggcacgtt ttgcttgtgg
     1861 gggtccctgg actagccaaa acacttatgg ttcagacggt tgccaaagct ttaggtttgt
     1921 cctttaatcg catacaattt acnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnttgg
     2101 ctgatgagat aaatcgtacc cctcctaaaa cacaagcggc cttgcttgaa gccatgcaag
     2161 aacgtgcggt aactatcggt ggcgtgcgcc atgaactgag ccaaccttat tttgttttag
     2221 cgacgcaaaa cccgattgag caagagggca cttatccatt gcctgaggcg cagttagatc
     2281 gttttatgtt tgccattaat ttaacctatc cctcactagc ggaggaaata caaatcgtga
     2341 agtcaacaac agcggatcta gagcacactc ttgagccgac ttttgatggc ccgaccttaa
     2401 tgcgttatca aaagctaatt cgtcgcatgc ccgtggccga taatgttgtc gattacgccg
     2461 tgaaattggt cgttaaaacg agacctgagt ccgataatgc tccggatctt gttaagcaat
     2521 atattgattg gggtgctggc cctcgcgcct ctcaaaactt gatcctcgca gccaagactc
     2581 atgcggccct ttccggaaaa tactctcctg atattgagga tgttaaggct gtagcaaccc
     2641 ctgtgctccg tcatcgttta ttgaaaaatt acaaggcaga agccgaaggc aaatctattg
     2701 atgctttaat acaggcttta ctttaagctt tacgggttct tcccttaatt tttagcgaaa
     2761 ctggcgcttg gctcttttta acaaattctc aattttgact ggtctaaatt gctaaaatgt
     2821 aaaattcact gttgtttatt gatggacttt tgaggatatg gtaatttgta tcttcactag
     2881 gggaaatgtt ttttaactct gcctttattt cgtaattttg cagaacttca aaacacgact
     2941 tatggcattt gatttatcta tgattaaagc actttatgag cgttttccac aacgcgttaa
     3001 agcagcgaga tcggcagtag gcagaccgct tacactttct gaaaaaattc tttacaccca
     3061 cctatggtcc gggactccag aaacggcatt caaacgaggt gaggattacg tagattttgc
     3121 tccggatcga atcgcatgtc aagacgcgac ggcacagatg gctcttttgc aatttatgca
//
LOCUS       DPUP01000250            4791 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_914,
            whole genome shotgun sequence.
ACCESSION   DPUP01000250 DPUP01000000
VERSION     DPUP01000250.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 4791)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 4791)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4791
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..936
                     /locus_tag="DHV98_09690"
     CDS             <1..936
                     /locus_tag="DHV98_09690"
                     /inference="COORDINATES: protein motif:HMM:PF00288.24"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HCK06595.1"
                     /translation="SYTPFSEQSKESQGIGRAPDHSNFEVFVEGSAKPEFAPKIATFF
                     NRIQAHMPWIRSFQWRIDTENTFPHGSGIASSASGFAALAGALMELENSWSLHPLTPE
                     LRAQKTSFLARLGSGSASRSVLGPLMYWGAHPALPASSDLYACVLEHEVHAVFKNYKD
                     TILLVDQGEKEVSSTLGHNLMHDHPFAHQRFEQAQANLNKLLAVLANGDTQEFCALVE
                     SEALSLHAMMMTSNPSYLLMKPNTLAIIEKIRLFRRTQNVPVCFTLDAGANVHLLYPA
                     DFTPQLMPWIKNDLSQHCQGGQFIEDQVGQGVKKV"
     gene            956..1891
                     /locus_tag="DHV98_09695"
     CDS             956..1891
                     /locus_tag="DHV98_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011711468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HCK06596.1"
                     /translation="MKGPLFYSKILLFGEYGIIKDSKGLSIPYNFYKGALIIPDVETP
                     ETKKSNTHLTAFCAYLAQIEQGDQPLTRFNLTQMTQDLSQGMYFDSSIPQGYGVGSSG
                     ALVAAIYDRYAIDKITVLENLTREKLLTLKAAFAQMESFFHGKSSGLDPLNSYLSLPI
                     LINSQEHIEPAGIPSQTNTGGAVFLLDSGMTGETAPMVQLFMEKMKHEGFRSMLKNEF
                     VTYTDCCVEDFLKGDVGSLFGNIKRLSKVVLDHFQPMIPIQFHELWQRGLETNAYYLK
                     LCGSGGGGYMLGFTQDLDQAKAVLKDYKLEVVYQF"
     gene            1910..2815
                     /locus_tag="DHV98_09700"
     CDS             1910..2815
                     /locus_tag="DHV98_09700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019668999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiA"
                     /protein_id="HCK06597.1"
                     /translation="MVSRPQKIILLKLLSLVSVVRGYAIALMIAAQLFTAAFILSPEA
                     PLSEVLLSGNLWWLILATALSIAGGYIINNFYDQEKDLINRPRRSKLDQMLRQQTKLS
                     GYFILNFASVLAASAVSFQAALFFSGFIFLMWYYSHRLKKIIFIGNLTSAILSVMPLF
                     ILVVYFKSFSSIIVVHACFLLLLLASRELLKDLENLTGDLVLGYKTIPVVYGVRWAKI
                     IGILLIALTFVPSMVLILYYDIHAMRYYFYMTMAILPYGALLLWRARERRDYLILHAL
                     LRLGIIVGVFSIVLLNPERLIYGWF"
     gene            2903..3769
                     /locus_tag="DHV98_09705"
     CDS             2903..3769
                     /locus_tag="DHV98_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008236937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HCK06598.1"
                     /translation="MVKKKSGSPKATSATRKPTGDRPVQKNRKPLGQGGQGGKGGRPT
                     FTKPQKVTEPKRDGTRLNKFIANSGVCSRREADTYIASGLVTVNNKVVNTMGYLVQAG
                     DEVKFDGRRLQQEPPTYVLLNKPKAVASTTSESKGLTVMDLIANATNARVAPVGRLGR
                     NATGLFLFTNDDRLMNKLHKKGLPRLFHVELNKNLKNEDLLKIREGQSVDGRTVIVEE
                     VSYVANAAKKEVGLRIKNMGSSIIRELFEHLGYQVVKVDCVALAHLTKKDLPRGRYRH
                     LNDDEISLFSML"
     assembly_gap    3964..4076
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            4226..>4791
                     /locus_tag="DHV98_09710"
     CDS             4226..>4791
                     /locus_tag="DHV98_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003440077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HCK06599.1"
                     /translation="MNTKYIDLIDQTYEFPQEEFKLDGDHLKFHDIDLMNLVETYGAP
                     LKFTYLPKISENIQRAKTWFARAIEKHDYKGTYNYSYCTKSSHFKHILVEALSNDIHI
                     ETSSAYDINIVENLKKEGKITKDTFVICNGFKREEYIENIGRLINSGHENCIPIIDNY
                     EELALLGDAIERDFKIGIRIASEEEPKF"
BASE COUNT         1306 a          988 c         1017 g         1367 t
ORIGIN      
        1 agctacactc cattttctga gcaatcaaag gagtcacaag gcataggtcg tgcgccggat
       61 cattcaaact ttgaagtttt tgtagaagga agcgctaagc cagaatttgc gccgaaaatt
      121 gctacttttt ttaatcgaat tcaggcgcat atgccatgga tcagatcgtt tcaatggcga
