LOCUS       DUKB01000001            3645 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_789, whole genome shotgun sequence.
ACCESSION   DUKB01000001 DUKB01000000
VERSION     DUKB01000001.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3645)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_789"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2831
                     /locus_tag="HA345_00005"
     CDS             <1..2831
                     /locus_tag="HA345_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83767.1"
                     /translation="SHPSLAGSYLAALVITATISGQTTVGSNDSVSLPAALKLELQQA
                     ADATVFNETSHLSYPWESGSGSGTSMGMARNTPSTGLDASSWAVQWTDPVVRNLSSGS
                     TTIIDLHVEVPQNAAPGAYGLRLYAASTFGNFSVSTVLVIDVNGTHLFESSFTSEQAW
                     LPGGSGNLTMTLTDVGTDGVSPSIAPGSISTVGACLVDSITSVDGASESTWSIGLDIL
                     SQSHVGDSCTISLDVHESESDATYPLAHTIVVNESLSLVVQVDSALTQGPVQLPSGAV
                     TLQTHLLTNNGTEDLNVSFSAPTMPEISFTSDTVHVPRGMTRPVHVEFDSVQSLSLHS
                     EWFVPVFSTDRLGTSITIDNAGNSNASVNVEYPYWTDISASAINGTLVSLDPGESTTL
                     SFEVQNLGTVANMVDFMTSTPPPGVTITPMIDAFSVAPGSTHALHVLFEADVDSSSID
                     TSLDFDFQHQDAADSTDDATGDTSATDRLSVSLIVNSRGKPLIASGVSEIPVVADLWT
                     TVELTLANGGNAQGVFEVSITQSPNGLQTELSQSIVTLGVGESTEIELRVKGSALGTI
                     VVAAASSTGPEYSSSASFEAISGSLAATLTVTPSSLVMDDEVESLSAIVFNPTDRALD
                     YRLEVTSDLECALQNTALNVPAASSLEVVIYCSAPADAIAGVHDVLVDVRPVDLPTEV
                     TSATSQITLPEAFGANGALLLDLVLLNDGGLIVQNGESLTMLLKVENVGNTNRSGILI
                     LTGDAINNGLLKTWNVVPIGSSIPAYNLAPGESVTMELALVSDGLSQGTYEVVLTASE
                     NGGAGEVSLAPLALFIEDEPVPPSGIALPFGAEMDNMTSIFVLMGGYVLAMLLLQILR
                     TSRRRSAEKVAAAEASADARIEAMNAEHESAPSVEEDPLEEGEVRPGDDGAASCPFCN
                     TRSKLPEGKTPPFRFRCPSCTEIVRVVE"
     gene            complement(2835..>3645)
                     /locus_tag="HA345_00010"
     CDS             complement(2835..>3645)
                     /locus_tag="HA345_00010"
                     /inference="COORDINATES: protein motif:HMM:NF020287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83768.1"
                     /translation="HPLMEPPKLVLLREANGKVFAVEMVDEERRIRGIGRINPETTLT
                     GLEVGDRIKIGTKIFTRIQPGLPELRVSMARRAQVITPKDAGFLIAWMGIGQDDRVLE
                     AGFGSGGLAMHIARVLGPSGHLISVERREDHAEVGEINLRRCQSTFSDFCSWSLIHGD
                     VADTTEQIRNIADGIDAAILDMPEPWHAIPSVGTLLRIGGRLACYCPSPDQLATSWSS
                     VEEAGLTVEWAGEMIERRWALTKRGGVRPSNTPIGHTAFLLIAVKAPDEEE"
BASE COUNT          789 a          934 c          893 g         1029 t
ORIGIN      
        1 ggagtcatcc atctcttgca ggttcgtatc tcgctgctct cgtaatcaca gcgacgatat
       61 cgggtcagac aactgttgga tccaacgact cggtatccct ccctgcggcg ctcaaacttg
      121 aactccagca ggcagcagat gccacggtat tcaacgagac ctcgcaccta tcctatcctt
      181 gggagtccgg ttctggaagt ggtacgtcta tgggcatggc ccgtaatact ccctcgacag
      241 gattagatgc ctcatcatgg gccgttcagt ggactgaccc cgttgttcgg aatctttcct
      301 ccggttcaac aaccatcatc gatcttcatg ttgaagttcc tcagaatgct gctcctggcg
      361 catacggtct gcgcctctac gctgcaagca ccttcggaaa tttctcagtg agcactgttc
      421 ttgtgattga tgttaatggc acacatctct ttgaatcgag ctttacgagt gaacaggctt
      481 ggttacctgg gggttctggt aatctcacaa tgactcttac agatgtaggt acagacggag
      541 tttctccctc cattgcccct ggttcaatct ctacggttgg ggcttgcctt gtcgattcaa
      601 taacttcagt tgatggtgca tccgagtcaa cttggtctat cggattagat attctctccc
      661 agagtcatgt tggtgattca tgcaccattt cattggacgt acatgaatct gaatctgatg
      721 ccacatatcc gttggcgcat acaattgtgg tcaacgaatc tctctctctg gtagtccaag
      781 ttgattcagc attgactcaa gggccggtac aactcccgag tggtgcagtg accttgcaga
      841 cgcatttgtt gacgaataat ggtactgagg atctcaacgt atccttctca gcaccgacta
      901 tgcctgaaat ttcgttcact tcagatactg ttcatgttcc acgtgggatg acacggcctg
      961 ttcatgtgga gtttgattca gttcagtcgc tgtcactcca ctctgagtgg tttgtaccag
     1021 tattctcaac cgatcgtctc ggtacttcga tcacgattga caatgctggt aacagtaatg
     1081 cttcagtgaa tgtggaatat ccttattgga ctgatatttc ggctagtgcc atcaatggta
     1141 ctttggtgtc tttggacccc ggagagtcga ccacgttatc gtttgaggtc cagaatctcg
     1201 gtaccgtggc gaatatggtt gatttcatga cgtctacccc gccacctggc gttacaatca
     1261 ctcccatgat tgacgcattc tctgtggcgc ccgggagtac tcatgccctt catgttctct
     1321 ttgaggctga tgttgattcc tcttcaatcg atacttctct tgacttcgat ttccaacatc
     1381 aagatgctgc ggactcaacc gatgacgcaa ctggagatac ttccgcaaca gatcgactta
     1441 gtgtatccct aatcgtcaat tcccgtggta agccactcat cgcatccggc gtttctgaga
     1501 tacctgtggt tgctgatctt tggacaaccg tcgaactcac tctcgccaat ggtggtaatg
     1561 ctcagggtgt gtttgaggtg tctatcactc agtcgcctaa cggcttgcag actgagttgt
     1621 cccagagtat tgtaacgctt ggagtaggtg aatcgacaga aattgaacta cgtgtgaagg
     1681 gttctgctct aggcactatt gtggtggcag cggcgtcatc tacagggcca gagtattcct
     1741 cctcggcttc ttttgaggca atctcagggt cacttgctgc cactctaact gtcactccat
     1801 cgtctttggt catggatgat gaggtcgaaa gcctctcagc tatcgtattc aatccgacag
     1861 atcgtgcttt ggattatcgt cttgaagtaa cctcggatct cgaatgcgct ctacaaaata
     1921 ctgcgcttaa tgttccagcg gcttcttcgt tggaggttgt gatctattgt tccgctccgg
     1981 cagacgctat cgcgggagtt cacgatgttc tcgtcgatgt ccgaccagta gatctgccta
     2041 ctgaagtcac ttcagcaaca agccaaatca ctctacccga ggcctttggg gcgaatggtg
     2101 cattgttgct cgacttagtt ctcctaaatg atggtggcct tattgtccag aatggtgaat
     2161 cattgaccat gcttctcaag gtggaaaatg ttggaaacac gaaccggagc ggaatcctga
     2221 tactcacggg tgacgccatt aacaatggtc tgttaaagac ctggaatgta gttccaattg
     2281 gttcgtcaat tcctgcatac aatctcgcac ctggggagag tgtcactatg gaactcgccc
     2341 tagttagcga tggtttgtct caaggtacgt acgaggttgt actaactgct tcagagaatg
     2401 gtggtgctgg tgaagtttcc ttggcaccat tagctctatt catcgaagat gaacccgtcc
     2461 ctccgtcggg tatcgctctt ccttttggtg ctgagatgga caatatgact agcatcttcg
     2521 tcctgatggg tggctatgtc cttgccatgc ttctgctaca aattctccgt acttcgcgcc
     2581 gccgttctgc agagaaggtt gccgctgctg aggccagtgc ggatgcccga atcgaagcaa
     2641 tgaatgctga acatgaaagt gcaccctctg tcgaggagga tcctctcgaa gagggtgaag
     2701 tccgaccagg agatgatggt gctgcatctt gcccgttctg taatacacgt tccaaacttc
     2761 cagaagggaa aacgcctcca ttccgtttcc gatgcccgtc gtgcacggaa atcgttcgtg
     2821 ttgttgagta gtattcactc ttcttcgtcg ggagccttaa cggcgattag aaggaaggca
     2881 gtgtgtccga tcggagtgtt acttggccgc acccctcctc gcttggtaag ggcccatcgt
     2941 ctctcgatca tttcgccagc ccattctacc gttagacccg cctcctcaac ggaactccat
     3001 gaggtggcta actgatcggg tgatggacaa tagcatgcaa gacgtcctcc gattcggagc
     3061 agagttccga cagatgggat tgcatgccat ggttccggca tatcgagaat cgctgcgtcg
     3121 attccatcag caatatttct gatttgttcg gtggtatctg caacatctcc atggataagt
     3181 gaccatgagc agaagtcact gaacgttgat tggcatcgtc gtagattgat ttctcccact
     3241 tctgcatgat cctctctgcg ttcgacagag atgagatgtc cgcttggccc gagaacacga
     3301 gcgatatgca ttgcgagacc ccctgatcca aaacctgctt ctaggactcg atcatcctgg
     3361 cctatgccca tccaagcgat gagaaatcca gcatcttttg gggtgataac ttgtgctcta
     3421 cgtgccatgg aaacacggag ttcaggtagc cctggttgaa ttcgggtgaa tatcttcgtt
     3481 ccaattttga tccgatcacc gacttccaat cctgtgagtg tggtctctgg attgatgcgc
     3541 ccaatgcctc gtatccgtcg ttcctcgtca accatctcga cggcaaacac cttcccattt
     3601 gcctcgcgga gaaggaccag tttagggggc tccatcaatg ggtgt
//
LOCUS       DUKB01000002            4536 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_40256, whole genome shotgun sequence.
ACCESSION   DUKB01000002 DUKB01000000
VERSION     DUKB01000002.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4536)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_40256"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(94..954)
                     /locus_tag="HA345_00015"
     CDS             complement(94..954)
                     /locus_tag="HA345_00015"
                     /inference="COORDINATES: protein motif:HMM:NF012596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83769.1"
                     /translation="MMTDALPDTELCSIEIEGAVARLTLTRPDVFNAMNIQMISEIIS
                     LLDWTGKRSVARMGNLIDSSGDSCIRVLIFSGNGRHFCAGADINMMRDAGAKSPEENR
                     IDSERLDRLFNTLWSHPCFTIGIVQGVALGGGAGLVACLDHVIVEPRTRIALSEGKLG
                     ILPAVIGPYVYRRVGSSQFRRLAMLAGRIDAEEALRIGMVDQAEDSPEAAHEAALGVI
                     EEVLTTGPMAVAEAKRLTLTFDRWVGTDEELRLWTLDKTSEMRGSDEGQEGLSSFLEK
                     RPANWKPESE"
     gene            complement(967..2577)
                     /locus_tag="HA345_00020"
     CDS             complement(967..2577)
                     /locus_tag="HA345_00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014244587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylcrotonoyl-CoA carboxylase"
                     /protein_id="HIH83770.1"
                     /translation="MDVLPTRVNRSDEVYSARVAHNEALISELRAEIDRVHLGGGEKY
                     VERHRSRGKALARERIEAICDPGTPFLETSPLAAHGLYDGRAVSAGVVTGIGVVHGRE
                     CMFVANDATVKGGSYYPLTVKKHIRAQEIADENYLPCIYLVDSGGAFLPMQDEVFPDK
                     GHFGRIFRNQAMMSGKGIPQIAAVCGSCTAGGAYVPAMSDESIIVKGNGTIFLAGPPL
                     VKAATGEEVTAEDLGGADVHTRLSGVADHFAEDEPEALRMVRNVVENLNSGPKTRLDV
                     QEPEPPRNDPEELLGIIPEDNRSPYDVREVISRIVDGSRFHEFKPRYGASLVCGFSRI
                     HGYPVGIVANNGILFSESSLKGAHFVELCGQRGIPLVFLQNITGFMVGREYEAGGIAK
                     DGAKLVTAVSCVPVPKFTVIIGGSHGAGNYGMCGRAYDPRFLFMWPNARISVMGGPQA
                     AQVLSTVKQDQRAREGLEPMTKEEVDAFEAPVLEKYETEGSPYYSTARLWDDGIIDPR
                     DTRDVLGLAISASMNAPLPDTNFGIFRM"
     gene            complement(2627..3982)
                     /locus_tag="HA345_00025"
     CDS             complement(2627..3982)
                     /locus_tag="HA345_00025"
                     /inference="COORDINATES: protein motif:HMM:NF014005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF63 family protein"
                     /protein_id="HIH83771.1"
                     /translation="MDAVRKRESLPDNQLSWWEKVSLWCLGIIILVTVSAFVSQTLAP
                     GNALQGILDTYFLDPIRDESLADGSYNQINTMAYNVTLILSVISIGAIMRWLRMPATE
                     CTILALIPWVFWAALGEVVEDASLFGAGLQPWFVSPGIHFQGALWVVVTGWLSVVASR
                     AADDGGRSWVTGMSIGMVAFQGFLFLTSLQDGRIGTPMEDHLNLWPVGIAGLLATFFI
                     LASHPMMERWTAVEQGLFQVGIGGCLVLYGCLHAYASMMSGLEVSGDLATIFAIDRTP
                     EMNLEVLLWTMALPAVILLLPIFYLSLPVREKLRRRGISVPGLLPPGLDLTSYENERT
                     QYHDDMESLAGLAVLSSPIVFLAIYGQAVDGIATGMGLEIYGYTEKHVLSAAVIEIFG
                     SAYGFTVLKVALGFVVWWFYALQRWEYRYRHLRILMGLALMTVGLAPGLRDAFRMALG
                     V"
     gene            complement(4034..>4536)
                     /locus_tag="HA345_00030"
     CDS             complement(4034..>4536)
                     /locus_tag="HA345_00030"
                     /inference="COORDINATES: protein motif:HMM:NF014133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83772.1"
                     /translation="MVEIGGCNGILKSFRSGRASIDFNHALAGVTLRYQYRITKVVSD
                     RAEKVTTLLETNTGRDGFECSFEGDDLTITLPEFVSYDQNWAYTKFGLIRTLRDHVGV
                     ETIIFREVHEPMKVEEEDESSSDEDLSSLSVADLKERCKAAGLPVGGKKADLIERLSA
                     SGSEEE"
BASE COUNT         1268 a         1237 c         1015 g         1016 t
ORIGIN      
        1 atactcggca ggcgatctca cctcgattcg caacgaggac gcttcggatg ggatgcgggg
       61 catccttcat ccaatcctgt tgcgtcattg gtttcactcc gattcgggct tccaattcgc
      121 aggacgcttc tctaggaacg aggataggcc ttcctgccct tcatctgacc ctcgcatctc
      181 acttgtctta tccaaagtcc agagtcggag ttcttcatct gtacccaccc aacgatcgaa
      241 agtaagcgtc agacgcttcg cctccgctac agccattgga cccgtagtaa ggacttcctc
      301 gatgacacct aaggctgctt catgtgccgc ttccggacta tcttcagcct gatcaaccat
      361 gccaattcgt aacgcttcct ccgcatcaat acggcctgca agcatggcca accgacgaaa
      421 ctgagatgag ccaacccttc gatagacgta agggccgatc acagcaggta gaatcccaag
      481 tttaccctct gagagagcaa tacgagtccg tggctcgacg atgacatggt caagacaggc
      541 aactaggcct gcacctcctc caagagccac accctgcacg ataccaatag tgaaacaagg
      601 atgagaccac agagtgttga ataatcgatc cagacgttcc gaatcaatcc ggttctcttc
      661 aggactcttg gcccccgcat cacgcatcat attgatatct gcaccagcac agaaatgtcg
      721 tccatttcca gagaaaatca acacacggat acaagaatca ccagaactat cgattagatt
      781 tcccatccga gcaacagaac gttttccagt ccaatccagc agagaaataa tctctgaaat
      841 catttggatg ttcatggcat tgaacacatc tgggcgtgtc aaagtgaggc gtgctacggc
      901 gccttcgatc tcaatactgc aaagttcggt atcaggaagg gcgtcggtca tcatcgtcat
      961 tctaaatcac atcctgaata tcccgaaatt cgtatcaggt aagggggcgt tcatactggc
     1021 actaatcgcg agaccgagaa catcacgagt atcacgagga tcgattatac catcatccca
     1081 aagacgtgct gtggagtagt aagggctgcc ttcagtttcg tatttctcaa gaactggcgc
     1141 ttcaaaggca tcgacctctt cctttgtcat aggttccaat ccctcccgcg ccctttgatc
     1201 ctgctttacc gtgctcaaaa cctgtgctgc ctgagggccg cccatcacag aaatacgagc
     1261 attaggccac ataaacagga agcgggggtc atatgctcta ccacacatgc cgtaattacc
     1321 tgcaccatgt gaaccaccaa tgatgactgt aaacttagga accggaacac aagagacagc
     1381 tgtaacgagc tttgctccat ctttggcgat acctccagcc tcatactccc taccaaccat
     1441 gaatccagtt atgttctgga ggaacactaa cggaatacca cgctgaccac aaagttcgac
     1501 aaaatgggcg cccttgaggg atgattctga gaacaaaata ccattgttgg cgacgattcc
     1561 cacaggatat ccatggatgc gagaaaaacc gcaaactaag cttgccccat atcgaggttt
     1621 gaactcatgg aagcgagaac catccacgat acgagaaatg acctcacgga catcatacgg
     1681 tgaacggtta tcttcgggga taatgccgag taattcctcg gggtcattgc gtggaggctc
     1741 aggttcctgc acgtcaagac gcgttttagg cccagaattg agattctcaa cgacgtttct
     1801 caccatacgt agcgcctcgg gttcatcctc tgcaaaatga tctgcaaccc ctgaaagacg
     1861 agtgtgtaca tcggctccac caagatcctc tgcagttacc tcctctcctg tcgcggcttt
     1921 cactaacggt ggccctgcta ggaatattgt tccattaccc ttgacaataa tcgattcgtc
     1981 tgacatcgca ggaacataag ccccacctgc agtgcacgag ccgcatacag cggcaatctg
     2041 aggaattcct tttcctgaca tcatagcctg atttcggaat atacgaccaa agtgcccctt
     2101 atctgggaac acctcatcct gcatcggtaa gaatgcccct ccactatcca caagatagat
     2161 gcaaggaaga taattctcat cagcaatctc ttgcgctcga atgtgtttct tcactgtcaa
     2221 cgggtagtat gaaccaccct tcacagttgc atcgtttgca acgaacatac attcacgccc
     2281 gtgtacgaca ccaatccctg tgacaactcc tgcagaaact gcacgaccat catacagccc
     2341 atgtgcggca agtggagatg tttcaagaaa tggagtgcca ggatcacaaa ttgcctcaat
     2401 ccgctccctt gccaatgctt taccacgact acgatgacgt tcgacatact tctccccgcc
     2461 accaagatgg acgcggtcga tttctgctcg aagttcagaa attaaggcct cattatgagc
     2521 cactcgtgca gagtatacct catccgaacg attgacacgt gtcggtagga catccatggc
     2581 gaacaatccc tcgcagagcg agaccgacct tcaatgaagc gggagatcat accccgagag
     2641 ccatacggaa agcgtctctc agacctggtg caagacctac ggtcatcaat gcgagaccca
     2701 ttagaatacg aagatgacga tagcgatatt cccatcgttg aagtgcatag aaccaccaga
     2761 caacgaagcc aagagcgact ttgagaactg tgaatccata agcggaacca aagatttcta
     2821 tgactgctgc tgaaagcaca tgcttctctg tatagccata aatctcgagg cccatgcctg
     2881 tagcaattcc atcaactgcc tgcccataga tagcaaggaa cacgattggt gatgaaagca
     2941 cagccaaacc cgctagagat tccatgtcat cgtgatactg tgttctttcg ttctcgtatg
     3001 aggtcaaatc caggccaggt ggtagaagac caggcacaga tattcctcga cggcgaagct
     3061 tctcacggac tggtagagaa aggtaaaaga ttggtaaaag gaggattaca gctgggagag
     3121 ccattgtcca aagtaggact tcgaggttca tctccggagt tcgatctatc gcaaagattg
     3181 tggcaaggtc tccagaaact tccagtccag acatcataga tgcataggca tgtaggcaac
     3241 catacaggac taggcagcca cctataccaa cttgaaagag gccttgttcg accgcagtcc
     3301 aacgttccat cataggatga gatgcaagga tgaaaaatgt agcaagtaaa cctgcgatac
     3361 ccaccggcca aagattcaga tgatcctcca tcggtgtgcc aattcgtcca tcttggagag
     3421 aggttaggaa aagaaatccc tgaaaggcaa ccatcccaat agacatacca gtaacccaag
     3481 atcggcctcc atcgtctgct gctcgagaag caacaacaga taaccagccg gtaacgacta
     3541 cccagagagc accctggaaa tgaatgccgg gggagacgaa ccaaggctgc agaccagccc
     3601 cgaatagaga agcatcctca acaacttcgc caagggcggc ccagaatacc catggaatga
     3661 gagcaagaat tgtgcattcc gtagcaggca tccgaagcca tcgcatgatt gcaccgatgc
     3721 taatcacgct aaggatcagc gtaacattgt aggccatggt gttaatctga ttgtaagacc
     3781 cgtcagccaa actttcatct cggattggat caagaaagta agtatctaag attccttgca
     3841 aagcatttcc tggcgccaac gtctgagaaa cgaaggctga tacagttacc aaaattatga
     3901 tgccgaggca ccagagggat accttctccc accaagacag ttggttatcc ggcaaactct
     3961 ctcttttccg gacggcatcc atgtcaattc gaaccctgta tggatgatga cgattacgcc
     4021 aataggtacc aaatcattcc tcttctgaac cagaagcgga gagacgctca atcagatcag
     4081 ccttctttcc cccaacaggg aggcctgctg ccttgcagcg ctccttaaga tcggctacag
     4141 atagggatga aagatcctca tcactagatg attcgtcctc ttcttcgacc ttcattggtt
     4201 cgtgaacctc acggaagatg attgtctcga caccgacgtg atcccgtagg gttcgaatca
     4261 atccaaactt ggtgtatgcc cagttctgat cgtaagaaac gaactcgggg agcgtgatcg
     4321 taagatcatc gccttcaaag gagcactcaa agccgtcacg accagtgttg gtctcaagca
     4381 aggtcgtaac tttctctgca cggtctgata cgacctttgt gatacggtac tggtaccgta
     4441 atgtgacacc agctagagca tgattgaaat cgatacttgc tcgtccagaa cggaacgact
     4501 tgagaatccc attgcaaccg ccaatctcaa ccatgc
//
LOCUS       DUKB01000003            9619 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_6377, whole genome shotgun sequence.
ACCESSION   DUKB01000003 DUKB01000000
VERSION     DUKB01000003.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9619)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9619)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9619
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_6377"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..314
                     /locus_tag="HA345_00035"
     CDS             <1..314
                     /locus_tag="HA345_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83773.1"
                     /translation="YQTRRTIEEAEDKLDESDSAPILAKVDELEALIRTDDGPIADDD
                     LDEAGIQSKVKELEEAMHGISAKLYEAAAAAMETENAGEAPSEDGVVDANFEVVDDDE
                     D"
     assembly_gap    447..755
                     /estimated_length=309
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<756..2164)
                     /locus_tag="HA345_00040"
     CDS             complement(<756..2164)
                     /locus_tag="HA345_00040"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013079.1,HMM:NF014808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HIH83774.1"
                     /translation="MDWKVTGHEATGDVMLLPLWQAKSKAPHLSLNGLARSAISNVKS
                     ALSGGRFDGKIGSTLSIWSDDCRVVLIGMGKADDLTHKIARDAGAKAIAGLSKKDGTN
                     LTVRFTTGWNLEGMKCFIEGMMLRDYTFLKYRKKAREEAEEKGNWKLTIQASERYLND
                     LQTDIKIIAARVDGVHIARDLGNEPPNHLYPMAYAERAQDWAKGKNNVKVEVYDWDRL
                     QKEEMGGLINVGKGSSRKPCMVIFTVNPQVDPKAQVPCIVGKGITFDTGGISLKPGAS
                     MDEMKYDMHGAATVFGLMHALHASGYKGRVHGIACLAENMPSAEAYRPGDVIPTYSGK
                     TIEVLNTDAEGRNVLADGLWKSGELNPEYVIDLATLTGAVVVALGHEATGLWSNNDDL
                     QERIHKAGNEEDEIAWKMPLLPAFEKEMTGSKIADVRNLGKSRWGGSCTAAAFLKQFV
                     PPRDFDEDNDQIPWAHLDIA"
     gene            complement(2189..3538)
                     /locus_tag="HA345_00045"
     CDS             complement(2189..3538)
                     /locus_tag="HA345_00045"
                     /inference="COORDINATES: protein motif:HMM:NF012471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83775.1"
                     /translation="MRGLAVLLAFIITAPVMVAAEQEWPGWPVDDHVHMTWAAMTIEV
                     NNWADDNPDIVDLVDVGDSELGKTLWVVRLSDWSTETKTDGSSKEVIYIDGGHHGNEY
                     LGTALAWLSAKWYIDGWNDGNEEAIHVLQNSEIHVLIMLNPDGNDFDTRWNINQVDLN
                     RNYDHYWNTCPTTQPGTSAFSEAETLANSNYMNTEVPDADLYVTMHTGVWIMLYPWGK
                     WPEQPSDWELFHQIRDDVHANISDIPIQNANQGLYPNCGTSRDYGYGVMGFPTFTFET
                     DDEQFIPVSSESLNERLEEEMDVMRYLIENVWHWRARLSVTMLDVTIGETVSLSVDNL
                     GQATTLNASLHYESPSGDVLWHSGSRFAVNATNSTSVTFDASNLTLIEDGSFVLHYQK
                     RVIDSSMWVSEPVNSSVVSLMEPEIGGFLPGPSVLIVITGFALAAHRRRSEFEGDVL"
     gene            complement(3602..4531)
                     /locus_tag="HA345_00050"
     CDS             complement(3602..4531)
                     /locus_tag="HA345_00050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019948643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase family protein"
                     /protein_id="HIH83776.1"
                     /translation="MDIHSFMESHYRHFNAGELTRCTNSLIEFLNADGQLVLALAGAL
                     STAQIGHSLAPSIREGKIHAISCTGANLEEDLFLLIAGDDYETVEDWRGQSLEEDQQL
                     FERGMNRVTDVCIPEEEAIRRVESMILEVWKEVPRLPHEHIYALLDRIDPGPRAKSSW
                     LIAAKEMGIPILVPGWEDSTLGNLFAAACIRGDLTVDMMRTGIDYMVGFADWYRSQNS
                     PVGFLQVGGGIAGDFPICVVPMLNQDLGAKVPLWSWYGQISESSTSYGGYSGAPPNEK
                     ITWGKIGIDTSRFVIESDATIVLPLVLTCLLES"
     gene            complement(4541..4960)
                     /locus_tag="HA345_00055"
     CDS             complement(4541..4960)
                     /locus_tag="HA345_00055"
                     /inference="COORDINATES: protein motif:HMM:NF014705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83777.1"
                     /translation="MSSTSDGKGLIPRGLHVHLDCVGYIPPATDDHSWILELMREAVR
                     NSNAREVHAHVVPFDGSVSPPGFAAVVLIDESHVTAHCYSDRGLLAIDAFTCGMTEPE
                     VIIDQLLQSITKEIPTLQVVNRNRTTRFLHDHSIESL"
     gene            complement(4988..5908)
                     /locus_tag="HA345_00060"
     CDS             complement(4988..5908)
                     /locus_tag="HA345_00060"
                     /inference="COORDINATES: protein motif:HMM:NF012703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83778.1"
                     /translation="MVERPTFLGLDEVHTNPDVVIIPIPYELTTSYGQGTSNGPMAAI
                     EASAQVEVFDPRLSQDLPAGARFQTLIPWSSEAGTLTEQITEIEGHLRPWLTNDDVFP
                     LILGGEHGLLPVQMRAINSHPALAGDISNLTIVQFDAHADLRDNLDGEVWSHACAARR
                     ALDEGVGKIIQIGVRAWSREEATLSDSDFRIETHLASNLLSLSSDGSNWSNLLASLRS
                     IHGPVWITVDIDALDGPLVPSTGTPVPGGLTWWHLEEAMAAIFEANNANVIGADVVEI
                     VPDSTGILTPFTAALIATRLVGGHLSTRIR"
     gene            6032..6445
                     /locus_tag="HA345_00065"
     CDS             6032..6445
                     /locus_tag="HA345_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83779.1"
                     /translation="MEIGGMTLKTLTDAIRSRVDEGMEENVAESIAEHALGFFGFSNR
                     IIDNALEPTDRNLFYQLQDYELLTTESEETTLWDGREWRIHYWKFKPKRVSEIAHRTA
                     VEEEVDPYAGLYDEVPTDIWREQAGFEHDDNEPLF"
     gene            6519..9554
                     /locus_tag="HA345_00070"
     CDS             6519..9554
                     /locus_tag="HA345_00070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83780.1"
                     /translation="MRRSIALLMVGILAMGLSPQTLLAAEEASTEDPCTVFVDWSNGT
                     SFQHAYRVVFDDSASLNLQWAEIEWSHENSTTVLHHDNSTIDLNLSEHRIVLPTEVNL
                     SETIVIEVIGAESNLTPLEQRTTLCSRTVEFTYWNQPTADHEITRATSWSLDQSGESG
                     EEYYLDFIGQGWQQRDGNLLTSNELGSGNVTIITDDGETRTETELELSRVWLNETMTD
                     TLLDEQTFEMYGNGSTTFVIVDDAGANTVAHIDVRDSYIVRTIANGIPSETVRIEGSG
                     DLSSNGTNDDESINITGEVAVFLFELETVDGQVIDSTYRLEAFAEMLLIDGNDRFQID
                     LDEFILVERWEDGEQVEQLSRIKGDGSFDFAESEDGATIVVNGTVPVFWLESQNGLTT
                     VNTIHMDGDISGDIDGRIGLIIEIEEQGPQQNATGETFDVNVIRSETWLNITQVTGIG
                     SNLDIEAEHNLTFDYQVPEEHWKNRTVRYRYVEDGGQVNDEYPERSPIPQDLPQPSND
                     SILGSVNISRELGYAPTTLIPGDILTLDAGDTLVLHVEAMSVSTVNLDGHTLPVTIWN
                     GTFEEGGHATGSIINEGILAGLIADVTRQVDIELDDGNLTFTETQALERILAPSIVTE
                     AENTPPTLEDIRFQEGSLSSEGGEAHIEVVVSDPDWNVKSVLVDLSSIGLGTVELNDV
                     GSDGDDTVHDDIWTAHIQHLGVEHGEFELNVTISDGWSITTDKDTVTIDNLAPRLKNV
                     DYEPQVVRRGDTIGVTIEAEDLHGITSASIDLQSTGGDVNNLAQGTDGAWSGSIVVPP
                     GMSPGLNRFTFTLVDNEGAIRVTDFITGSTGDIEAAPQFTILNEGPVLSDLVILRGID
                     TVEVLLVPDIGEESIEHTISIRVTDPDGISAVQARLGTLAAIGEGDDWTRLVDDGTNG
                     DSVAGDGNYSVTVMTRSTMPTGTMDIEIRGVDNFLEPTPGDERSFSITLSETDSEAIG
                     GWTVQTGVLVMIAVIALLAIGGVGIFVSLRGAEFGDDSL"
BASE COUNT         2576 a         2268 c         2212 g         2254 t
ORIGIN      
        1 tataccagac acgtcgaacc attgaggagg ccgaagacaa actcgatgag agtgactctg
       61 ctccgattct cgccaaggta gacgaactcg aggccctcat tcgtacagat gatggtccta
      121 ttgcagacga tgatctcgat gaagctggga ttcaatccaa agttaaggaa cttgaagaag
      181 caatgcatgg tatctccgcg aagctatacg aggctgctgc ggctgcaatg gagacagaaa
      241 acgccggtga agcacctagt gaagatggtg tcgtagatgc aaacttcgaa gtcgtagacg
      301 acgatgagga ctgaatagaa gcaattcaag atcctgtaat caggcgatga agcgtacgca
      361 cgtgtatgcc tgttgctccg tgtccaacca tcgaattagt gtccgcaccc catgctgtgc
      421 ctgcaatgtc aagatgtgcc caaggannnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnngcaat gtcaagatgt gcccaaggaa
      781 tctgatcatt gtcttcgtcg aaatctcgag gaggaacgaa ctgcttgagg aaggcggcgg
      841 ctgtgcatga acctccccat cgactcttgc caagattacg aacatctgca atcttggagc
      901 cagtcatctc tttctcaaaa gcgggaagaa gaggcatctt ccaagcgatt tcatcctctt
      961 cattgccagc cttatggata cgttcctgta aatcatcatt attggaccat agtccagtcg
     1021 cctcgtgtcc aagagcaaca acaacagcac cagtcaacgt tgcaagatcg atgacatatt
     1081 ctggatttaa ttcacctgac ttccagagac catcggctag gacattgcgt ccctctgcat
     1141 ccgtattgag tacctcaatc gtcttacctg agtaagttgg gatgacatct cctggccggt
     1201 aagcctctgc acttggcata ttctcagcca gacatgcgat gccgtgaaca cgacccttgt
     1261 aaccagatgc gtgcaatgcg tgcattagtc cgaaaacagt ggcagcccca tgcatatcat
     1321 acttcatttc atccattgat gcacccggtt tgagcgatat accacctgta tcaaatgtga
     1381 ttcctttacc aacaatacaa ggtacctgag ctttgggatc aacctgaggg ttgactgtga
     1441 aaatcaccat gcagggcttc cgtgaactac cctttccgac attgatcaat ccacccatct
     1501 cttccttttg caatcgatcc cagtcgtaaa cctcgacctt gacattattc ttgcccttag
     1561 cccaatcttg ggcacgctct gcatatgcca tcgggtagag gtggttcgga ggttcgttac
     1621 ctaggtctcg ggcgatgtgg acgccgtcta cacgagctgc aatgatcttg atatccgtct
     1681 gtaaatcatt tagatagcgt tctgaagcct gaatggtcaa tttccagttg cccttctctt
     1741 ccgcctcctc acgagccttc ttacggtact tgagaaaagt gtagtcacga agcatcattc
     1801 cctcgatgaa acacttcatt ccctcaaggt tccagcccgt agtgaaacga actgtaagat
     1861 tcgttccgtc cttcttagac aaacctgcta tggctttcgc acctgcgtca cgagcaattt
     1921 tgtgggtaag atcatccgcc tttcccattc caataagaac cacgcgacaa tcatcagacc
     1981 atatcgataa cgtcgatccg attttaccat caaatcgccc tcctgagagg gcgctcttca
     2041 catttgatat cgccgaacgg gcgagaccat tcaatgaaag atgaggggct tttgacttgg
     2101 cctgccaaag gggtagcagc attacatctc cagtggcttc gtgaccagtg accttccaat
     2161 ccatgaagcc gagtgtctct caatcggctt acaaaacatc gccttcaaac tcggatcggc
     2221 gacgatgggc agcaagagcg aatccagtga tgacgatgag gactgacggg cctggaagga
     2281 agcctcctat ttcgggctcc atcagggaca caacagagga attgacaggt tcactaaccc
     2341 acattgagga atctatgacc ctcttctgat aatgaaggac gaaactacca tcctcgatca
     2401 aagtgagatt cgatgcatcg aatgtcactg acgttgaatt ggtcgcgttg actgcgaatc
     2461 tactgcctga atgccaaagg acgtctccag aaggggattc gtagtgcaac gaagcattca
     2521 gggttgtggc ttgacccaaa ttatccactg ataaggacac tgtctcgcca atggtcacat
     2581 caagcatagt cacagaaaga cgggcgcgcc agtgccatac attttcgatg agatatcgca
     2641 tcacatccat ctcttcttct aggcgttcat ttagcgattc agatgaaacc ggaataaact
     2701 gttcatcatc ggtctcaaag gtaaatgtcg ggaatcccat gacaccgtat ccataatctc
     2761 gacttgttcc acaattaggg tatagccctt gatttgcatt ttgaataggg atatctgaaa
     2821 tgtttgcatg gacatcatcg cgaatctgat gaaacaattc ccagtcagaa ggctgttcag
     2881 gccatttacc ccatggatag agcatgatcc aaaccccagt gtgcatggtc acatacaaat
     2941 ccgcgtcagg gacttccgtg ttcatgtaat tcgaattcgc aagcgtttct gcttcactaa
     3001 atgcacttgt accgggttgt gtagtcgggc aagtgttcca ataatgatcg taatttcgat
     3061 ttaggtcgac ttggttgatg ttccaacgcg tatcaaagtc gttcccatcg ggattgagca
     3121 tgatgaggac atgaatctca gagttctgaa gaacatgaat agcttcctca tttccatcgt
     3181 tccatccatc gatgtaccat tttgcagaca gccatgctag agcggttcct aagtactcgt
     3241 tgccatgatg tcctccatcg atgtagatga cttctttcga acttccgtca gtttttgttt
     3301 ccgtggacca atcggatagt cgaaccaccc agagtgtttt tccaagttca gaatccccca
     3361 catcaactaa gtcgacaatg tcaggattat catctgccca gttattgact tcaattgtca
     3421 tcgcagccca agtcatgtga acgtgatcgt caacaggcca tccaggccat tcttgttcag
     3481 cagcaaccat tacaggagct gtaatgatga acgcaagtaa cactgctaac ccgcgcatca
     3541 cactgaaggt gtagtgattt ggatttgaga ttatgcatca atcaatgatt cgggtaatcc
     3601 atcaagattc taagagacag gtaagaacca gtggtaaaac gatagttgcg tccgactcga
     3661 ttacaaatct agaggtgtcg attccaatct taccccatgt aatcttctca ttaggtgggg
     3721 ctccagaata gccaccgtat gatgtggatg attccgagat ttgaccgtac catgaccaga
     3781 ggggcacttt tgcacctaga tcctgattca acatcggaac gacgcatatc ggaaaatctc
     3841 cagcaatccc ccctcccact tgtaagaagc caacaggtga attctgggaa cggtaccaat
     3901 ccgcgaaacc aaccatgtaa tcgatacctg tacgcatcat atctacagtc aaatcgccac
     3961 gaatacaagc tgcagcgaat aagttgccta aggtagaatc ctcccagcca gggactagaa
     4021 tagggatccc catctccttc gctgcaataa gccaagagga tttagcacga gggccgggat
     4081 ctatacgatc taacaatgcg tagatatgct cgtgtggtaa tcttggtact tccttccaaa
     4141 cctcaagtat cattgattcc acacggcgaa ttgcctcctc ctccggaata cagacatcag
     4201 tcacacggtt catcccacgc tcgaagagtt gttgatcctc ctccaagctc tgacctcgcc
     4261 aatcctctac tgtctcgtaa tcatcgcccg cgataagaag gaaaagatcc tcctcaagat
     4321 tagcacctgt acaggaaatc gcatggattt tcccttcccg tatagagggt gcaagagaat
     4381 gaccaatctg agcggtagac agtgctcctg caagagcaag cacaagctgg ccatccgcat
     4441 tcaagaactc gattagagaa ttagtacagc gtgtgagttc acctgcgttg aagtggcggt
     4501 aatgtgactc catgaatgag tggatatcca tgtatacgcc tcagagagat tcgatgctat
     4561 gatcgtgaag aaagcgtgta gtacggttac gattcacaac ctgtagagtt ggaatctcct
     4621 tggtaatgga ttgcagaagc tgatcgatga ttacctccgg ctccgtcata ccacaagtga
     4681 aggcatcaat tgccaacaaa ccacgatctg aatagcagtg ggcagtgaca tggctctcat
     4741 cgattaggac gactgcggca aaccctggag ggctgacaga gccatcaaac ggaactacgt
     4801 gagcgtgaac ttcacgagca ttgctatttc gcacagcttc acgcattagt tcgagaatcc
     4861 aactatggtc gtctgtagca ggaggtatgt aacccacaca atcaaggtga acatggaggc
     4921 cacggggaat cagacccttg ccatccgatg tactcgacat gggtctcatc gatttcatcc
     4981 tcgtatttca tcgaatccgt gtcgaaagat ggccccctac tagacgggtc gcgatgagag
     5041 cagccgtaaa tggggtcaga ataccggttg aatcggggac tatctcgacc acatcggcac
     5101 cgatcacatt agcattattc gcctcgaaaa tcgcagccat ggcctcctct agatgccacc
     5161 atgttaaccc tccaggtaca ggagtacctg tcgaaggaac aagaggccca tctaacgcat
     5221 caatatcaac tgtaatccaa acggggccgt gaatagagcg aagggatgct agaagattgg
     5281 accagtttga cccatccgaa gacagagaaa gaaggttaga tgctaaatgt gtctcgattc
     5341 gaaaatctga atctgataga gtcgcctcct cacgtgacca agcgcgaacg ccaatctgga
     5401 taattttgcc aacgccttca tctaaggctc tgcgcgctgc acaagcatga ctccacactt
     5461 caccatcgag attgtctctg agatctgcat gagcatcaaa ttgaacgatt gtcaaattgg
     5521 aaatgtcgcc tgccaaggct ggatgtgagt taatcgccct catctgcacc ggaagtaggc
     5581 catgttcacc tccaagaatc aatggaaaaa cgtcatcatt agtcaaccat ggacgaaggt
     5641 ggccctcaat ttctgtgatt tgttccgtaa gcgtacctgc ctccgaagac caaggtatca
     5701 atgtctgaaa acgtgcgcct gcaggaaggt cttgagagag acgtggatca aaaacctcga
     5761 cctgtgctga ggcctctatg gcagccattg gcccattaga agtcccttgg ccataggatg
     5821 ttgtaagctc atacgggatg ggtataatca caacatctgg gttagtatga acctcatcga
     5881 ggccgaggaa cgtcggtcgt tccaccatgg cccgaggggc gagcgctcag ggaagaacat
     5941 ggcgttcaag tcggcctatt tcagattcaa agggctaaat caagtgattc gttaaatagg
     6001 gcggcctcca ataatacagt gctgcggagg gattgaaatc ggtggaatga cattgaagac
     6061 gcttacagat gcaatccgaa gtcgcgttga cgaaggcatg gaagagaatg ttgcagagag
     6121 cattgctgaa cacgcgctag gtttctttgg attctcaaat cgaatcatcg acaatgcatt
     6181 ggaaccgact gatcgtaact tgttctatca acttcaggac tacgagcttc tcactactga
     6241 atccgaagag accacgctgt gggacggtag agaatggcga atccattatt ggaaattcaa
     6301 gccaaagcga gtgagcgaga ttgctcatcg cactgcagtc gaggaagagg tcgacccata
     6361 cgccggcctc tatgatgagg tgccaactga catctggaga gaacaagctg gattcgaaca
     6421 tgatgacaac gagccactct tctaatcggc cccacatctc ctttgaccgg agaaacgtcc
     6481 ccaatggttt gaatacggac cagagaacaa aacaaaccat gcgccgaagc attgcgcttc
     6541 tcatggtcgg aatcctagcg atggggctct caccacaaac actactcgct gctgaggaag
     6601 cgagtactga agatccctgc acagtgtttg tcgattggag taatggtacg tccttccaac
     6661 atgcctacag agttgtgttc gatgattctg cctccctcaa tcttcaatgg gctgaaattg
     6721 aatggtccca cgagaattca acgacagttt tgcaccatga taactctacg attgacctga
     6781 acctgagtga acatcgtatc gtgctaccta ccgaagttaa cctatccgag acaatcgtaa
     6841 tcgaagtgat tggagccgaa tcaaatctga ctccacttga gcagcgaacg acattgtgct
     6901 caaggactgt agaattcacc tactggaatc agccgactgc ggatcacgaa atcacccgag
     6961 cgacatcttg gagccttgat caaagtgggg aatccggcga agaatattat cttgatttca
     7021 tcggacaagg atggcaacaa cgtgacggaa acttgctgac atctaatgaa ctcggttcag
     7081 ggaatgtcac aatcatcacc gatgatggtg aaacacgaac cgaaacggaa ctcgagctca
     7141 gccgcgtctg gttgaatgag acaatgactg atactttgct cgacgagcag acctttgaga
     7201 tgtatggtaa cggctcaacg acattcgtta tcgttgatga tgccggagca aataccgttg
     7261 cacatatcga cgtgagggac tcatacatag tacgaacaat tgcaaacgga ataccatcag
     7321 aaaccgttcg gattgagggt agtggagatt taagctcaaa tggaaccaat gacgatgaat
     7381 caatcaatat cactggcgag gtagcggtat tcctctttga acttgaaacc gtagatgggc
     7441 aagttatcga ctcaacctat cgactcgaag ccttcgcaga aatgctcctt atcgatggca
     7501 acgatagatt ccaaatcgat cttgacgaat ttatccttgt cgagcgatgg gaggatggtg
     7561 aacaagtcga acaattgtct agaatcaaag gagacggtag tttcgacttc gcggaatccg
     7621 aggatggagc gacaattgtc gtaaacggaa cagtgcctgt tttctggctt gaatctcaaa
     7681 acggtttgac gactgtaaac acaatccaca tggacggaga tatcagcgga gatatagatg
     7741 gacgtattgg attgattatc gaaattgaag aacaaggccc tcaacaaaac gcaacaggtg
     7801 aaaccttcga tgtgaacgtg attcgtagtg agacatggtt gaacataacc caagtgacgg
     7861 gcatcgggtc aaatctagat atcgaggcag agcataatct caccttcgat tatcaagttc
     7921 ctgaggaaca ctggaaaaat cgtactgtgc gatatcggta tgtcgaggac ggtgggcaag
     7981 tcaacgatga ataccctgaa cgtagtccaa tacctcaaga tctaccccaa ccttccaatg
     8041 actccattct aggaagtgtg aacattagta gggaacttgg atacgcacct acgacgctaa
     8101 tacctgggga tatattgacc cttgatgcag gcgacacctt agtgctgcat gtggaagcaa
     8161 tgtcggtatc aaccgtgaat ctcgatggac atacgcttcc ggtgacaatc tggaacggta
     8221 ccttcgaaga aggaggccat gccactggaa gtatcatcaa cgaaggaata ctcgctggcc
     8281 tcatcgccga tgttacaagg caagttgata ttgaactcga tgatggcaat cttacattca
     8341 ctgagaccca agctctcgaa cgtatccttg cgccatccat agtaactgaa gcagagaaca
     8401 ctccgcctac tctggaagat atccgcttcc aagaaggtag cctgagcagt gaagggggag
     8461 aggctcacat cgaggtcgtt gtgtctgatc cagattggaa tgtcaaatcg gtcctagtcg
     8521 atttatcctc gattggcctc ggaaccgtgg agttgaatga tgtcggatca gacggtgacg
     8581 atactgttca tgacgatatc tggactgcgc acatccaaca tcttggagta gagcatggcg
     8641 aattcgaatt gaacgtgact atctcagatg gatggtcgat aaccactgac aaagacactg
     8701 tcactattga caatctagct ccacgtctga aaaacgtcga ctatgaacca caagtggtac
     8761 gaagaggtga cacaataggg gtcaccatcg aggccgagga tctccatggc attacatctg
     8821 catccattga tttgcaaagc acaggaggag atgtgaacaa tctagctcaa ggaaccgatg
     8881 gggcatggtc tggttccatc gtagttccac ccgggatgtc tcccggactt aaccgattta
     8941 catttactct cgttgataat gagggagcga taagagtcac tgatttcatc actggatcta
     9001 ctggcgatat tgaggcagca cctcagttca ctattctgaa tgaaggtcct gtcctctctg
     9061 acctcgttat ccttcggggt atcgatactg tggaagtatt acttgtcccc gatatcggtg
     9121 aagaatcgat tgaacatacc atctcaatcc gcgtcaccga ccccgatggg atttcagccg
     9181 tccaagcgcg ccttggcacc ttagcagcaa ttggagaagg agatgattgg actcgactcg
     9241 tcgatgacgg aaccaatggg gattccgtag caggtgatgg aaattacagt gtcacagtga
     9301 tgactcgttc cacaatgcca actggaacaa tggatatcga aatcagagga gtcgataact
     9361 ttctagaacc tacaccaggt gatgaacgga gtttctcaat tactctctct gaaactgatt
     9421 ccgaagcgat cggaggatgg actgttcaaa ctggtgtcct cgtgatgatt gcagtgattg
     9481 ctctccttgc aatcggagga gtcggcatct tcgtcagcct ccgaggagct gaattcggtg
     9541 acgattcact ctaaaaattg ctttttccct acaattgtga tgagtgagaa tgcgagtgcc
     9601 gggatttgaa cccgggttc
//
LOCUS       DUKB01000004           10924 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_48400, whole genome shotgun sequence.
ACCESSION   DUKB01000004 DUKB01000000
VERSION     DUKB01000004.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10924)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10924)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10924
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_48400"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1656)
                     /locus_tag="HA345_00075"
     CDS             complement(<1..1656)
                     /locus_tag="HA345_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83781.1"
                     /translation="MSTTASEHHNRATCQICGGGINRELDSWNGRIFHSACKIAATSA
                     RMEGRLPLPCETAYRRAVNIIDSCDGNTDLDRWGALKKAMVNLPLVNAVQPNLNLKDK
                     WTDEERWQWEALAEEIGDADFVKRIATKKAFGMKSIAELPIPNGHLTFDIHSSELVQQ
                     GHIGNRAVPLFDLGYLISSGETGGLGSGFNDWKAFIQCLWAIGSGTYSEGSYHTTQSM
                     QKSKTLVEGLYSIPGPWTANPFSAIHAWLSMEYSDGGHPFQVDHWLARNRLISFLGGP
                     VVHAWERLLVGDEKETTRVVSNRGSLTCLKGELFLPIMRGNEIELIDVPLDLDLWRIL
                     ITLKMYPYDTELGDLLLALGHCWESNRKAPEDANSRSLRLLNSVMDVESDSIQVVDDY
                     IVVEGQSGLGHRLKISSEQKMFIRSYRSMEVAMNPDPNEVYFEPCIDMNESQPIGDMI
                     VTYLLTLRNDIETKNRVDTLEPVVDIRLSFKSVPTAVAWAKAMQTHYHDRIEEDPWFE
                     EEEELLEFNPMEVEGWDDEVEDGDGADEEPIFAGWSVSMIDEFL"
     gene            1750..2370
                     /locus_tag="HA345_00080"
     CDS             1750..2370
                     /locus_tag="HA345_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012066121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HIH83782.1"
                     /translation="MSAACSEVYDVAKSAYHHVREAWKRPKANMSTHHRRDRQAQWRK
                     EPVFQRIAKPTRIDAARRMGYKAKQGVVMIRTRARRGGLRKGKIHMKRKPSKAGIRKI
                     TMAKSIQRIAEERVSRRYPNLEVLNSYWVGQDGKNKFFEVICIDPAHPAIKSDKHLGA
                     ITNSSNRGRAYRGKTSAGKRGRGLFNKGKGAEKLRPSLAANKNRGK"
     gene            2423..2677
                     /locus_tag="HA345_00085"
     CDS             2423..2677
                     /locus_tag="HA345_00085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018034460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="photosystem reaction center subunit H"
                     /protein_id="HIH83783.1"
                     /translation="MSDLRAEQLRNLPVILPDGRALGVVHDAIVETETTSITHLFVTN
                     PPVHLVEDGVHIAIPWRWVRSIGDVVLLRWFPQTPVPKSR"
     gene            2798..3805
                     /locus_tag="HA345_00090"
     CDS             2798..3805
                     /locus_tag="HA345_00090"
                     /inference="COORDINATES: protein motif:HMM:NF012955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH83784.1"
                     /translation="MTPGGAVLIDCGEGMQERIAVHDRWLRRIGSEDRTRLGRVRAVL
                     LTHGHLDHCWGLLPMLHTMDKDGRTAPLAIHGPTSRAALRWIEEGHNSAPSPDSGIHP
                     GDLAIQFDWWRRHGGKEGTLRFDVQWNLHPVDDIGIDGVEILNLDGTLFHAFHTNHGV
                     PSIAYRVRTPSVPGRFNIEDARASGLDEAAIRDIAKDSNSDEHRGPRRQERTLILSGD
                     TAANVPSFNEYIGPVDVLVHEATFDDAHEEQASAYGHSTARQAAHVGVAMGARLVALN
                     HFSSRFQDLSHLGDEATEAHPNCHLLEDGDRLQIDRDGMIRVHRRNTDTWEHILDLGL
                     E"
     gene            3852..6194
                     /locus_tag="HA345_00095"
     CDS             3852..6194
                     /locus_tag="HA345_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83785.1"
                     /translation="MRQVILLVTVLLFSAAVPTTLATSARTLDCSDASGDGAWVLPDQ
                     DCIMFDLGSITPGDTIQFGFDSDVEVDVLMFSAAGYAVYSNDQSYRSANVWSEAGTLE
                     LLNGTADWRWTAPEDRSQTSWILIIDNLDHPQDDGQGALGGSAASGSIAYGPATIRSW
                     TLHDTLTLLDTDEGVDLAGPFSFMEGTQVLIETFAIDGAPDVFLMTQQQRDLYLQDSS
                     NDFRISDTEILSITTSSSRSWSVPSVHADQPLHLMVDNTASPNGGGSGAVSARVGVVL
                     SILPVVDAVLTSTADLLKVDVGQIVNIDASGSPDDWNQIVENGYVWDTALADCATSTT
                     GSSVDLCWTTEGVRTVEVTVDSIDGRSATNSLQVTVVDQTNPTAEILVSGIIDRGVGE
                     SFTITARSTDNGFVQKEEWFVDGLLEKSSNGSGSSFTHSFDDVSDVGPHTVTLVVHDG
                     AGNTQEDTADIEVSDVTAPIIDNVTGPASKEYGAIATFSATASDPEDSELNFTWDFDS
                     TVDSDGNGIPDDDVDGNGSMVEIQFTSAGSRFVICTATNDAGLSTSKSTSITILNPDA
                     EDTGSGFPHGTLFVTLLFTIIPFVIAVGILLWRRSTNQLAARLLAERQAEEEAAASAP
                     PPTAEEQAAMFASRSNGEDFASIAGIAQRDYSSTTSTESDSRSSPVLDDLFSDDDEVP
                     DVETKAIDNASNSATSAEMSGVSTPNPAPSRLGIEIPDFDTDSTASPSSSSEVQSSDS
                     LMVQATCTSCEARFKVELPSGRSSGRTACPSCGDIQTVSR"
     gene            6229..10731
                     /locus_tag="HA345_00100"
     CDS             6229..10731
                     /locus_tag="HA345_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83786.1"
                     /translation="MSSSKLQSMAPLVERNLPRKSLVLVIIMVLSVWLPVPAVSGAIQ
                     IDNRDFGVLAELYGALDTRSELLIDDGEGALAANSMRSVDSSIRNSSSSDALESADDP
                     IPDASWKNITIEPVQHPSPYEIILNPSSAPPGATDSILNTLINITDYVIWTQYETVNG
                     EVVDKFEVIDFSASLFSLFPPLPGQPTADPFLHEIDIDNLLNDGSTSTNQNSGDLTEE
                     GDCGYDISVGLTIAIDSGDGWGVEGTNIWVEPTIEFSVKMFNGGVSTFDADCDETPES
                     ETGDAVWDSMKTLRVSLFKQFTYSESLFFGSPGPSYIWVIDTHYTIPPEDTSLEVGIE
                     RIWFDAPGTVLSALNGPLGLLGLLGVDTSGIKIVSIAAPYAIHLETLGTTACPTGYDP
                     VFDVDVNPILHGCGTQAGFGYVHLNEPVNGQREAIEVAYIEFSAHPAAGDDRIPSEVD
                     LVIRTDSVLSTTAADIGEGSLTSIEYFADRRADIHVHFHEDRRNVAPSTIDGSFGNVT
                     ESAGWLRGMPAGSLDQLEIERVFKMLGSDKSPELPGRLPERLGLIIAIKNFSKDNSPN
                     ANDPSLPVNPADPPQSLVVIRSVQSVTEIDYGSWFLREGADEDRRQIRTRLIGIPTTL
                     VLFGSFAIDGGDDGTNATLDDPNGASLDIFSRILDTTILNLVDIFINIGSALNAVPQA
                     LGEALSGGLEAGNGLEGTEFHLQMFDDLGVNRIPDRLDLVEMDLGTSNHPTLAGDHIF
                     LSEDRDLDLVQGRTNSREPLMPIALSIRLSGFSAADISDDQFLDEQMLTLETVNSQPL
                     RVGFIQHNADSLIGASLHIVQISALPDQMSMSLQPSKTFWNASDSVDEITYIGLSEDQ
                     RQVVRMRDVPMSFEMEVADSFSWVATEPMSSVEIQVSNHTAPKTMDDDHFLFNYDGLT
                     DTAYLSARITNLSEITFIEADTDADPEALDSIRLRVDGNRTFRSSIQHVPGPNDPATR
                     GLHLRALIDPLPGIISMDIPNTEDLNGPSIVIPEFNTTQGLRGIADFMDSFSEMGRSV
                     NQVLADLSETVTGQAGEERASEFQFGFEFDADRHFDLTVDAVQGSMAIDEPEWRHGIS
                     MNSGVEGEEQGFHVRAWLPGLAPDVKLDLRFQNESGLEIWNIEVEMSDWQPLREEFII
                     QIAGFDAQDLDFSLIGFQPGESTEVAIQTSFSTRDLGATSEVTTSTSYQLSHRLDYVV
                     ASILNRDLGTRSQLFVSDIPAIIDLYASIGQSISVSLDVPESERIQGDSVGSVMLQQL
                     QWFEGQWWPATIFLKDVPGEIDLTTEPANVFDITQPTSFQGVPEFDFSASGPGMDLYM
                     EISGRAINTKGDTVLLAENLMEEMTVSLDENFHLAIRSSGEGIGKLYLRQSDVPAQPG
                     IRLIQMEALGENLKSATISLTEVGLYPVFRIGDVQGGRIVLSARASVDFMGMTFDGRA
                     VLLDAQQTSGIPTGTTIGVNGLASDLSLLNVMPGFDGSTTHYMVPEPLTTGVLTLCTT
                     IFGGGS"
     gene            10731..>10924
                     /locus_tag="HA345_00105"
     CDS             10731..>10924
                     /locus_tag="HA345_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83787.1"
                     /translation="MVLDNLDDLESELEDTSLEIAGRRVSLSDVERAHGALESARTVA
                     AAVTPGRVILATGLILLLLL"
BASE COUNT         2654 a         2603 c         2716 g         2951 t
ORIGIN      
        1 gaggaattca tcaatcattg atacactcca accagcgaat ataggctctt catctgcccc
       61 atcgccatcc tccacttcgt catcccatcc ttccacttcc attggattaa attcgagaag
      121 ttcctcctcc tcctcaaacc aaggatcttc ctcaatcctg tcatggtaat gtgtttgcat
      181 tgctttagcc catgcaactg cggttggaac agatttgaag gataatcgaa tatccacaac
      241 tggttccagt gtatctactc tgtttttggt ctcgatatcg tttcggagag tgaggagata
      301 agtcacaatc atatcgccaa ttggttgaga ttcgttcata tcgatacatg gttcaaagta
      361 cacctcattt ggatccggat tcattgccac ttccatgctc cggtaagacc gaataaacat
      421 tttctgttcc gaggatattt tcaaccgatg tccgaggcca gattgccctt caacaacgat
      481 gtaatcatcc acaacttgta ttgaatcgga ttctacatcc attacagaat tgagcaaacg
      541 aagtgaacga gagtttgcgt cttcgggggc ttttcgattg ctctcccaac aatgacctag
      601 ggcgagaaga aggtccccta actcagtgtc atacgggtac atcttgaggg tgatcagaat
      661 cctccagagg tcgagatcga gtgggacgtc gatgagttca atttcatttc ctcgcattat
      721 gggcaggaag agttctccct tcaggcacgt caaggagcca cggttagaca caactctcgt
      781 agtttccttt tcgtccccga cgagtaaccg ttcccatgca tggactacag gtcctccaag
      841 gaaggaaatc aatcgatttc gtgcgagcca atggtctact tggaatggat gtccaccatc
      901 actgtattcc atactgagcc aagcatgaat tgctgagaat ggatttgcag tccatggacc
      961 aggtatactg tataggcctt caacaagtgt ctttgatttc tgcattgatt gggtagtatg
     1021 atatgagccc tcactgtaag ttccagaacc aatggcccac aagcattgaa tgaaagcctt
     1081 ccaatcattg aaacctgagc ccagtcctcc cgtttcacca gatgagatga ggtatccgag
     1141 atcaaagagg gggactgcac ggtttcctat gtgtccttgt tgaaccagtt cggatgagtg
     1201 gatatcgaag gttagatgtc cattaggaat tggtagttcg gctattgatt tcatgccgaa
     1261 tgctttcttc gtagctattc tcttaacgaa atctgcatct cctatttctt cagctaaagc
     1321 ctcccattgc catcgttcct catcagtcca tttgtctttc agatttagat tgggctgaac
     1381 cgcattgacc agtggtaggt tcaccatcgc tttcttgaga gccccccagc ggtccaaatc
     1441 ggtgtttccg tcgcaactat ctatgatgtt aacagctcta cggtatgcgg tttcgcacgg
     1501 taaaggtaag cgcccctcca ttcttgccga tgttgcagcg attttgcaag cactgtggaa
     1561 aattctccca ttccaactgt ccagctctcg atttatacct ccaccacaga tttgacaggt
     1621 agccctgtta tgatgttcag aagccgtggt agacatgcta aagaaagtgc acatcgagag
     1681 ggtataaacc gaacatgatt cggccaagac gactgcgttg tctggcccga ttcttcttat
     1741 atggggggaa tgtcggctgc ttgctcagag gtgtatgacg tggccaagtc tgcttatcat
     1801 cacgtccgag aagcgtggaa gcggcccaag gccaacatgt ctactcatca ccgtcgggac
     1861 cgtcaggccc agtggcgtaa ggaaccggta ttccagcgta ttgccaagcc tactcgtatc
     1921 gatgcggcgc gtcgtatggg gtacaaggca aagcagggtg ttgtgatgat tcgaacccgc
     1981 gctcgccgtg gtggactccg taagggtaaa atccacatga agcggaagcc atccaaggct
     2041 ggtatccgga agattacgat ggctaagtcc attcaacgta ttgctgagga gcgtgtctcc
     2101 cgtcgttatc ctaatcttga ggttctcaac tcgtattggg ttggccaaga tggaaagaac
     2161 aagttcttcg aagtcatctg tatcgatcct gcgcaccctg caatcaagtc cgacaagcat
     2221 cttggcgcga ttactaactc cagcaaccgt ggtcgtgcat atcgcggtaa gaccagcgct
     2281 ggtaagcgcg gccgtggact cttcaacaag ggtaagggtg cagagaagct ccgcccgagc
     2341 cttgcagcca acaagaatcg aggtaagtga ccttctccga ttcggataag gttcaatggt
     2401 aggcacctct gtttgacgcc tgatgtcgga cctccgtgcg gaacagttgc gaaacttgcc
     2461 cgtgattctc ccggacgggc gtgcacttgg tgtcgttcat gatgcaattg tcgagacgga
     2521 gactacatcg atcacccacc tcttcgtcac aaacccacct gttcatctcg tcgaagatgg
     2581 cgtgcatatc gccattccat ggcgttgggt ccgttccatt ggtgatgtcg ttcttctccg
     2641 ttggttccct cagacgccag tacctaagtc tcgctgaaga cattcggatg gattcatgag
     2701 caaagcccac ggctcattct acgtgctctc cctccatgta ctcgggacct cgtcggcgaa
     2761 accgacgaag ggaaggagtg tttcggggtc ttacttaatg acgccaggtg gggctgtcct
     2821 catcgattgt ggtgaaggaa tgcaggaacg cattgctgtt catgatagat ggttgcgtcg
     2881 aattggttca gaggatcgga cgcgcctagg ccgtgtacgt gctgtgttgt tgacacatgg
     2941 ccatctcgat cattgctggg gacttctccc tatgcttcat acgatggata aagatggtcg
     3001 aaccgcacca ttagctatcc atggaccaac gtctagagcg gctcttcgtt ggattgaaga
     3061 gggtcataat agtgcaccta gtccagattc tggaatccat ccaggagatc tcgccattca
     3121 gtttgactgg tggcgcagac atggtggaaa ggagggcacg ttgagatttg atgtgcaatg
     3181 gaatctgcat ccggtggacg atattggaat agacggagtt gagattctca atcttgatgg
     3241 aaccttgttc catgcttttc acaccaatca tggtgttcca tcgattgcct atagggttcg
     3301 tacacccagt gttcctggac gattcaatat cgaggatgca cgtgcatcag gtcttgacga
     3361 ggctgcaatc agagacattg ctaaggattc aaattcggat gaacatcgag gtccacgtag
     3421 acaagagagg acattgattc tttcaggtga tactgctgca aatgtcccct cgtttaacga
     3481 atatatcggg ccagtggatg ttcttgtgca tgaagcaaca tttgacgacg cgcatgagga
     3541 gcaagcttcc gcttacggcc atagtactgc taggcaagcg gcccatgtgg gtgtggcgat
     3601 gggggcacgc ttagtcgcct tgaaccattt ctcatcacgc ttccaagatt tgtcacatct
     3661 aggcgatgaa gcgacagagg ctcatccgaa ctgtcatttg ttggaggatg gggatagatt
     3721 acagatagat cgagatggaa tgattcgagt tcatcgtcga aatacggata cttgggagca
     3781 tatcctagac cttggattgg aatgaagcgt ttagcggttt gattcaagag atgcacgttc
     3841 agttcagcat catgcgtcag gtgatactgc tagtcactgt tctccttttt tctgccgcag
     3901 ttccgacgac attggccact tcagcacgaa ctctggactg ttcggacgct tcgggtgatg
     3961 gtgcatgggt tctccctgat caagattgca ttatgttcga tcttggtagt atcactcccg
     4021 gcgacacaat tcagtttggc ttcgattccg atgttgaagt ggatgtactg atgtttagtg
     4081 ctgcaggata tgccgtatac tcaaacgatc aatcctaccg ttcagcaaac gtatggtcgg
     4141 aggcaggtac gcttgagtta ctcaatggaa ctgctgattg gcgttggaca gccccagagg
     4201 atcgaagtca gacatcttgg attctcataa tcgataatct ggatcatcct caagatgacg
     4261 gtcaaggcgc tctaggaggg tccgcagcat ctggctcgat tgcatatggt cctgcaacaa
     4321 tccgttcttg gacgctacat gatactctga ctcttcttga tacagacgaa ggagtagatt
     4381 tggcagggcc gttctctttc atggaaggaa cacaggtact gattgagaca tttgcaattg
     4441 acggggcccc agatgtcttt ttgatgacac agcagcagcg cgatctctat ctccaagaca
     4501 gttccaacga cttccgaatt tctgacacgg agattctctc tatcaccact tctagttctc
     4561 gatcatggtc cgttccttca gtccatgccg atcaacctct ccaccttatg gtcgataaca
     4621 cggcttcacc caatggcggt ggttccggtg ctgtttctgc acgtgtcgga gttgttcttt
     4681 ccattctccc ggttgtggat gcagttctca cgagcacggc agatctccta aaggtggatg
     4741 taggacagat agttaacatc gatgccagtg gttctcctga cgattggaat caaattgttg
     4801 agaatggata cgtatgggat accgcactag cagattgtgc tacatcgacg actggttcca
     4861 gtgttgattt atgttggacg actgagggtg tcaggactgt tgaggttacc gtagattcaa
     4921 ttgacggtag aagtgcaaca aactctcttc aagtcacggt tgtagatcaa acaaatccta
     4981 cagcagagat tctagtatcg ggaatcatcg atcgtggagt cggtgaatca ttcactatca
     5041 cggctcggtc cacagacaac ggttttgtac agaaggagga atggttcgtt gatggactct
     5101 tagagaagag tagcaatggt tcagggtcaa gtttcactca ttccttcgat gatgtatcgg
     5161 atgtaggacc tcatactgtg acacttgttg tgcatgatgg agctggaaat acacaagagg
     5221 acaccgctga tatcgaagtg tctgatgtca ccgctcctat tatcgataat gtcaccgggc
     5281 cagcctcaaa ggagtatgga gcgatagcaa ccttttctgc tacggcatcc gatcctgaag
     5341 attccgaact taatttcacg tgggattttg acagcacagt cgattccgac ggtaatggaa
     5401 tcccagatga tgatgtagat ggaaatggaa gtatggtaga gattcagttt acatcggcag
     5461 gtagccgctt cgtaatttgt actgcaacca atgatgcggg cctatctaca tcaaaatcga
     5521 catccattac tatcctcaac cccgatgcag aggatactgg aagcggattc cctcacggta
     5581 cactttttgt tacccttttg ttcactatca ttccttttgt aatcgcagtc ggaattcttc
     5641 tgtggcgccg tagtacgaat cagcttgctg cccgcctcct tgctgaacgc caggcagaag
     5701 aggaggctgc tgcgtccgct cctccgccaa cagccgagga gcaggcagca atgtttgctt
     5761 ccaggagtaa tggagaagat ttcgcatcca ttgcaggtat tgctcaacgt gattactcat
     5821 ccacaacatc aactgaatct gatagccgta gttcgcccgt gttggatgat cttttttcag
     5881 atgatgatga ggtccctgat gtggaaacga aagctatcga taatgcttca aatagcgcta
     5941 catcggctga gatgtccggt gtttctaccc cgaatcctgc tccgtctagg ctcggaatcg
     6001 agattccgga ttttgataca gattcaacag catctccctc ttcttcgtca gaggtgcaat
     6061 catctgattc tttgatggtg caagcaacct gcacatcctg tgaggcccgt ttcaaggttg
     6121 aactcccgtc aggacgtagt tctggccgta ctgcatgtcc ctcttgcggc gatatacaaa
     6181 cagtatcccg atgagcctct gaagcacaac cacgggaata gcctaaagat gagttcgtcg
     6241 aagttacaat cgatggctcc cttagtcgag cgcaatcttc ctcggaagag tctcgtattg
     6301 gtcatcatca tggttctctc tgtgtggctc cccgttccgg cggtgagtgg agcaattcag
     6361 attgacaatc gagatttcgg ggtccttgca gaactctacg gcgcccttga tactcgttcg
     6421 gaattactaa tcgatgatgg cgagggggcc ctcgctgcaa attcgatgag atcagtcgat
     6481 tcctcaattc gtaattcctc ctcatcagat gcgttggaat cagcggacga tccaatcccc
     6541 gatgcctcat ggaagaacat caccatagaa ccggtacagc atccgagtcc atacgagatt
     6601 attcttaatc cttcgagtgc accacctggg gccactgata gcatactcaa tacactgatt
     6661 aacatcaccg attatgtcat ctggacacaa tatgagaccg ttaacggaga agttgtggat
     6721 aagttcgaag tcattgattt ctctgctagt ttgttttcgc ttttcccccc tctacctggc
     6781 caacctaccg ctgatccgtt tctccatgaa atcgatattg acaatctctt gaatgatggc
     6841 tccacatcga caaatcagaa ttcaggcgat cttactgagg aaggagattg cggatacgac
     6901 atatcggtgg ggcttacaat tgccattgat tcaggcgatg gttggggtgt tgagggtacg
     6961 aatatctggg ttgagccgac aattgagttc agcgtgaaga tgttcaatgg gggcgtatcg
     7021 actttcgatg ccgactgtga tgaaacacct gaatcagaga cgggggatgc tgtatgggat
     7081 tccatgaaga ccttgcgtgt ctctctgttc aaacaattca cctattctga atccttgttc
     7141 tttggttcgc ctggtccaag ttacatttgg gtcatcgata cccactacac aatacctcca
     7201 gaagatacat ctcttgaggt tggtatcgag agaatttggt tcgatgcccc tggaacggtc
     7261 cttagtgcct tgaatggtcc cttaggattg ctgggtctcc ttggtgtgga tacctcaggg
     7321 atcaaaattg tctctattgc tgctccatat gcaatccatc tagagactct agggaccact
     7381 gcctgcccaa cgggatatga tccggttttc gatgtcgacg tcaatccgat tttacatggt
     7441 tgtggaacgc aagcaggatt cggatatgta cacttgaatg aacccgttaa tggacaacgt
     7501 gaagcaatcg aggtcgccta tatcgaattc agtgcacatc cggccgcagg cgacgatcga
     7561 atcccatcag aagtggatct cgttatacgg actgattctg tactgtctac gactgcagct
     7621 gacataggag aggggtcact cacttcgata gaatactttg cagatcgaag agcggatatc
     7681 catgttcatt tccatgagga tcgaagaaac gttgccccat ctacaattga cggctctttc
     7741 ggtaacgtga cagagagtgc agggtggctg cgtgggatgc ctgcgggatc attggaccaa
     7801 cttgagattg agcgtgtttt caagatgcta ggttcggata agtcccccga acttccgggg
     7861 cgactcccag aacgactagg attaattatt gcaatcaaga attttagcaa ggacaattcg
     7921 ccgaatgcaa atgatcccag cctccccgtg aatcctgcag atccgccgca gtcactggtc
     7981 gtaatccgat cagtccaatc ggttacggaa attgattacg gctcttggtt cctcagagaa
     8041 ggtgcggatg aggaccgacg ccagatacgt acccggttga ttggaatccc aacaactctc
     8101 gttcttttcg ggagtttcgc aatcgatggc ggagatgatg gaacgaatgc gacattagac
     8161 gaccccaacg gtgccagttt ggatatcttc tcccgtattt tagatacgac tattctcaac
     8221 cttgtggaca tattcatcaa tatcggttca gcgttgaatg cagttcccca ggctcttggc
     8281 gaagccctct ccggagggct agaggctggt aatgggctcg aaggaacgga attccatctc
     8341 cagatgttcg atgatctagg agtaaatcga attccagata gattggacct agttgagatg
     8401 gatcttggca cttctaacca ccctacattg gcaggagatc atatcttttt gtcagaagat
     8461 cgagatcttg atcttgttca ggggcgaacc aattctcgtg aaccattgat gccaatagcg
     8521 ctcagcatcc gtcttagtgg attcagtgca gccgacattt ccgatgatca atttttagat
     8581 gagcagatgc ttacgttgga aactgtgaat tctcagccat tgcgtgttgg tttcatccaa
     8641 cataatgctg acagcctcat cggggcgtca ctccatattg tgcagattag tgcattacct
     8701 gaccaaatgt caatgtctct ccaaccaagt aagaccttct ggaatgcaag cgactctgtc
     8761 gacgagatta cctacatcgg actttccgag gatcagcgac aagttgtccg catgcgagat
     8821 gtaccaatga gtttcgagat ggaggtggct gactcgttct catgggttgc aacggaacca
     8881 atgagtagtg tagagattca ggtgagtaac cacacggctc ctaaaacaat ggatgatgat
     8941 catttcttgt tcaattacga cggtctcact gatacagcat atctttctgc tcggataacg
     9001 aatctttctg aaatcacctt catcgaagca gatactgatg cggatcctga agctcttgac
     9061 tcaatccggt tacgcgtgga cggtaaccgt accttccgct cttcaattca acacgtgcct
     9121 ggaccaaatg accctgcaac acgcggtctc cacctcaggg ccctgattga cccacttccc
     9181 ggcatcatat cgatggatat cccaaacaca gaggatttga atggaccaag tattgtcatt
     9241 cctgaattca acacaaccca aggactgcgt ggaatcgcgg atttcatgga ctccttttca
     9301 gagatggggc gatccgtaaa tcaagtgctt gccgatttgt ctgagactgt gactggccaa
     9361 gctggtgagg agcgcgcttc tgagttccag tttggtttcg agtttgatgc agatcgccat
     9421 ttcgatctca ctgttgatgc agttcaaggt tccatggcca tcgatgagcc agaatggcga
     9481 cacggtatct cgatgaattc aggtgtggaa ggcgaagagc aaggattcca tgttcgtgct
     9541 tggctccccg gtctagctcc tgatgtcaag ttggatttgc gtttccagaa tgaatcaggc
     9601 cttgagatat ggaacataga ggtggagatg tctgattggc aacctctacg tgaggagttc
     9661 atcatccaga ttgctggttt cgacgcccaa gatcttgatt tctcattaat tggcttccaa
     9721 ccgggtgaat caactgaggt tgcaatccag acatctttct cgacaaggga tctaggggcg
     9781 acttcagagg ttaccacctc caccagttac caactctctc atcgactcga ctacgtagta
     9841 gcctcgattc taaatcgtga tttagggaca cgatcacaac ttttcgtgtc tgatatccct
     9901 gcgattatcg atctctatgc ttcaattggc caatcaattt cggtttcgtt ggatgttcca
     9961 gagtcagaac gaattcaagg tgattcagtt ggatcagtga tgcttcagca acttcaatgg
    10021 tttgagggtc aatggtggcc tgcaacaata ttcctcaagg atgtacctgg ggagattgac
    10081 ctaacaaccg agcctgcgaa tgtcttcgac ataacacaac caacatcctt ccaaggtgta
    10141 ccagagtttg atttctctgc atctggcccg ggtatggatc tctacatgga gatatcaggt
    10201 cgagcaatca acacgaaagg ggacacagtt ctcctagcag agaatctgat ggaggagatg
    10261 acagtatcat tggatgagaa tttccatctg gcgattcgat catctggaga aggtatcggt
    10321 aaactctacc ttcgtcagag tgatgttccc gcccagccag gtatccgact gattcagatg
    10381 gaggcattgg gtgagaatct gaaatccgca acaatcagcc ttactgaagt aggcctctat
    10441 cctgtgttcc gtattggtga tgtccaaggt ggaaggattg tgttgagtgc tcgtgcctcg
    10501 gttgatttca tgggtatgac gtttgatgga cgcgcagttc tacttgatgc gcaacagact
    10561 tctggcatcc caacagggac cacaatcggg gtcaacggtt tggcttctga cctatcgttg
    10621 ctcaatgtga tgcctggctt cgatggttca acaactcatt acatggtacc tgagccgttg
    10681 acaacaggcg tcttgactct ttgtaccacg atatttggag gtggatcctg atggttttgg
    10741 ataatttgga tgatcttgag tctgaattgg aagatactag ccttgagatt gctggacgtc
    10801 gagtatcgct ctcagatgtt gagagagcgc atggagcgtt ggaatctgca cgcacagtgg
    10861 cagcagcggt aaccccgggc cgagtaatac ttgcaacggg cctaatcttg cttcttctcc
    10921 tcag
//
LOCUS       DUKB01000005           10259 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_90052, whole genome shotgun sequence.
ACCESSION   DUKB01000005 DUKB01000000
VERSION     DUKB01000005.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10259)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10259)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10259
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_90052"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            133..978
                     /locus_tag="HA345_00110"
     CDS             133..978
                     /locus_tag="HA345_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83788.1"
                     /translation="MENSAHRDVAITLQLALFYTTIGVIVTRILSIIFPLSIGVFEIH
                     ISFIAMIVLCWSTITLLSPVQDRPSARTIAATFTSIGSILDETFWMVVRNPPLIPDSP
                     AQVGYWSAESMIFTIFSFALLMLLTWLAISKWHNYKPIPRLTWWEILFFILVMYAGLV
                     AFQMSQASIRFEIPNAERSLMIFGYEIHHIVQGQFILMIATIIMLTASGRPLPRRISF
                     ILATLGCLFVADQILYYQFDLVTDERYFGAVTRISGAIACSIMAGRLIYLKLKNSENL
                     GVEEE"
     gene            975..2273
                     /locus_tag="HA345_00115"
     CDS             975..2273
                     /locus_tag="HA345_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83789.1"
                     /translation="MNWEDNVDWGEPNKPTEHQVGIPSDPTRVAEPPIVSGQQVPTTI
                     DSREMMPDGLAPPIDQIGSQPNPSIHTSRQRTSISEALNQKDGTITQYLSTRGLNPLY
                     IILGIYSIWHLAITAMAFASASGGPEWIGRTCQLSITPSDCGTNPWTEWWTDLRIIAE
                     VIWCVPFILMIFFNSKMLSSSREICEEFILTESELNDAKMSIPSVKVRKWVLGIYLAW
                     FLTYGTLTHYDVVSFGVLGIIVLWPVYIIQGILIADTASIMPIFKRIFDNRNKFRLEP
                     FEPSGTAGVEPFAENVGSLAQIPLAFAFTMIVRSYIFLVIGGGESDPIRALGEMIVAI
                     VMIGIALGISAGPLFLIGNNVLERREEMIGTLATRNGLRDLEISQLPEIELTANRTAD
                     MILIERIQDIQPVDSSTIMKILLKAAIPGILAVIRPLLGM"
     gene            2854..3591
                     /locus_tag="HA345_00120"
     CDS             2854..3591
                     /locus_tag="HA345_00120"
                     /inference="COORDINATES: protein motif:HMM:NF012760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83790.1"
                     /translation="MSKPVFAYLLLSEHPYGREMLRQILSEGFVPSIIISEDSDIGDE
                     EREKFLKRIEGNPIAPTIENQLKSLKSNGINVPHINVPIHNTEHVMPHIEGMELDLIV
                     FGGTRIIRGPILDHPKDGVINSHPGLLPDCRGSASPAWSVYHDIPIGSTTHFCDNGID
                     TGDILLRREVGVRRGMTYEDLCYETLVLAGVLMKEALMAWDVDEWASMKMKQGESDWP
                     TFRNAPPEILEVVDQKLKDQTYAHYID"
     gene            3601..4362
                     /locus_tag="HA345_00125"
     CDS             3601..4362
                     /locus_tag="HA345_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HIH83791.1"
                     /translation="MENPYRTDAFNGMRALVCGASKGIGRATAELLATCGAEVFAVSR
                     SAPEITGCTSIPCDLENETERKAMMKNILDGGPIHILVNNAAGPKGGPLLDANLDEFE
                     APFKRHLHASHQLVQKAVPGMKDAGIGRIVNIISTSVKEPIPNIGVSNTLRGAMASWS
                     KTLSRELPECITINNVLPGFTDTDRLASLADSIHERTGQSVEDVQSIWLNQVPIGRLI
                     QPSETAAAIAFLCLPQSGGIRGVSLPVDGGRLRSI"
     gene            4393..5292
                     /locus_tag="HA345_00130"
     CDS             4393..5292
                     /locus_tag="HA345_00130"
                     /inference="COORDINATES: protein motif:HMM:NF024816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH83792.1"
                     /translation="MEETLTPEAAASLLQAVAEGDGIEDSVSVQTLLALAEMALDLER
                     LPLCERLAESGHRRAVAEDATEEAAWALFLIARVILKDALGRIEEALLAQQEVNLDAR
                     LVGALNEARDAAESIGDQRLIGNIDQLQGIHHRAIGDLHRARQLFTSSLAAKTDTGDG
                     LGAANSLHNLGELEMSLENHENALGFFDRAAEAFEGVEEPLEGAHSLSLASHALIHLD
                     RLDEARERLETSLDIGRDAQDESTQIVAHWGLADIGHLTEDIPLELENLQAAVVLFIH
                     LEQAVPDHLRTRLDAMIDALDSE"
     gene            5337..6578
                     /locus_tag="HA345_00135"
     CDS             5337..6578
                     /locus_tag="HA345_00135"
                     /inference="COORDINATES: protein motif:HMM:NF012517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HIH83793.1"
                     /translation="MEFDVFLSISQTPDAAGTMPDEATMLRNYFDQVEAADHLGYGVA
                     WIAQAHLSTMVQKTNLNPVVPHFPGEIGLCTDFFQLAGATFARTERIEIGSAVLSILA
                     NGGPIATAERIGNLCQLRGLSNDKRRVHIGFSAGRFEFMARPYGVLPRDPVEAAAWSV
                     LRSRIFKEATEIMLRLLRGDAISSDDIETTVLVHDDFRNDEDWQNIQKIAKEEYDLPT
                     LPDSIPIARRYAFETLKTIPSDWPRNRLNLVLGSHDPVTQTFANQFMPVQVFNLSITP
                     AEIIDATHERMAESYHADGGPWQRRMMPRTVMVFLNEEPNLTPEERSRAAREEAHSAL
                     RCYWAALDGTIDPTKVERATDNAVIGNAEEVAAQILERFHPEDRLMCWFDFFNHDSPR
                     VVRSMEAFMEKVQPLIEEAIK"
     gene            6575..7738
                     /locus_tag="HA345_00140"
     CDS             6575..7738
                     /locus_tag="HA345_00140"
                     /inference="COORDINATES: protein motif:HMM:NF017864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HIH83794.1"
                     /translation="MSEEHRPSSVAPGRPGSGVYPSNPLGESHEGIPTGRDVEWEPLV
                     DFRRLDVSENTIHGAVAWVHGNEIIHSFGGNVLVYGRSMMKPIIMKIFTDELDDILTD
                     EQKAIACSSHNGDTEHVAAAQSILAESEWGLMQCPLDVPLIQFGRQVRRPRRWFHTCS
                     GEHAAILRALRLRGANRAGYTLPTAPWFIEYQEKIREMIGDKDWKPLRTAKDGCGLPT
                     VSNTVNELALLFSALVREKDDDWIWDSMHQYPDLIGGFNRLDSTIIKAGGGRVLAKEG
                     ADGLLGLAIEHEDWPEGLGIVIKIAHGWNSQATWYIARAVLGVLGIDLRNPYPLHRQK
                     AFIVPGIVPEQYLQQLETVVTWDEWDPDRDRFQVLNNHNNGEPKDPHANEGRM"
     gene            7744..9189
                     /locus_tag="HA345_00145"
     CDS             7744..9189
                     /locus_tag="HA345_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018623285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HIH83795.1"
                     /translation="MVTLENHINGKRQLPASGNYLDDYAPATGERIALIPRSTEIDVN
                     QAVAAAKEAGQGWAALSKEVRANWLDRIADALEECHDEIARLESMDTGKPISIARAVD
                     ANRSVANFRFYADLIRNLEDQEFQMPDATNRVLRRPVGVGVLITPWNLPLYLLSWKVA
                     PAIGMGNTVVCKPSELTPMTADLLMRVIEKVGLPAGVVNLIHGTGAEAGAPLVEHKDV
                     RFVSFTGGTDTGAVVARSTAGSFKKLSLELGGKNATIILDDCDLDRHMDAIVRASYLN
                     QGQVCLCGSRILVHSSIKETFTRRFVDAVEHLRIGNPSDESTELGSLISPEHLSKVQS
                     YVTLAIEEGGTVLTGGGMPCLTDALEGGNWITPVVIDGLATDSRCSTEEIFGPMVTLH
                     SFNSDDEAIRIANGTRYGLAGSIWTTDLERGERIAQSLDTGMVWVNTWLHRDLRVPFG
                     GVKDSGLGREGGYWSLGFYSEATNICIMKDE"
     gene            complement(9198..9701)
                     /locus_tag="HA345_00150"
     CDS             complement(9198..9701)
                     /locus_tag="HA345_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83796.1"
                     /translation="MRWERMPFGLAFVPFHLSMCVSCCVTLFVDLNSFGLDAPVFSLI
                     LLSLLVLCVQFVHVDPSGRGNERSLGALVGLQFGYWPTAVVGLVWPFIVAVIWLIQCS
                     RIWRYSYPPFRIGLWAGFGASTGLIAGQIGAAVLEMAFLITITLFGIIFPLLYWSLGR
                     LPLDEEE"
     gene            9793..>10259
                     /locus_tag="HA345_00155"
     CDS             9793..>10259
                     /locus_tag="HA345_00155"
                     /inference="COORDINATES: protein motif:HMM:NF014899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA U-34 5-methylaminomethyl-2-thiouridine
                     biosynthesis protein"
                     /protein_id="HIH83797.1"
                     /translation="MDGEIVLGALAPHPPHLVYAENPPENEPNAECGWEGLRWGYHRL
                     AKKLSTIDYDAIVIFSPHWQTYIGTHFLGLPHFESLSVDPVFPNLFRYSYSIDVDVDL
                     AEAMAKEASDAGMVTRMMQNPDFRIDYGTIVSCHMVNPNWSKPIVTISSQRST"
BASE COUNT         2882 a         2486 c         2438 g         2453 t
ORIGIN      
        1 tttcattccg tcgacccggg ttcaaatccc ggtactagca tccaaaaact gcccgatgtg
       61 accggctaat catcaaacta gaagcatatt tcttgcaaaa tcactaagag tctttccata
      121 agatggaaaa tcgtggaaaa ctctgctcat agagatgtgg caataactct acagttggca
      181 ttattctata ctacaatagg agtcattgta actcgaattt tatccataat tttcccatta
      241 tcaatcggtg ttttcgaaat tcacatctca tttatcgcaa tgattgtgct gtgttggtca
      301 acaattactc tactatcccc ggtgcaagat agacccagtg cccggacaat cgcggcaaca
      361 ttcacctcaa ttggatctat tctcgatgag acgttctgga tggtcgttcg gaacccacca
      421 ctaatccccg actctccagc tcaggtggga tactggtcgg cagagtcaat gatttttaca
      481 atattttcat tcgcccttct gatgctattg acatggttag caatctcgaa atggcataat
      541 tacaagccaa ttcctcgatt aacatggtgg gaaatcctat tcttcatcct ggtaatgtat
      601 gctggcctag ttgcctttca gatgtctcag gcatcaattc gttttgaaat cccgaatgct
      661 gaacgttcat tgatgatttt tggttatgag atccaccata ttgtccaagg ccaattcatc
      721 ctaatgattg ctaccataat catgttaact gctagtgggc gcccccttcc cagaagaatc
      781 tctttcattt tggcgacact cgggtgtttg tttgtcgcag atcaaatcct ttactaccaa
      841 ttcgatctcg tcacagatga acgttacttc ggcgcagtga ctcgaattag tggagcgatt
      901 gcttgctcca tcatggccgg tcgtttgatt tatctcaaac tcaaaaatag tgagaatctt
      961 ggagtagaag aagaatgaat tgggaagaca acgtcgattg gggcgaaccg aataagccaa
     1021 cagagcacca ggtaggaatt ccatccgatc caacaagagt tgcagaacca cccatagtca
     1081 gcggacaaca agttccgaca actatcgatt caagggagat gatgcctgat ggtctggcac
     1141 ctcctataga tcaaatcgga tcccaaccga acccatcgat tcacacctct aggcagcgta
     1201 catcaatctc agaagcacta aaccaaaaag atgggacaat tactcaatat ctctcaacac
     1261 gcggattgaa tccattgtat atcatccttg gaatctactc aatctggcat ctagcaatca
     1321 ctgcgatggc tttcgcctcc gcaagtggcg gacccgaatg gattggacgt acatgtcagc
     1381 tctccattac cccttccgac tgcgggacta acccttggac tgagtggtgg actgatttac
     1441 gaatcatagc agaagtcatt tggtgcgtac cattcattct aatgatattc ttcaacagta
     1501 aaatgctctc atcctccagg gaaatttgcg aggaattcat acttactgaa tcagaactca
     1561 acgatgccaa gatgtcgatc ccatcagtta aggtcaggaa atgggtccta ggaatctatc
     1621 ttgcatggtt cctaacatat ggtacattga cacactacga tgtagtttca ttcggggtat
     1681 taggtatcat cgtcctctgg ccagtatata ttattcaggg aatccttata gcagatactg
     1741 cctcaataat gccgattttc aagagaatct tcgataatcg gaataagttc aggcttgaac
     1801 cgtttgaacc atcaggaaca gcaggtgtcg aaccattcgc cgagaacgtg ggatctctgg
     1861 ctcaaatccc tttagcattc gcatttacta tgattgtacg atcttatatt tttcttgtaa
     1921 taggtggtgg agaatctgac ccaattcggg ccttaggaga aatgatagta gccatcgtaa
     1981 tgattggtat tgcattagga atttcagcag gacccctatt cctgattggc aataacgtct
     2041 tagaacgaag agaggaaatg attgggactt tggcaacaag gaatggtctt cgcgatttgg
     2101 agatcagtca acttcccgaa atcgaattga cagccaatag aacagctgat atgatcctca
     2161 ttgaacggat tcaagacatc caacctgtgg attcatcaac cataatgaaa atcctattga
     2221 aggccgctat tccgggtatt cttgccgtaa ttaggcctct tcttggaatg tgaaaattcg
     2281 tttagtcggc ttaattatac caatcatagg cctcttgaat ggttgacaac gccgattccg
     2341 ttgcaggttc ggcaaattcc attggttcgc atccctgttt gcgaacaatc catacaatcg
     2401 gcaatctcaa tagaacgctt actggtagac attattcgtt tcaacacaaa aaatgccaag
     2461 tttaaggcgg ggattgctaa tattatgcca atcataagtc tatcatattc acttagggga
     2521 attacgtcgc cgaagccaat acttcccgaa atataatcca ctataacaaa caaaataaga
     2581 agctgcaatg aacgataaag aaggtcttcg acggaattga atagccaaat aaaagggatt
     2641 ttgaagccgt attgctttat tttcgcttta aaatgaattc ttttgaagtg atcagaagtt
     2701 tgagcaagtc cagatttagg cttcgacatc acacttccgt actctaatat tgcatataga
     2761 atgtgcagaa agttagcatt atttcatatt gagacaacaa atgtatcaaa cagtggaaaa
     2821 gcgttcaaag gccatcatgc aggagttgat tctatgtcga agccggtatt cgcatacctc
     2881 ctgctctcgg agcaccccta tggtcgtgag atgttgcggc aaatactctc cgaagggttc
     2941 gtgccgtcaa tcatcatcag cgaagattca gacataggcg atgaagaaag agagaaattc
     3001 ttgaagcgta tcgaaggaaa tccaattgca ccgacgattg agaatcaact caaatccctc
     3061 aaatctaacg ggattaatgt ccctcacatc aatgtcccaa tacacaacac agaacatgta
     3121 atgcctcata tcgaaggaat ggaactagat ctcatcgttt tcggaggtac tcgaatcatt
     3181 cgtgggccaa ttcttgatca tcccaaagac ggcgtcatta acagccaccc tgggctccta
     3241 ccggactgca gaggttctgc atctcctgct tggtcagtat atcatgacat tccaattgga
     3301 tcaacgacgc atttctgtga caatggcatc gacacaggcg acatactcct gcggcgagaa
     3361 gtaggtgtac gtcgcggcat gacttacgag gacctctgct acgagacatt ggttcttgca
     3421 ggtgtactca tgaaggaagc cctgatggca tgggatgtag atgagtgggc atccatgaaa
     3481 atgaaacagg gagagagcga ttggccaaca ttcagaaatg cgcctcccga gattcttgaa
     3541 gtggtagacc agaagctcaa agatcagacc tatgcgcact acatcgattg aggtgaaatg
     3601 atggaaaacc catacagaac ggacgcattc aacggcatga gggcactcgt atgtggcgct
     3661 tcgaagggca tcgggcgagc tactgcggag ttgcttgcta cctgtggtgc agaggtattc
     3721 gccgtcagcc gctccgcccc tgaaattaca ggttgtacgt ctatcccctg tgaccttgag
     3781 aatgaaacag aacgcaaagc aatgatgaaa aatatcctcg acggaggccc catccatatc
     3841 ctcgtaaaca acgcagcagg tccgaaagga ggtccacttc tggatgcaaa tctcgatgaa
     3901 ttcgaggccc cattcaagag gcatctccat gctagtcacc aattggtcca gaaagcagtt
     3961 cctggaatga aagatgcagg gattgggcga atcgtgaata tcatatcgac gagcgtaaaa
     4021 gagccaatcc cgaacatagg tgtatccaat acattgcgcg gggcaatggc ttcgtggtcg
     4081 aagactttga gtcgagagtt gccagagtgc atcacaatca acaacgttct ccctggattt
     4141 accgacactg atcggttagc ctcactcgca gattcaattc atgagaggac tggacagagt
     4201 gttgaggatg tacaatctat ttggctaaac caagtaccga ttggacgtct aatccaaccg
     4261 tctgaaacag cggctgcaat cgccttcctc tgcctcccgc agtccggagg gatacgagga
     4321 gttagccttc ctgtcgatgg tgggcgactc cgatcaatct gaaaagatat ggtgaattag
     4381 agaggtgaat gaatggaaga aacactgacg cccgaagcag cagcaagcct cctacaggcc
     4441 gtcgctgagg gcgacggtat cgaagattcg gtatccgttc agaccctgct cgcactcgca
     4501 gagatggctc tcgatctaga gcgactcccc ctctgtgaga gattagctga gtccggccat
     4561 cgacgtgcag tcgcagaaga tgctactgaa gaggcagcgt gggcactatt cctgattgcc
     4621 cgtgtaatcc tcaaggatgc actgggccgg attgaagaag cgcttcttgc ccagcaagaa
     4681 gtgaacctcg acgcacgact agtaggggcc ctgaatgagg cacgcgatgc cgccgaatca
     4741 attggtgatc aacgactaat tggcaatata gatcagttac aaggcatcca tcaccgcgct
     4801 attggtgacc tccaccgtgc gagacaattg ttcacctcct ctttggccgc aaaaacggat
     4861 actggagacg gcctcggtgc agcaaacagc ttgcacaatc ttggcgaact cgaaatgtca
     4921 ttggagaatc acgagaatgc actcggattt ttcgatcgcg ctgcagaggc cttcgaaggg
     4981 gtcgaggagc cgttagaggg agcacattca ctctccctcg ccagccatgc actaattcat
     5041 ctcgatcgcc tagatgaagc aagagaacga ttggagacct cactggacat tggtagggac
     5101 gcacaagatg aatctactca gattgttgct cattggggcc ttgccgacat agggcaccta
     5161 acagaggata tcccacttga actcgaaaat ctccaagcgg ccgttgtttt gttcatccac
     5221 cttgagcagg cagtccccga ccatttgaga acgcgattgg atgctatgat cgatgcactt
     5281 gattctgaat gaaatcagcg cgaaccctca agtgcagaac cgaggtgaag ataacgatgg
     5341 agttcgatgt tttcctctcc atcagtcaaa ctcctgatgc agcaggtact atgcccgatg
     5401 aagcaacaat gctgaggaac tactttgacc aggttgaagc cgccgatcat ctcggttacg
     5461 gggttgcatg gattgctcag gcacacctct caacaatggt tcagaagacg aatctgaatc
     5521 cagttgtccc tcactttccc ggcgaaattg gcctctgcac agatttcttc caactcgctg
     5581 gagcgacatt cgcacgaaca gagcgtatcg agattgggtc tgcagtgcta agcatcctgg
     5641 ctaacggagg acccatcgcc acagcagaac gaatcggcaa cctctgccaa cttcgtggac
     5701 tcagtaatga caaacgccgt gtacacatcg gattcagtgc aggacgcttt gagttcatgg
     5761 cacgacccta cggtgtgctc ccaagggacc ccgtagaagc tgctgcatgg tcagtacttc
     5821 gtagccggat tttcaaagag gctactgaaa ttatgcttcg cctactcaga ggtgacgcaa
     5881 tttcatcaga tgacattgaa acaactgttc tcgtccacga tgactttcga aacgacgaag
     5941 attggcaaaa tatccagaaa atagcgaagg aagagtatga cctacccaca ttacctgatt
     6001 caataccaat cgcgcgacgc tacgcctttg aaacgctaaa gacaatccct tcagactggc
     6061 ctcgaaatcg gctgaacctc gtcctaggtt cacacgaccc tgtaactcag accttcgcga
     6121 accaatttat gccagtgcag gtattcaatc tcagcatcac gcctgcagag attatcgatg
     6181 ccactcacga acgaatggct gaatcctacc atgctgatgg tggaccatgg caacgtcgta
     6241 tgatgcctcg gacagtgatg gtattcctca atgaggagcc aaatctgaca cccgaagaaa
     6301 ggtcacgggc agccagagaa gaagctcatt cagccttacg ttgctattgg gctgctcttg
     6361 acgggacaat cgaccctaca aaggtggagc gcgcaaccga caacgcagtt attgggaacg
     6421 cggaggaagt agcggcacaa attctcgaac gattccatcc agaggaccgt ttaatgtgtt
     6481 ggttcgattt cttcaatcac gattcgcctc gtgtagttcg cagtatggag gcgttcatgg
     6541 agaaggtcca gccgttgatt gaggaggcga taaaatgagt gaagaacatc gcccctcttc
     6601 agttgcccca gggcgacctg gctcaggtgt ctatccttcc aaccccttag gtgaaagtca
     6661 tgagggaatc ccaacagggc gggatgtcga atgggagcca ctagtagatt tccggagatt
     6721 ggatgtctct gagaacacga ttcatggagc agttgcatgg gtacatggca acgaaatcat
     6781 ccattccttt ggaggcaacg ttctggtcta tggtcgatca atgatgaaac caatcatcat
     6841 gaagatcttc accgacgaac ttgatgatat attgaccgat gagcagaagg caatcgcttg
     6901 ttcatctcac aacggagata ctgagcatgt cgctgctgca cagagtatcc tcgcagaatc
     6961 ggaatgggga ttgatgcagt gtcctctcga tgtgccgctc atacaattcg gacggcaagt
     7021 tcgacggcct cgccggtggt tccacacctg ctccggtgaa cacgccgcaa ttctccgagc
     7081 acttcggctc cgtggtgcta atcgagcagg ttacactctt ccaactgcac cctggttcat
     7141 cgaataccag gaaaaaatcc gagagatgat tggagataaa gattggaagc cactgcgaac
     7201 tgcaaaagat ggatgtggtc tacccacagt atcaaacact gtcaacgaac ttgctcttct
     7261 cttctctgcc cttgttcgtg agaaagacga tgactggata tgggactcaa tgcatcaata
     7321 tccggatctt attggaggat tcaatcgact tgattcgacc atcatcaagg caggaggtgg
     7381 acgtgtactc gcaaaggagg gcgctgatgg cctacttgga cttgccatag agcacgagga
     7441 ttggccagaa ggcctaggta ttgtaatcaa aatcgctcat gggtggaata gtcaagccac
     7501 ttggtacatc gcccgagctg tccttggagt ccttggtatc gacctcagaa acccctaccc
     7561 actccaccgt caaaaggcgt ttatcgtccc tggtatagtc cctgaacaat atcttcagca
     7621 acttgaaaca gtagtgacat gggatgaatg ggatccagat cgagaccgtt ttcaggtcct
     7681 caataatcac aacaatggag aaccgaaaga ccctcatgcc aacgaaggtc ggatgtgaat
     7741 cacgtggtaa ccctcgagaa tcacataaat ggaaagcgac aactcccagc gagtggtaat
     7801 tatctcgatg attatgcccc tgcgactggc gaacggattg ccctaatccc acgttcgaca
     7861 gagattgatg tgaatcaggc agtagccgca gcaaaggagg ccggacaagg atgggctgca
     7921 ctctccaagg aagtaagagc caattggtta gaccgtattg ctgatgcgct ggaagagtgt
     7981 cacgacgaga ttgctcgcct tgaatcgatg gatacaggaa aaccgattag tatcgctcga
     8041 gcagtggatg caaatcgatc cgtggccaac ttccgcttct atgcagacct tatccgaaac
     8101 ctcgaggacc aagaattcca gatgccggat gcaacaaatc gcgttctaag acgccccgtt
     8161 ggtgttggtg tactaatcac gccttggaac ctcccactct atctcctatc atggaaggtt
     8221 gctcctgcga ttggaatggg gaatactgta gtatgcaaac ccagtgaact cacaccgatg
     8281 actgcggacc ttctgatgag ggtaatcgag aaagtcgggc tacctgcggg cgtagtgaac
     8341 ctcatccatg ggaccggggc cgaagcaggt gctccattag tagaacataa ggatgtgaga
     8401 tttgtttcat tcacgggagg aaccgataca ggagcagttg tcgctcgctc tactgcaggt
     8461 tcattcaaga aactcagctt agaactggga ggaaagaatg ccacaatcat actcgatgac
     8521 tgtgacctcg acaggcatat ggatgcaatt gtccgtgcat catacctcaa ccaggggcaa
     8581 gtctgcctat gcggcagccg cattctagtt cactcctcga ttaaggagac attcacacgc
     8641 cgcttcgtcg atgctgtgga gcatctcagg attggcaacc cctcggacga gtctacagaa
     8701 cttgggtcac tcattagccc agaacacctc agtaaggtgc aatcctacgt taccctagcc
     8761 atcgaggaag gaggcacagt actcacagga ggaggtatgc cctgcctaac tgatgccctc
     8821 gaaggaggta actggattac tcctgtggtc atcgatggtt tagcaactga ttctcgttgc
     8881 tctacagaag aaatttttgg cccaatggtt acactacatt ccttcaattc ggatgatgaa
     8941 gcgataagaa tagccaacgg aacccgctat ggcctcgcag gaagtatctg gaccacagac
     9001 ctagaacgag gcgaacgtat agctcaatca ttggacaccg gaatggtatg ggtaaacaca
     9061 tggttgcatc gggatctacg cgtaccattt ggaggagtga aagacagtgg cctaggacgc
     9121 gaagggggct attggagcct cggattttac tccgaagcaa caaacatctg catcatgaaa
     9181 gacgaataat ggaaatctta ctcttcttca tcaaggggta agcgacctaa tgaccagtag
     9241 agtaatggga aaataatccc gaacagagtt attgtgatga gaaatgccat ctctagaacg
     9301 gcagccccaa tctggcccgc aataagcccc gtgctcgctc caaatccagc ccacagacca
     9361 attcgaaacg gaggatacga atatcgccag atcctagagc attggattag ccagattact
     9421 gcaacaatga atggccatac caaaccaaca acagccgtag gccaataacc gaactgaaga
     9481 cccactaatg cacccaaaga gcgttcattc ccacgtccag atggatccac atgaacgaat
     9541 tgaacacaaa ggacgagaag gctcagtaag ataagagaga atacaggggc atcaagacca
     9601 aaggaattca agtcgacaaa tagtgtcaca cagcaggaaa cacacatact cagatgaaac
     9661 gggacaaagg ctaggccaaa cggcatgcgt tcccaacgca tgattcgggg cttggctccc
     9721 tatcattgaa ctatcgcaca aaccatggtt tggaatggtt gaattgatgt gctttgtgaa
     9781 tctcgcagta tcatggatgg agaaattgta ctaggggctc tggccccgca tccgcctcat
     9841 ttggtatatg ctgagaatcc tccggaaaac gagccaaatg cagaatgcgg atgggagggg
     9901 ctacgttggg ggtaccaccg gctagcgaag aagctcagca caattgacta cgacgccatt
     9961 gtcattttca gcccacattg gcagacatac ataggcacac acttcctcgg attacctcac
    10021 ttcgagtccc tctcagtcga cccagtattt ccgaacctgt tcagatattc ttactcaatc
    10081 gacgtagatg tagatcttgc tgaagcgatg gcaaaggaag catctgatgc aggtatggtc
    10141 acacgaatga tgcagaaccc tgattttaga atcgattacg ggactattgt ctcatgccat
    10201 atggtcaatc cgaattggag taaacccatc gtgactatct caagtcaacg atctacaca
//
LOCUS       DUKB01000006            3181 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_336343, whole genome shotgun sequence.
ACCESSION   DUKB01000006 DUKB01000000
VERSION     DUKB01000006.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3181)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3181)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3181
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_336343"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..594)
                     /locus_tag="HA345_00160"
     CDS             complement(<1..594)
                     /locus_tag="HA345_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83798.1"
                     /translation="MAWRAFGSNRAEDGVLEISVQSTMRIKEDLGAVTISIGDANARY
                     ETGDILAIRTQRIERTLVPAWRIVLESREGPRDLITLGSESDALSVAEEIARLGHSRL
                     IEHTGRIVERDEHGLTVLQQIARHPTRWPRPHRTPSMQGSVKVEDDSVVMDLPSEVQT
                     SGFLISALLFASTLIAGPLFLLVAGQIVGYGRTTLVYG"
     gene            665..1690
                     /locus_tag="HA345_00165"
     CDS             665..1690
                     /locus_tag="HA345_00165"
                     /inference="COORDINATES: protein motif:HMM:NF012488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HIH83799.1"
                     /translation="MADILSVQRLQAIAQDEIQKWSKGIVHPASGSSESSDASSIAIE
                     EARQKIESLLPGGNVWFTSGPDEAANWAIKGIAAAQRRRGNKIIASPDSHLSILNATR
                     SIQGEGDVVAITGSAINIETGVLLDAQKWAHNASETYPLARRIIDARGAIGRIELEPL
                     TLVSDAIILDSETCGGPAGVGALWIRTGVRIEPLIHGSGQEKGRRSGTVPIGLVCAFA
                     AACIEADMRRTTNTELWNQHHSQLEEKIRSINGEIHGASEARAPGITCASIPGEFAEI
                     RLQHLEERGIIASPASGCSSTAGKPSHVLTSMGIDTDTAMRSLRFSLPVDTSSRDLNR
                     LLEALQN"
     gene            complement(1694..2092)
                     /locus_tag="HA345_00170"
     CDS             complement(1694..2092)
                     /locus_tag="HA345_00170"
                     /inference="COORDINATES: protein motif:HMM:NF014233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HIH83800.1"
                     /translation="MRYGLLTELLENRHSGVTSLFVRDWVRDIDIGIFEHEIGNPQPV
                     SIDLEVHISGADAPKRDEIDAVVDYDYMRAVVDRVIASKRYNLLETLASEVLDGCLMP
                     REVVGAAVTVTKLAVIEGNGRIGCTLTRIR"
     gene            complement(2089..2868)
                     /locus_tag="HA345_00175"
     CDS             complement(2089..2868)
                     /locus_tag="HA345_00175"
                     /inference="COORDINATES: protein motif:HMM:NF024950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HIH83801.1"
                     /translation="MDKGGVLVTGGSRRIGRVIALALADAGHCVAILTRSPSPEGAAV
                     VAEIEARGVKGVLIEGDLSNEDSLRGIFTRVTEFLGPMTGLVNCASLFEWDDINSVSY
                     KSILDHSSTNLAGPLILTSDLITYLKENSVGNGTGCVVNVLDQKLASPNGDHLSYTVS
                     KYALEGATRALSRSMAPIARINAVSPGHTLQSTEQTDRGFALAQSQSPLGYGPTPEDI
                     AQTVILYFSVPSLTGQVITVDSGEHMMNRSRDVVFETEGLE"
     gene            2983..>3181
                     /locus_tag="HA345_00180"
     CDS             2983..>3181
                     /locus_tag="HA345_00180"
                     /inference="COORDINATES: protein motif:HMM:NF028191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83802.1"
                     /translation="MAEAVEPIMGGCGGGVTSMTAKEKRRSLRKRLPPWFKTSLPTGE
                     EQAKFNATKKTIEGGGLHTVCE"
BASE COUNT          877 a          833 c          774 g          697 t
ORIGIN      
        1 gccatacaca agtgtagtcc tcccgtaacc aacaatctgc ccggctacga ggaggaacaa
       61 tgggccagcg attagtgtag aggcgaacaa aagagcagaa atgaggaaac ccgatgtttg
      121 tacctcacta gggagatcca tgactaccga gtcatcctcc acttttaccg aaccttgcat
      181 agaaggcgtc ctatgagggc gaggccagcg ggtcggatga cgggcaatct gttgtaaaac
      241 tgttaacccg tgctcatccc gctctacgat acgacccgtg tgttctatga ggcgagaatg
      301 accaagcctt gcgatttctt cagcaactga gagggcatca ctctcagaac caagggtaat
      361 gagatcgcga ggaccttctc gactttcaag gacgatgcgc caagccggca ctagcgtccg
      421 ttcgatacgc tgcgtccgga ttgcgagaat gtcacccgtc tcgtaacgcg cattggcatc
      481 accaattgaa attgtgaccg ctccgagatc ttccttaatc ctcattgtgg attggactga
      541 aatctcaaga acgccatctt cagcccgatt agatccgaaa gctcgccatg ccattacatg
      601 aattcagaat gtgcaagtat ttcatcggtg atgctttggc acccacatgg aggaggtttt
      661 cttcgtggcc gacatactgt cggttcaacg acttcaggca atcgctcagg atgaaattca
      721 aaaatggtcg aagggcatcg tgcaccccgc ttcagggtct agtgaaagtt ctgatgcatc
      781 atcaatagcc atcgaagaag cgcggcaaaa aatcgaatct ctactacctg gaggtaatgt
      841 ctggttcaca agtgggccag atgaagcagc aaactgggcg ataaagggga ttgctgcagc
      901 tcagcggcgc agaggaaaca aaatcatcgc atcgcctgat tctcacctca gcatcctcaa
      961 tgcaacacgt tcgattcaag gcgaggggga tgtggtcgcc attactggat ctgcgattaa
     1021 catcgagaca ggagtccttc tcgacgccca gaaatgggct cataacgcct cagaaacata
     1081 ccctcttgca cgccgtataa tcgatgcaag aggagccatt ggccgcatag aacttgagcc
     1141 cctaacactt gtttcagatg caataatctt ggactcagaa acttgcggag gaccggcagg
     1201 tgtaggcgca ctctggatac gaacaggtgt tcgaatcgag cctttaatcc acggctcagg
     1261 acaagagaag gggcggcgat caggaacagt acctatcggc ctagtatgtg cattcgctgc
     1321 tgcctgtatt gaagctgata tgagacggac tacaaatacg gaactatgga atcaacatca
     1381 ttcacaacta gaggaaaaaa tccgttcgat aaatggagag atccatggag catcagaggc
     1441 acgtgcccct ggcatcacat gcgccagtat ccccggagaa ttcgcagaga tacgcctcca
     1501 gcatctcgaa gaaagaggca ttattgcatc ccctgctagt ggttgctcct caaccgcagg
     1561 caaaccctcc catgtactaa catccatggg tatcgataca gatactgcca tgaggtcact
     1621 tagattcagc ctaccagtag acactagttc tagagatttg aatcgacttc tggaagcctt
     1681 acaaaactga taatcatctg attcgtgtaa gagtgcatcc gattcggcca ttgccctcaa
     1741 tgacagcgag tttcgtaact gtgaccgctg ctccaacaac ttcgcgcggc atcaagcatc
     1801 catcaagaac ttctgatgct agtgtctcaa gcaaattgta cctcttggaa gcgatgactc
     1861 gatccacgac tgccctcatg tagtcataat ctacgacagc atcaatttcg tccctctttg
     1921 gagcatctgc accagatatg tgcacctcta aatcaattga aaccggttga ggattaccaa
     1981 tctcatgctc gaatattcca atgtcgatat ccctgaccca atctcgaaca aaaagagagg
     2041 tcacacctga atggcgattt tcaagcaact cagttaggag gccgtatctc attccaaacc
     2101 ctccgtctca aagaccacat cgcgagaccg attcatcatg tgttcacctg aatctaccgt
     2161 gatgacttga ccagtcaaag aaggtactga gaaatacaat attactgttt gagcaatgtc
     2221 ctccggtgtt ggaccgtaac ccaacggtga ctgcgattgt gcaagagcaa aaccacgatc
     2281 ggtctgctct gtactctgca acgtgtgacc aggcgatacg gcattaattc gagcgattgg
     2341 agccattgat cgcgaaaggg cgcgagttgc gccttcaaga gcatatttcg acaccgtata
     2401 ggaaaggtga tctccattcg gcgaggcaag tttctgatcg agaacattca caacgcaccc
     2461 cgtgccattt cccacgctat tctccttgag ataggtgatg agatcggaag tgagtatcag
     2521 aggaccggca agattagttg aactgtgatc gaggatggac ttgtaactca cagaattgat
     2581 atcgtcccat tcgaacaaag atgcacagtt taccaggccg gtcatcgggc ccaaaaattc
     2641 cgtcacgcga gtgaaaatac ctcgaagact atcctcattc gagaggtcac cttcgatcaa
     2701 cacccccttc acaccacgcg cctctatctc tgcgactacg gcggcaccct ctggagaagg
     2761 agagcgagtt agaatggcga cgcaatggcc tgcgtcagca agtgcgagtg caatcacgcg
     2821 accgatgcgt ctagaaccac cagttacaag gacacctccc ttatccatac atccacggag
     2881 gcactcatgg gtttgagcgt gccgatgtaa ccataggtcc gctccgaacg gttaatcgga
     2941 tatggttgaa gagacgattc catggggccc acccgcctgc caatggcaga agctgtggag
     3001 cccatcatgg gaggctgtgg aggtggcgtg acctcgatga cagcgaaaga aaaacgcaga
     3061 tcactacgca aacgcctccc cccatggttc aagaccagcc tgcccactgg tgaggaacag
     3121 gccaaattca acgctacaaa gaaaacaatc gaaggcgggg gattgcacac agtctgtgaa
     3181 g
//
LOCUS       DUKB01000007           11255 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_188510, whole genome shotgun sequence.
ACCESSION   DUKB01000007 DUKB01000000
VERSION     DUKB01000007.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11255)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11255)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11255
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_188510"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..935
                     /locus_tag="HA345_00185"
     CDS             <1..935
                     /locus_tag="HA345_00185"
                     /inference="COORDINATES: protein motif:HMM:NF012694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83803.1"
                     /translation="KLLVQADIRVMPEVYKSTQLMSTIAVIFGCGALLALVFLPGAGL
                     IAIYESIQDVATVMPCQDWEFWHKNDLNPSLPGNGCPDYATQTFPLLWKVLVVGLLAL
                     IVPVMSNRYFGGEAERKRADRAERLEKFLPYASSYTAAMSAANATPVRIFRSLAKNGD
                     IYGDIAYDSSMIYRDMTLFGYDIITAVKLAVDRAASTWVTEFFQGMVGTLSSGGNLKL
                     YFLNRAEHYMRENRIRLTMFLETLAMFAETYIVVAVAMPLFLIVMLVIMFWVSGAGSQ
                     ISENMVYGIVMGLLPMIHIAYSLFVWLMSKENEM"
     gene            951..2486
                     /locus_tag="HA345_00190"
     CDS             951..2486
                     /locus_tag="HA345_00190"
                     /inference="COORDINATES: protein motif:HMM:NF012694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HIH83804.1"
                     /translation="MAKKNRKKKIKIRLELPKDDRSQTNFSIILAICMMIGVGCMGFW
                     ITNADLVFKPINQMPMFLNMACPDSFDANSPVPPTYSDNESCFLTQESPSTEIWTEEW
                     SKVGSPGGAGFFIVPGIDKQRLGTMPHPQQFANIECSAEADNNGVFTLSVVERYYDMT
                     TSVQDSAQIVANSDDCGLQDIPVEANKKYEIWVEIEPGQPSLRTFEFTVSVDAYDGIP
                     DNMNNRSLWIGPGFELGPFDIHPTIFVNFFGIGLLVAVFPPSIYKDAQARKIKAIEDK
                     FPDFLRDLAEYWKGGLSMVVSVRTLARSEYGALNDDIQKMSDQLSWGIPFGDVMRLFA
                     GRVNTPLVHRAVSLVDEANKAGGKISDILVTAANDSREIKFLEGERVRAIASYISVIW
                     VSYLVFMGVIVVLSKVFIPAIASSNSGGESESIGNMQINAVDPLFFLVVFFYGVSAQA
                     VGNGAMAGLMATGRLSNGMKHSGFMLILALFAFNFVAFTPDLIGVPMAEGLVHSIGRT
                     APG"
     gene            2491..2937
                     /locus_tag="HA345_00195"
     CDS             2491..2937
                     /locus_tag="HA345_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83805.1"
                     /translation="MKHLFRDDSAQVHMIEMITLFWLFFLAAAFVIQLQVPDTNAIAS
                     DASLRLAAEDAHLLSVAIVDEDGSSTLENHLEADRRDEACTLILEQLPQTVTGNCWLA
                     VDSGAMERAGDAEIPPSQTLSVMHLKDVDGHLWTIGVQVWHVGGGI"
     gene            2937..3365
                     /locus_tag="HA345_00200"
     CDS             2937..3365
                     /locus_tag="HA345_00200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83806.1"
                     /translation="MRRERSNDEAQMLLATGVVLILALLSMAIYSVKVVGMGEPYNAS
                     DDAVLQTAEETSEVWQTSIQHRFEDLNGIGTVEERCLDAANSVKADLMRHGEHRGVEI
                     ILVDLNATIDSDICTVVAEAGIADRNGRLLIDLHAEIDVS"
     gene            complement(3366..3974)
                     /locus_tag="HA345_00205"
     CDS             complement(3366..3974)
                     /locus_tag="HA345_00205"
                     /inference="COORDINATES: protein motif:HMM:NF018154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH83807.1"
                     /translation="MADEQMVVRTPRLVLIAGATGTGKSRLAHMVAHEMGFSRCVSTD
                     TIREVLRVGRSPNDSPELHRSSYSHGTTGDPVNDWLDACEPIRSGVSAVIDRARSQGV
                     DLVLEGVHLIPQSNWIREWRESGGRAIGVYVTADAEAQHRGFIVERESSSYRGSERYM
                     MAFERIRAIQRAMMERGRLAEWIRIDPLLHEDPLIRVRQNLI"
     gene            complement(4026..4451)
                     /locus_tag="HA345_00210"
     CDS             complement(4026..4451)
                     /locus_tag="HA345_00210"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013224.1,HMM:NF024804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HIH83808.1"
                     /translation="MVHLTENDRIILDALRKNSRATARAIAESVGLNQRTVSARITQL
                     EESGVIRQYTIRESGAGLSALIRIKVSPGAKEIGALGAEIRTWSGVDTVFEIAGEADL
                     IALVHVSDTISLRTLLDRIWESSSDQIASTITELVLEQY"
     gene            complement(4500..4958)
                     /locus_tag="HA345_00215"
     CDS             complement(4500..4958)
                     /locus_tag="HA345_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019176408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HIH83809.1"
                     /translation="MRRVTAIQNGTVIDHIPAGSSLSVLGMLGLLDSRRTPISLVMNV
                     PSKKLGRKDVIKVEDRELTQEELDRLAIIASNASVAIIRDFRVAEKRTVELGSELVNI
                     ARCSFSNCITANPMEPLPHRLVVRSAEPMELRCAYCGRIQEIGALINHLI"
     gene            complement(4970..5902)
                     /gene="pyrB"
                     /locus_tag="HA345_00220"
     CDS             complement(4970..5902)
                     /gene="pyrB"
                     /locus_tag="HA345_00220"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012964651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HIH83810.1"
                     /translation="MTSLITMDDLTNEEIISILDIAEQMLPIARGEAYTPILSGKVLA
                     NLFFEPSTRTRMSFEAAMKRLGGSVLNLGDVSTSSVVKGETLFDTMQMMDGYADIAVI
                     RHPRQGAAKYSSDAVEIPVINAGDGAGHHPTQTLLDLFTIRKCHGTLEGLQVALVGDL
                     RYGRTVHSLSGALARFGSSLTFISPSSLSMPREIVQDLRNSGVDIVETEDFLGSIESL
                     DVIYMTRIQKERFPDEEEYRKIAGVFCLTAKDLVNAKKNMIIMHPLPRVNEIAPDVDS
                     TPHAKYFEQAFYGVVARMALLCRLLEVDVQEAIE"
     gene            6016..7011
                     /locus_tag="HA345_00225"
     CDS             6016..7011
                     /locus_tag="HA345_00225"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012509.1,HMM:NF020133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GHMP kinase"
                     /protein_id="HIH83811.1"
                     /translation="MLISRTPVRASFCGGGTDLAAFYEQSPHGGAVTSMAMARYLYVT
                     VNPRFDEQIRVSYSNMELVNSLDEVQHGLVREAMKSTGVTHGVEITTIADIPSRGTGL
                     GSSSAVTVGLLNALSTLVGRPMNPVELAEEACRIEIDVLGQPIGKQDQFAAAVGGANT
                     IGFLPDGSVSIDPLELSESIVNRIESEFTLIFTGMTRSASSVLSAQKEKTGDRMTELE
                     RLREQAFEVRGAIERGDFEAVGGLLEASWQIKRTLVEGITGDNLDALHDRILSCGASG
                     AKLLGAGGGGFFLAHGESRVREALRQELDANHRILPLILDKQGSVIIHDDGKRWG"
     gene            7008..9797
                     /locus_tag="HA345_00230"
     CDS             7008..9797
                     /locus_tag="HA345_00230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83812.1"
                     /translation="MNPFRLHTLLVLFVLVLSSTPLHGAEVPETSGIEFRFIDSSGNP
                     YPVEDITIQLIDPWSGRVLSAVTNVQGTTYSIDWTSSESFRPEISTSDLHIERSEVIQ
                     PNGTNTIIVDVEILTEDQVNLTGVGQATVIRTLTNRTIGWQVNPIVDDSIHLPNASKG
                     WIEIRDGEQIQLTEWNGENEIDVMAIGNLRLMASNSYWNGSMLIRHSPSGWSEIIEIN
                     GTIDHLMPRISGGEWHLWRLDNGEIEAHSHIIDDALFEDIESWLDSTMDTRNLPSGSA
                     SLIFANSPLNPNTAIEADFSANHRFDSLVGHGSLPAITSGIGIQIDRFHGDWDGIVQG
                     AEFSSFSNMLHDLKWWNGSHVGCCILDDRTMLAYPPISPTHAWIEPSSPGVLDDGVSW
                     GWSESGQIGGESDTDVSRRLAVPFRGDARDGIDLGITLPDEWEMRQSPQSNHILANGN
                     QVTVQRSSMDVTGEVLIVIAENEAPEVSINGIGLSNNYARLGGPIEQNMTCIDSSPGD
                     VQMQWQIIGDGFTGAHNGANFSITFDSAEQSEGEDVLIQATCTDSHGNRTDLTHDLTL
                     DSTPPNWEIVMLEDHPSYWAQILHEIEFMDAVSINATSTIIVDIHANDTNGETTQIIL
                     TSNRSDGWNRMAGNRLYFAEMWPQGDHINGMHMTIEERHKERDPAVRWLKLEISDSVG
                     NTMVKEWSVTSLDLFGPVPRPSILVDGIPIGSTNTAKMESTIEIDMSESFDDLDPIDA
                     VIWSASINGILLFENASWEDAERFPINGLNRGRHTLVVTGTDRAGNIGSHSSIVEIHP
                     SGTFLPRIEDVMIVDGGVSGQPATVRIVIANMGADSQEVSVCMANSCDNGTLPAATID
                     SEGTLTLSLGFEDLPSGTQSIVVEWIKDGDIESIASAGPIVDPAWRETAKMIIWIMLI
                     AYTAGVLFDRRFGRP"
     gene            9837..>11255
                     /locus_tag="HA345_00235"
     CDS             9837..>11255
                     /locus_tag="HA345_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83813.1"
                     /translation="MEGEVDSKELRIQQALSAWRRPVDGIGLITTLALVALGAYLAFP
                     TLSGDAESNGFVPLFALLGCSLLVADLVDFGPNQRSRIGTISGMLGPVLIVAGLFHAI
                     ESQHQDGQFAGIGWMFSGAILMASNTIIFGQEARSEVIRYRAMTRLLGLGIASAWCIA
                     EIPEKEIAMYLVALLFAGFVFGFDLRLGKDDRTQRRAFKDRYETLELRLLEVRASGII
                     IDQAISLLSKANEVGWTDHDEGMHLLRQAEDDLERILSFSEDITVIEEDAATFVKEAE
                     EIAPLAERPMKALEQGRREVELGSLRDGEMLYRRAKNRAQDIIANWANAENAMHEAKK
                     TMEGLTGTDLDRMNTLLQAAQDAMDAEEPGDALTIALAIPTHVSNLGEAMEAASEAVQ
                     DAKDLLARTDGLDITLWEEMLNRAEEALDSGDGSLARGLADSIRREIEATEEAKASVQ
                     RSLRQRKTLRKRWVGWSDEENWE"
BASE COUNT         2993 a         2721 c         2741 g         2800 t
ORIGIN      
        1 ccaagttgct tgttcaagcg gacatacgag tcatgccaga ggtctacaag tcgactcaac
       61 tgatgagtac aattgcagtc atcttcggat gtggtgcact tctggcactt gtcttcctcc
      121 ccggtgctgg actaattgcc atctatgaat ccattcagga tgttgccaca gtcatgccat
      181 gtcaagactg ggaattctgg cacaagaacg atctcaaccc gtctcttcct ggaaatggat
      241 gtccggatta tgctacccag acctttccct tattgtggaa ggtgttggtt gtaggtcttc
      301 tcgcgctaat cgtccccgtg atgtccaacc gttacttcgg cggagaggct gaacgtaagc
      361 gtgcagatcg ggcagagcgg cttgagaaat tcttacccta cgcttcatct tataccgcag
      421 cgatgtccgc agcgaatgca acacctgtgc ggatatttag atcacttgca aaaaacggtg
      481 acatctatgg cgacatcgcc tacgactctt cgatgattta tcgtgacatg acactattcg
      541 gctacgatat catcacagca gtcaagctag ctgttgatcg ggccgcctct acttgggtca
      601 ctgaattctt ccaagggatg gttggtaccc tatcctctgg tggaaatctc aagttgtact
      661 tcctcaaccg tgcggagcac tacatgcggg aaaatcgcat acgattgaca atgtttcttg
      721 agacccttgc aatgttcgcg gagacataca ttgtggtcgc agttgcaatg cctctcttcc
      781 ttatcgtcat gctagtcatt atgttctggg tatccggagc aggatctcaa atttcagaga
      841 atatggtata tggtatcgta atggggctct tacccatgat ccacatcgca tattccctct
      901 ttgtatggct gatgtcaaaa gaaaacgaga tgtgaatggg agggaatacg gtggcaaaga
      961 agaaccgtaa gaagaagatt aagatcagac tggaactccc aaaagacgac cggtcccaga
     1021 ccaattttag catcatcctc gccatatgca tgatgattgg cgtgggttgt atgggatttt
     1081 ggattaccaa cgcggacctc gtgttcaaac ccataaatca gatgccgatg ttcctcaaca
     1141 tggcttgtcc agattccttc gatgcaaaca gcccagtgcc tccaacctat tcggacaacg
     1201 aatcctgctt ccttactcag gaatcaccct ctacggaaat ttggactgaa gaatggtcga
     1261 aggtaggatc acctggcggt gcaggtttct tcatagtccc aggtattgac aaacaacgac
     1321 tgggtacgat gcctcatccc caacagtttg ctaacataga atgttcagca gaagcagata
     1381 acaacggagt attcacactc tctgtcgttg aacggtacta tgacatgaca acatcggtac
     1441 aagatagtgc acagattgtc gctaactcgg atgattgtgg acttcaagat attcctgttg
     1501 aagccaacaa gaagtacgaa atttgggtag aaatagaacc tggtcaaccc tctcttagga
     1561 ccttcgagtt caccgtatct gtggatgcgt atgatggaat tccagataac atgaacaaca
     1621 gatcactttg gattggacct gggttcgaac ttggaccatt cgatattcac cccactatat
     1681 tcgtcaactt ctttggaatc ggccttttgg tcgcagtgtt ccccccttcc atctacaaag
     1741 atgcacaggc acgaaagatc aaggcaatcg aggataagtt tcccgacttc ctgcgtgatc
     1801 tcgcagaata ctggaaggga ggtctctcca tggtggtctc agttcgcaca ttggctcgtt
     1861 ccgaatatgg agcgttgaac gatgacatcc aaaagatgtc agatcaacta tcttggggaa
     1921 ttccctttgg tgacgtcatg aggttattcg caggacgagt gaatactcct cttgtccatc
     1981 gagctgtatc tctagtcgat gaggcaaaca aagccggtgg aaaaatctca gatattcttg
     2041 ttaccgcagc caatgattct cgagaaatta aattccttga aggtgagcgt gttcgtgcaa
     2101 tcgcctcgta tatttcggtc atatgggtat cttatctcgt attcatggga gttatcgttg
     2161 ttttgtcaaa ggtattcatc ccggcgattg cttcctccaa tagtgggggc gaatccgaaa
     2221 gtatagggaa catgcaaatt aacgctgtag acccactatt cttcctcgtg gtgttcttct
     2281 acggggtatc ggcacaagcc gtgggcaatg gtgcgatggc aggcctcatg gcaactggcc
     2341 gcctatcgaa cggaatgaaa cactctggct tcatgctgat tctagcccta ttcgccttca
     2401 acttcgtggc ctttaccccg gacctcatcg gagtaccgat ggcggaagga ctggtacact
     2461 ctattggtag gaccgctcca gggtgattgg atgaaacatt tgtttcgaga tgattccgct
     2521 caagtccata tgattgagat gattacacta ttctggttgt tctttcttgc cgccgccttc
     2581 gtaatccaac tccaggtacc tgataccaac gcaattgcat cggatgcatc tctccggctc
     2641 gccgccgaag atgcgcactt actatctgta gcgatagtcg atgaagacgg atcgtcaact
     2701 ctcgaaaatc atcttgaggc agaccgccgt gatgaggctt gtaccctgat acttgaacag
     2761 ttacctcaga ccgtgactgg taactgttgg ctagcagtgg actccggtgc tatggaacga
     2821 gcaggagatg ctgagattcc accatctcaa accttgtcag tgatgcatct gaaagacgta
     2881 gacggccact tgtggactat aggagtacag gtttggcatg ttggaggggg catatgatga
     2941 gaagagaacg ctctaatgat gaggcacaaa tgctcctagc tacaggagtg gttctcattc
     3001 ttgcactatt gtcgatggca atctacagcg tgaaggttgt cggtatggga gaaccctaca
     3061 atgcatccga tgatgcagta ctacaaactg ctgaagagac cagtgaggtc tggcaaacat
     3121 caattcagca tcgattcgag gacttgaacg gaattgggac agtggaagaa aggtgtctag
     3181 atgcagcaaa tagtgtaaag gcggatttga tgcgacatgg ggagcatcga ggtgtggaaa
     3241 tcattcttgt cgatcttaat gcaacgattg attcagatat ttgcaccgtc gtcgctgaag
     3301 caggaattgc tgatcgaaac gggcggcttc tcattgattt acatgcagaa atcgatgtat
     3361 cctaatcata tcagattctg acggacgcga attaatggat cctcgtggag aagaggatca
     3421 attcgaatcc attcagcaag gcgtccacgc tccatcatgg cacgctggat tgctcgaatg
     3481 cgttcaaagg ccatcatata cctctctgat ccacgataac tgctggactc acgttcaacg
     3541 ataaatccgc gatgttgtgc ctcagcatca gccgtgacat agaccccgat tgcacgcccc
     3601 ccactctcac gccattccct aatccaattg gactgaggga ttagatgtac accctcaaga
     3661 acaaggtcga caccttggga ccgagcacga tcaatgactg cagatacacc tgatcggatt
     3721 ggctcgcaag catctaacca gtcgttcaca gggtcacccg ttgtcccatg agagtaactg
     3781 gaacgatgaa gttcaggaga atcattggga gaacgcccga ctcgaagcac ctctcgaatc
     3841 gtgtccgtag atacacatcg actgaatccc atctcatgtg caaccatatg agcgagcctg
     3901 gacttccctg tacctgttgc tcctgcgatg aggacgagtc tcggcgtgcg aaccaccatc
     3961 tgctcatccg ccatggtctg aattcatact tcgacctcat gtttccttcg gtgaaggaca
     4021 ggggatcaat actgttccag aacgagttcc gtaatagtcg aagcaatctg atcagacgaa
     4081 gattcccaaa tacggtcaag aagagttcga agagatatcg tatcagagac atgaacaagg
     4141 gcaataagat cggcctcacc tgcaatttca aacactgtat caacgccaga ccaagtgcgt
     4201 atttccgcac ctagggcacc aatctccttt gcaccaggac tgactttgat tcgaattaat
     4261 gcggacaagc ctgccccact ctcacgtatc gtgtattgac ggatgactcc gctttcctcc
     4321 aactgtgtaa tccgtgcact aactgtgcgt tgattcaaac ccactgactc agcaatcgca
     4381 cgagctgttg cccgactatt ctttcgtaaa gcatcgagta tgatgcgatc attctctgtc
     4441 agatggacca taggtaccgc accgtaagac ctgttctaat ttctccgcaa aaaagggcat
     4501 caaatcaaat gattaatgag agcaccgatc tcctgaatcc ttccacaata agcacatctc
     4561 aattccatag gttcagcgct tcgcacaacc aagcggtgtg gaagtggttc cattggattc
     4621 gctgtaatac aatttgagaa agaacaacga gcgatattta ctaactccga accaagttct
     4681 acggtcctct tctccgcaac cctgaagtct ctgatgatag cgactgaggc atttgaagca
     4741 ataatcgcga ggcgatcaag ttcctcctga gtcaattcac gatcctcgac tttaatcacg
     4801 tccttgcgtc ctaacttctt gcttggaaca ttcatgacaa gggagatagg ggtgcgtcga
     4861 gaatcaagga gccccaacat accaagaaca ctcaatgatg atcctgctgg gatatgatcg
     4921 atgactgtcc cgttctgaat cgcagttacc cttctcatac cttgctcgct cattcaatcg
     4981 cctcctgaac atctacttcg agaagacgac agagcaatgc cattcgcgct acgacgccgt
     5041 agaatgcctg ttcaaagtac ttggcatgag gagttgaatc aacatctggg gcaatttcgt
     5101 tgactcgagg gaggggatgc atgatgatca tgttcttctt ggcgtttaca aggtccttag
     5161 cagtcaagca aaagacaccg gcaatcttcc gatactcctc ttcatcaggg aagcgctcct
     5221 tctgaatacg agtcatgtaa atgacatcca atgattcaat cgacccgagg aagtcctctg
     5281 tctcaacaat atctacaccc gagttacgga gatcctgcac aatctctcta ggcatcgaaa
     5341 gagacgaagg agaaatgaaa gtgagcgaac tcccgaaacg ggcaagagct cctgaaagac
     5401 tgtgcactgt gcggccgtaa cgaaggtcgc ccacaagagc aacttggaga ccttcgagtg
     5461 taccatgaca tttgcggatg gtgaataagt ccaacaaagt ctgagtggga tgatgacctg
     5521 caccatctcc tgcattgatt acagggattt caacagcatc tgaggaatac ttggcagcgc
     5581 cctgacgagg atgcctaatt acagcaatat ccgcatatcc atccatcatc tgcatcgtat
     5641 cgaacaaggt ctcacccttg acaacggacg aagttgaaac atctccaaga ttcagaacag
     5701 agccaccgag ccgcttcata gccgcctcaa aggacatcct agttcgagta gatggttcga
     5761 aaaagaggtt ggccaatacc ttaccagaaa ggattggagt atatgcctca ccacgtgcaa
     5821 tcggtaacat ctgttccgct atatctagta tcgagatgat ctcttcgttc gtcaggtcat
     5881 ccatcgtaat gagactcgtc atggctctcc ccttccctaa ccgggatgaa accgaccata
     5941 ttccttcccg tgttctgaac ccccagatag gcgcgcttcc gtggacttca tgtgaagggg
     6001 ttctgtcgga gaaccatgct catcagccga accccggtga gagcgtcgtt ctgtggagga
     6061 ggtacagatc tcgccgcgtt ctacgaacaa agcccccacg gaggagcagt cacctccatg
     6121 gcaatggcac gctacctcta tgtaaccgtt aatccaagat tcgacgaaca gatccgtgtt
     6181 tcatactcga acatggaact tgtaaattcg ttagatgagg tccaacatgg tctcgtgcgt
     6241 gaagcgatga aatccacagg cgtgactcat ggagtggaga ttactaccat tgcagacata
     6301 ccctcccgcg gaacagggct tgggtcctcc tccgcggtta ccgtaggcct tctcaatgcc
     6361 ctttctaccc tagtgggccg tccaatgaat cctgttgaat tggccgaaga ggcctgtcga
     6421 atcgaaatcg atgtgcttgg acagcccata ggtaagcagg atcagttcgc tgctgcagta
     6481 ggtggagcca acacaattgg ctttctccct gatggaagcg ttagtattga tccattagag
     6541 ttgtctgaat cgattgttaa caggattgag tccgaattta cccttatctt cacaggcatg
     6601 acccgaagtg catcctcggt actttctgca cagaaagaaa agactgggga tcgtatgacg
     6661 gaacttgaac gcctccgaga acaagcattt gaggtcagag gagccatcga gcgaggtgat
     6721 ttcgaagctg taggaggatt acttgaagca tcatggcaga ttaaacggac gctagtcgag
     6781 ggtattacag gagacaatct agacgccctc catgaccgga ttctcagttg tggggcctca
     6841 ggagcgaaac tgttgggagc tggaggaggt ggattcttcc tcgctcatgg agaatcaaga
     6901 gttcgcgaag cactgcgaca agaactcgat gcgaatcacc gcatcctccc cttgattctt
     6961 gataaacagg gcagcgtcat cattcatgac gatgggaaaa gatgggggtg aatccctttc
     7021 gcttacacac actccttgtc ctcttcgtat tggttctctc aagtactcct cttcatggag
     7081 cagaggtgcc tgaaacctca gggattgagt ttagattcat tgattcatca ggaaatcctt
     7141 accctgtaga agatataacg attcaactca tcgacccatg gtctggaaga gttctatcag
     7201 cagtaaccaa tgtacagggt acaacatatt ccattgattg gacatcatca gagtcctttc
     7261 gccctgagat atctactagt gatttacaca ttgagcgatc cgaggtcatc caacccaacg
     7321 gaacaaatac catcatcgta gacgtcgaaa tcctcactga agatcaggtt aacttgactg
     7381 gagtcgggca ggcaacagtg attcgcaccc tcacaaatcg gaccattggg tggcaagtaa
     7441 atccgattgt tgacgattca attcatctcc cgaatgcttc gaaaggttgg atcgaaatac
     7501 gtgatggaga acagattcag ctaactgaat ggaatggaga aaacgagatt gacgtgatgg
     7561 caatcggcaa tctccgctta atggctagta attcgtattg gaacggttcc atgctgattc
     7621 ggcattctcc cagtggttgg tctgagatta tcgagataaa tggaaccata gaccacctta
     7681 tgccgagaat aagtggtggt gaatggcacc tctggcgact cgataatgga gaaatcgaag
     7741 ctcattccca tataatcgat gatgcactct tcgaagacat tgaatcatgg ctagattcca
     7801 ccatggacac acgtaaccta ccgtcaggat ctgcatcact catcttcgct aattccccac
     7861 tcaatccgaa tacagctatc gaggccgact tctctgcaaa tcatcgattt gattcccttg
     7921 ttggccacgg gtctctccct gccatcacct ctggaattgg aatccaaatt gatcgatttc
     7981 acggtgattg ggacggtatt gtccagggcg ctgagttctc ttcattcagt aacatgctcc
     8041 atgatttgaa atggtggaat gggagtcatg tgggctgttg tatactagat gatagaacga
     8101 tgcttgcata tcctccaata tctcctacgc atgcttggat tgagccttca tcaccagggg
     8161 ttctcgacga tggagtcagc tgggggtggt cagaatccgg ccaaattggg ggagaaagcg
     8221 atactgatgt gagtagaaga ttggctgtac cgttccgagg cgatgctcgc gatggtatcg
     8281 acttgggcat aactctaccc gatgaatggg aaatgcgaca aagcccacaa tcgaatcata
     8341 ttttggcaaa tgggaatcaa gtcacagtcc aacgctcctc gatggatgta actggagagg
     8401 tcctcattgt tatcgcagag aatgaggcac cagaggtttc aatcaacggt atcgggttat
     8461 cgaacaacta tgctcgcctt ggaggaccca tcgagcagaa tatgacttgt atcgattcaa
     8521 gtccaggcga cgtccagatg caatggcaga ttattggaga cggttttact ggtgctcaca
     8581 acggagcaaa cttctccatt acctttgatt ctgcagagca atcggaagga gaagacgtgc
     8641 taatccaagc tacatgtacc gattcccatg gtaatcgaac cgatcttact catgacctaa
     8701 ccctcgattc cactccacct aattgggaga ttgtaatgct cgaagatcat ccatcctact
     8761 gggcacaaat tctgcacgaa atcgaattta tggatgcagt atcgattaat gctacgagca
     8821 ccatcatcgt cgacatccac gcgaacgata caaatgggga aacaacccaa atcatcctga
     8881 cctcaaaccg aagcgacgga tggaatcgga tggctggaaa tcgcctctac ttcgctgaga
     8941 tgtggccaca gggcgatcat atcaacggca tgcacatgac gattgaagaa cgtcataaag
     9001 agcgggaccc tgctgttcga tggttaaagc tggagatttc tgactcagtg gggaatacca
     9061 tggtgaagga atggtctgta acttccctcg atctctttgg tccggttccg agaccttcga
     9121 ttctcgttga tggaatacca ataggctcga caaacactgc caaaatggag tcgacaatcg
     9181 agattgatat gtctgaatca ttcgatgact tggaccctat tgatgccgta atttggtccg
     9241 cttcaatcaa tggaatactt ctctttgaga acgcatcatg ggaggatgcg gagagattcc
     9301 caataaatgg gctcaatcgc ggaagacata cccttgtcgt aactggtacg gaccgggcgg
     9361 gcaacatcgg aagtcattct tccatcgtgg aaatccatcc ttccggtacg ttcctaccga
     9421 gaattgagga tgtaatgatt gtcgatggag gcgtgagtgg acaacccgcg actgtccgga
     9481 ttgttattgc gaacatgggt gcagattctc aggaggtaag cgtctgcatg gcaaattcat
     9541 gtgataatgg cacccttcca gctgcaacaa tcgattcaga aggtaccctt acacttagcc
     9601 ttggattcga ggacctccct agtggaacac agagtattgt tgttgaatgg atcaaagatg
     9661 gagatatcga gagtatagcc agcgcaggtc ccatagtgga cccagcttgg cgagaaacgg
     9721 ctaagatgat catttggatt atgctaatcg cgtacactgc aggtgtcctc tttgatcgac
     9781 gttttggacg cccatgaatc cggtcgattc atggaggata acgcatccct gaattcatgg
     9841 agggagaggt ggactccaag gagttgcgta ttcagcaagc tctctctgct tggcgacgac
     9901 ccgtagatgg catcggattg attaccacac ttgcattagt tgctctcggt gcatacctag
     9961 cctttccaac actatcaggg gatgctgagt ccaatggttt cgtaccccta ttcgctcttc
    10021 taggatgctc tctcctcgtt gcagatttag ttgattttgg acctaaccag agatctcgaa
    10081 ttggcactat aagcggtatg cttggccctg tcctcatagt tgcaggattg tttcatgcaa
    10141 tcgaatccca acaccaagat ggccaatttg ctggcatagg atggatgttt tccggggcaa
    10201 tcctgatggc ttcaaacacg ataattttcg gacaagaggc tcgatccgaa gttatccgat
    10261 atcgagccat gacacgatta ctcggactag gtatcgcatc tgcatggtgt atcgctgaaa
    10321 ttcctgagaa agaaatcgcg atgtatctag ttgccctgtt gttcgctggt ttcgtattcg
    10381 gcttcgatct ccgacttggc aaggatgacc gaacacaaag acgcgccttc aaagatagat
    10441 acgagaccct tgaacttcgt ctcctcgagg tgcgagcttc cggtatcatc atcgatcagg
    10501 caatatctct tctctccaag gcaaacgaag tcggttggac cgatcacgat gaggggatgc
    10561 atcttctccg acaagcggaa gatgaccttg aacgcatcct gagtttctcc gaagacataa
    10621 cggtaattga ggaggacgcc gcaacattcg tcaaggaagc tgaagaaatc gcacctctcg
    10681 ctgaacgacc tatgaaggcc ctagaacaag ggcgaagaga ggttgaactt ggtagtctac
    10741 gcgacggaga gatgctgtat cggcgcgcaa aaaatcgagc gcaagacatc atcgcaaact
    10801 gggcaaatgc agagaatgca atgcatgaag caaaaaaaac catggaaggg ttgactggaa
    10861 ccgatttgga tcggatgaat acgcttctac aagcggcaca ggatgcgatg gatgcggaag
    10921 aaccaggaga tgcattgact atcgcactgg ctatccctac acatgttagc aatctcggtg
    10981 aagccatgga agcagcctct gaagcggtcc aagacgcaaa agacctgctc gcacggactg
    11041 atggtctcga tatcacgctc tgggaggaaa tgctcaatcg tgcagaagaa gcactagatt
    11101 caggtgatgg ttctcttgca cgaggactgg cagattctat ccggagggag attgaggcta
    11161 ctgaggaagc taaggcgagt gtccaacgat cactacggca acgcaaaacc ttacgcaagc
    11221 gatgggtcgg ttggtccgat gaagaaaatt gggaa
//
LOCUS       DUKB01000008            3635 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_213487, whole genome shotgun sequence.
ACCESSION   DUKB01000008 DUKB01000000
VERSION     DUKB01000008.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3635)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3635)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_213487"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2214)
                     /locus_tag="HA345_00240"
     CDS             complement(<1..2214)
                     /locus_tag="HA345_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83814.1"
                     /translation="MVPPGPPRGPPKKPPKGPPTSQEKPEIEEPDSNDGGASGSPKSS
                     PSGPPKGPPRSSPTTPPLTPPSQGPPTKGPPSGPPASGGPPSGPPSRPPTRGPPSSGP
                     PVTAPPSNAFEERDEVESDPEEEESNSLQEDEVESEPEEEEDEGAFEEDSEDEEDPAA
                     DSEVNDEEDMTQGSPMIIDRFGTDERKPMEITVEALGAPPNRVPLSEVDPDEAPPPVV
                     AQPREVLAPAGSVYDDLPKTDRSGHIIPFALWPRTAVRSSASNHHLLLDMMDDLLTLL
                     ENNEDTFPSFDLDGQTLLIEDYLRSRPENHNRVAALIESERLNIGPWYNPPAQFLSGS
                     ESLIRNLVRGQSDIKALGGKIGATPMPRSSSQISQLPALLSGVGSDEIIFSGGAGPWI
                     QDARGVFKWTSPGNHASVLAIKQVPNGRPLAGWGFEKRMTDSKDSHEIDLHSGTKRIE
                     DICNIHLEKYGWLPPMMGFGNSTRYGMAQTSLPRLIAESNNVMKGEVHFEHSTFTGFA
                     KDIRKWVGRKTLYAYDGEMRHGWDHSLHSGAISARMYLKRMNDHTVRLLTHGLEPLCA
                     ISWFHGGRNRNDRLRAAWDIVLRNHGSNELGGLGPDSVHMDMEDDFRHAQETIGMVME
                     DVRIELADAMNLHHIDRDAVPLLINNPLGVEWSGMLPVDLAVPAYRSWLDSGNPVHLE
                     FSKAPRDAELISDIVQVAPEPDTHLHRDSHVDLELPRIRGRVQVYRLPPGVHVLHA"
     gene            complement(2277..>3635)
                     /locus_tag="HA345_00245"
     CDS             complement(2277..>3635)
                     /locus_tag="HA345_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83815.1"
                     /translation="RATPFLIGAGMGLALMLLVLCDTHVAKTLEGMFRLLRGDRRTPT
                     DPVTGSFLTVFFCIALLLSAPNIIAMSGFAPDPPEPIRYSFTQDAPLFDVETTSFKGE
                     IPEEHVGWFTQNLEERNWMVHIHHPITVGTTSEGIALPVGVLLHGLGGYDPSVMLDTV
                     QSIAGRGVIVILVEYPNNARPENIPNDRVITYQEGGSDAVEHIPRFDHVKANLDLAWA
                     QLNDTSSELRNDVQKTIGENTTIDPSRLWIYGHSGGAGMLPWILTNLLEDGWGSEVLI
                     IDMEASWLGSNADTHYGNLSAIPDHTIAHIVEYERDLSVHPCIGRFHQERISTRDGTA
                     EPIPAVLYLFVQTDEHGFPVVMTSHYTPASQLHEHSADLFLYPRLEAQAIHLFAHAEG
                     ENDRVNDSRAYLEGLDGRLADLGKWSDGNTVKPILLRDDALNEGLPDGLDCIQYRVSH
                     KE"
BASE COUNT          837 a          899 c          926 g          973 t
ORIGIN      
        1 tgcatgtagg acatggaccc ccggtggtag ccggtacacc tggacacggc cgcgaattcg
       61 aggtaattca agatctacat gactatcgcg atggagatgg gtgtccggtt caggtgcaac
      121 ctgcacgatg tcgctaatca gttcagcatc tctaggcgcc ttggagaact caagatgaac
      181 gggatttcca ctatctagcc aactacggta tgccggaaca gcgagatcta cagggagcat
      241 cccggaccat tcaacaccta gtggattgtt gatcagaagt ggtacagcat ctcgatcaat
      301 atggtgaaga ttcattgcat ctgcgagttc tattcgcaca tcttccatca ccattccaat
      361 agtttcctgt gcatgccgga agtcatcttc catatccatg tgaactgagt ctgggccaag
      421 ccctcccaat tcattggaac catggtttct caggacaata tcccatgcag ctctgagccg
      481 gtcgtttcgg ttgcgtcctc catggaacca acttatggcg cagagaggtt cgagaccatg
      541 tgttagaagg cgaaccgtgt ggtcattcat tcgtttgaga tacattcgtg cggaaattgc
      601 tccactatgc aaagagtgat cccagccatg ccgcatctct ccatcgtagg catagagggt
      661 cttgcgccca acccactttc gaatgtcctt tgcgaatcct gtgaaggtgg agtgttcaaa
      721 atggacctct cctttcatca cgttgtttga ttcagcaata agtcgaggca gactcgtctg
      781 agccattcca taccgagttg aattgccaaa gcccatcata gggggtagcc acccatattt
      841 ctctaagtgg atattacaaa tgtcttcaat ccgctttgtc cctgaatgga gatcgatttc
      901 gtgactatct ttcgagtccg tcattcgctt ttcgaatccc caccctgcaa gaggtcgacc
      961 gtttggtacc tgtttgattg caagtacaga ggcgtggtta cctggcgaag tccacttgaa
     1021 tacgcctcga gcgtcctgga tccacggtcc tgctcctccg gaaaaaatga tttcatccga
     1081 ccctactcca ctcaaaagtg caggcaattg gctaatttga gaggatgatc gaggcatcgg
     1141 cgtcgcacca atcttgccgc ctaatgcctt gatgtcgctt tgacctcgca cgagattacg
     1201 gatcagagat tcgctacctg agaggaactg tgccgggggg ttgtaccatg gtccgatgtt
     1261 cagtcgctct gattcgatga gtgcggcaac tcggttgtgg ttctcaggtc tagaacggag
     1321 gtaatcctca atgagtaatg tttgtccatc aagatcgaaa cttgggaatg tgtcttcgtt
     1381 attttccaag agagtgagga gatcatccat catatcaagc agaagatggt gatttgatgc
     1441 agatgatctg actgcggttc gtggccatag ggcaaatggg atgatgtgtc cacttcggtc
     1501 agtctttggt aggtcatcat agaccgaacc agcgggagcc agaacttcac gaggttgagc
     1561 aactactgga gggggggctt cgtctggatc tacttcagaa agtggaactc gattgggggg
     1621 tgcgccgagt gcctcgactg taatctccat cggtttccgt tcatcggttc cgaaccgatc
     1681 gataatcatt ggactacctt gggtcatatc ttcttcatca ttcacttcag aatccgccgc
     1741 agggtcctcc tcatcttccg aatcctcttc gaaagctccc tcatcctcct cctcttcagg
     1801 ctcagattca acttcatctt cttgcaaact gttggattct tcctcttcag gatccgattc
     1861 aacttcatcc ctctcttcga aggcgtttga cggtggcgct gttaccggag gtccgctgga
     1921 gggcggtcct cgtgtggggg gtctactggg tgggcccgaa ggagggccgc cacttgcagg
     1981 aggtccactg ggcgggcctt ttgttggagg cccttgggat ggcggcgtca gaggtggagt
     2041 agtaggtgaa ctacgtggcg gaccctttgg aggtccggat ggactgcttt ttggagagcc
     2101 ggatgcccct ccgtcgttag aatcgggctc ctcaatctcg ggtttttcct gagatgtagg
     2161 tggacccttt ggaggcttct tcgggggtcc acgtggaggc ccggggggta ccatggcggt
     2221 caatgatggc tgaagataat gaaactgccc cgtcgaaact gggattcccc catgcatcat
     2281 tctttgtgag ataccctgta ttggatgcaa tctaatccat ctggaagccc ttcattcaat
     2341 gcgtcatccc gtaacaaaat cggcttgaca gtatttccgt ctgaccattt tccaagatcg
     2401 gctaatctcc catcgagacc ttcgagatat gccctggaat cgtttaccct atcgttttcg
     2461 ccttctgcgt gggcaaaaag gtgaatggcc tgcgcctcaa gcctcgggta cagaaataaa
     2521 tcagcagaat gttcgtgtag ttgacttgca ggagtgtaat gacttgtcat taccaccggg
     2581 aatccatgtt cgtctgtttg gacaaataga tacaatactg ctgggattgg ctctgcagtt
     2641 ccatcccttg tagaaatccg ttcttgatgg aatcttccaa tacaagggtg gacacttagg
     2701 tcccgttcat attctacgat atgcgctatt gtatgatctg ggatggctga aagatttcca
     2761 taatgagtat ctgcattcga tcctaaccat gaagcttcca tatcgataat caacacttca
     2821 gagccccatc catcttccag gaggtttgta agtatccacg gtagcattcc tgctcctccg
     2881 ctatggccgt agatccacag tcgacttggg tcaatcgtag tattttcgcc aatcgttttc
     2941 tgaacatcgt tccgaagctc cgatgaagtg tcattgagtt gagcccacgc caagtcaagg
     3001 ttggctttca catggtcgaa acgaggaata tgctctacag catcgcttcc tccttcttgg
     3061 taagttatca cgcggtcatt tgggatgttc tcaggtcgtg cattgtttgg atactcaacg
     3121 aggataacta tcactccgcg gccagcaata ctctgaacgg tatctagcat aactgaaggg
     3181 tcgtatcctc caaggccatg caaaagaacg ccaactggta acgctatacc ttcactcgta
     3241 gttccaacgg taattggatg atggatgtga accatccagt ttcgttcctc aagattttga
     3301 gtaaaccatc ctacgtgttc ctcagggatt tctcctttga aggaggttgt ctctacatcg
     3361 aacagggggg catcttgagt aaaagagtac cgaataggtt caggggggtc aggtgcaaat
     3421 ccactcatgg caatgatgtt cggggcagaa agcagtaggg caatgcagaa gaatacagtg
     3481 aggaaactcc cagtcacagg gtcagtgggg gttctccgat cacctcgaag aagccgaaac
     3541 atgccttcga gtgtttttgc aacatgtgtg tcacagagta cgagtagcat tagtgccagt
     3601 cccatccctg ctccgattag gaaaggagtt gcacg
//
LOCUS       DUKB01000009           14342 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_153272, whole genome shotgun sequence.
ACCESSION   DUKB01000009 DUKB01000000
VERSION     DUKB01000009.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 14342)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 14342)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14342
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_153272"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..159
                     /locus_tag="HA345_00250"
     CDS             <1..159
                     /locus_tag="HA345_00250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83816.1"
                     /translation="PDSEGRSNGRTGSDIERILAFHEIGRDDPVEYIEDWKSVLRHAL
                     NVQAEHGE"
     gene            161..>367
                     /locus_tag="HA345_00255"
     CDS             161..>367
                     /locus_tag="HA345_00255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HIH83817.1"
                     /translation="MSGKPRLDNERDAEWRNRLSRLAYKVTRQGATERPFTGDLYTED
                     RDGNYHCVCCGHLLFTSEMKYDSGC"
     assembly_gap    368..677
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <678..908
                     /locus_tag="HA345_00260"
     CDS             <678..908
                     /locus_tag="HA345_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008987622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HIH83818.1"
                     /translation="EMKYDSGCGWPSFHTEHPDAGIVRLEDDSHGMIRVEVRCQSCDA
                     HLGHVFNDGPRKNGGERYCINSVCLTFAESGE"
     gene            908..1360
                     /locus_tag="HA345_00265"
     CDS             908..1360
                     /locus_tag="HA345_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019939616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HIH83819.1"
                     /translation="MVTSIRRWVETDTGHRVPNHKSKCRHLHGHRYRWEAEIEGDVVT
                     DSGVSDEGMLMDFGDISAILTREIHDIVDHAFVVYTGDDDAIQALQAMGPSHRTVIVD
                     FIPTAENLARWAFERVEPLIQSSYGNRLRLVAMHVRETPKSWASWRSN"
     gene            1414..4797
                     /locus_tag="HA345_00270"
     CDS             1414..4797
                     /locus_tag="HA345_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83820.1"
                     /translation="MSTKVVPKALLLTLLMFVSVLAGCVGTDGELNSTDIFDLVDADG
                     DGILDNIDDCPSTAADREVNATGCEKGADDDELPPPTEKAPTIHIGTDGDQTITCDRD
                     KDGVNVPDMVLLSGLIDNYDTSMLDPYPNPSAELDFWHDQIPGYIGNLPGSEYDTPRV
                     GQIVMHTFQLPYSLTGGTITDATLEMRLNYQDDGLPTAVGVTPSDTIMLRFEDTTNPA
                     WSMNIDLTATSPTAPWLDAIYFMHLDTLPLAGTTAAQGAAGNTNMIPSMNSAELLDIV
                     VYDTQMVDYFELSLCVTPENPPTTHNNITIGKNYDCENRVNPDPDAAPFTTYNHYVMT
                     AAVNDIFASAPPSETVSPSAALSAHHNQQNPGFTLAMDYDDMNPGAHLLETFDWTTYV
                     QNQISSNNLASHQLVDASLHSQMRGRSVESSTDDVFVLSHITNPVSTMSTPYSWWANI
                     GTSSMNPVGSWGTHYTMYLSQMPASGGSLDMLNMVSGNLDMIPNMDTSKSLDVHIYDD
                     QAVDYLELHLCFEEIMNPPPPPIEWDTGGSYSCDTNSNSTYQTSHTAGMQDGYTQSMI
                     DPLTNPSQSLMNWGSALMFSSTQGVPSNPITQFVEFDEGVVHDDGILAHTFTNLPSAS
                     SQGGMMITDAKLVVEFKHGLSTNYADDLITLRFEDPTYAVTPWTAKIANPVTPNPTGY
                     VAVLHLDELPTTGTTSLQAMAAAVASGTTTGGNVHLLSPMNALSILDVTIQDGVIVDY
                     MQLTVCAEDITLGDDGFDGNCTTGVNTIEVYTAGFQDNFGPMIDPSISPSQAQHDYMK
                     WSRSNCPNCNTVTQQQNSHLLADFDGQQGVPTYNGLGNSNQGQDNRWYMHKFTGLPTD
                     ILQANLEIGMKDTQSTVDTDSLILSWLETDANGNWVEQSPNGVVPPEIWSNPSGQFSN
                     QLVNYQFTTLTAQTTLPGYVLNLDLGNLRVSGSQFIDGPSMVGNSNPPLSLIGAINAK
                     GSMEVLVQDDTMVDFMRLTLCRDKEADPDADGDGIPDSVEGFTNDTDGDGTPDYLDID
                     SDGDNIHDSTEWFDQSGAPGADTDGDGTPDYQDTDSDDDGIIDDVESVVDIDSDGDGN
                     WRDEDSDDDNYLDENEWTGDPSATPPVSSTDPYDPNSHP"
     gene            complement(4812..5597)
                     /locus_tag="HA345_00275"
     CDS             complement(4812..5597)
                     /locus_tag="HA345_00275"
                     /inference="COORDINATES: protein motif:HMM:NF012797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HIH83821.1"
                     /translation="MGNRLDVDLPEYPLEIVFVLVRPEFPGNIGAVCRGMLNFGFDKL
                     RVIGHDGNWEEETRKRAKHAQSVLDNAGTYDDWESCMEDVSLVIGTSGKRELGAKIQF
                     RHFLTPSDLIENLKGLSGRVAIVFGPEGIGLLQDQLRLCDLLLTIPTWEGYPILNLSH
                     AITVVAYSMHQDVDLESEDERSIMDPILRRTLRESAARVADSLPIHDSKKRGAREQLI
                     RTLMRSGPDQFEAHRLLGILNDAAEALEAAQSALRLNDETPEE"
     gene            complement(5609..5800)
                     /locus_tag="HA345_00280"
     CDS             complement(5609..5800)
                     /locus_tag="HA345_00280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008083137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17e"
                     /protein_id="HIH83822.1"
                     /translation="MGNIRPSFIKSRALLLLEMYPDKFNSDFDNNKVLVDEYTDVYNK
                     RMRNWIAGYITRYVQRRRD"
     gene            complement(5800..6081)
                     /locus_tag="HA345_00285"
     CDS             complement(5800..6081)
                     /locus_tag="HA345_00285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008085423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31e"
                     /protein_id="HIH83823.1"
                     /translation="MADVRRMTIPLRGAWKVSRNHRANRAIEEVKRHVVRHMKVTEQE
                     RIWIDESVNHTIWARGMQKPPRKIQVIVTREEGFPIEIKMDDEDEEGEA"
     gene            complement(6088..6243)
                     /locus_tag="HA345_00290"
     CDS             complement(6088..6243)
                     /locus_tag="HA345_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011011493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L39e"
                     /protein_id="HIH83824.1"
                     /translation="MSSRKTFGKKNRLNKVTKTNRRVPVWVILRTNRKVQSHPKRHNW
                     RRSKLQR"
     gene            complement(6254..6724)
                     /locus_tag="HA345_00295"
     CDS             complement(6254..6724)
                     /locus_tag="HA345_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015504683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19e"
                     /protein_id="HIH83825.1"
                     /translation="MSSFRDVPAGDLIEGVKALLESNDSIKAPEWAEIVKTGTHREMP
                     PVQPDWWSRRAASILRKVALHGPIGTNHLAQMYGGARNRGVRPNRAVTGSRNVVRTLL
                     QQLDDSGYTVIKKNLAGTKELGRIVTPAGQSLLDQVSKEIRPSAEEAAPGLGKY"
     gene            6858..7676
                     /locus_tag="HA345_00300"
     CDS             6858..7676
                     /locus_tag="HA345_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83826.1"
                     /translation="MRRALAQNPNMLRTIVGLGMTLILILSYAVYSATLDSGYYLAKT
                     SNDARDVMVVDDPINGSYTFSTEDAISWINVTIDNAPFGSIMEVTAVGGVWWYHPNLG
                     IEMDDNVPFQCFTPDTQDYEGIAENCESSAQHSSNIEDGTASMRGILTSDLPLSGTWA
                     ILSDNLTSASLEVNRTLEDAQLNRTWTIRILDDTGSPMNSTGTGVQVGTVHHDLISVE
                     QFTIDPITELIWSMTALVGCFGVTLILPVTLYLAALAKTKKAEAELSSTSDSEE"
     gene            7715..11299
                     /locus_tag="HA345_00305"
     CDS             7715..11299
                     /locus_tag="HA345_00305"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019325.1,HMM:NF022100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83827.1"
                     /translation="MRHSRSRTALALVALFLMLPLVPLAEAVSPKATVDVKPLTFTSQ
                     YVSSADASDYNTLSRTTTLARAPHLWIVDGMVDTQMRMVVEIENIGTSSASGVNVEIV
                     VLHDEYIDFELHNTSVTTSVSAGATATVNAVWTPKYSGNHTVRITTNHPLDANPQNDE
                     GFATTTIGAVYERCESNTAWSRTSNWLLDSSNALNGASSCRVGGVSSSNYGNMWTETL
                     RSPQLDFSDVHPNPTRGFGLGFFYTGNVATGDSMQVSVSSGSNKADLIPNGGLNGLVD
                     GQPTSWLIQLSTVNSVSVPWLYIPPTALGPQTQIEFKFTSDASGTEVGYWVEDIVMFY
                     DQKADASEFGLDASGSPSGTSNRGEWSDMSFTVRNTGNLTDRFTLEALGLPAGWDHRF
                     THSTGSGVLPGTEIQIDSGEVRTFKLQTKPPANAPTGSIQGTILVQSAEESTVQDSIT
                     FNAGVAPEYTSQWVEVSNSPRCPPGSICDYRVELLNSGDAGDTYTLTVDDVSMPQGWS
                     VDFDSSQDTSLVLPAGGNGTVDLTVTIPSTASPGETGVVALKAQSGADTSSITVHQLT
                     IEASMVSDLRIIPQWGNMPTHIPPGSSHLLEWNVVNQAERLDEVRFNWSIEGAQTWQV
                     SLSGPESASISGGESRVMRILLEAPSDGHAQDPSPIITPIVTSTLSGDVIQGSPTSGP
                     RIGQIHDLSIESAEDGYIVFQPGVPVPVNLVVTNLGNGVDDLVLGVDGIPDGWQSSIL
                     VEGEPIDSTFELDLNGYEGDSANVTVLVVAGSTMTPGTEVWLTFTVDSSISSLSNPVS
                     ITRSGYVDVALSNIVSDWDDVDSGGVIGGSVSSGFSIENTGNAVDDALEVKVSISPVS
                     PDVSISILTMDGNLPVNAYQAVSILPGVTKRIDAVVNIGSSMALGTDVVVTRYVRSSA
                     GVEESSFTFKVDRFRTVGLTGISDSEFMLPSNGQAEFIFNLTSMSTDSTEVDILLGSV
                     DGLEYDCSHQAETERLRVFLLESPVATITIPITCEVTATPEFVDGTVSITVVADDGTE
                     LANAEILIRQEQVVKEEGISSGLVVGSIGVILVLLIVGAVVTVMLMRRREVDDEFDDM
                     GSYDTYSDVQNTPEVQIESVQPVMDGPPLQTHVELAPAQVSGPPVVVAAEPESYTPTV
                     CGDCGYGFHAGSPWVSCITCGASRHPQCAMNTPSCWTCHSSSTETTSQ"
     gene            complement(11266..11718)
                     /locus_tag="HA345_00310"
     CDS             complement(11266..11718)
                     /locus_tag="HA345_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family protein"
                     /protein_id="HIH83828.1"
                     /translation="MTSREIDWANVHPYRADVPWGYDSRRADPSNQERQAVVFIRKNF
                     NRIERIVRRVLGGTDYLQRPMDVIMTTLWELCDGETPFAEICTILDHQFKEDIAPVGE
                     RAIAAVSELARLGLLTLHQGPVQDPESRHPNPVKDEEYHWLVVSVEEE"
     gene            complement(11715..11891)
                     /locus_tag="HA345_00315"
     CDS             complement(11715..11891)
                     /locus_tag="HA345_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83829.1"
                     /translation="MLPALWWVLFSLCSILGVATWYLKNFTERRDLTRLCGILGAILM
                     IALVQWTYSAGLIE"
     gene            11988..13295
                     /locus_tag="HA345_00320"
     CDS             11988..13295
                     /locus_tag="HA345_00320"
                     /inference="COORDINATES: protein motif:HMM:NF025030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HIH83830.1"
                     /translation="MDVIRWIDHGLRSIGRYGGSSIREPIIRLSVMELILVVTILSAW
                     YLSGPLSLFGLASILIASFYVLGIHRVWSENEKLRREIAQRIIDEDPDQHPDLRLNVL
                     IVSMHLIVIVPLLLWRLNDVFNLYSVPEDVTGKDWWLFGIDLLSRSLLDWAEVYEVKW
                     SRIEPDAWMGRHIVLALLILIDVLLIQSILRLISIHRTIREGVLAAGRDPETAARIGE
                     RVNVPLVRSILDDSTDEERRNRIRALALTGGPEDAMRIWPLLNESDLRSEVLATLVRI
                     GPLTLTDRLLSSDSVALRLAAIQWLKIVDEDEAWERIARCATDPDSTVRASTIGTIDG
                     APIRHAEPVIIRLVRDSDTDVALEASRQLRRLDDAETLLRVSRPLLETGSSGVKIHTI
                     DALSQIEDGRVVPLIVGMFEDSDENVRSAAQQAIEHLKRIASA"
     gene            complement(13324..13818)
                     /locus_tag="HA345_00325"
     CDS             complement(13324..13818)
                     /locus_tag="HA345_00325"
                     /inference="COORDINATES: protein motif:HMM:NF014573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HIH83831.1"
                     /translation="MAKFLMITATTGTNLELAERFAGVAREKGHDAEVVDLVEMDLPM
                     FTVARSSDPEQTVDVSKLTQQMIEADAWIVVAPEYNGSMPPTLNNAIAWLSGDWQNFR
                     TMCTGKPVGLATHSGGGGAHVIMAMRQMFSFIGADVMGRALTSGRNKEANPETIDAMI
                     DNLA"
     gene            13908..>14342
                     /locus_tag="HA345_00330"
     CDS             13908..>14342
                     /locus_tag="HA345_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83832.1"
                     /translation="MVSHGHDECPHCESDLSGGEPQCPSCNGALYGIAPTRKERVQEV
                     AREVVSTTTSVLGTAADKAQDAGRKAMDSIGSGIERASTKIGEISIPNLRRGDNPQDE
                     PQGNIPIGESSQFETPEPITEIEEPEVDETVDETMSETMRLIQ"
BASE COUNT         3612 a         3122 c         3377 g         3921 t
ORIGIN      
        1 ccggattcag aaggccgttc taatggccgg accggttcag acatagaacg gattctagcc
       61 ttccatgaga ttggaaggga cgatccagta gaatatatcg aagattggaa atctgtgctt
      121 agacatgcgt tgaatgtaca ggcggaacat ggtgagtgat atgtcaggta aaccaagatt
      181 agacaatgag cgtgatgctg agtggcggaa tcgtttgagt cgattagcct acaaggttac
      241 acggcagggt gcgactgaac gtccattcac tggtgatttg tacactgagg atagggacgg
      301 aaactaccat tgtgtatgtt gtggccatct tctattcact tcggaaatga agtatgattc
      361 tggttgtnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnngaa atgaagtatg attctggttg tggctggcct tccttccata
      721 cagagcaccc agacgcaggt attgttcgct tagaggatga ttctcatgga atgattcggg
      781 ttgaggttcg atgccaatcc tgtgatgcac atcttggcca tgttttcaac gatggccctc
      841 gcaagaatgg tggtgaacga tattgcatca attcagtatg tcttacattc gcggagagtg
      901 gtgagtaatg gtcacatcga ttcgccgttg ggtcgagacc gataccggtc atcgtgtgcc
      961 caatcacaag agcaaatgta ggcatctaca tgggcaccga taccgttggg aagcagaaat
     1021 tgaaggcgat gtagttactg attcgggtgt atctgatgaa gggatgctga tggattttgg
     1081 agatatatcg gcgattttaa cacgcgagat tcatgatatt gtcgatcatg cctttgttgt
     1141 atatacagga gatgatgatg cgattcaagc actccaagct atgggtccaa gtcatagaac
     1201 agtgattgta gattttattc ctacagcaga gaaccttgca agatgggcct ttgagagagt
     1261 tgaaccattg attcaatcat cgtatgggaa tagattgcga ctagtggcca tgcatgtgag
     1321 ggagacgccg aaatcttggg cttcatggcg ttccaattaa tgtattatct ataaggaacc
     1381 gtgattatat actgattctt tatgcgtagt aatatgtcta cgaaggttgt tcctaaagcg
     1441 ctattactca cattactcat gttcgtgtct gttcttgcag gttgtgttgg gaccgatggt
     1501 gagttgaact ctacagatat ctttgatttg gtggacgcag atggcgacgg aattcttgac
     1561 aatatagacg attgtccatc aacagctgca gatagggaag tgaatgctac tggttgtgaa
     1621 aagggagcag atgatgatga gctcccccct ccaacagaga aagcgcctac aatccatatt
     1681 ggaacagacg gggatcagac gattacttgc gaccgcgata aggatggcgt aaatgttcca
     1741 gatatggtgc tactgtctgg actaatcgat aactacgata caagtatgct tgatccatat
     1801 cctaacccaa gcgctgaatt agatttctgg catgaccaaa ttccaggata catcgggaat
     1861 cttcctggat ccgaatacga cactccccgg gtaggccaga ttgttatgca tacattccaa
     1921 ttgccatatt cgctgactgg tggtacgatt actgatgcga cattggaaat gaggttgaat
     1981 tatcaggatg atggattgcc taccgctgtt ggtgttacgc cttctgatac tatcatgctt
     2041 cgatttgagg atactacaaa tcctgcttgg agcatgaata tcgacctaac tgcaacatct
     2101 ccaactgcac cttggctcga tgcgatttat ttcatgcatc tagatacatt gcctctggca
     2161 ggaacaactg ctgcccaagg tgctgcagga aatacaaata tgataccgag tatgaactca
     2221 gcagagctcc ttgacattgt tgtctatgac acccagatgg ttgattactt cgaattgtca
     2281 ttatgtgtta ctccagaaaa tcccccaaca actcataaca acattacaat tgggaaaaat
     2341 tacgattgcg agaatcgtgt caatcctgat cctgatgcag cacctttcac cacatacaat
     2401 cattatgtca tgactgcagc agtcaacgat atttttgcct cagccccccc ttctgaaacc
     2461 gtctcaccta gtgctgccct ttcagcacat cataatcaac agaaccctgg attcacgctt
     2521 gcgatggatt atgatgacat gaatccagga gctcatcttc tagaaacatt tgattggaca
     2581 acatatgttc aaaatcagat ttctagcaat aacctcgcat cgcaccaact tgttgatgca
     2641 tctttacact ctcaaatgag ggggagatcc gttgaatctt ctacagacga tgtctttgtt
     2701 ctgagccata ttaccaatcc agtttcaacc atgtctacac catattcttg gtgggccaat
     2761 attggaacat catcgatgaa tccagttggt tcatggggca ctcactacac catgtatctt
     2821 tcacagatgc cagcaagcgg cggctcctta gatatgttaa acatggttag tggtaatctc
     2881 gatatgatac ccaacatgga tacatcgaag tcattggatg ttcatatcta cgatgatcag
     2941 gccgttgact atcttgagtt acacctgtgt tttgaagaga tcatgaatcc tcctcctcca
     3001 ccaattgaat gggataccgg tggatcttat tcttgcgaca caaatagtaa ttctacttac
     3061 caaacaagtc acacagcagg tatgcaggat ggttatactc aatcgatgat cgatccactt
     3121 actaacccaa gtcaatcatt gatgaattgg ggttcagcac taatgttttc atcaactcaa
     3181 ggagttccat cgaatccaat tacacaattt gtggaattcg atgaaggggt tgtgcatgat
     3241 gacggaatct tagctcatac gttcacaaat ttaccaagtg cttcaagtca gggtggtatg
     3301 atgattacag atgcaaaatt ggttgttgag ttcaagcatg gtttgagtac caattatgca
     3361 gacgatttga ttactctacg atttgaagat ccaacttacg ctgtaactcc atggactgct
     3421 aagattgcca atcctgttac tccaaatcct acgggatatg tggcagttct ccacctcgat
     3481 gaactgccta ccacaggaac aacgagtcta caggcaatgg ctgcagcagt tgcaagtgga
     3541 actacaactg gaggaaatgt ccatcttcta agtcctatga atgcactttc aatactagat
     3601 gttaccattc aggatggagt tattgttgat tacatgcaat tgacagtatg tgccgaagac
     3661 atcacattgg gtgacgatgg ttttgatggt aattgcacaa caggtgtgaa taccattgag
     3721 gtttacactg ctggatttca ggataatttc ggacctatga ttgatcctag tatcagtcct
     3781 agtcaggccc aacatgatta catgaaatgg tctcggagta actgtccaaa ttgcaacact
     3841 gtgacacaac aacaaaactc acatcttcta gctgattttg atggccaaca aggtgtccct
     3901 acatacaacg gtctaggaaa tagcaatcaa ggtcaagata acaggtggta tatgcataaa
     3961 ttcacagggc taccaaccga tatcctacag gctaatcttg aaattggtat gaaggatact
     4021 caatcaactg ttgatactga ttctttgatt ctatcttggt tagaaactga tgccaatgga
     4081 aactgggtag agcagtctcc aaatggagta gtaccaccag aaatatggtc taatccttca
     4141 ggccagtttt ctaaccaact tgtgaattat cagttcacaa ccttgacagc tcaaaccacc
     4201 cttccaggtt acgttctaaa tctggattta ggtaatttac gagtatctgg tagtcaattt
     4261 atcgacggcc cgtctatggt tggtaacagt aatcctccat tatcgctaat tggtgcaata
     4321 aatgccaagg gttctatgga agttctcgtt caagatgaca caatggttga tttcatgcga
     4381 ttgactcttt gccgagataa ggaggcggat cctgatgcag atggtgatgg tatccctgat
     4441 tctgtggaag gattcacgaa tgatactgat ggtgacggca cgcctgacta tctcgatatt
     4501 gatagtgatg gcgataatat ccatgattca actgaatggt tcgatcaatc aggtgcacca
     4561 ggtgctgaca ctgatggaga tggtacgcca gattaccaag atactgatag tgatgatgac
     4621 ggcataattg atgatgttga atcagtagtc gatattgact ccgatggaga tggaaattgg
     4681 agagatgaag actctgatga tgataactat ctagatgaaa atgagtggac aggggatcct
     4741 agtgccactc cacctgtatc tagcaccgat ccttacgatc ctaattctca tccttgacgg
     4801 tatgatttgt gtcactcctc tggagtttca tcgttgagcc ggagggcact ctgtgccgcc
     4861 tccagcgcct cagcagcatc attgaggatt ccaagtagcc gatgagcttc gaattgatct
     4921 ggtccgctcc gcattagcgt cctgattagt tgctcccttg ctcctctctt cttgctatca
     4981 tgaattggta atgaatcggc gactctcgct gcactttctc gtagtgtccg tctcaatatt
     5041 ggatccataa tagagcgttc atcttcagat tctaaatcta catcttgatg catagaatat
     5101 gcgacgactg taatagcgtg agatagattg agtattggat aaccttccca agttggtatg
     5161 gttagaagca agtcacatag gcgtaattgg tcttgaagaa ggcctatgcc ctcaggcccg
     5221 aatacgatgg caacacgtcc tgataatccc ttgagattct caattagatc actaggtgtc
     5281 agaaaatgtc tgaattggat tttagcacct aattccctct ttccagaggt tccgatcacg
     5341 agagatacgt cttccatgca tgattcccaa tcatcgtagg ttccagcatt atcgagaacg
     5401 gattgtgcat gcttagcacg tttccttgtt tcttcttccc aatttccgtc atgaccgatt
     5461 actctgagct tatcgaatcc aaagttgagc atacctctgc aaactgcacc aatgtttcca
     5521 gggaactcag gtcgtactag gacgaagaca atttcaagag ggtattcagg aaggtcgacg
     5581 tccagtcgat ttcccacagg gttcgcccct aatcacgacg gcgctggaca tatcgtgtga
     5641 tgtatccagc aatccagttc ctcatgcgct tgttgtatac atcggtatac tcgtcaacta
     5701 ggaccttgtt gttatcgaaa tccgagttga acttgtccgg atacatctcc aaaagtagga
     5761 gggctcggga cttgatgaat gaaggacgga tattgcccat caggcctcac cttcctcatc
     5821 ttcatcatcc atcttgattt cgatggggaa tccttcctca cgggttacta taacctggat
     5881 cttacggggt ggcttctgca tgccacgggc ccagatagtg tggttgacag actcatcaat
     5941 ccaaatcctc tcctgctcgg tgactttcat gtggcggaca acgtgacgct tgacttcttc
     6001 aatcgcccta tttgcccgat ggttacggct gactttccaa gcaccacgga gtggaatagt
     6061 cattcttcga acatcagcca ttattcatca cctctggagt ttggaacggc gccaattgtg
     6121 gcgcttagga tgggactgaa cctttcggtt ggttcgtagg atcacccaaa ctgggacacg
     6181 acgattagtc ttcgtgacct tgtttagacg gttcttctta ccgaaggtct tgcgtgatga
     6241 catctacttc acctcagtat ttccctaggc ctggagcggc ctcttcagca gacggacgga
     6301 tttccttgga tacttggtca aggagtgact gcccagctgg agtcacaatc cgtcccaatt
     6361 cctttgttcc tgctagattc ttcttgatta ctgtgtatcc agaatcatct agttgctgta
     6421 gaagagtgcg gacgacgttt ctagatcctg tcactgcacg gttaggtcgg acgccacggt
     6481 tgcgagctcc tccatacatc tgggcgaggt ggttggtgcc aattgggcca tggagggcga
     6541 cctttcgaag aatggaagca gcacggcgac tccaccagtc tggttggaca ggtggcatct
     6601 ctctgtgagt cccggtcttg acaatttcag cccactctgg ggccttgatg gaatcattgg
     6661 attccaacag cgctttcacg ccttcgatga ggtcaccggc aggaacatca cggaaagacg
     6721 acatcgtatc accaagagca tcccgccgac tttccccgcg tatatgaacc ctcccgggtc
     6781 ctttgtctca gaaacgattg ccggaaaggt gtaggtgtca agcgcggatt tgaaagccat
     6841 agcaccgtgg ctcggtcatg cgcagggcgc tggcacagaa tccgaacatg cttcggacta
     6901 tcgttggcct aggtatgacc ctaatcctaa ttctctctta cgcggtctat tctgcgacgt
     6961 tagattcggg atactatctg gcgaagacgt ccaatgatgc tagggatgtg atggttgttg
     7021 atgaccctat caatgggtct tacacattct caactgaaga tgcaatatct tggattaatg
     7081 tcactattga caatgctcct ttcggatcta taatggaagt cacagcagtg ggtggagtat
     7141 ggtggtacca tcctaatctc gggattgaga tggatgacaa tgttccattc caatgcttta
     7201 ctcctgatac ccaggattat gaggggattg ctgagaactg tgaaagttca gcacagcact
     7261 cgtcgaatat tgaggatggc actgcgtcga tgagagggat tctcacgtct gatttacccc
     7321 tgtctggaac ctgggccatt ctttctgaca atttgacatc tgcatctcta gaagttaatc
     7381 gaacccttga ggatgctcaa ctcaatcgga cttggacaat tagaatcttg gatgacactg
     7441 gttcgccaat gaactccaca gggactggtg tacaggttgg gacggtacat cacgatctga
     7501 tttcagttga gcaattcacc attgacccca tcacggaatt gatctggagt atgactgcat
     7561 tggtgggttg ctttggtgtt actcttattc tcccagtcac tttgtatctc gctgctctgg
     7621 caaagacgaa gaaggcagaa gcagaattat cctctacttc ggattccgag gaatagccgc
     7681 ggatttcatt aatgcggtga gccatgaaac tacgatgcgt catagtcgga gtcgtacggc
     7741 gctcgccctc gtcgctctgt ttctcatgct accattggtt cctctggctg aagctgttag
     7801 cccaaaggca acagtggatg taaagcctct aactttcaca tcacaatacg tctcaagtgc
     7861 ggatgcatca gattacaata ctctgtcacg tacgacgaca cttgcgaggg ctcctcatct
     7921 ttggatagtg gatgggatgg tagatactca gatgcggatg gtggttgaaa tcgagaatat
     7981 tggtacttca agtgcatcag gagtcaatgt tgagattgtt gttctccatg atgagtacat
     8041 cgattttgaa ttgcataata cgtcggtgac cacgtcagta tctgcaggag caactgccac
     8101 agtcaatgcc gtatggacgc cgaagtacag tgggaaccat acggtacgca tcacgactaa
     8161 ccatccccta gatgctaatc cacagaacga tgagggattt gcaacaacga caattggagc
     8221 agtttacgaa cgctgtgaat ctaacacagc atggtctcga actagtaatt ggttattgga
     8281 ttcctcaaat gcattgaacg gagcatcatc ttgcagagtt ggaggtgtgt cctcatcgaa
     8341 ttatggtaat atgtggacgg agacattgcg aagtccacaa ctagatttct ccgatgttca
     8401 tccgaatccg acacgtggtt tcggcctcgg atttttctac acgggtaatg ttgcaaccgg
     8461 ggactcaatg caggttagcg taagttcagg ttcaaacaag gcggatctaa tccctaatgg
     8521 tggtctcaat ggtctcgtgg atggtcagcc cactagctgg ctaatccagc ttagcactgt
     8581 caatagcgtc tccgtcccat ggctctacat tcctccaaca gctcttggtc ctcagacaca
     8641 aatcgagttc aaattcacat cagatgcatc gggaacagag gttgggtatt gggtcgaaga
     8701 tattgtcatg ttttacgacc agaaggccga tgcaagcgaa tttggtttgg atgcatcagg
     8761 tagccctagt gggacttcaa atcgaggaga atggtctgat atgtcgttta cagttcgtaa
     8821 cactgggaac ttgacagatc gcttcacact cgaggcactt ggattgcctg caggttggga
     8881 tcatcgattc acacattcta ctggaagtgg agtcctccca ggtactgaga ttcaaattga
     8941 ttcaggagaa gtacggacat tcaaactcca gacgaaacct cctgctaatg ctccaacagg
     9001 tagtattcag ggcacaattt tggttcagag tgctgaggaa tcaactgttc aagattctat
     9061 cacattcaat gctggcgtag ctccagaata tacatctcaa tgggtcgaag taagtaactc
     9121 cccacgatgt cctcctgggt caatctgtga ctaccgtgtc gaactactga acagtggtga
     9181 tgcgggagat acctacacat tgactgttga tgatgtttcc atgccacagg ggtggtcagt
     9241 tgattttgat tctagtcagg atacgtctct tgtgcttcct gcagggggaa atggaacagt
     9301 tgatttgact gtgactatcc cgtcaacagc atctccaggt gaaactggag tagtagcgct
     9361 caaggcacaa agtggagcag acacatcttc gattactgtt catcaactaa ccattgaggc
     9421 ctcaatggtc agtgatctac gaatcatacc tcaatggggc aatatgccaa ctcacatacc
     9481 tccaggttca agccatctcc ttgagtggaa tgttgtcaat caggctgaac gtctagatga
     9541 ggttcgcttc aattggtcta tcgagggtgc ccagacctgg caagtttctc tttcaggccc
     9601 tgaaagcgcg tcaatctcag gaggcgaatc tagggtgatg cgcatactcc tagaggctcc
     9661 ttcagatggt cacgcacagg acccgtctcc tattatcaca ccaattgtca catctaccct
     9721 ttcaggcgac gttatccaag ggtctccgac atcaggtcct cgaatcgggc agattcatga
     9781 tctaagtatc gagtctgctg aggatggata tattgtattc caaccagggg tgccggttcc
     9841 tgtgaattta gttgtcacaa atctgggcaa tggtgtagat gatctcgtcc ttggagtaga
     9901 tggcattcca gatggttggc aatcatctat ccttgtcgaa ggagagccta tcgattctac
     9961 ctttgaatta gatctgaatg gttatgaggg cgattcagcc aatgtgacag tccttgtggt
    10021 agcaggttca actatgacac ctggaacaga ggtgtggttg acattcactg tggacagttc
    10081 aatctcatca ttatcgaatc ctgttagtat tacaaggtca ggttacgtgg atgtcgcatt
    10141 gtctaacatt gttagtgact gggatgatgt tgattctggc ggtgtcattg ggggtagcgt
    10201 ttcctcagga ttctctattg agaatacggg gaatgctgta gatgatgcac tagaggtcaa
    10261 ggtgtcaatc tctccagtat ctcctgatgt gtctatttct atcttgacga tggatggtaa
    10321 tctaccagtc aatgcctatc aagcagttag catcttacca ggggtaacga agagaatcga
    10381 tgcagtagtc aatattggga gcagtatggc tcttggaaca gatgtggtcg tgacaagata
    10441 tgtacgaagt tctgcagggg tcgaggagtc ttcattcacc ttcaaagtgg atcgtttccg
    10501 aacggttgga ttgacaggta tctctgattc tgagttcatg cttccttcga atgggcaagc
    10561 tgaattcatc ttcaatttga cttctatgtc aaccgattcc acggaggtgg atattcttct
    10621 gggatctgta gatggactgg agtatgactg ctctcatcag gctgagacag aacgtcttcg
    10681 tgttttcctg cttgaatcac ctgtggcaac aatcactatt ccaatcacat gtgaggtgac
    10741 cgctacacct gaattcgtgg atggaacggt cagtatcaca gtcgtagcag atgatggtac
    10801 agagttggcc aatgcagaga ttctcattcg tcaggagcaa gtggtcaagg aagaggggat
    10861 atcctcagga cttgttgttg gatcaatagg agtcattctc gttttgctga ttgttggtgc
    10921 cgtggttact gtgatgttaa tgcgaaggcg cgaggttgat gacgagtttg acgatatggg
    10981 gtcttatgat acatattcgg atgttcaaaa tacaccggag gtgcagattg aatcggttca
    11041 acctgtgatg gatggaccac cattgcaaac tcatgttgag ttagcacctg ctcaagtcag
    11101 tgggccccca gtagtagttg ctgccgaacc agagtcatac actccaactg tttgtggtga
    11161 ctgcggttac ggcttccatg cgggatctcc atgggttagt tgcatcactt gtggagcttc
    11221 taggcaccct cagtgtgcga tgaacactcc atcctgttgg acttgtcact cttcttctac
    11281 tgagacgaca agccaatgat actcctcatc tttcacagga ttaggatgtc gtgattcagg
    11341 gtcctgaact gggccttgat ggagggtaag gagtccaagc ctagcaagtt ctgatactgc
    11401 ggctattgcc ctctctccaa caggtgcgat gtcttccttg aattgatgat caagaatcgt
    11461 acagatctcc gcaaatggtg tttcaccatc gcataactcc caaagtgtag tcatgatgac
    11521 atccatgggg cgctggagat aatcagtacc acctagaact cgccgaacaa tccgttcgat
    11581 acgattgaag ttcttgcgga tgaacactac agcctgtcgt tcctgatttg atggatctgc
    11641 acgtcgagag tcataccccc agggtacatc agctcggtag gggtgaacgt ttgcccaatc
    11701 aatttctcga ctagtcattc tatcaacccc gcagaatatg tccattggac cagggcaatc
    11761 atgaggattg cgccgaggat gccacaaaga cgggtaaggt cacgtctttc agtgaaattt
    11821 ttcagatacc aagtggcaac acctaggatg ctgcagaggg agaatagtac ccaccacagc
    11881 gccggcagca taggtgcccg tgtagaccgt ttcaattcaa tgaatcgaag ttcctggttg
    11941 aaatcattcg tgtccattca tgaaccgttg ttgtcggatt caacccaatg gatgtcatcc
    12001 gatggattga ccatggtctg cgatctatcg gtcgttacgg tggttcgtca atcagagaac
    12061 caattattcg cttgtctgtc atggaattga ttctcgtcgt taccatcctt tccgcctggt
    12121 atcttagtgg ccctttgagt ctatttggcc tagcatcgat tctaattgca tcattctatg
    12181 ttcttggtat ccatcgtgtc tggtctgaga acgagaaact tcgtagggag attgctcagc
    12241 ggattatcga cgaagatccc gatcaacatc ctgatcttcg tctgaatgtc ctcatcgtta
    12301 gtatgcatct gattgtaatc gtcccacttc ttctatggag attgaatgac gtgttcaatt
    12361 tgtattcagt acctgaggat gtgacgggga aggattggtg gttatttggg attgatttac
    12421 tctcaagaag tctgttggat tgggcagagg tctacgaggt gaagtggagt cggatcgaac
    12481 ccgacgcttg gatggggaga cacattgttc tcgccttact gattctgatt gatgtgcttc
    12541 taatccagtc cattctccga ctcattagta tccatcgaac aatacgagag ggtgtcttag
    12601 cagctggtcg agatccagag actgcagcaa gaatcggtga acgggtgaac gttccacttg
    12661 tgagatctat tcttgatgat tccacagatg aagagaggcg caacaggatt cgtgctctag
    12721 cattaaccgg tggaccagag gatgcaatgc ggatttggcc tcttctgaac gaatctgatc
    12781 ttcgttctga ggtcttggca acattagttc gtattggtcc attgactttg acagaccgcc
    12841 ttctttcttc agattctgta gcgttacgcc tcgctgccat ccaatggctg aaaatcgtag
    12901 atgaagatga agcatgggaa cggattgcta gatgtgcgac agatccagat tcaacagttc
    12961 gtgctagcac catcggaacg attgatggtg ccccaatacg tcatgcagaa cctgtaatta
    13021 ttcgcctcgt tagggattca gatactgatg ttgccctaga agcatcccga caactccgga
    13081 ggttagatga tgctgagact ttacttcgtg tctctcgtcc tttgctagaa actggttcca
    13141 gtggagttaa gattcacacg attgatgcgt taagccaaat cgaggatggg agagtagttc
    13201 ctctgattgt tggaatgttt gaggactccg acgaaaatgt tcgaagcgct gctcaacaag
    13261 cgattgagca tcttaagcga atagcatctg cttgacagca tcgagatgaa tgatttgata
    13321 gtatcaagca agattatcga tcattgcatc aattgtttct ggatttgcct ctttgtttcg
    13381 accggatgtc agtgctctac ccatgacatc tgctccaatg aatgagaaca tctgtctcat
    13441 tgccatgatt acgtgtgccc cgcctccacc actgtgggtt gctagaccta ctggcttacc
    13501 tgtacacatt gtcctaaagt tctgccaatc gccagaaagc caagcgattg cattattcag
    13561 agtcggaggc atcgaaccat tgtactcagg tgcaactaca atccatgcat ccgcctcaat
    13621 catttgttgt gtaagtttgg aaacatctac tgtttgttca ggatcagatg aacgtgctac
    13681 tgtaaacatc ggtaagtcca tttcaaccaa atccacaacc tctgcgtcat gtcctttttc
    13741 tctcgccact cccgcaaatc tctctgccaa ttcaagatta gttccagtgg tagcggttat
    13801 catcagaaat ttcgccatga acctcgcaac actaactgag tgatgttcat tccggtcaat
    13861 aacagcgaat acttattgcc aaatcgaata accgtagttt gttccgtatg gtgtctcacg
    13921 gtcatgacga atgtccgcat tgcgaatctg atctttctgg tggagagcct caatgtccat
    13981 cctgtaatgg tgcactgtat ggcattgcac ctacaagaaa ggagcgagtt caggaagtcg
    14041 caagggaagt tgtgtccact accacgagtg tacttggcac tgccgcagac aaggcgcagg
    14101 atgctggccg taaggcaatg gatagcatag gaagtggcat tgaacgcgcc tcaacgaaga
    14161 ttggagagat cagtatcccg aatctccgca ggggcgataa tcctcaggat gagcctcagg
    14221 gaaatatccc cattggtgag tcttctcagt ttgaaacacc tgaaccaatt acagagatag
    14281 aggaacctga agttgatgaa acagtagatg aaaccatgag cgagacaatg cgtcttattc
    14341 ag
//
LOCUS       DUKB01000010           41839 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_1334, whole genome shotgun sequence.