      181 atcgatacag aaaatacatt tccgcacggc agcggcatag ccagttccgc cagtggattt
      241 gctgccttag ccggggccct catggaatta gaaaattctt ggtccttgca ccccttaact
      301 cctgaattac gtgctcagaa gacttctttt ttagcgcgat taggcagtgg tagtgcgtcc
      361 cgctcagtac tcgggcctct gatgtattgg ggagcacacc ccgcgttgcc tgcatcaagc
      421 gatttatatg cttgcgtttt ggaacatgag gttcatgcgg tgttcaaaaa ttacaaagac
      481 accatccttt tggtcgatca aggagagaaa gaagtcagca gtaccctggg ccataattta
      541 atgcatgatc atccctttgc tcatcagcgt tttgaacagg cccaagccaa tctaaataag
      601 cttctcgccg ttctggccaa cggagacacc caagaatttt gtgccctagt cgagtccgag
      661 gccttgtcgc tccacgccat gatgatgacc tcaaatccct cttatttgct catgaagccc
      721 aatacccttg cgatcattga aaagattcgt ttattcagac gcacccagaa cgttcccgtt
      781 tgttttacgc ttgacgccgg agccaatgtg cacctgctgt accccgctga ttttacccca
      841 cagcttatgc cctggattaa aaatgatttg agccaacatt gtcaaggcgg tcaatttatt
      901 gaggatcaag ttggtcaggg cgttaaaaaa gtctaatttt accacaaaag atgccatgaa
      961 aggaccttta ttttactcga aaatattact ctttggagaa tacggcatca tcaaagattc
     1021 caaggggctt tccatcccgt ataattttta caaaggggcc ttgattattc cggatgttga
     1081 aactccagaa accaaaaagt ccaacacgca tttaaccgcg ttttgtgcct acttagcgca
     1141 gatagaacaa ggcgatcaac cattgacacg tttcaacctg actcaaatga ctcaagatct
     1201 ttcccaaggg atgtattttg actcaagtat tcctcagggt tatggtgtgg gcagcagcgg
     1261 agcgcttgtc gccgccattt acgatcgtta tgcgatcgac aaaataaccg ttttagaaaa
     1321 cctgacccgt gaaaaacttt tgaccttaaa agcggctttt gcccagatgg agtcattttt
     1381 ccacggaaaa tcctctggcc ttgatccact gaatagttat ttgagtttgc ccatcttgat
     1441 caactcccag gaacatattg aaccggcagg aatcccgtcg caaaccaata ctggaggggc
     1501 cgtatttttg ctcgacagcg gaatgacagg ggaaacggca cctatggtcc agttattcat
     1561 ggaaaaaatg aagcacgagg gatttcggag catgctgaaa aatgaatttg tcacctatac
     1621 tgattgctgt gtcgaggatt tcttaaaggg agatgttggg tcactctttg gcaatattaa
     1681 acgactctct aaagtcgttt tagatcactt tcagccgatg atcccgatac aatttcatga
     1741 gctctggcaa cgcggtttag aaaccaacgc atactactta aagctttgtg gctcaggcgg
     1801 cggaggctat atgcttggat ttacccaaga tttagatcaa gctaaagcgg tcttgaaaga
     1861 ttacaaactc gaggtagtct atcaatttta gccttaaaac atcgggctca tggtctcacg
     1921 ccctcaaaaa ataattttgc tcaaactact tagtctagtc tctgtagtac gtggttatgc
     1981 cattgcgctg atgatcgcag cgcagttatt caccgcagca tttattttgt ctcctgaagc
     2041 gcccctgagc gaggtattgt tatcgggaaa cttatggtgg cttattttgg ctacggcatt
     2101 atccatcgct ggaggctata tcatcaataa tttttacgat caagagaagg acttgatcaa
     2161 tcgtcctcga cgaagtaaac tcgatcaaat gttgcgtcag cagaccaaac tttcagggta
     2221 ttttatcctc aattttgctt ctgttctggc cgctagtgcg gtttcatttc aggcggctct
     2281 ttttttttct gggtttatat ttttgatgtg gtattattca caccgactca aaaaaatcat
     2341 ctttataggc aatttgacct cagcaatttt gtcggtcatg ccccttttta tcttggtggt
     2401 ttattttaaa tccttctctt cgattattgt ggttcatgct tgctttttgt tgcttctttt
     2461 ggcttcacgg gaattgctca aggaccttga aaatttaacc ggggatttag ttctcgggta
     2521 taaaaccatt cccgtggtgt atggagttcg ctgggctaaa attatcggga ttcttttgat
     2581 tgcactgacc ttcgtgcctt ctatggtctt gattttgtat tacgacattc acgccatgcg
     2641 ctattacttt tatatgacga tggctattct gccctatggg gccttattgt tgtggcgtgc
     2701 cagggagcgg cgggattact taatcttaca cgccttgcta aggttgggga tcattgtggg
     2761 ggtatttagt atcgttttac tcaatcccga acgactcatt tacggttggt tttaaatcgc
     2821 tgcaaaaaga agtcgctcaa gtcaaaggaa gagacatttt ttattgtcta tctttgtgcc
     2881 ctaaattcaa ttcacccatc taatggttaa gaaaaaaagt ggttcgccca aggcgacatc
     2941 ggccacccgt aaacctacag gagatcgtcc tgttcaaaaa aacaggaagc cacttggtca
     3001 aggggggcaa gggggtaaag ggggacggcc tacttttaca aaacctcaaa aagtgactga
     3061 acctaagcgt gatgggacac gcctgaataa gtttatcgcc aatagcgggg tttgttctcg
     3121 tcgtgaggcc gatacttata ttgcttcagg cttagtgact gtgaataata aagtggtcaa
     3181 tactatgggc tacctggtac aagcaggcga cgaggtcaaa tttgatggcc gtcgattgca
     3241 gcaagagcct ccgacctatg ttttactcaa taaaccaaag gcagtggctt cgaccacaag
     3301 tgagtccaag gggttaaccg taatggattt gattgccaat gcgacaaatg cccgagtagc
     3361 cccagtagga cgattaggcc gcaatgcgac gggattgttt ttatttacca atgatgatcg
     3421 cctcatgaat aagttacaca aaaagggttt gccgagactc tttcatgtgg agctcaataa
     3481 aaatctaaaa aatgaggact tactcaagat aagagaaggt caaagtgtcg atggccgcac
     3541 agtaattgtt gaggaagtga gttatgtcgc taacgccgcg aaaaaagagg tgggattgcg
     3601 aattaagaac atgggcagta gcattattag agagctgttc gagcacttgg gctaccaagt
     3661 ggttaaagtc gattgtgtcg ccttggccca cctgaccaaa aaagatcttc cgagagggcg
     3721 ttatcgtcat ctaaacgatg atgaaataag cttattttca atgctttaaa atagaattag
     3781 agcagtttat tttttttaaa cattttgctt gtttttcaaa aaataaatta catttgccct
     3841 gtttcttagc tgaacgagtg aaccaagttt ctaccttcgg gtttttgaaa aaaaggaagt
     3901 catattcaaa aactgcttac caggtaagcg accgaaattt aaagctagct tccgtttttt
     3961 tgannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncttc
     4081 cgtttttttg attccgcgca ccgctcatct tttacgcaaa aagatctggg ctttgttgcc
     4141 aataattgta tgagttactt catattttac tcttaatcac aattattatt aacaccgctt
     4201 attttcggta aggcaacaaa aataaatgaa cacaaaatac attgatctca tcgatcagac
     4261 ttacgagttt cctcaagaag aattcaaact tgatggagac catctaaaat ttcacgatat
     4321 tgatttaatg aatttggttg aaacctatgg cgcgccgcta aagttcacct atctgccaaa
     4381 aatttcagaa aatatccaaa gggctaagac ttggtttgcc cgtgcgattg aaaagcacga
     4441 ttataagggc acttacaatt atagttactg tacgaaaagt tctcatttta aacacatctt
     4501 agtcgaggcc ctgagcaacg atattcacat tgagacctca tcggcctacg atatcaatat
     4561 cgtagagaat ctcaagaaag agggtaaaat caccaaggac acctttgtga tttgtaatgg
     4621 attcaagcgt gaggaataca tcgagaacat aggacgtttg attaactccg gccatgagaa
     4681 ttgtatccca ataattgata attacgaaga actagcactt ttaggtgatg ccattgagcg
     4741 tgactttaag atcggtattc gtattgcctc agaagaagaa ccaaaatttg a
//
LOCUS       DPUP01000251           12352 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_9894,
            whole genome shotgun sequence.
ACCESSION   DPUP01000251 DPUP01000000
VERSION     DPUP01000251.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 12352)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 12352)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12352
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            <1..974
                     /locus_tag="DHV98_09715"
     CDS             <1..974
                     /locus_tag="DHV98_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007096992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HCK06600.1"
                     /translation="PTRRSSDLVDKFLMNRIEHATRNKIQKAAKDGHIYVNDQSVKSN
                     YKVKGNDVVRVLFTHPPHEFLLVPQEIPLDIVYEDDSVVVVNKPAGMVVHPGHGNYQD
                     TLINGLIFHFEHLPENQNNRPGLVHRIDKDTSGLLVVAKTEQAMTHLAQQFFDKSTQR
                     EYIAIVWGNVEEDRGTVQGHIGRHPKNRLQNTVFEGEDAELKGKHAVTHYEVIERLGY
                     VTLIRCILETGRTHQIRVHMKYIGHTLFNDERYGGNEILKGTHFTKYKQFVDNCFKIL
                     PRQALHAKTLGFVHPKTQELMHFDAPLPQDMVAAIDKWRNYAKSSQV"
     gene            1143..1901
                     /locus_tag="DHV98_09720"
     CDS             1143..1901
                     /locus_tag="DHV98_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007648482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HCK06601.1"
                     /translation="MKVLLSPAKSLDFETPVSVIQTSTAQFLEKAAQVNAVLRKKSPK
                     QLRALMGISEHLAVLNYERNQLWESHSAPGKNRPAVFAFNGEVYRGLNVSTLPESKHE
                     FMQNTLRILSGQYGLLRPLDEIMPYRLEMGTKLAIGKSKNLYEFWQSAVTSILNEELK
                     NNELIVNLASNEYAKCLDFKSIKNPLITPVFKEYRNGVYKVLAVYAKYARGLMARYIL
                     DHNVQKLDELTSFDLDGYQFSADLSDKEQLVFVR"
     assembly_gap    2052..2181
                     /estimated_length=130
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2182..>2409
                     /locus_tag="DHV98_09725"
     CDS             <2182..>2409
                     /locus_tag="DHV98_09725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06602.1"
                     /translation="KKIILTLFSVFVAAAFSVNAQTTLTGSTGAIPDNACPTLTSFTA
                     TMGESGLVGTDWEISNVTIDISHTWDGDLSI"
     assembly_gap    2410..2553
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2554..>5370
                     /locus_tag="DHV98_09730"
     CDS             <2554..>5370
                     /locus_tag="DHV98_09730"
                     /inference="COORDINATES: protein
                     motif:HMM:PF01483.18,HMM:PF02494.14"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06603.1"
                     /translation="WDGDLSINLVSPSGASLNLSQFNGGSLNNYTNTVFVDGAPSITT
                     GSAPFTGQFSPEGGTFADTFEGEDVNGTWSLAVCDDAGGDLGTVNSWSITFYNGTTTS
                     NGTTGAIPDNACPVLTNFSANATNPGTLGTEWVIDNVTLDISHTWDGDLSINLVSPSG
                     TTLNLSQFNGGSANNYTNTVFVDGAPSITTGSAPFTGQFSPEGGTFASTFDGETVSGD
                     WLLAVCDDAGGDLGTVNSWSITFLELVGEPPVIQCPADVVVSNDADQCGAIVNFADAV
                     AIDPDGDLDTVVQISGLPTGSEFPVGVNTVEFRATDLAGNSSTCSFTITVEDVQDPMI
                     ECLAEYTVELGTTGEYTLDPEELLASFSDNCGIVSYEIGGALIPETRELTTTFAAGNG
                     GAFGGAVYFDVNVIEDISLTGLYLHTNETGAFTADVYTIVGGNYSGNETNAGAWTLLG
                     TVSGTAQGLGTPSEGTFGSPIALSAGTNYAMAVVMDASHGHDYTNGNGSNQFFSNADV
                     EISLGSASNVPFTGSVFSPRIFNGGVIYEALISGGPQDNFLDCSDIGQVGISITAFDA
                     AGNSVSCNTLITVVDTTAPEIMCDGEPLAGDIVEDFEGSTLPDGWTNTAIVGTDLWTF
                     GSPVYVGALGQAFPTNAAVFDDDAAGPGTANTVELASPVYNLSGVTEATLSFDYAYNY
                     LSGDAFYVEVFDGTQWVEILRFEEDHPVTNTGDLDMLPYANDAFQVRFTYDDGGGWMW
                     GVGIDNFHLSYFAPSTVVQVILDSNGLANYDASDLLVDVVEGCDYTVTVEAAGVVSGD
                     LTTLFAGGNGGAVGGAVYFDVTAIEDVTLTALDLHTGETGAFTVEVYAIPDGTYIGNE
                     NNAGAWTLVATGSGDGQGAGTPSFATLDTAVSLTAGTTYGMALVLSADHGHDYTNGDG
                     TNQNYATAELSFSGGSATNVPFTGN"
     assembly_gap    5371..5431
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5432..>6204
                     /locus_tag="DHV98_09735"
     CDS             <5432..>6204
                     /locus_tag="DHV98_09735"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06604.1"
                     /translation="NVPFTGNVFNPRVFNGRFYYDYLGTTAVENFDFDCSYLGINDIE
                     VTVTDNSGNVSTCISQVEVIDVDDPILVCQDATVSLDENGMAEVLPEYFISSDSFDNC
                     GITITAVDVTDVTCADIGAPITVTVFVSDDSGNIASCQATMTVVDDMGPVLEGCPEDM
                     TVDPGAVDLFYEVPDYTVGVTATDNCSDPAGAVTQDPAVGTLLPDGVYTVTLSSTDDE
                     GNVGSCSFELTVESVLGVASNQLNAGVAIYPNPARNVMN"
     assembly_gap    6205..6280
                     /estimated_length=76
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6312..6512
                     /locus_tag="DHV98_09740"
     CDS             6312..6512
                     /locus_tag="DHV98_09740"
                     /inference="COORDINATES: protein motif:HMM:TIGR04183"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06605.1"
                     /translation="MNIGNSTDIQLERAVIYDLNGRMIQTIDLSDMSAEASVNVAHLA
                     SGVYMVQLQAQDGQAIKRLVKE"
     gene            complement(6593..7159)
                     /locus_tag="DHV98_09745"
     CDS             complement(6593..7159)
                     /locus_tag="DHV98_09745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001295436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HCK06606.1"
                     /translation="MNILVIDNQDSFVYNLVHYLEAYDHEITVKRPTGVSEININLFD
                     KVVLSPGPGLPHESGELLKAIELWHKSIPLLGVCLGHQALALFFGGRLKNLETVTHGV
                     STPINILNKHHEIFRGLPDKIDVARYHSWSVLAENLPEELECTAMDENHEIMALRHKI
                     YPIHGIQFHPESILTPLGRKIILNWLES"
     assembly_gap    7251..7333
                     /estimated_length=83