ACCESSION   DUKB01000010 DUKB01000000
VERSION     DUKB01000010.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 41839)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 41839)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41839
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_1334"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2906
                     /locus_tag="HA345_00335"
     CDS             <1..2906
                     /locus_tag="HA345_00335"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83833.1"
                     /translation="VSEGDETNNVEVGNSLYIAVPDYDLEATSISVDSGYRQVCEGAD
                     IYITLSVTNLGTDNAGSHYYEALVSTGNSVSAIYTGTSLGYASGTANVPSYTHSSIQA
                     TLPTTITPGTYYVGIYVDYGDYISESDENNNIAVTNSSQLTVIDCGPDLEPTSISGPA
                     SGVRGGTAQVSVQISNTGMEDVASVDYSIYLSTDSSISGTGNDILVGSDVAGTIAQSS
                     AWSGSVNLGIPSNIGDGCWYWGILVDPNNSIVEMDETNNAMPSSGQFCIEQADIVIDS
                     IGYSNNAVSGQSSTVFINVSNIGGSDAPSFTARLLLSIDAQSGTDDTQVDSFRVDPLT
                     SGSSVNIVRNIIIPGQHIGDFHWVVIVDTASEIEEDDESNNAAASTAFTISAPARDLL
                     AAWVESPLSAEPGQTVSIEWGAENLGQEPLGFDIEIWLSEDRTLGSGDIRLSQSRVPA
                     LPSGSTIADSQVVNLVGDIDGVWWVVLVIDSGGEHYEDDEANNIRISNSTFVIDSSSP
                     PPAGDTLSGCDNPQTDGRFESDAASTRSSAHHLGANANLTLDGCLIGLDVVDWYAIVI
                     DSGNRTSVALSAEGAHLEVTVLNGSGALGQEIVDDEVRWVTISALNDDIDGVGLLYHI
                     RVTWDPAMPGGPYQLRFVTANASIETDLTPPPAPQIISMDEWKYADELTIYWQPVVDD
                     LSGISYYEVRWAGGLWAPVTQNESIVNLTMFMDGRYSFEVRAVDEAGNIGPANATWIR
                     VDRNVPLVSIEQVNASRSPVSKLVVELTIDDGLGSGPSNIEWSDNNLTWNTHREDGLI
                     LWRDWNNTELFVRVTDGANLQTVLKFQIEVPPDESENIETLDNENSGLKGSWGVSTLL
                     TLIFALVIVAISIFTVMLAIRLRAQGLTDEDAEEASEDESNDSELARTNQQAETLHVP
                     DYNHLIPGGVYDQSTGHTVYIDPEGRWWWQQEDGSFFHDQAFNANDTTPDALP"
     gene            complement(2903..3529)
                     /gene="pgsA"
                     /locus_tag="HA345_00340"
     CDS             complement(2903..3529)
                     /gene="pgsA"
                     /locus_tag="HA345_00340"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HIH83834.1"
                     /translation="MDEERVISPWPNIVSMSRLGAIPLILVFYLLWFDGFEFPESWAW
                     WAVLAVFGIGMATDVLDGYLARRLDSVTVFGRMIDPLIDKILIQSMLILMAASPWTSA
                     LIPSWAVVLILAREVLITGFRGYAEVQDIDFSASPLGKGKTASQTIAILMIFGGFAVH
                     GASMADMVYADICFWMMMLATFLTVASGGEYMVRLRNALNQEPESQSI"
     gene            3660..6839
                     /locus_tag="HA345_00345"
     CDS             3660..6839
                     /locus_tag="HA345_00345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83835.1"
                     /translation="MARIKSLGLVLMFVLMSMTGFASLVAASGVTDSDLQAQNISVSW
                     DPTYEFTRIQWDNLDTSDFQVMNDLQVATYRVYRSDMPITTPDIENGNLTHFASIPAC
                     EAEWSVGNCRNQARSVIHLTSHSNVGSYHYAVTTILGNGTEAAFVEMNVSQNYEAVNE
                     TSHAITSVFNLNATYDGVNQQTVLEWENTVPVFFPGQLVETGENAYTIRIYEHPIPAN
                     RTNWDQINPTLVAQDIPAGTSSYSLSVPSGVDRNVYYTATIVDQGFEDFRFLTQNSIL
                     SPVREDSRAPSPAMEVAASFSAIPETGFGTTTIVWGDDPIEDGNERYRIWRSPTPFGQ
                     NISGAQLIGEVSAGEEMFGYTIQQGVLAESYYAVTVADWIGNHDGLLSSGSTSTLIFE
                     DTFNPWIAEPTNVTAVYDNGMTTITWNDQMGAEGENYHVYRSVGSRLTSASDLVNDSN
                     IDLVATVPDGVQTTEASVPENVYQNTYYCVTSEARYGYINGTYEDTRFIQNCSDAILE
                     DTQAPRAPQMSSPLLEVMADPKFALVTWLNDFEEVDETYGLWVHSGNPWGIENWEDEL
                     VLTTNATAENGWTLLETIAEPSASTTQMYRSIAVDDDVDRYRWYAVTQTDQWGNENTI
                     VSNEFNAWLVHEDTTAPTAVITVEGEDDNDENFIAEALTQGDYQLLFKVNEDLGEDPI
                     INVTTTGGHSFTEEGGLVRAEKVPGKADTYRLRMTVPSGLVNSDLRVEYTLVDVAGNT
                     RTEVTLGWPIDVEDPDIQMYSPGPDSTYLYGEYVRIHGSVTDDVGVDYVRIKFEKGLD
                     QTSILRTEWFNVTDITAVDDGGKTFVFEYLDPAASWPEKGRQRLIVEAGDSAGNVEEI
                     RITFIVDLCQRSTSGYTVCATEVADMQVPDDDGDNVPNDADSCPTTPPNTEVDSATGC
                     VSPGMFSGTFLLVYVMGGLNLILLLAAIVAASMANANPSRKRRGDEEDMLDEDDWMAD
                     FMGGGEGGSADDVRADLGSLNEKSEEKEEKSEDKQVEEDDDLFQEKVARPKRRTKRKV
                     KDDDDDDDDDDEGGARPSVRRRSVRRRSS"
     gene            6851..7645
                     /locus_tag="HA345_00350"
     CDS             6851..7645
                     /locus_tag="HA345_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83836.1"
                     /translation="MFGMDDPAKVVVQIRSYIGEGRYEIAEVMAQELSTHLLHSKRDI
                     HLDAVLVTALREWVRILHLRGQYSEAHSAARRLAKARKVRLKQIASSGDRDAWSDEKQ
                     LEVEDLILHGRIESERGRLRSSISRFNKAIRINGNHLEARLSKLGSRWRIQGSLKGGK
                     RDALQLLDALERSSGVERIGGVMGMRNGDGTLVSLDRIQSILNGVVDPSLGLNKGINE
                     RAKSCLVRINAETAQIEAGEREADARLAAAIDSLQPSMDYHSYSTS"
     gene            complement(7646..10849)
                     /locus_tag="HA345_00355"
     CDS             complement(7646..10849)
                     /locus_tag="HA345_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HIH83837.1"
                     /translation="MVEPYATPLNEVDTKQHNVQPLQWTRNVHPPGGGGLQADLWIPQ
                     TNGALWALDFSPNEEHIAAVDINQRWLMVWNITDGRNIMTAEHPDPLVDVIWLDNDHV
                     VIADSDDDLVVFEIEDNGEAWPMNSSNGHQMSWSKGFTGAKDGFLWGMDLSDDRSRIV
                     ICGEIDDPNIPGEIVSVETSYLTGGQGTPTTIYTSDQPTDCSFSPNGSMVTTVLRNPS
                     GIVNQDRVVAHNIPDLSPLWDRAIGGGEATAWAIDWEPNGMGYTIGWNRPSEGVVTHF
                     RHNDGTIDWYTPIPQDVSSLEWSQIGDALVVGLHDPGRMMIIDQIGTILNDLGWHSTI
                     SAGSGLPADVLDVSVSTGGMMASAGRDGSIEIWNGPASTPELVGVLGNHLTREVSMHP
                     RFNLLAMADSSGTMSVRNLTTGGIERQCFHPDHGVPLDDIPYAKSVDWGDDESVLIGF
                     SDGIIVACDEQGKNVLQNDLSSQGSLEVMGRVRYQSTELIVATYGENATNTSADGVVE
                     ILSSSSGQSLRQWNYDEVYWTIAFGPNQEIMSSVSQSGQVRTWDTIDPDPMMWTDNGI
                     AYSHENYSGANQWFNEYPVLVTGGWDAKIKMYDSTQQVLVTEINAAKEIFDFALDSQG
                     PRIIVGSGDSATSSTGRIQIFDLTTSNLITSMNTIGIPRGIELDHDRNVILVNHTGSI
                     VRFVSDIDQDGVPDDDDAFPTDSTQYSDLDGDEFGDNPAGNQPDSCPDQPGNSYEDRY
                     GCIDTDGDGRSDPTPSWLAHPLGLADAFLDDPYQWLDTDGDGVGDAHSFTVGSNGMRI
                     DNGDAFPNDSTQITDRDGDGCGDNYTYSIDDLGYRVPANGDAFPNNPLQCHDLDGDGI
                     GDNYSYTVDPATGLLIEIGDKFPFDRLAWHDPDDDGCVPSSATDIPYDHDSTNSLVCA
                     APDVPEPQENNTDSNSNVSQTNSDIDNDGDGILDQDDLCPSEPGLSANGGCPVTSNDE
                     NSISDENENQEDQSEPQIWGSLMIVIILGLLMIAGAGFQIIRKKEKSTSESGTPIQEI
                     ERCPECNGVAQEAVENGNRWTWCPTCRKWLQYKGPAS"
     gene            11058..12173
                     /gene="ftsZ"
                     /locus_tag="HA345_00360"
     CDS             11058..12173
                     /gene="ftsZ"
                     /locus_tag="HA345_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011843252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HIH83838.1"
                     /translation="MRHIIDRVLELQEDTPEAQQTPSPGEQDLVDLLKTLQPRIRVFG
                     CGGCGNNTVSRLSDEGLLDDEYVVGWAINTDAQHLLKVNAEHKMLIGRTARGRGAGGD
                     PEMGEKAALESERNLTESVNDCDLAFVTAGLGGGTGTGSAHVIARLAKAAGALTIGVV
                     TYPFTSEGTQRRQNADWGLQRLREVCDTVVVLPNDRLLEVNGVRDLPIGAAFRVADEL
                     LMRSIAGVTELISKEGLVNLDFEDLRSVMVNGGGTAMIGYGEGRGPDRAEYATRQALE
                     SPLLDIDVSDARGALVNVVAGKNLTLGEAEMCAQIIRESINPHARIIWGATVDESMEE
                     ELRVLIVLTGVRSEQIHGASLQNRSQGIRSRSATFIT"
     gene            12241..12531
                     /locus_tag="HA345_00365"
     CDS             12241..12531
                     /locus_tag="HA345_00365"
                     /inference="COORDINATES: protein motif:HMM:NF012793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase SEC61 complex subunit gamma"
                     /protein_id="HIH83839.1"
                     /translation="MSDEGDGSNGIEQRAQAMQDEIESWFRRRQRGDWARIIKMARKP
                     SKTEFRQTVIVCGIGMFVLGAIGFGVLWLMDNLLPSFFDWLTSPTESVQFEP"
     gene            12546..13424
                     /locus_tag="HA345_00370"
     CDS             12546..13424
                     /locus_tag="HA345_00370"
                     /inference="COORDINATES: protein motif:HMM:TIGR00405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor Spt5"
                     /protein_id="HIH83840.1"
                     /translation="MSNAFVVFLRNEEKVLILKRSDAVSEFALAWDGIFGVGDAEDLS
                     VVFNRVTEATGLSSESLKHIRTGTARGIAFGNRLTDVTPILVESSETMVNPAALYSQA
                     EWIDPGDMRKENESDRYTIPSLVEMYGDVGTYLYILKTSIGQEANAANEIRARLSGTG
                     SLAETVDEIHAVLQSDHMRGYIFVEASAQHHVEKIIGRAGNRTTPMKNVRKVLDGEAP
                     FRDIFPHLEPKAATAGISEGDVVEVRVGAFKGQRARVTNISDTKEEITVELFDAMVPI
                     PLTVRGDQVRVTQRVE"
     gene            13486..13764
                     /locus_tag="HA345_00375"
     CDS             13486..13764
                     /locus_tag="HA345_00375"
                     /inference="COORDINATES: protein motif:HMM:NF012519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83841.1"
                     /translation="MSARNETPHVINQTLGVAKCNGSWEAATENLTMDQIKEVANKQQ
                     DRLTGATLFARCREVMGTCVAMRVKVEGLEPKEALKQMKEGAFEAHFA"
     gene            13823..14467
                     /locus_tag="HA345_00380"
     CDS             13823..14467
                     /locus_tag="HA345_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015282696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HIH83842.1"
                     /translation="MREMIQQAIQQALDEAPERKFVETIEIAFTIKDVDLKNPSNRIQ
                     EEIRLPNGRGKDISIAMFASGEMATKAKDAGVHVIDPTTIEDLGSNRQRARKIAKQYD
                     FFLSEVPHMGNVGRYLGQVLGPRGKMPRPVPPVMDIGALSSGLRTTTSIRSRDKITFH
                     GAVGSRSQSVEELTDNTMAVWTRVVGKLERGTNNLRSCYIKTSMGPSIKVEVVN"
     gene            14464..15483
                     /gene="rplJ"
                     /locus_tag="HA345_00385"
     CDS             14464..15483
                     /gene="rplJ"
                     /locus_tag="HA345_00385"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012679.1,HMM:NF036999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HIH83843.1"
                     /translation="MIPKAAEWKKDRVSVLQDVLTKPGIVGIVDIAGVPATNMLDMRA
                     NLRDGMTAIMAKKTLIRRAWSGAGLVENDLEILLDGVVQPMLVHTDQYNAFQLSDELN
                     KTRQGRAAKDGELAPEDIVVEQGETEFAPGPIVGELGAVGIPAKIDKGKVVIQKTTTV
                     VEAGQAIEGDLGMILSKLGINPIEIGLILSGVLEEGTVMPSQSLNIDYDAFRTDVITA
                     TSGAFNLACNISWFASETMPTLLAKASGEAFNVAIEAGISNEKTLPIFMSRAHSRALA
                     LAGHLDSSALDEELAGMLGAAAQTAAATTESTGEEAAPAAEESEVEEEEEEDGGFGGL
                     GDLFG"
     gene            15507..15821
                     /gene="rpl12p"
                     /locus_tag="HA345_00390"
     CDS             15507..15821
                     /gene="rpl12p"
                     /locus_tag="HA345_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014866086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HIH83844.1"
                     /translation="MEYVYAAMLLHSAEKEIDDKTVTAVLTAAGVDADKARVKALVQS
                     LSSVDIGDAMATAVAAPVAAAAPAASGGAGAPAAAEEAPAAEEEAEDDGGGFGGLGDL
                     FG"
     gene            15980..16489
                     /locus_tag="HA345_00395"
     CDS             15980..16489
                     /locus_tag="HA345_00395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83845.1"
                     /translation="MEHATVHEIPVCVGPVDTVRAFRLAAESAGWRVVRHEGKRPVHR
                     MAIIIPLQQSARTFGILIDDGPLEGAAMQAWSHTPGSAGEITTTEWVLPDVIDHEMWP
                     SFIRAWARELPRMPNRWTFGERSRIGYFLPEYGRSRRRLKAWGLDPKVKRVEDIDLNW
                     PSISSEESE"
     gene            16533..17225
                     /locus_tag="HA345_00400"
     CDS             16533..17225
                     /locus_tag="HA345_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83846.1"
                     /translation="MDMQEFFQDRRNQAMFGGSVLFMLIFPIYFALVPSLVGLDGAGA
                     SDSSGTWAVSFTEESFIQIEDGVIINEGETYDSNFMLTEEMIGENRNVASVTIEVSCN
                     DNDDVPPTFNDGGSGESDLAGVTGELQDQSASGNCGGGNAFSMTWNIIEGYDGAPYEV
                     EGKMSDIITQWSDNESARGDWLVGITADINSNPLQFLAPDDSEDYDITWTALVFEMSM
                     EPVLNIDDPTTE"
     gene            complement(17226..18500)
                     /gene="ychF"
                     /locus_tag="HA345_00405"
     CDS             complement(17226..18500)
                     /gene="ychF"
                     /locus_tag="HA345_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017981141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HIH83847.1"
                     /translation="MKIGLVGKPNVGKSTTFAALTETSVEIANYPFTTIEANVGVAWL
                     PLESDCACKELVNKAEDVGRPLESDVSREGSVCTPRSGSCIGYRRIVPVTLVDVAGLV
                     PGAHSGRGRGNQFLSDLANCDALIQVVDASGTTDLEGNPSGEGACDPLEEHEFLIGEL
                     DAWIANILATSWSRGARRAQAEGQNALIRYVHDQLSGLGATESIVVQTLNAFTSDHPD
                     LPVPWSWPEDTVRNLASRFRQALFPVHIAANKADLTEPQTWLSLQETIESKGGLIRAT
                     SAETELALRRASKANAINYQPGDNRFSIREEAKINDAQRKGLDALQKRVEILDGTGVV
                     ALLSAVVFNRLDRIVAYPVQDESKWLDGEGRILPDALLVKQGATAKDLAYAVHTDLGD
                     GFIRATDARTGRVIGADHELADNDVVKIHAKT"
     gene            complement(18510..20243)
                     /locus_tag="HA345_00410"
     CDS             complement(18510..20243)
                     /locus_tag="HA345_00410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83848.1"
                     /translation="MDTIIQMMLIFWGLLILFAWLLRNGMGFVGDALAGMTGFMLGKA
                     LGPGATLLEGRSGSASSSWIHHGLIWLFVGASITFVDLWLGHSPNDLYSLQSWSWDIT
                     GDSAFVPSVFATFAGGIHMMLIGAALHIIPRLANHSLASEGNAGLMAIVTSMGVLTAI
                     IGTQFGNDIGNLIAFGGNALVAFAAVAIIANVLLTVREQEGRIEIPQWFFLFGLIGYF
                     AAQIGFIVNGPGNASTTLWMMLLLQHGIYFGGAAFGLVYYAVPARTGEPLPSRSLIGL
                     TLIGTILTVSPNGYDPAMLGFAEIALGPLEHGVTGGLSLAACGTEASCTGTLFLSALM
                     ALSIPVAFMFAGNVLTAIRRSGALFEDTALTMIAFGALMTPIFAIASLFTTLDSISGS
                     GELATAISTVRLGSQWGAYIPLVLGGILAILPDITGRELDSQSEGRRATYFLAVGVIG
                     AFVFSLAADFANISFAEAMIMAEAEIEGAVSSTASELMPIASVLFYGAVIGVLFITQN
                     VIRSSTTGAPAGTLEVDFDILGPQNYVLAGPTTVRDLLTAGVRLDTMISPEDSSDDDD
                     HVGPTHLSEEE"
     gene            complement(20253..20531)
                     /locus_tag="HA345_00415"
     CDS             complement(20253..20531)
                     /locus_tag="HA345_00415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83849.1"
                     /translation="MEDDGGYGLLDYMRSDEEPELGRTMAGFGAVSLLLFLVLYEVLF
                     PGHGLPVISDLVPLVTGVMDSSIWFFVLGIMLGFFSLLANILFKAVQD"
     gene            complement(20640..21788)
                     /locus_tag="HA345_00420"
     CDS             complement(20640..21788)
                     /locus_tag="HA345_00420"
                     /inference="COORDINATES: protein motif:HMM:TIGR01210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archaeosine biosynthesis radical SAM protein
                     RaSEA"
                     /protein_id="HIH83850.1"
                     /translation="MAGGLLGTDDRAVKIHHLVKAPENTPESIRIRESWDASRPATVY
                     TTPERLPDGTPCTAATVILRTRGCEWWWKSGCTFCGYFNDVRDDVTSEDLHAQWEEAK
                     RRTNDFEDCKMVKVYTSGTFFEDRENPADWQEAVLRETYERGLHLIIEAQAHLCKEEK
                     IRWVAEKHPGCTIAIGLEAYDDNVLRFHCNKGFNTKQWHRAVDNLRKYGLRVKTYLLF
                     KPPFMSEGDAIAQTGKWIRSVAPLSDEISINPMNIQKKTIVDRIHRARQYRPPWLWSL
                     IQLIEDVHDDVQPVSAEKAGTGTRVIVHPTAAGMIRGSHNCGSCDKEAAAAIERYSVS
                     ADLREFEGIDCECRTHWRTEIKLDQSLPTPMGIGRDRRAPVADILRAP"
     gene            21885..23732
                     /locus_tag="HA345_00425"
     CDS             21885..23732
                     /locus_tag="HA345_00425"
                     /inference="COORDINATES: protein motif:HMM:NF023128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HIH83851.1"
                     /translation="MAGVVSSTESTEGVDVSAILNEMSPKEKKALKGWYLYDFANQAF
                     ALTVVTVVAPMLTASLFNTATGGGTEFFGANITGASYYSLVLTASSLFIALCSPILGV
                     IADRVPIKKKILWVYTIVGVIFTALMGLAPFMGDTAYIWLAIFIVIGNIGFAGGNVIY
                     YAFMPYLAPREAMDRVSSIGYVYGFGGGCLILIVHLIVLIGPLPESVSLNMKMSFVFV
                     TSALWWFGWGMPLFRNTPEPEIPNPTEFNSVGEAINVAVKQVMTTFREIRKFPVLSLF
                     LVSYLLFYDGVNTIAAMASAYGDSVLRLPPQAVMFLLLTVNLVAIPMSYIGGRAAERF
                     GTKKVLTSALMVYCVAAVLATGFAPLPMEDNHEVHDFQFNFDENNDIYEIVVLYDKEA
                     CCTANSWFSLNGEGDASFRDTYFTYLTDTTIDGADSNTDYTRKSLTIEEASQMTMLMV
                     NNTDHRFSFSFIGGSENGKQSVGDNHPANLGDGPLDGWAMFMRDNLWGPLGMTVTLQF
                     VFLGMMVGMVMGTAGAQARSLFSLLIPRTRTTEFFGFFGFIGKAAAVVGPLVYAMTVA
                     VSDDRVAILTIVAVILAGTALFTRVDIQKGIAEAEAEDARNKDRSIEEE"
     gene            23737..24456
                     /locus_tag="HA345_00430"
     CDS             23737..24456
                     /locus_tag="HA345_00430"
                     /inference="COORDINATES: protein motif:HMM:NF012360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83852.1"
                     /translation="MGTFDVVQHVLTTFFFVLAAIVWGVALIPPVYGMIFLWMESADW
                     GPIVRSIALGLGAGLSYITWVGLLLIEVGFIGAILRPRLPEGRVPLRSFTTVRWGMLG
                     ALHRMAINQLGLVVPSYIGSFYYRLMGCKVGKGAQLNSTSINDCFMVHIGDRTVIGGG
                     AAINGHIVEKGELVLSPIRIGKDCVIGSGSFINPGCTIGDGAVLASRAVLPKWTEIPP
                     GEVWAGIPACRIQSRNTPEED"
     gene            complement(24461..25954)
                     /locus_tag="HA345_00435"
     CDS             complement(24461..25954)
                     /locus_tag="HA345_00435"
                     /inference="COORDINATES: protein motif:HMM:NF012686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83853.1"
                     /translation="MEPTLAYGLLIATIGLFGYIGYNAASGKDIEVDEYLAARGSQSS
                     MRIALSLFASGMGVWILFGPSEVGYWGGFWDVVGYALSSATPFLLLAYVGPKIRSSLP
                     DGVTLADYVRARLGRTMQIYVGIISILYMFTFLFAEFTAIGKASSILGGLDPLIPMIL
                     IAAATASYTALGGLPASLATDRIQALTVIALLTGLGILLMAQMFSDGLDEWINQAKAF
                     NPEDEWSIGSMSYMDSFASGLALIIAITAAEMFSQGNWQRTHASESPEALQRGALIAS
                     MMVFPLVLIMGILGTVVAGRGAPMFGDVYDPSAAFFILIADAGTLILILFLVLAVALV
                     CSSADTLLNAITASVTRDLSDGRMNLSQARIVTIGLMPVAVYLATGPTVLGFTFDASS
                     VFGIFLFADLLAAATVAPVLLTLWNRITSEGALAGAISGFLGVILYGTYTEDYMKGIE
                     YIYKPVNEYGLANLNVFLSALIASGIVTILVSIATASEPGLTTTEEE"
     regulatory      complement(25941..26040)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(26095..27345)
                     /locus_tag="HA345_00440"
     CDS             complement(26095..27345)
                     /locus_tag="HA345_00440"
                     /inference="COORDINATES: protein motif:HMM:NF014081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HIH83854.1"
                     /translation="MEPRRITSTRLVTEGGRVHRGDVLLHSDGSWSESHGDEDVIETI
                     DGSNRVITRSFQNWHTHLPMVLNRSMGEGLPLMEWLQTSIFPTERHVTKELIEVGTRA
                     AIAELIATGTTFACDMYHHPDAIAPVVAESGIRGIVCGPTTDWPPSSEDMSDSGNALK
                     MLETLLSDGSLANGRVQYGVAAHAVYTCSEETLLRAAELGRRYSAPVHIHTSETRQEV
                     ANCHAEHGMYPVEYLDSIGFLEEGTVCAHCGWVTKKEMRILAEKKCHAVHCPISNQKL
                     ACGGTMSYPAMKDANVDVRLGTDGAASNNSLDMRAEAKAASLIQRHDHWDARILDPIE
                     TWQLATKGSKDWITWDLNDVRLRPTGRDDRRLLANLIYSGGRVLDVFVDGEPIRRDGV
                     TLTIDELASLEALEDSAREYYSHI"
     gene            complement(27384..28109)
                     /locus_tag="HA345_00445"
     CDS             complement(27384..28109)
                     /locus_tag="HA345_00445"
                     /inference="COORDINATES: protein motif:HMM:TIGR00266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HIH83855.1"
                     /translation="MQNHIEFDPEFALLTVSVDPGETIRAESGAMVSMAGVEMETKSG
                     GLFKALKRKIFGGESIFQNYFTGGPQGGWVMIAPGTPGTIVTSDLQPGKAMFLQSGAY
                     LASTPNVEMSTKFQGAKGLFSGESIFFLRCYTEETPGTLHFNSYGAIKQIDVQPGQEI
                     TVDTGHVVAFEEGLEYRVTKAGSLKSSILGGEGLVMIFSGQGRLYTQTRNAQGLANVL
                     APFIPTSNSGGSGAFNIAESFLG"
     gene            complement(28130..28819)
                     /locus_tag="HA345_00450"
     CDS             complement(28130..28819)
                     /locus_tag="HA345_00450"
                     /inference="COORDINATES: protein motif:HMM:TIGR00266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00266 family protein"
                     /protein_id="HIH83856.1"
                     /translation="MQEHLEFDPSYTLLTLACSPGEAVNVEPGAMVSMAGMQMQTKSS
                     GGFFKGLKKMALGGESFFLNTFTAGAQGGWISLAPGAPGDIKHRDIQPGRQVFIQGGS
                     YLASTPNVQTDTKFQGFKGMFSGESVFFIRAFTEDGQAGRAWFNSFGAIKEIPIQPGQ
                     VITVDTGHVVAFDDTVTYEIGKVGGMKSLFLGGEGLVMHFSGQGSVWIQTRNVGSLAS
                     KLIPFLPSRGN"
     gene            28899..29795
                     /locus_tag="HA345_00455"
     CDS             28899..29795
                     /locus_tag="HA345_00455"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012451.1,HMM:NF013705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HIH83857.1"
                     /translation="MDGRDPYQVLGVERSASDAEIKRAFRRLARQHHPDRNPGDPAAE
                     ERFKSIQSAYDFIGSPQKRREHDQAEQFARFTGSGPGPRGLDDLLRQMMRGGAQEPPR
                     EPPKRGIDIELGIDVSSSLAESGGKIPFELSRLRRCKRCDGNTFRTGSNCAVCNGRGV
                     HRRESTVTVTIPSKVAHGHRLRLRGLGNEHPMGTPGDLILMVRVDPGEGRRWESERLV
                     QTLHVPYTAMLLGGNVEFNTPSGRTIRMQIDAGSQPGDRRRIPSEGWQGGPLDLELAI
                     EDVGELTQEMIEALENLRNLGL"
     gene            29874..33140
                     /locus_tag="HA345_00460"
     CDS             29874..33140
                     /locus_tag="HA345_00460"
                     /inference="COORDINATES: protein motif:HMM:NF015155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HIH83858.1"
                     /translation="MSGFSVFAESLFHRRRMAHLFIALMTLLVLPGLPVSLTPADIES
                     YDLESPELDAARVIQDEFTGNGVIVGFIFTVTESTLIQDTTGPLDPNTMQSYPGIAEG
                     IQSPDGGILNLTVLQELDRKAKVAKEHDTADYYGPLVSDITGTPVDGVLSLPDNFRSF
                     MNNETLLTQPSKEADGIFIVDVPPETNWTDCGELECLTFDDSNITQAHIDMAAHRMAN
                     HSKGAFLRWLSNDRAFIPDSDSPVIGPVNGTLDGEDWVDAEWLPGRWSAGSAWLLIQY
                     DREKMLANGWTFSWSDAEQDWGYAVSGLGFEADPPSLTTDLCLNRINDGEDPCSSEWL
                     YLDLERLIRDEDRFTSTLLIGESPNVEVNRELLSSAWLIVLMGVAIMILLWFSLRRWS
                     DVGIVGLGLVLSLVWMQGSIGLLILFGDRTGFEVIERSQFSNLLPILILALGIDDSLH
                     ALHRYKEERRRGGTSETAAMISLNRVGRAIMLTSLTTVAAFMANMFSGIPALRSFGLE
                     AALGVMAAFILTGLWVPLLRLDVDRWLRDRGRLQSEPTDLIRLVPQSWLASTARISGA
                     WAPAVVLLTVLVTAIATPAMMNLEGDFQVEDFLDDESNFALGVLLVNERFAEEGEPAE
                     ILVEGDLTNPDVLYAVKELRYNMNTLSPEDPDRFAREPSGAVELLAIDELLEYAQFAL
                     WYNSTPFEATGWNTSLPENGVDCPYRGSTQLFVNFEDRGCITYFFGHMYLHGIPESGG
                     YPMIPASIVSNFIQPSQPLDPSQPWLDLDGNNATFDRMVLRFGLRQPEQFDQVELAIA
                     ELHRDLAPLQNLSATPLRERVDRDTANESYPITWTIETGSPITRYVQASRMQEELQGS
                     LGLGVLFCLVTLWWGFRSSENRGGWVRDLISVPDRKLRALIGPMGMLLFAGGIISLGV
                     FLDSIPFEVAIALGIFALIIEPIWGGEALSLALLTTGPILIVVVWLYGAIAWFGYGLN
                     MVTVAIATMSLGVGIDYVIHVVERFREERLNGLDTLPALSAVGAASGIALVGSALSDI
                     TGFIVISRSSMGFFSTFGLFSALMISLSLIASLILAPAALRFVAYLDSTRSVEGLESE
                     "
     gene            33157..33477
                     /locus_tag="HA345_00465"
     CDS             33157..33477
                     /locus_tag="HA345_00465"
                     /inference="COORDINATES: protein motif:HMM:NF017922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF971 domain-containing protein"
                     /protein_id="HIH83859.1"
                     /translation="MADRLKELERADNSITLRYVDGDELTLPYHELRAWCPCAKCRPR
                     WKDPHRRLGLAEEVKRLRIEMPKAEAVGRYAVRFTWTSGCSSGLWSFEHITDIALNRL
                     DVDH"
     gene            33559..34971
                     /locus_tag="HA345_00470"
     CDS             33559..34971
                     /locus_tag="HA345_00470"
                     /inference="COORDINATES: protein motif:HMM:TIGR01213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(54/55) synthase Pus10"
                     /protein_id="HIH83860.1"
                     /translation="MTDDDQDEWLDYASAGYGGAIDPWEDLVPVDDSEVSEDDLEDED
                     DFEDDTPALRDMEAPPCPAPMGIRHVIRLGACDHCLARIGGRLNEGGVPAKEHGARIR
                     VDAIERDSMLSEISPDYCPFCEDLFDDIQNIVVRILRETEGVEFNTLQMGHHISKELV
                     EEEDYLRKRFGARGAPPLKASFAAAVEIALKEKVADVELVKEVPDVMILVDSLTLRVK
                     AEVRPVFLYGRYRKMSREVPQTRWPCRACKGREGGCPSCEMTGLQYLHSVQDLVGEPI
                     RKLLEAEDTSFHGMGREDIDVRCLGRGRPFVIEVKRPKKRAPDIEGLLTSIAEGAEGL
                     VEVDELRPSTRPEVARIKETKAEKSYRIRFAIEGDPLDQEDAEQRIHALSGVMLEQRT
                     PKRVAHRRSDLVRKRELVSIENVIVEDNEIQFDVRCQTGTYVKEMVHSDDGRTTPSVA
                     EVLERACEVLWLDVLEIHAE"
     gene            35059..35349
                     /locus_tag="HA345_00475"
     CDS             35059..35349
                     /locus_tag="HA345_00475"
                     /inference="COORDINATES: protein motif:HMM:NF003303.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21e"
                     /protein_id="HIH83861.1"
                     /translation="MRRTHGTRQGTRRILKRSKSERGRVNISRVMHPYTEGDRVSIVL
                     DGGQQAGMPHRRFQGMTGTIVAKQGRAYVVEFTDKNKNKSVLARPEHLRPTE"
     gene            35355..35705
                     /locus_tag="HA345_00480"
     CDS             35355..35705
                     /locus_tag="HA345_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83862.1"
                     /translation="MSEKKYIDFATVRDLLQAANDSREEQSREQQMAMEHAEWAASTN
                     RGGNATSSKVHSQLHEALADVESIADNDFVRSKIAEIRPQTPAEIRVIVAPFRIQVSE
                     SDIEIIITHVKQTI"
     gene            35762..36292
                     /locus_tag="HA345_00485"
     CDS             35762..36292
                     /locus_tag="HA345_00485"
                     /inference="COORDINATES: protein motif:HMM:NF016787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HIH83863.1"
                     /translation="MQPTPGGPDLSGEWVIRIIDGSPQGVAPGVTHAITENGLYLVRY
                     RGGSAGEKITVTDGEGIVGMLRHRDLSGTTQGDLVSTLTEIIRSNPDVFMMFYNRGGP
                     INRKMHAFQLLTGVGPSKAQDMVKKRGRAGWADFDAVDESAGFDTAEALAIRLAEELG
                     DPGMLPNILNMLIRAG"
     gene            36301..37197
                     /gene="rsmA"
                     /locus_tag="HA345_00490"
     CDS             36301..37197
                     /gene="rsmA"
                     /locus_tag="HA345_00490"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal RNA small subunit methyltransferase A"
                     /protein_id="HIH83864.1"
                     /translation="MDDVDARLLIDLLLDRRRVDRDLGQHYLHDETALYSAIEMCAEV
                     NQPLGPDSRVLEIGPGPGSLTLHLLSTAASVIGIEIEEEAINHLNRNFTQEIESGRLE
                     LIEGDALTVKWPDVTHIVANIPYQISSPLIDRIRNQPGAKSVTCVVLLLQQEFAHRLA
                     MHGGPDSVGPLGLNTALDWDVNLGPVVPPHCFVPSPRVHSQLACLVPRKEALPANLNH
                     RLHRLIVKHVFAQRRRKVRSMLRSNPKRISRIPGWYRERWSNAIDSVLEATEIDVESR
                     PDLLSPEDWIHLTIEIEAFEPD"
     gene            37313..38398
                     /locus_tag="HA345_00495"
     CDS             37313..38398
                     /locus_tag="HA345_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83865.1"
                     /translation="MAKKDTYLALLRRGIDENTADILSDAGLKIGEIKKLTQEQLEQN
                     YGLKPEIAQGVVTAVQSGPREAGRQRFLAEVLAEKKEMDRIDEQRFKRQQKDVIAEIN
                     ENRERRRTARLEQFRAQKTIMNRLGKTIELIVKIETNHDNETKDEQRNKLRDQLETRG
                     LEAARDHEMLELVGTPQDIVDFRRKIVPSIIFHACPECNEELEPAGGNRNLEDSDKFS
                     FICWDCGHQFTAPMAVIVEGSLESNSITISPDTPPRMPHYDPPMPDRAPSVADMLRAD
                     LEATGASADEAVAAVEESSIAGGLMSIDEWIDQTLAVHGYIQAQEHREDFIISTGAGA
                     TKFNKWMKKAGLYFNKQTGRWTRWEDR"
     gene            38408..38701
                     /locus_tag="HA345_00500"
     CDS             38408..38701
                     /locus_tag="HA345_00500"
                     /inference="COORDINATES: protein motif:HMM:NF012339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster binding
                     domain-containing protein"
                     /protein_id="HIH83866.1"
                     /translation="MSKPVVRFRRASLPLATIEVENHETLLEAACKAGLEVPSSCTSG
                     TCGTCMMRLVSGEVDGLDPLPPGLDEDIVADGAILTCIGRAVSSCVIDVIPPL"
     gene            38712..38861
                     /locus_tag="HA345_00505"
     CDS             38712..38861
                     /locus_tag="HA345_00505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83867.1"
                     /translation="MEPLLIAFLIFDVIALGIALWWLGSRVRSKFDEVEERHRRRWEH
                     DSVDD"
     gene            complement(38872..39159)
                     /locus_tag="HA345_00510"
     CDS             complement(38872..39159)
                     /locus_tag="HA345_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83868.1"
                     /translation="MSMRQKRLQRRVLNIIRGWNDAHGTPLQSLIEGMDISDDSNITL
                     HVSPSRPHCPCCLYDLQDLRARLIETKGVAGVRLEIVGIPDASRWTRTLNE"
     gene            complement(39176..39970)
                     /locus_tag="HA345_00515"
     CDS             complement(39176..39970)
                     /locus_tag="HA345_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83869.1"
                     /translation="MAKPWAPSHIAEVAKGLGIDLRIGGDVKTALVPILETELRRITK
                     EMEDKTLEADPERKTLGDPSRTRLGFNRTKGMMSDNLRRVDSVAAAATVSANERLEAH
                     LLRLLRIAAQVAARERVGTIKERHLEKALEQMGIGDTDAPVDESPTPMEADPIAEAIQ
                     PGTGEALSPAILRDMSRRFGGLPLDNEALEELILVYYDHAAEIQLDLQENLNTPGRVI
                     DTLDRFQTLAMLGWMRRMLRHAGERAREQNARKISLEHIVHIDPWE"
     gene            complement(40024..41247)
                     /locus_tag="HA345_00520"
     CDS             complement(40024..41247)
                     /locus_tag="HA345_00520"
                     /inference="COORDINATES: protein motif:HMM:NF012766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HIH83870.1"
                     /translation="MWNPENLVGPDGEDWRVPPSELELRQQQLVKQMVEDGFDSIWIN
                     DPVDLYWIVGNRQAGGVHIRSNGEIIQYVRSSLKRAIHESGGNDAPHRVEAHPRMAAL
                     ADTLATTPALQLGRMPANNATFMQEQIGDGGDCTRLLWSMRETKTEWEIDRMRECGRI
                     QRRMFEAIDELGSAFGEGITEIELAAAADEVSRAEGFGGMIRMRKWPMDCDRVVIASG
                     VSGAIPSYFDSAIGGSGSHPMAALGAGHRRIQKGEPILVDIVHVHRGYITDMTRMFSV
                     GEPETIWKERLEQMEEIAAKVRNVLSQGDTCEMAWEVGQGMAKNMGYDEHLMGMPPEQ
                     ARFLGHSIGLELDETPVVAEGFDTPLEIRGTMAIEPKVIYSEGAVGIEDCWVRAEDCM
                     ECLSSGETFPSWSIW"
     gene            41342..>41839
                     /locus_tag="HA345_00525"
     CDS             41342..>41839
                     /locus_tag="HA345_00525"
                     /inference="COORDINATES: protein motif:HMM:NF012389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HIH83871.1"
                     /translation="MAGVLTLDMARLTGKVVLVRVDINSPLHPETKVFLDDSRLRAIL
                     PTLKQLADSKIVLLAHQSRPGLSDFTDMSSHADLLGRLLGRHIHFVPDVCGDVALDEI
                     RSMNQGDMILLDNVRGWPEENDLKKADFDVLHESEIVQRLSSVADAYVTDAFAAAHRN
                     SPTLSG"
BASE COUNT        10276 a         9903 c        10737 g        10923 t
ORIGIN      
        1 gagtgtcgga aggtgatgag accaacaatg tcgaagtagg gaattcgctc tacatcgcgg
       61 ttccagatta tgatttggag gcaacctcga tttcagttga ttccggctat cgtcaagttt
      121 gcgaaggtgc ggatatttac atcacattga gtgtgaccaa tttgggtact gataatgcgg
      181 gatctcacta ttatgaagcc ctagtttcga ctggtaattc agtttcggca atctatactg
      241 gcacctctct tggatatgcg agtggaaccg caaatgtccc ttcctatacg cactcaagta
      301 ttcaggcaac cctaccgacg actatcacgc caggcacata ctatgtcggc atctacgtgg
      361 attatggaga ctacatttca gaatccgatg aaaacaacaa cattgccgtc acaaacagtt
      421 cccaattgac tgtaatcgat tgtggccctg atctggagcc cacgtctata tctggaccgg
      481 catcaggtgt tcggggtgga acagcacaag tttccgttca aatttcaaac actggaatgg
      541 aggatgtcgc cagtgtcgat tacagcatct atctttccac ggattcttca atcagtggaa
      601 ccggcaacga tatactggtc ggttcagatg tggccggtac cattgcacaa agtagtgcat
      661 ggtcaggatc agtcaacctt ggtatcccat ccaatatcgg agacggttgt tggtattggg
      721 gcattcttgt tgatccaaac aactcgattg tagagatgga tgaaacgaac aatgccatgc
      781 catcaagtgg gcagttctgt atagagcaag cggatattgt aattgattca ataggctatt
      841 ccaacaatgc tgtgagcggc caatcgagca ctgtattcat caatgtcagc aatattggtg
      901 gttctgatgc accttctttt actgcccgtc tgttgttatc gattgatgcc cagtcaggaa
      961 ccgatgatac acaagtggac agtttccggg tcgacccgtt aaccagtggt tcttcggtaa
     1021 atattgtacg gaatatcatt atccccggtc agcatattgg agattttcac tgggttgtta
     1081 ttgtcgacac agcatctgag atcgaagagg acgatgagtc gaacaatgca gctgcaagca
     1141 ctgctttcac gatttcagca ccagcccgcg accttctagc cgcatgggtt gaatctccac
     1201 tttcggccga acctggtcaa acggtctcga ttgaatgggg ggccgaaaac ttagggcaag
     1261 aacccctcgg tttcgacatc gagatttggc tttctgaaga tcgtacattg ggaagtggag
     1321 acatccgcct ttcacaatct cgagttccag cactaccgag tggttcaacc atcgccgatt
     1381 cacaagtagt caatttggtt ggcgatatag atggtgtttg gtgggttgtt ctagtcattg
     1441 attctggagg tgagcactat gaggatgatg aagcaaacaa tattcgtata tctaattcaa
     1501 cattcgtgat tgattcaagc agccccccac cagcaggcga tacactctct ggatgtgata
     1561 atccgcagac cgatggtcgc tttgaatcgg atgcagcgtc gacacgttcg tcagcgcatc
     1621 acttgggcgc gaatgccaac ctcacgttgg atggttgcct catcggttta gacgtggtcg
     1681 attggtatgc gattgtcatt gattcaggaa accgaacatc ggttgcattg agtgctgaag
     1741 gtgcacatct agaggtcact gtactgaatg gttcgggtgc acttgggcaa gaaatagtcg
     1801 atgatgaggt tcgttgggtg acaatttcag cattgaacga tgatattgat ggcgttgggc
     1861 tgttgtacca cattcgagtt acttgggatc cagcgatgcc gggcggccct tatcaattga
     1921 gattcgtcac ggcaaatgca agtattgaaa cagatttgac cccccctcca gcacctcaaa
     1981 tcatctcgat ggatgaatgg aaatacgctg atgaacttac gatttattgg caacctgttg
     2041 ttgatgacct gtctggaatt tcatactatg aagtccgatg ggcgggcggt ttgtgggctc
     2101 ctgtcacaca aaatgaatcg atagtgaatc tgacgatgtt catggatggt cggtattcgt
     2161 ttgaggttcg agctgttgac gaagcaggaa acataggacc tgctaatgca acttggattc
     2221 gtgttgatcg aaacgtaccg ctggtttcca ttgagcaggt caatgcctca cgctcaccag
     2281 tatccaaatt ggttgttgag ctgacgattg atgatgggct tggtagtgga ccatcaaaca
     2341 ttgaatggtc tgacaataat ttgacttgga atacgcatag ggaagatggt ttgattttgt
     2401 ggcgggattg gaacaacaca gaattgtttg ttcgggtgac ggatggggca aatttgcaga
     2461 cagttttgaa atttcaaatc gaagtacctc cagatgaatc agaaaacatc gaaacattgg
     2521 acaatgaaaa ttcaggattg aaaggaagct ggggagtcag cacattgctt actctgattt
     2581 ttgctctggt catcgtagcc atatcgattt ttacagtcat gcttgcgatt cgattacgag
     2641 cacaaggcct taccgatgaa gatgcggaag aagcttcaga agatgaatca aacgattcag
     2701 aattggcgcg caccaatcaa caagccgaaa ctttgcatgt cccagattac aaccatctca
     2761 tccctggtgg ggtgtacgat cagtccacag gacacacggt ttacattgac ccggagggtc
     2821 gttggtggtg gcagcaggaa gatggttcat tcttccatga tcaggcattc aatgccaacg
     2881 ataccacgcc ggatgccctt ccttagattg attggctttc tggttcttga ttcaatgcat
     2941 ttcgcagacg aaccatatat tcgcccccag aggcgacagt gaggaatgtt gccaacatca
     3001 tcatccagaa gcagatgtct gcgtaaacca tgtctgccat agaagcgcca tggacagcga
     3061 atccaccgaa aatcatcaag atagctatcg tttgactggc tgtcttacct ttgcctagag
     3121 ggctagcaga gaaatctatg tcttgaacct ccgcgtatcc acggaaaccg gtgattagca
     3181 cttctctcgc aagaatcaga accactgccc acgatggaat gagagcagag gtccatggcg
     3241 atgccgccat tagaataagc attgattgaa tgagaatctt gtcaattagt gggtcgatca
     3301 tacgtccgaa aacagtgacg ctgtcgagac gtctggcgag atacccgtcg agcacatctg
     3361 tagccattcc tattccgaat acagcgagaa cagcccacca tgcccaagat tcaggaaact
     3421 caaacccgtc gaaccatagg aggtagaata cgagaataag ggggattgct cccaatctcg
     3481 acatactgac gatgttaggc catgggctga tgacgcgctc ttcgtccatg aggggacgtc
     3541 ccaactgtcg tgaaaggttc ttccggctaa aacggggggt ttcagaacta accgatggat
     3601 gacacgaggg gcgtcaagtt catgtcgggt caagtgccaa gttcggattg ggtccagtca
     3661 tggcgagaat caagtccctc ggtcttgtcc ttatgtttgt cctaatgtca atgaccggtt
     3721 tcgcgtctct ggtcgcagca tctggggtga cagattctga tttacaggca caaaacatct
     3781 cggtgtcttg ggacccgacg tacgagttca ctcgtattca atgggataat ttggatacta
     3841 gcgattttca agtgatgaat gacctccaag ttgccaccta tcgagtatac cgatcggata
     3901 tgccaatcac cacccctgat attgagaacg gtaatctaac tcattttgct agtattccag
     3961 cctgtgaggc agagtggagc gtaggtaatt gtaggaacca ggctcgctca gtcatccacc
     4021 ttacctcgca tagcaatgtg gggagttatc actatgctgt aacaacaatt cttgggaacg
     4081 gcacagaggc tgcatttgtt gagatgaacg tctctcagaa ctacgaggct gtgaatgaaa
     4141 cctctcatgc gattacttct gtattcaatc tcaatgcgac ttatgatggt gtaaatcaac
     4201 aaacagtcct cgaatgggaa aatacagtac cggtcttctt cccgggccag ttagttgaaa
     4261 ccggagagaa cgcttacacg attcgaatct acgagcaccc aatcccggcg aacagaacga
     4321 attgggatca aatcaaccct actcttgtcg ctcaggatat tccagcaggg actagttcct
     4381 acagccttag tgtccctagt ggtgtcgacc gtaatgtgta ctatacagcg acaattgtcg
     4441 atcagggctt cgaagatttt cgtttcctta cacagaacag tattctaagt ccagttcgcg
     4501 aggattctcg cgccccatca cctgcaatgg aagttgcagc ctccttctca gcaatccctg
     4561 agactggatt tggtacaacc actatcgttt ggggtgatga tccgattgag gatgggaacg
     4621 agaggtatcg aatctggcgt agtccaactc catttggaca gaatatttca ggagcgcaac
     4681 tcattggaga ggtatctgca ggtgaagaga tgtttggata cactatacaa caaggtgtcc
     4741 ttgctgagtc ctattatgcc gttactgtgg cagattggat tggcaatcat gacggcctcc
     4801 tatcatccgg atcaacttca acgttgatat tcgaagacac cttcaatccg tggattgcag
     4861 aaccgactaa tgtgactgca gtgtatgaca acggtatgac tacaatcaca tggaatgatc
     4921 agatgggcgc cgaaggtgag aattatcacg tataccgttc agtcgggtct cgattgactt
     4981 ctgcatcgga tctcgtgaat gattcgaata tcgatttagt agctacagtc ccagatggtg
     5041 ttcaaacaac agaggcttca gttccagaaa atgtctacca gaatacatac tactgtgtta
     5101 cgagcgaagc ccgttacggc tacattaacg gtacttacga agatacgcgt ttcattcaga
     5161 attgctcaga cgctatcctt gaagatacac aggcccctcg tgctccacaa atgtcatctc
     5221 cgctgttaga agtgatggcg gatccgaagt ttgctctcgt aacttggctc aatgatttcg
     5281 aagaggtgga cgaaacatac ggcctctggg tccattctgg aaatccatgg ggtatcgaga
     5341 attgggaaga tgaactggta ctgactacta atgctacagc cgaaaatggg tggactcttc
     5401 ttgagacaat tgccgagcca tcagcgagta ccacacagat gtatcgtagc attgcagttg
     5461 atgatgacgt agatcgatat cgctggtatg ctgtgactca aactgatcag tggggcaatg
     5521 aaaacacgat tgtgtctaac gaattcaacg catggttagt tcatgaagac acaactgcac
     5581 ccactgcagt cattaccgtt gagggagagg atgacaatga tgagaacttc attgcagagg
     5641 cactgactca gggtgattac caactcctct tcaaagtaaa cgaggatctc ggcgaggatc
     5701 cgattatcaa tgttacaaca actggtgggc attccttcac tgaggaagga ggcctagttc
     5761 gtgctgagaa ggtacctggt aaggctgata cttaccgact tcgaatgacg gtaccttctg
     5821 gattggtcaa tagtgatctt cgtgttgaat atactctggt tgatgtcgct ggaaacaccc
     5881 gaactgaggt tactcttggt tggcctattg atgtcgagga cccagatatt cagatgtatt
     5941 cccccggccc ggatagcact tacctctacg gcgaatatgt tcgaattcac gggagtgtaa
     6001 cagatgacgt aggtgtcgat tatgtcagaa ttaagtttga gaaaggtctt gatcagacgt
     6061 caattctccg cacggaatgg ttcaacgtca cagatattac tgcagtcgat gatggtggca
     6121 agaccttcgt attcgaatat ctggatcctg ctgcctcctg gccagagaag ggccgtcaac
     6181 gcttgattgt tgaagcaggg gattctgctg gaaatgtcga agagatacgt attacgttca
     6241 tcgtggatct ttgtcagaga tccacttctg gatacaccgt ttgtgcgaca gaggttgcag
     6301 atatgcaggt tcctgatgat gacggtgata acgttcctaa cgatgcagat agttgtccga
     6361 cgactcctcc gaacacagag gtagattctg cgacaggatg tgtatctcca ggtatgttct
     6421 ctggaacgtt ccttctcgtc tatgtgatgg gtggattgaa tctgatcctt ctccttgctg
     6481 caattgttgc tgcttcgatg gctaatgcaa acccttcgag aaagcggcgt ggtgatgagg
     6541 aggacatgct cgacgaagac gattggatgg ctgacttcat gggaggaggc gaaggcggct
     6601 cagccgacga tgtccgcgca gatctcggtt ctctcaatga gaagtcagaa gaaaaagagg
     6661 agaagtccga agataagcaa gtcgaagagg acgatgacct cttccaggaa aaggttgcac
     6721 gtccgaagag gcgcaccaag cggaaggtca aggatgatga cgatgatgat gacgatgacg
     6781 atgagggtgg cgcacgtcct agtgtccgac gtcgctctgt gcgccgtcgc tcatcgtgag
     6841 gcgtggtcac atgttcggga tggacgaccc ggccaaggtt gtcgtccaga ttcgtagtta
     6901 tattggggaa ggtcgctacg aaattgctga ggtaatggct caggagttat ctacacattt
     6961 acttcattca aagcgagata ttcaccttga tgcagtcctt gttacagccc tccgagaatg
     7021 ggtccgaatc ctacatctca gaggacaata ctcagaggca cattctgcag cacgacgttt
     7081 ggcgaaggcc cgcaaggttc gcctcaaaca gattgcttcg tcaggagata gagacgcttg
     7141 gtccgatgag aaacaactcg aagttgaaga tctcatactc catgggagaa tagagtctga
     7201 aaggggccgt ttacggagtt caattagccg attcaataag gcaattcgaa ttaatggaaa
     7261 tcatcttgaa gcccgtcttt ccaagcttgg atctagatgg cgaattcaag ggtctctgaa
     7321 gggtggaaag cgagatgctt tgcaacttct tgatgctctc gagcgaagtt caggtgtgga
     7381 gcgtattggt ggcgtcatgg gcatgcggaa tggcgacggg acattggtaa gcctcgatcg
     7441 gattcagagt atcttgaatg gtgtagttga cccctcattg ggtttgaaca aaggaatcaa
     7501 cgagcgtgca aagtcctgtt tggttagaat taatgctgaa actgcacaga ttgaagctgg
     7561 cgaacgagaa gcagatgctc gacttgcagc agcaatagat tccttgcagc cctcgatgga
     7621 ctaccattcg tattcgacgt cctaatcaag acgctggacc tttgtactgg agccatttcc
     7681 tgcatgttgg acaccatgtc catcggttac cattttccac tgcttcttgt gcaacaccat
     7741 tgcattcagg acatcgttcg atttcttgga ttggagtccc tgattctgaa gtacttttct
     7801 cctttttacg aataatttgg aaacctgcac ctgcaatcat gaggagtccg agaataatta
     7861 caatcatcag gctcccccaa atctgcggct cgctttgatc ctcttgattc tcattttcat
     7921 ctgaaatact gttttcatcg ttagatgtga ctgggcatcc tccgtttgca gataagccag
     7981 gttcacttgg acaaaggtcg tcttgatcaa gaataccatc gccatcattg tcaatatcag
     8041 aatttgtttg actcacgttc gagttcgaat ccgtgttgtt ttcctgtggt tcaggaacgt
     8101 ctggtgcagc acatacgagg gaattcgttg aatcatgatc atatggaatg tctgttgcac
     8161 ttgagggaac gcatccatca tcatcggggt catgccaggc caatcgatca aatggaaatt
     8221 tgtcacctat ttcgatcaag agaccggtgg cagggtctac tgtgtaggaa taattgtctc
     8281 ctataccatc accgtcaagg tcatgacatt ggagaggatt atttgggaac gcatcaccat
     8341 ttgctggcac acggtaaccg agatcatcga ttgaataggt gtaattgtca ccacatccat
     8401 ctccatctcg atctgtgatt tgtgtcgaat cgttaggaaa ggcgtctcca ttgtcaattc
     8461 tcattccgtt acttccaacc gtgaatgagt gtgcatcacc cactccatca ccatcagtat
     8521 ccaaccattg gtatggatca tctaggaagg catcggcaag tccgagagga tgtgctaacc
     8581 aacttggagt cggatcagac ctaccatcgc catccgtatc gatacaaccg tatcgatcct
     8641 cgtaggaatt acctggttga tcaggacatg aatctggttg gttacccgca ggattgtctc
     8701 caaactcatc cccgtccaaa tcagaatact gggttgaatc tgtcggaaac gcgtcgtcat
     8761 cgtcaggtac tccatcctga tcaatatcag atacgaatcg tactatactt ccagtatggt
     8821 tcactaagat cacgtttcta tcgtgatcta gttcgatacc tcttgggatt ccgatggtgt
     8881 tcatcgaggt gatcagattg ctcgttgtta agtcaaaaat ctggatacgt cctgtagatg
     8941 aggtggctga atccccagat ccaacgatga tacgggggcc ttgggaatca agtgcgaagt
     9001 cgaagatttc tttcgcagca ttgatttctg tgacgaggac ctgttgtgta gaatcataca
     9061 tcttgatttt tgcatcccat cctccagtaa caagcacagg atattcgttg aaccactggt
     9121 tcgctcccga gtagttctcg tgactatagg cgataccatt gtctgtccac atcattgggt
     9181 caggatcaat ggtatcccaa gtcctaacct gtccactttg actaacagaa ctcattattt
     9241 cttgattcgg cccaaaggcg atggtccaat agacctcatc gtaattccat tgacggaggg
     9301 attgtccgga tgaactcgaa agaatctcaa ctactccgtc tgcactggtg ttcgtcgcat
     9361 tctccccgta ggtcgcaacg atgagttcag tagattggta acggactctc cccatcactt
     9421 ctaagctgcc ttggctggag aggtcatttt gtagaacatt ctttccttgt tcgtcgcagg
     9481 caacaataat cccgtcactg aatccgatta gaacagattc atcatcaccc caatcaacac
     9541 tctttgcata tggaatatca tccagaggta cgccatggtc tggatggaag cattgtcgct
     9601 ctattcctcc agtagtgaga tttcgaacac tcatcgttcc cgatgaatca gccatagcta
     9661 ggagattgaa tcgtggatgc attgacactt cacgcgtgag gtggttaccg agaacaccca
     9721 caagttcagg tgttgaagca ggaccattcc aaatttcgat gcttccatct cggcctgcag
     9781 acgccatcat acccccagta gatacagaga catcgaggac atctgctggc aatcctgacc
     9841 ctgcagagat cgtgctatgc caccctagat cgttgagaat ggtacctatc tgatcaataa
     9901 tcatcattcg tcctggatca tgaagcccaa ctacaagggc atcaccaatt tggctccatt
     9961 cgagagatga tacatcctgg ggaataggag tataccaatc gattgttcca tcattatgtc
    10021 tgaagtgggt gacgactccc tcacttggtc gattccaacc aatggtgtac cccattccgt
    10081 tgggttccca gtcgattgcc catgcagtag cttctccacc gccgattgct ctgtcccata
    10141 ggggggatag gtcggggatg ttatgcgcca caacccggtc ttgattcacg atccccgagg
    10201 ggttccgtaa aacggttgta accatgctcc cgttaggaga gaaggaacag tcagttggtt
    10261 ggtcagaggt gtaaattgta gtgggtgtgc cttgccctcc agttagatag gaagtttcga
    10321 cactgacaat ttcaccaggg atattggggt catcgatttc accgcagata acaatccggc
    10381 ttcgatcatc tgatagatcc ataccccaga gaaacccgtc ttttgctcct gtgaaaccct
    10441 tcgaccaaga catctgatga ccgttggacg agttcattgg ccacgcttct ccattgtctt
    10501 caatctcaaa aaccacaaga tcatcgtctg aatccgcaat taccacatgg tcattatcga
    10561 gccagatgac atcgacaagc ggatctggat gttcggcagt catgatattg cgtccatcag
    10621 tgatattcca gaccattagc cagcgttggt tgatgtcaac agctgcgata tgttcctcat
    10681 tgggagagaa atctagtgcc cacaaagcac cattcgtctg cggaatccag agatctgctt
    10741 gtagccctcc acctcctgga gggtgaacat ttctagtcca ttgtagaggc tgaacattgt
    10801 gttgtttcgt atcaacttca ttgagaggtg ttgcatatgg ttcgaccatc atcatcaagc
    10861 tggggaggat gaacagcaag agtaaggacc atgtgagccc ggtccgacac ctgcagcgaa
    10921 gcatggcccc catctaggct acactggctt gactgtttgc ttcacaggtg tccggtgata
    10981 tgcagaggcc tcagaaacgc gatgcagcaa gcaattgagg acgatacggt tatgatggct
    11041 gcgagcacgc tgcacgcatg cgccacataa tcgaccgtgt tttagagctt caagaagaca
    11101 cacctgaagc gcaacagacg ccctctccag gcgagcaaga tctcgttgat cttctgaaga
    11161 ccttacaacc tcgaatcagg gtcttcggat gtggtggatg cggcaataat accgtatctc
    11221 gcctctctga tgaaggcctc cttgatgatg aatacgtagt agggtgggcc atcaacacgg
    11281 atgctcagca tcttctcaag gtcaatgcag aacacaagat gctaattggt cgtacagccc
    11341 gtggaagagg cgcaggagga gaccctgaga tgggtgagaa ggctgcttta gagtcagagc
    11401 gaaatcttac agaatccgtc aatgattgtg atcttgcctt tgtgactgct ggactgggcg
    11461 gaggcacagg tacgggaagt gctcatgtca tcgctcgttt ggcaaaggcg gcaggtgcgc
    11521 tcaccattgg tgtagtcaca tatccattta cttccgaagg aactcagagg cggcagaatg
    11581 ctgactgggg actacaacgc ttgcgtgagg tttgtgatac cgttgttgta cttcccaatg
    11641 accgtctact cgaggttaat ggtgtccgtg atcttcccat tggggctgcc ttccgtgtcg
    11701 cggatgagtt actaatgcgt tctatagccg gtgttactga attaatctca aaggagggtc
    11761 ttgtgaacct cgacttcgag gatctccgtt cagtcatggt caatggtgga ggtacagcga
    11821 tgattggcta tggcgagggt cgcggcccag atcgcgccga gtacgcaact cgtcaggctc
    11881 tcgaatctcc tcttctagat atcgatgtgt cagatgcacg tggagccttg gtcaacgttg
    11941 ttgctggaaa gaatctcaca ttgggagagg cagagatgtg tgcacagatt attcgcgaga
    12001 gtatcaatcc ccacgcacgc ataatctggg gtgcaacggt ggatgaatct atggaagaag
    12061 agctccgtgt tctcattgtt ctaaccggtg taagaagcga acaaattcat ggtgcatcac
    12121 tccagaaccg ttctcagggc attcgttcac ggtccgcgac attcatcaca tgaatgcctt
    12181 tgttcgttcc gtcgtgctta aatggaacac ggaagtcgca tcgaaggctg aggttgtacc
    12241 atgtccgatg aaggcgatgg ctcgaatggt atcgaacaac gagcgcaagc catgcaggac
    12301 gaaatcgaat catggttcag gcgacgccag agaggtgact gggcgcgcat catcaagatg
    12361 gcacgtaagc catcaaagac tgaatttcgc cagacagtaa ttgtttgtgg aattggtatg
    12421 tttgtacttg gtgcaatcgg attcggagtc ctatggctaa tggacaacct ccttccttct
    12481 ttcttcgact ggttgacctc tcccacagag agcgtccagt ttgagccata atgaggtgat
    12541 ttgagttgtc caatgcattc gtagttttcc tccgtaatga agagaaggtg cttatcctaa
    12601 agcgctcaga tgccgttagc gagtttgctc tcgcctggga tggtatcttt ggtgttgggg
    12661 atgcagaaga cctgagtgtt gttttcaacc gggttacaga agctacaggt ctttcgagtg
    12721 agtcactgaa gcatattcgg acgggtactg ctcgcggtat cgcattcggt aatcgtttga
    12781 ctgatgttac tccaatcctt gtcgaatctt ctgaaacgat ggttaatcca gcggcccttt
    12841 actctcaggc agagtggatt gatccaggtg atatgcgcaa ggagaacgaa agcgatcgat
    12901 acaccatacc atctctcgtc gaaatgtatg gagatgtggg aacgtacctc tacattctca
    12961 agacatccat cggtcaggaa gctaatgcag ccaatgagat acgtgcgcgc ctaagtggca
    13021 ctggttctct agcagaaact gtggatgaga ttcatgccgt tctccagtca gatcacatgc
    13081 gtggctacat cttcgtcgaa gcgtctgctc aacaccatgt tgagaaaatc atcggtcgtg
    13141 ccggcaaccg aactacaccg atgaagaatg tgagaaaggt cctcgatggt gaggcgccat
    13201 tccgcgatat cttccctcat cttgaaccca aggcagcaac agctggtatt tcggagggtg
    13261 acgttgtcga agttcgtgtg ggcgccttca agggtcaacg tgcacgcgtt actaacatct
    13321 cagacactaa ggaggaaatc accgttgagt tgtttgatgc aatggttcct atccctctca
    13381 ctgtccgtgg cgatcaggtt cgcgtgaccc agagggtcga gtgagtaatt cggttcgatt
    13441 aaatagagga agcaagtcgg cgcgatgcta ggaggtgatt agaggatgtc tgcacgcaac
    13501 gagacacctc atgtcatcaa ccagactctt ggtgttgcta agtgcaacgg gagttgggaa
    13561 gcggcgacgg agaatctgac aatggatcag atcaaggagg tcgctaacaa gcaacaggac
    13621 cgcctcaccg gtgctacact ctttgcgcgc tgtcgcgaag ttatgggtac ttgtgtcgct
    13681 atgcgtgtga aggtggaagg actcgagccc aaagaggcat tgaaacagat gaaggagggg
    13741 gcgttcgaag cgcactttgc ctaagtctgt cacgcagtac gggagagggg ccagccctcg
    13801 tagaccgtgg aggtgatgac gaatgagaga aatgattcaa caagcaattc aacaggccct
    13861 cgatgaggca cctgagcgta agttcgtcga aactattgag attgcgttca ctatcaagga
    13921 tgttgatctc aagaacccat ctaacagaat tcaggaagaa attcgcctcc cgaatggtcg
    13981 tggaaaggac atctcgattg cgatgtttgc ttctggagag atggctacga aggccaaaga
    14041 tgcaggagtc catgttatcg atccgactac gattgaggat cttggtagca accgtcaacg
    14101 tgctcgcaag attgccaagc aatacgactt cttcctttca gaagtcccgc atatgggaaa
    14161 tgtcggtcgg tatctaggac aggtccttgg cccccgtgga aagatgccac gtcccgttcc
    14221 accagtcatg gacattggag ctctttcttc cggccttcgg acgacgacct ctattcgatc
    14281 tcgtgacaag attacattcc atggtgcagt tggctcacgt tctcagtccg ttgaggaatt
    14341 gaccgataac acgatggcgg tttggacgcg tgtcgtagga aagctcgaac gtggaaccaa
    14401 caatctccgt tcctgttaca tcaagacctc tatgggtcca tctatcaagg tggaggtggt
    14461 caattgattc caaaggcagc agaatggaag aaggatcgcg tctctgttct tcaggatgtt
    14521 ttgacaaagc ctggtattgt cggcattgtc gatattgcag gcgtacctgc tacgaatatg
    14581 cttgacatgc gcgcgaatct tcgtgatggt atgactgcta taatggccaa gaagaccttg
    14641 attcgtcgtg cttggagtgg agcaggtctt gtggagaacg atctagagat cctcctcgat
    14701 ggtgtcgttc agcctatgct cgtccacact gatcagtaca atgcattcca gctttctgat
    14761 gaattaaaca agacccgcca aggtcgtgct gcgaaggatg gagaacttgc tccagaggac
    14821 atagtcgttg agcagggtga gaccgaattc gctccagggc caattgttgg tgagttggga
    14881 gctgtaggaa ttccagcaaa gatcgacaaa ggtaaggttg tgattcagaa gactaccaca
    14941 gttgttgaag ctggtcaggc aatcgaagga gatctaggta tgatactctc caaactcggt
    15001 atcaatccaa ttgagattgg tctgattctt tctggtgttc ttgaagaagg aacggtcatg
    15061 ccatctcaat cactcaatat cgattacgat gcgttccgca cagatgtcat tacggcgaca
    15121 tcaggtgcat tcaatctcgc ttgtaacatc tcatggtttg cttctgagac catgccgacc
    15181 ttgcttgcca aggcgagcgg tgaagcattc aacgtcgcta ttgaagcggg catctccaat
    15241 gagaagacac tcccgatctt catgtctcgc gcacactcgc gcgcattggc ccttgcgggc
    15301 catcttgatt cctctgccct ggacgaagaa ctcgccggga tgctcggtgc tgcagctcaa
    15361 acggccgcag ctacaactga gtctaccggt gaggaagctg ctcctgcagc tgaagaatcc
    15421 gaggtagagg aagaagagga ggaagacggc ggctttggcg gcctcggaga tctcttcggt
    15481 tgaaacaaaa aagaaggtga aaaaaaatgg aatacgtata cgctgctatg ttgctacatt
    15541 cggctgagaa agaaattgat gacaagaccg tcacagctgt tctaacagct gctggtgtgg
    15601 atgctgataa agcaagagtg aaggctcttg tgcaatcctt gtctagtgtt gacatcggtg
    15661 atgcaatggc tacggctgtt gctgctccgg tggctgctgc tgcgccagct gctagtggcg
    15721 gtgctggtgc acctgctgct gcagaagaag cgcctgctgc agaggaagaa gcggaagacg
    15781 atggcggcgg ttttggcggc ctcggcgacc tcttcggctg atctcgccgt agacatccta
    15841 gagccccgtc ttagacgggt tggttcgaga ataacccggc cgttcggcta tccggacgga
    15901 cgccgcagag cagatcaccc cctctgtgtt cgggtataat tcccgaagtg atgatgtggc
    15961 aatacctctt ctccaatctg tggaacacgc cacagtgcat gagattccgg tttgtgtcgg
    16021 ccccgtcgat accgttcgag ccttccgctt agctgcagaa tctgcgggtt ggcgtgtagt
    16081 tcggcacgaa ggtaaacgac cagtacaccg aatggcgatt atcatcccac ttcagcaatc
    16141 agctcgtact tttggaattc taattgatga tggacctttg gaaggtgctg ctatgcaggc
    16201 ctggtctcac acacctggtt cagcaggcga aattaccact actgaatggg tattgccaga
    16261 tgttatcgat cacgaaatgt ggccttcatt cattcgtgcg tgggcccgtg aacttcctcg
    16321 gatgccgaat cgatggacat tcggtgaacg aagtcgtatt gggtattttt taccagagta
    16381 tgggcgttca cgtcgtcgat taaaggcgtg gggattggat cctaaggtga aacgggtcga
    16441 ggatatcgat ctcaattggc cctctatatc atctgaggag tcagaataat tacagcggga
    16501 cattgaagaa caggaatcca ttgttgtatt ttgtggacat gcaggaattc ttccaagatc
    16561 gtcgcaatca agcgatgttc ggtggttcag ttctgttcat gctaatcttc cccatctact
    16621 tcgctctcgt tccaagtctc gttggtctcg atggcgcggg tgcaagcgat tcgtccggca
    16681 cttgggctgt ttccttcacg gaggaatcct tcattcagat agaagatggc gtaataatca
    16741 acgaaggcga aacttacgat tccaatttca tgctcactga ggaaatgata ggtgagaacc
    16801 gaaatgtggc ttcggtaact atcgaagtta gttgcaatga caacgatgat gttccaccaa
    16861 cattcaacga tggtggctct ggagaatcag atcttgcagg agtaactggg gaacttcagg
    16921 accaatcagc ctccgggaat tgtggaggcg gtaatgcctt ctccatgact tggaacatca
    16981 ttgaaggata cgatggggct ccttacgagg tcgaaggtaa gatgtcagat atcattacac
    17041 agtggtccga caatgaaagt gctcgtgggg attggctcgt tggaatcaca gcagatatta
    17101 attcgaatcc attgcagttc ctcgctccag atgacagtga ggattacgac atcacgtgga
    17161 ccgcactcgt cttcgaaatg tcgatggaac ctgtgctgaa cattgacgat cctactaccg
    17221 agtgattacg tctttgcgtg aattttcaca acgtcattgt ctgctagttc gtgatccgct
    17281 ccaattactc gaccggtacg cgcatcagtg gcgcggatga aaccgtcacc gagatcggtg
    17341 tgaaccgcgt aggcgagatc ctttgctgtt gcaccttgtt ttacgagtag agcatcagga
    17401 agtatgcgcc cttcaccatc aagccatttt gactcgtctt gtacaggata cgctacgata
    17461 cgatctagcc gattgaagac aacggcagat agtaaggcaa caacccctgt tccatcaaga
    17521 atctcaactc gcttctgtag agcgtcgagt cctttacgct gcgcatcatt gattttcgcc
    17581 tcttcacgga tcgagaaacg attgtctccg ggttggtaat ttatcgcgtt agcctttgat
    17641 gctcgacgga gagcgagttc tgtttctgcc gatgtggctc gaataaggcc ccccttgctc
    17701 tcgatagttt cctgaagtga taaccaggtt tggggttcgg tgaggtccgc cttgttcgct
    17761 gcgatatgga ctggaaatag cgcctgacgg aatctcgaag ctagattgcg tacagtatct
    17821 tctggccaag accatgggac agggaggtca ggatgatcag aggtgaaggc gttcagggtc
    17881 tgaaccacaa tggattcggt agctcctagt ccgctcaact gatcatgtac gtatcgaatt
    17941 agtgcatttt gaccttcagc ttgagccctc cttgctcctc tagaccatga agtagccaga
    18001 atgttggcaa tccatgcatc tagttcaccg atgagaaatt catgttcttc gagaggatca
    18061 caggctcctt ctccagaggg attaccttcg agatcagtag tgcctgaagc atccactacc
    18121 tggattagcg cgtcacaatt ggcgagatcc gataggaatt gattgcctct tcctcgtcca
    18181 ctatgtgctc ctggaacaag gcctgctaca tcgacaagag ttacgggaac aatgcggcga
    18241 tatccaatac atgagccgga acgaggtgtg cagacacttc cttcacgtga cacatctgat
    18301 tcaagggggc gaccaacatc ctcggctttg ttgacaagtt ccttacaggc acaatcggat
    18361 tccagtggta gccatgcgac accgacattc gcttcaatcg tagtgaaggg gtagtttgca
    18421 atctcaaccg aagtttcggt taatgctgcg aatgtagtcg actttccgac attcggttta
    18481 cccactaaac cgatcttcat gggttctgtt cactcctctt cagagaggtg tgttgggcct
    18541 acgtgatcat catcatcgga actatcctct ggagagatca ttgtgtcgag ccttacacca
    18601 gcggtgagaa ggtcacgcac ggttgtggga ccagctagta cgtagttctg aggaccgagg
    18661 atatcgaagt cgacttcgag tgtgcctgct ggtgctcccg tagtggaact tcggattaca
    18721 ttctgagtga tgaacaagac accgataaca gcgccataga acaggaccga cgcgattggc
    18781 attagttcac ttgccgtgct gctaacggcc ccttcaatct cagcctcagc cataatcatc
    18841 gcttcggcaa aggaaatgtt cgcgaagtcg gctgctaagg agaatacaaa agcgccaatt
    18901 acgcctacag cgaggaagta agttgctcgg cgcccttctg actggctatc gagctcacgg
    18961 cccgtgatat cgggcaagat ggcaaggata ccaccgagaa cgagcgggat gtaagcgccc
    19021 cactgtgagc ctagacggac tgtggagatt gcagttgcaa gttcaccaga acctgaaatc
    19081 gagtctaacg ttgtgaatag tgaagcaata gcaaagatag gcgtcatgag tgcaccgaag
    19141 gcaatcattg tcagggccgt gtcttcaaac agggcgccac ttcgacggat tgcggtgagt
    19201 acgttccctg caaacatgaa tgcgacaggg atggacagtg ccatgagggc tgataggaaa
    19261 agggtcccgg tgcaggaggc ttctgtacca catgcggcga ggcttaaccc tccagtcaca
    19321 ccgtgttcta gtggaccaag agcgatctca gcaaatccta gcattgcagg gtcgtaaccg
    19381 ttgggtgaca ccgttagaat ggtaccaatt agagtcaagc caatcagcga acgacttggt
    19441 agaggttctc cagttcttgc aggaactgcg tagtacacta gtccgaaggc tgcaccaccg
    19501 aagtagatgc cgtgttggag gaggagcatc atccaaagag tggttgatgc attacctggt
    19561 ccattcacaa taaacccaat ctgtgcagca aagtaaccaa tcaaaccgaa aaggaagaac
    19621 cactgtggaa tctcaatgcg tccttcttgc tctcgaacgg tgagtaggac attagcgatg
    19681 attgccactg cggcgaatgc aacgagtgca ttcccgccga aggcaatgag gttcccgata
    19741 tcgttaccga actgtgtgcc tatgattgcg gtgagtacac ccatggaggt tactattgcc
    19801 attagaccag cattcccctc ggatgcgagg gaatgattcg ccaatcgtgg aataatgtgg
    19861 agtgctgcac cgatgagcat catgtggatt ccacctgcga aggtagcaaa gacagatgga
    19921 acgaaagcag agtcaccagt aatatcccaa ctccatgact gaaggctgta gaggtcgttg
    19981 ggagaatggc caagccaaag atcaacgaat gtaatactag ctccaacaaa gagccagatg
    20041 agcccatgat gaatccaact tgaggaggca cttcctgatc gcccttcgag caaggtagca
    20101 ccagggccga gtgccttgcc cagcatgaat ccagtcatgc ctgccagcgc atcaccgacg
    20161 aatcccatgc cgttgcgtag gagccatgcg aagaggatta gtaatcccca gaagattagc
    20221 atcatctgaa tgattgtatc cattgtatca cctcagtcct gtaccgcctt gaacaaaatg
    20281 ttcgccaaga gggagaagaa acctagcatg attccaagga caaagaacca gatgctgctg
    20341 tccatcacac ctgtcacaag aggaactaaa tcactgatta ctggaagacc atgtccaggg
    20401 aatagtactt cgtagagaac cagaaaaaga agtagagaga ccgctccgaa accggccatt
    20461 gttcttccta gttcaggctc ctcatcagag cgcatgtaat caagcaggcc atatccgccg
    20521 tcgtcttcca ttgaataggt ccccagggaa tcacccacag ttgggcattc ttggccacca
    20581 ttctgccgcc cttaagcgtt gggcgatatc tatgttccaa agaggatgaa ggtttccgtt
    20641 tatggtgctc gaaggatgtc ggctacaggg gctctccggt ctcgtccaat tcccattgga
    20701 gtggggagtg attggtcaag tttgatttcg gtacgccaat gagtgcgaca ttcgcaatca
    20761 atgccttcga attctcgtaa atcagcggag acactgtacc tttcaatggc tgctgcggct
    20821 tccttatcac aggacccaca gttgtgtgat cctcgaatca ttccagcagc agtagggtgg
    20881 acaatgacgc gcgtcccagt tcccgccttt tctgccgaaa ctggttgaac gtcatcatgc
    20941 acgtcctcga tgagctgaat aaggctccag agccaaggcg gccggtactg tcgagcgcga
    21001 tgaatgcggt ctacgattgt cttcttctgt atgttcatcg ggttgattga gatttcatcg
    21061 gataaggggg caacagatcg aatccatttt ccggtctgag cgattgcatc cccttcactc
    21121 ataaatggag gtttgaatag aagatatgtc ttcactctta gtccatattt gcgcaagttg
    21181 tctacagcgc ggtgccattg ttttgtgttg aatcctttgt tgcaatggaa tcggaggaca
    21241 ttatcatcgt aggcttccaa acctattgcg atagtgcatc ctggatgttt ttctgcaacc
    21301 catcgaattt tttcctcttt gcaaagatgt gcttgcgctt cgataatcag gtgcaatccc
    21361 ctttcgtaag tttctcgaag aacagcttct tgccaatcag ctggattttc tcgatcttca
    21421 aagaatgttc cagaagtgta gaccttaacc attttacaat cttcaaaatc attggtccgt
    21481 cgttttgctt cttcccattg agcatgcaaa tcctcacttg tgacatcatc tcgtacatcg
    21541 ttgaagtatc cgcagaaagt gcaaccactt ttccaccacc attcacagcc tctagttcgg
    21601 agaataacag tggcggctgt gcacggggtg ccatcgggga gccgctctgg agtagtgtag
    21661 acagtggccg gtctggaagc atcccaagat tcacgaattc gaattgattc gggtgtgttt
    21721 tctggtgctt tcactagatg atggattttg accgctcggt catcggtacc aagaagtccc
    21781 ccagccatcg tttctcggaa ggcgtttgag tgataggtat ttgcatagat gagctaacat
    21841 catacggttg tatgttgata tgctgatggc tctctgcgac tagtatggcc ggtgttgttt
    21901 cgtcaacaga atcgacagaa ggggtagatg tttctgcgat actcaatgag atgtctccta
    21961 aagagaagaa ggcgctcaag ggttggtatc tttatgattt cgcgaatcag gcgtttgctc
    22021 ttacagtagt gactgtagtt gcaccaatgc taactgccag tttattcaat actgcaacag
    22081 gtgggggtac tgagttcttt ggtgcaaaca tcacgggtgc ttcctactat tctctcgttc
    22141 tcacagcttc cagtttattc attgcacttt gcagtccaat cttaggcgta attgcagatc
    22201 gtgtacctat caagaagaag attctgtggg tttacacgat tgtcggggtg atcttcactg
    22261 ctctcatggg actggccccc ttcatgggcg atacagccta tatctggcta gcgatattca
    22321 ttgtgattgg aaacatcggt ttcgcaggag ggaatgtgat ttactacgct ttcatgccat
    22381 atcttgctcc acgtgaagcg atggataggg tatcatcgat tggttatgta tacggatttg
    22441 gaggtggctg cctcatcctc attgtgcatc taattgtgtt gattggaccc cttccagaat
    22501 cagtatcact taacatgaaa atgtccttcg ttttcgttac ctcagcacta tggtggtttg
    22561 gttgggggat gccacttttc cgtaacacgc cggagcccga aattccaaat ccaactgaat
    22621 tcaatagtgt tggcgaagca atcaatgtag cagtgaaaca ggtcatgacg accttccgtg
    22681 agattcgaaa gtttcctgtc ctgtctctct ttttggtttc gtatctgtta ttctatgatg
    22741 gtgtgaacac tatcgctgca atggcaagtg catacggaga ttctgttcta cgtttacctc
    22801 ctcaggcggt gatgttcctc cttctaaccg ttaatctcgt tgcaattccg atgtcctata
    22861 tcggaggtcg agccgcggag cgattcggta ctaagaaagt ccttacttcc gctctaatgg
    22921 tctattgtgt cgctgccgtt cttgcaactg gatttgctcc tctaccgatg gaagataatc
    22981 atgaagtcca cgatttccaa ttcaatttcg atgagaataa cgacatttac gagattgttg
    23041 tgttatacga taaagaggcc tgttgcactg cgaactcatg gttttcacta aacggtgagg
    23101 gcgatgcatc attccgagat acttacttca catatcttac tgataccaca attgatggtg
    23161 cagattcaaa cacagattat actcgaaagt cattgacaat agaggaagcg tctcagatga
    23221 ctatgttgat ggtgaacaat acagatcaca gattctcttt ctcattcatt ggtggttcag
    23281 agaatggaaa gcagtcagta ggggataatc atccggccaa tttaggggat ggacccttgg
    23341 acggttgggc gatgttcatg cgggacaatc tctggggccc actaggtatg acggtcacat
    23401 tgcagtttgt cttcctaggg atgatggtgg gcatggtgat gggcactgcg ggtgctcaag
    23461 ctcgcagttt gttctctcta ctaattccaa ggacaaggac gacggaattc tttgggttct
    23521 ttgggttcat tggaaaggcg gcagccgtcg tcggtcccct tgtttatgcg atgacggtgg
    23581 cagtatccga tgaccgagtt gcaattctga caattgttgc agttatcctt gctggaaccg
    23641 ctcttttcac acgtgtagac attcagaaag gtattgcaga ggctgaagca gaagacgcga
    23701 gaaataagga caggtcgata gaggaagagt gatttcttgg gaactttcga tgtcgttcag
    23761 catgtgctta cgacattctt cttcgttctc gctgctattg tatggggtgt agcactaata
    23821 ccccccgttt atggcatgat attcctctgg atggagagtg cagattgggg tcctatagtt
    23881 cgatcaattg ctctaggtct tggagcagga ttgagttaca ttacatgggt tggtctacta
    23941 ctcattgagg tcggttttat tggagctatt ctaaggcctc gtctccctga ggggagggtt
    24001 ccattgagat catttacaac agtacgatgg gggatgcttg gagcccttca tagaatggca
    24061 atcaatcaac tgggcctggt agtcccctca tacattgggt cgttctatta tcgattaatg
    24121 ggatgcaagg taggcaaggg tgcgcaactg aattccactt ccatcaatga ctgttttatg
    24181 gttcacatag gggatcgaac tgtgattggt ggaggagcag caatcaacgg acatattgtc
    24241 gagaaaggcg aacttgttct atcgccgatc cggattggaa aggactgtgt tattggttca
    24301 ggttctttca tcaatccagg atgcacgatt ggggacggag ccgttcttgc ttctcgagca
    24361 gtgcttccta agtggacgga gattccaccc ggagaggttt gggcaggaat ccctgcctgc
    24421 cgtatccagt cgaggaatac tcctgaagaa gactgaatgc tcactcttct tcggtcgttg
    24481 tgagacctgg ctctgaagca gtagcaatcg atactagaat tgttactatg ccacttgcaa
    24541 ttagggcgga taggaataca ttcagatttg ctaatccgta ttcatttaca ggtttgtaga
    24601 tgtactcgat acccttcatg taatcctcag tgtatgttcc gtataggata acaccgagga
    24661 atccggaaat agcgcctgcg agtgcgcctt cagacgtgat tcgattccac agggtcagga
    24721 gaaccggtgc tacggtagct gcagctaata gatcagcgaa caggaagata ccaaacacac
    24781 tggatgcatc gaaggtaaat ccgagtacag ttggaccagt cgctaaatac acggcaaccg
    24841 gcatcaagcc gatggtaacg atacgagctt gggagaggtt catccgacca tctgaaaggt
    24901 cacgtgttac agatgctgta attgcattca acaaagtgtc tgcgctggaa catactaatg
    24961 ccactgcaag gacaaggaag aggattagga taagggtccc agcatctgca attaagatga
    25021 agaaagcagc ggatgggtcg tacacatccc cgaacatggg ggctcctctt ccggcaacaa
    25081 ctgttccgag gattcccatg atgagaacta gagggaagac catcattgag gcaatcaatg
    25141 caccccgttg caatgcttca ggtgactcag aagcatgagt gcgctgccag ttgccctgag
    25201 agaacatttc agcggcagtg attgctataa tcaaagctaa tccagatgca aaggaatcca
    25261 tgtagctcat gctacctata ctccattcat cctctggatt gaatgccttc gcttgattga
    25321 tccattcgtc aagtccatcg ctgaacatct gcgccatgag taggatgccc aaacctgtca
    25381 atagagcaat cacagtcaat gcctggattc tgtcggtcgc tagtgaagca ggtaaacccc
    25441 cgagagcggt atagcttgcg gttgcggccg caattagaat catagggatt agaggatcta
    25501 gtccaccaag aatcgaactt gcctttccaa tggctgtgaa ttcagcaaaa aggaaagtga
    25561 acatgtagag aatagatatg attccgacgt agatttgcat agttcgtcct agtcgagcac
    25621 gcacgtaatc tgccaatgta accccgtcag gaagtgatga acgaatctta ggtccgacat
    25681 aagctagcag aaggaatgga gtagcagaag agagagcata tcctacgacg tcccagaaac
    25741 cgccccaata gcctacttca cttggaccaa agagaatcca tactcccatg cctgaggcga
    25801 ataggctcag tgcaatacgc atcgaagatt gtgatccccg tgccgcaaga tattcatcga
    25861 cctcgatatc ttttccagat gcggcattgt atccgatata gccgaagagg ccaatcgtag
    25921 caatcaataa tccatatgca agtgttggtt ccatttcctc cctccgctgg aattacccag
    25981 atcaggtcgt gggtcgtcgc cgaagcaacc tctcagcaaa tagctcccca gtagttccct
    26041 ccctatttcg gcacttcttg aagattcctt atcggaagca acaacagtct cgagttagat
    26101 gtgagaatag tattctctag cgctgtcctc caacgcttcc aaggatgcta actcgtcgat
    26161 ggttagggta actccatcgc gccgaatagg ctcaccgtct acaaagacgt caaggacgcg
    26221 ccccccactg tagattagat tagcgagaag tcgtcgatca tcacgcccag tgggacgaag
    26281 tcgaacatcg ttcaaatccc atgtaatcca atccttactt ccctttgtgg cgagttgcca
    26341 tgtctcgatg ggatcgagga ttcgggcatc ccagtggtca tgccgttgaa ttagactggc
    26401 ggctttagct tcagcacgca tgtctaatga gttgttacta gctgcaccat cggtcccaag
    26461 tcgaacatcc acattggcat ccttcattgc aggataggac atcgtgccac cacaggctaa
    26521 cttctgattg ctgatagggc aatgaacagc atggcatttt ttctcagcaa gaattcgcat
    26581 ctctttcttc gtaacccatc cacagtgtgc acatactgtc ccctcttcta ggaatcctat
    26641 ggagtcgagg tattctactg gatacatgcc atgttctgca tggcagtttg caacttcctg
    26701 tcttgtttcg ctggtgtgta tgtggaccgg tgctgagtat cgacgtccga gttctgctgc
    26761 acggagcaac gtctcttcgg aacaggtgta gacggcgtgt gcggcaacac cgtattgaac
    26821 gcggccgttg gctagagaac catcagagag cagggtctcc agcatcttga gcgcattacc
    26881 actatctgac atatcttctg atgagggggg ccaatcagtt gttggaccac atacaattcc
    26941 tcgaatccca ctttctgcta cgactggcgc gatggcatca ggatggtggt acatgtcaca
    27001 agcgaaggtt gtcccagttg cgattaattc agcaattgca gctcgcgtac caacctcgat
    27061 aagttccttg gtaacatgcc gctcagttgg aaaaatcgat gtctgtaacc attccatcaa
    27121 tggtaacccc tctcccatgc tacgattgag gaccattggc aggtgagtat gccagttctg
    27181 aaatgagcgt gtgattacac gatttgaacc atcaatagtc tcgatgacat cctcatcacc
    27241 atggctctct gaccatgatc catcactgtg aaggaggaca tcgcctcgat ggacacgccc
    27301 accttcagta acgaggcgag tcgaggtgat acgcctcggt tccatggacc gaggaagaat
    27361 cggtcggact tgagtatgtg gtctcaaccg aggaaacttt cggcgatatt gaaggcacca
    27421 gaaccgccgc tattactcgt tggaataaat ggtgcaagga cattagcaag gccctgtgca
    27481 ttacgggttt gcgtatacaa ccgtccctgg ccagagaata tcattaccaa tccttctcca
    27541 ccaagaatgg aggatttgag actccctgcc ttcgtgacgc gatattcaag cccttcttcg
    27601 aaggcaacta catgtcccgt gtcgactgtg atttcttgac caggttggac atcaatctgc
    27661 ttgattgccc cataggagtt gaagtgcaag gttccaggag tttcttctgt gtaacatcgg
    27721 aggaagaata tggattcccc tgagaagagc cctttagcac cctgaaactt tgtggacatc
    27781 tctacgtttg gtgtcgatgc aagataggcg ccggattgca aaaacattgc ttttcccggt
    27841 tgcaaatcgc tcgtaacaat cgttccaggg gttccaggcg caatcatgac ccaaccaccc
    27901 tgaggtccac ctgtgaagta gttctgaaag attgattcac cgccgaatat cttccgtttt
    27961 agcgctttga ataagccacc tgacttggtt tccatttcga ctcctgccat cgaaaccatc
    28021 gctcctgact cggcgcgtat tgtctcacct ggatctacag acactgtaag tagtgcaaat
    28081 tctgggtcga actctatgtg attctgcatt tatttcacct aggagtcaat cagttgccac
    28141 gggatggcag gaatgggatt aatttggaag caaggcttcc aacatttctt gtctgaatcc
    28201 agacactgcc ttgacctgaa aagtgcatta caagtccttc tccgcctagg aagagcgact
    28261 tcatgccgcc aactttccca atctcgtaag tcacagtgtc atcgaaagcg acgacatgac
    28321 ctgtatccac tgtaatgacc tgaccgggct gaataggaat ttccttgatt gccccaaagg
    28381 aattgaacca agcgcgtcca gcctgaccat cttctgtaaa ggcacgaatg aagaacactg
    28441 attcgccaga gaacatgccc ttgaatccct gaaatttcgt atcagtctgc acgtttggcg
    28501 tagaggcaag gtaagatccg ccctgaatga agacctgtcg tccaggttgg atatcgcggt
    28561 gtttaatgtc gcctggtgct ccaggagcga ggctaatcca gccaccctgt gcgccagctg
    28621 tgaaggtgtt gaggaagaat gactcgccac ctaacgccat cttcttgagt cccttgaaga
    28681 agcccccgct tgactttgtc tgcatctgca tgcctgccat agaaaccatt gctccaggtt
    28741 cgacatttac agcttcacct ggggaacagg cgagtgtcaa aagtgtgtag gagggatcaa
    28801 actcaaggtg ttcttgcatg acttggccat agttccctca gttatatcgg ttgggtctgt
    28861 gggttcttgt tgaaatggga cggttacttt ggcgttgtat ggatggtcgc gacccctatc
    28921 aggttctagg tgtcgagcgt tcggcttcag atgccgagat taagcgagca ttccgtcgtc
    28981 ttgcacggca acatcatccc gatcgaaacc caggagatcc agcggcagag gagcgcttca
    29041 aatccattca atcggcgtat gatttcatag gttctccgca gaagcggagg gaacacgatc
    29101 aggctgagca gtttgcaaga tttacaggaa gtggacctgg ccctagaggt ctcgatgacc
    29161 tcctccgtca gatgatgcgt ggtggggcgc aggagcctcc tcgagagcct ccgaaacgtg
    29221 gtattgacat cgaactaggc atcgatgtat cttcatcgtt agctgaatcc ggaggaaaaa
    29281 tacccttcga acttagtcgc ttacgtcgct gtaagaggtg cgatggtaac acctttcgaa
    29341 ccggttcgaa ttgtgcggta tgcaatggtc gtggtgtcca tcgccgggag agtaccgtca
    29401 ctgttacaat tccgtcgaag gttgctcatg ggcatcgtct gaggttacgc ggcttgggta
    29461 acgagcatcc aatgggtaca cctggcgatc taatactgat ggttagagtt gacccaggag
    29521 agggtcgaag atgggaatca gaacgcttgg tacagacgtt acatgttcct tacaccgcta
    29581 tgttacttgg aggaaatgtg gagttcaata caccatccgg ccgtaccatc cgtatgcaaa
    29641 ttgatgcggg gagccaacct ggagatcggc gaaggatacc tagtgaagga tggcaaggag
    29701 gccccctcga tcttgaacta gcgattgagg atgtgggtga attaacacaa gagatgatcg
    29761 aagcccttga gaatctccga aatttgggat tgtgaataca tactgttacg tccatcgttt
    29821 tcccttgtgg cctactaacg agtattcatc tatgggataa tcctgattga atcatgtcag
    29881 gattttcggt ctttgccgaa tccttatttc atcgtcggcg gatggcccat cttttcattg
    29941 cactgatgac attactcgtc cttccaggac ttccagtgag ccttactcct gcagacatcg
    30001 aatcttatga tcttgaatct ccagagttgg atgccgcccg cgttatccaa gatgaattca
    30061 cagggaatgg agtaattgta ggctttattt tcactgtgac tgaatcgacc ttaattcagg
    30121 atacaacagg gcccctcgac cctaatacaa tgcaatccta tccaggtatt gctgaaggga
    30181 tccagtcacc agatggagga attctgaatc ttactgtttt gcaggagctt gaccgaaaag
    30241 cgaaagttgc caaggagcat gatactgcgg actattacgg ccctctagtg tcagatatta
    30301 ctggcacccc tgtagacggt gtcctatccc ttccagataa ctttcgttca ttcatgaata
    30361 atgagactct cttgacccaa ccaagtaaag aggctgatgg gattttcatt gtggatgttc
    30421 cacccgagac aaattggaca gattgtggag aacttgaatg tctgacattc gatgactcta
    30481 acattacgca ggctcatatc gatatggctg ctcatcgaat ggctaatcat agcaaaggag
    30541 ccttcctacg ttggctctcc aatgaccgag ccttcattcc agattcggat tcacccgtca
    30601 tcggtcctgt aaatgggaca ttggatggag aagattgggt tgatgcggaa tggttgcctg
    30661 gtcgatggtc tgctggttcg gcttggctct taatccaata tgaccgagag aaaatgcttg
    30721 ctaatggttg gactttctca tggtccgatg cagaacaaga ctggggttat gcggtttctg
    30781 gcctcggttt tgaagcggat cccccgtctc ttactacgga cttatgtctc aatcgaatta
    30841 atgacggcga agatccgtgt tcttcagagt ggctctacct agatcttgaa cgtttgattc
    30901 gagacgaaga tcgtttcaca tctaccctcc taatcggtga atctcctaat gtcgaagtta
    30961 atcgtgaact cctctcaagt gcttggctca ttgtgctaat gggcgtagcc atcatgatcc
    31021 ttctctggtt cagccttcgt cgctggtcag atgtcggaat agtgggtctt ggtttagtac
    31081 tgagccttgt ttggatgcaa ggatccatcg gcctcctaat cttgtttggt gatagaactg
    31141 gattcgaagt gattgaacgt tctcaattct cgaatttgct ccctattctt attctcgctc
    31201 tcggtattga cgacagcctc catgcattac atcgatacaa ggaggaaagg cgtcgaggag
    31261 gtacctctga gacggctgcg atgatttcac tcaatcgggt cggtcgcgct attatgttga
    31321 cctccttgac cacagttgct gcgttcatgg cgaacatgtt ctcaggaatt ccagccctcc
    31381 gttccttcgg tcttgaggca gcacttggag tcatggcagc cttcattctg actggcttgt
    31441 gggttccgct acttcgtcta gatgtggacc gatggctacg tgatcgtggg cgccttcaat
    31501 ccgaaccgac agatctcatt cgtcttgttc ctcagtcgtg gttagcctct acggcccgaa
    31561 tctctggtgc ttgggccccg gctgtggttc tactcaccgt tcttgttact gcgattgcta
    31621 ctccagcaat gatgaatcta gagggtgatt tccaagttga ggacttcctc gatgatgaat
    31681 cgaatttcgc tctcggtgtt cttctcgtga atgagaggtt tgcagaggag ggtgaacctg
    31741 cggagattct tgttgagggc gacttgacca atccagatgt cctgtacgcg gtcaaggaac
    31801 tgagatacaa tatgaacacg ttgagccccg aagatccaga tcgtttcgca cgcgaaccgt
    31861 caggggcagt agagcttctc gctatcgatg aattgttgga atatgcccag ttcgcattgt
    31921 ggtacaattc tacacccttt gaggccacag gatggaatac ttcgctacct gagaatggtg
    31981 tcgattgccc ctaccgggga tcgacccaat tgttcgttaa tttcgaagat cgtgggtgta
    32041 ttacctactt ctttggccac atgtatctac atgggattcc agagagtggt ggatatccca
    32101 tgatccctgc gagcatcgta tcaaacttca ttcaaccgag ccaaccgttg gatccatctc
    32161 aaccgtggtt agatttggat ggtaacaacg caacttttga tcgcatggtg cttcgtttcg
    32221 gcttgcgtca gccagaacaa tttgatcagg ttgaattagc aattgcagaa ttgcatcgtg
    32281 atcttgcacc gttgcaaaac ctctcagcaa ctcccttacg ggagcgtgta gatcgagata
    32341 ctgccaatga gtcgtatcca atcacttgga caatagagac gggctcacca atcactcgtt
    32401 atgttcaggc ctcgcgtatg caagaagaac tccagggttc cctcggtcta ggggtactgt
    32461 tctgcttggt tactctctgg tggggattcc ggagttctga aaaccgtgga ggctgggttc
    32521 gtgatctcat cagtgtacct gatcgaaaac tccgtgctct cattggtccg atgggtatgc
    32581 ttctatttgc aggtggaata atttcgctcg gtgtattctt ggattccatt ccatttgagg
    32641 tagctattgc attgggcatc tttgccctga ttatcgaacc tatatggggg ggggaggctc
    32701 tgtcacttgc tcttctaaca acaggtccta ttctgatagt cgttgtttgg ttgtatggtg
    32761 ctattgcttg gtttggctat ggactgaaca tggtcaccgt cgctattgcg acgatgtctc
    32821 tcggcgtcgg aatcgattat gtcatccatg tcgttgaacg attcagagag gagcgtctga
    32881 acgggctgga tactctgccc gcactttcgg ctgttggtgc agcgagtgga attgccttag
    32941 tgggctctgc cctcagcgat attactggct tcatcgtaat atctcgatca tcgatgggct
    33001 tcttctcgac attcggtttg ttcagcgctc taatgatttc actatcactc atcgcgtcgc
    33061 ttatcctcgc cccggcggct ctacgtttcg tggcttacct tgattccaca cgttcggtcg
    33121 aagggttgga atcggaatag ggtgtgtgca tcatacatgg cagaccggtt gaaagaactc
    33181 gaacgtgcag acaattcgat tactttacgt tacgtcgatg gcgatgaact caccctccct
    33241 tatcacgaat tacgtgcatg gtgtccatgt gcgaagtgtc gtcctcgatg gaaggatcca
    33301 catcggagat tgggacttgc tgaggaggtc aaacgccttc ggattgagat gcctaaagcg
    33361 gaggcagttg gacgatatgc tgttcgattc acatggacca gcgggtgctc cagcggattg
    33421 tggtcttttg agcatataac agacatcgcc ctcaatcgat tagatgttga tcattgaagg
    33481 aagcctcaaa tcacaggatg cttgcgctct gattatccac cctgcgggtc tgtccacctg
    33541 tagtgcggag gcgatttgat gactgacgac gaccaggacg agtggttgga ctacgcttca
    33601 gccggttatg gcggggccat cgatccatgg gaggatttgg tccctgttga tgattcggaa
    33661 gtatcggagg atgacctcga agacgaggat gatttcgagg atgacactcc agcacttcgt
    33721 gacatggaag cgccaccatg ccctgctcct atggggattc gtcacgtaat tcgtcttggt
    33781 gcatgcgatc attgtcttgc tcgtatagga ggtcgtttga atgagggtgg agttcccgct
    33841 aaagaacacg gagcccgaat tcgtgtggac gctatcgagc gcgactcaat gctttccgaa
    33901 atcagtcctg attactgccc cttttgcgag gatctcttcg atgatattca gaacattgtt
    33961 gtgcgaattt tacgtgagac tgagggcgtg gaattcaaca cccttcagat gggccatcac
    34021 attagcaagg aattggtaga agaggaagat taccttcgga agcggtttgg tgcacgaggt
    34081 gcaccgcccc tcaaggcgtc ttttgcagca gctgtcgaaa tcgctctaaa ggagaaagta
    34141 gcggatgtcg aactggtcaa ggaggtcccg gatgtgatga tcttagtaga ttcactaacc
    34201 cttcgtgtga aggctgaggt gcgccctgtc ttcttgtatg ggaggtaccg caagatgtct
    34261 cgagaggtgc cccagactcg ttggccctgt cgagcttgta aggggcgtga aggtggctgc
    34321 ccttcctgtg aaatgacagg gttacagtac ctacattcag ttcaagacct agtcggagaa
    34381 cccattcgta agttactcga ggcggaggat actagttttc acggtatggg gcgcgaggat
    34441 atcgatgtgc gatgcttagg tcgaggacga ccatttgtca tcgaggttaa gcgcccgaag
    34501 aagagggcgc cagacattga aggcttactc acctcaattg cagagggtgc tgaaggcctt
    34561 gttgaggtcg atgaactgcg accatcgact cgccctgagg ttgctcgcat caaggagacg
    34621 aaggctgaga aatcctatcg catacgattt gcgattgaag gcgatccgtt agatcaggag
    34681 gatgccgagc agagaataca tgcgctgagt ggtgtgatgc ttgaacagag gacgccgaag
    34741 cgcgtcgcac atcgtcgctc agaccttgtc cgtaagcgtg aacttgtctc gatagagaac
    34801 gtcattgttg aggataacga gattcagttt gatgtccgtt gtcagacagg gacttacgtc
    34861 aaagagatgg ttcattcaga cgatggacgt accacgccct ctgtagctga ggttctagag
    34921 cgagcatgcg aggtcctttg gttggatgtc ctcgaaatcc atgcagagtg agatatgccc
    34981 attgaagaaa cggtttctgt cgtgcgacgg acttaagaat gcggcgtcgg tcgaccgaat
    35041 cccagaggag gcatagccat gcgtcgaaca cacggaaccc gtcaaggcac ccgtcgcatt
    35101 ctgaagcgtt ccaagagtga gcgtggacgc gtcaatatta gtcgcgtcat gcatccatat
    35161 actgaaggag accgcgtatc catcgttctt gatggtggtc agcaggcagg tatgccgcat
    35221 cgtcgcttcc aaggaatgac cggtacgatt gttgcaaagc aaggtcgtgc atatgttgtt
    35281 gagttcacag acaagaacaa gaacaagtca gtcctcgctc gacccgagca cttacgccca
    35341 acggaatgat atctatgtcg gaaaagaagt acatcgattt cgctaccgtc cgtgaccttc
    35401 ttcaggctgc gaacgattca cgcgaagagc agtctcgtga gcagcagatg gcaatggaac
    35461 atgctgagtg ggcagctagc actaatcgtg ggggaaatgc aacctcctcc aaggttcata
    35521 gtcaacttca cgaagccctc gctgatgtcg agagtatcgc agataatgat ttcgttcgat
    35581 ctaagattgc tgagattcgt ccgcagacgc ctgctgagat tcgtgtaatt gtggctccat
    35641 tccggattca agtcagcgaa tctgatattg agataatcat tacccacgtg aaacagacga
    35701 tttgatcctg tttcacagca caacacactt gagttggaac tgcattggag gtacgaggaa
    35761 catgcaacct acaccgggcg gtcccgacct gagcggggaa tgggtcattc gaattatcga
    35821 cggctctccc caaggtgttg ctccgggtgt aactcatgcg attactgaga acggcctcta
    35881 tctcgttcgg tatcgtggcg gtagtgctgg tgaaaaaatc actgttacag acggtgaagg
    35941 aatagttggc atgctccgcc atcgcgatct atcaggtacg acacaaggtg acctcgtgag
    36001 cactctaacc gagattatca ggtctaatcc tgatgtcttc atgatgttct acaatagggg
    36061 tggcccaatt aatcgtaaga tgcacgcatt ccaattactc actggcgtgg gcccttctaa
    36121 ggctcaggat atggtgaaga agcgtggccg agcaggctgg gccgacttcg atgctgtgga
    36181 tgaatctgca ggtttcgata ctgccgaggc tcttgcgatt cgcctcgctg aggagcttgg
    36241 tgatcccggc atgctcccga atattctcaa catgctcatc cgggctgggt gagcgttccc
    36301 atggatgacg tggacgcacg tctgttgatt gacctactac ttgaccgaag gagagtcgat
    36361 agggatcttg gccaacatta tctccatgat gagacggccc tttacagcgc aattgagatg
    36421 tgcgctgaag tgaatcagcc cctcggaccg gatagccgtg ttcttgagat cggtccaggt
    36481 ccaggttcgc taacgctgca tcttctttcg actgcagcat cagttattgg gattgagatt
    36541 gaggaggagg cgattaacca cctcaatcgc aatttcactc aggagattga atctggccgt
    36601 cttgaattaa ttgaagggga tgctctgact gtcaaatggc ccgatgtgac acatatcgtt
    36661 gcaaacatcc cataccaaat ctctagtcca cttatcgata gaattcgtaa ccaaccaggt
    36721 gctaaatcgg ttacttgcgt ggtccttctc cttcagcagg agtttgcaca taggctcgca
    36781 atgcatggtg gccctgactc tgtaggtcca cttggactca acacagccct cgattgggac
    36841 gttaatcttg gcccagttgt accgcctcat tgtttcgttc cgtccccacg tgtacattct
    36901 caacttgctt gtcttgtccc gaggaaagag gcattgcctg caaacctaaa ccatcgctta
    36961 catcgcctaa tcgtaaagca cgttttcgct caacgccgcc gcaaggtgag aagtatgctt
    37021 cgttctaatc caaagcgaat tagtcgaatt ccaggatggt accgcgaacg atggtcgaac
    37081 gcaattgatt cagtattaga ggcaactgaa atcgacgttg aatctagacc tgatcttctc
    37141 tcgccagagg attggattca tttgaccata gaaatcgagg ctttcgaacc cgattgaagc
    37201 ccatttttcg cgtcgggttg atagcgaaca ccggactcgg gtggaatgcg cggccgggat
    37261 tcgcgccaat gagtccatta aaacaaggtc gtgcgcgaaa gaaggtggga atatggcaaa
    37321 gaaggacaca tatctcgcgc ttctacgtcg cgggattgat gagaatacgg cagacatcct
    37381 ctcagatgca ggcctcaaga ttggagaaat caagaaactt actcaggaac aacttgagca
    37441 gaattatggc ctcaagccgg agattgctca gggtgtggtt acagcggtcc aatctggtcc
    37501 acgcgaagcc ggtcgtcagc gattccttgc agaagtcctc gctgagaaga aggaaatgga
    37561 tcgtatcgat gagcagcgat tcaagcgcca gcagaaggac gtcatcgcag aaattaatga
    37621 gaacagagaa cgacgccgga cggcgcgact agagcagttc cgtgcacaga agaccatcat
    37681 gaatcgtctg ggtaagacga ttgaactcat tgtgaagatt gagaccaatc atgacaacga
    37741 gaccaaggat gagcagcgga acaagcttcg agatcaactt gagacccgtg gacttgaagc
    37801 cgcccgtgat catgagatgt tggaacttgt tggaacgcca caagacattg tggatttccg
    37861 aagaaagatt gtcccctcta tcatttttca cgcctgccca gaatgcaatg aagagttaga
    37921 acctgcaggg ggtaaccgta acttagagga tagtgataaa ttctccttca tttgctggga
    37981 ttgtggtcat caattcacgg caccaatggc tgtgattgta gagggttctc ttgaatcaaa
    38041 ctcaatcact atctctccag acacaccccc gcgcatgcct cattatgatc cccctatgcc
    38101 tgatcgtgct ccctctgtgg ctgacatgct tcgtgctgat cttgaggcga ctggcgctag
    38161 cgcagatgag gcagttgcag cagttgaaga gtcctcaatt gctggtggtc taatgagcat
    38221 tgatgagtgg attgaccaga cgcttgcagt tcatggctac attcaggccc aggagcatcg
    38281 tgaagatttc atcatcagta ccggtgccgg tgcaactaag ttcaacaagt ggatgaagaa
    38341 ggcaggcctc tacttcaaca agcagactgg gcgttggacc cgttgggaag atcggtgagg
    38401 cgacccgatg tccaagccgg tggtccgttt ccggcgtgca tcccttccgt tggctactat
    38461 cgaggtggaa aaccacgaga cgcttctaga agctgcttgc aaagccggtc ttgaagttcc
    38521 ttcaagctgt acctctggaa cttgtggtac ttgcatgatg cgtcttgtaa gcggagaagt
    38581 ggatggtctt gatccacttc cacccggatt agatgaggac attgtagcag acggtgcaat
    38641 tttgacttgt attggacgtg ctgtctcatc atgtgtaatc gatgtaattc cgccgttgtg
    38701 agttgataat gatggaaccg ttactaatcg ccttcctcat tttcgatgta atcgcattag
    38761 gtattgctct ttggtggctg gggtctcggg tacgaagcaa gtttgacgag gtcgaggaac
    38821 ggcatcgtcg tcgttgggaa cacgattctg ttgatgacta ggtttcatcg gttattcatt
    38881 caatgtacgt gtccaacgag aagcatctgg gattccgacg atttcaagtc gaactccagc
    38941 aactcctttg gtttcgatta gccttgcacg tagatcttgt aggtcgtaga gacaacacgg
    39001 gcaatgtgga cgagatggac tgacatggag tgtgatgttg gaatcatcac taatgtccat
    39061 tccttcaatc aggctctgaa ggggtgttcc gtgtgcatcg ttccatccac ggatgatatt
    39121 gagaacccga cgttgcagtc gtttctgccg catcgacata tctcacagcc tctgtttatt
    39181 cccatggatc gatgtggaca atatgctcca aactgatttt tcgggcgttc tgttcccgtg
    39241 ctcgttcgcc tgcgtgacgt agcatacgtc gcatccatcc cagcatcgcg agtgtctgaa
    39301 agcggtcaag agtatcgatt actcggccag gagtgttcag attctcttga agatcgagtt
    39361 ggatttctgc tgcatgatca tagtagacca gaatcaactc ctcgagtgcc tcattgtcta
    39421 gaggaagccc cccaaatcta cgactcatgt ctcggagaat tgctggagaa agggcctctc
    39481 cagttcccgg ttggatggct tctgcgattg gatcagcctc cattggagtg ggactttcat
    39541 ctacgggcgc atctgtgtca ccaatcccca tttgttcaag cgccttctca agatgccgtt
    39601 ctttgattgt cccaacgcgt tcgcgtgccg ctacttgtgc tgctattcgg agcaggcgaa
    39661 gtaggtgtgc ttctaggcgc tcattggcag acactgtggc tgcagcagcg acggaatcaa
    39721 cccgacgtag attgtcactc atcatcccct tggttcgatt aaagccaaga cgggttcgac
    39781 ttggatcacc gagcgttttc ctttctggat ctgcttctag cgtcttatct tccatttctt
    39841 tcgttattcg tcggagttct gtctcaagga ttgggacgag tgcggtcttg acatcgccgc
    39901 caatccgaag gtcaatgccg agtcctttag cgacctcggc gatgtgtgat ggggcccaag
    39961 gtttcgccat gtcgtagagt catgaatcga ggcacttcaa gtatcgccat tctgattcaa
    40021 aggttaccat atggaccatg atggaaaagt ttcaccgctg gacagacatt ccatacaatc
    40081 ttcggcacgt acccaacaat cctctatccc tactgcccct tcagagtaga tcaccttcgg
    40141 ctcaattgcc atggtgcctc taatttctag tggggtatcg aatccctcag cgacgacagg
    40201 tgtctcatct agctctaacc cgatgctgtg acccaagaag cgagcctgct ctggaggcat
    40261 tcccattagg tgttcatcat accccatgtt cttcgccatt ccctgtccta cttcccaggc
    40321 catctcacag gtatcacctt gtgagagtac attgcgtacc tttgcagcga tttcttccat
    40381 ctgttcaagc cgctccttcc agattgtttc tggttcaccg acactgaaca ttcgcgtcat
    40441 atcggtaatg tatccacggt gcacatgtac aatatctacg agtataggtt ctcctttctg
    40501 tatacggcga tgcccggcac cgagggctgc catcggatga gaaccggatc ctccgattgc
    40561 gctgtcaaag tatgagggaa tcgcacccga gacaccgctt gcaatgacaa ctcgatcaca
    40621 atccattggc cactttcgca tacgaatcat gccaccgaat ccctcggctc ggctgacttc
    40681 atcggcagca gcagccaact caatctcagt gataccttct ccgaaggcgg agccgagctc
    40741 atcgatggct tcgaacatcc tgcgctgaat cctaccacat tcacgcatac ggtcaatttc
    40801 ccactctgtc ttggtttcac gcatactcca taggagtcga gtacaatctc ctccatcgcc
    40861 tatttgttcc tgcatgaatg tagcattgtt ggctggcatt cgtccaagtt gtagtgctgg
    40921 cgtggtagcg agagtgtctg ctaaagctgc cattcttgga tgtgcttcga ctcgatgtgg
    40981 agcatcgtta cctcctgatt cgtgaattgc ccgtttcaga gaggatcgaa cgtactggat
    41041 aatttccccg ttacttcgaa tatgaactcc tccagcctgg cgatttccca caatccaata
    41101 taggtcgact gggtcgttta tccagattga atcaaatccg tcctctacca tttgtttgac
    41161 aagttgttgt tgacgcaact ccaactctga agggggaaca cgccagtctt cgccgtctgg
    41221 gccgacaagg ttctctgggt tccacattgt ctggatggtt tggcttgagc accaaagcgg
    41281 ttcgccttga acctacatcg attgaacgaa accccatatg gggaacatct gtcggagttt
    41341 catggcgggc gtcctaacgc tcgatatggc tcggctcacc ggtaaggtcg tcctagttcg
    41401 cgtggacatc aattctcccc tccatcctga gaccaaagta ttcctcgatg atagtcggtt
    41461 gagagccatc ttgccgaccc ttaagcaact cgcagattct aagatagtgc ttctcgcaca
    41521 ccagagtcga ccagggctct cagacttcac cgacatgtca agccatgcag acctcttagg
    41581 tcgtctactt ggtcgtcaca tccatttcgt ccctgatgtc tgtggtgatg ttgcgttgga
    41641 tgaaattcgt tcgatgaatc agggtgatat gattctcctt gacaatgtgc gaggatggcc
    41701 ggaggaaaat gatctgaaga aggcagattt tgacgtcctt catgagtctg agatagttca
    41761 acgtctttca tcggttgcag atgcgtatgt cacagatgca tttgcagcag cacatcgaaa
    41821 ttcccccaca ctctctggt
//
LOCUS       DUKB01000011            2581 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_452984, whole genome shotgun sequence.
ACCESSION   DUKB01000011 DUKB01000000
VERSION     DUKB01000011.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2581)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_452984"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="HA345_00530"
     CDS             <1..388
                     /locus_tag="HA345_00530"
                     /inference="COORDINATES: protein motif:HMM:NF017536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HIH83872.1"
                     /translation="NGIWVRVIAGECLGLKSSIDTMVPIEYIHAKMDKNLLLEKEIES
                     SLNAMIYVFGGEISVENKIIKDGELALLSEGKRITIQSNEPSEFLILAGPELNEPIAR
                     HGPFVMNTREEIHQAFLDYQNGTFVN"
     gene            446..838
                     /locus_tag="HA345_00535"
     CDS             446..838
                     /locus_tag="HA345_00535"
                     /inference="COORDINATES: protein motif:HMM:NF014608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HIH83873.1"
                     /translation="MASRIEWTQGEEMLGITSDGKRVMMHTNDTASPMQLLILSHGAC
                     SMIDVVVGLKGRMENIQAAWVEVDVDRAESPPRRLTAVRMHYVIEGNVPEKLVERLIH
                     QSHEKYCSVGATILGGETSLDWTMEIRS"
     gene            complement(839..1279)
                     /locus_tag="HA345_00540"
     CDS             complement(839..1279)
                     /locus_tag="HA345_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83874.1"
                     /translation="MVHPYSIGLSYGWSDDALNEEGHNLLNQLANLLGIEDSMREMFE
                     MEHMETMPAISQGIGAGVSALRSYIQDLESWFPDEGEQHARHLGRSALDVGLTRSGWK
                     EAYAWMEGVGLGRAFAEGAWMEKEVARDCDLPEFFNHPKKLLGL"
     gene            complement(1285..1707)
                     /locus_tag="HA345_00545"
     CDS             complement(1285..1707)
                     /locus_tag="HA345_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83875.1"
                     /translation="MDGEDKEEEFGLPGASIESEDHSDVDPFEELGIGSRVNATSTEE
                     DGRRGYDALSNLVDDDEGLPDSDVAHGSLLEQDGFETKSSNESDVSKAEATYVMLLQT
                     VWVDGILDPAEVRLLAKKRSELGISFERHLKLVDDLLG"
     gene            1985..>2581
                     /locus_tag="HA345_00550"
     CDS             1985..>2581
                     /locus_tag="HA345_00550"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994019.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HIH83876.1"
                     /translation="MNIERRFTVLGVDPFDTFEWMTTSIQIKNQDGSVAHNMEEVCFP
                     VGFEGVPGTVAAQKYLRKAGVPAALRPVPEDNVPIWLQRSAPDEEKLQAMEPEDRYCA
                     ETDFRQMFRRLAGTWTYWGWKHGYFASEEDARSYFDEMCYMIASQRSAPNSPQWFNTG
                     LHWAYGIEGNPQGHKYVDPETGILTESTNSYEHPQPHAC"
BASE COUNT          728 a          619 c          570 g          664 t
ORIGIN      
        1 aaatggaatt tgggttaggg tgattgcagg cgaatgtcta ggtttgaaat catccattga
       61 tacaatggtt ccaatcgagt atatccatgc aaaaatggat aaaaatctcc tcctcgaaaa
      121 agagattgaa tcatctttga atgcgatgat ctatgttttt gggggagaaa tctctgttga
      181 aaataaaatc atcaaagatg gtgaattagc cctcttatca gagggtaaaa gaatcaccat
      241 ccaatctaat gagccctctg aatttctaat tttagcaggg cccgaattga atgaacccat
      301 tgcacgacat ggaccatttg tgatgaatac tagagaagaa atccaccagg catttttgga
      361 ttatcaaaat ggtacatttg taaattgata ttagggtgaa tttacgcgac cgtaccctca
      421 agacccccgc ttgaataccg tattcatggc gagcaggatt gagtggactc aaggagagga
      481 gatgcttggg attacaagtg atggtaagcg tgtcatgatg cacacgaatg atactgcaag
      541 tccaatgcaa cttctcattc tttcacacgg cgcatgttca atgattgatg ttgttgttgg
      601 ccttaagggt aggatggaga atatccaggc cgcttgggtt gaagttgatg ttgatcgagc
      661 agagtcccct cctcggagat tgacagctgt aagaatgcac tatgtcatcg aaggaaatgt
      721 tcccgagaaa ttagttgagc gcctcatcca ccagagtcat gagaagtact gttcggttgg
      781 tgcaactatt cttggtggcg aaacttcgct tgattggact atggaaatcc gttcataatc
      841 agaggccaag caatttcttt gggtgattga agaactccgg caggtcacaa tcccgggcca
      901 cctctttttc catccatgct ccctcagcaa atgcacgacc taggccgaca ccttccatcc
      961 aagcatacgc ttctttccaa ccggaacgag tcaaccccac atcaagtgct gagcgaccaa
     1021 gatgtcgagc atgttgttct ccctcgtcag gaaaccaaga ttccaaatct tggatatagg
     1081 accggagtgc agagacacct gcgccaatac cttgtgatat cgcaggcatc gtctccatat
     1141 gttccatctc aaacatttcc ctcattgaat cttcaattcc caataaatta gccaattgat
     1201 ttagcaaatt atgcccctct tcattcaatg catcatcgga ccaaccataa ctaagtccga
     1261 ttgagtatgg atggaccatt caattcaccc aagtaggtca tcgactagtt tgaggtgccg
     1321 ctcgaaactt attcctaact cacttcgttt cttggcaagt agtctaactt ctgcagggtc
     1381 gagaatacca tctacccaca cagtctgtag gagcatcaca tacgtggctt cagccttact
     1441 tacatcactc tcattcgatg attttgtctc gaaaccatct tgctccaaca aacttccatg
     1501 ggcaacatca gaatcgggca agccctcatc atcatccacg agattcgaga gagcatcata
     1561 tcctctacgt ccatcttctt ctgttgaggt agcattgact cgagacccga tgccgagttc
     1621 ctcaaaagga tcaacatcac tatgatcctc ggattcgatt gaagcaccgg gcaaaccgaa
     1681 ctcctcttct ttgtcctcgc cgtccatagt aaccgagaaa cattgggggt tgttcaaatc
     1741 atcttgttcc tgagtgtaaa aaaaaataca ttttttacaa cattaaacta atgttccgga
     1801 caacagaatt gcatcgagga atgcgcaatg gatagagccc ccccctcaat cttcaataac
     1861 catcgattga gccatgagac tcccgcgctc agataacatt gcgcagccca ctggtatgga
     1921 taataagaga ggtgaataag gcatgcaaac cacaatgaat ggaagcaacg atggaacgag
     1981 tgggatgaac attgaacgta gattcacagt ccttggcgtg gacccctttg ataccttcga
     2041 gtggatgacg acaagtattc agatcaaaaa tcaggatggg tctgttgccc ataatatgga
     2101 agaagtctgc ttcccagtgg gatttgaagg agttccaggc accgttgcag cgcagaagta
     2161 cctccgaaaa gcaggtgttc ctgctgcctt acgccccgtt cccgaagaca acgttccaat
     2221 ctggcttcag cgttcagccc cagatgaaga gaagttgcag gctatggagc ccgaagatcg
     2281 ctactgtgct gagaccgact tccgtcagat gtttaggcgt cttgcaggga cctggaccta
     2341 ttggggttgg aagcacggat acttcgcatc tgaggaagac gcccgctctt acttcgatga
     2401 gatgtgttac atgatcgcaa gtcaacgctc agctccaaat agtccacaat ggttcaacac
     2461 tggccttcat tgggcttacg gcatcgaagg caatcctcag gggcacaagt atgtagatcc
     2521 tgaaacaggc atcctaacag agtccacaaa ttcctatgaa caccctcaac ctcatgcttg
     2581 c
//
LOCUS       DUKB01000012           19436 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_4971, whole genome shotgun sequence.
ACCESSION   DUKB01000012 DUKB01000000
VERSION     DUKB01000012.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 19436)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 19436)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19436
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_4971"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..13071)
                     /locus_tag="HA345_00555"
     CDS             complement(<1..13071)
                     /locus_tag="HA345_00555"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012632.1,HMM:NF017183.1,HMM:NF024930.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83877.1"
                     /translation="MSSRYILKTRSLVLVFLMITMAQTGYTLNGFESSEETTAIDQLP
                     PSSNSIQNNEVANIFSGWSHTCVVTELGMVKCWGNNTAGQLGIGNIEDMGDESDEMGE
                     NLPYVDLGTNLTTETAALGEAHTCLLFTNNSVKCFGNIAALGLGYTDGNGAGDGYLET
                     GDYMPFWPMPAGRNVSQIAAGGGHTCAVLDDGSMTCWGENAEGQLGMGNTTDLGTQTD
                     QVGDSVAYVSLPTGVTVSAMALGKTHTCVLYDDGNVACWGDNAYGQLGIGSTDDIGDG
                     GGEMGNSLTNITWPTGRYASSITAGDGFTCAILDNDDVLCWGLNDVGQLGLGNTNNYG
                     DSSGEAISSLSGIDLGGSFVAEAIDAGRDHICAKDYPNTIKCWGGNANGQLGLGDLDN
                     RGDEALEMGSNLPHVDLGTSNPNPREITVGDNFACYRKNTGSNAVVKCWGASANGRLG
                     YEDTETLGDSPNDNLGHTVNLALDQEFALEPCDAIFSHENPTIESFQLDGGLKGRMLE
                     IAFRSDGCPGLAYIDDSTDRIRFAVYNQGIWTFEYPLTSGPGEVLDLDFLFDTNDVPH
                     ISWTDPSYNTGTTQDAHYATKSNGRWHHVELGLANPHEVEMVLNHTNVLEIITNTNTS
                     GQHAFRHAVCDTTVHTCQSSTNWTGSSNTHTFQGSDMDVIVNLDGSITNLFLEEDTPD
                     KIKMKTKQAGQTASQSDYGPASSPSFTYNTSSASGDDIRSIRMIQSADGNFHMVYVPT
                     DLSTNGLLYGYCTTQCLRGPGLNDWVLSPIAGATSSTFSFAVDSDLIPHVFYGTSSGI
                     YHTKLIDGSWTSPIQLLTLAVNEIRAEISENGNLWIGTQTTNGNLRIIHDVGFGGNGM
                     GIDADGDGWLGIDEYTCGSDRFNITSTPPDEDNDGICDDKDDRYDTPSYGEANTIGLG
                     VDFACSTTGRPHNTSVDSAVMCWGLNSHQQLGSNYSRLYTQGNAGLAAGFSMGAVSPQ
                     GIPKAFVATAVTVGDRHACALGIDGSVYCWGDNRVGQLGINSTITNATATRVTMHSSA
                     GRVMSISAGAQHTCATTINQALYCWGDSTDHQLGEYELANSTGSISETFSSSSWQSTT
                     PFDDIYIGRWSTNAADVDWTHSTDNGGTLKWDLRSSCNYYNQFSFSVDALENGYIRYE
                     IKTDFGSGDYVGFYIDGTGSQTTHQSVSSFTTYNHTFTEGETEFKWVGTNGCNTGGFN
                     EAWIDNIEIYAGYSIESGGIVRTPSKVMLGNTQVSDVTAGDRHTCIVTSNGEAKCWGH
                     NGGINNMSLGNSSFTGTNTSTPQTVDLAGAGSQWTSSSNPVFSSVVAGNGATCGTLAQ
                     NSSLICWGNGVATQSGHSAGTSILGSGSGPSIHSTFVNITGQHNTSVAVGDLHACAVT
                     GSSLSCWGKETSGALGDGSPNTTNSSTPVTVTSPTGWIPVDVSVNHDATCAIYRNSTD
                     AKDIYCWGNRWIAGNGNFFGEIPDEPDDPVQVNATSFPILELSSTSSELTVAPHDVEE
                     ITMGQYFTCARSYEGMVKCWGYNGYGELGIGNSQTVGDHLHEMGEYQAFTDLGSNLSA
                     VDIDAGRHHACAAMASGEVRCWGLGNDWRLGTPITNNLGDNPNEMGDNMYTLTPPGSE
                     KFVEVSTSEDASCARTDAGNVHCWGDGSYNLAHPTSNYDQYYSASRTIPLSDKATKIS
                     LGTEFACALLQSHEVQCWGYNGYGQLLHGNTSANSPHQNDPLLNLGEGVGARDIVTGS
                     AFGCAILTTEEIVCWGRGSDYRTGRNSGSNYGDHNSEIEVDSYASTSPYHRIAQTHRM
                     DLGPYSNGACSINEASQVECWGHNYIAGGPNHRGTPWIIDIGGPARYVATGESAACAV
                     GIDGAIHCWGSNSYGKLGLGDTTDRSYIGAITEPVTLTHESTDVRLWNPDSDFDGWKD
                     LWDTDDDNDGTLDVNDDFSTDPCADTDTDNDGMPDTIVTNCATVLIEDTDDDGDGWTD
                     ILENTCSTNPLISTSVPQDLDNDGTCNYIDTDDDGDGWSDADEFECEPNGFDNFEPFF
                     NDNAHIPSTNFMVDLFHGGNNDDELSLVSRTTNYQRPNIWTFDSQTPTLSEYFGSTSN
                     SYMNNVDAVHINGTTTVVTNRYVEERTATQTYTQATTVLDLGTSYDVEYYFSSIDIDD
                     SGRMYVADGDYRLYYQSTSDSSFSNIGLPIASAHDGRMHLEVEPDGTVHIAYWYNNIL
                     YHRTSDLPQSGSRSWNPEVTVYSAENRAPYSFDLEVDSNGIAHIAFISSSTDSYAMIY
                     INNTGGSFSSSNAIVDNLPNAADNYLDLDLDSNGMAHLTWTDKSNRTVYRTIIDGSSS
                     TTSLVETLPSGNDYTIYGVSQAISSDDRVNIFISARSKSVLASQGSFTPWSLQANVEP
                     GDVDGDGICDNLETAPLSYDVIKLEEGQSITLNPNWPGLTATQVINNTALPSGLTLDS
                     STGVISGAPVGQDLGFSVSFNTTSNQENWTGSIIFQIIPSAPLLQSPTTYAANAGSFP
                     CISNTGSYANTYLGFGHRVVYDQNDGSRYTAGQACHLVNAGIPSTVPGMENHSSSNWN
                     IYDLLITKQSVDGVYQWVHVIENWYNNNSYSYQLHVNDLALNANGMPLLLMSIPNGLG
                     EIAFDRSRSHNIQPASNGDRTHRSLALVQFDGTGHVDWTEYMEQTSHSAEVYGMGVSG
                     GTNSDRPTSSTASQLIVDSNGNITMVGTVKTSGSTGGFEFSIGGMTYTGPNNCSSNER
                     PFIARFNSQGTAQWISGSTFQSASSCDKTWPVDLATRTDGGVYVAMRPNTWGAGISYN
                     SIDTPSNTASDQRASFIYSFDNNGQAEWVHLFRQNIYGSSTLAHQITIATFDDDSLHV
                     ALTPSTGTSARPTSLVQNSTNSYHTPTLCQTGSSSVDGESWLYTARLNESDGGCVWAD
                     IDRGESLYAISDGIGSRCESGIMSYIQNDMVRIIVPDNCASSGTALAYLLTDGNGDVL
                     STVQSSRFSASGNLRLHDFGPDEHGQPYILLVTTSRNIDWGSKYADPPILQNYQSITA
                     GNSINLLRIVGPRSHPVSEDKPQVGVNYDQYPVNGCTCSDFVTWSLENTTGNPVVLPP
                     GLSFTESSGRIHGNPTTITANQTFWLNNTIEGRTFSKIIEIGVSPTAPTLTYPSTMDD
                     LVRGVEMSEFVPSIPSTATVHSMTISPSLPLGLNLGPTNGTIWGTPTANQTSEDYTIR
                     ACNSWGICGAPVTVTITINEPTAVAVWGGNNSIYVPRDVAVSVCPDTTAGGMVETWGI
                     GMSPSLPYGMSFNFTTGCFEGTPLLYTSSQNHTVTVTNTNGSVTFTVEINVTGAGIGL
                     TFPTSSLTLENGTAMQPIAGQTTGDNPASWTISPSVPPGLQFGTNNGTIWGTPSESNT
                     SRVYTITVTSTSGMTASTTITIEVLEPVEEIYLTMPTGLIMLINGTSMQPISGQTSGG
                     TPVSWSISPELPDGLSIDATNGTIWGTPNEAAPLDTYTITVSTAGGFSDTATIQLVVQ
                     EDTDGDSIPDALDNDDDGDGVLDTNEEIDCELVADCDGDGVDDGEDAFPTDDTEDTDS
                     DGDGIGNNADNDNDNDGWTTTQEAECGGTSDLDPLDQPTDTDGDGICDTLDTTDDRPI
                     VMVVSTDSLNLLSNQTMQAFTPTTSGGDIETWTIEPGISLSPGLAFDVGTGTISGTPT
                     ETTSAIQYWINASNGQYDASVSVTITIYDVTGDYDGDGILDFEDTDDDNDGWSDTDEA
                     TCSTDSMDITSVPTDQDGDGECEDNGLDQYLDLPLAFAYPSQTLELANASEMSAFIPT
                     LNGQGDVRTWNISDDLPNGLTFSWSPARSTDGDGGIRGTPTEEIGPTEYTIWANNSQH
                     SASFTITLSVLKDTDRDLIPDIYDDDDDGDTWPDAVEVLCGTDPLNVGQSPVDADNDG
                     TCDALQVEEDTDSDGDGIPDDSDVFPNDPAAAFDNDGDGMPDDLYGFSTTVPPLIEDL
                     DDDNDGWLDTREAECGSDRFDANSLPIDSDQDGTCDGIDQDRDGDGVSNINDAFPADK
                     EAFLDTDGDGEPDDISGTTAGLTEDLDDDGDNYTDIEEIECGSDSKDSDEIPLDSDGD
                     GLCDAKENTSSTTEEDDNDESGLYLISSEYWWCCILLLLLMLLAIIPLLARNRTVILL
                     TKKSPEPEHTESSPMFLEGSGTRKDPFVLAPFTLTAGSSQICSERITITDISEGYPVS
                     MSDLMKFENDERFKLLDVKDEDVFEDDLDPVKTIEVDADGTIEIRILFTDEANPTLAG
                     GSYDGLLRIGSNTVYLSWNVVIEGDPEYIAEQKANEEARIKAEKDAKIKAEKDAEKAE
                     KADAEAEVAKMKVEAEIEVEKAKAKAEAEATKAKAKAVAEAAAVKAKAEAEVEAAKIK
                     AEAEAEAEKAKVEAAKAKAEA"
     gene            13199..13804
                     /locus_tag="HA345_00560"
     CDS             13199..13804
                     /locus_tag="HA345_00560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83878.1"
                     /translation="MVELSSIIALIGIVSIALVTPGPNNLTALIHSGLHGARANIPLI
                     GGMATGFILLQTFVAILVNNLNELGNWAYILHWIGVVFIILLAIVIGRLRPDLTKQSD
                     IPRLGFKTGFAMQWINGKEWGFVILYMTLLLDDFGGGVTGSLWIISIVTTICILAIFA
                     WSVFGMKLERFMTNPKIAPRLFPLLGGCLGLLAIAIGLRGA"
     gene            complement(13805..14461)
                     /locus_tag="HA345_00565"
     CDS             complement(13805..14461)
                     /locus_tag="HA345_00565"
                     /inference="COORDINATES: protein motif:HMM:NF016831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83879.1"
                     /translation="MAGGTRLLQFRVTAENFGNLEGAHLLKFFDSVEFISNYQAGSKN
                     PPASIIAKLKHQQPLHEYEEIEALRITDILTEGENESLAIVTLGGPFTRKVASLDSLW
                     ITHPTIVTPDFLKVTISGIPSSIKEMMRIAQALPERMSYSLLESDDSKITPVNMSNMP
                     PRRQKVLLKAIELGYYRYPRGCTQRDIAEAVGLKQATVSEHLQKGESTVLNSWSKKHN
                     "
     gene            complement(14521..16578)
                     /locus_tag="HA345_00570"
     CDS             complement(14521..16578)
                     /locus_tag="HA345_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83880.1"
                     /translation="MWEHRSISDEYLRTNRRIQPMETYVELMGMVERGVAAPQSHAFD
                     DEDFLQYIPRSGPWAPQMNTDMTTEDPRRRYIGKGVPKFLNTNIILGSSWIESDRFRF
                     ERDLNTMSDWVKQKTILQANMWTPAQVVTTQTLVFCSTGDEDRMGSALSVRADPTDFE
                     IPGDDHMFLGVTEDGFPEWEPLVWGLGHRGVVPGSDPQERVYYPSLMHRNVTYNNRLG
                     WIRYSPAGFGKDANGYLMTKPYDWIWQAVNGNRETPSAFNLLVNMPDRRDSFGEDGIT
                     DIFLTSGKTSLYTMMGMMNSATVRQMFGGGSDLVPLEMHIVEPGLDEWVQRASDEDRY
                     GRLFEYTATLGYLLTDPNIGTLGEGAGRRRLLVYPQDQANLLTSVNASQVADHALKGN
                     YQATVFTKLDQADFQNRVSRRMSQYADLITPSSKARGQRWVSQANWGGEDGVQQGATV
                     HSLLAVRGYEILQMEEYRATFNEVSAAPQRLMRRLIQSVATNALKTVYPLNLVTDQGG
                     GGAPYQKLFSPMSSDEPLVYYTDIRFLVPTTIDDLRSQTGQKGADRAKLRTAFTELTG
                     ADPVTGLQVLDLCLPFLAEMGPGSWQQGTGVKPNEVIVEVTCAVNPNAVWKSLLEPTL
                     NDTFQLPKGKKGTAANIWGDVLIKNDQLQEKMKKDGIESWLRMLKMIYHYSNNLSKKR
                     NGL"
     gene            complement(16590..16817)
                     /locus_tag="HA345_00575"
     CDS             complement(16590..16817)
                     /locus_tag="HA345_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83881.1"
                     /translation="MRITPYLMAAFGLIFLIFGLGIDFGETENSFDAIQVLLGLIQTI
                     IGILLTGHVPLPFLPQPGVNPVEHEDPTKKF"
     gene            complement(16912..17922)
                     /locus_tag="HA345_00580"
     CDS             complement(16912..17922)
                     /locus_tag="HA345_00580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83882.1"
                     /translation="MDPDSTMLAAGLGGAIAVVILLRILFRFMRMNTIASDVSKVRET
                     ELESEPVPLATYTRTLTMRERILLHLRYVASEPTEIEGTMPTHNEAIDAVTMGDLKGL
                     HVALSAMESDGEIRSTGMVGSIFELTDEGRIRANAIHGDFIGSIVMMDGVEVAVGEAI
                     GFEGFPLIGDHIESWEDGHGAEGLRSLISSMITAFSDGRMTFKEKQELDFQAEGNGLD
                     ELQAGYIASYVKAAMDVRDVIVEEEIELPSAPDFPDLESEEIPEFNLDLSEPEPEPEP
                     EPEPKPEPKPEPEPEPEPEPEPEPEPEPKPEPEPHLSMADRYGGPDPEDDSRPDHMHR
                     KF"
     gene            complement(18715..18931)
                     /locus_tag="HA345_00585"
                     /pseudo
     CDS             complement(18715..18931)
                     /locus_tag="HA345_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011956621.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     assembly_gap    18932..19292
                     /estimated_length=361
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <19293..>19436
                     /locus_tag="HA345_00590"
     CDS             <19293..>19436
                     /locus_tag="HA345_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83883.1"
                     /translation="LTLLALLTGLLSLLALLTLLALLTLLALLTLLALLTLLTLLALT
                     LALT"
BASE COUNT         4622 a         4660 c         4562 g         5231 t
ORIGIN      
        1 cgcctctgcc tttgccttgg ctgcttccac cttcgccttc tcagcttctg cttccgcctc
       61 tgccttgatc ttcgctgctt ctacctctgc ctcggccttc gcctttacag ccgctgcttc
      121 agctacagcc ttcgccttgg cctttgtcgc ctctgcttcc gccttcgcct tggccttctc
      181 aacctctatt tcagcttcca ccttcatctt agcaacttca gcttcagcat cggccttctc
      241 agccttctca gcgtccttct ctgcctttat cttggcatcc ttctctgcct tgatccgagc
      301 ctcttcattc gccttctgct cagcaatata ttccggatcg ccttcgataa caacattcca
      361 ggacaagtag acagtgttcg aaccaattcg aagtaggcca tcataactac cgccagcaag
      421 ggttggattt gcttcgtcag tgaaaagaat acgaatttcg attgtaccat ccgcatcaac
      481 ctcaattgtc ttgactggat ctaaatcatc ctcgaataca tcctcgtctt tgacatctaa
      541 caacttgaaa cgttcgtcat tctcgaactt catcaaatcg gacatgctga ctggatatcc
      601 ttccgaaatg tcagtgattg taatccgctc agagcatatc tgggatgaac ctgcagtaag
      661 agtaaacggt gctaagacga aggggtcctt tcgcgttccc gagccttcta agaacatagg
      721 tgaagactct gtatgctcgg gttcaggact cttcttcgtc aacaaaataa ccgtacgatt
      781 tcgtgcgagt aatggaataa tcgccaatag catcaggaga agcagaagaa tacaacacca
      841 ccagtactcg gagctaatta ggtaaagacc tgattcgtca ttatcgtcct cttcggtggt
      901 ggaactcgtg ttttcctttg catcgcagag gccgtcacca tcgctatcca acgggatttc
      961 atccgaatcc ttgctgtcag agccgcattc aatctcttca atgtcggtgt agttatctcc
     1021 gtcatcatcg aggtcctccg ttaggcctgc tgttgtacca ctaatgtcgt ctggctcacc
     1081 atctccatcc gtatcgagga aggcctcctt atctgcaggg aaggcgtcat tgatgttcga
     1141 aacaccatca ccgtcacggt cttgatcaat accatcgcaa gtcccatcct gatcactgtc
     1201 gattggtaga gagttggcat cgaagcgatc gcttccgcac tctgcttcgc gggtatcgag
     1261 ccatccgtcg ttatcatcat caagatcttc aatcaatggt ggaactgtgg tagagaaccc
     1321 atagaggtca tccggcatac catcgccatc attgtcgaag gcagcagcgg gatcattcgg
     1381 gaacacatca ctatcatctg ggatgccgtc accatcggaa tcggtgtcct cttcgacttg
     1441 aagtgcatca catgtgccat cattgtccgc atcaactggg gactgtccaa cgttcaatgg
     1501 atcagtgcca catagtacct caacagcatc tggccacgta tcaccgtcat catcgtcatc
     1561 gtagatatct ggaatcaaat cacgatctgt gtccttcaat acagacagtg taattgtgaa
     1621 tgaggcgcta tgctgcgaat tgttggccca aattgtgtat tctgttggac ctatttcttc
     1681 agtgggagta ccgcgaatac caccatcgcc atccgtgcta cgagcagggc tccacgagaa
     1741 tgtgaggcca tttggaagat catcactaat attccaagta cgaacgtcac cttgaccatt
     1801 cagcgttgga atgaatgcgc tcatctcaga ggcgtttgcc aactcaagtg tctgtgacgg
     1861 atatgcaaag gcaagaggca aatcgagata ctggtctaga ccattgtctt cacattcacc
     1921 gtcgccatcc tgatcggttg gaacacttgt gatatccatg gaatccgtgc tacaagtcgc
     1981 ttcatccgta tcgctccaac cgtcgttatc atcatccgta tcttcgaaat caaggattcc
     2041 atcgccgtca taatcgccag tcacatcgta gatcgtgatt gtcacggata ctgatgcatc
     2101 atactgacca ttgcttgcat tgatccaata ttgaatcgca gaggttgttt ccgttggtgt
     2161 acccgaaatc gtacccgtgc ctacatcgaa agctaagcca ggtgatagtg agatcccggg
     2221 ctcaatcgtc catgtctcaa tatctccgcc cgaggttgtt ggggtgaaag cctgcatggt
     2281 ctggttcgaa aggagattca gggagtcagt cgacacgacc atgacaatcg gtcgatcgtc
     2341 ggttgtgtca agcgtgtcac aaattccatc tccgtccgta tcggttggct gatccaacgg
     2401 gtctagatca gaagttccgc cgcattcggc ttcttgtgtt gttgtccaac catcgttgtc
     2461 attgtcatta tctgcattgt taccaattcc atcgccatcg gagtctgtgt cttctgtatc
     2521 gtctgttggg aaggcgtcct ctccatcatc aacaccatct ccatcgcaat ccgcaactaa
     2581 ttcacagtca atttcctcat tggtgtcgag aacaccgtca ccgtcatcgt cattgtcgag
     2641 agcatctggt atactgtcac catctgtgtc ctcctgtaca acaagctgga ttgtagcagt
     2701 atcagagaat ccaccagcag tggacactgt aatcgtgtag gtgtctaatg gtgcggcctc
     2761 gttcggcgtg ccccatatgg taccattggt agcgtcgatt gacaatccat ctggaagttc
     2821 tggactaatc gaccaagata cgggtgtgcc tcctgatgtc tgaccggaaa tcggttgcat
     2881 cgatgttcca ttgatcagca taatcaggcc tgttggcatg gtcagataga tttcctcgac
     2941 gggctcaagc acttcgattg taatcgtggt tgaagcagtc atgccactgg ttgacgtaac
     3001 tgtgattgtg taaactcgag atgtgttact ttctgacggg gttccccata tcgtaccgtt
     3061 gttggttcca aactgaagcc ctggtggcac actcggacta atcgtccatg atgctgggtt
     3121 atcgccagtc gtctgcccag caataggttg catcgcagta ccattctcga gagtcaaact
     3181 actggtgggg aatgttaggc caattccagc ccctgttaca ttgatctcta ccgtaaatgt
     3241 gactgaacca ttggtattcg taacagtaac tgtatgattc tgtgaactgg tatacaacag
     3301 tggagtacct tcgaaacatc ctgttgtgaa attgaaactc attccatatg ggagggatgg
     3361 tgacatacca ataccccatg tctcgaccat gccaccagca gttgtgtcag gacacacgct
     3421 aacagctaca tctcttggaa catagatact gttattgccg ccccagaccg ctactgcagt
     3481 tggctcattg atggtaatcg taacagttac tggcgcacca caaattcccc agctgttgca
     3541 tgcacgaatt gtgtagtctt cactcgtctg atttgctgtc ggtgtgcccc aaattgtgcc
     3601 attggttgga ccgaggttca aacctagagg tagagaagga ctgatggtca tggaatgaac
     3661 cgtggcagtt gacggaattg acggtacaaa ttctgacatt tcaacgccac gaacaaggtc
     3721 gtccatggtg gacgggtacg ttagtgtggg cgctgtaggt gataccccga tctcaatgat
     3781 tttcgagaag gtccgtcctt caattgtgtt attcagccag aatgtctgat ttgctgtaat
     3841 tgttgtcggg ttgccatgga ttcttcccga tgattcagta aaggacaatc caggaggaag
     3901 gaccactgga ttacctgtag tattctccaa agaccaagta acgaaatctg aacaggtaca
     3961 gccgttaaca ggatattggt cgtaatttac gccaacttgc ggcttgtcct cgctaactgg
     4021 gtgggaacga ggtccaacga tgcgcagtag gttgatgcta tttcctgctg tgatggattg
     4081 ataattttga aggataggtg gatcagcata cttgctaccc cagtcgatgt tacggctcgt
     4141 tgttactagg agaatatacg gttgaccgtg ctcatcgggc ccaaaatcat ggagcctgag
     4201 gttccctgaa gcgctaaaac gagaggattg aactgtggac aaaacatctc cattgccatc
     4261 ggttaaaagg taagcaagtg ctgttccaga actagcacag ttatcaggta caattatgcg
     4321 aaccatgtca ttttgaatgt atgacataat tccgctttca catcgagacc ctatgccatc
     4381 gctgatggca tagaggctct ctccacgatc gatatcagcc caaacacagc ctccatcgga
     4441 ctcgttgagg cgagcagtgt agagccaact ttccccatct acagacgaag agccagtctg
     4501 acaaagcgtt ggagtatggt aagaatttgt ggaattctgc actaaggacg tcggtcgagc
     4561 ggaggttcct gtggaaggag ttaaggctac atgtagcgaa tcgtcatcaa atgttgcaat
     4621 agtgatctga tgagcaagtg tgctgctacc gtagatattc tgcctgaata gatgaaccca
     4681 ttcggcttga ccattgttat cgaaagaata gatgaatgat gcacgctggt ctgatgctgt
     4741 attgcttggg gtgtctatac tgttgtaaga tatccctgct ccccaagtat ttgggcgcat
     4801 tgctacgtac actcctccat cagttcgagt cgccaaatca acgggccatg ttttatcaca
     4861 ggacgaagca gattggaagg ttgaacctga aatccactgt gctgttcctt gtgaattgaa
     4921 acgagcgata aatgggcgtt cgttggaaga acaattgttt ggacctgtat aggtcattcc
     4981 acctattgaa aactcgaatc cccctgttga tccgctggtc ttcactgtgc caaccatagt
     5041 tatgtttcca tttgaatcaa caatcaattg agatgctgta gaactagtgg gacgatcaga
     5101 attggtgccg ccgcttactc ccattccata gacctcagca gagtgtgatg tttgttccat
     5161 atactcggtc cagtcaacgt gaccggttcc atcaaattga accagtgcaa gagatctatg
     5221 ggtccgatcg ccgttcgatg ccggttgtat gttatgagat ctagatcgat cgaaggcaat
     5281 ttcacccaac ccattgggga tagacatcag taaaagcggc ataccgttgg cattgagagc
     5341 caagtcattg acatgcaact ggtaagagta actattgttg ttgtaccagt tctcaatcac
     5401 atgaacccac tggtatactc cgtcaacaga ctgtttagtg atgagaaggt catagatatt
     5461 ccaattactg ctggagtgat tttccatacc tgggacagtc gagggtattc cggcattgac
     5521 gagatggcac gcttgacctg cagtgtatcg agacccgtca ttctggtcgt atactactcg
     5581 gtgaccgaat cctaggtagg tgttagcgta ggatccggtg ttggatatac atgggaaact
     5641 gccggcgttg gcggcataag tagtcggact ctgaagtagt ggagcagatg gaataatctg
     5701 gaatatgatt gagcctgtcc aattctcctg gttggatgtt gtattgaatg aaacactgaa
     5761 tccaagatct tggccgactg gagcgcctga aataacacct gtcgaagaat cgagggttag
     5821 gcctgaaggt agtgctgtat tgttgatgac ttgcgttgct gttagacccg gccaatttgg
     5881 attgagagtg atggattggc cctcttccaa ttttatgaca tcgtatgata gaggggcagt
     5941 ctcaagattg tcgcaaattc catccccatc aacatcacca ggctcgacat ttgcttgaag
     6001 tgaccatgga gtaaaagacc cctgagatgc tagaacgctc ttcgagcgtg cgctaatgaa
     6061 aatattcaca cgatcgtcag atgaaatcgc ttgagatacc ccatatatgg tgtaatcatt
     6121 tccactagga agggtttcta ccaaacttgt ggttgaagag gagccgtcga taatcgtacg
     6181 atagaccgtt cgattggatt tatccgtcca agtcagatga gccattccat tcgagtcgag
     6241 gtccaaatct aggtagttgt ctgcggcatt tggtaaatta tccactatgg cattagagga
     6301 agagaaacta ccgccagtat tgttgatgta tatcattgca taggaatcgg tcgaagaaga
     6361 aatgaaggct atgtgtgcta ttccgttcga atctacctct aaatcgaatg agtaaggtgc
     6421 cctattttct gctgagtaaa cagtgacttc tgggttccac gatcgtgatc ctgattgagg
     6481 aagatcgctc gttctgtgat acaagatgtt gttgtaccag tatgcaatgt gtactgtgcc
     6541 atcgggttca acctcaagat gcatcctacc atcatgggcg gaagcgattg gtaaaccgat
     6601 attggaaaac gaactgtcgg aagtagactg gtaatagagt ctataatctc catcggccac
     6661 gtacattctt ccagaatcat caatatcaat acttgagaag taatattcta catcgtatga
     6721 ggtgcctaag tcgagcaccg ttgttgcctg agtatacgtt tgagttgccg tacgttcttc
     6781 gacatacctg ttagttacaa ctgttgtagt tccgttaatg tgtacagcat caacgttgtt
     6841 catgtaggag tttgaagttg atccgaaata ctcagatagt gttggggtct gagaatcgaa
     6901 tgtccaaata ttcgggcgct gatagttggt ggtacgcgac acgagactca attcgtcatc
     6961 attgttgccg ccatggaata gatccaccat gaaattggtt gagggtatgt gcgcattatc
     7021 attgaagaag ggttcgaagt tgtcgaaacc gttgggttcg cattcgaact catctgcatc
     7081 tgaccaacca tctccatcgt catctgtatc gatgtaattg caagttccat cattgtctaa
     7141 atcctgaggc actgaagtag aaatgagtgg attagtggaa catgtgttct ccaatatgtc
     7201 tgtccatccg tctccatcgt catctgtatc ctcaatcaaa acagtagcac aatttgtgac
     7261 aattgtgtct ggcatgccgt cattatcggt atctgtatct gcacagggat cggtactgaa
     7321 gtcatcgttc acatcgagtg tgccatcatt atcgtcgtct gtatcccaca aatccttcca
     7381 gccatcaaaa tccgaatctg gattccatag acgtacgtcg gttgattcat gagtgagagt
     7441 tactggttct gtgattgcac caatgtacga gcgatctgta gtatcgccaa gccctagttt
     7501 tccatatgaa ttcgagcccc agcaatgaat tgctccatca ataccaacag cacacgctgc
     7561 agattcgcct gtagcaacat aacgtgcagg gccaccgata tcgattatcc aaggagtgcc
     7621 acgatggttt ggtccgccag cgatatagtt gtgcccccag cactcaactt gggaagcttc
     7681 gttgatgctg catgccccgt tgctgtatgg tccaagatcc atacgatgag tttgtgcaat
     7741 acgatggtaa gggcttgttg aagcgtagct gtctacctca atttcagaat tatgatctcc
     7801 gtagttacta ccggaattgc gtcccgtcct ataatcggac ccgcgacccc aacaaacaat
     7861 ttcttctgtt gtcaaaatcg cacaaccaaa tgcgctgcct gtcacgatat ctcgggcacc
     7921 aacaccttct cccaaattga gtaatgggtc attttgatga ggggagttgg ccgatgtatt
     7981 tccgtgtagt aattgcccat atccattgta accccaacat tgaacctcat gggattgcaa
     8041 taatgcacaa gcaaattcag ttccgagaga gattttggta gctttgtcac ttagtggtat
     8101 tgtccgagat gctgaataat attggtcata gttggaggtt gggtgagcca agttgtagct
     8161 gccatcaccc caacaatgga catttccagc atctgttcgt gcacaagatg catcttcgga
     8221 agttgacact tcaacaaatt tctcacttcc tggaggtgtc aaagtgtaca tattatctcc
     8281 catctcgttg ggattgtcgc ctagattatt ggttatgggc gtgccgagac gccaatcgtt
     8341 cccgagaccc caacacctca cttcaccgct agccattgca gcacatgcat ggtgtctccc
     8401 tgcgtcaata tctacagctg atagattgct accaagatcg gtaaaggcct gatattctcc
     8461 catttcatgc aaatgatctc ccacagtttg tgagtttcca atccctaatt ctccatagcc
     8521 attgtaaccc caacacttta ccatcccctc ataagaacgt gcacacgtga aatattgacc
     8581 cattgttatc tcttcaacat catgtggtgc gacagttagt tcagaactcg tggagcttaa
     8641 ttcaaggatt ggaaatgatg tggcgtttac ttgaactgga tcatcgggtt cgtctggtat
     8701 ttcgccaaag aaattaccat ttcctgcaat ccacctattg ccccaacaat agatgtcttt
     8761 tgcatcggtt gaatttcggt agattgcgca agtagcatcg tgattaacag aaacatcgac
     8821 tgggatccat ccagtcggag aagtcacagt cacgggggta gacgagttag tggtgtttgg
     8881 agagccatcg ccaagagcgc cagaagtctc cttgccccag catgaaaggc tggatcctgt
     8941 gacggcacaa gcatgaagat caccaacggc gactgaggtg ttgtgctgtc ctgtgatgtt
     9001 aacgaaggta ctgtgaattg atggtcctga gccgctgccc aggatagatg ttccagcgct
     9061 gtgaccactc tgagttgcaa caccgttgcc ccagcaaatg agggaactat tctgtgcaag
     9121 agttccacat gtggcgccgt tgccagcgac tacagaggag aatacagggt tagaagacga
     9181 ggtccattgt gaacctgcgc ctgcaagatc aactgtttga ggagtggaag tattcgttcc
     9241 agtaaaggaa gaattaccga ggctcatgtt gttgattccg ccattatggc cccaacactt
     9301 tgcttcgccg tttgacgtaa ctatgcaagt gtgtctatcg cctgcagtta catctgaaac
     9361 ttgggtattc cctaacataa ccttggaagg tgtacgaaca ataccaccac tctcgataga
     9421 gtagcctgca tatatctcga tgttgtcaat ccatgcttcg ttgaatccgc cagtattaca
     9481 accgttcgta cccacccact tgaattcggt ttcaccttcg gtaaaggtat ggttgtaagt
     9541 agtgaaagaa gagacgcttt ggtgggtagt ttgtgatcca gttccatcga tatagaaacc
     9601 aacataatca ccactgccaa agtctgtctt tatttcatat ctgatatatc cattttcgag
     9661 tgcatcaaca ctgaatgaaa attgattgta atagttacaa ctgcttcgaa gatcccactt
     9721 gagtgtccct ccattatctg tgctgtgtgt ccaatcaaca tctgcagcat tagtagacca
     9781 acgtccgatg tagatgtcat cgaatggtgt agtagattgc cacgaagatg atgagaatgt
     9841 ttctgagatt gagcctgttg aattagcaag ttcgtattct ccaagttggt gatctgtgga
     9901 gtcgccccaa cagtacagag cttgatttat tgtggtagca caagtgtgtt gtgcacctgc
     9961 cgaaatggac attacacgac cggccgaaga atgcatggtt actctggtcg ctgtagcatt
    10021 agtaatggtg gaattaatgc caagttgtcc aacacgattg tctccccaac aatatacaga
    10081 tccatcaatg cctagagcac aagcatgacg atcgccaaca gtcactgctg tggcaacgaa
    10141 ggccttcgga attccttggg gggatactgc acccatactg aatccggccg caagtcctgc
    10201 gttcccttgg gtgtataacc tagaatagtt cgatcccaat tgttgatgtg agttcaaacc
    10261 ccagcacatc actgctgagt caacactggt attgtgtggg cgtccggtag tagagcaagc
    10321 aaagtctaca ccaagcccaa tcgtgtttgc ttcaccatag gaaggtgtgt cgtaacgatc
    10381 gtccttgtca tcgcaaatcc cgtcattatc ttcatctggt ggagtcgaag tgatattgaa
    10441 acgatcagaa ccacaggtgt attcatcgat cccaagccaa ccatcgccgt cagcatcaat
    10501 tcccattcca ttgcctccaa agccgacatc atggatgatc cgcagatttc cattagtggt
    10561 ttgtgtacca atccagaggt tgccattctc actgatttca gcacggattt cattcaccgc
    10621 tagagtcagt aattgaattg gagaagtcca agatccatca atgagtttgg tgtgataaat
    10681 cccgcttgag gtgccgtaga acacatgcgg aatcaagtca gaatctactg caaaagagaa
    10741 tgtggatgac gtagctcctg caattggaga gaggacccag tcatttaagc cggggccacg
    10801 gagacattgc gtggtacaat aaccatacaa cagcccattc gtggacaaat ctgttggaac
    10861 atagaccatg tgaaaattac catctgctga ttgaatcatt cgaattgagc ggatatcgtc
    10921 gcccgaagct gaagacgtgt tgtatgtgaa agatgggctc gacgctggac catagtctga
    10981 ctggcttgct gtttgtccag cttgctttgt cttcatcttg atcttatcag gcgtgtcttc
    11041 ttcaaggaag agattggtga ttgaaccatc caagtttacg attacgtcca tgtctgaacc
    11101 ttggaaggta tgtgtgttac tggagccagt ccaatttgtg gaggactgac aagtatggac
    11161 tgtcgtgtca cagacagcgt gccggaatgc gtgttggcct gaagtgttcg tatttgtgat
    11221 gatttcgagt acatttgtgt gattgaggac catctcaacc tcgtgaggat tcgcaaggcc
    11281 cagctctaca tgatgccagc ggccattcga cttcgttgca taatgggcat cttgtgtcgt
    11341 gcctgtgttg taggatgggt cggtccagga gatatgtgga acgtcatttg tgtcaaacag
    11401 gaagtccaag tcgagcactt ctcccggccc acttgtgagt ggatattcaa aggtccaaat
    11461 gccctgatta tacacagcga atcgtattct gtcagttgaa tcgtcgatat atgcaagtcc
    11521 tggacaacca tcggatctga aggcgatctc caacattcgt cctttgaggc ctccatcaag
    11581 ttggaatgat tcgatggtcg gattttcatg agagaaaatc gcgtcacaag gttcgagtgc
    11641 gaattcttga tcgagagcga ggtttactgt atggccaaga ttgtcatttg gactgtcacc
    11701 gagtgtttct gtatcctcat atccaagtcg accgttggct gaagcccccc aacacttgac
    11761 tacagcattt gatccggtgt ttttcctata gcaagcgaaa ttatctccga cagtaatttc
    11821 tctaggattt ggattggaag tgcctaaatc tacgtgcgga agattgctgc ccatttcgag
    11881 agcctcgtca ccacggttgt cgaggtctcc cagaccgagt tgtccattcg cattgccacc
    11941 ccagcacttg attgtgttag ggtaatcttt ggcgcaaata tggtcgcgcc ctgcgtcaat
    12001 cgcttcagct acaaacgagc cgcccaaatc gatacctgaa aggctagata tcgcctcacc
    12061 acttgagtcg ccgtaattat tggtattacc gagacctaat tgtccgacat cattgagtcc
    12121 ccaacaaagg acgtcgtcgt tatcgagaat tgcacaagtg aatccatcac cggctgtaat
    12181 ggatgacgca tatcgtccag tgggccaagt aatgttggtg agtgaattac ccatctctcc
    12241 tccgccatca ccaatatcat cggtgctacc aattccgagt tgcccgtatg cattgtcacc
    12301 ccaacatgcc acatttccgt catcatagag gacgcaggta tgtgtcttgc caagtgccat
    12361 cgcactgacg gttacgcctg ttggaaggga tacatacgca acggagtcgc caacttgatc
    12421 ggtttgagtt ccaagatcgg ttgtattgcc cattccaagt tgaccctctg cattctcgcc
    12481 ccaacaagtc atacttccat catccaagac cgcgcaggta tgcccgcccc ctgcagcgat
    12541 ttgagataca ttgcgtccag ccggcatggg ccaaaacggc atgtaatcgc cagtctcaag
    12601 atacccgtct cccgcaccgt tcccatcagt gtagcctaag cctagagccg caatattacc
    12661 aaaacacttc acggaattat tggtaaacaa aagacaggtg tgagcctctc caagagcggc
    12721 tgtctcagta gttagatttg ttccaagatc gacatacggt agattctcac ccatctcatc
    12781 ggattcatcc cccatatcct caatattacc aattcctagt tggcctgctg tattgttccc
    12841 ccaacacttg accatgccta attcagtcac aacacatgtg tgactccaac cagaaaaaat
    12901 gttagcaacc tcattattct gaatggaatt agaactagga gggagttgat caatggctgt
    12961 agtttcttca cttgattcga agccattcag agtgtagcct gtttgcgcca tcgtaatcat
    13021 caaaaaaacg agcaccaaag aacgagtttt gagaatatag cgactgctca tatatttaat
    13081 ttaaaattga aaacatatga ctattggacc gatgatgaac gggtcatata aatgagaaca
    13141 ggtatagtgg gacatacggt cccatgggga ccgctcgtaa attagggaga atggatagat
    13201 ggtggagttg tcttcgatta ttgcgctaat tggaatcgtt tcgattgctt tagttactcc
    13261 tgggccaaat aatttgaccg ctctaatcca ttctggattg cacggagcac gtgcaaacat
    13321 cccactaatt ggaggaatgg caactggttt catactcttg cagacatttg ttgctatcct
    13381 tgtgaacaac ctgaatgaac tggggaattg ggcgtacatt ctccactgga tcggagtggt
    13441 attcatcatt ctacttgcga ttgtaatcgg tcggcttcgt ccagatttga cgaaacagag
    13501 tgatattccc cgtctaggct tcaaaactgg atttgcaatg caatggatta acggtaaaga
    13561 atggggattt gtcattctct acatgacgct tctactcgat gattttggag ggggagttac
    13621 ggggtcatta tggatcatct ctatcgtaac caccatctgt attcttgcaa tatttgcttg
    13681 gagcgtgttt ggtatgaagc tagaacgttt catgaccaat ccaaaaattg caccacgatt
    13741 gtttccatta ctcggaggat gtcttggcct tctagcgatt gctattggtc tccgaggagc
    13801 atgattaatt gtgttttttt gaccatgaat tgaggactgt ggactccccc ttctggagat
    13861 gttcagatac cgtggcctgc ttcaaaccga ctgcttcagc aatgtcacgc tgagtacacc
    13921 ctctagggta tcggtagtac cccaattcga tggctttgag caataccttc tgccttctag
    13981 gtggcatatt actcatgttt actggtgtta ttttactatc atccgactcc aataatgagt
    14041 atgacattct ttcaggaagt gcttgggcaa ttctcatcat ctccttaatg gaacttggaa
    14101 taccactgat tgtcaccttc aaaaaatcag gagttacaat tgttggatga gtaatccaaa
    14161 ggctatctaa agaggcgact ttgcgagtga acggccctcc cagagttacg attgcgagag
    14221 actcattctc accttcggtc aaaatatcgg tgatgcgaag tgcctcgatt tcctcatact
    14281 catggagtgg ttgttgatgc ttgagtttcg caataatact ggcggggggg tttttactgc
    14341 ccgcttgata attcgaaata aattcaactg aatcaaagaa tttcagtaaa tgtgctcctt
    14401 cgaggtttcc gaagttctcg gcagtgacac ggaactggag tagtcttgtc ccaccggcca
    14461 tggtcgaccg ttcatgaatg gcttgaataa ggttcggcta tgcaaacctc tgaatgacta
    14521 tcaaagtcca tttcgcttct ttgaaaggtt gttcgaataa tggtagatca tcttgagcat
    14581 tcggagccag gactcaatgc cgtccttctt catcttctct tgcaactgat cgttcttaat
    14641 caggacatca ccccagatat tcgcagcggt gcccttctta cccttaggaa gttggaatgt
    14701 gtcgttgagg gttggctcga gtaggctctt ccatacagcg ttggggttga ctgcacaagt
    14761 aacctcaaca atgacttcgt tgggcttgac tcccgtgcct tgctgccatg agcctggccc
    14821 catttcggct aggaatggta ggcaaagatc gagcacttgt agaccagtga ctggatctgc
    14881 tccggtgagc tcggtgaatg cggttcggag cttcgcacgg tctgcgccct tctgaccagt
    14941 ttgagaacgg agatcatcaa ttgtagtcgg cactaggaag cggatatccg tgtagtaaac
    15001 aagaggctcg tcagatgaca tcggtgagaa gagtttctga tacggagcgc ccccgccacc
    15061 ttgatcggtc acgagattga gagggtaaac cgtcttgaga gcgtttgtag cgacgctctg
    15121 gatgagtcgg cgcattagac gctggggtgc agcactaact tcgttgaaag ttgccctgta
    15181 ctcctccatc tgaagaattt cgtaaccacg aactgccaat agtgaatgga ctgtagcgcc
    15241 ctgctgtact ccgtcttctc caccccagtt tgcctgagaa acccagcgtt ggccacgagc
    15301 cttcgagctt ggagtaatca aatctgcata ctgactcatg cgtcgagaca cgcggttctg
    15361 gaagtcggct tgatcgagtt tggtgaatac tgttgcctga taattgccct tcaatgcatg
    15421 gtctgcgacc tggctagcat tcacgctggt aagcaaattc gcctgatcct gtgggtaaac
    15481 gaggaggcga cggcgccctg cgccttcgcc gagtgtaccg atgttcggat cggtgagaag
    15541 gtagccgaga gttgctgtat actcgaagag gcggccatag cggtcttcat cacttgcacg
    15601 ttgaacccat tcatcgagtc ctggctcgac aatatgcatt tcaagaggta ccagatcaga
    15661 accaccacca aacatctgac gaactgtggc ggagttcatc atgcccatca tcgtgtaaag
    15721 cgatgtcttg ccagatgtca ggaagatgtc tgtaattcca tcctcaccaa acgaatctcg
    15781 acgatcaggc atgttcacga ggaggttgaa tgcggatgga gtctcccggt taccatttac
    15841 agcttgccaa atccaatcgt aaggttttgt catcaggtag ccgtttgcat cctttccaaa
    15901 tcctgctggt gaataacgaa tccatccaag acgattgttg taagtcacgt ttctgtgcat
    15961 caaagaagga tagtaaacac gctcttgtgg atcagagcca ggtacgacac cacgatggcc
    16021 aaggccccat acgagtggtt cccattctgg gaagccatct tcagtaacac cgaggaacat
    16081 gtgatcgtcc cctggaatct caaagtcagt cgggtctgct cgaacactca aagcactacc
    16141 catgcgatct tcgtcaccag tagagcagaa tacgagagtt tgcgttgtaa caacctgagc
    16201 tggagtccac atgttggcct gtagaatggt cttctgcttg acccagtcag acattgtatt
    16261 gaggtcgcgc tcgaaccgga agcggtccga ctcaatccaa cttgagccga gaatgatgtt
    16321 ggtgttgagg aacttcggta ctccctttcc gatatagcgg cggcgagggt cttctgttgt
    16381 catgtcagta ttcatctgcg gtgcccaagg acctgaacgt gggatgtatt ggaggaagtc
    16441 ctcgtcatca aaagcatgag attggggggc tgcgacgcct cgctcgacca ttcccatcaa
    16501 ttccacatag gtttccatgg gctggattcg gcggtttgtt cggaggtatt catcagagat
    16561 tgatcggtgt tcccacatgt tattcacgct cagaatttct tggttggatc ctcgtgctca
    16621 actggattaa cacccggctg agggaggaat ggtaggggca catgaccagt aaggaggatg
    16681 ccaataatgg tctgaatcaa gcccagaagg acctggattg catcgaacga gttctcggtt
    16741 tctccaaaat cgattccaag accgaagatg aggaatatga ggccgaatgc agccatgaga
    16801 taaggtgtga tgcgcataat ctcacctacc ctatgctctc ctatgttctc gtggaagtgg
    16861 ttctcgcttt aatatccaat gcgagtcgtg aagattcaga tgcacattga ttcagaattt
    16921 tcgatgcatg tggtcaggtc gtgaatcatc ttctggatca ggccccccat aacgatccgc
    16981 catagacaag tgtggctccg gttcgggctt cggttcaggc tccggttcgg gctccggttc
    17041 gggctccggt tcgggctccg gttcgggctt cggttcgggc ttcggttcgg gctccggttc
    17101 gggctccggt tcgggttcac ttagatctag attgaactca ggtatctcct cggattcaag
    17161 atctggaaaa tctggggctg atggaagttc aatctcctct tccacgataa catcacgtac
    17221 atccattgca gccttgacat acgacgcaat gtagccggct tgaagttcat ccaaaccatt
    17281 tccctctgcc tgaaaatcaa gttcttgctt ttctttgaag gtcattcgtc catcagagaa
    17341 agctgtaatc atcgatgaaa tcaggctacg aaggccttcg gcaccatgac cgtcttccca
    17401 cgattctatg tggtcgccga ttaaggggaa tccttcgaat ccaattgcct caccaaccgc
    17461 tacctctacg ccatccatca tcacaatgga accaatgaaa tcaccatgga ttgcattggc
    17521 cctaatacgt ccttcatcgg taagttcgaa aattgaccct accatccctg tggaacgaat
    17581 ctctccatca ctctccattg cagaaagcgc tacgtgcaag cctttgaggt cgcccatcgt
    17641 tacagcatca atcgcctcat tgtgtgttgg cattgtacct tcaatttcgg ttggttctga
    17701 agctacgtac cgaagatgga ggagaatacg ttcgcgcata gtcaaagttc gcgtatatgt
    17761 cgctaaagga accggttcgg attctagttc tgtctctctt accttcgaaa cgtccgacgc
    17821 aattgtattc atgcgcataa aacgaaagag gattcgaagc agaattacca ccgcaatagc
    17881 cccgcctaaa ccggcggcga gcatagttga gtcagggtcc attcagcacc aatcccaacc
    17941 gaagaacaca cgttccgttc atcaaggatt gcaggtaaaa gaaggaattc gacccatccg
    18001 aaagttccgg agaacaatcg gatgagccgg gggatcctgc aaaaagcagt ctaaggagcg
    18061 atcgaaaccg cttgacctga cacttagtga tcaaacctcg agttcgtcga ggatgccgtc
    18121 cccgtcatcg tcagcatcga ggtggtcctc aacgccgtcg ttgtcgtggt cgaactgacc
    18181 ggtcatgtcg ttgccatcgt tggtctcgaa ccagtcggaa aggccgtcgt tatcgtcgtc
    18241 cgtgtccgtc ttgtcctgga gaccatcgtt gtcgtggtcg tagcgccact caccggtgac
    18301 accatcgaac tcgtcaacgt cgaggatctc gtcgttgtcg tcgtccgggt caactccatc
    18361 atccatacca tcgttgtcat ggtcacggga gtaatcctcg ccgttgggtc ccttgtcgtt
    18421 gatgttatcg attccgtcgt tgtcgatgtc gaggtcgagg ttgtcggcta ggccgtcatt
    18481 gtcgtgatcg tagatgtccg tgttagggtc accatcgttc acttcctctt catcgtcgat
    18541 gccgtcgccg tcatcgtcgc tgtcctcagc atcatcgatg ccgtcgttgt cgtggtcttc
    18601 cgggctgtca tcgacactgt ctgggatgcc atcgttgtcg tcgtcgttat ccgcgtcgtc
    18661 tgggatgccg tctccatcat tgtcgttgtc gccgttctgc tcctggttgt cgagctgctg
    18721 tccttgctgc tggtcggatt gctgaccctg ctggccttgc tggccgttct gggtctggcc
    18781 ggtctgctgc tggttctgac cgttctggtt gtcaccgttc tggttctgct gatcctggcc
    18841 accttgctgg gcgccttgtt cgccgccctg ctgttgctga ccctgaccat tgtcctgctg
    18901 ctgaccttgc tgaccttgct ggccctgctg annnnnnnnn nnnnnnnnnn nnnnnnnnnn
    18961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    19021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    19081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    19141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    19201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    19261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnctgacctt gctggccctg ctgaccggac
    19321 tgttgtcctt gctggccctg ctgaccttgc tggccctgct gaccctgctg gccctgctga
    19381 ccttgctggc cctgctgacc ctgctgacct tgctggccct gaccttggcc ctgacc
//
LOCUS       DUKB01000013            3795 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_333609, whole genome shotgun sequence.
ACCESSION   DUKB01000013 DUKB01000000
VERSION     DUKB01000013.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3795)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3795)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3795
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_333609"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1519)
                     /locus_tag="HA345_00595"
     CDS             complement(<1..1519)
                     /locus_tag="HA345_00595"
                     /inference="COORDINATES: protein motif:HMM:NF024910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HIH83884.1"
                     /translation="MVGSGLFVLPALAGKELYYGSGGISGSYAGLWLAYLLSGLVVLP
                     GAVSQAEFASTMPTSGGTYIYIERTFGAISGTIAGLGLWASFLLKSAFALIGFSAYVV
                     VIEHTIGIQFDDTSAKFMALFLLVIITMINIRGVGLLKKIQTPILMISVGSLILLCIY
                     AFIGGAASKPMVPLDAAIELVQTTDGWIGLGSAAAYVFVAYAGVIKIAAVAEDVIEPG
                     RNLPLGMFWALGIAMILYSGMAYTMFAVLGGADVGIVEGGVADKAPLYILTETIAGSS
                     AAFIVAILAIFTMSGGGLTGLLASSRFPFAMGRDKLLPPSFEDVHPMFETAHISIYVT
                     AITMALSILFLDVGTVAKLASGFMIMVFVAVNLCVIVLRRVEGEHTWYKPEYRPKTGS
                     WIQIWGITSGIALVALMGSEAFIGAGAAIVGGLGLYYSYGHNHTITKETPWHSFTSRI
                     TGNETERKRAVTAFHAADIEGNNHLNLTEFSAAISSLGWLENKEDIRDCFHNVDVN"
     gene            complement(1615..2274)
                     /locus_tag="HA345_00600"
     CDS             complement(1615..2274)
                     /locus_tag="HA345_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019464258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83885.1"
                     /translation="MGQHNRYDGEVLAYEALHGSGGAVISLNPTKGSSGDKEFDEDDV
                     EYYRGDRNVIDSDSSVEVSETTSANSVGSIKSHTVPEGAIIETSAAPKAVGAYPHARR
                     VGELLYLSGVGPRQAGTDEIPGGAIRTQEGVPQEYDIKAQTEACIANVKAILEASGAS
                     LSDVIDITSFLVDMERDFSGYNEVYAKHFTSVQATRTTLAITALPTPIAVEMKVIARI
                     R"
     assembly_gap    2780..3094
                     /estimated_length=315
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3095..3348)
                     /locus_tag="HA345_00605"
     CDS             complement(<3095..3348)
                     /locus_tag="HA345_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83886.1"
                     /translation="MSDDSPIVMGIWGPPHPHPLLAPEKNAGWGKLRAAYEQLRERIE
                     ESDADAIIVYSTTWPSVIGHQVQCRENPEWTHVDDDFHALG"
     gene            complement(3345..3764)
                     /locus_tag="HA345_00610"
     CDS             complement(3345..3764)
                     /locus_tag="HA345_00610"
                     /inference="COORDINATES: protein motif:HMM:NF014899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83887.1"
                     /translation="MGEQMHELGQACKRAIKASGKKVVLLSSNSLSHRHFVTESDVPE
                     DMSKEHIYNHSQYLWDMRMIELMREGRTREMVQLMPEFTEQSIAETDAGGLSWLMSAL
                     DYPDYSADVHAYGTVIGTGNAIVEWDPRERATLQVSP"
BASE COUNT          844 a          883 c          851 g          902 t
ORIGIN      
        1 gatttacatc tacattgtgg aagcaatccc ggatatcctc cttattttca agccagccga
       61 gagaacttat cgctgcgcta aattcggtga ggttgaggtg gttattacct tcaatatctg
      121 ctgcgtggaa tgcagtcaca gcacgcttgc gttcggtttc gttacctgta attcgcgagg
      181 tgaaggaatg ccacggtgtt tcttttgtta tcgtatgatt gtggccgtag gaatagtaga
      241 gtcccaatcc tccaacaata gcagcacccg caccaatgaa ggcttcggaa cccatcaggg
      301 cgacgagggc aataccacta gtgatgcccc atatctggat ccaagaacct gtctttgggc
      361 gatattctgg tttgtaccaa gtgtgctcgc cctcaactcg tcgaaggaca atcacgcaga
      421 ggttgactgc gacgaatacc ataatcatga atcctgaggc aagttttgcg acagttccta
      481 catccagaaa gagaatagat agtgccatcg taatcgcggt cacatatatc gaaatatgtg
      541 ccgtctcaaa catcggatgt acgtcctcaa aagagggggg taggagtttg tctcgcccca
      601 ttgcaaaagg gaatcttgag gaggcaagaa gtccagtcaa ccctcctccg ctcatggtga
      661 aaattgcgag aattgcaaca atgaacgcgg ctgaacttcc cgcgatcgtt tccgtgagga
      721 tatagagggg cgccttgtct gcaactccac cctctactat gcctacatct gccccaccaa
      781 gtacggcgaa cattgtgtaa gccatacctg aatacagaat catcgcgatt ccaagagccc
      841 agaacatacc tagaggcaaa tttcgtccgg gttctatgac atcttccgca acggcggcga
      901 ttttgattac ccctgcatat gcaacgaaga cataagcggc tgctgaacca agcccaatcc
      961 atccgtctgt tgtttgcacg agttcaatgg ccgcatccaa aggaaccatt ggcttggagg
     1021 cagcccctcc gatgaatgcg tagatgcaaa gaagaatgag ggagccgact gagatcatta
     1081 gaatcggcgt ctgaattttc ttgaggagac caacaccacg gatgttaatc atcgtgatta
     1141 tcacaaggag aaatagtgcc atgaatttcg cactagtatc atcgaattgg atacctatgg
     1201 tgtgttcgat aacaacgacg taggcactga atccgatgag tgcaaaggcg gattttagta
     1261 gaaaggaggc ccaaaggccg aggccggcaa tcgtaccact aatcgcccca aatgtccgtt
     1321 cgatgtagat ataggtccct cctgatgtcg gcatcgttga ggcgaattca gcctgcgata
     1381 ccgcgcctgg aaggacgacg agtccagaga gtaggtatgc gagccaaagt cccgcatatg
     1441 atccagaaat cccgcctgac ccgtaataga gttctttgcc agctagagct ggaagcacaa
     1501 acaggccact gccaaccatc gcggagaggg aaaggataac gattcccttg aggcttagag
     1561 tacgggtaat gatggaatca aggtcaagtt tcttttttgc cagattatca ccccttatct
     1621 gatacgtgca atgaccttca tctccactgc aattggtgtt ggtaatgcag ttattgccag
     1681 tgttgtccgg gttgcttgaa cgctggtaaa gtgcttagca tatacttcat tatatcctga
     1741 aaaatcacgc tccatatcta cgaggaagga ggtaatatcg ataacatcgg atagagacgc
     1801 gccacttgct tcaaggattg ccttcacatt cgcgatgcat gcttcagtct gtgctttgat
     1861 gtcatattcc tgtgggactc cttcttgcgt gcgtattgcc ccacctggta tctcatcggt
     1921 tccggcctgc cgtggaccga ctccactcag gtaaaggagt tcgccaacac gtcttgcgtg
     1981 agggtatgct ccgactgcct ttggtgcggc tgatgtctcg ataatcgctc cttctggcac
     2041 cgtgtgtgac ttgatgctcc ccactgaatt agcactcgtt gtttcactta cttctacaga
     2101 tgaatccgag tcaatgacgt tacgatctcc tcgatagtac tcgacatcgt cctcatcgaa
     2161 ttctttgtct ccggatgagc ccttggttgg attcagagaa attacagcac cacctgatcc
     2221 atgcaatgct tcgtaggcta ggacttcccc atcgtagcgg ttatgttgcc ccatcgctga
     2281 agccagccac catgctggtt tgaatgcgac aaccttctgc actctgattt gggagtggat
     2341 atctcgagat aattgactga tatcctcaag acgtccttta gcgaaaaatt ccaaaatctt
     2401 ccgattccat tcgtcgtctt tctgagagtg aatccggtca tcttcaggtt cgatgtgttt
     2461 cgtgaacatg cggtttgaga gcgatgcgac aacgacggct acagctttct tgccttgagc
     2521 cttcagtaca tcagtcgtgg cctttccgag gacgattgtt tctgcccgat tggcatacat
     2581 gttactcgaa agtatggtca ctggaagtct gttgtctggg ttcagtaggc tgagtgccac
     2641 gatgctccct gtgtcaatcg ggaaaccatg gtagtccact cctcgcatgt gtagtccgcg
     2701 tttttcaccg gcctccacta tcccgttcgc aagatcaaca tcgaccttga acgagtaagg
     2761 catcgaacct agagcatgan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncctaga gcatgaaaat catcgtccac
     3121 atgtgtccat tctggattct cgcggcactg gacttggtgt cctataactg agggccaggt
     3181 agtagagtag acgatgattg catccgcatc actttcttcg atacgttccc gaagttgctc
     3241 gtaagcagct ctcagtttcc cccatcctgc atttttttcc ggagctaaca aggggtgagg
     3301 atgaggtggc ccccaaatcc ccatcacgat gggagaatca tcactcacgg gctcacctga
     3361 agtgtcgcac gttcccgagg gtcccattca acgatagcgt tccccgtgcc gatgacggtg
     3421 ccgtaggcat gtacatctgc actgtaatcg gggtaatcaa gcgcagacat caaccacgag
     3481 agaccgccag cgtcggtttc agcgattgac tgttcagtga attctggcat caactgaacc
     3541 atctcacgtg tacggccttc acgcatcagt tcaatcattc gcatatccca taggtattgg
     3601 gaatggttgt agatgtgctc tttgctcatg tcttccggta cgtcggattc agtgacgaag
     3661 tgacggtggc tgaggctatt actggatagt agtacgacct tcttaccact cgccttgatg
     3721 gcgcgtttgc aagcctgacc aagttcatgc atttgctcgc ccatgacctc tgccgagtag
     3781 tagtgtgtag atcgt
//
LOCUS       DUKB01000014            3197 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_196629, whole genome shotgun sequence.
ACCESSION   DUKB01000014 DUKB01000000
VERSION     DUKB01000014.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_196629"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2392)
                     /locus_tag="HA345_00615"
     CDS             complement(<1..2392)
                     /locus_tag="HA345_00615"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH83888.1"
                     /translation="MVERRLSVLLVSLFLIPLIPLGNEMAEMDASEVTQWTSDEAASH
                     WSIGGSPILEESSLRAATGILHPVTGSFDPLISTPILPEGLHDDLDVVSTGFLIVQDI
                     DADLSDLMGWLSMQGYELLDVFPDDALLIRLPTDPARLDAAVSAIAANEGIRWFGSQH
                     PGWRLSPNLQTEGVQSVNIIPAPDLDGDDLLFLETTLSQLSPERSHCDAWLCQADALD
                     IPSLLEIAKSGLVLFIEPAPDLVLENLYARSVTGVTAIVGSTNPGLTGQGQVIGISDS
                     GIDQDHGDFNGRIRGVYNQYGPDNSAADTNSGHGTHVTATILGDGSGDSSTKGMAPNA
                     TFHFYQLEYDQTGALARYGSLFDMFRHSWQQNARVQSNSWGSENLGGQYNSDSRSADS
                     FTNQYDDFLVLFAAGNEGANGASSVSPPSTAKNVLTIGASTSGRPGTSPSGQVAGFSS
                     IGPTLDGRIKPDLVSPGVQICSARAQEAQSPMGSSCSSARHVDGSTPLYQSMDGTSMA
                     TPAAAGNVLLVRQFLFEEFSIASPRSDLLKALMINGAKDLGASDIPNMDEGWGQIDLE
                     QTLYPKDGIVPLNTFMDWNQSLDPGYSYVYTYDWDASHGIDVTIAWNDAPGSSSASQS
                     SSRLVNDLDLTVIAPDGASYRGNVFSQGVSTTGGSYDRANNVERVHIPPSNGLSGSWQ
                     VRVSHAGGGAQDFAMTATSIGSENMIPDLAVFSGSLWASADSPLEGDAVVIRAAWLNQ
                     APGEASGYDIVIEDISTVPPTEILRSTRASIAGGSADSISTQHTFQTTGIHTLRLTL"
     gene            complement(2450..>3197)
                     /locus_tag="HA345_00620"
     CDS             complement(2450..>3197)
                     /locus_tag="HA345_00620"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:NF003251.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HIH83889.1"
                     /translation="LAKYKAAGIKHIFQGGEKHALTGRSYTSSANHADNLGVDGTRVV
                     SCNTTGLSRTLVPLYEHCGSLKVECTMIRRAADPGDSKKGPINAIAPVLKVPSHHGPD
                     VMTVKPEIEINSLAVAVPTTIMHVHAIVADLPEGHGLTTESVLEMWRNTPRVIIMSGA
                     GDRITTTAEVMEMARDIGRKWGDLHEIFVWEDGVKLNGDRLYYFQAIHQESDVIPENV
                     DCIRAMMNTEADWRASVAKTDAAISAYYGL"
BASE COUNT          859 a          802 c          809 g          727 t
ORIGIN      
        1 ccaaagtcag acgcagggta tggataccag tcgtctggaa ggtgtgctga gtactaatgg
       61 aatcagctga accaccagca atagatgcgc gtgtagagcg aagaatctca gttggcggaa
      121 cggttgagat gtcctcaatg acgatgtcat atcctgacgc ttccccgggc gcctggttca
      181 accacgcagc acgaatcaca acggcgtcgc cttcgagagg agaatctgct gaggcccaaa
      241 gagaaccgct gaataccgca agatcgggaa tcatattctc cgaaccaatc gaagttgcag
      301 tcatggcgaa atcttgagca ccaccgcctg catgagatac tcgaacctgc cacgaacccg
      361 agaggccatt ggatggaggg atatggacac gctcgacatt gttagcccgg tcatatgatc
      421 caccagttgt gcttacaccc tgtgagaata cattgccacg ataggaggcg ccatctgggg
      481 ctataactgt caaatctaaa tcgttcacca atcgagatga ggattggctt gcacttgaag
      541 aaccaggagc atcattccaa gcaattgtta catcaatacc gtgagatgca tcccaatcgt
      601 aggtatagac ataggaatat cctggatcga ggctttgatt ccaatccatg aaggtattca
      661 gaggcacaat cccatccttt ggatacaatg tctgttcgag atctatctga ccccagcctt
      721 cgtccatatt cgggatatct gatgctccga gatccttggc cccattaatc atcaacgcct
      781 tcagtaagtc ggatcgtgga gaggcgattg agaactcttc aaagaggaac tgccgaacga
      841 ggagcacatt acccgcagca gcaggagtag ccatagaagt accatccatc gactggtata
      901 gaggagtgct gccatcaacg tgccttgcgg aggagcagga ggaacccatt ggagactgtg
      961 cctcctgtgc tcgtgctgaa caaatctgga ctccgggcga tacaagatcg ggttttatgc
     1021 gaccatcgag ggtaggccca attgaggaaa atccagccac ttgacctgaa ggagaagtac
     1081 ccgggcgacc actggttgag gctccaatgg tgaggacatt cttcgcagta gatggagggg
     1141 acacgctgct agccccgttg gctccttcgt tgcccgcggc aaacagcact aggaagtcat
     1201 catattgatt tgtgaacgag tcagcagaac gtgaatctga attatattga ccaccaaggt
     1261 tctcagaacc ccaagagtta ctctgtactc tagcattctg ctgccacgag tggcggaaca
     1321 tatcgaatag cgaaccatac cttgcaagag caccagtttg atcatattcg agttgataga
     1381 aatggaacgt ggcatttggc gccataccct tcgtggaaga gtcgccagat ccgtccccaa
     1441 ggatggttgc cgtcacatgc gtaccatgtc cggagttggt atctgctgca gagttatctg
     1501 gaccatactg attgtacaca ccacgaatcc gcccattgaa gtcaccatga tcttgatcga
     1561 tgccactatc agatatacca atcacttggc cttgcccagt aaggccagga ttggtggagc
     1621 caacaattgc tgtaacacca gttactgaac gtgcatacag gttttccagc acgagatctg
     1681 gagcaggctc aatgaacaat actaggcctg acttcgcaat ttcaagtagc gaaggaatat
     1741 ccagagcatc ggcctgacat agccatgcat cacaatgaga tctctcaggc gataactgcg
     1801 agagtgttgt ttcaaggaaa agtaagtcat ctccatctag gtcgggtgcc gggatgatat
     1861 tcacagattg tacaccctct gtctgcaagt tcggagaaag acgccaaccg ggatgttgac
     1921 tgccaaacca tcggataccc tcgttagcag caatagccga aacagctgcg tcgagacgag
     1981 caggatcagt gggcagacgg atgaggagtg cgtcatcggg aaatacatcc agaagctcgt
     2041 agccttgcat cgaaagccat cccattagat cgctcaaatc tgcgtctatg tcctggacaa
     2101 tcaagaatcc cgtggaaaca acatcaagat catcatgaag gccctctggg agaatgggag
     2161 tggaaatcag tggatcgaat gaaccagtga caggatgaag gattcctgta gcggccctaa
     2221 gtgacgattc ctcaaggatt ggagaaccac caattgacca atgagatgcg gcttcatcgg
     2281 atgtccattg agtaacttca gacgcatcca tctcagccat ttcattgcct aatggaatca
     2341 atggaatcag aaagagtgag accaataaaa cgctcagtct acgctcgacc atgggttgcg
     2401 agggcgatgc cccccttttc atggttttat gaggatgtgt ggattctgct cagagaccat
     2461 agtatgctga gattgcggca tctgtcttgg cgacacttgc acgccagtcg gcttcagtgt
     2521 tcatcatagc acgtatacaa tccacattct cagggataac atcgctctcc tgatggattg
     2581 cttggaagta atagagacgg tcaccattga gtttgacacc atcttcccag acaaagatct
     2641 cgtgtaaatc gccccacttg cgcccgatgt ctcgagccat ttccatgacc tctgccgtag
     2701 tagtaattct gtcaccagcg ccactcatga taatcacacg aggagtgttg cgccacatct
     2761 caagaacaga ttctgtggtc aagccgtggc cctctggcaa atctgcaaca atcgcatgga
     2821 cgtgcataat tgtcgtagga acagcaacag caagtgaatt gatctctatc tccggcttaa
     2881 cagtcatgac atcaggacca tggtgacttg gaaccttcag taccggtgcg atggcattga
     2941 ttggaccctt cttagaatca cctggatccg cagctcgacg aatcattgtg cattcaacct
     3001 tgagagagcc acagtgctcg tagagaggaa caagggtccg ggatagccca gtggtattgc
     3061 aagatactac acgggtacca tctacaccaa ggttgtccgc atggttagcg ctagaggtat
     3121 aggaccgccc cgtgagcgca tgcttctcgc ccccttggaa gatgtgcttg atacctgcgg
     3181 ccttgtactt ggcaagg
//
LOCUS       DUKB01000015            6004 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_221434, whole genome shotgun sequence.