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(7379..7951)
                     /locus_tag="DHV98_09750"
     CDS             complement(7379..7951)
                     /locus_tag="DHV98_09750"
                     /inference="COORDINATES: protein motif:HMM:PF04264.11"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HCK06607.1"
                     /translation="MKKLFKSSSLILSTFLTLSLLASTPGEPKPVKSSSVSWTASKVT
                     RTHSGIITLGDSHLEMDGDRIVGGRIEVDMSTIVVTDLEGEYKAKLEGHLKSDDFFGV
                     AQNPTASLDITGSTPNDDGSQQVTGNITIKGETQPITFTMSIKGNYVTTALNIDRTKF
                     GIRYGSGSFFDDLGDKAINDMFEIRAKLEL"
     gene            complement(7980..8363)
                     /locus_tag="DHV98_09755"
     CDS             complement(7980..8363)
                     /locus_tag="DHV98_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008613389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HCK06608.1"
                     /translation="MYTSRFIEERSAPLYKQYGITSAHFNILRILRGQKGQPANLSTI
                     QERMIDRSSNTTRLIDKLIAKNWVTRRICPSNRRKIEVNITDLGREKLLEIDLGVEQT
                     LKEILSNLTTKEMGQLNILLDKVRA"
     gene            8561..8869
                     /locus_tag="DHV98_09760"
     CDS             8561..8869
                     /locus_tag="DHV98_09760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007649628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HCK06609.1"
                     /translation="MIDLNQTDWAIQSSEDSNGVIIDVRTDMEVEEGKIPGAIQYNIQ
                     YSSQFMAQIKSLDPEKNYYVYCRSGGRSVQACMLMNAVGIKNTYNLLDGISAWTGDLE
                     "
     gene            complement(8958..9357)
                     /gene="ssrA"
                     /locus_tag="DHV98_09765"
     tmRNA           complement(8958..9357)
                     /gene="ssrA"
                     /locus_tag="DHV98_09765"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            9458..>9597
                     /locus_tag="DHV98_09770"
     CDS             9458..>9597
                     /locus_tag="DHV98_09770"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HCK06610.1"
                     /translation="MSLTFALIKERKSPPDKRVVLTPEQGVLFKSQFPEARLVVESSD
                     IR"
     assembly_gap    9598..9776
                     /estimated_length=179
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <9777..10846
                     /locus_tag="DHV98_09775"
     CDS             <9777..10846
                     /locus_tag="DHV98_09775"
                     /inference="COORDINATES: protein motif:HMM:PF05222.13"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HCK06611.1"
                     /translation="DEQYRALGIEVLEDVSFADVFVGVKEVPIASLIEEKAYLFFSHT
                     IKKQPYNQGLLQAICTKKIALYDHETFVSDSGSRLIGFGRYAGIVGAYNGFRLFGQKM
                     KTFDLPKVEHLYDYNAVKEALQNVVLPENFKTLITGRGKVALGAKEIIDHLKINQVSP
                     SELLQEKQLGPSYAMLDLEDYNKHGEGKDFDRSEFYQFPERYAGNFDRFTQVIDMFVA
                     GHFYGSGAPIILTREALRDPRCRIKVVADVSCDIDGPVACTLRPSTIAEPFYGYHAQS
                     HTEVDFKEVNAVGVMAVDNLPCELPRDASHGFGEQFLAQIAPSFFDGDAGGILSRAQI
                     TDSMGRLTPRFQYLQNYVLGH"
     gene            complement(10877..11707)
                     /locus_tag="DHV98_09780"
     CDS             complement(10877..11707)
                     /locus_tag="DHV98_09780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015023089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HCK06612.1"
                     /translation="MDLTKIPKLKHTQSDNFFLLAGPCAIEGYDMAMRIAESIVAISE
                     ELSIPFIFKGSFKKANRSRLDSFTGIGDHEALSILKAVGQQFDLPTVTDIHQESDAAM
                     AAEYVDVLQIPAFLVRQTDLLVAAAQTGKVVNLKKGQFMSPESMHHAVTKVQESGNAQ
                     VMITDRGTMFGYQDLVVDFRGIPTMKSYAPTVLDVTHSLQQPNQSAGVTGGRPEMIET
                     IARAGIATGVDGLFIETHFNPAEAKSDGANMLDLKNLAGLMRRLVALRQTVNKFTDLT
                     "
     assembly_gap    11760..11903
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            11988..12320
                     /locus_tag="DHV98_09785"
                     /pseudo
     CDS             11988..12320
                     /locus_tag="DHV98_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019038238.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing stop; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
BASE COUNT         3192 a         2207 c         2613 g         3523 t
ORIGIN      
        1 tccctacacg acgctcttcc gatctggttg ataaatttct tatgaatcgc attgaacacg
       61 cgacccgtaa caaaattcaa aaggcggcaa aggatggcca tatctatgtg aatgaccagt
      121 cggtcaagtc caactacaag gtaaagggaa atgatgtggt ccgtgtgtta ttcacccatc
      181 caccccatga atttctgtta gtccctcagg aaattcccct agacattgtt tacgaggatg
      241 actctgtcgt tgtcgtaaat aagccagcag gaatggtggt acacccagga catggcaatt
      301 accaagacac tttgatcaac ggattaattt ttcactttga acacttgcct gaaaatcaaa
      361 ataacagacc gggactggtc catcgaattg ataaggacac aagcggtctt ttggtggtcg
      421 ccaagacgga acaggctatg acccatcttg cacagcaatt ttttgacaaa tctacccaaa
      481 gagagtacat cgcaatagtc tggggtaatg ttgaagaaga tcgaggaacg gtgcaagggc
      541 atatcgggcg ccacccaaaa aatagactgc aaaatacggt ctttgagggg gaggatgccg
      601 agttgaaggg aaagcatgcc gtgacgcatt atgaggtcat tgaacgcttg ggctatgtca
      661 cactgattcg ttgtattttg gaaaccggcc gcacacatca aatccgtgta cacatgaagt
      721 atattgggca tactttattt aatgatgagc gctatggcgg aaatgagatc cttaaaggga
      781 cccactttac taaatacaag caatttgtcg acaattgttt taagatcctg cccagacagg
      841 ccttacatgc caagacctta ggttttgtcc acccaaaaac tcaagaatta atgcattttg
      901 atgcgccgct ccctcaggac atggtggcag caattgacaa atggcgcaat tacgctaagt
      961 caagtcaggt ctaatattca agtcaaaaag ctgcatattt tgatcataat gtgctcattc
     1021 gacaagggct taaaatctat gaaaactatg ccctgttgaa ttataaagga ttgttattca
     1081 ctaataattc tttataatta atgtttggta ttggtgcgat taaattttag tagtttagac
     1141 aaatgaaagt attactatct cctgcaaaga gtttagattt tgaaacgcct gtgtctgtga
     1201 ttcagaccag taccgcacaa tttttggaga aagccgcaca agtgaatgcg gtattgcgta
     1261 aaaaaagccc caagcaatta agagcgctga tgggcatttc ggaacatctg gcggtattga
     1321 attacgagcg caatcaactc tgggagagtc actcagcgcc aggaaaaaat cgtccggcgg
     1381 tttttgcgtt taatggtgag gtttatcgag gcttgaatgt ttcaacttta ccagaatcta
     1441 aacatgaatt tatgcagaat acgttgagaa ttctttcggg tcaatacggt ttgcttcggc
     1501 ctttggatga aatcatgcct tatcgactag agatgggaac taagttagcc attgggaaat
     1561 caaaaaacct ctatgaattt tggcagtctg cggtgacatc tatcttaaac gaagagctta
     1621 aaaacaatga gttaatcgtc aatttggcga gtaacgaata cgcgaagtgt ttggatttta
     1681 aatcgatcaa gaacccttta attactccgg ttttcaagga gtatagaaac ggagtttata
     1741 aagtccttgc tgtgtatgcg aaatatgcgc gcggtttaat ggcacgatac attctcgatc
     1801 acaatgtaca gaagctggat gaattaacat cattcgactt agatggttat caattttctg
     1861 ccgatttatc cgataaagag cagcttgttt ttgttcgata aggggtattt tttatcgata
     1921 aaataaatga atttctaaat gcgctctttt ttagcgcatt ttttatgctg gactgtttta
     1981 ttcttttgga ttttttatat ctttaatggc taataactaa tcttatttac acatgaaaaa
     2041 aattatttta annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn ngaaaaaaat tattttaaca ctttttagcg tatttgttgc
     2221 tgcggccttt agtgtcaatg cgcagaccac gttaacagga tccaccggtg cgattccgga
     2281 taatgcctgt cctaccttga ctagctttac ggcaaccatg ggcgaatctg gtctcgtagg
     2341 caccgattgg gaaatctcca atgtgaccat tgatatttct catacctggg atggagattt
     2401 atccattaan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntgggatg gagatttatc cattaatttg
     2581 gttagtccat ctggtgcttc attgaattta tctcagttta atggaggttc tttaaataat
     2641 tacaccaata ctgtatttgt tgatggagcg ccttcaatta ctactggatc tgcaccgttt
     2701 acaggacaat tctctccaga aggcggaaca tttgcagata cttttgaagg ggaagatgtt
     2761 aatggtacat ggtctcttgc tgtatgcgat gatgccggtg gggatttagg tactgtaaac
     2821 tcatggagta ttacgttcta taacggaacg actacgtcaa atggtactac cggcgctatt
     2881 cctgataatg catgccctgt attgactaat tttagtgcta atgcaacaaa tcctggtaca
     2941 ttgggtaccg agtgggtaat tgataatgtt actcttgaca tttctcatac ttgggatgga
     3001 gatttatcca ttaatttggt tagtccatct gggacaactt tgaatttatc tcagttcaat
     3061 ggaggttccg cgaataatta cacaaatact gtttttgttg acggagcgcc ttcaattact
     3121 actggatctg caccgtttac agggcaattc tctccagagg gagggacttt cgcgtccact
     3181 tttgatggtg aaactgtttc tggtgattgg ttactcgcgg tttgcgatga tgccggtggg
     3241 gatttaggta ctgtaaactc atggagcatt acgttccttg agcttgttgg tgagccacca
     3301 gtaattcagt gtcctgctga tgtagttgtg tctaacgatg ctgatcagtg tggtgctatt
     3361 gtgaattttg ctgatgctgt agccattgat cctgacggag atttggacac cgtagttcag
     3421 attagtggac tgcctacagg ttctgaattc cctgtgggag tcaatactgt tgaatttaga
     3481 gctaccgatt tagccggtaa ttcttcaact tgttccttca cgattaccgt tgaagatgtt
     3541 caagatccta tgattgaatg tcttgctgag tataccgttg aattgggtac tacaggagaa
     3601 tatactttag acccagaaga attattagca agcttcagtg acaactgtgg tattgtaagt
     3661 tacgaaattg gcggagcctt gattcctgaa acacgtgaat taacaacaac atttgctgca
     3721 ggaaacggtg gcgcatttgg tggcgctgta tattttgatg taaatgttat cgaggatatt
     3781 tctttaaccg gtctctacct gcacaccaat gagacaggcg catttacggc ggacgtctat
     3841 acaatagttg gtggaaacta ttctggaaat gaaacaaatg caggtgcatg gacattatta
     3901 ggtacagttt caggtactgc gcaagggtta ggtacaccat cggaaggtac ttttggaagt
     3961 cctatcgcct tatctgcagg gactaattat gctatggctg tggttatgga tgcctctcac
     4021 ggacatgact atacgaatgg aaatggttct aatcaatttt tctctaatgc agatgttgag
     4081 atttctttag gctctgcatc aaacgtacct tttacgggca gtgttttcag tcctcgtatt
     4141 ttcaatggag gagttattta tgaagcactg atttcgggtg gtcctcaaga taatttcctc
     4201 gattgttctg atataggaca agtgggaatt tcgattacag cttttgatgc ggctggtaat
     4261 agtgtttctt gtaatacttt gatcactgta gtagatacta ctgctcctga aatcatgtgt
     4321 gatggggagc cacttgcagg agatatcgtt gaagactttg aaggatctac attgcctgat
     4381 ggttggacga atactgctat agtcggtact gacctatgga cttttggaag tccagtctat
     4441 gttggtgctt taggtcaagc cttccctacc aatgccgctg tatttgacga tgatgctgct
     4501 ggtcctggaa ctgcgaatac tgttgaattg gcttcaccgg tatataatct ttcaggagtg
     4561 acagaagcaa ccttgtcctt tgattatgca tacaactact taagtggtga tgccttctat
     4621 gtagaagtat ttgatggtac tcagtgggtt gaaattctaa gattcgaaga agatcatcct
     4681 gtgaccaata cgggcgattt agacatgtta ccctatgcta acgatgcatt ccaagttcga
     4741 ttcacctatg atgatggtgg cggatggatg tggggcgtcg gtatcgacaa tttccactta
     4801 tcatattttg caccgagtac tgtggttcaa gttattttag attcaaatgg ccttgccaac
     4861 tatgatgcaa gtgacttact tgtagatgtt gttgaaggat gtgattatac tgtaactgtt
     4921 gaagctgctg gagttgtttc aggtgacttg acgaccttgt tcgcaggggg taatggtggt
     4981 gctgttggag gagcggtata ttttgatgta accgctatcg aggatgtaac cctaacggcc
     5041 ttagatcttc atactggcga aactggtgca tttactgttg aagtttatgc gattcctgat
     5101 ggaacttata tcggtaacga gaataatgcc ggtgcatgga ctctagttgc tacgggtagt
     5161 ggtgatggac agggcgccgg aacaccatct ttcgcgacct tggatacagc ggtttcctta
     5221 accgctggaa ctacttatgg tatggctcta gtcttaagtg cagatcatgg ccatgattac
     5281 actaatggtg atggaaccaa tcaaaactat gcgactgccg aactttcttt ctcaggagga
     5341 tctgcaacga acgttccttt cacaggtaac nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nggaacgttc ctttcacagg taacgtattt
     5461 aaccctcgtg ttttcaatgg acgtttctat tatgattatt taggaacaac tgctgtagag
     5521 aactttgatt ttgattgttc ttaccttggg atcaatgata tagaagtaac ggtaacggat
     5581 aacagtggaa atgtctctac ttgtattagc caggttgagg taatcgatgt tgatgatcca
     5641 atccttgttt gtcaggatgc tactgtaagt ctagatgaga atggaatggc tgaagttctt
     5701 ccagaatact tcatcagctc agattcattt gacaactgtg gaattacaat cactgcagta
     5761 gatgtaactg atgtgacttg tgctgatatt ggtgcaccaa tcacagtaac tgtattcgtg