ACCESSION   DUKB01000015 DUKB01000000
VERSION     DUKB01000015.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6004)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6004)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6004
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_221434"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..871)
                     /locus_tag="HA345_00625"
     CDS             complement(<1..871)
                     /locus_tag="HA345_00625"
                     /inference="COORDINATES: protein motif:HMM:NF016310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF521 domain-containing protein"
                     /protein_id="HIH83890.1"
                     /translation="MRIPSELASMLNGEQGPTRQKAARLVVDLASVAGAKNFIRCSDA
                     HVSGVSVLTGGHGLRTFLVDLIKDSTGTVVIPTTLNSAGCDHEKMDEMDIEHQNFLEQ
                     QFEIIHAYMQLGIKATLSCTPYDRGIETPEGIGSWAESNAVCFSNSYTSLITNRESGL
                     SALATALTGWAPEWGLHLEGNRLPNLLVEVEVDLSDATDWSVLGDWIGAQRGSHWRMP
                     FGPIPVIRTQNKDPTFEMRKALTAAAANHGCPMLWLNDEDADLSNIQDTLVFTSEHLD
                     TSYANLAPKGEVDL"
     gene            complement(929..1354)
                     /locus_tag="HA345_00630"
     CDS             complement(929..1354)
                     /locus_tag="HA345_00630"
                     /inference="COORDINATES: protein motif:HMM:NF020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83891.1"
                     /translation="MSRILSFSVDNSFADELAKMVRDTGYRNRSMFLRDASIHFSDSK
                     RRGELNEMDYNVEITGTLVIYYQHEVEHRLLDLRHSDLITVQSYHHNCLPESHMCVDT
                     MQIKANAGDLREAMSELQDNSGVDRIGFTLAPIRTSGCC"
     gene            1446..>3323
                     /locus_tag="HA345_00635"
     CDS             1446..>3323
                     /locus_tag="HA345_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011364564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83892.1"
                     /translation="MIAILLVATSLAGCLSTEDNVEKDTVYTSTWHVQDLVENIAGDF
                     VNVELLAPTNVPVHDYEPTSTDLLYLRDADLFFYHGLGLETWVNTTLESMGDDAPKFV
                     EVHTLPAGSIALEYEAMMVSDLCEHLTDGPFESSNLSEMGATGEIHAEHVAHRLSFPM
                     SFDDVHWLDDDHSDEEGGHDDHSDEEGGHDDHDDHDLHAEHNHLVPEETMDDPAGCPD
                     DTVIHVYHMEEGHYLLEFAAWEGGENFDMSVMKKPGGHAHHDNHGHGEHSDEGDDHDD
                     HSDEGDDHDDHSDEERDHDDHDGHHDDDVDMTPELAIQEYDMDNNSLISWDEFWHAWI
                     EDDHEFYDGCTVSSDSNDSHYECWMQEWLNADGSINGTDGYEEDECTEVTNSTTGATD
                     GWECEHHDGDHDDHWDSNTCHDTVTHETHDEYTNEEDCEAAGHMWMGDEEHEGHEDEG
                     VCYNSEMNMISGMDNETTCGSYAYMTNMSWGDMTFTGCYNPVSHAADPNMSAATCDAF
                     MWMQQDDVDEINQLMAMFTHADTNADSQLDITELEHFIEALGALERSHGADFDECHDG
                     MHCFISIHIEAEGDYGFALPHDAEMHVIARDHDDHDGHSDEERDRDDHSDEEGDHDDH
                     SD"
     assembly_gap    3324..3748
                     /estimated_length=425
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3749..4352
                     /locus_tag="HA345_00640"
     CDS             <3749..4352
                     /locus_tag="HA345_00640"
                     /inference="COORDINATES: protein motif:HMM:NF013465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HIH83893.1"
                     /translation="GDHDDHSDEEGDHDDHGEEELGRFDPHSWLDPLSYRAQAALVRD
                     ALIEAFPEGEADFTANAEAYMAELLTLHEEFSSALAACEAKDIAANHNAYAYMAERYD
                     LQFVTVHGLDPEGEPTAADIAEVVETIEEGDISIFYVEEFTDPDSVSSLVEQSKSDTM
                     PEGVTLMTLHTMELPPKDSNDGYVDLMKENLDNILAGMTC"
     gene            4420..5211
                     /locus_tag="HA345_00645"
     CDS             4420..5211
                     /locus_tag="HA345_00645"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HIH83894.1"
                     /translation="MSDMDPLISIRGLQVHRGGELVLDDIDLDVHRGDFVGVVGPNGS
                     GKSTLLLTIIGELQPTEGSITVFGNQPGSLANRGRIAWVSQAAANLPHNLRITVRELV
                     GLGTLTWRNMIRPNRTERMERVNNAIQMVGLEALADCDIRHMSGGQRQRAVVARGLAS
                     NAEVLILDEPLVGVDRTSRTDFLRFLEDLCRTEKKTLLMVTHDHTAISRCTHCAVCID
                     GNVHVDEEMKTDPNPLMLSNLRGNLNPKDALNLTFSKAIQSEEAE"
     gene            5211..>6004
                     /locus_tag="HA345_00650"
     CDS             5211..>6004
                     /locus_tag="HA345_00650"
                     /inference="COORDINATES: protein motif:HMM:NF013143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HIH83895.1"
                     /translation="MGLGTLLLTFLSPMLEFLAPYLPGDTFPLYFEWEMFQRALLAAL
                     LISIVAGLYGTFLMLRNLALIGDGLAHVSFGGMAVGVALGSVTPLNTALLFSIVAAII
                     IYELQSREILTGDTSIAIFLTSTLAFGLVVLSKWGDGITTDIEAYLFGSLNMIDPASL
                     DMITLLSLFSLVSLAVLHRGLLAMTIDSVAARVQGIPVNFIGLWFSITIAIIVVSMVK
                     LVGVLLVSALLVTPAATAQIISRSFRGCMLWAQAFGLSATFLGIYFA"
BASE COUNT         1397 a         1307 c         1388 g         1487 t
ORIGIN      
        1 ctagatcgac ttcacccttt ggtgcaagat tggcataact agtatcaaga tgttcagagg
       61 tgaagactaa ggtatcttgg atattggata aatccgcatc ttcatcgttt agccatagca
      121 ttgggcaacc atggttcgca gctgctgctg tgagggcttt tcgcatctca aaggtcgggt
      181 ctttgttttg ggtacgaatc acaggtattg ggccgaatgg cattcgccag tgagagcctc
      241 tttgggcacc tatccaatca cctaggacac tccaatcagt tgcgtccgat agatctactt
      301 cgacttctac caacagatta ggaagtcgat ttccctctaa gtggaggccc cattcaggag
      361 cccatccagt tagtgcagtt gcaagtgctg agaggcctga ttctcgatta gtaatcaacg
      421 atgtgtagga gttagagaag cagaccgcgt tagattcagc ccaagaccca atgccttccg
      481 gcgtctcaat accgcggtcg tagggggtac acgaaagtgt cgccttgata cccagttgca
      541 tgtaggcatg tataatctca aactgttgtt cgagaaagtt ttgatgttcg atatccatct
      601 cgtccatctt ctcgtgatca caacctgcac tgttgagagt agttgggatt acgacagttc
      661 cggttgagtc tttgatgaga tctactagga acgtccgtag cccatgccct ccagttagga
      721 cactaacgcc actaacgtgt gcgtcagagc atcgaatgaa gttcttggca ccagcgactg
      781 atgcgagatc cacgactaat ctcgctgcct tctggcgagt tggcccttgc tctccattca
      841 gcatggaggc caactcactg ggtatgcgca tacctatgcc ttccagagcg aatccttcaa
      901 cctgcgggta atcggttagc aactaggctc agcaacagcc cgaagttcga attggggcca
      961 aagtgaatcc gattctatct acacctgaat tgtcttgcag ttctgacatg gcttccctca
     1021 aatctccagc attagctttg atttgcattg tatcaacaca catatggctt tcaggtaggc
     1081 aattatggtg gtaggattgt acagttatga gatccgagtg tctgagatcc aacaatcgat
     1141 gctctacttc atgctgatag tagataacga gtgttcccgt aatttcaaca ttgtaatcca
     1201 tctcattcaa ttctccacgg cgctttgaat ctgagaaatg aatactagca tctctgagaa
     1261 acatactccg attcctatat cctgtatccc taaccatctt tgccaactca tctgcaaagg
     1321 aattgtccac gctgaaggat agaatacgac tcatggaatg ccgaatcggc cggaattaat
     1381 aacatttgtt aaatatgtaa tattgtcccc gccggcttat gacctacccc aaggctcgtc
     1441 cgataatgat tgcaattttg cttgtagcta ccagccttgc cggctgtctg tctaccgaag
     1501 acaatgtcga gaaagatacc gtatacacct caacttggca cgttcaagac cttgtcgaga
     1561 atatcgctgg cgatttcgtc aacgtagaat tactcgcacc tactaatgtg ccagtgcatg
     1621 attatgagcc aactagcacc gatttactct accttcgcga cgctgacctt ttcttttatc
     1681 atggtcttgg acttgagaca tgggtcaata caacgctcga atccatggga gatgacgctc
     1741 cgaagttcgt tgaagtccat actcttcctg ccgggagcat tgcccttgag tacgaggcaa
     1801 tgatggtttc agatctatgt gaacacctta cggacggacc ctttgagagc tcaaacctct
     1861 ctgaaatggg tgcaaccggt gaaattcacg ccgaacatgt cgctcatcgc ttgtctttcc
     1921 ctatgtcgtt tgatgacgta cactggctcg atgatgacca ctcagacgag gagggtggcc
     1981 acgacgacca ctcagacgag gagggtggcc acgatgacca cgacgatcac gatcttcacg
     2041 ctgagcacaa tcatctagtt cctgaggaga ctatggatga cccagcgggt tgtcccgatg
     2101 atactgttat tcacgtatat cacatggaag aggggcacta tcttctagag ttcgccgcat
     2161 gggaaggtgg cgagaatttc gacatgtccg ttatgaagaa gccaggaggt cacgcccatc
     2221 atgacaacca tggccatgga gagcactctg atgagggtga tgaccacgat gaccactctg
     2281 atgagggcga tgaccacgat gaccactctg atgaggagcg cgatcatgat gaccatgatg
     2341 gtcatcacga tgatgatgta gatatgactc ctgaacttgc gattcaagaa tatgacatgg
     2401 ataacaatag cctcatctct tgggatgagt tctggcacgc atggatcgaa gacgatcatg
     2461 aattctatga cggttgtacg gtttccagcg attctaatga tagccattac gagtgctgga
     2521 tgcaagagtg gttgaatgct gatggtagca tcaacgggac tgatggatac gaagaagacg
     2581 aatgcactga agttacgaat tcaaccactg gcgccaccga tggttgggaa tgtgaacatc
     2641 atgatggtga ccacgacgac cattgggatt ccaacacctg tcatgacact gttacgcacg
     2701 aaactcatga tgaatacacc aacgaggagg attgtgaggc agcgggacac atgtggatgg
     2761 gagacgaaga gcatgaaggc cacgaggacg agggtgtttg ttacaactct gaaatgaata
     2821 tgatttcagg catggacaat gaaacaactt gcggttccta cgcatacatg acgaacatgt
     2881 catggggtga catgacattc actggttgtt acaacccggt atcacatgct gctgatccaa
     2941 atatgtctgc agctacatgt gatgcattca tgtggatgca acaagatgat gtggatgaga
     3001 taaaccaact aatggcaatg ttcactcatg ctgacacgaa tgctgattca cagcttgaca
     3061 taactgagtt agaacacttc attgaagcgt tgggcgcatt ggaacgctcc catggtgcag
     3121 attttgatga gtgccatgac gggatgcatt gtttcatttc aattcacatt gaggcagagg
     3181 gtgactacgg tttcgctcta ccacatgacg cagaaatgca tgttattgct cgcgaccacg
     3241 atgaccatga cggccactcc gacgaggagc gcgaccgtga cgaccattcc gatgaagagg
     3301 gcgaccacga cgaccactcc gacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnag gcgaccacga cgaccactcc gatgaagagg
     3781 gcgatcatga cgatcatgga gaagaagaat taggacgatt cgaccctcat agctggctag
     3841 accctctgtc ctaccgtgcc caggcggctt tggtccgcga tgcactgatt gaggcattcc
     3901 cagaaggtga agcagatttc actgcaaatg cagaggccta catggccgag ttgctaacct
     3961 tgcacgagga attctcgtct gcactcgctg cctgtgaggc aaaggatatt gcagcgaacc
     4021 acaatgcgta tgcctatatg gccgagcgtt acgatcttca atttgtcaca gttcacggac
     4081 ttgatcccga gggtgaacca actgctgcag atattgctga ggttgtagag acgattgagg
     4141 agggtgacat cagtatcttc tatgttgaag agttcactga cccggattct gtgagttccc
     4201 tagtcgagca gtcaaaatcg gataccatgc cagagggtgt gactctgatg acgcttcaca
     4261 ccatggagtt gccacctaag gattctaacg acggttatgt cgatttgatg aaggagaatc
     4321 ttgacaatat tctcgccggc atgacttgct gagttctaat cgggtttcaa gttgtgattc
     4381 ttacgaatct ctgaaatcag aggtgtcgga gggcctagta tgtctgatat ggatccgctc
     4441 atctccatcc gtggattaca agtccaccgg gggggcgagc tcgttctaga tgatatcgac
     4501 cttgatgttc atcgaggaga tttcgttggt gttgtagggc caaacggtag tgggaagtca
     4561 accctattgc tgacgattat tggagaacta caaccgacag aagggtcaat cactgtattt
     4621 ggtaatcagc ctggttcatt ggcaaaccgt ggccgtatcg cttgggtatc acaggcggca
     4681 gctaatctcc ctcataatct caggattacg gtacgtgaac tggttggcct aggcacattg
     4741 acctggagaa atatgattcg gccaaataga actgaacgga tggaacgtgt caataatgcc
     4801 attcagatgg ttggtttgga ggctcttgct gattgtgata ttcgccatat gtctggaggg
     4861 caacgtcaga gggcagtggt tgcccgcggt ctcgcctcaa atgccgaggt cctgattctg
     4921 gatgagccct tagtcggcgt ggaccgaacc tctaggacgg attttcttcg tttcctcgag
     4981 gatctatgtc gcactgagaa aaagaccctc ttgatggtga cccatgatca tacagcgatt
     5041 agtcgatgta ctcattgcgc agtatgcatc gatggcaatg tccatgtgga cgaggaaatg
     5101 aaaacagatc ctaatccact tatgttatct aatctcagag gaaatctcaa cccaaaggat
     5161 gcgttaaatc tcaccttttc caaagcaata caatctgagg aggcggaata atgggtttag
     5221 gaactttgtt gctgactttt cttagcccta tgcttgagtt tctagcacca tacttgccgg
     5281 gagatacatt tccattgtac tttgagtggg agatgtttca acgcgccctt ctcgcagccc
     5341 tactcatttc aatagttgcg ggcctctatg ggactttcct aatgttgaga aatcttgccc
     5401 taattggaga cggcctcgct catgtttcat tcggtggcat ggcagttggt gttgcccttg
     5461 gatcggtcac tccactcaac accgctctcc tattcagtat agtagcggcg attataattt
     5521 acgagttaca gtctagggaa atcctcactg gagatacttc gattgctatt ttcttgacga
     5581 gcacgcttgc cttcggtctt gttgttctta gcaaatgggg ggatgggatc acaaccgata
     5641 tcgaagccta tctttttggt agcctgaata tgattgatcc agctagtctt gacatgatta
     5701 ccctgctcag tttattctcc ctcgtcagtc ttgcagttct ccatcgcggc ctccttgcga
     5761 tgaccatcga tagtgttgca gcgcgtgttc aaggcattcc agtcaatttt attggtctct
     5821 ggttcagtat caccattgcc attattgtgg tcagtatggt taaactggtc ggggtccttc
     5881 ttgtgagtgc gttgttggtc acccctgctg cgactgctca aattatcagt cgtagttttc
     5941 gaggttgtat gttatgggct caagccttcg gactctcagc aacatttctt ggtatctact
     6001 tcgc
//
LOCUS       DUKB01000016            9225 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_291874, whole genome shotgun sequence.
ACCESSION   DUKB01000016 DUKB01000000
VERSION     DUKB01000016.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9225)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9225)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9225
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_291874"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="HA345_00655"
     CDS             <1..987
                     /locus_tag="HA345_00655"
                     /inference="COORDINATES: protein motif:HMM:TIGR00423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CofH family radical SAM protein"
                     /protein_id="HIH83896.1"
                     /translation="VYFNSNLHVNPTNICVLACRFCAFRRGRKADDAYALSVEDYLSR
                     IRPFSSRIDEVHSVGGLHPDWTVEHYAELIHSAKKAHPHLSMKCLTAVEVKHLSSMSK
                     MTFVEVLSTLKEAGLTSLPGGGAEILDDEIRNIICNGKESSDEYLDIHRTAHHLGLPT
                     NCTMLFGTVEQAEHRIRHLDRLRKLQDDTGGFQCFVPYPFLPDRSRLPQAQHSTGSET
                     IRMIAISRIMLDNIPHIKAYRMNIGDKLAAIALNSGADDVDGTVGHEEIMHEAGSMTS
                     VEDDLDRLSRLIEDAGGIPIRRSTIYNRFQRYIRRPPSDDDRWVALPIAEGV"
     gene            992..1822
                     /locus_tag="HA345_00660"
     CDS             992..1822
                     /locus_tag="HA345_00660"
                     /inference="COORDINATES: protein motif:HMM:NF014658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis protein"
                     /protein_id="HIH83897.1"
                     /translation="MRTDVIGRVSFANCDPLFHGLDPKWKVLPAPPSWLTGHLLRGEC
                     LIAPIPMADLARNADTLCAIDSIGIASDGGVGSVLLFGDCPVEEMRDIAVPTDSSTSR
                     TLLPWLLSERGFRPRLIEMGPNLESMLERCDGALLIGDRAIHHAHLQPDLVRMDLGDE
                     WLDITDMPMVFGVFCARQDADTTAVSCAISDLEGALSRFENEPLFRQEVIARSAKVTR
                     FSVGRMETYFGSEVRNRLTPKDRASMQRFATDVCGLEGEVPWWVDNQSEPVNRRNAAS
                     "
     gene            complement(1783..4347)
                     /locus_tag="HA345_00665"
     CDS             complement(1783..4347)
                     /locus_tag="HA345_00665"
                     /inference="COORDINATES: protein motif:HMM:NF024890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HIH83898.1"
                     /translation="MQARVLSGCLVLLLLLPVVVADIPEPVHVLDDSLHMDRLDGRLA
                     TDIIDVAHSPDGSMFASADMVYVNVWRTDGELLFSTAMGEFSGHEIIDITWTTDSSKL
                     IVAQVQPMSGLPSVTALKVADHTDKRIHTEEPVDGIQVQAVNSTQVIFSTADDNLVVY
                     NINESGLQLEASVDLGGEVGCTAVDNTTSRVIVGLTDDSDHFVTLLNLDDLSILHSWP
                     VDAPISDCAFSHNGAEVIWSLNDAIVQRQATDPYSFLSIIQTESSVIQFEEIFLDDEI
                     IALTGTIGEQQWLESWNTINQQLNWRMQLGMQTHVFSLSPDSSEIAFATNTGIIPIHR
                     SIPHETGVIADGVDTDGDGIPDSLDSDDDGDMIPDSFDNTCAESSDCSVNADLDNIRR
                     IELDLSPNGTLTVKETITLPLEFSRDIRTISAVALTDDATTSFSEAGMMARQLCGPAD
                     LDSIAQEWIDIVRINGSVPWGAETSCEINEGLSGTSTLQNGVGWLSHVRMTWTTTLKI
                     DPTRMVEPYDVRILQGLESREGSILQSIDSRPAIVHVMVEGELRNSSTVWTMSDLLDL
                     KVTPPDEPEPTLVGSFLDTFLQPLVIIPLIIAAGAVIFLILKRRMNYEYELEEICEVC
                     GSMNPPRSLLCSECGALFVYDQVMDKLESWMINNEMSVRDLFNRFDEDGNGTLESDEL
                     VAGLRSLKIAALPVAQLEALVESLDEDGNGVIDFEEFEMAIGSVQTMQDDEDFDEELE
                     IWNEEEVTEKAAPRRPPDQRQKTNEEPIQKKAPRAPPNQRKDVNEYSEPEPSEPTRRR
                     RVSRSSKRKVTKRVARDATMDEILEASGVDLDNSEFENTDDDEDYDAALRRLTGSD"
     gene            complement(4386..4862)
                     /locus_tag="HA345_00670"
     CDS             complement(4386..4862)
                     /locus_tag="HA345_00670"
                     /inference="COORDINATES: protein motif:HMM:NF025030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HIH83899.1"
                     /translation="MDERPERSEFDSVDPAPPSDENDIFSLKSTLCDESARMFLRMRA
                     LFSLRNIGGKDAVDALAAAFESDSALLKHEIAYVMGQMQDSAAVPHLIDRLADGDEDV
                     MVRHEAAEALGAIGDRTALATLEEFVDDDAVVVAESCEVALDLLEYVSSKRLNYAD"
     gene            complement(4865..5731)
                     /locus_tag="HA345_00675"
     CDS             complement(4865..5731)
                     /locus_tag="HA345_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HIH83900.1"
                     /translation="MTPGEPHTIRIGHSPDPDDAFMFHAMTTGRFDTTPYLYKHELLD
                     IETLNQKALNSEFEVSAVSIHALPDVLNDYALMNCGASMGEGYGPRIVTLGEKTIDQI
                     LDGKIAIPGIKTSAHLALRIMVGDLDTVVVPFDEIMDEVKAGNVDAGLIIHEGQLTWK
                     DEGLHLVADLGEMWAERTGGLPLPLGGNVVRRDLGKDACDVITEHVRLSIAHAIADPE
                     EGLAFAIEWGRGIDEETNEEFVQMYVNERTIDYGPEGREAVRRFLKEGQQIGMIRADL
                     DVDELEFIGAEE"
     gene            5829..6023
                     /locus_tag="HA345_00680"
     CDS             5829..6023
                     /locus_tag="HA345_00680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83901.1"
                     /translation="MVDAEKLSIARGQLGPKCASCESPLIFAEALVIDSEYHCFSCYE
                     KVTGASSASEPKEVSGLRMD"
     gene            6296..7255
                     /locus_tag="HA345_00685"
     CDS             6296..7255
                     /locus_tag="HA345_00685"
                     /inference="COORDINATES: protein motif:HMM:NF014011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83902.1"
                     /translation="MADKGWRGADLIFDLDGDHLPGVDALNFPAMLTTIQEQAYRLWN
                     DFLEPDFVYKEEHATFSFSGHRGFHIHYRHPSILHLDSKARQEIVSHISGANLNIEMA
                     LAGPRVGWGRRVARGVDSVLDRLQIYHESSDAERSRIYRKLRSTAVLGSANMSRRPTM
                     SEKAMEMLAAMSVDADRRRRLKNSLNNMGKQFGKNGELFTSLILGDQSVVLDQAAEND
                     DNVTVDIRRVIRWVGSLHGKAGLRVTEFPLSRLDPDGSDAFDSLTEAVPFSMQTMEKV
                     RILHDDVTARIADEVVEGNRGDEIEVTEAMSIFLGLKRWCEPL"
     gene            7333..8487
                     /locus_tag="HA345_00690"
     CDS             7333..8487
                     /locus_tag="HA345_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83903.1"
                     /translation="MTSDEENPPLPPGAMPPPPPPGGMMPPPPPAGMPPPPPEMPPPP
                     LPTEAPMPPAAAPPAPPAEMPPPPPALAPAPPADLPPPAPLPAPAATPESSAAPEPQS
                     TLSSNDRIDLRSLREGSDETVQNHDQMYGHIDRIASGQVGTLLDRFSNRFGSDLDREI
                     IVLRKKEQQAMREVNPTVELISGGQSEAVDVEDQMDDAEDLKAAIEDAIRPLKKRFDR
                     AKKERDTSLIRKIQPRLKALVEDRKMVIEVIDGERDFVDITPLMDEYLGEIPPEDEDE
                     EEHIMEEAPEDSASGDEDDSGDEDFRAFTDLANELLGLMPEDFQKEFISGPDIEFFSS
                     VFNDPAAASKDDRSAFVEMINRELGSAPDAVTDRLLQDIELAKRIKIRYG"
     gene            8493..>9225
                     /locus_tag="HA345_00695"
     CDS             8493..>9225
                     /locus_tag="HA345_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83904.1"
                     /translation="MGLLDRLDDDASDADEAASIETAPAKDIKKSEAKKTSRRGRRAK
                     AKEEIPVDDIEEDEEAPRRRGRGRRERKPREKKERVVRKIGEDREVAGMAAFSFRRIV
                     DFIVNYGWAIPILGLSLLGTNSDFTWFIIGGLALMLLNNIFLPYQFGRTLGNFTTRTM
                     FVRHTGKPPMFMFFLMKTFYFPFLLLGLFGVQLALEYSKDSNIIVLIICIISLLIFLA
                     DTIISRVRKEDRMGLWETAFLGVWLT"
BASE COUNT         2188 a         2201 c         2297 g         2539 t
ORIGIN      
        1 gtatatttca attcaaattt gcatgtcaat ccaactaaca tctgcgtcct tgcttgccgt
       61 ttctgtgcat ttcgtagagg tcggaaggcg gatgatgcat acgcgttatc tgtcgaagat
      121 tatctctcac gtatccggcc cttttcaagc cgtattgacg aagtacattc cgtcggagga
      181 ctacatcctg attggactgt tgagcattat gcggaactaa tccattctgc gaagaaagcg
      241 catccgcatc tttctatgaa gtgtttgact gcagtcgaag tcaagcatct ttcttcaatg
      301 agcaagatga ccttcgttga ggttctttca acattgaagg aggcgggttt gacatcatta
      361 cctggcggtg gtgcagaaat tctagatgat gagattcgta acatcatttg taatggcaaa
      421 gaatctagtg acgagtatct tgatattcat cgaacagcac atcatctcgg tttacctacg
      481 aattgtacta tgttattcgg gactgtagag caggccgagc atcggattcg gcatttggac
      541 cgactacgaa aacttcagga cgatactgga gggttccagt gctttgtgcc ttacccgttc
      601 cttcctgatc ggtcccgatt gcctcaggcg caacactcta ctggttcaga gacgattcgg
      661 atgattgcaa tttcaagaat catgcttgac aatatccctc acatcaaggc gtacaggatg
      721 aacattggag acaaacttgc agcaatagct ctgaactctg gtgcagatga tgtggatggt
      781 actgtcggcc atgaggagat tatgcatgaa gctgggagca tgacctctgt tgaggatgat
      841 cttgatcgtc tttcacgact catcgaggat gcgggaggga ttccaattcg tcgttctaca
      901 atctacaatc gatttcaacg atatattcga aggccaccat ccgacgatga ccgttgggtt
      961 gcattgccga ttgctgaagg ggtgtgaaag gatgcgtaca gatgttattg gccgtgtatc
     1021 gtttgcgaat tgtgatcctt tgttccatgg tcttgaccct aaatggaagg ttctgcccgc
     1081 ccctccttcg tggttaactg ggcatctcct gcgtggtgaa tgtctaattg caccgattcc
     1141 aatggctgac ttagcgagaa atgccgacac tctgtgtgct attgattcaa ttgggatcgc
     1201 ttcggatggg ggagttgggt ctgtgctcct gtttggtgat tgtcctgttg aggaaatgag
     1261 ggatatcgca gtgcctacgg attcctccac ttcgaggaca ttgctaccat ggcttctatc
     1321 tgagcgcgga ttccgacctc gactcataga gatggggccg aatctagaat ccatgcttga
     1381 acgatgtgat ggggcgctat tgatcggtga tcgtgcaatc catcacgcgc atctccagcc
     1441 agacctcgtc cgaatggatc ttggagatga atggttagac atcactgata tgcccatggt
     1501 attcggtgta ttctgtgcac gccaagatgc ggacactaca gcggtgagtt gtgctatttc
     1561 tgatcttgag ggcgccctat ctagattcga gaatgagcca ttgtttagac aggaggtaat
     1621 cgcaagatca gcaaaggtta ctcgatttag tgtgggcaga atggagacct atttcggatc
     1681 cgaggtaagg aatcgattga cgcccaaaga tcgtgctagc atgcaacgat ttgcgacaga
     1741 tgtctgtggc cttgagggtg aagtgccctg gtgggttgat aatcagtcag aaccagttaa
     1801 tcgccgtaat gcagcatcgt aatcttcgtc atcatctgtg ttctcgaatt cggagttatc
     1861 cagatcaaca ccactcgctt cgagaatctc gtccattgtt gcatctctag cgactcgttt
     1921 tgtcaccttt cgcttggatg accgacttac tcgtcggcgt cgagtaggtt ctgaaggctc
     1981 aggttcagag tattcgttca catcttttct ctgattaggt ggtgcacgag gagctttctt
     2041 ctgaataggt tcctcgtttg ttttctgtcg ttgatcaggt ggtcgacgag gtgcagcctt
     2101 ctcggtcact tcctcttcgt tccagatttc tagttcttca tcgaaatcct cgtcgtcttg
     2161 cattgtttgt acgctaccaa ttgccatttc aaactcttcg aaatcaatga caccatttcc
     2221 atcctcgtcc aaactttcca cgagtgcctc cagttgtgcc acaggtaacg cagcaatctt
     2281 gagagagcga agtccagcga ctagttcatc tgattctagt gtcccgtttc cgtcttcgtc
     2341 aaagcgatta aacaggtccc tgacactcat ttcattattt atcatccatg actcaagttt
     2401 atccattact tgatcataga cgaagagagc accacattca gagcagagca aagaacgagg
     2461 agggttcatc gatccacata cctcacaaat ctcctcaagt tcatactcgt agttcatgcg
     2521 tcgcttcaaa attagaaata taactgcacc agcggcgatt atgaggggga taattaccaa
     2581 tggttgtagg aatgtgtcga gaaaacttcc tacaagtgtg ggttcaggtt catcgggagg
     2641 ggttaccttc agatctaata aatcgctcat ggtccaaacg gtggaactgt tcctcagttc
     2701 cccctctacc atgacgtgga cgattgctgg tctactatcg atgctctgca gaatactacc
     2761 ttctcttgat tcgagacctt ggagtatccg tacatcatag ggttctacca tgcgtgtcgg
     2821 gtcaatcttc aacgttgtag tccaagtcat cctcacatga ctcaaccaac cgactccgtt
     2881 ctgaagggtt gaagttccac tcaatccttc attgatttca caactcgtct ctgctcccca
     2941 agggacgcta ccattaatcc tcacaatgtc aatccactct tgtgcgattg aatctaaatc
     3001 cgctggacca cacaattggc gtgccatcat ccctgcttct gagaaggaag tcgttgcgtc
     3061 gtcagtaagg gcgactgcag agatggtgcg aatgtctctt gaaaattcca acggcaaggt
     3121 aatcgtctct ttgacagtta gtgtgccatt cggagaaagg tcaagttcaa tccgccgtat
     3181 gttgtctaag tcggcattga cactacaatc tgaactctca gcacaggtgt tgtcgaatga
     3241 gtcgggtatc atgtcgccgt catcatcact gtccaatgag tcagggatac catctccgtc
     3301 tgtgtcgact ccatcagcga taactcctgt ttcgtgaggt atggaacggt gtatcgggat
     3361 aatccctgta ttggttgcga aggcaatttc ggaggaatct ggagatagtg aaaatacatg
     3421 cgtctgcatg ccgagttgca ttctccaatt gagttgttga ttgattgtgt tccaggattc
     3481 caaccattgt tgttcaccaa tcgtcccggt caaggcgata atctcgtcat cgagaaagat
     3541 ttcctcaaat tgaatgacag atgattccgt ttgaatgatt gataggaatg agtaggggtc
     3601 agtagcctgt cgttgaacga ttgcatcatt gagtgaccat attacttcag caccattgtg
     3661 gctgaatgcg cagtccgata tgggggcatc cactggccat gaatgaagga tagataggtc
     3721 atctagattg aggagagtta cgaagtggtc actgtcatcc gttaatccaa caatcacgcg
     3781 cgaggtcgtg ttatctactg cagtgcaccc tacttctcct cctagatcca cggatgcctc
     3841 taactggagc ccactttcgt tgatattgta tactactagg ttatcatctg ctgttgagaa
     3901 gattacctgc gttgaattaa ccgcttggac ttggattcca tctacaggtt cttctgtatg
     3961 gattcgcttg tctgtgtggt ccgcaacttt cagagctgtc actgacggaa gccctgacat
     4021 cggttgaacc tgggctacaa tcaacttgga tgaatcagtt gtccaagtga tatcgataat
     4081 ctcatgccca ctaaattcac ccatcgcggt ggagaagagg agttctccat ccgttctcca
     4141 gacattcacg tagaccatgt ctgcggaggc gaacattgag ccatcgggcg agtgtgcaac
     4201 atcgatgata tcggtggcta gcctaccatc gagtcgatcc atgtgtaggc tatcatcgag
     4261 cacatggaca ggctcaggaa tatcagctac gacgaccggc aggagcaaaa gcaggaccag
     4321 acatccgctg agaacgcgag cctgcatgcg aatagcaagg atacgcctgt tatatccgta
     4381 tggtctcaat cagcataatt gagacgtttt gatgagacat actctagtaa atcgagggca
     4441 acttcgcagg attctgctac tacaactgca tcgtcatcca caaattcttc tagggttgcg
     4501 agagcagttc tatcgccaat tgcacctaag gcttcagctg cttcatggcg taccatgaca
     4561 tcctcatctc catcggccaa tcgatcgatt agatgtggga ctgctgccga atcctgcatc
     4621 tgccccatga catatgcaat ttcgtgcttg agtagcgcag aatcagattc gaatgcggcg
     4681 gctaacgcat ctacagcatc tttcccgccg atgtttcgaa gcgagaatag ggcgcgcatt
     4741 cgtagaaaca ttctagcaga ttcatcgcag agagtggatt ttagtgaaaa tatgtcattt
     4801 tcatcactgg gaggtgccgg gtcgacagaa tcgaactctg aacgttctgg ccgttcgtcc
     4861 acgcctattc ctccgctccg atgaactcaa gctcatccac gtcaagatca gcccgaatca
     4921 ttccaatttg ttggccttcc ttgagaaaac gtcgcactgc ttctcgacct tcaggaccat
     4981 agtcgattgt tcgttcgtta acatacatct gaacaaactc ttcgtttgtc tcttcatcaa
     5041 ttcctcgccc ccattcgatt gcgaatgcaa ggccttcttc agggtctgca atggcatgtg
     5101 ctattgaaag tcggacatgt tccgtgatga cgtcgcatgc atcttttcca agatcgcgtc
     5161 gtacgacatt tccgccaaga gggagaggca gtcctccagt cctttcagcc cacatctcgc
     5221 caaggtcggc gacaagatgg aggccttcat ccttccaagt taattgcccc tcatggatga
     5281 ttagtccggc atcaacattg cctgccttga cctcatccat gatttcgtcg aatgggacga
     5341 caacagtatc caaatcacct accatgattc taagcgcgag atgggctgag gtctttatcc
     5401 caggtattgc gattttccca tcaagtatct gatcgatggt tttctcccct agtgtgacga
     5461 ttctagggcc atatccctca cccatcgagg cgccgcagtt catcagagca taatcgttca
     5521 gtacgtcggg taatgcatgg attgaaacag cggatacttc gaattcgctg ttcaatgcct
     5581 tttgatttag tgtctcaatg tcgagcagtt catgtttgta cagatatgga gtggtatcga
     5641 aacgaccggt agtcatggca tgaaacatga atgcgtcgtc tggatctgga gagtggccga
     5701 tgcgaatagt atggggttcc cctggcgtca tgtaagagga ccggaaggtt cggtgtaaaa
     5761 acgaatgtgt gacacttggg gttcctttgg ccgctgtctt gaaatgcctc actcgattgt
     5821 ggcacatcat ggtcgacgca gagaaactca gcatcgctcg aggtcaactt gggccaaagt
     5881 gtgcttcgtg tgagtcgcct ctaatcttcg ctgaggcttt ggtcattgat tccgagtacc
     5941 attgcttctc ttgttacgag aaggtcactg gagcatctag cgcctctgag ccgaaggaag
     6001 tatccggtct ccggatggat tgatttagcg tcgttccctg tctgctgatg tgagtacggc
     6061 caggcatcag ttccgtttct cggagttcta tcgaagcctt gccccctctg atctctatct
     6121 ccctccccgt cttcgaagcc gggaatggat gttcatgggt tgggatgaac ggcctcctcg
     6181 tcgtcatttg gggtattcta gttcggaaga tttgcatcaa gtattgacgc gttcaagtcc
     6241 ccctcactca tgctttcaca gtacggcata ctatgaccgt ccttctgagt ggaagatggc
     6301 tgacaagggc tggcgaggcg cggatttaat tttcgatttg gatggagacc atcttcctgg
     6361 ggtcgatgcc ctaaattttc ctgcgatgct aactactatt caggagcagg catatcgtct
     6421 ttggaatgac ttcttagagc cagatttcgt atacaaggaa gagcatgcaa ctttcagttt
     6481 ctcggggcac cgtggcttcc acatccacta ccgtcaccct agcatactgc atctggattc
     6541 gaaggctcga caggaaattg tttcacatat ctcgggtgct aatctgaata ttgagatggc
     6601 cctcgcaggg ccacgagtag gctgggggag gcgtgttgcc cgtggcgttg attccgtcct
     6661 tgataggttg cagatttacc atgagtcctc tgacgcagaa cgtagtcgaa tttatcgaaa
     6721 actccgctct actgccgtct taggttcagc gaatatgtca aggaggccta caatgagtga
     6781 gaaagctatg gaaatgttgg cggcaatgtc tgtcgatgct gatcgtcgga gacgattgaa
     6841 gaattctctc aataatatgg gtaagcagtt tgggaagaat ggtgaattgt tcacttcctt
     6901 aattctcggt gatcagagtg tggttctcga tcaggctgca gagaatgatg acaatgtaac
     6961 tgtcgatata cgacgtgtaa tccgttgggt tgggagcctt catggtaagg ctggacttcg
     7021 agtgactgag ttccctctat cgcgtcttga ccctgatggt tcagatgcgt ttgattcgct
     7081 cactgaggca gtgccgtttt cgatgcagac aatggagaaa gtccgcattc tacatgatga
     7141 tgttactgcg agaatcgccg atgaagtcgt cgaaggaaat cgaggtgatg aaatcgaggt
     7201 gacagaagca atgagtatat tcctcggttt gaaacggtgg tgcgaacctc tctgaggttt
     7261 catcgattcg gtatcctcca tcggggaatg ttaaaaccgt aatcgtgctg aatccaatac
     7321 agggtggccg ggatgacatc ggatgaagag aatccacctt tgccaccagg ggctatgcct
     7381 ccacctcctc ctccgggtgg tatgatgcct cctccacccc ctgcaggcat gcctcctcct
     7441 cctcctgaaa tgccgcctcc acctctacct acagaggccc ccatgcctcc tgctgctgct
     7501 cctcctgcgc cccctgctga gatgccacca ccacctccag cactagctcc cgccccccct
     7561 gccgatctcc ctcctcctgc tcccctccct gctcctgcag cgactccaga atcttcagcc
     7621 gcgccagaac ctcagtccac attgtcatcc aatgacagaa tcgatctccg tagtcttcgt
     7681 gagggctctg atgagacggt acagaatcac gaccagatgt atgggcatat cgatcgcatc
     7741 gcttcgggcc aagtcggtac tttgctcgat cgcttctcaa atcgtttcgg ttctgatctc
     7801 gaccgtgaga tcattgtgtt gcgcaagaag gagcagcagg caatgcgcga ggttaatcct
     7861 acggttgaac taatcagtgg tggtcaatca gaagcagtag atgttgagga tcagatggat
     7921 gatgcagaag acctcaaggc tgcgattgag gacgcaatcc gcccacttaa gaagcgcttt
     7981 gatagggcta agaaggaacg ggacacatcc ttaattcgta agattcaacc acgtctgaag
     8041 gcacttgttg aggaccgtaa gatggtcatt gaagtcattg atggcgagcg agatttcgtt
     8101 gatatcactc ctctcatgga tgaatatctc ggtgaaatac ctcctgagga tgaagatgaa
     8161 gaagagcata tcatggagga ggctccagaa gattctgctt ccggagacga ggatgatagt
     8221 ggtgatgagg acttccgtgc cttcactgat ttggccaatg aactcctagg tctaatgcca
     8281 gaggacttcc agaaggaatt tatttccgga ccagatatcg aattcttctc ttcagtgttc
     8341 aatgatcctg cagccgctag taaggacgat cgtagtgcct ttgtagagat gataaatcgc
     8401 gaacttggat cagctcctga cgcggttacg gaccgtcttc tccaagacat tgaattggcg
     8461 aagcggatta agataagata cgggtgaatg atatgggact cttagaccga ttggatgatg
     8521 atgcgagcga tgccgatgag gctgcttcga ttgagactgc ccctgctaag gatatcaaga
     8581 agtccgaggc caagaagacg agccgtcgag gccgacgtgc taaggcgaag gaagagattc
     8641 ctgtagatga tattgaagaa gatgaggagg cgccacgccg tcgaggacga ggtcgtcgag
     8701 agcgtaaacc tcgagagaag aaggaacgag tcgttcgaaa gattggcgaa gatcgagaag
     8761 ttgctggaat ggctgcgttc tcctttcgcc ggattgttga cttcattgtc aactacggct
     8821 gggccattcc aatcttagga ctcagtctcc ttggaactaa ttccgatttt acatggttca
     8881 tcatcggtgg tttggctcta atgttgttga acaatatttt cctgccttat cagttcggta
     8941 ggacgttggg gaatttcaca acacgtacga tgtttgtccg gcacacgggg aagcctccaa
     9001 tgttcatgtt cttcttgatg aagacattct acttcccgtt cttgcttctc ggtttgttcg
     9061 gggttcagct tgctttagaa tatagtaagg attcgaacat tattgtcttg ataatctgca
     9121 taatctcgct gcttatcttc cttgcagata cgatcatttc tcgggttcgt aaggaggacc
     9181 gaatgggtct ctgggaaacc gcattccttg gtgtctggtt aacta
//
LOCUS       DUKB01000017            5564 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_427578, whole genome shotgun sequence.
ACCESSION   DUKB01000017 DUKB01000000
VERSION     DUKB01000017.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5564)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5564)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5564
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_427578"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..858
                     /locus_tag="HA345_00700"
     CDS             <1..858
                     /locus_tag="HA345_00700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH83905.1"
                     /translation="HCHDADTLWVGLRTKKEIGATVVFDMHDLAHTWARMTNPTSIIR
                     RIVASGIERRLVRRLKYCDLVVTSSGSVSKTSKPGFREWIRKRSNVDVVVVENRPLSV
                     KEHTHLPERFTIGYIGSIREPGMFKTLIDAISLWPENERPRVLIAGHGTAEKEVDKML
                     MDSKIDYDRSGAFSRNEIHELISKISVMYAVYPVLRGNILEGALPTKMFDAAAYGRPS
                     VVNSGCLMGDIAQAEELGQTVQVGEPLALKNALDNIKKNSTTVILNRDWSGEAERLIS
                     AYERFGNGS"
     gene            882..2210
                     /locus_tag="HA345_00705"
     CDS             882..2210
                     /locus_tag="HA345_00705"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HIH83906.1"
                     /translation="MLTTDRIKALDLTIGVVGLGYVGLPTALGFHDAGFRVHGLDVSE
                     RVISELQAGRNPGDDPAFDNAIPNDERWTVTTEPKIVIPECDVILVTVPTPVLENKRP
                     DLRFIQAAGETIFDHIDRGKRPVVVLESTVYPGVTREIWSPLIESRGLSEGVDLDLAY
                     CPERFVPGDPNHGVRQVPRVVGATDTDIVKALAELYSHLTEGTVTPVSSIEVAEAAKV
                     VENVQRDLNIALVNELALIFPEIGLDVEEVLTAAATKWNFHRYTPGIGVGGHCIPVDP
                     YYLIQKAHSAGAPVELITSAREVNATMPKQVATRIIRQTSDLGRSPSSLKILLLGWSY
                     KPGIADARETPSESLANELVEQGCEIYVWDPHIQAEHRLDGPYIWVDQPETSKPDVVI
                     LCTAHEEILGLDWTALRKSSDLGFLYDGRRVLDVEILHDAGWITGAVGRP"
     gene            complement(2211..2834)
                     /locus_tag="HA345_00710"
     CDS             complement(2211..2834)
                     /locus_tag="HA345_00710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83907.1"
                     /translation="MAAAIHLILFADYFDLRGIALGMPIDNTYLWHGYRYREFSETSW
                     WRTWAPLMESIGLDLLLPIAGISEASAVHIVQQAGLGNIVSSCLRAKHPGCGRCWKCF
                     HKNGMLGHPYDIEAREIQAFLGKRPVRTATHALWWVGEQNHWDQVPDLHHLKERDFSW
                     WVKHHPPAFDLLPDWIRPSIQSAIEDATEPIPEDSEFYTWNLFPDTE"
     gene            3427..>5564
                     /locus_tag="HA345_00715"
     CDS             3427..>5564
                     /locus_tag="HA345_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83908.1"
                     /translation="MKIHPADSSRLQYLILTITRKDTLIVDATGIASKTLRTIRNVHQ
                     IDNNGEFRDIHATHNLDVLYIIEPEDYPALAHDLTTPVMILLIREDDEEINTHQTFKI
                     DSIRDPPSNLIFDHLIWLPVMNDASGRRPYMHRFLYALGQRKALIRRIKSRAKKRELT
                     IAEMELLARSLSNPGNWEEASDMHYRVWTSAPDYRDAAWQAIRTSIYTKRWTQLRILL
                     TLNPVFIQSQDMLDRLRKKMNQLPIQERIQAIEELFSKEVNIKEFMEEWISSPPTCIK
                     DWTSPIASIASEDTPGEHIGTIHHYLIECGLSNSADELQQKHLENFTNLDFIVSYASR
                     IETHDHTTQLISEIVNEADDSSLKDIIRVIRRVEKLETLVDPNLMKRFVSSTDTLETW
                     MIEWALNNNDKDGLRDLLSKCLKGTVSSLVESLNIARVEENEDYMITLLEAISSTPEA
                     IFDQRLRSTMCKDMVTYSDPSTALRFCLESIAINPQDAEAGRWAMEAAVGTGQSMTIL
                     GTADIVLSMRNRSQHIPYHTIAIAAAREGKIQYAKDLLKINRLNSNIEAQRLRIGIRY
                     HLDKNMEDTLEEVSNTQEKFRQDHTILIYDGLANAELGNQKLALSAADAIRDPSEKEA
                     LRHLVLQRIGKTKMANTTLKELILDGDEVKEIDQWIKDGCTFSSLAPVMKPRKKAPKR
                     DNSPLVSVIMTTHRWNDAFEIAVNSILNQA"
BASE COUNT         1641 a         1321 c         1293 g         1309 t
ORIGIN      
        1 cactgccatg atgccgatac cctatgggtc ggcctccgta ctaagaagga aatcggtgcg
       61 actgttgtat tcgacatgca tgatcttgct cacacttggg caagaatgac gaatccaaca
      121 tctatcatcc gaagaattgt cgcatcaggg attgaacgac gactggtccg gcgactgaaa
      181 tattgtgacc ttgttgtcac cagctccgga tcagtctcaa aaacatcaaa accgggattc
      241 agagagtgga ttagaaagag aagtaatgtc gatgttgtgg ttgtagaaaa tcggccactg
      301 tccgtcaaag aacatactca cctacctgaa aggttcacca tcggctacat tggaagtatc
      361 cgtgaaccag ggatgttcaa gacactgatt gatgcaatat ctctttggcc agaaaatgaa
      421 cgacctcgag ttcttatcgc aggccatgga actgctgaaa aagaagttga caagatgtta
      481 atggattcaa aaattgatta tgaccggtca ggagcattta gtcgaaatga gatacacgaa
      541 ttaatcagta aaatcagcgt tatgtacgca gtatatccag tactccgcgg caatatcctt
      601 gagggcgcat tacccaccaa aatgtttgat gctgctgcgt atggccgacc atccgttgta
      661 aactcaggat gtctaatggg ggatattgcc caagcagaag aactaggaca gaccgtgcaa
      721 gtgggagaac ctctagcact caagaacgca ttagataata tcaagaaaaa ctcaaccacc
      781 gtcattttga atcgtgattg gagcggggag gcagagaggt taatctctgc atacgagcgg
      841 ttcgggaacg gttcttgaac cgagtaggag gagaagtaat tatgctcacg actgaccgaa
      901 tcaaggcact tgatcttaca ataggagtag taggactagg ctatgtcggc ctcccaaccg
      961 ctttgggatt ccatgacgca ggattcagag ttcatggatt agatgtatca gaacgcgtaa
     1021 tctctgaatt gcaggccgga cgtaaccctg gagatgaccc tgctttcgat aatgcgatcc
     1081 caaacgatga gcgttggacc gtgacgactg aaccgaaaat tgtcattcct gaatgcgacg
     1141 ttatcctcgt aaccgtccca actccggtcc tagaaaataa acgtccagac ctccgtttca
     1201 tccaagccgc tggcgagact atcttcgacc acattgatcg agggaaacgt cctgtcgttg
     1261 ttctggaatc aaccgtctac ccaggtgtta ctcgcgagat ttggagccca ctgatagaat
     1321 ctagggggct aagtgaagga gttgatctag atctcgctta ctgtcctgag agattcgttc
     1381 caggtgaccc aaatcatgga gtccggcagg tcccgagggt tgtaggtgca acagatacag
     1441 atatcgtcaa agcattggca gagttgtata gccaccttac ggaaggaact gtgactccgg
     1501 tctcatctat tgaggtcgca gaagcagcaa aggtcgttga aaatgtccag agagatctga
     1561 acattgctct agtgaatgaa ctagccctaa tctttccaga aatagggcta gacgtcgaag
     1621 aagttctgac tgctgccgct acgaaatgga actttcaccg ttatacacct ggaatcggag
     1681 tcggcgggca ctgcattcca gtagacccat actacttgat tcagaaagcc cattctgcgg
     1741 gcgcgccagt ggaactaatc acctcagcac gcgaggtaaa tgcgactatg ccgaagcagg
     1801 tggctacgag gattattaga caaacttcgg acttaggacg gtctccttcc agtctgaaaa
     1861 ttctgctcct tggttggtcc tacaagccag gaatagccga tgcccgtgaa acaccttctg
     1921 aatcacttgc caatgaactt gtagaacagg gttgtgaaat ctatgtatgg gacccacaca
     1981 tccaagcaga acatcgactt gatggcccat acatatgggt cgaccaacct gaaacatcga
     2041 aacccgatgt tgtcattcta tgcactgccc atgaagagat ccttggacta gattggaccg
     2101 cactaaggaa aagttcggat ctcggattcc tctatgacgg gcgccgagtc cttgatgtag
     2161 agattctcca tgatgcagga tggattaccg gggcagtggg ccgcccctag tcactctgta
     2221 tccggaaaaa ggttccaagt atagaattca gagtcttcag gaatgggctc tgtcgcatct
     2281 tcaattgctg actgtatact cggacgaatc caatcgggaa gtaaatcgaa agccggcgga
     2341 tgatgtttta cccaccatga gaaatccctc tccttaaggt gatgtaggtc tggtacctga
     2401 tcccaatgat tctgctcacc aacccaccag agagcgtgcg tagcagttcg aaccggtcgc
     2461 ttgccgagga aggcttgaat ttccctagcc tcgatgtcat acgggtggcc aagcattcca
     2521 ttcttgtgaa agcatttcca gcacctccca caccctggat gcttcgctcg gagacaagaa
     2581 cttacgatgt ttccaagacc tgcttgttgg acaatgtgga cagcggaagc ctccgagata
     2641 ccagcaatag gaaggagaag gtcgagccca atgctctcca ttagtggagc ccaagtgcgc
     2701 caccaactgg tttccgagaa ttcacgataa cgataaccat gccagaggta ggtgttgtct
     2761 atgggcatac caagcgcaat acctctgaga tcaaagtaat ctgcaaagag aatcagatga
     2821 atggccgccg ccatgtccgt cgagaacccc gtaggtttct cccaaaatgt tcggatcttc
     2881 tcatggtccg acgttatgct gtggactcta cgcccccgtt tccttcgaag atatttgaat
     2941 aaacgatcag caccatgatg cttcaataga gatttgaagc tcctccgatg atataccaac
     3001 accgtttccg cgggcattat ttccatgcaa gccgtcgaat cgatgccacc tgaaagggac
     3061 aaacccggga aatttccatg cttccgagtt ggcacccatc catccaaaat tcccttcacc
     3121 cagggggaaa gaagaacctc agttgccaca tacaaaagat caggatgtag gtgttcacgc
     3181 ctgaaatctc gaggtagttg ccaaaacact gacccgaacg gcccattgaa tactagtttc
     3241 tttcgcgtaa aagtccagaa ccaattttgt gttggaccct ccaacacgac atccatggcc
     3301 agttcactaa caacgagtcc caaaacatct tcggggtttt ggaatgcctc cagagagttt
     3361 tctaccacca cttgtataag tatctgaact caccgagaac gaagagacag cgagggatat
     3421 gaggtggtga aaattcatcc cgccgattct tcgagattac agtacttaat cctgacaatt
     3481 actcgtaaag atactctgat tgtggatgca accggaattg catccaagac actgcgcacc
     3541 ataaggaacg tacatcaaat cgacaataat ggtgaattca gagacataca tgcgactcac
     3601 aacttagatg tgctctacat aattgagccg gaggattatc ctgcattagc acatgatctg
     3661 actacacctg tgatgattct cctgattcgc gaggacgacg aagagattaa tactcatcaa
     3721 acgttcaaaa ttgatagcat cagagacccg ccatctaatc tcatcttcga ccatctaatt
     3781 tggctcccag tgatgaatga tgcatctgga cgacgcccat acatgcaccg gttcctttac
     3841 gctcttggac aaagaaaggc actcattcgt cggattaaat cccgggccaa aaaacgtgag
     3901 ttaactatcg cagagatgga actccttgca aggtcccttt caaaccccgg aaattgggag
     3961 gaggcgtcgg atatgcacta tcgagtatgg acatctgcac ccgattacag agacgctgca
     4021 tggcaagcta ttcgtacctc gatatacacc aaacgatgga ctcaactacg aatactattg
     4081 acattgaatc ccgtgttcat ccaatctcaa gatatgctcg atcgtttaag gaaaaaaatg
     4141 aatcaactcc ctattcaaga acgcatccaa gctatagaag agctgtttag caaggaggtg
     4201 aatatcaagg aatttatgga agaatggatt agctcgccgc cgacatgcat caaagactgg
     4261 acctcgccga ttgcatcgat tgcgtctgag gatactcctg gtgagcatat cggtacaatc
     4321 caccattacc taatcgaatg tggcctaagt aattcagcgg atgaactaca acagaagcac
     4381 cttgaaaatt tcactaatct cgatttcatc gtgtcctatg catctcgaat tgaaacacat
     4441 gatcacacga ctcaactaat ctccgagata gtaaacgagg cagatgattc gtccctcaag
     4501 gatattatca gagttattcg acgagtggag aaactggaaa cactcgtcga tccaaattta
     4561 atgaagcgct tcgtgagttc tacagatact ctggaaacat ggatgattga atgggcattg
     4621 aataacaatg acaaggatgg attgagagac ctactctcta aatgtctcaa agggacggtt
     4681 agttcacttg tagaatcact gaatatagcg cgggtagagg aaaatgagga ttacatgatc
     4741 acacttctag aggcgatatc cagcactcca gaagcgatat tcgatcagag gttaagatcc
     4801 acaatgtgta aagatatggt gacatactcg gacccttcaa cagcgctccg attctgtctt
     4861 gaatccatcg ccatcaaccc tcaagacgct gaagccggca gatgggcgat ggaagccgcc
     4921 gtaggaacag gacaatcgat gacaattctt gggaccgcgg atatagtact ctcgatgagg
     4981 aatcggtctc aacatatccc ataccacacg attgcaatcg cagctgctag ggaaggtaaa
     5041 atccagtacg caaaggacct cttgaaaatc aaccgactta attccaatat cgaagcacaa
     5101 cgtctccgaa taggtatacg atatcatctt gacaagaata tggaagatac cctagaggag
     5161 gtatcgaata ctcaagagaa attcagacaa gatcatacta tcttgattta cgacggattg
     5221 gcgaatgcag aattaggaaa tcaaaaatta gcactctcgg cagccgacgc aatccgtgac
     5281 ccgagtgaga aggaggccct acgccacttg gtgctacaac gtattggaaa gacgaaaatg
     5341 gccaacacaa ctctcaagga acttattttg gatggtgacg aagtaaagga aatagaccaa
     5401 tggatcaaag atggttgcac gttttcttca ctcgctccag tcatgaagcc aaggaaaaag
     5461 gcgcccaaga gggataattc ccccttagtg agtgtaatca tgacaacaca tcgttggaac
     5521 gatgcctttg agatagctgt taattccatc ctcaatcagg ccca
//
LOCUS       DUKB01000018            5149 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_106441, whole genome shotgun sequence.
ACCESSION   DUKB01000018 DUKB01000000
VERSION     DUKB01000018.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5149)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5149)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5149
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_106441"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            9..311
                     /locus_tag="HA345_00720"
     CDS             9..311
                     /locus_tag="HA345_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014629376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HIH83909.1"
                     /translation="MRNALRMMIVLLAVIGLTDVVAAAGADAALNGSGYSWGMPLGAG
                     IALGLAGVGTGLSQGQIGAAAVGMVAEDGDKFVTGLIFTALPETIVLFGFLAMFLM"
     gene            364..930
                     /locus_tag="HA345_00725"
     CDS             364..930
                     /locus_tag="HA345_00725"
                     /inference="COORDINATES: protein motif:HMM:NF014093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83910.1"
                     /translation="MSLEKLAKDIAAQAEAEASEIIAEAKAEAKRISKGASSEVAAIS
                     SDTMAMAEKQAAQIGVESVASARQSNQKDILIAKRVQIDLTYDAVREKLGSPKLGKRS
                     AMLDSLLKDAKAEAKGKMTLRPAAIDRSALEQKASGFTLGDDVEALGGFMLVSDDGSI
                     SLDYTFDSKLNDAWLTSLGDVNRTLFGA"
     gene            945..1988
                     /locus_tag="HA345_00730"
     CDS             945..1988
                     /locus_tag="HA345_00730"
                     /inference="COORDINATES: protein motif:HMM:NF014094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase subunit"
                     /protein_id="HIH83911.1"
                     /translation="MFGRGNWANAAARARSRRGRLLDRTRIRQLIKQKPDAIAASIGD
                     AGYRQDIDLYAHRLAGAELVEAGLSHNLDREVHQVLKFCQGELSDIVGVWATKIDHNK
                     AKAVLRAVDRGIETDRLCNSALPKENPENAEWIAIVDSSSTLEEAAASVSKTGLGRRI
                     FRDMSPEATLADYEDALDRSYYQSALSVIPNRGPNASLRRYLKMEIAHRDVLNIMRAM
                     RQEISSEKRAAIFLPGSGLSRATETALIQANNLDDVLQAVRRTLSFDDSGLEEALQLY
                     SESKTMDPVVDLFHHKRSELLLRFSHLHPISAMPIVYYIERKLLEVENLRLLVRGKAA
                     GLPEPVIEAHLTL"
     gene            1998..2297
                     /locus_tag="HA345_00735"
     CDS             1998..2297
                     /locus_tag="HA345_00735"
                     /inference="COORDINATES: protein motif:HMM:NF002577.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HIH83912.1"
                     /translation="MEIAVIGSPEFTLGFQLAGVTHLHNPADEEELASLCRSMIADKD
                     VGIVVLDSGDLSRLPERIRDEVNLSVTPTFLGIGTEEDNTLRESIRKALGVDLWK"
     gene            2323..4065
                     /locus_tag="HA345_00740"
     CDS             2323..4065
                     /locus_tag="HA345_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011499311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HIH83913.1"
                     /translation="MSNNEGVIYRISGPVVTATGIDARMYEVVRVGHEKLMGEVIEIH
                     GEQSVIQVYEDTSGIRPGEPVLSTGQTLSVQLGPGLLTSIYDGIQRPLQTLEEVMGVF
                     ITRGVDADGLDLEKKWDFVATASAGDEVVGGQIIGTVQETETITHKIMIPPKSSGTIK
                     SIDSGEFTVTETVCTLDDGTEIQMMQEWPVRHPRPYTQKYAPDTPLVTGMRILDFLFP
                     LAKGGAAGIPGPFGSGKTVTQQSLAKYSDAQLVVYIGCGERGNEMTEVLDEFPGLIDP
                     NTGKPLMNRTVMIANTSNMPVAAREASVYTGITIAEYFRDQGYDVALMADSTSRWAEA
                     MREISSRLEEMPGEEGYPAYLSSRLAEFYERAGRVETLNGDDGSVTVIGAVSPPGGDI
                     SEPVSQGTLRIVKVFWGLDAGLARKRHFPAINWLNSYSLYPQSLNQWFRDNIASDFPE
                     VRTEISALLKVEAELQEIVQLVGSDALPIDQQLTLEVARMIREYFLQQNGFDPVDAYS
                     GVEQQYAMAKAILTFQGEAKKAMAAGARLQDVVNVPARTELMRARFAEGYLESIGGLV
                     DDMVGEITGTVEAN"
     gene            4080..>4622
                     /locus_tag="HA345_00745"
     CDS             4080..>4622
                     /locus_tag="HA345_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010878663.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the B subunit is part of the
                     catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HIH83914.1"
                     /translation="MTSKEYKTITDIKGPLVFLEKTEPVAYGEIVTIRLSDGSTKNGQ
                     VLDTSDDAVIVQVFEGTEAIDRQAGVKFLGDVFKLPVSRDLIGRILDGAGRPRDGGPD
                     IVAEEKADIIGAAINPYSRQSPHDFIQTGVSAIDCCTTLVRGQKLPIFSASGLPHNDI
                     ALQIARQAKLKDSDEEFIVVF"
     assembly_gap    4623..4929
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <4930..>5149
                     /locus_tag="HA345_00750"
     CDS             <4930..>5149
                     /locus_tag="HA345_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007696062.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the B subunit is part of the
                     catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HIH83915.1"
                     /translation="EEFIVVFCAMGITAEEYNFFRTDLERTGALENAVLFVNLADDPA
                     VERLITPRLALTAAEYLAFEHDYHVLVIY"
BASE COUNT         1184 a         1196 c         1312 g         1150 t
ORIGIN      
        1 cgaaaatgat gaggaacgca ctacgaatga tgattgtcct gttggccgtt attggcttga
       61 cagacgtggt cgcagcggcc ggagcagatg cagctctgaa cggcagcggc tactcttggg
      121 gtatgcccct gggcgctggg attgcactcg gtctagccgg tgttggcacc ggtcttagcc
      181 agggtcagat cggcgcagca gcagttggca tggtcgctga ggacggagac aagttcgtta
      241 caggtctgat cttcacggca ttgcctgaga cgattgtcct gttcggtttc ctcgcaatgt
      301 tcctaatgtg aacatctgcg tgaaccgttc tgaatacacg aatgaataca tgaggacagt
      361 gacatgagtc tagaaaaact cgccaaggat atcgcggcac aggccgaagc tgaggcatcg
      421 gagattatcg cggaagcgaa ggcagaagcg aagcggattt ccaaaggagc aagctccgag
      481 gtagccgcca ttagctcaga tacgatggct atggctgaga agcaagcagc acaaatcggc
      541 gtagaatccg ttgccagcgc ccgccagtct aaccagaagg acatcttgat tgcaaagcgt
      601 gtgcaaattg atctgaccta cgatgcagtg cgtgagaaac tcggaagtcc gaaactcggc
      661 aagcgttcag cgatgttgga ttccctattg aaggatgcaa aggcagaagc aaagggcaag
      721 atgactctcc gacctgctgc aatcgatcgc tccgctctcg aacagaaggc gagcggcttc
      781 actttgggtg acgacgtaga agccctcggt ggcttcatgt tggtgtctga cgatggcagt
      841 atcagcctgg actacacctt cgactcaaaa ttgaatgatg catggttgac ctcccttgga
      901 gatgtcaatc gaaccctctt tggagcttaa tcggtgggat gaaaatgttc ggtcgaggaa
      961 attgggctaa tgcggcggcg cgcgctcgct cccgtcgcgg acgtcttctc gatcgaaccc
     1021 gaattcgcca gttgattaag caaaaaccag atgctatcgc tgcaagtata ggagacgcag
     1081 gataccgtca agatatcgac ttgtatgctc accgtctcgc cggtgcagag ctcgttgaag
     1141 ccggattgag tcacaatctc gatcgtgagg tgcatcaagt gctcaagttc tgtcaaggcg
     1201 aactttctga cattgttggt gtctgggcta ccaagattga ccataataag gcaaaagcgg
     1261 tactacgggc ggttgacaga ggcattgaaa ccgatcgcct ctgtaatagc gctctcccca
     1321 aggagaaccc tgagaatgca gaatggattg ctattgtcga ttcctcgtcg acgcttgaag
     1381 aagctgcagc cagcgtctca aagaccgggc taggacgtcg tattttccgt gatatgagtc
     1441 ctgaagcaac cctcgctgat tatgaggatg ctctagatcg ttcttactat cagtcagcat
     1501 tgtcagtgat tcctaatcgt ggccctaatg cctcactacg ccgctatctc aagatggaaa
     1561 tcgctcacag ggatgtactc aatatcatgc gggcaatgcg tcaagagatt tcgtctgaga
     1621 agcgtgccgc catcttcctc ccaggcagcg gactttcccg cgccactgag acggccctga
     1681 ttcaggcgaa caacctcgat gatgttctcc aagcagttcg acgtacgttg tcgtttgacg
     1741 atagtggtct tgaagaggcc ttacagttgt attctgagtc caaaactatg gatccagtag
     1801 ttgatttatt ccaccacaag agaagcgaac tattacttcg tttttcacac ctgcatccaa
     1861 tctcggcgat gccgattgta tactacatcg agcgtaaatt gctcgaagtc gagaatctac
     1921 gcctgcttgt gcgcggtaag gcggccggtc tccctgagcc tgtgattgaa gcgcatttga
     1981 cattgtgagg attgaatatg gaaattgcag ttatcggtag cccggaattc actcttggat
     2041 tccagcttgc tggcgtaacg catctccata atcccgcgga tgaggaggaa cttgcctctc
     2101 tctgccgctc gatgattgcc gacaaggatg ttggtatcgt cgttctcgac tctggggatc
     2161 tttcccgact cccagagcga attcgcgatg aggttaacct cagcgtgacc cctaccttcc
     2221 ttggtattgg aaccgaggaa gacaacaccc tacgggagtc cattcggaag gcactcggtg
     2281 tcgacctctg gaagtaatta aaaaaaaacg gaagtgaaag aaatgagcaa taatgaaggc
     2341 gtcatctacc gaatttcagg acctgtcgta actgcgacag gaatagatgc aagaatgtat
     2401 gaagtggtcc gagtcggcca tgagaaattg atgggagaag taatcgagat acacggcgaa
     2461 caatccgtca tccaagtgta tgaggacacc tcagggattc gtcccggcga gcctgttctc
     2521 agcaccggac agacactctc agtccagttg ggcccgggtc tattgacctc catctatgat
     2581 ggaattcagc gtccactcca gactctggaa gaggtcatgg gcgtattcat cactcgtggt
     2641 gtagatgctg atggcctcga ccttgagaag aagtgggatt tcgttgctac cgcttctgca
     2701 ggtgatgagg tagtcggtgg acaaatcatt gggacggtcc aagaaaccga aaccatcact
     2761 cacaagatca tgattcctcc aaagtcctct ggaacaatca agtccatcga tagtggtgag
     2821 ttcactgtga ctgagacggt gtgcaccctt gacgatggca ctgagattca gatgatgcag
     2881 gaatggccag ttcgccatcc tcgtccttac actcagaaat acgcgccaga tactccgctt
     2941 gtcactggca tgcgaattct cgacttcctt ttcccactcg ctaagggtgg agcggcagga
     3001 atccccggtc cgtttggttc cggcaagacg gtaactcagc agtctcttgc gaagtactca
     3061 gacgcacaac tcgtggtcta catcggttgc ggtgagcgcg gaaatgaaat gactgaagtg
     3121 ctggacgaat tcccaggact aatagatcca aacactggca agccgctgat gaaccggact
     3181 gttatgattg caaatacctc aaacatgcca gtggcagctc gcgaagcatc tgtttacaca
     3241 ggaattacga ttgctgagta cttccgtgat cagggatacg acgttgccct catggctgac
     3301 tctaccagtc gatgggcaga ggctatgcgt gagatttcca gtcgacttga ggagatgcca
     3361 ggtgaggaag gttaccccgc atatctgtcc agccgcttag cggaattcta cgagcgtgca
     3421 ggtcgtgtcg agactctcaa tggtgacgat ggatctgtca cagtcattgg tgccgtttct
     3481 cctccaggcg gggatatctc cgagcctgtc agccagggta ctctgcggat tgtgaaggtt
     3541 ttctggggtc tagacgctgg tcttgctcga aagcgtcact tccctgcaat taactggctc
     3601 aactcctact ctctataccc gcagagtctg aatcagtggt tccgcgacaa tatcgcgagc
     3661 gacttcccag aagttcgaac tgagattagt gctttgctga aggttgaagc agagcttcaa
     3721 gaaatcgttc aacttgtcgg ttctgacgca ctacctatcg atcagcaact cacccttgag
     3781 gttgctcgta tgattcgcga gtacttcctg cagcagaacg gattcgatcc agtcgatgct
     3841 tacagtggtg tcgaacagca atatgcgatg gctaaggcca ttctaacttt ccagggcgag
     3901 gcaaagaagg ccatggccgc cggtgcccgc cttcaggacg ttgtaaacgt cccagcgcga
     3961 actgaactta tgcgtgctcg cttcgcagaa ggttacctgg agagtattgg aggccttgtc
     4021 gatgacatgg tcggtgaaat caccggaacg gtggaggcca actgaaggag ggatcgtgaa
     4081 tgactagcaa ggaatacaag acaatcacag acatcaaggg accattggtg ttcctagaga
     4141 agaccgaacc tgtcgcctat ggcgagattg tgacgattcg tctcagcgat ggttcgacga
     4201 agaacggcca agtgctcgac acttccgatg acgcggtcat cgtgcaggta ttcgaaggca
     4261 cagaagcaat cgatagacag gcaggagtca agttccttgg cgatgtcttc aagctccctg
     4321 tgagtcgaga tctcatcggg agaatcctcg atggtgcagg acgacctcgt gatggtggtc
     4381 cagatatcgt agcagaagaa aaggccgaca ttatcggtgc agcaatcaat ccgtattcgc
     4441 gtcaatctcc tcacgatttt attcagaccg gtgtcagcgc aatcgactgt tgtactacgc
     4501 ttgttcgtgg ccagaagctt ccgattttca gtgcatcagg tcttccgcac aacgacattg
     4561 cactccagat tgctcgtcag gcaaagctca aggatagcga tgaagagttt atcgtagtat
     4621 tcnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4921 nnnnnnnnnt gaagagttta tcgtagtatt ctgcgcaatg gggatcactg ctgaggagta
     4981 taacttcttc aggaccgacc ttgagcgcac tggcgctcta gagaatgcag ttctgttcgt
     5041 caatctcgct gatgatcctg cagtcgagcg gctcattaca cctcggcttg cgttgactgc
     5101 ggccgagtac ctcgcattcg agcacgacta tcacgttctg gttatctat
//
LOCUS       DUKB01000019            9916 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_62162, whole genome shotgun sequence.
ACCESSION   DUKB01000019 DUKB01000000
VERSION     DUKB01000019.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9916)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9916)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9916
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_62162"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1598
                     /locus_tag="HA345_00755"
     CDS             <1..1598
                     /locus_tag="HA345_00755"
                     /inference="COORDINATES: protein motif:HMM:NF015155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HIH83916.1"
                     /translation="GIDYSIHMQRTYERNRGNGEQPAEAWVNAFKELRVALTLAVFTT
                     VCAFVANIASPLPPVRNFGLALAIGVTAAFLSSTVVVGALHVIVSRWTNVQPIETDRR
                     RLFDTDARRITEFQKKTSAQVIIAVLLITIGSIGYSAVQLETQFDLTDFLSDEMETMQ
                     TRNAMYDSYESSTWKEVNILIINSTGDGIIQDDPTFLTGLWILDREISTTRGVVAPTG
                     ILFEDAKPSYDGPYPILRDAIEADPDFGERYNLMIAEGRVATMTNYSTGNTAAALFEL
                     STNTSSSSSFRGLTFEERVGRTIVFNDGKIAAANHRIDVEAADSTDSREIIREFNDVI
                     LKKDITDNIDGEVMLTGYLVKLEYVLDALSTSQISSTVISLIVSFFVLLVLTRRIAPS
                     FIVIVPVTLAALWVVGSMAVLGIHWNVLTVMVTALTIGLGIDYSIHMWKRFETLVERK
                     FAPWESLRITNSTTGAALCLSALTTAIGFLVLWFSPMPVIRDFGLVTALTVIFSLMMA
                     LGLLPLLLVYEAQAKESDESFQE"
     gene            complement(1584..2174)
                     /locus_tag="HA345_00760"
     CDS             complement(1584..2174)
                     /locus_tag="HA345_00760"
                     /inference="COORDINATES: protein motif:HMM:NF021513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2240 family protein"
                     /protein_id="HIH83917.1"
                     /translation="MSVEDQIEVRRLLAVTFQELDPDSSPSDTVMRIWSLDLHWTDSK
                     GAGELLEILIQNGWLSIEGSIVSCNVNLRDVEIPLGWSPMMRRMLSCIPMELVPEVET
                     SSSEVQTPSLVAQEESKKPLMLEKSSPSSNKPTDSMVAHIRPIRAFIAAESGLELAEV
                     QRRAQRKRTACPPMTMWMALLLLGREQRIDLSSFLE"
     gene            2230..3378
                     /locus_tag="HA345_00765"
     CDS             2230..3378
                     /locus_tag="HA345_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83918.1"
                     /translation="MEEQTEASAEDFKPSLENGIRPRRRWKVIAIVSVVTILLLSYTA
                     YSALGVYLTRTDPIPVENYTVIDIKGNIGQATCMTWLDDTHLLVCDVGQGSIIVYTLS
                     EDQLIESTTLLSGLQDPHGIHIDNSTLYLSERGRLTAHPFTGNLAHEWNFSESRVLVE
                     GIPAKNHQTNAVHAGPNGTLIWHSGSTCNVCEEEDNRNAALLMVNPDTGEHSIIASGV
                     RNSFDGAWIEDVGYVFTDNGRDWEGNDFPPEELNLLEIGADYGWPDDIPDDPVPEGTL
                     GPISTFTPHSSANSIAVRPDNGTVRGVEHSLFVTSFGSWNANPATGGTIIRVDLFQDE
                     NASQGWRGDTTVIVEDAFGILPIAFHPNGDLWFANYMSGQAHIVRNDS"
     gene            3421..4617
                     /locus_tag="HA345_00770"
     CDS             3421..4617
                     /locus_tag="HA345_00770"
                     /inference="COORDINATES: protein motif:HMM:NF025030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HIH83919.1"
                     /translation="MARDYVARDPRTGKRISTGKREKHVQKAAFSAPEGPWKSLLPGQ
                     IRDLIDQRVSSVEVRYMDERLLLDRLDAIRGIPSLPRADDEYVHRTILDGLCSRSSEE
                     RIACLDVFLVISLREADEMMEMLDVMVDDPDQKVRNHARKVLIDTAPIFPSALRDTIA
                     RLVRSEERVVRNDGFSALNQAARQWPEVGVHHLDELIREDEVDLRRRSARVLKAIAQR
                     AGGAGWDLIGWTLDDEDSEVRRIASRALPTLAESAPSIAQIMIEETLFDEDDEVRQNS
                     LKALARMDKDDSRTRTLILDGCRHNDPRIRMSCVKMLPIILGEVERRQTALELLMDET
                     DHSIRNRLENMSKDLAIEGTEAERNRFLAPLPKVEMEEDMEQTPSTEPKSKPNDTGSD
                     TLSQND"
     gene            4666..4911
                     /locus_tag="HA345_00775"
     CDS             4666..4911
                     /locus_tag="HA345_00775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83920.1"
                     /translation="MSEGADDHKLEQFERLWDGRTPKGQNVTKAHKFRHYMRQHVLQI
                     LPANRKRGNKQRFLTKDNCRKYWMGELQAEIEAADSF"
     gene            4926..6347
                     /locus_tag="HA345_00780"
     CDS             4926..6347
                     /locus_tag="HA345_00780"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012492.1,HMM:NF012493.1,HMM:NF015817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH83921.1"
                     /translation="MPALRFSDWDLPPSIQTAIDSQGWENPTEIQRDAVPPARSGKDV
                     IGQARTGSGKTAAFGIPIIERVEAKGSPQAIALCPTRELATQVCEELKWLQGDLGLSI
                     LPVYGGTDLEKQAAKLDNGVDIIVGTPGRVIDMTKRGHLDLAGISILCLDEADRMLDM
                     GFWPDISWIVGNMPERSQTLLFSATFPQEIIDATEEFLTNPVTVMSEDLEVEVPEIDQ
                     KWIRIGRANKLWAVGRILSQMDDDDQCLIFCNTKRMVELLDERLGKHRFECSTLHGDM
                     SQNKREKVMDGYRDASVQVLVATDVAARGLDVDGVTIVINYDLPDNPEDYVHRIGRTG
                     RMGRSGTAWSFVGREDLLQLDRIRSTWSLTIDQAETPELPESVKHDPIRARMDWSESS
                     DPFGMVRISISAGSSIIRSTLQLSDWIMENAKVKELAIGEIQISDDNTLVDIHSESAQ
                     RVLEIIERREFEGQRLEANLAIR"
     gene            complement(6348..7286)
                     /locus_tag="HA345_00785"
     CDS             complement(6348..7286)
                     /locus_tag="HA345_00785"
                     /inference="COORDINATES: protein motif:HMM:TIGR04178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83922.1"
                     /translation="MREAVGRPSEDIPLPELLRMIGAVLGLVIILLLGEILFRWFIEP
                     ANTLLPLQLLEAWLWSSISELIWHGSTDLVAHSTGPLTQVNLLHPDFVDGYIPLYVSD
                     ECAGIHEFLFLSMMVMLTPAFDFRTKMRHLSYAAIILFLLNMVRLIVLYPLAVNGCEG
                     TAGMVVGCDAGLYKFHDFVLRYGSLIVLVVGWTFWFNLTGARSEVRRFWKRIPTLQGI
                     RADVQLENLREDAPRVAALSGFVFLGLWGSWIMLTGGDASAADACEGIISATCDRVTT
                     EHHDAIGRGLRLLLISVGMGALTLTRPRFAWAEEEE"
     gene            7390..7629
                     /locus_tag="HA345_00790"
     CDS             7390..7629
                     /locus_tag="HA345_00790"
                     /inference="COORDINATES: protein motif:HMM:NF013379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HIH83923.1"
                     /translation="MADVRVVDVVGFHCPVPVHETRKALSEMESGSVLEVISDDRESL
                     HDIPALCDRMKIKLMTVEEDAGEYIFRILNEEVKE"
     gene            7626..8252
                     /gene="ribA"
                     /locus_tag="HA345_00795"
     CDS             7626..8252
                     /gene="ribA"
                     /locus_tag="HA345_00795"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HIH83924.1"
                     /translation="MTRTIEEVPHVPADARLPTSHGDFRIRVFNDQNNLDHVALTLGD
                     MTGPDPVLVRVHSECLTGDVLGSLRCDCGPQLDAALKAICERGWGALLYLRQEGRGIG
                     LHAKIQAYRLQDGGADTLDANLKLGLPADARNYSIAAQMLQAIGVEEVALLTNNPDKV
                     SQLEEYGITIAERVPLIVGISDENVEYLRTKGERMGHVIAQEDLKNPK"
     gene            complement(8276..8350)
                     /locus_tag="HA345_00800"
     tRNA            complement(8276..8350)
                     /locus_tag="HA345_00800"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8312..8314),aa:Pro,seq:tgg)
     gene            complement(8392..8829)
                     /locus_tag="HA345_00805"
     CDS             complement(8392..8829)
                     /locus_tag="HA345_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83925.1"
                     /translation="MADQRWDMLRCDSCGRASGGRSGQRSIACRHCGSTSLTIAQSFD
                     NAGKMAQAVSSANLPPEIRKEVEDALSRRPELNPSNGSSIRPNPVRMIQSAAKDDGSI
                     DMDLLVREAVKVGVDEDEVKRWIETSEIEGALIREGPGEYRLL"
     gene            complement(8870..9499)
                     /locus_tag="HA345_00810"
     CDS             complement(8870..9499)
                     /locus_tag="HA345_00810"
                     /inference="COORDINATES: protein motif:HMM:NF013979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83926.1"
                     /translation="MDFSIGGQSATPSASSPQATGTPTGGWLMTAVAPWGESEEDAFD
                     QCLVDLGLGDCRLVQVKGAMLPMGFTAEQPRPLPMGSLVECHFSVAYSWDGGTACAGA
                     AWARCNTPEGEEVAIVATIATEEDYEETEILLKRQMQRRLASRDLEIIERGIAVDEIT
                     AAEGHWGGVIAALILPDSLGIGGPVGRVRESSSSTGLRSAGDGGGNFSL"
     gene            9551..9847
                     /locus_tag="HA345_00815"
     CDS             9551..9847
                     /locus_tag="HA345_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83927.1"
                     /translation="MVANSPSISMRSAPALFIFGWIAAVLGYFGILPENLGAALAILA
                     WTTSVTLILLDRIAKYRAEVSPLQDVWSDGETEDEDAMVKPLANPRELGLDVPL"
BASE COUNT         2692 a         2546 c         2373 g         2305 t
ORIGIN      
        1 tcggcatcga ttactccatc catatgcagc gaacttacga gagaaatagg ggcaatggag
       61 agcaaccagc ggaagcatgg gttaacgcat tcaaggagct gcgtgtcgcc ctcacactcg
      121 cggtgtttac cacggtttgc gcctttgtcg caaacatcgc ttcaccactc ccacctgtcc
      181 gcaacttcgg cctcgccctc gccataggtg tgactgcagc attcctctca tcgactgtgg
      241 tcgtaggagc cctacatgta atcgtatcac gttggacaaa tgtccaacca atcgaaactg
      301 atagacgtcg actattcgat accgatgctc gacgaatcac ggagttccaa aagaaaactt
      361 ctgcacaagt tatcatcgct gtcctgctca ttacaattgg gtcaattggc tattcagctg
      421 tccaacttga gacccagttc gaccttactg acttcttatc tgatgaaatg gagacaatgc
      481 agacacgtaa cgcgatgtat gattcgtatg aatcctcgac atggaaggag gtcaatatcc
      541 tgatcatcaa ctccacaggc gatggcatca tccaagacga ccctactttc ctgactggac
      601 tttggattct cgatcgggaa atatccacta cacgaggagt cgtagctcca actggaatct
      661 tatttgaaga tgcaaaacca tcctacgatg gcccttatcc tattcttcgc gatgccatcg
      721 aagcagatcc tgatttcggc gagaggtata atctgatgat tgctgagggt cgagtcgcaa
      781 cgatgacgaa ctatagcaca ggcaatactg cagcagccct gtttgaactt agtacgaata
      841 caagttcatc atcctctttc cgtggcctga catttgagga gcgtgtgggt cgaactatcg
      901 tgttcaacga tggtaaaatc gctgccgcca atcatcggat agatgtagaa gccgcagaca
      961 gcacagatag tcgagagatt atccgtgagt tcaatgatgt catcctcaag aaagatatca
     1021 ccgataacat cgatggagag gtaatgttga ctggatatct tgtaaaactc gaatacgtcc
     1081 tagatgcttt gagcacctct cagattagtt cgactgtaat cagcctcatt gtgtccttct
     1141 tcgtactact cgttttgact cggcgtatcg ctccatcatt cattgtaatc gtgccagtta
     1201 cacttgctgc tttatgggtc gtcggttcga tggcagtcct cggtattcac tggaacgtac
     1261 tcactgtgat ggtcactgca ttgacgattg gcctaggaat cgattattcc atccatatgt
     1321 ggaaacgatt cgagacgtta gtcgaacgta aattcgcacc gtgggagtct ctccgaatca
     1381 ccaactccac aactggtgca gctctatgcc taagcgcact cacgactgcc ataggattcc
     1441 ttgtcctatg gttctctcca atgcctgtta tccgtgattt cggacttgtt actgctctaa
     1501 ctgtaatctt ctctcttatg atggctcttg gtctgcttcc tctcctgctt gtctatgaag
     1561 cacaagctaa agaaagcgat gaatcattcc aggaatgaag aaagatcgat tctttgttca
     1621 cgccctagta ataacaacgc catccacata gtcattggag gacaagctgt tcgttttctt
     1681 tgggctcgtc gctgcacttc tgcaagttcc aaaccagact ctgcagcaat aaaagcccga
     1741 atcgggcgaa tatgagcaac catagaatca gtaggcttgt tagatgatgg agaggatttt
     1801 tccaacataa gcggtttctt tgactcttct tgggcaacca acgatggcgt ctgaacctct
     1861 gaagaactag tttccacctc tgggaccagt tccatcggaa tacaggagag catcctacgc
     1921 atcatcggcg accaccccag aggaatctca acatcacgta gattgacgtt acacgaaaca
     1981 atactaccct caatcgagag ccaaccattc tggatgagaa tctctaggag ttctcctgca
     2041 cccttggaat cggtccaatg gagatccagg ctccatatcc tcattacagt gtctgaaggc
     2101 gaactatcgg ggtcgagttc ctgaaatgtc acggccagca gacggcgaac ctctatctgg
     2161 tcctcaacgg acattatgtt catctggaca tcgacaggac ttcaactcct cgcgaacaca
     2221 gcctgtatca tggaggagca aacggaggca tctgcagagg atttcaaacc ctcactagag
     2281 aatggaataa ggcctcgccg ccgttggaag gtcatagcaa tcgtatcagt ggttaccatt
     2341 ctactcctga gctataccgc ctactccgca cttggagtat acctgacgcg cactgatcca
     2401 attccagtag agaattatac tgtgattgat atcaaaggca acatcggtca agcgacctgt
     2461 atgacctggt tggacgatac gcacttgctt gtctgcgatg tagggcaagg aagtatcatc
     2521 gtctatactc tatccgagga ccaacttatc gaaagcacta ccctgttgag tggactacag
     2581 gacccccatg gtatccacat cgacaatagt acgctatatc tctcagaacg ggggcgacta
     2641 actgctcatc catttactgg aaacctagct cacgaatgga acttctctga atctcgtgtc
     2701 cttgtagagg gtattccagc gaagaatcac cagacaaatg cagtacatgc tggaccaaat
     2761 ggaaccctga tttggcattc tggaagtacc tgtaatgtct gtgaggagga ggacaatagg
     2821 aatgctgccc ttctcatggt gaatccagat acaggtgaac attctatcat cgctagtgga
     2881 gtcagaaact cctttgacgg agcatggatt gaagatgtag gatacgtgtt cacggataac
     2941 ggtcgagact gggaaggaaa tgacttcccc ccagaggaac tgaatctgct cgaaatcgga
     3001 gccgactacg ggtggccaga cgatatccca gacgacccag tgcccgaagg tacgctaggc
     3061 ccaatttcta cttttacacc tcatagttcg gccaactcta tcgctgtccg ccctgataat
     3121 ggaacagtca gaggggtaga acattcactc tttgtcacct catttggatc atggaacgcc
     3181 aatcctgcaa caggcggtac aatcatccga gttgacctct ttcaggatga gaatgcaagt
     3241 caaggttgga gaggagatac cacggtgatt gtagaagacg cctttggcat tctaccgatt
     3301 gctttccatc caaacggtga tctctggttc gccaactaca tgtcagggca ggcacacatc
     3361 gtcagaaacg attcatgacg ggtgttggtt catatcctgt cgcgtcatcg aaccggcaga
     3421 atggccaggg actatgtcgc tcgtgacccg cgcacgggca agcggatttc caccggtaag
     3481 agagaaaagc atgttcagaa agcagcattc agtgctcccg aaggaccatg gaaatcactc
     3541 cttcccggac agattcgaga tttaatcgac caacgtgttt ccagcgttga agttcgttac
     3601 atggatgaac gtcttcttct cgacagatta gatgcgattc gaggcattcc atcactcccg
     3661 agggcagacg acgagtatgt acaccgtaca attctagatg gattatgctc ccgctcctca
     3721 gaagagagaa ttgcctgtct cgacgtattc ctagtaatat cgctccgaga ggcagatgaa
     3781 atgatggaga tgctagatgt catggtagac gatcctgatc agaaggttag aaaccatgcg
     3841 agaaaggttc tgattgatac tgcgccaatc ttcccatccg cactgagaga tactatcgca
     3901 cgcctcgttc gctctgagga gcgagtcgta cgaaatgacg gattcagcgc attaaatcaa
     3961 gccgcacgcc aatggccaga ggttggagtc catcatctcg atgaactcat ccgtgaagac
     4021 gaagttgacc tacgccgacg ttcagcacga gtcctgaagg ccatcgctca acgtgcagga
     4081 ggagcaggtt gggaccttat tggctggacg ctcgacgatg aggattctga agtccgccga
     4141 atagcaagta gggcacttcc gacactcgct gaatccgctc caagcattgc tcaaattatg
     4201 attgaagaga ccctttttga tgaagacgat gaagtacgtc aaaattcact caaggctctt
     4261 gcacggatgg acaaagatga ttctagaact agaacactaa tcctcgatgg atgccgtcat
     4321 aatgacccga gaattcgtat gtcttgcgtg aagatgctac cgattattct tggcgaggta
     4381 gaaagacgtc agactgcact tgaattgctt atggatgaaa ctgatcattc aatccgtaac
     4441 cgtctggaga acatgtcaaa ggatcttgca atcgaaggca cagaagctga acgtaaccga
     4501 ttccttgcac ctcttccaaa agtagagatg gaggaagata tggagcaaac tccctctact
     4561 gagccgaaat caaaacctaa tgataccggc tcagacaccc tctcacaaaa cgattgacgc
     4621 gccgtcagcg tcatatatgg gtgcaaggtc ggcaaaacga cgaacatgag tgaaggcgcc
     4681 gatgaccaca agctcgagca gttcgagcga ctctgggatg gccggacccc taagggccag
     4741 aacgtgacca aggctcacaa gttccggcac tatatgcgcc agcatgtcct acagattctt
     4801 cctgcaaacc gcaagagggg aaacaagcaa cgtttcctga ccaaggataa ctgtcggaaa
     4861 tattggatgg gtgaactcca agcggagatt gaagccgccg actcgttctg aaggtcggtt
     4921 ccaacatgcc tgcacttcgt ttctcggatt gggacctccc tccttcaatc caaaccgcca
     4981 ttgattcaca aggctgggaa aaccccacgg aaatccagcg tgacgctgtc ccacctgccc
     5041 gctctggcaa agacgtcatt ggacaggcac gcactggatc aggtaagacc gctgcctttg
     5101 gaatccctat tatcgaacgt gtcgaagcaa aaggatcccc tcaggcaatc gcactatgcc
     5161 ctactcgcga acttgcgacg caggtctgtg aagaactcaa gtggctccaa ggtgacctcg
     5221 gcctatccat tctaccagta tacggtggaa ccgaccttga gaagcaggct gcaaagttgg
     5281 acaatggcgt cgacatcatt gtcggcacac ctggccgagt catcgacatg acgaaacgcg
     5341 gacatctcga tctagctggg atttcgatac tctgtctcga cgaggcagat cgtatgcttg
     5401 acatgggatt ctggcccgac atatcctgga ttgttgggaa catgccagag cgttctcaga
     5461 cccttctttt cagcgcaacc ttccctcagg aaattatcga cgctaccgag gaattcctca
     5521 caaatccagt cactgtgatg agtgaagatc tagaggttga ggttccagaa atcgatcaga
     5581 agtggattcg tatcggacgt gctaacaaac tctgggcagt cggacgcatc ctctcgcaaa
     5641 tggatgatga cgatcaatgc ctcatattct gcaacacaaa acgaatggtc gaactgcttg
     5701 atgagcgcct tggtaagcac cgctttgaat gctcgactct acacggagac atgtcacaaa
     5761 acaaacgtga gaaggtcatg gacggatacc gcgatgctag tgtccaagta ttggtcgcca
     5821 ccgatgtagc agcacgtgga ctcgatgttg atggcgtaac tatcgtcatc aactatgatt
     5881 tacccgacaa tcccgaagac tacgtacatc gaatcggcag gacaggacgt atgggacgta
     5941 gtggaactgc atggagtttt gttggtcgtg aggacttact tcaacttgat cgaatccgtt
     6001 cgacctggag tctgacaatc gatcaggctg aaacacccga acttccagag agtgtgaagc
     6061 acgaccccat tcgtgcacgc atggattggt ccgaatcctc cgacccattc ggcatggtcc
     6121 gaatttccat tagcgcaggg tccagcataa ttcgcagcac cctccagctc tcggattgga
     6181 tcatggagaa cgctaaggtc aaagaactcg caattggtga aattcagatt tcagacgaca
     6241 acacacttgt agacatacac tcagaatctg cccaaagggt tctcgaaatt attgagcgtc
     6301 gcgaattcga agggcaacga ttggaagcaa atcttgcgat tcgctgatta ctcctcttct
     6361 tcagcccaag caaaccttgg tcgcgtaagt gtgagtgcac ccattcccac tgaaattagc
     6421 aggagtcgta atccacggcc aatggcatca tgatgctctg tggttactcg atcacaagta
     6481 gcagaaatga tgccttcaca ggcatcggca gcactcgcat ctcctcctgt gagcatgatc
     6541 catgaacccc aaaggccgag aaatacgaaa ccagatagag ctgcaacacg aggggcatcc
     6601 tcacgaagat tctctaattg aacatctgca cggattcctt gaagtgtggg gattcgtttc
     6661 cagaatcgac gcacttcaga ccgcgctcca gtcaaattga accagaaagt ccatccaaca
     6721 actaggacga ttagcgagcc gtagcgaagc acgaaatcat ggaatttgta tagaccagca
     6781 tcgcaaccaa cgaccatccc tgccgtcccc tcgcaaccat tgactgcaag tggatacaac
     6841 acgatgagtc gaaccatatt cagtaaaaac aagatgattg ctgcataact tagatgtcgc
     6901 attttcgttc gaaaatcgaa tgcaggagtg agcatgacca tcattgaaag aaacagaaac
     6961 tcatggattc ccgcgcattc atcagagaca tagagtggaa tgtaaccgtc cacgaaatcg
     7021 ggatggagca aattgacctg tgtcagagga cctgtcgaat gggcaacaag atctgtcgaa
     7081 ccgtgccaga tgagttctga tatcgaagac catagccatg cttcgagtaa ttgtagtggc
     7141 aacagagtgt tcgctggctc gatgaaccaa cggaaaagaa tctcacccaa tagaagtatg
     7201 attacaagac cgagaaccgc tccaatcatt ctcagtaact caggcaacgg gatatcctct
     7261 gatggacggc caacagcttc ccgcataggt caccattcac ccccacctgt ttcaatttgc
     7321 ctcgagcagt atgggaaatt agagattcat aatgaaaccg ttgaagaacg accccccgta
     7381 ggatggtgca tggccgacgt gcgagtagtc gatgtcgtgg gtttccactg ccctgtccca
     7441 gtgcatgaaa ctcgtaaggc cctcagtgaa atggagagtg gaagtgttct cgaagtgatt
     7501 tcagatgaca gagagagcct ccatgacata cctgcactct gtgatagaat gaagatcaaa
     7561 ctgatgacgg tagaggagga tgcaggagaa tatatcttca gaatcctcaa tgaggaagtg
     7621 aaagaatgac acgcaccatc gaagaagtcc cccacgtccc agctgatgcc cgccttccca
     7681 cctcacacgg tgattttcga atccgtgtct tcaatgacca gaataacctg gaccatgttg
     7741 ctcttacatt aggagatatg accggaccag accctgttct tgtcagagtt cactccgagt
     7801 gccttacagg cgacgtatta gggagcctac gatgtgactg tggaccccaa ttagatgctg
     7861 ctttgaaggc aatctgtgag cgtggttggg gtgcactact ctatctgaga caggaggggc
     7921 gggggatcgg tctccacgca aagattcagg cttaccgcct ccaggacgga ggagcagaca
     7981 ccttggatgc aaatctcaaa cttggattac ctgctgacgc gagaaactac tcaattgcgg
     8041 ctcaaatgct tcaagcaatt ggagttgaag aagtcgcatt actaaccaac aatcctgaca
     8101 aagtaagcca acttgaggaa tatggtatta ctattgcaga acgtgtccca ttaatcgttg
     8161 gaattagtga tgagaatgta gaatatttgc ggacaaaggg cgaacgtatg ggacatgtaa
     8221 tcgcccaaga agacctgaaa aatcccaagt agaattccta aagagagtgg aaaagtgggc
     8281 ccgcccagat ttgaactggg gtctaatggt cccaaaccat caagtatagg ccaaactaac
     8341 ccacgggccc ttgttcagcc tgacgaaatg actgcccgtc atgaatgttc ctcagagtaa
     8401 acgatactct ccagggccct cacgaataag agcgccttca atctcagacg tctcaatcca
     8461 ccgcttcacc tcatcctcat cgacgccaac cttcactgct tctcgaacta gtaaatccat
     8521 gtcgattgaa ccatcatcct tcgcagcaga ttggatcatc ctcacgggat tgggtcgaat
     8581 agaactcccg ttacttggat tcaattctgg tcgacgcgag agagcatcct ccacctcctt
     8641 gcgaatctca ggtggaagat ttgcagatga gaccgcttga gccatctttc cagcattatc
     8701 gaaggattga gcgatagtca aagatgtgga cccacaatgt cggcaagcga tgctacgttg
     8761 ccctgaacgc ccaccactag cccggccaca agaatcacaa cgaagcatgt cccaacgctg
     8821 gtcagccatc ggtgtttgtt caaggacggg agtgtttgag caattcggat taaagagaga
     8881 aatttccgcc accatcacct gctgagcgga gaccagtaga gctactcgac tcacggacac
     8941 gccctacagg gcctccaatt ccaagcgaat cagggagaat aagtgcggca attactccac
     9001 cccaatggcc ttcagcggca gtaatctcat ccacagcaat gcctcgttcg ataatctcga
     9061 gatcacggct cgccagacgt cgctgcatct gtcgcttcag tagaatctct gtttcttcgt
     9121 aatcctcctc agtagcgatt gtagcaacaa tagctacctc ctcaccctct ggcgtattgc
     9181 atctcgccca tgcagcacca gcgcatgcgg taccaccatc ccaagagtat gctacagaga
     9241 agtgacattc gacgaggctg cccattggta gaggacgagg ttgctctgca gtgaaaccca
     9301 tcggaagcat cgcccccttg acctgaacaa ggcggcagtc gccaagacca aggtcgacaa
     9361 gacactgatc gaaggcatcc tcttcagact cgccccaagg agcaaccgcc gtcatcaacc
     9421 agccaccagt aggcgtccca gtagcctgcg gtgatgatgc actcggagta gcactctgtc
     9481 cgccgatact gaagtccatg tgattcggag gaccttcggg ttcatcaacg ggaaggttgg
     9541 tgactatgca atggtagcca attcaccatc aatctcgatg aggtcggctc cagccctctt
     9601 catcttcggt tggattgcag cggttctagg ctatttcggc atcctacctg agaacttagg
     9661 agcagccctc gccatccttg catggactac atcggttact ctgatcctcc tagataggat
     9721 agcaaaatat cgagctgagg ttagtccact tcaagacgtg tggagcgacg gagaaaccga
     9781 ggatgaagat gcaatggtca aacctctcgc taatccacgt gagttaggac ttgatgtccc
     9841 actctaatct catagaagac gaatggattc aagattatga ggagcagcag tacgtacctt
     9901 gaacgtctct gtgagt
//
LOCUS       DUKB01000020            4480 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_453853, whole genome shotgun sequence.
ACCESSION   DUKB01000020 DUKB01000000
VERSION     DUKB01000020.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4480)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4480)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4480
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_453853"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..3942
                     /locus_tag="HA345_00820"
     CDS             <1..3942
                     /locus_tag="HA345_00820"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013125.1,HMM:NF024491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83928.1"
                     /translation="GSVTDELTYPSVRVGHSKIRSVNGLTWTDALFPTPGDSDAASVN
                     GTSSLSINEIMVNGTVNDAPYPDGEWIELRVHPDETTGVGLAGYTIRTGTGGSIDLTD
                     ALVECSCTIVSPHGLGPGEYGVIQLNGTGVEIIRSLGDTISLVDSSEKVVQTITWATN
                     LPAGRTMTPIAGDPINGWTLSNEETPAAANPDQTSGNNEGGIDLQIVEILPNPFGNDS
                     AAALAGDGEFIELWNNGTSEVDLSGWSIISGSTLALNEQTTSDMSPDVGERVVIRPTD
                     PSVFWLSNTAGSISLHDALGNPIDSMVYSSTLPGAAMVANLTSSSSWIYAPTPTPGTA
                     TPTFDNPYAGSNDLVITEIMVQCGTSGSDSVGILGEWIELRNNGTQTIDLSRWHILDE
                     DGTGMLATTNQIWNGTSMSIAPGEHVVFRPEEAFMDNFGDTIRLMNPDGTMISTVYWL
                     NSQSCISIEPRFGWGPTLMPSPGVANPMPDQWDGTSSVIFSRIMVGEVNSLRDHDWFE
                     IRNIGTQTLDMSGWMISRHREDSPAWNDTFRGLVLGPGESAIITGDPAHLLEDAALDA
                     YGGNDVMYNMPWLPDSGGGFQLVSPTGIVVDTIVYGDGDPNIEGWTGPSITPPSSSDP
                     VGLIMMRGDGCASTPDAIPDTDSAADWELRWLRMGASLFCDGGVFSTTGNITTSISPG
                     HALGDLVQWINAAESDIHVHLYELTSYELSRALRNALDRGVEVTVLLEGGVYSSYDNM
                     AVSRGIASDLHTAGATVLWMVEPPSSTSPESPYKYIHSKVAVRDSSSVWMSSGNWKSS
                     SFPLDGYSGNRDWSVFIDSEDIAQLVLSRMTWDENTSHLHIEAFDPMDSSHGTPDGWV
                     TPIDRLLEVNPSPAGVETTHTGAIDGKLLTCPDDCISGLVDLIDSSEDTVDLSLQYFQ
                     DGWGWGYGDNPLIAALERATLERNVTIRLLLNGYYTDDPFDDRDMLNLVNNDWNRTLG
                     ADATAILMSQGGDVTKLHNKGIIIDGESVLISSINWGSNSALRNREMGIVINEVTIAG
                     AYLASFEEDWNRLDDVTDTDGDGMIDKYEMKWGLNRTSTIVDGSPLAEQSQDWDGDGL
                     SNLQESNHDSDPFSRDTDGDCIDDPDELAFAAQRGITNTAAMNLVDADEDGFEDHIEF
                     GCSEAPAPVDNTTPGESNDDGDDDPGGSFGLREDPLESNAAKALLALVIFSGIALGLA
                     VALMLMKQDDGFVDEVLVDDSGYIFDSPQTEDAPENQTKQRVILAGTSVGSEGSTARE
                     AKSGKDDGVFGAPQLDAYNFPGWTDEEVQSYLASGWTVDQLQQKHAEEHGE"
     gene            3950..>4480
                     /locus_tag="HA345_00825"
     CDS             3950..>4480
                     /locus_tag="HA345_00825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014398975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HIH83929.1"
                     /translation="MRSAEIARNIQRGEVDESDIHDLIQGVVSRDGAQWSDEEVVEVL
                     QSIFEHGLEPENTGRLTAGMMHSGKILKWPEEWKHLVVDKHSTGGVGDKVSIPLAPAL
                     AACGLKVPMISGRGLGHTGGTLDKLESIPGFNVQLHTQSIQDQVAEIGVAMVGQSEDL
                     VPADRRMYALRDVTGTV"
BASE COUNT         1162 a         1076 c         1192 g         1050 t
ORIGIN      
        1 ggttcagtta cggacgaact cacataccca tcagtcagag tgggccactc caagattcgc
       61 agtgtaaatg gacttacctg gactgatgcg ctcttcccca caccaggaga ctcagacgcg
      121 gcatcagtaa acggtacgag cagtttgtcg attaacgaaa taatggtcaa tgggactgtc
      181 aacgatgcac cctaccctga tggcgaatgg attgaactcc gtgtacatcc cgatgagaca
      241 acaggtgtag gacttgctgg atacacgatt agaaccggta ctggtggttc catcgacctg
      301 actgatgccc tagtagaatg ttcttgcact attgtcagcc ctcatggact cggacccgga
      361 gaatatggcg taatccagtt gaacggcact ggagtggaga ttattcgctc tctaggcgat
      421 acgatatccc ttgtagactc ctccgaaaag gtagttcaga caatcacttg ggcaaccaac
      481 cttcccgcag gtcgtaccat gacaccgatt gcgggtgacc cgattaatgg atggactctg
      541 tcaaatgaag aaacgcctgc tgctgcaaat cctgatcaga cctctggcaa taatgaggga
      601 ggtatcgact tacagattgt cgaaatccta cctaatccct ttgggaacga ctccgcagcc
      661 gctttggcgg gcgatgggga attcatcgaa ctctggaata acgggacttc cgaggtggac
      721 ctatcaggat ggtcaataat cagtggatcg acacttgccc taaacgagca gactacgagc
      781 gatatgagtc cagatgtagg agaacgagtg gtgatccggc caacagaccc gagtgtgttt
      841 tggctttcaa acacagccgg ttcaatcagc ctgcatgatg ccttaggtaa cccaatagac
      901 tcgatggtct actcaagtac cttgccaggt gctgcgatgg tagccaatct cacttccagt
      961 tcctcttgga tatacgcgcc cactcctact cctggcaccg ccacgcctac ctttgacaat
     1021 ccatatgcag gatctaacga ccttgtaatc acagaaatca tggtgcaatg cggcacatcc
     1081 ggttccgatt cagtagggat acttggcgaa tggattgaac tgcggaataa tggcactcag
     1141 accattgatt tgagccgatg gcacatcctc gatgaagatg gaacaggtat gcttgctaca
     1201 accaatcaga tttggaatgg aactagtatg agtatcgctc ctggcgaaca tgtagtcttc
     1261 aggcctgaag aggcattcat ggacaacttt ggggatacta tccgtctcat gaacccggac
     1321 ggaacgatga tttcgaccgt ttattggctc aacagccaga gttgtatctc gattgaacct
     1381 cgatttggat gggggccgac tctaatgcca tcacctggtg tagccaatcc aatgcccgat
     1441 caatgggatg gaacatcgag tgttatcttc agtcggatta tggtgggtga ggtcaactct
     1501 ctgcgggatc atgattggtt cgagatacgc aacattggca cacagacact cgacatgtct
     1561 ggatggatga tttcacgaca tcgtgaagat tctccggcat ggaacgacac cttccgtgga
     1621 ttagttctcg ggccaggaga gagcgcgatt atcaccggag atccagccca cctccttgag
     1681 gatgcagcct tagatgctta tggcggaaat gatgtgatgt acaatatgcc ttggcttcct
     1741 gattcaggag gtggattcca actcgtgtcc cctactggaa tcgtcgtcga tacaatagtc
     1801 tacggcgatg gagaccctaa catcgaaggt tggactggcc catcgattac gcctccatca
     1861 agttccgatc ctgtcggcct gatcatgatg cgtggcgacg ggtgtgcttc gacaccagat
     1921 gcaattccag atacagattc agcagcagat tgggagctgc gctggcttcg catgggagca
     1981 tccctattct gtgacggggg agtattctcc accactggaa acatcactac gtctatctca
     2041 ccggggcacg cacttggtga tttagttcag tggattaatg cggcagaatc agatattcac
     2101 gtacatctct acgaacttac aagttacgaa ctttctagag ccctcagaaa tgcactagac
     2161 aggggcgttg aggtaacagt cttactcgaa ggaggcgtct acagttcata cgacaacatg
     2221 gccgtgagtc gcggcattgc aagcgacttg catactgctg gagcgacagt cctctggatg
     2281 gttgaaccac cctcatcaac ctcgccagaa tctccataca aatacatcca ctccaaggtc
     2341 gcagttcgag attcatcctc tgtctggatg tccagtggaa actggaagtc gagcagcttc
     2401 ccccttgatg ggtattcagg gaatcgcgat tggtctgttt tcatcgattc agaagacatt
     2461 gcacaacttg ttctatcgcg gatgacttgg gacgagaaca catcgcacct ccacattgaa
     2521 gcattcgacc caatggattc cagccacgga acacctgacg gttgggtgac acctattgat
     2581 cgcctactcg aagtaaatcc ttcaccagcc ggagtagaaa caactcatac cggagcaatc
     2641 gacggtaagc ttctgacttg ccctgatgat tgcatcagtg ggcttgtcga tttgattgat
     2701 tcatctgaag atacggttga tctgtccctc caatacttcc aagatggttg gggctggggg
     2761 tatggggaca acccactgat tgctgcactt gaacgggcaa ctttagaacg aaatgtcaca
     2821 attcgcctcc tcctgaatgg ctactatacc gatgacccct tcgacgaccg agacatgctg
     2881 aacctagtca ataacgactg gaatcgcacg ttgggcgcag atgctactgc aattctcatg
     2941 tcgcagggag gcgatgtcac caaactacac aataagggca taatcatcga tggggaaagt
     3001 gttctgatta gtagtatcaa ctggggtagt aatagtgctc tgaggaaccg tgagatgggg
     3061 attgtaatca atgaggtgac aattgcaggt gcttatctcg cctcatttga ggaggactgg
     3121 aatcgcttgg acgatgttac tgataccgat ggcgatggga tgattgacaa gtatgagatg
     3181 aaatggggct tgaatcgtac aagcactatc gtcgacggca gcccacttgc agaacagtcc
     3241 caagattggg acggtgacgg actctcaaac cttcaggaat caaatcacga cagtgatcca
     3301 ttctcaagag acacagatgg cgattgtatc gatgatcctg atgagttggc cttcgcagca
     3361 caacgtggga tcaccaacac tgccgcgatg aacctagttg atgcggatga agatggcttt
     3421 gaggatcaca tcgaattcgg ttgcagtgaa gcacccgcac cggtagacaa tacaacacca
     3481 ggcgagtcga atgatgacgg ggatgatgac ccagggggtt ctttcggact ccgcgaggac
     3541 ccattggaat cgaatgctgc gaaggctctg cttgctctag taatattctc aggcatagct
     3601 cttggattgg ctgttgctct gatgttaatg aagcaagatg atggcttcgt tgatgaggtt
     3661 ctagtggatg attcaggcta tatctttgat tctcctcaga ccgaagacgc gccagagaat
     3721 cagacaaaac agagggtcat tctagcaggc accagtgtag gatcagaagg gagcaccgct
     3781 cgagaagcta agagtggaaa agacgatggc gtctttggag caccacaact ggacgcctac
     3841 aacttcccag gttggacgga tgaggaagta cagtcgtatc ttgctagtgg ttggactgtg
     3901 gatcaactcc agcagaaaca cgcggaagag cacggtgagt gacccggcta tgcggagcgc
     3961 cgagattgct cggaacatcc agcgaggcga ggttgacgaa agcgatattc acgatttaat
     4021 ccaaggcgtt gtgtcacgag atggagccca gtggtccgac gaagaggttg tcgaggtatt
     4081 gcaatcgatt ttcgaacatg gacttgaacc agagaatact ggtcgtttga ctgcgggaat
     4141 gatgcacagt gggaagattc tgaaatggcc agaggaatgg aagcaccttg ttgttgacaa
     4201 acacagtact ggtggcgtag gggacaaggt ctcgattcca ctcgcacccg ctctcgccgc
     4261 ctgcggactc aaggtcccga tgatttccgg aaggggatta gggcacactg gagggacact
     4321 cgacaaactg gaaagtatac cggggttcaa tgttcaactc cacacacaga gcatacagga
     4381 ccaggtagct gaaattggag tcgcaatggt aggacaatct gaggacctcg ttccagctga
     4441 ccgtcggatg tatgcgcttc gtgacgtgac tggtaccgtt
//
LOCUS       DUKB01000021           15119 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_117282, whole genome shotgun sequence.
ACCESSION   DUKB01000021 DUKB01000000
VERSION     DUKB01000021.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 15119)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 15119)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15119
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_117282"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..3212)
                     /locus_tag="HA345_00830"
     CDS             complement(<1..3212)
                     /locus_tag="HA345_00830"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012999.1,HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HIH83930.1"
                     /translation="MVRASSMGVVRSLLLVSLLVTSTTLIAWSPSQPLDEIDDGLNVV
                     GLRSGQGVVDVPEWAIGDTWTYDAFFDVQDLIASGAPGSNVGTLRGTLTKEVIDTTIM
                     MIENQSTIVYVVESTGTFQRNGISIVTDAATVSGDLRVAFESDELVRASDLGQITYNM
                     ELDVDLRNIPFPISLITGSTLDLADITIGTQYSPPKEHYDFPMAVGEYWNTTLTTSTT
                     WSGSVYQNLFELPDDSAEQSRESHGITSVGNPGVGYSGCATSLNATSFNSTSGDITGF
                     RWYCPSAKGEAWWHQEIELGLQIDFKLLTYTPASRDPVISVETAFPAWPLNTDMGAWV
                     NLTDPSTGSPLGNQAVQFRYESTGDYRALTTATNGSAYVEFDTGAWPDPSPTTYDYAS
                     HGVIGWDSSTKSVGVTTMILDENLVEVDLVASASGVSVTRIRGDVTEQLNSVTGFTTI
                     PNDVLEFSIPVRNQGILSAPSTEIEITSPDGSSTRANIPSLPALGEVRVDVQWTVPSD
                     QAIGDSILQFEVDPDSLVTADANRINNADVFNIFVGRLPVADLTQMNSFYTFTTVVLD
                     ASSSDDPDGFTDIYCYFMIEDPLAVDDNDGDPTDGFIERVIYTDTTEDCVVEWSWDDD
                     GEYEIGLSIVDDEGDTTVTNMTVEVLNRAPELVLSSNTDTVEVMGRVTFDAFQHGDID
                     TMNPQAPVDFLWAGNCEEGKVTQVCTVTPMVEGIYTIQATATDDDGALTMAEHSVEVT
                     NIAPWNSTIMAKDANGTEISMDSQMVWHVNEDDPITFTGMAEDSINDLDTLSYEWWPD
                     AEENATWSVLQENDGSSSDFTHAYETHGMHVVAMEAIDDDGLRTRRANGWLMVQNVPP
                     EIQPFGSLLPVAEDQVLSITGEYHDTASDIETLHACWDVDPSMNSDSQGSAEDDCDVE
                     GADLAWSWPDSATAPSMVVFHVTDDDGERVFEMVNITVRNVKPRAMANVTTLGPYAVG
                     DPIEFSADGTTDSSLDLFRLKYRWDFNTAVDFDDDGYSANDIQDEGFNVTHVFDEPGT
                     YIVRLTAFDGDEEDVVDIQITVEDTRLLGVLDIGFNSGSGT"
     gene            complement(3266..4012)
                     /locus_tag="HA345_00835"
     CDS             complement(3266..4012)
                     /locus_tag="HA345_00835"
                     /inference="COORDINATES: protein motif:HMM:NF012572.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008418451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HIH83931.1"
                     /translation="MSDEDRLVVVNVVASTRVAEELDLPEIAIELNCEYEPEQFPGVV
                     YRVTDPRLAILMFRSGRAVCTGGKNEQNIHTGIERMINDLRAADIVTWDLADVKIEVQ
                     NMVATYALHYPEDYDALSKDIDQRMKVVKDPGHKDSNDGGWRAPTPEEVEMDEAESPI
                     QPLPAGEPLAGLPRHLNLNHLTFHLPFDRVEYEPEQFPGLIYRIDYPKVVCLIFGSGK
                     MVITGARHKDEILEAIEFIKDELADLLYED"
     gene            complement(4062..5033)
                     /gene="mvk"
                     /locus_tag="HA345_00840"
     CDS             complement(4062..5033)
                     /gene="mvk"
                     /locus_tag="HA345_00840"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HIH83932.1"
                     /translation="MERVATAPAKAILFGEHAVLYGAPAIAVAVDLRAKVTLNDSDEW
                     RMNGQPLDLSENPHLASLIRWASAEGRPQDIHVVSDIPIASGLGSSAALCASIGVLLE
                     ESHGSKERIARAAHSSEAEAQGGRASPVDTSTVTLGGAVVVSNDQWPGIEHCWDVDLS
                     GPDGDRHWAIHSLSLSPELRSMPLVIGSTGKGSSTAKMVASVAARMHESEFRASMDRL
                     VTCAEDSIHLLLEGDPIPIGEAMNRCHTLLRGIGVSSPEIEDLIEAVLPYSLGAKMTG
                     AGGGGCILALTQDPDSCAEAIRCAGGEAFVTTMGAEGVRIENYSENL"
     gene            5157..6716
                     /locus_tag="HA345_00845"
     CDS             5157..6716
                     /locus_tag="HA345_00845"
                     /inference="COORDINATES: protein motif:HMM:NF024842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HIH83933.1"
                     /translation="MGEDTDFDVIIIGCGMAGMACAAQLLKEGVEGDRILVVDRGEPI
                     GAKNMSGGVLWGRELDDLADIFPNWEMDNPGIERYINHKKIGFLSEDDAFILEGKFAS
                     WDGIGGTKEPSMRTGWSVLRGRTDAWFAEKLEEAGVFIMPGIKIDQLHIEDLDHTSYD
                     PRDLTTPSEDSGKGNAQKWRIDNQPEIAGKVRNGRICGIVQDGEVMTSQVVVIAEGSN
                     SVLTRSYGFDSMIHAQDRHGMLLGVKEVIHLGEDVINSRFGCFAGDEERPPSGLAMEG
                     ALAIYDNMAEKAWEDYPETAGLVPRAGGWLYTNRDTLSIGVVIQLDSLPQGIHTYDML
                     AAYKAHPAIAPLLEGGEVVEYGGHLVPEYGLDRMPTKIVRDGAVVIGDAAGLVYSNGA
                     VIQGQNYSIHSGKLAGKVIAKCVASGNCNSSTLSQYKKDLDASYVMRDLKRFKTTAKF
                     LSDDANYTWVPKFMGTMFNRVVREIGEEKITVEKQAFRLRKEMRRADKKTRKGMGLLN
                     LLRLGRMGRKL"
     gene            6727..7044
                     /locus_tag="HA345_00850"
     CDS             6727..7044
                     /locus_tag="HA345_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018034116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HIH83934.1"
                     /translation="MTGKVAIGLFEYDVKNGLGLIGYNVDEHEHAHIVVETSKCNDCS
                     HMMCVWGCPAQCYNFRDQGLNEMKFQYEDCVECGTCFIMCDQGAVSWNHPRGGFGITY
                     TYG"
     gene            7059..7454
                     /locus_tag="HA345_00855"
     CDS             7059..7454
                     /locus_tag="HA345_00855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83935.1"
                     /translation="MAYKMLGIEMPLMSILVGGILSAWGVAAYVISDMASFTALIPTI
                     MGTPIAVCGSAAAQMPSRRKLFMHIAVIFGLLSALGGLRLPMILMDGDSSGILIISHA
                     LLLVLGGVYTYACVQSFRWARVNGLIDSE"
     gene            complement(7462..8457)
                     /locus_tag="HA345_00860"
     CDS             complement(7462..8457)
                     /locus_tag="HA345_00860"
                     /inference="COORDINATES: protein motif:HMM:NF013255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HIH83936.1"
                     /translation="MNQEYKRILVTGCSGFLGRQVTQELLSRGYFVRGTTRSHEELHH
                     EIMNDFDNHPSLELRCLDLIFDEGWESAMQDIDAVVHTASPFSAYEPKDEQELIKPAR
                     EGTIRVLTHGYEAGIRKFVITSSTAAISGATPTSKNKTYSHENWTDLNSKISAYTKSK
                     TLAEQAAWDFIESHPDSILTTVNPNVILGPLHSGTPGTSLRIIESIMESRYPGFPKIS
                     FAPVDVRDVAWMHAEAIKNPNLNGERLIMATSPITMPQIAAHLKSTGLKVSTLALPNF
                     IVKIMALFIKEARLVSSGLGTTNYYDCSNTIQKSGWKSKSQEEMIISAVDSLNLR"
     gene            8511..10064
                     /locus_tag="HA345_00865"
     CDS             8511..10064
                     /locus_tag="HA345_00865"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HIH83937.1"
                     /translation="MFARIYGEVCYPRNKKHMTLHLYDTRRKEKVPFHPAVPGKVQMY
                     VCGITPYSPSHLGHARCYIAFDLLHRWLEASGYDVDYVQNFTDIDDKIIRTANEEGID
                     FLEVANRNIADYYEVMDALGVLRADYYPRVTEHLEGIISIIETLIEKEHAYTASDGVW
                     FSVASAPEKFGTLTGNTLDAVQAGGSGRLVESGKKDHHDFALWKAAKPDEPAWDSPWG
                     PGRPGWHIECSAMSMHHFGESFDIHGGGFDLRFPHHEAEIFQSECCTGKEPFVGVWMH
                     NGFVRVDGEKMSKSLGNFWTMKDTFDNYDPLALRYALLNAHYRNPIDVSEQLLEDAKT
                     KQRRLSEGYGQALIAKEGGEALEPLPPLPTPDTSSDAYLPKILGIIESLAEEAARALD
                     DDLNSRIALAKVQAGISAIDDTLESDQIDEHDTASFAKFAVDWIEEIAGDILGVLPEP
                     AIAKAIRDPRLDPKRIAVREEVEALLARRGIARHAKDWAAADEIRERLNEMGITVTDT
                     PEGAIWSIE"
     gene            complement(10068..12878)
                     /locus_tag="HA345_00870"
     CDS             complement(10068..12878)
                     /locus_tag="HA345_00870"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013125.1,HMM:NF014081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HIH83938.1"
                     /translation="MTSRSFLRAGFAISLLLLLPMTGVTSANGSQGAYISEFLVSAST
                     ASYDGVDWNCDGSTGSTSDQFVEIHNPESSAIDVQGWVLEVETAGITESYTFTASTID
                     SQSRLVFFRATTMLELSYFEGGTIRIMDASSNEISSATWPAEEYGWDISYTRDVKGEP
                     LQKVNSPTPGWGPSESRPSSGVGAECEPLEGVDHNGSYVLTGSVVTMESQSSVLISGN
                     VLVVNGLIEAVWGDGEPEPGVASGVERIHTGGVIYPGLIDAHNHPHYNAIPIWDHGRG
                     AREVDPNGWNNRYEWRTVNDYKNAITKVENGLNDGGSDGCGLMVDSMKHAEVKSIVGG
                     TTAIQGSTSESEETFTSILARNLEKSNFGQDNIETRVGGSWFPDDYTGSHIKNSKASG
                     NLDAWMIHLAEGIDEPSRAEFDALVNNDLVIDELIIIHGTALTSNEFSRMAAVDASLV
                     WSPMSNLLLYGDTADIAAADDAGVSIHISPDWNPSGAKSVLHEVKIADWWDSNVLGNR
                     FTDFEMAQMITTNAIDQVGWTDYVGRIKAGLAADLLVVDSFHSDPYRNLIEAVDPDVR
                     LVTVGGIAVFGDADLMDQMSDDPEVLSAPGFQKTIDVRFEGVPGGTSSYADISGRLKS
                     CLENLSIGPRPFDPWYTYGDDRYFDVLNRSGTFQHGRNADLWSAYYDITLDSNGNRSN
                     VDTIVAPIDNGQGDTDVTPPVDDGQDDTDNDNSNSNGPSLSENDLPLILPTFGPYGGE
                     QYPSNTTWGKGIHIEECVTDPASSDDGRVRGCGAIVILMSRSQGCFVENWPDLGATDA
                     DIVYSSDCPEDSIWTQPHASLSESASEGDWPVSRLDPSYNLGSAITFPGRTCDDSVVA
                     QALVLGETPPERGDDSRISEWSCRDAANWIVPILDDNNPDVLIEESVSSVTEEAWFWA
                     VLILALLVLTFSAVTITRLLRE"
     gene            12982..14430
                     /locus_tag="HA345_00875"
     CDS             12982..14430
                     /locus_tag="HA345_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83939.1"
                     /translation="MRDGSTTKIVASVATVLILLLPGCFGENEEIYEGNDWAKGFAYI
                     DDPAEFTGEDRIRPFNVSHPDPSLNDTWGNSSWAVFGNPEGGNCCEHYLAATEWGWIL
                     NFGGEYPTWSEDRGHTWQEWQPPVVQNLNCRTPKLTLPGQEGLGEGSIVQTTTGDIIA
                     MGWFPYPSASGGDQFYAFFWDADEEDWTWCFNRFTEPFYDRSWQMEIVGPIDANAPWG
                     SGEWASLVISNFWHQSSNRGGQMSTDGLNYYYFEFPDRDEQLDTYEVDLTSVELSASW
                     DYTKPHKEMRGFPVPSGGAYFPSFFSDGGDAFLDTSLNWWRATTLGGESLPSEYCAFD
                     SSSHLHCILQTGTTFLHTVSDDGGETWTNQTYNLSSVAEEIEEWEFHANGVHDLFVLN
                     VRYQSSAGPDVDVAWHVRDYSEDLAPDSMTFIGLGDLDATSGAGQDIRFDFASMTILP
                     DGGSVIAYHDSSDPDPLFGLELFLPQEYSVNQ"
     gene            complement(14420..>15119)
                     /locus_tag="HA345_00880"
     CDS             complement(14420..>15119)
                     /locus_tag="HA345_00880"
                     /inference="COORDINATES: protein motif:HMM:NF012700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83940.1"
                     /translation="PEIVSDGSGFRLDEARHLLLDVEPTPITYGLGSVAADEDLDRLA
                     LLTGANSGGKTTLLETIAMCVLLTHAGLPIPATHGRVSLVDELHMLAKVSGTQSAGAL
                     ERTLIRLADVFTSPSVKLVLADELEAITEPGAAARILSGLLDAAMSNPSSSVVLVTHI
                     GDQIQSRSGDDLRIDGIEARGLDENLELIVDRTPKRGLLARSTPELIVRRLAARSEGP
                     ASDLFNRLAERFTD"
BASE COUNT         4151 a         3703 c         3507 g         3758 t
ORIGIN      
        1 gttccagatc ctgaattgaa cccaatatca agcaccccga ggagtctagt atcctcaacc
       61 gtaatctgaa tgtcaacaac atcctcttca tccccatcaa aggcagtcaa tcgaacaatg
      121 tatgttccag gctcatcgaa tacgtgagtg acattgaacc cctcatcttg gatatcgtta
      181 gcagagtaac catcatcatc aaaatcgact gcagtgttga agtcccaacg atacttgagc
      241 ctgaaaaggt ctagggatga atcggtagta ccatctgcac taaactcgat tgggtctccc
      301 acagcgtagg ggccaagtgt agtgacattc gccattgcac gaggcttgac attacgaaca
      361 gtgatgttaa ccatctcaaa cacgcgttca ccatcatcat cggttacatg aaagacgacc
      421 atggatgggg ctgtagccga atctggccaa gaccacgcaa ggtccgcacc ctcaacatca
      481 caatcatctt ctgcagaacc ctgtgaatca gaattcatgg acggatcgac atcccaacat
      541 gcatgtaatg tctcaatatc tgaggcagta tcatgatatt cgcctgtaat actcagtact
      601 tgatcctcag cgactggtaa caaggaccca aacggctgaa tctcaggcgg cacattctga
      661 accatcaacc atccatttgc tctccgagtt cggaggccat catcatcgat ggcttccatt
      721 gcaacgacat gcatgccatg ggtttcgtaa gcatgggtaa agtcggagga ggatccatca
      781 ttctcttgca agacggacca agtagcattt tcctcggcat ctggccacca ctcatacgac
      841 agagtatcca aatcattgat tgaatcttca gccattccag tgaaggtgat cgggtcatct
      901 tcgtttacat gccaaaccat ctgtgaatcc atcgaaattt cggtaccatt agcatccttg
      961 gccataatag tcgaattcca aggtgcgata ttggttactt ccaccgaatg ctcggccata
     1021 gtgagggctc catcgtcatc tgttgcagtt gcttgaattg tgtatattcc ttcaaccata
     1081 ggagtcacag tgcacacctg agtgactttt ccttcttcac agttacccgc ccataggaaa
     1141 tccacaggag cttgtggatt cattgtatca atatcgccat gctggaacgc atcaaaagtg
     1201 accctaccca ttacttctac cgtatcagta ttcgatgaaa gaaccaattc aggtgcacga
     1261 ttgagtacct ctactgtcat gttagtcact gttgtatcgc cctcatcatc tacaatgctc
     1321 aatccaattt cgtattcgcc atcatcatcc catgaccatt caacaacaca atcctctgtc
     1381 gtatcagtat agatcactcg ctcaatgaaa ccatccgtag gatcaccatc attatcgtcg
     1441 actgcaagag gatcttcaat cataaaataa caatatatgt cagtaaaacc atctgggtca
     1501 tcggaagagg atgcatcaag tacaacagtt gtaaatgtgt agaaactatt catctgagtc
     1561 aaatctgcaa caggaagtcg accaacgaaa atattgaaca catctgcatt attgattctg
     1621 tttgcatcag ctgtaaccaa agaatcaggg tctacctcaa attgaagaat agaatcgcca
     1681 atcgcttgat cagacgggac tgtccattga acatctactc taacctcgcc taatgcaggt
     1741 aaactaggga tgtttgctct ggttgaactt ccatcaggag aagtaatttc gatttctgta
     1801 gagggagctg aaagaattcc ttgattacgt acaggaattg aaaattctaa cacatcatta
     1861 ggaattgtag taaatcctgt aactgaattt aattgttcag tcacatctcc tcgtattcta
     1921 gtaacagaaa caccagatgc tgaagctaca agatccactt ctactaaatt ttcatctaag
     1981 atcatggttg tgactccgac agatttggtt gaagaatccc aacctatcac tccatgactg
     2041 gcatagtcat atgttgtagg agatggatct ggccaagcac ctgtatcaaa ttcaacatat
     2101 gcactaccgt tagtagcagt tgtaagagcg cggtaatctc ctgtagattc ataccggaat
     2161 tggactgcct gattccccaa aggagaccca gtggaagggt cggttaaatt cacccatgca
     2221 cccatatctg tgtttagagg ccatgcaggg aatgcggttt caactgaaat aactggatcc
     2281 cgtgaagcag gagtataggt caataatttg aaatcaattt gaagacccaa ttcaatttct
     2341 tgatgccacc aagcttctcc tttagcagaa gggcaatacc aacggaatcc agtaatatct
     2401 ccagaagtag aattgaatga ggttgcatta agagacgttg cacatccact ataacctact
     2461 cctgggtttc caacggatgt aattccgtga gattccctac tttgctctgc agaatcgtct
     2521 ggtaattcga agagattttg gtatactgaa ccagaccaag tggtgctagt cgtcagagtt
     2581 gtattccaat attctccaac agccatagga aagtcataat gttccttggg tggcgaatac
     2641 tgggttccaa tagtaatatc agctaaatct agagttgaac ctgttatgag actaatgggg
     2701 aaagggatat tgcgcaaatc aacatcgagt tccatattat aggttatttg accaaggtct
     2761 gaggctctca ccaattcatc ggattcaaat gctactctga gatcacctga aacagtagct
     2821 gcatcggtaa caatagaaat tccatttctc tggaaagttc ctgtagattc gactacataa
     2881 acaatggtag attggttctc aatcatcatt attgtagtat caattacttc cttcgttaaa
     2941 gtacctcgta aggtgcccac atttgaccct ggtgcaccag aagcaatcaa gtcctgaaca
     3001 tcgaaaaatg catcatatgt ccaagtatca ccaatagccc actctggtac atcaacgacg
     3061 ccttgacccg atcgaagccc tactacgttg agaccgtcat cgatttcatc tagcggttgg
     3121 gagggactcc aagcaatgag agttgttgaa gttacgagta ggctcactag gagaagcgag
     3181 cggacgacac ccatcgatga tgcacggacc atgcaccaac agcctcgcgg ctgtgtatca
     3241 aacatgcgcc tgctcagagt gcagttcaat cttcgtaaag gagatctgcg agctcgtcct
     3301 tgatgaactc gattgcttcc agaatctcat ccttatgacg cgcccccgta atcaccatct
     3361 tgccacttcc gaagatgaga caaacgacct ttgggtaatc gattctgtag attagacccg
     3421 ggaattgctc gggctcatac tcgacccgat cgaagggcaa gtggaaggtg aggtgattga
     3481 ggtttagatg gcgaggtagt cctgccagag gctcaccagc aggaagtggt tgaatcggag
     3541 attctgcttc atccatctcg acctcttcag gagtaggtgc gcgccatccg ccgtcgttgg
     3601 aatccttgtg gcccgggtcc ttgacgacct tcatgcgctg atcgatatcc ttggaaagtg
     3661 catcgtaatc ctcaggatag tgaagagcgt aggtagcaac catattctga acttcaatct
     3721 tcacatctgc gagatcccaa gtcacaatgt ctgctgcgcg caaatcgtta atcatgcgct
     3781 caataccagt gtgaatattc tgctcgttct tccctccagt gcacactgca cgtcctgaac
     3841 ggaacatgag aattgcaagt cgaggatctg tcacgcgata gacaacacca gggaattgct
     3901 caggctcata ctcacaattg agttcgattg cgatctcagg gagatcgagt tcctcagcta
     3961 cacgggtgct cgcaacgaca ttcacaacaa caaggcgatc ttcatcactc atagagttgc
     4021 gactttatca acagtatata aacagaagtg caataccatc gtcacagatt ttcgctgtaa
     4081 ttctcgattc ggacaccttc tgcacccatt gttgtgacaa aggcctcgcc accagcacat
     4141 cggatagcct cggcgcaaga atcagggtct tgtgtcaatg caagaataca tcctccaccg
     4201 ccggctcccg tcatcttcgc acctaggctg taaggtaata cggcttcaat caaatcctca
     4261 atctccggag atgatactcc aattccacgt aagagggtat gacatctatt catggcctca
     4321 ccgataggaa ttggatcccc ctccaacagt aggtgaattg aatcttcagc acaagtgacc
     4381 aaacggtcca tagatgcgcg aaactcactc tcgtgcatac gagcagccac actagcgacc
     4441 atcttcgccg tagatgaccc ctttccagta gaaccgataa caagaggcat ggaccttaat
     4501 tcaggggaca aagaaagcga atggatagcc cagtgacggt ccccgtctgg gccactcaaa
     4561 tcgacatccc agcagtgttc aatccctggc cattgatcat tgctaacaac tacggcacct
     4621 ccaagagtaa ctgtgcttgt atccactggg ctagctctac cgccctgcgc ttcagcttcc
     4681 gaactatgtg cggctctagc aatacgttcc ttcgagccat gactctcttc caaaagtacg
     4741 ccaatggaag cacatagagc cgcagaagag cctagcccag aagcgattgg gatatcactt
     4801 acgacatgga tatcttgcgg acgtccctcc gccgaagccc aacgaataag agaggccaga
     4861 tgtggattct ctgagaggtc caaaggttgc ccattcattc tccattcatc agagtcattc
     4921 aaggtcacct tggcgcgtaa atccactgcc acagcgattg ctggagcacc gtaaagaaca
     4981 gcatgttcac caaacaagat tgccttagct ggtgcagtag cgaccctctc catcggaccg
     5041 acttcgaagg taggggactt atccgttcct gaatatagag tcaaaacttc gtttgttacg
     5101 agtagcaggg agacattcaa agacaggttt cagttggtta gtgatggggg aggtacatgg
     5161 gcgaagatac tgacttcgat gtaatcatca taggatgtgg gatggccggc atggcctgcg
     5221 ctgcacaact actgaaagaa ggcgtcgagg gtgaccgaat tcttgtcgtt gaccgtggag
     5281 agcccatagg tgctaagaac atgtcaggag gagttctgtg gggtcgagaa ctcgacgact
     5341 tagcggatat ctttccaaat tgggagatgg ataatccggg catcgagcgc tacattaacc
     5401 acaaaaaaat tggatttctt tctgaagatg atgcattcat ccttgaaggc aagttcgctt
     5461 cttgggacgg catcgggggc accaaagagc cctcaatgcg cacaggttgg agtgtacttc
     5521 gtggccgtac tgatgcgtgg ttcgctgaaa aacttgagga ggcaggtgta ttcattatgc
     5581 caggcatcaa gattgaccaa ctacacatcg aggatttaga tcacacatcc tatgacccgc
     5641 gagacctcac aactccatcc gaagactctg gcaagggtaa cgcacagaaa tggcgtattg
     5701 acaatcaacc ggaaattgct ggaaaagtaa ggaatggacg tatttgcggt attgtccaag
     5761 atggcgaggt aatgactagt caagtcgttg ttatcgcaga aggtagcaac tccgtcctca
     5821 ctcgatcata tggtttcgac tccatgattc acgctcaaga tcgccatggt atgcttctcg
     5881 gcgtgaaaga ggtcatacac ctcggggaag atgtcatcaa cagccgattc ggttgcttcg
     5941 ctggtgacga agaacgcccc cccagtggcc ttgcgatgga aggggcactc gcgatttatg
     6001 acaacatggc tgagaaggca tgggaagatt atccggaaac tgccggccta gtcccacgtg
     6061 ctggcggctg gctctataca aaccgggaca ccttatcgat tggagtcgtg attcaacttg
     6121 acagcctccc gcagggcatc cacacttacg acatgctcgc agcttacaag gcacatccgg
     6181 caattgcacc cctcctagaa ggaggagaag tcgtcgaata tggaggacat cttgtgccgg
     6241 agtatggatt agatcgaatg ccgacaaaga tcgtccgaga tggtgcagtt gttattggtg
     6301 atgcagccgg ccttgtttac tcgaacggcg ccgtaatcca aggacagaac tattcgattc
     6361 attcgggtaa attagccggt aaagtaatcg cgaaatgtgt tgcttcaggg aactgtaatt
     6421 catccactct cagccagtac aagaaggacc tcgatgcatc ctatgtaatg cgcgacctca
     6481 agcgattcaa gaccacagca aaattcctct ccgacgatgc aaactatact tgggtaccga
     6541 aattcatggg caccatgttc aaccgagtgg tccgtgaaat cggtgaggaa aaaattaccg
     6601 ttgagaagca agcattcaga ctccgtaagg agatgcgccg cgcagataag aagaccagga
     6661 aaggaatggg gctcctaaat cttctaagac tagggcgcat gggaagaaag ttatgaggtg
     6721 aatctaatga ccggtaaagt agcgattgga ttgtttgagt atgatgtgaa aaacggcctt
     6781 gggctaattg gttacaacgt agatgaacat gagcacgccc atattgtagt tgagacatca
     6841 aagtgtaacg actgtagcca tatgatgtgc gtctggggat gccctgcaca gtgctacaac
     6901 ttccgcgacc aaggactgaa cgaaatgaag tttcaatacg aggactgtgt tgaatgtgga
     6961 acttgcttca tcatgtgtga ccaaggcgca gtctcatgga accatccccg tggtgggttc
     7021 ggaataactt acacctacgg ttgagggaga tgatacagat ggcgtacaag atgttaggaa
     7081 tagaaatgcc actaatgtcg atattggtcg gagggatact ctccgcttgg ggagttgcag
     7141 cgtatgtgat ctccgatatg gccagtttca cagccttgat tcctactatc atgggcacac
     7201 caattgcagt ttgcgggtct gcagccgcac agatgccttc acgtcgtaaa ctgttcatgc
     7261 acatcgctgt aatctttgga ctcctatccg cattaggtgg actgcgattg ccgatgattc
     7321 tgatggatgg agattcctct ggtatcttaa tcatctctca cgcgctactg ctagtccttg
     7381 gtggagttta cacatatgca tgcgttcaat cctttagatg ggcacgcgta aatggattaa
     7441 ttgattccga ataacctcaa attatcgaag gttcaatgaa tcgactgcag aaattatcat
     7501 ctcttcttga gatttagatt tccatcctga cttttggata gtgtttgaac aatcataata
     7561 gttagttgta ccaagtccac tagaaactaa acgagcctct ttgatgaaaa gcgccatgat
     7621 ttttacaata aaattgggaa gagcaagagt agacactttc aaaccagtgg atttgagatg
     7681 tgctgcaatt tgaggcattg tgattggaga ggttgccata atcaatcgtt ctccatttag
     7741 atttggattc ttaattgctt cagcatgcat ccaagcaaca tcacgaacat ccactggagc
     7801 aaaactgatt tttgggaaac caggataccg actctccatt attgattcaa ttattctcaa
     7861 tgaggtacca ggtgtcccac tatgcaaggg ccccaaaatc acatttgggt ttacagttgt
     7921 aagtatggaa tcaggatgtg actcgataaa gtcccatgcg gcttgctcag ctaaagtttt
     7981 acttttagtg taagccgaaa ttttactatt tagatcagtc cagttttcat gagaatacgt
     8041 cttgttttta cttgttggag tagcaccgga aatagcagca gtagatgagg taatcacaaa
     8101 tttacgaatc cctgcttcat atccatgagt caaaacacga attgttcctt ctctggctgg
     8161 cttgatcaat tcctgctcat cttttggttc ataagcagaa aatggagaag cagtatggac
     8221 gacggcatca atatcttgca ttgccgactc ccaaccttca tcgaaaatta aatcgagaca
     8281 gcggagttca agtgaaggat gattatcaaa atcattcata atttcatgat gtaattcttc
     8341 gtgacttcga gtagtacctc gaacaaaata tcctcgagaa agtaattctt gagtaacctg
     8401 tcgaccaaga aaaccagagc atcctgtcac caatattcgc ttatattcct gattcatgat
     8461 tttgcgtgtt ttttttaatg tttgaatttt tgttactgtt tattctaagg atgttcgcac
     8521 gcatttatgg tgaagtgtgc tacccaagga acaagaagca catgacccta cacctctacg
     8581 atactcgcag gaaagagaag gttcctttcc atcctgccgt tccgggtaag gttcagatgt
     8641 atgtttgcgg aataacaccc tattcgccct cacaccttgg gcatgctcga tgctacatcg
     8701 cgttcgatct tcttcaccga tggttggagg catccggata cgatgtcgac tatgtgcaaa
     8761 acttcactga tatcgatgac aaaataatca ggactgccaa tgaggaggga atcgatttcc
     8821 ttgaagttgc aaaccgaaac attgcagatt actatgaggt gatggatgca cttggtgttc
     8881 ttcgagcaga ctattaccct cgcgtcacag aacatctcga aggcatcatc tctataatcg
     8941 agacgctgat cgaaaaagag catgcttaca ccgcctcgga tggggtatgg ttctccgtcg
     9001 cttccgcgcc tgaaaaattc ggtacattga ctggaaatac actggatgct gtccaagcag
     9061 gaggatcggg gagactcgtg gagtccggga aaaaagacca ccatgacttc gccctctgga
     9121 aggctgcaaa accagatgag ccggcatggg attccccctg gggcccgggg cgtcccggtt
     9181 ggcacatcga atgcagtgca atgagtatgc atcatttcgg agaatccttc gacatacatg
     9241 gtggaggatt tgatctccga ttccctcatc atgaggccga gattttccaa tccgagtgct
     9301 gcactggaaa ggagcctttc gtcggcgtat ggatgcacaa tggattcgta agggtagatg
     9361 gggagaagat gagcaagagt ctcggcaact tctggacgat gaaagatacg ttcgacaact
     9421 acgaccccct cgccctccga tatgcccttc taaatgccca ttatagaaat ccaatcgatg
     9481 taagcgaaca attgctagaa gatgcaaaga cgaaacagcg acgtctatcc gaaggatacg
     9541 gacaagctct catcgcgaaa gagggtgggg aagctctcga gccccttcct ccacttccga
     9601 ccccggatac atcctcagat gcctacctcc caaagatact gggaataatc gaatcgcttg
     9661 cagaggaggc ggcccgagca ctcgatgacg acctcaacag tcgaatcgct cttgctaagg
     9721 tccaagcagg aattagtgcg attgatgata cactggaatc agatcaaatt gacgagcatg
     9781 atactgcctc cttcgccaag ttcgctgtcg attggattga agagattgca ggtgacatcc
     9841 taggagttct tcctgaacct gcaattgcga aggctatacg cgaccctaga cttgatccca
     9901 agaggattgc tgttagagaa gaggtagaag ctcttctggc tcgacgtggt atcgcccgtc
     9961 atgccaaaga ttgggctgct gcagatgaga ttcgcgaacg ccttaacgaa atggggatta
    10021 cagttacgga tactcctgaa ggggccatct ggtccatcga ataatgacta ttctcgcaaa
    10081 agccgagtaa tcgtcacggc agagaaggtt agaaccaaca gagctaggat aagaacagcc
    10141 cagaaccaag cctcttcggt cacagatgag acactttcct ctatcagtac gtctggatta
    10201 ttatcatcca agatgggtac aatccaattg gcagcatccc tgcaagacca ttcgctaatc
    10261 cgtgaatcat cccctcgctc tggtggagtt tcaccaagga caagtgcttg agcaacaact
    10321 gaatcatcac atgtacgtcc aggaaacgta atcgcactcc ccagattgta actcggatct
    10381 aatcgactta cgggccaatc accctccgag gctgattcgc taagacttgc atgaggttgc
    10441 gtccaaatgg aatcctcggg acaatcacta ctgtacacaa tatcggcatc cgttgcaccc
    10501 aggtctggcc aattttcaac gaagcaaccc tgtgatctgg acatcaaaat cacgattgcg
    10561 ccacagccac ggactcggcc atcatcagat gatgccggat cagtcacaca ctcttcgata
    10621 tggattcctt tgccccacgt agtattggaa ggatactgtt caccaccata tgggccgaaa
    10681 gtcggcagga ttagtggaag atcattctca cttaagctag gcccatttga attgctattg
    10741 tcattatctg tatcatcctg tccgtcgtca acaggaggtg tgacatctgt gtcgccctgt
    10801 ccattgtcaa taggagctac aatagtgtca acattggaac ggttcccatt cgaatccaat
    10861 gtaatatcgt agtatgcaga ccacaagtca gcattacggc catgttggaa tgtaccggat
    10921 ctattcagga catcgaagta acgatcgtcg ccataggtat accacggatc gaatggtcga
    10981 ggcccaatag agaggttctc aagacaactc ttcagacgcc cagaaatatc agcatatgac
    11041 gatgtccccc ctggaactcc ttcgaatcta acatcaatcg tcttctggaa accaggagcg
    11101 gacaatacct cggggtcgtc tgacatttgg tccatcaaat ctgcatcacc aaatacagca
    11161 attcctccga ctgtgaccag acgtacatcg gggtcaacgg cctcaatgag atttcggtat
    11221 ggatcagaat ggaaggaatc cactactagc aaatcggcgg cgagtccagc cttaatccga
    11281 ccgacataat cagtccaacc cacctgatca attgcgttcg tagtaatcat ctgcgccatt
    11341 tcgaaatcag taaatcgatt gccaaggacg ttggagtccc accaatctgc aatcttaacc
    11401 tcatggagga cactcttggc tcctgatgga ttccaatctg gagatatgtg gattgagacg
    11461 cctgcgtcgt ctgccgcagc aatatccgct gtatcaccat agagaaggag gttcgacatt
    11521 ggcgaccaaa ctaagctggc atctacggca gccattcgtg aaaactcgtt tgatgtaagc
    11581 gcagtaccat ggatgatgat taactcgtca atcacaagat cgttgtttac aagtgcatcg
    11641 aattctgcac gtgatggctc atcaattccc tctgcaagat gaatcatcca cgcatcgaga
    11701 tttccactag cctttgaatt cttgatgtga gagccagtgt agtcatcagg gaaccaggat
    11761 ccacctacac gggtctcgat gttatcttgt ccaaagttcg atttctcaag atttcttgca
    11821 aggatagatg tgaatgtctc ctcactctcc gatgtagagc cctgaatcgc tgttgtgcca
    11881 ccaactatgg atttgacttc agcgtgcttc atggaatcta ccatgagacc gcagccgtcg
    11941 gaaccaccat cattcaaacc gttctcgacc ttcgtgattg cattcttgta atcattcaca
    12001 gtccgccatt cgtatcgatt gttccaaccg tttgggtcaa cctctcgtgc gcctcggcca
    12061 tggtcccata tcggaatggc attgtaatga ggatggttgt gagcatcaat cagtccagga
    12121 tagatgacgc caccggtatg tatgcgctca acacctgatg ccacaccggg ttcaggctcg
    12181 ccatcccccc atacggcctc aataagcccg ttgactacga ggacattccc cgaaatgagg
    12241 acactagatt gggattccat ggtaacgacc gaacccgtca gtacgtacga accgttgtga
    12301 tctacgccct ccagaggctc acactcagcg cctacacctg atgaaggccg ggattcactc
    12361 ggaccccatc ccggtgtagg tgagttgacc ttctgcaagg gttcaccctt gacatctcga
    12421 gtgtaggata tgtcccaacc atactcctct gctggccaag ttgcagaaga tatctcgttg
    12481 ctagatgcat ccatgattct gattgtgccg ccttcaaagt aagaaagttc gagcatagtg
    12541 gtcgcacgga aaaacacgag ccgcgactgg gagtctatcg tagaggcggt gaaagtgtaa
    12601 gattcagtga taccagcggt ctcaacctca aggacccagc cttgaacatc aattgcagat
    12661 gattcgggat tatgaatttc cacgaactga tcactggtgg aacccgtcga accatcacaa
    12721 ttccagtcaa cgccatcata actagcagtg ctcgccgaaa caaggaactc cgaaatgtac
    12781 gcaccctgag aaccattcgc acttgtcaca ccagtcattg gaaggaggag taagagggaa
    12841 atggcgaatc cagcacgaag gaaactacgg ctcgtcacat tgcgaggttc aggcgcgaag
    12901 aacttgaacc ctatcctttg gcactcatga tgacaatagt gctccgacag ggacaaaagc
    12961 actcacctca cccacaatag tatgagggat ggttcaacaa ccaagattgt tgcatcagtt
    13021 gcaactgtcc tgattcttct gcttcccggt tgcttcggcg aaaatgaaga aatctacgag
    13081 gggaatgatt gggcgaaagg cttcgcttac atcgatgacc cggcagaatt cactggtgaa
    13141 gatcgcatac gcccgttcaa cgtaagtcac cctgatccat ccttgaacga tacatggggc
    13201 aattcatctt gggctgtatt cgggaatcca gaaggaggaa actgctgtga acactatctc
    13261 gcagcgactg aatggggttg gattctgaac tttggtggag aatatcccac atggtccgag
    13321 gatcgaggac atacttggca agaatggcag ccccccgttg tccagaacct gaactgccga
    13381 acaccaaaac tgacgctacc aggacaggaa ggcctcggcg aaggaagtat cgtgcagaca
    13441 acaactggag acatcattgc gatggggtgg ttcccttacc cctctgcctc gggtggagac
    13501 caattctatg ccttcttctg ggatgcagat gaggaggact ggacatggtg cttcaaccga
    13561 ttcactgaac ccttctatga tcgatcgtgg cagatggaaa tcgttggtcc gattgacgca
    13621 aatgcaccat ggggttcggg agaatgggct agtctcgtca tctcgaactt ctggcatcaa
    13681 tcttccaatc gaggagggca aatgtcaact gacggtctga actactacta cttcgaattc
    13741 cctgaccgcg atgagcaact cgacacctac gaagttgatc tgacctctgt ggaactctcc
    13801 gcttcatggg attacaccaa gccacacaag gaaatgcgag ggtttcccgt tccctcggga
    13861 ggagcatact tcccgagttt cttctctgat gggggggatg cttttctcga tacaagccta
    13921 aactggtgga gggccaccac tctaggtgga gaaagcctac caagtgaata ctgcgcattc
    13981 gattcgagtt cgcacctaca ctgtatccta cagacaggta cgacttttct gcatactgta
    14041 tctgatgatg gaggggaaac ctggacaaat cagacataca acctcagcag cgttgctgaa
    14101 gaaatagagg agtgggagtt ccatgctaat ggagtccacg acctcttcgt actcaatgtt
    14161 cgataccaga gttctgcagg ccctgatgta gatgtcgcgt ggcatgtacg tgattactct
    14221 gaggacctcg ctccagattc tatgacattc attggattag gtgacctcga tgcaacatct
    14281 ggtgccgggc aagacattcg attcgatttt gcaagcatga caattctccc cgatggcggt
    14341 tcagttattg cctatcacga ctcttctgat ccggatccgt tattcggact tgagttattc
    14401 cttccgcaag aatactcagt caatcagtga atcgttcagc tagtcggtta aacagatccg
    14461 aggctggacc ttccgaccgc gctgccaatc tcctaacaat cagttcagga gttgagcgcg
    14521 ctagtaagcc gcgctttgga gtacgatcaa caatcaattc tagattctca tctaatcctc
    14581 tagcctcaat gccatcaatc ctcaaatcat cacctgaacg cgattggatt tgatccccaa
    14641 tgtgggtaac gagtacgacg gaactagagg gattggacat tgcagcatcc aatagaccag
    14701 atagtattcg tgcagcagca ccaggttcgg taattgcttc taactcatca gcgagaacca
    14761 acttgactga tggcgatgtg aaaacgtctg caagacgaat caaagtcctc tcaagtgcac
    14821 ctgccgactg ggtaccactg accttggcaa gcatgtgaag ttcgtccacg agtgatacgc
    14881 gaccgtgagt tgctggaatt ggcaaaccag catgagtgag aagaacacac atcgctattg
    14941 tctccagcaa agttgtctta ccacccgagt tcgctccagt caataatgca agacggtcta
    15001 gatcttcatc tgctgcaacc gaacccaaac cataggtgat aggagtaggt tcgacatcga
    15061 gaagaagatg tcttgcctcg tcgagccgga aaccagaacc gtctgataca atctcaggc
//
LOCUS       DUKB01000022            3084 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_465307, whole genome shotgun sequence.
ACCESSION   DUKB01000022 DUKB01000000
VERSION     DUKB01000022.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3084)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3084)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_465307"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            100..>506
                     /locus_tag="HA345_00885"
     CDS             100..>506
                     /locus_tag="HA345_00885"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF012653.1"
                     /note="catalyzes the formation of S-adenosylmethionine
                     from methionine and ATP; methionine adenosyltransferase;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HIH83941.1"
                     /translation="MKDGHWVFTSESVSSGHPDKLCDAISDAILDACLTVDPNAKVAV
                     ETLVKGEAARSHIVLAGEVTISNGGDVPDFEAVARDAAVAIGYTDHEIGMDAGSHETC
                     KVQVLITSQSAHINRGVVQDIDDQGAGDQGLMFG"
     assembly_gap    507..828
                     /estimated_length=322
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <829..1675
                     /locus_tag="HA345_00890"
     CDS             <829..1675
                     /locus_tag="HA345_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015360219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methionine adenosyltransferase domain-containing
                     protein"
                     /protein_id="HIH83942.1"
                     /translation="FGYACDETEAFHGHKGRWMPLAIALSQGLTRALTDRRVDGTLPW
                     SRPDGKSQVTVEHDSDGRPVRCSHIVIAIQHRDMIAEYGTEGAEQAYIMDQIRAHVID
                     PVIPVELIDNATEITVNGTGRFVDPGGPYADAGLTGRKIIVDTYGGRGRHGGGAFSGK
                     DPSKVDRSAAYAARWAAKHVVAAGLARECEIQLAYAIGIAAPVGIRVDTFGTGGIDDE
                     SIARLVGQYFSFRPGHIIRDLALRNPIYSPTSAGGHFGREPVDGMFTWEALDDARVAA
                     MKDFL"
     gene            1738..>3084
                     /locus_tag="HA345_00895"
     CDS             1738..>3084
                     /locus_tag="HA345_00895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83943.1"
                     /translation="MRRSPLLACVLLLMASCTPLIGTVTADSSILLDLNQDLVVMTPG
                     QSSNVTLSVENNASSIFDFTIELGDSTAGPEWVVNLTATSLPQVYPYSTDSLDIVVSL
                     SAGANSTDSGVQWIWVNRTGASSAIELYLSVGTMHLPDIDATGAGVNGLVSTEGNTSL
                     VIPIEVSNFGSVQDTILLSAGVEPDLGGFWVNHSANSTGSGAGNETGNETGNETGNET
                     NNSTSLGIDNLLLFGNSYTQQNSLDVILEDLGVNDSVARSSGGLTLDNHWNNVNTSAN
                     SWNTTLRDSSVDWDYVVLQDQSQIPGFYRTNANWIDSRDAAINLADAIEDESSEVLLM
                     MTWGRRNGDATNPTIYGNFTQMQDRLEAGYIDYRDNITAQGHQAWIAPVGLAFAHIHD
                     GIVANGSNPLVSGATFSALYSPDGSHPSLAGSYLAALVITATISGQTTVGSNDSVSL"
BASE COUNT          629 a          673 c          737 g          723 t
ORIGIN      
        1 cgggggatgg acttcaaccg ctcggtggct gttaggtatg gttcagaaat caatcaatct
       61 aacagttcgg ttgaaaagag gagcctgaat ccgtgacgca tgaaggatgg tcattgggtc
      121 ttcacatcgg agtcggttag ttcgggtcat ccggacaaac tctgtgatgc gatctcagat
      181 gcaatcctcg atgcctgttt gactgttgac ccaaatgcaa aggtcgctgt tgagactctc
      241 gttaagggtg aagccgcacg ttctcacata gttctcgcag gagaggtcac aatttcgaat
      301 gggggggatg tccctgactt cgaagctgta gctcgtgacg cagcagtagc aattggctac
      361 acagatcatg aaattggtat ggatgcgggt tctcatgaga cctgtaaggt acaagtccta
      421 atcacgagcc agtctgctca catcaatcgt ggcgtggtac aggatatcga tgaccaaggt
      481 gcaggcgatc agggtctaat gtttggnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnngt ttggttatgc
      841 ctgtgatgag accgaagcgt tccatggtca caagggacga tggatgcctc ttgcgattgc
      901 gctatcccag ggtttgactc gagcactcac cgatcgtcgt gtcgatggta cgttgccttg
      961 gtctcgcccc gatgggaagt ctcaggttac ggttgaacac gattcagatg ggcgtcctgt
     1021 aagatgttct cacattgtca tcgcaatcca gcatcgtgac atgattgcgg agtatggtac
     1081 tgaaggcgcc gaacaggcat acatcatgga tcaaatacgg gcgcatgtga ttgatccagt
     1141 tattcctgtg gaacttattg acaacgcgac cgagataact gtcaacggta ctggccgatt
     1201 tgttgatcca ggtggccctt atgctgatgc tggattgact ggccgtaaaa tcatagtcga
     1261 cacttatggc ggccgaggtc gccatggtgg cggggctttc tctggcaagg atccatccaa
     1321 agtcgatcgg tcagcagctt acgctgcacg ttgggcagcc aaacatgtcg ttgctgcggg
     1381 actagctcgg gaatgtgaaa tccaactcgc ttatgccatt ggtatagcgg ccccagtagg
     1441 aattcgggtt gatacctttg gtaccggtgg aatagatgat gagtcgattg ctcgccttgt
     1501 gggccagtac ttctcattcc gtccaggtca cataattcgt gatttggcac tccgtaaccc
     1561 catctactcg cccacctctg caggtggtca tttcggtcgc gaacctgtag atggcatgtt
     1621 cacatgggaa gcgcttgatg acgcacgtgt cgccgcaatg aaggacttcc tctgaacgct
     1681 gttagtattg cccggcctcg cgtggacttc atagcgcaag cgacggtccc ttctctaatg
     1741 cgccgcagcc cgttgctagc ctgtgtgctc ttgctcatgg cttcatgcac gccgttgatt
     1801 ggcacggtaa ccgccgattc cagcatcctt cttgacctca atcaggacct cgttgtcatg
     1861 acaccgggcc agtcttcgaa cgtcacactt agcgtcgaga ataatgcaag ttcaatcttt
     1921 gatttcacca tcgaattagg cgattctact gctggtccgg aatgggtggt taacttaacg
     1981 gctaccagtc taccgcaagt gtacccttac agcactgact ccctcgacat cgttgtttca
     2041 ctgagtgcag gtgcgaattc tactgattca ggtgtccagt ggatctgggt aaatcggaca
     2101 ggtgcctcct ctgctatcga actctatctc tcagttggta ctatgcatct tcctgatatc
     2161 gatgctactg gagccggcgt caatggtcta gtgagtactg agggtaatac ctctctagtc
     2221 ataccaatcg aggtgagcaa tttcggttcg gttcaggaca caattctact tagtgctggg
     2281 gtggaaccgg atctcggcgg attctgggtg aatcatagtg caaattcaac gggtagtggg
     2341 gcgggaaatg aaactggtaa tgaaaccgga aatgaaactg gtaatgagac aaacaacagc
     2401 acttcacttg gtatcgataa ccttctcctc ttcgggaaca gttacactca gcagaattct
     2461 cttgatgtaa ttcttgagga ccttggtgtg aacgactcgg ttgcacgtag ctctggggga
     2521 ttgacccttg ataaccattg gaataatgtc aacacctctg ctaattcttg gaacacgact
     2581 ctccgggact ctagtgtaga ttgggactat gttgtccttc aggaccagag tcagattccc
     2641 ggcttctaca ggacgaatgc aaactggatt gatagtcgag atgctgcaat aaatctcgca
     2701 gatgcaatcg aggacgaatc ctcagaggtt cttctgatga tgacttgggg tcgacgcaac
     2761 ggtgacgcca ctaatcctac catctacggt aacttcactc agatgcagga ccggctagag
     2821 gccgggtaca tcgactaccg tgacaatatc acggcacagg gccatcaagc ttggattgcg
     2881 cctgtggggc tcgctttcgc tcatattcac gatggcatcg ttgcgaatgg gtcgaatcct
     2941 cttgtttcag gagcgacatt tagtgctctt tactctccag atgggagtca tccatctctt
     3001 gcaggttcgt atctcgctgc tctcgtaatc acagcgacga tatcgggtca gacaactgtt
     3061 ggatccaacg actcggtatc cctc
//
LOCUS       DUKB01000023            3306 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_111340, whole genome shotgun sequence.
ACCESSION   DUKB01000023 DUKB01000000
VERSION     DUKB01000023.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_111340"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..950
                     /locus_tag="HA345_00900"
     CDS             <1..950
                     /locus_tag="HA345_00900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HIH83944.1"
                     /translation="PWHYPEDRGRYMSASVIVAERGPDRNMSYHRQFLSGPDRLVARL
                     VPRHLRQLTDEARSDEEDLQVAIINGADPCVLLCAAMSFDERKDELCVAAALHQKLYG
                     EPLRVVEVSNGVLVPADCEYVFTARITSEDDDEGPYVDITGTVDDVRKQPVIQVEAVH
                     HRDNPIFHAILPAGKEHKTLMGLPRAPTIKAAVSKVTDCTDVHLSEGGCGWLSSVVAI
                     NPSSSEDALKAIQAALDGHRSMKAVTVVDDDIRIDDPVHVEWAMMTRWQPDRDTMILS
                     AQKGSSLDPSRSEDGTTSKVGFNATIPYGEDREPYSAVN"
     gene            1007..1960
                     /locus_tag="HA345_00905"
     CDS             1007..1960
                     /locus_tag="HA345_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH83945.1"
                     /translation="MGDRHRAQAEKFLRNSEKDENKRIQCLNWAEQSSRQSVLYDFTN
                     DENWRLLIQIKVLIGDKPGIHAVIEDLFLILGRDPERLRTLQEVDLLDHGVDLVNAAF
                     EVDPLDPELWYHNVASDEGRFEEFSERIKRLDLRDPRTNIVFGRRIERLYTAGRHDEF
                     IPLARRIVAQRPQNHEAWIGLGRLHERREEYDEAWLCYDQAQTHFPSRPVRDEYRERM
                     DARLDGERKSWKIPDISTREIFLTRMESLATPESSNQIALEIEDDDTEVSEVGESEQD
                     RLKRMLDEGEIQAALFLARRLVTSGEEWAQAYYDSAMEQLQ"
     gene            1915..2352
                     /locus_tag="HA345_00910"
     CDS             1915..2352
                     /locus_tag="HA345_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009333393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HIH83946.1"
                     /translation="MGTSLLRFRDGATTMTTKPRWVIVLAIQPVSGHWLMVQHHERGW
                     ELPGGRVEKGESVESAALRELREETGASGKVAQIPFLDTLESGMVVFVEINHTGVKDE
                     WDSKDPKIQRVSFHQEIPEGLYWGNEELKSILDYWRASRTKVS"
     gene            complement(2319..3221)
                     /locus_tag="HA345_00915"
     CDS             complement(2319..3221)
                     /locus_tag="HA345_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83947.1"
                     /translation="MTIGLSDDEFANLEDLVGSNQIEEAKEKLGDSICAKGSFISSAI
                     SLAENDIEGALASLEECMNRSRTPSTRNPVLEARARMLRGLCRSGLGEAIEASADLRW
                     AMDRLNAVDSGSEAHGIAVLNVAAWHRQNGEPVMALATHSEIAREKTHVPEIVAVSRQ
                     RVASIHADLGDLAGSIRHHWTAWSMARGSGMDVVAETSCLHIIDLGLANVNDASSRMK
                     NRIEDARPEPRKESTEPSIHPDDLRDATEWIVPRVLRDVSGEQRIDMQLVIEALCVLD
                     SASIELFNEVKDAIQDTLVLDALQ"
BASE COUNT          922 a          782 c          774 g          828 t
ORIGIN      
        1 taccttggca ctaccctgag gatagagggc gctacatgtc tgcatccgta atcgtcgcag
       61 agcggggacc tgaccgcaac atgagttacc atcgtcagtt tctttcaggg ccagatcgac
      121 ttgttgcacg tcttgttcct agacatctta gacaattaac agacgaagcc cgctccgacg
      181 aagaagatct tcaagttgca atcatcaatg gggctgaccc ctgtgtcctc ctctgtgctg
      241 caatgtcttt cgacgagcga aaggatgagc tttgtgttgc tgctgcacta catcagaaac
      301 tgtatggtga acctcttcgc gtagtcgagg tttcgaacgg agtccttgtc cctgcagatt
      361 gtgaatatgt attcactgcc agaattacaa gcgaagatga tgatgaaggg ccttatgtag
      421 acatcaccgg aacagttgat gatgtccgaa agcaacctgt aattcaggtt gaggcagtac
      481 atcatagaga caatccaatc ttccatgcga tcttacctgc tggtaaggag cacaagacac
      541 tcatgggatt gcctcgcgcc cctacaatca aagcagcagt atccaaagta actgattgca
      601 ccgacgtcca tcttagtgaa ggaggatgtg gctggttatc ctccgtcgtt gccattaacc
      661 caagctcatc agaggatgca ctgaaggcaa ttcaagctgc actggatggt catcgatcaa
      721 tgaaggccgt gacagttgtc gatgacgata tccgcatcga tgaccccgtt catgtcgaat
      781 gggcaatgat gacacgttgg cagcccgatc gcgacactat gattctgagt gctcaaaaag
      841 gttcgagtct agatccgtca agatccgagg atgggaccac ttcaaaggtc ggatttaatg
      901 caactatacc ttatggtgaa gacagggaac cctactccgc tgtcaattga tggtggtgag
      961 cgtgggtcgg agaagtggtg cagaactcca acatccacgg aggagtttgg gtgatcgaca
     1021 ccgtgcacaa gctgagaagt tccttcgaaa ttcagagaag gatgagaata aacgaataca
     1081 atgtttgaac tgggccgaac aatcatcacg tcaatcagta ttgtatgatt tcactaatga
     1141 tgagaattgg cgactcctca ttcaaatcaa ggtcctaatc ggtgacaagc caggtattca
     1201 tgccgtgatc gaagatctct ttttgattct cggccgagat cctgagcgtt tacgaacact
     1261 ccaggaagtt gatttattgg atcatggcgt agacctcgtt aatgctgcct tcgaagttga
     1321 ccctctagat ccagaactgt ggtaccataa tgtcgcatct gatgaaggac gttttgaaga
     1381 attcagtgag agaatcaaaa gattggatct tcgcgaccct agaacaaaca tcgtttttgg
     1441 acgaagaatc gaacgccttt acacagctgg acgacatgat gaattcattc ctcttgctcg
     1501 tcgaatcgtt gcacaacgtc cacagaacca tgaagcatgg attggactag gacgtcttca
     1561 tgagcgtcgg gaggaatacg atgaggcatg gctctgctat gaccaagcgc agacacattt
     1621 cccatctcgc cccgttcgag acgaatatcg tgaacgaatg gatgcgcgct tggacgggga
     1681 acgtaaatct tggaagatac ctgatatctc gactcgggag atcttcctca ctaggatgga
     1741 aagcctcgca acgcctgaat catcaaatca aatagcatta gaaattgaag atgatgatac
     1801 tgaagttagt gaagtcggag aatctgaaca ggatcgtctc aagagaatgt tagatgaggg
     1861 ggagatacaa gccgctctat tccttgctcg tcgcttagtc acatccggtg aggaatgggc
     1921 acaagcctac tacgattccg cgatggagca actacaatga ccactaaacc aagatgggtt
     1981 attgtcctcg ccattcaacc tgtatctgga cattggttga tggtgcagca tcatgaacgc
     2041 ggttgggaac ttcccggtgg ccgggtcgaa aaaggagaat ccgttgaatc agccgcatta
     2101 agagaattaa gagaagagac tggggcgtct ggaaaagtcg ctcaaatccc attcctagat
     2161 actcttgaat cgggaatggt tgtctttgta gaaatcaatc atacaggtgt aaaagatgaa
     2221 tgggattcaa aggatccaaa aattcagcgt gtttcattcc accaagaaat tcctgaaggc
     2281 ctctattggg gaaatgaaga actcaaatct atactagatt actggagggc atctagaact
     2341 aaagtatcct gaatcgcgtc tttcacttcg ttgaatagtt ctatggatgc tgaatctagt
     2401 acgcataatg cttcgattac caactgcata tcgatacgtt gctcaccgct aacatctctc
     2461 aaaactcgtg gaactatcca ttccgttgca tcacggagat catcaggatg tatactcggt
     2521 tcagttgatt ctttgcgtgg ctctggacgt gcatcttcaa tacgattttt catcctactg
     2581 gaagcatcgt tgacattagc taagcctagg tcaatgatgt ggagacagga ggtctcagca
     2641 actacatcca tacctgaacc acgtgccatt gaccacgctg tccaatgatg acgaatcgaa
     2701 cctgcgaggt cgcctaaatc tgcatgaatg gatgcaacac gttgtctcga taccgctaca
     2761 atctcaggca catgtgtctt ctctctagca atctcagaat gggtagccaa cgccattaca
     2821 ggttcaccat tctggcgatg ccaagcagcg acgtttagca ctgcaatacc atgtgcttca
     2881 gatcccgaat ctacagcatt taggcgatcc atcgcccagc gtagatcagc agaagcctcg
     2941 atggcctcac ctaaaccaga tcggcaaaga cctcgcaaca tcctcgctct ggcttcaagt
     3001 actggattcc gcgtagatgg ggttcgtgaa cggttcatac attcctccaa cgaggcaagt
     3061 gcaccttcaa tgtcattttc agccaatgaa atcgctgatg agatgaaaga accctttgca
     3121 caaattgaat ccccaagttt ttccttagct tcctcaatct gattcgaacc aacgaggtct
     3181 tctagattag caaactcatc atcactcaat ccaatagtca atgttcgcca cctcctattg
     3241 cagaaatcct agacaggata ctagacactg cttctactga atcaatatca gtagtccatc
     3301 cagcag
//
LOCUS       DUKB01000024            8346 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_91819, whole genome shotgun sequence.
ACCESSION   DUKB01000024 DUKB01000000
VERSION     DUKB01000024.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8346)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8346)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8346
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_91819"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..457)
                     /locus_tag="HA345_00920"
     CDS             complement(<1..457)
                     /locus_tag="HA345_00920"
                     /inference="COORDINATES: protein motif:HMM:NF013885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83948.1"
                     /translation="MTGLSKVLIAFLLTIVVLSPIVTAQDSGASSSEESNIIIDVVLP
                     LSLAYIMFSLGLGLRVTDFSLILSDPKAFAVGLGNQMIVLPIVGFGIANIFDLSGEMA
                     VGLMILACCPGGVTSNILTKLSGGDTALSISYTAVVSVVSVVTLPLIVGF"
     gene            504..>701
                     /locus_tag="HA345_00925"
     CDS             504..>701
                     /locus_tag="HA345_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83949.1"
                     /translation="MSLAPVDFDFGNVTNYSFATTVTCASDEALKLFVEGYGHYLNYN
                     HEQAIGCFIACTEADPNCAMAW"
     assembly_gap    702..1035
                     /estimated_length=334
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1036..2589
                     /locus_tag="HA345_00930"
     CDS             <1036..2589
                     /locus_tag="HA345_00930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83950.1"
                     /translation="ISYCLSSNYNWAPGLGSGYDAIQQALAVMGHCSELEQDLIRALS
                     TRHTAEARDSADPTTLNMGNLPELNVAFAEAMAPLYSKYDGNLAVTAIYVEALMNLKA
                     WQLWDKNTATGEITPADENTLLLVKIMEDAFESSEAARVDPALCHLYCHALELSPFPE
                     RALPAADVLRTRMPGLGHLVHMPSHIDAWVGQWKEAIECNIAAVDADDHYVEVTGNDS
                     QFYKFYRMHNHHFIVWCAMFDGQYETALKYARKAVETLPSGDANHGVQFMLAGIIPMG
                     AIFLESYVTMPWHVMIRFGKWDEILAESIYTDKEVFPATIATQHYARGVAYASKGMVP
                     EAEAEQVLFKEALQNPALAGRMMHNNVMYQDPSEGPSILNVNAAILEAEIEYRRQFIS
                     KSNGSPHDFTAAFEELRRGVDLSLNLAYNEPWGQMQPVRHILGALLFEQGHIEEAEEV
                     YRADIKLWKDNMWGLLGLKLCLEARGDAHEELAEVTALFNERSSRADIVPAKTCFCAQ
                     DALQKNCCD"
     gene            complement(2624..3910)
                     /locus_tag="HA345_00935"
     CDS             complement(2624..3910)
                     /locus_tag="HA345_00935"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012376.1,HMM:NF025374.1,HMM:NF027967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purple acid phosphatase"
                     /protein_id="HIH83951.1"
                     /translation="MPLAQAQSLNEVFQECPGTIVGSTEPRQIHLQATGDPATMNVMW
                     ATEGRATGEVEWNGQTAVSSDYCYNHDMAFHMATMTGLIPGEEVTYRVGSGNAWSNDY
                     TFTPIDPDAIHFEWISIADHGESSEGMDVSDAIIADTDAQLVTLSGDISYADGEQSTW
                     DVWFDYQEESMRRIPWMTAVGNHENEPGYGFIPYEHRFDSDGQIESEIFWYSRQYPGV
                     HMVFMSTEHDYDAGSSQYTWLDQELASINRENTPFLIVYGHSPMYSSNSYHGSEVELR
                     DALEGLYVEHGVDLVIAGHDHFYERTWPVSDESVMDKGMEDRFGRGHGPIHLVIGIAG
                     RSSYEELDEPQPEWSAFRENSTYGWTRWVYDGDAREITMTHHRTDGTIGDQFTLQEAP
                     TIGESENEFLGVPGFGSLLPILAMLGASLNESRKEK"
     gene            complement(3997..4536)
                     /locus_tag="HA345_00940"
     CDS             complement(3997..4536)
                     /locus_tag="HA345_00940"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HIH83952.1"
                     /translation="MSDDFLLRLRESVRTVPDFPIDGIMFRDITPVLADGVLLSSVVD
                     RMVSDLENLGWIPTHIVGPESRGFIFGSMVALRLGIGFIPVRKPGKLPHDIERVEYSL
                     EYGENILEIHRDALSEGDRVVIVDDLLATGGTVAASVHLCESTGASVIGGLFMIELDG
                     LNGTTNAGIKTHALLNYPA"
     gene            complement(4581..6089)
                     /locus_tag="HA345_00945"
     CDS             complement(4581..6089)
                     /locus_tag="HA345_00945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019621163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HIH83953.1"
                     /translation="MEIEALDDYFGYTEKGSSFENEIRAGVATFLTMAYILVVNPAML
                     SLAGIPFDDALFATALAAFIGCMVMGLWANLPFALAPGMGLNAFFVFGVVFTMGIGWE
                     LALAAVFVEGVFFLIISLPQVGWRSAMINSIPKDLKIATGAGIGTFLAIIGLREMGWV
                     VDHPATLVSLGPTGSFFWNTAATGEGHMHGAIIAMVALLAIAVMLARGMKGAIIYGVL
                     GASIVGWLTSAYDPWLDNAAGLGTDGWVCIPLDGGGYLDPSCIYASAPALGDIFGFVG
                     MPTESMGAFVGALGDIGSNLDTFILVMVAFLFVDIFDTAGTLYSVGRQAGYVDEDDKL
                     EKADEAFMADAAATIVGAALGTSTTTTYIESAAGIEEGGKTGLVAVTVGVLMLSGLFL
                     AGLFKAIPQFAAACALVAIGAMMMRQAADIDWKNKEMALPAFLTIVMMPFTYSIAVGI
                     AAGCVSWVLIKMGMQKFEEVSPVMYGIAAFLVLYYIGPGDGNTFQWIFSYIF"
     gene            6497..7129
                     /locus_tag="HA345_00950"
     CDS             6497..7129
                     /locus_tag="HA345_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83954.1"
                     /translation="MIELSDSDWGKYDLGNILHGPGSYYLNDPSITQRFPEITTEMEA
                     WMMVRLLTQESVDNPPVMWQLTNIGSGPSHLILHRRKFFDQNLDADTGKQPSDVANLI
                     MLNFTGKPHPYGHPVYYKVQSSVQDMSGSDTIQDKIQAIGQRGFPDDPQTIWHIDKID
                     RSYDGNYLVLTSPVPHIGYQKVMFVLTSFDVNSVKECHVLDDGKWLLLFS"
     gene            7163..7513
                     /locus_tag="HA345_00955"
     CDS             7163..7513
                     /locus_tag="HA345_00955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HIH83955.1"
                     /translation="MNLRKKFGLFRDLWSPKVVGEINDYQVKLAKIEGEFVWHQHDHT
                     DEFFLVVEGSMRIEYENHHVSLDEGDIHIVPKGIRHRTVADEECWIVIIEPRDVVNTG
                     DVDSDMTAENDVWI"
     gene            complement(7514..8302)
                     /locus_tag="HA345_00960"
     CDS             complement(7514..8302)
                     /locus_tag="HA345_00960"
                     /inference="COORDINATES: protein motif:HMM:NF012677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HIH83956.1"
                     /translation="MSRETERALALFGASVFLFPTPLEELADVAHEIGARVMYDGAHV
                     LGLIAGGVFQDPLREGADVMTGSSHKTFPGPQGGFLLSNDDDEKFHRRLNNAVFPGTN
                     SSYHLHHVAGKVVALSEFEAFGEQYARDTVRNAKALAAALATEGFDVLAEDRGFTASH
                     QVLTRHGETDSGAGRKAAAMLEEAGIITNMNMLPGDTKAMTPSGLRLGVQELTRHGMG
                     TTEMEEVATCFRRVLIDQEDPSTVKTRVNQIRSDFTEVRYCFQE"
BASE COUNT         2053 a         1965 c         1914 g         2080 t
ORIGIN      
        1 agaaccccac gattagcgga agtgtgacta ctgataccac acttacaact gcggtgtaag
       61 aaattgatag agctgtatcc cctcctgaca atttcgtcag aatattagat gtgactcctc
      121 ctgggcagca ggctagaatc atcaatccca cagccatctc tccggataaa tcaaagatat
      181 ttgcaattcc gaaaccaact atcggcagga caatcatctg atttcctaga cccactgcaa
      241 atgcttttgg atcactcaaa atcagactaa aatcggttac tcttagccca agtcccaatg
      301 agaacatgat atatgccaga gataagggta gaacgacatc aatgatgatg ttggattcct
      361 cactcgaact agcaccagag tcctgagcag taacaatcgg tgaaagaact actattgtca
      421 gaagaaaagc aattagtacc ttagataatc cagtcatata acttagggat tatattataa
      481 tcaatagaca tgacggataa attatgtcgc ttgcacctgt tgattttgat tttggtaatg
      541 ttacgaatta ctcttttgct actactgtaa cctgtgcaag tgatgaggcg ctgaaactct
      601 tcgtcgaggg gtacggtcac tatctgaatt acaaccacga gcaagccatc ggctgcttca
      661 ttgcttgtac tgaagcggat ccaaactgtg ctatggcttg gnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnatttc ctactgcctt tcctctaact acaactgggc tccagggctt
     1081 ggttcgggat acgacgctat ccagcaggcg cttgctgtaa tgggccactg cagcgaacta
     1141 gagcaggacc tgatacgtgc cctttccaca cgacacactg ccgaggcccg ggattcggct
     1201 gacccaacta cgctcaacat gggcaatctt cccgaactca atgtcgcttt cgctgaagcc
     1261 atggcgccgt tgtattcgaa atatgacggt aacttagcgg tcaccgccat ttacgttgaa
     1321 gcgctaatga atctcaaagc gtggcaattg tgggacaaga atacggccac gggagagatt
     1381 acgcccgcgg atgagaacac tctacttctc gtcaaaatca tggaggatgc ctttgaatct
     1441 agtgaagcag cgcgtgttga ccctgctcta tgccacctct actgtcacgc actcgaactc
     1501 tcgcccttcc cagaaagagc cttacctgct gctgacgttt tacgcacgcg aatgcccggt
     1561 ctagggcatc tagttcacat gccatcacac attgatgcgt gggtaggaca gtggaaggaa
     1621 gcaatcgagt gtaacatcgc cgcagtcgat gctgatgatc attatgttga agtcactggt
     1681 aacgattcgc agttctacaa gttctatcgt atgcataatc atcacttcat cgtctggtgt
     1741 gcgatgttcg acggccaata tgagacagcg ctgaagtatg ctcgcaaggc agtggaaacc
     1801 ctcccttctg gtgacgctaa tcatggtgta cagttcatgc tcgccggcat catcccgatg
     1861 ggcgctattt tcctagagtc ctatgtcacg atgccttggc acgtgatgat ccgtttcggc
     1921 aagtgggacg aaatcctcgc cgagtcgata tacactgaca aggaggtatt cccagccaca
     1981 atcgctactc agcactatgc gcgtggtgta gcatacgctt ccaagggtat ggtgccagaa
     2041 gctgaggcgg agcaagtcct gttcaaggaa gcactgcaga acccagcgct tgctggccgt
     2101 atgatgcaca acaacgtgat gtaccaagat ccgagcgaag gcccgtcaat cctcaacgta
     2161 aacgcggcca ttctggaagc tgagattgag tatcgtcgcc agtttatctc taagagcaat
     2221 ggttcccctc atgatttcac tgccgcgttc gaagagttac gccgtggggt tgatctctcg
     2281 ctgaacctag cctacaacga gccatggggc cagatgcagc cggttcgtca catcctaggg
     2341 gctctcctgt ttgagcaagg tcatattgag gaagctgaag aggtctaccg agccgacatt
     2401 aagttgtgga aggacaacat gtggggtctc ctcggtctca aactgtgctt ggaggcacgt
     2461 ggcgatgcac acgaagagct cgctgaagtg acagctttgt tcaatgagcg cagttcccgg
     2521 gcggatattg tgccagcaaa gacctgcttc tgcgctcagg acgcacttca gaagaattgc
     2581 tgtgactgat tcgtattaga tacgttcagt atgtcctcta tgctcacttt tcctttcgtg
     2641 attcattcaa tgaggctcct agcatagcaa gaattggaag taaggatccg aatcctggga
     2701 ctccaaggaa ttcgttctcg gattcaccta tagtcggtgc ttcttggagt gtaaactgat
     2761 caccgattgt cccatcggtt cgatgatgag tcattgtaat ttctcttgca tcaccatcgt
     2821 atacccaacg agtccaacca taggtactat tctcgcgaaa agcactccat tctggctgtg
     2881 gttcatctaa ttcttcgtag gatgatcgcc ctgcaatacc gattactagg tggatggggc
     2941 catggccgcg gccaaatctg tcctccattc ctttgtccat tacagattca tctgatactg
     3001 gccaagtcct ctcatagaag tgatcgtgtc ctgcgatgac taggtctact ccatgctcta
     3061 cgtatagccc ctccaatgca tctcgtagtt cgacttctga gccatggtaa ctgttgctcg
     3121 agtacatcgg gctatggcca tagacaatga ggaatggtgt attctcacga ttgattgaag
     3181 ctagttcctg atctaaccaa gtgtattgag aactccctgc gtcgtaatca tgttcggtag
     3241 acatgaagac catatgtact cccggatatt gcctactgta ccaaaatatc tcagattcaa
     3301 tttgaccatc tgaatcaaat ctatgttcgt aaggtatgaa cccatatcct ggttcgtttt
     3361 catgattgcc gacagcagtc atccagggaa ttcttctcat gctttcttct tggtagtcga
     3421 accaaacatc ccaagtagat tgttctccat ctgcatagga gatgtcgcca gacagcgtca
     3481 ctagttgggc atcagtatcg gcaataatag catcagatac atccattcct tcacttgatt
     3541 ctccatgatc tgcaatagaa atccattcga agtgtatggc atccgggtct attggtgtga
     3601 aagtgtagtc attggaccat gcgtttccag atccaactcg atatgtgact tcctcgcctg
     3661 gaatgagtcc agtcatcgtc gccatgtgga atgccatgtc atggttgtag cagtaatctg
     3721 aactaacagc tgtctgccca ttccattcca cttcaccagt tgcacggcct tcagttgccc
     3781 acatgacatt cattgttgca gggtcaccag tcgcttgtag gtggatttga cgaggttcgg
     3841 tactgccaac tattgttcca ggacattcct gaaacacctc attgaggctc tgtgcctggg
     3901 caagtggcat cagaagtaga aggatgaata ggcacgccgc aatggttcgc acatttgcct
     3961 tagtatcacg ccttgactta gtagtatatc cttagatcaa gcagggtaat tgaggagagc
     4021 gtgtgttttg atacctgcat tagtggttcc attcaggcca tctagttcga tcatgaatag
     4081 cccgcctatg acggaggcgc ctgtggattc acaaagatga actgatgctg caacggtgcc
     4141 tccagttgcc aataaatcgt ctactatcac aacacgatcg ccttcggata acgcgtctct
     4201 gtgaatctct agaatattct cgccatactc gaggctgtat tccactcgtt caatatcatg
     4261 aggcaactta ccaggtttcc ttactggaat gaaacctatt cctaacctca atgcgaccat
     4321 cgatccgaaa atgaagccac ggctctctgg ccctacaatg tgagtgggta tccatcctag
     4381 attctctaag tctgagacca ttcggtccac gacagagctc agaagtaccc catctgccag
     4441 tacaggtgtg atgtctctga acatgattcc atcaataggg aaatctggta cggtgcgtac
     4501 agattcacgg agtcgtaaga gaaaatcatc actcatgcta accgctccac catggggcca
     4561 ttaaacccat tttcggcctc tcagaatatg tatgagaaga tccactggaa tgtgtttcca
     4621 tcaccagggc cgatgtaata cagaactagg aacgctgcga tgccatacat cacaggactg
     4681 acttcctcaa acttctgcat tcccatcttg atgaggaccc aactgacaca tccggcagcg
     4741 ataccgactg cgatcgagta ggtgaatggc atcatcacaa tcgtgaggaa tgcaggcaag
     4801 gccatctcct tgttcttcca gtcgatatca gccgcttggc gcatcatcat ggcgccgata
     4861 gcgacaagtg cacaggctgc agcgaattgt gggattgcct tgaataggcc tgctaggaac
     4921 agtccggaga gcatcaggac gccgacagtt acagcgacaa gtcctgtctt tccaccctct
     4981 tcgattcctg ctgcggactc aatatatgtg gtagtggtgc ttgttcctag ggctgcaccg
     5041 acaatcgttg ctgcagcgtc agccatgaat gcctcatcgg ccttctcgag cttgtcgtct
     5101 tcgtcaacgt agccagcctg gcgtccaacg gagtagaggg tgccagcagt gtcgaagatg
     5161 tcgacgaata ggaaggcaac catcacgagg atgaatgtgt cgaggttgct accgatgtcg
     5221 cctagggcgc ctacgaaggc acccatactc tcggtaggca tgcctacgaa tccgaagatg
     5281 tcacctagtg caggggcgga tgcatatatg caacttggat caagatatcc tccaccgtct
     5341 agagggatac aaacccaacc atctgtgccg aggccagcgg cattgtcgag ccaaggatcg
     5401 tatgcgctgg taagccaacc gactatggat gctccaagga cgccatagat gattgcgccc
     5461 ttcattccgc gtgcgagcat tactgcaatt gcaaggagtg caaccattgc aatgattgca
     5521 ccgtgcatgt gcccctcgcc agttgctgct gtattccaaa agaaactccc tgttggtcct
     5581 agtgagacca aggttgctgg gtggtcgacg acccatccca tttcgcgtag accgatgatt
     5641 gcgaggaagg ttccaatacc tgctccagtt gcaattttga ggtcctttgg aattgagtta
     5701 atcatcgcac tgcgccatcc aacttgtggt agtgaaataa tcaagaagaa gacaccttcg
     5761 acgaatactg cggcgagagc gagttcccat ccgatgccca ttgtaaagac aacaccgaac
     5821 acgaagaatg cgttaagccc catcccagga gccagagcaa atggtagatt tgcccaaagt
     5881 cccatcacca tacagccgat gaatgccgct agagcagtag cgaacagtgc atcgtcgaat
     5941 gggattcctg ccaaactgag catggcagga ttcaccacaa ggatatacgc catcgttagg
     6001 aatgtcgcaa cacctgctct aatttcgttc tcaaatgagc tacccttctc agtgtagccg
     6061 aagtagtcgt ccaaagcctc gatttccatc ttcaattccc ctattatcct cccctatcct
     6121 aattgtcggg ggataaatgt tcagttttag agaaaggttt gcaatcgttg ttcaatttat
     6181 tacaaaatat gcaaaaattc ggttattcgt ctcctagaat tcagaattaa ctctgcatgc
     6241 cactattttc ttctctttgt tgcaattccc tcttcaagaa tcgcttgaaa tgacattcgc
     6301 ctgaatgctt atgttacaat cattccaata gaggctcatg gacacgtccg ttcgctcagc
     6361 aggagaggtc atatcgctct tggcgatttt tatgcgggtt cgaatcgtat tggaactcaa
     6421 gtcatcaatg acccaagcga gattgcaaaa gctgtgatag aggcatacaa ggctggaaga
     6481 aaagaaagat cggtggatga ttgaattgtc tgactcagat tggggtaaat acgacctggg
     6541 aaatatcctt cacggtccag gttcatacta tctcaatgac ccatccataa ctcagagatt
     6601 tccagagatt actactgaga tggaagcatg gatgatggta cgtctactta cgcaggagtc
     6661 agtagacaac ccacctgtga tgtggcaatt gacaaatatc ggaagtgggc ctagtcatct
     6721 gattctgcat cgaaggaaat tttttgatca gaatttagat gcagatactg ggaaacaacc
     6781 atctgatgtg gcgaatctaa tcatgttgaa ttttactgga aaacctcatc cttatggcca
     6841 tcctgtctat tacaaagttc aatcctcagt gcaagacatg agtggttccg atacgattca
     6901 agataaaatc caagcgattg gccagcgtgg cttccctgac gacccccaaa caatttggca
     6961 tatcgataag atcgatcgat cgtatgatgg aaattacctt gttttgacaa gtccggtacc
     7021 tcacatagga taccaaaagg tgatgttcgt attgacttca tttgatgtta atagtgtaaa
     7081 ggaatgtcat gtcttagatg atgggaaatg gttgttgttg ttctcctgaa gaatactgat
     7141 gaataggggc gagagtgtca taatgaacct tagaaagaaa ttcggtctat tcagagatct
     7201 ttggagtcca aaggttgttg gcgaaattaa cgactatcag gtaaaacttg caaaaatcga
     7261 aggcgagttt gtttggcatc agcatgacca cactgacgaa ttcttcctcg tggtggaggg
     7321 ttctatgcga atagagtacg aaaatcacca tgtttctctc gatgaggggg atatccacat
     7381 tgtcccaaaa ggtatccgtc atcggacagt ggctgatgag gagtgttgga ttgtcattat
     7441 cgagcctcga gatgtcgtga atactggcga tgtggacagt gatatgactg cggagaatga
     7501 tgtctggatc tgatcactct tggaagcagt aacgcacttc tgtgaagtcg gatcttattt
     7561 gattcacccg tgtcttgact gtactagggt cctcctgatc gattagaact cgcctgaagc
     7621 aagtggcgac ttcttccatc tcagtagttc ccattccgtg tcgtgtcagt tcttggacac
     7681 ctagccggag acctgatgga gtcattgctt tcgtgtcacc cggaagcata ttcatgttcg
     7741 tgatgatgcc cgcttcttcg agcatggcag cagcttttcg gccagcacct gaatcagttt
     7801 caccgtgacg agttagtacc tggtgactcg cggtgaaacc acgatcctcg gctaaaacat
     7861 cgaatccttc agtagccaga gcggcagcca gtgcctttgc gttgcgtact gtgtcgcgag
     7921 cgtattgttc cccgaatgcc tcaaactcgg acagggccac aaccttgcct gcgacatgat
     7981 gcaggtggta ggaggagtta gttccaggga acactgcatt gtttaggcga cggtgaaact
     8041 tctcatcatc atcattggac agtaggaatc ccccttgagg tccagggaat gttttgtgtg
     8101 aggatccagt cattacgtcg gcaccttcac ggagtgggtc ttggaagacg cctcctgcga
     8161 ttaacccgag gacatgtgct ccgtcataca tgacgcgggc tccgatctca tgagcgacat
     8221 ccgcgagttc ttctagtggg gttggaaaga ggaacacaga agcgccgaat agagcaagag
     8281 cccgctcagt ttcgcgactc atcgcggcac cagcttcgat gtctggctcc attcgggcga
     8341 tatccc
//
LOCUS       DUKB01000025            9841 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_19977, whole genome shotgun sequence.
ACCESSION   DUKB01000025 DUKB01000000
VERSION     DUKB01000025.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9841)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9841)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9841
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_19977"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1400
                     /locus_tag="HA345_00965"
     CDS             <1..1400
                     /locus_tag="HA345_00965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83957.1"
                     /translation="NSYFNGMNAVVDGTATAMEGDNHTISFSAGSSDTWIEFTGASVY
                     EMILSSEIRIDYPGIKPTDTIPIGDIPHENWMVNDPGTFDIEIQGTMNANGAHIYGAK
                     INVFGSLNLSTTDIVRSTPILAADSASIKMNAVDMKDSRDDHHITAGIQTVIDTSTST
                     VHGTLVDFWERQLEQKIQFRANEVIVTIADFGYPPSTTNPIPTNEQGLMTLPLRTVEI
                     GFADGTVWNEDATIVIQSYKTAWNAQLGDYGSPSNLPIETTTTYQSDVLPMLTIDSIA
                     SEETSVATDGRVKMNATITNSGSGDARIGLECFIGNGSAADVGGYPVLEIPGDSTKSV
                     EFTWRGVAETGDQSITCGVIQPAQLVIEGAYGGLPVDSESVFWSEPVAETEGLGMLPL
                     ITAVLVGAVLVGIAALQYSANLQKERDESKKDGHTEEEGMSSPRTVNVTYNIQDSVVS
                     GDLEVTGSKQRDAED"
     gene            complement(1401..2618)
                     /locus_tag="HA345_00970"
     CDS             complement(1401..2618)
                     /locus_tag="HA345_00970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83958.1"
                     /translation="MSGGLLDRVEVEADEEPELEVEETTVSATPISEDVGDSIEGLLG
                     RTFTAILAMIIVPFFLVMWFDEYIPLSLNALMPLILLGGAGASWFWLGLQNPLEQGPT
                     AIMSAAIVILVALMLAVTPTLLGTVLTGSMSFGGIEASEDGSEFEVKIRQNGGSGSHD
                     AVVSIVRNGATVYDSTHAFSIDKSDGLGDYGLFTIPVDSVYSGNALGSSGGEYTIDIG
                     VGGQTWSNTLDSNFMTRTVTEGQTDVTPVFIGEGTGQSCDDGSVRCVSGVSLSVWAGL
                     ESQNSPLALPWANFNFTASMAGPSGTVVTYPTVKVSMTDASWDSEGGLYGNGTAIMGD
                     EGYAILQLEGDAEQETLSIVSRDMWQGDEKGCYTFTVAITQDSFWGEETVTASSEHSF
                     QSQDGSETWLAGC"
     gene            complement(2709..3644)
                     /locus_tag="HA345_00975"
     CDS             complement(2709..3644)
                     /locus_tag="HA345_00975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83959.1"
                     /translation="MKSVRTVIVFLTIYALSMWVGAAYTVNAQASPNPDIGIVCSPAN
                     FPIEVYPGATRTGTTYCTLNNPTAYSENVAITVTAGGLAYAAPGTVTVGAGQEVTFEV
                     SVRGDQRMAEGQRTVSITARVDTATGVPCGTCTPKTTSVLVVIKQFSRLRVEADEPFK
                     QLRPKVDYTFNFKVYNDGNAYDRFNIDVANREDLEDAGFQISLPQVSTEIEAQAPPDN
                     VRVIMRTPKVQGWSDIYYQLQFQATSDYSVRTEGVPNYQVQMVTIYIRGVYLPGFEMI
                     GSVMMLGLAAAAIARRHSDDEEISEDDDDLPILML"
     gene            complement(3721..4689)
                     /locus_tag="HA345_00980"
     CDS             complement(3721..4689)
                     /locus_tag="HA345_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83960.1"
                     /translation="MNWAILLCMVALISLSTPSLSAQGPLPSIVLECDQQSITIEVHP
                     GSSKVANVDCTLSNPSVHSMSADITVSSGSLSNAAPGSVTIAAGDEQTFQVALRGEST
                     MSPSMIVVAINASVTTVNGVPCTFGCPEDSADVDVEVVQFARISAQTRAGELNLGVDQ
                     SAEVVIDLQNLGNGQDIFEIEIENQSGLESLGFSFDIQSTGNLDPQEKVPHNFTVMTG
                     GDIPTDTFEIQVYIRSSFDPEIEVMEVFIIQAEGPPEPLVTLGSDETALVMGGISVAG
                     LILVFLIVFMGVRSARRRRLSRGPSEEDEWSEVDEYDDFDDLDDFM"
     gene            complement(4748..4821)
                     /locus_tag="HA345_00985"
     tRNA            complement(4748..4821)
                     /locus_tag="HA345_00985"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4785..4787),aa:Ile,seq:cat)
     gene            complement(4864..6147)
                     /locus_tag="HA345_00990"
     CDS             complement(4864..6147)
                     /locus_tag="HA345_00990"
                     /inference="COORDINATES: protein motif:HMM:NF014069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HIH83961.1"
                     /translation="MGPRGDEVEARAAKVRVIRDPLHGDIRIPDEVKALIDTATFQRL
                     HRIKQLSTCNLVFPGATHSRFAHSLGAYHLSTQLLSRLRDLHPGVISDEDAELVGYAA
                     LLHDIGHPPFSHMLEDREIFRTFRGHEEWARLILEDSENDLRQALVELVGERGISRLM
                     DIYAGRVHPIALYEIVSSQLDVDRMDYLLRDQHHSGADVGTFDVQRIFRALRIAEDGS
                     LRLRPEGVNAVESYLLTRLHMYDLVYFHKMNILTSEYHKLLLRRARELASKGELALER
                     TMESMLLDDDLSSEDYLRLDDGVVSSAVGSWHGHKDPLLSHWVDRLLSRDSFHKRLRI
                     PGITSGILQRCMIPLSAEITAAGHDPMRDLLLARVDNTGYRPYMGGIRLTDGRDIADV
                     SAVAAAISKTVHDTMVFVPVNVRQACEEIVRNTLS"
     gene            complement(6174..7019)
                     /locus_tag="HA345_00995"
     CDS             complement(6174..7019)
                     /locus_tag="HA345_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83962.1"
                     /translation="MAVDAGAVLISAIMAGAVAILATLVIERWGGALGSIVAIPTTIV
                     PAAIGIWHGSASVEAHADAMSMVPIGMLLNILFLGAWRVLPPRLEHRWSGGSLVTLVA
                     VLSVAVWLVAAGVSTVIVSNTLDSIAPLWIGSLATMLGFGIGLRALKDAPAAPAGHNA
                     VHPFSVLMRGIAAAAAIGLSVLIAGMGLPFISGVISVFPAIFLTTMVSLWIAQGSEVP
                     VGATGPMMLGATSVSVYSLIAIGSFPEYGPWMGSALAWFGSVILYSLPIGFWTNHRIS
                     HGAND"
     gene            complement(7021..>8479)
                     /locus_tag="HA345_01000"
     CDS             complement(7021..>8479)
                     /locus_tag="HA345_01000"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH83963.1"
                     /translation="GHGTHCAGITAGTGAPDMVHVGVAPQAQLVGVKVLDSGGSGSFS
                     TVMAGMEWTVDKKHVFNIRAASMSLGGPGAIEWTSSEEESVNRMGNRMMAEGIALFIA
                     AGNNAVSAQIGTPGSAEDVITVGALDKSGSIAVYSSQGPTEEGRIKPNIAFIGSNVNA
                     PDYNTGTGYVSLSGTSMATPGAAGLAALMYQANPDMSPFDVRNIMQETAIYRPCHYDF
                     ANEPCAEDLIPKNRQNNVYGHGETRAPESVAEAANYVFGLDMGMNISLQYEPTMDDKV
                     HVGPGEGIDYSLTGDPVEVQWRTWDMRDTWMDLVEHDMGEEEVTITHTMLVDRLNELP
                     DVEIEGNHTILLRSIRGPNASANMVTHIHVMGSEPLIDVEGGSGQGMVAALSFVVLLL
                     AGVIGLLMFILYRNSTLDSNHRIGDFSAKVQDSSSHDANLLDTFQTKLNNSQTGSVAD
                     YASMTVAELKDVLKSKGLPFSGRKAELIERLTNEK"
     assembly_gap    8480..8781
                     /estimated_length=302
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8782..>8949)
                     /locus_tag="HA345_01005"
     CDS             complement(<8782..>8949)
                     /locus_tag="HA345_01005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83964.1"
                     /translation="DTGIDSDHAGLDDLDDRNETNDPKVIAFYDPVNTPDLSNGTEVK
                     AYDDQGHGTHCA"
     assembly_gap    8950..9265
                     /estimated_length=316
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<9266..9802)
                     /locus_tag="HA345_01010"
     CDS             complement(<9266..9802)
                     /locus_tag="HA345_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83965.1"
                     /translation="MSTGRPHILRFILFLTIAVMLTPIAAPMAMESTTESHAGEAPWW
                     ETTNMDQDRDRIHDAVWMAVAGMSGGDWVDENGRIGVIIDFDHTPIAGDEILLSESVD
                     IVISWRYHLIDSIAGRIAVGDLFDVLDVPGVVFVELDGRLEVQMEDVVPYHGVDTVWD
                     DTSYTGAGSVVAIIDTGID"
BASE COUNT         2568 a         2411 c         2156 g         2088 t
ORIGIN      
        1 agaactccta cttcaacggc atgaatgctg tagtagatgg aactgcaact gccatggagg
       61 gagataacca tactatctca ttctcggccg ggtcaagtga cacatggatt gaattcacag
      121 gagcgtccgt gtatgagatg atactctcat ccgaaattcg aattgattac cctggaatca
      181 agcccacgga taccatcccc atcggagaca tacctcatga gaactggatg gtaaacgacc
      241 cagggacatt tgacatcgag attcaaggta cgatgaatgc caatggagca catatctacg
      301 gagcgaaaat caacgtgttt ggttcgctga accttagcac cacagacatt gtcagatcca
      361 ctccgattct agcagcagat agcgcgagta tcaagatgaa tgcagtcgac atgaaggaca
      421 gtcgagacga tcatcacatt actgcaggaa tccagacggt gattgacacc tctacatcga
      481 cagttcatgg cacacttgtc gatttctggg agcgccagtt agaacagaaa atccagttca
      541 gagctaacga agtgattgtt actatcgctg attttggtta tcctccaagt acaaccaatc
      601 cgatacctac caacgaacag ggcctcatga ctctcccctt gaggactgtt gagattggat
      661 tcgcagacgg tacagtatgg aatgaagatg ctacgattgt gattcaatcc tacaaaaccg
      721 catggaacgc tcaacttgga gattacggat caccctcgaa tctaccgatt gaaactacca
      781 ccacctacca atccgatgta ttaccaatgc taaccattga ttccatcgca tctgaggaaa
      841 ctagtgtcgc taccgatggc cgagtaaaga tgaatgcgac gattacgaac tctggttcag
      901 gagatgcaag aatcggtctc gaatgtttca ttggtaacgg ttcggcagct gatgtgggag
      961 gatatccagt ccttgaaatt cctggagatt caacgaaatc tgtagaattc acttggagag
     1021 gagttgctga aacaggtgac caaagtatca cctgcggagt aatacaaccc gctcaacttg
     1081 taatcgaagg tgcttatgga ggactacctg tcgattccga atcagtattt tggtctgagc
     1141 ctgtggctga gaccgagggg ctaggtatgc tcccattgat caccgctgta ctagttggtg
     1201 cagtactagt gggaatcgca gcacttcagt actcggctaa cctccagaag gagcgtgatg
     1261 aaagtaagaa ggatggacac acagaggaag agggaatgag ctcaccccgc actgtaaatg
     1321 taacttacaa catccaagac agcgtagttt ccggcgacct agaggtcaca ggaagtaagc
     1381 aaagagatgc tgaagattag tcagcaacct gccaaccagg tctcacttcc atcttgcgat
     1441 tggaatgaat gctcactcga cgctgtcacg gtctcctcgc cccagaatga atcctgcgtg
     1501 atagccacgg tgaaagtata gcagcccttc tcgtcaccct gccacatgtc acgggacacg
     1561 atggagaggg tttcctgctc agcatcccct tcgagttgaa ggatagcata cccctcatct
     1621 cccataatcg cagtaccatt cccatagagt ccaccttcgg aatcccatga ggcatcagtc
     1681 atgctaacct tcacagtggg gtaagttacg acagttccac ttggaccagc catagatgcg
     1741 gtgaaattga agttcgccca tggaagtgcg agcggtgaat tttgcgactc gaggcctgcc
     1801 cagacgctta atgatacacc acttacacaa cgtacggagc catcatcaca actttgaccg
     1861 gttccttctc caatgaatac aggagtgaca tcagtctgcc cctctgtcac agttcgcgtc
     1921 atgaagttcg aatcgagtgt attactccag gtctgccccc ctacgccgat atcaatcgtg
     1981 tattctcctc cagaagatcc cagagcattg ccggaatata ctgaatcaac agggattgtg
     2041 aataagccat agtcaccaag accatcgctc ttatcgatag agaatgcatg agtagaatcg
     2101 tatactgtcg caccgttacg aacgatactg acgactgcat cgtgacttcc actcccaccg
     2161 ttttgacgaa tcttaacctc aaactccgag ccatcctcac tagcctcgat accaccgaaa
     2221 gacattgatc cagtgagaac ggttccaaga agggttggtg tgacggcgag catgagcgca
     2281 acaagaatga cgattgcagc cgacataatt gctgtagggc cttgttctag aggattctgc
     2341 aggcctaacc agaaccaact agcaccggct ccaccgagta aaatcagtgg cattagagcg
     2401 ttcaacgata gggggatata ttcgtcgaac cacattacaa ggaaaaacgg gacgataatc
     2461 atcgctaaga ttgcagtaaa tgtccggccc aaaagaccct cgattgaatc ccctacatct
     2521 tccgatattg gggtcgcaga gacagtagtt tcctctacct ccaactctgg ttcttcatcc
     2581 gcttcaacct ctactctgtc taacaatcca cctgacatta gatattagtc gcggctcgga
     2641 ggttatcaaa ccgttgacta aacagtcagg atgaagcagt ttggcccgcc taccgctttg
     2701 cgccgaacct agagcatcaa aatcgggaga tcatcgtcat cttcggaaat ctcctcatca
     2761 tcgctatgtc ttcgagcaat tgccgctgca gctagtccaa gcatcatcac tgatccaatc
     2821 atttcgaagc cggggagata tacaccacgg atgtaaatcg taaccatctg aacttggtaa
     2881 ttaggcacgc cttccgttcg aactgaataa tcactggttg cttggaactg caactggtaa
     2941 tagatatcgg accatccctg aacctttgga gtacgcataa tcacacgcac attgtccgga
     3001 ggagcctgtg cttcaatctc agtggaaacc tgcgggagcg atatctggaa acctgcatcc
     3061 tctaaatctt cacgattcgc aacatcgata ttgaatcgat catatgcatt accgtcattg
     3121 tagaccttga aattgaatgt gtaatccacc ttaggtcgga gttgcttgaa tggttcatct
     3181 gcttcaacac gaagacgact gaactgcttg attacgacga gtacggaggt ggtcttcggg
     3241 gtgcaggttc cacaagggac accagtcgca gtgtcaacac gggctgtaat ggatacagta
     3301 cgctggccct cagccattct ttgatcacca cggactgata cttcgaaagt cacttcttgg
     3361 cctgcgccaa cagtaactgt gccaggggca gcgtaggcta gcccacctgc tgtcacagta
     3421 attgccacgt tctcagagta cgcagtagga ttgttgagag tgcaataggt ggtgccggtt
     3481 cgagtcgcac cagggtatac ctcgattggg aagttcgcag gagagcaaac aataccaatg
     3541 tcaggattag gagatgcctg tgcattgacg gtatatgcgg cacctaccca catgctgaga
     3601 gcataaatcg tcaggaagac aataacagta cggactgact tcattacgga cacctacggt
     3661 tttccctacc cggccccgta ttaagaggtt agcccccgga tgaacacagt aagaagacat
     3721 tcacatgaag tcgtcaagat cgtcaaagtc atcgtattca tccacctcac tccattcatc
     3781 ttcctcacta gggccgcggg ataatcgacg acgtcgagcg gaacggacac ccatgaacac
     3841 aatgagaaag acgaggatta gccccgcgac tgaaatccca cccattacga gggccgtctc
     3901 atcagaacca agggtgacaa ggggctcagg agggccttct gcttgaatga tgaatacctc
     3961 catcacctca atttcagggt cgaaggagga acggatatac acttgaatct cgaaagtgtc
     4021 agtcggaata tcccctccag tcatgacagt aaagttgtga ggtaccttct cttgggggtc
     4081 aagatttcct gtactctgta tatcgaaact aaaaccgaga gattcgagac ctgactggtt
     4141 ctcaatctca atctcaaaga tatcctgacc attcccgaga ttctggagat caattaccac
     4201 ttcagcagat tgatcaacgc cgagattcaa ttcccccgcc cgagtctgtg cagaaatgcg
     4261 tgcaaactgg actacctcca catccacatc agcggaatcc tcggggcatc cgaatgtgca
     4321 aggtacacca ttgacggtag taactgaggc attgattgct acaacaatca tagaaggaga
     4381 catcgtggat tctccacgta aagcaacctg gaatgtctgc tcatcaccgg cagcgatggt
     4441 aactgaacca ggagcagcat tagagaggct tcccgaggag acggtaatat cggctgacat
     4501 agagtgaaca gacggattgg ataaagtgca atccacatta gctaccttac tagaaccagg
     4561 atgaacctca atcgtaatcg attgttgatc gcattccaga acaatactcg gcagggggcc
     4621 ttgggctgac aatgaaggtg ttgacaacga aattaaggcg accatacaga gcaaaattgc
     4681 ccaattcatc cgccccctca tgctacgacg agtaggactt gttttgaagc ggtttcgata
     4741 caaaaggtgg acccggcagg atttgaacct gcgaccaccg cgttatgagc gcggcgctct
     4801 aaccaactaa gctacgggtc cgggtggggc ctcctcggcc gccatgatga atctgttggg
     4861 tattcacgac aaggtatttc ggacaatttc ctcacaggct tgtcgtacat ttacagggac
     4921 gaaaaccata gtatcgtgca ccgtcttgga tatcgcggcc gctactgcag atacatctgc
     4981 gatatccctc ccatctgtca aacggatacc gcccatgtat gggcggtatc cggtattgtc
     5041 cacgcgcgcg aggagaaggt cgcgcatcgg gtcatgacct gccgcagtaa tctctgctga
     5101 gagtggtatc atacatcgtt ggagtattcc tgacgtgatt cctggaattc gcaaccgctt
     5161 atggaatgaa tcacgtgaca acaaacggtc gacccaatga gaaagtaatg gatctttgtg
     5221 accatgccat gaacctacag cgcttgaaac aactccgtca tctaaacgca aataatcctc
     5281 tgaactaaga tcatcatcga gcagcatgga ttccatagtt cgttccaaag ccaactcacc
     5341 cttcgatgct aattctctag ccctccggag gagcagtttg tgatactctg acgtaaggat
     5401 attcatcttg tggaagtata caagatcgta catgtgtaga cgtgtgagta gatacgattc
     5461 aacggcatta acgccctcgg gacgaagccg aagtgaacca tcctctgcaa tgcgcaaagc
     5521 cctgaatata cgctgcacat cgaaggtccc tacatctgcc ccagaatgat gttgatcgcg
     5581 gagaaggtag tccatcctat ccacgtccaa ttggctgctg acaatctcat agagagcgat
     5641 aggatgcact cgacctgcat agatatccat caatcgtgag atcccacgtt cgccaactag
     5701 ttccactagg gcttgacgaa gatcattctc tgaatcctca aggattaatc gggcccactc
     5761 ctcgtgtccg cggaaggtac ggaatatttc acgatcctct aacatgtgag agaaaggagg
     5821 atgccctatg tcgtgcaaga gggcagcgta accaactaac tcagcatcct catcagatat
     5881 gacgccagga tgcaaatcac gtaggcgaga aagaagttgt gttgaaaggt gatatgcgcc
     5941 aagagaatgt gcaaatctcg aatgtgtcgc acctggaaac acgaggttac aagtggaaag
     6001 ctgcttaatc cgatgcaggc gctggaaggt tgcagtatca atgagagcct tgacttcatc
     6061 aggaatccgg atatcaccat ggagagggtc gcgaatcacg cggaccttgg ctgcgcgagc
     6121 ctcaacctca tcgccacggg gtcccataca aagtgaagag acagacaaat gattcaatcg
     6181 tttgccccat gagatattcg gtgattagtc cagaatccaa ttggcaaact gtagagaata
     6241 actgacccaa accatgcgag ggctgacccc atccaaggac catactctgg gaaggatccg
     6301 atagcaatta ggctgtatac agagacacta gtggcaccaa gcatcatcgg gccggttgcc
     6361 cctaccggga cctccgatcc ttgtgcaatc cacaaactaa ccatagtcgt cagaaatatc
     6421 gctgggaaaa ccgagatgac cccacttatg aacggcaaac ccatgcccgc aatgaggaca
     6481 gaaagcccga ttgcggctgc tgcagcaata cctctcatca gaaccgagaa cggatgtacg
     6541 gcattatgcc ctgctggagc cgctggtgca tcctttaacg cacgaaggcc gataccgaaa
     6601 cccagcattg tagctagaga acctatccag agtggggcta tcgaatcaag agtgtttgat
     6661 acgataactg ttgagacacc tgcagcaact aaccaaactg caactgaaag aacagcgacc
     6721 aaggtgacaa gcgaaccgcc cgaccacctg tgttccaatc gaggagggag tacacgccat
     6781 gcaccgagaa aaagaatgtt gagtagcata ccaatgggaa ccatagacat cgcatcggca
     6841 tgagcctcta cagaggcact tccatgccat atcccaatcg cagcaggaac tatcgtagtt
     6901 ggaatagcga caatgctccc gagagcacct ccccatcgct caatcacaag cgtcgctaga
     6961 atggcgacag cacctgccat gatagcagat atcaggaccg ctccagcgtc gacagccatg
     7021 tcacttctcg ttagtaaggc gctcaatcaa ttccgccttc cgcccggaga aaggcaaacc
     7081 cttggacttg agaacatcct tgagttcagc aaccgtcatt gacgcataat ccgctaccga
     7141 acccgtctga gaattgttca atttagtttg aaacgtatcc agtaaattcg catcatgtga
     7201 agatgaatct tggactttag cactgaaatc accgatacgg tgattggaat ccaatgtcga
     7261 attccgatag agtataaaca tcaggagacc aatgactcct gccagaagga gaactacgaa
     7321 ggatagagca gcgaccatcc cttgtccaga gcctccttca acatcaatta gaggctcgga
     7381 acccataaca tggatgtgag tcaccatgtt agctgaagcg tttggaccac gaatagatct
     7441 aaggagaatt gtgtgattgc cctcaatttc gacatcaggg agttcattca accgatccac
     7501 gagcattgta tgtgtgatag taacttcttc ctcccccatg tcgtgttcca ccagatccat
     7561 ccaagtgtcc ctcatatccc aagtccgcca ctggacctcg acaggatcac cagtgagcga
     7621 gtaatcgatg ccttcaccag gaccgacatg gaccttgtca tccatcgtcg gctcatattg
     7681 caacgagata ttcatgccca tgtcgagtcc aaatacatag tttgcagcct ctgcgacgga
     7741 ttcaggcgca cgggtctccc cgtgcccgta gacgttattc tgacgattct tggggataag
     7801 atcctctgca caaggctcgt tcgcaaagtc gtaatggcac gggcgataga ttgcagtttc
     7861 ttgcataata ttacggacat cgaaaggcga catatccggg ttagcctggt acatcagagc
     7921 agcaagtcca gccgcaccag gagttgccat actagtcccc gacagggaca catagccggt
     7981 gccagtgttg tagtcaggag cattcacatt tgatccaatg aaagcaatgt ttggtttaat
     8041 gcgcccctct tcagtcggac cttggctaga atatactgcg atggagccgc tcttatcgag
     8101 cgcccctacc gtaattacgt cctcagctga accaggcgtc ccaatctgtg cggaaacagc
     8161 gttatttccg gctgcgatga acaatgcaat accttcagcc atcattcggt tacccatgcg
     8221 attaacagat tcctcctcag aagaggtcca ttcaattgca cccggtccac caaggctcat
     8281 acttgccgca cggatattga aaacgtgttt cttatcgacg gtccattcca ttccagccat
     8341 gacggtagag aaggaaccag aaccacctga atcgagaacc ttgacaccta ccaactgcgc
     8401 ttgtggagcg accccaacat ggaccatgtc tggagcacct gtaccagctg taatacctgc
     8461 acaatgtgta ccatgtcctn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8761 nnnnnnnnnn nnnnnnnnnn ntgcacaatg tgtaccatgt ccttggtcat cgtaggcctt
     8821 aacctcagta ccgttcgaaa gatcaggcgt gtttaccgga tcataaaagg cgattacctt
     8881 tggatcattt gtctcgttgc gatcatcaag atcatcgaga cctgcatgat cagaatcgat
     8941 acctgtatcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9001 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     9241 nnnnnnnnnn nnnnnnnnnn nnnnnatcga tacctgtatc gataatagcg actacggagc
     9301 ctgcgccagt gtaactagta tcatcccata cagtgtctac accgtgatat ggcacgacat
     9361 cctccatctg aacctcaaga cggccatcaa gctcgacaaa gacgaccccg ggaacatcaa
     9421 gcacatcgaa gagatcaccg actgcgattc gaccggcaat ggaatcgata agatggtatc
     9481 gccacgagat tacaatgtcg accgattctg agagaaggat ttcgtccccg gctatcggtg
     9541 tatgatcgaa atcgataatg acaccaatgc ggccgttctc atctacccaa tctccaccgc
     9601 tcatcccagc gactgccatc cacactgcat cgtggatacg atcacgatcc tgatccatat
     9661 tcgtggtctc ccaccaaggc gcctccccag catgagattc cgtagtagat tccatagcca
     9721 taggtgctgc aataggagta agcatcactg cgatagtcag gaacaagatg aaccgaagaa
     9781 tatgcggccg gccagtgctc atgctttggc cgactcaaaa cccccaaatg aaacccgcgc
     9841 a
//
LOCUS       DUKB01000026           15496 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_24822, whole genome shotgun sequence.
ACCESSION   DUKB01000026 DUKB01000000
VERSION     DUKB01000026.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 15496)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 15496)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15496
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_24822"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..246
                     /locus_tag="HA345_01015"
     CDS             <1..246
                     /locus_tag="HA345_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994132.1"
                     /note="eIF-2B; functions in the early steps of protein
                     synthesis by forming a ternary complex with GTP and
                     initiator tRNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HIH83966.1"
                     /translation="DANHVYQYLLGELGTSGTKESNRVMFKGRIPPKRIRGRIVNYVK
                     AFILCNQCNAPDTHFVKENRTTLMKCQACGATRPIRL"
     gene            complement(248..1201)
                     /locus_tag="HA345_01020"
     CDS             complement(248..1201)
                     /locus_tag="HA345_01020"
                     /inference="COORDINATES: protein motif:HMM:NF015000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HIH83967.1"
                     /translation="MEKEEPTSALDRRRKIALGIGIALLLLFSGPRLDSDLGNEWIVG
                     DDRALIIAHRGGADIFPENTMVAFEGAAIIGVDMIEMDFQLTSDNRLITMHDDTVDRT
                     TNGTGPVIDMTLEEILALDASAKFSNLTGENPWNGSHLPPATIEEVLDRFIDSPHRLS
                     IEIKNEGEAGEISAEIISQEIKNRSMQSRIEVGSFHIDSIQAFREISGGEIATSGVES
                     EIRKCILIPMLQLDRWWLDPGPASVLQIPTEGAGFNLATKGVVNRAHQHGQAVQYWTI
                     NDKEMMEHLIDIGADGIMTDNPILLRQTISDAGYDLPEPWT"
     gene            complement(1225..2253)
                     /locus_tag="HA345_01025"
     CDS             complement(1225..2253)
                     /locus_tag="HA345_01025"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019845.1,HMM:NF024989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HIH83968.1"
                     /translation="MSENVRLAVYPRKGGPESITVVEAELGKLAPNQIRIDVHYAGIN
                     FADLMMRMGLYGAAPPFPFTPGYEVSGTIIEIGKDVRNRSVGDRVVAMTRFGGYSTII
                     DVFPDQSFILGPKIDLDAAAAMPVTYTTAYHMLVHLGNIREGDTVLIHHAAGGVGTAA
                     AQIAAAKGASLIIGTSSAPKKEFVESMGMHHVTRGEDFIEQCKALTDGRGVDHALDPV
                     GGRHLLKSYRALAKGGKLYAFGGSSAVPWKRPNLFAALWMWWRLPRFDPLRMMNSNKA
                     VFGIHLGTWEKEDILQEQVKELIAMHKEGVINPVVDSIFQLSDVAKAHTYMHDRKNRG
                     KILLDCRD"
     gene            complement(2301..2879)
                     /locus_tag="HA345_01030"
     CDS             complement(2301..2879)
                     /locus_tag="HA345_01030"
                     /inference="COORDINATES: protein motif:HMM:NF013077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83969.1"
                     /translation="MSDVQSNLTSRRTIYEYLDQVVDDTILDKAFIAANNAPSHKQTN
                     PWRFYLLGRETRTNLLPDVIELARQKAKSNGIEDFEKAEKRAISKIMDPPVLVAVTSK
                     VNSVDSFRENEDYAATVCALHNAILSLWDSGVGSQWSTGAITRHENTYTAIGISDDKE
                     RIIGFLKAGYPKKKDPRSKNKKELSEIRFYLP"
     gene            complement(2884..3213)
                     /locus_tag="HA345_01035"
     CDS             complement(2884..3213)
                     /locus_tag="HA345_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006854426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HIH83970.1"
                     /translation="MDLHEKRCIPCEGGIPPLTHEEIEPLYANLDEAWEVIDAHHLKR
                     TWSFEDFATALEFLNSAGRICEEEFHHADFELSWGRVQAVIYTHKIDGLTESDFILAS
                     KIDLLDR"
     gene            complement(3216..3647)
                     /locus_tag="HA345_01040"
     CDS             complement(3216..3647)
                     /locus_tag="HA345_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83971.1"
                     /translation="MTPDYPNWAMVELDKMGITDVSDFQDILYGPIADRKAGLRRDDL
                     VEILLDARSINLLEIEPWIRGRLISSHKSSLEIIDSEGRFRALAREVIVEIRLITHTR
                     PPYIDDEELMTFERSEARRRNEIQEQVEKRASNSHENHQWG"
     gene            3758..4813
                     /locus_tag="HA345_01045"
     CDS             3758..4813
                     /locus_tag="HA345_01045"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014036.1,HMM:NF037134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HIH83972.1"
                     /translation="MPAVQWRRIPTVLQPDELMDKAFSAASKKANLVDDPDKYHRVRK
                     QMLAMIQSSCDVLETTLKKWVSRWPSLDQLSPFDAALIDAAVGRDPFKQNLGGVQWAA
                     NQINRMSREGQSRMAKHRSIEEFHDRRRHVYGRCASILDQIGPQLAWLNDARNIMRRF
                     PTIDPLDPCIVVAGAPNVGKSALISALSSGEPEVNAYPFTTKRLHVGHFEHRRRIYQM
                     VDTPGLLDRPMVERNDIEMQAIAALENVGSIAVYLMDPSESGGNPMHTQENLLSEVTN
                     MLGDTPVLVVDGKMDLLGLTEDDSVNPDSGHIAISATEGWGLEALKAILIEKIGADNI
                     DDPLELPDGWHRKNRPE"
     gene            complement(4988..5587)
                     /locus_tag="HA345_01050"
     CDS             complement(4988..5587)
                     /locus_tag="HA345_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83973.1"
                     /translation="MTSIVMRILSLFPMIVAIICGILLLASLIGIDAPEQSEQVPLIP
                     CGVPGFQSCPVGMTSDNLTIPPGFLLLDIDATIEWERPDVSWIGLVDASAADTCPPDD
                     NGLTDCEASEFDFLAGGNGTDGMFEYSFAPGDTRFVTGGNPGSADLSSQMVTINIECS
                     LTWWVEAILFLAGAGLLGSAFDMNFPLVSSLIGRFGKKV"
     gene            complement(5584..5871)
                     /locus_tag="HA345_01055"
     CDS             complement(5584..5871)
                     /locus_tag="HA345_01055"
                     /inference="COORDINATES: protein motif:HMM:NF021415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2116 family Zn-ribbon domain-containing
                     protein"
                     /protein_id="HIH83974.1"
                     /translation="MAKGSKIAERIRSNVDRVRKQAKTDLKSVPPHRHCVVCRAVIRV
                     DSDPPICSNANCEAKHSKNERSRKQLSILMYIFPAIAVLLVILNVTGGGAV"
     gene            complement(5875..6579)
                     /gene="pyrH"
                     /locus_tag="HA345_01060"
     CDS             complement(5875..6579)
                     /gene="pyrH"
                     /locus_tag="HA345_01060"
                     /inference="COORDINATES: protein motif:HMM:TIGR02076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HIH83975.1"
                     /translation="MAVRVAALGGSLLRPEVEDRQAWLRSLSEAVRDITTRGIRLVLV
                     VGGGAPAREGIQLAKPLIGEDVAALDRIGIAATRLNARIVSEAISCAGIEVPNTIPES
                     IENALLLAAKNTVVIMGGTVPGHTTDNVAITMACALEADRCLIATNVSHVHSSDPRNN
                     PEAVRFEEMTHDELREIVGPPIHHSAGGSGVIDPIGADRARKAGLPLAVLDGRHMERL
                     HACLCGEAFEGTNIEG"
     gene            6692..7945
                     /gene="prf1"
                     /locus_tag="HA345_01065"
     CDS             6692..7945
                     /gene="prf1"
                     /locus_tag="HA345_01065"
                     /inference="COORDINATES: protein motif:HMM:NF003081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HIH83976.1"
                     /translation="MSDDLEMQQRRLRLKNALQELEGMRGMGTELVSVVVPPDRQISD
                     VRGQLSQELGQAQNIKSKSTKKHVTDAIESAISTLNRYPTPGNFGLALFVGHVIVGNN
                     KTRLMNIVVDDPPDSIQSFRYRCDSTFELTQLQEMLIDRTSYGLFVIDRGECAYGIAT
                     GSRIHCQEEMQSNIMGKHRQGGQSAQRFERLIEEAAHKFFKKSTELACECWLQHLENI
                     QGIIIGGPGATKDYVVKHGYFHHEVAKKIREPFFDVGYSNESGLRELVQRAGSLMDRI
                     ALDEERGIVDRFLQELNQAHPKATYGEILIRQALDAGAVDNLLLSEGLRKVRSAYRCQ
                     LCKHEWKRTDDKGSPLPDCASCGASSDRVRLDDDATETLVDELTALAAHTSAKVSIIS
                     GDSEEGQTLLDAFGGMGAILRYAWS"
     gene            7995..9686
                     /gene="argS"
                     /locus_tag="HA345_01070"
     CDS             7995..9686
                     /gene="argS"
                     /locus_tag="HA345_01070"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HIH83977.1"
                     /translation="MSTFGIEESDWLSLLGPSTVSDHGDLAMACHSLARVLRKSPVDI
                     AENICTAITPHLEGVAQVTSMNGFVNIKATNSWLSKRVTEVASDPRLGVIKSEMPRTV
                     AIDYSSPNVAKEMHVGHLRSTVIGDALARILTYQGHTVIRENHIGDWGTPFGMLIEHL
                     LDLGEAEAGDELGVGDLDSFYKAARGKFDDDSDFAARSRARVVLLQSGDEETLHLWKV
                     LVNESTRYFNEVYRLLDVLLVDGDLMGESAYHPLLSSVVSRLSDAGLLEESGGADVVF
                     PGGHLNREGEPLPLIIRKGDGGYNYATTDIACIIDRTERLNADDLLYVVGTPQSRHFE
                     MVFEVCRMAGLLGEEHRSEHVNFGSVLGSDGKVLKSRSGSAVKLVDLLEESISRATAV
                     VDEKNPGLEDGEKRKIARAVGIGAVKFADLSNDRTRDYVFDWSKMLSFEGDTSPYLQY
                     AHARICSIFTKANDSDWLDYPININDHYEARLARSLLSYRDSFESSARDLMPNRLCTH
                     LLSLSSAFTSFYENCPVLIAEDPEVRHGRLRLCDATARSLKIGLSLLGIEAPERM"
     gene            complement(9687..10193)
                     /locus_tag="HA345_01075"
     CDS             complement(9687..10193)
                     /locus_tag="HA345_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83978.1"
                     /translation="MEDTGHGMVARGDRVLTAIAIDREAREEVLAMMIEDEDLEMVIR
                     GFMADAESTDIIEIRIDSWTVGTIGPDAREIERTLRRDACPVCTRTSFWIEDDEVRAG
                     CHDRLCKAWIEPNSVDEDRIDCGWPSAQRTRACSSFGEAKRVLTQMRAEAEANTVETT
                     DIVDASEF"
     gene            10280..10741
                     /locus_tag="HA345_01080"
     CDS             10280..10741
                     /locus_tag="HA345_01080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HIH83979.1"
                     /translation="MVAIGDKAPDFTLKDQDKNDLTLSSYKGRRVILSFYPAAFTGVC
                     TNQACTVNDAMSSLSASDCDVIGISVDSPFSNKAFADANGITYPLLSDVHREVITAYG
                     VTFDDFAIKGYTVAQRSVFVVESDGTIGYAWYSDNPGMEPNYEALFAYVGA"
     gene            10935..12137
                     /locus_tag="HA345_01085"
     CDS             10935..12137
                     /locus_tag="HA345_01085"
                     /inference="COORDINATES: protein motif:HMM:NF028263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83980.1"
                     /translation="MNLVLDGANIARQGVDSSGNGTQLRAALDRLLADGHTVYPVIAQ
                     FRMSGKRAFPNMEWVNEYREHPSVHFVQSPSGTDDDAFILDLAIQIKGVIVSNDLFRD
                     HKERLGKDSARYCGSKATHRMMYSIAGELFLPDPKFKMPVEEAVEVQPPAVEVTAPVK
                     EKKGSPKQGSSSSKSRSSNRQPSKTNRSHRISSASVRSSILQHGDLPMSVQKLSTYLP
                     KMIEKATGRKMSKAEIRSEAGFGNRSWIEIFSGMSPELVIDRSGDTPMVKAGAMKAKK
                     SGSSNRNRGGNRKSAGDSESARVRNQDALSIVFKEIIEDGRYRLDSKGGLMSRFLPWM
                     KVEERMILSWSYVCQKYLKRTNVRLARMNSADFFELLSSIPWPLGNESGKIIRHHIDE
                     NELILWRG"
     gene            complement(12138..12431)
                     /locus_tag="HA345_01090"
     CDS             complement(12138..12431)
                     /locus_tag="HA345_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010178833.1"
                     /note="rotamase C; accelerates isomerization of the
                     peptidyl prolyl bond; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HIH83981.1"
                     /translation="MKQARASHILVDSKGQAMTIYKQIMESKKPFKEFGKRARKHSTC
                     PSRHKNGDLGNFGRGQMVAGFEMEVRKMEIGTMSEPVKTRFGYHLIWLHERID"
     gene            complement(12436..14235)
                     /locus_tag="HA345_01095"
     CDS             complement(12436..14235)
                     /locus_tag="HA345_01095"
                     /inference="COORDINATES: protein motif:HMM:NF016289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HIH83982.1"
                     /translation="MAEYQEWTVARLKEELKSQGLSQSGKKADLIQRLLDGGAKKDSE
                     IPSSYDQWRAEGNIPKNRIVLDHTPIENGEWIGSGERPDPRAMEDWNALAWWEKLVVH
                     AMGKGINAIVMAFLIIVSVTTYNFIFVEEVPDYELIDFDQDRARGYAQTLVDLGHPEW
                     GGRMSGTVEEANGAEAIKQNMTEAGMGATVQTFSVPMFEIIAEPTMSICEPGPAPIIG
                     TVDPCGIADIGAEVTTFTHREDFVIQGYSGTMQLGYAQDAELIDLGNGSEDADWASAS
                     GAIGMVWGQGDVSGNTDLFLRAQENDLFALILVNMKQNCDELVSGDCVPYFKSVDVSR
                     FDTMPAQIAFVMVSKSVGEILQDEVINGTQRFQIDVRVDNEGNRDVSVTCGVIPGATE
                     DMIIFGAHHDTVYNGPGAIDDTSGTATVIELAQQFGALYDTLGEPEYTMKFCTWGGEE
                     QGLFGSSAWVEAHQEELKEHLRLYVNLDMSHVDAERNYGVTLFGNSEEDVQHIANIHW
                     KFTQENEALATKYPADIRLLDSEEMPYNSDHAPFVYEIDPAGNEYGRALVCYGSGSAE
                     YHTYLDTMDRFNEESLAISGIIYGSYARWLAWG"
     gene            complement(14297..14866)
                     /locus_tag="HA345_01100"
     CDS             complement(14297..14866)
                     /locus_tag="HA345_01100"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005215508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HIH83983.1"
                     /translation="MGLHVIAITGASGARYGVRLIEALTSAGHDVRLIVSNAGAINLD
                     LECDITAEQLAEQYGCVLEGNQNLAAKSASGSANIDSVVICPASGTTTAKIAAGISDN
                     LATRSAIVALKEKRTLILVPREAPYATVHLENMTRISQWGGVIIPASPGFYNHPQSID
                     DLIDFIVARILDQLGIDNDLTVRWTGEEV"
     gene            complement(14921..>15496)
                     /locus_tag="HA345_01105"
     CDS             complement(14921..>15496)
                     /locus_tag="HA345_01105"
                     /inference="COORDINATES: protein motif:HMM:NF024221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HIH83984.1"
                     /translation="FVVNGIFYIVLLLSWFVPSLRNLFSNPVFVLGYASAQGFLLGGT
                     TFMIENSMGAAYSGISIQAFLITAMIFGGMLGIYRSGLINVNDNFRIALSSAVVAIIM
                     IYLFSFILGIAGIEVPYIHGNGAIGIGFSVLVIGIGAMMLAADFDFVERGVENGAPKE
                     MEWRAVFGLLVTLIWIYWETLRLLMKLASRR"
BASE COUNT         3808 a         3725 c         3647 g         4316 t
ORIGIN      
        1 gatgctaacc acgtttacca atacttgctt ggtgaacttg gtacgagcgg cactaaggaa
       61 tccaaccgtg tgatgttcaa ggggaggatt cctcccaaga gaatccgtgg tcgaattgtg
      121 aattatgtga aagccttcat tctctgcaat caatgtaatg cgccggatac acacttcgtc
      181 aaggagaatc gtacaactct gatgaagtgc caggcttgcg gtgcaacacg tccaatccgt
      241 ttgtgattca cgtccatggt tcaggaagat catatcctgc atcggatatc gtttgtcgta
      301 gaagaatcgg gttatcggtc ataatgccgt cagcaccaat atcgattagg tgttccatca
      361 tttccttgtc attaattgtc cagtattgaa cagcttgacc atgctgatgt gcacgattca
      421 cgacaccctt tgttgcaaga ttgaagccag ctccttcagt aggtatctga agaacagatg
      481 ctggccctgg gtccaaccac catcgatcaa gttgcaacat tggaattagg atacattttc
      541 taatttcaga ttcaacacct gatgttgcaa tttctcctcc acttatttct ctaaatgctt
      601 gtattgaatc aatgtgaaat gatccaactt ctatcctgct ctgcatacta cgatttttga
      661 tctcttgaga aataatctct gcagagatct ccccggcttc tccttcattt ttgatctcta
      721 tacttagacg atggggggaa tcaatgaacc gatctagaac ctcttcaatt gtagcaggtg
      781 gaagatgact cccgttccaa ggattttcgc ctgttaaatt tgagaatttt gcagatgcat
      841 cgagggctaa gatttcttcc aatgtcatat cgataactgg tcctgtacca ttagtagtgc
      901 ggtctacggt gtcgtcatgc atggttatta ggcgattatc agatgtcaat tggaagtcca
      961 tttcaatcat atcaactccg ataattgccg caccttcgaa tgcaaccatt gtattctccg
     1021 ggaatatatc tgcaccgcct ctgtgagcaa taattagggc tctatcatcg ccgactatcc
     1081 actcgtttcc taaatctgaa tctaatctag ggccactgaa tagaagcagc aaggcaatcc
     1141 cgataccaag tgcaatttta cgacgccgat ctaaagcgga tgtcggttct tctttttcca
     1201 tctaatcacc tctatagatt cgaatcaatc tctgcaatcg agcagaatct tacctcgatt
     1261 tttccgatcg tgcatgtatg tatgggcttt ggccacatct gatagttgga atatactgtc
     1321 aactactgga ttgattaccc cctctttgtg cattgcaatg agttccttta cctgttcttg
     1381 caggatgtct tccttttccc aagtgcctag gtgtatgccg aatacagcct tatttgagtt
     1441 catcattcgt agggggtcga atcgaggaag cctccaccac atccaaagtg cagcaaagag
     1501 attaggtcgt ttccatggca cagcggatga acctccaaag gcgtacaact tacccccctt
     1561 tgcaagagcc ctgtaagatt tgagcaaatg tctccctcct accgggtcta gcgcatgatc
     1621 cactccacgt ccatcagtga gtgccttgca ttgttcaatg aaatcctccc ctcgggtaac
     1681 gtgatgcatc cccatcgatt cgacaaattc cttcttcgga gcagatgatg ttccaatgat
     1741 taacgatgca cccttagctg cagcgatttg agcagcagcc gttccgacac cccctgcggc
     1801 gtgatggata agtactgtat ctccttctct gatatttcca agatgtacca gcatatggta
     1861 agcggtagta tatgtcactg gcattgcagc agcagcatca agatctattt tcggacctag
     1921 aatgaaggat tgatctggaa atacatcgat tattgtagag taccctccaa accgcgtcat
     1981 cgctactaca cgatctccaa cagaacgatt gcgcacatct ttaccaatct cgattattgt
     2041 tccactcacc tcataacctg gagtgaatgg aaaaggagga gctgctccat acagccccat
     2101 tctcatcatt aagtccgcga aattaatccc cgcatagtgg acatcgattc gaatttgatt
     2161 tggtgctaat tttccgagct ctgcttcaac cactgttata ctctcagggc caccttttct
     2221 ggggtaaacg gctaatcgaa cattttcgct catctcaaat catctccttt gtttctatca
     2281 atatctattg ttgtaatcga ttagggcaga tagaatcgaa tttctgaaag ttctttctta
     2341 ttcttacttc gtggatcctt tttcttgggg tatcctgcct tcaaaaatcc aataattctt
     2401 tctttatcat ccgagattcc tatggctgtg tatgtgtttt cgtgtcttgt tattgcccct
     2461 gtactccatt gtgatccaac acctgaatcc cacaatgata gaattgcatt gtgtaatgca
     2521 catacagtcg cagcataatc ttcattctcg cgaaaagagt caactgaatt caccttggag
     2581 gtaactgcca caagcacagg tgggtccatt atttttgaaa tcgccctctt ctcagccttt
     2641 tcgaaatctt caatcccgtt tgattttgct ttctgtcttg cgagttcgat tacatctggg
     2701 agtaaatttg ttctcgtttc tcttccgagt aaatagaatc tccaagggtt cgtttgttta
     2761 tgcgatggcg cattattcgc agcaataaac gccttatcga gtatcgtgtc atctacaacc
     2821 tggtctagat attcatagat ggtccttctg gaggttaagt tactctgaac atcactcata
     2881 cgattaccta tccaaaagat cgattttgga tgcaagtatg aaatctgatt cagtcaagcc
     2941 atctattttg tgagtgtaaa tcactgcttg gacgcgcccc caactcaatt cgaagtcagc
     3001 atgatggaat tcctcctcgc atatgcgtcc agccgaattc aaaaattcga gtgctgttgc
     3061 aaagtcctcg aaggaccaag tacgtttgag atggtgtgca tcgatgactt cccacgcttc
     3121 atctaaattg gcatatagcg gttcaatctc ctcatgtgtc aatggtggaa tcccgccttc
     3181 gcaaggtatg cagcgcttct cgtggaggtc cattctcatc cccactggtg gttctcatgg
     3241 ctgtttgaag cgcgcttctc aacctgttct tggatttcat tgcggcgccg tgcttcggaa
     3301 cgctcgaaag tcatcaattc ttcatcgtcg atgtatggtg gacgagtatg tgtgatgagg
     3361 cgaatctcaa caataacttc gcgggctaag gcacgaaatc gaccttctga atctatgatt
     3421 tctagagatg atttgtgtga tgaaattaac ctgcctctaa tccaaggctc aatttcgagc
     3481 aagttgatgg aacgagcatc aagtagtatt tcgacaaggt catctcggcg taaaccggcc
     3541 ttcctatcgg cgattgggcc gtagagtata tcttgaaaat cggacacatc tgtaatgccc
     3601 attttgtcaa gttctaccat cgcccagttg gggtagtcag gagtcatggc ttgcgacttc
     3661 gggagttggc tatgaaccgt cgcatcagcg attgtaggct cttccgatgc cctgccttca
     3721 agaataccta gccccacgga aggccggagg aatcggaatg cctgcagtcc aatggaggcg
     3781 tattccaaca gttctacagc ccgatgagct catggacaag gccttctccg ctgcttcaaa
     3841 gaaagcgaat ctagtagatg atcccgacaa gtatcaccga gttcgtaagc agatgctagc
     3901 gatgatccaa tcttcttgtg atgtgcttga gacgacgtta aagaaatggg tatccagatg
     3961 gcctagcctc gatcagctaa gcccttttga tgctgcgctc atcgatgcag ctgttggtcg
     4021 cgacccattc aagcagaatc taggaggtgt ccaatgggca gcgaatcaga tcaatcggat
     4081 gtctagagag ggtcaatcta ggatggcaaa acatcgtagt atcgaggagt ttcacgatcg
     4141 tagacgtcac gtctacggcc gttgtgcttc aattctcgat cagattggcc cacaacttgc
     4201 atggctaaat gatgctagaa acatcatgcg taggttccca acaatcgatc ctttggatcc
     4261 ttgcattgtc gttgctggtg cgccgaatgt gggtaaatct gctctaatct cggcgctctc
     4321 ttctggtgag cctgaggtga atgcatatcc atttactacc aaacgtctcc atgtaggtca
     4381 ctttgaacat cgtcgtcgga tctatcagat ggtggataca cccggtcttc ttgatcgacc
     4441 gatggtagaa cggaatgata tcgagatgca ggctatcgct gcactcgaga atgtagggtc
     4501 aatcgccgtc tatctgatgg acccctctga gagtggaggg aatccgatgc atactcaaga
     4561 gaatctcttg tcggaggtaa caaacatgct aggtgacaca ccagtgcttg ttgttgacgg
     4621 caagatggat cttctcggac tcactgagga cgattctgta aatcctgatt caggtcatat
     4681 cgcgattagt gcgactgagg gttgggggct tgaggcacta aaggcgattc ttatcgaaaa
     4741 aattggtgca gataacatag acgatcccct tgaattacct gacggatggc accgtaagaa
     4801 tcggcctgag taatcagggg ttgatatggc cggtatggcc gcagatggtg cagtatacat
     4861 cgaatccacc gtaacttgaa cgtagagcac tgacatcgat cgtgcgtcca catccttcac
     4921 attggactac atccatgata ctgggattaa cccccggttc ttcaacgcgt tggcaagtta
     4981 ttctgactca tactttcttg ccgaagcgac cgatgaggct acttacaagt gggaagttca
     5041 tgtcgaatgc gcttccgagg agtcctgctc ctgcaaggaa aagtatagct tcaacccacc
     5101 aagttaacga acattcgata ttgatagtta ccatttggga tgatagatca gcgctacccg
     5161 gattacctcc cgtaacgaaa cgagtatctc ctggagcgaa ggaatactcg aacattccat
     5221 ctgtaccgtt accgcctgcg agaaaatcaa attcacttgc ctcacaatct gtgaggccat
     5281 tgtcatctgg tggacatgta tctgctgctg atgcatctac gaggcctatc caagatacgt
     5341 ctgggcgttc ccattcgatt gttgcatcga tgtctaggag taaaaatcct gggggaattg
     5401 taagattatc tgatgtcatg ccgactgggc aggattggaa accaggtacg ccacaaggaa
     5461 tcaatggtac ttgctcactt tgttccggtg catcaatacc aatcaaacta gcaagtagta
     5521 agatgccaca gataattgca acaatcatcg gaaataaaga cagaattcgc ataacgatgg
     5581 aggtcatact gccccgcctc ctgtgacatt aagaatgact aggagtacag cgattgcagg
     5641 gaatatatac atcaggatag agagttgctt tcgagacctc tcgttcttgc tgtgtttggc
     5701 ttcacagttc gcattgctac agatgggggg gtccgagtcg acacgaataa ctgcacgaca
     5761 aaccacacaa tgccgatgag gtggcacaga tttcagatca gtcttagctt gctttcggac
     5821 gcgatcaaca ttggaacgaa tcctctctgc aatcttagac cccttcgcca tgtctcatcc
     5881 ctcgatattc gtgccttcaa acgcttcccc gcagaggcaa gcatggagcc gttccatgtg
     5941 tcttccatcg aggacggcca ggggtagtcc tgctttcctc gcacggtcag ctccgattgg
     6001 atcaatgact ccgctaccac ccgcagaatg atgaattgga ggccccacaa tttctcgtaa
     6061 ttcgtcatgt gtcatctctt caaatcgaac agcttctgga ttatttcgtg gatctgaact
     6121 gtggacgtgg ctcacatttg tggcaattag gcatcgatcg gcttctagag cacaggccat
     6181 cgtgattgcc acattatcgg tggtatgtcc tggaactgtt ccacccatga ttaccactgt
     6241 gttttttgcg gcgagtaata atgcgttttc aatagattcg gggattgtgt tcgggacctc
     6301 aattccggcg caactaattg cctctgagac gattctagcg ttgagtcgag ttgcggcgat
     6361 accgatgcgg tccaatgctg cgacatcttc gccaattaat ggcttggcta actgaatacc
     6421 ctcgcgagcg ggagctcctc cacctacgac aaggacgagc ctaattccgc gtgttgttat
     6481 gtccctgaca gcttctgaaa gactgcgtag ccatgcttgg cggtcctcga cttcaggtcg
     6541 cagaaggctc cctcccaagg cggcgacacg gactgccatc ttacattgac cgatggaagc
     6601 ggctcatcaa tccgttgcct actttcagtc ctgattcggt gaacagggtt caaatgcggg
     6661 cttcgggccc tcacgacgga ggtgcagcag gatgtccgat gatttggaga tgcagcagcg
     6721 acgcctccgc ctgaagaatg ccttacagga acttgagggc atgcggggaa tggggacgga
     6781 actcgtatct gtggtcgtgc ctcccgatcg acagatatcc gatgttcgcg gacagttatc
     6841 tcaagagctt gggcaggcgc agaacattaa gtcgaaatcg accaagaagc atgtgaccga
     6901 tgcgattgaa tcagcgatat cgacattgaa tcgttatccc acgcccggta acttcggtct
     6961 tgctctattt gtgggccacg ttatcgtagg taacaacaag acacgtttga tgaatatcgt
     7021 cgtggatgat cctccggatt caatacagtc attccgttat cgctgcgatt cgacttttga
     7081 actcactcaa cttcaggaga tgctaattga tcgcacctca tatggcctgt tcgttattga
     7141 tagaggtgaa tgtgcatatg gaatcgcaac gggtagtcga attcactgcc aagaggaaat
     7201 gcagtcgaat attatgggaa agcaccggca gggaggtcaa tctgctcaga gattcgagag
     7261 gctcattgaa gaggcagcac acaagttttt caagaaatcc accgaacttg cttgtgagtg
     7321 ttggttgcag catttggaaa atatacaggg cattatcatc ggtggacctg gggcaactaa
     7381 ggactatgtt gtgaagcatg gctatttcca tcatgaggtt gcgaagaaga tacgcgagcc
     7441 tttcttcgat gtaggttact ctaacgagtc cggactaaga gaacttgttc agcgcgctgg
     7501 ctctctgatg gatcgtattg ctctcgatga ggagcgtggg atagttgatc gcttcctaca
     7561 agagctcaat caggcacatc caaaggcgac ttatggggag attttgattc gtcaggcttt
     7621 ggatgccggc gctgttgata atttactcct cagcgaagga ttgagaaagg tacgttcggc
     7681 ctatagatgt caactctgca agcatgaatg gaagagaaca gatgacaagg gaagccctct
     7741 tcctgactgt gcgtcctgtg gtgcgtcgtc agatcgtgtc cgtctcgatg atgatgcaac
     7801 tgagaccctt gtggatgaac tcacagcgct tgcggctcac acttcagcca aagtatccat
     7861 tatttcaggc gatagcgagg aaggacagac attactggat gccttcggag gaatgggggc
     7921 gatcctccga tatgcatgga gttgattgaa tggatgtcct aattgaagcc acaatccctg
     7981 gcatcaggaa gggtatgtcc actttcggaa tagaagagtc tgattggctc tctcttctcg
     8041 gcccttctac tgtctctgat cacggagatt tggctatggc ttgccattct ctcgcccgag
     8101 ttctgcgtaa atcacccgta gatattgctg aaaatatctg cactgcgata actccccatc
     8161 ttgagggagt tgcccaagtt acatcgatga atggtttcgt caacatcaag gcaacaaata
     8221 gttggctttc caagcgcgta acagaagtgg cctcagatcc gcgtcttgga gtcataaagt
     8281 cagagatgcc ccgaactgtt gcaatcgatt actcatctcc aaacgttgcg aaagaaatgc
     8341 atgtagggca tcttcggtca acggtaatag gagacgcact agcacgaatt ttgacctatc
     8401 agggacatac cgtgattcgc gagaaccata ttggtgactg gggtacaccc ttcggtatgc
     8461 tgattgaaca tcttctcgat cttggagagg ccgaagcggg agatgagctt ggtgtagggg
     8521 acctcgatag tttctacaag gcagctcggg gaaagttcga tgatgactct gatttcgctg
     8581 cccgttcccg tgcacgagtg gtactgcttc agagcggtga tgaggaaacc ttgcaccttt
     8641 ggaaagtatt ggtgaacgag tcaactcgtt acttcaacga agtatatcgg ttgttagatg
     8701 tccttcttgt agatggggat ctaatggggg aatcggccta tcatccactc ctctcatcag
     8761 ttgtatctcg tctttcggat gcgggccttc tcgaggagag tggtggtgca gatgttgttt
     8821 ttcctggtgg tcaccttaac cgtgaaggag agcccctgcc cttgattatt agaaagggcg
     8881 atggaggcta caactatgcc accactgata ttgcatgcat catagatcgt acagagcgcc
     8941 tcaatgctga tgatttacta tatgtcgtgg gaacccccca gtctcgacat ttcgaaatgg
     9001 ttttcgaagt atgccgcatg gcaggtctat taggcgaaga gcaccgctct gagcatgtga
     9061 acttcggttc tgtccttggc tccgatggta aagttctgaa gtcccgttcg ggatctgcag
     9121 taaaactcgt agatttgctt gaagagtcta tctcgagggc aactgcggtc gtagatgaaa
     9181 agaatccagg acttgaagat ggcgagaaga ggaaaattgc acgtgctgtt ggtatcggag
     9241 cagtgaagtt cgctgatctt agtaatgacc ggacgcgcga ctacgtcttt gattggtcaa
     9301 agatgctttc ttttgagggc gatacgtcgc catatcttca gtatgcccat gctcgtatat
     9361 gctctatttt cacaaaggca aatgattcag attggttaga ttatccaatt aatattaatg
     9421 atcattatga ggctagattg gcacgtagcc tattgtccta tagagattca ttcgaatcat
     9481 ctgctcgtga tttaatgcct aatcgtctgt gcactcactt actttcacta tcttctgctt
     9541 tcacctcatt ctatgagaac tgcccagtac taattgctga ggacccagag gttcgccatg
     9601 gtcgactacg attgtgtgat gcgacggcta ggtctctaaa aatcgggctt tctttgctag
     9661 gcatcgaagc acctgagaga atgtaatcag aattctgatg cgtcaacaat atccgttgtt
     9721 tcaacagtat tcgcttctgc ctctgctctc atctgggtta ggaccctctt tgcttcaccg
     9781 aagctactgc atgcccgtgt tctttgtgct gagggccatc cgcagtcaat acggtcctca
     9841 tcgacagagt tcggttcaat ccaagctttg cataggcgat catggcaacc agcacgcacc
     9901 tcgtcatcct ctatccagaa actagttctg gtacatactg ggcaagcatc acgtcggagg
     9961 gtgcgttcta tttctcgtgc atcgggacca attgtcccga cagtccaact atcgattcgt
    10021 atttcgatga tgtcagtact ttctgcatcc gccatgaatc ctcgaattac catctctagg
    10081 tcctcgtcct caatcatcat cgcaaggacc tcttcccttg cttcgcggtc aattgcgatg
    10141 gcggtgagaa cccggtctcc gcgtgcaacc ataccgtgtc ctgtatcttc catggcatga
    10201 atccaacgac gcataatcgg gcctgagaag gttctgaagg aagggtattc ttcatggact
    10261 cgcttttccc ggtcggggta tggttgctat tggagataag gccccagact ttacgctgaa
    10321 ggatcaagac aagaatgacc tcaccttgtc atcatacaag ggtaggcggg tgattctctc
    10381 gttctatcct gcggctttca ccggtgtgtg cacaaatcag gcttgtacag tgaacgatgc
    10441 aatgtcttct ctttcagcca gtgattgcga tgtaatcggg atctcagtgg attccccgtt
    10501 ttccaacaaa gcgtttgcag atgctaacgg catcacgtat ccgctcctat ctgatgtcca
    10561 tcgagaggtc attactgcat acggcgtcac attcgatgac tttgcaatta agggatatac
    10621 tgtcgctcaa cgttcagttt tcgttgtaga gtcagatggc acgattgggt atgcttggta
    10681 ttctgataat cctggtatgg agcctaatta tgaggcttta ttcgcctatg tcggggcctg
    10741 aagtcccgtc atagggttca tacagcacca gcattagcgg atatcatcca ttgcacttcg
    10801 gtgcaggtga tcctcgctca cagcgcccct cgggtgtgct gcgatcggga ttccttttgg
    10861 gtgtggggtg attccctgat ttttgaccgt aacaacaacc tgaccgtagg ccctaggggc
    10921 cggaggtgtg tagcatgaat ctggttcttg atggggcgaa tatcgccaga cagggcgtcg
    10981 atagttcagg aaacgggaca caactccgtg cagcacttga tcgccttctt gcagatggtc
    11041 acactgtcta tccagtaatc gcgcagttca ggatgtctgg aaagagggcc ttcccaaaca
    11101 tggaatgggt caatgagtat cgtgagcatc catcggtgca tttcgttcag tcgccttccg
    11161 ggactgatga tgatgccttt atcctcgacc ttgcaatcca aatcaagggc gtaattgtga
    11221 gcaatgactt gttcagggat cacaaggagc gtcttggtaa ggactctgca cgatattgtg
    11281 ggtcaaaggc tactcatcgt atgatgtatt caatcgcagg cgagcttttc cttccagatc
    11341 cgaagttcaa gatgcctgta gaggaggcag tggaagtcca acctcctgcc gtggaggtta
    11401 ctgctcctgt gaaggagaag aaggggtctc caaaacaagg cagtagttcg agcaagagtc
    11461 gtagttctaa tcgtcaaccc tctaagacaa atcgttccca tcggatatct agtgcctcag
    11521 ttcgctcatc tatcttgcaa catggagatc tgcctatgtc ggtacagaaa ctatcgacgt
    11581 atcttcctaa gatgattgag aaagctactg gtcggaagat gtccaaagca gagattcgct
    11641 ctgaagccgg atttggaaac cgttcatgga ttgagatatt ctctgggatg tctcctgaac
    11701 tagtcattga tcggtctggt gatactccaa tggtcaaggc aggcgccatg aaggcaaaga
    11761 agtcgggttc ttcgaatcgt aatcgtggag ggaatcggaa gagtgccggt gattctgaga
    11821 gcgctagagt gcggaatcaa gatgccttga gtatagtatt caaggaaata atcgaagacg
    11881 ggcgctatcg tttggattct aagggtggcc tcatgtcacg cttccttcct tggatgaagg
    11941 tagaggagag gatgatcctt tcttggtctt atgtttgtca gaagtatctc aagcggacca
    12001 atgtccgcct tgctcgaatg aattctgctg atttcttcga actactctcg tctataccgt
    12061 ggcctctcgg taatgaatct ggtaaaatca tccggcatca tatcgatgag aatgaactaa
    12121 tcctctggcg tggttgatca atcaatccgc tcatgcaacc agattaggtg atatccaaat
    12181 ctcgtcttca cgggttcgct catagtgccg atttccatct ttctaacttc catctcaaag
    12241 ccagcaacca tctgtcctcg gccaaagttc cctaggtctc catttttgtg tctcgagggg
    12301 caagtagaat gcttcctagc ccgtttcccg aactccttga acggtttttt tgattccatg
    12361 atttgcttgt aaattgtcat cgcttggcct ttggaatcaa ctagaatatg acttgctcta
    12421 gcttgtttca tcaaatcaac cccatgcaag ccagcgtgca taggaaccgt agatgatacc
    12481 actgatggcg agagattcct cattgaatcg atccatcgta tctaggtagg tatggtactc
    12541 tgcgctgcca gatccgtagc ataccagtgc acgaccatac tcattacctg cgggatctat
    12601 ctcgtagacg aatggtgcat ggtcgctgtt gtatggcatt tcctctgagt caagaagacg
    12661 gatgtctgca ggatacttcg tggcaagtgc ctcattctcc tgagtaaact tccaatgtat
    12721 gttcgcaata tgttgtacat cctcttcgga gtttccgaac aaggtgactc cataattccg
    12781 ctctgcatca acgtggctca tgtcgagatt aacatatagg cgtagatgtt ctttcaattc
    12841 ctcttgatgt gcctctaccc atgcactgct tccaaagagc ccctgttctt ctccacccca
    12901 tgtacagaat ttcatggtat actctggctc ccccaatgta tcgtatagtg caccaaactg
    12961 ctgtgcaagt tcaattacag ttgcagttcc agacgtgtca tcaattgctc ctggtccatt
    13021 gtatacagta tcgtgatgcg ctccaaaaat gatcatgtct tctgtcgctc cagggatgac
    13081 tccgcaggtt acggaaacat ctcgattccc ttcgttatca acgcggacat caatctggaa
    13141 tcgctgtgtt ccgttgatga cttcatcctg aagaatctct ccaacagact ttgagaccat
    13201 gacaaaggca atctgagccg gcatcgtatc gaatcggcta acatcgactg acttgaagta
    13261 tggaacacag tctcctgaca ccagttcgtc acagttctgt ttcatgttta caagaatcag
    13321 agcgaatagg tcattctcct gtgctcgaag gaatagatcg gtgtttccag atacgtctcc
    13381 ttggccccat accatgccaa tagctccaga ggcagatgcc caatctgcat cctcgctgcc
    13441 attgccgaga tcgattagtt cagcatcttg agcataacca agttgcatcg taccgctgta
    13501 accctggatg acgaagtctt ctctgtgagt gaaggtggta acttctgcac caatatctgc
    13561 gattccacat gggtcaacgg tgccgattat aggtgctggt ccgggttcac agatactcat
    13621 agttggctcc gcgataatct caaacattgg tacgctgaaa gtttgaaccg tagctcccat
    13681 ccctgcttcg gtcatattct gtttgattgc ttcagctccg ttagcttctt cgacggtgcc
    13741 actcatccgc cctccccatt cgggatggcc gagatcgact aaggtttgag cgtatccacg
    13801 tgctctatct tgatcaaaat caataagttc gtaatcgggg acctcttcta cgaaaatgaa
    13861 attgtaagtt gttacgctta ctattatcag gaaagccatt actattgcat taatgccctt
    13921 tcccatagca tgaactacca acttttccca ccatgccagc gcattccagt cctccattgc
    13981 tcgggggtct ggtcgctcac ctgagccaat ccattctcca ttctcaatcg gggtatgatc
    14041 tagtacaatc ctgtttttag gaatatttcc ttctgccctc cattgatcat aactggatgg
    14101 gatttcagaa tctttttttg cgcctccatc aagaagccgt tgaattaagt cggctttctt
    14161 accggattga ctcagtcctt gtgacttgag ttcctccttg agacgcgcca ccgtccattc
    14221 ttggtactca gccatggttc accctatact cttgttcgat ttgaacccat tcggattctg
    14281 tgacttcatc cgtggttcag acttcttcac cagtccatcg tactgtgagg tcattatcga
    14341 tgcccagttg atcgagaatc cgtgcgacga tgaaatcgat tagatcgtca atgctctgag
    14401 ggtggttgta gaatcccgga ctcgctggga tgatgacacc tccccattgc gagattcgag
    14461 tcatattctc aagatggact gtggcatagg gggcttctct agggacgaga attagtgtac
    14521 gtttttcctt caaggcaacg attgcgcttc ttgtagcaag gttatccgag atgccagccg
    14581 caatctttgc agtcgttgtt cccgatgctg gacagatgac tacggaatcg atattcgcag
    14641 atccactagc cgattttgct gcgagattct gatttccttc aaggacgcaa ccatattgtt
    14701 ctgcgagttg ttctgcagta atgtcacatt caagatcaag attgattgca ccagcgttac
    14761 tcacgattag acgtacatcg tgacctgctg aggtcagtgc ctctatcaga cgtacaccat
    14821 accgggcgcc ggaggctccg gtgatggcaa tgacatgtag gcccatactc tgattggaac
    14881 actcatctgg cttgaagcgt tgcctgagcc tttaggtgaa ttaccggcgt gatgcgagct
    14941 tcattagtag gcgtagagtt tcccagtaaa tccagattaa tgtgactaga aggccgaata
    15001 ctgctcgcca ctccatctcc tttggagcgc cattctcaac acctcgttcg acaaaatcga
    15061 agtcagcagc gagcatcatc gcaccaattc caattacgag tacggagaaa cctattccga
    15121 ttgccccgtt tccatggatg taagggactt caatccctgc aatgcccagt atgaaactga
    15181 aaagatagat catgattata gcgacaactg ctgaagaaag cgcgattcta aaattgtcat
    15241 ttacgtttat gagtccgctt ctatagatgc ctaacatccc tccgaaaatc attgctgtaa
    15301 tgagaaaggc ttggatagat atgcctgaat atgcagcccc catagaattc tcaatcatga
    15361 atgtagtacc gccaaggagg aacccttgag cggatgcata gccgagaacg aatacaggat
    15421 tgctgaatag attcctcaac gatggaacaa accatgagag aagcaataca atgtagaata
    15481 tcccattcac aacgaa
//
LOCUS       DUKB01000027            7999 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_159300, whole genome shotgun sequence.
ACCESSION   DUKB01000027 DUKB01000000
VERSION     DUKB01000027.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7999)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7999)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7999
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_159300"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..229)
                     /locus_tag="HA345_01110"
     CDS             complement(<1..229)
                     /locus_tag="HA345_01110"
                     /inference="COORDINATES: protein motif:HMM:NF013871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83985.1"
                     /translation="MGDAGSAGQLDESLRHLLDELTPSVLSVINKLNDGGNRVWIVGG
                     AIRDALKDLVPHDIDIATDASPEEVIALIPNA"
     gene            312..707
                     /locus_tag="HA345_01115"
     CDS             312..707
                     /locus_tag="HA345_01115"
                     /inference="COORDINATES: protein motif:HMM:NF014273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HIH83986.1"
                     /translation="MEIVLIEVAALQPHEEIKPKTLKKMVEAIQKRGGYIKPILIDRA
                     SRAILDGHHRYNSALQLNLRLIPAIEVDYLKDDSIEVRSWPGKEHLEIDKQAVLDMAM
                     SGEIYPPKSSKHTMSADYPNCFCPLSELE"
     gene            complement(708..2504)
                     /locus_tag="HA345_01120"
     CDS             complement(708..2504)
                     /locus_tag="HA345_01120"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017142.1,HMM:NF036516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M61 family metallopeptidase"
                     /protein_id="HIH83987.1"
                     /translation="MSSIVHRLDVAPRHSQRYAGGIDIPSPLGRRLVLAFPRWSPGSY
                     LIREYGRFAHDFRSWAIVDGESVDCISKRHGPNEVHVTIPAGASSVHANWLAFGHDLT
                     VRTNHIDPSHFHMVPSATFPRLIRGSSTPEGPYIIQIDHPEDWTVSTQLTTEGTEACS
                     TGTRSIFSAASRDALYDGVMEANATPEVPFNAGGRRFRLKLWDAGGLPLAESRVNHLV
                     KSMQDLFAEFHALFGEPPWDNYVVILHLTEKARGGLEHTGSQSSQMPRTSMDEGDKEG
                     WRDLISLLSHEYVHAWNVKRLRPKTFEDYDLSIEMHTDLLWWFEGVTSWLGDMMCLRS
                     GVWSDEDWAADLKRKLTRHHSMSGWDHQCLADASHETWYHLYRPHPHSAETTISYYLQ
                     GEIAGMILDLELRRRTKGTVGLDDVMVDLWNRHGLHIEGDSGKGGIDPRGINEVDIIA
                     SMNRLTGGRLNGAVRRLVHGLGAPDMGLWAKGMGRRLEPLEDKDSVGWLGIHLNESPL
                     RVRSFLAGSPVREILQPSDEIVAVDGRRTRTSSDLKSALRGKIDSEILVTLARHGGLI
                     EVGVKTGKDPLHPVIIKGKGNSIWRTFADSRR"
     gene            complement(2501..3514)
                     /locus_tag="HA345_01125"
     CDS             complement(2501..3514)
                     /locus_tag="HA345_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83988.1"
                     /translation="MASVRLEMERLSHKDIRQQRRGIRHLFELNDPSALPAFIPFLDH
                     DDEWFVDQCVEAIRRWHDGEDTTLLHRLSSHSSPRLRRLAIDIEDRHVDSSEVLDTLR
                     KDKDVEVRKRAWIRSLHRFSGEKFLGLAAEALESRLVMIRRSAINVAGRRSIDGIVEH
                     GLHDSSPTVIIESIRFLSKEHPGLIECLQNGTAAVRAAAFQRICESREPTDEELIHLL
                     AELGPDSIEAAFESLRGGIRWASPPLDDIVFSLDSESFLPRLIRRAPENDVDPIRARI
                     LSSGEEDIRSMRILEDLIGRSFGPLTAKALEVMASRRDDEPMAVLAKSVLEDNALRRG
                     DSE"
     gene            complement(3565..4341)
                     /locus_tag="HA345_01130"
     CDS             complement(3565..4341)
                     /locus_tag="HA345_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83989.1"
                     /translation="MSLTIREMFGLSLFIGCIFATMGSFLTIFATGVDDVDLEAAGRV
                     GAIVGTSVAVVIFTYGSVSKLLGFEKAKPVDRSIRIETIRSMFHSIEMMAVENDLKWS
                     VSRRIMDSSGTPTIDLHDMDIRGADAIVAVLLKNRNSLGRIRIVTGTGRGSAAGGVDL
                     TVAEHVISKLRRSASSHGWQFIEKRSHILLRPMGRKPSKAVWLRRFLVGVVPITGSLA
                     LAFRDLAGSAPGAGQNGFLFGFAIGLMVTAMMASHRDRTG"
     gene            4438..5193
                     /locus_tag="HA345_01135"
     CDS             4438..5193
                     /locus_tag="HA345_01135"
                     /inference="COORDINATES: protein motif:HMM:NF021384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2085 domain-containing protein"
                     /protein_id="HIH83990.1"
                     /translation="MEINGRPDRRRERRTATWIAGVFGGYLFLCFLAPAMLPTGSVPE
                     LSGRANSIDYFSHNSWGNHNWSEDSELGHNQSAHGGTFAWGEMNPLWAFTYGFGDINC
                     HQKYSRSWVINENQMPVCVRDIGIFAGAALGAALFGRFGLNRWTIRDTLLSILPDNAL
                     TGIYQNNRRMHAFLGIGLLCAVPMGIDGFTQLLTDYESINPIRLITGLGFGMGLGLFF
                     TSSLSARPQDFENGAGQVMLPGGARFLPPSEEE"
     gene            complement(5194..6579)
                     /locus_tag="HA345_01140"
     CDS             complement(5194..6579)
                     /locus_tag="HA345_01140"
                     /inference="COORDINATES: protein motif:HMM:NF013740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HIH83991.1"
                     /translation="MSNRDWSTVTFERRLQVVYHGLVIAALVILSAQLLEGVLKPLFL
                     AFGLYFVLKPGADWLSNHGFSTLQANGTMLLLLILALSLIGLFAWLQVDAFLSDQAKI
                     DELELAYTNLLLTAENWPLVGDYVENMDTSQSPSKILADMGIEIGSASQIASLSGMVF
                     NSLTVLFFLLFIIFEANLLPGRIEAAFPGDSLGRFQNIAERARDGINAYIVVKTGVSI
                     GTGLCAGILCLLFGIDLWFVWAILAIILNYVPYIGSLIASVPPMILGLLMLNDQPMVL
                     LAFVGLLVANQQFWGGFVETKWSGEALDLSPVLLLLVVAFSYWLWGVVGMVISVPFTV
                     IIKIVLDTVDQTRPLAVLMSERSPDLQKVWNDALRDGRLDDWEFTRILELQRNLDIDE
                     GQMNRAAGRAAMISALERDSMSPIEREFILKHSRAVSMHKDASSVLNSGALSPMAREM
                     LESMLSSLEEE"
     gene            complement(6626..7732)
                     /gene="dph2"
                     /locus_tag="HA345_01145"
     CDS             complement(6626..7732)
                     /gene="dph2"
                     /locus_tag="HA345_01145"
                     /inference="COORDINATES: protein motif:HMM:TIGR03682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphthamide biosynthesis enzyme Dph2"
                     /protein_id="HIH83992.1"
                     /translation="MDLDAHEFQLDDLVERIKANDTRLVALQVPEGLKMQAFEMMDTI
                     ESETSARVVLSADPCYGACDLVHDKMQNIGVELVAHMGHSQMNIDSGMDTEFIPVTYN
                     RSPEIAPVIPILNVHRDIAIQRVNNATEPPSSEVEAVLKFEDMVGRVSPLTDSKLGLV
                     GSIQHLHLLPTYKKYLEEAGFDVTIPVGGARLSFPGQVLGCNYSGDDPTVGHYLFLGS
                     GDFHPIGLVMHTGKPLAMLDPYTDEASEMGRERIERILRQRSALIMSSMDKQRFGILI
                     GSKPGQMRRNLAMRMKNKLKKHGKNAYLMAMEHVGPELIDFYPVDVFVNTACPRIAID
                     DAVKYAKPMITPYELEVVLGEKKWEDGYQFDEIH"
     gene            complement(7789..>7999)
                     /locus_tag="HA345_01150"
     CDS             complement(7789..>7999)
                     /locus_tag="HA345_01150"
                     /inference="COORDINATES: protein motif:HMM:NF012383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HIH83993.1"
                     /translation="VVDDVISTGGTMEPVLSALIDMGVELAGVWTIFEKDQGMQNLID
                     KHAWPLSSLVRIEMVDGVVNVLPSI"
BASE COUNT         2235 a         2105 c         1779 g         1880 t
ORIGIN      
        1 ttgcattagg aatcaaagca atcacctcct caggcgaggc atcggttgca atatcgatat
       61 catgaggaac aaggtccttc agagcgtcac gtattgctcc accaacaatc catactctat
      121 tgcctccatc gtttagttta ttgattactg aaagcactga aggtgtcaat tcatccaaca
      181 aatggcgaag cgattcatct agttggcccg cagacccggc atcgcccata tccgttttcc
      241 acccagcgcc cacatgaatc aaccgctcta tcaagccaag ccgttttgaa tctgaacgca
      301 tacgtcaggt catggagata gtcctcatcg aggttgcggc ccttcagcct cacgaggaaa
      361 tcaagccaaa aacgctgaag aaaatggttg aagcaattca gaagcgagga ggctacatca
      421 aaccaattct cattgaccga gcgagtcgtg ccatcctcga tggccatcat cgatacaact
      481 ccgcactaca gctcaatcta cggctaattc cggctattga agtcgattat ctgaaggatg
      541 attctatcga ggtgcgttca tggccaggca aagaacatct tgagattgac aaacaagccg
      601 tcctcgacat ggcgatgtca ggtgaaatat acccgcctaa atccagtaag cacacaatgt
      661 ctgcggatta tccaaattgt ttctgtccac tcagtgaact cgaataatca gcgccgtgaa
      721 tcagcgaatg tgcgccaaat ggaatttcct ttacccttga ttattacagg atgtagcgga
      781 tctttacctg tttttacgcc cacttcgatt aagccgccat gccgggcaag agtcactaaa
      841 atctctgaat ctatctttcc acgaagtgca gacttcagat cagaagaggt acgagtgcgg
      901 cgcccatcaa cagcgacaat ctcgtcgctg ggctgtagaa tctctctaac cgggctacct
      961 gcaagaaagg atcgtaccct cagcggtgac tcattcagat ggattccgag ccacccaact
     1021 gaatccttgt cttccaaagg ttccaaacga cgacccattc ctttagccca gaggcccatg
     1081 tcaggagctc ctaacccgtg aactaggcgg cgcaccgctc cattcaaccg gccaccagtc
     1141 agacgattca tagaagcaat aatgtcaact tcattaattc ctcgaggatc aatgccgccc
     1201 ttacctgaat ctccttcaat gtgcaaacca tgtctattcc aaagatcaac cattacatca
     1261 tcgagtccga ctgttccttt ggttcggcgg cgtaactcga gatcgagaat catccctgcg
     1321 atctcgcctt gtaagtaata cgaaatcgtg gtctctgcag aatgaggatg gggccgatag
     1381 aggtgatacc aggtctcatg acttgcgtct gcaagacact gatggtccca gcccgacata
     1441 ctgtggtgtc gtgtgagttt tcgcttcagg tcagccgccc aatcctcatc ggaccatacc
     1501 ccacttcgca aacacatcat gtcacctaac caactcgtga cgccctcgaa ccaccatagg
     1561 agatcagtat gcatctcgat ggagagatca taatcctcga aggtcttcgg tcgcaatcgc
     1621 ttgacattcc aagcatgaac atactcatgt gaaagtaaag agatgaggtc ccgccaacct
     1681 tctttgtcac cctcatccat cgatgtgcgc ggcatctgac tcgattgact acccgtatgt
     1741 tccaagccac ctcgtgcctt ctcagtgaga tggagaatca caacataatt gtcccatgga
     1801 ggttcaccga acagagcatg gaactctgca aacaaatctt gcatcgactt aaccagatga
     1861 ttcacacggc tttcggcaag tggtaggccg cctgcatccc atagcttcag acggaatcgg
     1921 cgacctcctg cattgaatgg gacctctggt gtagcattcg cttccattac tccatcgtag
     1981 agggcgtctc gtgaagccgc actgaaaatg gaacgggtac cagtcgagca ggcctcggtt
     2041 ccttcggttg taagttgagt cgacactgtc caatcctctg gatgatcaat ctgtatgatg
     2101 tacggaccct caggggtact ggaaccgcga atcaatcgag ggaatgttgc actcggaacc
     2161 atgtggaaat gagacgggtc aatgtggttg gtacgcaccg ttaggtcatg gccaaaagca
     2221 agccagtttg catggactga cgacgcacca gctggtatgg tgacatgtac ctcattgggt
     2281 ccatgacgct ttgagatgca atctactgat tctccatcga caatagccca agatcggaaa
     2341 tcatgggcga atcgtccgta ttcgcgaatc aaataggaac caggggacca acgagggaaa
     2401 gcaagaacga ggcgccggcc cagtggagaa gggatatcga tgccgccagc ataacgttgg
     2461 gaatgcctag gagcgacatc aagccgatgg acgatggaac tcattcagaa tcacctcgac
     2521 ggagtgcatt gtcctcaagc acgctcttcg ccaatacggc catcggctca tcatccctcc
     2581 gactagccat cacctcgagt gctttcgcag tcaaaggacc gaaagaacgg ccaatgagat
     2641 cctcaaggat tctcatcgag cggatatcct cctcgcctga ggacaggatt cgagcacgaa
     2701 ttggatccac gtcattctca ggtgctctcc gaattaaccg tgggagaaat gattcgctat
     2761 ccaatgaaaa cacaatatca tccaacggag gggaggccca gcgtatccct ccccgaagag
     2821 attcaaacgc agcctcgatt gaatcaggac ctaactcagc aaggagatgt atcagttcct
     2881 catctgtcgg ctccctcgat tcgcaaatcc tctgaaaagc cgctgctctg actgccgcag
     2941 taccattctg aagacattca atcaatccgg gatgttcctt cgaaaggaaa cggatggatt
     3001 caatgatgac agtaggtgat gaatcatgta atccatgttc aacgattcca tctatagaac
     3061 gacgtcctgc aacatttatt gctgaacgac gaatcattac taatcgagat tctaaagcct
     3121 cagccgcaag gcctagaaac ttctcgccag aaaaacgatg taggctacga atccatgcgc
     3181 gctttcggac ctcgacatcc ttgtccttac gcaaagtatc gagaacttca gatgaatcaa
     3241 cgtggcgatc ctcgatatca attgcaaggc gacggaggcg aggtgaagag tgggatgaga
     3301 gtcggtggag aagtgtcgta tcctccccat catgccacct cctaatcgct tccacgcact
     3361 gatctacaaa ccactcgtca tcatgatcaa ggaatggaat aaacgcaggc aaggccgatg
     3421 gatcattgag ttcgaaaaga tgtctgatgc ctctcctctg ttgacggatg tccttgtggg
     3481 acaaccgctc catctccaac ctgacggatg ccatgccctc tcctcgagcc cgccccacat
     3541 gaatgatgtg cgtcgagaaa catgtcaccc agttcggtca cgatgggaag ccatcatcgc
     3601 agttaccatc aatccgattg caaaaccaaa gaggaaacca ttctggcctg cacccggcgc
     3661 agaacctgcg agatcgcgga atgcaagagc caaggaacca gtaattggca cgacaccaac
     3721 gaggaagcga cgaagccaga ccgccttaga cggttttcga cccattggtc gaagcaggat
     3781 gtgactcctc ttttcgatga actgccagcc gtgtgaagat gctgaacgtc gcaacttaga
     3841 gattacatgc tctgcaaccg ttagatcaac accccccgct gctgaacctc tcccggttcc
     3901 cgtcacgatt cggatgcgac cgaggctgtt tcgattcttc agaagaactg ccacaatggc
     3961 atccgctcca cggatatcca tatcatgtaa atcgatggtc ggtgtgccag acgaatccat
     4021 aatcctccta gacacggacc atttcagatc attctctact gccatcatct caatcgaatg
     4081 aaacatcgaa cgaatcgtct caatccgaat gctacggtcc acaggttttg ccttctcaaa
     4141 gccgaggagc tttgatactg atccataggt gaaaatcacc accgctacgg atgtaccaac
     4201 aattgccccg actctacccg ctgcttcaag atcaacatcg tcgacacctg tagcgaaaat
     4261 cgtgaggaaa gaccccattg tagcaaagat gcaaccaatg aaaagcgaga ggccgaacat
     4321 ctctcggatg gttagactca tctccgcccc tcgcaatcga ttcgatggat acaattttac
     4381 ctattcggaa agcgatactc ccgaagaatg atatctactc cgatagtaac tgcgccgatg
     4441 gagataaacg gccgtccgga taggcgtcga gaacgacgaa cggctacttg gattgcaggg
     4501 gtattcggag gctacctctt cctatgtttc cttgcacctg ccatgcttcc gacaggctct
     4561 gtccctgaac tttcaggaag agcgaattca attgactact tcagccacaa tagttggggc
     4621 aaccataact ggtctgaaga ttcagaatta ggacacaacc aaagcgcaca tggtggcact
     4681 ttcgcatggg gtgagatgaa tccattgtgg gcgttcacct atgggttcgg cgatattaac
     4741 tgtcatcaaa aatactccag atcttgggta atcaacgaaa accaaatgcc tgtctgtgta
     4801 agagatattg gcattttcgc gggagctgct ctgggtgctg cactctttgg aagatttggc
     4861 ctaaacaggt ggacaatcag agacacacta ctctccatcc tccctgacaa cgccctcact
     4921 ggcatctatc agaacaaccg tagaatgcac gcattcctag gaatagggct actctgcgct
     4981 gtcccaatgg gaatcgatgg gttcacacaa ttactgacag attatgaatc cataaacccg
     5041 attcgtctga tcaccggcct tggtttcggc atgggcctgg gtctattctt cacctccagc
     5101 ctctccgcgc gccctcagga ttttgaaaac ggagccggac aagtcatgct tccaggagga
     5161 gcacgcttcc tacccccctc ggaagaagaa tgatcattct tcttcaagcg aagaaagcat
     5221 cgattcaagc atctctcgag ccattggaga gagggcgcct gagtttagaa cacttgaggc
     5281 atccttgtgc atactaactg ctcggctgtg cttgaggatg aattcgcgct caataggaga
     5341 cattgaatcg cgctcaagtg cactaatcat tgccgcacgc cctgctgctc gattcatttg
     5401 gccctcatcg atatccaaat tccgctgaag ttctagaata cgagtgaatt cccagtcatc
     5461 tagacggcca tcacgaagcg catcgttcca tactttctgt aaatcaggac tgcgttcgga
     5521 catcagtacc gcaagggggc gagtctggtc cacagtatca agaacaattt tgataatcac
     5581 agtgaagggc accgagataa ccatcccaac aacaccccaa agccagtagg agaaggcaac
     5641 aacaagaagg agaagtaccg ggctgagatc cagagcctcg ccagaccatt ttgtctctac
     5701 gaagccaccc cagaactgct gattggcgac tagaagtcca acgaatgcaa ggagtaccat
     5761 gggctgatca ttgagcatca ataatccaag aatcatgggt ggtacagatg cgatgagtga
     5821 accaatgtaa ggcacatagt tcaggataat tgcaaggatc gcccaaacaa accagagatc
     5881 aattccgaac aaaaggcaga ggattcctgc acataatccg gtgccgatgc tgacaccggt
     5941 cttgacaaca atgtaggcgt taatgccatc acgtgcgcgt tctgcgatat tttggaaacg
     6001 cccaagtgaa tcccctggga aagcggcctc aatccgacct ggaagtaaat ttgcttcaaa
     6061 gatgatgaac agcaagaaga agagtacagt aagggaattg aacaccatgc ctgaaagtga
     6121 agcaatttgg ctggctgaac ctatctctat ccccatatca gcaagtatct tggatggcga
     6181 ctgagaagta tccatattct cgacataatc gccaacaaga ggccagtttt cagctgtcaa
     6241 caagaggttt gtatatgcca attccaactc gtcaatcttg gcctgatctg acagaaaagc
     6301 atccacctga agccaagcaa aaaggccaat caaggacaag gctagaatca gtagaagaag
     6361 cattgtacca ttcgcttgaa gcgtactgaa accatgatta ctgagccaat ccgcacctgg
     6421 cttgagaacg aaatagaggc cgaaggcaag gaaaagtggc ttaagaacgc cttcaagaag
     6481 ttgagcagag agaatgacaa gagcggcaat taccagtcca tgatacacta cctgcaacct
     6541 tctctcaaag gtgactgtgg accaatccct attcgacaca accttcggta tactctaaac
     6601 gatatgacaa taccgattaa gaaagtcaat ggatttcatc gaattgatat ccatcttccc
     6661 atttcttttc gcccaaaact acctctaatt cgtatggggt gatcatcggc ttagcgtatt
     6721 taaccgcatc atcaatggca atccttggac aggcagtatt gacaaacaca tcaactggat
     6781 agaaatctat caactcagga ccaacatgtt ccattgccat caaataggca tttttaccgt
     6841 gctttttcag cttatttttc attcgcatgg ctaaattacg acgcatctgt ccaggtttag
     6901 acccaattag aatcccgaac ctttgtttgt ccatagatga cataattaga gccgaacgtt
     6961 gcctcaagat tcgctcaata cgctctctac ccatttctga agcttcatca gtatatgggt
     7021 caagcattgc aagtggttta ccagtatgca tgactaatcc gattggatga aaatcaccac
     7081 ttcccaagaa aagatagtgg ccgactgttg gatcgtcgcc cgaatagtta caccctaaca
     7141 cttggccagg aaatgacaaa cgagcaccac ctactggaat cgtgacatca aatcctgctt
     7201 cttcgaggta cttcttgtaa gtaggtagaa ggtgcagatg ttggatacta cctactaaac
     7261 cgagtttaga atctgtcaga ggagatactc gtccaaccat gtcttcgaat tttagtactg
     7321 cttcaacctc tgaagaaggt ggttctgttg cattattgac ccgctgaatt gcaatatctc
     7381 tgtggacatt caagataggt ataaccggag cgatttctgg actgcgattg tatgtcactg
     7441 ggataaattc agtatccata cctgaatcta tgttcatttg agaatgaccc atatgagcaa
     7501 ctaactcgac tccaatattc tgcatcttgt catgcactaa atcacatgct ccataacagg
     7561 ggtcagcaga aagtactact cttgcagaag tctctgactc gattgtatcc atcatctcaa
     7621 atgcctgcat tttgaggcct tcaggcacct gaagcgcaac caaacgtgta tcattagcct
     7681 tgattctctc gaccaaatca tcgagttgga attcgtgggc atcaaggtcc atggttagac
     7741 tgccctcaca ggacctgtat ttgagcagtt gcactagatt aagtccaatt atatggatgg
     7801 aaggacattc acaacgccat ctaccatctc gattcgaaca agactactca agggccacgc
     7861 atgcttatcg atcagattct gcattccctg atctttttcg aatatcgtcc aaactcccgc
     7921 taattccaca cccatatcta tcaacgcact aaggactggc tccatcgtcc cacctgtcga
     7981 aatcacatca tccacaacg
//
LOCUS       DUKB01000028            3302 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_221876, whole genome shotgun sequence.
ACCESSION   DUKB01000028 DUKB01000000
VERSION     DUKB01000028.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3302)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_221876"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="HA345_01155"
     CDS             complement(<1..311)
                     /locus_tag="HA345_01155"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: protein motif:HMM:NF013293.1"
                     /note="catalyzes the formation of 3-phospho-D-glycerol
                     phosphate from D-glyceraldehyde 3-phosphate in glycolysis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HIH83994.1"
                     /translation="MSIKVAINGFGTIGKRVADAVDAQDDMEIVGVTKTGPSFGCGLA
                     EKKGFPLYCTFDDADRISSFAESGYKCQGGLSDLLAIADVVIDCAPGKMGADNLAKYK
                     AA"
     gene            413..1987
                     /locus_tag="HA345_01160"
     CDS             413..1987
                     /locus_tag="HA345_01160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83995.1"
                     /translation="MESRSEIAQRSVRLKRDLSKMLDQAIQLDRAVKIGWGRDGEEKP
                     KKQETGVMTHLPAKLKLRLLGDMGDLVGSANNGALFEVVGTVGHMACAYHQDGKCTIT
                     KQTGDSVGLGMTGGTVILRSDTGAAAGESMSGGLLVIRGNAGNRVGAAMNDGTIILMS
                     NAGEQIGECMTGGRIVVDGRIESLGKGAKSRSIETEELVEINDLLSPHSFKLTMDATI
                     IETDPEGGTPILAPQKGSSGRFDGIRLCAHGNTLSTSHMVTIDSTVKMPTTSTGLDLR
                     SPWIPILTKGPSKGGNGIDSQPCMTDASPRSIDFVRISEENYSTLREELSEAGGAVID
                     IGGFPNLSESVIHGLAVVASGFLPARAPVLLMDNVDHTERLLRMTAELGLAGAIVDVR
                     ALGSAPAIAALPTVGIVLSKQKVEMSVLLRIDWTPTAADILTVVAAGMHGILAEPFIG
                     DEAPPTTVKKIATTLDADIQSREKEMRGWLQQMGAASLSELKRHHLRANSYESAAMSG
                     LRLEGYRQPLPMWSRK"
     gene            2034..>3302
                     /locus_tag="HA345_01165"
     CDS             2034..>3302
                     /locus_tag="HA345_01165"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015448.1,HMM:NF015449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83996.1"
                     /translation="MPTVTYEHATIRGLLSRYGVIHDPDLWEAQLSNIGCVVEGSNDE
                     EIEIEVFPDRADLLSVETMTRAARSFLHQRVQAPILDVEDGEMTMEVERDIASIRPVI
                     LAAAVRGVDTGETAEERDAFIQSLMDHQEKLHLTLGRRRRLASIGVHDLNSLAPPFKV
                     RAVSRDHRFVPLAMEEAMSIDEILEHHPKGMEYAHLLEGMNSVPVIEDAVGRVLSFPP
                     IINGSHTTVVESTTDFLIDVTGWDPRACEASLLLICLALHERGGTVESVRMTSATGEI
                     FQSPDGSARRHHLPARLLERILGGHIDSSRIASALERMGGRLVESRTATEGPRKAERW
                     ADAAIGDLIHVIEMPRWRFDLLHPIDLVEEVATGIGYESLGEATSTLALEGKPLARSS
                     LVRRINESLSSQGIQQVQTLTLSNDEVQFER"
BASE COUNT          846 a          856 c          856 g          744 t
ORIGIN      
        1 gcggccttgt acttggcaag gttatcagca cccatctttc caggtgcaca gtcgatgaca
       61 acatcggcta tggcaagtaa gtcagaaagc ccaccttgac acttgtagcc tgattctgcg
      121 aaagaggaga tacgatctgc gtcatcaaat gtgcagtata gtgggaaccc tttcttctcc
      181 gctagcccac aaccaaacga aggcccggtc ttcgtgacac ccacgatttc catgtcatcc
      241 tgcgcgtcta ctgcatcagc aacacgcttc ccaatcgttc caaatccatt gatggccact
      301 ttgatactca tgtgacttcc tcagcccgtc gcccccgcag gccttctatc aaccattctc
      361 aggctgaata gagccgaagg ggtcaaggac ggccttgaac cccgggttgg ccatggagtc
      421 ccgttcagag attgcgcagc gtagcgtgcg cttgaaacga gacctttcca agatgcttga
      481 ccaagccatc caattggacc gtgccgtcaa gattggatgg ggcagagacg gagaggaaaa
      541 accgaagaag caggaaactg gcgtaatgac gcatcttccg gctaaactca agctgcgctt
      601 gttaggagac atgggggatc ttgtaggtag tgccaacaat ggtgccctct ttgaggtagt
      661 tggcaccgtt ggccacatgg catgtgccta ccaccaggac gggaagtgta caatcacgaa
      721 gcaaactggc gacagtgttg gacttgggat gactggtgga accgtgattt tacgttctga
      781 tactggagcc gcagccggcg aatcaatgtc aggagggctg ctagttatcc ggggtaacgc
      841 cgggaaccgc gttggagcgg ctatgaacga tggcaccatt atcctgatgt cgaatgcggg
      901 tgaacaaatt ggagaatgta tgaccggggg ccgaatcgtt gtcgatgggc ggattgaatc
      961 tctaggtaaa ggggctaaat cacgatcaat tgaaaccgaa gaacttgtcg agatcaacga
     1021 tttactctca cctcatagtt tcaagttgac aatggatgcc acgataatcg aaactgaccc
     1081 agaaggtggg actccaatct tagcacctca gaagggatca tctggtcgat tcgatggcat
     1141 ccgattatgc gcacatggta atactctctc tacatcacac atggtaacaa ttgattccac
     1201 agtgaaaatg ccgactacat ccacgggact tgacctccgg agcccatgga ttccgattct
     1261 tacgaaagga ccttccaaag gtggaaatgg gattgatagc cagccttgca tgacagatgc
     1321 atccccacga tcgattgatt tcgtacgtat cagcgaagaa aattactcga ccttgcgaga
     1381 ggaattatcc gaagcaggag gtgcagtgat tgacataggt ggattcccaa acctgtctga
     1441 atcagtgata catggtctcg cagttgtcgc atcaggcttc ctccctgcac gagcacctgt
     1501 cctcttgatg gataatgtag accatactga gagactcctg cgcatgacag ctgagcttgg
     1561 gctggccggt gcgattgtcg atgtaagggc actcggatca gcgcctgcca tagcagcact
     1621 tccaactgta ggcatagttc tctcaaaaca gaaggtcgag atgtccgttc tactccgaat
     1681 tgattggaca ccaactgcag cagatatcct tacagtagtc gcagcgggca tgcatggtat
     1741 tcttgccgag ccattcatcg gagatgaagc tccgccgact actgtgaaga aaatcgcaac
     1801 tactctagat gcagatatcc aatccaggga aaaagagatg cgtggttggc tccaacaaat
     1861 gggagcagca agtctgagtg aactcaagcg ccaccacctg agggctaatt cctatgaatc
     1921 cgcggcgatg tctggcctga gattggaagg gtaccgacaa cctctcccaa tgtggtcacg
     1981 aaaataagcg aagaggtcaa accggagagt gaacagcccg gaatgggatc acaatgccga
     2041 ccgtgaccta cgaacatgcc acaatcaggg ggcttctctc tcgatatggc gtcatccacg
     2101 atcctgatct ttgggaagcg cagttatcca atatcgggtg cgtggtcgaa ggttcaaacg
     2161 acgaagagat agaaatcgaa gtgtttcctg accgtgcgga tctcctctct gtcgagacca
     2221 tgacccgggc tgctcgctcc ttcctacacc agcgagtaca ggctcccatc ctcgatgtgg
     2281 aagatggtga gatgacgatg gaggtggaac gtgacatcgc ttccattcgt ccagtaatcc
     2341 ttgctgcggc cgtacgtggc gttgatactg gggaaactgc tgaggaaaga gacgcattca
     2401 tccagagcct aatggaccat caagagaaat tacaccttac attgggacgt cgtcgtcgtc
     2461 tagcttcaat cggcgttcac gatctcaaca gccttgcgcc accgttcaag gttcgtgcag
     2521 taagccgcga ccatcgtttc gttcctttgg ctatggaaga agcaatgagc attgatgaga
     2581 ttctagaaca ccatccgaag ggaatggaat atgcacatct gcttgaagga atgaattcgg
     2641 tccctgtaat cgaagatgct gtcggacgtg tgctctcatt ccctccaatc atcaacggga
     2701 gccatactac cgtagttgaa tccacaactg acttcctgat tgacgtcaca ggctgggacc
     2761 ctagagcctg tgaagcatcc cttctcctca tctgtctcgc cctacacgag cgaggtggca
     2821 ccgtagagag tgttcggatg acatctgcaa ctggagagat attccagagc cccgatggta
     2881 gtgcccgacg tcatcacctc ccagcgagat tacttgagcg aatccttgga ggccatatcg
     2941 attcgtctcg aatagctagt gctcttgagc gcatgggtgg ccgactcgtc gaatctcgta
     3001 ctgcaactga aggacctcga aaggctgaac gttgggcgga tgcagcaatt ggtgacctca
     3061 tccatgtaat cgaaatgccc agatggcgct tcgacctact ccatcctatt gacctcgttg
     3121 aggaagtcgc aactggaatt ggctacgaga gcctaggcga agcaacttca accctcgctc
     3181 ttgaaggaaa gcctctcgca cgctcatccc ttgttcgccg aatcaacgaa agcctgtcat
     3241 cccagggcat tcaacaagtc cagaccctaa ccctatccaa cgacgaagtt cagtttgaaa
     3301 gg
//
LOCUS       DUKB01000029            4986 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_16468, whole genome shotgun sequence.
ACCESSION   DUKB01000029 DUKB01000000
VERSION     DUKB01000029.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4986)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4986)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4986
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_16468"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..338)
                     /locus_tag="HA345_01170"
     CDS             complement(<1..338)
                     /locus_tag="HA345_01170"
                     /inference="COORDINATES: protein motif:HMM:NF013097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83997.1"
                     /translation="MVRTSLDDLRPAEEHLGILAKDLRLVFGIWVIITTIIALFSKEI
                     IEQWMFSLGNLIEGSTVYSPERWLRLRWGIVLLVGMLVVAPYFLIVLNRFTRPGLLPK
                     ERILMSTASV"
     gene            complement(348..1382)
                     /locus_tag="HA345_01175"
     CDS             complement(348..1382)
                     /locus_tag="HA345_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH83998.1"
                     /translation="MRLGTRLVVVILLLSMIAAPTVAYHQGPPLVENNGNPTAIYGCT
                     CHGVGGPLNGQPSDRAVVSVSGVPIQYEIDVAYELTIKVQDANTLAGESGNVAGGFLM
                     SSGDMGTFTWTEEYDIRPAAGTTDEDSTSRSTSNNISQSDTDADGQWVVTWTAPSEDS
                     GAVFFYVAGNSVDDSGGADEGDYWNILSFSINPPGTVTNADGDDLTTRTVSVGTYENL
                     FVAEISEDQIEHKRQMALSADVFLKGNIYYWSSLLFLIVGAVLQREVTERKRGEGPSY
                     LARELAYPQILRRGIAAIILFYIGVTVKADGGDVMLWSVTFFCSAWAVYGVYRTWLAM
                     NTEPTPDDVM"
     gene            complement(1454..3676)
                     /locus_tag="HA345_01180"
     CDS             complement(1454..3676)
                     /locus_tag="HA345_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HIH83999.1"
                     /translation="MGRKEDNIKIATQVMHDRDRIRNLAIAAHIDHGKTTLSDNLIAG
                     AGMMSEDLAGKSRVLDFDEQEAARGITINAASASMVHEIEDAEGNKDNYLINLIDTPG
                     HVDFGGDVTRAMRAVDGCIILACAVEGTMPQTETVVRQALKERVQPVLFINKVDRLIN
                     ELQIDGPEMMKRFEKIIGKVNKLIAAFAPDKYKKEWQVDVQSGTVAFGSAYYNWGMSI
                     PFMKKTGLNFKDIFEHCHNDEQKALAKKAPVHQVLLDMAVERLPGPLTAQKYRIPNIW
                     QGDLESETGKAMLDCESDGPLSVMITKIWMDPHAGEVAVGRIFSGTVKQGETLWALGG
                     SKAERAQQVAMMVGGDRIQVPEVSSGNIVAITGIRSAAAGVTISREADATPFEAIRHY
                     SEPVVTVAIEPKALKDLPKFVDALRTLAKSDASLQVTTNQETGEALLAGMGELHLEIS
                     VYRLEEEQNIKVNVSEPIVVYRECIEGDNNGHAFEGKSPNRHNRFYIEVEPLPLDVVQ
                     ALREGEFGDGPVRSKDAKEVGDKFAAFGMKKDLMRKIYAIGGTNVLVNDTKGIQNIHE
                     TRELIIQSFEDVCKRGPLSEEPIMGVMVRLVDAKLHEDAIHRGPAQTIPAVRNAIKGA
                     MVRGKSSLMEPMQKLQVSAPNDVMGGVTRQITSRRGVIEDMPVEGSVTTVIGRVPVAE
                     TFGFSNDIRAASQGRATWNTENAGFEPVPPSLFHKTVGEIRERKGLKPDVPTETYYSD
                     "
     gene            complement(3784..4419)
                     /gene="rpsG"
                     /locus_tag="HA345_01185"
     CDS             complement(3784..4419)
                     /gene="rpsG"
                     /locus_tag="HA345_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HIH84000.1"
                     /translation="MSEDEIIEEPSVEAESPAKVPIAGIGTLVFGKWDAAEVTCDDPG
                     IAPYINLTTIGVPLSGGIHANQWFGKQRLSLIERFTNGLMRRGPNSGKKGATVSAMNK
                     ALDKIHDRTGENPLQILVNAVVNSAPCEGITRIRFGATSQPKAVDVSPSRRVDMAVRN
                     LTEGATSATVKSKRNLTQCIVNEVLKAAEGDVSSFAVSKREETERIAASAR"
     gene            complement(4430..4873)
                     /locus_tag="HA345_01190"
     CDS             complement(4430..4873)
                     /locus_tag="HA345_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008085533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HIH84001.1"
                     /translation="MGRGLFAGSKIKADRMRFRKKDRLVRKRMEKKARVGGVLKHDPL
                     RGSHQAKGIVTEKVNIEAKQPNSGLRKAVKLNLKGSGNKLTAFAPGDGAISFIDEHDE
                     VLVEGIGGRMGRSYGDLPGVRFKVIKVNGVSLDEMVRGRKEKPIR"
BASE COUNT         1273 a         1315 c         1104 g         1294 t
ORIGIN      
        1 aacactgatg ctgtggacat caagattcgt tcctttggta ggagtccagg gcgtgtgaat
       61 cgattcaaga caattaggaa ataaggtgcg acgacaagca tcccgactaa gagaacaatc
      121 ccccatctca atctaagcca tctttctggt gaatagacag tacttccttc aattaaatta
      181 cctaaactga acatccattg ttcaattatt tctttagaga ataatgcaat gattgtagta
      241 atgataaccc atattccaaa aacaagacgg aggtcctttg caaggatgcc aagatgttcc
      301 tcagcaggtc tcagatcatc caatgatgta cggaccatgt aaccctatca catcacatca
      361 tctggtgtag gttcggtatt cattgctaac catgttcgat acacgccgta taccgcccat
      421 gcactgcaaa agaacgttac agaccacaac attacgtctc caccatcagc cttcaccgtg
      481 actccaatgt aaaacagaat aatggcagca atcccacggc gaagaatctg aggataagcc
      541 aactcacgtg caagataaga tgggccttca ccacgtttcc gttcagttac ctctctctgt
      601 agaacagctc ctacaattag gaacagtaga ctactccaat agtagatatt ccccttaagg
      661 aatacatctg cagatagagc catttgtcgt ttatgctcga tttgatcttc agagatctcc
      721 gcaacaaaga gattctcata ggtaccaaca ctcacagtac gagttgtcaa gtcatcacca
      781 tcggcattag tcacggtgcc tggtggattg attgagaagg ataagatatt ccagtagtca
      841 ccctcgtcag ctcctccact gtcatcaaca gagttacctg ccacatagaa gaaaactgca
      901 ccagaatcct cgcttggtgc ggtccaagtg acaacccact gtccatctgc atcagtatct
      961 gactgtgata tgttgttgct ggtagaacgt gaagtcgaat cttcatcagt cgtcccggct
     1021 gcaggtcgga tgtcatattc ttcagtccaa gtgaatgtac ccatatcacc agatgacatg
     1081 aggaagcctc ctgcaacatt gccggattca cctgcaaggg tgttggcatc ttggaccttg
     1141 attgtcaatt cataggcaac atcaatctcg tattggattg gaacgccgga tacgctgaca
     1201 actgcacgat cggagggctg tccgttcaag ggcccaccga caccgtgaca cgtgcaaccg
     1261 tagattgcag taggattacc attattctcc accaaaggtg gtccttggtg ataagcaacg
     1321 gtaggcgcag caatcatgga gagcagaagg atgactacaa ccaatcgtgt cccgaggcgc
     1381 ataaccctca atcctcaaca cttcttagtt ctggatatcc ttaaccgttg ccaaatcaat
     1441 atcagtcagg aagtcaatcg gaatagtaag tctcagttgg cacatcgggc ttcaatccct
     1501 tgcgttcacg tatctctccg acagttttgt ggaagaggct gggtggaaca ggttcgaagc
     1561 ctgcattctc tgtattccag gtggcgcgac cttgactagc agcacgaata tcgttcgaga
     1621 aaccgaatgt ttcagcaaca ggaacacgcc cgataacagt agtaacactg ccttcgacag
     1681 gcatgtcctc gataacgcct cgacgagaag taatctgacg ggtcacacca cccatcacgt
     1741 cgttgggagc agatacctgg agtttctgca tgggttccat tagtgaggac ttaccacgca
     1801 ccatagctcc cttgattgca ttacgaactg ctggaattgt ctgggcaggg ccacggtgga
     1861 tcgcatcctc gtgaagcttt gcatcaacaa gacgaaccat aacgcccata atcggctcct
     1921 cagacagtgg tccacgtttg cagacatctt cgaaggactg gataatcaac tcacgtgtct
     1981 catggatatt ctgaataccc ttcgtatcat ttacaaggac attagtacct ccaatcgcgt
     2041 atatcttcct catgagatcc ttcttcatac cgaaggcagc gaacttatcg ccaacttcct
     2101 ttgcatcctt agatcgaact ggaccatccc caaattcacc ttcgcggaga gcttggacaa
     2161 catcgagtgg gagtggttca acctcgatgt agaagcggtt gtgccgatta ggtgacttgc
     2221 cttcaaacgc gtgaccattg ttatcgcctt cgatacattc ccgatagaca acaattggtt
     2281 cggagacatt gaccttgata ttctgctctt cttcaagacg atatactgag atttccaggt
     2341 ggagttcacc catacctgca agaagtgctt caccagtttc ctgattagtc gttacctgaa
     2401 gcgaagcgtc cgacttagca agtgtgcgaa gagcatcgac gaacttggga agatccttga
     2461 gtgctttagg ctcaatagct actgtaacta ccggttccga atagtgtcga atagcctcga
     2521 aaggagttgc atctgcttca cgagatattg tcacacctgc tgctgcacta cggatacctg
     2581 tgatagcgac gatgttacca gaagaaacct ctgggacctg aatcctgtca ccacctacca
     2641 tcatagcaac ctgctgtgca cgttcagcct tagaaccacc aagtgcccag agtgtctctc
     2701 cctgctttac tgtccctgag aaaatacgtc caaccgcgac ttcgcccgcg tgtggatcca
     2761 tccaaatctt cgtaatcata accgaaaggg ggccgtctga ttcacaatct aacatcgctt
     2821 taccggtttc agattcaaga tcaccttgcc agatgtttgg gatacgatac ttctgtgcgg
     2881 tcaacggacc agggaggcgt tcgactgcca tgtcgagaag cacttgatgc acaggtgctt
     2941 tctttgcaag ggctttctgc tcatcattat ggcagtgctc aaaaatatcc ttgaaattca
     3001 atccagtctt cttcatgaat gggatgctca taccccaatt gtagtaggcg ctaccaaacg
     3061 ccaccgtacc cgattgaacg tcaacctgcc attctttctt gtacttatca ggagcaaaag
     3121 ctgcaatcag tttgttgacc ttaccaatga ttttctcaaa acgcttcatc atctctgggc
     3181 catcaatttg taattcgtta atgaggcggt cgaccttgtt gatgaaaaga acaggttgta
     3241 cccgttcctt caacgcctga cgaacaactg tttcagtctg tggcatggtt ccttctacag
     3301 cacatgcgag aatgatacac ccgtcaactg ctctcattgc acgagttacg tctccaccaa
     3361 agtcgacgtg ccccggtgta tcaatgagat tgatgagata gttgtcctta tttccttcag
     3421 catcctctat ttcgtgcacc atcgatgcac tcgctgcgtt aattgtgatt cctcgagcgg
     3481 cctcttgctc atcgaaatca aggactcgac tcttacctgc aagatcttcg gacatcatcc
     3541 ctgcacctgc aatcaggttg tcactgagtg ttgtcttacc atggtcaatg tgagctgcaa
     3601 tagcaaggtt ccgaatgcgg tccctgtcgt gcatcacttg agttgcgatt ttgatgttgt
     3661 cttccttgcg gcccacggaa tcacccagtt attcttggcc acctgaaccg ggttcttaag
     3721 gagaacgcaa agagagacac agttcggcgt tcaaaccact gtgataaatg ggtaataacc
     3781 caatcatcgt gcagatgcag cgatgcgttc ggtctcttca cgcttcgata ctgcgaaaga
     3841 ggaaacatct ccttcagcag ccttcagaac ttcgttgacg atacattgag tcaaattgcg
     3901 cttactcttc acagttgcac tggtagcacc ctctgtgagg tttcggacag ccatgtcgac
     3961 cctacgcgaa ggagaaacat cgactgcctt gggttgcgag gttgctccga atcgaatacg
     4021 tgtgatacct tcgcaaggtg ctgagttcac aactgcgtta acgagtatct gaagagggtt
     4081 ctccccagtc cgatcatgaa tcttgtcgag agccttgttc atggctgaaa ctgttgctcc
     4141 cttcttacca ctgttagggc cccgtcgcat tagtccgttt gtaaagcgct caatcagaga
     4201 gagtcgttgc tttccaaacc actggttcgc atggattcct ccggaaagcg ggacgccaat
     4261 tgttgtgagg ttgatgtatg gtgcaatacc aggatcatca caagtaacct ccgctgcatc
     4321 ccacttgccg aatactagag taccaatacc agcgattgga accttggctg ggctttcagc
     4381 ctccacagaa ggctcctcga tgatctcatc ttcagacata cacatcacct caacggatcg
     4441 gcttctcctt acggccacgt accatctcgt ctagagacac gccattgacc ttgataacct
     4501 tgaatcgtac tccaggcaag tcaccatagg aacgtcccat gcgaccaccg ataccttcga
     4561 cgagaacctc gtcgtgttca tcaatgaaag agatagcacc atcgccaggt gcaaaagctg
     4621 tcaacttgtt tccagatccc ttgaggttga gttttactgc cttacggagg ccagagttgg
     4681 gctgctttgc ttcgatattg accttctcgg tcacgatgcc cttagcctga tgactgccac
     4741 ggagaggatc gtgctttagg acaccgccta cacgtgcctt cttctccatt cgcttgcgga
     4801 cgaggcggtc cttttttcgg aagcgcatac ggtccgcttt gatctttgat ccagcgaaca
     4861 gtccgcgtcc cacgagtcac tcagcccctt gaagcaattc gccgaccgtc cccccgtata
     4921 tgagagtgac ggggagactg tggttgattc acatctcatt ctctgcaata ttgaaggagc
     4981 atgaac
//
LOCUS       DUKB01000030            5951 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_89590, whole genome shotgun sequence.
ACCESSION   DUKB01000030 DUKB01000000
VERSION     DUKB01000030.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5951)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5951)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5951
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_89590"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            75..4166
                     /locus_tag="HA345_01195"
     CDS             75..4166
                     /locus_tag="HA345_01195"
                     /inference="COORDINATES: protein motif:HMM:NF022100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84002.1"
                     /translation="MDIDSSQTIAPAGSLASTAGLSSVNLSVDASTFLGTYALSGTID
                     IWSPLGTYHTETISSRDVTFTDAIATLSAPNNISVSPGSGTTLLFLLQNIGGVSDTFT
                     ITYSDVQDPDWMDTSLENPNDGDSVTMAAGEGQAITAPVDVPFDASRSDVDTITVTAT
                     SLNTGEIVTARASVMAGDLFSSDLQSNGSVVYVDPGAPASVFYTFKNTGTSPAHFEID
                     AGLQEVPDDWTISVSPDVTDLVSPGETRSITIEVTAPSILDPMDPDQRNSAGSRLTLR
                     VTSTPLQGEAALVASNITDIEVRASVSVTMLPYGDLHYTTSDLELGGMAKTLDVEVSL
                     MSNFPSGSPGLAVVDLTVLATSFTSYDGASYGLSENTRWDATPAPASLNLLLGESAIV
                     VLSVLGPTAHLPAHGLLNFTITASTSLSGLTGITSPDTSAVFSVNIGDVIDADLADSP
                     VIPGSPGVQSDATLRLSNIGNTLSNFTLEMDELEGWDLILVNNAVTGLAPQVATFPTG
                     FDVGTDITISATPPLDARADEVHLINVNVYDEEGHFMDNGSARFVLDEVIDGLLEPDT
                     INMEIPILESRTQTAVFQIRNMGNSEQTFDIDIGSFVGGTDFTVSPLQDVTVPPGANV
                     TQEVTVTALNSARADTTYSFDIILLKDGLEFDRTDVNVQIQQIHLIELSTTDTLEAIP
                     GEVVTLQVEAENLGNLREIGNLSFETPIGWTQTTTTFDIEPNSVVLGLEISLTVPALT
                     SEEVPMAGAVYDIPIIARNTSDNIPVGSFNITVTIKPVFQLVFLDSPERIASIPNQDR
                     SIGYHIKNAGNDAVTLSVTCTLDSSSVSRWTAPTCPGSLTLAQGEHTWINMTMRPTDN
                     RHWNKETGGMTLRFIPQGDVGGEANWTTPLIIERVQTDEEVVLQNSDGPVNTLEIDWM
                     HVPDLTQTGTLSSNTYEVRYVEGIRLLNSSLYPGTIWDFSLGSNQTSLIPGTVTPLGE
                     ASPYVENSFNLRTTLPSPTTIAPGDGWDLVFELHNLDEPSLGINGITTFIVKLRMDSY
                     ADPQILDVRFESGDLVEGTSTNLIVNVTNSGTAILPVNSILILSCSGDVIINGSESNL
                     IPPLGIQESVELTWGIEAASLPWYENSGSFECTFQLTLIDAVYGNDLANDVRVESLQI
                     ESWSIGFLPSLIGCILVIFLSLFLFRRGMDDDERALFGSGYVAMIGLGLLSHTAIIPE
                     IGLISVALSALWLLALAWIGSGELQAIHDDRRKAMLGERSALSSHEDELANTQREISW
                     VILGAPMLFVLVMMIDPSLTVDMTALNLGSSMAYLVLTSMMIILTITTLERTYGGLHN
                     QLAALDLRTQRIRGILESRSIVRTSAPPPPSPEVFTDVGGEEE"
     gene            4163..5008
                     /locus_tag="HA345_01200"
     CDS             4163..5008
                     /locus_tag="HA345_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84003.1"
                     /translation="MMENNPFDNSGAGGDASSRFLEQLTQRSVRVRHYLWNHRPLKAR
                     KDLREANRDAEFLEKQVVRLHRSLLALEQHLSSLDDLTEDERRAMGMVTDGLIDLDQG
                     HWESALESFRSAISDLSESGGRVNPFLVGRFFLTVEARWPAEMEHGLLLLTIENLGTD
                     LLPPFRLAAPAPPDWIAEPKAAEVPAIPPGGFIEMGIKIHPTGTISENLVLAKRVSIV
                     TGYLADMGDLTVSTRIENRTLKSLEGFVVDAWLPRGFTARRLPFIQNLAPGEVIHINT
                     EIDAR"
     gene            5104..5754
                     /locus_tag="HA345_01205"
     CDS             5104..5754
                     /locus_tag="HA345_01205"
                     /inference="COORDINATES: protein motif:HMM:NF014028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84004.1"
                     /translation="MNASKTQYKKNDDGASIGIGAMIVFIALILVAAVASTIIIKTAE
                     ELQQRAEATGDDTRDEISGKLQIVMAYVSIDDNAAPATAADEVTLIVQMAAGSDSTLL
                     TDIRWLIVCNDGTQNVDINTGALEDAGGAAGAARVFAEEIDGTAMTAGDAVDAGQTFA
                     IVIDTDDTGDDGANPSVDGCQAGVGDNQELRLIVDGGGETYSQLTFNSITAGSLIV"
BASE COUNT         1418 a         1470 c         1434 g         1629 t
ORIGIN      
        1 atctaaagct atagaatttg aatctgactg cagaagcatc tcttaccctc actcctgtag
       61 ccggaggggc ctcaatggac attgattcta gccaaacaat cgctcctgct ggttccttgg
      121 cttccacggc agggctatct tcagtcaatc tctccgtgga tgcatcgacc ttccttggga
      181 catatgctct tagtggcaca atcgatatct ggtcacctct cggcacttat cacactgaga
      241 ctatttcttc tcgtgatgtg accttcacag atgctatagc tacactttcg gctcccaata
      301 atatctcagt atctcctgga agtgggacca cgcttctttt cctcttacag aatattggcg
      361 gtgttagtga cactttcacc attacctact ccgacgtaca ggaccctgat tggatggata
      421 cgagcctcga gaatccgaat gatggtgatt cagtgactat ggcggcggga gaaggacaag
      481 cgattacagc accagttgat gtcccatttg atgcctcaag gtccgacgta gataccatta
      541 cagtcaccgc tacgagtttg aatacaggtg aaattgtaac tgcacgcgct tcagtcatgg
      601 ctggcgattt gttttcttcg gatttgcaaa gtaatgggtc agttgtctat gttgatccag
      661 gtgcccccgc ttctgtgttt tacactttca agaatacagg aacttctccg gcacatttcg
      721 aaattgatgc aggtttgcaa gaggttccag atgattggac catatctgta tctccagatg
      781 taaccgatct tgtatctcct ggtgagacaa ggtcaatcac aatcgaggtg acggctcctt
      841 caattttgga ccccatggat cctgaccaac gaaattctgc tgggagtcgg ctgactttac
      901 gtgtaacttc aacaccccta caaggggaag cggccctagt tgctagcaat attactgata
      961 tcgaggttcg tgcttcagtc agtgtcacaa tgttgccata tggcgattta cattacacga
     1021 ctagcgattt agagttggga ggtatggcaa agacgctaga tgtcgaagta tcattgatga
     1081 gtaatttccc ctctgggagt ccgggtttag ccgttgtaga tctcacggtt cttgccacat
     1141 ctttcacatc ctatgatggt gcatcctatg ggttatcgga gaatactcgt tgggatgcta
     1201 cccctgcgcc tgcatcgctt aatcttctac tcggagaatc tgcaatagtc gtgttatcag
     1261 ttctcggccc tacagctcat cttcctgcac atggtttact caatttcacc attacagcat
     1321 cgacttcttt gtcaggttta acggggatca cctctcctga cacttcagcg gtcttttctg
     1381 tcaatattgg cgatgtaatc gatgcagatc ttgcggacag tccagtaatt cccggttctc
     1441 caggagtaca gagtgatgcc accctccgac tatccaatat cggtaacact ctttccaatt
     1501 tcactcttga gatggatgaa cttgaggggt gggaccttat tcttgtcaac aacgcagtga
     1561 cggggctggc ccctcaggtc gcaaccttcc caacaggttt cgatgtgggt actgacatca
     1621 ctatcagtgc gacgccccca ctggatgcac gtgcagacga agtccatctt atcaatgtga
     1681 atgtctacga cgaagaagga catttcatgg acaatggatc cgctcgcttc gtccttgatg
     1741 aagtcattga cggcctactt gagccagata caatcaatat ggagattcca atccttgaga
     1801 gtcgtacgca aaccgcggta ttccagatta gaaatatggg taattcggag caaacattcg
     1861 atattgacat tggttctttc gtaggaggta ctgacttcac agtgtcgccg cttcaagatg
     1921 tcacagttcc tcctggtgca aatgtcactc aagaggtcac ggttactgcc ctcaactcag
     1981 cacgagctga tacgacctac tcgttcgaca tcattctcct taaggatggt ctagagtttg
     2041 atagaactga tgtgaatgtt cagatacaac aaatccatct tatcgaactc agtaccacgg
     2101 atactctgga ggcaatccct ggtgaggtgg tgactcttca ggtagaggca gaaaatcttg
     2161 gcaacctccg agagataggc aacctgagtt ttgaaacacc catcggatgg actcagacta
     2221 ctacgacatt cgatatcgaa cctaactccg tcgtattggg cctcgaaatc tctcttacag
     2281 ttccggctct aacctcggag gaagtaccga tggctggggc ggtatacgac atccccatca
     2341 ttgcccgtaa tacgagcgat aacatcccag tcggctcgtt caatatcact gtgactatca
     2401 agcccgtgtt ccaactcgtt ttccttgatt cgcctgagcg aatcgcgagt attccgaatc
     2461 aggatcgctc gattggttac catatcaaga atgccggcaa tgatgcagtt actctctcgg
     2521 tgacttgtac actggattcc tcaagtgtta gtcgatggac ggcgcctact tgccccggta
     2581 gccttactct ggctcaaggt gaacatactt ggattaacat gaccatgagg ccaactgata
     2641 accgtcattg gaacaaggaa actggcggga tgacattgcg tttcattcca caaggagatg
     2701 ttggggggga agcaaactgg accacgccat tgattattga gcgggtccag accgatgaag
     2761 aagtcgtcct tcagaactcg gatggtccag taaatactct agaaattgat tggatgcatg
     2821 tcccagatct cactcagaca ggcactcttt cctcgaatac atacgaagta aggtatgttg
     2881 aaggaatccg tcttctcaac tcaagccttt atcctggcac tatctgggat tttagcctag
     2941 gttctaatca gacgtctctt attccaggca ctgtaacgcc tcttggcgag gcatcaccct
     3001 atgttgaaaa ttccttcaat ctaaggacta ctctccctag tccgacgact atcgcccctg
     3061 gtgatggttg ggacttagtg ttcgaattgc ataatctcga tgaaccatcg ttgggaatta
     3121 acggaattac taccttcatt gtcaaactgc gcatggactc ctatgcagac cctcagattc
     3181 ttgatgtcag gttcgaatcg ggtgatcttg tagagggtac ctcgactaat ctcatcgtca
     3241 acgtcacgaa ctccggaact gcaattctac ctgtaaatag catcctcata ctatcctgta
     3301 gtggagatgt aataatcaac gggtctgagt cgaatttgat tccacctctt gggattcagg
     3361 agtctgtcga actcacatgg ggtattgagg ctgcgtctct gccttggtat gagaattcag
     3421 gttcctttga atgcaccttc caattaactc tcattgatgc cgtctatggt aatgatctgg
     3481 ctaatgatgt aagggttgaa tcgttgcaaa tcgagtcttg gagcataggt ttcctcccta
     3541 gtttgattgg ctgcattctc gtaatcttcc tttctctctt cctattccgg aggggtatgg
     3601 atgatgatga gcgcgccctc ttcgggtcgg gatatgtggc gatgataggg ctaggactgc
     3661 tttctcatac ggctatcatc cctgagattg gcctaatcag cgtagccctc tctgccctct
     3721 ggttgttagc tcttgcatgg attggctcgg gagagttgca agccatccac gatgaccgtc
     3781 gtaaggcgat gcttggtgag cgttctgctc tatcttctca cgaggatgag ttagcgaata
     3841 cgcagcgtga gatatcctgg gttattctag gggctccgat gctcttcgtc cttgtgatga
     3901 tgattgatcc gagtctcact gtcgatatga ctgccctaaa cctcggctcc agcatggctt
     3961 accttgtttt gacttcgatg atgattatac tcactatcac tacacttgag cgaacctatg
     4021 gtggactcca taaccagctc gcagctctcg atctccgaac tcagcgaatc cgcggtattc
     4081 ttgagagtcg ctcgatagtt cgtacatcgg caccacctcc tccgtctccc gaagtgttca
     4141 ccgatgttgg gggtgaagag gaatgatgga aaacaaccca ttcgataatt caggtgcggg
     4201 gggggatgcc tcgtcccgat tccttgagca gttgactcaa cgttccgttc gtgtccgaca
     4261 ctacctctgg aatcatcgcc cattgaaggc aagaaaagat ctcagggaag cgaatcgtga
     4321 tgcggaattc cttgagaaac aagtggttag gttacaccgt tcacttctcg ctctggagca
     4381 gcacctatct tcccttgatg atttaacaga agatgagaga agagcgatgg gaatggtgac
     4441 tgatggtctc atcgatttag atcagggtca ttgggaatct gccctcgaat ctttccgttc
     4501 agcaatttct gatttgtctg agtccggagg ccgcgtgaat cctttccttg ttggccgatt
     4561 cttcctcaca gtcgaggctc gttggcctgc tgagatggag catggacttc ttctgcttac
     4621 tattgagaat cttggtactg acttactccc tccattccgg ttggctgctc ccgctcctcc
     4681 ggactggatt gcggaaccta aggcggccga agtgcctgct ataccgcccg ggggcttcat
     4741 tgagatgggt atcaaaattc atccaactgg gaccatctct gaaaatctgg tattggccaa
     4801 gagggtatcc attgttacag gatatcttgc agacatgggc gatctaacgg tatccacccg
     4861 catagagaat cggactctca aatccctgga aggctttgtc gtcgatgctt ggctccctcg
     4921 tgggttcacc gctaggcgcc ttccgttcat ccagaatctt gcacctggag aggtcataca
     4981 tatcaacact gaaatcgatg cacgttgagc aattttgacc caaagttcgc atcttctttg
     5041 aaatgtctct tggggctact atgatatact tcgatgaatt gcgtaaagtc ggtggacata
     5101 cccatgaacg caagtaagac acaatacaag aagaacgacg atggtgcatc gatcgggatc
     5161 ggagcgatga tcgtcttcat cgcacttatc ttggtggccg cagtagcctc tacgattatc
     5221 atcaagaccg cagaagaact tcagcaacgt gctgaggcaa ctggtgacga cacccgtgac
     5281 gaaatctcgg gtaagctcca gattgtcatg gcctatgttt cgatagatga caacgcagcc
     5341 cctgcaaccg cagccgatga agtcactcta attgtccaga tggctgctgg ttctgactcc
     5401 accttgctta ccgacatccg atggttgatt gtttgtaacg acggaactca aaatgttgac
     5461 atcaacactg gagccctaga agacgccggt ggcgctgctg gcgctgcacg tgtattcgca
     5521 gaagaaatcg acggcacagc aatgaccgct ggcgacgctg tagatgctgg tcagaccttt
     5581 gcaatcgtaa tcgatactga tgatactggc gacgatggtg ctaatccatc tgttgatgga
     5641 tgtcaggctg gagtcggcga caaccaagag cttcgactta ttgtcgatgg cggcggtgaa
     5701 acctactctc agttgacttt caattccatt actgccggat cactgattgt ttgatgtggt
     5761 ttgtggaatc ggcccaattg cgggccgagc cgcagaccgc gaggtctaat ccataaggag
     5821 ttgaacagag atggttgaca gtcaggaagg tcgcatggct gatcgtttag atcaggcgtc
     5881 caaagtgaca gttgaccaga ttgacatccc acctgaatac cgtccaaccg atttagaagc
     5941 ctggttgttc a
//
LOCUS       DUKB01000031           14864 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_142163, whole genome shotgun sequence.
ACCESSION   DUKB01000031 DUKB01000000
VERSION     DUKB01000031.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 14864)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 14864)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14864
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_142163"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1124
                     /locus_tag="HA345_01210"
     CDS             <1..1124
                     /locus_tag="HA345_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84005.1"
                     /translation="TVITEHPNLAQSCRTVLLDPAEFKPHVIADWNGTTVPSSSVTFD
                     VLRGWGQNATWIHLESMADWAAIPHPGKGIIESTTVSLIEGPNHLLVDVEAVDSIVRF
                     ELEVILDTSAPILTSDILGNELLVNNPVVIMAGGCESSLLVRIDASGIEQTGECDTFG
                     RYAIELTLDSFDGMYPVVIRSVDPSGNIARLDRMIELDLTAPEALLGWEVDECDSREP
                     IRVVGDTPDTICNLVGAAALVDDDVDFWTVEFMHEGVYEESMTGFGAWNGSREFSISA
                     PAEGRWSMVLILVDEAGNERTHSIDTEIQGREATTSEGMLTFGTLSNSILVVILLISI
                     IGMTVLLGKNRPSVEKSGSEWVDQVFDDEGDYESPPTED"
     gene            1151..1999
                     /locus_tag="HA345_01215"
     CDS             1151..1999
                     /locus_tag="HA345_01215"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018465024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HIH84006.1"
                     /translation="MMITTIGVLGAGQMGNGIAQVAAIAGYNVVMVDIEQEYVDRGVA
                     TIQKSLNRLVAKERISQEDADSALARIDTATERSACADADLVVEAIPEIPEIKFSAFQ
                     DLDSICKPSAILATNTSSISIDAIAEKTSRPEKVIGMHFMNPVPVMKLVEVINGSDTS
                     DEVTEAVLSAAEKMGKTPLMCNDSPGFVSNRILCPMINEAILTLQEGVAEPEAIDGIM
                     KLGMNHPIGPLALSDLIGNDTVLHIMRVLHEGFGDDKYAPAPLLIEMVEQGKFGRKSG
                     EGFYTY"
     gene            2015..2389
                     /locus_tag="HA345_01220"
     CDS             2015..2389
                     /locus_tag="HA345_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004612990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HIH84007.1"
                     /translation="MQPGGTPQQHTFTQQANPNVQQQYPNAQAHYASTMNQIANPAVM
                     QSHLMQKSKMAYLLLGIFVGWLGVHNFYIGHTSRGLAQLLISVFTLGILAFIPAIWAI
                     IECIMLFTSQYPMDANGVLMRD"
     gene            complement(2391..2783)
                     /locus_tag="HA345_01225"
     CDS             complement(2391..2783)
                     /locus_tag="HA345_01225"
                     /inference="COORDINATES: protein motif:HMM:NF022281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2752 domain-containing protein"
                     /protein_id="HIH84008.1"
                     /translation="MRIARGAIELAVTGGALATSIILPHGEVDGLRLCPWYHLTGIEC
                     PFCGMTRGFVAISHLDLEAALSFNLGSPLIYGAFIAIFGRSIWAWRMGQLNDPPPLSE
                     KFTKPWLVTSIGVFGWMLYIRWIQPFLA"
     gene            2839..3096
                     /locus_tag="HA345_01230"
     CDS             2839..3096
                     /locus_tag="HA345_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017585263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HIH84009.1"
                     /translation="MAQPMEGAAAPMQGGVSDKDWLTTVLLSFFLGALGVDHFYTGKT
                     MTGILKLITVGGCGIWALIDLIMAITGNFKDGNGLPIQQQK"
     gene            3210..3596
                     /gene="eif5A"
                     /locus_tag="HA345_01235"
     CDS             3210..3596
                     /gene="eif5A"
                     /locus_tag="HA345_01235"
                     /inference="COORDINATES: protein motif:HMM:TIGR00037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HIH84010.1"
                     /translation="MPGTTRVEIRTLKVGRYVAVDENAYKILSISKSKPGKHGSAKAR
                     LELEDIFSGQKRSHVGTVTDNIQVPVIEKGSAIITHIQGNEVHAMDNKTYESLILPKD
                     DELTLESGGEIQWMEALGRYRITRDH"
     gene            3609..4106
                     /locus_tag="HA345_01240"
     CDS             3609..4106
                     /locus_tag="HA345_01240"
                     /inference="COORDINATES: protein motif:HMM:NF025054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HIH84011.1"
                     /translation="MVATTDEPLVEVHPALIQHLDGCIYAWSQLVSDQSMHDPRLDIN
                     SMDIDDVRNFLRRLILDRRLIVALESESIVGIATVAPDLNMLDHSGTVWNIADVWVEP
                     SRRRQGIARHLVKASEERAMLDGATEVRLQVYTSNDAASMMYGQLGYRTIIRTMRKRL
                     DEESS"
     gene            4159..6732
                     /locus_tag="HA345_01245"
     CDS             4159..6732
                     /locus_tag="HA345_01245"
                     /inference="COORDINATES: protein motif:HMM:NF015148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84012.1"
                     /translation="MSDVPRSVYRRPVTAKGIKAIEEGSLTWLDENMYNNLNTGVLEQ
                     YLEEKNIEEGFEISHWSTSKILIGILIGAVFSGVTAYIGLKIGLAVSAAWYVAYLLGM
                     ALKWSPSEVNISTSATTGATHASTGFIFTFPAIFLLAYSDNYKILGDDGTLVHLIQEP
                     DVMQLAFIGIIASMFAGFLGVMYFIIFRRVWLVEDPLPMPGFEATLKLLDIATDVNAG
                     AAESARESLKTVGVWTVITMGFMALIDYPLLWARKVASAPGSVMDWLVGLLSGEKWGL
                     ASVYTERWFHQPSSLQNSWTGGESMSHAPFNGITTYSKTNPFSYTFIGFELSPTLFAI
                     GWFMKFRPALLVNLGSLIAWFYLIPIAVMVDVPVYDATIGDHVRLSTYADTSSNPIYP
                     MLQWKAYLTIIRTIAIGAILGGGLLGLLKMAPTFINIFGDIRKAFGGEKSEEYIEGKG
                     WYEWPLMHIPIFMIIAFFAMILIFALGGFPILAAIIFALVLILTTFLLGAIAVRVMGE
                     TGIEPVSGTSFIVLLMLLLTFLYLGEPLGLAKEEAVLMALVGTTVFGSAISMSGTVVA
                     DYKNSLYIGNRPYHISKGNIMGVVPGAILGAAVAIFLSDLLANGKIELLAPQANAFAS
                     FTIVLYQGQGDWGALFLGMLLGAFAEWATGMGTAFGLGMYLPTPYTLPMLIGGGLRDR
                     WEDKSLKPIVEEVREKEGSGKAEQKRALMLLMTFMVAAGALTGEAFFGVEAAMFAVAD
                     ELTVEETYTEESWTDGYLDDLILGEYEGEAQWSEAVSWAESQNAANPDEPICSNISEE
                     SITCTVPMQVLSWYPMARLAGFVVANILLAAGVVALFARAGVISFGGKDDDVMDADIV
                     E"
     gene            6744..7697
                     /locus_tag="HA345_01250"
     CDS             6744..7697
                     /locus_tag="HA345_01250"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HIH84013.1"
                     /translation="MTRSAVPLHVWLILGAALVAVSSAGAVLQIIEGVPPILKASWRL
                     QATSVLLLPFAIMQWKKMDEESRQRFTEQRNLGILIGSGICLFLHFGLWVWSLDHTTL
                     THSLLFVTAHPLVFVVGLALLGRPLHVRQSFGAVIGFIGVAFTLIGAGGDGEVTLLGD
                     LAAFGGAIAIVGYLAAGRTLRNWMPLFVYAFPVTAIGAILLTIASMGIEGSAFSSVDT
                     NLSVFGWMDPIWLPAVIYLAIGPGLVGHTGINAVLRWISPVVISVSVMIEPILGTVIG
                     MILGTATAPDPWTWFGGGLILLGIYGVTTATGQKISADSEE"
     gene            7723..8643
                     /locus_tag="HA345_01255"
     CDS             7723..8643
                     /locus_tag="HA345_01255"
                     /inference="COORDINATES: protein motif:HMM:NF014077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84014.1"
                     /translation="MAVILLCNDDGVESPYLLGLASELQRRGHCILIYAPMEDQSGRS
                     MALTLRQDVETNNRNDLLNRMNLASEHPMPSIHEIDGTPCDCIILAIDGYIEHNGDPK
                     PDLCISGINVGPNMSVDLLHSGTVAAAREASLYGLPSIASSIAKHDPSVDPTMAIRLT
                     SNLAESVLKYALAGGQEYRRPRRSDASIVFDDEDSTLGRMFGQGDIYLNLNIPEDCSG
                     RIQASTVGARWYTGACNINEDGESKSLRVGSLSIEDDDIDGVASDSLSKGYASLTCLA
                     SWPQLHPLNVGDKALQQANIPGSDGLPRWI"
     gene            8653..8931
                     /locus_tag="HA345_01260"
     CDS             8653..8931
                     /locus_tag="HA345_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84015.1"
                     /translation="MVEDKSYRVATIIAIILAIGSILVFIYSFILIVKDEGQPSAGPM
                     AVTDGCCFGGIGLIGSCALISFSLLIQVVASYSYSNKQNYVQMIPAER"
     gene            9015..14243
                     /locus_tag="HA345_01265"
     CDS             9015..14243
                     /locus_tag="HA345_01265"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84016.1"
                     /translation="MENITFDDSGFYEGLEHSSWESEWIESEPSYVSSENGRGFSTTI
                     EWLSVQHQFRDCKGDHCLPIDPTAKEWMDRDVLPALLIFSRPGPSIETQNELIELGIE
                     LQENPWRDNIDTPILDESRLVSSFDDDFIDDFTRSIISDEDADFDINELGYSPPPDWS
                     LGAWASWVQASVGSDRAALHAPFRDNPDYWRIGDVWFASVTTEDLSHLVSNNLWPEIS
                     VKIPSLMRIDLDLKIGIHPPLDLDRKWTGTDTQLEPGVPPAWNHSAYNVPLRGDSIRV
                     ADFDTGIDVFHPAFFNPSNTPTNWIDANSNSVFDWGTDGIDYNGDSQLSINEKLLRIS
                     NGDGVDSIHRDTYYLDLDQDGEHDHGTSSIYNDASPGFGEPMYQANDLNSDGNLSTNE
                     HFLLLDESTILATYDPVSGERTRGTDLIQTAPDTNGHGTSVQGIIAANNEHHRFSGLA
                     PNVDLLSHDSFAGGFANGQSWALQKNADVMLYEVGGWTNRFLDGTDAVEMSLDQMANA
                     GIVQVNPAGNLGGSDKVMQGSLPDVDDSLGPLVTKFGVSSSNTPHNVYLTYLVPNGHN
                     ISSVKVKEPGQSSFTDLSNTSSAWLPGGTGVVISKGTSARNTTMLYLWFGVGSSSGLI
                     TGDWEVSIAGPSGQGRVLFRATANQNAGTWSGGTTWKTPSPTSLAAIGDNGSVTWPAT
                     ADSAITVASWASWGRAGSSAGELSHFSGRGTRIHDGRPMVDIASPGNYDIWSPKTNYG
                     GNFGTYRWFGGTSAAGPGVAAIAALMIQDNPGIGHHRVWNILNATGHWNSTTGELWNY
                     SSRLSGDVGDPTDVVGAVLLANGSWGLSHPYGTPLGNGVRAGDPMPGVHASDPDWGWG
                     YIRADRATQRDTLPPNISVANNVSFESLEPTNITLNVDDNAIGDGNPITMNVTCLENQ
                     SGTNVVTDYQENIALGSINCTFEEIGWNSITIEITDFSNNKQNSTINVSTVFGIPVQL
                     LSSSPTSLNVTTDDTFQIDATMRNAWGSERSLTSQEWTTGLSLNGNFIIDSVTNDSVV
                     IDPIKTGLHNLSLDLSNVSIWFEINVSQGLNHYAEFRIDSISNIPTNGMGHPIFSPDA
                     PINFEFKWYDEDNNSGEWENYTGNQVGYVISQNNSTNYHPAVDIESNDTLVGHWNNGE
                     FNPLREGEITLWIGLHNHSGDLVRSEVTIDVTPGTPHVLYLGGVSNNSMEIVAGNTFT
                     SRLYAYDLANNTVNITNHIWELNQSSINLSMAQSGFVQVELGTLGHSDLTLNVTGEHV
                     LVGRHTRLDGLELTLNLTVFVNPNSAESMIVHPSIVNITAGDYFDINTTLLDQFGNLI
                     NTSGITITHTSGLCRCNSSMGEWYSTISGVEYIFLNYDGINESVEVRISPSTISMIEV
                     GIGGNESIGYGDSRALSIIAYDEYNNSLNLNISEVNFTVIGSGLSIDGTNLLATAGGN
                     HSINGEFINQIGDTIQFQSVIFVWGDLDGDGLSDSIDKCPYHFGNSTWLDRLGCPPIS
                     MIEVGIGGNESIGYGDSRALNITAYDGYNNSLNLNISEVNFTVIGSGLSIDGANLLAT
                     AGGNHSINGEFINHIGDTIQFQSMIFVWGDLDGDGLSDSIDKCPYHFGNSTWDRLGCI
                     DDDGDGWSNPDTNWNVSQGADAFSSRSGAWSDSDFDGFPDQFGLIDSDSCEGHDDSID
                     LDNDGFVDGCDSFIGNDNEQEIQEDENANSSEDIIEEDGQGSGFTEFDPELRVMIFVI
                     LIIGLVIIWLRIRQSS"
     gene            14368..14649
                     /locus_tag="HA345_01270"
     CDS             14368..14649
                     /locus_tag="HA345_01270"
                     /inference="COORDINATES: protein motif:HMM:NF024890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84017.1"
                     /translation="MDAKDESWSVDEAITNLKNAMKENEQRASEVFSSIDANDDGKIN
                     GPELYKGLIDHIGDRLSPGQVSMIINALDTNDDNRIDLAELSAALEEEE"
BASE COUNT         3942 a         3102 c         3641 g         4179 t
ORIGIN      
        1 ggacagtaat cacggaacat cctaatctcg cacaatcgtg tcgtaccgta ctccttgacc
       61 ctgctgagtt taagcctcat gtcatcgcag attggaacgg tacaacagtc ccttcttcat
      121 cagttacttt tgatgtgtta cgtggatggg ggcagaacgc aacatggata catcttgaat
      181 caatggcgga ctgggcggct attcctcatc cggggaaagg tattattgaa tcaacaacag
      241 tatccttgat cgaaggtcct aatcatcttc ttgttgatgt agaagcagtg gatagtatcg
      301 tccgattcga actcgaagta atcctcgata cctccgctcc aatacttaca tcggatattc
      361 tcggaaacga acttcttgtg aacaatcctg ttgtaattat ggccggagga tgtgagtcga
      421 gtcttctagt gcgaattgat gcatctggca ttgagcagac aggggaatgt gatacattcg
      481 gccgttatgc cattgagtta accttggata gtttcgatgg catgtatcca gtagtcatac
      541 gttcagttga cccttcaggc aatattgctc gattagatcg tatgattgaa cttgacctca
      601 cagcacctga agcccttctc ggatgggagg ttgacgagtg tgattcaaga gaacccatac
      661 gagttgttgg tgatacacct gatacaattt gcaacctagt cggtgctgca gcacttgttg
      721 atgatgatgt cgatttttgg actgttgagt tcatgcatga gggtgtttac gaagaaagta
      781 tgactggatt tggagcatgg aacgggagtc gagaattctc catatctgcg ccagcggaag
      841 gccgttggag catggtactc atccttgtag atgaagctgg aaatgagagg acccacagta
      901 tcgatacaga gattcaaggt agagaagcaa ctacgtcgga ggggatgctc acattcggaa
      961 cactgtctaa ttcgattctt gttgttatct tgcttatttc tatcatcggg atgacagttc
     1021 tacttggaaa gaatcgacca agtgtagaaa aatcaggttc tgaatgggta gaccaagtat
     1081 tcgacgacga gggcgattat gaatctcctc caaccgagga ttgaagtccc ggatacattg
     1141 gtctcgttcc atgatgatta cgacaatcgg cgtgcttggc gcaggacaga tgggaaatgg
     1201 aatcgctcag gtggctgcta ttgcaggtta caatgtagtg atggtcgata ttgaacagga
     1261 gtatgtagat cgcggcgtcg caacgattca gaagtccctg aatcgtctcg ttgccaagga
     1321 aaggatttct caggaagacg cagattcagc tctagcacgg attgatacgg ctacagaacg
     1381 tagtgcatgc gctgatgcag accttgtggt ggaagctatt ccagaaattc ctgagattaa
     1441 gttcagtgca tttcaggatc tcgacagcat ctgtaaaccg tcagcaattc tcgcaacaaa
     1501 tacgagtagc attagtatcg atgcgattgc agagaagacc tcccggccag aaaaagtgat
     1561 tggaatgcac ttcatgaatc cagttcctgt gatgaaatta gttgaggtta tcaatggaag
     1621 tgatacttca gatgaggtta ctgaagcagt cctttcagct gcagagaaga tggggaagac
     1681 accattgatg tgtaacgata gtccaggttt tgtctcaaac cgaattctct gtccgatgat
     1741 taacgaagct atccttactc tgcaggaggg tgtagcagaa ccagaggcga ttgatggtat
     1801 tatgaaactc ggaatgaacc atcctattgg ccctctcgct ctctcggatc tcatcggaaa
     1861 cgatacagta ctccacatta tgcgtgttct tcacgaggga tttggagatg acaagtatgc
     1921 tcctgctcct ctcttaatcg agatggtgga acaaggtaag tttggacgca aatctggcga
     1981 ggggttctat acctattgat ttcaaggcat attcatgcag cccggtggca cccctcaaca
     2041 gcacacattc acccagcagg caaatccgaa tgtacaacag cagtacccaa atgcacaggc
     2101 acattacgcc tctaccatga accagattgc aaatcctgca gtcatgcaga gtcatctgat
     2161 gcagaagtca aaaatggcat atcttctgct tgggattttc gtcggttggc ttggcgtcca
     2221 caatttctac attgggcata caagtagagg actcgcccaa cttttgattt ctgtatttac
     2281 acttggtatc ctagcattta ttcctgcaat atgggcaatt attgagtgta tcatgctctt
     2341 tacttcacaa tatcccatgg atgcaaatgg cgttcttatg cgagattgat ttaggccaga
     2401 aacggctgaa tccagcggat atagagcatc catccgaata ctccgatact agttacaagc
     2461 caaggcttgg tgaatttctc agacaaaggt ggtgggtcgt ttaattgccc catcctccat
     2521 gcccatatgg agcggccgaa gattgctatg aatgcgccat agattagtgg acttccaaga
     2581 ttgaagctga gagcggcttc aagatctaaa tggctgattg caacaaatcc acgagtcatg
     2641 ccacagaatg gacactcgat tccggtgaga tggtaccagg ggcagagtcg caggccatct
     2701 acttcgccat gaggcaagat gatggatgtc gctagggcgc cccctgtgac tgccagttca
     2761 attgcccctc tcgcaattct cattatttcc atctttgtca gcacaatgga tatatgcttc
     2821 tgattcaggt tgcagtgtat ggcacaacca atggaaggcg ctgctgcacc aatgcagggc
     2881 ggagtttcgg acaaagactg gctaacgact gtactactga gtttctttct cggtgcactt
     2941 ggtgtagatc acttctacac aggaaagacg atgactggta ttctcaagct gattactgtc
     3001 ggcggatgtg gaatctgggc attgattgac cttattatgg caatcactgg aaatttcaag
     3061 gacggcaacg gcctaccaat ccagcagcag aagtgagtcc ttcaggactg attttacagt
     3121 gccgtcaagc cgttaggctg aacaatcttt gattgatatg tccctgattg tccggcaagg
     3181 ctgatatagc gtccaataga ggcgaagaca tgcctggcac gacacgtgtt gagattcgaa
     3241 ccctcaaggt tggacgctat gtcgccgttg atgagaacgc ctacaagatt ctaagcatct
     3301 ctaagtcgaa gcctggcaag cacggtagcg caaaggctcg tctcgaactt gaggacatat
     3361 tcagtggtca gaaacgcagc catgttggta ctgtgactga caatattcag gtgccagtaa
     3421 ttgagaaggg ttctgcaata atcactcaca ttcaggggaa tgaggtccat gcgatggaca
     3481 acaagaccta cgagtcactg atacttccca aggatgacga gttgacactt gagtccggtg
     3541 gcgaaatcca gtggatggaa gcccttggcc gctatcgtat cactcgcgat cactgatggg
     3601 gactcgttgt ggtcgctacg accgacgagc cactcgttga ggtccatcct gctctaatcc
     3661 aacatctcga tggatgcatc tacgcatggt ctcagttggt ttctgatcag agtatgcatg
     3721 atccgcgtct agacatcaac tcaatggata tcgatgatgt gaggaacttc cttcgtcgcc
     3781 taattctcga ccgtcgcctc attgtagccc ttgaatccga atccatagtg ggtattgcta
     3841 cagttgctcc cgatctcaac atgctggacc attctggcac tgtgtggaat atcgctgatg
     3901 tctgggtcga accttcacgt cgccgccaag gtattgctcg tcacctagtg aaagcctcag
     3961 aagagagagc tatgcttgat ggagcgactg aagtacgatt gcaagtttac accagcaatg
     4021 atgcagcatc catgatgtat ggtcaattgg gatatcgtac catcatccga actatgcgga
     4081 aacgattaga tgaagaatca tcttgactcg ggtgaagtat aaacggggaa tacacggaca
     4141 acaaccagag gttgtgtgat gtcggacgtc ccccgctcgg tctatcgccg cccagtcaca
     4201 gccaagggta tcaaggcgat tgaggaagga agtctcactt ggcttgacga aaacatgtac
     4261 aataatctca acacaggagt gttagaacag tacctcgaag agaagaatat cgaggaaggt
     4321 tttgagatat cgcactggtc cacatcgaag atcctcattg gtattctgat tggagccgtg
     4381 ttcagcggtg ttacagccta cattggactc aagattggtc ttgctgtttc tgctgcttgg
     4441 tatgtcgcat atctactggg tatggctctc aaatggtcac cttctgaagt caatatttca
     4501 acaagtgcaa caacaggtgc aacccatgca tcgacaggat tcatattcac atttcccgca
     4561 attttcctgc ttgcttacag tgacaactac aagattctcg gtgatgatgg gacgcttgtt
     4621 catcttattc aggaacctga tgtcatgcaa ctcgccttca tcggcatcat cgcctcgatg
     4681 ttcgcaggtt tcctcggcgt gatgtatttc atcatcttca gacgtgtctg gctcgttgaa
     4741 gatcctctgc ctatgcctgg ctttgaggca actctcaaac tactcgatat tgcaacggat
     4801 gtcaatgctg gggctgcaga gtcagctcgt gagtcgctta agacagtcgg agtatggact
     4861 gtcatcacaa tgggattcat ggctctcatt gactatccat tgctctgggc acgaaaggtt
     4921 gcttctgctc ctggcagtgt catggattgg cttgtgggcc ttcttagcgg tgagaagtgg
     4981 ggtctcgcat cagtttacac agagcgttgg ttccatcagc cctcatcctt gcagaactcg
     5041 tggacaggag gcgaatccat gtctcatgcc ccgtttaacg ggattactac ttacagtaag
     5101 acgaatccct tctcatacac tttcatcggt tttgaattga gtccgaccct cttcgcaatt
     5161 ggctggttca tgaagttccg accagccctc cttgtgaacc ttggttcact tatcgcttgg
     5221 ttctatctca ttccaatcgc cgttatggtg gacgttccag tatacgatgc aaccatcgga
     5281 gatcatgtgc gtttgagcac ctatgcagat acatcgagta atccaattta tccaatgctt
     5341 cagtggaagg cgtatctcac tatcattcgg acgattgcga ttggtgcaat ccttggtggt
     5401 ggattgttgg gacttctcaa gatggcccct acattcatca acatcttcgg tgatatccgc
     5461 aaggcattcg gcggagagaa gagcgaagag tacatcgaag gcaagggctg gtacgagtgg
     5521 ccgctaatgc atatcccgat tttcatgatt atcgccttct tcgcgatgat tctcatcttt
     5581 gctttaggtg gattcccgat acttgcagca atcatctttg cacttgtact cattctgaca
     5641 accttccttc taggtgctat cgcagtacgt gtaatgggag aaaccggaat cgaaccggtt
     5701 agtggcacat cgttcatcgt gctactcatg ctattgctaa ctttcctcta ccttggtgag
     5761 ccactcggtc tcgccaagga ggaagcggta ctcatggccc ttgtcggaac tacagtattt
     5821 ggaagtgcaa tctctatgtc gggaacagtc gttgctgatt acaagaatag cctgtacatt
     5881 ggaaacaggc catatcacat ctctaagggg aatatcatgg gtgtcgttcc aggtgctatt
     5941 ctcggtgctg cagtcgcaat attcctgtct gatctccttg ctaatggcaa gatcgaactc
     6001 ctagccccac aggccaatgc tttcgcctcc ttcaccatcg tcctctatca gggtcaaggt
     6061 gattggggag cactcttcct aggaatgctc ctaggtgcct ttgcagaatg ggcgacgggt
     6121 atgggtacag cctttggtct aggtatgtat ttgcctacac cttacacgct gccaatgcta
     6181 atcggaggtg gactccgtga tcgctgggag gataaatccc tcaagcctat cgtagaggaa
     6241 gtcagagaga aggaaggttc gggcaaggct gaacagaagc gtgctctgat gctcttgatg
     6301 acattcatgg tcgctgcagg tgcattgact ggtgaggcct tcttcggggt ggaagcagcg
     6361 atgtttgctg ttgccgacga actcactgtt gaggaaacct acactgagga aagttggacg
     6421 gacggttatc tagatgattt gattctcggt gagtacgaag gagaggctca atggagcgaa
     6481 gcagtctctt gggctgagtc acagaatgca gcgaatccag atgaaccgat atgttccaat
     6541 atatctgaag aatcaatcac ttgtactgtt ccgatgcagg tcttgagttg gtatcctatg
     6601 gcaagacttg ctggattcgt cgtggcaaac atcctgttag ccgccggtgt agtcgcgctc
     6661 tttgcccggg caggagtaat ctcattcggc ggcaaggatg atgacgtgat ggacgcagac
     6721 atcgttgagt gaggattcat cggatgaccc gcagcgcggt tcctctgcat gtatggctca
     6781 tcctcggagc tgcgttggtt gcagtatcga gtgctggtgc tgttctgcag attatcgaag
     6841 gagttccacc aatcttgaag gcatcttgga ggttgcaggc tacatctgtc cttttgctgc
     6901 cattcgcaat catgcagtgg aagaaaatgg atgaagaatc tcgacagaga tttacagaac
     6961 aaagaaatct tggaatcttg attggtagtg ggatctgcct ttttctgcac tttggtctct
     7021 gggtctggtc gctagatcat actacactaa ctcattccct tctgtttgtg actgcccatc
     7081 cactcgtttt cgttgtcgga cttgccttat tggggcgtcc actacatgtg cgtcaatctt
     7141 ttggcgccgt aattgggttc attggagttg ctttcacatt gattggagcc ggaggtgacg
     7201 gtgaagtcac attacttgga gatctagcgg cctttggcgg tgcaatcgca attgtaggct
     7261 atctcgcagc aggtcgaacg cttcgcaact ggatgcctct gtttgtctac gccttcccag
     7321 tgactgcgat tggtgcaatc ttgctcacga ttgcttcgat gggtatcgaa gggtcggcat
     7381 tctccagcgt agataccaac ctctctgtct tcggatggat ggatccgatt tggcttccag
     7441 cagttatcta tctagcgatt ggtccaggat tggtagggca cactggtatc aatgcagttc
     7501 tacgttggat ctcaccagtt gtaatctctg tatctgtaat gattgagccg attctcggga
     7561 ctgttattgg catgattcta ggcacagcaa cagcacctga tccatggaca tggtttggag
     7621 gcggactaat cctccttggt atctatggtg tcactactgc gacagggcag aagattagtg
     7681 ccgactccga agaatgatga agtatgcctt tcacgacagg gtatggcggt cattctgctt
     7741 tgcaacgatg acggtgttga gtcaccctat cttctcggtt tagcttcgga gttgcaacga
     7801 agaggtcatt gtatactgat ttacgctcca atggaggacc agtccggccg ttctatggcc
     7861 ctcacgcttc gacaggatgt tgagacgaac aatcgtaatg atctcctgaa taggatgaat
     7921 cttgcttcag aacatccgat gccctcaatc catgagatag atggaactcc ctgtgactgt
     7981 atcatactcg ctattgatgg ctatatcgaa cacaatggtg acccaaagcc ggacctctgt
     8041 attagcggga ttaatgtcgg acctaacatg agtgtcgatc ttcttcattc tggtacagtt
     8101 gccgctgcaa gggaggcttc actgtatggc cttccttcaa tcgccagcag tatagcgaag
     8161 catgatccat ccgttgatcc tacaatggcg attcgtttga catccaatct tgcagaatcc
     8221 gttctgaagt atgcattggc aggtggccag gagtatcgac ggcctagaag aagcgatgct
     8281 tcaatcgttt tcgatgacga agattcaacc ttaggtagaa tgtttggcca aggggatatc
     8341 taccttaatc tcaacattcc tgaggattgt agtgggagga ttcaggcatc cactgttggt
     8401 gcacgctggt acactggggc ttgtaacatc aacgaggatg gagaatcaaa atcgctccgc
     8461 gtgggtagtc tttcgattga agacgatgat attgacggtg tagccagcga ttcactttcg
     8521 aagggctatg cgagtctgac ctgtctcgca tcttggccgc aactccatcc gttaaatgtc
     8581 ggtgacaagg ctttacagca agcaaacatt cctggttcgg atggtttacc gagatggatt
     8641 tgatgtgaaa ttatggtaga ggataagtcg tatagggtag cgactattat tgcaataata
     8701 cttgcaattg gttctatttt ggtattcatt tattcattta ttttaattgt taaagatgaa
     8761 ggacaaccat cggctggtcc aatggcggtt actgacgggt gttgctttgg tggaatagga
     8821 ttgattggtt cgtgtgcgct aatctcgttt tctttgttga ttcaagtagt tgcttcatat
     8881 tcatattcta ataagcagaa ctatgtgcaa atgattcctg cagagagatg attattttgc
     8941 atccgaatca taggttcaat gctattatca tgatagcgat gttcatcata ttcccttgga
     9001 gttacatctc tccagtggag aatattacgt ttgacgatag tggtttttac gaaggattag
     9061 agcatagttc ttgggaatct gaatggattg aatctgaacc gtcttacgtc tcatcagaga
     9121 atggtagagg attttcaacc accatagaat ggttatcggt tcaacatcag tttagagatt
     9181 gtaagggtga tcattgtctg ccgattgatc caacagcaaa ggaatggatg gatagggacg
     9241 ttcttcccgc tcttctgatt tttagtcgtc ctggaccatc cattgaaacc cagaatgaat
     9301 tgatagaatt agggattgag ttacaagaga atccttggag agataacata gataccccaa
     9361 tactcgatga atcgagatta gtaagcagtt ttgatgatga ttttattgat gatttcacta
     9421 ggtcgataat atctgatgag gatgctgatt ttgacataaa tgaactgggt tactccccac
     9481 ctccagattg gtcattgggg gcttgggcat catgggtgca agcaagcgta ggatcggata
     9541 gagcagcctt gcatgctcca ttcagagata atcccgatta ctggcggatt ggagatgtat
     9601 ggtttgcctc agtaacaact gaagatttat cccacttggt ttccaataac ctctggcccg
     9661 aaatctcagt gaaaatccca tcactgatga ggatagattt ggatttaaaa ataggaattc
     9721 atccccccct tgatctagat agaaagtgga ctggaactga tactcaatta gaacctggag
     9781 ttcctccagc ttggaatcac tcagcataca atgtcccact aagaggtgat agtattcgag
     9841 tagcggattt tgatactgga atcgatgtat ttcatcctgc gtttttcaat ccaagtaata
     9901 cccctaccaa ttggatagat gcgaacagta actctgtgtt tgattggggc actgatggaa
     9961 ttgattacaa tggcgatagt caattatcaa taaatgagaa attactccgg atatcgaatg
    10021 gtgatggtgt tgattcaata catcgagata cctattattt ggatttagat caggatggtg
    10081 agcatgatca cggtacgtca tcgatataca atgatgcatc accgggattc ggcgaaccaa
    10141 tgtatcaggc aaacgatttg aattcagatg gcaatctatc caccaatgaa cacttcctgc
    10201 ttctcgatga atctacgatt ttagcaacat atgacccggt tagtggtgaa cgcactaggg
    10261 gtacggatct gattcaaact gctccagata ccaatggtca tggtacaagc gtgcaaggga
    10321 taatcgctgc caacaatgaa catcatagat tttcaggatt agctccgaat gtcgatttat
    10381 tatctcatga ttcctttgct ggagggtttg cgaacggaca atcttgggct ctccaaaaga
    10441 atgcagatgt aatgctatac gaagttggtg gttggacgaa tcgtttccta gatggaactg
    10501 acgctgtgga aatgagtcta gaccagatgg ctaatgctgg catagttcaa gtgaacccag
    10561 caggcaatct tggtggttct gacaaagtta tgcaaggttc actccctgat gttgatgatt
    10621 cacttggtcc gttggttact aaattcggag ttagttctag taacacgcca cataatgtct
    10681 accttaccta ccttgtaccg aacggccata atatctcttc agttaaagtc aaagaacccg
    10741 gtcaatcatc atttacggac cttagtaaca cttcatctgc ttggctaccc ggaggtacag
    10801 gcgttgtgat atcaaaaggg acgtctgcaa ggaataccac tatgctgtac ttgtggtttg
    10861 gtgtcggctc ttctagtggc ttaattacag gcgattggga agtatcgata gctggtccat
    10921 ccggacaagg tagagttcta ttcagggcta ctgctaatca aaatgcaggg acttggtccg
    10981 gcggtacgac ttggaaaaca ccctccccca cttcactggc tgccatagga gataatgggt
    11041 ccgtcacttg gccagcaaca gctgattctg cgattactgt ggcatcatgg gcgtcatggg
    11101 gtagggctgg ctcttctgct ggtgaattgt ctcacttctc aggaaggggg actcggattc
    11161 atgatggtcg gccaatggta gatattgcaa gtccaggaaa ctatgatatt tggtctccta
    11221 aaactaacta tggaggaaat tttggaacat acagatggtt tggaggtact agtgctgcgg
    11281 gcccaggagt tgcagcaatt gctgctttga tgattcagga taatccgggt attggccacc
    11341 atagggtatg gaatatactc aatgcaacgg gccattggaa ttcgaccacg ggagaactct
    11401 ggaattattc atctagactt tcgggagatg ttggcgaccc aacagatgtt gtcggagcag
    11461 tattgttagc gaatggtagc tgggggcttt cacatcctta tggcaccccg ctcgggaatg
    11521 gggttcgagc aggagaccca atgccaggtg tacatgcgtc agatcctgac tggggatggg
    11581 gttacattag agctgatagg gctacacaaa gagacacatt acctcctaat atctctgtag
    11641 caaacaatgt ctcatttgaa tctctggagc cgacaaatat cacactcaat gttgatgata
    11701 atgcaatagg cgatggtaat ccaattacta tgaacgtaac atgtttagag aatcaaagtg
    11761 gtacaaatgt agtgacagat tatcaagaaa acattgcact tggatcaatt aattgcactt
    11821 tcgaggaaat cggatggaat tcgattacta ttgagataac agatttttct aataataaac
    11881 aaaattcaac aatcaatgtg tcaaccgtat tcggcatacc tgttcaattg ctaagctcct
    11941 ctccaacatc tcttaacgtt acaactgatg atacgtttca aatcgatgca acaatgagaa
    12001 atgcatgggg ttctgaacgg tctctgacgt ctcaagaatg gactactggc ctgtcgttaa
    12061 atggaaattt catcatcgat tctgtaacaa atgattctgt agtcattgat cctatcaaaa
    12121 cgggtttaca caacctatca ctggatttgt ctaacgtttc tatatggttc gaaatcaatg
    12181 tctcacaggg cctgaatcat tatgctgaat ttagaatcga ttcaatttca aatataccga
    12241 caaatggaat gggtcatcca attttcagtc ctgatgctcc aatcaatttt gaattcaaat
    12301 ggtacgatga agataacaat tcaggtgaat gggaaaatta tactggaaat caagtgggat
    12361 acgtaattag tcaaaataac tcgacaaatt atcatcctgc tgtagatatt gaatcgaatg
    12421 acaccttggt aggccattgg aataatggtg aattcaatcc gcttcgtgaa ggagaaatca
    12481 cactttggat tggtttacat aatcattcag gagatttggt tagaagtgaa gttacaatcg
    12541 atgtgacgcc tggaacacct catgtattgt atctgggggg tgtatcaaat aattcgatgg
    12601 aaatagtggc tggaaatacg ttcacttcca gattgtatgc atatgatttg gccaacaata
    12661 ctgtgaatat caccaaccac atctgggaac tgaatcagag cagtatcaat ttgagtatgg
    12721 ctcaatccgg ttttgttcaa gttgaattag gcacacttgg gcattctgat cttacactaa
    12781 atgtgacagg ggaacatgta ttggttggca gacatactag actagatggc ttagaattaa
    12841 cattgaatct aacggtcttt gtgaatccta attcggctga atcaatgatt gtccatccct
    12901 caatagtgaa tataactgca ggcgattatt ttgatatcaa cactacattg ctcgatcaat
    12961 ttggtaacct aatcaataca agtggaataa ctatcacgca tacatctggc ctatgtcgtt
    13021 gtaactcctc tatgggtgaa tggtatagca caatttcggg tgtggagtat atcttcttga
    13081 attatgatgg gattaatgag agcgttgaag tgaggatatc tccatctact atctcgatga
    13141 ttgaagtggg tataggagga aacgaatcaa ttggatatgg tgattcaaga gctttgagta
    13201 tcatagcata tgatgaatac aataattctc taaatctgaa tatctctgaa gtcaatttta
    13261 ccgtaatagg ttcgggattg agcatagatg gtacgaattt actggccact gctgggggaa
    13321 atcactctat caatggtgaa ttcattaatc agattggaga cacaatccaa ttccaatctg
    13381 tgatttttgt atggggggat ttggatgggg acggtctctc agattcaatc gataagtgcc
    13441 cttaccattt tggtaattcc acctggttag atcggttagg ctgccctcct atctcgatga
    13501 ttgaagtggg tataggagga aacgaatcaa ttggatatgg tgattcaaga gctttgaata
    13561 tcacagcata tgatggatac aataattctc ttaatctgaa tatctctgaa gtcaatttta
    13621 ccgtaatagg atcgggattg agcatagatg gtgcgaattt actggccact gctgggggaa
    13681 atcactctat caatggtgaa ttcattaatc atatcgggga cacaatccaa ttccaatcta
    13741 tgatttttgt atggggggat ttggatgggg acgggctctc agattcaatc gataagtgtc
    13801 cttaccattt tggtaattcc acttgggata gattaggttg catcgatgac gatggagatg
    13861 ggtggtctaa tcctgatact aattggaatg tgtctcaagg tgcggatgcc ttctcatcaa
    13921 gaagtggagc atggtctgat tctgactttg acggattccc tgatcaattc ggattgatag
    13981 attctgattc ttgtgaaggt catgacgata gtatcgatct cgataacgat ggatttgtag
    14041 atggttgtga ctcttttatt gggaatgata atgagcagga aattcaagaa gacgaaaatg
    14101 ccaattcctc tgaagatata attgaagaag atggacaagg aagtggtttt acagagttcg
    14161 atcctgagtt aagagtgatg atttttgtaa ttctaattat cggcttagtc attatttggc
    14221 tgagaatacg acagagctct tgaaatcaag atgtgatgaa tcaaatcgtc gccatagcaa
    14281 cctcactctg atcgtaaggg cctctggata aacatactaa caactttcga tgaacatgtc
    14341 aataaggtac ccaattatac ggaaattatg gatgctaagg atgaatcatg gagtgttgat
    14401 gaggccatta caaatctgaa gaatgcaatg aaagaaaacg aacaaagagc aagtgaggta
    14461 ttttcttcca tcgatgcaaa tgacgatgga aaaatcaacg gcccagaatt gtacaaggga
    14521 ttaattgacc acatcggcga tcgtctgtcc cctggtcaag tttcaatgat catcaatgca
    14581 ttggatacaa acgatgacaa ccgaatcgat ctcgcagaac tttctgctgc tcttgaagaa
    14641 gaggaatagt agttgcaagg gtacccatgc gaccaccggt gatacagagg ggagccctct
    14701 gtatttatca agcgggttat tgtggaattc acatgactct aggtacgggt aactgcccca
    14761 agtgtgggat ttcagattgg aaattaccca gacacgttag aacacgagga gttacatcgg
    14821 cagtgactgc agatttgaac atcattacct gtaacaaatg tgga
//
LOCUS       DUKB01000032            7922 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_183504, whole genome shotgun sequence.
ACCESSION   DUKB01000032 DUKB01000000
VERSION     DUKB01000032.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7922)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7922)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7922
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_183504"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(63..2024)
                     /locus_tag="HA345_01275"
     CDS             complement(63..2024)
                     /locus_tag="HA345_01275"
                     /inference="COORDINATES: protein
                     motif:HMM:NF025873.1,HMM:NF026066.1,HMM:NF026141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HIH84018.1"
                     /translation="MASIHGWSLPRSRRDQPPFFSKSQVISVLEQVGILLQLVGANPF
                     RIRAYQNAARTLSSHESDLWNEIQAGTLTEIKGVGKGIAGLISEALSEGTWGDLESLY
                     ERVPKGLIEMLGVPGLGPKRIKQFYDELGIESIAELRSAAEEGALSTLPRMGKKMEEK
                     IIEGIDLLARFTGRRRLDVGLMYGEAFETQVAAISGVQRAQLAGSARRRKESIGDLDV
                     VAAVNLEDAQEVMEALISIPGVAEVKGAGDSKVSLILESTLFEHHNPSTTIDGAVLNA
                     LGGDAWEELEANSTIDAQVRLVPPHVFAYTMAYFTGSKEHNVRMRQRALDLGLRLNEF
                     GLFPVDEAGDSKGYEAAKAYGLPSTEESDIYAHLGMKWVPPELREDTGEIEAAMSDKL
                     PNLIEPTQVNGALHNHTTASDGTATLEEMAETAMNLKWQFLGIADHSESLNIGGRSIG
                     IPNEEVAEQGEEIRSLNEKWVDSGVDFRLLHGSECDIFADGKLDYPENVRRNLSHVVG
                     SVHALGSRKNRDEIENTEMLIRAIEDPTFTILGHPTGRIIGGRDGFPVDMHAVLRRMG
                     ELNQEGVLKACEINASPYRLDLDWRLCKYAKAQGVPIVINPDAHAPQGLTDVWFGVQI
                     ARKGWLESEDILNCLTGAEIEQRMIEGRS"
     gene            complement(2151..2921)
                     /locus_tag="HA345_01280"
     CDS             complement(2151..2921)
                     /locus_tag="HA345_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011281819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriorhodopsin"
                     /protein_id="HIH84019.1"
                     /translation="MFALLTTALAMIGTVAAETSLLREDDTVGASFWIATAMMFAATA
                     FFIMERGSVAPKWRTSMTVAALVTGVAWYHYTYMREAWAQTYAAGAGQSPLVLRYVDW
                     LITVPLQVAEFYLILAAVGAATAMLFWRLFGASLIMLISGYLGEAGHAPEMPMLVIGC
                     IAWFYIMYEVWAGDAKKGADTASEGTQFAFRAMAIILTVGWAIYPIGYFMGTGDNPNV
                     DFLNILYNLADSVNKVAFGLMVWYAATMDTKASASAEE"
     gene            3104..3442
                     /locus_tag="HA345_01285"
     CDS             3104..3442
                     /locus_tag="HA345_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84020.1"
                     /translation="MLELAETVISWSCGTIVVIWISIGTLARSIRLEHIAHNTVTLLC
                     FLTAAGLIVFDRLGGEFWDTEPLANFLALMLVILGIVGQIIPIRGEEIQGEPNPHHLM
                     KARKERESEE"
     gene            complement(3461..3745)
                     /locus_tag="HA345_01290"
     CDS             complement(3461..3745)
                     /locus_tag="HA345_01290"
                     /inference="COORDINATES: protein motif:HMM:NF013286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84021.1"
                     /translation="MMVDKQLILDSVGPVQAVLDAHDGIVNVVDTTDGIVTISLEGGC
                     TGCGSTPMTAMQIYYSLMKLDEVNDVVFLNGELPEYMRQFIDEKLASEAE"
     gene            3906..6089
                     /locus_tag="HA345_01295"
     CDS             3906..6089
                     /locus_tag="HA345_01295"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011341752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-translocating pyrophosphatase"
                     /protein_id="HIH84022.1"
                     /translation="MEPEQLAQIGIALAVFGLLTAFLLYRRNDSIVIDNEVVADITGQ
                     IQRGAMAFLGAEYRYLAIFVSIVALLLLGGGEMNDALGWETAAAFLFGALASVLAGYS
                     GMRSATSANGRTAMAAKNGGQAEALEVSYNGGAVMGLAVGGLGLLGVSAMYLWLGPYG
                     SDPSFDAIPYIAGFGMGASSIALFARVGGGIYTKAADVGADLVGKVEAGIPEDDPRNP
                     GVIADNVGDNVGDVAGMGADIFESFVGSIIAAMVIAAAAGATAKSAAVAAVGSGDLAN
                     AVLQGATAEYQGALVLLPIALAVVGYFASIIAVFSMRVLKNMGDAAAALRYTTFIGAG
                     LFWVGGYLIMGPSGMDMEAYAAAAGIENAFGPLYAVIAGSVVGILIGLATEYYTGIEP
                     VMGLNVRDIPYIGEMSKTGPATNAIAGLSVGMKSVFVPIIFMAIGIYIANDFAGLYGI
                     AMAAMGMLATVGVTMTVDAYGPVADNAGGIAEMGELGSEVREITDALDSIGNTTAAVG
                     KGFAIGSAALTALALFAAFRAAVETLDPTFTMELTDPMVVIGLLIGGALPFVVAAMTM
                     TSVGKAAGEMVTEIRRQFKEIDGLLEGKPGVKPDSARCVDISTKAALREMVAPGVVAI
                     ASPVIVGLILGPETLGGLLAGATVTGVLMALFMANAGGAWDNAKKAIEQGHIDGAEKG
                     DAAHSAAVIGDTIGDPFKDTSGPSLNILIKLMSIVSLVIVPLIAL"
     gene            6167..>6441
                     /locus_tag="HA345_01300"
     CDS             6167..>6441
                     /locus_tag="HA345_01300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84023.1"
                     /translation="MRAYLLSLLMVTVSLAGCVSNEAITESDIGNTTNDELSLPDWQI
                     GDQWLYTFITPEFGEDSTRLVVADIREDDGLFMLGISSEGEAQRHAV"
     assembly_gap    6442..6752
                     /estimated_length=311
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            6799..7449
                     /locus_tag="HA345_01305"
     CDS             6799..7449
                     /locus_tag="HA345_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84024.1"
                     /translation="MDGLSVYENGEPQSVFNFPWEVGNTWDFRLLGQDWSANTDNIYN
                     GEVTVSAISGEGHTLSYVFSGREGFIKSLLWTDNEGVDHLQMNLNEKKTGYSGDVFFY
                     RAGDIHDNLYEENDQEIYDTFLDEGYSPNEAWDTLVWYLDVEISQQGGSGSLSIKDHQ
                     GASPLTRAWGAGATEKGSFGTIPSNSGDHSITVTLRGQDSLVHLKVAGALVRSWTL"
     assembly_gap    7458..7757
                     /estimated_length=300
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7783..>7922
                     /locus_tag="HA345_01310"
     CDS             7783..>7922
                     /locus_tag="HA345_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84025.1"
                     /translation="MPTLVMMHGLTGTAEMIRPLAESILSPGMRLILPQASIPHPNRG
                     FA"
BASE COUNT         1703 a         1737 c         1807 g         2064 t
ORIGIN      
        1 tggagtttca ggatagagtt cgtccaacat ctgtccgatg cgttccgctt tctctattcg
       61 tttcatgatc gcccctcaat cattcgttgc tcaatttctg cacctgtgag gcagttgaga
      121 atatcttcac tctctagcca cccctttcgg gcgatttgta cgccaaacca aacatcagtg
      181 agcccttgtg gggcgtgggc atctggattg attacaattg gcacaccctg cgcttttgca
      241 tatttacaga gcctccaatc gagatctaat cggtatgggc tcgcattaat ctcacaggct
      301 ttgagaaccc cttcttgatt cagttcaccc atgcgcctaa gcactgcatg catatccact
      361 gggaatccat ctctgccccc aatgattcga ccggttggat gcccgagtat ggtgaaggtg
      421 gggtcctcaa tagcacgaat tagcatctct gtattttcta tctcatctcg atttttccta
      481 gaaccaaggg catggacgct acccacgacg tgggagagat ttctacggac gttttcgggg
      541 tagtctaact tcccatctgc aaagatgtca cattccgatc catgtagcaa tcgaaaatcg
      601 actcctgaat cgacccattt ctcgtttaga gaacggattt cctctccttg ttcggcgact
      661 tcctcatttg ggatgccgat acttctcccc cctatattca gcgattcgga atggtctgct
      721 atgccgagga attgccattt gagattcatt gcagtctctg ccatttcctc aagggtcgca
      781 gttccatcag atgccgtggt gtgattatgt agggctccat tcacttgagt tggttcgatt
      841 aggttaggga gtttgtccga cattgcggct tcaatctcac cagtatcttc tctcaattct
      901 ggtggcaccc atttcatccc aaggtgggcg taaatgtccg attcttcagt ggagggtaat
      961 ccatacgcct ttgctgcttc gtatcccttt gaatcacctg cctcatctac aggaaataat
     1021 ccaaactcat tcaaccgaag tccaagatcc aaggcccgtt gccgcattcg gacattgtgc
     1081 tccttgcttc ctgtgaagta tgccatggtg tacgcaaaga cgtgtggggg tacaaggcga
     1141 acttgcgcgt caattgtcga attagcttcc aattcctccc aagcatctcc accaagagcg
     1201 ttgagaactg ccccgtcgat tgtagtggag ggattgtggt gttcgaataa agtggattca
     1261 agaatcagac tgacctttga atctcctgca cccttaacct cagcaactcc aggaatggat
     1321 atcagggcct ccatcacttc ctgcgcatcc tcaagattga ctgcagcgac aacatcaaga
     1381 tcaccgattg attccttacg tcgacgagct gatcctgcaa gttgtgctct ttggactcct
     1441 gaaattgccg caacttgagt ttcaaatgcc tctccataca tcaggccaac atccagtcgt
     1501 cttcgtccgg tgaatcgtgc taagagatcg ataccctcga tgattttctc ttccatcttc
     1561 ttgcccattc tagggagtgt tgagagcgct ccttcttctg ctgctgaccg tagttctgca
     1621 atactttcga ttccgagctc gtcgtagaat tgcttgattc tcttggggcc gagacctggg
     1681 actcctaaca tctcgattag gccctttggt actcgttcat acaatgattc aagatccccc
     1741 caagttccct cacttagtgc ttcggaaatt agcccagcaa ttcccttgcc tactccttta
     1801 atttcggtta aagtgccggc ttgaatctca ttccataggt cactttcgtg acttgacaga
     1861 gtacgggctg cattttgata agcacggatt ctgaatggat tcgcacctac aagttggaga
     1921 agtatcccaa cttgctcaag gacagagata acttgactct ttgaaaaaaa cgggggttga
     1981 tcccttcgac tacgaggcag gctccatccg tggatgctgg ccatatcgat tctttgtctc
     2041 gacgggtctt gaagcatcgt ttacgatgaa ggttgaggcg gaggtgggta acatgggacc
     2101 cacccccgcc tcgcaggggt catttcagaa tcgtcagacg attttgaatt tcattcttca
     2161 gcagacgcag atgcttttgt atccatggtt gcagcatacc acaccattag tccgaaagca
     2221 accttgttga cagagtcagc taggttgtag aggatgttga ggaagtcaac atttgggtta
     2281 tctccagttc ccatgaagta tcctattggg tagatggccc atccaactgt taggataatt
     2341 gccatggcac ggaaagcaaa ctgagttcct tcggaggcag tgtctgctcc tttcttggcg
     2401 tctccagccc acacctcata catgatgtag aaccaagcga tacatccgat caccaacatt
     2461 ggcatttcag gcgcatgacc tgcttctccg aggtatccac tgattagcat gattagagat
     2521 gcgccaaaga ggcgccagaa cagcatagca gtggctgccc ctacagcagc caggattagg
     2581 tagaactcag caacttgcag tggcaccgta atgagccagt cgacatatct gagaactaga
     2641 ggactttgac cggctccagc ggcatatgtc tgtgcccatg cttctcgcat gtatgtgtaa
     2701 tggtaccacg caacacctgt gactagtgca gcaacggtca ttgatgtgcg ccacttaggg
     2761 gcaacacttc cgcgttccat aatgaagaag gcagttgctg caaacatcat tgctgtagca
     2821 atccagaagg aagcacctac agtgtcgtct tcacgcagca aacttgtttc tgcggcaacg
     2881 gtaccaatca tggctagggc agtcgttagt agagcaaaca ttgcaccact ctggcgtgtc
     2941 agtttcagtg gattcttata tcccatgaaa aaaacctcca tgtcgtataa ggtataaaca
     3001 ggtgttagag tccttattga ttgaatcgat agacgcgatt aaagtgtacc gttgatacaa
     3061 tcaattttag cccagtagag tgcccctccg aataggtcat cggatgcttg aactcgccga
     3121 gactgttatc tcttggtctt gtggcacgat tgtagtcatc tggatctcga taggtactct
     3181 tgcacgatcg ataagactag aacatatcgc ccataatact gtcacactgc tctgtttcct
     3241 cactgctgct gggctaatcg tcttcgatcg cttgggaggc gagttctggg atacggaacc
     3301 attggctaac ttccttgctc tcatgcttgt aatcctagga atagtgggcc agattattcc
     3361 gattagaggt gaagagattc aaggtgaacc caatccacat cacctgatga aggcacgtaa
     3421 agagagggaa tccgaggagt aaatcactca aggtgcctta ttattcggct tcgctagcca
     3481 atttctcgtc gataaattgg cgcatgtatt caggtaattc tccgttgagg aacacgacat
     3541 cattgacctc atcgagtttc atcagtgagt aatatatctg catggcagtc attggtgtac
     3601 ttccacaacc tgtgcagccg ccttctagtg atatggtaac tatcccatct gtggtgtcaa
     3661 cgacatttac gattccatca tgggcatcga gcacagcctg aacagggcca accgaatcca
     3721 agatgagttg cttgtcgacc atcatttatc ggaagtcgtc cccctctatc aatcaacgcc
     3781 tctgtgagcc tagattttgg ccatccgtca ttttattgat ggcttgaaac aaggggggga
     3841 atggttttgc ttgagattcc aattaaatat gggtccaatc tcgctgtgag tcataggtga
     3901 atgaaatgga accagaacaa ctcgcacaga taggtattgc actcgccgtc ttcggcctac
     3961 tgactgcttt cttgctgtat cggcgtaacg attcaatcgt gattgacaac gaggtcgtcg
     4021 cagatatcac tggtcagatc cagcgtggag ccatggcctt cctcggagct gagtatcgct
     4081 atcttgcgat tttcgttagt atcgtcgccc tcctacttct tggtggagga gagatgaacg
     4141 atgctctcgg ttgggaaaca gcagctgcct tcctctttgg agctctagcc tctgtccttg
     4201 ccggttactc tggtatgagg agtgcaactt cagctaacgg gcgcacagca atggctgcca
     4261 agaatggtgg ccaagctgag gctcttgagg tatcctacaa tggtggagct gtgatgggtc
     4321 ttgccgtggg tggtcttggt cttctcggcg tctctgcaat gtacctctgg ctcggcccct
     4381 atggttccga tccgtccttc gatgcaattc catacattgc tggtttcggc atgggtgcat
     4441 ctagcattgc tcttttcgct cgtgtaggtg gtgggatcta tactaaggct gctgatgtag
     4501 gcgctgatct cgtcggtaag gttgaggcag gaattcctga ggatgaccct cggaaccctg
     4561 gtgtaattgc tgacaacgtt ggcgataacg tcggcgatgt tgcagggatg ggtgctgaca
     4621 tcttcgagtc ctttgtcggg tctatcattg ccgcaatggt catcgcagcc gctgctgggg
     4681 ctactgctaa gtctgctgct gtagctgctg taggttcagg ggatctcgca aatgccgttc
     4741 tccaaggcgc caccgctgag tatcagggtg ctttggttct ccttcctatc gctctcgcgg
     4801 tagtcggata cttcgccagt atcattgctg tattctctat gcgtgtgctc aagaatatgg
     4861 gcgatgctgc tgctgctctt cgctacacga cattcatcgg tgcaggactt ttctgggttg
     4921 gtggatatct catcatgggt ccatccggaa tggatatgga agcttatgct gctgcagcag
     4981 gaattgagaa cgcctttggt ccactatacg cagttattgc tggatcggta gtagggattc
     5041 tcatcggtct tgcaacagag tactatactg gaatagagcc agtcatgggt ctcaatgtcc
     5101 gtgatattcc atacattggc gagatgtcaa aaacaggtcc tgcgactaac gctattgccg
     5161 gtttgtctgt aggtatgaaa tcggtctttg ttccgattat cttcatggct attggtatct
     5221 atatcgcgaa tgactttgca gggctctatg gtattgccat ggctgcgatg ggtatgcttg
     5281 caactgttgg tgtcacgatg accgttgatg cttatggccc ggttgcagac aatgccggtg
     5341 gtattgctga gatgggcgaa ctaggttctg aggttcgaga aattaccgac gctctggaca
     5401 gcattggaaa cacaactgcc gctgtgggca aaggcttcgc aattggtagt gcggctttga
     5461 ccgctctcgc actctttgca gcattccggg cagcagtcga gacattggat ccgacgttta
     5521 caatggaact cactgacccc atggtcgtga ttggtctcct aatcggtggt gcactgccct
     5581 ttgttgtcgc tgctatgaca atgactagtg taggtaaggc agctggtgag atggttactg
     5641 agatccgtcg tcagttcaag gaaattgacg gtctgctcga gggcaagcca ggagttaagc
     5701 cagacagcgc tcgttgtgtt gatatttcta ccaaggctgc tctaagagaa atggttgcac
     5761 caggtgttgt ggcaattgct tctcctgtta tcgtgggcct tattcttggt ccagagacac
     5821 ttggtggact tcttgctggt gcaaccgtga caggtgttct aatggcactc ttcatggcaa
     5881 acgcaggtgg tgcttgggac aacgcaaaga aggcaatcga gcagggccat attgatggtg
     5941 cagaaaaggg cgatgccgct cactctgcag ctgtaattgg tgacacaatt ggagacccgt
     6001 tcaaggatac ctctggtcca tctctgaata tcctgatcaa gttgatgagt attgtaagcc
     6061 tagtcattgt tccattaatt gctctttgaa ttgatgaaca tacttgcagt tgtattgcta
     6121 gcggtcttgg tgaaggctga aaaatagcat cgctgtgggc tgtagcatgc gtgcttactt
     6181 gttgtcgcta ttgatggtga cagtcagcct tgcgggctgt gtcagtaatg aggcaattac
     6241 agaatccgat attggcaata ctaccaatga cgaattatct ctgcccgact ggcaaatcgg
     6301 agatcagtgg ctatacactt tcatcactcc cgagtttgga gaagacagta ctcgcttagt
     6361 agtcgcagat attcgagagg atgatggctt attcatgcta ggtatctcgt cagaaggcga
     6421 ggctcaaaga catgcagtaa tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaagacatg cagtaatcaa tcacaaccca
     6781 ttcttaggca gagttacaat ggacggtttg tcagtttatg agaatgggga gcctcagtca
     6841 gttttcaatt tcccttggga agttggcaat acgtgggatt ttaggctctt aggccaagat
     6901 tggagtgcaa ataccgacaa tatctacaac ggagaagtca cagtttctgc aatatctgga
     6961 gaaggtcaca ctttgagtta tgtattcagt ggcagagagg gcttcatcaa gagcctactt
     7021 tggactgata atgagggcgt agatcacttg caaatgaatc tcaatgaaaa gaaaactggc
     7081 tattctggag atgttttctt ttaccgtgct ggagatatac acgataattt gtatgaggaa
     7141 aatgatcaag aaatttacga tacgtttctc gatgaaggtt attctccaaa cgaggcatgg
     7201 gatactttag tttggtattt agatgttgaa ataagtcagc aaggtggctc cggttcactt
     7261 agtatcaaag accaccaagg tgcttccccc ttgactcgag catggggtgc aggagcaaca
     7321 gaaaagggtt catttggcac tatcccatct aattccggcg accactcaat cactgtcact
     7381 ctaagaggtc aagattctct tgttcacctc aaagtcgccg gtgctcttgt tcgttcttgg
     7441 acattgtgag gttgcaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnttc ttggacattg tgaggttgca atatgcctac tctcgtgatg
     7801 atgcatggcc taactggaac agctgaaatg attcgccctc tcgctgaatc tatactttct
     7861 cctggtatgc gtttgattct acctcaggca tccatacctc atccaaaccg aggttttgct
     7921 tg
//
LOCUS       DUKB01000033            8800 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_198040, whole genome shotgun sequence.
ACCESSION   DUKB01000033 DUKB01000000
VERSION     DUKB01000033.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8800)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8800)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8800
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_198040"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(31..2967)
                     /locus_tag="HA345_01315"
     CDS             complement(31..2967)
                     /locus_tag="HA345_01315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84026.1"
                     /translation="MKTSVHAILIAFLLCLSTVPMTVSAQASSIQNEVAYGIEYDWSN
                     LDDDFDSMTGINLNEILSRTMLAATDAGLTLTVAQLSTGSSNIYVESAEDRTATTIEI
                     DGESHSVWTRATDVTIRHAVLFDSALVTEWIDSSGSDPTGFDGYLSVDSENAVAVDVN
                     MLEYLDDDYNLYGIDMDFSLASEVSIEYQMDAGLEGAGEEFDFALTFGTGFDLNVPEA
                     TAEWRLGEKAPFFPVVSTYEDVEIECADDAALTTSGSEADLKIDCGTMEGDYSVSTGF
                     TFDLSDIPTENFGMDAGLLDISISDEISSTGSWDTDMEDFLEADDEDDDDDDDDDDSD
                     DDDSENDGYGGDADASIIIAEGGSPVDVVSCNCGTANPLMFLMLAAMLTNIGEAFAED
                     AAEELGDTFEEEFSEAVEEIGEALGGSEEDDDDDDDYSEWFTCANGMEVDEWREDDSN
                     NDCGDWSDETEYDTFYPCDDIETSMEGVQLYEVNNGMDDCSDLSDENVLWLQHVGMDI
                     QTMYECADGSRELTEWSIGNGYDECDDGSDEWPLADETLASTEKMNVGSNGYADRDPD
                     DTGSEAYCYIAGMTVTDPDDGETIFDGNLLMSTGYVTGHAGEDIGPYDGTREFSSSGH
                     ISQYNLPAGLTGCDELTQTQIDSMDEFSPEYVATSNVVTHDGSLKRMLSHGQAYQDDG
                     EVKFDAWFDGVHMDDEEYTLEVAIWSDDDEMIGTESVDLESDDWHASGGINDDEMGPG
                     DYCVEFTLVDSSGATVDTYDSDDDDGLCMTVEEVPEWLMELGAILEAFGESDFEDTLE
                     DFGSNLEDRLGDITEDIAYTDAQFMMWWSPSHHTVVGASLVVADNMDTWYTLVGPQIS
                     EVYSDEVSVNTGAPPVSIGLNYLIGDAASSAATDMADAQTVEEIADTAAHAEDMGEFA
                     QVLEDAGVDPASIGIDPVEPTEPTTAEEMIDEGIFGLPSISGLATIAVLALAGIVVAQ
                     LNRDEE"
     gene            complement(3068..4063)
                     /locus_tag="HA345_01320"
     CDS             complement(3068..4063)
                     /locus_tag="HA345_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-demethylwyosine synthase TYW1"
                     /protein_id="HIH84027.1"
                     /translation="MEPTIRAKLAKQSYHLVGEHGGVKVCHWTKESLKNDRACYKGTF
                     YGIESSGCMQMAPNVDTCNLACTYCWREPHSETLNKVDSDPEMLFYESVRAHRRLLTG
                     FKGHPSVPLEKWQEAQDPKHVAISLNGEPTLYSRLGEFLDICHQHGVSTFLVTNGSLP
                     KVIEKLDTLPTQLYVSVDAPNQEIFNRICKPKFDSHAWDKLEQTLELLPSLDTRTVCR
                     HTLIKGESLGHHEDYARLDNIADPMFIEAKGYVYVGNSRNNLSIENMPSHDDVMSFSN
                     SLAPLVGREVLSDRRESRVALIGKEMIPVTLPEKTRDLPANLGIAKPQNFKLPSL"
     gene            4214..4741
                     /gene="msrA"
                     /locus_tag="HA345_01325"
     CDS             4214..4741
                     /gene="msrA"
                     /locus_tag="HA345_01325"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012812910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HIH84028.1"
                     /translation="MARLVVGGGCFWCIEAAFKGLRGVVSLAPGYAGGHVENPTYEQV
                     CGKRTGHAEIVDIEYDASIIDYATLLRVFFTAHDPTQLNRQGNDVGPQYRSIVFVDGV
                     DEQTTLDSVLEEVASWFGDTIVTEVAELANHPVYPAEVYHFDYFANNPQNPYCSFVVA
                     PKVAKVRKKHASLYE"
     gene            4790..5119
                     /locus_tag="HA345_01330"
     CDS             4790..5119
                     /locus_tag="HA345_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84029.1"
                     /translation="MNEKSTRPAVSAEDLHFPNDRGMMDPPGHNPGPPILTDVLVDGV
                     PAKAGIGVFGTWSERIVLIFENEHPKYGKEWGTKYYMFDENEPGKVNWGHNGDSFRIE
                     IIETNQS"
     gene            5336..6343
                     /locus_tag="HA345_01335"
     CDS             5336..6343
                     /locus_tag="HA345_01335"
                     /inference="COORDINATES: protein motif:HMM:NF012699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkane 1-monooxygenase"
                     /protein_id="HIH84030.1"
                     /translation="MAELRPEAWSWHLLGLLNPLIVIGGNIVGGYWVAAGAIFMLGLG
                     PLLDLMMGKAEKPRPPRDSGTPFEALLYVHALMQFITLGSLFYFASQNGINWLLLVAG
                     ISTGINSGASGIIVAHELGHTKPRSFSWWVGRANLLSVLYLHFTTEHNFTHHKHVSTV
                     NDPASAKQGESVYWFFLRTVPGQFLDAMGVHTRKGRTGLRNPVIRGFFVQVLFVAGIY
                     AGLGSAMTVAFLIQAGFAIFLLEYINYIRHYGLNREIGERQTEMHSWQSEERWSRWTL
                     LELTRHPAHHLKASEPFWRLQPYDDAPSLPTGYYGCFWLALIPPLWRRLVDPRIPSST
                     A"
     gene            6377..6775
                     /locus_tag="HA345_01340"
     CDS             6377..6775
                     /locus_tag="HA345_01340"
                     /inference="COORDINATES: protein motif:HMM:NF014608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HIH84031.1"
                     /translation="MVRIDATYDGDLRCTATHAPSGAKLITDAPVDNHGRGASFSPTD
                     LLATSMLTCIMTIIGIRANARDIEVNGMSGSVEKSMGSNPRRVAQLDVKIRLPDVLSD
                     ADRDWLKTEGCACPVCRSVSEMMEVDVSFE"
     gene            6826..7617
                     /locus_tag="HA345_01345"
     CDS             6826..7617
                     /locus_tag="HA345_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84032.1"
                     /translation="MEWSLGPFSFSVPPADAWAFYLYIVIVGFIIRYILVMRPTIELI
                     RRYNPEIRSIIRALLSIKNAFGLKGIESFLAREIGTLLLPGLAALTIRIVLGNPTDVD
                     WTDMRMYLMVGFAGLWIVAEIYRSMSTRKKVKQLIEMNLPPSVVKNGLGALRWTRSAI
                     GVVATMDITDEPEENAVDVVKNHAKSLFKNPLKLNPFHTAKAAVKTVGAAARDIASLA
                     VDKVDAQAQKIVDQQIKFDAQAFVVDMVMSIFPLVVIYALVPLLS"
     gene            complement(7590..>8800)
                     /locus_tag="HA345_01350"
     CDS             complement(7590..>8800)
                     /locus_tag="HA345_01350"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HIH84033.1"
                     /translation="NVLSMVGTWFTTIALFILAADISGLPELAVGIVLVLRMFSLALP
                     QPFTGMLADRFSRKWLMAISHVLSAACALLLLFVDGPDDAVLYYSMVIMLMVLHAVYV
                     PAESAAIPNLVGEGEALITANAMNSATWSASLAIGAALGGFVVAAYGTDVAFVIDAAT
                     FLVSALMIATLTIPQEKVENPGTIIGGGVRLILDGFRRIRRTPPVYRILSAKALWSIG
                     GGGLVYCLVMIGDEIGVADVAAGIGVLFAARGIGSGLGPIVARAVLRERSRWPFYLGG
                     LVSLCGLFYVLVALIPWTPWITVLVLLAHAASGANWVLSTVMLQERTEDDWRGRVFAT
                     DFLLMTTVNGTSSLIAALMIAYVGIDLRTLVLIFAVGQTISGIIWLSVMLPGERRYFV
                     ENQDKSGTSA"
BASE COUNT         2154 a         2150 c         2133 g         2363 t
ORIGIN      
        1 cgccgtcact catgtgtgtg tcgggctcct tcattcttca tctcggttaa gctgtgcgac
       61 aacgatgccg gcaagcgcaa ggaccgctat ggtagcaagc ccggaaatcg aagggagtcc
      121 gaagattcct tcatcgatca tttcctcagc cgtagttggc tcagtaggtt ctacaggatc
      181 aataccgatt gaggctgggt cgacacctgc gtcttcgaga acttgagcga actcgcccat
      241 atcctcagcg tgtgcagcag tgtctgcgat ttcctcaaca gtttgtgcgt ctgccatatc
      301 ggtagctgca gaagatgcag catcaccaat gaggtaattc aaaccaatac ttactggtgg
      361 ggcacctgta ttgactgata cctcatcgct gtaaacttcc gatatttgag gtccgacaag
      421 tgtgtaccat gtatccatgt tatcggcgac aactaggcta gcaccaacta cggtgtgatg
      481 tgatggactc caccacatca tgaactgagc atccgtgtaa gcgatgtctt ctgtgatgtc
      541 tccaagacgg tcctcaaggt tgcttccgaa gtcctctagg gtatcctcaa agtcagattc
      601 accgaaggct tcgagaattg ctcctagttc catgagccac tctgggactt cttctacagt
      661 catgcaaagg ccgtcatcat catctgaatc ataggtatca acagtagctc cactggaatc
      721 aaccagtgtg aactcaacac agtagtcgcc aggccccatt tcatcgtcat ttattccgcc
      781 actggcatgc cagtcatcgc tttctagatc cacgctctca gtacctatca tttcatcatc
      841 atcagaccaa attgccactt cgagagtgta ttcctcatca tccatgtgaa ctccatcgaa
      901 ccacgcatcg aacttcactt caccatcgtc ctgatatgct tgcccatggc tcaacattcg
      961 cttcaatgaa ccatcgtgag ttactacatt gctcgtggca acatactcag gagagaattc
     1021 gtccatactg tctatctgtg tttgagttag ttcgtcgcat ccagtaaggc ctgcaggtag
     1081 gttatactga gatatatgac ctgaagatga gaattctcga gtgccatcat acgggccaat
     1141 atcttcgcct gcatgaccag ttacataacc cgtgctcatt agcaagttac catcaaagat
     1201 ggtttctccg tcatcgggat ctgtcactgt catcccagcg atgtaacaat atgcttcaga
     1261 accagtgtca tctgggtctc gatcagcata tccgttcgat ccaacattca ttttttccgt
     1321 ggaagcaaga gtttcgtctg caagtggcca ttcatcagat ccatcatcac attcatcgta
     1381 tccgttgccg atggaccatt cagtaagttc gcgacttcca tcagcacatt cgtacattgt
     1441 ttggatatcc atgccaacgt gttgcaacca taggacgttt tcgtcagata ggtcactaca
     1501 gtcatccatt ccattgttaa cttcgtagag ttgaactcct tccattgagg tctcgatatc
     1561 gtcgcaaggg tagaatgtgt catactcagt ctcatctgac cagtcgccac agtcattgtt
     1621 gctatcgtct tcgcgccatt catcaacttc cattccgttc gcgcaagtga accattccga
     1681 ataatcgtcg tcatcgtcat cgtcttcctc gctgccaccg agtgcctctc cgatttcttc
     1741 aactgcctca gagaactctt cctcgaatgt atcgcctagt tcttcagcag catcctcagc
     1801 gaatgcttca ccgatgttgg taagcattgc agcaagcatc aggaacatca gtgggtttgc
     1861 agttccgcaa ttacaagaga caacatccac aggagaacct ccctctgcga tgatgatact
     1921 tgcatcagcg tcgccgccat atccgtcgtt ttcactgtcg tcatcatcac tgtcgtcgtc
     1981 atcatcgtca tcatcgtcgt cttcgtcatc agcttccaag aaatcctcca tgtccgtgtc
     2041 ccaagaaccg gtactgctga tttcatctga aatcgagata tctagtaggc cggcgtccat
     2101 accgaagttt tcggttggga tgtcagaaag atcgaaggtg aatcctgtag aaacagagta
     2161 gtctccctcc atggtgccgc aatctatttt cagatcagcc tcagagccac tggtggttaa
     2221 tgctgcatca tctgcgcact caatctcgac atcttcgtag gtcgatacga ctgggaagaa
     2281 gggggccttc tcaccaaggc gccattctgc ggttgcctcg ggaacgttaa ggtcgaatcc
     2341 tgtgccgaaa gtcagagcga aatcaaattc ttcaccagca ccttccaggc ctgcatccat
     2401 ttggtactcg attgatactt cagatgcgag ggagaagtcc atgtcaatac cgtagaggtt
     2461 gtagtcatca tcgagatact cgagcatgtt tacatcaact gcaactgcgt tttcagaatc
     2521 aacactgagg tatccatcga atccagttgg atcagagcca gaggaatcga tccattctgt
     2581 tacgagagcg gagtcgaaga ggactgcgtg acgaatggtg acatctgttg ctcgtgtcca
     2641 aaccgaatgg gattcaccat caatctcgat ggttgtcgct gtgcggtctt ctgccgactc
     2701 aacgtagatg ttactcgacc cggttgagag ttgagcaaca gtcagggtga ggcccgcatc
     2761 agttgccgcc aacatggtgc gggagagaat ttcgttcagg ttgattccgg tcatggaatc
     2821 gaagtcatca tccagattcg accaatcgta ttcgatacca taggcaactt cgttctggat
     2881 tgaagatgct tgtgcactca ctgtcattgg tactgtggat aagcacaaca aaaaggcaat
     2941 caaaatagcg tgaacactgg ttttcatggg caatggggag tcagcaatgc aaataacggt
     3001 attgattgca aaggtcgatg ctttagggct aatcacaacc tttcactaat ggtaatgaag
     3061 agtaatttca gagggaaggg agtttgaaat tctggggttt tgcaatccca agattagcgg
     3121 gtaaatctct tgttttctct ggaagtgtaa ccggtatcat ttcctttccg attaacgcta
     3181 ccctgctctc tcttcggtct gacagtacct ctcttccaac taaaggtgcg agggagtttg
     3241 agaaagacat gacatcatca tggctcggca tgttctcgat tgataggttg ttgcgactgt
     3301 tgccgacgta gacgtatccc tttgcttcga tgaacatcgg atccgcgatg ttatcgaggc
     3361 gtgcgtagtc ttcgtgatgc ccgagtgatt ctcctttgat tagtgtgtga cgacatacag
     3421 tgcgtgtatc aagtgaaggt agcaactcaa gcgtttgttc taacttgtcc catgcatggc
     3481 tgtcgaattt cggcttacaa attcggttaa agatctcctg attaggggca tccacgctaa
     3541 catagagttg tgttggtaat gtgtcgagtt tctcaatgac ctttggaagg cttccgttgg
     3601 ttacgagaaa ggtcgaaact ccatgttggt gacatatatc caggaattca cctagcctgg
     3661 aatacagtgt tggctcacca ttcaaactga ttgcaacatg cttcgggtct tgggcttcct
     3721 gccatttctc tagagggacg cttggatggc ctttgaaacc agtcaagaga cgacgatgtg
     3781 ctcgtacgga ctcatagaac aacatctctg ggtccgaatc aaccttgttg agtgtctctg
     3841 aatgtggctc acgccagcaa taggtacagg cgaggttaca ggtgtcgaca ttgggcgcca
     3901 tttgcatgca accgctgctc tcgataccgt agaaggtacc tttgtagcat gcgcgatcat
     3961 tcttcaggct ctctttcgtc cagtgacata ctttgactcc accatgttct ccgacgagat
     4021 ggtaggattg cttcgcgagc tttgccctga tagttggctc aatctttgtc accggactct
     4081 gcataggtat gcctcccaga ccacgagtcc cgcagtgggg ccgggtcggg cgaatcatcg
     4141 tctgcgctta ccgtcttcaa cgcatcgtcg attaaacatg tagattcaaa cagtcgaaca
     4201 ctatcctccg tgtatggctc gtctcgttgt tggtggaggt tgcttctggt gtatagaggc
     4261 tgcattcaag gggctccgtg gagttgtatc attggctcct ggatacgctg gtggccatgt
     4321 cgagaatcct acctatgaac aggtgtgcgg taagcgtact ggccacgccg aaatcgtgga
     4381 tatcgaatac gatgcttcca tcatagatta tgcaactctt cttcgcgttt ttttcactgc
     4441 tcatgatcca actcaattga accgacaggg gaatgatgtc ggccctcaat accgaagcat
     4501 cgtctttgtt gatggagtag atgagcagac tactttagac tcggtcttag aggaggtcgc
     4561 aagttggttt ggggatacaa tcgtcaccga ggttgccgaa ctcgcaaatc atcctgtata
     4621 tccagccgaa gtttaccact tcgattactt cgcgaataat cctcagaatc catactgttc
     4681 gtttgttgtt gctccgaagg tggcgaaggt taggaagaag catgcttcat tgtatgagta
     4741 atcaattctc attgctcagg ttcataggta accattctga tgcctaggta tgaatgagaa
     4801 gagtacacgt cccgcagtgt ctgctgagga tttacatttt ccaaatgata gaggaatgat
     4861 ggatccacca gggcataacc ccggtccccc gattttgact gatgtcctgg tcgatggagt
     4921 tcccgctaag gccgggattg gagttttcgg aacatggagt gaacgaatcg ttctaatctt
     4981 tgagaacgag catccgaagt acggaaagga atgggggaca aagtactaca tgttcgacga
     5041 gaacgaacct ggaaaagtga attggggaca taatggcgat tcttttcgaa tcgagattat
     5101 cgagacgaat cagtcgtaga tcggaacgcc ttcacaacac gcttctacaa cgcgatgaca
     5161 ttttggacat tccatgtgtt gctttcttcg tactgctgca cctcgatagc cacatccaca
     5221 cataaggtca gcacaatggt cagtgtccat gacttgggag tttatcgtta gggatttagc
     5281 aattggcaga cattatgggg atgaaattga aatcagtgag gtctgaagcg gtagcatggc
     5341 tgaactccgg cccgaggcat ggtcatggca tcttctcggg cttctcaatc cattgattgt
     5401 aatcggtgga aatattgtgg gaggatattg ggtagcagct ggtgcaattt tcatgcttgg
     5461 cttgggccct ctacttgatc ttatgatggg taaggcagag aagcctcgcc cgccccgtga
     5521 ttccggtact ccctttgagg cgctactcta cgtgcatgct ctcatgcaat tcatcacact
     5581 aggttcactc ttttacttcg cgagtcagaa tggaatcaat tggcttctcc tagttgcagg
     5641 cattagtact ggtatcaatt caggtgcttc cggaatcatc gttgcgcatg aacttggcca
     5701 tacaaagcca cgatcgttct cctggtgggt gggtcgagca aatctgcttt cagtacttta
     5761 cctacatttt accaccgagc acaatttcac tcatcacaag cacgtatcga cagtgaacga
     5821 tcctgcgagt gcaaagcagg gtgaatcggt gtactggttc ttcttgagga ccgttcccgg
     5881 acagtttctg gatgcaatgg gtgtgcatac tcgtaagggg agaacgggat tacgtaaccc
     5941 agttattcgt ggcttttttg tccaagtatt gttcgtcgct gggatttacg cgggacttgg
     6001 ttcggcaatg acagtagcct tcctcatcca agcaggcttc gcaatattct tgctggaata
     6061 catcaactac atacgacatt acggacttaa tcgtgagatt ggagaacgac agacagagat
     6121 gcattcgtgg caatcagagg aacgttggtc gcgttggaca cttctagaac taacccgcca
     6181 tcctgcacat catctcaagg ctagcgaacc gttctggaga ttgcaaccat acgatgatgc
     6241 tccatcacta cccactggct actatggctg tttttggcta gctctaattc cgccgctatg
     6301 gcgtcgtctt gtcgatccga gaattccctc gtccaccgcc tgagtattca tcgagtagta
     6361 tgcgccgttg atactcatgg tccgcatcga cgccacctac gacggagatc tccgctgcac
     6421 tgcaacacat gctccatctg gagccaagtt gatcacagat gctccggtag acaatcacgg
     6481 aagaggtgcc tcattctctc cgacggattt actcgcaacc tcgatgctca cttgcatcat
     6541 gaccataatc ggaattcgtg cgaatgcgcg tgatatcgag gtcaatggaa tgagtggtag
     6601 tgtggagaaa tccatgggct ctaatccgcg acgagtggct caactcgacg tcaaaatcag
     6661 attacccgat gttttgtcag atgcggatag ggactggctc aagactgagg gttgtgcttg
     6721 tccagtatgt cgttccgtta gtgagatgat ggaagtggat gtaagtttcg agtaactctc
     6781 aattcagggt gaaccttcat gctgggcctt ctaccatgag cattcatgga gtggtcccta
     6841 ggtcccttct ctttcagcgt ccctccagcg gacgcgtggg cattttatct ctacatcgta
     6901 atagttggtt tcatcattcg ttacatcctt gtaatgcgac cgacgattga attgattcgt
     6961 cgttacaatc cggagatacg tagcattatt cgtgctcttc tctctatcaa gaatgcattt
     7021 ggactcaagg gtatcgagtc ttttctggct cgtgagatag ggactcttct acttcctggt
     7081 ctagcagcgt tgacaatccg gattgtactt gggaatccga ctgacgtaga ttggactgat
     7141 atgaggatgt acctaatggt aggtttcgcc ggattgtgga tagttgcaga aatttatcga
     7201 agcatgagca cacgaaagaa agtcaagcaa ctaatcgaaa tgaatctccc accatctgtc
     7261 gtcaagaatg gattaggagc attacggtgg acacgttctg ctattggtgt ggttgctacg
     7321 atggatatca ctgatgaacc ggaggagaac gctgtagatg tcgtcaagaa tcatgcgaaa
     7381 tcgttgttca agaatccgtt gaaactcaat ccattccaca cagccaaggc tgcagtgaag
     7441 acggtaggtg ctgctgcgcg tgacattgca agtctagcag ttgacaaggt ggatgctcaa
     7501 gctcagaaaa ttgtagatca gcaaatcaag ttcgatgcac aggcatttgt tgtggatatg
     7561 gtgatgtcca ttttcccact ggtcgtaatt tatgcgctcg ttccgctttt gtcttgattt
     7621 tcaacaaagt agcgtcgctc acccggtaac ataaccgaga gccatattat tcctgaaatt
     7681 gtctgaccga cagcgaagat tagtactaac gttctcaggt cgattcctac gtatgcaatc
     7741 atcaaggcag caatcaacga tgaggttcca ttgactgtgg tcattagaag aaagtcagtt
     7801 gcaaacaccc tgcctctcca atcgtcttcc gttctttcct ggagcataac tgttgacagt
     7861 acccaattgg caccgcttgc ggcgtgtgcg agtagcacga ggacggtaat ccaaggtgtc
     7921 catgggatta gtgcgactag aacatagaag agtccacaga gggacacgag ccctccgagg
     7981 tagaatggcc acctacttcg ttcgcgtaga acggcacgag caacaattgg accaagtcct
     8041 gagcctatgc ctcgtgctgc aaaaagcacg ccaataccag cggcgacatc tgccacacca
     8101 atttcgtcac caatcattac gaggcagtat actagccctc cacctcctat tgaccacagc
     8161 gcttttgcgc ttaggattcg gtatacaggg ggcgtgcggc ggattcttcg aaatccatcg
     8221 agaataaggc gtactccacc tccgataatt gtgccaggat tctcgacttt ctcttgaggt
     8281 attgtaagcg tcgcaatcat caatgcagat actaggaagg ttgcagcgtc aatcacgaat
     8341 gctacatccg taccgtatgc tgcgactacg aagccaccta gggctgcacc aatagcgagg
     8401 gacgcagacc atgtggcgga gttcatcgcg tttgctgtga tgagcgcctc cccttcgcct
     8461 acgaggttag gaattgcagc agattccgct gggacgtaaa cagcgtgcag taccatgagc
     8521 atgatcacca tgctgtagta caataccgca tcatcgggcc cgtctacaaa cagtaggagt
     8581 agtgcacatg ctgctgataa gacatgggag attgccatta gccacttacg gctgaaacga
     8641 tcggcgagca tccctgtgaa tggttgaggt aaggcaagag agaacatccg cagtacgagc
     8701 acaatcccga cggctagttc agggagccca gagatatcgg cagcaagtat gaacaatgca
     8761 atcgttgtga accatgttcc aaccattgac agcacgttgg
//
LOCUS       DUKB01000034            7364 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_200544, whole genome shotgun sequence.