     5821 agtgatgaca gtggtaatat tgcctcttgt caagccacaa tgacggttgt tgacgatatg
     5881 ggaccagttt tagaaggatg tccagaagac atgactgtag atccaggagc tgtagattta
     5941 ttctacgaag tacctgatta taccgtaggt gtaacggcta cagacaactg ttctgatcca
     6001 gctggtgcag ttacacaaga tcctgcagta ggaacgctat tgcctgacgg tgtgtacacg
     6061 gtgactttat cttcaactga tgatgagggt aatgttggaa gctgcagctt tgagcttact
     6121 gtagaaagtg tattgggtgt tgcgagcaac caattgaatg ctggtgtagc aatctacccg
     6181 aaccctgcac gtaatgtaat gaacnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn agcaatctat ccgaaccctg
     6301 cacgtaatgt aatgaacatt ggcaacagta cagatattca attagagcgt gctgtaatct
     6361 atgatcttaa tggtcgtatg attcagacaa ttgacttaag tgatatgtct gctgaggcaa
     6421 gtgtaaatgt ggcgcattta gcttctggag tgtacatggt acaacttcaa gcacaagatg
     6481 gtcaagccat caagcgctta gtaaaagaat aaataagatt agatatattc tttagagaaa
     6541 agcccgctca tttgagcggg ctttttttat gccgaaaaaa atagacgata atttaagact
     6601 caagccagtt gagaataatt ttgcgcccaa ggggagtcaa aatactttct ggatgaaatt
     6661 gaattccgtg aattggatat attttgtggc gtaacgccat gatttcatga ttctcgtcca
     6721 tcgctgtaca ttctaattct tcaggtaaat tctcagcgag aacactccaa gaatgatacc
     6781 gggccacatc gattttatcg gggagacctc ggaatatttc atggtgtttg tttaaaatat
     6841 tgatcggtgt cgataccccg tgtgtaactg tttctaaatt ttttaaacgt ccaccaaaga
     6901 acagggctaa ggcttgatgt cccagacata cgcctaatag gggtatagat ttatgccaaa
     6961 gctcaattgc cttgagtaac tctcccgatt catggggtaa ccctggtcct ggtgaaagaa
     7021 caaccttgtc aaatagattg atgtttattt ccgaaacgcc agtaggtctt ttgactgtaa
     7081 tttcgtggtc atatgcttct aaatagtgaa ctagattgta gacaaaacta tcctgattat
     7141 ctattacaag tatgttcata ggtatgagag ggccattgca atacgaatgt acgaattagc
     7201 tcatttcttg gtcggaagaa atcaataaaa aaacccgctc taggcgggct nnnnnnnnnn
     7261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7321 nnnnnnnnnn nnncccgcca taggcgggct ttattaggta ataaataggt tcgaattctt
     7381 acaattctag ttttgcacga atttcaaaca tatcatttat cgctttatct cctaaatcgt
     7441 cgaaaaaact gccagaaccg taacgaatac caaattttgt gcgatcaatg tttaaggccg
     7501 ttgtaacata gtttccttta atagacatgg tgaacgtaat tggctgagtt tcgcctttaa
     7561 tggtaatgtt tcctgtgact tgttggctgc catcatcgtt aggcgttgaa ccagtgatgt
     7621 caagacttgc ggttggattt tgagctacgc caaaaaagtc gtctgatttc aagtggcctt
     7681 caagcttagc cttatattct ccttctaggt ctgtcacaac aatagtactc atgtctacct
     7741 cgatacgacc acctacgatg cggtctccat ccatttctag gtggctgtct cctagtgtaa
     7801 taattcctga gtgcgttctt gtgactttac tcgcggtcca actgacggag cttgatttca
     7861 ctggtttagg ctcacccggt gtagaagcca acaggcttaa ggtcagaaag gtgctcaaaa
     7921 tgagcgatga agatttaaat aactttttca tagtttttta gagtttatgg tgttaaaaat
     7981 tatgctctaa ctttatcgag aaggatgttg agctgaccca tttcttttgt ggttaaatta
     8041 gataaaattt cttttaaggt ttgttctacc cctaaatcta tttctaataa tttttcacgg
     8101 cccaaatcgg ttatattaac ttcgattttg cgtctatttg aggggcaaat tcttcgagta
     8161 acccaatttt tagcgataag tttgtcaatg agcctggtcg tattgctgct gcgatcaatc
     8221 atgcgctctt gaatcgttga caaattagcg ggctgtccct tttggccccg taaaattctc
     8281 agaatgttga aatgtgctga ggtgatgcca tactgtttgt ataagggtgc gctgcgttct
     8341 tcaataaaac gtgatgtata catgacattg accactgtgc gggcgacagg ggaaagagga
     8401 gtggagttct tgatgctttt ttctatactc actgttgttt ctacaatatt tgtaggtaca
     8461 aatgtaatga taatttttgt tcggaatgcg cttttttcgt aaaaaaaata aatcacaagg
     8521 aattgatttt gattaaattt agcgcttaat tcagagattc atgattgatt taaaccaaac
     8581 cgattgggca atacagtcct cagaagacag taatggcgtg atcatcgacg tgcgcacgga
     8641 tatggaggtt gaggaaggca agattcccgg tgcgattcag tataatattc agtacagcag
     8701 ccaatttatg gctcaaatta aatcgttgga tcctgaaaag aactactatg tttattgtcg
     8761 ttctggtggg cgtagtgttc aggcatgcat gctaatgaat gcggttggca taaagaacac
     8821 gtataatcta cttgatggaa tctccgcctg gacaggagat ttggaataaa cttagttttt
     8881 ttatcactta agtgataaaa aaaacactga aaatcgcgtt gtataagccg catttattct
     8941 cagtgttttt gatttaaaag tggagccggg gagagtcgaa ctcccgtcca aacgtgccgt
     9001 tgcctggctt tctacatgct tagttttcat taggtttttc gttcaattgc tggctgaaaa
     9061 cggcctgctc aagacttatc ttcgatcaga tttcgcaaag tcatcaaagc cctgactaag
     9121 ctaggtttac ttttacgaag ccactttatc gattgccgca aaccaaggcc ttcgggtgac
     9181 ttcctgcttg cccgccttgc gggccgaggc atatcctact ctaattcaga ttatgcagct
     9241 agggcgtagt tattctcgcc gtttaaaaaa gtatgaaaca tgagatttac gagctatatc
     9301 ccagcgctcg acatgcttac caaccaatga aacccgctgt caaaaccagt cggccccatg
     9361 ttgaggttta aaaaaccata tggctatgga tttttaacct ggcaaagata cgtgaaaaag
     9421 ctatctttgt aacagcaatt tcaaccttaa ctaattcatg tcattgacct ttgcactgat
     9481 caaagagcgc aaatcgccgc ccgataaacg tgtcgtgctt actccggagc aaggcgtatt
     9541 gtttaaaagc caattcccgg aagctcgttt agtcgtagaa tcatcagata tcagaatnnn
     9601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnctga
     9781 tgagcaatac cgcgcactgg gaattgaagt tttagaggat gtttcttttg ccgatgtctt
     9841 tgtcggggtt aaagaagttc caatagcttc acttatagaa gaaaaagcct atttgttttt
     9901 cagtcatacc ataaaaaaac aaccctataa tcaaggtctt ttacaggcga tttgcacaaa
     9961 aaaaattgcc ttatacgacc atgagacctt tgtatcagac tcgggtagtc gcttaattgg
    10021 ttttgggcga tatgcaggga ttgtaggggc ctataatggc tttagacttt ttgggcaaaa
    10081 aatgaaaact tttgatttgc ccaaagtgga gcatttatac gattataatg cggttaagga
    10141 agctttgcaa aacgttgttt tacctgaaaa ttttaaaacc ctgatcaccg gtagaggaaa
    10201 ggtcgcctta ggcgctaagg aaattattga tcatttaaaa atcaatcaag tgtcaccttc
    10261 agaattgcta caggagaaac agctagggcc aagttatgct atgttggatc tagaggatta
    10321 caacaagcat ggggaaggca aggattttga tcggtctgaa ttttaccagt ttcctgagcg
    10381 atatgccggt aattttgatc ggtttactca ggttattgat atgtttgttg cgggacactt
    10441 ttatggtagt ggggcgccta tcattttgac acgggaggcc cttcgagatc ctcgatgtcg