ACCESSION   DUKB01000034 DUKB01000000
VERSION     DUKB01000034.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7364)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7364)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7364
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_200544"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="HA345_01355"
     CDS             complement(<1..305)
                     /locus_tag="HA345_01355"
                     /inference="COORDINATES: protein motif:HMM:NF024927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase B"
                     /protein_id="HIH84034.1"
                     /translation="MCGIAGQLGPDAPDIAEKMVACLNHRGPDGSGSWNEMFGPNAYV
                     SLGHSRLAIVDIIGSQQPIGSDHGCVLIQNGEIYNHQRIRSESSYPFRTNGDSESILS
                     "
     gene            complement(347..496)
                     /locus_tag="HA345_01360"
     CDS             complement(347..496)
                     /locus_tag="HA345_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84035.1"
                     /translation="MATKDRSVIADDSNSGPTKVWSDGVSQNTYLFVYILAMVLSSWI
                     FIRYW"
     gene            complement(546..1196)
                     /locus_tag="HA345_01365"
     CDS             complement(546..1196)
                     /locus_tag="HA345_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84036.1"
                     /translation="MSEMVPVEDTEENLNDHVPHSVGGLWGHLFRRFIHLGMVIIPLI
                     YYWEGDSVSSVTGLEPKQIVSIFAFAIIISEIIRLRIGIVVFGQREYEGSQLSAFFWG
                     GTSVCLTLIIAPEEGMNGAAYGVPLILSLTLIDPLLGELRRANVSLGKVVIYGYLSTL
                     AIWIYCGYWIDTPYIIAPFVSALVVASEWPRLTWIDDNATMLLIPLGFVMLLSPFL"
     gene            complement(1226..2143)
                     /locus_tag="HA345_01370"
     CDS             complement(1226..2143)
                     /locus_tag="HA345_01370"
                     /inference="COORDINATES: protein motif:HMM:NF015279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HIH84037.1"
                     /translation="MERAVIGVTVDHLDAISLLAEAKDGSRRSLARLLSLIQSGDSLA
                     IDAVRNPPTSRSLGITGPPGAGKSVLTDRLASALSDRGCRVAVLCVDPSSPVSGGSLL
                     GDRMRMEESGADERIYVRSVATRDAVGSLPFRLSAMADALAHAGHDSILIETAGVGQT
                     ELGIVSITDHVLLVEGPERGDIIQAEKAGILEMADIVVVNKADLPGAEQAASDLRSGL
                     EFGRGSTVPILLVSALNRTGVVELVETIENLSPSLTISSMRWRLRLLESLQQTLLSDN
                     RFEDLVRQLADGEVSLEQAINELLQPEDA"
     gene            complement(2112..2558)
                     /locus_tag="HA345_01375"
     CDS             complement(2112..2558)
                     /locus_tag="HA345_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012869042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HIH84038.1"
                     /translation="MTRLRIVVAKPGLDGHDRGAKVVARALRDAGHEVIYTGLRRTPE
                     EIVRIAEDEDASIVGLSSLSGAHAFLFPRVCKLLNEAGLGDVVVFGGGIIPQADRPTL
                     YESGIRGIFGPGTPTEEILSFLDEVVERRAKASPCGVGEGGDWRHS"
     gene            2656..4206
                     /locus_tag="HA345_01380"
     CDS             2656..4206
                     /locus_tag="HA345_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011957995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HIH84039.1"
                     /translation="METTEERLQDLRKRKTQAQMGGGQTRIDAQHNKGKMTARERVEA
                     FLDEGTFQEIDALVEHRCNDFGMDKNVIPGDGVVCGYGTVEGRTVYCYAQDFTVYGGS
                     LGEMHGLKICKLLDMALKTGAPVVGMNDSGGARIQEGVASLGSYAEIFFRNVRASGII
                     PQISIIMGPCAGGAVYSPAITDFVVMVDQTAHMFITGPEVIKTVTNEEVSFEELGGAN
                     THASRSGVTHFTAQSDEEALDLVRDLLGHLPSNNLERTPSRSTGKPSVDEKTLQDLVP
                     SDPLKPYDVMTAIEGIVDYGAFLEVQADFAQNIVCGFARMGGHSVGIVANQPKILAGC
                     LDIDASVKAARFVRFCDAFNIPLVTLVDVPGFLPGASQEWGGIIRHGAKLLYAYAEAT
                     VPKLTVILRKAYGGAYDVMSSKHIRGDYNIAWPTAQLAVMGADGAVQIIHRRRIKNAA
                     NPEQERARLVEDYTESFATPYKAASLGYIDDVIDPSETRDRLIRALGHLMDKEETRPA
                     RKHGNIPL"
     gene            4216..4473
                     /locus_tag="HA345_01385"
     CDS             4216..4473
                     /locus_tag="HA345_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84040.1"
                     /translation="MDSEPTFTERIGRILRESRDAELVNDDTKMRLAVAIAIRLHTQN
                     VSDDRANAGRMPGPAYARDHRNNRFGRPSLLNNRSSRSTWR"
     gene            4479..4898
                     /locus_tag="HA345_01390"
     CDS             4479..4898
                     /locus_tag="HA345_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HIH84041.1"
                     /translation="MVTYEIDIDGEIFSVDIEDGEDGVLNASVGGVTYQVTLPEGAEV
                     AAPRRRNTGGKSRGKSGTVSTSIPGKIVTLEVSPGDAVTEGQVILILEAMKMQNEVTA
                     PVTGTVSAVNCAEGDNVEANMALVVIEPEAPEETVSE"
     gene            5233..>7364
                     /locus_tag="HA345_01395"
     CDS             5233..>7364
                     /locus_tag="HA345_01395"
                     /inference="COORDINATES: protein motif:HMM:NF018449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84042.1"
                     /translation="MRFKSVILSMLMLLSMVTTISQIDNSQGESIEDLPSDQIPDSTS
                     SRAASDWEWSTAFGSTEGDDGWGIVVDQDYTSYVTGQFRGTVNFGSCSTCTQTSQGDS
                     DIFIAKLDPQGDFLWVNTAGGSTQDAPIGHITQLANGNLAIAGYVGAGAAQFDSIQLN
                     PTGVRGMLIAAFDQTGNWIWATEYSGAHSVSDVRAYDITSDDSHIYVTGDFVRSMVVN
                     GVTHNAFTTGVSAGAKDLFVMKSDYSGNHVWSQFSIGGESHDGGRGIAVDSNQNVYIA
                     GMHSENAPFGNTTLATNPTHSTSVYNLYEALIAKLDSNGNWLWATSHYGPHLDIAKDI
                     VVTQDGLGVENIVATIYATNDLSISSTNNVISGPFNNLANHMVVTSKFNMDGEMMWYD
                     VVTGYDNIPAELTTAPSGDVFLCGYGTNLGSMTSHHSDPQYDDQWNTLLDDWAGDMWV
                     AKYEIDGQLDWIVTSGADPAQSTLRDCALNQDNVPYVAGGFDGDSIYSTPHPDSDGTL
                     NAGLSPGAAHVRDGVFGKLIDDYSTSNPDPCEQFNGMLGPVWDNSTVNNLVAGDIYEH
                     PEGSGVFWQVINSTNTNADPGTNADIWSDACTCYEIWSSTSNPIVWDVVGTYDLYDIV
                     EYPAGSYQLWHAVDNVPANEIPDDPNNWRFWQPCEGTECAQFNGTLGPVWDSSTSNFV
                     SPGDRYEFPANSGIFWIVNPIHTPGFTAA"
BASE COUNT         2063 a         1741 c         1815 g         1745 t
ORIGIN      
        1 gataggatag actcgctatc gccattggtt ctaaacggat aggagctctc tgaacggatc
       61 ctctgatgat tgtagatttc tccgttctga attagaacac atccatggtc gctaccgatc
      121 ggctgctgag acccaatgat gtcaacgatt gcgagtcgtg aatgaccaag agagacgtat
      181 gcgttaggcc cgaacatttc attccatgaa ccagaaccat ctggtccacg atgatttaga
      241 caagcgacca tcttctcagc aatatcggga gcatcgggac ctaactgacc cgctatgccg
      301 cacatgccta gaacctaggg acgattcgct ttgaatccgt tgtggattac cagtaccgga
      361 tgaaaatcca agatgacaaa accatcgcga gaatgtaaac gaagaggtag gtgttctgac
      421 taactccatc actccacacc ttagttgggc cagagttaga gtcgtctgca atgacagaac
      481 ggtcctttgt cgccataacc atccgacctg aatacggatt gtaaatctaa cccgaagaat
      541 ggctgtcaga ggaacggaga gagtaacatc acgaagccga ggggtatgag cagcatggtc
      601 gcattatcat caatccaagt cagacgtggc cactcggagg caacaacaag cgcagacaca
      661 aatggtgcaa tgatgtaagg agtatctatc cagtatccac aataaatcca gattgccaaa
      721 gtggacaggt atccatagat gactaccttc ccgagcgaca catttgcacg acggagttca
      781 ccgagcagag gatcaatgag tgtgagactg agaattagag ggacgccata tgctgcaccg
      841 ttcatgccct cctccggcgc gatgataagt gtgaggcaaa cagacgtccc cccccaaaag
      901 aaagccgaaa gttggctacc ttcgtattct cgttgaccaa aaaccactat accgatacgt
      961 agccttatga tttctgaaat gattatagca aaggcaaaga tactgactat ttgctttggt
     1021 tctaaaccag taactgatga tactgaatca ccttcccagt agtaaataag gggaataatg
     1081 accatcccga gatgtatgaa tcgtctgaat aaatgccccc atagcccccc cacagagtga
     1141 ggaacgtggt cattgaggtt ctcttcagta tcttcaaccg ggaccatctc tgacatctga
     1201 atcgactctt gtatcggagg tgtatctaag catcttccgg ctgaagtaac tcattgatag
     1261 cctgttcaag gcttacttca ccatcggcga gttgccggac taaatcctcg aatctattgt
     1321 cagaaagaag tgtttgctgc aacgattcaa gcaaacgtag tctccagcgc attgaagata
     1381 tagtgaggct aggagataaa ttctcaatcg tctcgaccaa ctcgacaaca ccggtacggt
     1441 tgagagcgct gactagaagg atgggcactg ttgatcctct gccaaattcg agaccacttc
     1501 gcaaatccga ggcagcctgt tctgcaccag gcaggtccgc cttgttcacc accacgatgt
     1561 cagccatctc aagaattccg gccttctcgg cttggatgat gtctccacgt tcgggccctt
     1621 ctacaagtaa aacatgatca gtaatcgaaa caatcccaag ttctgtttga ccaactcctg
     1681 cggtctcgat aagaatagag tcgtgaccag catgcgccaa tgcatcagcc atagcactca
     1741 aacgaaacgg caaggaacct actgcatccc tagtcgcaac actacgaaca tagattcgct
     1801 catccgcacc actctcttcc atgcgcatac ggtcaccaag taaggaccca ccagaaactg
     1861 gtgaagaggg atcgacacat aggactgcaa ctcggcaacc cctatcagaa agagcagatg
     1921 ctagacgatc tgttaggact gattttccag caccgggagg tccagtaatt ccaagagaac
     1981 gcgaagtagg aggatttcgt acagcgtcaa tggccaatga gtctcccgat tgaatcaaag
     2041 agagaagacg tgcaagagat ctgcgagacc catccttggc ctcagcaagc agagaaatag
     2101 catctaaatg atcaactgtg acgccaatca ccgccctctc caaccccaca gggtgaggct
     2161 tttgcgcgac gctccactac ctcgtcaagg aatgagagaa tctcctccgt tggagtccca
     2221 ggcccgaaaa tcccacgtat acctgactca tacaatgttg gacgatctgc ttgtgggatt
     2281 atacccccgc caaagacaac gacatcaccc aaaccggctt cattcagtag tttgcagacg
     2341 cgtggaaaca agaaggcatg tgctcccgaa agagaggaga ggccgacaat acttgcatct
     2401 tcatcctcgg caatccgtac aatctcttca ggagtcctcc gaagcccagt atagattacc
     2461 tcgtgacccg catctcggag tgcacgtgca acgaccttgg cgccacgatc atgtccatcg
     2521 agccccggtt ttgccaccac gatacgtagg cgggtcatgt agtgggactc atccgcctcg
     2581 tcttgaacca accgacggaa ttgaatggct ccacgaaggg catggattat ggacaggttg
     2641 cacgaacagg agggcatgga gacgacagaa gagcggctcc aagacctccg caagaggaaa
     2701 acgcaagcac agatgggtgg gggccagacg aggattgatg cccaacacaa caagggcaaa
     2761 atgactgctc gtgagcgagt agaagcgttt ctcgatgaag gaacatttca ggaaattgat
     2821 gcattagttg aacaccgatg caacgatttc ggcatggata agaatgtaat tccaggcgat
     2881 ggtgtagtct gtggatatgg taccgtcgaa gggcggaccg tttactgcta tgctcaggat
     2941 ttcactgtct atggcggtag ccttggagag atgcacggac tcaaaatctg caaacttctc
     3001 gatatggcgc taaaaaccgg cgcacctgtt gtcggaatga acgacagcgg aggagctcgg
     3061 attcaagagg gagttgcctc attgggatcc tatgctgaga tattcttccg aaatgtgcgg
     3121 gcgagtggca taatacctca aatctcgatt atcatgggcc catgtgctgg cggagcagta
     3181 tacagtcctg cgattaccga cttcgttgtg atggtggacc agactgctca catgttcatt
     3241 accggacctg aggtgattaa gaccgtcaca aatgaagaag taagtttcga ggagttaggt
     3301 ggagcaaaca ctcacgcctc cagatcagga gtaacgcatt tcacagcaca aagtgacgag
     3361 gaagcactcg acctagttcg agatttgctt ggacacctcc cttccaataa tctggagaga
     3421 acaccctcac gaagtactgg gaaaccctct gtagatgaga aaacgttgca agatcttgta
     3481 ccctcagacc cattgaaacc ctatgatgtg atgactgcta tcgaaggaat cgtagattat
     3541 ggagcgtttc tagaggttca ggccgatttt gctcagaaca ttgtctgcgg attcgcccga
     3601 atgggagggc actcggtagg tattgtggca aaccaaccaa agattctcgc aggatgtctc
     3661 gatatcgatg catccgtgaa agccgcaaga ttcgttcgat tctgtgatgc attcaacatc
     3721 cctctcgtaa cgctcgtcga tgtccccgga ttccttccag gagcaagcca ggaatgggga
     3781 ggaatcattc gccacggagc gaaactcctc tatgcctacg ccgaagcaac ggtacctaag
     3841 cttactgtga ttctcagaaa ggcctacggt ggcgcgtacg atgtgatgtc atcgaagcat
     3901 atccggggcg actacaatat cgcttggcct actgcacaac tcgcagtaat gggtgcagac
     3961 ggagcagtac aaatcatcca tcgccgccga atcaaaaatg ctgcgaaccc tgaacaggaa
     4021 cgggctcgcc tcgttgagga ctacactgaa tctttcgcaa caccatacaa agccgcttcc
     4081 ttaggctaca tcgatgatgt aatcgacccc tctgaaacac gtgaccggtt aattcgagca
     4141 ctcggacacc tgatggataa agaggaaact cggccagcga ggaagcatgg aaacatcccc
     4201 ctgtgaggta tctaaatgga ctctgagcca acattcacgg aacggattgg tagaattcta
     4261 cgcgaatcac gggatgctga gttggttaat gacgatacaa agatgcgtct ggctgtagcc
     4321 atagccatcc gtttgcatac gcagaatgtc tcggatgatc gggctaatgc aggccgcatg
     4381 ccaggccctg cttacgctcg cgaccaccgt aacaaccgct tcggtcgacc atccttactg
     4441 aataatcgaa gtagccggag tacttggagg tgaatcgaat ggtgacctat gaaattgata
     4501 tcgatggaga gattttctct gtcgatattg aggatggaga ggacggggta ctgaacgctt
     4561 cagttggcgg agtaacctac caggtcaccc ttccagaggg tgctgaagta gccgctccta
     4621 gacggcgtaa tactggcggg aaaagtagag gaaaatctgg cacggtctcg acaagtatcc
     4681 ctggaaagat tgtgactcta gaagtgtctc caggcgacgc agtcactgaa ggacaagtca
     4741 ttctaatcct tgaggcaatg aagatgcaaa acgaagtcac ggcccctgtg actgggactg
     4801 taagtgcagt gaattgtgca gagggagaca atgtcgaagc aaacatggca ttggtagtaa
     4861 tcgaaccaga ggcacctgaa gaaacggttt cagaatgaaa ctagaagcaa tcattgaagt
     4921 catgtgaggt agagaggata gccaatgccg aactgtgacc acccaggatg caccgaggat
     4981 ggtgaagtca tctcacgcct ttccccggag ggttttctcg tagcaaccgg caagaaagca
     5041 tactctttca gagaggctta tcggcggttc cactattgta tgaagcacca cgatgaactc
     5101 atgactaatg tctggtctag agtcaggaca ccggatgaca aatctgacga tcatcccgct
     5161 cccacaatgg tttaattccc aaatttgttc agaatgaact atatttctac aacgtttcag
     5221 ttgtttatga atatgagatt caagagtgta attttatcca tgctaatgtt gttgagtatg
     5281 gttacaacaa tttcacaaat cgataactca caaggagaat cgattgaaga tttaccaagt
     5341 gatcaaatcc cagattcaac ttcttcaagg gctgcttccg actgggaatg gagcactgca
     5401 tttggttcca ccgagggtga tgatggatgg ggcatcgttg ttgatcaaga ctataccagc
     5461 tacgtcacgg gccaattcag agggactgta aattttggaa gttgtagtac atgcactcaa
     5521 acaagccaag gggattcgga cattttcatt gctaaactag accctcaggg ggatttcctc
     5581 tgggtgaaca cagccggcgg gtctactcaa gatgccccga taggccatat cacccaactg
     5641 gcaaatggca atctagcaat cgcaggatat gttggagcag gggccgctca attcgattcc
     5701 attcagctaa atccaacggg agttcgtggg atgttgattg cggcctttga tcaaactggg
     5761 aattggattt gggctacaga atattccggg gcccattctg tctcagatgt cagagcatac
     5821 gacatcacat ccgatgattc acacatctat gtaactggtg atttcgtgag atccatggtt
     5881 gtgaatggag ttacgcacaa tgcattcact accggcgtca gtgctggagc aaaagatctc
     5941 tttgtgatga aatcagatta ttcagggaat catgtgtggt cccagttctc gattggagga
     6001 gagagtcatg atggaggccg aggcatcgct gtggattcaa atcaaaatgt atacatcgca
     6061 gggatgcata gtgaaaatgc accattcggg aatacaacat tggccactaa cccaacgcat
     6121 agcacttcag tttacaacct atatgaggcg ttgattgcca agttggattc taatggaaat
     6181 tggctatggg caacttccca ttatggcccc catttagaca tcgctaaaga catcgttgtc
     6241 acccaagatg gattgggcgt agagaacatt gtagcaacca tttatgcgac caatgatctc
     6301 tcaattagta gtacgaacaa cgtcatttca ggtcctttca ataatttggc aaatcatatg
     6361 gttgtgactt cgaaattcaa catggatgga gagatgatgt ggtatgacgt tgtaactgga
     6421 tacgacaata tccctgcgga attgactact gcaccttcgg gagatgtgtt cctatgtggc
     6481 tatggtacga atttgggttc gatgacctcc catcactcag acccgcagta tgacgaccaa
     6541 tggaatactc tactagatga ttgggcaggg gatatgtggg ttgcaaaata cgagattgat
     6601 ggccaactcg attggattgt tacttccggt gcagaccccg ctcaatcgac cttgcgagat
     6661 tgtgcattga atcaagataa tgtcccatat gttgcaggtg gctttgatgg agattcgatt
     6721 tattcaacgc cccatcctga ttccgatgga acgctaaatg ctggtttatc acctggagca
     6781 gcacatgtta gagatggtgt ttttgggaaa ttaatcgacg attattccac ctctaatccg
     6841 gatccatgtg aacaattcaa cggcatgttg ggcccagttt gggacaatag taccgttaac
     6901 aatttagtcg ctggagatat ctacgaacat ccagagggtt caggcgtctt ttggcaagta
     6961 atcaattcca ctaacacaaa cgctgatcca ggaactaatg cagatatttg gagtgacgct
     7021 tgtacatgct atgaaatttg gtcctcaaca agtaacccaa tagtttggga tgttgtaggt
     7081 acatacgatt tgtacgatat tgtagaatat cccgcaggtt cgtatcaatt gtggcatgca
     7141 gtagacaatg ttccggcgaa tgaaattcct gatgacccaa ataattggcg attttggcag
     7201 ccctgtgaag gaactgaatg tgcccaattt aatggcacat taggtccagt ttgggattct
     7261 tcaacatcta attttgtatc tcctggagac cgatacgaat tcccggctaa ttcaggaata
     7321 ttttggatcg tcaacccgat tcacactcct ggttttacgg cggc
//
LOCUS       DUKB01000035           10437 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_157168, whole genome shotgun sequence.
ACCESSION   DUKB01000035 DUKB01000000
VERSION     DUKB01000035.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10437)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10437)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10437
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_157168"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2506
                     /locus_tag="HA345_01400"
     CDS             <1..2506
                     /locus_tag="HA345_01400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84043.1"
                     /translation="GDDSAVPALKVERRAWGQREFLERIISEYFVLIAESEGGISWRV
                     DAIDSDVSAALSNLTDRLEPLGWLPLLEEEEPYILEITQFPIRPVTISKSMHILLWFC
                     SMLFLTLIGSSWEVRVNPDSTVLTGSSLISGFVLYALPMMGTIALASILRRAVASAHG
                     VRVDHLLPISLPFTITGLNPIWPFGLIGILHLRRVDQILFPDRAVLARVSIVVPATLI
                     VSGLIFSILGLRATPGIPPEFTEMPFVLDLNWLVDITGTLFGFDVVARSQWASPLLLS
                     GHGLMVVGFILLLPIPNFPGDHLYTALRGSQDVVDTPEQARLLLLTVIPVILVYFTGQ
                     YWVWIAIGSLAVWRRFQSDAVPLPLVLNEATPPERSPGSWVIPVILCLLVASLPSLQI
                     SHAMTDWDGDLDTSDWLTDFDLGTENETVLKFDLQSSGVQSRSGLIHVSATGAVDGWL
                     FDIRCEGELDFNGTDCAYSINAVEYGLLEIRAVRPNQTIAGQINIGIHVEGSRGDMEI
                     HHSLILNSSGVPRILNQGWSKNDEGQSHCVQMVLDSIGQAANLSISPSSSSYSDWTLI
                     GGPNLSVMDAMNFTESEPMTVCANPSEVAIPLSERSTDGRLLGPKLILELDDGVRFVL
                     EAPLLNASTSVVSPLDGWPVNGNLPFAGEAIGWSQNVSSPCANFVTLDPMENFTWLPV
                     SGVEGYQIERFSEPIGNGTLNPPQEGIMTTCENGEPTIHSLVEGPSVLVDDGFLVLES
                     MYSGTGDIVLSNFGSEDVPLSSVLLASAPLSSVWDADLPQYIPSNGTVVVSMDRTDVQ
                     GGVSGIWFEVSGDGLLIRYVALCTNSPNESCSVVEG"
     gene            2509..3432
                     /locus_tag="HA345_01405"
     CDS             2509..3432
                     /locus_tag="HA345_01405"
                     /inference="COORDINATES: protein motif:HMM:TIGR00745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HIH84044.1"
                     /translation="MRIGILGVGAIGGLFLHRLSGIKSELHLLARGSTKDVLDERGLL
                     VHYDDEPDSLDVVPPQRFRNLASSTILDLVIVCGKNHDVTELTRIASQHLGENGMILF
                     VQNGIGHIERAVGLVGRERVLAGCVTHGVTRLNPGEIRLAGTGEVVIGPVSPDSSVMG
                     RVEVICELFERAELFPRAVVDGSIAVWRKLLLNLAINPVASIAGVENGKLLESPLREV
                     SVEVLMEGIEVARLEGMVFDMHKLVGDLELVLSSTANNRCSMLQDIIHGRRTEVDAIC
                     GALAAKAEIHGFAVPRIETLWNLVRSIENGS"
     gene            complement(3434..5038)
                     /gene="nadB"
                     /locus_tag="HA345_01410"
     CDS             complement(3434..5038)
                     /gene="nadB"
                     /locus_tag="HA345_01410"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HIH84045.1"
                     /translation="MSEEVLGFDVVVVGSGIAGLTMALEIARSGQDVAVVTKKRLEDS
                     STNWAQGGIAGVLDSSNQAAIERHIEDTISAGAGICDKELVRDVVSEAAVRIKALIEE
                     GVPFERRSDGEYDLAKEGGHQEKRILHVKDRTGEAIETTLIERLKQQNVTILEQWMAI
                     DLVMRKRGCPENGVRGIWCLDAEGIVHTICCRALVIATGGAGRLWRETTNPSVATGDG
                     VAMANRAGAGVKHLEFVQFHPTALAVQGKRPFLITEALRGHGAILMTIEEHRIFRTEG
                     GEPANYSYMLEKDPRGSLATRDIVARTTDQMLKKTGEPHVLLVTEHLDSDELKNRFPT
                     IADKLHNHGIRFGPDPIPVTPAAHYIVGGIDVGINGECLTKIGEVYPGLYAIGEVACT
                     GLHGANRLASNSLLEAIVMSHRARNHLLEHIDEYPLELKEAPIWRADGLHRLQEHAPI
                     KADRIALRTIMSDDVGLVRRDERLNRALRKLDNIGNEIERTWRASRPTKGLVELRNMS
                     IVARLVTQAAKERRNNIGLHYNMDLD"
     gene            5129..5860
                     /locus_tag="HA345_01415"
     CDS             5129..5860
                     /locus_tag="HA345_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84046.1"
                     /translation="MKPVARILILGMCLLIFCTVFLNIEYGLWQDGFVRQKVELVGLF
                     MGECNEQKILDDISATGTSDCLRPLGDYALIDFILIFMSGLISVLSANVLLGGGKSSR
                     SRSRRSSWAWMLLGSCLAIFAFLDLLGRSVPGQPGIAWDELIGLPRILVDCILIISGV
                     LVFRRGSQNHTQILDSNKRVLQRRMIDVDPDNLSIGQMRSALGLTILEDIFQLGSSDG
                     IDDPGRVCHYCSGAGCAECGMAGLL"
     gene            6034..9933
                     /locus_tag="HA345_01420"
     CDS             6034..9933
                     /locus_tag="HA345_01420"
                     /inference="COORDINATES: protein motif:HMM:TIGR02169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84047.1"
                     /translation="MGELTIDLEQGFTAITGPNGSGKSNSGDAIQFVLGTRSTKSLRA
                     QNVKELIFNGGGRAKPARHCKVTLTFANPVNDKGSRRLKVDGNEVRFTRAVRLNSKGK
                     AISDYRLNDAPSSSTEFRRLLIEAGARGDGYNIVLQGDVTNLASMSALERRRVLEDVA
                     GVTQYDDELKKADRQRKQVESQLEMIEVFEAEQNRRVESLEKEREDALKFRTLMEDLQ
                     TSRSLLMQAKHRSNFEEIRMLGEERSRYIESSEDLKDECERSELRIQELDDEIVRLQK
                     EMEALLGTDQRGTMERIRKLELQVDRASDRVSELESTSEKVLIEAKVLSTEIKRARDA
                     VESNLKVIDEATESLKRAKAAMAAAKKEESDARKAMEQGDRATMDLNRAYGKASEEVT
                     RLADRLQVSTLEMERARQAADISHGRLADLQESLQDAEMEVTDLDLTLEEMDVVDSAE
                     ERTRLGEELRRLDNQQTTLQREEGRARANRNEAERALVRSQQQMESRSGRSSNQAQAV
                     AAICAIRDSGGIEGILGPLNELCCPKDEAHALALSYALGGGMNHIVVENDEVATQCIR
                     RLKADRLGRAVFLPLNRMQVRRAGGRSLMVSRQPGIVGFAADLLEFDESIENAVRNAV
                     RDTLIVQNMEIARKNMGGVRMVTVDGSVFEASGAMVGGASKAPSATFGGGRAPGLSAV
                     EKAQVALSEAELVLMTVTSALEENRISQKTIRDKMSQVSDIDGSLRLREVKADLQRAQ
                     NLQKDLINQVKAAEKDLAHQSKALEKVESGAAAAEAARDAAVDERDRLLEQLRSQTPE
                     HLAKRLRDAETQYTESSRDALSSESTLTPGGERLSMMEDEVEKLEARKKDAEETSKAS
                     LSEIEQIKLNKVEWVGELDELKEAHSQVSEEHRELDELRTSHFEERATLKAQVDAMGS
                     KRVTIMTRITELNAEVDRKHIALKDLVEEMAENEISIPAEHEIIPAFTEIETKVRNLE
                     RRVSNMGSVNLLAIEQYDEAASRVAQLQADANALRERRERLLVIADQLETERRTRLTD
                     VLNRVSANFSRVYRILQPGGAGDLRLENPDDPFSGGLQMWAKPPGKSNQIELHLLSGG
                     EKSMAALALIFAIQDFEPSPFYYFDEVDQNLDSFNAESIAQLCRLRSERAQFLMVTLR
                     KVSLQLADHHIGVTHGGDGCSRLIMNFDRDAAVELGEAAEREREAQEAAKAEMEGLEE
                     LPRLEDRPRVPDALPTPESLGGIREDGVEVEATEVDSPEVDDSQAVSISHLGDRAADT
                     KEDLDERLEWESRLEESIASESEVPESKVIEESDIEE"
     gene            9945..>10437
                     /locus_tag="HA345_01425"
     CDS             9945..>10437
                     /locus_tag="HA345_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84048.1"
                     /translation="MEPLVSHDLRADIVTRLLGGEVDADSIPFIDRLVEIAEMENGEH
                     QMLVDPIDRSIALVFELFQSESLDPWDVDLTMFIDLFSERIETAEDIDLPSCGRLIRM
                     AWNILHAQTFSLIERHENWEDEVDDDDWMSDIGWEADFDDNEYGFSVNVLTGRAKDAL
                     PGLF"
BASE COUNT         2407 a         2382 c         2776 g         2872 t
ORIGIN      
        1 cggcgacgat tcggcggttc cggccctcaa ggtcgagcgt cgtgcgtggg ggcaacgaga
       61 gttccttgag cggattattt ccgagtattt cgtcctcatc gctgagtctg aaggcggtat
      121 ttcttggcga gtagatgcca ttgattccga tgtatctgcg gcgttgagta atctgacaga
      181 tcggttggaa cctctcggct ggcttccgct tttagaggag gaggaaccct atatccttga
      241 gatcacccag ttcccaatcc gtccggtgac aatttcgaag tcgatgcata ttcttctctg
      301 gttctgcagt atgttattcc tgacactaat tggctcatct tgggaggttc gtgtaaatcc
      361 ggattctacg gttttgacag gttcatcatt gatttctgga ttcgtcctat acgctctccc
      421 aatgatgggt acgatcgcat tagcgagtat tcttcgccga gcggttgctt ctgcacatgg
      481 tgtccgagtc gatcatttgt tgccgatcag cctgccgttt acgattacgg ggttaaatcc
      541 gatttggcca tttggcttga ttggcattct tcatcttcga cgtgtcgatc agattctctt
      601 tccagaccgt gccgttcttg ctcgagtatc aattgtggtt ccagctacgc taattgtatc
      661 aggtctaatc ttttccattc taggtcttcg agcgacaccc ggaatccctc ctgagtttac
      721 agaaatgcct tttgtcttag atttgaactg gcttgtcgat attactggga cattgttcgg
      781 ctttgatgtg gtagcacgtt ctcaatgggc atctcctctc ctgctttcag gacatggact
      841 catggtcgtc ggtttcattc tcctgcttcc aattccaaat ttcccgggag accatcttta
      901 cactgcttta cgtggaagtc aagatgtagt cgatacccct gagcaggcac gtctcttact
      961 tctgacggtt attccagtaa ttcttgtata tttcacgggc cagtattggg tatggattgc
     1021 aattggaagc cttgctgtat ggcgccgttt tcaatcggat gcagtcccgt taccattggt
     1081 acttaacgag gcaacgcctc ctgaaagaag cccaggtagc tgggttatac ccgtcattct
     1141 ctgtcttctt gttgcctctt tgccatctct acaaatatct catgcgatga ctgattggga
     1201 tggcgattta gatacctcag attggcttac cgattttgac cttggcacgg aaaacgagac
     1261 agttctcaag ttcgacctcc agagcagcgg agttcaatct aggtccggct tgattcatgt
     1321 gtctgcaact ggagcagtag atggttggtt attcgatatt cgatgtgagg gcgaactgga
     1381 tttcaatggg acagattgtg cgtactccat caacgcagtg gaatatggat tgttggaaat
     1441 ccgtgcagtt cgtcctaatc aaacgatagc tgggcaaatc aatattggaa tccatgttga
     1501 aggaagccga ggtgatatgg agatccacca ttcgttgatt ctcaattctt caggagtgcc
     1561 acgtatcctc aatcagggtt ggtcaaagaa tgatgagggg cagtcacatt gtgttcagat
     1621 ggtcctggat tccatcggac aggccgcaaa cctatcgatt tctccatcct cttcatctta
     1681 ctcggattgg acactcatag gcggtcctaa tttgtcagtt atggacgcga tgaactttac
     1741 agagagtgaa ccgatgactg tgtgtgctaa cccctctgag gttgctatcc ccctctctga
     1801 acgctctaca gacggacggt tgcttgggcc aaaattaatc cttgaactcg atgatggcgt
     1861 tcgtttcgtt ctcgaagcac cccttctcaa tgccagtacc tcagtagtat ctccccttga
     1921 tgggtggcca gtaaatggca atcttccatt tgccggcgaa gcgattggat ggagccagaa
     1981 tgtgtcttca ccatgtgcta attttgttac gttagaccct atggagaatt tcacttggtt
     2041 gccagtttct ggagttgagg gttatcagat tgaacgtttc tctgaaccta tcggtaatgg
     2101 tacattgaat ccccctcaag agggaattat gactacctgt gaaaatggtg aaccaactat
     2161 tcattctctt gtcgaggggc catctgtcct tgttgatgat ggatttctag ttctcgaaag
     2221 tatgtattct ggaacaggag atattgttct gagtaatttc ggctctgagg atgtccccct
     2281 ctcttctgtt ctacttgctt ctgccccgtt atcttcagta tgggatgcgg atttaccaca
     2341 gtatattcct agtaatggaa ctgtagtcgt gtcgatggat cgtactgatg tccaaggagg
     2401 tgtgtccggg atctggttcg aagtttcagg agatggtttg ctaatccgtt atgtcgccct
     2461 ctgcacgaat agtccgaatg agtcctgttc tgttgtggag gggtgattat gcgtatcggc
     2521 attcttggag taggtgccat cggtggcctt ttcctacatc gattatctgg aatcaaatct
     2581 gaattgcatc tacttgctcg tggcagcact aaggacgtgc ttgatgaaag aggtctacta
     2641 gtgcattatg acgatgaacc tgatagtcta gatgtagtgc cgccgcaaag gttccggaat
     2701 ctcgcttctt ccacaattct cgatcttgta atcgtctgtg ggaagaacca cgacgtcaca
     2761 gagcttacca gaatagcctc tcaacattta ggtgaaaatg gtatgatcct atttgtgcag
     2821 aatggtattg gccatatcga gagagccgtt ggtctcgtag gccgagaacg cgtgctcgct
     2881 ggttgtgtga ctcacggcgt gacgcgattg aatccgggtg agatccggtt ggctgggact
     2941 ggcgaggtgg tcatcggtcc cgtcagtcct gatagttctg taatgggtag ggttgaggtg
     3001 atctgtgaac tctttgagcg agccgaattg ttccctcgtg ctgttgtaga cggttcgatc
     3061 gccgtctgga ggaagttgct tctgaatctt gcaatcaacc cagtggcatc tatcgctggc
     3121 gttgagaatg gtaaactgct tgaatctcca ttacgtgagg tttcggttga ggttttgatg
     3181 gaaggcatcg aggttgctcg gcttgaaggc atggtcttcg atatgcacaa actcgttgga
     3241 gatcttgagt tggtattgtc ttcgacagcg aataaccgtt gcagcatgtt gcaagacatt
     3301 atccatggac gtaggactga ggtggatgcg atttgcggcg ctctggcggc caaggcagag
     3361 atccatggat ttgcagtacc tcggattgag acgttgtgga atctagttcg ttctatcgag
     3421 aatggatctt aattcaatct aaatccatat tgtaatgcaa tccgatgtta ttcctgcgct
     3481 cctttgccgc ctgagtcact aatctcgcga caatcgacat atttcgtagc tctacgaggc
     3541 cctttgttgg ccttgatgcc ctccaagtcc gttcaatttc gttgcctatg ttgtccaact
     3601 ttctgagggc gcgattcaat ctctcatccc ttcttacaag tcccacatca tcggacataa
     3661 ttgttctcag tgctatcctg tctgccttga tgggggcatg ttcctggagg cgatgtagtc
     3721 catcagccct ccatatgggg gcctccttga gttcgagtgg atattcatcg atgtgttcca
     3781 gaaggtgatt gcgggcgcgg tgagacatca cgattgcttc caagaggctg tttgaggcga
     3841 gccgattcgc accatgaagt ccagtgcatg caacttctcc gattgcatat agacccggat
     3901 acacttctcc aatcttagtc aagcattctc cattaatccc tacatctatt ccgcccacaa
     3961 tatagtgggc agccggggtt acagggatcg gatcgggacc gaatctaatc ccgtgattat
     4021 ggagcttatc cgcaattgta gggaatcgat ttttgagttc atctgaatcc agatgttcag
     4081 tgacaagtag gacgtgaggt tctccagttt tcttcaacat ctgatccgta gttctagcaa
     4141 ctatatctct ggtggctagg gatcctcgtg ggtctttttc cagcatatag gaatagtttg
     4201 caggttcccc cccctctgtt ctaaaaattc tgtgttcttc aatcgtcatt aagatggcac
     4261 cgtggccacg taacgcctcg gtgattagga aaggcctctt gccctgaacc gcgagagccg
     4321 tagggtggaa ctggacgaac tccaaatgtt tcactccggc tccagctcga ttagccattg
     4381 ccactccgtc tcccgtggca acactcggat tcgtggtttc tctccagagt cgcccggctc
     4441 cacctgtagc gatgactagt gctctacaac atattgtgtg tacaatacct tctgcatcta
     4501 ggcaccagat tccacgcact ccattctcag ggcatcctcg ttttcgcatg actaagtcaa
     4561 ttgccatcca ttgttcaagg atggtaacgt tctgttgttt gagtcgttca atgagtgtgg
     4621 tctcgattgc ttctccagtc cggtctttca cgtggagaat tcgtttttct tgatgtccgc
     4681 cttccttagc tagatcgtat tctccatcgc tccgccgttc aaatggaact ccttcttcga
     4741 ttagtgcctt gatgcgaact gcggcctctg atacgacgtc acgaaccaat tccttgtcgc
     4801 agattccggc ccctgctgaa atcgtatctt cgatatggcg ttcaattgca gcctgatttg
     4861 aggaatctag aactccagcg atgcctcctt gtgcccagtt ggtcgaggaa tcttctaggc
     4921 gcttcttggt aacgacagcc acatcttgcc cggagcgtgc gatttcaagc gccatcgtca
     4981 atccagcgat gcccgagccg actactacga catcgaagcc gagtacttct tcggacatat
     5041 ttgggggcgc acctttagtc gtcaataaga ttcgtgttca gtgttaattg acggaaccgt
     5101 caagaggcat tggaactgaa ttaacctcat gaagcccgta gcccggattt tgatcttggg
     5161 catgtgcttg ctgattttct gtacagtgtt tctcaacatt gaatacgggc tctggcagga
     5221 cggcttcgtt cgtcagaaag tcgagttggt aggattgttc atgggtgagt gtaatgaaca
     5281 gaagattttg gatgacatat ctgctactgg gacttcggat tgcttgcgtc ctttagggga
     5341 ctatgccctt attgatttca ttcttatctt catgtctgga ctaatctcag tcctttctgc
     5401 aaatgtccta cttggtgggg ggaaatcatc tcgcagccgc tcccgtcgta gttcatgggc
     5461 gtggatgctt ctaggctctt gtctggcaat tttcgccttt cttgatctgt tgggacgctc
     5521 agtcccgggt cagcctggaa ttgcatggga tgagttaatc ggtttgccgc gaatcttggt
     5581 tgattgcata ctcattattt caggagtact tgttttccgt cgaggttctc aaaatcacac
     5641 acaaattttg gattcaaata aacgagttct tcagcgtcgc atgattgatg ttgatcccga
     5701 taatctaagc attggtcaga tgcgttctgc actaggactt actattctag aagatatatt
     5761 ccaactcggt tcatctgacg gaatcgatga ccccggtcgc gtttgtcatt actgcagtgg
     5821 tgcaggatgt gcagagtgcg gtatggccgg cttgttgtga ctttggcgtt taacgttctg
     5881 tgaacaaaat cggtcggaca actaggcctt accgtgttga tttaagtggt ctaatgtccg
     5941 aacgtagtca ttggggtgca cgaatatgac tgcgaattat gaggtgatga tttgcatctg
     6001 aagcggatcg aattggagaa tttcaagtcc ttcatgggcg agttgacgat tgatctcgag
     6061 cagggcttta cagcaataac tgggccaaac gggtcaggga aatcgaacag cggtgacgca
     6121 atacagtttg ttcttggaac tcgttctacc aaatcattgc gtgcccagaa tgtcaaggaa
     6181 ttgatcttca atggcggtgg tcgcgccaag cctgcacgcc actgtaaggt gaccttgacc
     6241 tttgcaaacc ctgtgaatga caagggttcc agacgtctca aggtggatgg aaacgaggtc
     6301 cgatttaccc gggcagttcg ccttaatagc aagggcaagg caatatctga ctaccgcctg
     6361 aatgatgctc cttcgtcgag taccgagttt cggcgcctcc tgattgaggc aggtgcccga
     6421 ggagatgggt acaatatcgt cctccaaggt gatgtcacga atcttgcaag tatgtctgca
     6481 cttgaacgcc gacgtgtcct tgaagacgta gctggagtca ctcagtatga tgatgaactc
     6541 aagaaggcgg acaggcagag gaaacaggtt gaatcccaat tagaaatgat tgaggtcttt
     6601 gaagcggagc agaatcgtcg tgttgaatcg ttggagaagg agcgtgagga tgcactcaag
     6661 ttccgtaccc tgatggagga tttgcagact tcccgctcct tactgatgca agcaaagcat
     6721 cgatccaact tcgaagaaat acgaatgctg ggtgaagaga ggtcccggta catcgagtct
     6781 tctgaggatt tgaaggacga gtgtgaacgt tccgaattac gcattcaaga gcttgatgat
     6841 gagattgtac gcctccagaa agagatggaa gctcttctcg gtactgatca gcgcggtacc
     6901 atggaacgta tccggaaact agagttacag gtcgatcgcg caagcgatcg tgtcagtgaa
     6961 ttggaatcga cttctgagaa agttctcatt gaggctaaag tcctctcaac ggaaatcaag
     7021 cgagctcgag atgctgtcga gagcaatctg aaagtgattg atgaggcgac agagagtctc
     7081 aagcgtgcaa aggcagctat ggctgctgcc aagaaggaag aatctgatgc tcggaaggct
     7141 atggagcagg gagatcgtgc cacgatggac ctgaatcgtg cctatggaaa ggcatccgaa
     7201 gaggtgactc gcctcgcaga taggctccaa gttagtacac ttgagatgga gcgggcacgg
     7261 caagcggctg atatctctca tggtcgtctt gcagatcttc aggagtctct tcaagatgct
     7321 gagatggagg tgactgatct tgatttgacc cttgaggaga tggatgtcgt cgacagtgca
     7381 gaagagcgga cacgtcttgg cgaggaacta cgtcgcctag acaaccagca aactactctc
     7441 caacgtgaag agggtcgtgc tcgagccaat aggaacgagg cagaacgcgc cctcgttcga
     7501 tctcagcagc agatggagag tcgctctgga cgctcatcaa atcaggcaca agccgtggcc
     7561 gctatctgtg cgattcgcga cagtgggggc atcgaaggta tccttggccc acttaacgaa
     7621 ctatgttgtc caaaggacga agcacacgct ctcgctctat cttatgctct aggtgggggg
     7681 atgaatcaca tagtcgtcga gaatgacgag gtcgcaaccc aatgcattcg tcgcctcaag
     7741 gcagatcgcc taggtcgcgc ggtattcctg cctctcaaca gaatgcaagt ccgtcgtgca
     7801 ggaggtcgct ctctgatggt atctcggcaa cctggtatcg ttggatttgc tgctgactta
     7861 ctcgaattcg atgagtcaat tgagaatgca gttcggaacg ccgttcggga tactctcatc
     7921 gtacagaata tggagattgc aaggaagaat atgggtggtg ttcgaatggt cactgtcgat
     7981 ggttcagtat tcgaagcatc cggagcgatg gtaggtggag ccagcaaggc cccatcagca
     8041 acctttggtg gtgggagagc ccctggttta tcagccgtag agaaagcaca agtcgcacta
     8101 tcagaggcgg aacttgtcct gatgactgtg actagtgctt tggaggaaaa tagaatctca
     8161 cagaagacga ttcgcgacaa gatgtcccag gtatctgaca ttgatggtag tttacgtctc
     8221 cgcgaggtaa aggccgattt acagcgtgcc cagaatctcc agaaagatct catcaatcag
     8281 gtgaaagccg cggagaaaga tcttgcgcac caatctaagg cgcttgagaa ggtcgaatcg
     8341 ggcgctgcag cggctgaggc cgccagagat gctgcggttg atgagcgtga ccgcctccta
     8401 gaacaactcc gttctcagac tcctgaacat cttgcgaagc gtttgcgtga tgcggagaca
     8461 cagtacactg agtcgtctcg ggatgcactt tcctcggaat caactctcac ccctgggggg
     8521 gaacgtctga gtatgatgga ggatgaggtg gagaagctcg aagcacgaaa gaaggatgct
     8581 gaagagacct ccaaggccag cctttcagag attgagcaaa tcaagctcaa caaagtggag
     8641 tgggttggtg aactcgatga actcaaggaa gcacacagtc aggtaagcga agagcatcgt
     8701 gaattggacg aacttcggac ctctcacttc gaggagcgag cgacgctaaa ggctcaagtg
     8761 gatgcgatgg gttccaagag agtcacgatt atgactcgga taacggaact gaacgctgag
     8821 gtggatcgca agcacattgc actgaaggat ctcgttgaag agatggcaga gaatgagatt
     8881 tctatccctg cggagcacga gattattcca gcctttactg aaatcgagac gaaggttcgg
     8941 aatcttgagc ggcgtgtatc taacatgggc agcgtaaact tacttgcaat cgagcagtat
     9001 gatgaggctg cctcccgggt tgctcaactt caagctgatg cgaatgctct ccgtgagcgc
     9061 cgtgagcgac ttctcgtcat cgcagatcag ttagagacag agcgtaggac acgcttgaca
     9121 gatgtcctta atcgcgtctc tgcgaacttt agtcgagttt accgaattct acaaccaggt
     9181 ggcgccggag atttacgtct tgagaatcca gatgatccat tttctggtgg tctccagatg
     9241 tgggcaaagc ctcccgggaa gagcaatcaa atcgaacttc atttactgtc tggtggcgag
     9301 aaatcgatgg cggcactcgc cctcatcttc gcaatacagg atttcgaacc gtcgccgttt
     9361 tactactttg atgaggttga tcaaaatctt gactcattca atgccgagag tatcgctcaa
     9421 ctctgtcgtc ttcgaagcga gcgagcccag ttcctcatgg ttacattacg taaggtcagc
     9481 ctacagttgg cggatcatca catcggcgtg actcatggtg gtgacggatg tagtcgtcta
     9541 atcatgaatt tcgatcgcga tgcagcagtc gaactcggag aggcagcaga gcgcgaacgt
     9601 gaagcccagg aagcggccaa ggctgagatg gaaggccttg aggaacttcc gaggctggag
     9661 gaccgtccta gggtgccaga tgcactacct acgcctgaga gcctcggagg tatccgtgag
     9721 gatggggttg aagttgaagc aactgaagtt gattctccag aagtggatga ttctcaagca
     9781 gtcagtatat ctcatcttgg cgatcgtgct gctgatacta aggaagatct tgatgagcgt
     9841 cttgaatggg agagtcgcct cgaagaatcc attgcatccg aatcagaggt tcctgaatcc
     9901 aaggtcattg aagaatcgga cattgaggag tgaggtggtt ctctttggaa ccccttgtat
     9961 ctcatgattt gcgtgctgat atcgtaacgc gtcttttggg tggtgaggtg gatgcagatt
    10021 cgattccatt tatcgatagg ttagtcgaga ttgcggagat ggagaatggt gagcatcaga
    10081 tgcttgtcga cccgattgat cgctcaatcg ccctagtttt cgagttgttc caatccgagt
    10141 ctcttgatcc atgggatgtt gatttgacga tgttcattga tctgttcagt gagcgaatcg
    10201 agaccgctga ggatatcgat ctaccaagtt gtggccgcct cattcgtatg gcttggaata
    10261 tcctccatgc tcagacgttt tctcttattg agcgacatga aaattgggaa gatgaagttg
    10321 atgacgatga ttggatgtct gacattgggt gggaggcaga ttttgatgat aatgagtatg
    10381 gattctcagt caatgttctg accggccgtg ctaaggatgc cctccctggc cttttcc
//
LOCUS       DUKB01000036            4437 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_314896, whole genome shotgun sequence.
ACCESSION   DUKB01000036 DUKB01000000
VERSION     DUKB01000036.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4437)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4437)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4437
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_314896"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2473
                     /locus_tag="HA345_01430"
     CDS             <1..2473
                     /locus_tag="HA345_01430"
                     /inference="COORDINATES: protein
                     motif:HMM:NF020243.1,HMM:NF026115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HIH84049.1"
                     /translation="RVFFDASVSTGPIRERDGEGDILRADPSNADQMLEVARIVREIA
                     PPAGIVHLAPVRLAGVPWEDVTTTAHLDQSITGLFSILKGLDEDLRDVEDGLVASVSA
                     LDGRHGIGGDRFNAIAAGAHGGIKSYGRERLHLRSRAVDLDPGLLEEPDTLAEMLLSE
                     LLEQSGPREVAVERDGTRYRLSLYEEALETESTPLLDDDVWVVSGGGAGVTARSIIEV
                     ARRSQGIGARFVLLGRSSLDLDQERFLDLGEDELEAERMSLREKMIEESDDGHVSLKQ
                     WNDSWNRWLRGLEIHNTLKAIGATGNRANYVSVDVTDGESTHSALHSVSEEWGPVTGI
                     VHGAGIEDSTPFERKDPEVFQRVLQVKIQGWRNLTSALEHDLPNMRFLSVFTSIAGRQ
                     GNAMQFGYCAANQVLDVEMARIAAHGEAPRAVAIAWAPWADVGMATRGSLESVFDQAG
                     IDMISADDGASRFADEALCSGKRMVMIAGQLGQLDDEDSIRPPPQRLPQNVANLLADP
                     MRFPLIGHIEELIPYTSVTYSTVIDSERHPHLKDHSIDEVPYMPGVMALEAFAEGAVL
                     LWPLCAVDGFDEVEFGLPVKVTKDSKSIRVKAEFDRQDDDHIWIRCHLETDLTNSSGE
                     IFGEPTIHHRGIVRLLKSGGSAEQVGDHNLGQVTMSSAIHGPSFVYERMFHGPRFQVH
                     GGVIGGVDVGGNRGLDGHILRRDELPNQELFAEESRGQRMHLEFLPMVVEGCLQNAGL
                     VSMEVDGLESLPVGIDHLDMDVSSFSGSLRVRTVRRSIDDQGVTTHDAVVVNEDNAVL
                     MHVLGLRLKGMTPIPEGEQFTFSDA"
     gene            2545..3120
                     /locus_tag="HA345_01435"
     CDS             2545..3120
                     /locus_tag="HA345_01435"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013786.1,HMM:NF036823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HIH84050.1"
                     /translation="MKVDSEYILDVEGLPLTNPSQIARMVPKRRNQHIAGRLCLIDLL
                     QRQGLNPLSGELNLTSDGLRFSDGESDITVSIAHSESLAVAVLFDGGKRIGIDCEPQN
                     RDISEGALQEFCTPQEIRSLVASDSSVRLHHWMVKEAVGKATGEGMSASRRIHVASTE
                     ATLDGIRYSVHSIPETILNHRVVIAILHSDS"
     gene            complement(3105..3320)
                     /locus_tag="HA345_01440"
     CDS             complement(3105..3320)
                     /locus_tag="HA345_01440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84051.1"
                     /translation="MRPRQILGLIMVFVFLPLNSGLYLSLLGGEDATGRVPGNIACYM
                     ILLFILGAVLLLTPTRQQKYVAYHESE"
     gene            complement(3373..>4437)
                     /locus_tag="HA345_01445"
     CDS             complement(3373..>4437)
                     /locus_tag="HA345_01445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84052.1"
                     /translation="DLWVYENNGWIICSEVGALPTYEMQVGVVSASMQETLDSIGTCP
                     GIGEWAFEDVPIFGFFMVAFSPFVSIIALLIMRTSMKQFESEEHHDSSNRLTSRSLYI
                     GFLGKVIGNMLFFTTLFIVIPMLGGGFGDAPSFGEMLVRDLANSRGFTDILYEYAWVF
                     TGLMMPLPFAFEGMMFAYAAMKDTVLGIDSKLRRTFRNSIFTGLGAISFLVGSELMES
                     LIGFGALGGVFLGAGILVVRKPIISSLDRFSNKIIPTALDDVENAYLQAYSASGADGV
                     ITEAERRILLATADALNISHERAAELEDGFDPKVADNTPQVATEPTAVQQWTDEAGHT
                     WRSMDDGTIMWWNGTDWQQV"
BASE COUNT         1130 a          988 c         1145 g         1174 t
ORIGIN      
        1 ccgggtcttc tttgatgcaa gtgtttccac tggcccgatt cgtgagcgtg atggagaggg
       61 ggatatcctc agagcggatc catccaatgc tgatcagatg ctcgaggttg cacgtattgt
      121 tcgtgagatt gcaccaccag cgggcatcgt ccacctcgca cccgtacgtc ttgcaggcgt
      181 gccttgggag gatgtgacaa caaccgctca tctcgaccaa tccatcactg gtctattcag
      241 tatcctgaag ggattggatg aggacctccg cgatgtggag gatggacttg tagcatcggt
      301 ttcagctctt gatggtcgcc atgggattgg aggtgaccgg ttcaacgcga ttgcagcagg
      361 tgctcatggt ggaatcaaga gttatgggcg tgaacgcctt catctcaggt cgcgtgcagt
      421 cgatcttgat ccaggattat tggaagagcc tgataccctt gctgaaatgc tccttagtga
      481 attgcttgaa caaagcggac cacgcgaagt cgcagtagag agggacggaa ctcgataccg
      541 attaagcctc tatgaggaag cactggaaac ggaatcgacc cctttgctcg atgacgacgt
      601 atgggttgtc tcaggtggtg gtgcgggtgt aaccgcacgt agcatcattg aggtcgcgcg
      661 tcgttctcaa ggcataggtg cacgattcgt cctactcgga agatcctcat tagatctcga
      721 tcaggaacga ttcctcgatt tgggagagga tgagctggaa gcagagcgta tgtcattacg
      781 tgagaagatg atcgaggaga gcgacgatgg ccatgtgtca ctcaaacagt ggaacgattc
      841 ttggaatcgt tggctgcgtg gtcttgagat tcataataca ctcaaggcca tcggagcaac
      901 tgggaatcga gcaaattacg taagcgtgga tgtcacggac ggtgaatcca ctcactcggc
      961 tctgcatagt gttagtgagg aatgggggcc tgtcacggga atcgtacacg gtgcgggcat
     1021 agaggattct acacccttcg aacgtaagga tccggaggta ttccaacgag ttcttcaggt
     1081 caagattcag gggtggcgta atcttacttc tgctctggag cacgatcttc caaacatgcg
     1141 tttcctgtct gtattcacta gtattgcagg tcgtcaagga aatgcgatgc aattcggtta
     1201 ctgtgctgcc aatcaggtac tcgatgtaga gatggcacga attgccgctc atggagaagc
     1261 cccacgagca gtcgcaattg catgggctcc ttgggctgat gtcgggatgg caacacgagg
     1321 ttcactcgaa tccgtgttcg accaagcagg aatcgatatg atatcggcag atgacggggc
     1381 ttccagattt gctgatgagg ctctttgttc agggaaacgc atggtcatga ttgctggcca
     1441 actcggtcaa cttgacgatg aggattccat ccggccaccg ccacaacgcc tcccacagaa
     1501 tgttgcaaat cttcttgcag atccaatgcg tttcccgcta attggccata ttgaggagct
     1561 tattccctat acttctgtga cctattccac agtgatagat tccgagcgac atcctcactt
     1621 gaaggatcac tctatcgatg aagtaccata catgccaggg gtcatggccc tcgaggcctt
     1681 tgcagagggt gctgttctat tgtggcctct ttgtgctgtt gacggctttg atgaagtcga
     1741 atttggcctt cccgtcaagg taacgaagga tagcaaatcg attcgagtta aggcagagtt
     1801 cgatcgacag gacgacgatc atatctggat ccgttgtcat ctagaaacgg atctcacaaa
     1861 ttcttcgggc gagatatttg gtgaaccgac gattcaccat cgagggattg tccgattact
     1921 gaagtcaggt ggttccgccg agcaggttgg agaccataac ctcggacaag ttaccatgtc
     1981 gtcagcaatt catggtccaa gtttcgtcta tgaacggatg ttccatggtc cccggttcca
     2041 ggtccatggt ggagttattg gtggcgtaga tgtaggtgga aatcgaggtc ttgatggaca
     2101 catccttcgc cgcgatgagc ttccaaatca ggaattgttt gccgaagaat ctcgaggtca
     2161 gcgcatgcat cttgaattcc ttcctatggt ggtggaaggg tgcttacaga atgcaggttt
     2221 agtttccatg gaggtagatg gattggaatc cttacctgta ggcatcgacc atctagacat
     2281 ggatgtctcc tctttctccg gatcattgag ggtgagaact gttcgtcgga gtatcgatga
     2341 tcaaggtgtg acaacccatg acgcggttgt ggttaacgag gataatgctg tattgatgca
     2401 tgttttgggt ctacgactca agggcatgac tccgattcca gaaggcgagc aattcacttt
     2461 ctcagatgca tgatagggga tgagaatctg cggggtagac cgcatcagat tgaatctggc
     2521 atagcatcgg tacatgtttg ttggatgaag gttgattctg agtatatctt agatgtcgaa
     2581 ggattaccat tgacaaatcc ctcacaaatt gctcgaatgg tccccaagcg gaggaatcag
     2641 catattgctg gacggttgtg cctcatcgat ttacttcaga ggcagggttt gaatccatta
     2701 tccggtgaat tgaacctgac ctcagacgga ttacgattca gtgatggaga atccgatatt
     2761 acggtgagta ttgcacatag cgaatctcta gcagtggctg tattgtttga tggtggaaaa
     2821 aggattggta tcgactgtga acctcagaat cgagatattt cagaaggcgc attacaggag
     2881 ttctgtacac cgcaggagat tcgatcattg gtggcctcag attcgtcagt gagactgcat
     2941 cattggatgg tcaaagaggc ggtagggaag gcaaccgggg aagggatgtc tgcatctcgt
     3001 cgcattcatg ttgcttctac agaagctaca ttggacggga ttagatacag tgttcacagt
     3061 atccctgaga cgatattgaa tcaccgagtt gtaattgcta ttcttcattc agattcgtga
     3121 taagcgacgt atttctgctg ccgagtgggt gtcagaagga gcactgctcc taggatgaat
     3181 aggagaatca tgtagcatgc gatgtttcca gggacacgac ccgtggcgtc ttcaccgccg
     3241 agtaggctca gatagagtcc tgagttcaat gggagaaata cgaagaccat gattagtccg
     3301 agaatctgcc ttggtcgcat aacctgtcga gttcatggtt tactcatgaa tacgtggttt
     3361 gactcttttg agttacactt gttgccaatc tgtaccattc caccacataa tcgttccatc
     3421 atccattgaa cgccaagtat gcccggcttc atcagtccat tgttggacag cagtaggttc
     3481 tgtggctact tgtggagtgt tatctgccac tttaggatca aaaccatcct caagttctgc
     3541 tgctcgttca tgtgagatgt tcagagcatc tgctgtggca agaaggattc tacgctcagc
     3601 ctcagttatc actccatctg ccccagaggc agagtaggct tgcaagtatg cgttttctac
     3661 atcgtccaat gctgttggaa tgattttgtt gctaaaacga tctagagaag aaatgattgg
     3721 tttacgaaca actaggatac ccgctccaag gaatactcct cctaaggctc cgaatccgat
     3781 taatgactcc attaattcac ttccaactag gaatgatata gctcctaaac cggtgaaaat
     3841 cgaattgcga aatgtcctcc tcaacttaga atcgataccc aatacggtgt ctttcatcgc
     3901 cgcatatgca aacatcattc cttcgaatgc aaatggtaaa ggcatcatga ggccagtaaa
     3961 tacccatgcg tattcataca atatatccgt aaatcctcga gagttagcta agtccctaac
     4021 aagcatttca ccgaatgatg gtgcatctcc aaaaccacca cctaacattg gaataacaat
     4081 gaaaagtgta gtgaagaata gcatatttcc gattaccttg ccaaggaatc caatgtatag
     4141 ggatcgagaa gttaaacgat tactactgtc gtggtgttct tcagattcga attgtttcat
     4201 tgaagtccgc atgattaaca gtgcaataat cgatacgaat ggggaaaaag caaccataaa
     4261 gaaaccaaat attggtacat cctcaaatgc ccattcgcca attcctggac aagttccgat
     4321 tgaatcgagc gtttcttgca tcgatgcact gacgactcca acttgcattt cgtacgtagg
     4381 tagtgcacct acttctgaac aaataatcca tccattattt tcgtataccc agagatc
//
LOCUS       DUKB01000037            5145 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_231480, whole genome shotgun sequence.
ACCESSION   DUKB01000037 DUKB01000000
VERSION     DUKB01000037.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5145)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5145)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5145
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_231480"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(325..759)
                     /locus_tag="HA345_01450"
     CDS             complement(325..759)
                     /locus_tag="HA345_01450"
                     /inference="COORDINATES: protein motif:HMM:NF014584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84053.1"
                     /translation="MKGTEPKSLTKGFGPSRKITAMDIRPLLLVAAGGAIGAILRYQI
                     TLTLPMESHWATMGINLLGALLLGILAGGLHGGGVISDDLLLFFGTGLLGAFTTMSTF
                     SLDLATLFDADRFGTIGIHLVATGVLGPALALAGWKLTAIVL"
     gene            784..1785
                     /locus_tag="HA345_01455"
     CDS             784..1785
                     /locus_tag="HA345_01455"
                     /inference="COORDINATES: protein motif:HMM:NF013922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84054.1"
                     /translation="MHLHWDWRLARVVDAEGVIIDESVWDGVRSSGLVADRIEMVRRK
                     RMTPEARDIFERFPEVDFSSINPESWPPFTSEEMSLLDQASIILARRGLEESAGDVDR
                     RMEHLVHAVEEMRISWTTMESRVVEWVGLFLTGIDLDEQRRNIVTEAAASSSFEDLLQ
                     RLATDSPQHSPTDEEWVAIQGASSSAVEMSGRIKDAELAIRIHAESHIPSLSALLGPL
                     LAARMTVAAHGRARLSRLPSSTVQVLGAEKAFFAHLRTGSPPPKHGMIFQHPWISRSP
                     RWVRGKISRLVAGKASIAVRVDEHGGKAWGDEEIAAIERAVQAVRSRHPKPPSKRRR"
     gene            1790..2491
                     /locus_tag="HA345_01460"
     CDS             1790..2491
                     /locus_tag="HA345_01460"
                     /inference="COORDINATES: protein motif:HMM:NF003276.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HIH84055.1"
                     /translation="MADDSGKIGWGVQRRGRGLWTRNAVKGVRLRDENLRRDGRIEWR
                     SWNPRASKLAAALIRTKRDPALLIPEPGSTALYVGAGHGTTISHLHDHLCGSDNHHGG
                     RIVAVDLSPRCIRDLIRLSVARSGISPVLADARRLDEFAPFVPERVPWILQDVSQAGQ
                     VELMIRICERFLAPSGVALLSLKAASERWADGGDEAKFAQAEERLTSSNLQLNERIDL
                     RGFEDQHVMFVIRAD"
     gene            2536..3432
                     /gene="mutM"
                     /locus_tag="HA345_01465"
     CDS             2536..3432
                     /gene="mutM"
                     /locus_tag="HA345_01465"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012112518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HIH84056.1"
                     /translation="MPELPEVETVRRGLAPYLEQRTIKRVILRRPDLRFPFPDGLAGR
                     IEGKQVQRIGRRGKYLVFQIQDGSMLLNSLGMSGRWTLSGPSIAFTPGTFAHGASIGT
                     GDGPHDHLVMEFEGGIQATYTDARRFGYVHLIEPGCMDDDPFLCVLGPDPLDPKFDAK
                     TLAGRLRGRRTPMKAALLDQSTVAGLGNIYVSEILHRAGVSPRRTAMTLVRKDGSPTA
                     RLERIVSETIVVLEQAIEAGGSTLQDFRGVSGEDEVGWFPVNFTVYGREGEFCKSVGC
                     SDTIRRIVQSNRSTFFCPSCQR"
     gene            3499..4146
                     /locus_tag="HA345_01470"
     CDS             3499..4146
                     /locus_tag="HA345_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010584960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HIH84057.1"
                     /translation="MTSTTTAKGLAEFIGTLFLTLTIFTAAVAGSAGAFAPVAIGMML
                     MVMVYAVGHISGAHFNPAVTIALFIKGDCSKDDAPVYIGAQVVAGVVGGLLGLHVLTG
                     APEITAQEFGDTTVAVLAAELLFTFALMYVILNVATEQDGNPFYGAAIGFTVMAGAFT
                     VGAISLGSFNPAVTGMLMVTGKMAIADCWMHLLPQVAGAVAAVYAHSATMATSEA"
     gene            complement(4152..>5145)
                     /locus_tag="HA345_01475"
     CDS             complement(4152..>5145)
                     /locus_tag="HA345_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008357876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HIH84058.1"
                     /translation="NFYSVSISGYHIAEAGANPITQAALTLSNGLTYVELFRARGLDA
                     NKFLRNFSWFFSNGMDPEYSVIGRVSRRIWSIAMREMYDVGERGQKLKYHIQSSGRSL
                     HAQEYTWNDYRTTMQALYALADNANSLHTNSRDEAFGTPTEDTVRDAVAIQLILSREY
                     GWLQNENPLQGSFVAEWLTDHVEEQILGVFEEMHRRGGVLGSLEVNYQRNRIQDESML
                     YEHKKHDGTLPIIGVNTFTDPEAEALSADNADSFDMDVTRSDESEKRMVIKRNRKFQQ
                     EHTEASEVGIARLKQVAREGGNLFEAMMDIVEYCTVGQVTQALFETGGKFRRNM"
BASE COUNT         1116 a         1243 c         1388 g         1398 t
ORIGIN      
        1 ggagaatttt aaaccagcat tatgaaaata ttgctctccg actcagcaat gacttccttg
       61 agatgtttga gatcggatgc cttggaggtg gaactggcgt tgacaaggtc gatctctttc
      121 ccgtcaatct ccagattctg attaatcggc ccattgtaac cgcaggcgtg atttggacat
      181 ttgataatcc ctgatggatc agggaaggat aattcaccac atttcggaca gaacatactt
      241 gctcaccttc gttgtgcatt tactacacaa taggttcagg gagaagtgtc ctgttttcaa
      301 ttctcgcttt gttcgtgacc gattctagag cactattgca gtcaatttcc atcccgccag
      361 tgccagggct gggccaagga cgcctgttgc aacgagatgt atgcctattg taccgaagcg
      421 gtcagcatcg aacagggtag caagatctag actgaatgta ctcatcgtag tgaaggcgcc
      481 aaggagtcca gtcccaaaga agaggagcaa atcatctgag atgacacctc caccgtggag
      541 gcctccagca aggataccta agaggagtgc gccaagtaga ttgatcccca ttgtggccca
      601 atgactttcc attggtagag tgagtgtaat ctggtatctc agaatggctc cgatagcacc
      661 gcctgcggcg acaaggagta gggggcgtat atccatagcc gtaattttcc gactgggtcc
      721 aaagcccttc gtgagagatt ttggttccgt tcccttcatg catctgagcc ccctccaagg
      781 ggcatgcatc tgcactggga ctggcgccta gcgcgcgtcg ttgatgctga aggtgtcatc
      841 attgacgaat cagtttggga tggtgtccgt tcctcaggat tagtagccga tcgtatcgaa
      901 atggttcgaa gaaaacgtat gactccagag gcgcgggata tctttgagag atttcctgaa
      961 gtcgattttt cttccatcaa tccagagagc tggcctccgt ttacctccga ggagatgtca
     1021 cttctcgacc aagcctccat cattctcgca cggcgtggat tggaggaatc tgcgggtgat
     1081 gttgatcgaa gaatggaaca cctagtccat gccgtggaag agatgcgtat cagttggact
     1141 acgatggagt cccgtgttgt ggagtgggta gggttattct tgactggaat tgatctcgat
     1201 gaacaacgtc gtaatattgt cactgaagca gctgcttcct cttccttcga ggaccttctt
     1261 cagaggcttg caactgattc gcctcaacac tctcctacgg atgaagaatg ggttgccatc
     1321 cagggggcct catcctcagc agttgagatg tcgggacgaa ttaaggacgc tgagttagcc
     1381 attcgtatcc atgcggaatc ccatatcccc tctcttagtg ctcttctcgg gcccctgttg
     1441 gctgcacgta tgacggtggc cgcacacggg cgagcccgtc tctcccggct cccgagtagc
     1501 acagtccaag ttcttggagc ggagaaggcg ttcttcgcac atcttcgtac gggttcccct
     1561 cctccaaagc atggtatgat ctttcaacac ccgtggattt cgagatcacc tcgttgggtt
     1621 cgggggaaga tatctcgcct cgtagctgga aaggcttcga ttgcagtacg tgtcgatgag
     1681 catggcggca aggcatgggg tgatgaggag attgccgcaa tagaacgggc ggttcaagcc
     1741 gttcgttctc gacatcctaa gccgccatcg aagcggcgga ggtgatgctt tggcggacga
     1801 ttctgggaag attggttggg gcgttcagcg tcgtggtcgc ggtctttgga ctaggaatgc
     1861 ggtgaaaggt gtccgtcttc gtgacgagaa tcttcggcga gatggccgga ttgaatggag
     1921 gtcgtggaat cctcgggcct ccaaactcgc agcggcattg attcgaacta agagggaccc
     1981 cgctctcttg attcctgagc ctggttcgac cgccctctac gttggtgctg gtcacggtac
     2041 aacgatttct catcttcacg atcatctgtg cgggtcagat aatcaccacg ggggccgtat
     2101 cgtcgctgtt gatctctcgc cgcgctgtat tcgtgatcta atccggttgt cagtggcccg
     2161 ttcgggtatt tcccctgtcc ttgcagatgc acgtcgtctt gacgaatttg caccttttgt
     2221 ccctgaacgt gtaccttgga ttctccaaga tgtgtctcaa gctgggcagg tcgagctcat
     2281 gattcgtatc tgtgaacgtt tccttgctcc tagtggtgtt gctctcctct cgctgaaggc
     2341 tgcttctgag cgttgggctg atgggggcga cgaagccaaa ttcgcgcaag cagaggagcg
     2401 tttgacatcc tccaatttac aactcaatga gagaattgac ctccgtggtt ttgaggatca
     2461 acatgtcatg tttgtaatcc gtgctgacta atgctatagc cacatcctca tggaggggta
     2521 acgtttggcc tgttcatgcc tgaactgcca gaggtggaga cggtgcgtag gggacttgca
     2581 ccctatctcg aacagcgcac catcaaaagg gtgattttac gacggccaga tttacgattc
     2641 cctttccctg atgggcttgc tgggcgaatc gaagggaagc aagtgcaacg aataggaaga
     2701 cgtggtaagt atctcgtttt ccagattcag gatggtagta tgttactcaa ttcgcttggt
     2761 atgtccgggc gttggacttt gtcgggcccg agtatcgcgt ttactccggg gaccttcgct
     2821 catggagcat cgattggtac gggggatggt cctcatgacc acctcgtgat ggagtttgaa
     2881 ggtgggattc aagcaaccta tactgatgcg cgccgcttcg gatatgtgca cttgattgaa
     2941 cccggttgta tggatgatga tcccttcctc tgtgttctcg gccctgatcc actcgaccct
     3001 aagttcgatg caaagacact cgctggtcgt ttacgtggga ggcggacgcc catgaaagcg
     3061 gccctactcg accagagtac cgttgccggt cttgggaata tctacgttag cgaaatcttg
     3121 catagggcag gggtttctcc acgaaggact gcgatgacac ttgtccgcaa ggatggttcc
     3181 ccgactgcac gcttagagcg gattgtatca gagacaattg tggttcttga acaggcaatc
     3241 gaggcaggag gttcaacgtt gcaggatttc cgaggagttt caggtgagga tgaggtgggt
     3301 tggttcccag tcaatttcac agtgtacggg cgagagggag aattctgtaa aagcgtgggt
     3361 tgctcagata cgatacgccg aatcgtccaa tcaaaccgtt ccaccttctt ctgtccctct
     3421 tgtcagaggt gaggaatcaa tatctcttca atttctagac catgcatggt taagttaggg
     3481 tcgttacagg attgtatcat gacttcgact actactgcca aaggtcttgc tgagttcatt
     3541 ggtacacttt tcctgactct gactatattc actgcagcag tcgctggaag tgcaggagcc
     3601 ttcgcacctg ttgcgattgg tatgatgctg atggtaatgg tctatgcagt cggacatatc
     3661 tctggtgctc acttcaatcc agccgtgaca atcgccctct tcatcaaagg ggactgttcc
     3721 aaagatgatg ccccagtcta cattggcgca caggttgttg caggtgttgt agggggtctt
     3781 ctaggtctcc atgttctaac tggtgcacct gaaattactg ctcaggagtt tggagatacg
     3841 acagtcgcag ttttggcagc cgagctcctg ttcacattcg ctttgatgta tgtgatccta
     3901 aacgtcgcaa ctgaacagga tgggaatcca ttctatggtg ctgcaatcgg tttcactgta
     3961 atggctggcg cattcactgt cggtgcaatt tctcttggtt catttaatcc tgcagttact
     4021 ggaatgctga tggttactgg caagatggct attgctgatt gttggatgca cttactgcca
     4081 caagtggctg gtgctgtggc tgcagtctat gcgcacagtg ctacgatggc tacttccgag
     4141 gcttgaccat ctcacatgtt acgacggaat tttccacctg tctcaaagag ggcctgagtc
     4201 acctggccga cagtgcagta ttcgacaata tccatcatgg cttcgaagag gttaccgcct
     4261 tctctagcta cctgcttgag tcgagcgata cccacttcgg atgcttccgt gtgttcttgc
     4321 tggaacttgc gattccgttt gatgaccatt cgcttctcac tttcgtctga acgggtcaca
     4381 tccatgtcga atgagtcggc attgtctgca ctcagtgcct ctgcttcagg gtccgtgaag
     4441 gtgtttacac caatgattgg caaggttccg tcgtgcttct tgtgttcgta gagcattgat
     4501 tcatcctgaa tccgatttcg ttggtagtta acctcgagtg aaccgaggac tccgcctcta
     4561 cgatgcattt cctcaaagac ccctagaatc tgctcttcta catgatctgt gagccattcc
     4621 gcgacaaagg atccttggag aggattctcg ttttgcaacc aaccatattc gcgacttagg
     4681 atcagttgta ttgctacggc atcgcgcact gtgtcctctg tgggcgttcc gaaggcttcg
     4741 tcccgactgt tagtgtggag tgagttggca ttgtccgcga gcgcgtacaa ggcttgcatg
     4801 gttgttctgt aatcgttcca tgtgtattct tgagcgtgta gtgagcggcc agatgattgg
     4861 atatgatact tcagcttctg gccccgttct cctacatcat acatttcgcg catcgcgatg
     4921 gaccagatgc ggcgactaac acgtccgatg acgctgtatt ctggatccat cccgttggag
     4981 aagaaccaag agaaattacg taggaacttg ttagcatcaa ggccccgcgc gcgaaataat
     5041 tcgacatagg tcaatccatt tgagagtgtc agagctgctt gagtgattgg atttgctcca
     5101 gcttcagcaa tatgataacc agaaatagaa acagaataaa aattt
//
LOCUS       DUKB01000038            2830 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_334320, whole genome shotgun sequence.
ACCESSION   DUKB01000038 DUKB01000000
VERSION     DUKB01000038.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_334320"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1001)
                     /locus_tag="HA345_01480"
     CDS             complement(<1..1001)
                     /locus_tag="HA345_01480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HIH84059.1"
                     /translation="MAVRRIRAILLTLVLFLAPLAGCFGTDQEDPQFEPTHWLPPVEE
                     RFDMIYQADDVFSRVSWNGSYGIGDSLSVFVPVPEIDASDGGAGVTGGAEVHLGLWLP
                     IIEGCDWSSAELPVECQVPVIAEIGPYYDDGDVDALTPADRLGRFLIENFVPHGYGVA
                     QVSVFGTGESNHCMDLMGYDEQAGIKAAVDWLGSQAWSNGRVGAIGKSYDGSTPWNAA
                     ASGSEHLATIVPMSGLIGVHDLMWRNGSMEARGAIMHNGVYGSFGLDGDSGDIENACE
                     GYIEGYYAGPAAYMTGDNLGWTGSDYWEERHFLTGALDVYNGSIYIIHGMQDWNVDP"
     gene            1114..1539
                     /locus_tag="HA345_01485"
     CDS             1114..1539
                     /locus_tag="HA345_01485"
                     /inference="COORDINATES: protein motif:HMM:NF012436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84060.1"
                     /translation="MTMNSSGIIDALNGALAWELRAIAMYAHYSAYVSGIHRLQLSAH
                     FSEEVTESTTHAAAVRAAIVKLDGIATTDRADTEIIHTMDYTEMLKEAYKTEMKASET
                     YGQILPMIETLGDKELYDSLETIYFDEMRSVEELRMMLK"
     gene            complement(2212..>2830)
                     /locus_tag="HA345_01490"
     CDS             complement(2212..>2830)
                     /locus_tag="HA345_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84061.1"
                     /translation="IALGLGRPRGGLLHLKPDGDQLIDTHLDLGDSPVCCGTGQSEIL
                     LGHIDGGITGINIDGKPEPLPSITKETIECMVKDASRLLIGTSEGSAICYDNENISWS
                     IDLEAEIENICISNRERAWFSTWSGRSGLISLLDSDSGEIITHLTLSARLRDIAVHEG
                     FTVIGMDDGRLLVFENEMLARRIDSAPTGANNRSDLRDRLRALRK"
BASE COUNT          724 a          731 c          627 g          748 t
ORIGIN      
        1 tgggggtcaa cattccaatc ctgcatccca tggatgatgt aaatcgaacc gttgtataca
       61 tcaagagcac cagtaaggaa atggcgttcc tcccaataat ctgaaccggt ccaaccaagg
      121 ttatctccag tcatgtaagc tgctggtcct gcataatatc cttcgatata gccttcacag
      181 gcattttcga tatcgccact atcaccatca agaccgaaag acccgtacac accattgtgc
      241 atgattgcac ctcgtgcctc catgctacca tttcgccaca tcaaatcatg gactccaata
      301 agaccagaca ttgggacaat tgtagcgagg tgttcagatc ctgaagctgc agcattccaa
      361 ggtgtgctgc catcgtagga cttacctatt gcaccaacgc ggccgtttga ccatgcttgg
      421 gagccaagcc agtcaaccgc tgccttgatg cctgcctgtt catcgtaacc catcaaatcc
      481 atgcagtgat ttgattctcc ggtcccgaat acagatacct gggccacacc gtaaccatga
      541 ggaacgaaat tctcgatgag gaagcgccca agtcgatctg cgggtgtcaa cgcatcaaca
      601 tcgccatcat catagtaagg gccaatttct gctatgactg gtacctggca ttcaacaggt
      661 aattcggcag aactccaatc gcaaccctcg atgataggga gccaaagacc gagatggact
      721 tcagcaccac ctgtcactcc ggctcctcca tcagaggcat caatctcagg aactggaaca
      781 aagacggaga gagagtcacc gataccatac gaaccattcc atgaaacgcg tgagaacaca
      841 tcatcggctt ggtaaatcat atcgaaacgc tcctctactg gaggtagcca atgagttggt
      901 tcgaattgag ggtcttcttg atccgtacca aaacatcctg caagaggcgc aagaaataga
      961 acgagagtca ataggattgc tcgaatccgc ctgacagcca tgtttaacgg tcaagcccct
     1021 cgatttcaag cctaccggct gtaagaccca tgtaatatgg gtcaaaacag tatattccaa
     1081 tggtttattc gattccgtgt taagcgacaa ctgatgacaa tgaacagttc gggtattatc
     1141 gatgcgctca atggtgcact tgcttgggaa ttacgtgcta ttgcgatgta tgcgcactat
     1201 tctgcctatg tatcagggat tcatagacta caactttctg cacatttttc cgaagaagtc
     1261 actgaatcaa ctactcatgc tgctgctgtc cgagctgcaa ttgtaaaatt ggatggaata
     1321 gcaactacag atcgagccga tactgagatt atccatacaa tggattacac tgagatgctg
     1381 aaagaggctt acaaaactga aatgaaagca agtgaaacct atggacaaat cctacctatg
     1441 attgaaacgt taggtgacaa agagctctac gattcattgg aaaccatcta cttcgatgaa
     1501 atgcgttcgg ttgaagagct ccgaatgatg ttgaagtaga cactagagat cctggtaatg
     1561 aataccaatt ttggcgattc gacgaatctt ttgaaaacgc ctatttgagg gtaatcaata
     1621 ccacaatgat tgattagcag aaggatgagg attccatcgt ccaagaggac aaggtgggag
     1681 cgagcagagg gggttccgtc gggtggactt cgccccctct gctcaactcc gcggttgact
     1741 cctgttcctc tccggttgcc cttcgattcc cagtcgtctt tccagtcgat tggttccgta
     1801 gttacctact tctcctctct ctctcgttca ttcccttcgg gtttcccctc tgttcattcc
     1861 cggatactgg atttggatcg agccccctcc gcattgctgc gtttggttgc gttctcctcg
     1921 ttctgccgaa gcttcccgat tcgttccagc gtcggtttcc ctttgctgtc gtctccaggt
     1981 ctctcatcgt aatgatcgac cttccgtcca ctcgttgccg agtgatcgga accgctcagg
     2041 tttgcggttc cggaccggag tccccgcaac aggttgcccc gtcacgccac tcccccggag
     2101 cggtaactta gcataagtaa gggacgtcta ttaacttttg caagaaaatg gcacttttct
     2161 taggaaatta acgttctagg acccctattt ccgatgcaga tttgttatat tctattttct
     2221 taacgcgcgg agtcgatctc tcaaatcaga acgattgttt gcccctgttg gagccgaatc
     2281 tattcgtctt gcaagcatct cgttctcgaa tacgagtaag cgcccatcgt ccattccgat
     2341 tacagtaaac ccctcgtgaa cggcgatgtc tctgagtcgt gctgataatg tgagatgagt
     2401 gattatttct ccactatccg aatctaaaag tgaaattagg ccacttcttc ctgaccaagt
     2461 actaaaccag gcacgctctc gattagagat gcaaatattc tcgatttcgg cttctaaatc
     2521 aatagaccaa gagatgtttt cattgtcata gcaaatagca ctcccttccg atgtcccgat
     2581 taagaggcgg gatgcgtcct tgaccatgca ttcgattgtt tccttcgtaa tcgatgggag
     2641 aggttctggt ttgccatcta tgttgatccc tgtaataccg ccatcgatgt gtcctagtag
     2701 aatctcgctc tgaccagtgc cacaacatac gggtgaatcg cctaaatcaa gatgggtgtc
     2761 gattaattga tctccatctg gcttcagatg cagtagcccc cctctaggtc gtccgagacc
     2821 cagggcgatt
//
LOCUS       DUKB01000039            3990 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_146226, whole genome shotgun sequence.
ACCESSION   DUKB01000039 DUKB01000000
VERSION     DUKB01000039.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3990)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3990)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_146226"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..675)
                     /locus_tag="HA345_01495"
     CDS             complement(<1..675)
                     /locus_tag="HA345_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84062.1"
                     /translation="MNDARHSRVSAILLVVLVLTMLAGSVTAKPNTMEIPEGEGTSIF
                     HPLNRNLFLQNETSMDLIYPLDSGQPPAFGFNRLTNQLLSVNSAPVEHATKFEGNLTV
                     RLFAGLSLDGPTCRLTNPVPGTPADAQTQFTVRVLAGGAQVFENTTKRVAMEFDWTQP
                     EEFVTSGWNVNFTLSQGDVITLEIDVEHNCIIDGQLYFDRYDTASRIELNGQTLTPEL
                     DLKVDQN"
     gene            complement(720..1469)
                     /locus_tag="HA345_01500"
     CDS             complement(720..1469)
                     /locus_tag="HA345_01500"
                     /inference="COORDINATES: protein motif:HMM:NF014049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF92 domain-containing protein"
                     /protein_id="HIH84063.1"
                     /translation="MIEALTDSNGLVTMGLVLFLGSIAGARGFLDKSGILAAGVLGII
                     VGIGGHWTWLAILLIFLVTGSLATRFSYDEKALMGLAEARDGARNWTNVIANGGAPGM
                     IALLALLTGEPVMLAAPFVAAVAVASSDTMASEFGVLDPRVRMIINGRIVPAGTNGGI
                     SPTGQVAALGGSLLIAMTAVPLIGFFGSGFSDQAWRVFLVIVLIGWFGCQIDSILGAM
                     FENQGLMTKGQVNLASTLLGSLATYVLLLLA"
     gene            complement(1516..2976)
                     /locus_tag="HA345_01505"
     CDS             complement(1516..2976)
                     /locus_tag="HA345_01505"
                     /inference="COORDINATES: protein motif:HMM:NF024760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HIH84064.1"
                     /translation="MPVTRITKPQEDLRIGRISKPWSVYGRTLGIVILAFLLVQFLTI
                     GVMGVIEGEPYLAACGIIFSVPFLALIAHIQRPKIVDVRVAIHDPNGGHYHAIGPNET
                     LWTPEPTRFRRHIVRDASSLDIPRSRSLWAIFAVLITTSLTISIGLWTGIATEILFLV
                     AIIIGIPFFILGFSIPVMAWWAISKERLGILTRQRDAESWLFLGMMAGFPAIVINSFA
                     FPLIASILGFDVSNQEAMLNLTAVISAPIGEEICKGLAVALFMHQMDGGKRGFQIGFT
                     VGLGFALIENLQYILLSFEAGFTGFALTVLIRGIGSIPGHAFWTGLTGYAIGSLAGER
                     REAGESEDEKPDDPSQTWLLFDPNTGQEIHPREVTPTESTTLTSTFHQTLEARVQQIA
                     IPKMEEITGGIRPPSSIGIALMCAILGHGLWNGTAVFVPTIVLHLGGSEGHAILASIC
                     ATLLLVIGVLLLGDALMRGVNDENKGKEGTTIPVLN"
     gene            complement(3132..3629)
                     /locus_tag="HA345_01510"
     CDS             complement(3132..3629)
                     /locus_tag="HA345_01510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 domain-containing protein"
                     /protein_id="HIH84065.1"
                     /translation="MTSAQQYYDGLVQQGHDAAMALSYTQQHYPDFTAVMPVPEPMPQ
                     PMAVAPAAPVVANVTPVAPSTGGWAIQTASFGLFFTKILAFLLTAITVGFGYPWAKTM
                     VFSKWARNVRIDGRPIRYTGTGMGLFGIWVKVFLLTIITIGIYYLFWGRKAVPKYVDA
                     HLEWA"
BASE COUNT         1005 a          974 c          992 g         1019 t
ORIGIN      
        1 attctgatcc acttttaggt ccagttcagg ggtcaacgtc tgcccattca attcgattct
       61 ggatgcggta tcatatcggt caaagtagag ttgtccatcg attatacagt tatgttcgac
      121 atcaatctcg agcgtgatga cgtctccttg gcttaatgtg aagttcacat tccaacctga
      181 ggtgacgaac tcctcaggtt gcgtccagtc gaactccatt gcaacccgtt tcgtcgtgtt
      241 ttcgaatacc tgtgctccgc ccgcaaggac tcggactgtg aactgtgtct gcgcatcggc
      301 aggagtgccc ggaactggat tagtcagtcg acaggttggt ccatcgaggc ttaatcctgc
      361 gaatagacgg acagttaggt ttccttcgaa ctttgtcgca tgttcgacag gagcggaatt
      421 tacgctcaga agctgattcg tcagtcggtt aaatccgaag gcaggaggtt ggcccgagtc
      481 cagcgggtag atgagatcca tcgaggtctc gttttgtagg aacaggtttc ggttaagtgg
      541 gtggaagata cttgtccctt cgccttccgg gatttccatt gtgtttggct tggcggtgac
      601 ggaacctgca agcatagtta gaacgagcac gacgagcaga atcgccgata cacgagagtg
      661 tctcgcgtcg ttcatgcacc gttcatgtgg accgagttgt tcaatccctc gcagaattat
      721 caggcgagga ggagaagcac gtaggttgct aacgagccaa gaagagtcga tgcgagattg
      781 acctgtccct tggtcatcaa gccttggttt tcgaacatgg cgccaaggat tgaatcgatc
      841 tgacaaccaa accatcctat cagaactatc acgaggaaaa ctctccatgc ctggtcggag
      901 aatccactcc cgaagaatcc gattagtggg actgcagtca ttgcaatcag aagtgatccc
      961 ccaagtgctg caacttgacc agtaggtgaa atccctccgt tagtccccgc aggtacgatg
     1021 cgaccgttga tgatcatacg tacgcgtggg tctaggactc caaactctga agccatcgtg
     1081 tctgaggatg cgacagcaac tgctgcaaca aagggtgctg ctaacattac tggctcacct
     1141 gtaagtaaag caagtagggc aatcattccc ggagcgcctc cgtttgcaat cacattagtc
     1201 cagtttctcg ctccatccct tgcttcagcc agtcccatca acgctttctc atcatatgag
     1261 aatcgggttg caagagaacc ggttacaaga aaaattagca atatggcgag ccaagtccaa
     1321 tggccgccaa taccaacgat gatgccgaga acgcctgctg caagaatacc actcttgtcg
     1381 agaaaaccgc gtgctccggc gatgctgccg aggaatagga ctaggcccat agtcacaagg
     1441 ccattagagt ccgtgagcgc ctcaatcatg tgtcctcgac atgaacggtt cccgttagcc
     1501 gcatcaagcc atcgctcaat taaggactgg aattgtggtt ccttccttac ctttgttttc
     1561 gtcgtttaca cccctcatca gtgcatctcc aaggagtaga accccgatca caagtaggag
     1621 tgtcgcacat atactcgcaa ggatagcgtg accttctgag ccaccaagat gcaggactat
     1681 cgttggcacg aatacagctg ttccgttcca taaaccgtga ccaagtatcg cacacattag
     1741 tgcgattcca atactcgatg gtggccgaat cccaccagta atttcctcca tctttggtat
     1801 ggcgatttgt tgcacacgcg cctccaatgt ctggtggaag gtggaagtga gtgtagttga
     1861 ttcagtagga gttacttcac gagggtgaat ttcctgccct gtgttcggat caaatagcaa
     1921 ccatgtctgg ctagggtcat ctggtttttc atcttcggat tctccggctt cgcgccgttc
     1981 ccctgcaagg gaaccgatgg cataaccagt cagcccagtc cagaatgcat gtccggggat
     2041 agatccgatt cctctaatca gaactgtgag ggcgaatcca gtgaatccgg cttcaaatga
     2101 gagtagaata tactgtaggt tttcgatgag tgcgaagcct aaacccaccg tgaatccaat
     2161 ctgaaatcct cgcttacctc catccatttg gtgcatgaat agggctacgg caaggccctt
     2221 acagatctct tctccgattg gtgcactgat gactgcagtg aggttcagca ttgcttcttg
     2281 atttgagaca tcgaatccaa ggatactggc tatcaggggg aatgcgaaac tattgatcac
     2341 aattgcaggg aatccagcca tcattcctag aaagagccag gattctgcat cgcgttgtcg
     2401 agtcaaaatt ccaagtcgtt ccttcgagat ggcccaccat gccattactg gaattgagaa
     2461 accaagtatg aagaagggaa ttccgatgat gattgcaact aagaatagaa tttccgtggc
     2521 gatacctgtc cagagtccaa tagatattgt cagcgaggtg gtgattagga ctgcgaagat
     2581 tgcccaaagt gatctagatc gagggatgtc caatgaagag gcatctctca caatgtggcg
     2641 ccgaaatcgt gttggctcag gagtccataa tgtctcattg ggtccaatgg catgataatg
     2701 tcctccattg gggtcatgga ttgcgacgcg tacatcgaca attttcggcc tttggatatg
     2761 tgcgattaat gcgaggaaag ggacgctgaa aatgattcca caagcggcga gatacggttc
     2821 accttctatc acgcccatca ccccaattgt caggaattgg acgaggagga aggcgagtat
     2881 gacgatgcca agcgttcgcc cgtatactga ccaaggcttg gaaatacgac caattcgcag
     2941 atcttcttgg ggcttggtaa tcctcgttac aggcatgggc ctgtatatcc tgccatcagg
     3001 gccctggatg ggttgcatca attgaaactc ctgatgccgc tcagtccgcc catcaatccg
     3061 tacggctgag gaccttcatc atcgcggcaa gcccctctca gggttgccgg ttcatggctc
     3121 tgacgcttag attaggccca ttcaagatgt gcatctacat acttcggtac ggctttcctg
     3181 ccccagaata ggtagtaaat tccgatcgtg attattgtca aaagaaatac cttgacccag
     3241 atgccaaaga gccccatccc ggtaccagtg tatcgaattg gtcgcccgtc tattcggacg
     3301 tttctcgccc acttgctgaa taccattgtc ttcgcccaag gatatccaaa tccaacggta
     3361 attgccgtta ataggaaggc taagatcttg gtgaagaata gtccaaagct tgcagtttga
     3421 attgcccacc cgccggtaga gggtgcaact ggtgtcacat tggcaaccac cggtgcagcg
     3481 ggtgctacgg ccatcggttg aggcatgggt tcaggtacag gcattactgc agtgaaatct
     3541 gggtaatgct gttgcgtgta cgagagtgcc atcgccgcat catggccttg ttggactaat
     3601 ccgtcatagt actgttgtgc gctagtcatg agttcaggtt agggctacat cgtatagcag
     3661 ttttccaccc tatccctgat gtcgaaagtg gcgattagag tccctcatta ttttcgttac
     3721 gagccgagaa atattcagtc atatctacac acgcaagcat cttctttact ctctactaag
     3781 tattcgtttg aatcgtctta gggcatttaa ttattcaaat gtataggata tgagtgttat
     3841 agtaatttat caatcaattt actagcgaat cattgataca cttgtttgct agggcgagtt
     3901 aacatggacg actacagcaa actcgagtac atatggttag atggatacga acctacccag
     3961 aacatgcgta gtaaaacaat ggtcaggaaa
//
LOCUS       DUKB01000040           12018 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_31060, whole genome shotgun sequence.
ACCESSION   DUKB01000040 DUKB01000000
VERSION     DUKB01000040.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12018)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12018)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12018
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_31060"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1819)
                     /locus_tag="HA345_01515"
     CDS             complement(<1..1819)
                     /locus_tag="HA345_01515"
                     /inference="COORDINATES: protein motif:HMM:NF012615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84066.1"
                     /translation="MRPVGEGMDWGAHREQWIELGFDSVAINALFGPEPNSESVASAE
                     LRLQQASDLIELMDNAPATMKEIPKAMQAHLLNHPGDVDEIRDRYIAHLREISPWTLA
                     ANRSRELWSMEGRSVELQAWMRRLSTLEKGGGEEVVALVQAIEKVAPRDSVRKCIEAL
                     EVKQRAREEVLQNLVGILQQKGWSIQFSKGANLIQRFEEANQWLRLEDRLEEVEEIVG
                     TFARRRASKSEYLMMQIQAIRKDPKVDDVIQLEEAVVKEISDIDEQNTIIQNRIIHWK
                     DLGLLLPYSDPLSVEDFASIDGNLERLEEAWKSALDSSQHLRNLGVPLNFDIIDRGDC
                     SNELIKEIQTWEQEISHNEREASTQISRWESLGLDVQEFMRPNSRDLDVQVQHRVTAG
                     SLAEELLASLDSLDITMDKERIESMRAVIQLRWGIEGELQDVATEISRLSRRQAKHRS
                     MLISRAKILKMDVQGNEEWTLVDFEGYLARAEMARDRQNERQEIEIRRKEILEMKHLE
                     EKEKAVIEVTETIHSSPEEDLLKDTWIEKKAADGRFFYYNGRTKESTWKKPRNQPVNE
                     RRPVEKQDEAENEGSGGDTIQEIRVEEDSKVPTNILKETH"
     gene            1823..4231
                     /locus_tag="HA345_01520"
     CDS             1823..4231
                     /locus_tag="HA345_01520"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024824.1,HMM:NF025910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH84067.1"
                     /translation="MSWAFKHLSIQVESSQTLPFWQIAEVLRIGIFTIFCREAAKCVL
                     IRMQTMEPLTSALIALLAFTIGGATYVIQKMNQRLLEMEETSNESSVAIEQDVSILNE
                     ALHGLLDETDASRQLDGSNALLRAKRALNTLNPESDNSASEVASHLIPILDLLLLEDT
                     ISEAYRRLDGNRRDLLRELVSAASTHSLTPAMMFGNNDRLLRTFAEAALILGDRSIAI
                     AALIESERLAPRNESTLRLLVKLARESGDDASLKARLDRLLEIHPDDEALLRERAHVL
                     SRMGDLSAERDSRRLEALGVQTASDRALLAGLRERAGDPATALEEAEASLKEDPSNVE
                     ALFLKARLHHIRGENTRSLQAVEALLDLDRQNGPGWTLRARLLELEEERLDDALKSII
                     HAVAIGEPEWVLKADLLMRSDRLEDALESLYAVLEADPANGIVRAYLSLLKMSEGEIE
                     ASTTLLNDAPQSAWDAADMHIQRGRLTLYAADRSRDGTGVHDRGLIRGALSFFDSALE
                     RDRENALAWLGKGRTQRQLGEILEAEDCLVRATRLDPDETMISVELALLRIDQDRLQD
                     AERIIYEAESALNDTNVLHYVKGLIAAGRGNNDEARRRFDDVLVRDPSHVRARLNRAT
                     IAMILGEHPVALEDSERLLDAHPELDLARILRAEALMGLKQWDWAEIALQEILDRKPQ
                     HVPALISMGTTLCALGRAEEALSPLDEAIRLNPDNPDAWYMRAQFYIEQGTLSAALSD
                     FEAAIRVDARHMDSLLHAAAILHEIGPSDKAEVAWRRILDVEPTHRLARTRLNEIETY
                     SIET"
     gene            4272..4820
                     /locus_tag="HA345_01525"
     CDS             4272..4820
                     /locus_tag="HA345_01525"
                     /inference="COORDINATES: protein motif:HMM:NF020123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HIH84068.1"
                     /translation="MTSESGLEPGDQAVDFTLKNANLNAGPDTMKLADVVGDSGGIIV
                     FTCNHCPYVIASESRIENMATRCRSAGIGFVGINSNDPITYANDDWDHMVDRAESMSY
                     PYLHDSEQTIAHAYGAQRTPEFYLLDGSSKIIYRGRMDDSPRDPNSASTNELDDAFNA
                     LITGGIVQAPRTESIGCSVKWK"
     gene            complement(4925..5143)
                     /locus_tag="HA345_01530"
     CDS             complement(4925..5143)
                     /locus_tag="HA345_01530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84069.1"
                     /translation="MSNITLKILDLTGDTVLADLDADAVRAEVNALDGERWVFVDGRM
                     VRRDNLANIDIAENATVLVTRQMVAGSV"
     gene            complement(5239..6447)
                     /locus_tag="HA345_01535"
     CDS             complement(5239..6447)
                     /locus_tag="HA345_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HIH84070.1"
                     /translation="MDRETDDDLNEEQGVPSNEETACPECGGTEFTEDANRGEIVCVM
                     DGVVIRSNVLEDSDVFQGTSNIENVGRDLGNRGRDIYARSDKNRLGSCPYATMKGGIN
                     GSASSATRAYHRRILTIQRNHLAERPTLRRNAQRIIESSRMPGEQSVKDTANRILVET
                     HDKNSERRHSSDRELIEKMKGANDGEKPSYPLNQVRHLQALTKTEDEEKNTIRNNKGD
                     SATVAAIAAMSIAARMLGKSFSITSVAKEYGLDAKVIHTEKKNIQSYLKAILSAERKL
                     NRTSSILCFDASQIMGRPRWTESEILAVLEAVGPSMESIHGAKEGRRLIRLLGDLLRV
                     ASQDRGLSGENLRAVAGSFCDKMNKYSGRQRVFKTIGSALSVSRNRVRTVTDKFGGLI
                     NRLVASVIES"
     gene            complement(6584..7210)
                     /locus_tag="HA345_01540"
     CDS             complement(6584..7210)
                     /locus_tag="HA345_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84071.1"
                     /translation="MVNNLPVEIERKHLAHLPGNIGNDATYIRQWYLPVEMINIDDGL
                     ALMGRRIPQEPHQEEWMSGIIKAIKQSDPTIRVRISDGSAILCIKGKTVGIERPEFEW
                     VLSDSSWFEQQLSTSEWPFVEKQRWRIIAEDNHVWELDLFMGANDGLVLAEIELTDAN
                     EHYTKPDWVGDDVSGDWRLSNQQLANNPFASWESSMRVSLESRFKYPD"
     gene            complement(7462..7962)
                     /locus_tag="HA345_01545"
     CDS             complement(7462..7962)
                     /locus_tag="HA345_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84072.1"
                     /translation="MKNMIDSEIDSNRLCQEIKSGEYQEEDIVNSLRILGIQDRWDEV
                     WNVSHALGVEISWIQDAEGAVFVDLGSSGEVRLSAPIGAVLPFRLWIHTHPWTAYWSF
                     TDRTALRNFAGLLEVAIVLGNDHWKRSRCRLTMGQTLPDSIEDPLNMWTDEEIQHYPV
                     VPEVMV"
     gene            complement(7959..8825)
                     /locus_tag="HA345_01550"
     CDS             complement(7959..8825)
                     /locus_tag="HA345_01550"
                     /inference="COORDINATES: protein motif:HMM:NF013094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84073.1"
                     /translation="MDTKQQPLNISIIGAGGIGSNTCLLLVNALRNGVIAKQLWGIHF
                     HLYDGDKVEEDNLIHQRFTPNQIGMLKVDALAETFADVHDAVRLTPHGINLREATVLE
                     DADIVIVAVDRPEPRRIVHSLEGKEWYDSRCMGDITLLLTDRSDPAMVDALTPEHAPA
                     SCQPEGAIESGAIQFGFANAAVHLADAIMRSLLRRCGHETEFPNSICDSITKGRIDIF
                     GTPVEPVMKAAPQATEPWSDEDDRILLDGLDHNGRDLDEISKKIGRSTNALFHRLRRL
                     LERENVSVEVGE"
     gene            8903..9637
                     /locus_tag="HA345_01555"
     CDS             8903..9637
                     /locus_tag="HA345_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84074.1"
                     /translation="MDEDDHSSLDAENAIWLTSMIREELDLWGPLKEVSAIRGWGRHP
                     RILLHDLNGLFGHAVLDRLGSSIELRTVVLDPRIRGQGRSHELVEQAISRWYQDALLH
                     RVSPPLEPSSRRPLISWTRSAGLAAAYHRAGFYLVQSERRWSRLWLFRSTLATLPLRL
                     QISIVLNRMLRGISMLFQDPVRIGHQIRHLREYHLFIFDPKSSLQMPSRAHPMSEMTA
                     VTGRQLIEIEDSQVQAFVNWDATEEG"
     gene            9664..10098
                     /locus_tag="HA345_01560"
     CDS             9664..10098
                     /locus_tag="HA345_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84075.1"
                     /translation="MAVDPFEPIDIRIEIIIGTLLVLNTLPFGFGFAGPWEDAGFTRG
                     IGGLIGCYLFYRAWFATTFGFHGLIPALHLWSNPSRSSSQLTLIGVATLGLGWIIGGP
                     LSSLFADPTGLIINLFGCLMLLVAGYAWLVFDGGLKDADEEE"
     gene            complement(10102..10635)
                     /locus_tag="HA345_01565"
     CDS             complement(10102..10635)
                     /locus_tag="HA345_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84076.1"
                     /translation="MKIGWIVSGVIMILVTVPAGIVGYSGSGSLDSDVPACDSGILGL
                     NVCDKVVMLEDGVNIPETAATLLTADVSVDWGSQNVWIAIVPASDEEHCSSGNDGYLV
                     CDRDSLTYLAGGPYSGGAFDWALEGGDIRFVAGNSMEAASESVTIEYSYNARLSALLG
                     SILALVGLVQILIGWKF"
     gene            10860..>12018
                     /locus_tag="HA345_01570"
     CDS             10860..>12018
                     /locus_tag="HA345_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84077.1"
                     /translation="MVFSTTLALLPVAADGGEIDMGIFAPAEDRTPIQSTYQGGNQPG
                     GAPVPGALDQSRFNHPALSDPTWNDILAGTGKVGDISALQLRSEAYSFLLEETNLGDH
                     DNDGIGDLDDLDDDNDGIYDLIERFDGCFGTDPLDHDNDGVVDEYDYDDDNDGILEGP
                     IDYTQGADPLNVSTDRYVEPSTIHPWTLTAVGPGYMVDQNPLDRDNDGVNDEDPDGSG
                     RESFDEDDDNDGRLDQFKWPCDFDYDGIQDYFDDDDDGDGTMDYMDRDPYNSSITQTM
                     PAAAAASSSDELVYDAAAPWTFTSYALYSFSVDYVTLESQYHPNSPAFTSIVDGDLDG
                     DGIPNFLDPDNDGDGFPDSADTDDDNDGILDMFDPDDDNDGIKDVCLRIDTN"
BASE COUNT         2976 a         2984 c         2740 g         3318 t
ORIGIN      
        1 gatgagtttc tttcaggata tttgttggaa ctttagagtc ctcttcaacc ctgatttctt
       61 ggattgtgtc gcccccgctt ccttcgttct ctgcctcatc ttgtttctca acgggtcttc
      121 tttcattcac tggctgattc cgcggcttct tccaagtaga ttccttggtt cggccattat
      181 agtagaagaa cctaccatca gcagccttct tctctatcca agtatccttg agcaggtctt
      241 cttcaggcga tgaatgaatc gtttctgtaa cttcaattac ggccttttcc ttttcttcga
      301 gatgcttcat ctctaggatt tcttttcgtc gaatctcgat ttcttgacgt tcattctgac
      361 gatccctcgc catttccgct ctcgctaaat atccttcaaa atcaactaat gtccattctt
      421 cgtttccttg gacatccatc ttgagaatct tcgcccttga aatcagcata gagcgatgct
      481 tcgcttggcg gcgactgagg cggctaattt ctgtagcgac atcttggagt tcaccttcaa
      541 taccccatct taattggata acagcacgca tgctttcaat tcgttcttta tccatggtta
      601 tatcgagaga atctaaggac gcaaggagct cttctgctag agatccagca gttactctat
      661 gttgtacctg aacatcaagg tctcgagaat taggcctcat gaattcctga acatcaaggc
      721 ccaaagattc ccatctagag atttgtgtac tcgcctctct ttcattatgt gaaatttctt
      781 gctcccatgt ttgaatctcc ttaatcagtt cattcgaaca atcgccacgg tcaataatat
      841 caaagttcag aggtacgccg agattgcgaa gatgttgaga ggaatctaag gcactcttcc
      901 atgcttcctc taatcgttcg agattaccat caattgaagc gaaatcctcc acagatagag
      961 ggtcactgta aggtagcaag agccccaaat ccttccagtg gattatccta ttctggatga
     1021 tagtattctg ttcatcaata tcacttattt ctttgacaac agcctcttcc agttgtatca
     1081 catcatccac ttttgggtcc ttccggattg cttgaatttg catcattaga tactcagatt
     1141 tcgatgcacg cctcctcgca aaagttccga ctatctcctc cacttcctca agccggtctt
     1201 cgagacggag ccattgattt gcttcttcaa agcgttggat tagattagct cccttactaa
     1261 actgaatact ccagcccttc tgttgaagga ttcccacgag attttgtagg acctcttcac
     1321 gcgccctttg ttttacttcg agggcctcga tacatttccg gactgaatct cttggtgcga
     1381 ctttctcaat ggcttgaacg agagcaacaa cctcttctcc ccctcctttt tccaaggtgc
     1441 tcaatcgtct catccaagct tgaagctcga ccgaacgccc ctccattgac caaagttctc
     1501 gggaacggtt tgcagcgaga gtccaagggg aaatctcccg tagatgagca atgtaacggt
     1561 ctcggatttc atcgacatct cctggatgat tcagtagatg tgcttgcatt gctttcggaa
     1621 tttccttcat ggttgctgga gcattatcca ttagttcaat gaggtcgctg gcttgttgga
     1681 gccgcaactc tgctgaagcg acagattcgc tgttaggctc agggccaaag agcgcattga
     1741 tagcaacaga atcgaagcct aattcgatcc actgttctcg atgagcgccc cagtccattc
     1801 cttcaccgac aggcctcatt cggtgtcatg ggccttcaag catctgtcga ttcaggttga
     1861 aagtagtcaa acactacctt tctggcagat tgccgaagtc cttcgaatcg gcatcttcac
     1921 tatattctgt agggaagcgg ctaagtgtgt attgattcgc atgcaaacga tggagcctct
     1981 cacgagtgca ttgattgccc ttctcgcctt caccatagga ggtgccactt atgttattca
     2041 gaaaatgaat cagcgccttc ttgaaatgga ggaaacctcg aatgaatcat ctgtagcgat
     2101 tgaacaggat gtttcaattc tcaatgaggc tctacatggt ttactggatg agacggatgc
     2161 aagccgtcag ttggatggat ctaacgccct tctacgggcg aagcgggctt tgaatacatt
     2221 gaaccctgaa tctgataact ctgcttcaga agtagcctct catttgattc ccattcttga
     2281 tctcctcctt cttgaggata caatttcgga agcatatcgt cgacttgatg gaaatcgaag
     2341 agatcttctt cgtgaacttg tatcagcagc atcgacccat tcacttactc cagcgatgat
     2401 gttcgggaac aatgatcgct tgcttcgaac attcgcagag gcagctctaa tcctaggaga
     2461 ccgtagcata gccattgcag cgttaattga atctgaacgt ttggcgccac gtaacgaatc
     2521 tacgctcagg cttcttgtca aactcgcacg agaaagtggc gatgacgctt cattgaaggc
     2581 ccgcctcgat agattactgg aaattcatcc agacgatgag gcacttctcc gggagcgcgc
     2641 tcatgttcta tcaaggatgg gcgatctttc tgccgaacgc gactcccgac gtcttgaggc
     2701 gcttggtgtt caaactgctt ctgatcgagc ccttttggca ggcttacgcg agcgtgctgg
     2761 cgaccctgca acagcgcttg aagaggcaga agcctctctc aaagaggatc catcgaatgt
     2821 tgaagctctc ttcctgaagg cccgcctcca ccatatccgt ggtgaaaaca cacgctcctt
     2881 gcaagcagtc gaagcattgc tggacctaga tcgacagaat ggacctggtt ggacattgag
     2941 ggcccgtctt cttgaactcg aagaagaacg cctagatgat gcgctgaagt cgattatcca
     3001 cgcggtagct atcggtgagc cagaatgggt gttaaaggca gatcttttga tgcgttcaga
     3061 ccgtttagaa gatgcacttg aatctctcta tgctgttctt gaggcagacc ctgcgaacgg
     3121 aattgttcgc gcatatcttt ccttgttgaa gatgagtgaa ggtgagattg aagcatcaac
     3181 aactcttctc aatgatgcac ctcaatctgc atgggatgcg gcagatatgc acattcaacg
     3241 gggtagattg accttgtatg cagccgacag gtctagagat ggcacaggag tgcatgatag
     3301 aggcctcatt cgcggggctc tctccttctt tgattcagca ctagagcgag atcgagagaa
     3361 tgccctagca tggctaggca aaggccgaac tcaacgccaa cttggagaaa tcctcgaagc
     3421 cgaagattgt cttgttcgtg caactcgatt agatccagac gagactatga tatcggttga
     3481 actcgctctt cttcggatag atcaagatag gttacaggat gcagaacgca taatctacga
     3541 ggcagaatcc gctctcaatg atacgaacgt tctccattat gtgaagggct taattgctgc
     3601 aggaagaggc aataacgacg aagcacgaag aagattcgat gatgtccttg ttcgggaccc
     3661 atcacacgtc cgtgcgcgat tgaatcgtgc gacaatagcg atgattctag gtgagcaccc
     3721 tgtcgccctt gaagatagtg aacgtttact ggatgcacat ccagaactcg atttagcacg
     3781 cattctcagg gccgaggccc tgatgggtct gaagcagtgg gattgggctg agattgcact
     3841 acaggagatt cttgaccgga agcctcagca tgttccagcg ttgatttcca tgggtacaac
     3901 tctctgtgca ttaggtcggg ctgaggaagc cctttctcca ctagatgaag caattcgttt
     3961 gaatccagat aatccagatg catggtacat gcgtgctcaa ttttacattg agcaaggcac
     4021 attgtctgct gctctttcag attttgaagc ggcgattaga gttgatgcac ggcatatgga
     4081 ttctcttctc catgccgcag caattctcca tgagattggc ccgtcggata aggctgaggt
     4141 ggcttggcgt cgtatacttg atgttgagcc gacccaccgt ctagcgagaa ccagactcaa
     4201 tgagattgag acctattcaa tcgagacgtg actgccgtca cattcaatga cgccattcta
     4261 ttcgtcagtt catgacatcc gaatcaggac tagaacctgg cgatcaagca gtagatttca
     4321 ctctgaagaa cgccaatttg aatgctggcc ccgataccat gaaactcgcc gatgtcgttg
     4381 gtgattcagg aggcatcatt gtattcactt gcaatcattg cccctatgtc attgcatccg
     4441 agtcacgtat tgagaatatg gcgactcgat gcaggtcagc aggtattggt tttgtaggga
     4501 ttaattccaa tgatccaatt acctatgcta acgatgattg ggaccacatg gttgatcgtg
     4561 ccgaatctat gagctatcca tacctccatg actctgaaca gacaattgct catgcttatg
     4621 gtgctcagag gacacctgaa ttctatcttc ttgatggatc atccaaaatc atctatcgtg
     4681 gtagaatgga tgattctcct cgagatccaa actcagcctc taccaatgag cttgatgatg
     4741 cattcaatgc cctcattaca ggcggtattg tacaggcacc tcggactgag tcgattggtt
     4801 gctcagtcaa gtggaagtag tgaagattcg acccactgga aggttcggta aaacgatcca
     4861 gaaggtcggg ggttacggaa taaatccgtt cagggccctt agggcagtgg gtttagtctg
     4921 atgttcagac cgatcctgcg accatctggc gggtcacgag aaccgtagcg ttctctgcaa
     4981 tgtcgatgtt tgcaaggtta tcgcgtcgga ccatacggcc gtccacgaaa acccagcgct
     5041 cgccatccag agcatttacc tcagcgcgga cagcatccgc atcgaggtcc gctaggaccg
     5101 tgtcgccagt gaggtcgagg atcttcagag taatgttgct cattcgatct tcctccattg
     5161 ttgttgacgt cgttcagggt gcattcgttt agcgtctttg agacaagaga catttggtgc
     5221 ttacagtata tcaatcaatc aagattcgat gacactggca acaagacgat tgatgagacc
     5281 accgaacttg tcagttacag ttctgacccg gttgcggctc acactaagtg cagaaccaat
     5341 cgtcttgaac acacgctgtc ggccactgta cttgttcatt ttatcacaga aagagccggc
     5401 aaccgccctt aggttctcac ccgagaggcc acgatcttga gaagcgaccc gtagaaggtc
     5461 accgagtagg cgaatgagcc tccttccttc cttggctcca tggatactct ccatagaggg
     5521 gccaacggct tctagtacgg ctaaaatctc ggattcagtc caacgtggtc gacccattat
     5581 ttgagaagcg tcgaaacaaa gaatactcga tgttctgttg agttttcttt ctgcagacaa
     5641 gatagccttg agataactct ggatgttctt cttttccgta tggataactt tggcatccag
     5701 cccatactcc tttgcgacac tcgtaattga gaacgacttg ccaagcatgc gtgcagcgat
     5761 agacattgca gcgatggctg caacagttgc cgaatcgccc ttgttgttac gaatagtatt
     5821 tttctcttca tcctctgtct ttgttagagc ttgtaagtga cggacttgat taaggggata
     5881 ggagggcttc tcgccatcat tcgcaccctt catcttctcg ataagttctc tatcactgga
     5941 atgtcgacgt tcagaattct tatcatgggt ctcgactagg atacggttcg cagtatcctt
     6001 cacagattgt tcgccaggca tccgagaact ttcgatgatg cgttgtgcat tacgtcgtaa
     6061 agtggggcgt tcagctaagt ggttgcgttg aatagttagg attcgacgat ggtatgcgcg
     6121 cgtggcagaa gatgcgcttc cgttgatacc acccttcata gttgcgtatg ggcagctacc
     6181 aagacgattc ttatcacttc gagcatagat atctcgccca cgattaccta gatcccgtcc
     6241 aacgttctcg atgtttgacg ttccttggaa aacatcgcta tcttcaagaa cattcgaacg
     6301 aataacgaca ccgtccatga cacatacaat ttcaccacgg ttcgcgtcct ctgtaaattc
     6361 cgttccacca cattctggac aggctgtttc ttcgttactt ggaacaccct gttcctcatt
     6421 caaatcgtcg tcggtttctc tatccatatg attcactccc tgcgcggact ctagtatcta
     6481 ttgcccgtag gtattaaaca ttatgtcaaa aactacaatc aaagaacaca atttaacata
     6541 aattgcacac ttcaagatgt tatagcgcaa acaagtgtgc ttgtcaatca gggtatttga
     6601 atcgggactc tagagaaacc cgcatcgatg actcccaact tgcaaacgga ttgttagcta
     6661 attgttggtt ggagagacgc caatcgccac tcacatcatc tcctacccag tcaggcttag
     6721 tgtagtgttc gtttgcatca gttaactcaa tctcggcaag gacaagccca tcatttgctc
     6781 ccatgaataa atcaagctcc caaacatgat tatcttctgc aataattctc catcgctgtt
     6841 tttccacgaa tggccattcc gaagttgaca actgctgttc aaaccaagaa gaatccgaaa
     6901 gaacccattc aaactcaggc cgttcaattc caaccgtttt ccccttgata cagagaattg
     6961 cagaaccatc agaaattcgt acacgtatcg tcggatctga ttgtttaatt gccttaataa
     7021 tgccactcat ccattcttcc tggtgtggct cttggggaat tcgtctaccc atgagggcaa
     7081 gcccatcatc aatgttaatc atctccacag gaagatacca ttgtcgaata tatgtcgcat
     7141 cattcccaat attacctggt agatgtgcga ggtgctttcg ctcaatctca acgggtagat
     7201 tattcaccat atctttcatc tcaaattagg cttcagattt agaccattgg tcatgtttta
     7261 cgatagcctg tgtaatgtca attgtataga ttcccgcaat cttacaggct tctatgtggc
     7321 ctagaatcgc ttcaattaat tcttcagtgg gagctctatc taggtgctct tcaatccatt
     7381 cagctatgga ttgacctagg ccatgccgat ctatcgtatc ctttagacga tcaatatcat
     7441 catccggagg gatttcgatt ttcagaccat cacctccggt accacagggt aatgctgaat
     7501 ttcctcatcg gtccacatgt tgagcgggtc ttcgatacta tcaggtaagg tttgacccat
     7561 tgtgaggcgg catcttgatc tcttccaatg gtcgttgccg agtacaatcg ctacttcgag
     7621 gagtccggcg aaatttcgga gtgctgtacg atcggtgaag gaccagtagg ctgtccaggg
     7681 gtgtgtgtga atccatagtc ggaagggtag taccgcgcca ataggtgcgg agagacgtac
     7741 ctctccagag gacccaagat cgacgaatac cgccccttca gcatcctgaa tccaactaat
     7801 ttcgacaccc aaggcatgac ttacgttcca cacttcatcc catcgatctt ggataccaag
     7861 aatccgaagt gaattgacta tatcttcttc ttgatattca ccactcttga tttcttgaca
     7921 tagccgattc gaatcaattt cagaatctat catattcttc attctcctac ctccacacta
     7981 acattttctc gttctagcag tctcctcaat ctatggaata atgcattcgt gctgcgccct
     8041 attttctttg aaatttcatc taggtccctt ccattatgat ctaaaccatc cagaagtatt
     8101 cgatcatcct catcagacca tggctcagtt gcttgtggag cagccttcat tacaggctca
     8161 actggtgttc cgaagatgtc aatgcggccc tttgtgatgg aatcacatat tgaattagga
     8221 aactctgttt catggccaca tcttctgagt agagaacgca taattgcatc tgcgagatga
     8281 actgctgcat tagcaaaccc aaattgaatt gcgccagatt cgattgcccc ttcaggttgg
     8341 caacttgccg gtgcatgttc aggtgtcaac gcatctacca tcgcagggtc tgatcggtct
     8401 gttagcagga gtgtgatgtc tcccatacaa cgcgagtcat accactcttt accttctaga
     8461 gaatggacaa tccttcgagg ctcaggtcga tcaactgcaa caataacgat gtctgcatct
     8521 tccagcacgg tcgcttcacg gagattgata ccgtgaggag ttaggcgaac agcatcgtgt
     8581 acgtctgcaa aggtttctgc cagcgcatcg actttgagca tcccgatttg gtttggtgtg
     8641 aaccgctggt ggataagatt gtcttcttcg actttgtcac cgtcatagag atgaaaatga
     8701 ataccccaca gttgttttgc aatcacacca ttccgtagcg cattgacgag gagaaggcaa
     8761 gtgtttgagc cgatacctcc ggctccgatg atgctgatgt tcaggggttg ttgtttagta
     8821 tccatggaag caagccttag aacggctaca atacataaac aaaatactac aaaacaagat
     8881 atgctggatt tgaggtataa caatggatga agacgaccac tcatctttag acgctgagaa
     8941 tgcaatttgg ttgacgtcta tgattcgtga agagttagat ctttggggcc ccctcaaaga
     9001 agtttcagca attcgcggat ggggacgtca tcctcgtatt ctcttacacg atttgaacgg
     9061 tctctttgga cacgctgttc tcgaccgcct tggttcttcg atagagttga ggacagtggt
     9121 acttgatcca cgtattcgtg gacaaggacg ttcgcatgaa ttggttgagc aggcgatttc
     9181 acggtggtat caggatgctc ttcttcacag agtatctcct ccgcttgaac catcatctcg
     9241 acgtccgcta atctcctgga ctagaagtgc aggtttagca gcagcatatc atcgagcggg
     9301 cttctacttg gtacagtctg aacgacgatg gagccgcctt tggctcttca gatccacatt
     9361 agcaaccctt cctttgcgtt tgcaaatctc tattgttcta aatcggatgt tacgaggtat
     9421 ttccatgttg tttcaagatc cggttagaat tggacaccaa atccgccatc tacgagaata
     9481 tcacttattc atattcgatc ctaaatcatc gctccaaatg ccatcgcgtg cgcaccccat
     9541 gtctgaaatg acagcggtta ctggtcgaca gttgattgaa atcgaggata gtcaagtaca
     9601 ggcgtttgtt aattgggacg caactgagga gggatgatga agggccccgt cttgggacgg
     9661 tcaatggctg ttgacccctt cgagccaatc gatattcgaa ttgagattat tatcggcact
     9721 ctcctcgtcc tcaataccct tccatttggc ttcggttttg cagggccatg ggaagatgca
     9781 ggcttcacac gcggtattgg cggccttatt ggctgctatc tgttctatcg agcttggttt
     9841 gcgactacct tcggcttcca tgggttaatt cctgcccttc atttgtggag taatcctagt
     9901 cggtcgtcat cccagcttac attgattgga gtagcaaccc ttggtttagg gtggataatc
     9961 gggggacccc tctcctctct gtttgcagac ccgacaggcc tcatcatcaa tttgtttggc
    10021 tgcctcatgc tgttagttgc aggttatgct tggctagtat tcgatggcgg cttgaaagat
    10081 gccgacgagg aagagtaaca ctcagaactt ccatccaatt aagatttgaa caaggcccac
    10141 caatgctaga atggagccaa gaagtgctga taggcgagca ttgtagctat attcgatagt
    10201 aacactctca ctcgctgctt ccatagaatt accagcaaca aaccggatat caccgccctc
    10261 taaagcccag tcgaaggccc ctcctgagta ggggccccct gcgagatacg tcaaactatc
    10321 acgatcgcag acaagataac catcattgcc actggaacaa tgctcctcat ccgaggcggg
    10381 tacgatagca atccaaacgt tttgtgatcc ccaatcgacg gagacatctg cagttagaag
    10441 ggtggctgca gtttcaggta tattcactcc atcttccagc atgactacct tatcacagac
    10501 attgaggcca aggattccgg aatcacatgc agggacgtca ctatccaaag accctgagcc
    10561 agaatatccc actatcccag caggtactgt gacaagaatc atgattacac cagagacaat
    10621 ccatccaatc ttcattgtgt tgaggagagc acccctgtcc ttgaatcgca tggttatacg
    10681 agcgatgata ccttggttcg tgcgtgatac agaaacactc aacgaagccg agttgttgat
    10741 atattcgtcg agattggcca gatacttacc cctaggtgta taccatggaa cagatgacat
    10801 tgaatcagaa gatgaatcag gccaaacgtc agacgtcagc tctcacatta gtgatgctga
    10861 tggtcttcag caccaccctc gcgttgcttc cagtcgcagc ggatggtggc gagattgaca
    10921 tgggaatttt cgctccagcc gaagatcgca ccccgattca atccacctat cagggtggca
    10981 accaaccagg aggcgcacct gttcccggag ctctggatca gtcgcgtttc aatcaccctg
    11041 ccctcagcga cccaacttgg aatgacattc tcgccggcac tggcaaggtt ggagacatct
    11101 cggccctaca acttagatcc gaggcatatt cattcctcct tgaagagacc aatctcggtg
    11161 atcacgacaa cgatggtatc ggtgatctcg acgatctaga cgacgataat gacggaattt
    11221 acgacctaat cgaacgattt gatggttgct ttggaactga ccctcttgac catgacaatg
    11281 acggcgttgt agacgagtat gattacgatg acgacaatga cggcatcctt gaggggccaa
    11341 tcgattatac tcaaggtgca gacccgttaa acgtctcaac tgaccgctat gtcgagccta
    11401 gcacaatcca tccatggacg ttgactgctg ttggaccagg atacatggtt gatcagaacc
    11461 cgttagaccg tgacaacgac ggtgtcaatg atgaggatcc tgatggtagt gggcgcgaat
    11521 ctttcgatga agatgacgat aatgatggcc gccttgatca gttcaagtgg ccgtgcgact
    11581 tcgattatga tgggatccag gattatttcg atgatgatga tgatggtgac ggcaccatgg
    11641 attacatgga tcgcgatcca tacaactcta gtatcactca gacgatgcct gctgctgctg
    11701 ctgccagctc atctgacgaa ttggtctacg atgcggcggc cccctggact ttcaccagtt
    11761 acgcgctgta ctccttcagt gtcgactacg taacactcga atctcagtat catccgaact
    11821 ccccagcatt cacttcaatt gtggatggtg accttgatgg cgacggcatc ccgaatttcc
    11881 ttgacccgga caatgatggt gacgggtttc ccgactctgc ggacactgac gatgataacg
    11941 acggtattct agacatgttt gatcctgatg atgacaatga tggtatcaag gatgtatgtc
    12001 tccgtatcga taccaacg
//
LOCUS       DUKB01000041            4439 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_169587, whole genome shotgun sequence.
ACCESSION   DUKB01000041 DUKB01000000
VERSION     DUKB01000041.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4439)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4439)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4439
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_169587"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /gene="thyA"
                     /locus_tag="HA345_01575"
     CDS             <1..554
                     /gene="thyA"
                     /locus_tag="HA345_01575"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HIH84078.1"
                     /translation="EWADENGDLGPVYGKQWRKWEAKDGRIIDQLQNAIKMIQENPTS
                     RRIIVNAWNVGELDDMALMPCHAFFQFYVANGELSLHLYQRSADVFLGVPFNISSYAL
                     LCCMVAQVTGLKPGDFVHTIGDAHLYLNHLDQAREQISREPKSWPYLELNSDCKTIDD
                     FTYDDIKIHDYEHHPHIKAPISV"
     gene            607..996
                     /locus_tag="HA345_01580"
     CDS             607..996
                     /locus_tag="HA345_01580"
                     /inference="COORDINATES: protein motif:HMM:NF014672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE family protein"
                     /protein_id="HIH84079.1"
                     /translation="MSKKYFVKFVSEPKNDPIKTIVGIACAARAMADGHELSVFFAAA
                     GTRLLDQSYIEELDREMGPESKAVTEMMQAITSNAVIYCSFASVKATLGHSEGDGALI
                     VPDDKIKWSGPPGVIELSSSSDIQLVY"
     gene            1045..1560
                     /locus_tag="HA345_01585"
     CDS             1045..1560
                     /locus_tag="HA345_01585"
                     /inference="COORDINATES: protein motif:HMM:NF012413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HIH84080.1"
                     /translation="MRVCLIAAVSENGVIGIDGDLPWRVKSDMLRFKRLTTGDGDDTG
                     AVIMGRKTWESLPDSHRPLDDRVNIVLTQQTGWTDDGAEAAFYPGQAMEISFAEGCEE
                     TWIIGGAGTYAAMFDRVDEIHLTTIHADINGDVHMPDWDRSTWKEEIVERCESSADDD
                     YASTYSIWRKA"
     gene            complement(1561..2085)
                     /locus_tag="HA345_01590"
     CDS             complement(1561..2085)
                     /locus_tag="HA345_01590"
                     /inference="COORDINATES: protein motif:HMM:NF017778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84081.1"
                     /translation="MADSRIMDQVVVADLRAADSGLDNLIVWLDEQTPRPGLENLGER
                     LSGLSMDVAELRSKIASNQNEYCRNILARTDAYELVAILWTPGQDTPIHDHRGSDCAF
                     VILDGHSTETIYELDQNGRAVPVSKRIYHPGEVCAADEPDIHRISNDTDTELLNLHVY
                     TPPLGGFRIYDAAE"
     gene            complement(2127..3005)
                     /gene="folD"
                     /locus_tag="HA345_01595"
     CDS             complement(2127..3005)
                     /gene="folD"
                     /locus_tag="HA345_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005436241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HIH84082.1"
                     /translation="MGANRLDGKVCAKKVESALNSRIRTLAEAGSQPHLAVVIVGDDP
                     ASHVYVRSKERACERLGIRSTRIDLPADTSFHEVLETVNSLNQDSDVDGILVQSPLPR
                     GMDELAITDRILPEKDVDGFHPVNLGRLVQGRLDGLLPCTPAGVMYLLKDAELDLTGL
                     KAVVLGRSRIVGMPMALLLAARGADATVTVVHSRTTNIKDHCRDADLIVAAVGRPEMV
                     RSEWVKPGAIIVDVGINRVDDSSIDRGYRLCGDVEEEVESIASYMTPVPGGVGPMTIA
                     MLMSNTVRAAEMRKTP"
     gene            complement(3055..3129)
                     /locus_tag="HA345_01600"
     tRNA            complement(3055..3129)
                     /locus_tag="HA345_01600"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3095..3097),aa:Thr,seq:tgt)
     gene            3332..>4439
                     /locus_tag="HA345_01605"
     CDS             3332..>4439
                     /locus_tag="HA345_01605"
                     /inference="COORDINATES: protein motif:HMM:NF012382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HIH84083.1"
                     /translation="MNGTIGALLDDEGELVFNPAVAEAITRLPDLDKGAYSPLPGLPA
                     YRDTARTLAIGPRLDEMESAGFSTEAIASPGGCGALYLSARNMLSPGDSILVRSTYWG
                     PYRTIADECGLGLTDWPLVANSDEVDHSVDMAALSSRLDDLVTSQGRVLAWLNDPAHN
                     PTGMSLKPTERNEVMNCFLEAARANPEAGFTLLLDTAYALYADEPHGWTDTVIPHIEN
                     WPDNLLLCWAFSTSKSHTIYGLRCGAIVFAHPDRGLLDRMVPMFVHTGRGTWSGSPRL
                     PQAAVAMIHTNSGLETMWDATRAAQSQVLEIRRERLLDAASEVHFDPSNDGYFAHVPD
                     HDPVSLCEEIAKHGVYLVPLAKGVRIGVCSLPTHA"
BASE COUNT         1160 a         1120 c         1111 g         1048 t
ORIGIN      
        1 atgaatgggc tgatgaaaat ggagacctcg gccccgtcta tgggaaacaa tggcggaagt
       61 gggaggcaaa ggatggacgc atcattgacc aacttcagaa tgcaatcaag atgattcagg
      121 agaatcccac aagtcgacga atcatcgtga atgcatggaa cgtaggagaa cttgacgaca
      181 tggctctgat gccgtgtcat gcattcttcc agttctatgt cgctaacgga gaactctctc
      241 ttcacctcta tcagagatcg gcagacgtct tcctcggtgt gccattcaat atctcatcct
      301 atgcgctcct atgttgcatg gttgcgcaag tcactggact caaacctggc gactttgttc
      361 atacaattgg agacgcccac ctatatctga atcatcttga tcaggcaaga gaacaaatct
      421 cacgtgagcc taagtcttgg ccataccttg aactaaattc cgattgtaag acaattgatg
      481 atttcaccta tgatgacatc aagattcacg attatgagca ccaccctcat atcaaggcac
      541 caatcagtgt ctgaactctg agatgatcta caaactcctc aaaaacctgc tacacctccc
      601 gaggttatga gcaagaaata tttcgtcaag tttgtttcag aaccgaagaa cgatcccatc
      661 aagacgattg ttggaatcgc atgtgcggca cgagcaatgg ccgatggcca cgaacttagt
      721 gtgttctttg ctgctgctgg gacgcggctt ctagaccaat catacatcga ggaactggat
      781 cgagagatgg ggccggaatc taaggcagtc accgagatga tgcaagcaat aacatccaat
      841 gccgtaatct actgctcatt cgcttcagtc aaggctacac taggccacag cgaaggtgat
      901 ggagctctaa tcgtccccga tgacaaaatc aagtggagcg gccctccagg agtaattgaa
      961 ctaagttctt catcggatat tcagcttgtt tactagattg cgctgcaccg tgtaattcat
     1021 gcccatgaag ggtatcagga gtttatgcgg gtctgtttga ttgctgctgt aagtgagaac
     1081 ggagtcattg gaattgatgg ggaccttcct tggcgtgtca agagcgacat gctccgtttc
     1141 aagcgattaa ctactggtga cggagacgac acaggtgcag tcatcatggg gcgaaagaca
     1201 tgggaatctc ttcctgacag ccatcggccg ttagacgacc gagtcaatat tgtactcaca
     1261 caacagaccg gttggactga tgatggagca gaagctgcat tctatccggg gcaggccatg
     1321 gaaatttcct tcgccgaggg ttgcgaagaa acgtggatta ttggtggtgc aggcacctat
     1381 gctgcaatgt tcgatcgtgt tgatgagatt catctgacca caatacacgc tgatatcaac
     1441 ggtgatgtgc acatgccgga ttgggaccgt tcgacttgga aggaagaaat tgttgaacgc
     1501 tgcgaatcaa gtgcagatga tgattatgca tcgacatatt cgatttggcg caaggcctaa
     1561 tcattccgca gcatcatata ttctgaaacc gcccaatggt ggcgtataca catgaagatt
     1621 caacagttca gtatctgtat cgtttgaaat tcgatgaata tcgggctcat cggctgcaca
     1681 tacttcacca gggtgataga tacgcttgga gacaggtacg gcacgaccat tctggtcaag
     1741 ttcgtagata gtctcggtcg agtggccatc gagtatgaca aaagcacagt cagaaccacg
     1801 atggtcgtga atgggtgtat cctgaccagg agtccagaga atcgctacga gttcgtaagc
     1861 atcggttcga gcaagaatat tgcgacaata ctcattttgg tttgaagcaa tttttgaacg
     1921 caattcagcc acatccatgg atagaccaga gaggcgttca ccaagattct caagtcctgg
     1981 tcgaggcgtt tgctcatcga gccagacaat gagattatcc aacccagaat cagcagcgcg
     2041 gaggtccgca actaccacct gatccatgat acgcgaatca gccatcaagt tccctaagat
     2101 gagggggatt attcatcgtg tctgtgtcaa ggtgtctttc tcatctcggc tgcacggacg
     2161 gtgttagaca tgagcatcgc aatggtcatt ggaccaactc ctccagggac gggagtcatg
     2221 taagacgcaa tagattcgac ttcttcttcc acgtccccac agagacggta cccgcgatct
     2281 atggaggagt catcgactcg atttattccg acatcaacaa taattgcacc tggtttcacc
     2341 cattctgaac gtaccatctc agggcgacca acagcggcta caatcaaatc tgcatctcgg
     2401 cagtgatcct tgatgttcgt ggtacgtgaa tgaactaccg taactgtagc atccgcacct
     2461 cttgccgcaa gaagaagagc cattggcata cctacgattc gtgatcgacc aagtacgact
     2521 gccttgagcc ctgttaaatc cagttctgcg tctttgagta gatacatgac gccggcagga
     2581 gtacatggaa gcaagccatc tagtcggccc tgaacgagac gaccgagatt gacaggatgg
     2641 aaaccatcga catccttctc aggaagaatt cgatccgtaa tcgccaactc gtccatcccc
     2701 ctaggcaggg gtgactggac gaggattcca tccacatcag aatcctgatt cagcgagtta
     2761 actgtttcca agacctcatg gaaggaagta tcggcaggta aatcgattcg tgtgcttcga
     2821 atcccaagac gctcacaggc gcgttctttc gaccggacgt agacatgact agctggatca
     2881 tcgcccacaa ttacaactgc aaggtgaggt tgagagccgg cctctgccaa agttcgtatt
     2941 cgcgaattaa gcgctgattc gaccttctta gcgcaaacct tcccgtccaa acggttcgct
     3001 cccatggagc ggcgacagga cacctgacat tgaatgcttc cgagcaaatg aatgtggagc
     3061 ctgcggaggg attcgaaccc ccgatcgcct gattacaaat caggtgcctt accacttggc
     3121 cacgcaggcg taacctgcgg acacccaatc ccctcttcaa ccctaatgga accacattca
     3181 agagccgatt ggatgaaatc ggctcatgca ggacgaatct ggcttggccg ggattctgct
     3241 tccacctcac gccgcagcga aagcggggaa cgatgtcatc tatgcatggt aggcccgcta
     3301 ccagaaggca gccgctgagg gaaaagatgt cgtgaacggc accattggtg cattattaga
     3361 cgatgagggc gaactcgtgt tcaacccagc tgtcgcagag gccatcactc gtctccccga
     3421 tcttgacaag ggagcctaca gccccctacc aggtctaccc gcctatcgag acactgcgcg
     3481 gacactcgca attggtccac gtctcgatga aatggaatct gctggattct ccactgaagc
     3541 aatcgcatcg ccaggtggtt gtggcgcgct gtatctcagt gcacgaaaca tgctttcccc
     3601 gggagattca atcttggtga gaagcacata ctggggcccg tatcgtacga ttgccgatga
     3661 atgtggacta ggactcacag attggccact ggttgctaat tcggatgaag tggatcactc
     3721 tgtagatatg gcagcacttt cctctagatt ggatgatctg gttacatcgc aaggacgtgt
     3781 gctcgcttgg ctgaatgacc ctgcacacaa cccgacagga atgagtttga aaccaacaga
     3841 gcgcaacgag gtgatgaact gcttccttga agccgcacga gcgaatccgg aagcggggtt
     3901 cacacttcta cttgacacgg cttatgccct ctatgcagat gagcctcatg gatggactga
     3961 cacagtcata ccacacatcg aaaactggcc tgataatctc ctactctgtt gggccttctc
     4021 tacctccaaa agccacacta tctatggcct acgatgcggg gcaattgtat tcgcacatcc
     4081 tgatcgtgga ctattggatc gcatggtacc aatgtttgta cacacagggc gtgggacatg
     4141 gtcgggatca ccccgattac cacaagcagc tgttgctatg attcacacca actccggctt
     4201 ggaaacaatg tgggatgcta ctcgtgcagc tcagagtcaa gtgcttgaaa tccgtagaga
     4261 acgtcttctg gatgcagcgt cagaagtaca tttcgatccg agtaatgatg gatacttcgc
     4321 ccatgttccc gatcatgacc ccgttagcct ctgcgaagag attgctaaac atggagtata
     4381 tctcgtccca ttggcgaaag gagtgcggat tggtgtatgc tctctgccga cgcatgcag
//
LOCUS       DUKB01000042            2577 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_40644, whole genome shotgun sequence.
ACCESSION   DUKB01000042 DUKB01000000
VERSION     DUKB01000042.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2577)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2577)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2577
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_40644"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="HA345_01610"
     CDS             <1..234
                     /locus_tag="HA345_01610"
                     /inference="COORDINATES: protein motif:HMM:NF013143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84084.1"
                     /translation="PAATTQIISRSFRGCMLWAQAFGLSATFLGIYFAAELNTGTGAM
                     IAVVAATQFVLLGLIKTFSVQIRRYVESKNQST"
     gene            complement(277..1983)
                     /locus_tag="HA345_01615"
     CDS             complement(277..1983)
                     /locus_tag="HA345_01615"
                     /EC_number="6.3.5.1"
                     /inference="COORDINATES: protein motif:HMM:NF010588.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HIH84085.1"
                     /translation="MTVIALLQIDPTVGDIKGNAKRISRAASIAHENGADLAVTPELA
                     MSGYPPRDLLNHGGFVKRCLEEVHDLKVNLPLIVGCPIPPETERTRPGNGAVRVIPNR
                     PTRVVTQKQLLPTYDVFDEERYFHSDTKPGILRVVDGQSIGVTICEDAWQHAGLVPND
                     YSVDPIEQLASFSMEGEALILTVNLSSSPYHAHKQGTRAEVAMSAARTLGHPFLLCNQ
                     VGGNDDLIFDGRSMVAWSDGEIAQAPAWVEGVMMVDLESRNVRFLGLDGSEEIELQVY
                     KHQFGFVKKEEDLLEAVTIGLRDYCTKSGLSSVVLGMSGGIDSAVTAAIAARALGPEN
                     VIGISMPSRHSSDHSISDAEITAEALGMELLSMPIRSMHDPAEKLLLDEINQGSDIAA
                     ENLQSRLRGLLVMGVANARGAMAIATGNKSELAMGYCTLYGDMAGGYAPLGDVWKTEV
                     YALARAINDEAVKSGKTPPISESTLNKPPSAELAPDQVDRDALPPYEVLDEILRLHME
                     EGLSGEAIAGFTGKDEAMITDLLARFSRNEHKRWQMAPSPRVSGRAFGQGWRQPLAAK
                     KD"
     gene            complement(2059..2562)
                     /locus_tag="HA345_01620"
     CDS             complement(2059..2562)
                     /locus_tag="HA345_01620"
                     /inference="COORDINATES: protein motif:HMM:NF024907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84086.1"
                     /translation="MFDAQTEHHGTSGIDLVDVDGDGDLDIVATNGDAMDWNLPDDIH
                     PSDIHGLSILTNDGNGSFTRDEIVGVWGAYASTMHDVNQDGNLDIVLVCIQIPQQFPE
                     IERTPLLILERNGTNWDRIDVDMDEIDHMITIVSTGEHLLVGSHAPSSPEGGVNRLAM
                     LTIITPE"
BASE COUNT          594 a          664 c          634 g          685 t
ORIGIN      
        1 cctgctgcga ctactcaaat tatcagtcgt agttttcgag gttgtatgtt atgggctcaa
       61 gccttcggac tctcagcaac atttcttggt atctacttcg cagcagagtt gaacaccgga
      121 acaggtgcaa tgattgccgt agttgccgct acacagttcg tccttctcgg tttaatcaag
      181 acattttctg tacaaattcg taggtatgtg gaatcgaaga atcagagcac ttgaaacggc
      241 acggataacc cgatatttcg gtggttttga cgaaaatcaa tccttttttg cagcaagcgg
      301 ctgcctccac ccttgtccga atgctcgtcc agatacgcgc ggtgatggcg ccatctgcca
      361 tcgtttgtgc tcgtttcggc tgaatcgagc aagtaaatca gtaatcattg cttcatcctt
      421 gccggtgaaa ccagcaatgg cctcgccact gagaccttcc tccatatgga ggcgaagaat
      481 ctcatcaagg acctcatatg gaggcaatgc atcccgatct acttgatctg gtgcaagttc
      541 agcggatggt ggcttgttta gtgtcgactc tgagattggt ggcgtcttcc cactcttcac
      601 tgcctcatca ttgattgcac gggcaagagc gtagacctca gtcttccaga catcgccaag
      661 tggcgcatat cctcctgcca tgtcgccata gagcgtgcag tagcccattg ctaactcgga
      721 cttatttccg gttgcaatcg ccatcgcacc gcgtgcgtta gcgactccca tgacaagcag
      781 gccccttaga cgggattgaa gattctctgc agcgatgtcg ctcccttgat ttatctcatc
      841 gagcagaagc ttctctgctg ggtcatgcat actgcgaatc ggcatggata ggagttccat
      901 accgagggcc tctgcagtaa tctcagcgtc ggagattgaa tggtcgctgg aatggcgact
      961 tggcatcgag attccgatga cgttctctgg tccaagagct cgagcagcaa ttgcggcagt
     1021 gacggcagag tcaatcccgc cactcattcc aagtacaact gaggagagtc cagatttcgt
     1081 gcaatagtcc cgtaatccga ttgtaacggc ttcaaggagg tcttcttcct tcttcacaaa
     1141 tccaaactgg tgcttgtaga cttggagttc aatctcctcc gagccatcga ggccaaggaa
     1201 tcgtacattc ctagattcga ggtcaaccat catcacacct tcgacccaag ccggtgcttg
     1261 tgcaatttca ccatcagacc aagcaaccat gctgcgtcca tcgaaaatca aatcatcatt
     1321 gccccctact tggttgcaga gtaggaatgg atggcccagt gttcttgctg cagacatcgc
     1381 tacctctgct cgagttccct gtttgtgggc atggtaaggt gaggatgaga gattcactgt
     1441 taggatgagt gcttcccctt ccatcgagaa tgatgcaagt tgctcgatgg ggtctacgga
     1501 gtagtcgttg ggcactaaac cagcatgctg ccaagcatct tcgcagatgg tgacgccaat
     1561 actttgtccg tccacaactc gtagaatacc cggttttgtg tctgaatgaa agtagcgttc
     1621 ttcgtcgaag acatcgtatg tcgggagtaa ctgtttctga gtcacgacac gcgtcggtcg
     1681 atttgggatt acgcggacgg cgccgttacc tgggcgtgtg cgttcggttt cggggggaat
     1741 tgggcaacct acgataagag gcagattcac ctttaggtca tgtacctcct caagacatcg
     1801 cttgacgaat cctccatgat ttaggagatc acgaggaggg tagcccgaca ttgctagttc
     1861 tggtgttact gcaaggtcag cgccattttc atgggcgata gaggcggctc gagatatacg
     1921 tttagcgttg cctttgatgt ctcccaccgt ggggtcaatc tgaagcagcg cgatgaccgt
     1981 catctgaggt cctcgatgcc tcctctccgt cggcctcatt caacgttccg cacagagatg
     2041 taatggtaat aatggccctt attcaggcgt tataatcgtc aacattgcaa gtcgattcac
     2101 tccaccttcg ggggaactag gtgcatgact ccccactagg agatgctctc cagtggacac
     2161 aatcgtaatc atgtggtcga tttcatccat gtctacatca attcggtccc aatttgttcc
     2221 attccgttca aggatgagga gaggagtgcg ctcaatctca gggaattgtt gcggaatctg
     2281 tatgcagacg aggacaatgt caagattccc atcttggttc acatcatgca tggtgcttgc
     2341 gtaagcgccc catactccta caatctcgtc acgagtgaat gatccgttac catcattcgt
     2401 cagaatggaa aggccatgaa tatcacttgg atgaatatca tcaggtagat tccagtccat
     2461 cgcatctccg tttgttgcta cgatgtcaag gtccccatct ccatccacat caactaggtc
     2521 aataccactg gttccatgat gttctgtctg cgcatcgaac aatacctcgt tggtgaa
//
LOCUS       DUKB01000043            2972 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_68942, whole genome shotgun sequence.
ACCESSION   DUKB01000043 DUKB01000000
VERSION     DUKB01000043.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2972)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2972)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_68942"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="HA345_01625"
     CDS             complement(<1..767)
                     /locus_tag="HA345_01625"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84087.1"
                     /translation="MGDVLLRVESVSKSFGEVDALRDVDIELRRGEIVGLVGGNGAGK
                     TTLLRLLCGVYRPSVGRVAFMVDGKEEPVDQVRERLGVVPEATGLYHRLTAWENIRYH
                     TRIHGRSDKASWARTLRFARALDIEDELHRSTRGFSRGMRQKIALIRAVAHGPDLLLL
                     DEPTAGLDVTSARKVRGLVRSLGDEGGTVIYSTHMLSEAQRICDRILIIHNGTVRADG
                     SPDDLLESTGTADLEDAYMALTQDVSRMDRLGCRDTDG"
     gene            complement(778..1083)
                     /locus_tag="HA345_01630"
     CDS             complement(778..1083)
                     /locus_tag="HA345_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84088.1"
                     /translation="MESLLSEIRVEIKLITADQIRSRIESLVDALDVLRQDGAITNDA
                     YLDAGAIHGGLMMLSNLIEVGIDRTEVKSHMEDLISRAQRVEEVHPGLMASVDAAMR"
     gene            complement(1116..1538)
                     /gene="mce"
                     /locus_tag="HA345_01635"
     CDS             complement(1116..1538)
                     /gene="mce"
                     /locus_tag="HA345_01635"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014013613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HIH84089.1"
                     /translation="MNIEIDHIGIAVKTLDERTPFWTALGLLRGEDESLPDDGVIARF
                     LSTSGETSEPVRIELLEATGPDTPIGRFIDRRGEGVQQIAFRVDDVQLLIDRLVSNGV
                     RMIDEVARNGAHGSKIAFVHPSSTGGVLVELVQRPIAE"
     gene            complement(1548..>2972)
                     /locus_tag="HA345_01640"
     CDS             complement(1548..>2972)
                     /locus_tag="HA345_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HIH84090.1"
                     /translation="MRQYAGFSTAEATNQRFKLLLSEGQKGLSVAFDLPTQLGLDSDA
                     SLSYGEVGKVGVAIDSIDDMRRLFDGIDLGEVSTSMTINAPASILFALYVAVAEEKGV
                     PTEQLRGTIQNDVLKEYIARGLYVFPPEPSLRLATDVMRWCAKNAPAWNTISISGYHI
                     REAGSTAIEEVAFTLANALQYADSAISAGLDIDEFAPRMSFFFGCHNDFFEEIAKFRA
                     ARTLWHDLVQERYSPKDPRSARLRFHTQTAGVTLTAQQPMNNVVRVAYQAMAAVLGGT
                     QSLHTNAYDEALGLPTEDSVTIALRTQQILSEETGVPEVVDPLAGSVHIEHLTDEIVQ
                     SARKKIEEILDSGGAMEAIKRGDPQRAIHESAWSQLTDIESGTRRIIGVNHAEDDAPI
                     TDAGQSIDPVLVEAQLTRIDEHRKERDHDIVASRLESLRAACESDDDLFPHILDSVRN
                     GATVGEVMDIMRDVFGTWRAPSGI"
BASE COUNT          802 a          800 c          629 g          741 t
ORIGIN      
        1 ccatcggtat ctcgacaacc taatcggtcc atccgtgaga catcttgagt cagtgccatg
       61 taagcatctt caagatcagc agtacctgtg gattcgagta aatcatctgg tgatccatca
      121 gcacgtacag tcccattgtg tatgattaga attcggtcac atatgcgctg tgcctcagag
      181 agcatatgcg tactgtagat gacggttcca ccttcatctc caagagaacg gacaaggccg
      241 cgtacctttc tagcactcgt tacatcaaga cctgctgttg gttcatctag aagtagtaaa
      301 tcaggcccgt gagcaacagc tcgaatcaag gcaatcttct gcctcattcc tcgtgaaaaa
      361 ccgcgtgtac tccgatgtag ttcatcctca atatcaagag ctcgtgcaaa tcgaagagtt
      421 ctcgcccaag atgccttgtc tgaacgacca tgtattcgag tatggtatcg gatattctcc
      481 catgcggtca accgatgata cagacccgta gcctcaggaa caactcccag tcgttcacgt
      541 acctgatcaa caggctcttc cttaccatca accatgaagg ctactctacc aacagacgga
      601 cgatagaccc cgcaaagaag acgaagtaat gtcgtcttac ctgcgccatt accgccgaca
      661 aggccaacta tctctccgcg cctcagttcg atgtcgacat cccgaagagc atcgacttca
      721 ccaaatgact tggagaccga ttcaacgcgg agcagaacat ctcccatgga tatggcctca
      781 tctcatcgcg gcatctacag atgccatcaa tccaggatga acctcttcaa cacgctgggc
      841 tcttgagatt aggtcttcca tgtgactctt aacctcagtc cggtcaatac cgacctctat
      901 cagattggag agcatcatta atccaccatg aatcgcacct gcatctaggt aagcatcgtt
      961 tgtgattgct ccatcctggc gaagaacatc gagagcatca acaagggatt ctatcctcga
     1021 acgaatttga tcagcagtaa tcaatttgat ttctacacga atctcagata ggagggattc
     1081 catcaaatca ctcgactaga tactcaccta taacttcact cggcaatagg ccgttggaca
     1141 agttcaacga ggacgccacc ggtagaagat ggatggacga atgcaatctt ggatccatgg
     1201 gcgccgttgc gtgctacctc atcgatcatt cggacaccat tgctaacaag ccggtcgatt
     1261 agcaactgga catcatcgac acgaaacgca atttgctgaa caccttcgcc gcgacgatca
     1321 atgaatcgcc cgattggagt atctggccca gtagcttcga ggagttcgat ccttaccggc
     1381 tccgaggttt caccagatgt tgaaaggaaa cgagcaatga caccatcgtc cggtaaagat
     1441 tcgtcttcgc cacgtaggag gcctaatgct gtccagaaag gtgttctctc gtctaacgtc
     1501 ttaactgcaa ttccgatatg atcaatttca atattcatca caacacctca aattccactc
     1561 ggtgctctcc aagtaccaaa tacgtcgcgc atgatatcca tgacttctcc aactgtagct
     1621 ccgtttctga ctgaatctag gatatgagga aacaaatcat catctgattc acaggctgcc
     1681 ctcaacgatt caagtcgtga agccacaata tcatggtctc gttctttccg atgttcatcg
     1741 attcgagtca actgtgcttc gacgagtact ggatcaatag actgacctgc atccgtgatg
     1801 ggagcatcgt cttcagcatg attgacaccg atgatacgtc tcgttccaga ctcaatatct
     1861 gttaattggg accacgctga ttcatggatt gctctctgtg gatctccacg cttgatggcc
     1921 tccatagctc caccggaatc cagaatttct tcgatttttt tacgagcact ctgcacaatc
     1981 tcgtcagtca gatgctctat gtgaacagat cctgcgagag ggtcaaccac ttcaggaaca
     2041 cctgtttcct cactgagaat ctgctgagtc ctaagagcga ttgtcaccga atcctcagta
     2101 ggtaatccta atgcttcatc gtaggcatta gtgtgcaagg attgagttcc accaaggact
     2161 gcagccatcg cttgataggc gacccttacc acgttattca tcggctgttg agctgtcaag
     2221 gtaacccctg cagtctgagt atggaatcgt aatctggccg aacgtggatc cttagggcta
     2281 tagcgctcct gcactaaatc gtgccacaaa gtccgagccg ctcggaattt cgctatctcc
     2341 tcaaagaaat cgttgtggca accaaagaag aatgacatcc ttggggcgaa ctcatcaata
     2401 tccaaaccag cagaaatggc agaatcggca tattgcagtg cattggcaag agtaaaagca
     2461 acctcttcaa tcgctgttga acctgcctct ctgatgtgat atccactaat cgaaatggta
     2521 ttccaagctg gtgcattctt tgcacaccac ctcataacat ctgtcgcaag gcgtaggctt
     2581 ggttcgggag ggaatacgta gaggccacga gcgatatact ccttcagtac atcattctgg
     2641 attgtacccc taagttgctc agtaggcaca cccttctctt ccgctactgc gacatacaaa
     2701 gcaaacaata tggaggcagg agcattgatt gtcatcgagg ttgaaacctc acccaaatcg
     2761 attccatcaa acaaacgtct catatcatcg attgaatcaa tggcgacacc aacctttcca
     2821 acctctccgt aagaaagaga tgcgtcacta tccaaaccaa gttgagtcgg caagtcaaag
     2881 gccacactca accccttctg cccctcagat agaagcagtt tgaaccgttg atttgtggct
     2941 tctgctgtcg aaaaaccagc atattgacgc at
//
LOCUS       DUKB01000044            4692 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_161428, whole genome shotgun sequence.
ACCESSION   DUKB01000044 DUKB01000000
VERSION     DUKB01000044.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4692)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4692)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_161428"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1323
                     /gene="asnS"
                     /locus_tag="HA345_01645"
     CDS             <1..1323
                     /gene="asnS"
                     /locus_tag="HA345_01645"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015282709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HIH84091.1"
                     /translation="DVLAGAHDGETVELKGWVHRARGNNNIHFLSIRDSTGNIQCVGK
                     KTVLGDDTFEAFKSALIESSMIVSGEVVATDREHGHEIQVSSVEIIGPVDSSRPFPIG
                     ESDMLDVDEDGEMTYGGSKHTLDHRHLYLRTTRATTMLKLRSSAFGAIHDYFRSREFI
                     EYQAPNFVAGAVEGGSTLFEVPYFDKTAYLTQSWQLYAEAAMPALERLYTIAPSFRAE
                     KSRTRRHLTEFWHAEMEMAWANNDEIMGHAEGVVRHIARTMLDEREQELASLDRDLDA
                     IARYADNPYPRMRYDEAIERLQELKVDVEWGQDLDYSKEKVLTQDFEMPHFLTHYPKI
                     AKPFYHRVDPDDANYVLCHDLLAPEGYGEIIGGGERTWSEKEILERIDEEGTPRDPYQ
                     FYIDVRSYGGVPHGGFGLGVDRVVSWLAGASHIREVIPFPRTSRRVTP"
     gene            complement(1328..2164)
                     /locus_tag="HA345_01650"
     CDS             complement(1328..2164)
                     /locus_tag="HA345_01650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84092.1"
                     /translation="MDICYIVRNQALRIGSAVTRALEFTESVFVIQLEEDEQERYIAE
                     KLGAVVYSHEGWTTAPDIAKTLQDILLDSQSIIISLDNDWRLSELPALYTSARTAPDV
                     LLAVKRQTDSQEDKSGSKILEADAYAYSEVTIQHSICSKDGLAQIALQDRNNTPGDLT
                     QDLRVLVVEVTPKRKTTSQQSLTTISGFSRLLYWMLESRHPLILFGIPGALFFWVGFQ
                     MADSLVDIGGPHDTVGVGVALAAFVTTLIGVFAITASMILFVLSKQVERIQAEFTVTL
                     ES"
     gene            2275..3246
                     /locus_tag="HA345_01655"
     CDS             2275..3246
                     /locus_tag="HA345_01655"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HIH84093.1"
                     /translation="MNLAVVMPARDEEGHIAASILSVPSEVQAIIVIDDASVDNTASV
                     ASNTLDQCRDVYDHIALIDGGGSGVGAAILRGVKELIFLVENPEDWAFIVMAGDGQMD
                     PRDLPSLVTGLEASDHVKGNRFSHPSGLKNMPRVRRWASRLLSVLTSLATGWRWGDPQ
                     CGYTATRLSIMDEVPELGNWTGYGYPNWWALNMAQNSISVSEVPVRSVYSNETSGIRI
                     RSFLPRVSWMLLCGLWTRGWSWYVLGRGSRNAPLLTRTVLVSTWFGAILSILFSPVEI
                     ALLISTIPLFSIARFVDFHEQKSRTSLRDSSRGSNLRASESRHGGRD"
     gene            3230..3658
                     /locus_tag="HA345_01660"
     CDS             3230..3658
                     /locus_tag="HA345_01660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84094.1"
                     /translation="MEDEIEEGRGSLLTVIGLPALLATMCCLPSVVLVLFGLASVSAA
                     ASLSDTLYWGLDGWGWFRPALLSISFLLLVGGIVIYFRNRGICTLDDALRQRRKVINI
                     TLLILTTSISLYLFLNYVVLTEIGILLGLPWESSRVWVSG"
     gene            3702..>4692
                     /locus_tag="HA345_01665"
     CDS             3702..>4692
                     /locus_tag="HA345_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013458440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HIH84095.1"
                     /translation="MRALDGLRVLDLSRILAGPFATQVLSDLGADVVKVEPAWGDDTR
                     NWGPPFVNLEDSSTSAYFASCNRGKRSIVLDLKNTGDVGTIRTLLSQADVLVENFRVG
                     TLARMGLDPEQLMKEYPGLIICSITGFGQSGPRAKEAGYDVALQGMSGLMSITGIENG
                     PPVKVGVAWIDVLTGWTAVSGILAALHHRERTGDGQWIDLSLFDVALMSMVNQAQNWL
                     ATGDSPGRMGHAHPNIVPYQAFEGSNGWFILATGNDTQYRIVCEMVDRVDLCQSPFDT
                     NAGRLKHRSEIISSLSKVFLQRPIEDWLGQLKERGVPCAPIHSIGEAFQDGQAN"
BASE COUNT         1121 a         1027 c         1236 g         1308 t
ORIGIN      
        1 gatgttctcg caggtgctca cgacggcgag accgtcgaac tgaagggctg ggttcaccgg
       61 gcacgtggga acaacaacat acacttcctt agtatccgcg actctacggg aaatatccaa
      121 tgtgttggta agaaaacagt cctcggcgat gacacctttg aggcattcaa atcagccttg
      181 attgagtcga gtatgattgt atcaggtgag gttgttgcaa cagatagaga gcatggtcat
      241 gagattcaag tcagcagtgt tgagattatt ggtccagtcg attcgagtcg tcctttccct
      301 atcggtgaat cagatatgct ggatgtcgat gaggatggag agatgaccta tggtggatca
      361 aagcacaccc tcgatcatcg tcacctgtat cttcggacaa ctcgcgccac aacgatgctc
      421 aaacttcgca gctctgcctt tggagccatt catgattact tcagaagtcg agaattcatt
      481 gagtaccaag cgccaaactt tgttgccggt gctgttgaag ggggctcaac cctctttgaa
      541 gtcccctatt ttgacaagac agcctatctc acgcagtcat ggcaactcta tgctgaagcg
      601 gcaatgcctg cattggaacg attgtacact attgctccct catttcgtgc tgagaaatca
      661 aggactcgtc gtcatttgac cgagttttgg catgcagaga tggagatggc ttgggccaac
      721 aatgacgaga ttatggggca tgctgagggc gttgttcgcc acattgctcg aacgatgttg
      781 gatgaacgtg agcaggaact tgcttcactc gatcgagatc tagatgcgat tgcaagatat
      841 gccgataacc catatcctag gatgcgttac gatgaggcaa ttgaacgcct ccaggagttg
      901 aaagttgatg ttgaatgggg gcaagatctt gattactcaa aggagaaggt tctcactcag
      961 gattttgaaa tgccacactt cctaacgcat tatccgaaga tcgccaagcc gttttatcat
     1021 cgagtagatc ctgatgatgc taactatgtg ctctgtcatg atttactcgc gcccgaaggt
     1081 tacggggaga ttatcggcgg aggtgagcgc acgtggtctg agaaagagat tcttgagcga
     1141 atcgacgaag aaggcactcc tcgagacccc tatcaattct acatcgatgt ccggtcatat
     1201 gggggagtcc ctcacggcgg cttcggctta ggtgtagacc gcgtagttag ttggctcgct
     1261 ggagcttctc atatacgcga agtaatccct tttccacgaa catcgcgccg agtaactccc
     1321 tgattgttca tgattccaga gttacggtga attctgcttg gatgcgttct acctgctttg
     1381 atagtacgaa gagaatcata cttgcagtga ttgcgaaaac accgatgagg gtggtgacaa
     1441 aggccgctag tgcaacaccg acgccgacgg tatcatgggg tccgcctatg tcgacaagcg
     1501 agtctgccat ttggaaaccg acccagaaaa atagcgcacc aggaattcca aacagtatca
     1561 acggatgtct tgattcaagc atccagtaga gtagtcggga gaatccactg atagtagtaa
     1621 gtgactgctg agaggttgtt ttacgcttgg gtgtaacttc tacaacaagg acacgaagat
     1681 cttgtgttaa atcacctggc gtgttattcc tgtcttgtag ggcaatttgt gccagaccat
     1741 ccttagaaca gattgaatgt tgtatggtga cctcagaata tgcataagca tcggcttcta
     1801 gaatttttga accagattta tcttcctgtg aatcagtttg ccgttttaca gcgagaagta
     1861 catcgggagc agtccttgcg ctggtataca aggctggaag ttcagagagt ctccaatcat
     1921 tatctaatga gatgataatc gattgtgagt caagaaggat atcttgtaga gttttagcga
     1981 tgtctggtgc ggtagtccat ccctcgtgac tgtacacgac tgcacctagt ttctcggcaa
     2041 tgtaccgttc ttgctcatct tcctctagtt gtatgacaaa tactgactca gtgaattcta
     2101 gtgcgcgagt cacggctgac ccaatcctca gggcctgatt cctgacgatg tagcagatgt
     2161 ccacaggaca cctccgttgt atagacgcca tgaatcgttc ggaggaaaat ggtaccttac
     2221 ttcgaatttc tcgatttggc acaagagcca tcatgcgtgt ccagatgtgg aaccatgaat
     2281 ctcgccgttg tcatgccggc aagggatgag gagggccaca tcgcagcgag catcctatcg
     2341 gtcccatctg aagttcaagc aatcattgta atcgatgatg cttcggtcga caataccgca
     2401 tcagttgcct caaatacgtt ggatcaatgt agagatgtgt atgaccatat tgcccttatt
     2461 gatggtgggg gtagtggtgt cggagcagca attttgaggg gggttaagga attgattttt
     2521 ttagtggaaa atcctgaaga ttgggcgttc atagttatgg ccggcgatgg ccagatggat
     2581 ccgagagatt taccatcact tgttacagga ttggaggctt ctgatcatgt caaagggaat
     2641 cgcttcagtc acccttctgg tctgaagaat atgcctagag tcaggagatg ggcgagccgc
     2701 ttactctctg tccttacctc acttgcaaca ggttggagat ggggtgatcc acagtgtgga
     2761 tacacggcta ctcgtctctc gataatggat gaggtgccgg aacttgggaa ttggactggc
     2821 tatggttatc ccaattggtg ggcattgaat atggcacaga attctatttc ggtttctgag
     2881 gtgcctgttc gttcagtata ttctaacgag acatctggaa ttagaatccg tagtttcctt
     2941 cctcgtgtat cctggatgtt attgtgcggc ctttggactc gaggatggtc gtggtatgtc
     3001 cttggtcgag gctcaagaaa tgcaccatta cttactcgaa ctgtgttggt tagcacatgg
     3061 ttcggtgcaa ttttatcaat cttgttcagt ccagtagaaa tagctcttct gatctcgaca
     3121 atcccgttgt tttcaattgc tcgatttgtt gatttccatg aacagaaatc gagaacttca
     3181 ttgcgggatt caagcagggg ttcaaatctg cgtgcatctg aatcaagaca tggaggacga
     3241 gattgaggag ggccgcggtt ccctcctaac tgtcatcggt cttcctgccc tccttgcaac
     3301 tatgtgttgt cttccgagtg ttgtccttgt tctctttggt ctcgcctcag tctccgcagc
     3361 cgcatctctg tctgacacat tgtattgggg gttggatggt tggggctggt ttcgacctgc
     3421 tctcctcagt atttccttcc tcttactcgt tggtggtatt gtaatctact tcaggaatag
     3481 ggggatatgt accttagacg atgcgttaag gcaacgtcga aaggtaatca atatcacatt
     3541 gctaatacta acaacctcga ttagcttgta tctattcctg aactatgttg tgcttacaga
     3601 gatcggcatt cttctaggtt taccttggga gagttctagg gtatgggtta gtggttgaaa
     3661 gagcaatcag caaagaaccg tgttgttgaa tcagattcat gattcgggct ctagatggtc
     3721 tccgtgtcct tgatttaagc cgaattctcg caggtccatt tgcgacacag gtactgagtg
     3781 atctcggagc agatgttgtc aaggttgaac cggcatgggg tgacgatacc agaaactggg
     3841 ggcctccatt cgttaatctg gaggattctt caacttcagc ttatttcgca tcctgtaatc
     3901 gaggtaagcg cagcatcgtt ctagatctga agaatacggg tgacgttggt acaatacgaa
     3961 cactactctc ccaagcggat gtactcgttg agaacttccg tgtgggcaca ttggctagaa
     4021 tgggtcttga tccagagcaa ttgatgaagg aataccctgg actaatcatc tgttccatta
     4081 ccggtttcgg tcaatctggg ccaagggcga aggaggccgg gtatgacgtc gctctccaag
     4141 ggatgagtgg tttgatgtcg attactggta ttgaaaatgg accccccgtc aaggtcggtg
     4201 tcgcttggat tgatgttttg acaggctgga cagccgtttc aggcattctc gctgcgttac
     4261 accacaggga gcgtacgggg gatggtcagt ggatcgattt gagtctcttt gatgtcgcat
     4321 tgatgtcgat ggtgaatcag gcacagaatt ggttggcaac tggggattct cctggccgta
     4381 tggggcatgc ccatccgaat attgtcccct atcaggcgtt tgaaggatcc aacggctggt
     4441 tcattttggc aaccggtaac gatactcaat accgaatagt atgcgagatg gttgatcggg
     4501 ttgacctctg tcaatcgccc tttgatacga atgcagggcg tctgaaacat cgtagtgaga
     4561 ttatttcctc actttccaag gtcttccttc agaggcctat cgaggattgg ttgggtcagt
     4621 tgaaggaacg cggcgtcccc tgtgctccta tccattcgat tggggaagcc ttccaagatg
     4681 gccaagccaa tg
//
LOCUS       DUKB01000045           10212 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_28174, whole genome shotgun sequence.
ACCESSION   DUKB01000045 DUKB01000000
VERSION     DUKB01000045.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10212)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10212)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10212
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_28174"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1870
                     /locus_tag="HA345_01670"
     CDS             <1..1870
                     /locus_tag="HA345_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011368939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HIH84096.1"
                     /translation="GVHAGVRVGGNESGIPTVNGAIVFDERYIGKPLVYCGTVGLMPR
                     RLADGRESHEKNPTPGDAVYMVGGRVGYDGIHGATFSSLELTDESPSSAVQIGDPITQ
                     KKMMDMILEARDACLITCITDNGAGGLSSSIGEMAEYTNGCEIDLGKVPLKQEGLSSW
                     EILVSESQERMTVAVAPKDVEAFEALAALHEVEATIVAEFTNTGYFHVKHGEETVAYL
                     PIEFLHDGVPQLELESEWVPPVQPEFNPPTSLDNTILLEEMLARPNIASKETWVRQYD
                     HEVIAQTAVKPFVGKERDGPGDAGLIAPIHGDPQGIVVSCGIAPRYSDIDAGAMVAAA
                     IDEAVRNAVCVGVDIDKMAGLDNFCWPDPVESEKTPDGRYKLAQLVRANRALDDVCRA
                     YGLPCISGKDSMKNDATLEGRKISVPPTLLFSLIGDQPDVRTATSSDFKKSGDAIYIV
                     GETRQELGASEFSFMLRDQTSGESGIGGRVPSIEPERNLGAYRALTAAMRNGLVASAH
                     DCSDGGLASALAESCFGVDAGASVDIGALRGHDDELDAWGALFGESLGRILVSVKPED
                     MTSFESAMQETACTHIGIVGESDDLVIKDAGNPILEFSISELRSAWKNTLNGSGSE"
     gene            1867..2685
                     /locus_tag="HA345_01675"
     CDS             1867..2685
                     /locus_tag="HA345_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011697306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HIH84097.1"
                     /translation="MTVKVAVLTGFGINCDRETVAVFEMVGATAERVHVNHFVEGERN
                     LSEFHIMAVPGGFSFGDHLGSGRLLGNRLRFGMREQVRSFVHSGGLVIGICNGFQVLV
                     KMGLLPGDDDVSLTQTASLALNDSGHYEDRWVTLEFNSESSCVWTKDLERIRVPVRHG
                     EGKFVAANVELMDHWDQSGQVVVRYVDPNSTYPSSSDELLPYPISPNASMRNIAGVCD
                     PTGRVFGLMPHPEANHSTWLGATWTRELTVSEHGEGEGLAIFRNAVDYVEKNLK"
     gene            complement(2695..3174)
                     /locus_tag="HA345_01680"
     CDS             complement(2695..3174)
                     /locus_tag="HA345_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HIH84098.1"
                     /translation="MASVSGCISQESETPVISEDSMTVVPLFPEFELNDHRNLTWQSS
                     DLPNRYVAYFSAIWCTHCKPTLGALDEVIPNGSLLVFNKDGREGYSNVSKWHTEMEAG
                     LNRSLPHPFIHAPNIALELNVTPIPTVFFVHNGYIIQRWEGLHEDKDQIREIWDSMV"
     gene            complement(3220..3903)
                     /locus_tag="HA345_01685"
     CDS             complement(3220..3903)
                     /locus_tag="HA345_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84099.1"
                     /translation="MSLPRRAMQQMGFTICCLLCDAPDQEGSARCRSCISTHKRVRER
                     LSKTAENTVDQFAKDLMILTSEPERHDHDPVHGPFLKEAVRLLSAHRGHRPPPTEEEV
                     MKAFELARKSSRDSNLRKTELDSIAEDGDALHGAIELVEAGSNKDYDTGQRTRPSRPI
                     PTVDRSERLGEDRELMDRFRAEEQIRGTGEEASEEIIEGLIDKRKKKRTELADELSGL
                     DDLIDSDGN"
     gene            3983..4414
                     /locus_tag="HA345_01690"
     CDS             3983..4414
                     /locus_tag="HA345_01690"
                     /inference="COORDINATES: protein motif:HMM:NF023395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HIH84100.1"
                     /translation="MAEPTLFTRIIRGEVPAHIIARSEYWVAFLDIYPRRPGHTLVVP
                     IEPVSHLRELSAESRRHLLDGVIEAQHILSKRFETDDFLVGIHDGSTAGQEVPHVHIH
                     VIPRTLDDGGLTLLSCWPHAPAPGGTPDFEELRKMAESLEY"
     gene            4424..5953
                     /locus_tag="HA345_01695"
     CDS             4424..5953
                     /locus_tag="HA345_01695"
                     /inference="COORDINATES: protein motif:HMM:NF013702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84101.1"
                     /translation="MSTPSGLDIERSSAAYDPEVATSASSRRLNQRGLDRVRWRHDGI
                     HPGIPWAWKALRGMLRLSWFTQFRNREISGADTIDPDRGLVALAWHTAGLVDPMAIVQ
                     SCEKRFIMVGRHDLMTRPIIGRWARSIGSQPVLRQREIDEGTTDATFAREINHRSLLT
                     VAHTISGGHGCVIMPEGTSQIEPRMMPLRSGPMRIALNAAAAAQARNRPLPSIRPVGL
                     HFREAWKFRTDCYVEFGQEIPIDDIVDDEAVDYLLDGKWKEPDFDSVNTLRNRIKESL
                     DILTPDADDWDEFHSWSVISHIEADAEKSPHASWSSEVHGIRSVRDRIRSGELDSKIM
                     EPASRIQSSLKSFSLDPRSISSEGVRPPSPMTWLGVIWGLSLMLLSAPLAVFTLPQAL
                     LAWYIGNNSDEGLDARSTFHILAVTFSPVLIWPYLGFAAATSFLMAYTDLITWQIVAA
                     SMICSIVFMPLFHIANLIFLRGYDSFFDFFTSLSQSRFRRSIEGSRVKDDVNTILAFL
                     K"
     gene            5974..6588
                     /locus_tag="HA345_01700"
     CDS             5974..6588
                     /locus_tag="HA345_01700"
                     /inference="COORDINATES: protein motif:HMM:NF021571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2299 family protein"
                     /protein_id="HIH84102.1"
                     /translation="MDAKEAINLIEHWLTEEGLQSKSLSDARAQKHLHVRYPPSRNGH
                     LFNIVIPKGRNLVIIGSVTRVDAAQQDEMTSHAEADPVGWEEWLHSTRLSLIGGQFDW
                     TIHVGKNETPQSGPLQAFNISRPIWFDGLNQHRFLDTLRRIWLSKLGVIHEIRFAYGQ
                     GSGNPGPVDDWTKSNQGSDGPTPPEVEFQDGLSFGSSFDVDEWA"
     gene            6579..>10212
                     /locus_tag="HA345_01705"
     CDS             6579..>10212
                     /locus_tag="HA345_01705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84103.1"
                     /translation="MGIVYRDPKWFRLSSGGLGIQVFNGRCAKMTYRAKTNSILLTIL
                     MVLSTTLILPSEEVEAAEVVITEAVRVVDGGPMNERMVSMAADSEGNIHFVWSRNTQH
                     LYYTMLDPRADVDGDGQADPVIDVTQISNPGTHRAWHPDIAVDSMDRVHVTWTDKSSQ
                     HAIKYTVLDPNLHPRDGSQADDTVISVVNDMIVSQRQQNRDWPAIAVDSQDNAHIVWE
                     DSFDPLEKFYFQPQIYYSMIEFDGSVGTTAIDDSMLTPVIGHKGHPDIAVDADDYVQV
                     VWDDTRGGKVEMVVPIDTSGSMYSEWADVCTVFYGGSFSSGGYFRGIKPMLEDANITV
                     YETIYAILGYGIPSAGQGNTCSTAYQTGGSGSQGPRATHLGQYPGDDSGGIRKLQNFI
                     FNGASVTGSSGEDWGPSSTWACLSWKDAGGNVPGNPPTASDHKWNPNATKIVIPISDE
                     GPRNGDPAQQSDDTQSINEAHDACVRAGVVPVPMAGSTWGGGTQIQSHMSDLANCPNG
                     VVNTNQRICPGSTIRNTDAGGEVYNFPASGGGGQQMQLLVEAMVYLATNNSREIFMTV
                     LAPHALLDNPSPGWQKGDPATTTTSSAYTEDVGPAMDSQGYGHFVVVNDTRVTLDDAF
                     SFHPAIAIDSQGNTHIAWMDGRGYGFEKNVNYEVLYTRLRLRGAAEWNGVEGGLPSYG
                     IKQIVDTRISDFEGPAGIQQGNPFAPSSYMPAILTDARDNIHITWLENSNSSQGEAIM
                     YARLNHTNDKPAWPLNSIAASVLDPWEPTEVTTWNSDKLGPNSGNAPELSQPPAFAND
                     LGSGAHIAWSDTNKCNDESNSNTYTLCYVHVLTGQVEVGLQEGETFYHVIEPGEDTMY
                     NLSVNNTTPGPPELVADTFSLNLTGVPLNWSATVYFSSNHTTIFPDTPIHLLGGERVE
                     VYMRVIAPSIYQADGDEVANIIVSAVSYKDPAIRSDRLTSTLMDVVHGIQLDTSHTQS
                     DVEQGGTAIFSITITNTGNVYDTFQFYDPNSLEGQQEWLLPYGWGVKFPLSISLEPGA
                     SVTKNLEVNIPTTQEPGTWVIFVKGWSMGEPVKSVEKGTYDILELWINVSIRSTGNIV
                     FEIFDTSEEVLPGECAEYVIKVTKFFAPGYLIFTLPGGPDERNTSIPTEIWRQDHWTV
                     TLDFLNAPDYDENTRYEPGIARYWDQTERPYSVTAEVCAPYLADAGLGPAVKVKAYLQ
                     GSPKVSD"
BASE COUNT         2647 a         2421 c         2495 g         2649 t
ORIGIN      
        1 tggtgttcat gcaggggttc gagtcggtgg aaacgaatct ggaattccaa cagtcaacgg
       61 ggctatcgtc tttgacgagc gctatattgg caaaccactg gtctactgtg ggacagttgg
      121 gctcatgcct cgtcgtcttg cagatggccg agaatcccat gaaaagaacc caactcctgg
      181 agatgcagtg tacatggttg gcggccgggt tggctacgat ggaatccatg gagctacatt
      241 ttcttctctt gaactgacag atgaatcacc atcaagcgcc gtacaaatcg gagatccaat
      301 tactcaaaag aaaatgatgg atatgattct tgaagcacgt gatgcatgtt taatcacctg
      361 cattaccgac aatggagcgg gtggactctc ttcatcaatt ggggaaatgg ctgaatacac
      421 aaacggttgt gaaatcgatt taggaaaggt tccgctcaaa caagagggac tttcatcatg
      481 ggaaattctc gtgtcagaat cacaagaacg tatgacagta gcagtcgctc ccaaagatgt
      541 tgaagccttt gaagcacttg cagcacttca tgaagtagaa gcaacaatag ttgcagaatt
      601 cacaaacaca gggtatttcc acgttaagca cggtgaagaa accgtagcat accttccaat
      661 tgaattcctt cacgacgggg tcccccaact tgagttagag tctgaatggg tccctccagt
      721 ccagccagaa ttcaatccac caacttctct cgataacaca atcctactcg aggaaatgct
      781 tgcacggcca aacattgctt ctaaggaaac atgggtacgg caatatgacc atgaagtcat
      841 cgcacaaact gcagttaagc cgtttgttgg aaaggaacga gatggtcctg gtgatgcggg
      901 ccttattgcc cctattcatg gcgatcctca aggaattgtt gtttcatgtg gaattgctcc
      961 aagatattct gatatcgacg caggagcgat ggttgcagca gcaatcgatg aagcggtacg
     1021 aaatgcagtt tgtgttggtg ttgatatcga taagatggct ggtcttgaca acttttgttg
     1081 gccggatccg gttgaaagtg aaaagacacc agatggccgt tacaaactag cacaattggt
     1141 tcgagcaaac cgtgcattag atgatgtctg tcgcgcatac gggctaccat gtatctcggg
     1201 caaggactca atgaagaatg acgcaactct cgagggccgt aagatcagtg ttccacctac
     1261 attgttattc agcctcatcg gcgaccaacc agatgtccga actgccacct cttcagattt
     1321 caaaaaatca ggagatgcaa tctacattgt aggcgagact cgtcaggaac ttggagcaag
     1381 tgaattttct tttatgctca gagaccagac tagtggtgag agcggcatag gtggacgcgt
     1441 tccttcaatc gaaccggagc gtaaccttgg ggcctatcgg gccttgacag cagcgatgag
     1501 aaacggtctt gtggcgagtg cacacgattg ttcggatggt ggtttagcat cagctttggc
     1561 cgaatcttgc tttggtgtag atgctggcgc gtcagtcgat atcggagcac ttcggggaca
     1621 tgacgatgaa ttagatgcat ggggcgccct attcggcgag agtctcgggc gaatccttgt
     1681 cagtgtaaag ccagaagata tgacttcttt tgagagtgca atgcaggaaa ccgcttgcac
     1741 gcatattgga atcgtgggtg aatcggatga tcttgtcatc aaagatgcag gcaacccaat
     1801 ccttgaattt tcaatctctg aacttcgatc ggcatggaaa aacacactga atgggagtgg
     1861 ttctgaatga cggtaaaagt ggcagttctc acgggttttg gcatcaattg cgatcgagag
     1921 actgtagcag tgttcgaaat ggtgggtgca accgcggaac gtgtccacgt caaccacttc
     1981 gtagaaggtg aacgtaatct atctgagttc cacattatgg cagttccagg gggattttca
     2041 tttggggatc atcttggtag tggcaggctt ctaggcaacc gccttcgatt tgggatgcgt
     2101 gaacaagttc gatcctttgt tcattctggc gggcttgtca tcgggatttg caatggtttt
     2161 caggttctag tgaagatggg gcttttaccc ggagatgatg atgtgagttt gacgcagacg
     2221 gcctcccttg ctctcaatga ttcaggacat tatgaggatc gatgggtgac gcttgaattc
     2281 aattcagaat cgtcctgcgt ctggacgaag gaccttgaac gtattcgcgt acccgttcgt
     2341 catggtgaag gtaagttcgt agctgcaaat gtggaattaa tggaccattg ggatcaatca
     2401 ggtcaggttg tggtgcgtta tgttgatccc aactctacat acccatcttc atctgacgaa
     2461 cttcttccat atccaatatc tccgaatgca agtatgagaa acattgcagg tgtatgcgat
     2521 ccaacaggtc gcgtctttgg attgatgcct cacccagaag ctaatcattc aacttggttg
     2581 ggggcgacct ggactcgaga acttacagta tccgaacatg gtgaagggga aggacttgca
     2641 atcttccgta atgctgttga ttatgtggag aagaatctca aataatctat tttctcagac
     2701 catggaatcc caaatttctc gaatctgatc cttatcttca tgtaaccctt cccagcgttg
     2761 gataatgtat ccattgtgga cgaagaacac tgttggtatt ggagtaacat tgagctccaa
     2821 agcaatattt ggggcatgaa taaatggatg tggcaatgaa cgattcagac ccgcttccat
     2881 ctctgtatgc catttactta cgttgctgta tccttctctc ccgtccttat tgaagacgag
     2941 aagagaacca tttggaatta cctcatctag ggccccgagc gttggcttgc aatgagtgca
     3001 ccaaatagct gagaagtatg ctacgtaccg attgggtaaa tcggaggatt gccaagtgag
     3061 atttctatga tcatttagct cgaattctgg gaatagtggc acgacagtca tactatcttc
     3121 agagataacg ggtgtttcgg attcttgact tatacaacca gacactgacg ccatcaggag
     3181 gatcagtata aggaaaaaaa ctctcaattt attcctctcc tagtttccat ccgaatcaat
     3241 aaggtcatca agcccactta attcatcagc aagttcagtt cgtttcttct tacgtttatc
     3301 gatgagcccc tcaatgattt cttcagacgc ctcttcacca gttcctctga tttgttcttc
     3361 tgctcggaat cggtccatta gctctcgatc ttctcccaat cgttcggatc tatctaccgt
     3421 tgggattggt cgtgatggcc tagttcgttg tccagtatcg taatctttgt ttgaaccagc
     3481 ctcaactagt tcgattgcgc catgcaaagc atcaccatct tcggcaattg aatctaattc
     3541 ggtctttctt aggtttgaat ctctagatga ttttcttgct aactcgaatg ccttcatcac
     3601 ttcttcttct gtagggggtg gacggtgacc tcggtgagca ctgagtaatc gcacggcttc
     3661 cttcagaaac gggccgtgta caggatcatg gtcgtgccgc tcgggttctg aagttagaat
     3721 catcaaatcc tttgcaaatt ggtctaccgt gttctctgca gttttagata accgctctct
     3781 tacacgtttg tgtgtggata tacaactcct acaccgagca ctaccctcct gatcaggcgc
     3841 atcacagagg aggcaacaga tggtgaaccc catctgctgc atggctcgcc ttggaagcga
     3901 catcggcacc tactctctcg ttctgcccaa gaaccctcgg ccgacccgtc gcattgattc
     3961 gttgaaggag aatcgcggga cgatggcgga accgacgttg ttcactcgga ttatccgagg
     4021 agaagtccca gcgcacatca ttgctcggag tgaatattgg gttgcattcc tcgatattta
     4081 cccccgccgc ccaggccata ctctcgtcgt tcctattgaa ccagtaagcc atctacgtga
     4141 actgagcgcg gaatcaagaa ggcatctttt ggatggtgta attgaagccc aacacatcct
     4201 ctcaaagcga tttgaaacag atgatttcct cgtcggtatt catgacggat ctactgcagg
     4261 acaagaagtt ccccatgtgc atatccatgt aatccctcgg acgttggatg atgggggact
     4321 aactcttctt tcctgttggc cacatgctcc agcacctggt ggcacacctg acttcgaaga
     4381 attacgaaag atggcagagt ctttggaata ttgaggttga attatgtcta caccaagtgg
     4441 tttggatatt gaacggtctt ctgccgctta tgacccagaa gtcgccactt cagcctcatc
     4501 tcgacgccta aatcagcggg gcctcgatag agttcgatgg aggcatgatg gaattcatcc
     4561 agggattccg tgggcttgga aagccctccg aggtatgctc cgcctttcgt ggttcaccca
     4621 atttcgaaat agagagatta gtggtgcaga cacaattgat ccagatcgtg gactggtcgc
     4681 gctcgcctgg catacagccg gtttggtcga tcccatggct atcgttcagt catgtgaaaa
     4741 gcgattcatc atggttggac gccacgattt gatgacccgt ccaattatcg gtcgttgggc
     4801 tcggtcaatt ggctctcaac ctgttttgag gcaacgcgaa atcgatgaag gaacaacaga
     4861 tgcaacattc gctcgtgaga ttaaccatcg tagtttgttg actgtggccc atacaatatc
     4921 tggggggcat ggttgcgtga ttatgccgga aggaacaagc caaatcgaac cgagaatgat
     4981 gccattgaga tccggtccga tgcgtatcgc tctcaatgca gctgcagccg cccaggcaag
     5041 aaaccgccca ctcccctcta ttcgtccagt aggcctccac tttcgagagg catggaagtt
     5101 taggacagat tgttatgttg agtttggtca agagatccca atcgatgata tcgtagatga
     5161 tgaagccgta gattatcttc ttgatggtaa atggaaagaa cccgattttg attcagtcaa
     5221 taccttacga aatagaatca aggaatctct cgatatctta actccagatg cagatgactg
     5281 ggacgaattc cattcttggt cggtgatttc ccacatagaa gcggatgccg aaaagagccc
     5341 ccatgctagt tggtcaagcg aagtacacgg tatccgttcc gttcgtgatc gtattcgttc
     5401 aggtgagctt gattctaaaa tcatggaacc cgcatctcgg attcagagca gtctgaaatc
     5461 gttctcccta gatccacgat ctatcagttc tgaaggggta cgcccacctt ctccaatgac
     5521 ttggcttggt gtaatctggg ggctttctct catgcttttg agtgcgcctc tggcagtatt
     5581 cactttaccc caggcattac ttgcatggta tattggcaat aattctgatg aaggattgga
     5641 tgcacggagc accttccata ttttggcagt caccttctct cctgttctga tttggccata
     5701 ccttggattc gcagcagcaa catctttttt gatggcttat acagacctca tcacatggca
     5761 aattgttgca gcatcaatga tttgcagcat cgttttcatg cctctttttc acattgcgaa
     5821 cttaattttc cttagaggat acgactcctt ctttgacttc tttacctctc tctctcaatc
     5881 acgatttaga cgaagtattg agggaagtag agtaaaagat gatgtgaata caatactcgc
     5941 attcctgaaa taggtcaagg ggaaggcgag gtcatggatg caaaggaagc catcaacctc
     6001 atcgaacact ggcttacaga ggaaggcctc caaagcaaga gcctatctga tgcacgtgca
     6061 caaaaacacc tccatgttcg ttacccacca tctagaaatg gtcacttgtt caacatagta
     6121 atcccaaagg gaagaaacct cgtaatcatt ggttcagtaa ctcgagtaga tgcagctcag
     6181 caagatgaga tgacatctca tgcagaagcg gatccagttg gttgggagga atggttgcat
     6241 agtacacgcc tatccttaat cgggggacag tttgactgga caattcatgt tggcaagaat
     6301 gaaacaccgc aatccggtcc actccaagcg ttcaacatat ctcgcccaat ctggtttgat
     6361 ggactcaatc aacatcgttt tcttgacact cttcgaagga tttggcttag caaattaggc
     6421 gttatccatg agatccgttt tgcatatggt caaggctcag gaaacccagg gcctgtggat
     6481 gattggacta aatcaaacca gggctcagac ggcccaacac cgccagaggt tgagtttcag
     6541 gacggattga gttttggctc ttcgttcgat gttgatgaat gggcatagta tatcgtgacc
     6601 cgaagtggtt tcgcttaagt agtggtggac ttggtatcca agtgttcaac ggtaggtgtg
     6661 ccaagatgac ttacagagca aaaacaaaca gtattctcct gacaattctc atggtcctta
     6721 gcacgactct gattctccca tccgaagagg tcgaagccgc agaggtcgta attactgaag
     6781 cagtccgcgt cgtcgacggc ggaccgatga acgaacgaat ggtatctatg gcggcagaca
     6841 gtgaaggaaa catacacttt gtttggagcc gaaatacaca acatctctac tacactatgc
     6901 ttgaccctcg agcagatgtt gatggtgatg gacaggcaga ccccgtaatc gatgtgaccc
     6961 agatttcgaa tcctggaaca caccgtgctt ggcatccaga cattgcagtc gattcaatgg
     7021 acagagttca tgttacttgg acagataagt ctagtcaaca cgcaatcaag tacaccgtcc
     7081 tcgatccgaa ccttcaccca cgtgacggaa gtcaagcgga tgatacggta atctctgttg
     7141 tcaatgacat gattgtaagc caacgccaac agaatcgtga ttggccagcc atcgctgtcg
     7201 attcacaaga taatgcccac atcgtttggg aggattcctt cgatcctcta gagaagttct
     7261 acttccagcc tcaaatttac tactcaatga ttgaattcga tggttcagta ggcactactg
     7321 ctattgacga ctctatgctt acaccagtca tcggccacaa aggccatcct gatattgctg
     7381 tggacgccga tgattacgtg caggttgtct gggacgatac tcgtggcggt aaggtggaaa
     7441 tggtagttcc aatcgatact tcaggttcca tgtattcgga gtgggcagat gtctgcactg
     7501 tgttttatgg aggtagtttc agcagcggtg gatacttccg cggcatcaag ccaatgttag
     7561 aagatgcaaa catcaccgtc tatgagacga tttacgcaat tctcggatac ggcatcccat
     7621 cagcaggtca gggcaacact tgttcgacag cataccagac tggtgggagc ggttcgcaag
     7681 gccctcgcgc gacgcacctt ggtcaatacc ctggtgacga ctccggcggc attcgcaagc
     7741 tccagaactt cattttcaat ggagcttcag tgacaggatc ttccggtgag gattggggcc
     7801 cttcgtcaac ttgggcctgc ctttcatgga aggatgcagg tggtaacgta cctggaaacc
     7861 cccctactgc ttcggaccat aagtggaatc cgaatgcaac caagattgtc atcccaattt
     7921 ctgatgaggg cccgcggaac ggcgatccag cccagcaatc cgatgatact caaagcatca
     7981 acgaggctca cgacgcgtgt gtccgagctg gagttgtgcc cgttcctatg gcaggtagca
     8041 cctggggtgg tggaacacag attcagtccc acatgtcaga tcttgcgaat tgcccgaatg
     8101 gcgtggtgaa cactaaccaa cgaatttgcc caggttcgac gattcgaaat acagatgcag
     8161 gtggagaagt atacaatttc cctgcatctg gaggcggcgg tcaacagatg caactcttag
     8221 tcgaagcaat ggtgtatctt gcaacaaaca actcccgtga aattttcatg acggttcttg
     8281 ctccacacgc gcttctagac aacccctctc cagggtggca aaagggcgat ccagcaacta
     8341 ccaccacaag cagtgcatac actgaggacg ttggtccagc aatggattct caaggatacg
     8401 gccacttcgt cgttgtgaac gacacccgtg taacccttga tgacgctttc agcttccatc
     8461 cagctattgc tatcgatagt cagggtaaca cccacattgc atggatggac ggccgtggtt
     8521 acggcttcga aaagaatgtg aattacgagg tcctctacac acgtcttcgc cttcgtggcg
     8581 ctgcagaatg gaatggtgtt gaaggcggcc tcccctccta tgggatcaag cagatcgtcg
     8641 atacacggat ttcagatttc gaagggcccg caggcatcca gcaagggaac ccattcgctc
     8701 catcgtccta catgccagca atcttgaccg atgctcgtga taatatccac attacgtggt
     8761 tggaaaacag taactcatct cagggcgagg caatcatgta tgctcgactc aatcatacga
     8821 acgataagcc agcatggcca ttgaattcaa tcgcagcctc tgttctcgat ccatgggaac
     8881 caactgaagt aacaacatgg aactcggata agttgggccc aaattcaggc aatgctcctg
     8941 agctgagtca acccccagcg tttgcaaatg atttgggaag cggcgcccat attgcttggt
     9001 cagatacaaa caaatgcaat gatgagtcga attccaacac atacacactt tgctatgttc
     9061 acgttctaac agggcaagtc gaggttggat tacaggaagg agagacattc taccacgtta
     9121 tcgaacccgg cgaggatacg atgtacaatc tcagcgttaa caatacaact ccgggtccac
     9181 ctgaactcgt tgccgatacg ttttctctga accttacagg cgtaccattg aactggtctg
     9241 caacagttta cttctccagc aaccacacca ctatcttccc agatacgcca atccacctcc
     9301 ttggaggtga gcgtgttgag gtttacatgc gcgtaatcgc accgtctatc tatcaagccg
     9361 atggggatga ggttgcaaac atcattgtct ctgcagtgtc ctacaaagat ccagcaattc
     9421 gaagcgatcg tttgacgagc acgctgatgg acgttgtcca cggtattcag ttagatacaa
     9481 gccatacaca gagtgatgtg gaacaaggtg ggacagcaat tttctcaatt acaatcacta
     9541 ataccggaaa cgtctacgac acgttccaat tctatgatcc gaatagtctt gaaggccaac
     9601 aagaatggct cctaccttac ggttggggtg ttaagttccc gttgagtatt tcacttgagc
     9661 cgggagcttc agtcacgaag aatctcgaag tgaatatccc tacgacacag gaaccaggaa
     9721 cgtgggttat tttcgtcaag ggctggtcta tgggtgaacc cgtcaaatct gtagaaaagg
     9781 ggacatacga tatccttgaa ctttggatca acgtatcgat tcgttcaaca ggaaacatcg
     9841 tcttcgaaat ctttgacact tctgaggaag tgctccctgg cgaatgtgca gagtacgtga
     9901 tcaaggtcac gaaattcttc gcaccaggat acctaatctt cactcttcca ggtgggcccg
     9961 atgaacgcaa cacttcgatt ccaacagaga tttggcgtca ggaccactgg acagtaactc
    10021 tcgatttcct caatgctcca gattatgatg aaaacacaag atatgaacca ggtattgcaa
    10081 ggtattggga tcagacagaa cgtccgtatt cagtgactgc ggaggtatgt gcaccgtacc
    10141 tagcagatgc ggggcttggc cctgcagtga aggtcaaggc gtatctacaa ggctcaccca
    10201 aggtctctga tg
//
LOCUS       DUKB01000046            5863 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_193092, whole genome shotgun sequence.