    10501 tattaaagtc gttgctgatg tctcttgcga tattgacggg cctgtagcct gtaccctgag
    10561 accatcgacc atagcagagc ctttttatgg ttatcatgcg caatcacata ctgaagtaga
    10621 ttttaaggag gtaaatgctg ttggtgtaat ggccgtagat aacttaccct gtgaattgcc
    10681 aagagatgcc agtcacggat ttggcgagca atttttagcg caaatcgcgc cttcattttt
    10741 tgatggcgat gctggaggga tcttatctag agcccaaatc acggacagta tggggcgtct
    10801 aacaccacga tttcaatatt tacaaaacta cgtattgggg cactgagtgc tgaataaaat
    10861 cgtcctgtcg taccaatcac gttagatccg tgaatttgtt cacggtttga cgaagagcca
    10921 ctaatctgcg catgaggcct gctaaatttt ttaaatcaag catattggcg ccgtcgcttt
    10981 tggcttctgc gggattaaag tgcgtttcaa taaataagcc gtcaacacct gtggcgatgc
    11041 ctgcacgggc aatggtttca atcatttcgg gtcggccacc agtaacgcca gcgctttgat
    11101 tgggttgttg aaggctatgg gtgacatcca gcacggtggg cgcataggat ttcatcgtgg
    11161 gtatccctcg aaaatcaacc actaaatcct gataaccaaa catagttccg cggtctgtaa
    11221 tcataacctg tgcgttcccc gattcttgaa ctttagtcac ggcatgatgc atgctttcag
    11281 gactcatgaa ttgtcctttt tttaaattaa ccaccttgcc ggtttgcgcc gcagcaacaa
    11341 gaagatcggt ttggcgtacc aaaaaggcag ggatctgtaa cacatcaaca tattcagcag
    11401 ccattgcggc atcactttct tgatgaatgt ccgtaactgt aggaaggtcg aattgttggc
    11461 ctactgcttt gaggatactc aaagcttcgt gatcacctat cccagtaaaa ctgtctaagc
    11521 ggcttctatt ggccttttta aaacttccct taaagataaa ggggatggat aattcttcac
    11581 tgatcgcaac aatagactca gcaatgcgca tggccatatc ataaccttca atggcacaag
    11641 ggcccgctaa caagaaaaag ttgtcgcttt gggtatgttt taatttagga atcttggtca
    11701 agtccatagt aaaattttta cgccgtaaag atacattaaa tataccgcca cctgaagcgn
    11761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    11881 nnnnnnnnnn nnnnnnnnnn nnntctaagc tgggcgtaaa ataaaatagc ttctcaatac
    11941 tttattggct aaataacagt acttttgcgc cgcttttaac ccaggatatg aatattaaaa
    12001 atatcgccat cattgcgcac gttgaccatg gtaagactac tttggttgac aaaattttac
    12061 accattgtag tctatttcaa gcccatgaaa aaactgggga attgatttta gataataacg
    12121 atttggagcg tgaacgcgga atcaccatca cgtctaaaaa cgtttcggtg gtctataagg
    12181 atactaaaat taatattatt gacactcctg gtcacgccga ctttggtgga gaggtggaac
    12241 gcgtactcaa tatggccgat ggcgttttac ttcttgtcga tgcctttgaa ggccccatgc
    12301 cagatcggaa gagcgtcgtg tagggaaaga gtgtagatct cggtggtcgc cg
//
LOCUS       DPUP01000252            3447 bp    DNA     linear   ENV 10-SEP-2018
DEFINITION  TPA_asm: Flavobacteriaceae bacterium isolate UBA9061 contig_23988,
            whole genome shotgun sequence.
ACCESSION   DPUP01000252 DPUP01000000
VERSION     DPUP01000252.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020139
            Sequence Read Archive: SRR6486004
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Flavobacteriaceae bacterium (marine metagenome)
  ORGANISM  Flavobacteriaceae bacterium
            Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
            Flavobacteriaceae.
REFERENCE   1  (bases 1 to 3447)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 3447)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 7.62x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/08/2018 20:52:59
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,961
            CDS (total)                       :: 1,949
            Genes (coding)                    :: 1,822
            CDS (coding)                      :: 1,822
            Genes (RNA)                       :: 12
            tRNAs                             :: 10
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 127
            Pseudo Genes (ambiguous residues) :: 94 of 127
            Pseudo Genes (frameshifted)       :: 70 of 127
            Pseudo Genes (incomplete)         :: 15 of 127
            Pseudo Genes (internal stop)      :: 4 of 127
            Pseudo Genes (multiple problems)  :: 54 of 127
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3447
                     /organism="Flavobacteriaceae bacterium"
                     /mol_type="genomic DNA"
                     /isolate="UBA9061"
                     /isolation_source="marine"
                     /db_xref="taxon:1871037"
                     /environmental_sample
                     /note="metagenomic; derived from metagenome: marine
                     metagenome"
     gene            complement(<1..2291)
                     /locus_tag="DHV98_09790"
     CDS             complement(<1..2291)
                     /locus_tag="DHV98_09790"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HCK06613.1"
                     /translation="MSSSNDIASVLKKRGLNGVKHLPILLLFVTVSLAYFYPVLGGRA
                     LFQSDIAQYQGMARESIAYRNQTGKETYWNNSAFGGMPTYQLGAQYAYYGLKYVDRTL
                     RFLPRPADYLFLYFFGLYFLLISLKVPKAWAVFGALSFGFSTYLIIILGVGHNAKAHA
                     IAYFPWVIAAILWTLKGRYKSGFILSTLAIGLQLMANHYQMTYYLLMAVVLLWVIMGI
                     DALKQNKIIGFTRATGILMASGLFALGLNATNILATREYAKESTRGPAVVTIDPEGEI
                     LPQNEGLDYDYITEYSYAPLESFNLWIPRFMGGSSQEALPEDSEMVSALRTMGASRSE
                     AQEIAQQIPMYWGDQPIVAAPAYIGGVVITLAILALFIISGPLRTWILAVSVLALLLS
                     WGRNFQWLTNLFIDYVPLYDKFRAVSSIQVLIEFLMPVIAVLGGVSLMKQAQENPISL
                     MKKLQRAAITVIGSLLLLLGASYGFLEFSGPYDGYFMDQLGLDFVRAMRLDRASLMRY
                     DTVRTLILALFSFALLWSFLKHKISKNTVVLSLIVLSAIDLVSVDWRYVNADDFVQKR
                     LIERPFQASEVDLSIQRDTSYFRVFDQSSAPFNSARANFFHRQLGGYHAAKPRRMMDL
                     YEFYLEGSNDQVLDMFNVKYIITRNEGTTGSEASINSDRYGAAWFVDSIIEFSSANQE
                     LLAIGRYDLKKTALVHREQFEELPRWPKPIKPELETTLFNSDRIELVRHQPDRLVYRS
                     NAAQERVAIFSEAYYPHGWQVTI"
     gene            complement(2399..2674)
                     /locus_tag="DHV98_09795"
     CDS             complement(2399..2674)
                     /locus_tag="DHV98_09795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002985005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4834 domain-containing protein"