ACCESSION   DUKB01000046 DUKB01000000
VERSION     DUKB01000046.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5863)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5863)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5863
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_193092"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            51..299
                     /locus_tag="HA345_01710"
     CDS             51..299
                     /locus_tag="HA345_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84104.1"
                     /translation="MSEGSGLNAIFEFNWPEGVNADTVTLVVVHEVVEVGNGPATLSA
                     ISWAVEAPSEDVQGSGWVVLLLIGCAFVSLFLRSRSSF"
     gene            344..625
                     /locus_tag="HA345_01715"
     CDS             344..625
                     /locus_tag="HA345_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84105.1"
                     /translation="MMEEGEHTSSNETPLIAVEWMVEYILEVRGDTPVRSVTVVDATD
                     LDMVRTELYRELTSIYPDASRIDVTVIRMTTVASIEAESLFVDEGAFQP"
     gene            complement(626..1567)
                     /locus_tag="HA345_01720"
     CDS             complement(626..1567)
                     /locus_tag="HA345_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014406328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HIH84106.1"
                     /translation="MVILVTGGAGFVGSHLVDRLVEDGQAVRVFDNFSSGREDFLEHH
                     GDTIQTIVGDLLDLNAVKSAMKGVEMVYHLAANPDIRLGTQVTDTDLKQGTVATYNVL
                     EAMRLEGTKRIAFASSSVVYGEAEVMPTPEDYGPLFPISLYGASKLASEALITSWVGT
                     FGLQAWIFRFANIVGSRGTHGVIFDFIHKLHRDSNRLEVLGNGLQEKSYMEVIDCASA
                     MIHVVKNTENQINCYNLGTKDTCSVRRIAEIVLEETGCKDASIDYTGGDRGWAGDVPR
                     AMLDAQRLFELGFTPSHDSEDAVRLTARVLVEEIGRP"
     gene            1731..2675
                     /locus_tag="HA345_01725"
     CDS             1731..2675
                     /locus_tag="HA345_01725"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HIH84107.1"
                     /translation="MPGLNPASVRTLVGLPMFNEEETVASVVVRCLEHVNDVLCVDDG
                     SSDASSRLAARAGAIVHHHRANRGYGAAIRTIFRIAREMDVDRLVILDSDGQHEPEDL
                     PAVLAELDMDGVDVVIGSRFMQESKRDSMPLYRRLGISMINTASNLTSDLGVKDTQSG
                     FRAFNRRALNLLAFENEGMESTLEVLDQCVEKGLKVNEVPITVRYDVPKSSTYSAFGH
                     GLTVLTYALVSLSHKKPLLVFGLPGIGLLISGTTIGLGMLNTVEEITGGGISLSVGPG
                     LTGAWLAMLGIAMSFTGLVLHGARSLMRRIVLQRVKSF"
     gene            2727..5855
                     /locus_tag="HA345_01730"
     CDS             2727..5855
                     /locus_tag="HA345_01730"
                     /inference="COORDINATES: protein motif:HMM:NF015155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HIH84108.1"
                     /translation="MAEEDDAPPEGFSFPEFLSSIGKWPPFVALIAFLSNARDTFNDA
                     IGSSIGQYRNAAVDMLNRFRISIFSTVYSVILRAPALVIVCLLLMTYPFFLQSMEFQH
                     QINGDVEVYLPDGANSTDLLLEVREQWSTDIVLLYVHTDNAIADADRRGTENVTDQDI
                     LRQISWIEGDDENQGAGGLKRGLDYAKDDRGTEDGVVWILSHSQIIKEANSSAKRFNC
                     ALEKYQIPNIDPEGCPVTSTTPSDGYSIPSDQDTIDRYVENAAPIMRNFVRDTQDPDP
                     TVDEDGDGITDNEGDGIWDTAVVVIGIRFDMNGTEIDGRVDPKDPNSGNRIYDHRAFI
                     EHADNLLEKCGFEPEMDLCRTSYGDALSSMNVSRQGILPRDAITVTGLTPVLHDVSDA
                     VYDELVDRMLPLSVAFVALAMIILHRSPKVVVICGLPIILSLMITFGSTVFLDIMLTP
                     MIISAGPILVGLGVDYALHLVNRIEENRNDMLDEHAQRMFEAEREGKPLDPIDPWDEG
                     LYHQATVNAACTTGNAIMLSALTTIIGFNVLTWTSLVPIKPMRTVGTTLLLGIAITFF
                     LSMIMVPALSYVLRYRKGRSAANDSVWSFIGTIPVRAPGAILVVTLLFSAYGAMILSD
                     ELGKDITGSSDEVPPGLQSYEALAEYSRVFNGGQTNMFIVDAEDRGRVNDTAPIRDLP
                     ILDAIDRIQTQDIDTVDYTTSISLVTILKSIPVTVQDPITETVIFDDTLWGLLHSDCW
                     DNPVSGIECPFLLLTDRETMVNVVFDTLSPEVRSMLMNADSGFGETKTLVYVNQPYIN
                     LGDAGELRRIIDQRLTGTGCEEGSALNCNAVDLDGVENTLLTGSLPVSLDINAGIHEA
                     QSETTLATMMVLLVVMSFLFMSPRLAVFTMTAVGVVVLWQPLLMRGGSVNVNVFTAMI
                     GTIVFGIGVDDSIHIVDRIKDEGETPGGISKSVEKTGQTIFETTATTSAGLAAGLFVS
                     IPGLQNFFVLMMLLIIFALLTSSLLLPSMIVTYRSLLHRLGGNEGSWAGFEVSVVIED
                     KVDGIEASLVDG"
BASE COUNT         1378 a         1312 c         1497 g         1676 t
ORIGIN      
        1 aaataggggg taataagaca atcaagcctc tggcttgggg gggtgttgag atgagtgaag
       61 gttcaggtct taacgccatc tttgaattca attggccaga gggtgtcaat gcggataccg
      121 ttacacttgt tgttgtgcat gaggtcgttg aagtaggaaa tgggcctgct acactttcgg
      181 ctatttcttg ggctgtagag gcgccatctg aggatgtcca agggtccggc tgggtggttt
      241 tgcttctcat tggttgtgct ttcgtgagtt tgttcttacg cagtaggtca tcattctgag
      301 catctgagca atgcattcat atgcttgcat gacgatatta ttcatgatgg aagaaggcga
      361 acacactagc agtaacgaaa ccccattgat tgcagtggag tggatggtag agtacatcct
      421 tgaggttcga ggcgacaccc ctgttcgttc agttacagtg gtcgatgcga ctgatcttga
      481 tatggttcgg acagaattgt atcgggagtt gacgtcgatt tatccggatg cttcgagaat
      541 tgatgtaact gtgattcgta tgacgacagt tgcatcaatc gaggccgagt ctctgttcgt
      601 tgatgagggg gccttccagc cctgattagg gtcgcccgat ctcttcaaca agcacacgcg
      661 cagttaatcg cacggcatcc tcggagtcgt gcgagggcgt gaaccctaat tcgaacaagc
      721 gttgagcatc gagcatcgct cgagggacat ctcctgccca gccacggtcg ccaccagtgt
      781 agtcaattga agcgtcctta catcctgttt cttcaaggac aatctcagca attctacgga
      841 cactgcaggt atctttagtg ccaaggttgt agcaattgat ttgattctca gtgtttttca
      901 ctacatggat cattgcactt gcacaatcga ttacttccat gtacgacttt tcctgaagtc
      961 cattgcctag aacttccaac cggtttgaat cacggtgtaa cttgtggatg aagtcgaaga
     1021 ttacgccatg agtccctcga gacccgacga tgtttgcaaa gcggaaaatc caggcttgga
     1081 gtccgaatgt accaacccat gaggtaatca gggcttcaga ggcgagcttg gatgccccat
     1141 agagggagat tgggaatagg gggccatagt cctctggtgt aggcatgact tcggcctcac
     1201 cgtagacaac actgctgctg gcgaaggcaa tgcgcttcgt tccttcaaga cgcatggcct
     1261 caaggacatt gtaggtggcc acagtgcctt gcttcaggtc tgtatctgtg acttgagtac
     1321 caagccggat atctggattc gctgcgagat gatagaccat ctctactccc ttcattgctg
     1381 atttgactgc attgaggtca aggaggtccc ctacgatagt ttggatagtg tccccatgat
     1441 gttcgagaaa atcttcacgg ccgctggaga agttgtcgaa tacccgaaca gcctggccat
     1501 cctctactaa tcgatcaaca agatgagaac ctacgaagcc agcaccgccc gtgactaaga
     1561 ttaccatgac ttacgctcat aggtcatgtg tcttgagccc atcgtcgagg ttcgatgtgg
     1621 taattgatga cttattgctc acttatcatt ttgaaatgtc tcattatact acagattccg
     1681 tagttgaaat gcctgattgg ttaaatatgg actgtgttcc agtttaacca atgccgggcc
     1741 tcaacccagc ctctgtccgg accctcgttg gtcttccgat gttcaatgag gaggagacgg
     1801 tagcatccgt agtagttcgt tgtcttgaac atgtcaacga tgttttgtgt gtcgatgatg
     1861 ggtcttcaga tgcctcctca aggttggctg cgagagcagg tgcgattgtg catcatcatc
     1921 gtgctaaccg tggctatgga gcagcaatcc ggacgatatt ccgtattgca cgagagatgg
     1981 atgttgatcg tttagtgatt cttgatagtg acggtcagca tgagcctgag gaccttccgg
     2041 cagtgcttgc agaattggat atggatgggg ttgatgttgt cattggttca cgattcatgc
     2101 aggagagtaa gcgagattcc atgcctcttt accgtcgact tggtatatcg atgatcaaca
     2161 ctgcatcaaa cttgacaagc gatctcgggg ttaaggatac acaaagtggc ttccgtgcgt
     2221 tcaatcgtcg tgccctcaat cttcttgctt ttgagaacga gggaatggaa tctactcttg
     2281 aggtccttga tcagtgtgtt gagaaagggc tcaaggtcaa tgaggtgcca atcacggtga
     2341 ggtatgatgt tccaaaatct tccacatact ctgcatttgg gcatgggctg acagttctca
     2401 cctatgctct tgtatctctt tcacacaaga agccacttct cgtattcggt cttcccggaa
     2461 taggtcttct tatctctgga acaaccattg gacttggtat gctcaatact gttgaggaga
     2521 ttactggagg ggggatctcc ctttctgtcg gtcctggctt gacaggtgct tggcttgcaa
     2581 tgcttggtat tgcaatgtct ttcaccggcc tcgtacttca tggagcgagg tctttgatgc
     2641 gccggattgt tctccagcgt gtcaaatcgt tctgattcaa tgaataaacc cgaacggttg
     2701 atgaccggac ttggtgtgac acgtatatgg cggaagaaga cgatgccccc ccagagggtt
     2761 tcagtttccc agagtttctg tctagtatag ggaaatggcc tccattcgta gccctaattg
     2821 ccttcctttc caatgcccgt gacacattca atgatgccat cggatcctct atcggacaat
     2881 atcggaatgc agcagtagat atgctcaata ggttcagaat ctcgatattc agtacggtat
     2941 attctgtaat tcttcgagca cctgcgcttg tgattgtctg cctccttctg atgacctatc
     3001 cgttctttct tcagtcaatg gaatttcagc atcaaatcaa tggagatgta gaagtatact
     3061 tgccggatgg tgcaaattca acagatctcc ttcttgaggt gagagaacag tggtccactg
     3121 acatcgtctt gttgtatgtt catacggaca atgccattgc tgatgcagat cgtcgaggta
     3181 ctgagaacgt tacagatcaa gatatattga gacagattag ctggattgaa ggagatgatg
     3241 aaaaccaagg cgctggaggt ttgaaacggg gtttggatta cgctaaggat gaccgtggaa
     3301 ctgaggatgg tgttgtctgg atactctcac attctcagat tatcaaagag gcgaacagtt
     3361 ctgccaagcg attcaactgt gcattggaga agtatcagat tccaaatatc gatcctgaag
     3421 gatgcccagt cacatctaca actccttctg atggatattc gattccttca gatcaagaca
     3481 caatcgatcg atacgttgag aatgcagccc caatcatgag gaatttcgtt cgtgatacgc
     3541 aggaccccga tcctactgtg gacgaggacg gagacggaat cacggataac gaaggtgatg
     3601 ggatttggga tacggctgtt gtggtcattg gtatccgttt tgatatgaat gggacggaga
     3661 ttgatggtag ggttgatccc aaggatccaa acagtgggaa tcggatttat gatcatcggg
     3721 cctttatcga gcatgccgat aatttacttg agaagtgtgg ctttgagccc gagatggatc
     3781 tttgcagaac ctcctatggg gatgctcttt cttcgatgaa tgttagtcgt caagggattc
     3841 ttccgcgcga tgcaatcaca gtcactggtc taacacctgt actgcacgat gtttcagatg
     3901 ccgtctacga tgaacttgtt gaccgtatgt tgcccctttc tgttgccttc gtagcattgg
     3961 cgatgattat tcttcatcgc agtccaaaag tagtggtaat ttgcggatta ccaatcattc
     4021 tgagtttaat gatcaccttc ggttctacag ttttcctcga tatcatgctc acaccaatga
     4081 ttatctctgc aggtccgatt cttgttggtc tgggtgtgga ttacgcactt catctcgtga
     4141 atcgtatcga agagaatcgg aacgatatgc tggatgagca cgcacaacgt atgtttgaag
     4201 cagagcgtga gggaaaaccc ctcgatccaa ttgatccttg ggatgagggg ttgtatcatc
     4261 aggctactgt gaatgctgcc tgcacaactg ggaatgcgat tatgctgtct gcactaacca
     4321 ccatcatcgg tttcaacgtc cttacctgga cttccttggt tccaatcaaa ccaatgcgta
     4381 ccgtcggaac cacattgtta ctcggcattg cgattacctt cttcctgtca atgatcatgg
     4441 tccctgctct ttcctatgta ctccggtata ggaagggccg tagcgctgcg aatgactctg
     4501 tatggtcctt cattggtacg atacctgtcc gagcaccagg tgctatcctt gttgtgacgt
     4561 tgcttttcag tgcttacggt gctatgattc tcagtgatga gcttggtaag gatatcactg
     4621 gatcctctga tgaggtacca ccaggtctcc aatcctatga ggcgctcgca gaatacagcc
     4681 gtgttttcaa tggaggtcag acgaatatgt tcattgtcga tgcagaggat cgtggccgag
     4741 ttaatgacac cgctccgatt cgggacctac caattcttga tgccattgat cggattcaga
     4801 cacaagatat cgatactgtc gactatacta cctccatttc acttgttaca attttgaaat
     4861 caattccagt gactgtccag gatccaatta cagagacagt catcttcgat gatactctct
     4921 ggggcctcct tcactcagat tgctgggaca atccggtgtc tgggatagag tgcccgttcc
     4981 tcttgttgac agaccgcgag acgatggtta acgtggtctt tgacacactt tctcccgagg
     5041 ttcgttctat gctaatgaac gctgatagtg gattcggtga gacgaagacg cttgtctacg
     5101 tgaatcagcc ttacatcaat ctcggtgatg ccggagaact tcgcagaatt atcgaccaac
     5161 gattgacagg cacgggatgc gaagaagggt ccgcattgaa ctgtaatgca gtagatctgg
     5221 acggggttga aaatacgttg ttaactggtt ctcttccagt ttctctagac attaacgcag
     5281 gtatccacga agctcagagt gagacgacgc ttgctaccat gatggtgctc ctagtcgtca
     5341 tgtctttcct gttcatgtcg cctcgtcttg cggtattcac catgactgcg gttggcgtcg
     5401 tggttctatg gcagccgttg ctgatgcgtg gaggtagtgt gaatgtgaac gtattcactg
     5461 caatgattgg tacaatcgtc tttggcatcg gagttgatga ctcaatccat attgtcgatc
     5521 gaatcaagga cgagggtgaa acaccaggag gtatttccaa gtcggtggag aaaaccggcc
     5581 agaccatctt cgagaccact gccacgacat ccgctggtct tgctgcagga ttatttgtat
     5641 caattcctgg tcttcagaac tttttcgtac tgatgatgct cctcatcatc ttcgctctgt
     5701 tgacatcgtc attgcttctt cctagcatga tagtcaccta ccgttctctt ctgcatagat
     5761 taggtggaaa tgaaggcagc tgggccggat ttgaggtcag tgttgtgatt gaagacaagg
     5821 tggatggaat cgaagcttct ctcgttgatg gttgacactg att
//
LOCUS       DUKB01000047            5617 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_189021, whole genome shotgun sequence.
ACCESSION   DUKB01000047 DUKB01000000
VERSION     DUKB01000047.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5617)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5617)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5617
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_189021"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..635)
                     /locus_tag="HA345_01735"
     CDS             complement(<1..635)
                     /locus_tag="HA345_01735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84109.1"
                     /translation="MALNLNTIRADFPILSRRLEGERKLVYLDNAATEKAPPLQVVGP
                     VGLAAFLRTALILSRTELKRGYRVTELATPAPTGGGAYEGAALCTTAPPVLHPDERAV
                     SEVLAPNDDGMFALELLTGCSLTAAPLAHGSIACVGYRFQEADAPGSIDAQRAAAAAE
                     RDGDDARRICRALRECSLNGAARLALADGSELNVADGFVGAVTRRGRVVVVL"
     gene            complement(677..1780)
                     /locus_tag="HA345_01740"
     CDS             complement(677..1780)
                     /locus_tag="HA345_01740"
                     /inference="COORDINATES: protein motif:HMM:NF013614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84110.1"
                     /translation="MNTSYSENSDTDRAAHIWRYTPWKKAHPTGKISQIPSADSPILS
                     LSMSDGSEVPTGIRVEEATTDDLSRLGHNLDFGDGTAAPTFIAEIAPQIYVLRVDAKT
                     ITEAPVILSVKTSGSTCACRLLLDICERVEIELITVLEGDAEWFGFLREGSFGQASIV
                     NDVVVHVTGKRLLRCDSIRSNRDAQIRAGTVNAASSQAKVDVRHWLPEPGASLQVNGS
                     ILAARKDHLDSHVEILHSGKQTFSRLEWHTACSGQSVTTGTGMLRIDAGAKGGDAGQL
                     FHNLLLSDKAKANSIPELEVMENEVVGCGHGTANGPLDEYQMFYLKARGFDDEQARAA
                     LIAAFLNAPLSNMGSETLHGWLINRIESHLSGL"
     gene            complement(1790..3196)
                     /gene="sufB"
                     /locus_tag="HA345_01745"
     CDS             complement(1790..3196)
                     /gene="sufB"
                     /locus_tag="HA345_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005093523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HIH84111.1"
                     /translation="MTDEARSAVGDYKDGWHDPENATIRFDFGLSEQVVRDISALKNE
                     PEWMTEIRVKAYHHFEKRPMPTWGNMHLLEEIDFDKVCYYLRSSDATEKNWDDVPEDI
                     RNTFDRLGIPQAEQKWLSGVTAQYESEAVYHSIREDLEEQGVIFLDMDSGLREYEGIV
                     KEYFCSVVPYTDNKFSALNTAVWSGGSFIYVPSGVHVELPVQAYFRINAKNMGQFERT
                     LIIADEGSSIHYVEGCTAPTYSTDSLHSAVVELIALPGAHIRYSTVQNWSNNVYNLVT
                     KRGVAHKNATIEWVDGNIGSKLTMKYPAVILKGEGAHAEVISVAYSGEGQHQDAGAKI
                     HHLASNTTSKILSKSISKDGGRGSYRGMVTVSPKAENCKVNVVCDALLLDEDSRSDTY
                     PTMEVGNPSARCEHEASVSKVSDDQLFYLMSRGHTEEEALALIVNGFFEPFTRELPME
                     YAVELNQLMALEMEGSIG"
     gene            complement(3193..3951)
                     /gene="sufC"
                     /locus_tag="HA345_01750"
     CDS             complement(3193..3951)
                     /gene="sufC"
                     /locus_tag="HA345_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018130540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HIH84112.1"
                     /translation="MGEVALLEINELRTSIDDTDILHGINLKIMPGEIHAVMGRNGSG
                     KSTTANVLMGHPDYEVTGGTIHLDGKDLLEMEAHERARSGIFLSFQYPQAVPGLQVGN
                     FLRRSVAAVRGEEAAKGAEFRTTLKEGMNRLGLDRSFLSRYVNDGFSGGEKKRFEILQ
                     MMLLKPRLAILDETDSGLDIDGIRTVAEGIDAAIRGTTSGALIITHYNRILEHVKPDY
                     VHVLINGRIVKSGGPELASELEERGYDWVEGDAE"
     gene            4065..4559
                     /locus_tag="HA345_01755"
     CDS             4065..4559
                     /locus_tag="HA345_01755"
                     /inference="COORDINATES: protein motif:HMM:NF013286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84113.1"
                     /translation="MVERMDDDDITDMYRDQIRLQMHEEVSRRLQEVIDPREDARVLA
                     LSLVQLVEGSDFEVGGDMIHPDLVPALMARLGEVRAALTGHDGAITVREASVDGSTIH
                     LVVGLDGACVACGAAPGTLSGIQNDLLTDSAIQSVQFDEGILESFDGIVREFLIEKSG
                     VIFC"
     gene            complement(4574..>5617)
                     /locus_tag="HA345_01760"
     CDS             complement(4574..>5617)
                     /locus_tag="HA345_01760"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HIH84114.1"
                     /translation="YRACFKPQLPRFFIERLTQPGDAIYDPFMGRGTTPMEAFLLGRR
                     PLGNDINPLSRLLLQPRLNPPTIKEIENRLDKIDLSHAEEEYDGLLAFFHKDTLCEII
                     SLKEYLLKREESGEIDNVDAWIRMVAINRLTGHSEGFFSVYTLPPNQAVTIKRQEKIN
                     ANRNQVPDYKEIKTRIIKKSKSLLKDWKELETPGMDPSCVLTTGDSRFASNIEDNSAQ
                     LVVTSPPFLDVVNYQADNWMRCWFIGIDSSDINISQLKSIKEWEATMTGVLTDLRRIV
                     KPGGHIAFEVGEVRGGKVLLEENVVRCGVMAGLEPIIILINDQEFTKTANAWGIENQS
                     KGTNTNRIVVFEV"
BASE COUNT         1221 a         1422 c         1470 g         1504 t
ORIGIN      
        1 aggacgacga cgacgcggcc ccgcctcgtc acggcgccga caaagccgtc cgccacgttt
       61 agctcggacc cgtccgcgag cgccaggcgc gccgcgccgt tgagcgagca ctctcggagg
      121 gcgcggcaga tgcggcgcgc gtcgtcgccg tctcgctcgg ctgcggcggc ggcgcgctgc
      181 gcgtcgatgg agccgggcgc gtccgcctcc tggaagcggt agccgacgca ggcgatggag
      241 ccgtgcgcca aaggggccgc ggtgagcgaa cagccagtca gcagctcgag ggcgaacatg
      301 ccatcatcat tcggggccag gacctcgctg acggcgcgct cgtccggatg gaggaccggc
      361 ggcgcggtcg tgcatagagc agccccctcg tacgccccgc cgcctgtggg cgccggggtc
      421 gccaattccg tcacgcggta gccgcgcttc agctccgtcc gcgacaggat gagtgccgtc
      481 cgcaggaacg ccgccagacc cacggggccc acaacttgta aaggaggcgc cttctcggtc
      541 gctgcgttat cgaggtagac gagtttccgc tctccttcga gtcgtcggct aaggatgggg
      601 aagtcggccc ttatcgtgtt tagattgagg gccatggccc tcggaagaag tgctttgtct
      661 tcaatccgtg cttccatcaa aggccagata gatgactctc gatacgattg atcaaccaac
      721 cgtgaagagt ttcagagccc atattggaga ggggagcatt caggaatgcg gcgataagtg
      781 cggcacgtgc ttgttcatca tcaaatccac gtgctttgag gtagaacatc tgatactcgt
      841 ctaatggccc gtttgcagtt ccatggccac agccaacgac ttcgttctcc attacttcta
      901 gttcaggaat cgagtttgcc tttgccttat cggagaggag aagattgtgg aatagttgtc
      961 cggcatctcc tccctttgct cccgcatcaa tacgtagcat cccggtacct gttgtgacac
     1021 tttgaccgct acatgcggtg tgccattcaa ggcggctgaa ggtttgctta cctgaatgca
     1081 gtatttctac gtgggaatcg agatggtctt tacgtgctgc aaggatggaa ccgttgactt
     1141 ggagtgatgc acctggctcg gggagccagt gccgaacatc gacctttgct tgtgatgacg
     1201 cagcgttgac agtacctgct cggatctgag catcgcgatt tgagcggatt gaatcacatc
     1261 ttaggagtcg ttttccggtc acatgtacaa caacatcgtt cacgattgat gcctgtccga
     1321 agctaccttc acgaaggaaa ccaaaccact cagcatctcc ttcgagcaca gtgattagtt
     1381 caatctctac gcgttcgcat atgtcgagta ggagtcgaca agcgcaggtt gagccgcttg
     1441 ttttgacgga gaggataacg ggggcttctg tgattgtttt agcatctaca cggaggacgt
     1501 agatctgtgg ggctatctca gcaatgaatg taggagctgc ggttccatca ccgaaatcga
     1561 ggttatgacc taggcgcgat aagtcgtctg tggtcgcctc ttctacacgg atacctgtgg
     1621 gtacctcact accgtcactc atagacagag aaagaatcgg tgaatcggca cttggaatct
     1681 ggctgatttt ccccgtaggg tgtgccttct tccacggtgt gtagcgccaa atgtgcgctg
     1741 cacgatctgt gtccgagttt tctgaatagg atgtattcat gccgatccct caaccaatgc
     1801 tgccttccat ttcaagcgcc attaactggt tgagttccac agcgtactcc atagggagtt
     1861 cacgggtaaa gggttcaaag aaaccattca caatcagtgc cagtgcctct tcttcggtgt
     1921 ggccgcggct catgaggtag aacagttgat cgtcgctcac cttactgact gaggcttcat
     1981 gctcacagcg agcgctaggg tttccaactt ccatggttgg ataggtgtca gaacgactgt
     2041 cttcatcgag gagtagtgcg tcacagacga cgttgacttt gcagttctct gcctttggag
     2101 atacagtgac catgccccga taggaccctc tccctccgtc tttgctaatg ctctttgaga
     2161 gaattttact agtggtattg ctcgctagat ggtgaatttt cgccccagcg tcttggtgtt
     2221 gcccctcgcc agaataggcc acggagatga cttctgcgtg tgctccttct cctttgagta
     2281 tcactgcggg atacttcata gtcaacttcg atccaatgtt accgtcaacc cactcaattg
     2341 tcgcattttt gtgtgctacg ccgcgctttg tgacgaggtt gtacacattg ttcgaccagt
     2401 tctgtactgt tgaataacga atatgcgctc caggtagggc gatgagttcg actactgccg
     2461 agtgtagtga gtccgtggag tatgtgggag cagtgcatcc ctcgacatag tgaatcgacg
     2521 acccttcgtc tgcgataatc agtgttcgtt cgaactgacc catgttcttt gcattgatgc
     2581 gaaaatatgc ttggacaggc aactctacgt ggacgccgct gggcacgtag atgaatgagc
     2641 cacctgacca gaccgcggta ttcagtgcgg agaatttgtt gtctgtatat gggacgacac
     2701 tgcagaagta ttccttcact atgccttcat actccctaag tcctgaatcc atgtcaagga
     2761 agattacgcc ttgctcctca aggtcttcac gtatgctgtg gtacaccgct tcggattcat
     2821 actgcgctgt cactccggat agccactttt gctctgcttg agggatgcca agtcggtcga
     2881 aggtgttccg aatatcttct gggacgtcat cccagttctt ttcggtggca tctgaggatc
     2941 gtaggtaata gcagaccttg tcaaagtcaa tttcttccaa gagatgcatg ttaccccacg
     3001 tgggcatggg ccgcttctcg aagtggtgat atgctttgac ccgaatttca gtcatccact
     3061 ctggctcgtt cttgagagca gaaatatctc gaacaacttg ctcagatagg ccaaaatcga
     3121 agcgaattgt tgcgttttca ggatcatgcc aaccatcctt gtagtcgccg acagctgagc
     3181 gtgcttcgtc agtcattctg catcaccttc tacccagtcg tagccacgct cctccaactc
     3241 ggaggcgagt tccggtccac ctgatttgac gatgcggcca ttaattagaa catgaacata
     3301 atctggcttg acgtgctcaa gaatccggtt gtagtgtgtg atgatgagcg cgccagaggt
     3361 ggtgcctctg attgccgcat caatcccttc tgcgactgtg cggatgccat caatatcgag
     3421 gcctgagtca gtctcatcaa ggattgctaa tcgtggtttg agcaacatca tctggaggat
     3481 ttcaaagcgc ttcttttcgc caccgctgaa tccgtcatta acgtagcgtg agaggaatga
     3541 gcggtctagg ccaagccgat tcatgccttc cttgagcgtg gtgcggaatt ctgcaccctt
     3601 tgctgcctct tcgcccctaa ctgctgccac ggatcggcgt aggaagttgc cgacttggag
     3661 gccggggacg gcctgagggt attggaagga gaggaagatg ccagagcggg cgcgctcatg
     3721 tgcttccatt tcaagaagat ccttgccgtc cagatgtata gtgccgcccg tgacttcgta
     3781 gtcaggatga cccatcagaa cattagctgt agtggactta ccgctgccgt tacgccccat
     3841 tacagcatgg atctctccag gcataatttt caggttgatt ccgtgcagga tgtcagtgtc
     3901 atctatacta gttcgcaact cgttgatttc aagcaatgcc acctctccca tgactctgcc
     3961 tccgagtaac cctccaatac ccgacttatc aatgcctgct tctcattttt agcatgtgaa
     4021 ttaatgtttg aacagattca tgatgggtgt ctgtttggtc tgatttggtg gagcggatgg
     4081 atgatgatga tatcactgac atgtaccgtg accaaatccg tctccagatg catgaggaag
     4141 tgagccgccg ccttcaggag gttattgacc cgcgagagga tgctcgagta ctcgccttat
     4201 cattggttca acttgtggaa ggatcggatt ttgaggttgg aggtgatatg attcatccag
     4261 atctcgttcc cgcgctcatg gcgcgtttag gagaggttcg tgctgctctt accggtcatg
     4321 acggagcaat cactgtccga gaggcaagtg tcgatggatc cactatacat ctcgttgttg
     4381 gcctcgatgg agcttgtgtt gcttgcgggg cagcacctgg aactctatcg ggtatccaga
     4441 acgacttact gaccgattcg gcaattcaat cggttcaatt cgatgagggt attctcgaaa
     4501 gtttcgacgg catagtccga gagtttctga tagagaaaag cggtgttatc ttctgttgac
     4561 atcctgcgca aatctacacc tcaaagacga caattctgtt agtgttggtc cctttggatt
     4621 ggttttcaat accccatgcg ttggctgttt tggtgaattc ttggtcgttg atgaggatga
     4681 taatgggctc cagtccagcc atgactccac aacgaactac attttcttca agcagaactt
     4741 ttcctcctcg gacctctccc acttcaaacg caatgtgtcc tcctggtttc acgattcgac
     4801 gtaaatcagt taacacgccc gtcattgttg cttcccattc tttgatgctt ttcagttgac
     4861 taatgttgat gtctgaggaa tcgataccga tgaaccaaca tcgcatccaa ttgtccgctt
     4921 gatagttcac cacatcgagg aacggagggg atgttacgac gagttgcgca gagttatcct
     4981 caatattcga tgcaaagcga gaatctccag tcgtcaaaac acaggatggg tccatgccag
     5041 gggtttccaa ttccttccaa tccttcagaa gtgattttga tttcttaatt atgcgcgtct
     5101 taatttcttt gtaatctggc acctgatttc gattagcatt gattttttct tgtctcttga
     5161 tagtcacagc ttgatttgga ggaagtgtgt agactgagaa gaatccctcc gaatgacctg
     5221 taagtcgatt gattgcaacc attcgaatcc aagcatcaac attgtcaatt tcacctgatt
     5281 cttcgcgttt taagaggtat tctttcagag agataatttc acacagtgtg tctttgtgga
     5341 agaaggcaag cagcccatca tattcttcct cagcatgaga taagtcgatt ttgtcaagcc
     5401 gattttcaat ctctttgatt gtaggggggt tcaatcgtgg ttgtagtagt aatcgactca
     5461 gtggatttat gtcatttcca agcggccttc ttcctagaag aaaagcctcc attggtgtgg
     5521 ttcctcgccc catgaatgga tcataaatcg catctccagg ttgggttaat cgttcgataa
     5581 agaatcgagg cagttgtggt ttgaaacaag cacgata
//
LOCUS       DUKB01000048            6666 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_227321, whole genome shotgun sequence.
ACCESSION   DUKB01000048 DUKB01000000
VERSION     DUKB01000048.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6666)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6666)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6666
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_227321"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     assembly_gap    159..499
                     /estimated_length=341
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(557..>755)
                     /locus_tag="HA345_01765"
     CDS             complement(557..>755)
                     /locus_tag="HA345_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HIH84115.1"
                     /translation="MSFANQFLSLCRLAANANTMDVAVHDISLEQDLDLAQTKLIAEE
                     IYIDSLSSDQIAYRDSYNEGT"
     assembly_gap    756..1064
                     /estimated_length=309
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1065..2155)
                     /locus_tag="HA345_01770"
     CDS             complement(<1065..2155)
                     /locus_tag="HA345_01770"
                     /EC_number="3.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012845168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HIH84116.1"
                     /translation="MDKSDLYTVADLSLADTGARRVDWARTRMPVLRLLRERAEEEKP
                     LAGMRVAGCLHVTKETAVLIETIAAAGAEVSWSGCNPLSTQDDVAAWLASEGYSIHAW
                     HGQSVEDFYHCIDRTLEFEPTLTLDDGADLIFRVHDARKDMLPSIIGGTEETTTGVHR
                     LRAMADQGALLYPVIAVNDAKTKWDFDNVHGTGQSTLDGILRATSVLLAGKTFVVAGY
                     GHCGRGLAQRARGMGSNVVVTEVDPLAALRAHMDGFRVMPMDEAAEIGDLFCTATGMK
                     DIISKSQFSKMKDGAIVCNTGHYDCEIVIEDLEDLSTSVRTIRDDNEEFTLPDGRRIF
                     LLARGRLVNLAAAEGHPSEVMDMSFANQFL"
     gene            complement(2254..>6666)
                     /locus_tag="HA345_01775"
     CDS             complement(2254..>6666)
                     /locus_tag="HA345_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84117.1"
                     /translation="GYSMVYYSSTGIANRVLYDDSCTIDVWSEADGWASVNYFGGHDN
                     DRVLYIQNGYAPERAVNNNLYYSGTIYNWLNLTGDDAIDLTQWAGEVIDIRFRFRTGF
                     DGSVGTSDETNQTQWDGFAFDNLSIRKTVSSFGASPQVASQTLTLNNFAPGDEEVVTL
                     QANFVNGTTYLIETLITSTTGITNGDITNDDAKFSTLVENLYDPATSEITSLQKGALY
                     AADTYPIDVEVVNRGNTVTDFDVVANVYTAQSSELLTEDFEAGSGGFQFGDDGDNFGV
                     VIDDTAANVQNSLVPQNRPVFEGAAYWFGGPDDGYGQDWNETMNLATIDLTNMQGDFA
                     YLNFDYFAEMEVLEDSNGNVVGWTAETGLETSWRSGSTTYKGVVYGSWNDINENGVLN
                     NQTCEDIDNDGYLDEVETFGDRPDDDNYRVWFDSEGLKKSVTLDLTHVYLLNTTNTNS
                     NLWRTECLSMSGFEVDFTWRFQSDSNGATGANGLAGFGLDNISVTEFTFVPDQIYSTT
                     VTGLDSQEDRVVTVGSHAFTQGIYRIDAISVFDNTTQGTDWYGAQELLLSNNLTRIVF
                     DVASVDVLLRPPDVLSCVEQIIPCSYPIDDAKNHDFSLSLDNGVLAGDYNIKMSIVDT
                     STNTPVTGSPFNSESGLISLTPHERTNVSWIAPFNGWQDETVYNLSFFAELADGTPSG
                     NTHYFNILFEDNIDVAILSAPTDQDRLKTVREDLEAMGMTYTQFKPDDWATYVNSDWI
                     DPLKYNKVLLPWQTENNVLNGNYYSRLALGIGGNPSPTTVLTSYMNGGGTVQMHLGPY
                     ADSPHNAYLNNKLPFGIEVQDRDTTSNPQVTYNDMTILDPYHNMMEDIVPSSFVGVNS
                     GNYVSNAVINTGQTGNDQMPYICGGPITNPRTGFDTSFHNIIQGPESSMSLLATCGYG
                     SGDLIVTTIDVENEAVTNKFGDTTFPILSNLLSYQMMPYPSGFGIAGGDDWDLLINGE
                     APDWDTVNGNYQRMYLKSSAELDFSFESTVSGLDANWEIRSGDSFDVTKWDGGVLPAG
                     QFDHTPDDSHTASFCVLDTSSSTNCKTDASWIVTIFLHDSAGHVRKASIELVTNDIQA
                     DEDRPLAHFSVVDRLDTDAYITPLDTYEVNGEQWMFFEIRCPGDETDPCERRVYFDAS
                     LSEDNDSTDGTKGITEYEWRVYSDRYYNQLPGSPYHEYIRGTDSFSYAFKNVTVNPSG
                     QNNGTPIRIDLTVQDRANKDSEKYRMFFQVVPDSFGDAAAEVSITSPTAGDTQSGAFV
                     WINGSVTGGVEEGDLSIYVALSGSDLNLTPTQQFARAQAMKFNSSSNLANGADFSLTL
                     SIEDLYLEGQGVSQTVYIKIQEGNDGEPIYQQIQINLIPLDTTDPCVADPNAEGCENN
                     TDGENTESGGDSNLLIIVAIVFVVLLGIVFATVLLVRGRGSSDTDSGMGEVTFGGVET
                     MDPKEAYVQQLIAQGYPEETARAYAEQYASHFQQ"
BASE COUNT         1624 a         1486 c         1388 g         1518 t
ORIGIN      
        1 attaactcgc gcgattaatg ctgagctttc tagcggtcta ctctgtatcc ctaatgaata
       61 tcgagagagt cgcctatacc gtgcacttcg agatagacgc tcgatttcgt ctatggaacg
      121 actcggtcgc attgtagaaa atggggaacg aatgagtcnn nnnnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnng aaatggactt tcactctacc aaaatgggct gagttcgaag
      541 aagaatgaat cctcgattag gttccttcgt tgtaggaatc gcggtaagca atctgatctg
      601 aactaagaga atcaatgtaa atctcctcag caatcaattt cgtctgagcg agatcaagat
      661 cctgttccaa tgagatatca tggacagcca catccatcgt atttgcattc gctgcaagac
      721 gacacaatga gaggaattgg tttgcaaagg acatannnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaggaat tggtttgcaa
     1081 aggacatatc cataacttct gatggatggc cttcggcggc agcgaggtta acgagacgac
     1141 ctcgtgcaag aaggaaaata cggcggccat cgggaagagt gaattcttca ttatcatcac
     1201 ggatggttcg gacagatgta gaaagatctt ccaaatcctc aatcacaatt tcacagtcgt
     1261 aatgacctgt attacaaaca attgcaccat ccttcatctt tgagaactgg gatttagaaa
     1321 tgatatcctt cattccagtt gcagtacaga agaggtctcc aatctctgca gcttcatcca
     1381 taggcataac acggaatcca tccatatgcg cgcgaagtgc tgctaacgga tctacctctg
     1441 tcacaactac gttggatccc atgcctcgag cccgctgagc aaggcctcgg ccacagtggc
     1501 cataccctgc gacaacaaac gttttcccag ccaataggac actggtagcc ctcaagattc
     1561 catctaaagt tgattgccca gtcccatgga cattatcgaa atcccacttg gtcttcgcat
     1621 cattaaccgc aatcacgggg taaaggagtg caccctgatc agccatagct cgaagtcgat
     1681 ggaccccagt ggttgtctcc tcggttccac caataatcga aggaagcatg tcctttcgcg
     1741 catcgtgaac acggaaaata aggtcagcac catcgtcgag agttaatgtt ggttcaaact
     1801 caagagttcg atcgatgcag tggtaaaagt cctctactga ctgaccatgc caggcatgaa
     1861 tgctgtagcc ctcagatgct agccatgctg caacatcgtc ctgagtactg agtggattac
     1921 atcctgacca cgaaacttcg gcgcctgctg cagcaatcgt ctcgataaga acagcagtct
     1981 ccttggtgac atgaagacaa ccagctacac gcatccctgc gagaggtttc tcctcttcag
     2041 cacgctcacg gaggaggcga agaactggca tccttgttcg agcccaatcg acacgcctcg
     2101 cgccagtgtc agctagagaa agatcggcaa ctgtatacaa gtcgctcttg tccatgttgt
     2161 ggcctccaaa ctctcgttca ttagttctcc gtcctacatc aacagcctaa cggctgcgga
     2221 attggcccca aggggccacg taaactaggt tcgtcactgt tggaaatgtg acgcatactg
     2281 ttcagcatag gctctggccg tctcctctgg atagccctga gcaatcaatt gctggacata
     2341 ggcctccttc ggatccatgg tctcgacgcc accaaaggtg acctctccca ttccggaatc
     2401 ggtatctgaa ctgccacgtc cacggacaag aagcaccgtt gcgaatacga tgcccaatag
     2461 aacgacaaag acgattgcaa caattatcag gaggttcgag tcaccacctg attcagtatt
     2521 ctcaccatcg gtattgttct cacaaccctc tgcattcgga tccgctacac aaggatcagt
     2581 tgtgtctaat ggaatcagat taatctgaat ctgttggtaa ataggctcgc catcgttacc
     2641 ttcctgaatc ttgatgtaaa ccgtctggga cacaccttgg ccctccaagt aaagatcctc
     2701 gatgctgagt gtcaggctga aatcagcacc attcgcgagg ttgctagatg agttgaactt
     2761 cattgcttgt gctcttgcga attgttgagt tggtgtcaaa ttcagatcgc ttcctgagag
     2821 tgccacataa atcgacaaat caccctcttc gacaccacct gtcacactac cgttaatcca
     2881 tacgaaggca ccagattgcg tatctcctgc cgtcggactc gtgatagata cctcggccgc
     2941 agcatcacca aagctatcgg gtacaacttg gaagaacatt cgatacttct cagagtcctt
     3001 gtttgctcgg tcctgaacag tcaggtcaat tcgaatcgga gtgccgttat tctggccgct
     3061 tgggttaacg gtcacattct tgaacgcata cgagaaggaa tccgttccac ggatgtactc
     3121 gtgatatggt gagccaggta actggttgta gtaacggtca gagtatactc gccactcata
     3181 ctcagtgata ccttttgtcc catcagtaga atcgttgtct tcactcaggg atgcatcgaa
     3241 gtatactcga cgctcacacg gatctgtttc atcaccaggg caacgaatct caaagaacat
     3301 ccactgttct ccatttactt cgtaagtatc caaaggagtg atgtatgcat ctgtatcaag
     3361 cctgtcaaca accgagaagt gagcaagagg tcgatcctcg tctgcctgaa tatcgttggt
     3421 aacaagttcg atgctcgcct tgcggacatg acctgctgaa tcatggagga atattgtcac
     3481 aatccacgag gcatccgtct tacaattcgt tgatgacgat gtgtctagga cacagaaaga
     3541 tgcagtgtgt gaatcatcag gggtatgatc aaactggcca gcaggtagaa ctccaccgtc
     3601 ccattttgtt acatcgaaag aatcgcctga acgaatctcc cagttcgcat caagaccaga
     3661 tacggtcgat tcaaaggaga agtcaagctc tgctgatgac ttcagataca ttcgctgata
     3721 gtttccgtta actgtatccc aatcaggcgc ttcaccatta atcagtaaat cccaatcatc
     3781 tccaccagca attccaaacc cagatgggta aggcatcatc tgatatgaaa gcaaattact
     3841 caggattggg aaagtggtat caccaaactt gttggtaact gcctcattct cgacgtcaat
     3901 agtggtgaca atcagatctc ctgatccata tccacaggtt gccaagaggg acatagacga
     3961 ctcaggtccc tggattatgt tgtggaaaga tgtatcaaaa ccagttcgtg gattcgtaat
     4021 cgggcctcca caaatgtatg gcatctgatc gttacccgtc tgtccggtgt tgattacagc
     4081 gtttgagaca taatttccgc tgttaacacc aacaaatgaa gatggaacaa tgtcctccat
     4141 catattgtga tatggatcga gaatcgtcat gtcattgtat gtgacctgag ggttagacgt
     4201 tgtgtcacga tcctgaacct caattccgaa aggcaacttg ttgttgaggt aagcattgtg
     4261 cggagaatca gcatacgggc cgagatgcat ctgcacagtg ccgccaccat tcatgtaact
     4321 cgtcaagacc gtagttggtg aaggattacc accaataccc agtgcgaggc gactgtagta
     4381 attcccgttc agaacgttat tttcagtctg ccacgggagt aggaccttgt tatacttcaa
     4441 tggatcaatc cagtccgagt tcacataggt agcccagtcg tccggcttga actgagtgta
     4501 agtcataccc attgcttcaa gatcctcacg gaccgtcttc aatcgatcct ggtcagtagg
     4561 tgcagagagg attgcgacat cgatgttatc ctcaaagagg atattgaagt aatgcgtatt
     4621 tccagaagga gtgccgtcag caagttctgc aaagaacgag aggttgtaga cagtttcatc
     4681 ttgccaacca ttgaatggag caatccacga gacattcgtt ctttcatgag gagtcaggct
     4741 aatcagtcca gattcagagt tgaatggaga accagtgaca ggagtgttag tagaggtgtc
     4801 gacaatggac atcttgatgt tataatcgcc agccagtaca ccattatcta ggctgaggct
     4861 gaaatcgtgg ttcttagcat catcaattgg gtaactgcat gggataatct gctcgacgca
     4921 agataggaca tctggcggcc ggagaagaac atcaacagaa gctacatcaa acacaattcg
     4981 agtgaggtta ttcgatagga ggagttcctg agcaccatac caatcggtcc cctgagttgt
     5041 attatcgaag acactgatcg catcaatcct gtaaattccc tgagtgaaag cgtgactgcc
     5101 taccgtcacg acgcgatcct cctgagaatc aagtcctgtt acagtagtgg agtatatttg
     5161 atctggcaca aaggtaaact cagtcacact gatattgtct aatccaaacc ctgcgagacc
     5221 gttggcacca gtcgcaccat tagaatcaga ctggaatcgc cacgtaaagt cgacctcaaa
     5281 accactcatt gacaggcatt cagtgcgcca caaattcgag tttgtattgg tagtattcag
     5341 taggtagacg tgagtgagat ccaacgttac ggacttcttg agtccctcgg aatcgaacca
     5401 tactcgataa ttatcatcgt ctgggcgatc gccgaaagtt tcgacttcat cgaggtagcc
     5461 atcattatcg atatcctcac aggtctgatt attcaggacg ccattctcgt tgatatcgtt
     5521 ccaagagccg tatactacac ccttgtaagt ggtacttcca gagcgccagg atgtttcaag
     5581 tcctgtctca gcagtccaac caacgacatt tccgtttgaa tcctcgagga cctccatctc
     5641 agcaaagtag tcgaaattga ggtatgcaaa gtcaccctgc atattcgtta gatcgatagt
     5701 agcgagattc atcgtctcgt tccagtcctg gccgtatcca tcgtcggggc cgccgaacca
     5761 ataggctgca ccttcgaaga ccgggcgatt ctgtggaaca agagagtttt gcacattagc
     5821 tgcagtatca tcaatgacta ctccgaagtt atctccgtca tcaccgaact ggaaaccacc
     5881 agaacctgcc tcaaagtcct cagtcagaag ctcagaactc tgggcagtgt agacattggc
     5941 gactacatcg aagtcagtca cggtattccc gcggttgacg acttccacat cgattggata
     6001 ggtatcagca gcgtacagag cacccttctg gagtgaagtg atttcacttg ttgcggggtc
     6061 atacaaattc tcaacaagag tactgaattt cgcatcgtcg ttcgttatgt caccgttcgt
     6121 gatacctgtt gtggaagtga tcaaggtctc aatcaagtaa gtagtcccgt taacgaagtt
     6181 cgcttggagg gtaaccactt cctcatcgcc tggagcgaag ttgttgagag ttagtgtttg
     6241 agatgcgacc tgagggctag caccgaatga agaaacagtc ttgcgaatcg ataggttgtc
     6301 gaaggcaaag ccgtcccatt gggtctgatt tgtctcatca ctagttccca cggaaccatc
     6361 gaaaccagta cggaagcgga agcgaatatc aatcacttca cctgcccact gggttaggtc
     6421 aatcgcatcg tctccggtga gattcaacca gttgtatatg gtgcctgagt agtacagatt
     6481 attgttcact gcgcgctcag gggcatagcc attctgaatg tatagaacac gatcattatc
     6541 gtggccacca aagtagttga cacttgccca cccatctgcc tcggaccata catcgattgt
     6601 gcaggaatca tcgtagagta cacggttagc aataccggta ctgctgtagt agaccatcga
     6661 gtaacc
//
LOCUS       DUKB01000049            8535 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_90343, whole genome shotgun sequence.
ACCESSION   DUKB01000049 DUKB01000000
VERSION     DUKB01000049.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8535)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8535)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8535
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_90343"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..693)
                     /locus_tag="HA345_01780"
     CDS             complement(<1..693)
                     /locus_tag="HA345_01780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84118.1"
                     /translation="MREHAIVLVALFLTSITVPLAMAQDFEDPKTEPVFETYSGAVQR
                     AFYQVEAAESQTDLGAPEEWLVLTTLDPLLVQKYTRADVDIRMAPFLDGAWIWSFSEP
                     VEGASILEGLENRGIIERSLPQREKVMQPRAVLNDPEMNAQWHLVNTGQNSGTIGEDA
                     NVTAAWDIADGTGAQISIIDDGFAHSHTDLSPGYQSGDSYDYCSNDGDPSPSSGDGHG
                     TSAAGVAGGRGNN"
     gene            complement(731..1987)
                     /locus_tag="HA345_01785"
     CDS             complement(731..1987)
                     /locus_tag="HA345_01785"
                     /inference="COORDINATES: protein motif:HMM:NF012885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HIH84119.1"
                     /translation="MNEKDLIYDWNLIQHSFTRDEASHPHPIWFDDETLRDGLQSPSA
                     RNPRIEEKIELLDYMENLGIQKVDLGLPGAGPLHIDHIDAMLSHINKKDYEIRPGCAV
                     RTVVSDIEPLVDLQAKHEMQIQASAFLGTSPIRQYTENWTMDRIISTAEKAIGFAVDN
                     DIPVMFVTEDTTRSKPEDIKAVYTRALELGADRLCVCDTCGHVTPNGVEQLLRFVQDE
                     VIPDAGFKRRDIEVNWHGHQDRGLGVANNIAAYYAGADVIHGTALGVGERAGNAPIDQ
                     TLVNLKLMGAIDNDLTTLNEYMRKANEYVEVALPRNYPVFGQDAFETGTGVHASAVVK
                     AMKKGDHWLADRIYSGVPAQDFGLEQIIRIGHMSGRSNIIYWLERNGFEATDGLVAHL
                     FDLAKSQRRLMSDEEVNQAVQTFIGS"
     gene            complement(2038..3096)
                     /locus_tag="HA345_01790"
     CDS             complement(2038..3096)
                     /locus_tag="HA345_01790"
                     /inference="COORDINATES: protein motif:HMM:NF003349.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HIH84120.1"
                     /translation="MAEVATGARAYVTLMKPGVLILLQITALCAVLIHDAQIWRETGD
                     WNLFHTGQVMIVVIVGGMLTAGGANAINMWYDRDIDPGMKRTINRPVPAGTVSPNQAL
                     WFGISISVLGVAWFMAMSNAVTAFWAGFSILFYVFIYTMWLKRTSTQNIVIGGIAGAT
                     PPLIGWAAATPATELSITNPFFLGEPLPWLMFALIFLWTPPHFWALALYRSSEYEKVG
                     VPMMPWVKGPERTLLEMKVYALLLIGIAAMPWLRNEAVGNEGGLIWTIIAFSLGFWYF
                     QTVLRIDPKEEFDEKGRLPTALRSFKASLYYLALMFIGLVVTALNTWAAIVFLALLGG
                     NLARTMIKKEDIETTTLS"
     gene            complement(3154..4182)
                     /locus_tag="HA345_01795"
     CDS             complement(3154..4182)
                     /locus_tag="HA345_01795"
                     /inference="COORDINATES: protein motif:HMM:NF014665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84121.1"
                     /translation="MAQWKGPWHLLPVALIFVAALVIAVGGIIRIYDAGESCPDWPTC
                     FGTWGFDVSPAEQATWWENNPEEIDSRGADHRYTTFEIFTEWIHRAIAGALLGPLIIL
                     QYLIVRAQREDLSNRTHTLAALSLILVIWQGFLGYITVKWDNEHWSVALHLASALIFT
                     LALIGLWISWRKDNGNRWEVNAGPRTQAHLRLSALSTLIVLFVGAFVSTTEDANVACG
                     VSGFPDSWPLCSGGIGVLVQDVIAQSQFIHRWLVLIVGIILLRIWITRSEWAPDILTH
                     RLMSWGAGLYGLNVLLGGAYVLSWTANSGFIEWISVLHLLFASVIFLIFSSAILMIRI
                     DASNNEEE"
     gene            4218..5204
                     /locus_tag="HA345_01800"
     CDS             4218..5204
                     /locus_tag="HA345_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84122.1"
                     /translation="MVRMRMSHHWWRGVLLAVLVALTPVVGSTPVDITGPLDTTTPGV
                     VLDVLILDIEANATNGTGDSLRRPPFLVELHTATWCIPCRTAETEVAELEAVWSSVAI
                     LRHHSSDLDILSVEASNQTKQNQGIRGYPSIVVEGRWILNGSSQSIDFEDFIANMTSA
                     GLTRNTTPDANWINGWSYSDGVMDVDFEVGMDDVQVDVYLLMNGVNGRELGILPDTVV
                     AGVTDVDLSQGSTASLNLSGASISVTNDPGRIVLVVRNPGPAILTPASDIFVSSDYQS
                     VPPSPSGGSFAVSNPFLFWFALLGGIAFMLPALQHTVPTLFRKRRLKIGEEE"
     gene            complement(5214..5453)
                     /locus_tag="HA345_01805"
     CDS             complement(5214..5453)
                     /locus_tag="HA345_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014734616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HIH84123.1"
                     /translation="MRSHTRFEKARIIGARALQISMGAPIHVTEEDLREAFKDELIQL
                     YGVEEANTRFVLDPQKIAMLEYERNLLPMDVVPHD"
     gene            complement(5533..6723)
                     /locus_tag="HA345_01810"
     CDS             complement(5533..6723)
                     /locus_tag="HA345_01810"
                     /inference="COORDINATES: protein motif:HMM:TIGR01930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HIH84124.1"
                     /translation="MGTPVICAVARTPIGKYRGVFSQMSAVDLGIVAVRSVLERAGIN
                     PMENIIDDVLMGQVIQAGAGQNPARQVALGAGLPASTPCATINKVCGSSLKALMIAAT
                     AIRAGEHRAVIAGGMESMTNAPHLVRNYHKGTEIDVDTIVHSMVYDGLWDIYNDIHMG
                     NTGELIADECNISRIEMDTFAARSQKLAATARDSGWFDWEIVPVDAPQSDGSLKNVIH
                     DEGIRDSTNVETLAGLRTVFKKNGTVTAGNASTLNDGGSAVLVADESFAMEQGWPILA
                     RIIDQYTSGVEPARVMYAPIPAIQALLERNELGVEDVDVYEHNEAFAAASCAVAKEVS
                     IPEARFNLHGGAVSLGHPLGASGTRCLMTMLGVLRRTGGSTGIVTLCLGGGNAVAMLI
                     ERVE"
     gene            complement(6791..7858)
                     /locus_tag="HA345_01815"
     CDS             complement(6791..7858)
                     /locus_tag="HA345_01815"
                     /inference="COORDINATES: protein motif:HMM:NF015272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HIH84125.1"
                     /translation="MSGGPQRSLSYGEYLSLTELLALQRDGDVSADEMHFIVVHQTFE
                     LWFKQVIRELAESRDVLDTESVAEEAIPMVVHRLGRVTEIFRLMSQQWSVMETLSPQD
                     FLAFRDGLGSASGFESAQMRELEILIGLQDDHRNRGMDPLKRFIQMAETSEQGKVDLE
                     RLRSRMDEISLWDTARNWLGRTPIDGSTPDSTNDAEVVQSYVEAHIAALEQHGSEMAE
                     RMSEWGMGDSDAMKARFAAVAKGARDFLMPNGEVDRPRAGLLFIESHRDLPLLAWPRT
                     LIDRMIELEESMVKWRHSHARMVERIIGRRIGTGGSSGVDYLDATTTYRVFTDLWAVR
                     TILVKSELRPQIRDPEFYGFA"
     gene            7959..>8535
                     /locus_tag="HA345_01820"
     CDS             7959..>8535
                     /locus_tag="HA345_01820"
                     /inference="COORDINATES: protein motif:HMM:NF018548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1246 domain-containing protein"
                     /protein_id="HIH84126.1"
                     /translation="MAGDALPVAEWLSDYDVSQITIGVVASHSSLQILHGARQEGFRT
                     LGICVGEARRKMYSAFPGAEPDEWLILDNYKQMMDYADYLRERNVIIIPHGSLVEYLG
                     PKNFQALSVPTFGNRNILEWEGSRERQRLWLESGGCSMPRVIEDPKDIDGPVIVKYAG
                     AKGGRGYFVARDFRDFRRNVDLEEDFTIQEYV"
BASE COUNT         2056 a         2134 c         2129 g         2216 t
ORIGIN      
        1 gttgtttcct ctccctcccg ccactccagc tgccgaggta ccatgtccat cgccagaaga
       61 cggactggga tctccgtcat tgctgcagta gtcatatgag tccccacttt ggtatcctgg
      121 agataggtcg gtatggctat gcgcaaatcc atcatctatg attgatatct gggcacctgt
      181 gccatcagcg atatcccatg ccgcagtcac gtttgcatct tcaccaatgg tcccactatt
      241 ttgtcctgta ttgacaaggt gccattgtgc attcatctca ggatcattga gtacagctcg
      301 tggttgcatc actttctctc gttgaggcag actacgctca atgattcctc gattttctaa
      361 cccttctaga attgacgcgc cctctactgg ctcagagaat gaccaaatcc atgctccatc
      421 gaggaacgga gccatacgaa tatcaacatc agcacgggtg tatttctgaa cgagaagagg
      481 gtctaatgtt gtcaaaacaa gccattcctc tggtgcccct aaatccgtct gtgattccgc
      541 tgcttccact tggtagaagg cacgctgaac ggcgccgctg taggtttcaa agactggctc
      601 agtctttggg tcttcgaaat cttgagccat tgcaagggga acggtgatgg aggtcaggaa
      661 aagcgcgact aggacaatag cgtgctcgcg catgaatcat gattgtccat ggaacgtcat
      721 agtgctttgc tcaagacccg atgaaggttt gaactgcttg attgacttct tcatcgctca
      781 tcaagcgtct ttgggatttg gctaaatcaa agagatgggc gactaatcca tcggtagcct
      841 cgaagccatt tcgttcaagc cagtagatga tattagagcg gccagacatg tggccaatgc
      901 gaattatctg ctccaatcca aagtcttgag ccgggactcc gctatagatc cggtctgcca
      961 gccagtgatc tccctttttc atcgctttca cgaccgcgct tgcgtggact ccagttccgg
     1021 tttcgaaggc gtcttgacca aatactggat aattacgtgg cagtgcgact tcgacgtatt
     1081 cgttggcttt gcgcatatat tcgtttaatg tggtcaagtc gttgtcgatt gcacccatta
     1141 gtttgagatt cacgagtgtc tgatcaattg gtgcgtttcc agcacgctca cctacaccaa
     1201 gagcggtccc gtggattacg tctgctcccg cgtaataggc tgcaatatta ttcgcaacgc
     1261 ctagtcctcg atcttgatgt ccatgccagt taacttcgat atcccgtcgc ttgaaacctg
     1321 catctgggat gacctcatcc tgaacgaaac gaagtaattg ctctacaccg ttcggcgtaa
     1381 cgtggccaca tgtatcgcag acacagagcc gatcagcacc caattccaaa gctctggtgt
     1441 agaccgcttt gatatcctct ggcttcgaac gtgttgtatc ctcggttacg aacattacag
     1501 gaatgtcatt gtctactgcg aatccaatcg ccttctcagc agttgagatg atacgatcca
     1561 ttgtccagtt ttcggtatac tgtcgaatcg gacttgttcc aaggaaggca cttgcttgaa
     1621 tctgcatctc gtgtttcgcc tgtaaatcaa cgagcggttc gatgtcactg actacagtgc
     1681 gaactgcaca acctggacgt atttcgtaat ccttcttgtt gatgtgtgat agcattgcat
     1741 cgatatgatc gatgtgtagg gggccagcac cgggaaggcc aagatccacc ttctggatac
     1801 caagattttc catataatcg aggagttcta tcttctcctc gattcttggg ttgcgtgcag
     1861 atgggctttg tagtccatct ctcaaggtct catcatcgaa ccaaattggg tgagggtgag
     1921 aggcttcatc tctcgtgaaa gagtgttgga tgagattcca gtcgtagatg aggtccttct
     1981 cgttcacgtg gtcgcctcct gtggaagaga agcaaggatt gcgtatgaat cccccgctta
     2041 ggagagggta gtggtttcaa tgtcctcttt ctttatcatg gtccttgcga gattcccgcc
     2101 tagcaacgcg aggaagacaa tcgcagccca ggtgttcaag gcagtcacca cgaggccgat
     2161 gaacatcagg gcaagatagt acagtgaggc tttgaatgag cgcagagcag taggcaaacg
     2221 ccccttttca tcgaattctt ccttgggatc aatccggagg actgtctgga agtaccagaa
     2281 tccaaggctg aatgcgataa tagtccagat gagtcctcct tcattgccca cggcttcgtt
     2341 tcgaagccaa ggcatggctg caatcccaat gagtaggagg gcgtagacct tcatctcaag
     2401 gagcgtccgt tcaggcccct tgacccaagg catcattggt acacctacct tttcatactc
     2461 agatgagcga tatagtgcga gtgcccagaa gtggggtggt gtccaaagga agatgagtgc
     2521 aaacatcagc cacggaagtg gctcaccgag aaagaatgga tttgtgattg agagttcagt
     2581 ggcaggagta gctgccgccc aaccgattag tgggggtgtg gctccagcaa ttccaccaat
     2641 gacgatgttc tgagtagagg ttcgctttag ccacatagtg tatatgaata cgtagaagag
     2701 gatactgaat cctgcccaga acgcagtgac tgcatttgac atcgccatga accatgccac
     2761 accgagaacg gagatactga tgccgaacca gagggcttga ttcgggctga cagttccggc
     2821 aggaactggc cgattgattg tccgtttcat tccaggatcg atgtcacgat cgtaccacat
     2881 attgatcgca tttgcaccac cagcggtcag cattccgccg acgatgacta cgatcatcac
     2941 ttgacccgta tgaaacaaat tccaatcccc ggtctcacgc cagatttgag cgtcatgaat
     3001 caacactgca cataaagcag taatttggag gaggattagt acacccggct tcatgagggt
     3061 aacataggcc ctcgcaccag tcgctacctc tgccatgtta ctccaccatt tgattcgacc
     3121 attgaaggtt gggtgtagag tttcagtttc ccttcattcc tcttcattat tcgatgcgtc
     3181 gattcggatc atcagaatcg cggatgaaaa tatgaggaaa atcacagatg caaagagaag
     3241 gtgtaggaca gaaatccatt ctataaatcc tgaatttgca gtccatgaga gcacataggc
     3301 tccaccgaga agcacattca atccatagag tccagctccc catgacataa gccggtgagt
     3361 aaggatatca ggcgcccatt ccgagcgtgt tatccatatt ctgaggagta ttattccaac
     3421 aattaggacc aaccatcgat gaatgaattg tgattgtgca attacatctt gcaccaaaac
     3481 tccgatacct ccgctgcata gtggccaaga gtccgggaat cccgaaactc cacaggcgac
     3541 atttgcatct tcagtggtgg agacaaaggc gcccacaaag agcacgatga gagttgatag
     3601 ggcactaagt cgaagatgcg cctgtgttcg tggaccggca ttcacctccc atctatttcc
     3661 gttgtccttc ctccaagaaa tccagagtcc aatcagggcc agtgtgaata ttagtgcgga
     3721 ggcaaggtgt agagccactg accagtgctc attatcccat ttcacagtga tataaccaag
     3781 gaaaccctgc cagatgacta gaatgagtga gagggctgca agtgtgtggg ttcgattaga
     3841 gaggtcttca cgctgtgctc ggacaataag atactgcagg ataatcagtg gcccaagtag
     3901 ggcacctgca atggcgcgat ggatccattc agtgaatatt tcgaatgttg tgtatctatg
     3961 atcggctcct cgagaatcaa tttcctcagg attattttcc caccaagtgg cttgttctgc
     4021 gggtgataca tcgaagcccc atgtaccgaa gcatgtgggc caatctggac aggattcacc
     4081 agcatcatag atacggatga tacctccaac cgctatgact aacgctgcga caaagatgag
     4141 tgctaccgga agtagatgcc atggcccttt ccattgtgcc atgacaagcg catgggtgtg
     4201 gggtatttca acgcctgatg gttcgtatgc gcatgtccca ccattggtgg cgcggtgtac
     4261 tgcttgccgt gcttgtggct ttgaccccag tcgtgggttc aacccctgtc gatattacgg
     4321 gcccactaga tacgaccact cccggagttg tcctcgatgt attgattctt gatatcgagg
     4381 ccaatgctac gaatggtacc ggggattctc ttcgtcgtcc gccgttccta gttgaattac
     4441 atacagcaac atggtgtatc ccctgtcgca ccgcggaaac agaggtagca gaattggagg
     4501 cggtatggtc cagcgttgca atccttcgtc atcactcatc tgatcttgac attctatctg
     4561 tggaggcaag taatcagaca aagcagaatc aaggtattcg cggttacccc agcatagttg
     4621 ttgaaggtcg ttggattctc aacggttcta gtcagagcat agacttcgaa gatttcattg
     4681 caaacatgac ttcggcggga ttgacgagga acacgacacc agatgccaat tggatcaacg
     4741 gatggagcta cagcgatggt gtgatggatg tagattttga agttggtatg gatgatgtcc
     4801 aagttgatgt ctatctcctg atgaatggtg taaatggaag agaattagga atccttcctg
     4861 atactgttgt agcaggagta acggatgttg atttgagtca aggttctacg gcgagcctca
     4921 acctcagtgg tgcttcaatt agcgtaacca atgaccctgg acgtattgta ctcgtagtgc
     4981 gtaaccctgg gcctgcaatt ctgacaccag cgtctgatat attcgtctct agtgactacc
     5041 aatcggttcc acctagtccg tctggaggtt cgttcgcggt atccaacccg ttcctcttct
     5101 ggttcgcact tcttggcggt atcgcgttta tgttgcccgc tcttcagcac acagtgccga
     5161 cactattcag gaagcgacgg ctaaagattg gtgaagagga gtaagattca ctcttagtcg
     5221 tgagggacaa cgtccattgg caaaagattg cgctcgtact cgagcatagc aatcttttga
     5281 gggtcaagaa cgaagcgcgt attggcttcc tcgacaccgt agagctgaat cagttcatcc
     5341 ttgaaagctt cacgaaggtc ttcttcggtg acatggatag gtgcacccat actaatctgg
     5401 agtgcacggg caccgatgat tcgggccttc tcgaagcgcg tgtgggatct gattggcttg
     5461 accatggtct agtcacctac tgtccgaccg acttaggggg gtgagataag gcctgcgctt
     5521 ggtaaatcag agttattcaa cccgttcgat tagcatagca accgcattcc cgccgcctag
     5581 acagagtgtc acaatacctg tagaaccacc agttcttcga agcactccga gcatcgtcat
     5641 caggcaacgt gtccctgatg cgcccaacgg gtgcccgagg ctgacagctc caccatgtag
     5701 gttgaatcgt gcctctggaa tgctgacttc ctttgcaacc gcacaagaag cggcggcaaa
     5761 agcctcgttg tgttcgtata cgtccacatc ctcaactcca agttcgttac gttcgagcaa
     5821 ggcttgaatc gcaggaatag gcgcgtacat tacgcgagct ggttctaccc cacttgtgta
     5881 ttggtcaatg attctcgcga ggataggcca cccctgctcc atagcgaatg attcgtcagc
     5941 aacaaggacg gctgatccgc cgtcgttcaa agtcgatgcg tttccagcag tgactgttcc
     6001 atttttcttg aatacagtgc gaagtccagc tagtgtttcg acatttgtgc tgtctcggat
     6061 gccttcatca tgaatgacat tcttcaaact tccatcagat tgcggagcat cgacagggac
     6121 gatttcccaa tcaaaccatc cggaatccct agcagttgca gccagttttt gtgaacgggc
     6181 cgcaaaagtg tccatctcaa ttcttgagat gttgcattca tcagcaatca attcgccagt
     6241 gtttcccata tgtatgtcat tgtagatgtc ccaaagtccg tcgtaaacca tcgaatggac
     6301 aatcgtatct acatcaattt ctgtgccctt gtggtaattc cttactaaat ggggggcatt
     6361 ggtcatactt tccatgccac ctgcgatgac agcacgatgt tctcctgcac gaattgctgt
     6421 tgctgcaatc attaatgcct tcagacttga tccacagacc ttgttaatgg ttgcacaggg
     6481 tgttgaagcc ggcaagccgg caccaagggc gacttgtcgt gctggattct ggcctgcacc
     6541 tgcttggatg acttggccca ttagtacgtc atcgatgata ttctccatgg ggttgatgcc
     6601 tgccctttct aggacggaac ggactgctac aattcctagg tctacggctg acatttggga
     6661 gaaaacacca cgatatttcc ctataggcgt gcgagcgaca gcacagatta ctggcgttcc
     6721 catggagtcg catcgggccc cccaagatga atctcacggg tcagaatcac aatttagagt
     6781 aggtctaaaa ctatgcgaat ccatagaatt cagggtctcg aatttgaggt ctaagttccg
     6841 atttaactag aatagttcga acggcccaga gatcagtgaa tactcggtat gtcgtggttg
     6901 cgtcgagata atctacgcca gatgatccac cagtaccaat cctccttccg attatccgtt
     6961 ctaccatgcg ggcgtgactg tgacgccact tcaccatcga ttcttccaat tctatcatcc
     7021 gatcaatgag ggtgcgaggc catgcgagga gaggtaaatc tcgatgtgat tcgatgaata
     7081 ggagtccggc tcgagggcgg tcgacttcac cgttgggcat caggaaatcg cgtgccccct
     7141 tcgcgacagc cgcgaaccgt gctttcatcg cgtcggaatc tcccatgccc cattcggaca
     7201 ttcgctctgc catctctgaa ccatgttgtt caagggcagc gatgtgtgcc tctacgtaag
     7261 attggaccac ctccgcatcg tttgttgaat cgggagttga accatcgata ggtgtacgtc
     7321 caagccagtt acgtgctgta tcccatagag agatttcatc cattcttgac cgaagccgct
     7381 ctaaatctac cttgccttgc tctgatgttt cagccatctg tatgaaacgc ttgagtggat
     7441 ccatgcctct gttgcgatga tcatcttgga ggccaatcag aatctctagt tctcgcattt
     7501 gagcggattc aaagcccgaa gcggacccca aaccatctcg gaaggcaaga aaatcctgcg
     7561 gactaagggt ctccatcaca gaccattgct gagacatgag tcggaagatt tcggtcacac
     7621 gtccgagacg gtggacgacc ataggtatcg cctcttccgc gacggattct gtatcgagga
     7681 cgtctcgaga ctcagcaagc tcacgaatta cttgcttgaa ccatagctca aaggtttggt
     7741 gaaccacgat gaaatgcatt tcatcagcac tcacatctcc atctctttgc agggcgagta
     7801 actcggtcag actaaggtat tctccgtaac tcagactccg ttgtggtccc ccgctcatga
     7861 cttcacatcc gttgcccggt atgtaatgga tttcggtagc acttcctaga attgaaatgt
     7921 gggtaagcgt caataaccac tcaccggtgg cgtccctaat ggcaggagac gcccttcccg
     7981 ttgccgagtg gctctcggat tacgacgtct cccagattac tatcggcgtg gtggcatccc
     8041 actcctctct tcagattctt cacggtgccc gtcaagaggg attcagaact ttgggcatct
     8101 gtgtgggcga ggcacgtcgt aaaatgtaca gtgcattccc tggggcggag ccagatgaat
     8161 ggctcattct tgacaattac aagcagatga tggattatgc cgattatctg cgtgaacgta
     8221 atgtgatcat cattcctcac gggtcccttg tagaatatct tgggcccaag aatttccagg
     8281 ctctttctgt gccaacgttc gggaatcgca acatcctcga atgggaaggt agccgagaaa
     8341 ggcagcgctt gtggcttgag tccggaggat gttcgatgcc ccgtgtgatt gaggatccta
     8401 aggacatcga tggaccagtt atcgtgaaat atgcgggggc gaagggtggt cgaggatatt
     8461 tcgttgctcg tgattttcgt gacttccgtc gcaatgtaga cctcgaagaa gatttcacga
     8521 ttcaggaata tgttt
//
LOCUS       DUKB01000050           11922 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_22546, whole genome shotgun sequence.
ACCESSION   DUKB01000050 DUKB01000000
VERSION     DUKB01000050.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11922)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11922)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11922
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_22546"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..913)
                     /locus_tag="HA345_01825"
     CDS             complement(<1..913)
                     /locus_tag="HA345_01825"
                     /inference="COORDINATES: protein motif:HMM:NF016952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminyl-peptide cyclotransferase"
                     /protein_id="HIH84127.1"
                     /translation="MRFRPRRISTLMCVVLFICSQSFNPALSHSVNAASNNAESSTDE
                     PIKVGYEILETVQRNVTPFTQGLEIYDDHLYESSGIYGESTLRIYDPYTGEVIVSQEL
                     PEHVFGEGLTIHDSRIYILTWKAEQVYIHDTDLKPVDTATIEGEGWGICSTGNELVTS
                     NGTSTLSFRNPSNLQVNDTLDVKLSGEPLDRLNELECVGGQIYANRWHDDRIFRIDSE
                     SGAVEAVLDLEELVEGYAPDEEESVLNGIAHIPETNDFWVTGKNWPTLHLIRLNETTQ
                     ANDFEALVETFEAQYAIFGLVLFAILGP"
     gene            965..5107
                     /locus_tag="HA345_01830"
     CDS             965..5107
                     /locus_tag="HA345_01830"
                     /inference="COORDINATES: protein motif:HMM:NF012999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HIH84128.1"
                     /translation="MMSGGTSSTSIPRASRPNAGVTLVLIMLFASMSPFFASADVPEE
                     EDELFTGNLDDFDIDDSGKAYLSTPAGDPVFSGTRHLKNQWIAAGMPGMILPFAPDAV
                     QSRSIGARACENAWSQGDAVTMPTASGNIAAEVERVTSYAAIIVENGVSIPSTTINDI
                     ASTWDSSIYPTDTSYFGNPPDVDNNCQIEIVILDIDGPSNIGGYFSPGIASSREAIFV
                     DSSDLGWRNVIFAHEFEHLLHNARDPLEYAWIDEGNADMAAFLILGAESTLIGHSNGW
                     ASNASCSVRWWNQRTDCDYGAGFLFMLYLADKLGGGQAIQSLVADTATGGASIENLAR
                     NPIPGSPGNIGTTMDEIFANFTAAAVLDSQQGSFGFNNIEMGGTCSSQAFCRLQLTDQ
                     NFNWGSTYTSQNHDLEGWGVRAWRFASGTGAPLNVMVSPSEFGFDGILLQKDAVAQTW
                     STSDLRFDPGSGIGTGVVEGFGNITDEVYLITWYASSIDDCDYTFPNCGFSGGSTAYP
                     TATVDVTAALISEPPSVRVESTISSDRDMDGDSDTVNLTMVANSTAFFEILDVTVHAF
                     KDNILFDSYEMDVAAGNGVEVPVNLHFTAPEDGDYVFDIELRNYAGTLVDEALTAPVP
                     LHNMAPVAASTSAANVTQTHLALQFFGAGYDEWGFSPDNQSFTQNKTPVGYSWDFGDG
                     SVSGLKNPLHAWVQSGNYSVESAVVDRGGGVSLPVTWSINVSDTSAPIVGLTVQSVDI
                     KDGLSLRTNERVLFDARSTVDNVPDDQLLFTWDFGDGRVVSGIGLVEVDHAWSTGSSD
                     GLVHVLNLTVSDGTFSSSIDVNITILNRPPRQIFDVPLETHTLTSLQMPLVFIDDDGT
                     IVNMTWSFDEAVNLEGGLLSQLDPFTETESTSFSPAPAWRTPGLKTVNVSATDNDGNT
                     TVVSLSVNVLNQRPIALFARPDEGTVSTQYTFQSTSFDPDGDDSMMTTIWNIEGEDEV
                     TNQSAVLHTFDEPGVYTVSLLVVDELGLESHLKSYLVSIVNPLPLPVLTAYEASLDGV
                     LVTSPSENISQFDFWHPLASDGGIFIASGTPIRFSAEGSRDADPKFAGMTNPDPSSPD
                     WNGIVSYSWNFGDASPIVDGENVWHSFSLPGTYVVILTVRDGFGTGDTNQTQRVVHVS
                     APPTIQDTPLFNDEIDPMTNVILYVSYQDEDLMNGITAFRDTDVLSDSDADGVLDNDP
                     NQPLNDGLTLYWDLDPTVDSNEDGNFQNDWIEASEITGLSWNESGTYILIARVCDGTD
                     SCTIKAFSIDVRDDTDVGPRSLSDFELSDLIPSDSSSLWVLLLVALVLVLGWLVMRQP
                     NEEESEVDEQPTYDVTEIQTEGGMIGMDQHSAPPKPKNLDREDRRSRESGYVRPVGSR
                     RR"
     gene            5112..6017
                     /locus_tag="HA345_01835"
     CDS             5112..6017
                     /locus_tag="HA345_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84129.1"
                     /translation="MGGRRSAIFGVLVLFFISMSPGGLVDPKPVDAASSCNPESAPTW
                     GTHAQLIEVSSSKNDDDWFPSLSQTSNVRLSPLLDGFSSRVNISNGGHTAIRFQPQEG
                     YRYTFCISLSLAPNQTIQPTPEADIYLMEGIDYERYSMDEWYGDAPSDWYSFYGWIPY
                     RDIHAYEGQSSTDFAVTYEGGGTSSSFGIFSSSDSEGMYLVLDAKNNSRDTDSPSVGA
                     DLIGEVYVTVEERVMLPKISAYLLCCSLPFVVIIAPLILHQRYNRGGWHDVSTKHYIP
                     EVDLMHMVETTQGSTSNPYLDETDV"
     gene            complement(6021..6827)
                     /locus_tag="HA345_01840"
     CDS             complement(6021..6827)
                     /locus_tag="HA345_01840"
                     /inference="COORDINATES: protein motif:HMM:NF013640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HIH84130.1"
                     /translation="MARPKVVVSLCGNTVEEMLEDAALATAAGADMVEVRFDQLWIKR
                     EAVIEEDENEEGDRRRRNREPKWNYIPLPIESVDVETSINAFKSGIRIPAIFTCRPVR
                     QDGGFPGEEPERISVLKFAIDSGVSYIDIEDDVPEEDLNVLKGTITGSTKVIISDHSS
                     SPPSVEEIIQRVDDMAAKGDLVKICYRLGNRGGALRVLEAAKDIGEREGGPDVALMGL
                     GEGGAWARIHAPLIGTRIVYSTMDESMSVMKQGRINLEDLTIAWDLLEYD"
     gene            7022..8971
                     /gene="gyrB"
                     /locus_tag="HA345_01845"
     CDS             7022..8971
                     /gene="gyrB"
                     /locus_tag="HA345_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013821170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HIH84131.1"
                     /translation="MTDEYGAGSIQVLEGLEAVRKRPGMYLGDPHDGSALHHCIWEVV
                     DNSVDEHLAGHTDSIDIILHPDNSLSVRDYGRGIPVGIHDDYGISAAEVIMTKLHAGG
                     KFDNSSYKVSGGLHGVGVSAVNAVSEWMEMTIHRGGVIYFQRYEAGVPVESLKEIGTC
                     DDTGTMISFKPDLSIFTEVLEFDIEEVNTRVSETAFLNAGLKIIISDERSSDHHVVEH
                     LYEGGLAEYVGQLNERREALHAEVIKISGEKEIEKGIVEVELALQWSDAFSESIRCYT
                     NIIRNKDGGTHMSGLRTALTSSVNSYAKKKNLLKGDSLSGDDVREGLAAVVSVKHPDP
                     SFSSQTKDKLVSSEVTGIVQTIVYDKLGEFFEENPAVAKQIVEKALLASKAREAARKA
                     RDLTRRKGVLEGGGLPGKLADCQSRDPSECEVYLVEGDSAGGSAKTGRDRRIQAILPL
                     RGKILNVERQKHNAAKVFQNQEIQTMIRALGAGVGNNVEEEGGFDTEKLRYNKIIIMT
                     DADVDGAHIRTLMLTFLWRFMRPAIEKGHVFIAQPPLFQLSKGRVSKYAFTDDERDAI
                     LDELRGDNPNAKIGVQRYKGLGEMNPEQLWETTMNPETRTMLKVTVKDAEDSDRMFEI
                     LMGDDVPDRRAFIEKHAKEVTNLDI"
     gene            8961..11843
                     /gene="gyrA"
                     /locus_tag="HA345_01850"
     CDS             8961..11843
                     /gene="gyrA"
                     /locus_tag="HA345_01850"
                     /inference="COORDINATES: protein
                     motif:HMM:NF004043.1,HMM:NF015922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HIH84132.1"
                     /translation="MTSEDEKMNEESGEAVETGNILNQPLNEEMKTSYINYAMSVIIG
                     RALPDARDGLKPVHRRVLYGMHEGGHTSEKKFSKSARSVGEVMGKYHPHGDQSIYDTM
                     VRMAQEFSLRYPLIDGQGNFGSIDGDPPAAMRYTESRLDKISKHMLEDIEKKTVDFQP
                     NFDDSEMEPSVLPARLPNLLLNGSDGIAVGMATRIPPHNLTEVAGAIRLHVSRILEEG
                     DENKGMPGVSIKEYMSHVTGPDFPTGATIHGVDGIEDMYTGGKGRFHVRSKCDVYDDS
                     NGKKIVINEIPYQVKKADMLVHIAELVTKGTIIGIRDIRDESSKEGIRVVIEVKNNAD
                     PHAVLNQLFKSSRLQESYSANMMGILDGRPVLLTLPVMIHTYVEHRELVVEKRAQFEL
                     EKAEARAHILEGLVKAQARIDDVITVGKASSSREQFEAVLQGNETMSGIAPFDFTEPQ
                     AKAIAERRLYQLSRLDVEKVENEHNELKIKIADLQDIIASRVRRLDILIQELNEMVEK
                     HGDERRSDIDPMPLSMDREDLIEERAIVITLTNDNYIRHLPAESFRMQNRGGKGMKGV
                     QTKNEDFPTTLLTCFSKDRLLIFTNRPAIKKVKDKEGNETEVPYIEGRVYGLRAWETP
                     RGSRTSKGGHIRNVIGLKDDETVVSIVPLTKELIDDPGDNFLAFATQRGIIKKSMLSH
                     YIKINRNGKKAINLADGDQLISVRPGTDEDNVVMVSSNGLATRFMLNAVNSQGRVSSG
                     VRGLKLKDNAKLVGMIITNDENTSVLTLSEQGMGKRTRIGTGDSIPIMKDGEPVLDPE
                     GKPKMGTDGYRLAKRRGGSGVKTMNLNDGDAISRVHQIPDLEDQLFLLSRKGTVIRLS
                     ASQTKETSGRSSKGTRVMELRNKEKNGFIDELIYSARMPAELANEILTEKIEDNAPDS
                     DITGEGIKESHIAEEITSDSDVKESGIDSIMFDSVDEDDDIDSFLQ"
BASE COUNT         3228 a         2540 c         2934 g         3220 t
ORIGIN      
        1 gaggtcctaa gattgcgaat aatactaggc caaagattgc atattgtgct tcgaaggtct
       61 cgaccaatgc ctcgaaatca ttcgcctgag tggtctcatt taggcgaatt aggtgtaatg
      121 tgggccagtt tttcccagtc acccagaagt catttgtttc tgggatatgg gcgataccgt
      181 tcagaacaga ttcttcttca tcaggagcgt atccttctac tagttcttct aaatcaagca
      241 ccgcttcaac tgcacccgat tctgaatcta ttctgaagat gcggtcatca tgccaacgat
      301 tagcatagat ttggcctcct acgcattcga gttcgtttaa tcgatccaaa ggttcacccg
      361 agagtttgac atctaatgta tcgttcactt gtagattgct tgggttacgg aatgaaaggg
      421 tagatgttcc gttggaggtg accaactcgt ttccggttga gcaaatcccc caaccttcgc
      481 cttcgatggt tgcagtatct acaggtttca agtcagtatc atggatgtat acttgttcag
      541 ccttccaagt taggatgtat attcggctat cgtggatagt caacccctcc ccaaaaacat
      601 gctctgggag ttcttgagac acaatgactt cgccagtata ggggtcgtat atcctgagtg
      661 tggattctcc atatatgccc gatgattcgt agaggtgatc atcgtagatc tcgaggcctt
      721 gtgtgaatgg ggtcacattt ctttggacag tttctagaat ttcatatcca acttttattg
      781 gttcatcagt gcttgattca gcgttgtttg aagcggcatt cactgagtgt gagagcgcgg
      841 ggttgaagga ctgtgaacag atgaacagga ctacacacat cagggtcgag attcgtctcg
      901 gcctgaagcg catgtatgaa ccacgctcca ccgggactta aatacgacat ctgaggaata
      961 ttcaatgatg agtggaggga cgagcagcac atcgattcca agggcgtctc gcccgaatgc
     1021 tggggtcacc cttgtcctca ttatgctgtt tgcatccatg tcgccgttct ttgcctctgc
     1081 agatgttccc gaggaagaag atgaattatt cactggtaat ctcgatgatt ttgacataga
     1141 tgactctggg aaagcatatc tgagcactcc tgcgggtgat ccggtcttct ctggcacgcg
     1201 tcatttgaag aatcaatgga ttgctgcagg tatgccgggg atgattctcc catttgctcc
     1261 tgatgcggtc cagagtcgaa gtattggtgc acgtgcttgt gagaatgctt ggagccaagg
     1321 cgatgctgtg actatgccga cagccagcgg gaatatcgca gcagaggtcg aacgagtcac
     1381 ctcgtacgcg gccattatcg tcgagaatgg agttagtatc ccatcaacta cgattaatga
     1441 catcgcatct acttgggaca gctcaatcta ccctacagac acgtcatact tcggcaatcc
     1501 accagatgtc gacaacaatt gccaaattga gattgtaatc ttagatatcg acggaccatc
     1561 gaacattggg gggtactttt cccctggcat tgcatcatcg cgcgaagcaa tcttcgttga
     1621 tagttcagac cttggatgga ggaatgtcat atttgctcac gagttcgaac atcttctcca
     1681 caatgcccgc gaccccctcg agtacgcttg gattgatgag ggcaatgcgg atatggcggc
     1741 tttcctcata ctcggtgcag agagtactct aattggacat tctaatggat gggcatctaa
     1801 cgcatcttgc agtgtccgtt ggtggaatca gcgaacagat tgcgattatg gcgccggatt
     1861 cttgttcatg ctttatctcg cagataaact ggggggaggg caggcgattc agagccttgt
     1921 tgcagatacg gcgacaggag gggcatccat cgaaaacctt gctcgtaatc cgatacccgg
     1981 ttcgcccggg aatatcggaa ccacaatgga cgaaatattc gctaacttca cagccgctgc
     2041 tgttctcgat agtcagcaag ggagttttgg attcaataac atcgagatgg ggggtacctg
     2101 ttcgagtcaa gcattctgtc gtttgcagtt gactgatcag aatttcaatt ggggttcaac
     2161 gtatacaagt cagaatcacg acttggaagg ctggggagtg cgtgcttggc gcttcgctag
     2221 cggtactggc gctccactca atgtcatggt gtctccctct gagttcggat tcgatggaat
     2281 actcttgcag aaggacgctg tggcccagac ttggtcaaca tctgatctcc gtttcgaccc
     2341 agggagcggt atcggcaccg gggttgtaga gggttttggc aatattaccg atgaggtata
     2401 cctaatcact tggtatgcca gctctatcga tgattgtgac tacactttcc ctaactgtgg
     2461 attcagtggg ggttccactg cgtatcctac agccacggtt gatgttactg ctgcgttgat
     2521 atctgagccc ccatcggtcc gtgtagagtc gaccatctca tcagatcgtg acatggatgg
     2581 ggattctgat acggtcaacc tgactatggt ggccaactct acggcatttt tcgagatact
     2641 tgatgtgaca gttcatgcct tcaaggacaa tatcttgttc gacagttatg agatggatgt
     2701 ggcagcaggt aacggtgttg aagttcctgt gaacctccac ttcaccgctc cagaagatgg
     2761 cgactatgtg tttgatattg agttacgcaa ctatgctggc accttagttg acgaggcact
     2821 tacggctcca gtcccattgc ataacatggc tccagtcgca gccagtactt ccgctgcgaa
     2881 cgtaactcag actcatcttg cgcttcagtt ctttggtgca ggttatgacg aatggggttt
     2941 cagtcctgac aaccaatcat tcactcagaa taagacacct gtggggtatt cgtgggactt
     3001 tggagacggt agtgtttcag gcttgaagaa tccgcttcat gcttgggtac agtctggaaa
     3061 ttatagtgtg gaatcggcag ttgttgatcg tggtggcgga gtttcactcc cagttacatg
     3121 gagcatcaac gtctctgaca cctctgcgcc aatcgttgga ttaacagttc aaagtgtcga
     3181 catcaaggat ggcctttctc taaggaccaa tgaaagggtc cttttcgatg cacgttcaac
     3241 ggtagacaac gttcctgatg atcaactcct tttcacgtgg gatttcggtg atggtagagt
     3301 cgtatcaggt attgggctcg tggaagtaga tcatgcctgg tccacagggt caagcgatgg
     3361 attagtacat gtgctaaatc tcacagtttc ggatggaaca ttttcatcat ccatagatgt
     3421 caacatcact attctgaatc gccctcctcg gcagatattt gatgttccac tcgagactca
     3481 tactcttacc tctcttcaga tgcctcttgt cttcatagat gatgatggta ccatagtcaa
     3541 catgacttgg tccttcgatg aagcagtcaa tcttgaaggt ggtttgttga gtcaattgga
     3601 tccgtttaca gagacggaat ctacttcttt ttcgcctgca ccagcttggc gaactcctgg
     3661 ccttaaaact gtcaatgtgt ccgcgactga caatgatggt aacactacag tggtgtctct
     3721 ttctgtgaat gtcttaaatc agcggccgat tgctcttttc gctcgacctg atgaaggaac
     3781 tgtgtccaca cagtacactt tccagagcac ttcgtttgat ccagatggtg atgactcaat
     3841 gatgactacg atttggaaca ttgagggcga ggatgaggtc actaaccaga gtgcagttct
     3901 ccacaccttc gatgaaccag gggtttacac agtgagtctt ctagtagtcg atgaacttgg
     3961 tcttgaatca catctgaaat cctatctggt atcaattgta aatccgctcc cgttgcctgt
     4021 tttgacagca tatgaggctt cactcgatgg cgttcttgtc acatctcctt ccgagaacat
     4081 cagccagttt gatttctggc atccactggc ttccgatggt ggcatattca ttgcttcagg
     4141 cactccaatt cgtttctctg ccgaaggttc cagggatgct gatccgaagt tcgccgggat
     4201 gaccaatcca gatccaagtt ctcccgattg gaatgggatt gtcagttata gttggaattt
     4261 cggagatgct tccccgattg tcgatgggga gaatgtttgg cacagtttct cattaccggg
     4321 cacctatgtc gtaattctga ctgtgcggga tgggttcggt accggtgata cgaatcagac
     4381 tcagcgagta gttcacgtca gtgctcctcc taccattcag gacactcctc tgtttaatga
     4441 tgagattgat ccaatgacta acgtaattct ctatgtctcg tatcaagatg aggatttaat
     4501 gaatggaatt acagctttcc gtgacacgga tgttctttct gatagtgatg cagatggagt
     4561 cctggataat gatcccaatc agccattgaa tgatggccta actctctatt gggatcttga
     4621 tccaacagtc gattccaacg aggatggtaa tttccagaac gattggattg aagctagtga
     4681 gattacaggg ttgagttgga atgaatcagg cacttacatc ttgattgccc gtgtttgtga
     4741 tggtactgat tcatgtacta tcaaggcctt cagtatcgat gtcagagatg atacggatgt
     4801 tggaccacgt tccctctctg atttcgaact gtctgacttg attccttccg attcaagtag
     4861 cctttgggtc cttctcttag ttgcacttgt cctcgtactt gggtggcttg ttatgcgcca
     4921 accaaacgag gaagaatctg aagtcgatga gcagccgacc tatgatgtca ctgagattca
     4981 gacagaaggt ggcatgattg gtatggatca acactctgcg cctccaaagc cgaagaacct
     5041 tgatcgagag gaccgaagaa gccgggaatc gggatatgta aggcccgttg gttcgcggcg
     5101 taggtgattg aatgggtggc agaaggtcag caatctttgg cgtccttgtg ctttttttca
     5161 tatctatgtc gccagggggc cttgtagatc caaaaccagt tgatgctgca tcttcatgca
     5221 accctgagag tgcgccaaca tggggtacgc atgctcaact aatcgaagtt tcttcttcaa
     5281 agaatgatga tgattggttc ccctctttat ctcaaaccag taatgtccga ctttctccat
     5341 tactggacgg atttagcagt agagtcaata tctcaaatgg aggtcacact gcgatccgat
     5401 tccagcctca ggaaggttat cgctatactt tctgtatctc tctttctctt gctcctaacc
     5461 agacaattca gccgacgcct gaggctgata tttacttgat ggaaggtata gattacgaga
     5521 ggtactcaat ggatgaatgg tatggcgatg ctcctagtga ctggtattca ttttatggat
     5581 ggattcctta tcgggatatc catgcctatg agggtcagag ttcaacggat tttgctgtga
     5641 cttatgaggg cggagggacc tcctcgtcct tcggtatttt cagttcatcg gatagtgagg
     5701 ggatgtacct agttcttgat gcaaagaata actcgcgtga cactgattct ccttcggttg
     5761 gtgctgacct cataggggag gtctatgtga ctgttgaaga gcgggtgatg ttgccgaaaa
     5821 tcagtgccta tctcctttgc tgttctcttc cctttgtggt gattatcgca cctctaatct
     5881 tgcatcagcg ttacaataga ggtggctggc atgatgtctc tacgaagcat tacattccag
     5941 aggtcgacct aatgcatatg gttgagacta ctcaggggag tacatcgaac ccatatctgg
     6001 atgaaacaga tgtttgagtt tcaatcgtat tcaagcagat cccaagctat cgttaaatct
     6061 tcgagattga ttctgccttg tttcatgact gacatcgatt cgtccatcgt ggaatatact
     6121 attcgagtac caatcaatgg tgcatgaatg cgcgcccagg ctcctccttc tccaaggccc
     6181 atcagggcca catctgggcc tccttcgcgt tctccgatgt ccttggctgc ttcaaggact
     6241 cgtagcgccc ctccgcgatt gccgaggcgg tagcatattt tcaccagatc tcccttggca
     6301 gccatatcat ctacgcgttg gataatttcc tcgactgaag gagggctgct agagtggtcg
     6361 gagataatca ccttggtaga tcctgtaatt gtgcctttca gtacgttcaa atcttcctcg
     6421 gggacatcat cttcgatatc gatgtaggat actcctgagt cgatggcgaa ttttaggacc
     6481 gaaattctct cgggttcttc tcctggaaat cctccatcct gacgaactgg tcggcaagtg
     6541 aatattgcag gaatcctaat ccctgacttg aatgcgttga tacttgtctc aacatctact
     6601 gactcaattg gtagtgggat gtaattccac tttggttcgc ggtttcgccg tctccggtcg
     6661 ccttcttcgt tttcatcctc ttcgatcaca gcttccctct ttatccagag ttgatcaaag
     6721 cggacttcaa ccatgtctgc gcctgcggca gtggctagtg ccgcatcctc gagcatctcc
     6781 tcaactgtgt tgccgcaaag agagacaacc accttgggac gagccatcga aaccgtggac
     6841 cggcgactta tgtttaatcc tgatgcacaa ttcaagcata tgttcgattt gatttcggat
     6901 cttgaattcg ctttattgct ccctatttat tgagcacttg tttatatact ctagttgaat
     6961 atctgaactt tgtcaaaggg cccccaaagg ggccctttgc gaatagataa ggcgagcgaa
     7021 catgactgat gaatatggtg caggcagtat ccaggtgctc gaaggattgg aggctgttcg
     7081 caaaagaccc gggatgtacc ttggcgaccc tcatgatgga tcagcattac accactgtat
     7141 ctgggaagta gtggacaatt ccgtcgatga acaccttgca ggccacactg attcaatcga
     7201 tattatacta catcctgaca attcactctc tgttagggat tatgggaggg gtatccccgt
     7261 aggtattcac gacgattatg ggatttcagc agctgaagta atcatgacga aattacacgc
     7321 tggtggaaag ttcgataata gttcatacaa ggtttcaggg ggcctacatg gagtaggtgt
     7381 ttctgcagtg aatgcagttt ctgaatggat ggagatgacc atccatcgcg gcggagtcat
     7441 ttattttcaa agatatgaag caggggtgcc ggtagaatca ctcaaagaaa ttggtacttg
     7501 tgacgacact ggcacaatga tttctttcaa accggatttg agtattttca cagaagtttt
     7561 ggaattcgat attgaggaag tcaatactag ggtaagcgaa actgctttcc taaatgcggg
     7621 gttgaaaatt ataatctcag atgaacgcag ttctgatcat catgttgtag aacacctgta
     7681 tgaggggggg ctcgcagagt atgtggggca actcaatgag cgtcgagagg ccctccatgc
     7741 agaagtcatc aaaatcagtg gcgaaaaaga aattgagaaa gggattgtgg aagttgaact
     7801 tgccttgcaa tggtcggatg ctttcagtga atcgattcgc tgctatacta atatcattag
     7861 aaacaaagac gggggtactc acatgtcggg attacgtaca gcattaacaa gttctgtaaa
     7921 ctcttacgcc aagaaaaaga acttactcaa aggggattca ctctcagggg atgatgttcg
     7981 agaaggtttg gctgcagtag ttagcgtaaa acaccccgac ccctcattct catcccaaac
     8041 aaaagacaag cttgtcagca gtgaagttac aggaatagtc caaacaattg tttacgataa
     8101 actaggcgaa ttctttgaag aaaatcctgc agtcgcgaaa caaatagtcg agaaggcatt
     8161 gctcgcatca aaggcgagag aagcagcccg aaaggcacgt gatttgactc ggagaaaggg
     8221 agttctggaa ggtggaggtc ttccagggaa gcttgcagat tgtcaatcaa gagatcctag
     8281 cgaatgtgaa gtatacctag tcgaaggtga ttcagcagga ggatcggcta aaaccggaag
     8341 agataggcgc atccaagcaa ttcttccact tcgaggaaaa atcctcaatg ttgaacgcca
     8401 aaagcacaac gctgcaaagg ttttccagaa tcaagaaatt caaacaatga ttcgcgcact
     8461 tggcgcaggc gttggaaata atgttgaaga ggaaggtgga ttcgatactg aaaaattgcg
     8521 ttacaacaaa atcatcatca tgactgacgc tgacgttgat ggtgcgcaca tccgcactct
     8581 catgctaacg tttctttgga gatttatgcg tcctgcaata gaaaaggggc atgtattcat
     8641 cgctcaacca cccttattcc aactctctaa ggggagagtc agcaagtatg catttactga
     8701 tgatgaaaga gatgctattc ttgacgaatt aagaggagat aatcctaacg caaaaatcgg
     8761 tgtacagaga tacaagggtc ttggtgaaat gaatcctgaa caactctggg agactacgat
     8821 gaatccagaa actcggacca tgctcaaagt taccgtcaaa gatgcagagg attctgatcg
     8881 aatgtttgaa attctgatgg gagacgacgt cccagacaga agggcgttta tcgaaaagca
     8941 cgctaaggag gtgactaacc ttgacatctg aagatgagaa aatgaatgaa gagagcggcg
     9001 aagccgtaga aacagggaac attttgaatc agcccttgaa tgaggaaatg aaaacatcat
     9061 acatcaatta cgcaatgtct gtaattattg gaagagctct gccagatgct cgtgatggat
     9121 tgaaaccggt ccatcgccgt gtcctttacg gaatgcatga aggcggccat acctctgaaa
     9181 agaaattcag taaatcagca cgttctgtag gagaagtcat gggtaaatac cacccacatg
     9241 gtgatcaatc gatctatgat acaatggtta gaatggctca agaattttca ttgagatacc
     9301 ctcttatcga cgggcaagga aatttcggtt caatcgacgg agaccctcct gcggcaatgc
     9361 ggtatacaga gagccgttta gataaaatct caaaacatat gcttgaagat atagaaaaga
     9421 aaacggttga ctttcaacct aatttcgatg attcagagat ggaaccatcg gttcttcctg
     9481 caagattgcc caacctcctt ctgaatggaa gcgatggtat cgcagttgga atggcaacaa
     9541 gaatcccccc tcacaacctt acagaagttg caggtgcaat tcgattgcat gtaagtcgaa
     9601 ttcttgagga aggtgacgag aataaaggta tgccgggcgt ctcaataaag gaatatatga
     9661 gccatgtcac gggccctgat ttccctactg gggcaacgat tcatggggtt gatggtatcg
     9721 aagacatgta cacaggtggc aaggggcggt ttcatgtacg ttccaagtgt gatgtttacg
     9781 acgattctaa tgggaagaag attgtaatta atgaaattcc atatcaagtg aaaaaagcgg
     9841 atatgcttgt tcacatcgca gaattagtca ccaaaggaac aataattgga atccgagata
     9901 ttcgtgacga atcttccaag gaaggaattc gcgtagtaat tgaagtgaaa aacaatgctg
     9961 accctcatgc tgtcctcaat cagttgttca aatccagtag attacaagaa tcatattcag
    10021 caaatatgat gggcatcttg gatggaaggc cggtcctact tactctccca gtgatgatcc
    10081 acacatatgt tgagcacaga gaattagtcg tcgagaagag agcacaattt gaactagaaa
    10141 aggccgaagc aagagcacat attcttgaag gtctagtcaa agcacaggca cggattgatg
    10201 atgtaattac agtaggtaaa gccagctcta gtagagagca atttgaagca gtattgcaag
    10261 gcaatgaaac gatgtcaggt attgcgccat ttgattttac agaaccccag gcaaaagcaa
    10321 ttgctgaacg ccggttgtat caacttagcc gacttgatgt cgaaaaggtc gaaaatgaac
    10381 acaatgaatt aaaaatcaag attgctgatt tgcaagatat tattgcttca agggtacgac
    10441 gcctcgatat cctcattcag gaactcaatg aaatggtcga aaagcatggt gatgagcgca
    10501 gatcagacat agatccaatg cctttatcga tggatcgtga agacctgatt gaagaacgag
    10561 caatcgtaat cacactaacc aatgataatt acattcgaca tttacctgct gaatctttca
    10621 ggatgcagaa tcggggtggt aagggtatga aaggtgtcca aaccaagaat gaagattttc
    10681 caaccacttt gctaacttgt tttagtaagg atagattact aattttcaca aataggcctg
    10741 cgattaagaa agtgaaagac aaagagggta acgaaacgga agtcccttac attgaagggc
    10801 gagtatatgg tctaagagct tgggaaacac cacgggggtc tcgaaccagt aaaggagggc
    10861 atattcgcaa tgttattggt ttgaaagatg acgaaaccgt agtatccatt gttccattaa
    10921 caaaggaact gattgatgat ccaggggata atttcctagc atttgccacc caacgaggaa
    10981 taatcaagaa gagtatgctt tctcactaca tcaaaatcaa tcgaaatggt aagaaagcga
    11041 tcaatttagc agatggcgat caattaattt cggtaaggcc gggtactgat gaagataatg
    11101 ttgttatggt ttcaagtaac ggactagcca ctcgttttat gttgaatgca gtaaattcgc
    11161 aaggtagagt atctagtgga gttcgcggat tgaagttgaa agacaacgca aaattggttg
    11221 gaatgattat cacaaatgat gagaacacaa gtgtgcttac attatcagaa caaggaatgg
    11281 gaaaacgcac tagaattgga accggagact cgataccaat aatgaaggat ggagaaccag
    11341 ttttggatcc ggaaggaaaa ccaaaaatgg ggacagatgg gtatcgtttg gcgaagagga
    11401 gaggtggatc cggagttaaa acaatgaatc tcaatgacgg agatgcgatt tcaagagttc
    11461 accaaatccc tgacttggaa gatcaattgt tcctactatc aagaaagggc acagtaatcc
    11521 gcctatctgc ctcacaaact aaggaaacat ctgggcgatc atcgaaagga actcgagtta
    11581 tggaactacg caataaagag aaaaacggat ttattgatga attaatttac agtgcaagaa
    11641 tgccagcgga acttgctaat gaaattctga ctgagaaaat cgaagataac gcccctgatt
    11701 ccgatattac aggtgagggc attaaggagt ctcatatcgc cgaagagatc acgtcagatt
    11761 cagacgttaa agagtcaggt attgattcga taatgttcga ttcagtcgac gaagacgatg
    11821 acattgactc gtttttacag tgatgcatga gtggtaagtg accgcttcgc ttaagcgagt
    11881 cattgggctc gccggagcac tgcggcagtc gcatagcctg gc
//
LOCUS       DUKB01000051           11159 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_57193, whole genome shotgun sequence.
ACCESSION   DUKB01000051 DUKB01000000
VERSION     DUKB01000051.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11159)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11159)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11159
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_57193"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /locus_tag="HA345_01855"
     CDS             <1..1210
                     /locus_tag="HA345_01855"
                     /inference="COORDINATES: protein motif:HMM:NF014244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HIH84133.1"
                     /translation="AFIVLILAAVFILGFLAFIRQPTPQPIDADVVDLLLIPGVSNGI
                     PLVWPLIALIITLVIHEYGHGIQMRAHGMRVRSFGLLIASMIPIGAFAEPEAKEISQA
                     PIRERMRTYAAGPAVNIVLATFLTFALASTMMNVEPHNQGAYSPAIVLDGPAEAAGLR
                     PYDIIVNVENTSVESAVDLQNLLSLANASDVWLMTVQPYNNQSKSWGDSVEMEIVLAD
                     KHAHYLALNYTPEMLEALDIHPGDPFMGVSSDGLGDAIRSTTGGRDRLIGPFATDLST
                     TERVFYGLFHPIQLVTTPLNFDGEIMAPAEASMLDLNPIHQEIINGIFWLFWFNFLLG
                     FLNLIPVVPFDGGHLMRDGIRGSIKGVSNRISALHPQRIEIFANKTANIASLLFVGIF
                     VLPILFRLIV"
     gene            complement(1154..2110)
                     /locus_tag="HA345_01860"
     CDS             complement(1154..2110)
                     /locus_tag="HA345_01860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="S26 family signal peptidase"
                     /protein_id="HIH84134.1"
                     /translation="MNDGFGWLREVLLAFGMIAVLFGSLVLMTGSTPPMVVVESQSMM
                     TSDESQVGVIDPGDIILVTAPDRRNIVTYVEAIEEGSPVEGHSAHGLPGDVIIYSKNG
                     GADTPVIHRAILFAQANLTVDPMEGVCEEGVLDELLPGPDGINGVCILTWDVPGTTVS
                     NVTKINLALPGYSCHSHGHLTVSNWVPNHEGYLTTGDNLRSNGCTLDQYIATGDDSHF
                     SGLRDENGRPVTAVRPIWVSGIAGPEVPWFGIVKLAASSNSSEVTSDAWMNLGTAVVI
                     LILAVLVGEQIVARILQSAPEYAESDNQSEKNRQDEDTHEEE"
     gene            complement(2119..2928)
                     /locus_tag="HA345_01865"
     CDS             complement(2119..2928)
                     /locus_tag="HA345_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84135.1"
                     /translation="MARRQRQKSGNPMIRWWESQRDNHLNILYSITVLGLGGLLWGLS
                     FFLFLDGVNEYANLIGATWAIFLIGAIALSVAAPELFRYRNQLMILDEVLDLESRATI
                     NKRRKEAEEAATLLGTVHQGRLLAHYEKFNIRAGRAFAPTVHAHASEDSIISAWWNAN
                     QSTLSTMTGMDALSNPAVHRTVIVSAFTSIVLIIWNGLIGLVRMDVDGPRDRALDLGA
                     WLNHNLGGDVSSLTRETPGFDMVSILVLTFLLGIIYSTRPVDEIQMPSEEE"
     gene            3075..8120
                     /locus_tag="HA345_01870"
     CDS             3075..8120
                     /locus_tag="HA345_01870"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84136.1"
                     /translation="MKRCALFMLVLLIGISLSPIAAAATNETQFADGTTTFSHSFTAG
                     NGGDAQTPGVTLPYGAAVTDARFVVEGTAQNTQWENRTTNADFGGVGEGSTSFTGSYF
                     SSWYRNSLNVENDEMTLRTQETTNTNNLAGSSSWDTSSSSYHNQTGRFAANGDRGYVS
                     PTIHGTEFSLPASMGWSTTSGANGALVLVGDTLFTTQYTSSSIYTTPSINSYNTSSAT
                     SGRVTLSFGTCSSNSLYTLYDLTADGDDVVWAVSYNYRYVTKWSVTDSSWTCTGTWTM
                     QSQYYPVGIDVDESTDELKLLVRSSTTYNLWAVSRSAPTTATATTYLGTSTTLSGTLT
                     GLIVEHPRILINSYRSTSSSHFVLHSAGAWVDMQGTITLNQKGHYGISNGEDGTALYA
                     CWYASSSSYCPSTTHRKVFNSGIGSTFEDRTSTSTQTIAIGSTITIGSAITDIDLTGL
                     ISYEPTGTSVEVEVSNDGGVTWKAATLGSTVSFTNAGNQIKWRAYLNGTNNTVSPVVD
                     RVQLTYVASYTSSGYIRGYKYLGSTTGGAPVAAKVWWNSSEPGNSRLNMYFQMGNQYN
                     IQTPGQTISFSGTSTYIYFYIYFYSGTNNAYTPTLEDFNVQFFTQAPSNVKIDIGGDG
                     SDEWTYQNTLLGTTTATGGNILSAINNEIPGTGTGSVTIPISISSTAPGMVRINSFSM
                     TYTMQTVNLDIVWAEGIILHERTEVYEVVTRHVIGEGASDISSASLDFIAYPSSDAPT
                     LSWSQTGNVLDDDPADWIIPIQPGQEGGTYTTNSNGIFEIHWRFRVTSEFPEQDNVGF
                     RVSCTDDQNLTPSVLAETVNTGIRVNQSYGLGWMGVRDTEGQVTSQNLTDGAWISAGE
                     TIFFQGAMWFADSEDAPLNSVFDVQVAQKGPQGDFVQTSWKDQNNPDGSFFISLTVPE
                     IDMPGGITYEIQTYNERDLTHVMPPTEDSQRTFYIDATSPSIVYHYPAEQDYVAARFD
                     QAIIFDVDDDVGDPTELTLHYWVEADHDLNRNGIADNDEYVNRTIVNETSAPNKRFQT
                     TIDDSRNPNLASVSYYVTGNDPAGNPLDSSEGPGVASDLATYRTRKDMESVFTGLHWA
                     GHNDGGAIYSGTDQAISIGLVDANGLIDFEEMNLIFDFEGPDPVRDRQVLSYSGRNDS
                     FWTNSPYIDLLDSSQATVISNDTGLPWVLVDFEFQMTWDWPDEDVSDLAFEYKQLGAA
                     MRTVEFVDQTFHVENDLVLEASSYGVHDVMEPRTGPIDTSTAIRADDRIQWTGRVVYE
                     GSSTAPPNNLGISVEVFDGVQMWSDGSLTENGEYMVEVPLNAAPTLASADTRTFLSSI
                     AGIPGRGEDMTRDTVATTLQLSVDHTPPRIIHRMNPIDIIDIGPDSDLTAVDVAFIGT
                     EECVNDLSDQRCSDLAMAPQQVHWIMRDGTRTIAAGYSILSMELQDDLILWTGTVDLT
                     SNGVVTPRSGYIVGFHVTGQDAAGNVFPQTSNTESDPIREPENLDGDLDLAWVTLGAD
                     LSPELRILSINAEESRVSVGKEVDIQAYVTNLGGDLNRSFTVGFYSGEQTEPFYEEVI
                     DSLDSETTIIITTTWKAEKDVDRVRVMVDSDNEIVEIDEEDNTMSVGIDVAYSWGMGW
                     VEQARQNPLTLILVVIALIVVPIVTFVSVRQMNNSGYDEDMSDMLFNEDEYEEEDDDD
                     YEDEEEDDDDGWE"
     gene            8174..>11159
                     /locus_tag="HA345_01875"
     CDS             8174..>11159
                     /locus_tag="HA345_01875"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012492.1,HMM:NF012493.1,HMM:NF020083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH84137.1"
                     /translation="MSESGWDALHLKVQLILKERKWTPTPIQTAAMDALLNGDDALLV
                     APTGSGKTESAILPIVSNILNEGSPLSSILYITPLRALNRDVERRLPEICEPLGLTVG
                     LRHGDTTQNERQKQSRKPPHLWITTPETLQIMLLGSRLREHLRSVQTVIIDEVHDLAA
                     SERGSQLLLGLERLDALSETRLQRIGLSATVGNPKDISRWLSRDANVIHGYAPRETDI
                     RVHAPEPGTEDRTLSKDWGTSAEAVASFRHVARLVEEDSPSLIFVNSRNAAETVALRM
                     RSVAPNLEIGVHHGSLARETRTEMENRLQKGEIDALICTSSMELGIDVGSIKRVHQIE
                     SPRAVDRMLQRVGRAEHILGGVGRGDLIAWKSDDIAEGVVIGRRAIVGDIEPIGWRDN
                     PRNVATNQLVLLTLQEGWVRCDQATLLLERCHLFDGWTHHDTMELLRLLDDRRMIRLV
                     EDIGDSDPFRWPPVLWKMIAAGLDGVPEERPRLESLEHGDPENHEHIRRLMRTAVPKE
                     LKEHGWFGPGAKTAEVRNRGASMIPDSERYLVRDAVTRAAIGSLDEAFVMGIRDEDDG
                     PTMFVMAGRTWMIIDADPEASELTVAPAALRGEAPVWFGELPPVPAKVAREVGRLRLM
                     VANEIGGGGMPVRGEVPHLTGGHTYTNLDDYRWSDEAKNRFVTSVIEHLDSTGCIPHA
                     GLWTIEQRSDAIVLNTCQGTRINQTLSDLMQAMASMIDGKIGVTIVDPYRIHLKIPGL
                     TIPHLERILLETRPDAVESILRMTTPNSRALRSRVVEIAKIMGVIQRGIDPRSVNVQG
                     IIKRYHNGPLVNEALDKLFHERLDLDGTQDVLRALQDGYIELKMTASGTLGRSERAER
                     DLLLPTYSDKEIREQVEDRLLNERIVQICLNCGDITRRRVARFPERSDACVCGGRLRA
                     TAVESLESRLRDWVADEEPKTRQRMMKNAEIIADRGLDAVLCLVARGVGEQTAIRILS
                     RVEQGDRLSLLRAIHDAEINYAR"
BASE COUNT         3072 a         2712 c         2648 g         2727 t
ORIGIN      
        1 tgcgttcatt gtgttgattc tcgctgctgt atttattcta ggattcctcg ctttcatccg
       61 ccaaccaaca ccgcaaccaa ttgatgctga tgttgttgat cttctactca tcccaggtgt
      121 atccaatggt attcctctag tatggcctct tattgctcta atcattaccc tcgtaatcca
      181 cgaatatgga cacggcatcc aaatgcgtgc tcacgggatg agggttcgga gttttggcct
      241 cttaatcgct tcaatgatac ctattggagc ctttgctgaa cctgaagcaa aagaaatctc
      301 tcaagctcca attcgagaac gtatgaggac ttatgctgca gggccggcag tgaacatcgt
      361 cttagctaca ttcctcacat ttgctcttgc ctcgaccatg atgaatgtcg aacctcacaa
      421 ccaaggcgca tatagtccgg caattgttct cgacggtccc gctgaggctg ccggacttcg
      481 gccgtacgat atcatcgtaa acgtcgaaaa tacatcggtt gaaagtgcag tagacctgca
      541 aaatttactc tcgttagcaa acgccagtga tgtgtggttg atgacggttc agccctataa
      601 taatcaatca aaatcatggg gggattcagt tgagatggag attgtcctcg cagacaagca
      661 tgctcactat cttgccttga attatacacc agaaatgctt gaagcgcttg atatccaccc
      721 aggtgacccg ttcatgggcg tctcaagcga tggcctaggc gatgcaatcc gatctacgac
      781 tgggggccga gatcggctga taggtccctt cgcgactgac ttgtctacaa cagaacgtgt
      841 attctatgga ttgttccatc caatccaact cgtcaccact ccactaaact tcgatgggga
      901 gataatggca cctgcagaag catccatgct cgatctcaac ccaatccatc aggaaatcat
      961 caatggtatc ttctggttgt tctggttcaa cttcttacta ggtttcctga acctgattcc
     1021 agttgttcca tttgatggag gtcacctgat gcgggatggg attagaggta gtatcaaagg
     1081 tgtatctaat cggatttcag cattgcatcc acaacgcata gaaattttcg caaataaaac
     1141 cgcgaatatt gcttcactcc tcttcgtggg tatcttcgtc ctgccgattc ttttccgatt
     1201 gattgtctga ttcggcgtat tcaggagcac tctgtaaaat acgtgcgact atttgctctc
     1261 ccacaagaac tgcaagaatc aaaataacca ctgcagtgcc gagattcatc caagcatctg
     1321 acgtgacctc ggatgaattt gaggacgcgg caagtttgac aattccaaac caaggtacct
     1381 ctggacctgc gattccagag acccaaattg gtcgaactgc agtaactggg cgaccatttt
     1441 catctcttaa tccggaaaaa tgtgaatcat cgcctgtagc gatgtactga tctaacgtgc
     1501 atccatttga acgcaaatta tcacctgtcg tcagataacc ctcatgatta ggaacccaat
     1561 tggagacggt caagtgccca tgggaatgac aggaataacc tggcaatgcg agatttatct
     1621 tcgtgacatt actcactgta gtacctggta catcccaagt gaggatacat actccattga
     1681 ttccatctgg acctggaaga agttcgtcca atacgccttc ttcacaaacc ccctccattg
     1741 gatcgactgt taggttagct tgtgcaaaca agattgctcg atggataact ggagtgtctg
     1801 cacctccatt cttgctgtaa ataatgacat ctcccggtaa tccatgagcg gaatgacctt
     1861 cgaccggact tccttcttca attgcctcaa cataagtcac aatatttcgt cgatcaggtg
     1921 ctgtaacgag gataatgtct ccggggtcga tgactcctac ctgagattca tccgaggtca
     1981 tcatcgactg agactccact acgaccatgg ggggtgttga tccagtcatt agcacgagtg
     2041 aaccgaataa gactgcaatc atcccaaagg cgagaagcac ctcgcggagc cagccgaacc
     2101 cgtcgttcac gaaggcactc actcctcttc agacggcatc tggatttcgt caaccggacg
     2161 ggtcgaatag atgataccta agagaaaggt cagaacaaga atgctaacca tatcgaaccc
     2221 gggagtctca cgggtgagag aggatacatc tcctccgaga ttatggttca accaagcacc
     2281 aagatcaagc gcacgatccc gtggaccatc aacatccatc cgtacaagtc caatcaatcc
     2341 gttccatatg atgagaacta ttgaggtaaa tgccgagact atcacagtcc gatggactgc
     2401 tgggttagag agtgcgtcca tcccagtcat tgttgagaga gtagattggt ttgcattcca
     2461 ccacgcagag ataatagaat cttcagatgc atgagcgtga actgtcggag caaaagcgcg
     2521 tcctgcacgg atattgaatt tctcgtaatg agcgaggagg cgaccttggt gaacggtacc
     2581 aagcaatgta gctgcttcct ccgcttcctt cctacgcttg ttgatggtag ccctagattc
     2641 aagatcgagg acctcatcaa gaatcatcaa ttgatttcga tatcgaaaga gttcaggtgc
     2701 agcgacagac aaagcaattg cgccaattag aaagatagcc caagtagccc caatcagatt
     2761 tgcgtactca ttcacaccat caaggaaaag gaagaaactc aagccccaaa gcaaaccacc
     2821 gaggccaagg accgtgatac tgtagaggat attcagatga ttgtctctct gggattccca
     2881 ccatctaatc atgggatttc cgctcttctg acgctgccga cgtgccatgc taaccacccc
     2941 tgcgagagga cttcagggta ttccattttc ggatgtagga gcggtgagat tcactgaaaa
     3001 aaaaacctga cggggttgcg ccatgttcat atgtcgggct gaagggtatt cagtgtgtca
     3061 ccgtaggtgt tggaatgaag cgttgcgccc tgttcatgct tgtgcttctg attggcatca
     3121 gtctgtctcc aatcgccgcc gctgcgacga atgagactca attcgctgat ggcactacaa
     3181 cattcagcca cagtttcacc gctggaaatg gtggagatgc tcagacccca ggggttactc
     3241 ttccctatgg agcagcagta actgatgcgc gattcgtagt cgaagggacc gctcaaaaca
     3301 ctcaatggga gaaccgtaca acgaatgccg acttcggcgg agtcggcgaa gggagcactt
     3361 cattcactgg atcatacttc tcaagttggt accgaaacag cctcaacgtc gaaaatgacg
     3421 aaatgacact acgaacacaa gagaccacta atacgaacaa cctcgcaggt agcagttcat
     3481 gggatacctc atcatcatcc taccacaacc aaactggtcg cttcgcggct aacggcgaca
     3541 gaggatatgt gagccctaca atccacggga ctgaattcag cctaccagct tcgatgggtt
     3601 ggtcaaccac ctctggcgcc aatggtgctc tcgttctcgt tggcgatact ctgttcacta
     3661 cacagtatac atcgagttcc atttacacta caccctccat taattcctac aacacctcat
     3721 ctgccaccag cggaagggtg acactctcct ttggtacatg cagcagcaat tcgctctata
     3781 cgctctatga cttaaccgcg gatggtgacg acgtagtatg ggctgtctcc tacaattatc
     3841 gttatgtcac taaatggtca gtcactgaca gttcatggac atgcacaggt acttggacga
     3901 tgcagagcca gtactatcca gttggaattg atgttgatga atccacagac gaactcaaac
     3961 tcttagttcg atctagcacg acctacaatc tatgggctgt gtcaagaagt gctcctacga
     4021 ctgcaacggc aacaacctac ctaggaacta gcaccaccct aagtggaact ttaactgggc
     4081 ttatcgttga acatccacga atcctaatca actcctatcg gagtacatcg tctagccact
     4141 ttgtgctaca cagcgccggc gcatgggtcg atatgcaagg cactatcaca ctcaatcaga
     4201 aggggcatta tggtatttca aatggagaag atgggacagc actctatgct tgttggtatg
     4261 catcgagtag cagttattgc ccctcaacaa cacatcgcaa ggtattcaat tcaggtattg
     4321 gatctacctt tgaggatcga accagcacca gtacccaaac aattgcgatt ggttcgacaa
     4381 taaccattgg atcagcaatc actgatatcg atttaactgg cctaatttcc tacgaaccaa
     4441 ctggcacatc tgtcgaggtt gaagttagta acgatggagg agtcacttgg aaggccgcta
     4501 cactaggatc aaccgtttcc tttaccaatg ctggtaatca aatcaagtgg cgtgcctacc
     4561 tcaacggaac aaacaacacc gtaagtccag tggtcgatag agtccaactt acctatgtcg
     4621 ccagttatac ttcaagcgga tacattcgag gctacaagta cctcggttct acgactgggg
     4681 gtgccccagt ggctgcaaaa gtatggtgga acagttcaga accaggtaat tcccgtctca
     4741 atatgtattt ccaaatgggg aaccaataca acattcaaac acccggccaa actatctcat
     4801 tctccggtac aagcacttac atctacttct acatctactt ctactctgga acaaataacg
     4861 catacacccc tacattggaa gacttcaatg tccaattctt tactcaagca ccaagcaatg
     4921 tcaaaattga cattggagga gacgggagtg acgagtggac atatcagaac accttacttg
     4981 gaacaactac tgcgacagga gggaacatac tctccgccat aaataatgaa attccaggca
     5041 caggaacagg atcggtcaca attccaatca gcatatcgtc gactgcacca ggcatggtcc
     5101 gaatcaattc cttctccatg acctacacaa tgcagactgt gaatctagat attgtctggg
     5161 cggagggaat tatccttcat gaacggaccg aagtttacga agtggtcaca cgtcacgtaa
     5221 ttggtgaagg tgctagcgat atctcatctg caagccttga tttcatagct tacccaagtt
     5281 cggatgctcc aaccctatca tggtcacaaa ccggtaacgt gcttgatgac gatcctgccg
     5341 attggattat tccaattcaa ccagggcagg aaggtggaac ttacacaact aattctaatg
     5401 gtatattcga aatacactgg agattcagag ttaccagtga gttcccagag caagataatg
     5461 ttggattcag agtgtcctgc actgatgacc aaaacctaac tccctctgtc ctcgctgaaa
     5521 cggtaaatac cggaatccgc gtaaatcagt cctatggctt aggatggatg ggtgttcgcg
     5581 acactgaagg tcaggttaca agtcagaatc taacggatgg tgcttggatt tctgcaggtg
     5641 aaactatctt cttccaggga gcgatgtggt ttgccgacag cgaagatgca ccactaaact
     5701 cagtatttga cgtgcaggta gctcagaaag ggccacaagg tgacttcgtt caaacctctt
     5761 ggaaagacca gaacaaccct gatggatcct tcttcatcag cctcacagtt cccgagatag
     5821 atatgccggg tggcataaca tatgagattc agacatacaa tgagcgtgat ttgacgcacg
     5881 taatgccgcc tacagaagat tcacagcgca cattctacat tgatgcgact tccccttcta
     5941 tcgtttatca ctaccctgca gagcaggatt atgtcgcagc tcgcttcgat caagcaatca
     6001 tattcgatgt cgatgatgac gtaggtgatc caaccgaact cacacttcac tactgggttg
     6061 aagcagatca cgacctaaac cgtaacggaa tcgcagataa tgatgaatac gtgaatcgaa
     6121 ccatcgtaaa cgagacgagt gctccaaaca agcgtttcca aacaacaatc gatgatagcc
     6181 ggaatccgaa tcttgcttct gtatcctact atgtaactgg caacgacccc gctggtaatc
     6241 ccctagattc gtcggaaggt ccgggagtcg cctcagatct agcaacttac cgaacgcgca
     6301 aagatatgga atcagtattc acaggactcc actgggctgg acacaatgat ggaggagcca
     6361 tctactctgg cacagaccaa gctatcagca tcggcctcgt agatgcgaat gggctgattg
     6421 atttcgagga aatgaacctc atcttcgact ttgagggccc tgatccagtt cgtgacaggc
     6481 aagtgctttc ctactccggt cgaaacgatt cattctggac caattcgccg tacatcgatc
     6541 tccttgactc cagtcaagca acagtaatca gtaatgatac aggtctacca tgggttctcg
     6601 tcgactttga attccagatg acatgggact ggcctgatga ggatgtcagt gatttggcat
     6661 ttgagtacaa gcagttaggg gcagcaatgc gcactgtcga gtttgtggac caaacgttcc
     6721 atgttgagaa tgacctagtt ctcgaagcat catcctatgg agtccacgat gtgatggaac
     6781 caagaactgg gccaatcgat acctcgacag ctattcgtgc ggatgatcgt atccaatgga
     6841 ctgggcgtgt tgtctatgag ggatcatcta cagctccacc aaacaatctc ggcatctcag
     6901 ttgaggtctt tgatggtgta caaatgtggt ctgatggttc actaactgag aatggcgaat
     6961 acatggtgga ggtcccacta aatgcggcac caacattagc ctcggcagat acccgaacct
     7021 tcctttccag tatcgccggt atccctggcc ggggtgaaga catgacacga gatacggtcg
     7081 ctacaacact gcaactctca gtcgatcata ctcctccaag aattatccat cgaatgaatc
     7141 ccatcgatat catcgacata ggtccagatt ctgacctaac cgcagtggat gtggcattta
     7201 tcggaaccga agagtgtgtc aatgacctct ctgatcagcg ttgctccgat ttggccatgg
     7261 caccacaaca agtgcactgg atcatgcgag atggaacaag gaccattgct gcaggctatt
     7321 cgatactatc catggagtta caggatgatc tgatcctctg gactggaacg gttgatttga
     7381 cgagtaatgg agttgtgaca ccacgatcag gttacatcgt aggcttccat gtcactggac
     7441 aggatgctgc cggtaatgtg ttcccgcaga caagcaacac agaaagtgac cctatccgtg
     7501 agcctgaaaa cctcgatggg gaccttgacc tcgcttgggt caccctcggt gctgatctaa
     7561 gtccagaact ccgtatcctc agcatcaatg ctgaggaaag ccgtgttagt gtaggtaagg
     7621 aggtcgatat tcaggcctat gttactaatc ttggaggaga cctaaatcgc tcattcactg
     7681 ttggattcta ctccggagaa caaacagaac cattctacga agaggtaatt gacagtctgg
     7741 actcagaaac cacgattatc atcacaacca cttggaaagc agaaaaggat gtggacagag
     7801 tccgtgtgat ggttgattca gataacgaaa ttgttgagat tgacgaggaa gacaatacta
     7861 tgtcagttgg tatcgatgtc gcttacagtt ggggtatggg atgggtagag caggcacgac
     7921 agaatcctct aaccctaatt ctcgtagtaa ttgctctaat tgtggtacca attgtcacat
     7981 tcgtatctgt tcgccaaatg aacaactcag ggtacgacga ggatatgtca gacatgctat
     8041 tcaacgaaga tgagtatgaa gaagaggacg acgacgatta cgaagatgag gaagaggacg
     8101 acgacgacgg atgggaataa tccattcaat gggttcttga gtcatagtga atcggcccca
     8161 acgaggaccg cacatgtctg aatcaggttg ggacgccctg cacttgaagg tgcaattaat
     8221 cctcaaagaa cgaaaatgga cacctacgcc aattcagacc gcagcgatgg atgctttact
     8281 caacggtgat gatgctcttc ttgtagcacc tactggctct ggaaaaaccg aatctgcaat
     8341 tctccccatc gtgtctaaca ttctcaatga aggaagtcca ctgagttcta ttctctacat
     8401 cacacctcta cgtgcgttga atcgagatgt cgaaagacgg cttcctgaaa tctgtgagcc
     8461 tctaggactc actgttggtc ttcgccatgg ggatactacc caaaacgaaa gacagaagca
     8521 atcaagaaag cctccgcatc tatggattac gacacctgag acgctacaaa tcatgctcct
     8581 tgggtctcgc ttgcgagagc accttagatc tgttcaaaca gtgattatcg atgaggttca
     8641 cgatcttgca gcctcagaac gtggatcaca gcttctcctc ggtctagaac gccttgatgc
     8701 tctttctgag accaggttgc aacggattgg attgtccgcc accgtaggca atccaaaaga
     8761 tatctcccga tggttatcga gggatgctaa tgtaatccat ggatatgcgc cccgtgaaac
     8821 tgatatcaga gtacatgctc cagaaccagg aactgaagat agaaccctct cgaaggattg
     8881 ggggactagt gcggaagctg tagcgtcatt ccgtcatgtt gctcgactag tagaagagga
     8941 cagtccgtcg ctgatctttg taaacagtag gaacgccgca gaaacagtgg ctctccgtat
     9001 gcgatcagtg gcccctaacc tcgaaattgg cgtccatcat ggtagcctcg cacgggaaac
     9061 gaggactgag atggagaatc gcctccagaa aggcgaaatc gatgcactca tctgcacaag
     9121 tagtatggaa ctgggaatcg atgtaggcag tatcaagcgt gttcatcaga tcgaaagtcc
     9181 acgtgctgtg gatcgcatgc tccaacgtgt gggcagagca gaacacattc tcggtggagt
     9241 cggacgtggt gatctaatcg catggaaatc tgacgatatt gctgaaggtg ttgtcatcgg
     9301 aagaagggct attgttggcg atatcgaacc aatcggatgg cgtgataatc cgcgcaatgt
     9361 tgcaaccaat caactagttc tcctcacact acaagaggga tgggttcgat gtgaccaagc
     9421 aacattactg ctcgaaagat gccatctctt cgatgggtgg acacatcatg acacgatgga
     9481 actcttgagg ttactcgatg accgacgaat gatacgactt gtggaggata ttggagatag
     9541 tgacccattt agatggcctc cagtcctttg gaagatgatt gctgcaggat tagatggtgt
     9601 tcctgaagaa aggccgcgtc tagaatcatt agaacacggt gaccccgaaa accatgaaca
     9661 catcagacga ttgatgcgta cagcagtccc aaaggaactg aaagaacatg gttggtttgg
     9721 tcctggagcg aaaactgcgg aagttcggaa tcgaggtgca tcaatgatcc ccgattcaga
     9781 gcgatacctt gtcagagacg cggtaacaag agctgccatt ggatctctcg atgaagcatt
     9841 tgtcatgggt attcgtgacg aagatgatgg ccctactatg tttgtaatgg cggggcgaac
     9901 ttggatgatt attgatgctg atcccgaggc atcggaactc accgttgctc cggctgcact
     9961 tcgaggtgaa gcacccgtct ggtttggaga actgcccccc gtacccgcca aagtggctag
    10021 agaagttggt cgattgaggc tcatggtagc caatgaaatt ggaggagggg ggatgcctgt
    10081 ccgaggagag gtcccacacc tcaccggcgg ccacacctat accaacctcg atgattatcg
    10141 atggagcgat gaggccaaga atcgattcgt tacctctgta attgaacatc tggattccac
    10201 tggatgcatc ccacatgctg gactttggac gattgaacaa agaagtgatg caatcgtgtt
    10261 gaatacctgt caaggaacac gcatcaatca gacattatcc gatcttatgc aagcaatggc
    10321 ctcaatgatt gatgggaaaa ttggagttac aatcgttgac ccatatcgaa tccatctcaa
    10381 aattcctgga ttaacgatac cacatctgga aagaatactg cttgaaactc gacccgatgc
    10441 cgtggagagt attcttcgaa tgaccacacc aaactctaga gctctaagat ctcgtgtcgt
    10501 cgagattgca aaaatcatgg gtgttattca acggggtatt gacccacgtt ctgttaatgt
    10561 ccaaggtatc atcaagcgct accataacgg acctctcgtt aacgaagcct tagacaaact
    10621 gttccatgaa cgattagacc tagatggaac tcaagatgtt cttcgagccc ttcaagatgg
    10681 atacattgag cttaagatga cagcttcagg aactctcgga agatctgagc gtgcggaacg
    10741 tgacctgctc cttccaacct acagtgataa ggaaattcga gaacaggtag aagatcgcct
    10801 actcaacgaa cgtatcgtcc agatttgttt gaactgcggg gatatcactc gacgtcgagt
    10861 agcaagattc cctgaaagaa gcgatgcatg tgtctgtggt ggacgactaa gggcgactgc
    10921 ggtggaatca ctagaatctc gtcttcgaga ttgggttgcc gacgaggaac cgaagactcg
    10981 acaacggatg atgaagaatg ctgagattat tgctgatcga gggctggatg cggtgctctg
    11041 cctcgttgct cgcggcgtag gtgaacaaac cgcgattcgt atactctcta gagtcgagca
    11101 aggtgaccgt ttgtcacttc tacgagctat tcatgatgct gagattaact atgctcgaa
//
LOCUS       DUKB01000052            7317 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_106514, whole genome shotgun sequence.
ACCESSION   DUKB01000052 DUKB01000000
VERSION     DUKB01000052.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7317)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7317)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7317
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_106514"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>505)
                     /locus_tag="HA345_01880"
     CDS             complement(<1..>505)
                     /locus_tag="HA345_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004254186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84138.1"
                     /translation="PEVSLVAIFDADREGFLRNERSLLQTIGRAARNENGHVILYADS
                     VSPAMQASIEQTLERRKRQEAHNDANKIIPTTIQKALPVMGQEVEGLLSNTAGKGTSG
                     GKRMVGSRTGGRSGAKDIVKRFDLGVGTWNEHEESILSNISQPSWAHTGADVLETNRE
                     IEGNADDD"
     assembly_gap    506..808
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<809..2581)
                     /locus_tag="HA345_01885"
     CDS             complement(<809..2581)
                     /locus_tag="HA345_01885"
                     /inference="COORDINATES: protein
                     motif:HMM:NF016724.1,HMM:NF037626.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008121777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HIH84139.1"
                     /translation="MDVDHYDLSKVIGERAIANAIPFHLEAEYDPSGDQEKAIEEIIF
                     QLEKGQERCVLLGVTGSGKTFAMAHIIQRLQIPTLILSHNKTLARQLWQEMSSLFPSN
                     AVEYFVSHYDYYQPEAYIPGRDLYIDKELQMNERIEQERFSTVASLVTRQDVIVVGTV
                     STIYGLNPPETFLQHHLRIFVGQSVEPMDVVRELVSLHYGRVSGSDFKRGDIRLRGEV
                     LDIWMPSRDDPIRVRFGFDGIERIQICEAISFEPLDEIEEAWIHPKEFYITAEGSFGR
                     ALEDIEDERDNREKWFRDRNMELESHRIATRTDYDLELLREIGTCKGIENYSRHFDGR
                     KKGERPYCLFDFMAACANTFHGNPDQYLVIMDESHVTLPQLGGMHAGDRSRKRNLIDH
                     GFRLPSAYDNRPLRIDEFQNLVPQMMYVSATPGERELRHLAEITGQDIPPGLEHVPSG
                     GGAVEADVKKKKRAMSMKDTLREIEGVVQMEIRPTGLLDPRIEVRPTEGQVQDLLDEI
                     NRCAGKNERVLVTVLTIKFAEEVAEYLQRMGVKAHYLHSEIGTIERSEIIKALRLGHI
                     DVIVGINLLREGLDIPEVSLVAIMD"
     gene            complement(2591..3316)
                     /locus_tag="HA345_01890"
     CDS             complement(2591..3316)
                     /locus_tag="HA345_01890"
                     /inference="COORDINATES: protein motif:HMM:NF024950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HIH84140.1"
                     /translation="MKLAVITGGGRGIGAAISKRLASDGYRILLTYNNDSQSAESVIS
                     ELRQQRVDCVAVKVDCGQTDEVFILADHPWMQYGVDALILNHGMYHRSPARELTMDDL
                     QETMDVNFRGAVAVYTALSRHLSPHASVVAIGSQLGIRGSPHGAHYAASKGALHAWAR
                     SLAIDLAYSEQRVNIIAPGAIDTDILAGDDNEKRKQRLERIPMGRLGTPDDIASVASF
                     LCSPDSSYMTGAILHVNGGLFLP"
     gene            complement(3326..4264)
                     /locus_tag="HA345_01895"
     CDS             complement(3326..4264)
                     /locus_tag="HA345_01895"
                     /inference="COORDINATES: protein motif:HMM:TIGR01475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HIH84141.1"
                     /translation="MDIREIFSFVKVEHTLFSLPFVLIGYIIAHHQFMDDMSTSVYGW
                     IQMDLVWILIAAIGARGLAMALNRIIDREVDAANPRTEGRHLASGKMDVKTAWSLAAI
                     FLLMLLLGAWMLNQVALMMAWLPVLAFVIYPYTKRFTWLCHLWLGLCLGLAPAGAWVA
                     VAGDVHGWAAITGMLGTHTELLWLPTILPISLGVALWITVFDINYARMDVESDRLNGI
                     HSFPVRFSEETTTRTSVQLSLLWFACFAISNPMDEIWFLAISAGMALANIVVILARER
                     FVDFQTVLFRTSMLTGWILLIPIILMQPDNSCCATN"
     gene            complement(4274..6235)
                     /locus_tag="HA345_01900"
     CDS             complement(4274..6235)
                     /locus_tag="HA345_01900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HIH84142.1"
                     /translation="MAWRNLARYVKSLEASGELVRIQRPVDVELEAGCIADLLVKTDG
                     PAVVFEQPKLPDGTISEIPLVMNLFGTEKRTRKALGVTGDTDIGDRLVSLMKPDIGTY
                     VKRPWKAFPLALDALSLPPKRVRRGRCQDVVMEHADVTKLPIPKTWPMDGGRYITLPL
                     VVTKDPESGEHNLGMYRGQVHGPIEVGLHWQIHKHGADPAAAYEDGRMPVAICIGGPP
                     ELIFSAVAPLPDNLEEYMFAGFLGRRRLRITKALTQDLMVPADADIVIEGYVEPGETK
                     QEGPFGDHFGFYSLTGQYPVLKVTAITHRKNAMLPATIVGLPPMEDGYIGEAIGSQFT
                     PVLRFQHRDVVGIHLPMETGFHNLAIVASKQRYPRQARKTAMGLLGAGQMMFLKTIVA
                     VDADHDPKNLEAFLDALNNNVDPREDILVIEGMVGDSLDPATPYENIQSKILIDASGI
                     VDADPRSGKDGPEGSPAKASPGWRRGEGKAPGVPEGFLDSVQAVEHVADARLLRPSIL
                     VVTTRIEGRPDPKTGMIGRDEEAAANQRMHISQLIDSIWQLPNSKTLRWLFITDDDLN
                     LHDIGTRRRLLWQLFARFDVDRGLRFDVGKARIAWDATTPIPSMEGEVPTRRWPAVTL
                     NDPAMMERVRRSIAEDGLGVRNWPNHILK"
     gene            6322..>7317
                     /locus_tag="HA345_01905"
     CDS             6322..>7317
                     /locus_tag="HA345_01905"
                     /inference="COORDINATES: protein motif:HMM:TIGR02032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HIH84143.1"
                     /translation="MTTQCDVLVVGAGPGGGSAALHAARAGLKVMLIEDHEEIGTPVH
                     CGECISDVAIANLNLSLPESVISKRVHGIRVIFPDGTKKRLTEHGYVLEKHLFEQWIA
                     DEAVSAGATLHLGHRLRSMERMEIDGKFIGHRCEGKGDAFPIEARIVIDASGVAGICS
                     KMLKLNKRPKVIAGIQYEMLEVPTDDYLDFYIWPQYAEKGYLWMIPKSDGRANVGLVT
                     EGAVRGLDRFIADTEFRDLEVINPPWRDDDRKIRGFGGSIPISGPHEHTHADGLMLVG
                     DAAGFTSPLFEGGSHLALKSAQFAALTAAEAIAADDVTAEALSPYPARWKEEFPPY"
BASE COUNT         1657 a         1723 c         1718 g         1916 t
ORIGIN      
        1 atcatcgtca gcatttcctt cgatttctct gttagtttct agaacgtcag ctccagtatg
       61 agcccaactc ggctgactga tgttggatag tatggattcc tcgtgctcgt tccaagtgcc
      121 cacaccgaga tcaaaccgct tgacgatatc cttcgctcca ctcctgcctc cggtgcgtga
      181 acccaccatc ctctttcctc cactcgttcc ttttccggct gtgtttgata ggagcccttc
      241 cacttcctgc cccatcaccg ggagtgcctt ctgaatcgta gtagggatga ttttgtttgc
      301 atcattgtgg gcttcctgcc tttttcttcg ctctaaagtc tgttcgatgg aggcttgcat
      361 tgcaggacta accgaatcag cgtagaggat gacatgtccg ttttcgtttc ttgcggctct
      421 accgatagtc tgcaagagac ttcgctcatt tctcaaaaat ccttcacggt ccgcatcgaa
      481 gattgcaaca aggcttactt ctggtnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnat ccataattgc aacaaggctt acttctggta
      841 tgtcaagccc ctctcgaagt agattgattc cgacgatgac atcaatgtgg ccaagtcgga
      901 gagctttgat tatctcagat ctctcaattg ttccaatctc gctgtggaga taatgagcct
      961 tgactcccat gcgttggagg tattcggcaa cctcttctgc gaatttgata gtcaatacgg
     1021 tgactaatac tcgctcattc ttacctgcac atcgattaat ctcatccaga agatcctgaa
     1081 cttgtccttc ggtgggtcgg acttcaatac ggggatcaag gagtccagtt ggccgaattt
     1141 ccatttgaac gacaccttca atctcgcgca atgtatcttt catactcatt gctcgctttt
     1201 tcttcttcac gtcggcctca acagcgccgc ctccgcttgg aacatgctcg agtccaggtg
     1261 gaatatcctg gccagtgatc tcagcaagat gccgtagttc acgctcccct ggtgttgcgg
     1321 agacgtacat catctgtggg actagattct gaaattcatc gattcgtaga ggtctgttgt
     1381 cataagcaga aggcagtcgg aagccgtgat caatgaggtt acgctttctc gaacgatctc
     1441 ctgcatgcat gcctccgagt tgtggtagcg ttacatggct ttcgtccatg attactaggt
     1501 attgatcagg attaccgtgg aaggtattcg cacaagctgc catgaaatcg aataagcaat
     1561 atggtcgctc tcctttttta cgaccatcga aatgtctact atagttctca attcccttac
     1621 aggtaccaat ctctcgaaga agttcgagat catagtcggt ccgagttgca atccgatgtg
     1681 attcgagttc catgttcctg tctctgaacc atttctcgcg gttatctctc tcgtcctcga
     1741 tgtcctctag agctcggccg aaggaccctt ctgcagttat gtagaattct tttggatgaa
     1801 tccatgcctc ttcaatctcg tcgagaggct caaaactgat agcttcacag atttggattc
     1861 gttcaatccc atcgaaacca aatcggactc taatcggatc atcacggctc ggcatccaga
     1921 tatctaggac ttctcccctg agtcggatgt ctcctcgctt gaaatcagac ccgctcacac
     1981 gtccatagtg gagtgatacc aattctcgta caacatccat tggttcgaca gattggccga
     2041 caaatatcct aagatgatgc tgtaggaatg tttcaggcgg atttaatcca tagattgtag
     2101 acacagttcc aaccacaatc acgtcttgcc gggtgactaa tgatgctaca gtcgagaacc
     2161 gttcctgttc gatccgttcg ttcatttgca attctttgtc gatgtagagg tctcgtccag
     2221 ggatgtaggc ctcaggctgg tagtagtcgt aatggcttac gaaatactct actgcattag
     2281 aggggaatag gctggacatt tcttgccaga gttggcgtgc aagtgtctta ttgtggctga
     2341 gtatgagtgt gggaatttgt agccgttgaa tgatgtgtgc cattgcaaat gttttgcctg
     2401 atcccgttac accaaggaga acacaacgtt cttgcccttt ttctaattgg aaaatgattt
     2461 cttcaattgc tttttcttgg tctcctgaag ggtcgtattc cgcttcaaga tggaacggta
     2521 ttgcattcgc gatggcccgt tctccgatga ccttggatag atcgtagtga tcaacatcca
     2581 tggcaaggcc tcaggggagg aacagaccac cattgacgtg gagtatcgcg ccagtcatat
     2641 acgaggaatc tggactgcag agaaaagaag caacactggc gatatcatca ggagtaccga
     2701 gtcgtcccat tgggatacgt tccaatcttt gtttcctctt ttcattgtca tctcctgcga
     2761 gaatatctgt atcgatggca cctggggcga tgatgtttac tcgctgttcc gagtatgcaa
     2821 ggtctatggc aaggcttcga gcccatgcat gcagtgctcc tttggatgca gcatagtggg
     2881 caccatgggg gctcccacgg attcctaatt ggctaccaat agctacgaca gatgcatgtg
     2941 gagataagtg tctagaaagg gcagtgtata cggcgacagc ccctcggaag ttaacgtcca
     3001 tcgtctcctg taaatcatcc attgtgagtt ctcgtgcagg gctgcgatga tacatgccat
     3061 gattcagaat taaggcgtct actccatatt gcatccaggg atggtctgca aggatgaata
     3121 cttcatctgt ctgaccacaa tcgactttga cagcaacaca atctactctt tgttggcgta
     3181 gttctgaaat tacggattca gcggattgtg aatcgttgtt gtaggtgaga aggatacgat
     3241 atccatctga agctaatcgt ttcgagattg cagctcctat gccccgtccc ccgccggtga
     3301 ttactgccag tttcatctca tcaccttagt tagtggcaca gcaactgttg tcaggttgca
     3361 tcaatatgat gggaattagt agaatccatc cagtgagcat agatgttcgg aataggacgg
     3421 tttggaagtc aacgaaccgt tctcgagcga ggattactac aatattcgca agggccattc
     3481 cagcagaaat agcgaggaac caaatttcat ccatcggatt tgagattgca aagcaggcaa
     3541 accaaagaag cgatagttgt acggaggttc gcgtcgttgt ttcttcactg aatcgtactg
     3601 ggaaggagtg tataccattc aagcgatcgc tttcgacatc cattcgtgcg tagttgatat
     3661 cgaatacagt aatccagagg gcaactccga gagatattgg taggattgta ggtagccaca
     3721 gtagctcagt atgggtccct aacattccag tgattgctgc ccatccgtgt acgtctccag
     3781 caactgcaac ccatgcaccg gctggtgcga ggccgagaca taggccgagc catagatggc
     3841 agagccaagt gaacctcttg gtatatgggt agattacgaa agcgagaaca ggtagccatg
     3901 ccatcataag tgcaacttga ttcaacatcc aagcgccgag aagaagcatg agtaggaaga
     3961 ttgctgctag agaccaggct gtcttgacat ccatctttcc tgaggcaagg tgtctcccct
     4021 cggttcgagg atttgctgca tctacctctc gatcgataat ccgattcaac gccatcgcga
     4081 gtccgcgtgc accgattgca gctatcagaa tccagacaag atccatctgg atccaaccgt
     4141 aaacggaggt ggacatatcg tccatgaact ggtgatgcgc gatgatgtat ccaatcagta
     4201 cgaaaggtag tgagaagagc gtgtgctcca ctttgacgaa ggaaaaaatt tctcgaatat
     4261 ccatcgatct acctcatttc aggatgtgat taggccagtt tctaacacca aggccatcct
     4321 ctgcgatact tcgccgaact cgctccatca tagcggggtc gtttagagtg actgctggcc
     4381 atcgacgagt ggggacctct ccctccattg atgggatggg tgttgttgca tcccaagcaa
     4441 tccgtgcttt ccctacgtcg aatcgtagtc cgcggtcgac atcgaagcga gcgaagagtt
     4501 gccagaggag acgtcttcgt gtaccaatgt catggaggtt tagatcatca tcggttatga
     4561 acaaccatcg taacgtcttc gaatttggca attgccaaat tgaatctatc aattgagaaa
     4621 tatgcattct ttgattggct gcggcctctt catcacgccc aatcattccg gtcttcggat
     4681 caggtcgccc ttctattcga gtggtaacga caagaatact aggtcgtagt aggcgagcat
     4741 cagcaacgtg ttctactgct tgaactgaat caaggaaccc ttctggaaca cccggagcct
     4801 tgccctctcc tctgcgccaa cctggagatg cctttgctgg cgaaccttca ggcccatcct
     4861 ttccgctcct agggtcagca tctacaatcc cactggcatc aatcagaatc ttgctctgga
     4921 tattttcgta aggtgtcgca ggatccaatg aatctccaac catgccttcg ataacgagta
     4981 tgtcctctct tgggtcgacg ttattgttga gtgcgtcaag aaacgcctct aggttctttg
     5041 gatcgtgatc tgcatcgacg gcgacaatgg tcttcaagaa catcatttgt ccagccccaa
     5101 ggagccccat agccgtcttt ctggcctgac gtggatacct ctgcttcgat gccacgattg
     5161 cgagattgtg gaatccggtt tccatgggca gatgtattcc tacgacgtca cgatgttgaa
     5221 accgcagtac aggggtgaat tggctaccaa ttgcctcgcc aatgtacccg tcctccatcg
     5281 gtggtaggcc tacgatagtt gcaggtaaca tggcattctt tcggtgagta attgctgtca
     5341 ctttgagaac aggatattgt ccagttagag aatagaatcc gaaatggtca ccgaatggac
     5401 cttcttgctt ggtctcacct ggttcgacat atccttcgat gacgatgtct gcatcagcgg
     5461 gtaccatcag gtcttgcgtc agtgcttttg tgatgcgaag ccggcgccgt cctaggaatc
     5521 cagcgaacat gtattcctcc agattatccg gtaacggtgc gactgcagag aagatgagtt
     5581 ctggaggacc tccaatacaa atcgcaacag gcatcctccc atcttcgtaa gccgctgcgg
     5641 gatccgcacc atgtttgtga atctgccaat gtagtccaac ttcaatggga ccatgtacct
     5701 ggcctcgata cattccgagg ttgtgttccc cgctctcagg atcttttgtc acgactagag
     5761 ggagtgtgat atagcgcccc ccatccattg gccaagtttt cggaatgggt aatttcgtga
     5821 catcagcgtg ctccatgact acgtcttgac atcgccctct acgtaccctc tttgggggta
     5881 ggcttagtgc gtcgagtgct agtggaaacg ccttccatgg tcgctttaca taagtcccta
     5941 tatctggctt catcaacgaa actagacggt ctccgatgtc cgtatctccg gtaacgccga
     6001 gggctttacg ggtccgtttc tcagtaccga agaggttcat caccaatggt atctcagaaa
     6061 tcgtcccatc tggaagcttt ggttgttcga agacaactgc tggcccatct gtcttgacca
     6121 gtaggtcagc aatacatcct gcttcaagtt caacatccac tggacgttgg atacgaacga
     6181 gttctcctga tgcttcaagt gacttgacgt atcgagcgag atttcgccaa gccatgccca
     6241 tcggtcggga cgggagcatg ataaggttcg tatggaatct tggcgacgag ttgatgaccc
     6301 tagcggctcc tcactcctaa tgtgaccact caatgcgacg ttttggttgt tggagctgga
     6361 cccggtggtg gctctgctgc cctccatgct gctagggctg gactgaaggt catgttaatc
     6421 gaggatcatg aagaaattgg aacaccagtt cactgtggtg aatgtatctc agatgtcgcc
     6481 attgcgaatt tgaatttgag cctcccagaa tctgtaatca gcaagcgagt tcatggaatt
     6541 agagtcatat tccctgatgg tacgaagaag cgcctcacag agcacggcta cgtccttgag
     6601 aagcacctct ttgagcaatg gattgcagat gaagccgtct ctgcaggagc tacgctacat
     6661 ctggggcatc gtctacgttc catggagcga atggaaattg atggtaagtt catcggacat
     6721 cgttgtgagg gtaaaggtga tgcatttcca atcgaagctc gaatagtcat cgatgcttca
     6781 ggcgttgctg gcatttgttc aaagatgctc aaactcaaca agcgtccaaa ggtcattgct
     6841 ggtatacaat atgagatgct tgaggtaccc actgatgatt atctggattt ctacatttgg
     6901 ccacagtatg cggagaaggg ttacctttgg atgatcccca aaagtgatgg tcgtgcgaac
     6961 gtcggtcttg tcactgaggg tgcagtccga ggattggatc gcttcattgc tgacacggaa
     7021 tttagggatt tagaggtcat caatccgcct tggcgcgacg acgatcgaaa gatccgaggg
     7081 tttggaggta gcataccaat ctcaggtcca catgagcata cgcatgctga tggattgatg
     7141 ttggtaggtg atgctgcagg gttcacatca cctctctttg aaggtggttc tcatctggca
     7201 ttgaaatctg cacagtttgc agctctaaca gcagcggaag caatcgctgc ggatgatgtc
     7261 actgcagaag ctctttcgcc atatccggcg cgctggaagg aagagttccc gccgtat
//
LOCUS       DUKB01000053            6216 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_15742, whole genome shotgun sequence.
ACCESSION   DUKB01000053 DUKB01000000
VERSION     DUKB01000053.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6216)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6216)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6216
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_15742"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1242
                     /locus_tag="HA345_01910"
     CDS             <1..1242
                     /locus_tag="HA345_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84144.1"
                     /translation="RVRAGSSEISRGSAPLSDLTIIQSNAMWSGKIDFTDGGATPLLP
                     GYIVDVWVTGADRAGNPYENIANSELQPFDSWRLVRIGPSIDLPTSVIRWSEPSPVGG
                     ENVTLSIEGLNDVDEEGVVLFQIQQEISPGIWADVDGASTELRIMAGSTYNAAIDMTT
                     RTVQEPEVERFRLVARDGHIDVDMMTLESLQIKPYLARDGAALAEQIEESQVTFLLYL
                     AALFGLIFGAIMLVLYRQEMNPEGEDDSEGGIQGEEQTALVEAESKGKSRSPPPPPSG
                     VAISSPPPPPGLNQPVSPPPPAAAPPPPVVEAPSQPAPLQWTDEQLTAQGWSPQQIAT
                     WRVQQAQNAYSQGSTSTEVTGGNTAARFSERVVDHVMRQHGITDRNAFLAAAEFFDSD
                     GNRYLTTAELSKAAEALGEVR"
     gene            1254..1721
                     /locus_tag="HA345_01915"
     CDS             1254..1721
                     /locus_tag="HA345_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84145.1"
                     /translation="MSEDRIPTEDSPSTEKMLFLQENMVHLVNQMSMPVIEVSLVLSK
                     YLNRMVDELEKKAAMNDEILPENVLNPWPIEATGDLDTRGGMSLERILEIVDQDRMDI
                     LDTLIRTVINATELPFMDAVLALRRWEQLARTQLSFASGVGQLFSPMDLPEEF"
     gene            complement(1725..2069)
                     /locus_tag="HA345_01920"
     CDS             complement(1725..2069)
                     /locus_tag="HA345_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84146.1"
                     /translation="MDEGDVGIDIVEELRGRARTPLNVLRIIWYEFSGGVGPWGALRP
                     LIAIGLALVPFLFLGQHFNRQHAKARDWTLLQVPLLLSILLWPLLYIYSIVDAWWLAN
                     ERVAEATKTITV"
     gene            2172..3197
                     /locus_tag="HA345_01925"
     CDS             2172..3197
                     /locus_tag="HA345_01925"
                     /inference="COORDINATES: protein motif:HMM:NF012514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HIH84147.1"
                     /translation="METRRVLLTGFDVFGGLSENISWQVAEFLGETSSIVDLGPRESG
                     SGQPLHRAICIEWVAQRLSVDEAGSRTVAEMISNGSLDDFSAIIHLGLARDAKVPRIE
                     SQGINRNRFIEADNSGRTSNGKIVVNGPDLISCSVDSECVRQDGLSTILELSHDAGGY
                     VCNETLYRTLHALDKDADKVIPCTFLHLPPSEEMDFKLQLDLVQRVSAIVVQPPHIEV
                     AGALFRNGNQWMASRRASGRHEGLWEFPGGKLEPGETVSDALIRECDEELGWAIQPIR
                     LFERVFHVYPHASVELEFWICAYEGDTPPALRSHTEHRWVAKEDLAELDWLEADLPLV
                     KRIQSLD"
     gene            complement(3182..3691)
                     /locus_tag="HA345_01930"
     CDS             complement(3182..3691)
                     /locus_tag="HA345_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84148.1"
                     /translation="MAEPTVWIETRIGAHEDPAKIMECIHILFPDFHPDSEFEVGDYP
                     RSQPWVTIQGPANDLSSFLQKLRDQRILDTAMDAMSMDITDKSSMFRISRQAALAGKV
                     GFVLEGDSSLGGDLRILLEHDDIRYWIETATDHPGRRNVPRRIGDEQGMEMDGSPREW
                     DEERSQSRD"
     gene            3797..4852
                     /locus_tag="HA345_01935"
     CDS             3797..4852
                     /locus_tag="HA345_01935"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HIH84149.1"
                     /translation="MAEPSVLTVIPVLNEELHLDRCLRSIRSQTLTRDQHRVLVLDGG
                     STDSTREIVLQHVRESMSGEGPVVELLDNPGVHVPHARNLALKKVDGESHMFEIIGHA
                     WVPPEHLENRLADLQEAEEEIGRSIGSMGTRIIPEVTGGSWEEASIEALLSSPLGGSG
                     QFARFKGRSVAESPAFCLHRVEAIQDVNGWDERWVVGQDRDLNLRIAKAGWLVMRSDA
                     SYLHMAKRRSFSSLWGMGHRYGYWRARQASVSVSRLRVREFLPWFGFLAVICGFALSS
                     EVDGSIYLSLYLVTSYASVALLVGLLEAVRFRHISLILGVPLGLVILHISFSLGLLRG
                     GLKQPPPANERVKSANH"
     gene            4878..5744
                     /locus_tag="HA345_01940"
     CDS             4878..5744
                     /locus_tag="HA345_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HIH84150.1"
                     /translation="MEEKNRWTSVVLFLSAPFIFLIISNQGPPAVGLLLNETSWAPFA
                     YYGISFGIGYLLFRRSRVVKDMEWHRSKSIQRLDKVYRAEDRGVWLRADAADERLTVE
                     AQRRPVDSRPKVAARLQGSIAGVNREGEPEEIESSSEDVENVELFLELEHVVRSTERV
                     TGKSGPVESVKGVTKDIPPQESDGLVRAALSKLARARERAAMEQIESMSKGERKTRSS
                     PSVESTASAPQVRVIRGQDYDPSPSNLDAQVDSNPVQNSEPVRALRRCVECGSAMVDN
                     DPYCPKCGAFAL"
     gene            5799..>6216
                     /locus_tag="HA345_01945"
     CDS             5799..>6216
                     /locus_tag="HA345_01945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006857010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HIH84151.1"
                     /translation="MSEKRDYYEVLGVDKKATDQELKKAFRSLARKYHPDKNPDDEEA
                     EARFKEVQEAYAILSNSDQRRQYDTFGHNRPGGDPFSGGFQGVNINFEDIFGDGLDSI
                     FTQFFGGGRQRRREPKGSDLLVRHRLSFEAMFNGSEE"
BASE COUNT         1425 a         1451 c         1683 g         1657 t
ORIGIN      
        1 cgtgttcgtg caggttcgag tgagattagt cgtggtagtg caccgttgtc tgacttgact
       61 atcattcaga gcaatgcaat gtggagtggg aagatagatt tcactgatgg aggggccaca
      121 cccctccttc caggctacat cgttgatgta tgggtgacag gggcagatcg tgcaggtaac
      181 ccttacgaga atattgccaa ctccgagtta caacccttcg attcttggag gctcgtccgg
      241 attggcccat ctattgacct tccaacctcg gtaattcgat ggtctgagcc gtctcctgtt
      301 ggtggtgaga atgtgactct tagcatagag gggttgaatg atgttgatga ggagggagta
      361 gttcttttcc agattcagca ggagatttct cctggtatat gggccgatgt tgatggcgct
      421 tcaacagaac tccgtatcat ggctggttct acctacaatg cggcgattga tatgactacg
      481 agaacggtcc aggagccaga ggtagagcgc ttccgtctcg ttgctcgaga tggccatatc
      541 gatgtagata tgatgacact tgagtcactt caaatcaagc cgtatctggc tcgtgatggg
      601 gcggcgctcg cggagcaaat tgaggaatca caagtgactt tcttactcta tctcgccgct
      661 ctcttcggct taatattcgg cgcaatcatg cttgtgctct atcgtcaaga gatgaatccc
      721 gaaggtgaag atgactctga gggcggcatc caaggggagg agcagacggc tcttgtcgaa
      781 gcggaaagca aaggaaagtc acgctctcca ccacctcctc catctggagt tgcaatttca
      841 tctcctcctc cacctcctgg cctgaatcaa ccggtttctc ctccacctcc tgccgccgcg
      901 cctcctcctc cagtagttga agcaccaagt caacccgctc cactccagtg gacggatgag
      961 cagcttactg cacagggctg gtcacctcaa cagattgcca cttggcgggt gcagcaggct
     1021 cagaacgcct attcccaagg ttccacgtct acagaggtca ctggtggaaa cactgcagcc
     1081 cgattttccg agcgtgttgt tgatcacgtc atgcggcaac atggaattac agaccgtaac
     1141 gcattccttg cagctgcaga gttcttcgat tctgacggca atcgttatct tacgaccgca
     1201 gagctatcta aggccgcaga agcattgggc gaagtccgtt gagaggcgaa ccaatgtccg
     1261 aggacaggat accaactgag gattctccaa gcacggagaa gatgcttttc cttcaggaga
     1321 acatggtcca tctcgtcaat cagatgtcca tgcctgttat tgaggtgagt ctcgttctct
     1381 caaagtacct caaccgaatg gtagatgagt tagagaagaa ggccgcaatg aatgatgaga
     1441 tcctcccaga aaacgtcctc aatccatggc cgattgaggc tactggggat ttagacacga
     1501 gagggggaat gtctcttgaa cggattcttg agattgtcga tcaggaccgg atggatatcc
     1561 tcgatacact gattcgtact gtcatcaatg caactgaact accgttcatg gatgcagtac
     1621 ttgctcttcg acgttgggaa caactcgctc gaactcaact ttctttcgca tccggtgtgg
     1681 ggcaactgtt ctctccaatg gatctccctg aagagttttg attctcatac tgttatcgtt
     1741 ttggttgctt ctgcgacccg ttcgttagca agccaccatg cgtccacgat tgagtagatg
     1801 tagagtaggg gccacagaag aatagagagg aggagtggga cttggagcag tgtccaatct
     1861 ctggcctttg catgttggcg gttgaagtgt tgtcccaaga acaggaatgg gaccaatgca
     1921 agtccaatgg caattaatgg tcgcagagcg ccccaaggtc cgactcctcc tgagaattcg
     1981 taccagataa tccggaggac attcaacggt gtccgtgctc tacctctgag ttcttcgacg
     2041 atgtcaattc ccacatcgcc ttcgtccatg aggtgacatg aatggcgcct tttgtgaagt
     2101 tctccctcgg atgtgcctta acatccagtt cttggggaat ctcttcatcc tccgttctat
     2161 gggggtgagt catggagacc cggcgtgtcc tgctgactgg cttcgatgtg tttgggggct
     2221 tgtcggagaa catcagttgg caagtcgccg aatttcttgg tgaaacctca tcaatcgttg
     2281 accttggtcc acgggaatca ggtagcggtc aacctctgca tcgggcaata tgtatcgaat
     2341 gggttgctca acggttgagt gtcgacgagg cagggagtcg tactgttgct gaaatgatta
     2401 gtaatggttc gttggatgac ttctcagcga ttattcatct tggtctcgct cgtgatgcca
     2461 aggtaccgcg aattgaatcg caaggaatca atcggaatag attcattgaa gcagataatt
     2521 ccggtcgtac gtctaatgga aaaatcgttg tgaatggccc ggatttaatc tcatgttcag
     2581 tagattctga gtgtgtacgt caagatggtt tgtctacgat ccttgaactg agccatgatg
     2641 caggcggata tgtctgcaat gagaccctct acagaacact gcatgctttg gataaggatg
     2701 cggacaaggt gataccctgt actttcctcc atctgcctcc ttccgaagag atggatttca
     2761 aattacaatt ggacctagtg caacgtgtct cagcaatcgt ggtacagcct cctcacatcg
     2821 aggtagcggg ggcattgttc cgaaatggga atcaatggat ggcaagtcgt cgtgcttcgg
     2881 gacgtcatga aggcctttgg gaattcccag gtggtaaact ggaaccgggc gaaactgtat
     2941 ctgatgcctt aatccgggaa tgcgatgaag aattaggttg ggctatccag cctattcggc
     3001 tctttgaacg cgtattccat gtgtatcctc atgccagtgt ggaattggag ttctggatat
     3061 gtgcgtatga gggggacact ccccctgcac ttcggagtca tactgagcat cgctgggttg
     3121 cgaaggaaga tttggctgaa ctcgattggt tagaggccga tctcccgctg gtcaaacgga
     3181 ttcaatctct cgattgagat ctttcttcat cccattccct tggactcccg tccatttcca
     3241 tgccttgttc atctccaatt ctacgtggca catttcgacg accaggatgg tcagtagcag
     3301 tttcaatcca atatcggata tcatcatgtt ccaacaatat acgaaggtca ccgccgagcg
     3361 acgaatcgcc ctcaagcaca aatccaacct tccccgctag ggctgcctgt cgagagattc
     3421 tgaacattga ggacttgtca gtgatatcca tactcattgc atccattgcc gtatccagaa
     3481 ttctctggtc tcgtagtttc tgaaggaatg atgacaaatc atttgcaggt ccttgtattg
     3541 tcacccaagg ttggcttcga gggtaatctc ctacctcaaa ctccgaatca ggatgaaagt
     3601 ctgggaagag tatgtggata cattccataa ttttcgcagg gtcctcgtga gctccaatcc
     3661 gtgtctcaat ccacacagtt ggttcggcca tgactcattc ttgttgaatc cgggtcatgg
     3721 ctcttgtgcc atagaaacgt gttagtttct gtttaggttg gggaagattg acgcccagag
     3781 ggtggtgcat caggacatgg cggaaccttc ggtgttgacc gtcatccccg ttctgaatga
     3841 ggaattacac cttgatcgtt gtctccgttc tattcgttca cagactctga ctcgtgatca
     3901 gcatcgtgtt ttagtgctag atgggggttc gaccgatagt acccgtgaga ttgttttgca
     3961 acatgtgcgt gagagcatgt ctggtgaggg gccagtcgtt gaattactcg ataaccccgg
     4021 cgttcatgtt cctcatgcaa ggaatctcgc actcaagaag gtcgatggtg agtcccatat
     4081 gtttgagatt attggacacg cttgggttcc ccctgaacat ctggagaata ggctagctga
     4141 tcttcaagaa gctgaagagg aaataggtcg gtcaattgga tcgatgggga cgagaatcat
     4201 tccagaggtt acgggtgggt catgggagga agcaagtatc gaggctcttc tctcatcccc
     4261 tcttggaggg agtggccagt ttgcacgatt caaaggccgt tcggttgctg aatctcctgc
     4321 tttttgtcta catcgtgttg aagccattca agacgtgaat ggttgggacg agcgttgggt
     4381 agttgggcaa gatcgagatc tgaatcttcg cattgcaaag gctggttggc tggtgatgcg
     4441 gtctgatgca tcgtatctcc atatggctaa gcgaaggagc ttctcttcac tatgggggat
     4501 gggccatcgc tatgggtact ggcgagctag gcaggcaagt gtctcggtct ctcgtcttcg
     4561 tgtaagagaa ttcctgccgt ggtttgggtt tcttgcggta atctgtggat ttgccctttc
     4621 aagtgaggtc gatggctcaa tttatctttc actatatttg gtgacgtcct atgcatctgt
     4681 tgctctttta gtcggattat tggaagcggt acgcttccgt cacatttctc ttattctagg
     4741 ggttccgcta ggattggtga ttctgcatat ctcattcagt ttggggctgc tccgcggtgg
     4801 gctgaaacaa cctcctccag cgaatgagcg agtcaagagc gcgaatcatt gaagcggcat
     4861 cgtcacaaca caggctcatg gaggaaaaga atcgctggac ttcagtcgtc ctcttcctct
     4921 ctgcaccatt catcttcctc attatctcaa atcaaggccc tcctgctgta gggctacttc
     4981 tgaacgagac ctcatgggcg ccgtttgctt actatggaat atcctttgga atcggttacc
     5041 tgctcttccg ccgttctcgt gtcgtgaagg atatggaatg gcatcgttcg aagagtattc
     5101 agcgtctcga caaggtctac cgtgccgagg atcggggtgt atggcttcgt gccgatgctg
     5161 ctgacgaacg attgacggtt gaggcccaac gtcggccagt cgactctcgc cctaaggttg
     5221 ctgcgcgcct tcaaggatct attgcgggtg tcaatcgaga gggtgagccg gaagagattg
     5281 aatcctcatc agaggatgta gagaatgtcg aattatttct tgaactagag catgtggttc
     5341 gtagcactga gcgtgtcact ggaaagagtg gtccagtaga gagcgtgaaa ggggtcacga
     5401 aggatatccc tccacaggaa tctgatggct tagtcagggc agctctctct aagttagcac
     5461 gggctaggga gagagcagca atggaacaaa tagaatccat gtctaagggc gaacgtaaga
     5521 cacgttcttc ccctagtgtt gaatctacgg catctgctcc acaagtgaga gttatccgtg
     5581 gccaggatta tgatccatca ccttcgaacc ttgatgcaca ggttgattct aatccagttc
     5641 aaaatagtga gccagtacgc gcgttaaggc gttgcgtcga gtgtggttcg gcaatggtgg
     5701 acaatgatcc ctactgccca aagtgtggtg cctttgctct ttgagcccgg gaacggttga
     5761 aagggggtgc cttcacctcg ttgcacgggg agtgcttcat gtctgagaag agggactact
     5821 acgaagtcct tggtgttgac aagaaggcaa cggatcagga actcaagaaa gcattccgtt
     5881 cacttgcgag aaagtatcac cctgacaaga atccggatga tgaagaggca gaggcgagat
     5941 tcaaggaggt tcaggaggcc tatgcgattt tatctaattc agatcagcgc cgtcagtatg
     6001 acacattcgg ccataatcgt ccagggggcg atccattcag tggtggattc caaggggtga
     6061 acatcaactt cgaggatatc ttcggtgatg gtcttgactc gattttcacg caattcttcg
     6121 ggggtgggcg gcagaggcgc cgtgaaccga agggtagtga tttgcttgtt cgacatcgcc
     6181 tctctttcga agcgatgttc aatggttcag aagagg
//
LOCUS       DUKB01000054            3499 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_309801, whole genome shotgun sequence.
ACCESSION   DUKB01000054 DUKB01000000
VERSION     DUKB01000054.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_309801"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="HA345_01950"
     CDS             complement(<1..357)
                     /locus_tag="HA345_01950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84152.1"
                     /translation="MAEDVSTVGEIIGILLIPIFIILLTLGPYFLSAIVGSFHQNGLR
                     KRLEIRKQVTLSSFPMDPIHSLSRPANVNHSIQSSGLVMANVSISPSWWQMFVVSIHS
                     LFGGNISTLDSVIRWGR"
     gene            complement(367..705)
                     /locus_tag="HA345_01955"
     CDS             complement(367..705)
                     /locus_tag="HA345_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017297450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HIH84153.1"
                     /translation="MSVVPQGQLMLSNTENIPGFTIAQTLGLVTGSTVRAKNVFKDIG
                     AGFKSVVGGELRAYTELLQEARNEALNRMMQDAMSRNANGVVNVRFATSSVAGGAAEL
                     FAYGTAVIIQ"
     gene            812..2299
                     /locus_tag="HA345_01960"
     CDS             812..2299
                     /locus_tag="HA345_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HIH84154.1"
                     /translation="MLPRVFAMVFLMLAMPMSGCLGSDEAPPAIIADDSAPTTFVTGS
                     DGLPVDEVLIPMQFMFSDVGEGGPEPSIGITSSGCMFFIAMEKPMRSCDYGLTWENTA
                     DITQAPFTSDPYGWVDPVTDRVFNIHMMGLESTWIGWSDNDGESWLGNPHDSGPLPLN
                     DHIKLATGPWVDSVYGTPGSISPIYDEAVYFCYNKLAGIFCYTSFNGGASFEVGGLIV
                     GLATTNGGLHGAITTAPDGTVYLPPRVSTPSIIFSKDNGMTWEERTMGEDVGTPNPRK
                     NSEVATDTESNAYHIWTGADFGVYMSRSTDSGETWEQTSTRISPVEIISNTFPQVDAG
                     DPGRIAITYLGSQNSSALGEPDIDGGAWTGNPHYATGNVSYDLYVTFSLNALDPEPTF
                     HTYRLTDDPVQIGSICLNSGDCRDIGGSNRNLLDFNDLHIDRDGRVYIAFADGCTGPC
                     ATGNASTPEDSRDRLGSVYYLADGPSLYADIDNLDPLIDPSEMEE"
     gene            complement(2720..>3499)
                     /locus_tag="HA345_01965"
     CDS             complement(2720..>3499)
                     /locus_tag="HA345_01965"
                     /inference="COORDINATES: protein motif:HMM:NF014035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HIH84155.1"
                     /translation="LPTNCLQLMDHGNEAMIELVAIAVATILVAALTVPAGFGLSTML
                     TPLVLLLMGPHEAVAVIAIVHGAHNAGKFAALKEHVDFSAFKRYGIWLVIGSIFGALL
                     QNQFPQDPLLAIIGVFLVILPLLTMSENWAGYRIPEVNDRFGGFGSGFMGGLSGHQGA
                     LRAMFLTRRLPDKMAYAATASILALCVDISRIPVYLIFRYEDIIHYSMLTLVLVFSAL
                     VGVGLGKKWLTSLKSEWIQKGVMFSIVVSGIFFIYESNIVL"
BASE COUNT         1008 a          875 c          787 g          829 t
ORIGIN      
        1 acgcccccat ctaatcacac tgtctagcgt ggatatattg ccgccaaata acgagtggat
       61 actgacgaca aacatctgcc accaagaagg agaaatagat acgttcgcca taactagacc
      121 acttgactga atcgagtgat taacattggc aggcctagat agagaatgaa ttggatccat
      181 ggggaaactg gagagtgtga cctgcttacg aatctcaagg cgcttccgaa gaccattctg
      241 gtgaaatgac cccacgattg ccgagagaaa atatgggcct aaagtcagca aaataatgaa
      301 aattggtata agcagaattc ctatgatctc accaacagtc gagacatctt ccgccatgtg
      361 aattcctcac tggattatga ctgcagtccc gtaagcgaaa agttcggcgg ctccacctgc
      421 aactgaagaa gtagcgaatc taacattgac aacgccgttt gcattgcggg acatggcatc
      481 ctgcatcata cgattcagag cctcgttgcg agcctcttgt aacagttcag tgtaagcacg
      541 caattccccg cccacgacac tcttgaaccc ggcaccgata tccttgaaga cattcttcgc
      601 tcgaacggtc gaaccggtaa ccagtccgag ggtttgggct atcgtaaaac cgggtatatt
      661 ctcagtgttg gaaagcatca attgaccttg aggaactaca ctcatgcaca ctattcgtga
      721 cgagaaggca tgtgaaagtt atcttgaaac gtgaaaaaaa aagaggtaaa cacaagcgca
      781 aggtattcat caaagatgct ctagaacacc catgctcccc cgagtgttcg cgatggtttt
      841 cctgatgcta gcgatgccca tgtctggttg tctcggtagc gacgaagcac cccctgcgat
      901 catagccgat gattccgcac ctaccacctt tgtaactgga tctgatggac tgccggtgga
      961 tgaggtgctc atccccatgc aattcatgtt cagcgatgtt ggagagggtg gcccagaacc
     1021 gagcattggg attacctcgt cggggtgtat gttcttcatc gcgatggaga aaccgatgcg
     1081 ttcctgcgac tacgggctaa cttgggagaa tacagcagac atcacacagg ccccctttac
     1141 cagtgatccc tacggatggg tcgatccagt aactgaccgt gtattcaata tccatatgat
     1201 ggggttggaa tccacttgga taggatggtc ggacaatgat ggtgaatcgt ggttaggcaa
     1261 cccgcatgat tcaggtccat taccactcaa tgaccacata aaactcgcca cgggcccttg
     1321 ggttgactct gtctatggga cccctggaag tatctcccca atctacgacg aagcggtcta
     1381 tttctgctac aacaagcttg caggaatctt ctgctacaca agtttcaatg gtggcgcttc
     1441 atttgaagta gggggtctaa ttgttggact cgccacaacc aacggaggcc ttcacggcgc
     1501 cattactacg gcacctgacg ggacggtcta tctcccacct cgcgtctcta ctccctcgat
     1561 tattttctcg aaagacaacg gaatgacctg ggaagagcgt accatggggg aagatgtcgg
     1621 cactcctaat ccacggaaaa attcggaagt cgcgaccgat actgaatcga atgcatacca
     1681 catttggact ggggccgact tcggcgttta catgtcacgt agcacagact caggtgaaac
     1741 ttgggagcaa actagcactc gaatcagccc ggttgaaatt atctctaaca cattccccca
     1801 ggttgatgca ggcgacccag ggagaattgc catcacgtac cttggtagcc agaactctag
     1861 tgcactaggt gaaccggaca tcgatggtgg agcctggact gggaaccctc actatgcaac
     1921 tggaaatgtg agctacgatt tgtacgtcac gttctcactc aacgctctcg atccagaacc
     1981 taccttccac acctaccggt tgaccgatga cccagtgcaa ataggatcaa tttgccttaa
     2041 cagcggtgac tgccgcgata tcggcgggtc caatcgaaac ttactcgact tcaatgatct
     2101 gcatatagac cgagatggac gcgtgtacat cgccttcgca gatggatgta cgggaccttg
     2161 tgcaactggt aatgcctcga ccccggaaga ttcgcgtgat aggctcggtt cagtgtatta
     2221 tctcgcagac ggccccagtc tctacgcaga catcgacaat cttgacccac ttatcgatcc
     2281 atccgagatg gaagaataga aaatgactac tatggataaa tctgtgagaa taatttgtaa
     2341 tcgattattg gttcggcgaa attatcgcca ataacgctgc aatcatccaa acaagttcta
     2401 gaattacaaa tgcccattca cctgtatgta gagctctgat tcccaagatc gctgaaccta
     2461 cagccattaa actgagatat ttcaaaccgc gactgttgag atagcccctg gtctctaaaa
     2521 caaaggcgaa caaaatacaa agcataccaa gaaaggatgc aacactggta actggttcaa
     2581 ggttcgaaaa ggcaatagta gaggaagtca tcgatacttt ctcgcaagac agtatcaatt
     2641 atctttgcag tgaaactaag gcttcaaaac cgatttatgc cactcgtatt ccccagcatt
     2701 agaactctaa cttttcaatt taaagaacga tatttgattc gtaaatgaag aatatgccac
     2761 taacaacaat actgaacatt acaccttttt ggatccattc ggacttaaga gatgtgagcc
     2821 atttcttacc taatccgaca cctactagtg ctgagaaaac aagtactaat gtaagcattg
     2881 aataatggat tatgtcctca tatcggaata tcagataaac cgggattcgc gatatatcca
     2941 cacataatgc aagtatgcta gcagttgccg cataggccat cttatctggc aatctacgtg
     3001 ttagaaacat agctcgcaat gcgccttgat gcccagataa tccacccata aatcctgacc
     3061 caaaaccacc gaaccgatca ttcacctccg ggatacgata cccggcccaa ttctcgctca
     3121 tagtgagtaa tggaagaatc acaaggaata caccgatgat tgctaacaag ggatcttgtg
     3181 ggaattgatt ttgcaacagg gccccgaata ttgaacctat aacaagccaa atcccatacc
     3241 tcttgaaggc agagaaatca acatgctcct tcaatgccgc aaattttcct gcattgtgcg
     3301 caccatggac tatagcgatt acagctacag cttcatgagg ccccattagc aagagaacca
     3361 ggggtgtgag catggtcgac aaaccgaatc ctgcagggac agttaaggcg gcgaccaaaa
     3421 tcgtcgccac tgcgatcgct acaagttcta tcatcgcttc atttccatgg tccatcaatt
     3481 gtaaacaatt ggtaggaag
//
LOCUS       DUKB01000055            8644 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_50899, whole genome shotgun sequence.
ACCESSION   DUKB01000055 DUKB01000000
VERSION     DUKB01000055.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8644)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8644)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8644
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_50899"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1651)
                     /locus_tag="HA345_01970"
     CDS             complement(<1..1651)
                     /locus_tag="HA345_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84156.1"
                     /translation="MPYRIKPIRRIPCESRVRACDLSPDGSLLHWTDDDSMLIRTPTM
                     DSDSEATMTRLEEEGDHIVALSNGISIIGLISKDVICIDAEGNENWRVNVAGGVDILA
                     HTPDKTRFLVVDGMRQATLFDSQGVAQTKQLRGETCIAALRDDGGAFAIADDEGVIHL
                     INANGEDIAMMGPRTEQADRITQMAFKPDGVLVVSSECIGLTDAETPQTVIQCFSESG
                     EIIHTNEIDSPASSLFGTLTGVLAGLENGDVIEYQVGSDEATVWARLGYEIKDVRAHD
                     DDLLIGAWFHLRRFMAPMDEAWAVEHPGLIDRTVSDAGGRLIAISGDNRNDYTRIDRI
                     DLYDPDAVRIEIDETDIDGMLDEDPDLFGGALSGAGSMDIADALENTSVASSEDFEDI
                     ENILTDEEMEEYSHSTTTDGQLEDILSDLEDKFDTENEEESVESEANELLENIIDDDS
                     FSAQPPIVDSGEDRQIEASEDGTVTVTLDGRSSQSVDGNIERWEWRNDEGKPIGDAPA
                     IKVRLKPGRHSFTLTAETDRGTAASDTVTIHVLGEDNEKDVL"
     gene            complement(1699..3234)
                     /gene="purF"
                     /locus_tag="HA345_01975"
     CDS             complement(1699..3234)
                     /gene="purF"
                     /locus_tag="HA345_01975"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008938443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HIH84157.1"
                     /translation="MCGIIGILSSSDQQVRQQIYDGLLVLQHRGQDAAGIVTCDGERF
                     HQRKSNGLVGDVFRQSHMDLLGGPMGIGHVRYPTAGSSSSAEAQPFYTNSPYGMALAH
                     NGNLTNAQDLLHELIHQDRRHVNTNSDSEVLLNVLATELERAHATRIEGEIYLDCDDL
                     FDAVERVHTRVEGSYAAVTVLSGYGILAFRDPLGIRPLIHGVREDSNGSTHVFASESV
                     VLTALGCQIVGDVAPGEAVFIDESGRILRRVCHPEPRLNPCIFEHVYFARPDSVIDGI
                     SVYESRIQMGERLARRILAEHPNHEIDAVMPIPDSGRISAMEVARTLGVEYREGFVKN
                     RYVGRTFIMSGQKIRQDSVRKKLNPIPHEFAGKRVLLVDDSIVRGNTSRKIVQLARDV
                     GAKEVFFASAAPPVLHPNVYGIDMPAKQEYIAHGRTIQEITDAIGADWLIYQTLEDLE
                     AAVTDAGGSKVTKFDTSCFTGQYVCGTITPEYLASVEGARNDEAKKASSSTNQTLEIH
                     NQE"
     gene            complement(3295..3477)
                     /locus_tag="HA345_01980"
     CDS             complement(3295..3477)
                     /locus_tag="HA345_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014866012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37e"
                     /protein_id="HIH84158.1"
                     /translation="MSKGTPSMGKRQKIVHFRCRRCGRHSYHKQKRACASCGYGVTAR
                     RRKYQWSKRNRLIGSK"
     gene            3598..5556
                     /locus_tag="HA345_01985"
     CDS             3598..5556
                     /locus_tag="HA345_01985"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012632.1,HMM:NF024930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84159.1"
                     /translation="MGTARTALLLSLLFVFLPLSIIPAEEPQSLEVSCNSNVVNAGQE
                     VECTLDLSAVQGVSTLRFEFVLESQTSSSDSSVLSVGHHHTCSILENGTAICWGHDGY
                     EQLGDGGDSSRHTRPSTPVSPPSDEKFDSIYSNHHRTCALSTGKNLFCWGQNDHGETG
                     DGTSNVYSSPTNAVGFPVNRTVVDVGMGDYHTCAILDDRSLNCWGHDGDGKLGNGADE
                     TSVQYSPVSVSIPEERNPIDVEAGKTHTCVLFDDGGIMCWGRDHVGQNGDAGSGATTH
                     LPGSNVVLPAGRSAIDLSVGAFHACAILDNSSIACWGWNAYGQIGDNTTIDAISPVLV
                     KLPIGAKATDVDAGYYHTCAALENGSVSCWGRNNWGQISDLGLSYMPRHVNGTESTVN
                     VAASEMHTCALADNGTISCWGENGNGQLGIGSTSDKYQPHQLDWSAAPFASISGSAPI
                     GEWEDHSAMRGRLNSNNGGIWNVSFSVPESTVLGPYSLKISMLKIGGIRSSINLDNVV
                     QIIGVDTDRDGVVDAEDSFPSDPDENSDRDGDGVGDNSDVFPDDPTETLDGDGDGVGD
                     NTDAFPIDPTEWKDSDSDGVGDEADFYPYDASKSNSPSTWMILAPVGALLSLLFLVMF
                     IRVWTRNPSDGEAPTRKFRGRRNPDRKF"
     gene            complement(5563..5988)
                     /locus_tag="HA345_01990"
     CDS             complement(5563..5988)
                     /locus_tag="HA345_01990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84160.1"
                     /translation="MSLRRLSGAGIGTATAVIIALMMIEGEESPAIEDRLRSILMQAL
                     WTAMIAWMIIAGSMLGLLGRGRAPWLQIGGLLFLSLSTLGILAIIGEIPTEDVLGGLT
                     IRWAGLATGVMIVLGYVLATLTASMDEEEDPLLILGREQ"
     gene            complement(5985..6746)
                     /locus_tag="HA345_01995"
     CDS             complement(5985..6746)
                     /locus_tag="HA345_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84161.1"
                     /translation="MDTPSAVFWMLLFVGLPSILTLWTHRSESIQRRVFIPLSILVLI
                     GLGLTATNSTGGQVGGIAEIGPYVVGIVGILCIGIYLMVFGGVTPVGPVPRGWRTTGG
                     LLMISAVTLGGILTIDPEWSPLTTPNGWDSYAASGIVGLITASLFGAVIVWLYGDQRW
                     IALIGLILTTSLGLIGALLLIESSIITKTDISEALTTAIGSTFGLLIAAILAIGLMVQ
                     IESKAVVPRTSPPLSKGEIERMEQLIQANVRSEQE"
     gene            6888..7169
                     /locus_tag="HA345_02000"
     CDS             6888..7169
                     /locus_tag="HA345_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004589832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HIH84162.1"
                     /translation="MKMPRKVKRYSPSAGRHTEHTVERVKKRRASELKWGQRRFRRVT
                     AGYRGFPRPKPEGREKPTKRINLIFRCTETGKAHSPAGQRAKKFELVDK"
     gene            7181..7351
                     /locus_tag="HA345_02005"
     CDS             7181..7351
                     /locus_tag="HA345_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008416573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27e"
                     /protein_id="HIH84163.1"
                     /translation="MVGRFLRVTCKDCGNETVIFERASTAIDCGVCGAVLAQPAGGKA
                     KLVGCEIQEALE"
     gene            7367..8155
                     /locus_tag="HA345_02010"
     CDS             7367..8155
                     /locus_tag="HA345_02010"
                     /inference="COORDINATES: protein motif:HMM:NF003064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     alpha"
                     /protein_id="HIH84164.1"
                     /translation="MSSEIEYPEEGEFVVVTVQGIEKNGAYLSLQGYSDDIRAFVFIG
                     EVSSGWVARVRDHLREGQRTVARVTRVKKDRRSVDVSIKSVSDERRRETLQDWKNEQR
                     ASQLLRIISERAGWSDSDYESIGLQLSETFGGLYGAFEAAAAAPESLAEFGFEGDWIP
                     MLVETALENIVPASVIIRGRFHIEVWSDKGVEAIQIALGAAEDVAEGMEEVQVDCYYD
                     GAPEYRIEVVAPDYKSAEKAYEDAREAVSSHIKKAGGHFELHRE"
     gene            8230..8445
                     /locus_tag="HA345_02015"
     CDS             8230..8445
                     /locus_tag="HA345_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012571196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis protein"
                     /protein_id="HIH84165.1"
                     /translation="MARSRLQKCQSCGQYGLGKECNECGGPMLAAAPIKFSPEDKQGE
                     RRRERKQVGKGEWSSVLPTLDPRGEEE"
     gene            8442..>8644
                     /locus_tag="HA345_02020"
     CDS             8442..>8644
                     /locus_tag="HA345_02020"
                     /inference="COORDINATES: protein motif:HMM:NF021287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84166.1"
                     /translation="MNRSITHWCGDSDEIPQEMVILLALPGVGNVGKVLADAIIEEHQ
                     SDLIAWIMHPDLPPHATLVDGLLR"
BASE COUNT         2070 a         2036 c         2184 g         2354 t
ORIGIN      
        1 ccaagacgtc cttttcattg tcttcgccta gaacatgtat ggttaccgtg tcggatgccg
       61 cagttcctcg gtccgtctcg gcagttaggg tgaacgaatg acgtcctggc ttcaatcgta
      121 ccttaatcgc gggcgcatca ccaattggct tcccttcatc gtttctccat tcccaacgtt
      181 cgatgtttcc atcgacactc tgagaactcc ttccatctaa ggtgacagtc acggttccgt
      241 cttctgatgc ttcgatttgg cggtcctcgc cggaatcgac aatcggcggt tgtgcactaa
      301 acgaatcgtc gtcgataata ttctcaagca gttcatttgc ttcgctttcc acagattcct
      361 cttcattttc tgtatcgaat ttatcctcaa gatcggacaa gatatcctct aattggccat
      421 ctgttgtagt agaatgagaa tattcctcca tctcttcatc ggtgaggatg ttctcaatgt
      481 cctcaaaatc ctcgctagat gctactgatg tgttctcaag ggcgtcagcg atatccatcg
      541 atcctgcccc gctaagagca cctccaaaca agtcagggtc ctcatccagc atgccatcaa
      601 tatcagtttc atcgatctca atacgtactg catctgggtc gtatagatcg atacggtcta
      661 tgcgtgtgta gtcgttccga ttgtcgccag agatcgcaat caatctcccc cctgcatcgg
      721 atactgttcg gtcgattagt cctgggtgtt caacagccca tgcttcatcc ataggtgcca
      781 tgaatcgtcg gaggtgaaac catgccccga tgagaagatc gtcgtcatgg gcacgtacat
      841 ctttgatttc atatcctagc cgagcccaca cggttgcttc atctgatcca acttgatatt
      901 cgatcacgtc accattttca agacccgcga gtacacccgt caatgttcca aatagagatg
      961 aagccggtga atcaatttca tttgtgtgga ttatttcacc cgattcagag aagcattgaa
     1021 tcacagtttg gggcgtctct gcatcagtca aaccaataca ttctgatgat acgactagga
     1081 ccccatcggg cttgaaggcc atttgcgtaa ttctatccgc ctgctctgtc ctcggcccca
     1141 tcattgcgat atcctcgcca ttcgcattga tgagatggat tacgccttca tcatcggcga
     1201 ttgcgaatgc accaccatca tctctcaggg ctgcgatgca ggtttcgcca cgcaactgtt
     1261 tcgtttgtgc caccccttgg gaatcaaaga gggtagcctg tctcatccca tctactacga
     1321 gaaatcgggt cttatctggc gtgtgggcaa ggatatctac tcccccggcg acatttacac
     1381 gccagttctc gtttccttca gcatcgatgc aaataacgtc tttcgaaatt agtccgatga
     1441 tggagatgcc atttgatagt gctacgatat ggtctccttc ttcttcgagt cgagtcatcg
     1501 tggcttcact atcactatcc attgtaggtg tgcggatgag cattgaatcg tcatcagtcc
     1561 aatggagtag cgacccatct ggacttagat cgcaggcacg cactcttgat tcgcagggga
     1621 tgcgccgaat cggcttgatg cggtagggca tagtccgcat tactggtgag gggatttagc
     1681 gatgtccgta tcttgctctc attcctgatt atgaatttca agggtttgat tagtggatga
     1741 tgatgctttt tttgcctcat cattcctcgc tccttccact gatgccaggt attccggagt
     1801 gatagtccca cacacatatt gtcccgtgaa gcaagaggtg tcgaatttgg tgaccttgct
     1861 tcctcctgcg tcggttacag cggcttcgag atcctccagt gtttggtaga tgagccaatc
     1921 agctcctatg gcatcggtaa tttcctgaat tgtccgccca tgtgcgatgt actcctgttt
     1981 tgctggcata tctatgccgt acacatttgg atggagtacg gggggtgccg cgcttgcaaa
     2041 gaatacttct ttcgcaccaa catcacgagc gagttggacg attttccgag aggtatttcc
     2101 tcttacgata ctatcgtcca caaggagaac acgttttcct gcaaattcgt gagggatagg
     2161 gttgagtttc ttcctcacac tatcctgtct aatcttttga cctgacatga taaatgtcct
     2221 tcctacatac cgatttttta cgaatccttc tctatactca acgcctagag ttcgtgcgac
     2281 ttccattgca gaaatcctgc cgctgtcagg aattggcata actgcatcaa tctcatgatt
     2341 cgggtgttct gccagaatcc ttcttgcaag ccgttcaccc atctggatac gggattcata
     2401 gacggaaatc ccatcgatta cagaatctgg acgagcgaag tagacgtgct caaaaataca
     2461 gggatttagt cgaggttctg ggtgacagac acggcgaaga attctgccac tttcgtcgat
     2521 gaatactgct tctccaggtg ctacatcgcc cacaatttgg cagccaagag cagtgagaac
     2581 cacgctctcg gacgcgaaaa catgtgtcga accattcgaa tcctctctaa caccatggat
     2641 gagagggcga attcctagag ggtcacggaa ggcgaggata ccatagcccg atagaactgt
     2701 tacagcggcg tacgaacctt cgactcgagt atgtacgcgt tctacggcat cgaagaggtc
     2761 atcacagtct aggtatatct cgccctcgat tcgagttgca tgcgcgcgct caagttcagt
     2821 agcgaggacg tttagcagaa cttctgaatc gctatttgtg tttacatggc gccgatcttg
     2881 gtgaattaac tcatgcaata gatcctgagc attcgttaga ttgccattgt gtgctagtgc
     2941 catgccatat ggggaatttg tgtagaatgg ctgtgcttct gcagaagatg agctacctgc
     3001 tgttggatat cggacatgcc ctatgcccat cgggccgcca agaaggtcca tgtggctttg
     3061 acgaaacacg tcgccgacta agccgttgga ttttctctgg tggaatcgtt caccgtcgca
     3121 ggtgacaatt cctgccgcat cttgcccgcg gtgttgtagc actaggagtc catcgtaaat
     3181 ctgctgtctg acttgttggt cagacgatga gaggattcca atgatgccgc acatgggtcc
     3241 tcaacttgtt agtcgtgcgg ccgccttatg gacattgagt gagcggatgc gaaatcactt
     3301 actgccaatg aggcggtttc gcttggacca ctggtacttg cgtcggcgag cagtcacgcc
     3361 atatccgcac gaagcacagg cgcgcttctg cttatgatag gagtggcggc cacagcggcg
     3421 gcacctgaag tgaacgatct tctgacgctt acccatggat ggagtgccct tactcattcg
     3481 ctcacctcag caacctcgcg actttgcatc ttcttatgag gcttaccaaa gtgaaataat
     3541 tgaatttcga ccaatattat cgaatgtttt gaaacctagc cctcttgagt tcgcgttatg
     3601 ggcacggcac gcaccgctct tttgctttct cttctttttg tctttcttcc gctttcaata
     3661 attccggcgg aagagcctca gtctctcgag gtctcctgta attcaaatgt agttaatgct
     3721 ggacaagaag tagaatgcac attagatttg agtgcagtcc aaggagtttc tacccttcgg
     3781 ttcgagtttg ttcttgaaag tcaaacttct tctagtgatt catcagttct ttctgtgggc
     3841 catcaccata cctgttccat cttggaaaat ggaactgcaa tttgttgggg tcatgacggt
     3901 tacgaacagt taggggatgg aggcgattct tcgagacata ctcgtccttc aactcctgta
     3961 tctcctccga gtgatgaaaa attcgattca atttattcta atcatcatcg aacatgtgca
     4021 ttatcaacag gaaaaaatct tttctgttgg ggtcagaatg accatggtga gaccggagat
     4081 ggtacttcga atgtttattc ttcacccact aatgccgttg gctttccagt gaacagaaca
     4141 gtagttgatg taggaatggg ggattatcac acctgtgcga ttctcgatga taggtcattg
     4201 aattgttggg gtcatgatgg agatgggaaa cttggtaatg gagccgatga aacctctgta
     4261 cagtactcac cagtatctgt tagcattcct gaagaacgta atccaattga tgtagaagcc
     4321 gggaaaaccc atacctgtgt cctctttgat gatggaggga taatgtgttg gggtagagat
     4381 catgttggcc aaaatgggga tgcaggaagt ggtgcaacca ctcacttgcc aggttctaat
     4441 gtggtattgc ctgcaggacg ttcagcaatt gatttatccg ttggagcatt tcatgcatgt
     4501 gcaattttag ataattcatc gatagcatgt tggggttgga atgcatatgg tcagatagga
     4561 gataatacca ctattgatgc aatatctcct gttttggtca aattacctat tggagcaaaa
     4621 gccacagatg tagatgctgg ttattaccat acatgcgcgg ccttagagaa cgggtctgtg
     4681 agttgttggg gtagaaataa ttggggtcaa attagtgatt taggtttgag ttatatgcct
     4741 cgtcatgtta atggaaccga atctactgtt aatgtagccg cttcagaaat gcatacttgt
     4801 gcccttgcag ataatgggac aataagttgc tggggagaga atggtaatgg tcaacttgga
     4861 attggttcaa ctagcgataa atatcagcca catcaattgg attggtccgc tgctccattc
     4921 gcatcaatat caggttctgc tcctatcggt gaatgggaag atcattcagc tatgcgtggc
     4981 cgactaaatt ctaacaacgg tggtatatgg aacgtcagtt tttcagtacc tgaatctaca
     5041 gtattaggac catattctct gaaaatttca atgctcaaga ttggagggat tcgatcttct
     5101 atcaacttag ataatgtagt tcagataatt ggagtagata ccgatagaga tggagttgta
     5161 gatgcagagg attccttccc atctgatccg gatgaaaatt cggatcgtga tggtgatggg
     5221 gttggtgaca attctgatgt ctttcctgat gatccaactg agaccttgga tggcgatggc
     5281 gatggtgtag gagacaatac cgatgccttc ccaatcgacc ccactgaatg gaaggattca
     5341 gattcagatg gtgtaggaga cgaggcagat ttctacccct atgatgcaag taaatccaat
     5401 tcaccctcta catggatgat tctagcacct gtgggggcac ttctttccct tctgttccta
     5461 gtcatgttca ttcgagtatg gactcgaaat ccttcggatg gcgaagcgcc tactcggaag
     5521 tttcgtggac ggagaaatcc tgatcgcaag ttctgagatt aatcactgct ctcgtcctaa
     5581 tattagaaga gggtcctctt cttcatccat cgatgctgta agggtggcaa gtacatatcc
     5641 taatacaatc atcactcctg tagctaatcc ggcccaacgg attgtcagtc ctccaagtac
     5701 gtcctccgtt ggtatctcgc cgatgatagc caagatgcct agagtcgaga gtgagaggaa
     5761 aagtagccct ccaatctgta accatggggc ccgtcccctc ccgaggaggc ccagcatcga
     5821 tccagcgata atcatccagg cgatcatagc cgtccaaagt gcttgcatga ggattgagcg
     5881 aagtctgtct tctatcgctg gagattcctc accttcaatc atcatgaggg cgataatgac
     5941 ggctgttgca gtaccgatcc cggctccaga taatcttcga aggctcattc ttgctcactc
     6001 ctgacgtttg cttggatgag ttgctccatt cgttcgattt cccctttact caagggagga
     6061 gaggttctcg ggacaactgc tttggattca atctgtacca tcagtccaat tgccaatatc
     6121 gctgcgatga ggaggccgaa tgtacttcca attgcagtag ttaacgcctc gctgatatca
     6181 gtcttggtga tgatacttga ttcaatcaag agtaatgctc ctatgaggcc gagagatgta
     6241 gttaggatta ggccaattag tgctatccag cgttggtctc catacaacca tacgattacc
     6301 gctccgaata gagaagctgt gatgaggccg actataccgg aggctgcgta cgaatcccat
     6361 ccattgggcg ttgtgagcgg gctccattcc ggatctatcg tcaggatgcc tccgagggta
     6421 actgcggaga tcatgagtaa gccacctgta gttctccagc ctcttggtac tggaccaaca
     6481 ggagtgaccc caccaaatac catcagatat atcccgatac agagaattcc aacaatccca
     6541 accacgtacg gtccgatctc tgcgatgcct ccgacttgcc ctccggtgga attggttgct
     6601 gtcagaccca atccaattag gactaggatg gagaggggaa tgaatacacg ccgttgtata
     6661 ctctctgagc gatgagtcca gagtgtcagg atgctaggga gtccaacgaa gaggagcatc
     6721 cagaaaaccg ccgagggggt atccatgatg ttggatacaa tggaacaaag caatgaacgt
     6781 tgatgcctcc agagggtgta gagtgcgtgc aatagcattg cgacacttcg cgacacgctc
     6841 aaataggggc cgatggtcgc cgagacgcta cagaggtgaa acgcatggtg aagatgcccc
     6901 ggaaggtcaa gcggtacagt ccttccgctg gtcgtcatac cgagcacacc gtcgagcgcg
     6961 tcaagaagcg ccgagcctct gagctaaagt gggggcaacg tcgtttccgg cgtgttaccg
     7021 ctggttaccg tggtttccca cgtcctaagc cagaaggtcg cgagaagcct acaaagcgaa
     7081 ttaatctcat cttccgctgc actgagactg gaaaggctca ctctccagca ggtcagcggg
     7141 ctaagaagtt cgaattagtg gataagtgag ggtgtcaaac atggtcggtc gtttccttcg
     7201 agttacctgt aaggactgtg gtaacgagac cgtcattttt gagcgggcat ccacagctat
     7261 cgactgtggc gtctgtggcg ctgtccttgc acagcccgct ggcggtaagg ccaagcttgt
     7321 cggctgtgag attcaagaag ccctcgagtg atcgggggcg tccaagttgt cttccgaaat
     7381 tgagtatcct gaagaaggcg agttcgtagt agtcactgtt caaggaattg agaagaacgg
     7441 agcatatctc tcccttcagg gatactctga cgatatcagg gccttcgtct tcattggtga
     7501 ggtcagttcg ggctgggttg ctcgtgttcg agatcatctt cgagagggac agagaaccgt
     7561 tgctcgcgtc actagggtca aaaaagatcg gcgtagtgtt gatgtctcga ttaagtccgt
     7621 ctccgatgag cgtagacgtg agacgctcca agattggaag aatgagcagc gagctagcca
     7681 gttgctacgg attatctccg agcgcgcagg atggtcggat agtgattatg agtccatagg
     7741 tctccagtta tcggagacat ttggtggcct ctatggtgct tttgaggctg cggcggcggc
     7801 acctgaatct cttgcagagt ttgggtttga gggcgattgg ataccaatgc tcgttgagac
     7861 tgcccttgag aatatcgttc cagcaagcgt catcattcgt ggccgcttcc atatcgaggt
     7921 gtggtcagac aagggagttg aggccattca aatcgctctt ggtgcggctg aagatgttgc
     7981 agagggtatg gaggaggtgc aggtcgattg ctactatgat ggggcacccg agtataggat
     8041 cgaggtagta gcgcctgatt acaagtcagc agagaaagct tacgaagacg ccagagaggc
     8101 agtttcatct cacattaaga aggcaggcgg ccactttgaa cttcatcgag agtaaggctt
     8161 gtttgacttc tctttccgga tgcttcttga acccggtcgc tagcactagg gggtataggt
     8221 gattcagcaa tggctcgaag tcgactccag aagtgccaat cttgtggtca atacggctta
     8281 ggaaaggaat gtaatgaatg cggaggacct atgcttgccg ctgctcccat caagttctct
     8341 cctgaggata agcagggtga acgtcgtaga gagaggaaac aagttggtaa gggtgaatgg
     8401 tcttctgttc tacctaccct tgatcctcga ggtgaagagg aatgaatcgc tccatcacac
     8461 attggtgcgg tgattcagat gaaatacctc aagagatggt tattctcctt gcactccctg
     8521 gggtggggaa tgttggcaaa gttctagctg atgccattat cgaagaacac caaagtgatc
     8581 taatcgcttg gattatgcat cctgatttgc ctccacatgc aaccttagtt gatgggttac
     8641 tgcg
//
LOCUS       DUKB01000056            3041 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_108846, whole genome shotgun sequence.
ACCESSION   DUKB01000056 DUKB01000000
VERSION     DUKB01000056.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_108846"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            7..1164
                     /locus_tag="HA345_02025"
     CDS             7..1164
                     /locus_tag="HA345_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011032544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase family protein"
                     /protein_id="HIH84167.1"
                     /translation="MIEQSEIKTILEDYDQLKLRIGMTASHSALDICDGAIEEGFPTV
                     AYCQKGRERIYSEYFRTQRSSSGRVRRGMVDKTVVLDRFDGIIDPEFQQGMRDRNMIF
                     IPNRAFTSYCGIDRIENDFRVPMFGTRSMLRMEERTEEFDYYWLLEKAGLPYPEAIED
                     PQDIDCLVIVKLHHAQKKLERGFFTCASYEEYVEKSSDLLAQGVIDEESLKTARIERY
                     VIGPVFNLNFFYSPLEEEMPQLELLGVDWRFESSLDGHVRLPAPQQMTMPAHQQIPEM
                     TVVGHNTATIRESLLEGAFELGEKFVKASKEHYDPGVIGPFCLQTCIDKDMNFHIYDV
                     APRVGGGTNVHVNVGHPYGNSLWRRPMSTGRRIALELRRAAEQDRLLEVLT"
     gene            complement(1157..2125)
                     /locus_tag="HA345_02030"
     CDS             complement(1157..2125)
                     /locus_tag="HA345_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84168.1"
                     /translation="MEELITGILRHRGARLDPTPDLLGTASIRPLGRISEPPIGLRNG
                     PARLHTMIWHAPDGWTVLDRVELDRWIIDAPLGDHWLISERPLAKSLIPPERDGLQTE
                     IWGPEELASWIGEAVLSGEIKTSLGFQDVENKSVPQEVEEIRLESAWFNTLHTEVATF
                     QPIIDLEVWLERNPLKGVRPTAVLVEGRVWSVQGILRGPDDSTERSWWSVLEVPQFGS
                     FRIIEDPVFLNHRPRLRILPSPGWMEEAIVRQNIERVTETRRPYSPREDVTVRIQGRW
                     KLDPSSAEIEFGMILIPAWVLESPSAGTDLLDATTGNLHPLPSGIR"
     gene            complement(2178..2477)
                     /locus_tag="HA345_02035"
     CDS             complement(2178..2477)
                     /locus_tag="HA345_02035"
                     /inference="COORDINATES: protein motif:HMM:NF002172.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30e"
                     /protein_id="HIH84169.1"
                     /translation="MDLARQLKNAISSGTLLFGQRQTMSACNSSDARMVILAANCPMG
                     YVEDLLSRHPDVPMHQVALVNRELGAACGKPFAVSALTVVDAGDSDLLTLRPNVE"
     gene            complement(2527..>3041)
                     /locus_tag="HA345_02040"
     CDS             complement(2527..>3041)
                     /locus_tag="HA345_02040"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010879382.1"
                     /note="DNA-dependent RNA polymerase catalyzes the
                     transcription of DNA into RNA using the four
                     ribonucleoside triphosphates as substrates; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A''"
                     /protein_id="HIH84170.1"
                     /translation="IKLKGVKDIIRANIQGATKDTGEYYISTIGSNLSKVSEFQGVDR
                     SRTYTNNIMEIVKYLGIEAARQSIINEMSMTLEGAGLDVDVRHLLTVADVMTSEGEVR
                     AIGRHGVSGNKHSILARAAFEVTVNHLLNAGVRGERDDLTGVAENIIVGQPVALGTGS
                     VELFYVPNEE"
BASE COUNT          793 a          791 c          729 g          728 t
ORIGIN      
        1 gattccatga ttgaacaatc cgagatcaag accatactcg aggattatga ccaactcaaa
       61 ctccgaattg ggatgactgc aagtcacagc gctcttgata tctgcgatgg agcaatcgaa
      121 gagggatttc ccactgttgc ttactgccaa aaaggaaggg agcgaatata ctctgaatac
      181 ttccgtaccc aacgaagtag ttcaggacgt gttcgacgcg gcatggtgga taagaccgta
      241 gtgcttgatc gcttcgatgg gataatcgac cctgaattcc aacaagggat gcgagatagg
      301 aacatgattt tcatcccaaa ccgcgcattc acatcatact gcggaatcga ccgtatcgag
      361 aatgacttcc gtgtaccaat gtttggaaca cgatcgatgc ttcgtatgga agagcggaca
      421 gaagagttcg attactactg gctgcttgag aaggcaggcc tcccttaccc tgaagcaatt
      481 gaagatcccc aagatatcga ttgcctcgtt atcgtgaaac tacaccatgc gcagaagaaa
      541 ctcgaacgtg gattcttcac ctgtgcatct tacgaagaat atgtagagaa gtcaagcgat
      601 ctacttgcac agggtgttat cgatgaagag agcctcaaga cagctagaat cgaacgatat
      661 gtcattgggc ctgttttcaa tctgaacttc ttctatagtc ctctggaaga ggagatgcca
      721 caacttgagt tacttggcgt cgactggcgc tttgagagta gtctcgatgg acatgtacga
      781 ctcccagcac ctcaacaaat gacaatgcct gcccaccaac aaattcctga gatgacagta
      841 gtagggcaca acaccgcaac aattcgtgaa tcccttcttg agggtgcatt cgaactaggt
      901 gagaagtttg tcaaagctag caaggaacac tatgaccctg gtgtgatagg cccattctgc
      961 ctccagacct gcatcgacaa agacatgaat ttccacatct acgatgtcgc tccacgagta
     1021 ggcggaggga ccaatgtcca cgtcaatgtg ggccacccct acgggaattc actctggcgc
     1081 cgcccgatga gtaccgggag acgtatcgca ttggaactgc gccgagcagc agaacaagac
     1141 cggctgcttg aagtcctcac ctgattccag acggaagagg gtggagattc cccgttgtag
     1201 catcaagtaa atcggttcct gctgaggggg actcaaggac ccacgccgga atcaagatca
     1261 ttccgaactc aatctcagcc gaagatggat cgagtttcca tctgccttga attcgaacag
     1321 ttacatcctc cctcggggaa taagggcgac gagtttccgt cacccgctcg atgttctgcc
     1381 ggactatggc ttcctccatc caccctggag atggaaggat tcgcaagcgt gggcggtggt
     1441 tcaggaatac tggatcctca ataatcctga atgaaccaaa ctgtggaact tcgaggacac
     1501 tccaccatga acgttcagtg gaatcatctg gaccacggag gatgccttga acactccaca
     1561 cacgaccctc caccaaaacg gcagtcggcc gcactccttt cagtggattc ctttcaagcc
     1621 agacctcaag atcgattatt ggctggaatg tggcaacctc tgtatgtagt gtgttaaacc
     1681 aagcagattc aaggcgaatc tcctcgactt cttgtgggac tgatttgttt tcgacatctt
     1741 ggaaaccaag tgaggtcttg atttcaccag atagaactgc ttcaccgatc caagaggcta
     1801 attcttcagg accccaaatc tctgtttgta atccatctcg ctcaggtggg atgaggctct
     1861 tcgccaaggg ccgctccgag atgagccagt gatcccctaa tggtgcgtcg ataatccaac
     1921 gatctagttc gacccgatct aagacagtcc aaccatcagg agcatgccaa atcattgtgt
     1981 gtagacgggc tggaccattt cgcaatccaa ttggtggttc tgaaattctt cccaatggac
     2041 gaattgaagc tgtaccaaga aggtcaggtg tagggtctaa tcgagcgcca cgatgtcgaa
     2101 ggatacccgt gataagttcc tccatcggaa gccgtcagtg gcttgaggac catcaagcga
     2161 ttggttattg ggggttatca ctcgacattc ggacgaagtg ttagcaaatc cgaatcacca
     2221 gcgtcaacga cggttagggc gctaacagcg aacggtttcc cgcaagccgc accgagttca
     2281 cgatttacca acgcaacctg atgcatcggc acatcagggt ggcgactaag caaatcctcg
     2341 acgtatccca tagggcagtt cgctgcgagg attaccattc gagcgtcgct cgagttgcat
     2401 gcactcattg tctgtctctg accgaacagg agggtcccgc tcgaaatcgc attcttcagt
     2461 tgtcttgcta aatccatcta attcatctcc attctctgcc ttttggcttc tcatggtgcg
     2521 cgatattcac tcctcattag ggacgtagaa cagttccaca cttcccgtac caagagctac
     2581 tggctggccg acaatgatat tctcggctac acctgtcaaa tcatcgcgct ctccgcgaac
     2641 acctgcatta agcaggtgat taacggtgac ttcgaaagca gctcgtgcaa ggatactgtg
     2701 cttgtttcca gacacaccgt gtcgtccaat cgcacggacc tctccttcag atgtcatcac
     2761 atcggcaact gtgaggagat ggcgaacgtc gacatctaga ccggcacctt cgagagtcat
     2821 agacatctca ttgataatcg attgacgcgc agcctcaatt ccaaggtact tcacaatctc
     2881 catgatattg tttgtataag ttcgagagcg atcgacgcct tggaactcgc tgaccttgga
     2941 aagattactt ccaatcgtcg agatgtagta ctctccagta tccttagttg caccctgaat
     3001 gttcgcccga atgatgtcct tgacaccctt gagcttaatc t
//
LOCUS       DUKB01000057            3894 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_114687, whole genome shotgun sequence.
ACCESSION   DUKB01000057 DUKB01000000
VERSION     DUKB01000057.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3894)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3894)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_114687"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="HA345_02045"
     CDS             <1..262
                     /locus_tag="HA345_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013580973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HIH84171.1"
                     /translation="EERLITILNDLVLESVNRFGVLAVAIAHRIGRVGVGEPIVSIHV
                     GSAHRKEAFEACSWLIDSLKKQAPLWKKEIREDGTHWKEGLG"
     gene            259..720
                     /locus_tag="HA345_02050"
     CDS             259..720
                     /locus_tag="HA345_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020200002.1"
                     /note="MoaC; along with MoaA is involved in conversion of
                     a guanosine derivative into molybdopterin precursor Z;
                     involved in molybdenum cofactor biosynthesis; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HIH84172.1"
                     /translation="MTEKGIDGIIPVGHKPIIERYAQAEGRLRLGSKSIAAIHQGLVS
                     KGDVFEASTVAAIQAAKETPRAIPHCHPIPLESCRVEWDWEESDLICRVSVSAHWKTG
                     VEMEALCAVTTGLLCALDMVKSFEKDDDGQYPSTRIHGVRVLEKRKSDGEV"
     gene            745..1698
                     /gene="glpX"
                     /locus_tag="HA345_02055"
     CDS             745..1698
                     /gene="glpX"
                     /locus_tag="HA345_02055"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013121736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HIH84173.1"
                     /translation="MKRTADLAESFLRATEAAAIAAADWRGRGEGKIADGAAVEAMRA
                     VFDTVPFDGRVAIGEGERDDAPMLWIGEPLGNRQGDSDALSIDIAVDPLECTNHCAKD
                     SPNAIAVLAAAPRGTLLHAPDCYMDKIAGPAELAGKISLEADVAYNIEAASQALDKPV
                     RDLLTVVMDRPRHENLIRELRDLDVKVRLIGDGDVSAALDAANPDSEVDMLIGIGAAP
                     EGVITATALRGLGAHFEGQLVFKNDGHRERAEDMIDGDIERIWQRDDLCTSDDAIFVA
                     SGVCTGYLPGVEFLPGRTAVHSEIIDVLQGTRRFVSNDYPR"
     gene            1747..2760
                     /locus_tag="HA345_02060"
     CDS             1747..2760
                     /locus_tag="HA345_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012111023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase class I"
                     /protein_id="HIH84174.1"
                     /translation="MDTALLESTANFLVGPGRGILAADESNGTMTKRLEAVGVESSSE
                     TRREYRANLFAMPTMAKAISGVILYDETIRQNAVDGTSIPDYLHARDIMPGIKVDTGA
                     KPLACNDGETVTEGLDGLRDRCMEYFQMGARFAKWRAVIRIDDGMPSDACISTNAHAL
                     ARYAAICQEQGLVPIIEPEVLMEGNHDAQRCFDITATVLDATWEACAVQGVHLPGALL
                     KPNMILPGKAHAVRSDVDTCARMTIDLLHNHVPHEIPGVVFLSGGQTEVEATAHLNAM
                     NNMGPHPFQLSYSYGRALQSSALKTWAENRDDVGQAHEVFAHRCEMAHLARSGSWSTG
                     LEV"
     gene            2767..3546
                     /gene="xth"
                     /locus_tag="HA345_02065"
     CDS             2767..3546
                     /gene="xth"
                     /locus_tag="HA345_02065"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HIH84175.1"
                     /translation="MRIVSWNLNGIRAAIRKGLDLFIHELDADIWLFQEVRALPEQLP
                     KDWIPPSDMQVEWHPAEKKGYSGVATWGRGVFTTIGKGMGCGDDPGDLEGRILVTQHN
                     GIRCINTYLPSGSSKIERQLYKEKWMNDWAEWLESELVSEEPVIVAGDLNIAHEEIDI
                     WNARGNMMSSGFLPQEREWFSSLLGNGWHDLCREHWGPVQGPYSWWSNRGRAREDNKG
                     WRIDYILGNDAAKARFKDARIVRAGGLQVSDHAPVVVDFDI"
     gene            complement(3547..>3894)
                     /locus_tag="HA345_02070"
     CDS             complement(3547..>3894)
                     /locus_tag="HA345_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84176.1"
                     /translation="DEENWETKLGQILDGTKNGSWRAAAESMDELTKELNARTAAIED
                     ATELLEFLLDEWKDLRNRLQKTGIGPDDSERLECEAAVASVKEAYEVADVPRCLDALG
                     DADGRMERLRRRV"
BASE COUNT          910 a          901 c         1069 g         1014 t
ORIGIN      
        1 ggaagagcgc cttattacga ttctgaatga tcttgtccta gagtcagtga atcgtttcgg
       61 tgtactcgcg gttgctatag cgcatcgcat cggtcgtgtc ggagtaggtg aaccgattgt
      121 gtcgattcat gtcggttctg cacatcgtaa ggaagccttt gaggcctgtt catggcttat
      181 cgattccctc aagaaacagg cccctttgtg gaagaaggag attcgagagg atgggacgca
      241 ttggaaggag ggattgggat gactgagaag ggtattgatg gcataattcc tgtagggcac
      301 aagcccatta tcgagcgtta tgctcaggct gagggccggc tacgtctcgg ttcgaaaagt
      361 atcgcggcta tccatcaagg acttgtgtcg aagggagatg tattcgaagc gagtaccgta
      421 gctgccattc aagcggctaa agagacccca cgtgcgattc ctcattgcca tcccattccg
      481 ctggagagtt gccgagttga gtgggattgg gaagaatccg acctgatatg tcgagttagt
      541 gtgtctgccc attggaagac cggcgtagag atggaggcac tttgtgctgt gactaccggg
      601 ttactctgcg cactcgatat ggtgaagtcc ttcgagaagg atgatgatgg tcagtatcca
      661 tctactcgaa tccatggagt tcgagttctg gagaagcgta aatccgatgg tgaggtttag
      721 acacctaatc ctctacgagc caccatgaag cgcaccgccg atctggctga gtccttcctg
      781 agagcaactg aagccgctgc cattgctgca gctgattggc gtggccgagg agaggggaaa
      841 atagcagatg gtgccgcggt agaagctatg cgtgcggtat tcgacacagt tcctttcgac
      901 ggtcgtgttg caattggtga aggggagcgt gatgatgcac ccatgctttg gattggggaa
      961 ccactcggca accgacaggg ggactctgat gcgctgagta tcgatattgc agttgatcct
     1021 cttgagtgta ctaaccattg tgctaaggat tcacctaacg caatcgcagt ccttgcagcc
     1081 gctcctcgcg gaactctact ccatgcacct gactgctaca tggacaagat tgccggtcct
     1141 gctgaacttg cgggaaagat ttctcttgaa gctgatgtgg cttacaacat tgaagcggct
     1201 tcgcaggcgc tagacaagcc ggttcgtgat cttttgacag tagtcatgga tcgtcctcgt
     1261 catgagaatc tcattcgtga gcttcgagat ttggatgtaa aggtccgttt gattggcgat
     1321 ggtgatgtgt ctgcggctct cgatgctgcg aatccagatt ccgaggttga catgctgatt
     1381 ggtattggtg ccgccccgga aggcgtcatt accgctacag cattacgtgg tttaggggct
     1441 cattttgagg ggcaacttgt gttcaagaat gatggtcatc gagaacgtgc ggaggatatg
     1501 atagatggcg atatcgagcg tatatggcag cgggatgatc tttgcacatc tgatgatgca
     1561 atcttcgttg cgagtggtgt atgcaccggt tatcttcctg gtgtagagtt tctacccggg
     1621 cgtactgccg ttcatagcga gattatcgat gtcctgcaag gaactcgcag attcgtgagc
     1681 aatgattacc ctcgttgaga atactctgtg cgaactcttc aaggactgtt agagggtgct
     1741 ttggccatgg acacagcgct tcttgaatca acagcgaact tcctcgtcgg acccggacga
     1801 ggcatcctcg cggcagatga atccaatggc accatgacga agagactcga agcagttggg
     1861 gtggaatctt catcggaaac acggcgagag taccgtgcta atttgttcgc tatgccaacg
     1921 atggcgaaag caatcagtgg tgtgattctc tacgatgaaa ccatccgcca gaatgcggtt
     1981 gacggcacct caatccctga ttatctacat gctcgcgaca tcatgccggg catcaaagtg
     2041 gatactggag ccaagccact cgcttgtaat gatggtgaga ctgttacaga gggtctcgat
     2101 ggtttacggg atcgctgtat ggagtatttc cagatgggtg cccgattcgc caagtggaga
     2161 gctgtaatcc gcattgatga tggcatgcct tcagatgctt gtatatccac taacgctcat
     2221 gctctcgcac gttatgctgc catctgtcaa gaacaagggc tcgtcccaat tatcgaaccc
     2281 gaggtcttga tggagggaaa tcatgatgct caacgatgct tcgatatcac cgcgactgtc
     2341 cttgatgcta catgggaagc ttgcgcggtt cagggtgttc atcttcctgg tgcacttctg
     2401 aagcctaaca tgattcttcc aggtaaggca catgccgtcc gtagcgatgt ggatacatgt
     2461 gctaggatga caatcgatct tctccacaac catgtccctc acgaaatccc tggtgttgtt
     2521 ttcctgtctg gcggacaaac cgaggtcgaa gctacagcac atctcaacgc gatgaacaac
     2581 atgggacctc atccgttcca attgtcttac tcttatggtc gggcactcca atcatcagcc
     2641 ctgaaaacat gggcggagaa tcgcgacgat gtaggccaag ctcacgaagt gtttgctcat
     2701 cgatgcgaga tggctcatct tgcccgttca ggctcctggt ctacaggtct agaggtatga
     2761 gcattcatgc gcatcgtctc ttggaatctt aatggaatcc gtgcagcaat ccggaaggga
     2821 ttggatcttt tcattcatga attagatgca gatatttggc ttttccaaga ggttcgtgct
     2881 cttcctgagc aactccccaa ggattggata cctccctctg atatgcaggt ggaatggcat
     2941 cctgcggaga aaaaaggcta ctcaggtgtt gcgacttggg gccggggagt attcacaacc
     3001 attggaaaag gcatggggtg tggagatgat ccaggggatt tggaaggtcg tatacttgtt
     3061 acgcagcata atgggattag atgcataaac acgtatctac caagcggttc atcgaaaatc
     3121 gaacgacagt tatacaagga gaaatggatg aatgattggg ctgaatggtt agaatctgaa
     3181 cttgtcagcg aggagcctgt aatcgtcgcg ggtgacttga atatcgctca tgaggaaatc
     3241 gatatttgga acgctcgcgg gaatatgatg tcatcaggct tccttcctca agaacgggaa
     3301 tggttcagta gtcttcttgg aaatggttgg catgatctct gccgtgaaca ttggggtcca
     3361 gtccaaggcc cctattcttg gtggtcaaac cggggacgag cacgggaaga caacaagggt
     3421 tggcgcatcg actacatact aggaaacgat gctgcgaagg cacgattcaa ggatgcacgc
     3481 attgtgaggg caggaggcct ccaggtatct gaccatgcgc ctgtagttgt tgactttgat
     3541 atctaatcag actcgtcgcc gtaacctttc catccgtcca tctgcgtcac ctagtgcgtc
     3601 gagacatcta gggacatcgg ctacttcgta ggcctccttc acactagcga ctgcggcttc
     3661 acattccaat cgttctgaat catcagggcc aattcctgtc ttctgtagac gattcctgag
     3721 atctttccat tcatcgagta ggaattcaag gagttctgta gcatcttcta tcgcggcggt
     3781 acgcgcattg agttcctttg ttaattcatc catagactct gcagcagccc tccaagaccc
     3841 attttttgta ccatcaagga tttgccctaa ttttgtttcc caattttctt catc
//
LOCUS       DUKB01000058            9992 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_4464, whole genome shotgun sequence.
ACCESSION   DUKB01000058 DUKB01000000
VERSION     DUKB01000058.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9992)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9992)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9992
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_4464"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..952)
                     /locus_tag="HA345_02075"
     CDS             complement(<1..952)
                     /locus_tag="HA345_02075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84177.1"
                     /translation="MKNPFDSLTHWSIDKPKTAVAAFIALILGLSMFVAGPIPESLGV
                     GIEFDNSEDAFFPARESNEDVDLLYTIEETYTSSIDIVRLMVEFDPGALENDTTWMML
                     ADLEAEMLEHSNSSKHRLDTGIGSVLGPASAAYGWSMMVDPENVTWLDAIEDTMFASY
                     AANTSTFSEELTAYQEALDLTPMQPVSIEADALREWSPEPGWLERMDQGQNRLVTLGK
                     LQSWAGNLRSVAVQVDLWDNASIQQQISDIENASWNISMFHIAMQNSIPYKELILSNM
                     PTKEANGDDFVLIPEDDRWSRIDVVTISMFIDNEPGAWGEV"
     gene            complement(1035..2075)
                     /locus_tag="HA345_02080"
     CDS             complement(1035..2075)
                     /locus_tag="HA345_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004039208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HIH84178.1"
                     /translation="MEEAAEIILTDEVHVEPQVPVLEAHNLYHIYGSNQEDGNVVALR
                     GLSVSISEGEVVAVVGPSGSGKSTLLKAFGGLMKPSAGSVFLNGRNMTRITGQELVRL
                     RQDTVSFIFQEGNLLPDLNALDNVAQPLRHAGVRAREARRRAMEMLESLGIEDRARSL
                     PATLSGGEAQRVAIGRALITDPKIILADEPTGALDPISGRRIIDLFRQLNEERGVAFL
                     IVTHSKEISTFANRALELRDGRFIAQHGNDVDDGDLASTRELLIDDTGTMSLPPDVLA
                     TLGGPGRFDINDLSRDGISMERVLSERIAVEGNVEMLLAPACPACGYIYGESTEEECP
                     SCGSSRPMVVSS"
     gene            complement(2101..5751)
                     /locus_tag="HA345_02085"
     CDS             complement(2101..5751)
                     /locus_tag="HA345_02085"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013003.1,HMM:NF014717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HIH84179.1"
                     /translation="MVSKTRTQRITDFIADLPSNVRTSVESAWRGRERGLAIVAGVFL
                     ASLVITTVLAYGNGLSQTFLQTTLEGDVFDAKVEQQASPPVPGVSSENSTFTNDSALM
                     VEVCEELSLRSEIADCSFVFGRQAIRTEGNFNNIEAFTAGYLAMESVTSENPVLENET
                     FDFPEADANGPPLFTKRMVRLLGPGAFDGALADRHDAQMLNDIPWPSHQDMIDNRSVI
                     LPASLAGPLGVQVNDTIDSLQFSYVIENVAGAESIDDRDCEGYVERTRGGVEHCRLYA
                     VVENLNVSGIYEDWAFANPTFGFNPIFMAWSMLDNGTVTTLMDSDHGYLGVAVDRSLV
                     PTSSTADAEDWISILRQSVMYEDGPGNNQKSYGAGIELFWFDTISGSILFIEIFLGLI
                     QTFDYILMIPIIILSVAILVYGLILSLEQRRREIAIHRTIGGSASQLQSMVLREVFAM
                     SFVAWLLGYILAIQTVGLVLSAVGFMSFEPLEFPINVQLGTISLLVTAFATIGAALLF
                     GRGRTKEFLELEIDEGVRKVPTKKKQRTGLQILMFSIGILAVVESRIEDTTGDRGLIE
                     NFFIDGLLGLFGPFLLWIGGALILGRIAAFGPRFFSILFGWTPLLKDIRRGLKGGGSS
                     ESIGRLATIMVLTLSIVTLAAVQGATGTLVDDRTAESQTGSVMSVQFDEPKNQTQVNA
                     IFESNINNLGIDVDPIRSTAVNSLTVTTVDGSISSEAWVVLDGHEDVLLWTQQSIPGD
                     DISQVVTGWSEGGFTAGAEIAFSLRLPGAGDGGDDGFEPKFDDDSGEVEVVRFISNSQ
                     RLNISTPNLEEFTSVEALAPIFAEYNWKSNLSHLDLSGQDMSDRELQRTNFTSSILIG
                     TDLSDSNLRKSVFFYTSLVGANLSGADLTDSILITPDFGFGNPLEGANLSGADMTGMF
                     GMANLSGVDITDAICPDGTFANVTGCVTGLSPIPPSQVMEILQADIEISIEQSEYTTE
                     LNYLGQHQYLPGQSSADAEGTIIIGESAYRALSGLESNATINATEWYVWIGKGSMLLA
                     DINEDDLTSLRFSIEANDSVTGVSDLSSNRELVERNGGLIFGTPGLLSLQFVVAALGS
                     VASAFVFLSLVLSQRKREMAILQAIGASPNQVMRLVLFEILAIVISSMALGLVLGAGV
                     AQSFNGFFSIFGFIFQIFGGASTVIDRELVWPWFDLAIVSVAVLSAVLVALTTTTFRA
                     LRSDLAVVLKGE"
     gene            complement(5754..6488)
                     /locus_tag="HA345_02090"
     CDS             complement(5754..6488)
                     /locus_tag="HA345_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006797279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84180.1"
                     /translation="MGCMLKVNDLRKGFGFGRRRIEVLKGIDLEIKQGELVALMGPSG
                     CGKSTLLNIIGGLLAGDSGSVELNEFTYGTRQPSGNVKIRRHGVGWIFQDFHLVDHLT
                     ALDNVALALGLSGLSDTEANNRALKALERVGLGDRVDHIPDQLSGGQRQRVAIARAVA
                     GSRPLLLADEPTGNLDSRSGEEILQLFHDLCHDSEDPISILMVTHDPNLASKADRMLL
                     LREGKTAASDIRSAWGDAVADDLEEE"
     gene            complement(6571..7704)
                     /locus_tag="HA345_02095"
     CDS             complement(6571..7704)
                     /locus_tag="HA345_02095"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024968.1,HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH84181.1"
                     /translation="MDKSVLVVRGGALPIESGLGRAHNAVTERLRTGLVTGWSLAGEI
                     EHPLNDGQGAVKRLRKRWSIHPRLVASEIANRTPSIVHITDQEQAHLVPENAGCPVVV
                     TIHDLFHLDPQVIDTEWGPIQIGQKPGFVRRMDIRRLIEGLRRADAALCISEATAAHV
                     KRFLPELRTFVVPNSVDLSSRDPRSGRRPSPNLESDSMHLLVVGSEDRRKALDFALEI
                     IGALDVSVRRDILLHKVGAESSSLAEQRLKKKATDRGVRMRWHGRVEEEDLIALEQNV
                     EALLFPSAAEGFGLPVVEAMASGCPVLVNDLGAQNEHPPERSILPAFNRDVWCTAIED
                     MHRLWINRDVPIRPIDEEMIRSAEKRGPSEIGVIQASVYDQIL"
     gene            7785..9017
                     /locus_tag="HA345_02100"
     CDS             7785..9017
                     /locus_tag="HA345_02100"
                     /inference="COORDINATES: protein motif:HMM:NF012744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH84182.1"
                     /translation="MSEDSQGPPLLVIKGSFAQYGGAERDVVRQLEAWSHVFEEVRIA
                     TLHSHPELEAETERLGIPLFTPTDTWTEGSSAIDRITAGSSRAASKAWRKFLTSGGDT
                     GTLTNALNGITAVHLVSGAGSLEVVGALPNEIGVHVHMLEPNRGLHGETVLWARIDGS
                     QPRPATLTRFLLTIPRRRDKRIVKQLASRTQCRFSGNSPYIQSRIKEVFDIEAGVFLP
                     CVDTNLWTTDKEANVTDSDYVVTIGRASWVKGIWECIDMLANSKLKLVLVGGGDPSDL
                     EKLSRHAETNQVELEIAPRLGHSELVELMVSARAIISLAHGEPFGLTPVEAHAVGTPA
                     LMVDEGGFRTTVEDGLSGRLLPRGDKNAWMQAFEEAADPENRSKWGIAGRKKIKELGL
                     DSNSRARDLQSIIQGQKT"
     gene            complement(9020..9445)
                     /locus_tag="HA345_02105"
     CDS             complement(9020..9445)
                     /locus_tag="HA345_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84183.1"
                     /translation="MEEDVGSSIGLSTIMKLTGTLPILLGIAFLLTPRTAIAVGPHLT
                     EYGIFVSMYVGVFAIFLGLSQWLVSIYVKENLHIFGRFFAFGLGSTVLLEIYGWTTGL
                     MEFEFKFLFATMIPVSATLVLLLYSITPEQLETDTNNEN"
     gene            complement(9509..>9992)
                     /locus_tag="HA345_02110"
     CDS             complement(9509..>9992)
                     /locus_tag="HA345_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84184.1"
                     /translation="TLDSDSDGVGDNADVFPHNPNETVDSDYDGVGDNADAFPDDSTE
                     TLDSDGDGRGDIEQAASEAAMQKNITIAVLVLVLSGITIGVVLFMRGKNEASLVSEIS
                     KERDLQSTVVATVPEAAPPIQTTAPTVTNQWTDEAGNTWRSMSDGSTLWWNGDDWQQV
                     "
BASE COUNT         2791 a         2525 c         2303 g         2373 t
ORIGIN      
        1 cgacttcacc ccatgcacct ggctcattat cgatgaacat cgatatcgta accacatcaa
       61 ttctagacca acgatcgtcc tctggaatca agacaaaatc atcaccattt gcttccttag
      121 taggcatgtt tgaaagaatc aattccttgt atggaattga attttgcatt gcaatatgaa
      181 acatggaaat attccaagac gcattctcaa tatccgaaat ctgttgctga attgaggcat
      241 tatcccataa gtccacttga accgctacac tcctcaaatt acctgcccag gactgtaatt
      301 ttcccaacgt aactaatcgg ttctgtcctt gatccatgcg ttcaagccaa ccaggctccg
      361 gagaccattc ccttagcgca tcagcttcaa tgcttacagg ttgcattggg gttagatcca
      421 atgcttcttg gtaagcggta agctcctcgg agaatgtaga ggtgttggct gcgtatgatg
      481 caaacatcgt atcttcaatt gcatccaacc aagttacatt ttcagggtcc accatcattg
      541 accaaccata cgctgcagaa gctggtccta ggactgagcc aataccagtg tccaatctat
      601 gtttagatga attactatgt tcaagcatct cggcttcaag atctgcaagc atcatccacg
      661 tggtatcatt ctccagcgca ccggggtcaa attcaaccat gagacgaacg atatcaatcg
      721 aggaagtata ggtctcttcg atagtatata ggagatcgac atcttcattt gattctctgg
      781 cagggaaaaa cgcatcctcc gagttatcaa attcaatacc aactccaaga gattctggaa
      841 ttgggccggc aacgaacatc gataatccca gaatgagagc gataaaagcc gctaccgctg
      901 tctttggttt atcgatgctc caatgagtca gagagtcgaa ggggttcttc acaaacaatc
      961 aaccatttac atcagcatat caaggaatgg ctggtatagt ggccattatc acatatctga
     1021 gagtagatac tagattagga agatactacc attggccggg aagagccaca agatggacat
     1081 tcttcttcgg tggattctcc gtaaatgtaa ccgcatgcag gacatgcagg agcgagcagc
     1141 atctcgacat ttccttcaac ggcaatccgc tcagagagca cacgttccat cgatatacca
     1201 tcacgactga gatcgttgat atcgaagcgc ccagggccac ccagagtagc aagaacatcc
     1261 ggtggaaggg acattgttcc agtgtcgtca atcaagagtt cacgagtaga tgcaagatcg
     1321 ccatcgtcga catcgttccc atgctgagct atgaagcgcc catcacggag ttcaagcgcg
     1381 cggttcgcaa aggtggatat ttccttgcta tgagttacga ttaggaaagc aacaccacgc
     1441 tcttcgttga gctggcgaaa caagtcgatg atgcgccgtc cggaaattgg atcgagagca
     1501 ccggtcggtt cgtctgcaag gataatcttc ggatcagtaa ttagtgcacg accaatggcg
     1561 acacgctgtg cttctccacc agaaagagtc gcaggaaggg aacgcgcacg atcctctatg
     1621 ccaagtgatt ccaacatctc catcgctcgc cttcgagcct cgcgtgcacg gacaccagca
     1681 tgacggagtg gttgggccac attgtcaagc gcgttgagat cggggagtag attcccttct
     1741 tggaatatga aagaaacagt atcttgtcgc aatctaacaa gttcttgacc tgtaattcta
     1801 gtcatgttcc ggccattgag gaaaacggaa cctgcacttg gcttcatcaa gccgccgaat
     1861 gccttgagaa gagtcgactt accactacca gaaggaccca ctacagctac aacctctcct
     1921 tcactgattg atactgaaag gccacgcaat gcaacaacat tgccatcttc ttggtttgac
     1981 ccatagatat ggtacagatt gtgcgcttcc agtacaggaa cttggggctc aacatggacc
     2041 tcatctgtga ggataatctc ggctgcttcc tccatatgct cacgctcctt taccatgccc
     2101 tcactccccc tttaggacca cggcaaggtc cgaacgtaac gctctgaaag ttgttgtagt
     2161 cagtgcgaca agaaccgcag atagaacagc aacactgact atcgcaagat caaaccatgg
     2221 ccatacgagt tctcggtcaa tcacagtaga tgcaccgccg aatatctgga atatgaaacc
     2281 aaagatcgaa aagaatccgt taaaggattg cgcgacaccg gcaccgagta caagaccaag
     2341 cgccatacta gagatgacta tcgcaaggat ttcgaataag acaagacgca tgacctgatt
     2401 cggactagca ccaatcgcct gaaggattgc catctcacgc ttacgttgag agagtacgag
     2461 agaaaggaat acgaaagctg aagcaacaga acctagagcc gccacaacga actgaaggct
     2521 aagtaggcct ggcgttccga atatgagacc accattacgt tcaactaatt cacgatttga
     2581 ggaaagatca gagacaccag ttacggaatc gttagcctcg atcgaaaaac gcaaagaggt
     2641 caaatcatct tcattgatat ctgcaagtaa catggaacct ttaccaatcc agacatacca
     2701 ttcagttgca ttgattgtag cattagattc caatcctgaa agtgcccgat aagcagattc
     2761 tccgatgatg atggtacctt ccgcatccgc cgatgattga cctggaagat actgatgctg
     2821 accgagatag ttcagttcag tggtatattc tgactgctct atggatatct cgatatcagc
     2881 ctgaagtatt tccattacct gagacggtgg tattggcgac aatccagtga cacatcccgt
     2941 tacgtttgca aaggttccat caggacatat tgcatcggtg atgtcaaccc cagagaggtt
     3001 tgccatacca aacatcccag tcatgtcggc tccactcaag ttggcacctt caagcgggtt
     3061 gccaaatccg aaatcgggag tgataagaat ggaatccgtc aaatcggctc cactcaagtt
     3121 agcgcctacc agtgacgtgt agaagaatac cgactttcga agatttgagt cactgagatc
     3181 agttcctatg agaattgagg aagtaaaatt tgttcgctgg agttctctat cagacatatc
     3241 ttgtccacta agatccaaat gactcagatt agatttccag ttgtattctg cgaagattgg
     3301 ggctagtgct tcaaccgatg taaattcctc aagattgggt gtggagatat tcagtcgctg
     3361 actattcgaa atgaatctaa caacctctac ctctccggaa tcatcgtcga attttggttc
     3421 aaatccatca tctccgccat cgcctgcacc cggaagacgt agactaaatg caatctctgc
     3481 tcctgcagta aaacccccct cagaccaacc agtaacaacc tgactgatat catcacccgg
     3541 aatggactgt tgagtccaaa ggagaacatc ctcatggcca tctagaacta cccatgcttc
     3601 cgaagaaatt gaaccgtcaa ctgtcgttac agtcaagcta ttcacggcag tagatcgtat
     3661 gggatcaaca tcaatcccaa gattgttgat attactttca aaaattgcat tgacctgtgt
     3721 ctggttcttg ggttcgtcaa actgtacact catcacagaa cccgtctgag attctgcagt
     3781 tcgatcatcc acaagagtgc ccgtcgcacc ttgaacagca gcaagcgtaa cgatggatag
     3841 agttagtacc ataatggtcg ctagacgacc gattgactca cttgaaccac cgcccttcaa
     3901 tccgcgacgg atatccttca gaagcggcgt ccatccgaac aagatcgaaa agaagcgtgg
     3961 cccaaatgca gcaattcgcc caaggatgag tgccccgcct atccaaagga ggaaaggtcc
     4021 gaagagtccc agtaatccgt cgataaagaa gttctcaatt agaccgcggt caccggttgt
     4081 gtcctcaatc cttgactcga caacggctag gataccgata ctgaacatca agatctgtaa
     4141 acctgtacgc tgcttcttct tggttggaac tttacgaaca ccttcatcga tttcaagttc
     4201 aaggaattct ttcgtccgtc cacgtccaaa caatagagct gcgccaatag ttgcaaaagc
     4261 agttaccagg agagatattg ttccaagttg gacattgatt gggaactcca atggctcaaa
     4321 cgacatgaag ccaactgcgg aaaggacgag ccctacagtc tggatcgcaa ggatgtatcc
     4381 aagtaaccaa gcaacaaaac tcatcgcgaa gacctcgcgc agtaccatac tctgtagttg
     4441 agatgctgaa cctccaatgg tcctatggat ggcgatttca cgtcgcctct gctctaacga
     4501 taggattagc ccatagacga ggatagcaac agacaaaatg atgatgggaa tcataaggat
     4561 gtaatcgaag gtctgaatca atcctaggaa gatttcaatg aagagaatcg aacctgagat
     4621 tgtgtcgaac cagaaaagct cgattccagc gccgtaagat ttctggttat ttcccggacc
     4681 atcctcatac atcaccgact ggcgtagaat actaatccaa tcctcggcat ctgctgtcga
     4741 agacgtgggt actagcgaac ggtcaactgc aaccccaaga tagccgtgat cagaatccat
     4801 gagagtggtc acagtcccat tatctagcat ggaccaagcc atgaagatcg gattgaatcc
     4861 gaaggtagga ttagcaaatg cccaatcttc gtaaattcca ctcacattga gattttccac
     4921 aacagcatat agccgacagt gctcaactcc accacgggtt cgttcaacat atccttcgca
     4981 atcacgatca tcgatagatt ccgcaccggc tacattctca atgacatagg aaaactgtag
     5041 ggaatcaatc gtatcgttta cttgaacacc gagggggcct gcgagactag cagggagtat
     5101 gacactgcgg ttgtcaatca tatcctgatg gctcggccat ggtatatcgt tcaacatctg
     5161 agcatcatgg cgatcggcta gagccccgtc gaaagcccct gggccaagaa gacgcaccat
     5221 tcgcttggtg aagaggggag ggccatttgc gtccgcttcc gggaagtcga aagtctcgtt
     5281 ttctagtact ggattttctg atgtaactga ttccatagcg agataacctg cagtaaacgc
     5341 ctcgatattg ttgaaattcc cttcagtacg aatcgcctgt ctcccaaata cgaaactaca
     5401 gtcagcgatt tccgatctca gggagagttc ctcgcatacc tcaaccatca gagcgctatc
     5461 gttagtgaaa gtagagttct cagatgaaac tccaggtact ggaggggatg cctgttgttc
     5521 caccttcgca tcgaagacat cgccctcaag tgttgtttgg aggaaggttt gggaaagacc
     5581 gtttccgtac gctagaactg tggtaataac aagtgaggcg aggaatacgc ctgctacgat
     5641 ggcgaggcca cgctcacgac cacgccaagc agattcgacg gaggttcgta cgtttgaagg
     5701 taaatccgcg atgaagtcgg tgattcgctg ggtacgtgtc ttggagacca tattcactcc
     5761 tcctccaaat catcggcaac agcgtcgccc caagcagagc gaatatcaga ggcagcagtc
     5821 ttaccttcac ggagcaacaa catccggtcc gccttagatg caagattcgg atcatgtgta
     5881 accataagaa tggatattgg atcctcggaa tcgtgacata aatcatggaa aagttgcaga
     5941 atctcctctc cggatcggga gtcgaggttt ccggtaggtt cgtcggcaag caagagggga
     6001 cgacttccgg caactgcgcg agcgatggcg actcgttggc gttgcccacc ggaaagctgg
     6061 tccgggatat gatccaccct atcgcctaaa ccaacacgtt ccagtgcctt cagcgcgcga
     6121 ttgttcgcct cggtatcact cagacccgag aggccgagag caagggcaac attgtcaagg
     6181 gcggtaagat ggtccacaag atggaaatcc tggaatatcc aaccaactcc atgacgtcgg
     6241 attttgacgt tacccgacgg ctgacgtgtc ccataggtga actcattcag ttccacgctc
     6301 cctgagtcgc cagccagaag tccgccgatg atgttcaaca atgttgactt cccacatcca
     6361 gaaggaccca tcaaagcgac gagttctcct tgcttaatct caaggtcaat tcccttgagt
     6421 acctcaattc gacgtcttcc aaagccgaaa cccttccgga ggtcattgac tttcaacata
     6481 caccccatcc ctccagtaaa acgacccatg ggtcgagtaa gtattcagaa accgcagttt
     6541 gactggatat aatcgtatgt tctgtgacaa tcagagtatc tggtcataaa cagaagcctg
     6601 gattacacca atttcagatg gtcccctctt ctcagcacta cgaatcatct cttcatcaat
     6661 cggccgtatc ggcacatctc tgttgatcca taatctatgc atatcctcga tagccgtgca
     6721 ccaaacatcg cgattgaaag ctggaagaat acttcgctcc ggagggtgtt cattctgtgc
     6781 acccaaatcg ttcacaagga ctgggcaacc ggaggccata gcttcgacaa cagggagacc
     6841 gaagccttct gcagccgacg gaaagaggag tgcctcgacg ttctgctcca aagcgatcag
     6901 gtcttcttcc tcgacccgcc catgccaccg catacgaact ccccgatcag ttgccttctt
     6961 tttcaatcgc tgctccgcga gcgaagatga ctccgctcca accttgtgta acaggatatc
     7021 gcgacgaaca gagacatcga gagcaccgat aatctccaat gcgaagtcaa gagccttgcg
     7081 tcgatcttca cttccgacca cgagaagatg catagaatcc gactctaggt taggggaagg
     7141 acgacggcca gagcgaggat cacgtgaact aaggtcgacg ctgttaggga caacaaaggt
     7201 gcgaagttct ggaaggaatc gcttaacgtg agcagccgtg gcctcgctga tacacaaagc
     7261 ggcatctgct cttcgaagcc cttcaatcaa tcgacggatg tccatcctgc gaacgaatcc
     7321 tggtttctga ccaatctgaa ttggacccca ctctgtatcg attacctgag ggtcgagatg
     7381 gaaaaggtcg tgaatagtga caaccacggg gcatcctgca ttttctggaa caagatgcgc
     7441 ttgttcctga tctgtgatgt gaacaatact tggagttcta ttggctattt ctgaggccac
     7501 caggcgaggg tgaattgacc atctcttacg aaggcgcttt acagcaccct ggccatcatt
     7561 gagaggatgt tcgatttcac ctgcaagtga ccaccccgtg actaggcctg tgcgaagtct
     7621 ttctgtgacg gcattatggg cccgtcctaa tccagattct attgggagcg cgcccccacg
     7681 aaccaccaga acggacttgt ccatactgga tggagggcga atcttcgctt caaccctgac
     7741 gctctgtcgc caccttgatg ccgaatgatg gagaacatcg aactatgagc gaagattcgc
     7801 aggggccacc cttgctcgtc atcaaaggat cattcgcaca gtatggtgga gccgaacgtg
     7861 atgtcgtgag gcaacttgag gcatggtcac atgtcttcga ggaggtccgt atcgcgacac
     7921 tgcactcaca tcctgaactt gaagccgaga cggaacgatt gggcatccca ctattcacac
     7981 ctacagatac atggacagaa ggcagttctg ccatcgatcg gatcacagca ggttcgagcc
     8041 gggcagcatc caaggcatgg cgtaaattcc tgacaagtgg tggggatacc ggcaccctga
     8101 ccaatgctct gaacggtatc acggctgttc atctcgtctc cggtgcgggc tcactagagg
     8161 ttgtaggtgc attaccaaat gagattggag tccatgtcca tatgctcgaa ccgaaccgtg
     8221 ggttacatgg agaaactgtg ctttgggcac gaatcgatgg tagtcaaccc agacctgcaa
     8281 cattgactcg tttcctactg actatccctc gtcgccgaga taagcgaatc gtcaaacaac
     8341 ttgcaagtag gactcaatgc cgatttagcg gaaactctcc ctatattcag tcacgcatca
     8401 aggaagtatt cgatatcgaa gcgggcgtat tcctaccatg cgtagatacc aatctctgga
     8461 ccacagataa ggaggccaat gtaacagatt cagactatgt ggttaccatc ggccgagcaa
     8521 gttgggtcaa aggaatatgg gaatgtatcg acatgttagc caattcaaaa ttgaagcttg
     8581 ttcttgttgg aggaggcgac ccctctgatc ttgagaagct cagtagacat gctgaaacaa
     8641 atcaagtcga attagaaatc gcaccacgac tcggtcattc cgaactagta gaattgatgg
     8701 tttccgctcg tgccatcatt tcacttgcac atggcgaacc cttcggcctc actccagttg
     8761 aagcccatgc ggtaggcaca cctgccctga tggtagacga aggtggattc aggacaactg
     8821 tggaggatgg attatctggt cgcctattgc cgcgcggcga caaaaatgca tggatgcaag
     8881 cctttgagga agcagcagat ccagaaaatc ggtctaaatg ggggattgcc gggagaaaga
     8941 aaatcaaaga actcggatta gattccaata gtagagcaag agatttacaa tcaatcattc
     9001 aaggacaaaa aacctgaact taattctcgt tattggtatc agtttccaat tgttctggag
     9061 taattgaata tagcaataaa acaagagtag cagaaacagg aatcattgta gcgaataaga
     9121 acttgaattc aaattccatg aggccggttg tccaaccata aatctccaat aatacggttg
     9181 atccaagacc gaatgcaaag aaacgtccga aaatgtgtag gttttccttg acataaatcg
     9241 atacgagcca ttgtgacaag ccaagaaaaa ttgcaaacac tcccacatac atactcacaa
     9301 aaataccata ctcagtaaga tgggggccaa ctgctatagc agttcttggc gttaaaagaa
     9361 aggctattcc gagcaatatt ggtagggtgc cagtcagctt cattattgta gaaaggccaa
     9421 ttgatgaacc tacatcctct tccatgattc caagaggatt cgataagcat gaaaactttg
     9481 ttgaaattga gattctgagt tctgaatttc atacctgttg ccaatcatca ccattccacc
     9541 aaagggtact accgtcagac atactacgcc aggtgttgcc cgcctcatct gtccattgat
     9601 tcgtaacggt tggagcagtt gtttgaattg ggggcgctgc ctctggcaca gtagctacca
     9661 ctgtagattg caaatctcgc tccttgctta tctctgaaac aagagaggcc tcattcttac
     9721 cacgcatgaa gagaacaaca ccaatcgtaa ttcctgaaag aacaaggacc aacactgcta
     9781 ttgtgatgtt cttctgcatc gcagcctctg atgcagcctg ttcgatgtct ccacgtccat
     9841 ctccgtccga atcgagtgtt tcagtcgagt catctgggaa ggcatccgcg ttgtcaccta
     9901 caccgtcata gtcactatct acggtttcgt tcgggttgtg tgggaacacg tcagcgttgt
     9961 cacccacgcc atctgaatca ctatccaagg tc
//
LOCUS       DUKB01000059           16913 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_142198, whole genome shotgun sequence.
ACCESSION   DUKB01000059 DUKB01000000
VERSION     DUKB01000059.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 16913)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 16913)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16913
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_142198"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(39..674)
                     /locus_tag="HA345_02115"
     CDS             complement(39..674)
                     /locus_tag="HA345_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84185.1"
                     /translation="MKRKNALHRRSLLASLIVLVMLSPGCLSLVTSREMMEGMRAEYE
                     VYNRQSTEGWAYTFDTQNTQSAQYTNQTDVPIDSTVSEFEILFDATFPWSDTVNDTFP
                     GVQDLVDVRYAEASLWRPGEYPSGTPFWTERTTSNYEQTRFRYVNEASSPFEAGDWQL
                     TIDAQGIGIETPVDILDVYDSFTVYVTVTRPCVHFEEVHEDGECTDLILLE"
     gene            complement(783..3464)
                     /locus_tag="HA345_02120"
     CDS             complement(783..3464)
                     /locus_tag="HA345_02120"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84186.1"
                     /translation="MRPALIVAMLLFSPVLGMVVASSVGDISVDEADIQIIGDLENGA
                     SVTVEVTIHNSGAVTASVWWELSQDSSKIHEGSFISVAAGDTATTQTVTDLTAAGSMT
                     ITVDFSSGGIAASQSKMFSVADRPNLIIGSLLVDPPGPYYPGDMFSANVRVDNIGGAS
                     AAANSISFAIGEASPSEYPVAPLSAGQSVWVNRTMSAPTADSELTVVVNSNQNDGVLE
                     SQIDDNEQTTQLVIQSPPNFFHDDSGVLVDTSSSALTGPWTLSGTILRQGGSGSASVP
                     LQFKRANDGPLVHTISVEFADGQSSSAWTATLDDTMFLETEGEIMLDAIIDDSGTLQE
                     ISTFDNTEGFSIILYPEPNVVVSSLAVASPQQAKDGDPVTFTVSVQNVGSLTVIGEMS
                     ATLDGEALTPVGRSIPAPSATESGSISIEFSGVARGDITREIPFTATWIANSNSYDSS
                     TEDNTATGSVQLVSDLKIRFLSDESWSVDPPLRPNEPAVYSVTVTAQEGSGIETFVCR
                     DQSTGEDLGTTVVNLPQVGNNDIVSCEVTPTQVGELQLAIIALNGTVPSKTSVWTVAA
                     LTDVQIDPNEANRTLGFTLIIVMGVLGILVLVGAVILTRRVIENTERETFDLCPACGG
                     EIEGDEEACPYCDFELRKGFEKFHDCGNCSSPVPSSMDNCPYCGAGQEVSDHYEQRER
                     RTIPVLDDEPEEEEEDEDEIVLGTSDFGDQIQAFGVSEDAVEDDWEEGLESAQAQIRD
                     IEEEYERITSVIEDEEMGAEIVETALQAQQLESSRDLDSFLSDKGKRRALKDEDVELS
                     ASDANIRQDLYDLTGEQGVMPGEEVVYDELSDPSSQVGKEIDTDRVSDFSSLSGEAGH
                     TEGLVDDSQVQESEDKPKRRRSLRRKDKSGESEESQD"
     gene            3558..5345
                     /locus_tag="HA345_02125"
     CDS             3558..5345
                     /locus_tag="HA345_02125"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84187.1"
                     /translation="MQRITPSVFLVALMLLSIGTTCVGATDARSGQLDFVDPPEVGEV
                     IGGSQSIQVVNIDGLDSVLVEIEENGAWSEVDNLTTTPWSTNWDTTGHNDGDYRLRIT
                     GHQTDGSADVVVTTGIFVIDNTAPLSLTFTVDDATVGDGSSTSNRAWFDIEANSVMIF
                     RWSASDDNLEKAIVTSAPGTGNPPSDGPGTLLNRWSWAPGDLDEGTHDVILTVHDEAG
                     NTAVRTLYIGIDRSGPSIGTPAFSVPTETWTDQSFVTVGGVSSGATDSGGSGIDHYEW
                     RAGDGEWSNFGSGAITTLPLTEGQVTMSFRAIDRLGNTGSTTDHVFWTDRTDAVSGGW
                     SVPEITSRTMVDVTVSLLATDSHSGIDVGNTTLRYGFDRDGAGSIPDITNRWLDLGTG
                     MNATLSSGAPSGIDWSTKEGDWLALSAVMVDVAGNQVMSPPTYVRIVPGIDFTLEDVN
                     VDRLIVAANTGDQINVTGTVVSNQVHTGSLIVRLEMAPSDRTSDTNWTTLETRTLEAG
                     DLYQMRAELDPFNVQLLAAGEYDLRLVVDPDDTIPEKDEGNNEEYLMVSGARPRTIEA
                     VSGFMPALILVVLAAGWMAWTMRPSKDEE"
     gene            complement(5347..6078)
                     /locus_tag="HA345_02130"
     CDS             complement(5347..6078)
                     /locus_tag="HA345_02130"
                     /inference="COORDINATES: protein motif:HMM:TIGR03665.1"
                     /note="similar to yeast Dim2p protein that is essential
                     for 40S ribosomal subunit; structural studies show binding
                     to 3' end of 16S rRNA in complex with archaeal IF2 alpha;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-processing protein"
                     /protein_id="HIH84188.1"
                     /translation="MELLARIAKDRIGVLIGKGGDTKQAIEEEARCKLHIDSDSGEIS
                     ADWDDDSDPIIRLKMPDLIRAIGRGMSPQRAIQLLDDDVHLRMYDIRDWVGRQPNQIK
                     RMRGRVIGRDGRIRELVEELSGVEIVVYRSTILVVGDIESLAVGSAAVERLLGGSEHG
                     TVLKFLEKEKRRQKIERQTLPMHSERQVTGSTRFDDLVPGLAAARERRNQRRFKGIQV
                     DPEDETAISEMMGLAEDEHVRYEEE"
     gene            complement(6123..6986)
                     /locus_tag="HA345_02135"
     CDS             complement(6123..6986)
                     /locus_tag="HA345_02135"
                     /inference="COORDINATES: protein motif:HMM:NF013341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protein kinase RIO"
                     /protein_id="HIH84189.1"
                     /translation="MDDTDSFEDEVEEIDTKEMHGEGGYATEWMEQPKMKRMFQEIEH
                     RLDGVLGKGQYEWVDRRVFDQVFDRSTLLAIYKLMRQGEVDTIEFPIASGKEAHVFYA
                     TSPNGPRAVKIFHTTNAVFKSLTKYIEGDPRFGGLSRRHRELVTIWVRKEHRNLKRLE
                     NCGLQVPAAYGVYRNVLVMEYLGTPQGPSPRIRDIQLENPESVFNELVDFMRVSWNVA
                     EIVHADLSEYNVLWHDSEPWIIDVGQAVKTAHPNAQEFLIRDVRNVCRWANRLGVDAP
                     FEETLLRVLED"
     gene            complement(6996..7592)
                     /gene="eif1A"
                     /locus_tag="HA345_02140"
     CDS             complement(6996..7592)
                     /gene="eif1A"
                     /locus_tag="HA345_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HIH84190.1"
                     /translation="MESGEGTSRIRVPLPKRKVNEMFAIADQMLGGRRVRAICEDGEV
                     RIARIPGKMRRRQWVREEDLIVVQPWEYQDDRANVITRYSKTQAMYLSRKGQLPSIVD
                     VFGTKDDPVDMGDDSGIFASGDDDDGGLFGDDDDDSLFDSEDSDDVDDTSLSDDDSDE
                     EEVPDEEPEQPSSPEPSKTIDNSDIDDDDDMDIDSFFG"
     gene            complement(7694..9487)
                     /locus_tag="HA345_02145"
     CDS             complement(7694..9487)
                     /locus_tag="HA345_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HIH84191.1"
                     /translation="MNIESPLLASPLLGEVLRPEMTILIGIVLLIVVPNLGNATIRIP
                     MTKFRVPVFLGGQRFTMTSDPLIPGVISMFVLLLSMAASLMTFVDGHELVNVCISASG
                     AIQQGCLGSDYILRSDPYSRLFTTIFFFALLLGTAAMINRMPAFVDAKAPHPDDTGAT
                     RIHAIRRLLNNRRQGDFHLLILFVALGMSIVALSTHLFLLFIGLELASLAIYVLVAFM
                     KEDETSGEAATKYFLTGSVASAITLYGMSLLYIWSGSASNYATASLSLVGPNGLAATW
                     QAMDSVDPLAAIGFGMVLVGFGFKISAVPFHFAAPDAYSGTSAPIALILATASKAMGF
                     AALIRILIVMAMPEYGTEATWLILVGLLSVVTMTWGNLAALSTENPKRMLAYSSVAHA
                     GYLLAALAALGSGMAGAATSRLLVTAVVFHLLVLSFFKSGAFLVLTLTEMKGDDANKM
                     ESLYGLGRRDPIMAAAMFVFMLALAGVPPLSGFLSKFLVIDGIVTASTASGSLSAGGA
                     IEWLSSVHWVFWLAVAMAVNSALSLFYYLRIGQVMFFETPRSIRPLPEAPMIRIAVIL
                     CLFLTVLAGLGPFSQTLVDMATMAAQELLRV"
     gene            complement(9484..11091)
                     /locus_tag="HA345_02150"
     CDS             complement(9484..11091)
                     /locus_tag="HA345_02150"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HIH84192.1"
                     /translation="MNSLEILTLTPLVAGLMLLFLHEIVPNHTREKATELIRYANLGI
                     AIILFLLATQIGFETDWIDTWAAGNFGGQNAYVLESTPVSLISSIGVTWHIGIDALSF
                     PMVWLTTLLIPLSMLVQWDAEKGAQFHSLILIMEGALLGVFVVLDLFLFYAFWELTLV
                     PMFFLILVWGGADRRYAAMKFFIYTFSASILMLIGILIVYFHSAPAGDFTGTLTGHHF
                     DMVSLMQQSSLIDSAGLRMVVFLLLLVGFATKMPSVPVHTWLPDAHVQAPTAGSMLLA
                     GVMLKMGAYGFLRIAVSFFPQETVTMIPLLVFLGMASLFYGAWVCLGQTNLKRMVAYS
                     SVSHMGLIFLGIATMQPLGIAGALFMMFAHGLISPLLFAVCGSFKHHYHTLEIGSMRG
                     LAHHSPFMAGHMMLGWMASLGLPLLAGFVAEVAIMIAFWMTFGWWVLIPALTLILTAG
                     YYLWSMQRTIFEGSDPHRGILPDTMHGEEPRDITWHENVGMFILGALAILFGILPAIF
                     FDMMSNWSSGLVSEVLIDALTQLEVTP"
     gene            complement(11088..13721)
                     /locus_tag="HA345_02155"
     CDS             complement(11088..13721)
                     /locus_tag="HA345_02155"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012581.1,HMM:NF012868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84193.1"
                     /translation="MGETQNESRLLVFLLPALLIPLGLAFGSGDGSTEWSFLIIAAPM
                     IAFPIILIVGQVWNGHKFWKNTLKEGGIPALMTMTVTLGIGIWVLVDHLCGSAQLSED
                     TAVNLLSWISFDVLAHTEAGWMLVPGFEDITFGVWVDQVTLMLLFVATFLTFLICWFA
                     IGYMTTDEINENRNHRFFAEYLLFTAGMFGMVLADNFLWLFIFWEIMGLCSYLLIGFY
                     YWKPSAASAAKKAFMTTRVGDVFLMVGLLILYRIYGSLNFGVVFDDPSTGVNGLPVDV
                     ELLGWALVMLFIGAVGKSAQFPLHVWLPDAMEGPTPVSALIHAATMVNAGLYLVARMV
                     PFFDVAHGGLAGLENIGILIAWVGGITAFMAAGIAFVQNDIKKVLAYSTMSQLAYIFT
                     GLGAALWFLNQEGDAMHTAGVIVLGSSLFHLFNHAMAKGMLFMASGSVIHEVHHAHDH
                     LHHDTHDHDDEDLSEVPKALVALVKHLRSEGMTLREFFSDLDVDDSRTLDLDELRSGL
                     MGIGIVEEESAVDAMIAAMDRNDDGQIDPIELDSYMMDFLIGGRVESHGGHEEFDPQD
                     MRNMGGLAAHLPVTSTAMMLGSMSIIGIPLIGGFWSKEGIVGYTWKAFFENEPLMLGP
                     ALLVLMTAGMTGFYMTRMWMMTFAGAPKSDVVDHVHETTPWIKTPLVTLSIVTAFTGL
                     LLTMFGVVKYLGGKYDELNLYDSHSYDPSVIDAFVYALEHAFLPSDPNMMAVGYTTIV
                     LAFLLGPWFAMRVHGGSLKEGAEAFPLVGWLVSLSGRPSRMDVSRMSSSSLARALENR
                     LYIDDLYDEIIRRTVIPFSCLSAWFDKRVIDGIVKSVELGSQGASQRIRLLTTGSARD
                     YILYATVGALSITFILMGASL"
     gene            complement(13732..14034)
                     /gene="nuoK"
                     /locus_tag="HA345_02160"
     CDS             complement(13732..14034)
                     /gene="nuoK"
                     /locus_tag="HA345_02160"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019176175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HIH84194.1"
                     /translation="MIDPGYIAGLSTILFFIGLAGAFTRKHAIIVLMCIEIMLNAVNL
                     NFVAVSMQTGNVEGWVFISIAIAIAAAEVAVGLAIFLSLYSTRETINLDEVDLLKH"
     gene            complement(14031..15068)
                     /locus_tag="HA345_02165"
     CDS             complement(14031..15068)
                     /locus_tag="HA345_02165"
                     /inference="COORDINATES: protein motif:HMM:NF024600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84195.1"
                     /translation="MMRALGNSARAGIIVLGLYLMGLLVDASRWDAPMLEMSSPTARF
                     ADVLMVDWSLALVVLGALLSMAMIGASYLVRDERLENLVWNESTIEVASAPSKRSLPP
                     KAMDKVSGNELAMLANFLAEKGQTVFQFFRSIDLDDSGEIDTMEFQLALSKAEIANLP
                     PWDIDVLVSQMDLNGDGKLDLPELDIALLSCQIPRSKEEADAEVAEDEAEAEAQSKQV
                     EKEVAERQDRMDKELEERRKRLENLDEKARKKEEELIRVAEKAKTIDFGTLGVASASE
                     ADDLQKIKGIGPFIAEKLNALGIYKFSQLANMTSEIEEEVNVAIEFFSGRVKRDEWAK
                     QARNITGGEEE"
     gene            complement(15065..15334)
                     /locus_tag="HA345_02170"
     CDS             complement(15065..15334)
                     /locus_tag="HA345_02170"
                     /inference="COORDINATES: protein motif:HMM:NF012709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84196.1"
                     /translation="MAIDGELITFGIFSFIAILGALGCVYANRVAHSMLSLTFCFFAV
                     AGVFVLAGAELLSAIQILVYLGSVMLVVQFGVMLTRRQIMGDDFE"
     gene            complement(15337..16335)
                     /locus_tag="HA345_02175"
     CDS             complement(15337..16335)
                     /locus_tag="HA345_02175"
                     /inference="COORDINATES: protein motif:HMM:NF024247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HIH84197.1"
                     /translation="MAYHPRATPNFRNLVVRPMWITLRAALRTIPVIGPKFFSSGYHG
                     KEAKMLDEMTANRIKDGDRESRFYAADRETSHFVKSPSRPVTVMYPYERLEDLEPWLF
                     VPNNYNGRIGVVWETCTACKACVRACPNDCLHMESEVRVNVLDMPDASDENLGLSTVE
                     FMEGGYLAQKREDFEDIENTFSLETAHESAPQQYDFAEIIDLSGNTASVRWQDTGKIE
                     SVDLEGMIPAEQDIVSGRIDLGRCMFCGLCMESCPFNSFFMTNEYDGMSGMTRNDLWM
                     DASRTRVLPVVHKEAVDRELAKRADKERSKRERAAKKASKTKQQAGDKPENAEAEA"
     gene            complement(16338..>16913)
                     /locus_tag="HA345_02180"
     CDS             complement(16338..>16913)
                     /locus_tag="HA345_02180"
                     /inference="COORDINATES: protein motif:HMM:NF012373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HIH84198.1"
                     /translation="FDMPEAEAELVEGWWTEYGGMRWGLLFASEYLRALAACLLFSLF
                     FLGGWEFPFEDSLITVPIIGGIFEFIFQIIPHSIWLLMKAWLVFGFFIWVRASLHRVR
                     TDQILEFGWRYLLPLSVIQLGLSMWLRLGVYDGGSWPLIVPALITIISIVLFVVLVMD
                     EDEDALAEQRRPYHVSEINKASPGARMNMED"
BASE COUNT         4610 a         4388 c         3927 g         3988 t
ORIGIN      
        1 tcattgttca cgccgtgacg aatgtccaga ccggcttatc actcaaggag aataagatct
       61 gtgcactcac cgtcctcgtg tacctcttcg aagtggacac agggtcgagt gacagtgaca
      121 tacactgtga atgaatcgta gacatctaag atatccacgg gagtttcgat tccgatgccc
      181 tgggcatcga tagtgagttg ccagtccccg gcctcaaagg gtgatgaggc ctcattcacg
      241 tatctgaaac gagtctgctc gtaattggaa gttgttcgtt ctgtccaaaa cggagttcca
      301 gaggggtact cacctggcct ccacaatgat gcttcagcat agcgaacatc tacgaggtct
      361 tgcacaccag ggaaggtgtc attcacagta tccgaccaag ggaatgtggc atcgaagaga
      421 atctcgaact cactcacagt ggaatctatt gggacatctg tctggtttgt atattgggca
      481 gactgcgtat tctgggtatc gaaggtatat gcccaacctt cggttgattg acgattgtac
      541 acctcatact cggctctcat tccttccatc atctcgcgac ttgtgaccaa gctcaaacat
      601 cctggactaa gcatcactag aacaatcaga gacgcgagga gagagcggcg gtgtagagcg
      661 ttttttcgct tcatctcgtc ccctcggtat tcgcctgtct gcactcatag ggttcgtcaa
      721 cgctacgctc tgacccactc tgtcatcact caggcaagtc gacgaagaac ggcgcccccc
      781 attcaatcct gcgattcttc tgattcgccg gacttatcct ttcttcgtaa gctcctgcgt
      841 cgctttggct tgtcctcaga ttcctgcact tgagaatcat caacgaggcc ttcagtgtgg
      901 cccgcttcac cagatagaga agagaaatcg cttacacggt cagtatcaat ctccttaccg
      961 acctgagatg atggatctga aagttcgtcg tagacgacct cctcaccagg catgacacct
     1021 tgttctccag tcaaatcata cagatcctga cgaatattcg catcgcttgc actcaactca
     1081 acatcctcat ccttgagtgc acggcgcttt cctttatcgg agaggaatga gtccaaatcg
     1141 cggctggatt caagttgttg ggcctgaagt gcggtttcga caatttctgc acccatctct
     1201 tcatcctcaa ttacagaggt gatacgctcg tattcctctt cgatatcgcg aatctgggcc
     1261 tgagcgctct ccaggccttc ttcccaatca tcttcaactg catcctcgga tacgccgaag
     1321 gcttgaattt ggtcaccaaa gtcactagtg ccgagaacaa tctcgtcctc atcttcttct
     1381 tcttcctccg gctcatcatc aagaacaggg attgtacgtc gttctcgctg ctcatagtga
     1441 tcactaacct cctgacctgc cccacagtag ggacagttgt ccatggaaga aggtactgga
     1501 ctgctacaat taccgcaatc gtggaacttc tcgaatcctt tacggagctc gaaatcacag
     1561 tatggacaag cctcctcatc accttcaatt tcaccaccac aggctggaca aagatcgaag
     1621 gtttcacgct cagtattctc gattacacga cgagttagaa tcacggctcc aacgagcaca
     1681 aggataccaa gtacccccat gacgatgatt agtgtgaatc caagtgttcg gtttgcttcg
     1741 tttggatcaa tctgcacatc agttagtgct gcgactgtcc agacagaggt ctttgatgga
     1801 actgttccat tcagagcaat gattgcgagt tgtagttcgc ctacctgcgt tggtgtgact
     1861 tcacaactca caatgtcatt attaccaact tgaggaagat tcaccacagt tgttccaaga
     1921 tcttctccag ttgactgatc cctgcaaacg aaggtctcga tacctgaccc ctcttgggca
     1981 gtaactgtga cagaatatac ggctggttca tttggacgca aaggaggatc tacgctccaa
     2041 ctttcatcag aaaggaatcg aatcttgagg tcactcacta attgtacgga acccgtggca
     2101 gtgttatcct ctgtggatga atcatagctg ttactgtttg caatccaagt tgcagtgaaa
     2161 ggaatctctc gggtaatatc cccacgggca actccactga actcaatact gatgcttccg
     2221 gattctgtcg cagatggcgc aggtattgat cgacctactg gagtgagggc ttccccgtct
     2281 agggttgctg acatctcacc aattactgtg agtgaaccaa cgttttggac acttacagta
     2341 aaggtgactg ggtcaccatc cttcgcttgc tgaggagagg ctacagctaa ggaagaaact
     2401 acgacattgg gttcaggata gaggattatt gagaaaccct ccgtattgtc aaaggtacta
     2461 atttcctgaa gtgtaccaga gtcatcgatg attgcatcga gcatgatctc cccctccgtc
     2521 tcgaggaaca tagtgtcatc caatgtagcg gtccaagctg aggacgattg accatcggcg
     2581 aactcaacag agatcgtgtg gacgagtggt ccatcgttgg cacgcttgaa ctgcaaaggt
     2641 acactagcgg aacccgaacc accctgacgg agtattgttc ccgaaagcgt ccatggtcca
     2701 gtaagagcgc tgctagaagt atctacaagc actccggaat catcatggaa gaaattagga
     2761 ggactctgta tgacgagttg agttgtttgc tcgttatcat cgatttggga ctctagcact
     2821 ccatcgttct gattgctgtt taccacgacc gttagttcag aatccgcagt tggagcactc
     2881 atagtacggt taacccatac tgattgacca gcagatagag gcgccacagg atattcactg
     2941 gggctcgcct caccaatggc gaacgagata ctatttgcag cggcggaagc acctccaata
     3001 ttgtctacac ggacatttgc actaaacata tcaccgggat aatatgggcc aggtgggtcg
     3061 actagaagag aaccgattat caaattcggc cgatctgcaa cgctgaacat ctttgactga
     3121 ctcgcagcaa taccgcctga cgagaaatca accgtgatgg tcatcgatcc tgcggcagtc
     3181 aaatctgtca ctgtctgagt cgtagctgta tcacctgcag caaccgaaat gaaggaacct
     3241 tcgtgaatct ttgaagagtc ctggctaagc tcccaccaga cagatgccgt tacagccccc
     3301 gaattatgaa ttgtaacttc aacggtaacg gatgccccat tctcaagatc acctataatc
     3361 tggatatccg cctcatctac cgaaatatct cctactgatg atgctaccac catacctagc
     3421 accggactga agaggagcat ggcgacgatg agagcgggtc tcatgctgta cgatggggca
     3481 tcggggcact tcaacgctcc cgctgcgttc agcgtgaaag gattgaaggg cgtgcgcttg
     3541 cacatctgga gcattccatg cagcgtatca ccccgtccgt gttcctcgta gccctaatgc
     3601 ttctgagcat tggtacgacc tgtgtagggg ccactgatgc tagaagcgga caattggact
     3661 tcgttgatcc tcccgaggtg ggcgaggtaa tcggaggtag ccaatcgatc caagtcgtca
     3721 atattgacgg attagattcc gtgcttgtag aaatcgaaga aaatggggct tggtctgaag
     3781 ttgacaatct cacaacaact ccttggtcga ccaattggga caccactgga cacaacgatg
     3841 gggactatcg tctccgtatt accggacacc aaaccgacgg cagcgcggat gtggtcgtaa
     3901 caacagggat attcgtaatt gacaatactg ctcccttatc ccttaccttc accgttgatg
     3961 atgcaacagt tggtgacggt tctagcacct caaatcgcgc ttggtttgac atcgaggcga
     4021 atagtgtcat gattttccgg tggtccgcat cagatgacaa tctcgaaaag gcgattgtta
     4081 catcagctcc agggactggg aatccgccct ctgacggacc aggtacgctg ctaaaccgct
     4141 ggtcatgggc tcctggagat cttgacgaag ggacccatga tgtgattctg actgttcatg
     4201 acgaagcagg gaacacagcg gttcgaacct tgtatatcgg tatcgatcga agcggtccga
     4261 gtatcgggac acctgccttc tctgtgccaa ccgaaacttg gacagaccaa tccttcgtta
     4321 cagtaggagg ggtatcctca ggagctactg actcgggagg aagtggaatt gatcattacg
     4381 aatggcgcgc aggtgatgga gaatggtcaa attttggatc gggtgcaatt accacgcttc
     4441 cactaactga aggacaggtt accatgagtt tccgggccat agataggctt ggtaacactg
     4501 gcagtacaac tgaccatgta ttctggactg atcgcaccga tgcggtctca ggtggatggt
     4561 cagtccccga aattacctca aggacgatgg ttgatgtcac cgtttcactt cttgcaacag
     4621 atagtcactc tggcattgat gtgggcaata caacccttcg ctacggcttc gacagagacg
     4681 gagcaggaag tattccagat atcaccaatc gctggcttga tctcggcact gggatgaatg
     4741 cgactctttc ctctggggcg ccttcaggaa tcgactggag cacgaaagaa ggtgattggt
     4801 tagcactctc tgctgtgatg gtcgatgttg caggaaatca ggttatgagc ccaccaacct
     4861 atgtacgcat agtgccggga atcgacttca cccttgagga tgtcaacgtg gatcgcctga
     4921 ttgtcgctgc aaatactggc gatcaaatca atgtcaccgg aacggtcgta tccaatcagg
     4981 tacatactgg atcactcata gtacgacttg agatggctcc tagtgaccga acctcagata
     5041 ccaattggac aactctggaa actcgaactc ttgaagcagg cgacctctat cagatgcgag
     5101 cagaactcga cccattcaat gtccagctac tggctgccgg cgaatatgac ctaaggctcg
     5161 tcgtagatcc ggatgacact attccggaga aagatgaggg aaacaatgag gagtatctca
     5221 tggtgagtgg tgcacggcct agaacaatcg aagctgtatc aggattcatg ccggcattga
     5281 ttttggttgt cctcgccgct ggttggatgg cttggacaat gcgacccagt aaggacgagg
     5341 agtgaatcac tcttcctcgt atcggacatg ctcatcctct gcaagtccca tcatctcaga
     5401 aattgcggtc tcatcctcag gatctacttg gattcctttg aatcgccgct gatttcgacg
     5461 ttcgcgcgct gccgcaagtc caggaactag atcgtcgaat cttgtagaac cggttacttg
     5521 gcgctccgaa tgcatcggca acgtctgacg ttcgattttc tgtctccgct tctccttttc
     5581 aaggaacttc agaacggtgc catgctccga tcctccaaga aggcgttcga ccgcagcaga
     5641 acctaccgct agggattcaa tatcaccaac tacgagaatt gttgaacgat aaacaacaat
     5701 ctcaacacca ctcaactcct ctacgagttc acggatacgc ccatctcgcc caatcacacg
     5761 tcctcgcatg cgcttgatct gattgggctg acggccaacc caatcgcgaa tgtcatacat
     5821 tctcaaatgc acatcgtcat ccagcaactg gatggccctt tgtggcgaca tgccccgtcc
     5881 aatcgcacgt attagatcgg gcatcttcag acgaataatg gggtcgctat catcgtccca
     5941 atccgcagat atttcaccgc tatctgagtc aatatggagt ttgcaacgag cttcctcctc
     6001 gatggcctgc ttagtatcgc cacctttgcc aataaggaca ccaatgcgat ccttggcaat
     6061 ccgcgcaagc agttccattg gacctgcgtc ctccgctggt ccacttgaac ccgatgggtg
     6121 actcagtcct caagaacacg gagtaaggtc tcctcgaaag gcgcatctac accaagacga
     6181 ttggcccagc gacaaacatt tctcacatca cgaatcagga actcttgggc attaggatgc
     6241 gccgtcttca ccgcttggcc aacatcgata atccaaggct cgctatcatg ccacagaaca
     6301 ttatactctg agagatctgc atggacgatc tcggcgacat tccaagatac tcgcatgaaa
     6361 tctacgagtt cattgaacac agattcagga ttttcaagtt ggatatcgcg tattcgaggg
     6421 cttggccctt gaggtgttcc taggtattcc attacgagta catttcgata cacaccatag
     6481 gctgcaggta cctgcaaacc acaattctcc agccgcttaa gattacgatg ttccttgcgt
     6541 acccaaatag tcactagttc acgatggcgg cgacttagtc ccccaaatcg aggatcacct
     6601 tcgatgtatt ttgttaggct cttgaagacc gcattagtag tatggaatat tttcactgca
     6661 cgtggtccat tcggacttgt tgcgtagaat acatgcgcct ctttgccact agcaattggg
     6721 aattcgattg tatcgacttc cccttggcgc atcagtttgt agatggctag aagtgtagac
     6781 ctgtcaaaga cctggtcgaa tactcgacgg tctacccact catactgacc tttgccaagt
     6841 acaccatcga gtcggtgttc aatctcctga aacattcgct tcatcttggg ctgttccatc
     6901 cactctgtgg catacccacc ttcaccatgc atctccttcg tgtcaatctc ctcgacttca
     6961 tcctcgaagg aatccgtgtc gtccaagact tcacctcatc caaagaagga gtcaatgtcc
     7021 atatcatcgt catcatcgat gtcagaatta tcgattgtct tcgatggctc gggagaggag
     7081 ggttgttcag gttcctcatc tggaacctct tcctcatctg aatcatcatc cgatagagat
     7141 gtgtcatcta catcatcgct atcctctgaa tcgaaaaggg aatcatcatc gtcatctcca
     7201 aagaggcccc catcatcatc atcccctgaa gcaaagatac cgctatcatc ccccatatca
     7261 accgggtcat ctttggtacc gaatacatcg acaatggatg ggagttgacc cttacgggaa
     7321 agatacatcg cttgagtctt cgaataacgg gtaatgacgt tcgcgcgatc gtcctgatat
     7381 tcccatggct gcactacaat tagatcctct tcacgaaccc actgtcgacg tcgcatctta
     7441 cctggaatac gggcgatacg cacttcacca tcctcacaaa ttgcacggac tcgtcgacct
     7501 ccaagcatct ggtcagcaat agcgaacatc tcattcacct tgcgtttggg gagaggtact
     7561 cgaatgcggc tggtgccttc tccagactcc atctgggcga ggagttcctc gtccaccttc
     7621 tcttcacgac gacgtcccat ctacctcagg ctgcagccca cccaataaaa acaggcacgg
     7681 tcaggagtgg acttcagaca cgcagtagtt cctgcgccgc catagtcgcc atatcgacaa
     7741 gagtttgact gaatggacca aggcccgcaa gcacggtcaa gaacaaacag aggattacgg
     7801 cgatacgaat cataggagct tcaggaagag gacggattga acgtggtgtt tcgaagaaca
     7861 tgacctgtcc aattcgcaga taatagaata gtgacaaggc actgttgact gccattgcaa
     7921 cagctagcca gaagacccag tgaacactag ataaccactc aatagcaccg cccgcggaaa
     7981 gtgaaccgct cgctgtgcta gctgttacaa taccatcaat cacaaggaac ttggatagga
     8041 atccggatag tggaggaaca cccgcgagag cgagcatgaa cacaaacatg gctgctgcca
     8101 taattggatc acgccgaccg agcccgtaga gggattccat cttgttcgca tcatcgccct
     8161 tcatctcagt gagtgtaaga acgaggaacg ctccggactt gaagaaagac aggactagaa
     8221 gatggaacac cacggctgta actagaaggc gggaggttgc tgcacctgcc atgccagaac
     8281 caagtgcagc caaggcagcg agaagatatc cggcgtgtgc cacacttgag tacgcaagca
     8341 tccgcttggg gttctcagtg gagagtgcag cgagattacc ccaagtcatg gtaaccacag
     8401 agaggagacc cactaagatg agccaagtcg cttcagtccc atactcaggc attgccatca
     8461 cgatgaggat gcggatgagc gcagcgaaac ccatcgcttt agatgcagtc gcaagaatca
     8521 gtgcaatcgg agcggaggtt ccagagtagg catctggtgc ggcgaagtgg aaaggaactg
     8581 cactaatctt gaatccaaat ccaacgagta ccattccaaa accgatggct gccaatggat
     8641 ctaccgaatc catcgcctgc caagtcgctg caaggccatt gggccctact agagaaagtg
     8701 aagcagttgc ataattcgaa gcagagccgc tccaaatgta aagcaaagac ataccataga
     8761 gggtaatcgc gcttgcaact gaacctgtta ggaagtactt tgtagcagcc tcaccactgg
     8821 tctcatcctc cttcatgaac gccactaaga cgtagattgc gagagatgcg agttcgagtc
     8881 cgataaacag caggaagaga tgtgtcgaaa gtgcaacgat gctcataccg agtgcaacaa
     8941 agagaatcag aaggtggaaa tcaccctgac gacgattgtt cagaaggcgg cgaatcgcat
     9001 gaattcgagt tgctccagta tcatctggat gaggtgcttt tgcatcaacg aaagcgggca
     9061 tgcgattgat catcgccgct gttccaagaa gaagtgcgaa gaagaatatc gtcgtaaata
     9121 gccggctata ggggtccgaa cggaggatgt aatctgatcc aagacaaccc tgctgaattg
     9181 ccccactagc tgagatgcat acattgacga gttcatgacc atctacaaat gtcatcaaac
     9241 ttgcagccat actgagcagt aatacgaaca tcgaaatcac accaggaatc aaaggatcac
     9301 tagtcatcgt gaaccgctgc cctccgagga ataccgggac tcggaacttt gtcattggaa
     9361 tacgaattgt ggcattgcct aggttaggaa ccacaatcag gagaactata cctatgagta
     9421 tcgtcatctc aggtcgaagg acttcgccca agagtggact agctaaaagt ggtgattcga
     9481 tattcatggg gtcacctcca gttgggtcag agcatcgatg agtacctcac tcaccagacc
     9541 actgctccaa ttcgacatca tgtcaaagaa gatcgctggc aagataccga agaggattgc
     9601 aagagcgcct agaatgaaca taccgacgtt ctcatgccac gtaatgtctc gcggttcctc
     9661 accatgcatt gtatcaggta ggataccgcg atgagggtca cttccttcga agatggtacg
     9721 ctgcatggac cagagatagt atccagcagt gagaatgagg gttagggctg gtatgagcac
     9781 ccaccagccg aaggtcatcc agaaagcaat cataattgca acctcagcaa cgaatccagc
     9841 aagtaacggt agaccaagac ttgccatcca accgagcatc atgtgtccag ccatgaacgg
     9901 actatggtgg gcaagaccgc gcattgaacc aatttcaagc gtgtgataat ggtgcttgaa
     9961 agaaccacaa acggcgaaaa gaagaggcga gattagacca tgagcgaaca tcatgaacaa
    10021 cgcacccgcg ataccgagcg gttgcattgt tgcaatcccg aggaaaatta gacccatgtg
    10081 cgaaactgaa gagtaagcaa ccattcgctt gagattcgtc tgaccgagac agacccatgc
    10141 gccgtaaaac aggctggcca tcccgaggaa cactagaagt ggaatcatgg taaccgtctc
    10201 ctgagggaag aatgagaccg ctatgcggag aaaaccgtag gcacccatct tcagcatgac
    10261 acctgcaagg agcatcgaac cggccgtagg cgcctggacg tgagcatcag gcaaccaagt
    10321 gtggactggg acgctaggca tcttggttgc gaaaccaacc aacaggagta ggaatacaac
    10381 cattctcaaa cccgctgaat cgattaacga cgattgttgc atcagtgaaa ccatgtcgaa
    10441 atgatggccg gtcagagtgc ctgtgaagtc accagcagga gcactgtgga agtagacaat
    10501 caggatgcca ataagcatca gaatactcgc agagaatgta tagatgaaga atttcattgc
    10561 agcatatcga cgatcagctc caccccaaac aagaatcaag aaaaacattg gaacgagtgt
    10621 aagttcccag aatgcgtaga ataagaataa gtcaaggacg acgaacacac caagcagtgc
    10681 accttccata atcagtatca ggctgtggaa ctgtgcaccc ttttccgcat cccactgcac
    10741 aagcatcgaa agggggatta gcagcgtagt caaccagacc attgggaaag agagtgcatc
    10801 gatacctatg tgccaagtga ctcctatact agaaatcaaa gatacaggcg tgctctcgag
    10861 aacatatgca ttctgacctc caaagttccc tgcagcccat gtgtcaatcc aatctgtctc
    10921 aaacccaatt tgggttgcaa gaaggaagag aatgatagca ataccaagat tcgcgtaacg
    10981 aatcaactca gttgccttct cccgggtatg gttcggaaca atctcgtgaa ggaagaggag
    11041 cataaggccc gcaacgagag gagtcaaggt gagaatctct agcgaattca aaggctcgcc
    11101 cccattagga tgaatgtgat gcttaatgct ccaacggtag catacaagat gtagtcacga
    11161 gcgcttcctg tggtgagtaa tcgaattcgc tgactcgcac cctgggatcc gagttcaaca
    11221 cttttcacaa taccatctat gacacgcttg tcgaaccaag cgctgagaca tgaaaacggt
    11281 atcacagtcc tacgaataat ctcatcgtaa aggtcatcga tgtagagccg attctctaat
    11341 gcccttgcaa gtgaggatga agacattcgg gatacgtcca ttcggctagg ccgtcctgaa
    11401 agactgacca accatccaac gagagggaag gcttctgcac cctctttgag agagccaccg
    11461 tggacgcgca tcgcaaacca aggtccgagc aagaaagcga gcactatcgt tgtgtagcca
    11521 actgccatca tgtttggatc cgaaggtaag aaggcgtgct caagggcgta aacaaatgca
    11581 tcaatcaccg atggatcata actatgggaa tcatacaagt tcaactcatc gtacttgcct
    11641 ccgaggtatt tcactacacc aaacattgtc aaaaggaggc cagtgaaagc cgtcacgatt
    11701 gagagggtta cgagaggagt cttgatccat ggcgtagtct cgtgaacatg atctaccacg
    11761 tcggacttcg gtgcaccagc gaaagtcatc atccacatac gcgtcatgta gaagcctgtc
    11821 atgcctgcag tcatgagaac gagtaatgca ggcccaagca tcagaggttc attctcgaag
    11881 aaggctttcc aggtatatcc aacgatacct tccttcgacc agaaccctcc aatcaatgga
    11941 ataccaataa ttgacattga ccctaacatc atcgccgttg aggtaacggg aagatgagct
    12001 gcaaggccac ccatgtttcg catgtcttgt gggtcgaatt cttcgtgacc gccatgagat
    12061 tcgacgcgcc ctccaatcaa gaaatccatc atataggaat ctagttcgat ggggtcaatc
    12121 tggccatcat cgttgcgatc cattgcagca atcatcgcat caacagcgga ttcttcttcg
    12181 acgattccga tgcccatgag gccagaacgg agttcgtcaa gatcaagagt acggctatcg
    12241 tcaacatcaa gatctgaaaa gaactctcga agagtcatgc cttcgcttct cagatgtttg
    12301 acaagagcaa caagagcctt gggaacttcg ctcaaatctt cgtcgtcgtg gtcatgggtg
    12361 tcgtgatgaa gatgatcatg tgcatgatgg acctcgtgaa tcacggaccc ggatgccatg
    12421 aacagcatac ctttcgccat tgcatgattg aagagatgga aaagggagga tcctagaaca
    12481 atgactccag cagtatgcat cgcatccccc tcctggttaa ggaaccagag agccgcaccc
    12541 aaacccgtga atatgtaggc cagttgactc atagtcgaat acgctagtac ctttttgata
    12601 tcgttctgaa cgaaagcgat acctgccgcc atgaatgcgg taattcctcc cacccatgca
    12661 atcaggatac ctatgttctc aaggcctgcc aggccgccat gagcaacatc aaagaatgga
    12721 accattcgtg cgacgagata gagtcctgca ttcaccatcg tcgctgcgtg gatgagagcc
    12781 gaaaccggag taggaccctc catcgcatct ggtagccaca cgtggagtgg gaactgagca
    12841 gacttgccta ctgccccgat aaagagcatg acaagtgccc atccgaggag ttcgacatca
    12901 acaggtaatc cattaacacc agtcgatggg tcatcgaaga cgacaccgaa atttagtgaa
    12961 ccatatatcc tgtacaagat gagaagaccc accatcagga agacgtcgcc aacacgtgtc
    13021 gtcatgaatg ccttcttagc cgcggaagca gcactcggtt tccagtagta aaatccgatg
    13081 agcaagtagg agcacagccc cataatctcc cagaatatga acaaccagag gaagttgtcc
    13141 gcaagcacca tgccgaacat acctgcagtg aagaggagat actctgcgaa gaaacgatgg
    13201 tttcgattct cattgatctc atctgtagtc atgtaaccga ttgcaaacca acagattagg
    13261 aaggttagga aggtggcaac gaagagtagc atgagggtga cctgatcaac ccatacacca
    13321 aaggtaatgt cctcaaatcc aggaactagc atccagccag cctcggtgtg agctaagaca
    13381 tcgaaagata tccaactcag tagattcacc gcagtgtcct ctgacagttg cgccgatccg
    13441 cagaggtggt caacaagcac ccagataccg ataccgagcg tcacggtcat tgtcataaga
    13501 gcagggatac cgccttcctt cagtgtgttt ttccaaaatt tgtgcccatt ccaaacctga
    13561 cccacgatga ggataatcgg gaatgcgatc attggtgctg caataatgag gaaagaccac
    13621 tcggtcgaac catctccact accaaacgca agacctaacg gaattaacaa cgcaggtaac
    13681 aggaacacta ggaggcgaga ttcattctgt gtttctccca tcttcatcac ctcagtgctt
    13741 cagcagatca acctcatcaa ggttgatcgt ctccctagtg ctatacaatg acaggaaaat
    13801 cgcgagtcct accgctacct cggcagcagc gattgcaatt gcaattgaaa tgaataccca
    13861 accttcgaca ttacctgtct gcatggacac agctacaaag ttcaggttaa cggcgttcaa
    13921 cataatctcg atacacatca agacaatgat tgcgtgcttt cgagtgaaag cccctgctag
    13981 tcctatgaag aacaaaatcg tagataaccc tgcgatatag cctggatcaa tcattcctct
    14041 tcacctccag tgatattacg ggcttgtttt gcccattcgt ctcgcttaac tcggcctgag
    14101 aagaactcga ttgcaacatt gacttcctct tcaatttcag aagtcatatt ggccaattga
    14161 ctgaatttgt atatcccaag cgcattcaac ttctcagcaa taaacggtcc aatacccttg
    14221 atcttctgca aatcatccgc ctcagaagca ctcgctacac caagagttcc gaaatcgatt
    14281 gtcttagctt tctcagcgac gcgaatgagt tcttcttcct tctttcgtgc cttctcgtcg
    14341 agattttcta gacgcttgcg gcgttcctcg agttctttgt ccatacgatc ttggcgttca
    14401 gcaacttctt tctcgacctg cttactttga gcctccgctt cggcttcatc ctctgcaacc
    14461 tctgcatcag cttcttcttt agacctagga atttgacaac ttagtaaggc aatatcgagt
    14521 tctggtagat ccaacttgcc atcaccattc aagtccatct gagacaccag aacatcgatg
    14581 tcccatggag gaaggttagc aatctcagcc ttggagagag caagctgaaa ttccatcgta
    14641 tcaatctcac cggaatcatc gagatcaatg gaacggaaga actggaacac tgtctgacct
    14701 ttctcagcaa ggaagtttgc aagcatagca agctcatttc cagacacctt gtccatagcc
    14761 ttgggcggta aacttcgctt gcttggtgcg gatgcgactt cgatggtact ttcattccag
    14821 acgagatttt ctagacgctc gtcacgaaca aggtatgatg caccaatcat cgccatagag
    14881 agaagagccc ctagtaccac aagtgcaagc gaccaatcga ccatgagtac atctgcgaaa
    14941 cgagctgtcg gagaggacat ctcaagcatt ggagcgtccc atcgcgaggc atccacaaga
    15001 aggcccatca agtagagacc gagtacgata atacccgctc tagcagagtt tcctagtgca
    15061 cgcatcattc gaagtcatcc cccataatct ggcgccgtgt gagcatcaca ccgaattgaa
    15121 caactagcat gacactgcct aggtaaacga gaatctggat cgctgaaaga agttcagccc
    15181 cggctagtac gaaaacacct gcaacggcga agaaacagaa ggtcaaagag agcatcgaat
    15241 gcgccactcg gttagcataa acgcaaccaa gtgcacctaa tattgcaatg aaactgaaga
    15301 ttccaaaggt gattaactca ccatcgatag ccatactcag gcctccgctt cagcattctc
    15361 cggtttatct cccgcttgct gcttagtttt actcgctttc tttgcagcac gttccctctt
    15421 tgatcgttct ttgtctgccc tcttagcaag ctccctatcc acagcttctt tgtggacaac
    15481 tggaagcact cttgttctcg atgcatccat ccataggtcg ttgcgtgtca ttccggacat
    15541 gccatcgtac tcatttgtca tgaagaagga attgaatggg catgactcca tgcaaagacc
    15601 gcaaaacatg cacctgccca agtcaattcg acctgacacg atgtcctgct ctgcaggaat
    15661 cattccctct aaatcaactg attcgatctt ccccgtatct tgccaacgaa cggaggcagt
    15721 gttaccactc aaatcgatta tctcggcaaa atcatattgt tgaggtgcag attcgtgggc
    15781 agtctccaat gaaaatgtgt tttcaatatc ctcaaaatct tctctctttt gagcgagata
    15841 ccctccttcc atgaattcaa cagtactcaa tcctaagttt tcatcagaag catccggcat
    15901 atccagtacg ttcactcgaa cctcggattc catgtgtaag caatcatttg gacaagctcg
    15961 aacgcatgcc ttgcaagctg tgcatgtttc ccaaacaaca ccaattctac cattgtagtt
    16021 gttaggaacg aaaagccatg gctcaagatc ttccaagcgt tcgtatggat acattaccgt
    16081 aactgggcga gaaggcgatt ttacgaaatg actggtttca cgatctgcgg cataaaatcg
    16141 tgattctcta tcgccgtctt tgattctgtt agctgtcatt tcatccagca ttttggcttc
    16201 ctttccgtga tagccggaag aaaagaactt gggtccaatt acaggtattg ttctgagagc
    16261 tgctcgcaat gtaatccaca ttggtcgaac tacaagattc cgaaaattcg gtgttgccct
    16321 tgggtgatac gccattttca atcctccata ttcattctag cgccaggtga agccttgtta
    16381 atctcactga catgataggg gcgccgttgc tcggcaagag catcctcatc ttcatccatg
    16441 actaagacga cgaaaaggac gatggaaatg atcgtgatta aggctggtac gatgagtggc
    16501 catgaaccgc catcgtatac tcctaacctg agccacatgc tcaatccaag ttgaattact
    16561 gacaaaggca ataggtatct ccaaccaaat tctagaattt ggtctgtcct aacacgatgt
    16621 agagacgcac gaacccagat gaagaagccg aacacgagcc atgctttcat caacaaccaa
    16681 attgaatgtg gaattatttg gaaaataaac tcgaaaatac ctccaataat tgggacagtg
    16741 attagtgaat cctcaaacgg gaattcccaa ccacccaaga aaaatagtga gaacaaaaga
    16801 cacgctgcta aggccctcag atactcagat gcgaagagaa ggccccatct cattcctcca
    16861 tattcggtcc accaaccctc taccaattca gcctctgctt caggcatatc gaa
//
LOCUS       DUKB01000060            6683 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_184257, whole genome shotgun sequence.
ACCESSION   DUKB01000060 DUKB01000000
VERSION     DUKB01000060.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6683)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6683)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6683
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_184257"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..235)
                     /locus_tag="HA345_02185"
     CDS             complement(<1..235)
                     /locus_tag="HA345_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010892076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HIH84199.1"
                     /translation="MSGDTFGGRMGLIFATIGAAIGTGNIWRFPRMVGANGGGSFLVP
                     WLIFLFVWSVPLVIAEFAIGKRARTGTVGAFRIF"
     gene            complement(238..2535)
                     /locus_tag="HA345_02190"
     CDS             complement(238..2535)
                     /locus_tag="HA345_02190"
                     /inference="COORDINATES: protein motif:HMM:NF012471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84200.1"
                     /translation="MSVVRRVSVHLVLLMFLLMPYAGAFGNVEAQDEPEEINEPLDIW
                     SKDYIDDVYPWGGDDAAQFKEYHTYFTMKDRMQHLAENNRNIMTFHEGLNGGVNARGQ
                     TTTANTYEGWYYNHKSPWVKITVNPQGGDCNDFVGDCGNYPDRPDVLLVGNHHAREWM
                     SYEVPMMFLEMVTHYYGKAGVDNDGDGLVDEDPWGDADGDGILDDDGDCLSLNSSHQD
                     SNGDGVLCGPGDHGVDEDFSEQYLTDLVNTREIYLIPMLNVDGNRYDREVYCGETAWE
                     NCAKSGWRKNLRDNTFVDNVIPDFFESVDEDCDGVDLNRNYQYEWGFPTQGTIPGAPG
                     TCTPQGGIDGAKNDVYTGPFEFEDNDGDGLINEDPVDGNNDDGDTKVDEDWAGGNSEP
                     ETLFIQDLTEMNDDNGDGASEFKVVFNWHSFSNLVLYPWGHCTGCQTPDHDFLVYHGD
                     QMAEMTNYENIQSSDLYPTTGDFCDWHYGVHNSYCFTMEIGNNFHEHPDDIDHIAALN
                     MGPTFYMVEVADDPAFRAVFGLGMDEIQWMQSPANITIPDEGDIPVELCLHPNFPLSN
                     DVNRSHVMYRQVTPTRMQNDYGPTEWKEIQPWDMTGFDQTTIRCELLDGTNGTMAIAN
                     IPIPETSVGEIHYRAMLGTTNGAFPINYPTVGEQPGDYYVLSLPYRAGFGSTLLAVMM
                     FILVASVVWGGLGFTLREMFRDRGDDDHSDQTDIVESSMQTVDVDSAQDYGRMTVAEL
                     KVILSERGMPTSGRKAELIDRLKGA"
     gene            2645..3757
                     /locus_tag="HA345_02195"
     CDS             2645..3757
                     /locus_tag="HA345_02195"
                     /inference="COORDINATES: protein motif:HMM:NF013117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HIH84201.1"
                     /translation="MDPLVQAIPGWENDFGMGFNQGTFVILGTILLICVMMRLWLKVM
                     ISKSFMRFGIEQKIAVQAIRDSSGTLGTAAASGFLALILRGMVDSSSIDGTSVMLPEL
                     IETILLPFTELVFYAAIVIWAFRLVPAVYAIVDRLDGDGDMEGTTKTLISALESVMRF
                     VIIAFGAVLIAGALGFDLSAILAGLGISGIALALAAKDSISNMFGAITVLLDRPFKVG
                     DWVVIGSSEGEVIEINLRTTMIRTSIDSVVTFPNASLVNTAIENYGLRRWRRYQPILH
                     LDLESDPDSVEAFCSQVLENIQTNEKTTKKDASFVRVRSLGPQAIDIACNLYWDTSSS
                     TEEQELKQIFLLNVMRMAQALGLHFFEPRVRRQVEG"
     gene            3762..4367
                     /locus_tag="HA345_02200"
     CDS             3762..4367
                     /locus_tag="HA345_02200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012674470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HIH84202.1"
                     /translation="MNLMVLLRHGQSVWNAENRFTGWVDVDLSPKGITEAEAAGDALA
                     DICFDVVHTSALIRAQRTAAIVMEKNRASNDPPVHRDERLNERHYGTLQSLDKDETRE
                     KHGADQVHIWRRSFDIPPPEGESLEMCANRTLPYLHEVIVPDLEAGSNILVAAHGNSL
                     RSIVMSIENLTPEEILSVEIPTGSPILYKFRDGLFSKVIDS"
     gene            4378..5151
                     /locus_tag="HA345_02205"
     CDS             4378..5151
                     /locus_tag="HA345_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84203.1"
                     /translation="MNMRPMLLSLLLICSTCVGCLSDNSNSEGVTLIVHFEETNGTIV
                     ESYVDGNLDSTTGATIRFDFSNTVSENQLVAFGVDLSNDEADLVIHPNEGSIINVEFT
                     EHGIHDLVAYAEDERGYRVHLPIVIRMDLRMDWTDTDTYNPSPLIIDPIPLNEGTSAA
                     SIFIDSTVENPNLIENIGGGRDVEITWRLVDQQEDACQNRDEVVSEGETVRWQTIHFN
                     TFEIHELRVDYNEGQDLIDVHQTVIIQYPQLESVPNPEY"
     gene            complement(5152..5454)
                     /locus_tag="HA345_02210"
     CDS             complement(5152..5454)
                     /locus_tag="HA345_02210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84204.1"
                     /translation="MRKRNIPFTIVADETYQNFRENGIEKSFPSFMWGAIRSPITMIL
                     ASLKGYIPMTLSISKMSTLPADILIDEDGKVVEAHYCKDTADHLPIDRMITFAKGE"
     assembly_gap    5507..5813
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5814..6025)
                     /locus_tag="HA345_02215"
     CDS             complement(<5814..6025)
                     /locus_tag="HA345_02215"
                     /inference="COORDINATES: protein motif:HMM:NF012787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HIH84205.1"
                     /translation="MPQLNIGDSAPNISLPAIDGTTFDMSSMKGKRVIFTFFRFSSCP
                     FCNFRIDRLMKRWNEFPEDTVMVGVF"
     assembly_gap    6039..6350
                     /estimated_length=312
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(6407..>6683)
                     /locus_tag="HA345_02220"
     CDS             complement(6407..>6683)
                     /locus_tag="HA345_02220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84206.1"
                     /translation="MTLPAYQIRNIMEPGFWGRIRSNPWVQGFILYSIFRAFYGLGIL
                     LVTWFIATETENPWWVSVLFLLASMIFSRILFRQIKQRRESASTNQV"
BASE COUNT         1660 a         1509 c         1336 g         1559 t
ORIGIN      
        1 caaaaattcg gaatgccccc acagttccgg tacgtgcacg ctttccaatc gcaaactcag
       61 cgatgaccaa aggcacagac caaacgaaga ggaaaataag ccacggaaca aggaatgacc
      121 ccccaccatt ggcacccacc attcgaggaa atctccagat gttgcccgtt ccaatcgctg
      181 caccaatcgt agcgaagatg agacccatac ggccaccgaa ggtgtctcct gacatactca
      241 cgcccccttc agtcgatcga tgagttcggc cttccggcca gatgtcggca tacctcgttc
      301 actcaatatt accttgagtt cggctactgt catcctaccg tagtcctgag ctgaatctac
      361 atccacagtt tgcatagatg attctacaat atcggtctga tcagaatgat catcatcacc
      421 tcgatcacgg aacatttccc tcaaagtaaa tccaaggcca ccccacacaa ctgatgcgac
      481 cagaatgaac atcatgacgg cgagaagggt actaccaaat ccggcacggt atggcaatga
      541 aagaacgtag taatcgcctg gttgctcacc aacagttggg tagtttattg ggaaggctcc
      601 atttgttgtt ccaagcattg cgcgatagtg aatttcccca acactggttt cgggaatcgg
      661 gatgtttgct atcgccattg ttccgttagt gccgtcgagt aactcgcaac gaatcgttgt
      721 ctggtcaaaa ccagtcatat cccatggctg tatctctttc cattccgttg gaccgtaatc
      781 gttctgcatc cgggttggag taacttgacg atacatcacg tggctccggt taacatcatt
      841 agacaatggg aaattagggt ggaggcataa ttccactgga atatcgcctt catcagggat
      901 tgtgatgttg gctggactct gcatccattg gatttcatcc atacctaatc cgaatacagc
      961 acggaatgcg ggatcatcgg ctacttctac catgtagaac gttggaccca tatttagcgc
     1021 cgcaatatgg tctatatcat cagggtgctc gtggaaatta ttcccaatct ccatggtgaa
     1081 acagtacgaa ttatgcacgc cgtaatgcca gtcacagaaa tctccggtcg taggatagag
     1141 atccgatgat tggatgttct catagttcgt catctctgcc atttgatccc cgtggtatac
     1201 taggaaatca tgatcaggag tttgacaacc agtacaatgt ccccatggat agagaacaag
     1261 attactgaat gaatgccaat tgaaaaccac cttgaactcg gatgctccgt ccccattatc
     1321 atcattcatt tcggtcaagt cttggatgaa gagagtttca ggctcagaat ttccacctgc
     1381 ccaatcctcg tccacctttg tatcgccatc atcattgttc ccatcaactg gatcttcatt
     1441 gattaggccg tcaccatcat tgtcctcaaa ttcaaacggc cccgtgtaaa catcattttt
     1501 tgcaccatca attccacctt gtggagtgca agtcccgggt gctcctggga tagtaccctg
     1561 agttgggaat ccccattcat actggtaatt tcgattcaaa tctactccgt cacaatcttc
     1621 atccacactc tcgaagaaat ctggtattac gttatcaaca aaggtattgt cacggagatt
     1681 ctttctccat ccactcttgg cacaattctc ccaagcggtc tctccacagt atacctctcg
     1741 gtcataccga ttaccatcaa cattgagcat cggaataaga tagatttctc ttgtgtttac
     1801 tagatccgtg aggtactgtt ccgagaaatc ctcatcgaca ccatgatcac cagggccaca
     1861 gaggacacca tctccattac tatcctggtg agaagagttg agagacaaac aatctccatc
     1921 gtcatcgagg ataccatcac cgtcagcatc accccatgga tcctcatcaa cgagtccatc
     1981 accgtcgtta tccacaccag ccttaccata gtaatgagta accatctcaa ggaacatcat
     2041 gggtacctca taggacatcc actcacgagc atgatgattc ccaactaaca agacatccgg
     2101 gcgatcagga tagtttccac aatcccccac aaagtcgttg caatctccgc cctgagggtt
     2161 cacagtaatc ttcacccatg ggctcttgtg attgtagtac caaccttcgt atgtgttcgc
     2221 agtagttgtc tggcccctgg cattaacccc gccattcaag ccttcatgga atgtcatgat
     2281 attgcggtta ttctccgcta ggtgttgcat ccgatctttc attgtaaagt aagtgtgata
     2341 ctccttgaac tgggctgcat catcacctcc ccatggatac acatcatcga tgtaatcctt
     2401 cgaccaaatg tcgagtggtt cattgatttc ttctggttca tcttgagctt caacattgcc
     2461 aaatgcgcct gcatatggca tgagaagaaa catgaggagg acgaggtgga ctgaaacgcg
     2521 acgcacgacc gacatggaga ctcatctccg cacagacgac tgcaccactt caagccgacg
     2581 cacgcaaggt cctgtaactc tcttagccga aagcgattca aagtatcatg gtcagaagaa
     2641 tcgcatggac cccctcgtgc aggcgattcc aggctgggaa aatgacttcg gaatgggctt
     2701 caatcagggc acattcgtga tactcgggac aatcttgttg atttgtgtaa tgatgcgcct
     2761 ctggctcaaa gttatgatct caaaatcctt catgcgattt ggtatcgagc agaagattgc
     2821 tgtccaagct attcgagatt cctcgggaac ccttggtacg gctgcagcaa gcggattcct
     2881 tgcacttatt ctgcgaggaa tggtggactc ttcatccata gatgggacct cggtcatgtt
     2941 acctgaactc atagaaacca tcttgcttcc atttacggaa ctcgtattct atgctgccat
     3001 tgtcatctgg gcgttcagat tggtacctgc tgtctacgca atagtcgacc gtttagacgg
     3061 ggacggggac atggagggga cgacaaagac gttgatctcc gcccttgaaa gtgtgatgcg
     3121 cttcgttatc atcgccttcg gagcggtact tatcgccggc gcactcgggt tcgatctctc
     3181 agccatccta gcaggactag gcatcagtgg aattgccctc gcactagctg caaaggattc
     3241 catctcaaac atgttcggtg caatcactgt tcttctagac cggcccttca aagttggaga
     3301 ttgggtcgta atcggcagca gtgaaggcga agtcatagaa atcaatctcc gaaccaccat
     3361 gattcgcacc tcaatcgatt cggtcgttac ctttccaaat gcatctcttg tcaatacggc
     3421 gattgaaaac tacggtctgc gacgatggcg tcgctaccaa cccatccttc acctcgatct
     3481 cgaaagcgat cctgattccg tggaggcctt ctgcagccaa gtccttgaga acattcagac
     3541 aaacgagaag accaccaaaa aggacgcttc attcgtccgc gtacggtccc ttggaccaca
     3601 agcgattgac atcgcatgca atctctactg ggacacctca tcctcaacag aagagcagga
     3661 actcaagcag attttcctgc ttaacgtgat gagaatggca caagcattgg gtcttcactt
     3721 ctttgaacca agggttcgca ggcaagtcga agggtgatct gatgaatctc atggttctcc
     3781 tccgccacgg acaatccgta tggaacgctg agaatcggtt cacaggttgg gtcgatgtcg
     3841 acctctcacc aaagggaatt actgaagccg aagcagcagg agatgcgctg gccgacatat
     3901 gcttcgatgt cgtccacacc agcgctctga ttcgagctca gcgcacagcc gcgattgtta
     3961 tggagaaaaa ccgagcatcc aatgacccac ctgtccatcg agatgagcga ctcaatgaga
     4021 gacactacgg caccctccag agtctggaca aagacgagac gcgggagaag catggagcag
     4081 atcaagtcca tatctggcga cgttctttcg atatccctcc gccggaaggt gagagcttgg
     4141 agatgtgtgc taatcgcact ctcccatacc tgcatgaggt catcgttccc gatcttgaag
     4201 cgggatcgaa catactagtt gcagctcatg gtaattcact tcgaagcatt gtaatgtcta
     4261 tcgaaaacct gacacctgaa gaaattctat ctgtagaaat accaacaggt tcgccaatac
     4321 tgtataaatt cagagacgga ctattctcaa aagtgattga ttcatgagga gtaaacaatg
     4381 aacatgcgtc cgatgctgct gagtttgcta ctcatttgca gcacttgtgt cggttgtctt
     4441 tcggataatt ctaattcaga aggcgtcact ctgattgttc attttgaaga aaccaatgga
     4501 accattgttg aatcctacgt ggatggtaat ctcgactcta cgaccggtgc cacaattcgc
     4561 tttgatttct caaatactgt atctgaaaac caattagtgg cgttcggcgt agatctctca
     4621 aacgatgagg cggatttagt aatccatcca aatgagggtt cgataatcaa tgtagaattt
     4681 acagaacatg gaatccatga cttggtagcc tatgcagagg atgaaagagg atatcgagtc
     4741 catcttccga ttgtaattcg gatggatcta cgcatggatt ggacggatac tgatacctac
     4801 aatccaagtc cgctaataat cgacccaatt cctctgaacg aagggacttc agctgcttcg
     4861 atcttcatcg actccacggt agaaaatcca aacttgattg agaatatcgg tggtggacgg
     4921 gacgtggaaa ttacatggag attggtagat caacaggagg atgcatgcca gaaccgtgac
     4981 gaggtggtta gtgaaggtga gactgttcga tggcaaacaa ttcacttcaa tacatttgaa
     5041 attcacgaac ttcgagtcga ttacaacgaa ggacaggacc tcattgatgt ccatcagacg
     5101 gtgataattc agtatccgca actggaatcg gttccaaatc cagaatactg actattcgcc
     5161 cttcgcaaag gtaatcattc gatcaatggg gagatgatct gctgtatctt tgcaatagtg
     5221 tgcctcgaca actttaccat cctcatcaat cagaatatct gcaggtaaag tagacatctt
     5281 cgaaatagac aacgtcattg gaatatatcc cttcaagctt gccagaatca tagttattgg
     5341 agaacggata gcaccccaca tgaagctagg aaaggacttc tcgatgccat tctctctgaa
     5401 attctggtat gtctcatctg ctactatcgt gaaaggaata tttctctttc tcattcgccg
     5461 tgacagctca tcgatttgag catcaaaaac acccaccatc accgtannnn nnnnnnnnnn
     5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntcaaaaa
     5821 cacccaccat caccgtatct tctggaaact cgttccatcg cttcattagc ctgtcaattc
     5881 ggaagttgca aaatgggcag gatgaaaatc ggaaaaatgt aaaaattact cttttaccct
     5941 tcatggaaga catgtcaaat gtggttccgt caatcgcagg taaggagata tttggagcgg
     6001 aatcaccaat atttagttgg ggcatgtgta agtgatttnn nnnnnnnnnn nnnnnnnnnn
     6061 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn agttggggca
     6361 tgtgtaagtg atttctgaat catgtaaaaa gtagtgtatt caagattcac acttgattgg
     6421 ttgaagcaga ttctcgtctt tgtttgattt gccggaaaag aattctagag aagatcatcg
     6481 aggcaagaag aaacaacact gaaacccacc aaggattctc ggtctcagtt gcaataaacc
     6541 atgtgacgag aaggattcct aatccataga acgctcggaa tatagaatac aaaataaagc
     6601 cttgaaccca tggattggaa cggatgcgcc cccaaaatcc cggttccata atgttacgga
     6661 tttggtatgc tggcaaagtc ata
//
LOCUS       DUKB01000061           11053 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_144207, whole genome shotgun sequence.
ACCESSION   DUKB01000061 DUKB01000000
VERSION     DUKB01000061.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11053)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11053)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11053
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_144207"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..5353)
                     /locus_tag="HA345_02225"
     CDS             complement(<1..5353)
                     /locus_tag="HA345_02225"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84207.1"
                     /translation="MGNWYTATVLVFLMALTPWASITEEITPNNSESLDTPPISSVQV
                     QESLPLWTPGSAVIDHDLPRSGSELVSVIVLTDRLTTLHEWQIDNGVLPKQIENEDQF
                     LIPAPPTQGILEHRLMTLSGVQIAKLPGVPGVRAVISDFDIPRPAGYSMTAEPASVRS
                     GEIHGATDVWDDGRNGTGIIVAVADSGVDFAHPDLNGTQARYNNATSPYHGWPLMHDP
                     VSILDWLRDGEAYPDSDGSWWADTSETDADSDNDSELDNSSLSIAGIPQSISGTYHIG
                     LHPDSKLVSRAGGDVPVIVVDEVTSGVYDTVYVDLDRDSSFSDEVPMRRGSETAGLDL
                     NGDGLWDRSGGMIWWISDGIHGVPYGDVYAARNGYQNRIADSGDLVLFMINDVNEGGG
                     NHGTLCASAINAQGVVNSGSVLGMAPDSKTTAVANLYSYGSWFDSYRFIAEGYDGNAS
                     TEEQPHIGSFSFGYSGTHDDGADANSLYLDWLTRVHSPNTTYLVATGNGGHGYGTTAA
                     PGGAHGVISVSAFSSKSGESNGGTWGQSSSWSNRGPNSVSRLDPDVVAVGWSATGDRT
                     LNEVTNANSATTTWGGTSLATPIAAGLAALIYESWIEVHGSPPNSQQVRDIMMSTADD
                     RGYDPFVQGAGWVNVSRAVDTILGVNGSMSVRPAAWMTGEMDGLHRDANLNMILPGGN
                     QSVQIELENSGLVSVEINLQPEVIAPLHHDIMRWNSTDTGPNATWDGYQSGTPHILIP
                     LHIANDSNISLPNGTTLLRARAAMDGAGFDGNKNYESENRIYLRLWRWTDRDGDGIFH
                     NDIDGDRFVDASEWTENSNEFAMLTEHVYASGQVEVRMGKPLAESDDGLLLAVWRENI
                     RTNEIDPLPVEIDWTAFGPTSDVWVSAVSNITVPANTTMTTNVTISVPSDADPGVRQH
                     GLRMDYNTVGDPENVTSWLWPIITNVAYQGSFSVDPRPLDGNISNQSLFEETWIQGAQ
                     RWGWRAESGDWKTFSIDWPAGYTVNGTALIDVDWPDNEFTDIDVFWMSEVDHPYSFTN
                     PLDYGPHNLQIESNSKGMHRGSGIYGHETSTDESHEFLTASSSPGVKQVLLHSATHGV
                     GTNDNPLSIDVGMLAPMDGGLGVEVHDWRTSNRSETIRIGSTMDVEITGATGVGWSQP
                     QHLSGQYVGQDTPGDKTSASYIHSFSIQDIEEITISTSSTTIPDLDLYIGQDINGNGV
                     MDFGNEEKGSSGNWNSDESVSLDNPGDGLWFVAVHGFDVGNGSGTFSLDIDMVPETSN
                     TGLQVSNITEMDQSQITTNWPNGSLEIAGETPIAAWELNLSLIRPWDSGHWTGYIDLE
                     LEGGAEIRLVYTYDLIESPPSVEFHVPTPVNGTRTNSTIPLALNLVDLDSGFNLTGLD
                     WNFSHTYQVGTADLTWGDGIWLYSIECEFMNSTVVNRSTQFFTMVNGTGNESNISRDV
                     FLNETYRSVWINGTVPENEGWYGYEVSLLDVTNRLGLASFHVEYDVTAPLLALNNWRT
                     ITNHSTVDDVVILTEPGAIVWVNGTLYYPDANGEIPLTLELSPSNWTMTETGLDWVQQ
                     NRFEIAVIDAAGNWNRLKHQMVYDPHPPGSGGEFRDAITLEGVMPIEPNGIHLVDTSQ
                     MQVGVNASIVDIVIEVPNDTATVCLTLTHPNGSDLNETCLPSFSQAWPTTNGSAWLPE
                     PVENQAPHRSDVVIRLDFSDEVDGIYGIRVDVIDFADNRGFEESFIDIDRLSPVIEWV
                     GFEPVWDRTSMVISASFGEWTDHRLTMNGDNVIQSAGSSLSESILFKRTGNHTFCISA
                     "
     gene            5445..5517
                     /locus_tag="HA345_02230"
     tRNA            5445..5517
                     /locus_tag="HA345_02230"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5479..5481,aa:Gln,seq:ttg)
     gene            complement(5515..6027)
                     /locus_tag="HA345_02235"
     CDS             complement(5515..6027)
                     /locus_tag="HA345_02235"
                     /inference="COORDINATES: protein motif:HMM:NF024423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HIH84208.1"
                     /translation="MDREPFLEVLGLKEVDRAGWKRSGLTNVESVAAHSWGVAFLAMQ
                     ICPPQLDRLKVIEMAVCHDVAEVRVGDITPHDGISSEEKVRVETEAMLSISKGFPQGE
                     RMLELYREYEAGETHEARFLKLCDKLDMAFQSYVYQSRTENSLLNFRKTANRLVVEYG
                     YPDLLDGSSE"
     gene            complement(6027..7238)
                     /locus_tag="HA345_02240"
     CDS             complement(6027..7238)
                     /locus_tag="HA345_02240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015090344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HIH84209.1"
                     /translation="MSNWDTFDLANPTEEHAMLREMIRDFVESEVEPQAHEHDKHERF
                     NLSLFRMLGEYGLLGITVPEEYGGSGLDATAAVIAHEEIAASDPGFGLAYLAHSMLFV
                     NNLAQNGSEEQKARILPKVCSGEWVGAMAMSEPNYGTDVLGMETTADQDEDGNWVING
                     NKMWITNGSIDDDRTPADVVWVYARTGLDERGRPELSTFIIEKGAPGYTVGQKIYDKT
                     GMRASNTAELVFADCKVGPESLVGSPGSSIHHMMKNLEIERLTLAAMSLGIARRSLDI
                     MNRYASDREAFGKQIRSFGQMQRHIGESYAEYRAMRAYIYDTARLLDLNDGGQRLDSD
                     GVKLYATTKAKEIADRAIQVLGGYGYVAEYVVERLWRDSKLLEIGGGTLESHHKNITR
                     DLAKDPDAVNR"
     gene            complement(7287..8981)
                     /locus_tag="HA345_02245"
     CDS             complement(7287..8981)
                     /locus_tag="HA345_02245"
                     /inference="COORDINATES: protein motif:HMM:NF024890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84210.1"
                     /translation="MADVGGPISYYWRSISNVDFGVGTFMGYWHILAIFSILSAIFLI
                     FLSYLVLRAGPKKAKNRFMALMLFTEALRCSTAMLFWVYAWPESFLKVLEPARVVYYT
                     MSFQLFLLYMIAATFYSEKQWAKRVSEFFRIHGIYLLPIFCFGFILFASELLGGRAVA
                     IGDISWVYCQDVGVGYGTTASGEPLPFEVSCTSRYAELYPMTMSNVALGPLTRILLFV
                     PLIGAIVAMVSVGRSQKRIKESGNSSLIGEVRAVRLGFIGKTVLQISSTLVLFTIVGI
                     LGQSPSMETSPFNEALDVPTLLIALGPLIPTTVVLAALFEGLIFTYAVIKNDMFGIDE
                     KLRTTFITATFAGFGAFLLLISTEAMESIFDQGWIGGVIIGLPLIVFRKPIFTTLSKF
                     STSIMPESHTDEELGYLEMYSLAMKDGNITENERRMLDLQARTYGIEEERRTYLEKWF
                     DENHVNNENSSMVLADKYGVSGVNLMSVFSTTGDAPIDEREISESFTKMDQNNDNVIS
                     REEFSQSEEVAKLPEDSQDELFHEIDLNKDGVLQYDEFRTIAQITEAQILSQQEQE"
     gene            complement(9048..10835)
                     /locus_tag="HA345_02250"
     CDS             complement(9048..10835)
                     /locus_tag="HA345_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013177146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84211.1"
                     /translation="MTGERVSPFLRLLKAVRPHSTTVRLASICSILNKIWDLAPPLLI
                     GVAVDVVVEREDSLLAGWGLIDPWHQLIALSIATFLIWGLESVFEYLYGILWRNLAQT
                     VQHEFRQNTFEHVLKQGMGWFDERQKGDLMAVMNDDINQLERFLDKGANDLLQVTTTV
                     LIVGAVFIAISWQVALFAVLPIPIIIWGSFRYQRSLEPRYAEVRAAAGRINALLENDL
                     SGMTTIQSFTAEDHEASRIKSISEEYKEANRRAIRLSAAFVPLIRMAILVGFTATLLL
                     GGWITLEDKLAVGAYSVLVFMTQRLLWPLTRLGETFDLYQRAMASTTRILDLLETPIS
                     VEDGLESISLDEAASSSLQIESLTFRYPGRTQLFDELNLEIEAGSTLGVVGPTGSGKT
                     SLVRLLLRFNEPSGGGIYWAGKDIRHLSLESLRGNIALVSQHVTLFPTTIRDNIRYGR
                     PDATDTEVEDAARIAEAEEFIDALPARWDTLVGEGGHRLSGGQRQRVAIARAILKNAP
                     FLILDEATSAVDNETEAALQRSIHHISRGRTTLIIAHRLSTVRRADRIIVMDEGTVVE
                     EGNHDDLVDLGGLYSRLWTVQTGENILSS"
     gene            complement(10873..>11053)
                     /locus_tag="HA345_02255"
     CDS             complement(10873..>11053)
                     /locus_tag="HA345_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HIH84212.1"
                     /translation="EAFQDGQANARGAIWKLPDGSSSVANALRFMSATPASANGLVPS
                     LDEHRDEILRDWSLE"
BASE COUNT         3125 a         2797 c         2329 g         2802 t
ORIGIN      
        1 atgctgagat gcagaacgta tggtttcccg tccgtttgaa taagatagat tccgacaatg
       61 aagagcctgc agattggatg acattatcac cgttcatcgt caatcgatga tctgtccatt
      121 cgccaaaaga tgcgctgatg accatacttg tccgatccca tacaggttcg aaaccaaccc
      181 attcaatgac tggagataaa cgatcaatgt cgataaacga ctcctcaaaa ccacgattat
      241 ctgcgaaatc gatgacatcg actcgtatgc cataaatccc atcaacctca tcgctgaaat
      301 ccaatcgtat cacaacatcg cttcgatgtg gtgcttgatt ttctactggt tcaggtagcc
      361 aagcagatcc attagtagtc ggccatgctt gtgagaaaga aggaagacag gtctcattca
      421 aatcagaacc attcggatga gtaagcgtta gacagacagt agcagtatca ttcggcacct
      481 cgattacaat atccacaata ctagcattca caccgacctg catctgagaa gtatccacaa
      541 gatggatacc attcggctcg attggcatca ctccttcgag ggtaatcgca tcacgaaatt
      601 cgcctcctga gccaggtgga tgtggatcat acaccatctg atgtttcaat cggttccagt
      661 tccctgcagc atcaattaca gcaatctcga aacgattctg ctgtacccag tcaagtccgg
      721 tttccgtcat ggtccaatta gaaggagata gttccaaagt caaaggaatc tcaccattcg
      781 catcaggata gtacaatgta ccattgaccc aaacaatggc tcccggttca gtcaaaatta
      841 ccacatcatc aactgtcgaa tgattagtga ttgttcgcca attgttcaag gcaagcaaag
      901 gtgcagtgac atcatactca acatggaaag aagccagacc caagcgattt gtaacatcga
      961 gtaaactgac ctcataccca taccatccct cattctcagg tacagttccg ttaatccata
     1021 cagatcgata ggtctcatta aggaatacat ctcgagatat attcgactca tttccggttc
     1081 cattgaccat tgtgaaaaat tgagtgctgc gattgacgac tgtgctgttc atgaactcac
     1141 attcgatact atagagccat attccatcac cccaagtgag atcagctgta cccacttgat
     1201 atgtatgaga gaaattccaa tctaacccag tgaggttgaa tcccgaatca agatcaacta
     1261 gattcaatgc aagaggtatg gttgagttag ttctcgttcc attgactggt gtaggaacat
     1321 ggaattctac actaggagga gattctatca aatcgtaagt atatacaaga cgaatctctg
     1381 cccctccttc cagttcaagg tcgatatacc ccgtccaatg gccggagtcc catggacgta
     1441 tgagagagag gttgagttcc catgctgcaa taggggtttc tccagcaatc tccagagacc
     1501 cattcggcca atttgttgta atctgtgatt gatccatctc tgtgatattt gaaacttgga
     1561 ggccagtgtt cgatgtctct ggaaccatgt caatatcaag actaaacgtc ccactaccgt
     1621 tacctacatc gaaaccgtgt actgccacga accagagtcc atcaccggga ttatcgagag
     1681 atactgattc atctgaattc caattacctg aggacccctt ctcctcatta ccaaagtcca
     1741 tcacaccgtt tccgttgata tcttgaccga tgtataggtc aagatcaggt atggtcgttg
     1801 aagatgtgct gatagttatc tcctcgatat cttgaatgga aaacgagtga atataggagg
     1861 ctgatgtctt gtcccctgga gtatcctgac caacatactg cccactaagg tgttgaggct
     1921 gactccaacc aacgccggtt gcaccggtga tttcaacatc catcgtagaa ccaatacgga
     1981 tagtctccga ccggttgctt gtcctccaat cgtgaacctc gactcccaat ccaccatcca
     2041 ttggtgcaag catacccaca tcaatcgaca gaggattgtc attagtacca actccatgag
     2101 tagccgaatg aagaaggacc tgctttactc ctggactgga agatgcagtt aggaactcat
     2161 gggattcatc tgtgctagtt tcgtgaccat atattccact tccacgatgc attcctttag
     2221 aattggattc gatttgcaga ttatgaggac catagtcgag aggattagtg aaactgtaag
     2281 ggtggtccac ttccgacatc cagaatacat caatatccgt gaattcgttg tccggccaat
     2341 caacatcaat tagagcagtg ccgttgaccg tatatcctgc tggccaatcg atactgaatg
     2401 tcttccaatc ccctgactcc gcacgccacc cccatcgctg cgccccttga atccaagttt
     2461 cttcaaacag gctctgattc gatatattac catcaagggg tcgcggatca acactgaagc
     2521 ttccctgata agcaacattc gtgatgatag gccatagcca agaggtgaca ttctcaggat
     2581 ctccaactgt attgtaatcc atccgaagac catgttgtct aacgccagga tcggcatctg
     2641 aaggtaccga gattgttaca ttggtcgtca tggtagtgtt tgcaggtaca gtgatattac
     2701 tcacagcaga tacccaaaca tctgacgtag gcccgaatgc agtccaatca atctcaaccg
     2761 gtagagggtc aatttcattg gttcgaatat tctctcgcca tactgctaaa agtaggccat
     2821 catcggattc agccaatggt ttacccattc taacttcgac ctggccagag gcataaacgt
     2881 gctcggttag catagcgaac tcattcgagt tctctgtcca ttcagatgca tctacgaaac
     2941 ggtcaccatc gatatcattg tgaaagatac cgtcaccatc acgatctgtc catcgccata
     3001 aacggaggta tattctgttc tcagactcgt agttcttgtt cccatcaaaa cctgctccat
     3061 ccatcgctgc tcgcgctcga agaagtgtgg tcccattagg caacgatatg ttcgagtcgt
     3121 tggcaatgtg aagaggaatc aggatatgag gagtacctga ttgataccca tcccaagtcg
     3181 cattcggtcc agtgtctgtg ctattccaac gcatgatatc atggtgaaga ggtgcaatga
     3241 cctccggttg aagattgatt tcaaccgaaa ccaatcctga attttcgagc tcaatctgaa
     3301 cgctctgatt gccacctggg agaatcatgt tcagattcgc atctcgatgt aaaccgtcca
     3361 tttccccagt catccaagca gcaggcctga ccgacataga accgttcaca ccaagaattg
     3421 tatccacggc tcgcgagacg tttacccagc cagcaccctg aacaaaggga tcgtatcctc
     3481 gatcatcagc agtagacatc atgatgtcac gtacctgctg agaattaggc ggtgaaccat
     3541 ggacctcgat ccatgattca tagattagag cagcaagacc agccgcaatc ggagttgcaa
     3601 gcgaagtacc gccccatgta gtcgttgcag aatttgcatt tgtgacctcg ttcaatgtcc
     3661 gatctccagt tgcggaccat cctacagcaa ccacatcagg atctagacga cttactgaat
     3721 ttggacctcg attagaccaa gaggatgatt gcccccatgt acctccattt gattcacctg
     3781 acttagaact gaacgcactg acagatatca ctccatgtgc cccaccaggt gccgcagtgg
     3841 ttccatagcc gtgcccacca ttaccagtag caacgagata cgtcgtattc ggactatgaa
     3901 cacgggtaag ccaatcgaga tagagactat tggcatctgc tccatcgtca tgggttccgg
     3961 agtaaccaaa cgagaaggat ccaatgtgtg gctgctcctc agtactcgcg ttcccatcat
     4021 agccctcagc aatgaaacga taggaatcaa accatgaccc ataggaatac agattggcaa
     4081 ctgcggtggt cttcgaatca ggtgccatac caagtactga accactgttc actactccct
     4141 gtgcattgat tgcagatgca caaagtgtgc cgtgattccc acccccctca ttaacgtcat
     4201 taatcatgaa aagcacaaga tcgccactat ctgcgattcg attctgatat ccattacggg
     4261 ctgcatatac atccccatat gggactccat gaataccatc cgaaatccac caaatcatac
     4321 cacccgaccg atcccacaat ccgtcgccat tcaaatcgag accagctgtc tccgaaccac
     4381 gtcgcatcgg aacctcatca gagaatgaag aatcacgatc aagatcaaca tacacagtat
     4441 cgtagacacc agatgtaacc tcatctacaa cgataacagg aacatccccc cctgcccgag
     4501 agacgagttt agaatcgggg tgaagaccga tatgataggt ccctgagata gattgtggaa
     4561 tacccgcaat agatagagag gaattgtcca gttcggagtc attgtcacta tcagcatcag
     4621 tttcacttgt atccgcccac caagacccat cactgtcagg atatgcctca ccatcacgaa
     4681 gccagtcgag aatactgact ggatcatgca tcaagggcca tccatggtag ggtgaagtcg
     4741 cattgttgta ccttgcctgc gtcccgttaa ggtcaggatg agcgaaatcc acgccactat
     4801 cagcgactgc gactatgatt ccagtaccat ttcggccatc atcccaaaca tccgttgctc
     4861 catgaatttc tcctgacctc acgcttgccg gttctgcggt catactgtat cctgcaggtc
     4921 ttggaatatc gaaatcggaa atcactgcac gaacacctgg aacaccgggt agctttgcaa
     4981 tctgaacacc actaagcgtc atcaaacgat gctccagtat tccctgagta ggaggagctg
     5041 gaatcaggaa ctgatcttca ttctcaatct gcttaggcag aacaccattg tcaatctgcc
     5101 attcatgaag agttgtaaga cgatctgtga gaacaattac tgatacgagt tcactcccag
     5161 aacgaggtaa atcatgatca attaccgctg aacccggcgt ccaaagagga agggattctt
     5221 gaacttgaac agaagaaatt ggaggggtat cgagcgattc cgaattattc ggagtaatct
     5281 cctctgttat cgatgcccac ggagtaagag ccatgaggaa aacgagaact gtcgccgtgt
     5341 accaattccc cataccttag gctcacaatc tcagcctttc accctgtcgt ccaccagtta
     5401 cacccgtcaa gtccaaatct atcggactct cggattaccc gcatagccct gtggtgtagt
     5461 ggtccatcat accaggtttt ggacctggtg accctggttc gaatccgggc agggctactc
     5521 tgaagagcca tccaataagt cagggtaacc atattcgaca acgagtcgat tggccgtctt
     5581 ccgaaagttc aggaggctgt tctccgtacg tgactggtac acataagatt ggaaagccat
     5641 gtcaagtttg tcacataatt tgaggaaacg tgcttcatgg gtctcgccag cttcgtactc
     5701 acggtagagt tcgagcatac gttctccttg agggaaacct ttcgagatac taagcatagc
     5761 ttcggtctcg acacgaacct tctcttccga ggaaatccca tcatgaggag taatatctcc
     5821 aacacggact tcagccacat cgtgacatac agccatctcg ataaccttga ggcgatcgag
     5881 ttgaggtgga caaatttgca tcgcgaggaa ggcgaccccc catgaatggg ccgcaacaga
     5941 ttctacgttc gtaagaccag aacgcttcca tcctgcacga tcgacctcct tgagtccgag
     6001 aacctctagg aaaggctctc tatccatcaa cgattcaccg catctggatc cttcgcaaga
     6061 tctcgtgtga tgttcttgtg atggctctca agtgtaccgc caccaatctc taacaatttc
     6121 gaatcacgcc agagacgttc tactacatat tcggcaacat agccgtatcc gcctagaacc
     6181 tgaatcgctc gatcggcaat ctccttcgcc ttggtcgtag cgtaaagttt cacgccatca
     6241 ctatcaaggc gctgaccgcc atcattgagg tccaataatc gagcagtgtc ataaatatag
     6301 gcgcgcatgg cacggtactc tgcatacgat tcaccgatgt ggcgctgcat ttggccgaaa
     6361 gaacggattt gctttccgaa agcttctcga tcactcgcat atcgattcat gatatccaat
     6421 gaacgccggg ctattcccaa ggacattgca gcgagagtaa gtcgttcaat ctcgagattc
     6481 ttcatcatat gatgaattga ggaaccagga gaaccaacta gcgactctgg gccaacctta
     6541 caatccgcga aaacgagttc agcagtattg gatgcacgca tacctgtctt gtcatatatt
     6601 ttctgaccta ccgtatatcc tggagccccc ttctcgataa tgaacgtgga aagctctgga
     6661 cgacccctct catctaaccc agttcgagca tacacccaaa ccacatctgc aggcgtccga
     6721 tcatcatcta tggagccgtt cgtgatccac attttgttgc cattaatgac ccaattacca
     6781 tcctcgtctt gatctgcggt ggtttccatg ccaagcacat cagtcccata attaggttca
     6841 gacattgcca tagctccaac ccattcacct gagcaaacct ttggcagaat tctcgctttt
     6901 tgttcctcgg aaccattctg tgcaagattg ttgacaaaga gcatagagtg agcaagataa
     6961 gcaagaccaa agccagggtc agaagccgca atctcctcat gggcgataac ggctgcagta
     7021 gcatcaagac cggatccacc atactcttct ggaactgtga ttcccagaag tccatattcg
     7081 cctaacattc gaaagagtga cagattgaag cgttcgtgct tatcatgctc atgagcctga
     7141 ggttcaacct ctgattcgac aaagtcacgt atcatctctc gaagcattgc atgctcttct
     7201 gtaggattag caagatcgaa ggtgtcccag ttactcatgt ccctcaatta ctcccatgga
     7261 attcagacct atgaagagtg ctaccgttac tcttgttcct gctgtgatag aatttgggct
     7321 tcagtaatct gtgctatggt tctaaattca tcatattgaa ggacaccgtc cttgtttaga
     7381 tcaatctcgt gaaaaagttc atcctgcgaa tcctcaggca acttggcaac ctcttcagat
     7441 tgagagaatt cctcccttga gattacattg tcattattct gatccatctt agtaaaggac
     7501 tctgaaatct ccctctcatc gattggagca tcccctgtag tactgaacac tgacatcaaa
     7561 ttgactccac tcacaccgta tttatccgcg agaaccatgg atgagttttc gttgttaaca
     7621 tgattctcat caaaccattt ctcaagatat gtccgccttt cctcctcaat cccataagtc
     7681 cgtgcttgga ggtctagcat ccttcgctcg ttctcagtga tatttccatc cttcattgcg
     7741 agagaataca tctcgagata accaagctct tcatcagtat gagattcagg cataatagaa
     7801 gttgagaatt ttgacagagt tgtgaaaatt ggtttccgaa aaacaatcaa tggcaaaccg
     7861 ataataactc ctccaatcca accttggtcg aatatggatt ccatggcttc agtgcttatt
     7921 agcaatagga atgcaccaaa gcctgcgaat gtggcggtga tgaatgttgt tcgtaatttc
     7981 tcgtcaattc caaacatgtc atttttgatt actgcatatg tgaaaattaa cccctcaaat
     8041 aatgcggcaa gaacaacagt tgttggtatt aatggcccta acgcgatcaa taatgtggga
     8101 acatctaatg cttcattaaa cggacttgtt tccattgaag gagattgtcc aaggattcca
     8161 actattgtga acagaactag agtagatgaa atctggagta cagtttttcc aataaatccc
     8221 aaacggacag cacgaacttc tccaattaga cttgagtttc cactttcttt gattctcttt
     8281 tgtgaacgcc caacagaaac cattgcaaca atagcaccga taagtggtac gaaaagaaga
     8341 atccgagtaa gtggccccag tgcaacattt gacattgtca ttgggtaaag ttctgcatat
     8401 ctcgatgtac acgatacttc gaatggcaac ggttctccag atgctgtagt tccatatcct
     8461 acccctacat cttgacaata cacccaacta atatctccaa ttgcgacagc tctgcctccg
     8521 agaagttcgc tcgcaaacaa aataaatcca aaacagaata ttggaagtag atatatccca
     8581 tgtattctga agaattccga aactcgtttt gcccattgct tttcactata gaatgttgca
     8641 gcgatcatgt ataacaggaa tagttggaaa gacatcgtgt agtacactac acgtgctggc
     8701 tctagcactt tcaagaaact ttcaggccaa gcgtaaaccc agaatagcat agccgttgaa
     8761 catctcaaag cttcagtaaa tagcatcaaa gccataaatc gattttttgc ctttttaggc
     8821 ccggcacgca acacaaggta ggaaaggaaa atgagaaaaa tagcggatag tatactgaaa
     8881 atagcgagta tatgccagta tcccatgaaa gtaccaactc caaaatcaac gtttgaaatt
     8941 gagcgccaat aataggagat aggccctcct acatccgcca tagatatcgg ttggtgaata
     9001 ggtattcaat gactttccct aattttacaa ttaacatact caaaaaatca tgatgatagg
     9061 atattttctc ctgtttgaac agtccacaat cgagagtaaa ggccacctaa atccactaaa
     9121 tcgtcgtgat ttccttcctc gactactgta ccctcatcca tgacgatgat tcgatctgca
     9181 cgacgtactg tagaaagtcg gtgtgcgatg atgagggtcg tccttcctct actgatatga
     9241 tgaatagagc gctgaagagc ggcttcagtt tcgttgtcaa cagctgaagt tgcttcatcg
     9301 aggatcagga agggagcatt cttcagaata gcacgtgcta tggcaactcg ctgacgttga
     9361 ccccctgata gacgatgccc gccttcgcca acgagtgtat cccatctggc aggtaaggca
     9421 tcaatgaact cctcagcttc tgcaatcctc gcagcatcct ctacctctgt atctgtagca
     9481 tctggcctgc catagcgaat attgtcgcga attgttgtgg ggaaaagggt gacatgttgt
     9541 gaaactaggg cgatattacc acgaagactt tccaacgaca aatgtcggat atcctttcca
     9601 gcccaataga ttccaccccc tgagggctcg ttaaaacgta gaagaagacg gacaagagag
     9661 gtctttccac ttcccgtggg acctaccact ccaagtgttg atccggcctc aatctcaaga
     9721 tttagttcat cgaaaagttg agtacgtcca ggatacctaa atgtaagcga ttcaatctgt
     9781 aacgaagaag aagccgcttc atcgagggat atggattcta aaccatcctc gacagaaatt
     9841 ggtgtctcaa gaagatcgag tattcgtgta gtcgaagcca ttgcacgctg atagagatca
     9901 aatgtctcac ctaagcgtgt gagaggccaa agaagacgct gcgtcataaa cacaagaaca
     9961 gagtatgcac ccactgcgag tttatcttca agggtaatcc atccaccgag taacagagtg
    10021 gcagtgaatc caacaaggat tgccatgcgg attagaggga cgaaggctgc agacaatcgt
    10081 attgctcgtc gatttgcttc cttgtattcc tctgagatgc tcttaatccg tgaagcctca
    10141 tgatcctccg cagtaaacga ctgaattgtc gtcatacctg acaagtcatt ctctagaagt
    10201 gcgttaattc gtcctgctgc ggctctaacc tcagcatatc ttggttcaag gctgcgctga
    10261 tagcggaatg aaccccatat gataattgga attggcagaa ctgcaaaaag tgcaacttgc
    10321 caagagattg cgatgaacac tgcaccgact atcaaaacag tcgtggttac ttggaggagg
    10381 tcattcgcac ccttatctag aaaacgctcc aattggttga tgtcatcatt catcactgcc
    10441 atcaagtcgc ctttctgacg ttcatcaaac caccccatac cctgtttcaa gacatgctca
    10501 aaggtattct gccgaaactc atgttgaaca gtctgggcaa gattacgcca caagatacca
    10561 tagaggtatt cgaacacaga ttctaagccc caaattagga acgtcgcgat tgagagtgca
    10621 atcaactgat gccaagggtc gatgagtccc caaccagcaa ggagtgaatc ctctctttcg
    10681 acgacaacat ctactgcgac accgataaga agtggaggcg caagatccca gattttgttc
    10741 aaaattgagc agattgaagc gaggcgaacg gtagtagaat gtggacgaac agccttcaaa
    10801 agacgcagaa acgggctgac tcgttccccc gtcatgaacg ggtgaagata ctctcataca
    10861 aaatcgaacg gttcactcca gcgaccaatc tcgaagaatt tcatcacggt gctcatctag
    10921 agaaggaacc aaaccgttgg cagatgcagg ggtcgcagac atgaagcgaa gggcgtttgc
    10981 aacagaagaa gaaccatctg gaagtttcca aatcgctcca cgtgcattgg cttgaccatc
    11041 ttggaaggct tcc
//
LOCUS       DUKB01000062            3250 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_48182, whole genome shotgun sequence.
ACCESSION   DUKB01000062 DUKB01000000
VERSION     DUKB01000062.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_48182"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            162..617
                     /locus_tag="HA345_02260"
     CDS             162..617
                     /locus_tag="HA345_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84213.1"
                     /translation="MGATSGDRGRYMLLRIVEVAMEDEILTDEESAILDVIASVMGLE
                     PLDVQDSLAIASGSMSSPHNDDDIRAHNRRHLGDMALYQNVLITALDDEVITEDEMAM
                     LDVLRRVLRLQSDEHAMMVEQIRLLASRSEGSERLTERMERYLVLHPFA"
     gene            676..>3250
                     /locus_tag="HA345_02265"
     CDS             676..>3250
                     /locus_tag="HA345_02265"
                     /inference="COORDINATES: protein motif:HMM:NF018449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84214.1"
                     /translation="MRRFAAALLVSLFLAHLISASVLNPDDESNPIPLEETPLVSYAS
                     SSQYLWHQNVGGSNSDNVRGMDVDDQGNIYVCGNYHQIANFGSFSTPSSVSSSSDIFV
                     AKLSSTGDWLWVQTAGSTSSDYCYDIDVDAGGNVSITGVFFNSISFGSTSFSSSGSYD
                     AYVAVLDTMGNWLWAQKIGASSSDYAHGVAIADSGNVYVTGYWSSGTLSFGSAGSLSC
                     SSCYSDAYIASLDSQGNWRWAQGIGGSYYERGRDVAVDAQERVYVTGEFSYQVDFGST
                     SQYNYYSYDYWGFVAQYSSTGVYSWSQKYGYSSYETYPESIDVDDGGNATVCGRFYYY
                     TEFDSNRLNAYGGSGWDMFVAQISPTGNWNWQQQGGGSSTDYCYDVGVEDTTGEIAVT
                     GYYNGAAWFGQYGVNSIGSNDVFMGTLSSNGAWNWVNDYGSTSSDTGYGAAILGDETY
                     FAFNFPTGLTINGYTVPHYGSQDFAIVVHGVDTDGDKVGDRTDRFPFDPTQWSDLDGD
                     GYGDNWADSSLNASRMGGPGVYVDFATTPDHCPVVAGNSTRDVYGCPDLDSDGQSDSN
                     DAFPNNGTQWADNDGDGFGDNPAGEAYDDCPNVWGTSWKDTFGCTDLDADGWSDLADD
                     FFNKPSQWNDTDGDGLGDNWRIDSWNSSRLSHWPGQWIAGAYLADPSPLDRDNDGYED
                     VELDTSSGPFDDCPDQPGDSFRDLYGCVDTDGDGWSDSFDDMPENPNQYADSDGDGYG
                     DAPGFPDSDDCPTRLGTSMIDAIGCPDNDGDGLSNDGDECPTVFADTVNGCPDTDGDG
                     YPDTAESGLIDDCPQDAGTSTIDLIGCPDADGDGWSDTEDVYPDDVTQWSDVDGDGYG
                     DN"
BASE COUNT          749 a          702 c          896 g          903 t
ORIGIN      
        1 cccaatcgcg agtatcaggc ctattctgag ggcgaacccc tcgatgccag gagaccaagg
       61 gcccatgggc tcagagtaaa gcccccctcc ttgaactggt tgtaacctag agaactaaat
      121 tgctgtgaat ggatgatata cggggaccga atcctgtgac tatgggcgca acgagtggag
      181 accgcggacg atacatgctg cttcgcattg tagaggtcgc gatggaagat gagattctca
      241 ctgacgaaga gtctgcaata ttggatgtga tcgcatctgt gatgggacta gagccattgg
      301 atgtccagga ttcgttagca attgctagtg ggtcgatgtc atctcctcat aatgacgatg
      361 atattcgtgc acacaatcgc cgccaccttg gtgatatggc tctgtatcag aatgttctca
      421 ttactgctct cgatgatgag gtcatcactg aagatgagat ggcaatgtta gatgttcttc
      481 gtcgagttct ccgcctccag agtgatgagc acgctatgat ggtggagcaa atccgcctcc
      541 ttgcgtctcg atcagaaggt tctgaacgat tgactgaacg gatggagcgc tatcttgtct
      601 tgcatccgtt tgcttgattt ttagtttcac tcgcatacga atgcactata tctccgaaaa
      661 ggtctcattt gttcgatgag acgcttcgct gctgcacttt tggtttccct gtttctcgcg
      721 cacctgattt ccgcttcagt actgaatcct gatgatgaat cgaatccaat tcctcttgag
      781 gagacaccac tggtctcgta tgccagtagt agtcagtacc tatggcatca gaacgtaggt
      841 ggcagcaact ccgataatgt tcgagggatg gatgtggatg atcaggggaa tatctacgtc
      901 tgtggtaact atcatcaaat cgcaaacttc ggttcgttca gtactccgtc atcagttagt
      961 tcgagttcag atatcttcgt cgcaaagttg tcttcgacag gagattggct ttgggttcaa
     1021 actgctggat ctaccagctc agactattgc tatgacatcg atgtggatgc tggaggtaat
     1081 gtgagtatca cgggcgtttt cttcaactcg atttcgttcg gtagcacctc attctcttcg
     1141 tccggatcct acgatgccta tgttgctgtt ctcgatacca tggggaattg gctctgggca
     1201 cagaagattg gcgcaagtag tagcgattat gctcatggcg tcgcaatcgc agattctggt
     1261 aatgtgtacg tcactggata ttggtcttca gggacactat cctttggttc tgctgggtca
     1321 ttatcttgca gcagttgtta ctcggatgct tacattgcta gcctagactc gcaaggaaat
     1381 tggcgctggg cacaggggat tggagggtct tactacgagc gtggacgcga tgtagcagtg
     1441 gacgctcagg agcgggtcta tgttactggt gagttctcct accaggtgga ttttgggtcg
     1501 actagtcagt acaactatta ttcctatgac tattggggat tcgttgctca atattcttct
     1561 acgggtgtat acagttggtc tcagaagtac ggttacagtt cgtacgagac ttatcccgag
     1621 tcaatcgatg tagacgatgg tggtaatgct acggtctgtg gccgatttta ctactatacc
     1681 gagtttgact ctaatcggct aaacgcctac ggtggcagtg gttgggacat gttcgtagct
     1741 cagatttcac caactggtaa ctggaactgg cagcagcagg gtggagggag cagtacggac
     1801 tactgttacg atgtaggtgt tgaagatacc actggagaga ttgccgttac gggttactac
     1861 aacggcgcag cttggttcgg acaatatggc gtcaattcga ttggaagtaa tgacgtgttt
     1921 atgggtacac tttcatcaaa cggtgcttgg aactgggtca atgactacgg ttcaacatct
     1981 agtgacactg gatatggggc agcgattctt ggagacgaga cctatttcgc attcaacttc
     2041 ccaactggat tgacaattaa cgggtatacg gttccacatt acgggagtca agatttcgct
     2101 attgtcgtgc atggcgtcga taccgatggg gacaaggtgg gcgatcgaac ggatcgtttc
     2161 ccctttgacc caactcagtg gtctgatctc gatggggatg gctatggtga caactgggcg
     2221 gactcatctc ttaatgcaag ccggatgggt ggtccaggcg tctacgtaga tttcgcgacc
     2281 acgcccgatc attgtccagt tgtggctggc aacagcacac gtgacgtata cggttgccct
     2341 gatttggata gcgatgggca atccgattct aatgatgcct tcccgaacaa tggaacccaa
     2401 tgggcagata atgatggtga tggttttgga gacaaccctg ctggtgaggc ttacgacgac
     2461 tgtcctaatg tatggggcac ttcatggaag gatacctttg gttgcacaga tctcgatgca
     2521 gatggttggt cagatcttgc tgatgatttc ttcaataaac catcccagtg gaatgatacc
     2581 gatggggatg gtcttggaga taattggaga atcgattcct ggaactcttc cagattgagt
     2641 cactggcctg gtcaatggat tgcaggagct tatcttgcag atccaagtcc acttgatcgt
     2701 gacaatgacg gatatgagga cgtcgagtta gacacttcaa gcggtccgtt cgacgattgt
     2761 cctgatcagc caggtgactc gttccgagat ctctatgggt gtgttgatac ggatggggat
     2821 ggttggtctg attctttcga cgatatgcca gaaaatccca atcaatatgc tgattccgat
     2881 ggtgatgggt atggtgatgc ccccggtttc cctgattctg atgattgccc aacacgcttg
     2941 ggtacttcca tgatcgatgc aattggctgc cctgacaatg atggtgacgg cctctctaac
     3001 gatggagacg aatgccctac tgtgtttgca gatacggtaa atggttgccc ggatactgat
     3061 ggtgacggtt atccagacac tgcggaatca ggtctcattg atgattgccc tcaggatgca
     3121 gggacctcga caatcgatct catagggtgc cctgatgcgg atggggatgg ttggtcagac
     3181 actgaagatg tctatcctga cgatgtaact cagtggagcg atgttgatgg agatggttat
     3241 ggagataacg
//
LOCUS       DUKB01000063            5826 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_150171, whole genome shotgun sequence.
ACCESSION   DUKB01000063 DUKB01000000
VERSION     DUKB01000063.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5826)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5826)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5826
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_150171"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            65..>645
                     /locus_tag="HA345_02270"
     CDS             65..>645
                     /locus_tag="HA345_02270"
                     /inference="COORDINATES: protein motif:HMM:NF012738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HIH84215.1"
                     /translation="MDPNWGRLANTNNNLVIFFQESLWPPDWSVIEAQAYPPCLAAPG
                     LSFTCSTAWLGMIETLKIAFVATILGMTISFPLSLLASRNLSPNWVSYPARFLLAGSR
                     SLPSIIWALFFVIVIGFGPLSGILAMTVYTIGYLGKLQYETIEGIDRGPLEASKAMGH
                     GWFERSFGVILPESANGLISQVIFMFEYNFRHGT"
     assembly_gap    646..959
                     /estimated_length=314
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <960..1218
                     /locus_tag="HA345_02275"
     CDS             <960..1218
                     /locus_tag="HA345_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84216.1"
                     /translation="EYNFRHGTVIGIVGAGGIGYYINLYLKFLQYDKVIAYLIIIFIV
                     VLILDVVSIYARSLFTEDGDVRRPSWWSILLPPSMLRNKED"
     gene            complement(1271..1462)
                     /locus_tag="HA345_02280"
     CDS             complement(1271..1462)
                     /locus_tag="HA345_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014962828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HIH84217.1"
                     /translation="MAQGTVKWFNQTKGFGFIEQEEGDDLFVHKSQVEGTIRDGDSVE
                     FDVGEGPKGPNAINVRKIE"
     gene            complement(1588..1827)
                     /locus_tag="HA345_02285"
     CDS             complement(1588..1827)
                     /locus_tag="HA345_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84218.1"
                     /translation="MAMADLTKFEMRIFKWICLEDNDFVNNPWSTKKAAKAFKVDEDE
                     VYDALAALTEKIPHHIYVHYKDGGIRIKAEDPEEN"
     gene            complement(1866..2867)
                     /locus_tag="HA345_02290"
     CDS             complement(1866..2867)
                     /locus_tag="HA345_02290"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: protein motif:HMM:NF000942.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HIH84219.1"
                     /translation="MARIGIVGLGNWGTALAKVWGGTGHSVMGWTIEEEVYASITSTG
                     INEKYLPGEVLENVEATMDLATICDASEILVLSLPSGVVLSVLDDVIPHLRPSHAILD
                     LAKGLAPETEEEPFISAVMEKKLAAAKCANPIFVMTGPTIAPEVARGVSTIALIAAHD
                     RTMARRMADRLTTKTLKLHPADDPLGAELWGAFKNPIALACGIVDGLGNSSGDNLKAA
                     LVTAGFQEGQRLLPALGAKPETSSSAAGIGDLYVTSTSPSSRNRTLGEMIGSGLSLEE
                     ALAKMHMVAEGVRAARMFLSRAAMLGISTPFLHALCDLLDGGIEVDEAIDRMIETGN"
     gene            2969..4171
                     /locus_tag="HA345_02295"
     CDS             2969..4171
                     /locus_tag="HA345_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011555709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HIH84220.1"
                     /translation="MARPQRSVLAQHWDLDPDIVFLNHGSFGAAPGAVIEEQRRWQNL
                     MESEPVRFFEEILPSALIDTRHALAQMLACDADDIALVENATSGVNTVLRSLHFAPGD
                     EILVPDHAYQACRNAIDFVASRWGASVVTVRIPFPIEGPEVVIDQMLAAVTDRTVLAM
                     IDTVTSPTGLRMPFEDLTSALEGRGVQVLLDAAHGIGMLPLSLGELGASYVTSNAHKW
                     LCAPKGAAFLYVRKDRQKDIHPLTISHGMTFPLGDTTRFRHEFDWTGTRDPTAWCVLP
                     FVIDYIAGFVDGGWPEIMKRNRSLALEARNLLCQRLEMVVPCPDEMIATIATMVLPAG
                     GSGGIPLHEPDPLHARLLERGIQIPVWSWPSPAGRYFRISAHLHNHLDEYSHLADVLQ
                     DELSLGSF"
     gene            4213..4297
                     /locus_tag="HA345_02300"
     tRNA            4213..4297
                     /locus_tag="HA345_02300"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4247..4249,aa:Leu,seq:tag)
     gene            4346..4870
                     /locus_tag="HA345_02305"
     CDS             4346..4870
                     /locus_tag="HA345_02305"
                     /inference="COORDINATES: protein motif:HMM:NF015648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HIH84221.1"
                     /translation="MAEGYADSGHIVSVEFDPKVRVYWWLGTMFGLVVTFIGIPVAFL
                     WLIIGLPIHQKQFQGLACSLTDRSLNIRMGWLFKKQQNIPLDKLTDVSIHEGPILNAF
                     GVVRMHFETAGSAPFILTGVRGGPQFRDLILKQRDSMSSQSMMPVQNSQSDEVLVEIR
                     DLLKEINANLANNQ"
     gene            complement(4871..>5130)
                     /locus_tag="HA345_02310"
     CDS             complement(4871..>5130)
                     /locus_tag="HA345_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HIH84222.1"
                     /translation="LNILMLGIGWKSATILDLENNQATTVSIESGIQNATVGITIGSI
                     ILAPEAGATLSVLSLPSGVYGVLMYIVIAPFLYWRINASRV"
     assembly_gap    5131..5443
                     /estimated_length=313
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<5444..>5826)
                     /locus_tag="HA345_02315"
     CDS             complement(<5444..>5826)
                     /locus_tag="HA345_02315"
                     /inference="COORDINATES: protein motif:HMM:NF013885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HIH84223.1"
                     /translation="LTKLSGGDTALSISYTAVVSVVSVVTLPLIVGFSMDYFMGAASP
                     DIEILELGITMFLLTSVPVIIGMIIRRYSESTATRIESLVGKIAAGLFVIIVIAAIAS
                     EFDTLMDNIGTLGPAVLVLNILMLG"
BASE COUNT         1255 a         1255 c         1228 g         1461 t
ORIGIN      
        1 ctcttctcgt tggtttctcc tgtttatcgg cttgttagtt gtagcttttc gagtaacaaa
       61 cagcatggat cccaactggg ggcgattagc gaatacgaat aacaatctgg tcatattctt
      121 ccaagaatcc ctgtggcctc ctgactggag tgttattgag gcacaagcat accccccttg
      181 tttggcggct ccaggactat ctttcacctg ctcaacagca tggctgggta tgatcgagac
      241 tctcaaaatt gcattcgttg caactattct aggtatgact atatcgttcc cactgtcatt
      301 gctcgcttcc cgtaatctta gccctaattg ggttagttat cctgctcgct tcttactcgc
      361 agggtcccga agtttgccaa gtatcatttg ggctcttttc ttcgttatcg tgataggttt
      421 cgggccatta tccggaatat tagctatgac tgtctatacg attgggtatc tcggtaaact
      481 acagtacgaa accatcgaag gtatcgatcg cggacctttg gaagcatcca aggcgatggg
      541 acatggatgg ttcgagcgtt cttttggtgt aattctccct gagtccgcca atggtctaat
      601 ctcgcaagtg atcttcatgt ttgaatacaa tttcagacat ggaacnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt
      961 gaatacaatt tcagacatgg aactgtgatt ggaatcgttg gtgcaggtgg aatcggatat
     1021 tacatcaatc tctatctcaa attcctacaa tatgacaagg taatcgctta cctgattatt
     1081 atcttcattg tagtattaat tctagatgtg gtctccattt atgctcggtc tttgtttacc
     1141 gaggatggcg atgtaaggcg cccatcttgg tggtcaattt tgcttcctcc ttctatgctg
     1201 aggaataaag aggattgagg cagatctaga gttgccacta acctctcttc tgaaattaca
     1261 aaaatcgggt tcactcaatc tttcggacgt tgattgcgtt cggtccctta gggccttcgc
     1321 cgacatcgaa ttctactgag tcaccgtctc tgatagttcc ctcgacttgg ctcttgtgga
     1381 cgaatagatc gtctccttcc tcttgttcga tgaaaccgaa cccctttgtc tgattgaacc
     1441 actttactgt tccttgtgcc atagttcgtt tgcgctccga cataatactt gaacaggact
     1501 ggagaaatta cacgattaac cccgaaagta atcaattctc aatgatgcgg agtattgatt
     1561 tctcaagccg agaataccaa ttctcatcta attctcttca ggatcttctg ctttgattcg
     1621 tatgccaccg tccttgtagt ggacatagat gtggtgtggg atcttctcag taagagcagc
     1681 cagtgcatcg tacacttcat cctcatcaac tttgaatgcc ttggcagcct tcttagtaga
     1741 ccatggattg ttgacgaagt cgttgtcctc caagcaaatc cacttgaaaa ttcgcatttc
     1801 gaacttggtc aagtccgcca tcgccatgta gacgggatga cggcctcatg catgaacatc
     1861 gcggcttaat tcccagtttc gatcatccga tcgattgctt cgtcaacttc gattcctcca
     1921 tcgagaaggt cgcacaatgc atgaaggaat ggagttgaaa ttccgagcat agcggctcta
     1981 gacaggaaca ttcgggcagc acgtacacct tcagcaacca tgtgcatctt cgcaagggcc
     2041 tcttcaagac tgagtcccga gccaatcatc tcacctaggg tgcgattacg gctactcggg
     2101 cttgtggaag taacatagag gtctccgata cctgccgctg aactagatgt ctctggtttc
     2161 gcacctagtg ccggaagaag acgctgtcct tcttggaaac cagcggttac taatgccgct
     2221 ttgaggttgt caccagagga atttcccagc ccgtcgacta tcccacaagc aagtgctatc
     2281 ggattcttga atgcgcccca gagttcggca cccaaggggt catctgcagg atgtaacttg
     2341 agtgtcttcg ttgtaagacg gtcagccatt ctgcgggcca ttgttctgtc atgggctgcg
     2401 attagagcga tggtacttac tccgcgagcc acctctggag caattgttgg cccagtcatc
     2461 acaaagatgg ggttggcgca ctttgctgct gccagtttct tttccatcac cgcactgatg
     2521 aatggctcct cctcagtttc aggagctagt cccttcgcta aatcgagtat ggcatgtgag
     2581 ggcctcagat gcggaattac atcatcaagg acacttagga caactcctga ggggagagag
     2641 agtacgagaa tttcggatgc atcacaaatt gtggcgagat ccattgtagc ctccacattt
     2701 tcaaggactt ctcctgggag gtatttctcg ttaattccag tcgatgtaat cgaggcatag
     2761 acctcctctt ctatggtcca acccattact gaatggccag tgccgcccca taccttggcg
     2821 agtgcggtgc cccagttccc cagaccgacg atgcctatgc gcgccatcga gcaggtccgg
     2881 tttcaggggg tcttgaccgt tggggatgga gtcggggtca gggggccaat tccggcagga
     2941 ctgtaagggc acggtgagaa acagtatcat ggcgcgccct caacgaagtg tgctcgctca
     3001 acattgggat cttgacccag atatcgtctt tctcaatcac ggttcttttg gtgcagctcc
     3061 cggggcagtc attgaggaac agcgtcgttg gcagaatctg atggaatctg aaccggtccg
     3121 cttctttgaa gagattctac catcggctct gattgataca cgccatgcac ttgctcagat
     3181 gttagcttgt gatgccgatg atatcgcctt agtcgaaaat gcgacaagtg gtgtcaacac
     3241 agtacttcga tcccttcact tcgctccagg cgatgagatt ctcgttccgg atcatgccta
     3301 ccaggcatgc cgtaacgcta tcgactttgt tgcatctcga tggggtgcat ctgtcgttac
     3361 cgtacggata cctttcccta tagagggccc tgaggttgtg atagatcaga tgttagccgc
     3421 tgtaactgat cgcacggtcc ttgcaatgat tgacacagtt acgagcccaa cgggacttcg
     3481 gatgccgttc gaggatctga cgtcagcttt ggaaggtcgt ggagtgcagg tcctcttgga
     3541 cgcggctcat ggcatcggca tgctccccct ttctcttgga gaactcggtg cttcgtatgt
     3601 tacgagtaat gcacacaagt ggctatgcgc accaaagggc gctgcattcc tgtatgtgcg
     3661 aaaggaccga caaaaggaca tccatccttt gacgattagt catggtatga ccttcccact
     3721 tggagataca actcgctttc ggcatgagtt tgattggacc ggaacacgtg atccaacagc
     3781 ttggtgcgtg cttccattcg ttatcgatta tattgcaggt tttgtcgatg gtggttggcc
     3841 tgagataatg aaacgcaacc gttcactcgc gctcgaggca agaaatctgt tatgtcaacg
     3901 tctagaaatg gtagttcctt gcccagatga gatgattgcg accattgcga caatggtcct
     3961 tcctgcggga gggtcaggtg ggattccatt gcatgaaccc gatccattac atgcacgttt
     4021 acttgagcgt gggatccaga ttccggtttg gtcctggccg tctcctgctg gtagatattt
     4081 cagaatatct gcgcatcttc acaaccatct cgatgagtat tcgcaccttg ctgatgtgct
     4141 acaagatgag ttatctttgg gttctttttg atgcgttgca ttgaagcata tgagccccgc
     4201 ctcaagggtc aagcaggggt acccgagtgg tcaaaggggt tgggtttagg tcccaatgcg
     4261 tagtgcttcg caggttcgaa tcctgtcccc tgcaccaacc atattttcag aacattatat
     4321 ctgatacctc cctcgatgca ttcgcatggc agaaggatat gctgacagtg gtcacatcgt
     4381 ttcggtagaa tttgatccca aggtgagagt ttactggtgg ctaggaacta tgtttggttt
     4441 ggtagtgaca ttcatcggaa taccagttgc atttctttgg ttgataattg ggctgccaat
     4501 tcatcaaaaa caattccaag gtttggcttg ctccttaacc gatcgttcac tgaacatacg
     4561 tatgggatgg ttgttcaaga aacagcaaaa cataccattg gacaaactaa ctgatgtatc
     4621 cattcatgaa ggtccaatcc tgaatgcatt tggagtggtc agaatgcatt ttgaaactgc
     4681 aggttcggca ccatttatcc ttacaggagt aagaggaggc ccccaattta gagaccttat
     4741 cctcaaacaa cgtgatagca tgtcctctca atcaatgatg cctgtacaaa attcacaatc
     4801 ggatgaggtt ctagtggaaa ttagagattt actcaaagag ataaatgcaa accttgcgaa
     4861 taatcagtaa tcataccctt gatgcattta tcctccaata gaggaatggc gcaatcacga
     4921 tgtacatcag aacaccatat actcctgatg gaaggctcaa aacagagaga gttgcccccg
     4981 cttcgggagc taatatgatg ctcccgatgg taatccctac agttgcattc tgtatgccgc
     5041 tctctatcga aacagtcgtc gcttgattgt tttcaaggtc tagaatcgtt gcactcttcc
     5101 aacctattcc aagcatcaga atattgagta nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnttccaag catcagaata
     5461 ttgagtacga gaaccgctgg ccccagagtc ccgatattat ccatcaacgt gtcaaattca
     5521 ctcgcaatgg ctgcaatgac gattatcacg aagagtcctg ctgcgatttt tccgactaat
     5581 gactcaatac gagtcgccgt tgattctgaa tatcggcgaa ttatcatacc aattatcacg
     5641 ggcacgctcg ttagaagaaa catggttatg ccgagttcta gaatctcaat atcaggcgat
     5701 gcagcaccca tgaaataatc cattgagaac cccacgatta gcggaagtgt gactactgat
     5761 accacactta caactgcggt gtaagaaatt gatagagctg tatcccctcc tgacaatttc
     5821 gtcaga
//
LOCUS       DUKB01000064            3700 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_204854, whole genome shotgun sequence.
ACCESSION   DUKB01000064 DUKB01000000
VERSION     DUKB01000064.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3700)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3700)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3700
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_204854"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="HA345_02320"
     CDS             complement(<1..280)
                     /locus_tag="HA345_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HIH84224.1"
                     /translation="MFSESQALQLLQDSVVSAPVVWKGDYPYFIHPLTDGVPRQTSEL
                     LCATRDLLLHRVDWENVDLILSVEAMGLPLASVLSVSTGIPTVVARKRS"
     gene            complement(319..>855)
                     /locus_tag="HA345_02325"
     CDS             complement(319..>855)
                     /locus_tag="HA345_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014404681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HIH84225.1"
                     /translation="ARKPAKMYRRLSGQAFTRRKYTGGVPNNRILRFHMGNRPRAEAG
                     DFPVILHLTADNSCQIRHTALEAGRMISNSTIRTNAGEEGYALRVHTYPHHILRENKQ
                     ATGAGADRVSQGMRQSFGKNVGTAARVKRDQCVISIQTDPENYLAARDALRKAGMKLP
                     TSTTIRLKQGAEHLKGLV"
     assembly_gap    856..1158
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            1327..2490
                     /locus_tag="HA345_02330"
     CDS             1327..2490
                     /locus_tag="HA345_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84226.1"
                     /translation="MAGGIDRTPTSAEADTIQWMPIAAFIGILLIGAGVIQSANGMPT
                     EAAIDLFPDDVEVIDIAYSESVGAAIVSDNGVKTLHTFEGDAPSPVPLESSPNSISSS
                     PTGWFIGGDEGMLAHLMGETVTELDVLESTDTVIDAVAVDNRSGWVIIERDSEIQLRT
                     FDLDRTPNSLSLASTLPSDDIDLAGIEVDSTGTIALVRATSSAFSNPISSTSSGEVLL
                     MASASLGSQPDVTLIQHGGGHPYHTLIISEHDDVLGYAVSSDSAVVISDTGVVRSISG
                     LEGGIAAALDSDCRLWILHEEQSISTYDMTNGVDSMWINSPTGENPRMVSSDSGLLRI
                     VYDDSSALTLDTDDYTDPLARPGLLFDSAFLTIVLGTIMILGRNFYVMGFDAW"
     gene            2568..>3700
                     /locus_tag="HA345_02335"
     CDS             2568..>3700
                     /locus_tag="HA345_02335"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013765.1,HMM:NF017039.1,HMM:NF017043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HIH84227.1"
                     /translation="MASKGPGMLDQYREIKEQHPDTVLFFRMGDFYEMFYEDAVIGAE
                     TLGITLTSRDKNSENPVPMAGIPWHSVEDYLRKMVKAGHKVTLCEQAPEPLPGEKILR
                     RVVTRVYTPGSLYEDSLIGEDGSALLAAISLKTDGIGLAILDTSIGRAWVQQFSAPAG
                     FERLRDELLRWGPSELVCTQRDAKVEELRTVISEVEGVSISTFESTSKKSIEAVRQHL
                     EMNDLGSIDLDSMPIGLEACGLGASYVRSLHLIDAVPLREITIEEEASHMALDQTTLR
                     NLELTQTLIGERNGSLIHAIDRTRTWMGRRMLKEWILRPLLDREAIGSRHAAIAALIK
                     APRRLSSIRECLKSMRDLERLSQRLAYDRANARDLIAITDALAR"
BASE COUNT          856 a          855 c          871 g          815 t
ORIGIN      
        1 aagatctctt gcgcgctact actgtgggga ttcctgtaga aactgaaaga actgaagcga
       61 gagggagacc cattgcctca actgaaagaa taagatcgac attttcccaa tccacccgat
      121 ggagaagaag atcacgagtg gcacacaaga gttcgcttgt ttggcgtgga actccgtctg
      181 tgagagggtg aataaagtat ggatagtcac ccttccatac aactggggct gagacaacgc
      241 tgtcttggag caactgtagt gcctgcgatt cagagaacat taaccctcac agaggcctaa
      301 gggtcttgaa gagaccgttc aaaccaatcc cttgagatgt tccgctccct gcttgagacg
      361 gattgtggta gaagtcggga gtttcatgcc agcctttctg agagcatcac gagctgccag
      421 ataattttca ggatcagtct ggatggagat gacacattga tcacgcttga cacgagcagc
      481 tgtacctacg ttcttaccga aggactgacg cattccctga gatacacggt ctgcacccgc
      541 gcctgttgcc tgcttattct cacgtaaaat gtgatgagga taagtgtgga cgcggagagc
      601 gtacccctcc tcgcccgcat ttgtccgaat cgtagaatta gatatcatgc gaccggcttc
      661 aagggcggta tgcctaatct gacacgaatt gtctgcagta agatgtagaa tgactgggaa
      721 atctccagcc tctgcacgag gcctgttacc catatggaag cggagaatac ggttgtttgg
      781 cacaccaccg gtgtacttgc ggcgagtgaa agcctgtcca ctaagacggc ggtacatctt
      841 tgccggtttg cgtgcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1141 nnnnnnnnnn nnnnnnnngt acatctttgc cggtttgcgt gccatgctat tcctcccggg
     1201 ttcgggcgac ctgcacagcg tatataatcc caactccgtg aaacgtacta ctccaggtgg
     1261 agaaaccaag cctctgcatt actgtgaagg ctatgcttca aggaccgttc gtcccggttg
     1321 tggcccgtgg caggcggcat cgatcgaact ccaacctccg cggaggccga cactatccag
     1381 tggatgccta tcgccgcatt cataggcatc ctactaatcg gagcaggagt aattcaatct
     1441 gcgaatggta tgccaaccga agccgcgatt gacctttttc ccgatgatgt cgaagtcatt
     1501 gacatcgcat attcagaatc tgtgggtgca gcgattgtca gtgataatgg agtaaagaca
     1561 ctccatacct tcgaaggcga tgccccctct ccagtcccgt tggaaagttc accgaactca
     1621 atatcatcca gccccacagg gtggttcatc ggtggtgacg agggtatgct cgcccacctc
     1681 atgggtgaaa cagtaaccga gcttgacgta cttgaatcga cagacactgt catcgatgct
     1741 gtagcagtgg ataaccgaag cggatgggta attatcgaac gagattcaga gattcaactc
     1801 cgaactttcg accttgatcg cacccctaac tcactcagtc tcgcatcgac tctcccaagt
     1861 gatgatatcg acctcgcggg tatcgaagta gattcgaccg ggacaatagc tctggttcgg
     1921 gcgactagta gtgcattcag caacccaata tcatccacct caagtggaga agtcctcctt
     1981 atggcatccg catccttggg atctcagcca gatgtgacac tgattcaaca tggaggcggc
     2041 catccttatc atactctgat aatctcagaa catgatgatg ttcttggcta cgccgtatcg
     2101 tcggattcgg cagtagtaat ctccgacaca ggtgttgtgc gttccatctc aggcctagaa
     2161 gggggcatcg cggcggcgtt ggattccgac tgtcgcttgt ggattctcca tgaagaacag
     2221 tcgatttcaa cctatgacat gacgaatggg gtcgactcaa tgtggattaa ttcaccaacg
     2281 ggagaaaacc ctagaatggt atcctccgac tcggggctac ttcgaatcgt ctatgatgat
     2341 tcatccgcct tgactcttga tacagacgac tacactgacc ctctagcacg accggggctt
     2401 ctctttgatt ccgccttcct gacgattgtt ctgggaacca tcatgattct tggaaggaac
     2461 ttctacgtga tgggctttga tgcttggtga ttccaaaact catcgcgttg tttatcatgc
     2521 gtaggctcag tactccttga gccgctctgc ggtaggggag tgaatgaatg gcgtccaagg
     2581 gccctggaat gttggatcaa tatcgggaaa tcaaggaaca gcaccccgat acggtcctct
     2641 tcttccgaat gggagacttc tatgagatgt tctacgagga cgcagtcatc ggagccgaga
     2701 cactcggcat cacactcact agcagagaca aaaattcaga aaaccctgtt ccgatggcag
     2761 gcatcccctg gcatagtgtt gaagattatc tccggaaaat ggtcaaagca ggacacaagg
     2821 tcacgctctg tgaacaggct cctgaacccc tcccgggtga gaaaattctg cgtcgtgtag
     2881 tgactcgagt atacacacca ggatcgcttt acgaagattc gctaattggc gaggatgggt
     2941 cggcattact tgcggcaatc tcgttgaaaa cggatggaat cggtcttgcc attcttgaca
     3001 cctccatagg acgagcttgg gtgcagcaat tcagtgcacc cgctggattc gaacgtttac
     3061 gagatgaatt actccgatgg gggccatctg aattggtctg cacacagcgg gatgccaaag
     3121 tggaagagct ccgaaccgtg atttctgaag tagaaggagt atcaatctcg acattcgaat
     3181 cgaccagtaa gaagagtatc gaggcggttc gccagcatct tgagatgaac gatttaggtt
     3241 caatcgatct tgattccatg cccattggcc tagaagcatg tggacttggc gcttcctacg
     3301 ttcggtcact gcacctcata gatgcagttc cattacgtga aatcacaatt gaggaagagg
     3361 catcacatat ggctctcgat cagaccacgc taaggaatct cgaactcaca cagacgctca
     3421 ttggtgaacg taatggatca ctcattcacg ctatcgatag gactcgaacg tggatggggc
     3481 ggcgtatgct caaggaatgg atactacgac cattgttgga ccgagaggcc attggttcac
     3541 gtcacgcagc gattgcagca ctaatcaaag caccaagacg gctgagcagt attcgcgagt
     3601 gtctcaaatc catgcgtgat cttgagcgat tatctcagag attagcatac gatcgggcaa
     3661 atgctcgaga cctaatagcc atcactgatg ctctagcacg
//
LOCUS       DUKB01000065            2822 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_324430, whole genome shotgun sequence.