                     /protein_id="HCK06614.1"
                     /translation="MFEFLKTVLIILWIYYAIKLMMRWLFPKILPWMMKQIFKKALGS
                     NQSFGSQDASSFDSFSTKEPGTKTNKSSTPRSKKVVGEYIDFEEIEE"
     gene            2768..>2971
                     /locus_tag="DHV98_09800"
     CDS             2768..>2971
                     /locus_tag="DHV98_09800"
                     /inference="COORDINATES: protein motif:HMM:PF13557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK06615.1"
                     /translation="MIAMKNYWTILFLLFQGLVFGQYTDMLNSNRPGGSQGAFSVGTG
                     VLQFESGMSFGNEQHSLRYTETGI"
     assembly_gap    2972..3043
                     /estimated_length=72
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            3092..>3447
                     /locus_tag="DHV98_09805"
     CDS             3092..>3447
                     /locus_tag="DHV98_09805"
                     /inference="COORDINATES: protein motif:HMM:PF13557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HCK06616.1"
                     /translation="MGDFQRNSITYTQGAIAPETLSNFKNNTIGAKYLIYDPYIKQEQ
                     NGPNLYSWRQNNRFQWRDFIPAVALYAGANFDFDNNPLLPYNEATISPRLMLATQNNW
                     IGGFVFVTNIYADRFTT"
BASE COUNT         1058 a          757 c          656 g          904 t
ORIGIN      
        1 tcaatagtaa cttgccatcc atggggataa taggcttcag aaaatatggc cacacgctct
       61 tgggcagcat tcgagcgata aaccaaccga tctggttgat gcctcactaa ttcaatgcga
      121 tcactattaa ataaggtcgt ctctaactcc ggctttatcg gctttggcca acgaggtaat
      181 tcctcgaatt gttccctatg aacgagggcg gtctttttta gatcatacct accgatggct
      241 aaaagctctt ggttagccga actaaattcg attattgaat cgacaaacca agctgcacca
      301 tatcgatccg aattaatgct tgcctctgat cctgtagtgc cttcgttacg cgtaataatg
      361 tattttacat taaacatatc gagcacttga tcatttgacc cttccaaata gaactcatat
      421 aaatccatca tacgacgcgg ttttgctgcg tgatatcctc ctaattgtcg atgaaaaaaa
      481 ttggccctgg ccgaattaaa cggcgcagaa gactgatcaa aaacgcgaaa ataggaagtg
      541 tcccgttgga ttgataaatc cacctcactg gcttgaaaag gtcgctcaat caatctcttt
      601 tgaacaaaat catcagcatt cacataacgc caatccacgg aaaccagatc aatagcagag
      661 agcacaataa gacttaatac cactgtattt ttactgattt tatgtttcaa aaacgaccaa
      721 agaagagcaa aagagaaaag agcaagaatc agtgtccgca ctgtatcata gcgcattaat
      781 gatgcccggt ctaaacgcat ggctcggaca aaatccaagc cgagttgatc catgaaatat
      841 ccatcataag gcccagagaa ttccaagaaa ccataagacg ctcctagtaa caacagcagt
      901 gacccaatca cggtaatcgc tgcacgttgt aattttttca taagactgat cgggttttct
      961 tgagcctgct tcatcaatga aacgccccca agaaccgcga tcaccggcat taaaaattca
     1021 atcaacacct gaatggagga aacggctctg aatttgtcat aaagcggcac ataatcgata
     1081 aatagattcg tcaaccattg aaaattcctg ccccaagaca acaaaagggc cagtaccgat
     1141 accgccagaa tccaggttct taaagggcca ctgatgataa ataatgccaa tatagctaat
     1201 gtgatgacga caccgccgat ataagcagga gcggctacta tgggctgatc gccccaatac
     1261 atcggtattt gttgggcaat ttcttgagcc tctgatctac tggcacccat agtgcgaagc
     1321 gctgaaacca tctctgaatc ttcaggcagc gcttcttgac ttgagccccc cataaatcgt
     1381 gggatccata aattaaaact ctctaaaggc gcgtaactat attcagtaat ataatcgtag
     1441 tctaaacctt cattttgagg caaaatttct ccctctggat caatagtgac caccgcgggg
     1501 cctcgggtcg actcttttgc atattcacga gtggctaaaa tattagtggc gttaagccct
     1561 aaagcaaaaa gcccagaggc cataagaatc cctgtagctc tggtaaatcc aataatttta
     1621 ttttgtttta atgcatcgat ccccatgatc acccacaaaa gtaccacggc catcaaaaga
     1681 taataagtca tttgatagtg attggccatc agctgaagtc ctatcgccaa tgtacttaag
     1741 ataaacccac ttttataacg cccctttaac gtccataaaa tcgcagcgat gacccaagga
     1801 aaataagcaa tagcatgggc ctttgcatta tgacccactc ctaaaataat aattaagtaa
     1861 gtagaaaacc cgaaactcaa tgccccaaaa accgcccatg ccttgggtac ttttagagaa
     1921 atcagtaaaa agtaaaggcc aaaaaaatac aaaaataaat agtccgcagg tctgggtaaa
     1981 aaccgcaaag ttctatcgac atattttaga ccgtaatagg cgtattgagc gccgagttga
     2041 taggtcggca ttccgccgaa tgctgagtta ttccagtacg tttctttccc tgtttgattt
     2101 cgatacgcga tactctcacg cgccatcccc tgatattgtg caatatcact ttgaaatagt
     2161 gcacgaccgc ccagtacggg atagaaatag gccaatgaaa cagtgacaaa tagcagcaga
     2221 atgggcaagt gctttacccc gtttagcccc ctctttttaa gtactgaggc aatatcattt
     2281 gaagaactca tctcgtggtt tgaatttgtt cgaatttaag aaaaagaatg cagtatatcc
     2341 ccttgcccga ctttggatgt attatccttt cgggcgctca taacccttaa ccaactgatt
     2401 actcctctat ttcctcaaaa tcaatatact ccccgaccac ctttttagat cttggggtac
     2461 tggacttgtt tgtcttagtc ccaggttctt ttgtcgaaaa ggagtcaaac gaagaggcgt
     2521 cttgagaacc aaacgactga tttgaaccaa gggctttttt aaaaatttgt ttcatcatcc
     2581 atggcaaaat tttagggaac aaccagcgca tcatgagctt gatggcgtaa taaatccaca
     2641 ggataatgag tacggttttg aggaattcaa acatgaagta tactatgtaa caaaagtagg
     2701 gattacggct taaaagtagg ttttaagact attaaataaa tgataaaatc cgctatcttt
     2761 gagtcaaatg attgccatga aaaattactg gaccatactc tttctccttt tccagggcct
     2821 cgtatttggt caatacacag acatgctcaa ctcaaatcga ccaggtggct cgcaaggcgc
     2881 tttttcggtg ggcacaggcg tgttacagtt tgaatctggg atgagttttg gtaatgaaca
     2941 acacagtttg cggtatacgg aaacggggat annnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntatacca tacgttacgg
     3061 tttttggaag gaagccttag aaattagtct catgggagat tttcagcgaa attcaattac
     3121 atacacccaa ggggccatag ctcctgagac cctttcaaat tttaagaaca ataccatagg
     3181 ggctaaatat ttgatttatg atccatacat aaaacaagag cagaatgggc ccaatctcta
     3241 cagttggcgc caaaataatc gatttcaatg gcgagatttt attccagccg tagcccttta
     3301 cgccggggca aattttgatt ttgacaataa ccccttattg ccttataacg aggcaacaat
     3361 tagccctaga ctgatgttgg ccacccaaaa taattggatt ggtggatttg tctttgttac
     3421 caatatttat gcagatcgat ttactac
//