ACCESSION   DUKB01000065 DUKB01000000
VERSION     DUKB01000065.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_324430"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1149)
                     /locus_tag="HA345_02340"
     CDS             complement(<1..1149)
                     /locus_tag="HA345_02340"
                     /inference="COORDINATES: protein motif:HMM:NF016289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HIH84228.1"
                     /translation="MRTALDMQTLEASKGLFLVLVMLLASLSGCFGEEASEDQPVVSS
                     IFQIDYTSPEDAVLRAGEWHEFILEGNGRSLSVPTGIMLFVNNTILPNGYVTVAGDQI
                     NGKFLLTPYVEEATLTIVHPDGTGEVLEMPITNGTPIVNGEEWLDKMKFITSVCTDST
                     ECGGYINRWMGTPNPAFERAASFFQGHFEGLGYETHILRVTDHGNPTEPESLNVIAWK
                     EGRDDSCVQGMGAHMDIAPPGGPPGGGTYEGAYDNTGGTVSMMLFAKAFVEIEVQCDT
                     FLALWSSEEEGLRGSSAFANNECDYCLPTDKELRFYINMDMMGISYPAIKPTGEPYPY
                     HAWSGPDIDPEVQDVEITTILDHVHRDILGAPMDMRIEGSYGAGCDQHW"
     gene            complement(1174..1248)
                     /locus_tag="HA345_02345"
     tRNA            complement(1174..1248)
                     /locus_tag="HA345_02345"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1213..1215),aa:Gly,seq:tcc)
     gene            complement(1305..>2822)
                     /locus_tag="HA345_02350"
     CDS             complement(1305..>2822)
                     /locus_tag="HA345_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84229.1"
                     /translation="GDNATGPQPDACPGVPGTSTIDRYGCVDSDGDGISDDNDAFPAD
                     PGRSSDVDEDGYDDLEDGCMLIAGNSTIDRFGCIDSDGDGYSDGDAQWNTSNGSDAFP
                     FEATQNADQDNDGFGDNPSGVEADDCPTTQGSSFRDSFGCVDEDNDGMSDVNDDFLAE
                     SSQWTDSDSDGYGDEINGTQGDFCPLESGTSTNDVYGCVDTDSDGYSDLNDVWPNDAT
                     QWYDDDMDGFGDEDSGTVPDQCPDEYGTASLGTLQGCPDTDGDGYADLEDAFPLHDSQ
                     HLDSDGDGWGDNETSGAHKPDHWPSDPTRNAGEATLECLPDRISIDSVTGADFQFTCT
                     VTTSMSDGFTARIDWQSSTNVYAETNSKLMVFNTGSKPFEQRFFSGQALSEGSFTLVL
                     TVTEPGAEIPMDTASIRLNVYNSSVSSGGEDEFTWDTILDSTIFQISAAMIVFVFLFG
                     MLIIRGKARRIKDEEDRKVQAAQVLYNRMMSDQDVVQRRRVELGYNAVPLPPEMK"
BASE COUNT          740 a          698 c          608 g          776 t
ORIGIN      
        1 ccaatgttgg tcacaaccag caccatatga accttcgatt cgcatgtcca taggcgctcc
       61 aaggatatct ctgtgaacat ggtctagaat agtggtaatc tcaacatctt ggacttctgg
      121 atcaatatct ggcccagacc atgcatggta tggatacggc tctccagtcg gctttattgc
      181 aggataggag atacccatca tatccatgtt aatgtagaag cggagttcct tgtctgtggg
      241 caaacagtaa tcacattcgt tgttagcaaa ggcacttgat ccacgtagtc cttcttcttc
      301 tgatgaccaa agggctagga aagtatcgca ctgaacttca atctcaacaa atgcttttgc
      361 gaagagcatc atgctgaccg tccctccagt gttatcgtat gcaccttcat aggtaccgcc
      421 tcctggaggg cctcctggtg gtgcaatatc catgtgtgct cccattcctt ggacacaaga
      481 atcatcgcga ccttctttcc aagcaatgac attcaaactt tcaggttcgg ttggatttcc
      541 atgatctgtt acacgcagga tgtgagtttc atacccaagt ccttcaaagt gaccttggaa
      601 gaaagatgcc gctcgctcga atgcaggatt tggagtcccc atccatcgat tgatgtatcc
      661 tccacattcc gtcgagtccg tacaaacgct tgtaataaat ttcatcttgt caagccattc
      721 ttcaccgttt acaatcggtg ttccatttgt gatgggcatc tcgagtactt caccagtgcc
      781 atctgggtgt acaatagtga gcgtagcctc ttcgacgtaa ggtgtgagga ggaattttcc
      841 gttgatttga tcaccggcta cagtcacgta tccatttgga aggatggtat tgttaacgaa
      901 gagcatgatt ccagttggga cagaaagcga gcgaccgttt ccttcgagaa tgaattcatg
      961 ccattcccca gctcgaagca ctgcatcttc cggagatgtg taatcgattt ggaaaattga
     1021 tgaaacaaca ggttggtctt cactggcttc ttcaccaaaa catcctgaca atgatgcaag
     1081 gagcattact aagacgagaa agaggccttt ggacgcttct agggtctgca tatcaagcgc
     1141 tgttcgcaaa cccctcatat gctttgtcaa tagtggtgcg gatagcggga gtcgaaccca
     1201 cgacataagg ttggaaacct cagatgataa ccacttcacc atatccgcac tgtggtagtc
     1261 cttgcgaaca atccctcctc tttgagcgca tcggtcaaat cggttcactt catttcaggt
     1321 ggaagcggta ctgcattgta tcccaattca actcttctcc tctgaacaac gtcttggtct
     1381 gacatcatac gattgtacaa tacttgagca gcttggactt tacggtcctc ttcatccttg
     1441 attcgtcgag cttttccacg aataatcaac attccaaaga ggaatacaaa gacgatcatt
     1501 gcagcagaga tctggaaaat agtggaatcc agaatagtgt cccatgtgaa ttcgtcttcc
     1561 ccaccagaag aaacagaact attgtacacg ttcagtcgta ttgaggcagt atccattgga
     1621 atctcagcac ctggttctgt aactgttaga acgagggtaa acgacccttc agagagtgct
     1681 tgaccactga aaaacctctg ttcgaacggc tttgaacccg tattgaaaac catcaattta
     1741 gaatttgttt cagcatacac attcgtagag gattgccaat caattcgtgc tgtaaatccg
     1801 tcactcatcg aggtggtgac ggtacaggtg aattggaaat cggctcctgt cactgaatcg
     1861 atagagattc gatctggtaa acattcgagt gttgcttctc cagcgtttcg agtagggtca
     1921 ctgggccaat ggtcaggctt gtgtgcgcca gatgtttcgt tatcacccca accatcacca
     1981 tcgctgtcaa gatgctgaga atcatgcaat ggaaatgcgt cttctaaatc ggcataacca
     2041 tcaccatcgg tgtcagggca tccttgtaag gttccaagag aggcagtacc atattcatct
     2101 ggacattggt ctggaaccgt acctgaatct tcatcaccaa acccatccat atcgtcatcg
     2161 taccattgag tagcatcatt tggccaaaca tcgttgagat cggaataacc atctgaatct
     2221 gtatcaacac aaccgtagac atcgtttgtt gaggttcctg attccaaagg acagaaatct
     2281 ccttgcgtcc cgtttatttc gtcaccatat ccgtcggagt cagaatcagt ccactgcgat
     2341 gattcggcta ggaagtcgtc attcacgtcg gacataccat cattatcttc atcaacacaa
     2401 ccaaatgaat ctctaaacga actaccttgt gttgttggac aatcatctgc ttcaactcca
     2461 cttgggttgt ctccgaatcc atcgttgtct tgatcagcgt tctgcgttgc ttcaaatggg
     2521 aacgcatctg aaccatttga agtgttccac tgcgcatcac catcagagta gccgtcacca
     2581 tctgaatcaa tgcaaccaaa tctgtcgatg gtggaatttc cagctatcag catacaacca
     2641 tcttcgagat catcatagcc atcttcatcg acatcagatg agcgacctgg atctgctggg
     2701 aatgcatcgt tatcatcaga gatcccatca ccatctgaat caacacatcc atagcgatcg
     2761 atggtcgatg taccgggtac tccagggcaa gcatcgggtt gtggtcctgt tgcattgtct
     2821 cc
//
LOCUS       DUKB01000066            2809 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_170466, whole genome shotgun sequence.
ACCESSION   DUKB01000066 DUKB01000000
VERSION     DUKB01000066.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_170466"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..727
                     /locus_tag="HA345_02355"
     CDS             <1..727
                     /locus_tag="HA345_02355"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012790.1,HMM:NF013094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoeB"
                     /protein_id="HIH84230.1"
                     /translation="LIDDACAIANIPWVHASLFRYEGQVTVFNHENGPRYRDLHPDPP
                     PSGALLNCEEAGVIGALPGILGSIQAMEAIKILSGIGEPLSGRLMLIDTKTMEARHLT
                     YEASTTRQEVTELNRHNDYAESRCVTDGGMPMNSMTVTELHDLMQQEKPPFLLDVRRA
                     QEEDICSIPDTDLRVRHTDILMHIDEIPSDRVVVVYCRSGIRSMTAIHALAASGRDPE
                     LLHNLAGGILAWSAEIDPTMPRY"
     gene            793..1770
                     /locus_tag="HA345_02360"
     CDS             793..1770
                     /locus_tag="HA345_02360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HIH84231.1"
                     /translation="MPSVLIADEQDGRRSLLASSIERHGFNVTRISTLRQCEGTALAT
                     MPDVVLVDAIWTTGDALGSCSRMTSDPEFALKSRIVLLSNQSDEDHLIAATQAGISEV
                     IQKPVDMNLLVTQLNKHATKAFVPPPAEIKSKGKSTGVFEVNVTADEPGWALPILKEV
                     LDDATIDEEFVLKILDDLDLDGDDVEPDRVREILRAAFDRLIVGTDEDMSDTEDEEAE
                     VRSARVSSKMIEAMEKRAKELEEEIAISLERLMVMPDEVAIITDETEYEKVDPNALNM
                     TRLSLEMFEELLFELGLPGRIEDTTLLTQVQDAAQMASDALDALGRNKD"
     gene            1821..>2809
                     /locus_tag="HA345_02365"
     CDS             1821..>2809
                     /locus_tag="HA345_02365"
                     /inference="COORDINATES: protein motif:HMM:NF012880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84232.1"
                     /translation="MQGELNPVPGAEWRPRRHLDFHRSISSQNVRDNLLRFIAERHDG
                     HLRLVAHLWDEAYPDPIRWDGAAFHSTMEEFTDSLESNLDTRRTEPQLTSVLDREIIP
                     RRLGHLHLSRRLQRFMIDVRLHLRRIAYTASIDVDLRMDWQRWMHRTRLLDEHLKDLF
                     ANGIETPDGGKFGGKGFRSTWQEGVVACASALRRAMDLPPEERNRADVVAPMIRDVGL
                     ALSMGQTSLEIFAAQVGKSGSYMDGGHPGAGGRDLHIGEWNKRVLPPTAPLPIASATL
                     TGVALAAARLDARRFHLAPVGEGCSSSGEFWEAMNFAGARSLPIGFMIQNNQIA"
BASE COUNT          730 a          725 c          718 g          636 t
ORIGIN      
        1 cctaattgac gatgcttgcg ccatagcaaa tatcccatgg gttcatgcaa gcctgttccg
       61 ctatgaggga caagtcactg ttttcaatca cgagaacggg ccccggtatc gtgatctaca
      121 tccagacccc cctccgtcag gcgctctact caactgcgaa gaagccggtg taatcggagc
      181 ccttccaggc atcctcggat caatccaagc gatggaggca atcaaaattc tcagtggtat
      241 cggcgaacca ctctcaggcc gtctcatgtt gattgacacg aaaacgatgg aagcgcgaca
      301 cttgacctat gaagcctcaa ctactcgtca agaggtaact gaattgaatc gtcacaacga
      361 ttatgcagaa tcgagatgcg tcacagatgg agggatgccg atgaactcga tgactgtgac
      421 tgaactgcac gacctgatgc agcaggagaa accaccattc ttgttggacg tgcgcagggc
      481 ccaagaggaa gatatctgtt ctattccaga taccgatctt cgagttaggc atacggacat
      541 cctaatgcac atcgatgaaa tcccctcaga tcgtgttgtt gtcgtctact gccgcagtgg
      601 aatacgcagc atgactgcca tccatgcgct cgctgcaagt ggcagagacc cggaactact
      661 ccacaacctt gctggtggca tcctcgcatg gtcggcagaa attgacccca cgatgccaag
      721 atactgagca attccattca ggagtccgct taggaatgca agattcaagt taggcaagat
      781 ggacatcggc ccatgccatc cgttctcatc gcggacgaac aggatggccg gagaagccta
      841 ttggcatcca gtattgaacg gcatggattc aatgtaacac ggattagcac cctccgtcaa
      901 tgcgaaggta cagcactagc tacgatgccc gatgtagtac tggtggatgc catctggact
      961 accggggatg ccctcggatc ttgctctagg atgacctccg acccggagtt cgcactaaag
     1021 tctagaatcg tcctcctctc aaaccaaagc gacgaagatc atctaattgc agcgacacaa
     1081 gcaggaatct ctgaagttat ccaaaaacca gtggatatga atctcctcgt tactcaactg
     1141 aacaagcatg caaccaaggc ctttgtcccc cctccagctg agattaaatc aaagggtaaa
     1201 agcacaggtg tcttcgaagt taatgtcact gcagacgaac cgggatgggc gttacctatc
     1261 ctcaaggaag tccttgacga tgccacaatc gacgaggaat ttgttctcaa aatactcgat
     1321 gatcttgact tagatggaga cgacgtggaa cccgatcgtg tccgcgaaat ccttcgtgct
     1381 gccttcgatc ggcttatcgt tggtacagat gaggatatgt ccgacactga ggatgaagaa
     1441 gccgaggtcc gaagtgctcg tgttagcagc aagatgattg aagcgatgga aaagcgtgca
     1501 aaggagcttg aagaagaaat cgcaatctca ctcgaacgtc tcatggttat gccagatgaa
     1561 gtagccatca ttacggacga aacagagtat gagaaggttg accctaatgc cctcaacatg
     1621 acaagattaa gcctagaaat gttcgaagaa ctgctgttcg aacttggcct acctggtcgg
     1681 attgaggaca caacactcct aacccaggtc caagacgcgg cacaaatggc atctgatgcc
     1741 ttggatgctc tcggccgcaa caaggattga ggccgaatcg tttgaatgtc ggcttcctct
     1801 ggtaagtttg aggaatcgga atgcaaggcg agctgaatcc ggtccctggt gcggagtggc
     1861 gtccgcgtcg acacctggat ttccatcgtt caatctcctc acagaatgtt cgagacaatc
     1921 tactccgttt cattgcagag cgacacgatg ggcatctccg tttagtggca cacctctggg
     1981 atgaggcata ccctgacccc atacgttggg atggggcagc attccacagt accatggaag
     2041 agttcaccga ttctctagaa tcaaacctcg atactcgtcg tacagaacct caactcacat
     2101 cagtgctcga tcgagaaatt attcctcgac gtctagggca tctacacctt agtagacgtc
     2161 ttcaacgatt catgattgat gttagacttc accttcggcg tattgcgtat acagcatcca
     2221 tcgatgtgga tctacgcatg gattggcaac gctggatgca tcgtacccga cttctagatg
     2281 agcatctcaa ggacctcttc gccaatggta tcgagacccc cgacggaggg aaattcgggg
     2341 gcaagggatt ccgctcaact tggcaggaag gagtagttgc ctgtgcatct gctctgagaa
     2401 gagctatgga tctccctcct gaagaacgca atcgggcaga tgttgtcgcc cctatgattc
     2461 gagacgttgg ccttgcccta tccatgggtc agacatcgct ggagatattc gcagcccaag
     2521 taggtaaatc cggatcatat atggacggag gtcatccagg tgcaggggga agagatctcc
     2581 atatcggtga atggaacaag agggtgctcc cgcctactgc acccctccct attgcttcag
     2641 cgacattgac cggtgttgcc ctcgctgcgg ctagactcga tgcacggcgg tttcatctcg
     2701 ctccggtagg agaggggtgc agcagttcag gtgaattttg ggaggcgatg aacttcgcag
     2761 gtgcccgaag cctgcctatc ggattcatga ttcagaacaa tcagattgc
//
LOCUS       DUKB01000067            4609 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_253196, whole genome shotgun sequence.
ACCESSION   DUKB01000067 DUKB01000000
VERSION     DUKB01000067.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4609)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4609)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_253196"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3477)
                     /locus_tag="HA345_02370"
     CDS             complement(<1..>3477)
                     /locus_tag="HA345_02370"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012337.1,HMM:NF012759.1,HMM:NF012901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyltransferase domain-containing protein"
                     /protein_id="HIH84233.1"
                     /translation="DMVAGHSLGEYAALMVSGILRFEDALRAAAARGTEMGSVEVPDR
                     GIMASITAPFEAIESVLSSVDGYVIAANKNSPTMTVIAGETEPMREAMRLFEEGGATV
                     VQLQTSHAFHSRIVAPANEPLRRFLEGLEISLPSIPISANVDGTFYPNDVQPGQDVKD
                     VILEKLAPQMSSAVEWTSQIRSMHEAGARLYLEVGPKRALALFASQIIDEDDCLVNIT
                     NHPKAGGITSFLGALAMLAVAGRVPVIHGLDSSIHTPEFQAGPKGTNGLQAGIPSSAE
                     AEALRLRARPLPQSGVTSVSTTALENPTSSAVASTGLMEDEFQAQRRVAASIGKIISK
                     HVSYPEGVLVGQVSFDEIGLTSQALTMIADETRQIHEVSDDDPATFSTIQELVDWVVI
                     QPILRPIDHGTVITSSSSEVIQRGNPVVSGVSLGLPGLDEVFDEGGWDAILSGQNLIS
                     ELSPEMKQRLLDKRIVRLVKEEDGTANLVPADSLDTIPQLAGQGGHFDLAEQYGIDSH
                     LVDAFDIATSLAFAAGLEALADAGLPLIPVEQVNGVGKRMIRRWSLPEAERDRTGVIF
                     ASVFPGLQKVIEHALNNGQVEGGHFDRKYLLQVLSMGHSQFANWIGARGPNLAINNAC
                     ASTPAAFAIAEDWMATGRCDRVIIVSGDDSTSDVLMPWIGAGFAAAGAHAMGSEVSEV
                     ALPFDARRHGMLLGMGGAAFVIERSEDSLERGVTPYVEVLGAEIANSAYHPTRLDTDH
                     AAMVMERFVARMEVRHGLNRADLVDDMTFMSHEPYTPPRGGSASAEVASLRSVFGDAA
                     SRILITNGKGYTGHPMGVGLEDAIVIRGLAAGRLPPIANFRDVDSTLGELNLCMGGKH
                     DVRYALRHGAGFGSQIALTFLRRIANSDTARFTPGRIDSWVKAHSGASNIHLRILDRK
                     FVAYLDPDDNLIGGVQGNTPLFEASDGSISDPSFSVSTIPVPVEPLSNPAPAPVVPAE
                     TSSSPEPTHSPPPSSSNKDIQSGVLSVVAEATGYPSEFLELDADMEGELGIDSIKQAE
                     IMAELREMFSLPVDDSFQLREHPTLGHVIGYIASFDSVSPAELESTLVDSDDSVDMAI
                     VSSEESMPEENDYEGNSESTLVSQSTDSVDDEIIQVVVEHTGYPAEFLEMDADMEGEL
                     GIDSIKQAEIMA"
     assembly_gap    3478..3781
                     /estimated_length=304
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3782..>4076)
                     /locus_tag="HA345_02375"
     CDS             complement(<3782..>4076)
                     /locus_tag="HA345_02375"
                     /inference="COORDINATES: protein motif:HMM:NF012901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HIH84234.1"
                     /translation="HMYPGQGSQYVGMTHDLSMRYGIIGSTWKEADVVMEDIIGEPLS
                     DFVLRTGLSKQEMAIAEEKLKQTEYTQPAMLTADLALERLLNQHGIHPDMVAGH"
     assembly_gap    4077..4383
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4384..>4609)
                     /locus_tag="HA345_02380"
     CDS             complement(<4384..>4609)
                     /locus_tag="HA345_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84235.1"
                     /translation="VVLPQISAEYVAEGVRVGLVADSWATLEKRFTMLESSLEDRSKW
                     DFLAKQFIFVSDAPPLTDNQLLAHMYPGQGS"
BASE COUNT         1060 a         1051 c          956 g          931 t
ORIGIN      
        1 tccgccataa tctctgcttg cttgattgaa tcgataccga gttcgccctc catatccgca
       61 tccatctcaa ggaactctgc aggatatccg gtgtgttcca ctacaacttg gataatctca
      121 tcatccacag aatcagtaga ttgtgaaact agagtagatt cgctgtttcc ctcgtaatca
      181 ttctcttcag gcattgattc ctctgaagat acaattgcca tatcgaccga atcatcagaa
      241 tccaccaacg ttgattctaa ttccgcagga gatacactgt cgaaggatgc gatgtaaccg
      301 attacgtgac caagtgttgg atgctctcgg agttggaagg aatcgtctac agggagagaa
      361 aacatctcgc gcagttccgc cataatctct gcttgcttga ttgaatcgat tccaagctcc
      421 ccctccatgt ctgcatccaa ctcaaggaac tcagacgggt atcccgtcgc ttccgcgacc
      481 actgaaagga ctcctgattg gatgtctttg tttgaggaag atggaggcgg agagtgagta
      541 ggctcgggtg aggaagatgt ctccgctgga acaacaggag caggtgcagg attagagaga
      601 ggctcgactg gaacaggaat tgtagaaaca gagaatgatg gatcagatat tgaaccatca
      661 gaggcttcga aaaggggcgt attcccttgc actcctccaa tgaggttgtc atcaggatca
      721 agataggcaa cgaacttacg atcaaggata cgaagatgaa tattggaagc accggaatgt
      781 gccttgaccc acgaatcaat cctaccagga gtgaatcgag cagtgtctga atttgcaata
      841 cggcgtagga aggttagcgc tatctggcta ccaaaaccag ccccatgccg caaggcgtat
      901 cggacatcgt gcttaccacc catgcagaga ttgagttcac ccagagtaga atctacatca
      961 cggaagttcg ctatcggagg aagacgccct gcagctaggc cacgaattac aatcgcatct
     1021 tctaatccaa cccccattgg atgtccagtg tagcccttcc cgttcgtgat tagaatccgg
     1081 gaggctgcat cgccaaaaac agagcggaga gaggcgacct ctgcagaggc tgaacccccg
     1141 cgaggaggag tgtatggttc gtgcgacatg aaggtcatat catcgacgag gtccgctcga
     1201 ttgagaccat gccgcacctc catcctcgcc acaaatcgtt ccataaccat cgccgcatga
     1261 tctgtatcaa gacgagtcgg gtgatacgca ctgttcgcaa tttctgctcc aagaacttcg
     1321 acgtatggag taactcctcg ctcgagagaa tcctcagacc tctcgatgac gaatgcagcc
     1381 cctcccatac cgagaagcat accatgtctc ctagcatcga acggtagagc aacctcactc
     1441 acctccgaac ccattgcatg agcgcctgct gcagcaaaac cggcgccaat ccagggcatc
     1501 aagacatcac tggttgaatc atcgccactg acaatgatga ctcgatcgca tcgaccggtt
     1561 gccatccaat cctccgcgat agcgaaggct gcaggagtag aagcgcaagc gttgttaatt
     1621 gcaagatttg gaccgcgggc acctatccaa ttagcaaact ggctgtgacc cattgaaaga
     1681 acttggagga gatacttacg gtcaaagtgg cctccctcaa cttgcccgtt gttcagagca
     1741 tgttcgatta ccttctgcaa gccgggaaat acggaagcaa agattacacc tgttcgatca
     1801 cgttccgctt caggtaaaga ccagcggcga atcattcgct ttccaacacc gttaacctgc
     1861 tccacaggta tgagcggtaa acctgcatct gcaagtgcct caagacctgc tgcaaatgct
     1921 agagaggtcg cgatatcaaa cgcatcgaca aggtgtgagt caataccata ctgttcggca
     1981 agatcgaagt gcccgccttg gccagcaagc tgtgggattg tatcaagaga atccgcaggc
     2041 accaaatttg cagtcccatc ctcctccttc accaggcgaa caatacgctt gtccaatagg
     2101 cgctgcttca tctctggaga gagttctgaa atcagattct gaccgctcag gattgcatcc
     2161 catccaccct cgtcgaaaac ctcgtcaaga ccgggtaagc caagcgacac ccctgataca
     2221 actggattac ctcgttgaat aacctctgaa cttgaagatg tgattacagt gccatgatca
     2281 ataggtcgaa ggattggttg aatgacgacc caatctacca attcctggat ggtactaaat
     2341 gtcgcaggat catcatctga tacctcgtgg atttgacgag tctcatcggc aatcatagtg
     2401 agtgcctggg atgtcaagcc aatctcatcg aaggaaacct gacctacaag aacgccttcg
     2461 ggatatgaaa cgtgtttgga aatgattttc ccaattgatg ccgccactct ccgctgtgct
     2521 tggaattcgt cttccatcaa tccagtagat gctacagccg aagaagtagg gttctccaat
     2581 gcggttgttg aaactgatgt aacaccactt tgaggaagag gcctggcacg aagacggagg
     2641 gcttcagctt cagcagaaga aggaatacct gcctgcaatc cattcgtccc ttttggtccg
     2701 gcttggaact caggagtatg aatcgatgaa tctagaccgt ggatcaccgg gacacgcccc
     2761 gctacagcca gcatggcaag agcccctaag aaagatgtaa ttccgcccgc ttttggatga
     2821 ttagtgatgt tgactaaaca gtcatcttca tcgataatct gactagcaaa taaggcgaga
     2881 gcacgcttcg gtccaacctc gagatagagg cgggcgcctg cctcatgcat agaacgaatc
     2941 tgtgaggtcc actccactgc cgaagacatc tgaggggcga gtttctctaa gatgacatct
     3001 ttcacatcct ggcctggctg gacatcattt ggatagaatg taccatccac gtttgctgag
     3061 atagggatcg aaggaagtga aatctccaga ccctcaagga aacggcgaag gggttcgttg
     3121 gctggagcaa caatacggct gtggaatgca tgactagttt ggagttggac aactgttgca
     3181 ccaccctctt caaagaggcg catcgcctca cgcattggtt cagtttcacc agcgattacc
     3241 gtcatcgtag gggaattctt gttcgccgcg ataacgtacc catcgacaga actgagcact
     3301 gattctatgg cctcaaaagg agctgttatc gatgccatga tgcctcggtc tggaacctcc
     3361 acactaccca tctcggtacc tcgtgctgcc gcagctctga gtgcatcctc aaatcggagt
     3421 attcctgata ccatcaacgc agcatattcg cctagactat gtccagcgac catgtcannn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3781 ntatgtccag cgaccatgtc aggatggata ccgtgctgat tgagtaaacg ctccaacgcg
     3841 aggtctgcag tcaacatcgc aggctgagta tactccgtct gcttgagttt ctcctctgca
     3901 atcgccattt cttgtttgct gagtccagtt ctcagcacga aatccgaaag aggttcgccg
     3961 atgatgtcct ccatcacaac atcagcttct ttccaagtac tccctatgat tccataccgc
     4021 atcgaaagat cgtgggtcat tccgacatac tggcttcctt gacctggata catgtgnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4381 nnngcttcct tgacctggat acatgtgtgc aaggagttgg ttgtctgtaa gtggaggagc
     4441 atcagatacg aaaatgaact gcttagctag gaaatcccac tttgaacgat cttctaatga
     4501 ggattcaagc atcgtgaacc gtttctccaa ggtcgcccaa gaatcagcaa caaggcccac
     4561 gcgaacaccc tctgcaacat attctgcaga tatctgaggt aagacaacc
//
LOCUS       DUKB01000068            8401 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_18108, whole genome shotgun sequence.
ACCESSION   DUKB01000068 DUKB01000000
VERSION     DUKB01000068.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8401)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8401)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8401
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_18108"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1625)
                     /gene="groL"
                     /locus_tag="HA345_02385"
     CDS             complement(<1..1625)
                     /gene="groL"
                     /locus_tag="HA345_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003332087.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HIH84236.1"
                     /translation="MAKQMLYGEDARRKLLDGIDAVANAVKVTLGPAARTVVLEKSWG
                     SPTIINDGVTIAKDIELSDPFANMGAKLVQEVASKTQDNAGDGTSTASILAQALCHTG
                     LRNVTAGASPVELKAGFDEAIEAVVERLKGMAEPVEDSSTIHQVATIAANNDSSIGEL
                     IAEAVEAVGQEGVITVEEAKSAETDLKVVEGMEVDKGYISPYFITDRERKEAVLENPM
                     ILITDQTINSAQDLLPSLEASMQQKRPLLIIAKDLEGEALATLVLNVASKIVKAAAIK
                     APGFGDEQGELLEDIAILTGASVLAKDRSADIKTQGPMSLGGAEKVILAKNKTTFVGG
                     EGDKTQISERVELLRSQEKVATSKWDTEKMQKRIGKMTGGVAVLRIGAATETEMKEKK
                     ARVDDALNATRAAMAEGVVVGGGVALLRARSVLDDLKANNSGDRAIAISAVYDALSAP
                     VRQISDNAGQEASVVVNTIISNDSASFGYNARTNEYVDMLEAGVIDPVKVTRNALQSA
                     GSIAGLVLTTETLVADEPQPDSGPDMPDMGGMGG"
     gene            complement(1648..1917)
                     /locus_tag="HA345_02390"
     CDS             complement(1648..1917)
                     /locus_tag="HA345_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019006256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HIH84237.1"
                     /translation="MGIGIEPMGEMVLLQMEAAPEKTHSGLLLPEEAREKMTVGLVVA
                     VGSDAENVNAGDRVIYRQYSGTKIEWLGVEYLLIKSEDLQAKVNE"
     gene            complement(1971..4946)
                     /gene="uvrA"
                     /locus_tag="HA345_02395"
     CDS             complement(1971..4946)
                     /gene="uvrA"
                     /locus_tag="HA345_02395"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006446530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HIH84238.1"
                     /translation="MGDDSPPEIPKGPWIRVRGARTHNLKDVDVDIPRDQFVVISGVS
                     GSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQMKKPDCDSIDGLSPAISIDQKQGS
                     HNPRSTVATVTEIMDYLRLLWARIGRPHCPECGIEVARRTVQEIVDDVMWRFEGHAIA
                     IWSPVIRDRKGTHSDLIRTLIEQGYTSGRINGRDAEFEEAPNLEKNLRHSIDVRLDRL
                     RLLRTNRQRLTEAVDAGLRLGGGAVAIESLSGIQDPTTVESPRSSETEPGTVMPYSEE
                     FACPTHGAFLPEMSPRIFSFNNPLGACPGCQGLGVQRTFSEELIIDSQLSVEDGCVTP
                     FRLSMHSNWYRSQMIQVCEHYGINSTIPYGELDDDAQDILAHGSGSTVIHFHYESERG
                     SSFSSSKAWEGILPRLKRQLTDTSSEKTRSRLATYMNDEPCSECDGKKLNRATSMVTV
                     GDVTLPQLSSCSVLEALAVVQQWRSEVIDPIWLELEKDAPEGAVLDATQQLTDRDLHI
                     GREVIKEIENRLRFLALVGLDYLTMDRRANTLSGGESQRIRLASQIGTRLTGVMYVLD
                     EPSIGLHARDNARLLSTLRELTNIGNTLLVVEHDEETLRQADWIVDLGPGAGREGGQV
                     VANGSLNEVLESETSLTGAYLSGRMKIPLPESRTNPGDNWVTINGAAQNNLAEINVRL
                     PLGCFISITGVSGSGKSSLVTGILAPALLRTLHRSDATPGRHQSINGIENVDKAIVID
                     QTPIGRTPRSNAATYTGAFDLIRALFSEAPLSKERGYTPGTFSFNVRGGRCEACKGGG
                     SIKLEMNFLPDVWIECEVCKGTRYTRETQEVLWKAHSIHDVLQMTIEDAATFFSNQRK
                     IHRILKTLVDVGLGYIRLGQPATTLSGGEAQRVKLATELHRPPKKHTFYILDEPTTGL
                     SMADVHQLIGVLLRLRNNGHTVLVIEHNMDVIKSSDWIIDLGPDGGDGGGEIVAEGTP
                     EQVAKSKNSYTGQHLGSML"
     gene            complement(4982..5224)
                     /locus_tag="HA345_02400"
     CDS             complement(4982..5224)
                     /locus_tag="HA345_02400"
                     /inference="COORDINATES: protein motif:HMM:NF022577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HIH84239.1"
                     /translation="MSNVGQLDRIIRGSAGISIAFAELTGFLGIFEIVLEIFAFGLAI
                     FLTFTALMGYCPFYPILGISTCPVVINEASKSPDVS"
     gene            5289..6080
                     /gene="pyrF"
                     /locus_tag="HA345_02405"
     CDS             5289..6080
                     /gene="pyrF"
                     /locus_tag="HA345_02405"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HIH84240.1"
                     /translation="MSAEIWGNLWSLNRSAFARRYMVTAIEKETLVCLAADLRTMADI
                     KALITEVGPYIACLKLHVDIVDDWDIEGWMEICELAKNLKVAIWEDRKFADIGRVSRQ
                     QMAGAFDIRSWADIVTAHLISGPDIVQGLQNGWGDVGREGGVLLLAQMSSRGNLLNEE
                     YTTAVVKHGNEIEGVLGYIGNGSEPNAIRTLRDIVGSTRMIWTPGINLNVGDGVAGQR
                     YGRPREAVLAGADCLIVGSGIHQSQNRGEMAAEYARISWQALLDR"
     gene            6085..6354
                     /locus_tag="HA345_02410"
     CDS             6085..6354
                     /locus_tag="HA345_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84241.1"
                     /translation="MDVIDLIGWLLVLILFVVLIIGLLWMRGRSLRLEQMLNEGDVEI
                     LNVGNTQSEVLNHLPDGSRIIPYTPYIAETESVNSMTQEHRMGVN"
     gene            complement(6351..7010)
                     /locus_tag="HA345_02415"
     CDS             complement(6351..7010)
                     /locus_tag="HA345_02415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84242.1"
                     /translation="MTTELPSALIVVNERNAHRRITDLLRRRGHTIEDQPNGDRAVDT
                     YVKMRRESPTVVFLSLDVAGPLNGHLVGLEIRESDPNARLVYICSRIRRSMAEDVAYS
                     AGAVAILQVPFTMSDIEDSWDQIMGPVPEAPGLLDLDALYPDLRSIDGDEVVPVDELA
                     PLPIPTNLPPPPEPLMPINPIQSKRKKRRWPRVLFLIAILSGIGAVVYFQQDTIMELI
                     P"
     gene            complement(7049..7429)
                     /locus_tag="HA345_02420"
     CDS             complement(7049..7429)
                     /locus_tag="HA345_02420"
                     /inference="COORDINATES: protein motif:HMM:NF020473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1844 domain-containing protein"
                     /protein_id="HIH84243.1"
                     /translation="MNSPFEDEKSERLFGLIQMLQRTALVNMGGIPDHEGQIHFNLGE
                     AKAAIDAIDAIGEKTNGNLSELEANLLRGTLSELRMIFVKAPEQQAAIEVEMKRQEEL
                     QKTFTDPATAPSEIVHTDATSEEE"
     gene            complement(7426..>8401)
                     /gene="ftsY"
                     /locus_tag="HA345_02425"
     CDS             complement(7426..>8401)
                     /gene="ftsY"
                     /locus_tag="HA345_02425"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HIH84244.1"
                     /translation="GRNLVSVQDAPRASTGSSKVDLESGATLEIDLGGGIVETGGRVI
                     KDSAALESLLEEMEMILLEADMGIDAIDTVLNLLRAELIGSRLRKGANLAKVLEASLK
                     RALRSLLRAGYWDLDETVNRLSKSEDGPVVLMVVGVNGVGKTTSVAKMAHRFTQEGHE
                     VVLAAADTFRAGAIDQLQMHANRLNVRCVRSQRGGDPAAIARDAIDSAKARGADVVIV
                     DTAGRMQNKTNLMEELRKVHRVSDPHLVLFVADALAGNDAIEQAVVFQKVLDFDGFFL
                     CKLDTAKGGAALSIAHITGRPIVMVGVGQGYEDLHPFDPDWLLEEMFR"
BASE COUNT         2125 a         1987 c         1958 g         2331 t
ORIGIN      
        1 ccacccatac cacccatatc tggcatatct gggccggaat ctggttgagg ttcatcggct
       61 accaatgtct cagttgtgag cactaagcct gcaattgagc ctgcagactg aagggcgttt
      121 cttgtgacct ttactgggtc aattacaccc gcttctagca tgtcgacgta ttcattcgtt
      181 cgagcattat atccgaaaga tgctgaatcg ttggaaatga tcgtgttaac gactacgcta
      241 gcttcctgtc ctgcattgtc actaatctgg cgaaccggag cagaaagtgc gtcgtatact
      301 gcagagattg caattgctcg gtcccctgaa ttgttggcct ttaggtcatc gagaacactt
      361 cgagcgcgga gaagagcgac tccgccgccg actacaacac cttcagccat tgcagctcgt
      421 gttgcattca atgcatcatc cacgcgtgct ttcttctctt tcatctcagt ttcagttgct
      481 gcaccgatac gaagaacggc gacaccacca gtcatcttcc cgatacgctt ctgcatcttt
      541 tcagtgtccc actttgatgt ggcaactttc tcttgactgc ggagtagttc aacacgctcg
      601 ctaatctgag ttttgtcacc ttccccacct acgaaagtgg tcttattctt ggcaagaatg
      661 actttctcag cacctccgag tgacattggg ccctgagttt tgatgtcagc gctgcgatct
      721 tttgcaagga cggaggcccc ggtgaggatt gcaatatcct ccaataattc tccctgttcg
      781 tctccaaaac caggggcttt gattgctgct gctttgacaa ttttacttgc aacattcaga
      841 actaaagtag caagtgcctc gccctcgaga tcctttgcaa taattagcag gggtcgcttt
      901 tgttgcatac tcgcttcaag gcttggtaac agatcctgag cactgttgat ggtttggtca
      961 gtgatgagaa tcattggatt ttcaagaacc gcttcctttc gctcacgatc tgtaatgaaa
     1021 taaggggaaa tgtagccctt gtcgacttcc atcccttcaa ctaccttgag atcggtttca
     1081 gcagactttg cttcctcgac agtgattacg ccctcttggc ctactgcctc gactgcttct
     1141 gctatgagtt caccaataga tgagtcattg ttggctgcaa ttgtagcgac ttggtgaatt
     1201 gtgcttgagt cctcaacagg ctcagccatt cccttcaagc gctcaactac agcttcaatg
     1261 gcctcgtcga agccagcttt gagttcaact gggcttgcgc cagcggtaac attccgtagt
     1321 ccagtgtgac atagagcttg agcaagaatg gatgcggtgg atgtgccgtc accagcatta
     1381 tcctgtgtct tgctagcgac ctcttggact aattttgcac ccatatttgc aaacggatca
     1441 gatagttcga tgtcctttgc aatagttaca ccgtcattga taatcgtcgg gctaccccat
     1501 gatttttcga gaacaaccgt tctggctgcg ggcccgagtg tcaccttaac tgcattcgca
     1561 actgcatcga taccatcgag taatttgcgt cgtgcatctt ctccatacaa catctgcttc
     1621 gccatacttg tcatctccac atttctttca ctcgttgacc ttcgcttgaa ggtcctcgga
     1681 cttaattaga aggtattcaa caccgagcca ctcaatcttc gtgccgctat attgtcgata
     1741 gattacgcga tcgcctgcgt ttacattctc ggcgtcggag cctacagcaa ccacaagacc
     1801 gactgtcatc ttctcgcgtg cttcctctgg caaaagtaga ccagaatgtg ttttctcggg
     1861 tgcagcttcc atctgaagaa gcaccatctc tcccattggc tcgattccaa ttcccataac
     1921 aatcactccg gctctgttgg gtgtctttct taaacctcat cctatcgatt ctacagcatc
     1981 gagccaagat gttggccagt ataggaattc ttggatttag caacctgttc aggggtgcct
     2041 tctgcaacaa tttcgcctcc cccatccccc ccatctggac caagatcgat tatccaatca
     2101 gaggatttga ttacgtccat attgtgttca atcacaagga ctgtgtggcc attattacga
     2161 agtctgagaa gaacaccgat taattggtga acatcggcca ttgagagtcc tgttgtcggt
     2221 tcatcaagaa tgtagaatgt gtgtttcttt ggtggccggt ggagttcagt agcgagtttg
     2281 actcgttgag cttctccccc tgataatgtg gttgctggtt gacctaaacg aatgtagccc
     2341 aggccaacat cgacaagggt tttgagaata cggtgaattt tcctctgatt tgagaaaaag
     2401 gttgcagcat cctcgattgt catctgaaga acatcgtgga tggaatgggc tttccaaagc
     2461 acttcttgtg tttctcgagt atacctcgta cctttgcaaa cctcacattc aatccagaca
     2521 tcgggaagga aattcatctc gagtttgatt gaacccccgc ctttgcaggc ttcacaacgg
     2581 ccaccacgaa cattgaatga gaatgtgcct ggagtgtatc ctctctcctt tgaaagaggt
     2641 gcttcagaga ataatgcacg aattaaatcg aaggctcctg tgtaagttgc agcattcgaa
     2701 cgaggggtgc ggcctatggg tgtctgatca attacgattg ccttatccac attttcgatt
     2761 ccattgatac tttgatgtcg ccccggggtt gcatcagaac gatgtagggt acggagtagt
     2821 gctggagcaa gtataccagt aactagtgag gactttccag aaccagatac tcctgtgatc
     2881 gatatgaagc agcccaaagg tagacggaca ttaatctcag ctagattatt ctgagcagcg
     2941 ccattgattg tgacccaatt atcacctgga ttagtacgtg attcaggaag aggaattttc
     3001 atcctaccac tgagatatgc tcctgttagg cttgtttcac tctcaagtac ttcattgaga
     3061 gaaccgttgg ctacaacttg ccccccttca cggcccgctc ctgggcctag atccactatc
     3121 caatctgctt gacgaagtgt ctcttcatcg tgttcgacaa cgaggagggt gtttccgatg
     3181 tttgtaagtt cacgtaatgt agaaagaagg cgtgcattat cccttgcatg taaaccaata
     3241 ctaggttcat cgagtacgta cattacgcca gtcagtcgtg ttccaatctg actcgcaaga
     3301 cggattctct gactttctcc accactcaga gtgttcgccc ggcgatccat tgtgaggtaa
     3361 tccagaccaa cgagtgcaag gaaacggagg cggttctcga tttctttgat tacttctcgc
     3421 ccgatatgga gatcacggtc tgtgagttgt tgagtggcat ccagcaccgc gccctctggt
     3481 gcatccttct ctaattcaag ccaaattgga tctatcactt cacttcgcca ttgttgaaca
     3541 actgcaaggg cttcaagaac agaacaagag gaaagttgtg gtagtgtaac atcacctaca
     3601 gtcaccatcg aagtggctcg attcaatttc ttaccatcac attcactaca cggttcgtca
     3661 ttcatgtaag tcgctaaacg agagcgcgtt ttctctgaag acgtgtctgt caattgtctt
     3721 ttgagacgtg ggaggatgcc ttcccaagcc tttgaggagg agaatgagga gcctcgttca
     3781 gattcataat ggaaatgaat cactgtcgaa ccactaccat gagcaaggat gtcttgtgca
     3841 tcgtcatcta attcaccata tggaattgtg gaattaattc catagtgctc acaaacttga
     3901 atcatttgag aacgatacca attagaatgc atagaaagcc ggaatggcgt aacacatcca
     3961 tcctcaacag aaagttgtga atcaatgatg agttcctcgc tgaaagttcg ctgcacgccc
     4021 aagccctgac atcctggaca tgctcctaat ggattattga aagagaatat tcgtggactc
     4081 atctcaggga gaaaggcccc gtgtgttgga caggcgaact cttccgaata gggcatcaca
     4141 gtacctggtt cggtctcgct agatctaggg ctctctactg tcgtaggatc ttgtattcca
     4201 ctcagggatt cgattgcaac agcgccacca ccgaggcgta atccagcatc taccgcttct
     4261 gtaaggcgtt ggcgatttgt cctcaataga cgaagtcgat caaggcggac atcgatgctg
     4321 tggcggaggt tcttctcaag attgggtgct tcttcaaatt cagcatctcg gccgttaatt
     4381 cggccagaag tatatccttg ctcgatcaag gttcgaataa ggtcagaatg tgtacctttt
     4441 cgatctctaa ttacaggtga ccaaatggca attgcgtggc cttcgaatct ccacatcaca
     4501 tcatcaacaa tttcttgtac ggttctcctc gcaacttcta tgccgcattc tggacaatgg
     4561 gggcgcccaa ttcgtgccca aagtagacgt aaataatcca taatttctgt aaccgtcgca
     4621 acagtagaac gtggattgtg ggatccttgt ttttgatcaa tactaatcgc aggtgaaaga
     4681 ccgtcgatgc tgtcgcaatc tggctttttc atctgaccga gaaactggcg tgcataggag
     4741 ctcaggctct ctacatacct tcgttgaccc tccgcataca atgtatcgaa agcaaggctt
     4801 gattttccag accctgagac gcctgaaatg acaacgaatt gatcgcgagg gatatcaaca
     4861 tcaacatctt tcaaattgtg agttcttgca cctcgaactc gaatccaggg cccttttggt
     4921 atttcgggcg gtgaatcatc gcccatactc ttctgccacc tgcggatgtt cttgaactgt
     4981 atcaagatac atcgggactc ttcgaggcct cattaatcac aactggacag gttgaaatcc
     5041 cgagaattgg gtaaaatggg caatacccca tcagagcagt aaatgtcaga aatatcgcca
     5101 aaccaaaggc gaatatctca agaactatct caaaaatacc caaaaaaccc gttaattcag
     5161 caaacgcaat ggaaattcct gctgaacctc ggatgattcg atctagctgt ccaacattgc
     5221 tcatgtcggg atgatttggt gaaatccgat atagtccctc gttcagaagt acaatacagg
     5281 cggggactat gtcggcggag atttggggta atttgtggtc cttaaatcga agtgcattcg
     5341 cccgtcgtta catggttaca gccattgaaa aagaaacatt ggtctgctta gccgcagatc
     5401 ttcgaacaat ggctgatatt aaggctctaa tcactgaagt ggggccttat atcgcatgtc
     5461 tcaaacttca cgtcgatatt gtcgatgatt gggatattga aggatggatg gaaatttgtg
     5521 agttagcaaa gaatctcaaa gtagcaattt gggaagatcg taaatttgca gatattggaa
     5581 gagtaagtcg gcaacagatg gcaggtgcct ttgatatccg ttcatgggca gatatcgtca
     5641 ctgcccatct aatatctggc ccggatattg tgcagggctt gcaaaatgga tggggtgacg
     5701 taggtagaga ggggggggtt ctccttctag ctcaaatgtc gagtcggggt aatttactca
     5761 atgaagaata cacgacagct gtagtcaaac atgggaatga aatcgaaggt gttctaggtt
     5821 atattgggaa tggaagtgag ccaaatgcaa tacgaacgct cagagatatt gttggatcta
     5881 ctcgaatgat ttggacgcca ggaattaatc tcaatgtagg tgatggagtt gcagggcaaa
     5941 gatatgggcg ccctcgtgaa gctgtgcttg ctggagcaga ttgtttgatt gtaggttcgg
     6001 gaattcacca gagccaaaac cggggagaaa tggctgcgga atatgcacga atttcatggc
     6061 aggcattact cgataggtga gtgaatggat gttatcgatc taattggttg gttacttgtt
     6121 ctcattctat tcgtggtgct aatcattggt cttctttgga tgagggggcg ttcattgcga
     6181 ttggaacaga tgttgaatga gggtgatgtg gaaattttga atgttggaaa tacgcaatca
     6241 gaagtactga atcacttgcc agatggaagt agaataatcc cttacacacc ctatattgca
     6301 gaaactgaga gtgttaattc aatgacccaa gaacatagga tgggagtgaa ttaaggtatt
     6361 aattccatta tagtgtcttg ttgaaaatat actactgctc caataccgct gagtatagca
     6421 atcaagaaaa gaacacgggg ccagcggcgt tttttgcgtt tcgattgaat tggattgatt
     6481 ggcattaggg gctcgggcgg tggtgggaga tttgttggga ttggtaatgg ggctaactca
     6541 tctacaggta cgacttcgtc tccgtcgatt gaacgtaaat ctggatagag ggcatcaaga
     6601 tctaggagtc caggggcctc aggcactgga cccattatct ggtcccaaga atcttcaatg
     6661 tcagacatag tgaatggtac ttgtaaaatg gcaactgcac ctgcactgta agcaacatct
     6721 tcagccatag aacgtcgaat tcttgaacaa atgtatacta aacgtgcatt gggatcagat
     6781 tctcgaatct cgaggcctac aagatgtcca ttcaagggcc cagcaacatc caatgaaagg
     6841 aatactactg ttggtgattc tcttcgcatc ttcacataag tgtctacagc tcgatcgccg
     6901 ttgggttgat cttcgatcgt gtggccacgg cggcgaagta aatctgtaat gcgtcgatgc
     6961 gcgttgcgtt cattcacgac aatgagtgcg ctcggcaatt cagtcgtcat ggttctgaag
     7021 ggtaagggtg tgcacatgaa tgacgcggtc attcctcttc tgaagtggca tctgtatgaa
     7081 caatctcgct tggagcggtt gctggatctg tgaaagtctt ctgaagttct tcttggcgtt
     7141 tcatttctac ctcaatggcg gcctgttgtt ctggagcttt aacgaaaatc attcgaagtt
     7201 cggaaagagt tccacgcaac aaattcgcct ctaattctga caggttgccg ttagttttct
     7261 caccaattgc gtcgattgcg tcgattgctg ctttcgcctc tccaagattg aaatggattt
     7321 ggccttcatg atctggaatt ccacccatgt tcacaagtgc cgttctttga agcatctgaa
     7381 tcaaaccgaa aagtcgctca gatttttcat cctcgaatgg tgaattcatc tgaacatctc
     7441 ctccaacaac caatcaggat caaaggggtg tagatcctca taaccttggc caactcctac
     7501 cattacaatt ggtcgtccag taatatgggc aatggaaaga gcagctcctc ctttggcggt
     7561 atcgagttta cacagaaaga agccatcaaa atcgagcact ttctggaaaa ccacggcttg
     7621 ttcaatcgca tcatttccag ccaatgcgtc tgcaacaaat aggacgaggt gtggatcaga
     7681 tacgcggtgt actttgcgaa gttcctccat tagattcgtc ttattttgca tccgaccggc
     7741 tgtatcgacg atgacgacat cggcaccccg tgcttttgca gaatcaatag cgtcacgagc
     7801 gattgctgct ggatcgcctc cccgctgact tcgcacgcat cgaacgttta ggcgatttgc
     7861 atgcatctga agttggtcga ttgcgccggc tcgaaatgta tcagcggcgg cgaggaccac
     7921 ttcgtgtcct tcctgtgtaa atcgatgggc catcttagca acactggttg ttttaccaac
     7981 tccattcaca cctacaacca tgagaacaac agggccatct tcagattttg aaaggcgatt
     8041 tacggtctcg tcaagatccc aataccccgc acgtaaaaga gaccttaggg ctcttttcag
     8101 actggcttcg agaaccttgg cgaggtttgc ccccttacga aggcggctac caattaattc
     8161 cgccctgaga aggttaagca ccgtatctat ggcatctatc cccatatcgg cttcaagaag
     8221 gatcatttcc atttcttcaa gtaaagattc caaagctgcg gaatccttga tcacccgacc
     8281 tcctgtttct acaatacctc ctccaaggtc aatctcgagg gttgctcctg attcaagatc
     8341 tactttgcta gaaccagtag aggcacgtgg tgcatcctga acagaaacta ggttacgacc
     8401 t
//
LOCUS       DUKB01000069            3980 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_178628, whole genome shotgun sequence.
ACCESSION   DUKB01000069 DUKB01000000
VERSION     DUKB01000069.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3980)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3980)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3980
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_178628"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="HA345_02430"
     CDS             <1..254
                     /locus_tag="HA345_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="originally found to be an inhibitor of the
                     antiviral RNase-L in human cells; contains ABC-type
                     nucleotide binding domains; putatively functions in RNA
                     maturation; Derived by automated computational analysis
                     using gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HIH84245.1"
                     /translation="MVIDHDIYFIDIVSDSLLVFEGEGGVEGTAVGPLHLRQGMNRFL
                     KNVGITFRRDQDTKRPRINKPDSRKDREQKASGEYFYTK"
     gene            269..2032
                     /locus_tag="HA345_02435"
     CDS             269..2032
                     /locus_tag="HA345_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84246.1"
                     /translation="MPVNRPPFGGAGRRRRNRLSGSSLVSWERCPRGWMVNRRLGLRG
                     PVRPSMLLGILLEDAVVGLLMESPPRNGSPPHGRSRWLEHQGAMEAEIVQTTPVDSIE
                     GIHDWLHSLVPEMADYVYQTLLQQWEETPWKTDEADIDAIQVATIRKQIRAGLKMQIA
                     TANSCLAEGGGPHLETYRMTGDPHNPPAPRWDSAQEEKFPGFQNSGELVDWWEAWEIS
                     RPWMKDPRINEPQRIHHPGGWASGEMDVVHRWRSKATIVDIKSGLHGGRPQPNLEAQL
                     RFYRWLWHQTREADAQGVDCLEGWFLLDGHVHRIDAHADEDMDTETTRLKAIRNGMGS
                     VPEQDWEWIKPGGTATGHPLHCPHCDGMEVCGYSSKPEDRALRVFLPELHTLDPDALP
                     QGSTRIAKLPSRICVKGTIDGGWIENENPYGETVRVANLRVGTTYVVVEESESGVVDS
                     DAWHGEVAIADANPGHHRDRARLFLDGRSRLIDPKSDEQWIRLGLIPSRATVSGEVVS
                     IGSMSGTSQSGRPWSIRTLHLWDGSGVVEIAAFGSNRSRTFDSIVVGDAVTIRHGELG
                     WREGAPQIKIGRTTIIESIEC"
     gene            2071..3933
                     /locus_tag="HA345_02440"
     CDS             2071..3933
                     /locus_tag="HA345_02440"
                     /inference="COORDINATES: protein motif:HMM:NF024117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HIH84247.1"
                     /translation="MPVTLIDPVDIRVAGWNRLSASKVGIWRSCPRQYWMSYVLKLKE
                     PAPVAVVRGIAVENCISRVLRESPALIGDNMPDRILVSPLDENGNLAIESVDGWPGPT
                     LNGILPENRPHTLERLREWAFARVDAHFLRCTEEALLRWEMRPNRVGERTDLDPEIVR
                     SMSKAGIELHLEEVVRCKEEFSDEKVALWRTGSTRYEWPSPNGFPWKGLNLEPIEAET
                     GEIKWSEAWAISRPWFVDPDAPDFSMNSIHPEQWFQGEYDLIYRWDGKTRIIDLKASL
                     GNTDRSQLYPQQLRMYAWLWWETHKRMETIDGLEIWYLGDGGYRKMVDPPAEKDLFGM
                     AEDLSEIHSTLSNIQSEEDAPCEPSPVIRFASGGMEIETEPEPNARCRTCTYVALCPN
                     GGHDAQLPSDLTTEAFSRTVPVTPISHIKPRVTVEGEIFSMIQPPKLEDGGVTFSFTL
                     RQGHDQAEVKNAFRTAPKNVTRGLQKDVRVRIRGGIPGLWRGRIQIEVDNSASIELSD
                     GPQEDDIELIDIHPRVNAIGKVWAIELRPGIQPDGSNQTTWRIKMADSSGVLSVIGFK
                     MNVPDRARGIQRGDIIAIINGQPGEFGGQKQIKCIRDTSLILISSSDECADWRL"
BASE COUNT         1120 a          885 c         1065 g          910 t
ORIGIN      
        1 ctatggtgat tgaccacgac atatacttca tcgacattgt aagtgattca ttacttgttt
       61 ttgagggcga gggtggagtc gaaggaacag ccgtcggacc tctacatctc cgacaaggaa
      121 tgaatcgatt cctgaaaaat gttggaataa ctttccgtcg tgatcaagac acaaaaaggc
      181 cgagaatcaa caagcccgac agtcgcaaag atagggaaca gaaggcatca ggggaatatt
      241 tctacaccaa gtaaatcggg gaatatgcat gcctgtaaat cgacctccat tcggtggtgc
      301 tggacggaga cgtaggaatc gactgagtgg cagctccctt gtttcatggg aacgatgtcc
      361 aagaggttgg atggttaatc gacgactcgg cctcagaggt cctgtacgac cttcgatgct
      421 tctagggatt cttcttgaag acgctgtggt cggcctattg atggaatctc ccccaaggaa
      481 cggaagtcca ccgcatgggc gttcgagatg gctggaacat cagggtgcta tggaagctga
      541 aattgtacaa acaacacctg tagattccat tgaaggaatc catgattggc ttcattctct
      601 cgtacctgag atggcggatt acgtctacca gacacttttg caacaatggg aagagacgcc
      661 atggaagacg gatgaagccg atatcgatgc aattcaagtt gcgacaatac ggaaacagat
      721 ccgggctggc ctgaagatgc agattgcaac agcgaattct tgtctcgcag aaggaggtgg
      781 tcctcatctc gaaacatatc gcatgactgg agacccccat aatccgcctg cacctcgatg
      841 ggactccgct caagaagaga agttccctgg cttccagaat tcaggagaat tggtagattg
      901 gtgggaagct tgggagatat ctagaccctg gatgaaggac cctcgaatca atgaaccaca
      961 gcgcatccat cacccaggag gttgggcatc aggagagatg gatgttgtac accgttggcg
     1021 ttccaaggca accattgtcg acataaaatc cggacttcat ggtgggcgac ctcagccgaa
     1081 tctggaagcg caattgagat tctatcgctg gctttggcat caaacccgtg aagctgatgc
     1141 acagggtgta gattgtctag agggatggtt tctactcgac ggacatgtcc acagaatcga
     1201 tgctcatgca gatgaagata tggacacaga gacgactcgc ttgaaagcta ttcgcaatgg
     1261 aatgggcagt gtacctgagc aggactggga atggatcaaa ccgggcggga cagcaactgg
     1321 ccacccactc cattgtccac attgtgatgg catggaggtc tgcggctact catcgaaacc
     1381 ggaggatcgt gcgctcagag tattccttcc tgaactacat actctggatc cagatgcact
     1441 tccccagggg tcaactagga ttgcaaaact tccaagccga atatgtgtaa aaggtaccat
     1501 cgatggagga tggatagaga atgaaaatcc atacggagag acagtacggg tcgctaatct
     1561 tcgagtaggt accacgtatg ttgtagttga ggagtctgag tccggcgtag tggattctga
     1621 cgcatggcat ggagaggtag ccattgctga tgcgaacccg gggcatcatc gagatcgagc
     1681 acggctattc ctcgatggac gcagtcgtct catcgacccg aaatccgatg aacaatggat
     1741 tagattgggc cttatcccct cccgagcaac agtctctggc gaggtagtat ctatcggttc
     1801 aatgagtgga acttcgcaaa gtggaagacc atggtcaatt cgaacactac atctgtggga
     1861 tgggagcggt gtggtggaaa tcgctgcatt cggttcaaat cgatcacgta ccttcgattc
     1921 gattgtggta ggcgatgccg tgactattcg gcacggtgaa ttgggatgga gagaaggagc
     1981 accccagatt aagattggac gtactactat catcgaatca atcgagtgtt gaacgtcgta
     2041 ttcaataccc ctcgcgtcga atggccacct atgccggtca ctttgatcga tccagttgac
     2101 atcagggtcg ctggatggaa tcgattgtcg gcatccaagg taggcatctg gaggagttgc
     2161 ccacggcagt actggatgag ttacgtgttg aaactaaagg agcccgctcc agtcgcagtg
     2221 gttcgcggaa tcgctgtcga gaattgtatc tcaagagtgc ttagagagag cccagcactg
     2281 atcggagaca atatgcccga ccgcatccta gtttcacctt tggatgaaaa tggaaaccta
     2341 gcgatcgaaa gcgtcgatgg atggcctggc ccgaccttga atggaatttt acctgagaat
     2401 cgaccacata ctctagaacg attgcgagaa tgggcttttg cccgtgtaga cgcacacttt
     2461 cttcgttgta ctgaagaggc tttgctacgt tgggagatga ggccaaatcg tgtaggtgaa
     2521 cgaacagatc tcgatccaga aatagtccga agtatgtcga aagcaggaat cgaattacac
     2581 cttgaagagg ttgttcgatg caaagaggaa ttcagtgatg agaaagtagc attgtggcgc
     2641 actggaagca cacgatatga atggccatca cccaatggat ttccttggaa aggattgaat
     2701 ttagaaccta tagaagcaga aactggagag attaaatggt cagaagcatg ggccatatcc
     2761 cggccttggt ttgttgatcc agatgcaccc gacttctcca tgaatagtat ccatccggaa
     2821 cagtggttcc aaggggaata cgatctcatc taccgctggg acgggaagac gcggatcatt
     2881 gacttgaagg catcattggg taatactgat cgatcccaac tctaccctca acagctccgg
     2941 atgtacgcct ggttatggtg ggaaactcac aaacgaatgg aaactatcga tggactcgaa
     3001 atatggtatc ttggagatgg aggttaccgg aaaatggtag atccaccggc agaaaaggac
     3061 ctctttggaa tggctgaaga tttgtctgag attcactcta ccctatccaa tatccaatct
     3121 gaggaagatg caccatgcga accatctcct gtaattcgat ttgcctccgg aggtatggaa
     3181 attgaaacag aacctgaacc taatgcaagg tgtcgaacat gtacctacgt agcactatgc
     3241 ccaaatggag gccatgatgc tcaattaccg tccgatctaa ctacagaagc tttctctcga
     3301 accgtgccag tgacaccgat tagtcacatc aaaccacgtg taacagtgga gggagaaatc
     3361 ttcagtatga ttcaaccccc taaattggaa gatggaggag tcaccttctc cttcacttta
     3421 cgccaggggc atgatcaagc cgaggtgaaa aacgcattcc gtaccgctcc caagaatgtt
     3481 acacgaggac ttcagaaaga cgtgcgggtc cgtataaggg gtggaatacc tggactatgg
     3541 cgaggaagaa tccagattga agtagacaat tctgctagta tcgaactttc agatggaccc
     3601 caagaggatg acattgagtt aatcgacata catcctcgtg tcaacgcaat tggtaaggta
     3661 tgggcaattg agttgagacc gggaattcaa ccagatggat ccaatcagac gacttggaga
     3721 atcaagatgg cagattcaag tggagtcctg tctgtgattg gattcaagat gaacgtgcca
     3781 gatcgggcta gaggaataca acgaggcgac ataattgcga taatcaatgg gcaacccgga
     3841 gagttcggcg gccagaaaca aatcaagtgt atccgagaca caagcctaat cctcatctca
     3901 tcttcggatg aatgtgcaga ttggcgtcta tagaatataa tactccggac aaataaggcg
     3961 ccgagagagg gatttgaacc
//
LOCUS       DUKB01000070            4512 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_164007, whole genome shotgun sequence.
ACCESSION   DUKB01000070 DUKB01000000
VERSION     DUKB01000070.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4512)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4512)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4512
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_164007"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            93..983
                     /locus_tag="HA345_02445"
     CDS             93..983
                     /locus_tag="HA345_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84248.1"
                     /translation="MSDGVRGQIGSFRRHPVLAWLRTVLVCLIALNAAAAVWLIVEFD
                     GQYTEGVPSPARIHALAGIDDQNTLIDISIENSSRFFVYQLIRDDVEPENGSEDPDDE
                     TTNDIPTDEEETDEDPVSQLDRARNWIKLSIGLLILIELLVAFVGINPWFRTIGFLAV
                     LVAFIIVLPLSFIGDNPNFASPGESPNSEVEEDDEEGGGDFVHEEVGFDLGIRLGGFE
                     VSMFYSGYDLGLVDEENRSEVRENPPEEGTRDAASFVKLDSSLSIRYGPAVVLLVILP
                     MLWIISPSGRSFQLQNDESE"
     gene            1075..2433
                     /locus_tag="HA345_02450"
     CDS             1075..2433
                     /locus_tag="HA345_02450"
                     /inference="COORDINATES: protein motif:HMM:NF013117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HIH84249.1"
                     /translation="MADDAADLVNQFNQFMDFLSNPNGGTDVILVKIVLSILGILLAL
                     YVMRRFILQRWEGIVAATDASWDDRIFNPLRVRIYAFTVIGGLNISVIWINTQSSDLT
                     ETTASLFNSSFIILASTLASIAVKFILPEILNRFQRQSAVTVSGGNPLLVFLLRAIIW
                     FGGLYLALSELGIDLLGVMAGLAVFSLIIGLAIQQTLGNIVNSFMLALDRPFEVGDRI
                     EVDGVMGTVVSIGILSTKLLTLKEELVVIPNNSLIDSTVINYARGGGDGVARRISVQM
                     DFGVAYDEDSAHVKQVMLRVARSCQYVLSEPRPRVMMTELGDYAKMYRLFIWIGDYND
                     EIISRDYLIERMDRAFEREGIVIPFPTAIELDKTPVDSDPEVAAKKAEDKNKRRRRAV
                     AAYRLEEARMRKEHSEITSELETLYEQVKTGKITGKALADMQDRIRELEQSLALDLEL
                     DD"
     gene            complement(2439..>4512)
                     /locus_tag="HA345_02455"
     CDS             complement(2439..>4512)
                     /locus_tag="HA345_02455"
                     /inference="COORDINATES: protein motif:HMM:NF015155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HIH84250.1"
                     /translation="DFILIPEDDRWSRIDVVTISMFIDNEPGAWGEVEGWESTYHLDE
                     PLVARAIIDKEIQNWTIDLENDGIAIAGEDAEISGISFARFELDQNSAIGAQIGQLLG
                     MSVILLSLILLTQFRTGRDTALVLFTTILGILGTYGISGILKLTFNAAMNSIPILLLA
                     IGVDYGIHVVARYREVLREEGERNSQDCETLRDFPKEIRVQAIRSGAILTSGALLIAI
                     FTDMVGFLSFRFSDQKFLVDFGTVIAIGLFMIYFLSITMLPALLRLIPPAKLNLRKAA
                     NVEPGRIGYWFGSLTKRPAAVLLAALALSIPMGYAVTTLEVGFDTRDQLDDSIPVVED
                     FLVLFDRYDAAPAPIYVRYDSSIALFSSEGWSSISTLESTVNSTPDAADVSSIRSTLE
                     SAATNDPSIAILLSSVQSDPAVESHWTNLSTWALTNETGRELTSRYMPDSGDETVIQF
                     STATLDWSDTVAFEASLVENLNNAGVEGEIGVAGRPLVLAQVTEGVASAAVISTVVVA
                     GVILLMLIGLQTAEKRDLKRGSITGVFMWIPLGAVVIWVYGLMGLLGYELNAQTVTIG
                     ALTLGLGVDYAVHYAHRYEEEREANPNGSPEEWVARTTVTTGRAMAGAAITTAGGFAV
                     LNLSALVPLRLFGQVFLVAITLALISSLILLPVLLSMRPGEEQGKPYLNAPIQQYIHE
                     INLPDESE"
BASE COUNT         1242 a         1099 c         1054 g         1117 t
ORIGIN      
        1 tccgggcttg ctaccatagc ggtccttgcg cttgccggca tcgttgtcgc acagcgtaac
       61 cgagatgaag aatgaagaag cccgacacac acatgagtga cggcgtcagg ggccaaatcg
      121 gttcctttcg ccgccaccca gtgttggctt ggctccgtac tgtcctagtt tgcttgatag
      181 cactcaatgc agctgcagca gtatggctga ttgtcgaatt tgatggacag tacaccgaag
      241 gtgtgccatc accagcgaga atccatgcat tagcaggtat cgatgatcag aatacattga
      301 ttgacatcag tatcgagaac agtagtcgat tcttcgtcta ccaactaatc cgcgacgacg
      361 ttgaaccaga gaatggaagc gaggatccag atgatgaaac tacgaatgat ataccaacgg
      421 atgaagagga aacagatgag gatcctgtaa gtcagttaga tcgggcaaga aattggatta
      481 aactctcgat tgggctgctg attctcatcg aattattggt cgcctttgtt ggaattaatc
      541 catggttcag gaccatcggt ttcctcgccg tattagtggc gttcatcatc gttctaccac
      601 tctcattcat cggagataac ccgaactttg caagtccagg agagagtccg aactcagagg
      661 ttgaggaaga cgatgaggag ggaggtggtg actttgttca tgaggaggtt ggtttcgacc
      721 ttggaatacg tctcggaggt ttcgaagtga gtatgttcta ctctggatat gatttggggc
      781 tcgtagacga agagaaccga tcagaagtgc gcgagaatcc gcctgaagaa ggtacacgag
      841 acgcagcatc cttcgtcaaa ctcgattcat ccctatctat ccgatatgga ccggcagtag
      901 tgcttctggt aatcttaccc atgctctgga taatatcgcc gtccggtcgt tcattccaac
      961 tccaaaatga tgaatctgaa taattctatt tttcatcaaa tttgtttgtt atgaagcacg
     1021 ctgtgctggg aagcacccat atacacccga tgacgcgcca gaggatgaag acgtatggct
     1081 gacgatgcgg ctgaccttgt gaatcagttc aatcagttca tggatttcct ctcaaatcca
     1141 aatggtggaa ccgacgtaat tctggtaaaa attgtcctat ctatcctagg catcctactc
     1201 gcgctctatg taatgaggcg cttcattcta caacgttggg aaggcatcgt tgctgcaacc
     1261 gatgcatctt gggacgatcg tatattcaat ccactcagag tcagaatcta tgcattcacg
     1321 gtcatcggtg ggctaaatat cagcgtcatc tggatcaata cgcaaagctc agaccttaca
     1381 gaaactactg catctctttt caattcatca ttcattatcc tcgcatctac actcgcaagc
     1441 attgctgtca aattcattct ccctgagata ctcaatcggt tccaaaggca atccgcagtc
     1501 accgtatctg gtggaaaccc actccttgtc ttcctcctcc gtgctatcat ctggtttgga
     1561 ggactctatc ttgccctttc ggagctaggc atagacctcc tcggtgtgat ggcaggtttg
     1621 gctgtattct ccttaattat cggtctcgca atccaacaga cattgggtaa tattgtcaac
     1681 tcgttcatgc tagcattaga ccggcccttt gaggttggag accgaattga agtcgatgga
     1741 gtcatgggta cagtggtatc aattggtatt ttgtcgacaa agttactcac cctcaaagaa
     1801 gaactcgtcg tcatcccaaa caacagcctc attgattcta cagtaatcaa ttacgctcgt
     1861 ggaggtggcg atggtgttgc acgacgtatt tcagtacaga tggacttcgg tgtagcctat
     1921 gacgaagatt ctgcacatgt gaagcaggtt atgctccgcg ttgctcgctc ctgccaatat
     1981 gttctatcag aaccacggcc ccgagtgatg atgactgaac ttggcgacta cgccaagatg
     2041 tatcgactat tcatctggat tggcgactat aatgacgaga ttatatcacg tgattatctc
     2101 attgagcgta tggatcgcgc gtttgagcgt gaaggaatag taattccatt cccaacggca
     2161 attgaactcg acaaaacccc tgtggattcc gacccagagg tcgctgctaa gaaggctgag
     2221 gacaagaata agagacgccg ccgagccgtt gctgcctatc gtcttgaaga ggcacgcatg
     2281 cgcaaggaac actccgagat tacatcagaa ctcgaaactc tctatgagca ggtcaagaca
     2341 ggtaagatca ctggcaaggc ccttgcagac atgcaagatc gtattcgaga acttgagcaa
     2401 tctctggctc ttgacttaga gttggacgac tgattcaatc actcggactc atctggcaga
     2461 ttgatttcgt gaatatactg ttgaatcggt gcattcaggt agggtttacc ttgttcctca
     2521 cctggcctca ttgaaagaag cacaggcaac aaaatgaggc tagaaatcaa agcaagagta
     2581 atcgctacaa ggaatacttg accaaacaga cgcaacggaa ccagcgctga aagattgagc
     2641 accgcgaaac cgcctgcagt agtgatggct gctcctgcca tggcacgccc agttgtaacc
     2701 gtagttcgag ccacccattc ctcaggtgac ccattcggat tcgcttcacg ttcctcctcg
     2761 taacgatgag cgtagtggac agcgtagtcc acaccaagtc caagggtcaa tgcaccaatt
     2821 gtcacagtct gtgcgttcaa ttcgtatcct agaagaccca tcagaccgta gacccaaatg
     2881 acgacagccc ccaacgggat ccacataaac acgcccgtga ttgaaccacg tttcaggtcc
     2941 ctcttctccg ccgtttgtaa tccgataagc atcagaagaa tcacacctgc tacgacgact
     3001 gtcgaaatta ctgcagccga tgctacgcct tcggtgacct gagcaagcac taggggtcgt
     3061 ccagcaacgc caatttcacc ctctacaccg gcattgttca ggttctcaac aagtgatgct
     3121 tcgaatgcta ccgtgtcact ccaatctagt gtagctgtcg aaaactgaat gactgtctca
     3181 tcccccgaat caggcatgta acgtgatgtg agttcacggc cggtctcatt ggtaagggcc
     3241 catgtcgata gattcgtcca atgagactct acggcagggt cagattggac agaagagaga
     3301 agaattgcaa ttgatggatc gtttgtagcg gctgattcaa gcgtggaacg aattgaagaa
     3361 acatccgctg catcaggagt agaattaact gtcgattcca atgtagaaat tgaagaccat
     3421 ccctcggaag aaaacaaagc gatagaagaa tcataacgca cgtaaattgg tgcaggtgct
     3481 gcgtcgtatc tatcgaatag aacgaggaaa tcctccacca ccggaatact atcatctaac
     3541 tgatcacgag tatcgaaacc aacctccaaa gtggtgacgg cgtaacccat aggaatggat
     3601 aatgccagtg ctgcaagaag gacggcagct ggcctcttag taagggagcc gaaccagtag
     3661 cctatccgtc ctggttccac attggctgct tttctaagat tcaacttcgc aggcggtatt
     3721 aaccgaagca aagcggggag cattgtgatc gacaggaagt atatcataaa caggccaatc
     3781 gcgatgacgg ttccaaaatc aacgaggaac ttctgatctg agaatcggaa ggaaaggaaa
     3841 cccaccatat cggtaaaaat tgcaataagg agagcacccg aagtgagaat tgctccactt
     3901 cgtatcgctt ggacacgaat ctccttcggg aagtcacgaa gagtctcaca atcctgtgaa
     3961 tttctctcac cctcctctcg gagaacctct cggtaacggg caactacgtg aatcccataa
     4021 tccacaccaa tagcaagcag aagaattggg atagaattca tggcggcatt gaatgtcaat
     4081 ttcagaatac cgctgattcc atatgtccca agaatcccaa gaattgttgt aaagagaacc
     4141 aaagcagtgt ctcgacccgt tcggaactgt gtcagtagga tcagtgagag aagtatcact
     4201 gacataccca gtagttgccc aatttgtgct ccgattgcgg aattctgatc taattcaaag
     4261 cgagcaaaag aaattcctga aatttcagcg tcttctcctg caatagcaat tccatcattt
     4321 tcaagatcga tggtccaatt ctgaatctct ttgtcgatga ttgcgcgcgc cacaagtggc
     4381 tcatccagat gatatgtgga ttcccaacct tcgacttcac cccatgcacc tggctcatta
     4441 tcgatgaaca tcgatatcgt aaccacatca attctagacc aacgatcgtc ctctggaatc
     4501 aagataaaat ca
//
LOCUS       DUKB01000071            5494 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_110142, whole genome shotgun sequence.
ACCESSION   DUKB01000071 DUKB01000000
VERSION     DUKB01000071.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5494)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5494)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_110142"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2331
                     /locus_tag="HA345_02460"
     CDS             <1..2331
                     /locus_tag="HA345_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84251.1"
                     /translation="STAGTFSNPGLNAKLASGKVTHSTISARNWSVDWTAPVAGTGTV
                     TISGAGNAVDGNNQQSNDAWNTYSIQILEATSQNSAPTASNLQVTPAIPTVLTGLTLI
                     YIYDDAEGDSESGTTIEWFRDGVSVPEVANSHTVSGSILSRGEIWSVVVTPSDGINQG
                     TSQNLDSVVISNAAPTADSGVIIPSSPSQSDNLSVQYTFDDADLDSESGTIIRWYLDG
                     VHIPELDNSSTVSRLYTRTGDQWTASVNPSDGLTYGSSSNVTVLIGSSNSAPSLVSLT
                     LDPVSPISTADLHLTYIYNDVDGDDISFTEIEWSVNGVHAPEHDDSMTIDAFHTSKGE
                     IWTVRVRATDGVDISPWTDSSPRTIMNAPPKLLSFSLGPEDATTISQLGVEYTWSDPD
                     GDPLGGVHVHWFLDGERIIDHEDLPTIASAHTMRGQDWQAEIVLEDSDGATSTDHVAP
                     APNHRSNILTIGNALPSIVFNASSSAIGQLDALNPLELNLEMEDSDGDLVVASISWIR
                     DGFRVSSLDNETLVPIQWLTVGQTWVVIVIADDGQGEVVEIVAPELVIGNLPPIASFS
                     GDENALVDSITILDGSDSIDSDGDIVAWFWTIGENTYSGKEMAYVFDSEPTSVNLTVL
                     DSDGGQSSIERVVQATLGATIIDLSVTKGAESIQLEWEWSGEPTEFHVWRSSKMIQDR
                     QDFASAVLIVTTNETTYFDPFQLAGDYYYTVTVDIAGVENQRIVSSNSESLQLTTQDV
                     ILNQDETSNLASALVVSWIIISLLITGFSFIFLRRP"
     gene            2334..3320
                     /locus_tag="HA345_02465"
     CDS             2334..3320
                     /locus_tag="HA345_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84252.1"
                     /translation="MRIIRVFTVILLLGLLMVPVFEANPGGNGDSTRDFACGGSCHAD
                     PDLSAPSSAQIVLVADRNETFVGGPLTVTATITGMELSDSRLVGVFLTVATFGADDSP
                     DHAGWVIASDPNGGTSNYIERHVLDANRGVEVSWALSAPMDESSHTFHIGVHHGGDGI
                     ARLASTEASGGINIEVGPIPENFPQVDASWQPPTMRGLGEETMIETILLNVTNARLEW
                     RVSGSLQTNVIGTTEEGNVWNATLPAALGPVIIEYRWLLSNDDHETTTAWMTLSAEDT
                     SSIDVNPARILMIALAMSTAGLLIGIQRRLAISLVDSEISEYPERDSKGGNL"
     gene            3320..3925
                     /locus_tag="HA345_02470"
     CDS             3320..3925
                     /locus_tag="HA345_02470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84253.1"
                     /translation="MVSPAVFHVISTELLIGSFAVSTLATLVCSAFSILPGLSSHLKS
                     KFGSTLDSAAYFAAIFGMFTIPAAIITGYTTSESMNSLGAMSVNKMLLSGLCIGFWSS
                     LISGRRMCGSRLWEHRGLAALQGGIALAGFGTVVMLGSIGGQLGRGESALDLLPFKFV
                     MDVAPTIELELAIGLLLLSMIILVVSLKLIDRPVISNLSNP"
     gene            4256..>5494
                     /locus_tag="HA345_02475"
     CDS             4256..>5494
                     /locus_tag="HA345_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012126928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84254.1"
                     /translation="MSVSVDSSGRSATHTTNSYRSWSFDWTAPSSGSGTTSVEIAVLT
                     ANNQNGNNGDSWTSTSVSIPEIPPANSAPSATNVEINPNPNAGVGVDLVAQYTYSDPD
                     GDPETGTEIRWHKNGALHSGFDGRTSIYASETSIGQKWKFEVRPYDGTDYGTLVMSPE
                     VTIVDMDSDGDGVYDTEDAFPTDPNEDTDSDGDGVGDNADAFPTDATETSDQDSDGVG
                     DNADVFPNDPNETTDSDEDGVGDNGDAFPNDATETTDTDGDGVGNNADAFPIDPNETT
                     DTDGDGVGDNGDAFPTDATETVDTDADGVGDNADVFPTNASETVDTDGDGLGDNADEF
                     PTNPAETKDTDVDGVGDNADVFPTDANETADSDSDGVGDNGDLYPLDPSESADSDGDG
                     VGDNADVFPTDATETLDSDSD"
BASE COUNT         1376 a         1270 c         1350 g         1498 t
ORIGIN      
        1 tccactgcgg gaaccttctc caatcccggt ctgaatgcga aactcgcttc agggaaagtc
       61 actcattcca ctatatccgc aaggaattgg agcgttgatt ggaccgctcc ggttgcgggc
      121 acgggcactg tcaccatcag cggagctggt aatgcagtag atggtaataa tcagcaatcc
      181 aacgatgcat ggaacactta cagcatccaa atccttgaag cgacctcaca gaattcagcc
      241 ccgacggcat ctaatctaca ggtcacacct gccataccaa cagttctcac aggtcttact
      301 ttgatttaca tatatgatga tgcggagggc gattctgaat ctggaaccac gattgaatgg
      361 ttccgtgatg gagtatccgt cccagaggtt gcaaattcac atacagtatc tggatctatc
      421 ctgtctcgag gagagatatg gagtgttgtc gtgacaccct ctgatgggat aaatcagggc
      481 acctcgcaga accttgattc ggttgtcatt agcaatgctg ctccgacagc ggattcggga
      541 gttatcattc caagctcccc ctctcaaagt gataatctaa gtgtacagta cacgtttgac
      601 gatgcagacc tcgattctga atcaggaaca atcatccgtt ggtatttgga tggagttcat
      661 attcccgaac tcgacaattc ctcgacagta tctcggttgt atactcggac tggagaccaa
      721 tggacagcgt ctgtgaatcc ttctgatggc ctcacatacg gctcttcctc aaatgtgacc
      781 gtattgatcg gctcatcgaa ttctgcacct tcgcttgttt cactgacatt agatccggtt
      841 tcccccatct ctacggcgga tctgcatctt acttacatct acaacgatgt agatggtgac
      901 gatatttcct tcaccgagat tgaatggagt gtcaatggcg ttcatgcacc agaacatgac
      961 gattccatga caatcgatgc attccataca tcaaagggtg aaatctggac tgtgcgagtt
     1021 cgagcaactg atggtgtaga tatatctcct tggacagatt cttctccgcg tacaatcatg
     1081 aatgctccgc ctaaactgct gagtttttct cttggcccag aagatgcaac tacaatttct
     1141 caacttggag tggaatatac ttggtcagac cctgacggcg atccccttgg tggcgttcac
     1201 gtacattggt tccttgatgg tgaacgtatt attgatcacg aggatctacc gactattgct
     1261 tctgctcata ctatgcgcgg tcaggattgg caggctgaga tcgtgctcga ggattccgat
     1321 ggggcaacca gcacagatca tgttgcacct gctcctaatc atcgctcgaa tatattgacg
     1381 atcggaaacg cactacctag catagttttc aacgcctcat catcagcaat cggtcaactc
     1441 gatgctctta atccattgga acttaatctt gagatggagg actctgatgg agatttagtg
     1501 gtggcaagta tttcttggat tagggacggt ttccgtgtga gttcccttga caatgagaca
     1561 ttagttccga ttcaatggct cactgtaggt caaacttggg tagtcattgt gattgcggat
     1621 gatggtcagg gcgaagtagt cgagatagtc gcacccgaat tggtgattgg taatcttccc
     1681 ccaatagcat cgttctccgg agacgagaac gcattggtcg attccatcac gattctcgat
     1741 ggatcggatt ctattgattc agatggcgat attgttgcat ggttctggac catcggagaa
     1801 aatacttatt cgggtaaaga aatggcatac gtcttcgatt ctgaaccaac atcagtcaac
     1861 ctcaccgtgt tggattcaga tggaggtcag tcatcgattg agagagttgt ccaagctact
     1921 cttggagcga caatcatcga cctatctgtg actaaaggtg ctgaatcaat ccagttggaa
     1981 tgggaatggt ctggcgaacc cacggaattt catgtttggc gttcttcgaa gatgattcaa
     2041 gatcgtcaag atttcgcgtc ggcagtacta atcgtgacca caaacgaaac aacgtacttt
     2101 gaccccttcc aattagcagg cgattattac tacacggtca cagtagatat tgcaggtgta
     2161 gagaatcaac ggatagtatc ttcaaattct gaatcgttac aacttacgac acaagatgtc
     2221 attctgaatc aggatgaaac cagtaatctt gcatctgccc ttgttgtcag ttggattatc
     2281 atctcattac tcatcactgg attttcgttt atcttcctaa ggaggccgtg ataatgagaa
     2341 tcattcgtgt tttcactgtg attttactcc ttggtctttt gatggtacct gttttcgaag
     2401 ctaatcctgg tggaaatgga gattctactc gtgactttgc ttgtggtggt tcctgccatg
     2461 ctgatccaga cctgtcggcg ccttcatctg ctcaaattgt acttgtcgca gatcgtaacg
     2521 aaacctttgt cggaggtcca ctcacggtga cggcgactat tactgggatg gaactctccg
     2581 attcaaggct cgtcggggtc tttcttacag tagccacttt tggtgctgat gatagtccag
     2641 atcatgcagg ttgggtcatc gcatcggatc cgaatggtgg aacgtcgaat tacatcgaga
     2701 gacatgtact ggatgctaat cggggagttg aggtatcttg ggccctgtct gcccctatgg
     2761 atgaatccag ccatactttc cacatcggtg tacatcatgg aggcgatgga atagcacgtc
     2821 ttgcttctac cgaggcttct ggtggaatca acattgaggt gggcccaata cctgagaact
     2881 tcccccaagt cgatgcatca tggcaacctc ctactatgcg tggattaggt gaggagacaa
     2941 tgattgaaac aatactcctg aatgtcacaa atgctcgtct cgaatggaga gtatctgggt
     3001 cattacagac caatgtcatc gggaccacgg aagaaggcaa tgtttggaat gccacacttc
     3061 ctgctgcttt gggtccggtg ataatcgaat accgctggct tctctccaac gatgatcacg
     3121 agactacaac ggcgtggatg actctaagcg cagaggacac ctcttcaatt gacgtgaatc
     3181 ctgctcgaat tctgatgatt gcgttagcta tgtcgacagc aggtcttctc attgggattc
     3241 aacgtagatt agccatatct ttggtcgact ctgaaatctc cgagtatcca gaaagagatt
     3301 ccaaaggggg taatttgtga tggtttcccc agcggttttc catgtaatct ccacagaact
     3361 tctcatcggt tcgtttgccg tatcgactct tgcgactttg gtttgttctg cgttctcaat
     3421 cctccctgga ctttcttcgc atctcaaatc gaaatttggc tcaaccttgg actctgcagc
     3481 atactttgct gctatctttg ggatgttcac catacctgct gcaatcatca cagggtacac
     3541 gacgtctgaa tcaatgaatt ccttgggtgc catgtcagtg aacaaaatgc tcctgagtgg
     3601 actctgcatt ggattctggt cttctctgat ttctggtcga agaatgtgcg gttctcgact
     3661 ttgggaacac cgtggtctcg cagctctaca gggaggtatt gcattggctg gatttggaac
     3721 agtcgtcatg cttggctcta ttggtgggca acttggtcga ggagaatcag ctcttgatct
     3781 cttaccgttc aagttcgtta tggatgtagc accaacaatc gaactggaac tagcaattgg
     3841 tttgctttta ctctcaatga ttatcttagt tgtctcactc aaattgattg atcgtcctgt
     3901 aatttccaat ctgtctaatc cttgaaccaa ttgcattgaa tatgatggga ttaattttgg
     3961 atttatgcag agtcctcgac gagccatatt cattcttgtt actttgatgg taatggtgac
     4021 cattccagcc attgaaggaa attcaggtgg caagcacaac caagctggca atggatgttc
     4081 atgtcactac aatagcggta gcgcaccgac tctcagtgag aatttccctt cgacctatac
     4141 aggagggcaa acatacaaca ttcaaatttc tgtttcggga ggcgtttcag gaagcgccgg
     4201 cggattcaac gttgttgtcg acaaaggtac gctttcaatt cctggcgccg gtatcatgtc
     4261 cgtctcggtg gacagttctg gccgatctgc tactcatacg acgaattcct accgttcttg
     4321 gtcgtttgat tggaccgctc cctcctccgg aagtggaaca acaagtgtcg aaatcgcagt
     4381 tctaactgca aataaccaga atggaaacaa cggggattct tggacttcaa cttcggtctc
     4441 tattcctgag attcctccag cgaattcagc tccaagtgct actaatgtgg aaatcaaccc
     4501 caatccaaat gcaggagtgg gagtggatct tgttgctcaa tacacgtata gtgatccaga
     4561 cggcgatcca gaaacgggaa ctgaaattcg ttggcacaag aatggcgccc tgcatagcgg
     4621 tttcgatgga aggactagta tttacgcatc cgagacatcg attggacaga agtggaagtt
     4681 tgaggtcagg ccttacgatg gcacggatta tggaactctg gtaatgagtc cagaggtgac
     4741 cattgtggat atggattccg atggcgatgg cgtctatgat accgaagacg ccttcccgac
     4801 tgatcccaat gaggatacgg atagtgatgg cgatggtgtt ggtgacaatg ccgatgcctt
     4861 ccctaccgat gccactgaga caagcgatca ggattccgat ggtgtaggtg acaatgccga
     4921 tgtgttcccg aacgatccga atgaaaccac ggatagcgat gaagacggcg ttggagacaa
     4981 tggtgacgcc ttcccgaatg atgctactga gacgacggac actgatggtg acggtgtggg
     5041 caacaatgca gatgcattcc caatagaccc gaatgaaacc acagatactg atggagacgg
     5101 tgtaggcgat aacggcgatg ccttccccac cgatgctact gaaacggttg acaccgatgc
     5161 agacggtgtc ggcgacaatg cagacgtatt tcctacgaat gcaagtgaaa ccgtcgatac
     5221 tgatggagac ggtctaggtg acaatgcaga cgagtttcca accaatcctg cagagactaa
     5281 agacacggac gtagatggtg ttggtgacaa cgctgacgtg ttccccactg atgcgaacga
     5341 aaccgcagat agtgactctg acggtgtagg cgacaacggt gacctgtacc cgttagatcc
     5401 ctcggaaagt gcagattccg acggagatgg agttggagat aatgcggatg tcttccctac
     5461 ggatgctact gagaccttgg atagtgattc agat
//
LOCUS       DUKB01000072            2947 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_355218, whole genome shotgun sequence.
ACCESSION   DUKB01000072 DUKB01000000
VERSION     DUKB01000072.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_355218"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..803
                     /locus_tag="HA345_02480"
     CDS             <1..803
                     /locus_tag="HA345_02480"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF015983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HIH84255.1"
                     /translation="WGRGTATFMVAGEECTRGCRFCAVGTIRTPPPLDPDEPQRLADA
                     VKDMALNYVVITVVNRDDLPDGGAAHYRACLDAIHEVRPDIGLELLCSDLDGNTDALA
                     TLLDGAPLDVFAHNVECVERLDPIVRDPRATFSQSKMILEEATRLRPDILTKTSIMVG
                     IGETDEEVTSTMAELRRVGVDLITIGQYLQPTDRHLPVDRFPVPERYAEWDAEARNMG
                     YRGVACGPLVRSSFRAGLLRDEANGAAPAVTRSSTNSAISFLKPKSTS"
     gene            849..2087
                     /locus_tag="HA345_02485"
     CDS             849..2087
                     /locus_tag="HA345_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019962255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HIH84256.1"
                     /translation="MSDEIPLATAEPFRVPTAPCRPGDESVFAPWTWTPEDLHLLNID
                     CSAEESHDHAYGLLRVLGDNDKASGAWNPELDEDTLKMGLEHMLRLRIFDERMMKLQR
                     TGKLSFYMRSYGEEAIAIAQTMALEMHDWVFPSYRQPGAQFVRNRDMVSMMNHCIGNE
                     EDNVKGRQMPVHYTYREGHFISISSPVGTQFSQAVGVAMASAYKGDDQVTITWLGDGT
                     SAQGDYHYGINFASVYKPPVILCVVNNQFAISTHANMATGGPNFASRGLPYGIPSIRV
                     DGNDFLALYSVTKWARDRASAGHGPTHLEIYTYRAGAHSSSDDPSRYRPRDDHLAWPG
                     GDPIERLKAHMIDAGIWSEDAHTEMTERIDSEVVSAYKEATSYGDLANGPYPPSSTIF
                     TEVYETVPWHVQEQREELGK"
     gene            2093..>2947
                     /locus_tag="HA345_02490"
     CDS             2093..>2947
                     /locus_tag="HA345_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011951628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HIH84257.1"
                     /translation="MVEMNMIEALNSALDDLMNRDPNVLVFGEDVGYFGGVFRVTDGL
                     QDKHGAHRVFDTPLAEGGIASMAMGMGLNGLRPVAEIQFADYIFPAYDQIVNEIAKIR
                     HRSGGEFWTPVTFRTPAGGGIRGGHHHSQSPESQFTHTPGLKVVYCSTPKNAKGLLTS
                     AVECNDPVIFFEPKRCYRGPFYGDPHNVPTWKGHPDAEVPEGEFRTPLEKANIVREGT
                     DCTVIAWGAMVHVSQQAIEESGISCELIDLQTLVPWDRDTVVDSIRKTGRCVIVHEAP
                     KTSGFGAEM"
BASE COUNT          762 a          798 c          746 g          641 t
ORIGIN      
        1 gctggggcag aggcactgct accttcatgg ttgctggcga ggaatgcacc cgtggctgtc
       61 gcttctgtgc agtaggcacc atccggaccc ctcctccact cgacccagat gagccacaac
      121 gtttggcgga cgccgtcaaa gacatggctc tcaattatgt cgtcatcact gtcgtgaatc
      181 gtgatgacct gcccgatgga ggagcagctc attaccgggc ctgtctcgat gcgatccacg
      241 aagttcgccc agacatcggt cttgagttac tatgtagcga ccttgatggg aacaccgatg
      301 cattagcgac attgcttgac ggagcccccc tcgatgtatt cgcccacaac gtcgaatgtg
      361 tcgagcgatt agaccccatt gtccgcgacc cacgagcaac gttctcccaa tcaaagatga
      421 ttcttgagga agcaacgcgg cttaggccag atatacttac caaaaccagc atcatggttg
      481 gaatcgggga aactgatgaa gaagtcacga gtactatggc tgaactccgc agagtaggag
      541 ttgatttgat cacaatagga caatacctcc aacctacaga taggcacctc cctgtagatc
      601 gattccccgt acctgaacgg tatgctgaat gggatgctga agcccgcaat atgggctacc
      661 gaggtgtcgc atgtgggcca ctagtacgct cctcattcag agctggactt ctacgtgatg
      721 aggcaaatgg agccgctccc gcagtcacca gatcatcgac caactctgca atctcattcc
      781 tcaagccgaa gagcacctcg tgagtcacat agcggaatac tattaccact ccttcacaag
      841 caaggctcat gtccgacgag attccgctgg caacggcaga accgtttcgt gtcccaacgg
      901 caccctgccg acccggagat gaatccgtat ttgccccatg gacctggact ccagaggacc
      961 tccatctact caatatcgac tgctctgccg aggaatctca cgaccatgct tacggactcc
     1021 ttcgagttct aggagataat gacaaggcat ccggtgcttg gaaccctgaa ctcgatgaag
     1081 atactctcaa aatggggctc gaacacatgc ttcgtcttcg aatcttcgat gagagaatga
     1141 tgaagttgca acgaactgga aaactctcat tctacatgcg gtcatacgga gaagaggcaa
     1201 tcgctatcgc tcaaacgatg gcgcttgaaa tgcacgactg ggtgttcccc tcgtatcgcc
     1261 aaccgggtgc acaattcgta cggaatcgtg acatggtaag catgatgaat cactgtattg
     1321 gaaatgagga agacaatgtc aaagggcgcc agatgccagt acactacacc tatcgcgaag
     1381 ggcatttcat ctcaatctca agtccagtag gtacacagtt cagccaagcc gttggcgtag
     1441 ctatggcctc agcctacaag ggtgacgatc aagttacgat cacttggctt ggagatggca
     1501 ccagcgcgca aggtgactac cactacggaa ttaacttcgc atcagtatac aaaccacccg
     1561 ttatcctctg tgtagtcaac aaccagtttg cgatttccac tcacgcaaac atggcaacag
     1621 gagggccaaa cttcgcttcc cgtggacttc cttacggaat cccatcaatc cgtgtggatg
     1681 gcaacgattt ccttgccctc tactctgtca caaagtgggc cagagatcgg gcctcagccg
     1741 gtcatggacc gactcatctc gaaatctaca cgtaccgagc aggcgcccac tccagcagcg
     1801 atgacccatc caggtatcgg ccaagagatg accaccttgc ttggcccggg ggagatccta
     1861 tcgagcgtct caaagcacac atgattgatg ctggaatatg gtcggaagat gcgcacactg
     1921 agatgactga acggatagat tcagaggtag tttcagcata caaggaagcc acatcctatg
     1981 gcgatcttgc taacggaccc tatcctccat catccaccat cttcacagag gtctacgaaa
     2041 ccgtaccatg gcatgttcag gaacagagag aggagcttgg gaagtgaggg atatggtcga
     2101 gatgaacatg atcgaagccc tcaattcggc tctagacgat ctgatgaata gagaccctaa
     2161 tgtgctcgtc ttcggggaag acgtaggcta tttcggaggt gtattccgag taacagatgg
     2221 cctccaagat aaacacggtg ctcaccgagt atttgacacg cctctagctg aaggtggcat
     2281 tgcctcgatg gcaatgggta tggggctcaa tggcctacgc ccagtcgcag agatacagtt
     2341 cgccgactac atcttccccg catacgacca aattgtgaat gagattgcaa agatacggca
     2401 ccgctcaggt ggagagttct ggactcctgt caccttccgc acaccggcgg gaggaggtat
     2461 ccgtggcggc catcaccatt ctcagtcacc tgaatctcag ttcacccaca cgcccggact
     2521 caaagtcgta tattgctcta cacccaagaa cgcaaaggga ttgttaacct cagctgtcga
     2581 atgcaatgac ccggtgattt tctttgagcc aaagcgatgc tatagggggc ctttctatgg
     2641 tgacccccac aacgtaccca cgtggaaagg acaccctgat gcagaggtcc cagaaggaga
     2701 attccggacc cccttagaaa aggcgaacat cgtgagagaa ggcactgact gcacagtcat
     2761 tgcttggggc gccatggtac atgtatctca acaggccatt gaggaaagtg gcatctcatg
     2821 cgagttaatc gatcttcaga ctctcgtacc gtgggatcga gatactgttg ttgattccat
     2881 tcgtaagacc ggacggtgcg tgattgtcca tgaggcacct aagacaagtg gattcggagc
     2941 agagatg
//
LOCUS       DUKB01000073            2666 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_91016, whole genome shotgun sequence.
ACCESSION   DUKB01000073 DUKB01000000
VERSION     DUKB01000073.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_91016"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="HA345_02495"
     CDS             complement(<1..475)
                     /locus_tag="HA345_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84258.1"
                     /translation="MDGEAHSGTSEMANLLERATLPILIITILMTAGFAIGFIDPPSF
                     NTDLTTFVPEDENDVIIETVDAQLTETGLPFYTHITRDDGGNVLSWDSILIQENALYE
                     LENQSSMQSNLIISNISAPGILQLALDESDASGTLSDYDSWGSFLNETVDESTTCT"
     gene            601..858
                     /locus_tag="HA345_02500"
     CDS             601..858
                     /locus_tag="HA345_02500"
                     /inference="COORDINATES: protein motif:HMM:NF025040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit L"
                     /protein_id="HIH84259.1"
                     /translation="MAMKVLKNEGGELRIRISGEDHTTLHVFRTHLNAHKDVDYCNYF
                     SAHPDLDDPELYIRANKGKDPVKILKSVVKDAGKDFSSLSL"
     gene            875..2272
                     /gene="truD"
                     /locus_tag="HA345_02505"
     CDS             875..2272
                     /gene="truD"
                     /locus_tag="HA345_02505"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HIH84260.1"
                     /translation="MDTDDLDTAAGLSRFATSGPGINGVLKMRAEDFRVEEIGRIPSL
                     DPKGRFTVIRVTLRDWETNRFVNRLASSLKISRNRIWFSGTKDKKAITTQLMVVDAQK
                     AAIQNVEIADVEIEIIGRTHQKVGMGAHHANRFTIVVRGCTDDDGSPLDARTVMSRAV
                     SIKEAMEESLGEGVFPNWVGSQRFGSLRPVTPIVGRHVIESDFEQAVSAYLGMSGLFE
                     DEASSNFRKMWREHGDAAACLEVVPNHLGYERSMLQSYVDHPDDHVKAFLTLPRNLQI
                     MMVHSVQSMAFNHVLAARLDAGLPLAEPVLGDIVTPLSAEGKIDVGKLASVDDTNLER
                     CIRNCRFRRLAVTGPLPGATSKSAVHAPGEIESKVLKDHDLDGLTWQVERIGRLSSNG
                     SRRAFASRFEEFSIEDAPILDADVLDSRWVAGPRTGEVWHPEGACLRFRFSLPPGTYA
                     TVLMREFMQAKASQY"
     gene            complement(2282..2560)
                     /locus_tag="HA345_02510"
     CDS             complement(2282..2560)
                     /locus_tag="HA345_02510"
                     /inference="COORDINATES: protein motif:HMM:NF012939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84261.1"
                     /translation="MGEVIVKYKVMLESDSMGRIDDVCKDIDSIDKEIGAIQFVEKKP
                     LAFGLMFIEVTAIIQDGEEFDNPLGNFEDLVKSFEGVTEIETLEMGRL"
BASE COUNT          652 a          627 c          670 g          717 t
ORIGIN      
        1 cggtacaggt ggtgctctca tctacagttt cattgagaaa agatccccat gaatcgtaat
       61 cactcaatgt gccacttgca tccgattcgt caagtgcgag ttggagaata ccaggtgctg
      121 agatgttgga tataatcaga ttactttgca tgcttgattg attttccaac tcatacagag
      181 cattctcttg tatcaaaatt gaatcccatg atagcacatt gcctccgtcg tctcgtgtga
      241 tgtgagtgta gaagggaagc ccggtctcag tcaactgtgc atcaacggtt tcgataatca
      301 catcgttttc atcttcaggg acgaaagtgg tgaggtctgt attgaatgat ggtgggtcaa
      361 taaatccgat tgcaaagcct gccgtcatga gaatcgtgat gatgagaatg ggaagcgtcg
      421 cacgttcgag aaggttcgcc atctctgatg ttccagagtg ggcctccccg tccatgaact
      481 cgacgagacc caatggggca taatcccaac ggcgcaagga ttgctatatt ccttgttcac
      541 tcatatgcag agtcattccc ggtggaagcc ctcaaaaagg ggactcatct cggcaacctc
      601 atggcaatga aggttctcaa gaatgaaggg ggcgaacttc gtattcgaat cagcggagaa
      661 gaccacacta ctctgcatgt attccgaact caccttaacg cccacaagga cgtcgattat
      721 tgcaattatt tcagtgccca tcctgacctc gatgaccccg agttgtacat ccgtgcaaac
      781 aagggtaaag accccgtcaa gatcctgaag tcagtcgtca aggacgccgg caaggacttc
      841 tcctccctct cgctgtgatg gaaccggtga ggctgtggac acggacgacc tagatactgc
      901 cgcaggcctg agtcgatttg ctacttccgg gccaggaatc aacggcgttc tcaagatgcg
      961 tgcggaggat ttccgcgtcg aggagattgg tcgaattcca tctctagatc cgaagggtcg
     1021 attcacggtg attcgtgtca ccttacgaga ttgggaaact aaccggtttg tgaatcgact
     1081 tgcgagttct ctgaagatct caagaaaccg catttggttt tctgggacga aggacaagaa
     1141 ggcaatcaca acccaactga tggttgtaga tgcccagaag gctgcaattc agaatgttga
     1201 gattgcagat gttgagattg agataattgg ccgcactcat cagaaggttg ggatgggggc
     1261 gcatcacgcc aatcgattca ctattgttgt acgcggttgt accgatgatg acggctctcc
     1321 gttagatgca cggaccgtaa tgtcacgtgc cgtttcaatc aaggaggcga tggaagaatc
     1381 tcttggcgaa ggtgtttttc caaactgggt tgggtctcag cgttttggtt cgttacgccc
     1441 agtcaccccc atcgtcggtc gccatgtaat tgagtcagat tttgaacagg cagtatcagc
     1501 atacttgggc atgtccggtc tatttgagga cgaggcgagc agtaatttcc gtaagatgtg
     1561 gcgtgagcat ggtgatgctg cagcttgcct agaggtcgtt cctaatcatc taggttacga
     1621 gcgatccatg ttgcagtcct atgttgatca tccagatgat catgtgaaag catttctgac
     1681 tcttccacgt aatctccaga ttatgatggt tcattctgtt caatctatgg cgttcaatca
     1741 cgtacttgct gctcgtcttg atgctggtct tcctctcgct gaaccggtat taggtgatat
     1801 tgtcactcca ctttccgcgg aaggaaaaat cgacgtcggt aagcttgctt ctgtggatga
     1861 tacgaatctt gaacgttgca ttagaaattg ccgtttccga cgtttagcag tcactggtcc
     1921 attacctggg gcgacatcga agtctgcagt acatgcgccc ggcgagattg aatccaaggt
     1981 cctcaaggat catgatctcg atggattgac atggcaggtc gagagaattg gccgattgtc
     2041 gagtaacgga agtcggcgtg cttttgcatc tcggtttgaa gagttcagca tcgaagatgc
     2101 ccctattctt gatgcggatg tgcttgattc acgttgggta gctggccctc gaaccggaga
     2161 agtatggcat cctgaaggtg cttgtctacg attcagattc agtctcccgc caggcacata
     2221 tgcaactgtg cttatgcgtg agtttatgca ggcaaaagcc tcgcagtact gatcgaagta
     2281 atcagagacg acccatttca agggtctcaa tttccgtgac accctcaaag gacttcacta
     2341 agtcttcaaa gttaccaaga ggattgtcga attcctcgcc atcttgaatg atagctgtga
     2401 cttctatgaa catgagtccg aaagcgagag gtttcttttc aacaaattga attgcgccaa
     2461 tctccttgtc tatggaatct atatccttgc aaacatcatc gatgcgaccc atcgaatctg
     2521 attctaacat gaccttgtac ttcacgatga cttcacccat gtggattcct cctttcaagg
     2581 accttggaac cggcattcag ggcagatgta tctgactccc tgattacggc atgcctcact
     2641 tcgaccaata tttcccttgc aggggt
//
LOCUS       DUKB01000074           12579 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_26242, whole genome shotgun sequence.
ACCESSION   DUKB01000074 DUKB01000000
VERSION     DUKB01000074.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12579)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12579)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12579
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_26242"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            55..441
                     /locus_tag="HA345_02515"
     CDS             55..441
                     /locus_tag="HA345_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84262.1"
                     /translation="MVQHFRSNALVTGWICTALGAAISITIPDAFGMMIAFPLGTAGI
                     VLLILGFRSDPEERVDIDSMRAWQPEEGPMREAGRVMYRIDTLLDPPIRTTIKCGGCG
                     KVEWVDGGKPPSYTCPHCSTTLWEEE"
     gene            481..1977
                     /locus_tag="HA345_02520"
     CDS             481..1977
                     /locus_tag="HA345_02520"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF003210.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HIH84263.1"
                     /translation="MGELGNNERRMLRAMLGDPQAIWSLDQLLEACEWTDQAHVAGAG
                     LALNEAGMVEIKESTSRMITLGEEGRKALNDGLLESRLFTWILNQPDDQRMVSTMSQS
                     FEKSESGPGVGLLKRLGIALERGAFALPDDTSEIETTLAERNEFIQTIGENGIDEGEL
                     DSEMVVAFRSRKSIIETNDTVTRTWQLSADGRDVDSESLTEKTQIVDLTPEMLQGDDW
                     REAEFKRYDVDLPAPTPAGGRPHPMQSLIQRIRSIFLEMGFTEIEGDFVRTAGWNMDS
                     LFIPQTHPARAMQDTFYLEDPEKLPIEDHWLDLWRKVHENGGDTGSTGWGGKFDREEA
                     KKGLLRTHTTVNTVKHLADKPNDACRVFGIGRVFRQEAIDKSHLPEFHQIEGIIHEPD
                     ASLPMLVTTLKTFYAKMGYPDVRVRPAYFPYTEPSLEIEVKWRGIWLELGGAGIFRPE
                     VTEPLGTEWPVCAWGMGLERLAMLVLGMNDIRELYQPDLLKLRSMPII"
     gene            2048..2527
                     /locus_tag="HA345_02525"
     CDS             2048..2527
                     /locus_tag="HA345_02525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84264.1"
                     /translation="MTNSDSPDIANENEVREVFSDRRWTIMGALLGTSTAILLVHSLE
                     PDKASSLQRDIGLGIIASTLPFMVVYCALHLYARENEERMLLSELHRLSNLSIVCQLI
                     AYGSMLGILTLWYGISEVVGPLIIAASAVAFLTVRYVLYTSTSASPGLSMFGQNSSQ"
     gene            complement(2521..3666)
                     /locus_tag="HA345_02530"
     CDS             complement(2521..3666)
                     /locus_tag="HA345_02530"
                     /inference="COORDINATES: protein motif:HMM:NF014667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HIH84265.1"
                     /translation="MKKIVAVLIVLSLGLVGCTRQGDNDDLDFNGTEYRNPLSVGDFT
                     LTDQNGQDVSLSDFEGKVVVVMFTYTHCPDICLAVENNMAYIDSKLDDNGIENNVVIL
                     SISIDPARDTVERLSEYTTDMGFDWPHLTSSNHSELQAVWDDWNVVVNNSHINSDHSS
                     HGDHSDHDGHSGHGDMVHKLGVVFPDNTTITYDVNYSSDMGSVHALNHSMNAFMQHDV
                     MHSVENDSVTSIAMNDAAYELYMWHEMDSGSHWMKASKNATESLLMQDSNHFAWVATD
                     ANASLLMDPTMDSESDHSDHSDHSDHSDHSDSDDVIIVEEPYLVGHGTVVFILDEESR
                     KRVAWTGDLSNRKNGEMEVDLFLEDLVTLVHGSSHSSDDSGHEHHNH"
     gene            complement(3715..4428)
                     /locus_tag="HA345_02535"
     CDS             complement(3715..4428)
                     /locus_tag="HA345_02535"
                     /inference="COORDINATES: protein motif:HMM:NF012787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HIH84266.1"
                     /translation="MATTMMFSGCIGWNEASSPFYGAEVEGSDVPPFALDSHDGAVFN
                     SSDLQGKVVIVGFIYTRCPDICPITSQNIAYVHSLVSAEHDDVAVVSITVDPWADDPA
                     TLAQYVVDQNLSWPHLTGPVEDMEPVWKAFGVGLTTYDDDSDADGVVDGFDICPDTPA
                     NEVIDHHGCGMDTQEGETDNATAGSGTSGRHALPGYWVDHMTGTVILDRNMQQRVFWG
                     DMDWNPDFVISDVKTLLAE"
     gene            complement(4452..5084)
                     /locus_tag="HA345_02540"
     CDS             complement(4452..5084)
                     /locus_tag="HA345_02540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84267.1"
                     /translation="MRLALALIFLIIVTPMAVSAHGADKMSVIVRGTRMDPDTVQMVQ
                     NDTVEFTSVNQSNRSVRMDFNNDGDHDDEHDFMCNLPSGAICSLEMNVTNYTGALYIF
                     EVLEEDGNIAFTLNLTLINDTHDPNTNITSPGSYSFGDDVDIDNDGVPDNVDMCVDTE
                     PSVEVLPIGDTFQGCDIDSDDNTLQISLAMISVGLIGVWLFVRSQQKGIE"
     gene            complement(5092..7032)
                     /locus_tag="HA345_02545"
     CDS             complement(5092..7032)
                     /locus_tag="HA345_02545"
                     /inference="COORDINATES: protein motif:HMM:NF019912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84268.1"
                     /translation="MARVDTALILCILMAMAPLSGCFGGDDVDDIEEYVWIDPVTEIE
                     DANHSHSDLFAHRLQTPNVRLIDYHNLNCDGNVKPPAELDNSAGRPCDPAFKNAAPTP
                     GDSSEIAIEGNFLEDCVKYPDGTGGCYAYVSSYNQFEILDISKPNNITLLSTYYAEIA
                     RIIDIKVTPDNNWVLVNHELTNSELDPIPNDDDANSGANRLDVIYVGNKNEPIKVAEW
                     NNPPAGFHNQDVHVYCDWDGATNPDEECSLFLFGADPYPEMTEGDSGTFYKGTQIFYV
                     PMGFESWLPTQTDEQQNSSREILRWGGYSPEPETTCGGSIFNHDNVYHEHPITGQKLL
                     YISYWGAGLRIVDVTNPPVVPDPEGISWPQDYEVGRWLGCPTADDGWYGPDGGGHAGM
                     SANEWLDQNLGNDNIHYAVPYDHLICKDVSQYVDQSLWPVECGTGPSDAVYGVNWRHY
                     TIIAPEYGSNTNHTGIVWTIDTTDPAMPFLVSKWKLPGQSILPDGTVHDNHYIPGGYI
                     FSPHNGDTGTNGHVYWTHYHAGNWLTDHSGIWDSIVWKDGTPAPELGWQGIETLGETE
                     TLGYYLPAGPEWVADPTNELGYDMADCWASCMIPFDWGLQYDPRGYVFISEMVSGVYV
                     VQFDEDKDPRFDYPPLWTPIEE"
     gene            complement(7075..8661)
                     /locus_tag="HA345_02550"
     CDS             complement(7075..8661)
                     /locus_tag="HA345_02550"
                     /inference="COORDINATES: protein motif:HMM:NF016289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HIH84269.1"
                     /translation="MSRIVSSILFCFLMLSAPLAGCFGSQEGGLPSSEDLQISGQLVG
                     GDWSVVTLSASIDLSVYIPYFVVDPGSLRAQNGTVLDLNAGDSQDVRWLLPPRNSVAM
                     LLIGEYTRTDWPVRAANESWLDWSLDASNGGSITTIPNEDNGTWNWLGAHDSDGGPVT
                     VVQFETVRPQRTDLTMDDGVDASAGWVDGRSVYEWVDFITDETPDPLDPADGAVGYLD
                     RWIGNGNPAYEDAITYFEGVLTGFGLRTEVHRFQSGTLWAANICGYKDGTTYPDEWLV
                     FGGHFDIAPYATPTSLIPGLEETGYGTRTGAYDNSAGSAMVLTTAGALADFDARRTMV
                     FCLWSSEEEGLWGSSAFADDLPSGVTVSNYLNLDMAGVNYPGNYALSVYLGPDGTGDT
                     IDQPGMFHLAEWIGADALDLGYQMERGSAEWASGGESPLWQQEYTDTVAIYESPTARS
                     DHDSFQQIGVATLGWNGVVDGFPCYHKTCDKLPTLEEYMETDNATGVANLAHSWDIVT
                     WWAVYSFLHMDQTPVPNELE"
     gene            complement(8710..10464)
                     /locus_tag="HA345_02555"
     CDS             complement(8710..10464)
                     /locus_tag="HA345_02555"
                     /inference="COORDINATES: protein motif:HMM:NF019912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84270.1"
                     /translation="MEGRMIAGYVIVALLGTVSLGAAVMAITAAGIESDDDSSGVTLF
                     DPLIQDVEGHDHRNGSQHNLSTPNVEALSFNPLTEPGNAEVQVADAPDGRRYAYIAGW
                     KEMHIVDVTDPRNTTVTGVYLDPNTQVLDVKYLEYNGREYIIVQNQLVDSGNADPNVG
                     EWGDPVQVTVTLVDVTDKANPTYVDSWYDADHPSGPHNLYTHMIDGEWYIFVANPDYD
                     DCDVGQGDACGGITIAHLNFAAYGDLPRIVKVGEAEVSWETTRGGWIYIHDMTVQTWP
                     GDDPEDPRYGRTYVYGAYWEAGLRIFDVSDVPHPNKDMAEYLFIGGACRLSWGTQAGC
                     NWRAPEVGQWMDFADLDDDGQPDSGTTGNENGGRSSYIHYAEPFDEMVDASHLGYPAG
                     KMHLTFLATEVLSTSIGTGMAYLLDTTEYTNDNGNLRFIPKLVHDWEIPYADDHFIPT
                     GEEWLLFSPHNADLHIFQTGTPNRPDQSHGGAWDARIYLSHYHAGLWVVDVESLLVAG
                     LDGTMNRTQVYSDSTVAFHLPNAGEGVILDSDYYDFGWVPFLWAAEYHEGYTYLSCIT
                     SGLYIVQLDIDKPYGPPA"
     gene            10540..11190
                     /locus_tag="HA345_02560"
     CDS             10540..11190
                     /locus_tag="HA345_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84271.1"
                     /translation="MRRGLMTAGLLLCMCLTAPTTTAHDPTTFTVIVGENGAVPANIT
                     GQVLFTNDSIWFRNVDNSENITHHLTIDMDGDGLYNGTEDISSGNLSSSCALDDNGTK
                     IDSTCEVIWKVALNASTGIIAGTFDYIDERSDGNMTSGRFVVNLDDHPANVGPDPNYS
                     LDVDEEQEEDVGESTGSDQQMLVVISMSAAIAAGAVLMLMMRPMPIVRLELTDESE"
     gene            11260..11333
                     /locus_tag="HA345_02565"
     tRNA            11260..11333
                     /locus_tag="HA345_02565"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11294..11296,aa:Ala,seq:tgc)
     gene            11411..11569
                     /locus_tag="HA345_02570"
     CDS             11411..11569
                     /locus_tag="HA345_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84272.1"
                     /translation="MPVEIAAALLNDETMEVVGNKVEEVARPFRIFRHGVLPIFIIGW
                     AVYFLWFM"
     gene            11650..12033
                     /locus_tag="HA345_02575"
     CDS             11650..12033
                     /locus_tag="HA345_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005958799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase
                     family protein"
                     /protein_id="HIH84273.1"
                     /translation="MDHPKQEHLSDEHGVDGSWETMMARVAKFHHKHDFANPENNGHD
                     MGYRIALMVEELGEFSAAITKGKPQEEAAEELADVLILTLGNALAMDIDLEDQFHKKM
                     DRIMQRPSRRGGMGIRVTEYTGEPE"
     assembly_gap    12064..12375
                     /estimated_length=312
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         3277 a         3080 c         2946 g         2964 t
ORIGIN      
        1 gtgtgggaag ggccatatcg gaagcatggt ccactttggg ccggaggtct tgacttggtc
       61 cagcatttcc ggtcgaatgc tctcgtaact ggttggattt gcactgcttt aggtgccgcg
      121 atttcaatca caatcccaga tgcattcggg atgatgatcg cattccctct aggcactgct
      181 ggcatcgtcc tacttatcct tggtttccgt tctgatccag aggaacgagt tgatattgat
      241 tcaatgcggg cttggcaacc agaagaggga cctatgcgcg aagcaggtcg tgtgatgtat
      301 cgaatcgata cactgctcga cccaccaatc cgaaccacaa tcaaatgcgg aggatgcggc
      361 aaggtggaat gggtcgatgg tggaaagccc ccatcctaca cctgcccaca ttgctctacc
      421 acactttggg aagaggaatg aagcgaagtg gtcaagaccg tgggcaggtt cccagaaatg
      481 atgggcgaac ttgggaacaa tgagcggagg atgctccggg cgatgctcgg ggaccctcag
      541 gccatctggt cactcgacca acttctcgaa gcctgcgaat ggactgatca ggcacacgtc
      601 gctggcgcgg gtctcgccct aaatgaggca gggatggttg aaatcaaaga atcaacatca
      661 cgaatgataa ctctcggtga agaaggcaga aaggcactga atgacggttt acttgaatca
      721 cgactcttca catggattct gaatcagcct gatgatcaga gaatggtttc taccatgtct
      781 caaagttttg agaaatcaga atcggggcct ggcgtgggcc ttctaaagcg gcttggtatc
      841 gctcttgagc gaggagcctt tgctctcccc gatgacacat ccgaaatcga aacaacactg
      901 gcagagagga atgaattcat ccaaaccatt ggcgaaaatg gaatcgacga aggtgaactt
      961 gattcagaga tggtagtggc tttccgttca cggaagagta tcatcgaaac caacgatact
     1021 gtcacgcgca cttggcaact ctcagctgat ggccgggatg ttgattcaga atcattgaca
     1081 gagaaaacac agattgttga cctaacgccc gagatgttac aaggtgatga ttggcgagag
     1141 gctgaattca agcgctacga tgtagattta ccagctccca cgcctgctgg aggacggccg
     1201 cacccgatgc aatctcttat ccaacgtatt cgttccatct tccttgagat ggggttcact
     1261 gaaattgaag gcgacttcgt aagaacagcc ggctggaaca tggattcgtt attcatccca
     1321 cagacacatc cagcacgtgc aatgcaggat acattctacc ttgaagaccc agagaagcta
     1381 ccaatcgagg atcattggtt ggacctgtgg cgcaaagtcc acgagaatgg gggggatact
     1441 ggaagcacag gttggggagg taaatttgat cgtgaggagg cgaagaaggg gttactccgc
     1501 acacacacga ctgtcaacac ggtgaagcat cttgctgaca aaccaaatga tgcctgtcga
     1561 gtattcggta tcggtcgagt attccgacaa gaggcaattg acaagtccca cctccctgag
     1621 ttccatcaaa tcgaggggat tatccacgaa cctgatgcga gccttccgat gcttgtaacc
     1681 acgctcaaga cattctacgc aaagatggga tatcccgatg ttagggtacg tccggcgtat
     1741 ttcccttaca ctgaaccctc tcttgaaatc gaagtcaagt ggaggggaat ctggttagaa
     1801 ctcggtggag caggcatatt ccgaccagag gtcacagaac ctctcggcac agaatggcct
     1861 gtctgcgctt ggggtatggg tctagaacgt ctcgctatgt tagtactcgg catgaacgat
     1921 attcgggaac tgtaccaacc tgatctgctc aaactccgtt cgatgccaat catctgattg
     1981 tagaatccct tgctgagtcg ttcagatagc gaagccttca tgttcagaaa gttgagcatt
     2041 tcatatcatg actaattctg attcgccaga tatcgcgaat gagaacgaag ttagagaggt
     2101 gttctccgat cgtcgttgga ccatcatggg ggcactgctt ggaacgagta ctgcgatact
     2161 cctagtgcac agcttagaac cagataaggc gtcgtctctc cagagagaca ttggcctagg
     2221 cataatcgca tccacacttc cgttcatggt agtatactgt gcgctccacc tgtatgctcg
     2281 tgagaatgaa gagcgaatgc tgctatctga attgcatcga ctaagtaacc tctccatagt
     2341 ttgccaactg attgcttacg ggtccatgct aggaatcctg actctctggt atgggatatc
     2401 cgaggttgtg ggaccactga ttattgctgc atcagctgtc gcattcctaa cagttcgcta
     2461 tgtcctctac acttcgacat cagcaagtcc tggactgagc atgttcggcc agaatagttc
     2521 tcagtgatta tgatgttcat gaccagaatc atcgctggag tgactacttc cgtgaactag
     2581 agtcacgagg tcctcgagga agagatcgac ttccatctca ccatttttcc tgttactgag
     2641 gtcacctgtc caagcaacgc gcttacggct ctcttcatcc aggatgaata ccactgtgcc
     2701 gtgtcctaca aggtatggtt cctcaactat gattacgtca tctgaatcag aatgatcgct
     2761 gtgatcagag tgatcgctat gatcagaatg atccgattcc gaatccatcg tcggatccat
     2821 caacaaggat gcattcgcat cggtagcgac ccaagcgaaa tgattcgaat cttgcatgag
     2881 aagcgattcc gtggcgttct tgctggcctt catccagtgc gaaccagaat ccatctcgtg
     2941 ccacatatag agctcgtatg cagcatcatt catcgcgata gaggtcacgc tgtcattttc
     3001 cacagagtgc atgacatcgt gctgcatgaa ggcattcatc gagtgattca gtgcatgaac
     3061 tgaacccata tctgaggagt aattcacatc gtatgtaatc gtggtattat ctggaaacac
     3121 tacgcctaac ttgtgaacca tatctccgtg accagagtga ccatcatgat cggagtgatc
     3181 accatggctg gaatggtcgc tgttgatgtg actgttattg acgacgacat tccagtcatc
     3241 ccagacggcc tgtaattcag agtgattgga tgaagtgaga tgtggccaat cgaagcccat
     3301 gtcagtagta tactcggata atctctcgac cgtgtctcgg gcagggtcaa tcgaaataga
     3361 gagtatcacg acattgttct caataccatt atcatccaac ttagaatcga tgtaagccat
     3421 attattttca acagcgaggc aaatatctgg gcagtgagta taagtgaaca ttaccactac
     3481 cactttacct tcaaaatcgg ataaggaaac atcttgacca ttttgatcgg ttagagtgaa
     3541 atctccaacg ctgagtggat tacggtattc tgtaccgttg aaatcaagat cgtcattatc
     3601 accttggcgc gtgcatccta cgagtccgag agatagaaca attagaacgg caactatctt
     3661 cttcattgaa aatatcgaaa aaaaagttag atatgaacac tactgttcaa gacatcactc
     3721 tgcaagcaga gtttttacat ccgagatgac gaaatctgga ttccaatcca tgtcacccca
     3781 gaaaacacgc tgctgcatat tacgatccag gataacagta ccagtcatat ggtcaaccca
     3841 gtaaccagga agagcgtgtc gcccagaagt acccgatcct gcagtcgcat tatccgtctc
     3901 accctcttga gtatccattc cgcatccatg atgatcaatc acttcgttag caggagtatc
     3961 tggacagata tcgaatccat ctactacacc atccgcatct gaatcatcat cataagttgt
     4021 cagacctacc ccgaaagcct tccacactgg ctccatatcc tccacgggac cggtgaggtg
     4081 gggccaggag agattctgat ccacaacata ctgggcgagt gtcgcaggat catcagccca
     4141 tggatcaaca gtaattgaaa cgactgcgac atcgtcatgc tcggcagaaa ccaaactatg
     4201 cacataggcg atgttctgac ttgtaattgg acagatgtca gggcaacggg tgtaaatgaa
     4261 ccccacaatc acgacttttc cttgtaaatc actgctattg aagaccgctc catcatggga
     4321 atcaagagcg aaaggaggaa cgtcactgcc ctctacctcg gcgccataga acggagagga
     4381 ggcttcattc catccaatac aaccactgaa catcatggtt gtagccatga gaattgcgag
     4441 ggctctctga atcattctat ccccttctgc tgtgacctga cgaatagcca cactccaatc
     4501 aaaccaacgg aaatcattgc taacgatatc tgtagtgtat tatcgtcaga atcgatatcg
     4561 caaccttgga aggtatctcc aatcggcaac acctcaacac taggttcagt gtcaacgcac
     4621 atatccacat tgtcagggac cccatcattg tcaatatcga catcatctcc gaaggagtag
     4681 ctacctggag aggtaatatt ggtattcgga tcatgagtat cattgatcaa tgtgagattg
     4741 agggtgaagg cgatattacc gtcctcctca agaacctcaa agatatacaa cgccccagta
     4801 taattcgtga cattcatctc aagtgaacat atggctccac tcggaagatt acacatgaaa
     4861 tcgtgctcat catcatgatc cccgtcgtta ttgaaatcca ttctaactga acgattcgac
     4921 tgattcacac tggtgaactc tacagtatca ttctgcacca tctgtaccgt atctggatcc
     4981 atcctcgttc cacgaacgat tacactcatc ttgtctgctc catgtgctga cactgccatc
     5041 ggcgtcacaa tgatgagaaa gataagagca agcgcgaggc gcatcggatt ttcactcctc
     5101 aatcggggtc catagcggag ggtaatcgaa tcgagggtct ttgtcctcat caaactgcac
     5161 tacatagaca ccactcacca tctcagaaat gaagacgtag cctcgagggt catattgtaa
     5221 cccccagtcg aaggggatca tacaggatgc ccaacaatca gccatatcgt agccaagctc
     5281 gttggtagga tctgcgaccc actcgggacc tgcagggaga tagtaaccaa gggtttcagt
     5341 ttctccaagt gtctcaattc cctgccatcc aagttcaggt gctggcgtac catccttcca
     5401 gacaatacta tcccagatac cgctatgatc tgtcaaccag ttacctgcat gatagtgtgt
     5461 ccaatagaca tgaccattag tcccagtgtc accattgtga gggctgaaga tataaccccc
     5521 agggatgtag tgattatcat gaacagtgcc atctggaaga atactctgac caggtagttt
     5581 ccacttgcta acaaggaaag gcattgcagg atctgttgtg tcgatagtcc atacaatccc
     5641 tgtatgatta gtattcgaac catactctgg tgcaatgata gtgtagtgtc gccagttgac
     5701 gccatagaca gcatcgcttg gacccgtccc gcattccact ggccaaagtg attgatcgac
     5761 atactgtgag acatccttgc agatcaggtg atcgtaaggc actgcgtagt ggatattgtc
     5821 gttgccaagg ttctggtcaa gccactcatt cgcactcatg ccagcatggc cacctccatc
     5881 ggggccatac cagccgtcat cagcagttgg gcaaccgagc cagcggccga cttcgtaatc
     5941 ctgtggccat gaaatcccct ctgggtcggg aactaccggt ggattggtga catccacaat
     6001 ccgaagtcca gcaccccaat aggagatgta gaggagtttc tgaccagtaa ttgggtgctc
     6061 atgatacaca ttgtcatggt tgaaaattga cccgccgcag gttgtctcag gctcaggaga
     6121 atatccaccc caacggagaa tttcacgact actattctgt tgctcatctg tttgagtagg
     6181 caaccaagat tcgaagccca ttggaacata gaaaatttgt gtccccttgt agaaggtccc
     6241 tgaatcccct tccgtcatct ctgggtaagg atccgcaccg aataggaata aactgcattc
     6301 ttcgtcagga ttagtcgctc catcccaatc gcagtagaca tgcacatctt gattatggaa
     6361 tcctgcagga gggttgttcc attccgcgac cttgattggt tcattcttat ttccaacata
     6421 gatcacgtct agacgattag cacctgagtt cgcatcgtca tcgtttggaa tcgggtccaa
     6481 ctcactgttc gtaagttcgt gattaactaa gacccagttg ttatctggtg tgaccttgat
     6541 gtcaatgatt cgtgcgattt ctgcgtagta agtagagagc aaagtgatgt tgtttggctt
     6601 tgaaatatca agaatctcaa actggttgta agaggacaca taggcgtagc atccacctgt
     6661 gccatctgga tacttcacac agtcttcaag gaaatttccc tcaattgcaa tctcagaaga
     6721 atcgccaggt gttggggcgg cgttcttgaa tgcaggatca caaggtcgac cggctgaatt
     6781 gtcaagttcg gctggtggtt tcacgttacc gtcacaattg agattatggt aatcaattag
     6841 ccggacattt ggcgtctgga gacggtgtgc aaacaaatca ctgtgagaat gattcgcgtc
     6901 ttcaatctcg gtcacgggat caatccaaac atactcctca atatcatcaa catcgtcacc
     6961 tccaaaacac ccagaaagcg gcgccatagc cattagaata cagagaatca acgctgtgtc
     7021 aactcgcgcc atatatctgg gaggaatcga cccctgttca atcgttcgtt tgaatcattc
     7081 aagttcattc ggtaccggag tctgatccat atggaggaaa gagtacactg cccaccatgt
     7141 cacaatatcc catgaatggg ccaaatttgc gacaccagtt gcattgtctg tctccatgta
     7201 ttcctcaaga gtagggagtt tgtcacaagt cttgtgataa caagggaatc catcgactac
     7261 accgttccaa cccaacgtag ctacaccgat ttgctggaag gagtcgtgat cactcctagc
     7321 tgtcggcgac tcatagattg ccactgtatc tgtgtactct tgctgccaga gaggactttc
     7381 accgccggaa gcccactctg ctgaaccacg ctccatctga tatccaaggt ccaatgcatc
     7441 tgcaccaatc cattctgcaa gatggaacat ccctggttgg tcgattgtgt caccggtgcc
     7501 atcagggccg agatatactg agagagcata gttaccagga tagttgactc cagccatatc
     7561 gagattcagg tagttgctca cagtaacacc actgggtaaa tcatcagcaa aggccgagga
     7621 accccacagc ccctcctcct cacttgacca taggcagaat accatggtac gacgtgcatc
     7681 gaaatctgcc aacgcccctg ctgttgtcaa gaccattgct gaacctgctg aattgtcata
     7741 tgcacctgtc cgggtaccat aaccggtctc ctctaatcca ggtatcaatg aagtcggagt
     7801 agcatatggt gcgatgtcaa aatggccgcc gaagacgagc cactcatcgg ggtatgtggt
     7861 tccatccttg tatccgcaaa tatttgcggc ccacaatgtc cccgactgga agcggtgaac
     7921 ttcggtccgt agaccgaatc ctgtgaggac gccttcaaag taggtgattg catcctcata
     7981 agcgggattt ccattaccaa tccagcgatc gaggtaacct acggcaccat cggcaggatc
     8041 gagcgggtct ggtgtctcgt cagtgatgaa atcaacccac tcgtagaccg aacgaccatc
     8101 tacccatcca gcagaggcat ccacgccatc atccatggtt agatccgtgc gctgtggccg
     8161 gactgtctca aactgcacca ctgtaactgg tccaccatcc gagtcatgcg cacccaacca
     8221 attccaagtg ccattgtcct cgttaggaat agttgtaatc gagccaccgt tagatgcatc
     8281 gaggctccaa tcaagccatg attcgttcgc cgcacgtaca ggccaatctg tgcgagtata
     8341 ctctccaata aggagcattg caactgaatt cctaggagga agaagccagc gaacatcctg
     8401 cgaatcaccc gcattcaaat cgaggactgt accgttctgg gcacggaggc tccctgggtc
     8461 gactacgaag tatggaatgt aaacagagag atcgattgac gcactcagtg taactacact
     8521 ccagtcacca cctaccaatt ggccagaaat ctgtaaatcc tcacttgagg gcaagccccc
     8581 ctcttgtgaa ccgaaacaac ccgcaagcgg agctgagagc atcaggaaac aaaacaagat
     8641 actcgacacg atacgtgaca tgcctttgcg taaaggaagg tgatgttcaa agattcgatt
     8701 ggaggcatct cacgctggag gaccatacgg cttatcgatg tcaagttgca ctatgtagag
     8761 cccagaagtg atgcaagata ggtatgtgta accctcatga tactcggcag cccagaggaa
     8821 ggggacccaa ccgaagtcgt agtagtcgct gtcaagaatc acgccctcac ctgcattagg
     8881 aaggtggaag gcaactgtgg aatcagaata cacttgagtc cgattcatcg ttccatcaag
     8941 acctgcaacc aagagagatt ccacatcaac gacccatagg ccagcgtgat aatggctcag
     9001 gtagatacgg gcatcccatg cgcctccatg actttgatcg ggacgattag gcgtccctgt
     9061 ctggaagatg tgcaaatctg cattgtgtgg tgagaatagg agccattcct cgccagttgg
     9121 gatgaaatga tcatctgcat atggaatctc ccaatcgtgg accaatttcg gaataaatcg
     9181 aagattacca ttatcgttag tatactctgt agtatcgaga aggtatgcca taccggttcc
     9241 aatactcgtt gagagaactt ctgttgcgag gaaggtcagg tgcatctttc ctgcggggta
     9301 accgagatga cttgcgtcaa ccatttcatc gaagggttca gcatagtgga tgtaagaaga
     9361 tcttccacca ttctcgttac ctgtagttcc gctgtcgggt tggccatcat catcgagatc
     9421 ggcaaagtcc atccactggc caacttctgg agcccgccag ttacatccag cttgagttcc
     9481 ccatgagagg cgacatgccc cgccgatgaa cagatactcc gccatatcct tgtttggatg
     9541 tgggacatcg ctcacatcga atatccgaag ccccgcctcc cagtatgcgc catagacata
     9601 ggtccgtccg taacgaggat cctcggggtc atcacccggc caagtttgga ctgtcatatc
     9661 atggatgtag atccaacccc cacgggtggt ctcccaggat acttctgcct caccgacctt
     9721 gacaatacga ggaagatcac cataagcagc gaagttcaga tgagcgatag tgataccacc
     9781 acaggcatct ccttgtccga catcgcagtc atcataatcc ggattcgcga cgaagatata
     9841 ccactcgcca tcaatcatgt gagtgtagag attgtggggg ccactaggat gatctgcatc
     9901 ataccaggaa tcaacatatg tcgggtttgc cttatctgta acatcgacta gagtaacagt
     9961 cacttgcacg gggtcacccc attcaccaac attcggatct gcattcccac tatctaccaa
    10021 ttgattttgg acaatgatat attcgcgacc attgtattcg agatacttga catcgagcac
    10081 ctgtgtattg ggatctagat agacgccggt taccgttgta ttgcgaggat cggttacatc
    10141 gacgatgtgc atttccttcc atccagcgat gtaggcgtag cgacgaccgt caggtgcatc
    10201 ggcaacctgg acctcagcgt ttcctggttc ggtcaatggg ttgaatgaca gtgcctccac
    10261 attaggagta gagaggttat gctgggatcc gttacggtga tcatgtccct cgacatcctg
    10321 aatcaaggga tcgaaaagag tgactcctga agaatcatca tcagattcaa taccagcagc
    10381 agtaatggcc ataactgcgg caccgaggct cactgtgccc agaagtgcaa cgatgacgta
    10441 tcctgcaatc atccgtcctt ccatcagagc accccagttc agcgaatgtc atgcgcaccg
    10501 gtccgaaggt gttgaagcca tcggcccagt cagacgccca tgcgaagagg actcatgacc
    10561 gcaggacttc ttctctgcat gtgcctaact gcccctacaa caaccgcaca cgaccctaca
    10621 acattcaccg taattgtggg agaaaacggt gcagttccag caaatattac tggacaggtc
    10681 ctattcacca acgatagtat ctggttccgc aatgtggata attcagagaa tatcactcat
    10741 catctgacaa ttgacatgga tggagacgga ctatacaacg gaacagaaga catctcatca
    10801 gggaatctta gttcatcctg tgcactggat gataacggaa ccaagattga ttcaacctgt
    10861 gaagtaatct ggaaggtagc actcaacgca tctaccggta taatcgccgg tactttcgac
    10921 tacatcgatg aacggtctga tggaaacatg acctctggtc gattcgtggt aaacctcgac
    10981 gatcatcctg ctaatgttgg accggatcca aactattctc tggatgtaga tgaagaacaa
    11041 gaagaggacg ttggtgagtc cactggatcc gaccagcaga tgctagtagt catcagtatg
    11101 agtgctgcaa tagccgcagg tgcggtcttg atgctcatga tgagacctat gccaattgta
    11161 cgactagaat tgactgacga gagtgagtaa actgaagcaa ttacggcact cttaggttcc
    11221 gttatcctca aaccatcgat aggggtgagc gaggccatag ggcgcttaga tcagcctgga
    11281 agatcgtctg gtttgcaacc agaaggccgg gggttcaaat cccccagcgt ccactcccct
    11341 ttttgcgtcc ataccccccg gaccagaggg ctaggttagg attttagtat gcatatacta
    11401 ctttgacggt atgcctgttg agattgctgc ggccttgttg aatgatgaga ccatggaggt
    11461 tgttggcaac aaagtcgagg aagtcgcacg ccctttccgt atcttccgcc atggtgttct
    11521 tccaatattc attatcggct gggcagtata cttcctctgg ttcatgtgag ccctcgaatg
    11581 aagcggttcg ttgatggact gatgaagcaa gttcgtatca tggaccgagc gaagagcgtc
    11641 gatgactgga tggaccatcc aaagcaagaa catctgtcag atgaacatgg agtagatgga
    11701 tcatgggaga cgatgatggc tcgtgtagct aagtttcacc acaagcacga ctttgctaac
    11761 cctgagaaca atggtcatga tatgggatac cgtattgcat taatggttga agagttgggt
    11821 gaattcagtg ctgcgattac aaagggtaaa ccacaggaag aagcggctga ggaactggct
    11881 gatgttctga ttctgacact tggtaacgcg ttagccatgg acattgacct tgaggatcaa
    11941 ttccacaaga aaatggacag gattatgcaa cgcccatcaa ggcgaggcgg catgggaatt
    12001 cgtgtgacag aatacacggg cgagcctgaa taagaagagt ggggccgtgg ccgggacttg
    12061 aacnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12121 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    12361 nnnnnnnnnn nnnnncgtgg ccgggacttg aacccgggct gacaggacca caacctatcg
    12421 tgctaaccgc tacaccacca cagccatgga agcaatttgt ggaccttcgc gagacttatg
    12481 aagcgttcca ctacccaagc gcatactact catcgaccca tcgggttgaa ggagaatcga
    12541 taccttcgac actcatggcc cgaaggtcga ctgccgcac
//
LOCUS       DUKB01000075            4520 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_81903, whole genome shotgun sequence.
ACCESSION   DUKB01000075 DUKB01000000
VERSION     DUKB01000075.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4520)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4520)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4520
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_81903"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="HA345_02580"
     CDS             complement(<1..384)
                     /locus_tag="HA345_02580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018698902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HIH84274.1"
                     /translation="MEMPTDLEIARSVELAPIEEIAWTRGIGVEELVPFGRHMAKVTW
                     PAIRSRIQRPRGSLILVTSVNPTRYGEGKTVTTIGLSIGLNRIGKKAACVIREPSMGP
                     VFGIKGGAAGGGHVQVLPMEDINLHF"
     gene            452..1447
                     /locus_tag="HA345_02585"
     CDS             452..1447
                     /locus_tag="HA345_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84275.1"
                     /translation="MADRRRFHSSVAGAPIEHSLTPILSRLVDAHLQQVTGLSFISRT
                     SRLETALIHDLLGRVLLDRMDNQSEVCTSEVIALIDEVTSDIEEGLDFPGLEAVEPNW
                     PKPAESCFGDEGVLWVSITSPLKHGLTSRSGVIPVDASLDIASTNQLRWDGHRLVTGS
                     TDGAGVILVARTWGIFRRSQSPIMILHGGGAAARSTASAWAENGGRIVSMTREGQRPL
                     DPRGPWGDALIDGVPEASLESIFQVDFDSSKEPSIRSGVPGSNVCLVASYGIGGSVEP
                     TQSASGALILDGRWMLAAQHLIAWAQFIAPDYRDSLPSLPLLLNRLSEVEARIES"
     gene            complement(1448..3001)
                     /locus_tag="HA345_02590"
     CDS             complement(1448..3001)
                     /locus_tag="HA345_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018501463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HIH84276.1"
                     /translation="MNTRIDPKEELDYLRSEARRGGGQSKVEALRASGRKTARERIDA
                     LVDSGSFMEIDAFVLSRETEHGIDRNAILGDGVIAGSATLDGRRILCFSQDFSVFGGS
                     VGEMHAQKIVKIVDMALRARLPLVAIWDGGGQRAHEGVTSLGMTGEMMDRLIACSGRI
                     PVISLVMGPVVGASALAAALADFVIIGEEHGEFFMSSPLETPEVADEGMDSKDLGGAE
                     MHASRSGIASLVAIDEEDAMDIVAEILSHFPDHCDALPPVLKTTDPDDRTCDELVDTV
                     PDDSNRPYDMKKIVEAILDDGAFIELQPAYAENIVIGFGRLGGHPIGIIANQPKVLAG
                     CLDIDASVKAARFIRTCDCFNIPLVSFVDVPGFLPGTVQEWGGIIRHGAKLLYAYAEA
                     TVPQLTVVTRKAYGGAYLAMSCKHLESDYNVAWPSGELAVMGAEGAVNIIHRRELKDA
                     NDPSTKHTELVDEYRKKFGDPYVAARNGWLDDVIEPPDTRLRLIRALKPLISKRVWQP
                     PRKHGNIPL"
     gene            complement(3089..4426)
                     /gene="gatD"
                     /locus_tag="HA345_02595"
     CDS             complement(3089..4426)
                     /gene="gatD"
                     /locus_tag="HA345_02595"
                     /inference="COORDINATES: protein motif:HMM:NF003217.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HIH84277.1"
                     /translation="MSDLEAGSYVRLRIVTRLGEQSHEGILLAPADSGLVTIKLENGY
                     NLSHPTSAIKEMTLLDSEITSDSKALVSKQPMGADLPLVTLIHTGGTIASKVDYATGA
                     VIARFEPEELIDSVPELRQIARIETTLLGNMFSDDIRPRHWNQMITETQAAFDRGSRG
                     VVITHGTDTMGASAAAMSFAWAGEGGIPPGPIVFTGSQRSSDRGSSDARENLIASVHL
                     AAHGPTPNSGSDAAVVVMHAGSSDGIMAIHAGHSVRKTHSSRRDAFESIDRQPLGSIE
                     LASEGPIVTMTQNDESRTTLPPLTYNENTKIAEMIAGAHLQPEHLQAIIATKPDAIHL
                     HGTGLGHLPTSDPNGDSPENIEIHSTIRDYVAGGGIAVATTQTIRGPVHMDVYSKGRD
                     LREIGVLGHGMNGPPETSLVKLHYLLSRDNGNRERFLQAWASNLIGERDEIKN"
BASE COUNT         1002 a         1131 c         1154 g         1233 t
ORIGIN      
        1 gaaatggaga ttgatatcct ccatcgggag gacttggaca tgacctcccc ctgcggctcc
       61 acctttgatg ccgaatacag gtcccattga cggttctcgg ataacgcatg ctgccttttt
      121 cccgattcga ttcaggccta tgctcaatcc gatagtcgta acagtcttac cttcgccgta
      181 gcgagtaggg tttacgctag taacaagaat cagtgatcca cgtggccgtt ggatcctcga
      241 tcggatggcg ggccaagtca cctttgccat atggcggccg aatggaacaa gttcctccac
      301 tcctattcca cgggtccacg caatctcttc aatcggtgct agttcgaccg aacgcgcaat
      361 ttcaagatca gttggcatct ccatacaccg aaccttttcg gttttcaatc ttgagcgtca
      421 tcaccatagg ttccgaccgg ttccaatgcg tatggccgac cgccgccgtt tccattcttc
      481 ggtcgctggg gcccccattg agcactcgtt gactccaatt ctctcaaggt tagtggatgc
      541 tcaccttcag caggtgactg gtctgagttt catctctcgc acaagtcgtc ttgagacggc
      601 gctaatccac gatttactag gccgggtgtt actagatagg atggataatc agagtgaagt
      661 ttgcacttcg gaagtaatcg cattaatcga tgaagttacc tcggatattg aggagggtct
      721 cgatttccct gggttggagg cggtggaacc gaactggcct aagccagcag aatcatgttt
      781 cggagatgaa ggcgtcctgt gggtttcgat tactagtcct ctgaagcacg gtttgacttc
      841 aagatcaggg gtgattccag tagatgcatc attggatatc gcttcaacaa atcagttgag
      901 atgggatggg catcgattag ttactggaag caccgatggc gcaggggtga tacttgttgc
      961 aaggacatgg gggatattcc gtcgttccca atcaccgatt atgattctac atggaggtgg
     1021 tgctgctgct cgttcaacag cttccgcttg ggcggagaat gggggtcgaa ttgtctctat
     1081 gactagagaa gggcaacgtc ctcttgatcc acgtggacct tggggtgatg cactcattga
     1141 cggagtgccc gaagcgtcac ttgagtcaat cttccaagta gattttgatt catcaaaaga
     1201 gccctcaatt agatctggcg tgccaggctc caacgtgtgt cttgttgcat catatggtat
     1261 cggcggctcg gttgagccaa ctcagagtgc ttctggcgct ttgattcttg atggaaggtg
     1321 gatgctcgcc gctcaacact tgattgcttg ggctcagttc attgctcctg attatcgaga
     1381 ttcactccct tcgttgcctc tgctccttaa tcgtttgagc gaggttgaag cgaggattga
     1441 gagctaatta gagtgggata ttcccatgtt ttctcggggg ctgccatact cgcttcgaga
     1501 ttagtggttt cagtgcccgt atgagtcgca gacgagtatc tggcggttcg atgacatcat
     1561 ctagccaacc atttctcgca gcgacatagg ggtcaccaaa cttcttgcga tattcgtcca
     1621 caagttctgt gtgctttgta ctggggtcat tagcatcttt gagttcacga cgatggatga
     1681 tgttcactgc gccctcggca cccattactg cgagttcacc tgatggccaa gctacattgt
     1741 aatctgattc aagatgtttg catgacattg cgagataagc tcctccgtat gccttccttg
     1801 ttacaacagt caattggggc acagtggctt ctgcataggc gtagagaagt tttgcaccat
     1861 gtcgaattat ccctccccat tcctgcactg tcccagggag gaatcccggt acatccacaa
     1921 aggagacaag tgggatgttg aagcagtcgc acgtccggat aaatcgggca gccttcacgg
     1981 aggcatcgat atcgaggcac cctgcgagga cctttggttg gtttgcgatg atgccgatag
     2041 ggtggcctcc aagacgccca aatccaatca caatattttc ggcataagct ggctgaagtt
     2101 ctatgaatgc tccatcatcc aagattgcct caacaatttt cttcatatcg tagggcctat
     2161 tgctgtcatc tggaaccgta tctaccagct catcacaggt tctgtcatcg ggatcagtag
     2221 tttttagcac gggtgggagt gcatcgcaat ggtctgggaa gtggctgaga atctctgcta
     2281 ctatgtccat tgcgtcctct tcatctatag cgactaggct agcaattcct gatcgactag
     2341 cgtgcatttc tgcacctcct aggtccttcg aatccatccc ttcatcggca acttcagggg
     2401 tctcaagtgg acttgacatg aagaactcac catgctcttc accgataatt acgaaatcag
     2461 caagggcggc tgcgagtgct gatgccccta ctactggccc cattacgagt gagattacgg
     2521 gaatgcgtcc cgagcaagca atgagtctat ccatcatttc gccagtcata cccagggatg
     2581 tcacgccttc gtgtgctctc tgccctcctc catcccagat tgcgacgaga ggtagtcggg
     2641 cacgtagagc catgtctact atcttgacaa ttttctgagc atgcatttcg ccaacagacc
     2701 ctccgaatac ggagaaatcc tgtgagaagc agagaattcg gcgcccatct agggtagcgc
     2761 taccggctat gacgccatcc ccgaggatag cattccgatc aataccgtgt tcggtttctc
     2821 ggcttaggac gaaggcatcg atttccataa acgatcctga atcgactaag gcatcaattc
     2881 gttctcttgc agttttgcgc cctgatgctc tgagagcctc gaccttggat tgccctccac
     2941 cccgtctcgc ctcacttcgg aggtaatcga gttcctcctt ggggtcgatg cgggtgttca
     3001 tcctaccgtg aattacatcg atggttcatc atcaacacga tatgtccagt atcgtaattt
     3061 tccaattgaa aaatcatttt tccaattgct aatttttgat ttcatcccgc tcgccaatta
     3121 ggtttgatgc ccaagcctga aggaatcttt cacgattgcc attgtcccgg ctaagcaggt
     3181 agtggagctt gaccaatgag gtctctggtg gcccgttcat cccgtggcca aggacgccaa
     3241 tctctcgaag atctcgtccc ttggaatata catccatgtg tacagggccc cgaattgttt
     3301 gggtcgtggc tacagcaata cctccacctg cgacatagtc gcggatagtg gaatgaatct
     3361 cgatgttctc tgggctatct ccgttaggat ctgatgtagg gaggtgccct agaccagttc
     3421 catggaggtg tattgcatcc ggctttgttg cgatgattgc ttggagatgt tctggttgca
     3481 agtgtgcgcc agcgatcatt tcagcaatct tggtgttctc gttataggtt agcggaggga
     3541 gagtagttct tgattcatca ttctgagtca ttgtgacaat cggcccttct gaggcaagtt
     3601 cgattgagcc gagaggctgt cgatcgatgg attcgaaggc atctctccta gaactatggg
     3661 tctttcgaac cgaatgtcca gcgtgaattg ccattatgcc atcagatgaa ccagcatgca
     3721 ttaccactac tgcagcatct gaaccactgt ttggtgtcgg accatgagcc gcgagatgaa
     3781 ccgatgcaat cagattctct ctggcatcac tagagcctcg atccgatgat ctctgagatc
     3841 ctgtgaatac aatcggacca ggggggattc caccttcgcc tgcccaagcg aaagacattg
     3901 ccgcagcaga cgctcccata gtatcggtgc cgtgtgtgat tacaacacct cttgaccctc
     3961 ggtcgaaggc agcctgtgtc tctgtaatca tctgattcca gtgcctcggt cgaatatcat
     4021 ctgagaacat gtttccaaga agcgtcgtct cgattcgggc aatttgtctt aattctggta
     4081 ctgaatcgat tagttcttca ggttcaaatc gagcgatgac cgctccggtt gcatagtcaa
     4141 ccttgcttgc gatagtgccg ccagtatgga tgagggtcac caatggaaga tcggcaccca
     4201 taggttgttt cgataccaat gctttggagt ccgatgtgat ttcactatcg aggagagtca
     4261 tctctttgat ggcagaagta ggatgtgaca gattgtatcc attctcaagt ttgatggtaa
     4321 ccaatccaga atctgcaggg gcgagaagaa tcccttcgtg gctctgttca cctaatcgtg
     4381 tgacgattct gaggcggaca tatgagccgg cttctaggtc actcatatcc cttgtgcggc
     4441 cgaatggggc catcaagtga acggatgggt tgtatggcta ccgctcggtt tggttggatg
     4501 gtgccgggag cgggacttga
//
LOCUS       DUKB01000076           12735 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_455, whole genome shotgun sequence.
ACCESSION   DUKB01000076 DUKB01000000
VERSION     DUKB01000076.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12735)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12735)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12735
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_455"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2326
                     /locus_tag="HA345_02600"
     CDS             <1..2326
                     /locus_tag="HA345_02600"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012364.1,HMM:NF015089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84278.1"
                     /translation="DVTQPHVVPKLRDYLSERWLVTSADSVFPMRLFLDLDLGPHMEV
                     SGSVIHARSRAPLEIASAFEGVDFLEVANSIREAGGSGLYSTDLVIRCGIEDLKDTEP
                     FRAPFVTSSFDLETSVVESTILCAAMVIDRAGVQTEYTFQGNEREILAGMTRLIRDED
                     PDILTGYNIDNFDLPRIDQRAEDLSGKDRGLLLDMFGWGRDPVVGGSMRALPSRSQSR
                     RWSIGGRAVMDAWWEARTALRPQRESLRFVSELLFPDRPELRKMDIDASRMDDEWAQR
                     PDEVLRYCVMDTVLPIEILEAIHAIRGKEALASVARMPFQRAVGGTTSQWIDSLMIRL
                     ADHEKVAIPRTRSGPRRDQIVGGHVQDVDSGLHPWIAVLDFKSMYPSIMIEKNICFTT
                     RIDAKDAPSEDVYLSPDGTAYLGRSHRSGLVPRLLQQLMEERDRQKIAMKVARNEDDE
                     VTAFFHDRLQFAVKILMNSFYGVFASSFYRFTHQDIGASITAWARSNIRGVITTLEEE
                     NQRVVYGDTDSIFISAPVDSDIPTRIPQVGEKDRESFEIARNTTVEFGQSLAKRFTKA
                     GAELEFEAALAAMFSHGAKKRYFGQVVWPEEDLLIRGYEVRRSDSFVILTNCMTSSFE
                     RILAGETTQAVEDIRTLIQRVRNRDVAPKNLVISRSCKGKINRKDGSVDFSVYANPDG
                     LPYVKAAKQRLARGLNFTPGMKVGYLVTDATSSPMSVVDWHEDETGEIQTDFDPEYYA
                     KRIATAMGRITEVFGWNEKELLQGSQQSSLDRWM"
     gene            2380..3597
                     /locus_tag="HA345_02605"
     CDS             2380..3597
                     /locus_tag="HA345_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011394084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HIH84279.1"
                     /translation="MHGGMMSRLLRASMLALLVVCLPLAGCLDSLSSNSPPTVAMNIT
                     PSGTVKAQDSVTFDAAGSSDPDGDSLSFNWNFGDGDVATGLTTSHIYTTPGTYTVTLT
                     VADSQYEVSLTKDITVADSNARLPHAEIMGQKDGDCEGEDPKTGTYILQWVCEPDREI
                     SDRGVDISTTLILDGSASWAGCDPGDSDCYAEEYLTDYEWDLDVYTDSDGDGDPMNDV
                     DATGETYDWMSMTAGEHKVSLTVTDNNGFIDQDTSLVYINYRGVWNDFELNRRGSSGN
                     VSSFNFPVVDDDEAKNTIRYVKLKITYPIEDKDFVTCEQDVCHNRFDLFVKNDTGEYL
                     DRDTTSTTDEQMVYGDCDVGTDSDPGNRCLWLQFTGGDFEKYLDGEYTVEVRNQRTHA
                     ADVIDFAIELIYK"
     gene            3709..5016
                     /gene="tuf"
                     /locus_tag="HA345_02610"
     CDS             3709..5016
                     /gene="tuf"
                     /locus_tag="HA345_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor EF-1 subunit
                     alpha"
                     /protein_id="HIH84280.1"
                     /translation="MGSQWEDKNKPHLNIVFIGHVDHGKSTTVGRLLLDSGHIEQHVI
                     DKNEKLAAESGKAGFGLAYVMDGLKEERERGITIDVAHKEFFTPNWYYTVIDAPGHRD
                     FVKNMITGTSQADAAILLCAANDGVNAQTKEHAFLARVLGVKQLIVNVNKMDISGVDY
                     SEDKYNQVCGEVDELLKMAGFNPADVPKIPCSSFNGENLYNGSDNMGWWKGTTFNDKS
                     VKTLFEAIDAVQQPSKPVDKPLRLPIQDVYKISGIGTVPVGKIETGTLNVGKNVVFNP
                     SQQTAEVKSIEMHHTQVAKAEPGDNVGFNVRGLAATDIRRGDVAGYADSAPNFVRHDE
                     TFVGQIQLMDIPKAIGAGYTPVFHAHTAQVAVRFAELLENAKTKEKNPAFLKSGDAAL
                     IRFAPTKPMAIEEMGAFPELARFAIRDMGKTVAAGVCMKIEKK"
     gene            5053..5382
                     /locus_tag="HA345_02615"
     CDS             5053..5382
                     /locus_tag="HA345_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HIH84281.1"
                     /translation="MPIITAIKLTGEDHTAVDRVAGIVKEISDRTGVTMRGPIPLPTR
                     RLSVPCRKSPDGEGSETFDHWEMRIHRRLIELVTNSSKDENAIREIIKIPIPDSVTIE
                     INLRQVN"
     gene            complement(5389..6198)
                     /locus_tag="HA345_02620"
     CDS             complement(5389..6198)
                     /locus_tag="HA345_02620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84282.1"
                     /translation="MAVTSSDTGAVAPLSEQAAQEIESRLISLQRSQADKELPLPLPN
                     SRFWGLVTQLTQRIEIEMDEARRKEGWNTKTDLIRKRMRTIRWAIGSLTQHRLNGFAR
                     LATMRTLLQREGNAPEPNWEQHGPAERAFYESVCRSIEIFQKDIDWDTLQNGISTPII
                     EVSNSGVAPLTDFIQEDKNEQTIPIADSQEDITPPPEFHIDEAWEDDNQSHSSSVPDG
                     FRRIRMLQDLPEPILGPDDNPVDLSVGDVHVCPTLLADALIGGGMAEPADL"
     gene            6298..12666
                     /locus_tag="HA345_02625"
     CDS             6298..12666
                     /locus_tag="HA345_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84283.1"
                     /translation="MDPTRGKASALSLVTLMVLMSLGPIASVVSGDDVPWTGPESMLL
                     DDATVEGFSIETNGTVTDAWITVDSDGSDTFTVPGWSSDTPGRNFSHGSHHNASSTLF
                     NGDLSLSNADNHGRIHDFENLHRRFEGWIPGGTTSVWEIADVSSLNGTVVNINNSVGQ
                     SMTARTNGGGHAPRFASDGDFVAMTQPDLSIAPGTHSWLTSPDWPIPAHVENLTFTMD
                     HWFHLWTDSDVSGTGAGAWVEVSFDGGSNWSWIEPEQGYGNTISTSAPVPNGANGSGF
                     SAWASINASGWVRSSFVLDDNPDLVNASTFRFRLVVWTPITQSTDRPGWFVDRLQMSN
                     DGYAPGAWFHGNLNGEYSPDANAALVMEADLSPVNGPMVLQYAADFDMEGDVYDNWHV
                     EMSTDGTNWTGITPMIGLPGHGVYVNGTTIIDDSNGWVSLQHAIPNGYNTTISLRFRF
                     QSDPTGGTGFGGLTIDPPEGLMLDDVRIIEISGQTEIEHAVWRFNDTSDANHSSVVLG
                     KVDQWQHISNQGINGPWDEMESFEDASLLPMDWNIRTEAGYGWAFGELNNTGPDPNSF
                     PGGGNGAGTVLNAAYRQNSYSHLESPSIPIPYGSRATLQFDHFICAESGWDGGALYIS
                     TDHGHSWSHFGSHIVDWYDSMHYNNTLSPFYGQMAWDGSRVKGGGCGTNTTFVTKTAD
                     LSNLAGQSVMLRFSFFSDTYFESSGWYVDNVGITVDVFRDKGTWTSPLIQAPDSLGWG
                     SVDVQASVPNRTAIKASILDSQGVPIIGMENRTLPVHLADLYGLTSFDSSSGIHIQIE
                     METMDEHRTPRIQQVSINGSRFLSGQAASATGWNVNSPLIVHEVEGRIENPTFMTHRV
                     DGPTIISERRIESFSIESISSGVMIEVFADGNSVHSSMISNGTVSLFIPATTLAFVLD
                     FQPGSDLEQLSIHPHLATPSFGPEIDVLSDGLVEWSWPDDSEGNSLPYGLMQGSSIES
                     NESSINGSIQISLVDDADWRYATMMLRAHTGTNVTVTVDMGLRSWTRTMSAGDFSMVS
                     MSGAELRQGQSSSVGQLVLGPVHQMPLRDVVFHVTADQDFTGSVTLLSVDQHIISNIS
                     NLGPSIENYRLSRLQDAAVAGSNLSSKLAIPVQIIQEENGGLILDGNVIQSPLMRDEI
                     LLHPTTIVPDTEFEIVTEHHHLFDVDEIDRIRLELDISGIESRPSFVLDPIATASIQT
                     IDSAGFTIDTPIVERRAYSYRVTWPLTMDWSLNDAEWVKIHAKGFDSLNRTWGPDVAT
                     IGLGGFNGIENDMEIVGFTAVDSLDRSLLDSGVYGYPLHLSPLSSIEVSGQVRFEGIV
                     GDIPPSSAAVAVIIEMEDHNWSFPAGLVGADGSWTATISIPDVEVESPDSVWNISARM
                     IRVGPAQENRNQALDNTIITHPGQFRIDRGAPLIGRLLADISGIQRPLDQDIWSLSRP
                     LIMSVEVDEVESLSRTIQIHSWIENTNDLDGDGIPQPDEYNSRPIVVPFNAHEIGKID
                     LGLLDISMGMDGALVSIYVTGVDASGRTFIGGGGPGLHADLATFALAEERPTSIERNE
                     VSMDHTEGYLLHASTHTVSFVVADDNGFISIDEIHLWLSGVGEEAGHLLYRPLLGELF
                     APANSALIPMSSEFIPSDISGNRGLLSLSFAIGENAPFEWTLFNHVPSITVIEDEQTL
                     DLDLLTLADLTWILDDRTSWQVLEVQDLTAPFGRIDSGVIHAWDGDALLCRLQIIHER
                     NGAPLSAPPVGRKVQADPHFDENLETTPGVIVNGTVDMSGIVEFVVVLPQMEIDSDGI
                     IRIRLDSIGEIAWGGRDIDVVVDRTAPRIEFLQTSLAAVQTNGLETQQVSFSILDEGG
                     VAEEEVDLHWTFRRFGVDLPGSVGYESIGPVKRQGLVYGVSESVDISTIEPKNLEDGD
                     QLVVWLTFTDLAGNPVEGIGSQYEPRAPVLRVVWFEPSIEPISVDPQPAHLNRFVDVD
                     LWIRDTGNEGGSVEVSLLAWKQDGLIERWIEQNRTTIELMPGGSVRESFEVETWAVGQ
                     MLLLAVLDGDIENGTMLPAIEVIDPDAQRGFLNSVIEGDLNSIGLLVIVFTGFGFLIG
                     IIVQRNPAAEDWDDDDDEDDIPLPETPPARPKSWPSPPDRFPDDDDEE"
BASE COUNT         3175 a         2883 c         3279 g         3398 t
ORIGIN      
        1 ggacgtgact cagccccacg ttgtccctaa gttacgagat tatctttctg agcgatggct
       61 tgtcacgagt gcggacagcg tattccccat gcgtctattc cttgatcttg atcttggacc
      121 tcatatggaa gtatcaggtt ctgtaattca tgctagaagt cgtgcacctc tggagattgc
      181 ctctgcattc gagggtgtgg atttcttaga ggtggccaat tctatccggg aggcaggggg
      241 gagtggcctt tactcgacag atctcgtgat tagatgtggg atagaggatt tgaaggatac
      301 agaaccattc agggctcctt ttgtcacatc ttcctttgat cttgagacga gcgtagttga
      361 atcaacaatt ctgtgtgctg cgatggttat tgaccgtgca ggagtacaaa ctgaatacac
      421 ctttcaagga aatgaacgcg aaatccttgc tggaatgacg cgcctcatcc gcgatgagga
      481 tccggatatt ttgacaggat acaatatcga taattttgat ttgccaagaa tcgaccaacg
      541 ggcagaggat ctttcaggca aggatcgcgg gttattgttg gatatgtttg gatggggccg
      601 agaccccgtt gttggtggat ctatgcgggc gcttccatca cgttcacagt cacgaagatg
      661 gtcaattggc gggcgggcag tgatggatgc atggtgggaa gcgagaactg cattgcggcc
      721 tcagcgtgaa tcgttacgat tcgtttccga acttctgttc ccagatcgcc ctgaattacg
      781 taagatggat atcgatgcga gtagaatgga tgatgagtgg gctcagcggc cagatgaagt
      841 actccgatat tgcgtaatgg acacagttct tccaattgag attcttgagg caattcatgc
      901 aattaggggt aaggaggcgt tagcctctgt cgcccgtatg ccgtttcaac gcgctgtcgg
      961 cgggactaca agtcagtgga ttgattctct gatgatccgc cttgcagacc acgaaaaggt
     1021 cgcaattcca cggactcgta gcggcccacg tcgtgatcaa atcgtcggtg gccatgtcca
     1081 agatgttgat tcaggattac atccttggat tgcagtgctg gattttaagt caatgtatcc
     1141 ctcgataatg attgagaaaa acatctgttt caccactcga atcgatgcta aggatgcacc
     1201 ttctgaggat gtctatcttt cacctgacgg aacagcatac cttggacgaa gccatcgaag
     1261 cggcctcgta ccacgccttc tacagcagtt gatggaagag cgtgatcgac agaagatagc
     1321 tatgaaagtg gctcgaaacg aggacgatga agtaacggca tttttccatg atcgccttca
     1381 attcgctgta aaaatcttga tgaattcatt ctacggtgtc tttgcatctt ccttctatcg
     1441 atttacgcat caggatattg gagcctcaat taccgcgtgg gcacgttcca atattcgagg
     1501 tgtaatcacc accttggagg aagaaaatca gcgtgtagtg tatggtgaca cggattcgat
     1561 tttcatctct gctccggttg attcagatat ccctacacgt atccctcagg taggtgagaa
     1621 ggaccgtgaa tcgtttgaga tagctcgcaa tacaaccgtt gaattcgggc aatctttagc
     1681 taagcgattc acgaaggcag gtgcagaact cgagtttgag gccgccctcg ctgcgatgtt
     1741 tagccatggg gcgaagaagc gttacttcgg acaggtggtt tggcccgaag aggatttgtt
     1801 aatccgtggt tacgaggttc gtcgttcaga ttccttcgtt attctaacca attgcatgac
     1861 ttcgtcgttt gagcgtattc tcgctggtga gaccacacag gcagtcgaag atattcgtac
     1921 cttgattcaa agagttcgta atcgtgatgt cgctccaaaa aacctcgtca ttagtcgttc
     1981 ttgcaaggga aaaatcaaca gaaaagacgg ctcagttgat ttttctgttt acgctaatcc
     2041 tgacggattg ccttacgtca aagcagcaaa acaacgtctt gctcgaggtc taaatttcac
     2101 tccaggtatg aaagtaggat atctcgttac tgatgcaact agcagtccaa tgtcggttgt
     2161 ggattggcat gaagatgaaa cgggagagat acaaactgat ttcgatcctg aatattatgc
     2221 taagagaata gcaactgcaa tgggaagaat cacagaggta ttcggttgga atgagaaaga
     2281 acttctccaa gggtcacagc aatcatcgct ggatcgctgg atgtaaatgg aacgtcatat
     2341 gagggggtct ctgaatcgaa tggctgatag ggaccgggaa tgcatggagg tatgatgagc
     2401 cgccttctac gcgcttccat gctcgctctt ctcgtagtat gtctccctct tgcagggtgt
     2461 cttgatagtc tttcatcgaa ctcaccacca actgtcgcaa tgaatatcac tccatccggg
     2521 actgtgaagg ctcaggactc cgtcactttc gatgcagcag ggagtagcga tccagatggc
     2581 gattctctga gttttaactg gaatttcggt gatggcgatg tcgcaacagg gctcaccacg
     2641 agccacatct acaccactcc tggcacatac acggttacgc ttaccgtcgc cgattcccaa
     2701 tacgaagtgt cgttaacgaa ggatatcaca gttgccgatt ctaatgcacg tctcccacac
     2761 gcggaaatta tgggtcagaa ggatggcgac tgtgaaggtg aagatccaaa gactggaaca
     2821 tacatcctcc aatgggtctg tgaaccagat cgagagatat cagatagagg cgtcgatatc
     2881 tcgacaaccc tcattcttga tgggagcgca tcttgggctg gttgtgatcc aggcgattct
     2941 gattgttatg cagaagagta cttgacggat tatgaatggg atcttgatgt ctacacggac
     3001 tccgatggag acggggatcc aatgaatgat gttgatgcta cgggcgagac ctatgattgg
     3061 atgtcgatga ctgcgggtga gcacaaggtc tctctcactg taactgataa caacggattc
     3121 atagatcaag acacatctct agtatacatc aattatcgag gcgtgtggaa cgattttgaa
     3181 cttaatcgtc gggggagttc agggaatgta tcctcattca actttccagt tgttgacgac
     3241 gatgaagcga agaataccat ccgatatgtg aaactcaaga ttacctatcc aatcgaggat
     3301 aaggacttcg ttacttgtga acaggatgtc tgccacaatc gatttgatct atttgttaag
     3361 aatgatacag gagagtattt ggatcgagat acaacatcta ccactgacga acaaatggta
     3421 tatggggact gcgatgtagg aactgatagc gatcctggaa atcgttgttt atggctccaa
     3481 ttcacgggtg gtgattttga gaaatatttg gatggagaat atactgtaga ggttcgtaac
     3541 cagagaactc acgctgcaga tgtgatagat ttcgccattg aactcattta caagtgaatc
     3601 gacgatattt gtaattcaat ttcgattctg aaaacgtatg tctctgatga gtagccttga
     3661 tatatgcatc cacggtcgca gcgttgctta aacacaggag tgaaccacat gggatcgcaa
     3721 tgggaagaca agaacaagcc acacttgaac atcgtattca ttggtcacgt cgaccatggg
     3781 aagtccacga ccgtcggtcg ccttctcctc gacagcggcc acatcgaaca gcacgttatt
     3841 gacaagaacg agaaactcgc tgctgagtct ggaaaggctg gcttcggtct cgcttacgtg
     3901 atggacggac taaaggagga gcgcgagcgt ggaatcacga tcgacgttgc tcacaaggag
     3961 ttcttcaccc ctaactggta ctacactgtc atcgacgcac ctggtcaccg tgacttcgtc
     4021 aagaatatga ttactggaac tagtcaggcg gacgctgcta ttctcctatg tgctgcgaat
     4081 gacggcgtca atgcgcagac caaggaacac gctttccttg ctcgcgttct tggtgtcaag
     4141 caactcattg tcaatgtcaa caagatggac atcagcggtg tcgactattc cgaggacaag
     4201 tacaatcagg tctgtggaga ggtcgatgaa ctcctcaaga tggctggctt caaccctgca
     4261 gatgttccaa agattccttg ctcatcattc aatggcgaga atctctacaa tggctctgac
     4321 aacatgggct ggtggaaggg aactaccttc aacgacaagt ctgtcaagac cctcttcgag
     4381 gcaatcgatg ctgttcagca gccttcgaag cctgttgata agcctctacg acttccaatt
     4441 caggacgtct acaagatcag tggaatcggt actgtgcccg ttggtaagat tgagacaggc
     4501 actctaaacg tcggcaagaa cgtcgtgttt aaccccagcc agcagaccgc tgaagtcaag
     4561 agcatcgaga tgcaccatac gcaggttgca aaggctgagc ctggcgacaa cgttggattc
     4621 aacgttcgtg gtcttgctgc aacggacatc cgtcgtggtg acgtagctgg atacgctgat
     4681 agcgcaccga acttcgtccg tcacgacgaa accttcgttg gacagattca acttatggac
     4741 atccccaagg caatcggcgc tggttacact cctgtgttcc acgctcacac tgctcaggtt
     4801 gcagttcgct tcgctgaact ccttgagaat gcaaagacca aggagaagaa ccctgccttc
     4861 ctcaagtccg gcgatgcagc tctaatccgc ttcgctccga ccaagcctat ggccatcgaa
     4921 gagatgggcg cgttcccaga actcgcacgc ttcgcaattc gtgatatggg caagacagtc
     4981 gctgctggcg tctgcatgaa gatcgagaag aagtgaatag ttggataatg aggagttcgg
     5041 agtcggattc ccatgccaat cattactgcg attaagttga ccggtgaaga ccacactgct
     5101 gtcgatagag ttgcaggaat tgtcaaggag attagcgata gaacaggcgt tacgatgagg
     5161 ggtccaattc ctctcccgac ccgccgactt agcgttccat gcaggaagtc tcctgatgga
     5221 gagggttccg aaaccttcga tcattgggag atgcgcatac accgtcgcct aattgaactc
     5281 gtgacaaact cctcaaagga tgaaaatgcg attcgagaga ttatcaaaat cccgattccc
     5341 gattccgtta ccatcgaaat caatctgcgt caggtcaact gattaggatt acagatctgc
     5401 tggttctgcc attccgccac cgattagtgc atcagctaac agggtcggac atacatggac
     5461 atcaccaact gagagatcaa ccgggttatc atcgggacca agtattggtt caggaagatc
     5521 ttgtagcatt cgaatccggc gaaatccatc tggaaccgat gaagaatgcg attgattgtc
     5581 gtcctcccag gcttcatcga tatggaattc aggaggaggg gtgatatctt cctgagaatc
     5641 tgcgattgga attgtttgct cattcttatc ttcttggatg aaatcagtca atggggcaac
     5701 accagaattg gaaacttcga taatcggtgt agatataccg ttttgcaagg tatcccaatc
     5761 gatgtctttc tggaaaattt cgatggagcg acagacactt tcgtaaaatg cacgttctgc
     5821 tggtccatgc tgttcccagt ttggttcagg ggcgtttcct tctcgttgga gaagtgtccg
     5881 cattgtggcg agtcgagcaa atccgttcag acggtgttga gttagggagc cgatagccca
     5941 acgaatggta cgcatccgtt tgcggattag atctgtcttc gtattccatc cttccttcct
     6001 ccgcgcttca tccatttcaa tctcaattcg ttgagtgagt tgagtcacca atccccagaa
     6061 tctggagtta ggaagcggga gagggagctc tttgtctgct tgtgagcgtt gaaggctgat
     6121 gagcctcgat tcaatctctt gtgcggcctg ttcgctcaac ggggcaaccg ccccagtgtc
     6181 agaactagtg accgccatcc atttgcagtc aaaccggccg actcatgaac cattcgttct
     6241 tacttcaaga gaacgcaagg ccggacgatt gaaacgaccg tggatggcta gcctaccatg
     6301 gaccccacac gcgggaaggc atctgccctt tctctcgtga ccctcatggt gctgatgagc
     6361 cttggtccaa ttgcttcagt tgtctcaggt gatgatgtgc cttggacggg tcctgaaagc
     6421 atgttactgg atgatgcaac cgttgaaggt tttagcattg agaccaatgg aacagtcacc
     6481 gatgcttgga ttacggttga ttcggatggt agcgatactt tcactgtccc cggttggtcg
     6541 agtgacactc ctggacgaaa tttctctcat ggttcacatc acaatgcttc ctccacattg
     6601 ttcaatgggg atcttagttt gtcaaatgcc gacaatcatg gtagaattca cgacttcgag
     6661 aatcttcatc gtcggtttga gggatggatt ccggggggga caaccagtgt ttgggagatt
     6721 gccgatgtat ctagcctaaa tgggactgta gtcaacatca acaactctgt aggccagtcg
     6781 atgacggctc ggaccaatgg aggtggtcat gcacctagat tcgcctcaga tggagatttt
     6841 gttgccatga ctcaacctga tcttagcatc gctccaggta cacattcatg gttaacaagt
     6901 ccagactggc caattccagc acatgtagag aatctgacct tcacaatgga tcattggttt
     6961 catctctgga cagattcgga tgtgtctggt accggagctg gagcctgggt agaggtttct
     7021 tttgatggag gatctaactg gtcctggatt gaacctgagc agggttatgg gaatacaata
     7081 tccacctctg ctcctgttcc aaatggagcg aatggttcag ggttttcagc atgggcatcc
     7141 attaatgcaa gcggatgggt tcgttcatcc tttgttttag atgataatcc agatcttgtt
     7201 aacgcgagca cgttccgttt ccgtctcgta gtttggacac cgattacaca atccacagat
     7261 cgaccaggat ggttcgtaga tcgtcttcag atgagcaatg atggttatgc tcccggtgcg
     7321 tggttccatg gtaacttgaa tggggaatac tcaccggatg caaatgctgc tttggtcatg
     7381 gaagcggacc tttcccctgt caatggaccc atggtcctac agtacgctgc ggatttcgat
     7441 atggaggggg atgtctacga taactggcat gtcgagatga gcacggatgg aaccaattgg
     7501 acaggcatca ccccgatgat tggtcttcct ggacacggcg tctatgtgaa tggaactact
     7561 ataattgacg attcaaatgg ctgggtgtca cttcagcatg cgattcctaa tggatacaac
     7621 acgacgattt cgctacgttt tcgattccaa tctgacccga caggaggcac tggttttggc
     7681 ggtttgacaa ttgatcctcc cgaaggcctc atgctggacg atgttcgaat tatcgagata
     7741 tctggtcaaa cagaaatcga acatgcggtg tggaggttta acgacacttc ggacgccaat
     7801 cattcctctg ttgttctagg taaggtagac cagtggcagc atatctcaaa ccaagggata
     7861 aatggccctt gggatgaaat ggagtccttc gaagatgcaa gtctgttacc gatggattgg
     7921 aacattagaa cagaggctgg atatggttgg gcattcggtg aactgaacaa caccggacca
     7981 gatcctaact cattcccagg tggggggaat ggtgccggaa cggtgttgaa tgcggcttac
     8041 cgacagaatt catattctca tttggaatca ccatcgattc ctatccctta cgggagccga
     8101 gcaactctac aattcgacca tttcatctgt gcagagagtg gttgggatgg aggagccctc
     8161 tacatttcga ccgatcatgg acactcttgg tctcactttg gctcccatat tgtggattgg
     8221 tatgattcga tgcactacaa caacactctc agtccgttct atggacagat ggcttgggac
     8281 ggctctcgag tgaaaggtgg cggttgtggg actaacacca ccttcgttac caagacagcg
     8341 gatttgagca atctcgctgg ccagagtgta atgctcaggt tctcattttt ctcagacacc
     8401 tacttcgaat ccagtggctg gtatgtggac aacgtcggta ttactgtaga tgtatttcgc
     8461 gataagggca cgtggacgtc accgttgatt caagccccgg attctttggg atgggggtcc
     8521 gttgatgttc aggcaagtgt gccgaataga accgcaatca aggcatctat actcgattca
     8581 cagggggtgc cgattattgg gatggaaaat cgaactcttc cagtgcatct tgcagatctt
     8641 tacggattaa cctcctttga ttcgagttca ggtatccata tccaaatcga gatggagaca
     8701 atggacgaac acaggacccc ccgtatccaa caggtatcca ttaacggcag ccgattcctt
     8761 tccggtcaag ctgcatctgc aacaggttgg aacgtgaact caccattgat tgtacatgag
     8821 gtagaaggaa gaattgagaa tccaactttc atgacacatc gcgtcgatgg accaaccata
     8881 atttctgagc gtcgtatcga atcattctcc atagaatcga tttcctcagg agtcatgata
     8941 gaggtctttg cggatggaaa ttccgtacat tcttcgatga ttagcaatgg cacagtttct
     9001 ctcttcatac ctgccaccac tcttgcattt gtattggatt tccaaccagg gtcggatttg
     9061 gaacagttga gtattcatcc tcatcttgca acaccttcct ttggtccaga gattgatgtt
     9121 ctctccgatg gcctagttga atggtcttgg cctgatgaca gtgaaggtaa ctctcttcca
     9181 tatggtttga tgcaggggtc gagtatagaa tcaaacgaat catcgattaa tggttcaatt
     9241 cagattagct tagtcgatga tgctgattgg cgttatgcga ctatgatgtt gcgcgctcat
     9301 acaggtacca atgtaacggt aacagtcgat atgggtctgc gttcatggac gcggactatg
     9361 tcggcaggcg acttctcaat ggttagcatg agtggtgctg aactccggca aggtcaatcc
     9421 tcttcagttg gccagttagt acttggcccc gtacatcaga tgcctctgcg agatgtcgtt
     9481 ttccatgtta ctgcagatca ggattttact ggatctgtga ctttgcttag tgtggatcag
     9541 cacatcatat ctaacatttc caatcttggt ccttcaatag agaactatcg ccttagtcgc
     9601 ctccaagatg cagcggttgc agggtcgaat ctttcctcca aactggcgat tccagttcaa
     9661 atcatacaag aggaaaatgg aggccttatc ctcgatggta atgtaattca gagccctctg
     9721 atgagagatg agattctact tcaccccact acaattgttc cagatactga attcgagatt
     9781 gttactgaac atcaccacct tttcgatgtg gatgagattg atcgaatccg tcttgaattg
     9841 gatattagcg ggattgaatc tcgaccatcc ttcgttctcg atccgattgc cactgcatcg
     9901 atccaaacaa tcgattctgc aggattcact attgataccc caatagtaga acgccgagct
     9961 tacagctacc gagttacttg gcctttaacg atggattgga gtctcaatga tgcagagtgg
    10021 gtcaaaatcc atgcaaaagg cttcgattca ttgaacagaa cttggggtcc ggatgtagca
    10081 acaatcggtc tcggtggatt caatggaatc gaaaacgaca tggaaatagt cgggttcact
    10141 gctgtagatt cacttgatcg gagcttacta gattctggtg tatacggtta cccactccat
    10201 ctcagccccc tctcgtcaat agaggtgagt gggcaggtga ggttcgaggg aatagttggg
    10261 gatatacccc cctcttccgc tgcggtagcc gtcataatcg agatggagga ccacaactgg
    10321 tctttccccg caggtctagt gggggccgat ggttcatgga cagcgacaat ctctattcca
    10381 gatgttgagg ttgaatcacc tgactcggtt tggaatatca gcgctcgtat gattcgagta
    10441 ggtccagctc aagagaatcg aaaccaagcc ttggataaca caataattac tcatccaggc
    10501 cagttcagaa ttgatcgtgg agcccctctg atcggtcggt tgcttgctga tatcagcggt
    10561 attcagcgac cccttgacca agatatctgg tcattatcgc gccccttgat aatgagtgtc
    10621 gaggttgacg aggtggaatc cctttctcgc acaatccaaa tccattcgtg gattgagaat
    10681 actaacgatc tagatggtga tgggatacct cagccggatg aatacaattc acgccccatc
    10741 gtggttccat tcaatgctca tgaaattgga aaaatcgatc ttggtttgtt ggacatttcc
    10801 atgggtatgg atggagcact ggtatccatc tatgtgactg gtgtagatgc atctggacgc
    10861 acattcatcg gtggtggtgg acctgggctt catgcagatc ttgcgacttt tgcacttgct
    10921 gaagaacgcc cgaccagtat cgagaggaac gaggtctcaa tggatcatac tgagggatat
    10981 ctcctacacg catctacaca cacggtgagt tttgtagtcg ctgatgataa cgggttcata
    11041 tcaatcgacg agattcattt gtggttgtct ggagtaggtg aagaagccgg acatctactg
    11101 tatcgccctc ttcttggtga attgtttgca ccggccaaca gtgctctcat cccgatgagt
    11161 agtgagttca ttccgagtga tatttcgggg aatcgtggat tgttgagcct cagttttgca
    11221 attggcgaga acgccccgtt tgaatggact ctattcaatc atgtgcctag cattacggta
    11281 attgaggatg aacaaactct agatctggat ctcctgaccc ttgctgatct cacttggatc
    11341 ttggatgata gaacgtcctg gcaggtgctt gaagttcagg atttgacagc tccattcggg
    11401 cgtattgatt ccggtgtaat ccatgcatgg gatggagatg ccctactatg ccgtcttcag
    11461 attatccatg agcgcaatgg tgctccactt tcggctccac ctgtgggccg aaaagtacag
    11521 gctgatccac atttcgatga gaatcttgag acaacccctg gcgttattgt aaatggtacc
    11581 gtcgacatga gcggaatagt cgaatttgtc gtcgtcctcc ctcagatgga aatcgatagt
    11641 gacggcataa tccgtattcg attagattcc atcggagaga ttgcatgggg tggccgtgat
    11701 atcgatgtag tcgttgatcg tactgcacct cgaatcgagt tcctccagac cagtctagct
    11761 gcagttcaga ctaacggact tgaaacacaa caggtttcct tttccattct cgatgaagga
    11821 ggtgtagctg aagaggaggt tgatctccat tggactttca ggcggtttgg agttgattta
    11881 cctgggtctg taggctacga atccatcggg ccagtcaagc ggcaaggtct cgtctacgga
    11941 gtatccgaat ccgttgatat ttcaaccatt gaaccgaaga atcttgagga tggagatcag
    12001 ttagtagtat ggttgacgtt taccgacctt gcagggaatc ctgtagaagg tattggtagt
    12061 cagtacgagc cacgggcacc agtgctcaga gtggtctggt ttgagcctag tattgaacca
    12121 atttctgtag accctcagcc agcacatctc aaccgctttg tggatgttga tctttggatt
    12181 cgtgatactg ggaatgaagg gggtagtgtc gaagtgtctc ttctcgcttg gaagcaggat
    12241 ggattgattg aacggtggat tgagcagaac agaacaacga ttgaactgat gccgggaggt
    12301 tctgttcgtg agtctttcga ggtggagaca tgggctgtcg gtcagatgtt actacttgct
    12361 gtccttgatg gtgatataga gaatggaacc atgcttccag cgatcgaggt aatcgatcct
    12421 gatgcccaac gtggcttcct caattccgtt atagagggtg atttgaattc gattggctta
    12481 cttgtgatag tattcactgg ttttggcttc cttatcggca tcattgtgca acggaatcct
    12541 gccgcagagg attgggatga tgatgatgat gaggacgaca taccattgcc agaaacccca
    12601 cctgctcgtc cgaagtcatg gccttcacct ccagatagat tcccggatga tgatgacgag
    12661 gaataacttc gcaaccctca agcgtgatgc cgttggaccg ctggatgcgc aggggtaccc
    12721 gagtggtcaa agggg
//
LOCUS       DUKB01000077            3135 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_153279, whole genome shotgun sequence.
ACCESSION   DUKB01000077 DUKB01000000
VERSION     DUKB01000077.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3135)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3135)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_153279"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..381)
                     /locus_tag="HA345_02630"
     CDS             complement(<1..381)
                     /locus_tag="HA345_02630"
                     /inference="COORDINATES: protein motif:HMM:NF012478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84284.1"
                     /translation="MESGSIVHIDYDLYNADTEDLIETTRQNVAEEHEKAEPGRTYSP
                     LVTVVGDGRLIAGFEAHLLEAKADEDYKFDIPPAEAYGERDPSAIEVMSLQQLSRAVS
                     DPESLQIGGMVEIGGRNGILKSFRS"
     gene            complement(483..2858)
                     /gene="ccsA"
                     /locus_tag="HA345_02635"
     CDS             complement(483..2858)
                     /gene="ccsA"
                     /locus_tag="HA345_02635"
                     /inference="COORDINATES: protein motif:HMM:NF013725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HIH84285.1"
                     /translation="MGSEMWLDAVLIGGGLAATCLAIHHGVTNRSPHPKEFWILGIQS
                     LPFIVLIFAFIVDYDALRLVRSHGSPDLPLHYRVSAAWAGRAGPLLLWVAWLAAVRLW
                     WRRRPDDDSMRNRLGSGVVLHFLILMILFIALLLQPFEFDPDATRHELNVYLQTDLMV
                     IHPPIVFSFYAFCLLVGSIALEGMINGSESHSIHEEQLPAARAAFFTGTVGIGLGGLW
                     AYTVLDWGGYWAWDPVETASFLPWLTALLVIHVRMTPRPDGRESAMEWAPALGLLTGA
                     LAMHSTLVTRANGVWASVHAFVVSDSEVALPDDAYLRVLSLWSEGVEGAEVFLEFTIM
                     LVLLGAATLLLARNQAERVHRSGADTLLTRRPFLAYGVLLGISVIHIRSASLSVAVIA
                     IPVLILMIHDRVHTVLWSSVGVIIMLFSRWSWHLETVEAGIGMLLFLLPWLLAPEEDT
                     LPQRPNVRRLSLFVPLAGGGSFLLLTWLLLLAEIDGPSPEAHEAFGAILIGLLAAGIL
                     TYSLRRSSERQRWFVLGFGLILSVVSAWVGESYLPLPGNADQLIATSITRGDIARFLL
                     VWLILAALPAIAELVTEVNARSSASVHSQPTLLRLASHVAHAGILLLLIGHVLTTTLV
                     DRVDPSHQVTLIRDEPVQHGDLIFTMRGIETSVRGEPIFDDRFNIGDAFFGIVIDVGD
                     LDGKSLGEVRPGVLRFDAEESGSITPRSEVDRLVMWDGDVIMILDLNQMSLIMNDGLL
                     GGLDEVDRVRLTVYDLPGSHLVWTGWIMIVIGSMMTLNSRSITTNQSVESE"
     gene            complement(2903..>3135)
                     /locus_tag="HA345_02640"
     CDS             complement(2903..>3135)
                     /locus_tag="HA345_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84286.1"
                     /translation="PPYHKILRGKQALYSLSDRDMSIMGRCFQEEMGNMGVLGKAMVG
                     FRLLFRRPWLYVRGIIPAMLAFGYSRAKYYGW"
BASE COUNT          930 a          798 c          761 g          646 t
ORIGIN      
        1 agaacggaac gacttgagaa tcccattgcg accgccaatc tcaaccatgc cgccgatttg
       61 taggctttca gggtcactaa ctgctcgaga caactgttga aggctcatga cttcgattgc
      121 actcggatca cgctcgccat aagcttcagc cggagggata tcgaatttgt agtcctcgtc
      181 agccttggcc tcaagcagat gggcctcaaa accagcgata aggcggccat ctccaactac
      241 tgtaacaagt ggagagtagg tgcgccctgg ctcagccttt tcatgctctt ctgcaacgtt
      301 ttgacgggtt gtctcgatga gatcctccgt atcggcgttg tagaggtcgt aatcgatgtg
      361 gacgatggaa ccgctctcca tgtttgttgc ctcccttgag ggatgaccgc gcgacctgat
      421 tcccccttat gagcgtggcc cttgagaaaa tgatggaatc tatggggttt tgagaggcat
      481 tatcactcag attcaacaga ttggtttgta gttatacttc tactattcag cgtcatcatc
      541 gaacctataa caatcataat ccagcctgtc cagaccagat gactaccagg taaatcatag
      601 acagttaatc gaaccctgtc cacctcatcc aagcctccga ggagtccatc attcatgatt
      661 agagacatct gattaagatc aagaatcatg atgacgtctc catcccacat taccagacgg
      721 tctacctcag aacgaggagt gatggagcca ctttcctctg cgtcgaagcg aaggacgcca
      781 ggtcggactt ctccgaggga ttttccgtct aaatccccta catcgatgac aattccgaag
      841 aaggcatcac cgatgttaaa tcgatcatca aaaatcggct caccccggac agaagtctcg
      901 atgcccctca tagtgaatat tagatcccca tgttggactg gctcatcccg aatcaatgtc
      961 acttgatgac tggggtcgac acgatcaacc agcgtggtag tgagtacatg tcctatcagt
     1021 agtagtaaga tgcctgcatg ggcgacatgt gatgcaagac gaagcaaggt aggttgacta
     1081 tgaacggatg ctgaggaacg tgcatttacc tcagtgacaa gttcagcgat tgcaggaagt
     1141 gcagcaagaa taagccacac taataggaat cttgcgatat ctcctcgagt gatcgatgtt
     1201 gcaatcaatt gatccgcatt acctggcaga ggcaagtagg attctccaac ccatgcggaa
     1261 acaacagaca agatgaggcc gaatccaagc acaaaccaac gttgtctctc acttgagcgc
     1321 cgcagagaat atgtgagaat accagcggcc agtagaccaa tcaagatagc cccgaaggcc
     1381 tcgtgagctt caggggatgg tccatcgatt tctgcaagga ggagtaacca tgtcagaagg
     1441 aggaaagagc cccctcctgc aagaggaaca aagagggaaa ggcgtcgaac gttcggtcgt
     1501 tgaggtagcg tatcctcttc aggagcaagc aaccaaggca gaaggaaaag tagcattcca
     1561 ataccagctt caaccgtctc tagatgccac gaccatcttg agaagagcat gatgattacg
     1621 cccacactag accaaagaac tgtatgtacc cgatcatgaa tcattaggat tagaacggga
     1681 attgcgatta cggcgactga caaagaggct gagcgaatat ggatgactga aattccaagc
     1741 agaacaccat atgcaagaaa cggacgacga gttagcagag tatctgcacc cgagcggtgt
     1801 acacgctccg cctgattacg tgcgaggagt aacgtcgctg cgcccaaaag caccaacata
     1861 atcgtgaatt caagaaatac ctctgcaccc tcaacccctt cagaccacag gcttaggacc
     1921 cgtagatagg cgtcgtcagg caaagcaacc tctgaatcag atacaacaaa tgcatggact
     1981 gaagcccaga caccgtttgc ccgcgtgacc aatgtggaat gcattgcaag agcacctgtc
     2041 aatagaccaa gagcaggtgc ccattccatg gcggattctc ggccatctgg acgaggagtc
     2101 atacgaacat gaatgacaag gagagcagta agccatggga gaaacgaggc tgtctcgact
     2161 ggatcccaag cccaataccc gccccaatcc aatactgtgt aggcccacag tcctccaaga
     2221 ccaatcccaa ctgtacctgt gaaaaatgcg gctcgggctg ctggaagttg ctcctcatga
     2281 atcgaatgag attcagaacc gttaatcata ccctcaagag caattgaacc gacaagtaag
     2341 cagaacgcat agaaggagaa aacaatcggt ggatgaatga ccattaaatc ggtctgaaga
     2401 tacacgttaa gttcgtgacg tgtcgcatca ggatcgaatt caaaaggctg caaaagtaaa
     2461 gcaataaaca aaatcatcag aatcaagaaa tgcagtacaa ctccggaacc caatctgttc
     2521 ctcatcgaat catcatctgg ccttcgacgc caccaaagtc gcactgcggc gagccaagcg
     2581 acccagagaa gaagagggcc tgccctacca gcccaagcag ccgagacacg gtaatggaga
     2641 ggtaaatctg gtgaaccgtg ggaacgaacc aatctgaggg cgtcataatc tacaatgaaa
     2701 gcgaaaatga ggacgatgaa tggcaatgat tggataccaa gaatccagaa ctccttggga
     2761 tgaggtgaac gattcgtcac accatgatgg atggcgagac aagtcgcagc gaggcctccc
     2821 ccaatgagaa ctgcatccaa ccacatctca gaacccattc gaccgtgtat tgaggcgact
     2881 caatagggca tcggctgaag aatcaccagc cgtagtactt cgcccgactg tatccaaaag
     2941 cgagcattgc aggaattatc cctcgtacgt aaagccaagg acgtcggaaa aggaggcgaa
     3001 atccaaccat tgctttgcct aacacaccca tgttacccat ttcctcttga aagcaacgcc
     3061 ccatgataga catatcacga tcactgaggg aatagagggc ttgctttcca cggagaatct
     3121 tgtgatacgg cgggg
//
LOCUS       DUKB01000078            6929 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_186801, whole genome shotgun sequence.
ACCESSION   DUKB01000078 DUKB01000000
VERSION     DUKB01000078.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6929)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6929)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6929
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_186801"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..866
                     /locus_tag="HA345_02645"
     CDS             <1..866
                     /locus_tag="HA345_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84287.1"
                     /translation="TSIEVFRDAAFPEISELETSSRMTIADIRDGMRDVSVVVQIESM
                     ETRTFTREGEEKSLLSVRVLDPSGRCKMTVWEPIDLVPGEAVLVKDARIRAWQGTPDI
                     TVDQASQIESLGEPSWGKIDPAEHVVELHLWELAQGGSRDGISTAGDILVIRDDCGII
                     QRCPECRRVLRDGVCADHDVVEGVDDLRFRFVIDDGVATANLLLGRGPTEALTGETMD
                     EIRQRIEDEGRAEFLKGLRERWFGERMRIKGRGIVDDRGVMIMADSAIIEGSDPSVLA
                     AKVRADWGVVL"
     gene            884..1801
                     /locus_tag="HA345_02650"
     CDS             884..1801
                     /locus_tag="HA345_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84288.1"
                     /translation="MRQPALRMFSVEFSQSSLPIIGQGEFDPSFIVTKLGAKTSRMLV
                     AGVIDSMERRDTESGPGYRGRLRDPSGLHMFDVAPFNPELHADAEEVLAKFERGDRFL
                     MLMLGRSRHYETEDGGVFTSIRVEAFREIDSKRYHTWLARTADSTMRRIDAHRRAKEL
                     DADAAAYRNADIPADLIDGMIRARSHYGDVDISAYELAVMHAISMGEGTPPPKQAIPE
                     ADATEPAPAQPPVVDLSETSEEDAKAMAKACVLEVLGSASEPVDYDTLIRSCLDIGVG
                     RLTAEEVIDDLRDVDAMIVEETFGYFNLL"
     gene            1859..2203
                     /locus_tag="HA345_02655"
     CDS             1859..2203
                     /locus_tag="HA345_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84289.1"
                     /translation="MAGISCFIRANEGEWMQLENCTVHVNIKRRIERTLVRGGEGDDL
                     RDEGSESAVYTLSLKVDTAGYQVLEGLFRAGQPAFIDPFLDREMLVAVQALDYDSDTQ
                     VIRLVLVEDAEA"
     gene            2206..2772
                     /locus_tag="HA345_02660"
     CDS             2206..2772
                     /locus_tag="HA345_02660"
                     /inference="COORDINATES: protein motif:HMM:NF012694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84290.1"
                     /translation="MESEERDLLAALRAFDVLLGAGIGLESVLINLARGGYGAISTDM
                     ERIMKGVNDGRRLEDELTKAATRTKSTGYKRLLNTLKTNVTSNTDLIVDLRRQADREE
                     EERTERIEKYIEALEGMPTGLLTVGMLGPIMLPLVAVMPYLFTVPVAGITAPSPATAN
                     LISMAGYTISVVIMALIGLKAHTKDPGV"
     gene            2784..3521
                     /locus_tag="HA345_02665"
     CDS             2784..3521
                     /locus_tag="HA345_02665"
                     /inference="COORDINATES: protein motif:HMM:NF012694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84291.1"
                     /translation="MIWQLMERLNDNPAAIILLPLAIICLGGAIPLMREHSRRRSIER
                     ALPEMLELISAELGAGLGLEQAFADVAKSRNDEAGKLLDVALERAQATSFSAALARFA
                     IETRSTMVQRVVNLLDAALEQNAPLQDVTYRMSIEYEKLNTLLRMKEEKVFGQAFTMI
                     ILMALMLPVITGFIVGVFAGPATGYPLGSTLNALYIFSAAATGVTVVISGRMLDRLGQ
                     YVWTAPLGMFISTVLFQGVYLVAGNLF"
     gene            3531..4769
                     /locus_tag="HA345_02670"
     CDS             3531..4769
                     /locus_tag="HA345_02670"
                     /inference="COORDINATES: protein motif:HMM:NF012652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HIH84292.1"
                     /translation="MADIIDQYGDVIIYSEEGHPTPFYEFNGQIAANPYGVLQVLLDD
                     DDLEEVMYNGGKQCVKIAHRKHGMCRTNIWVEDEEGIQISKNIASFTDVPLGDGPGMV
                     PIFDGRLPDGSRVNGTIPPVSPDGPTLTIRKFREDPITIVDLIRWGTVSPRLAAMFWT
                     WVDGMGAKPANFVIAGGTGSGKTTTLNCLGMFVPWSDRVLSVEDTAELSIHHDHWLRM
                     ETRAHRPDGTSEIDMNDCLKSSLRMRPDRVIVGEVRGPEAATLLMAMNTGHDGSFGSL
                     HANTANETVKRLVNPPMAVPAIMLSALDLIIMQARLNVGGKNIRRITEVAEIAGMEGD
                     TPRLNPIWKYDAGQGKIVETGVPSKVREIICAAKGCTPADFEAIVRQKEQILTDLVNR
                     EIRDIESVTRVIQTYHAAVN"
     gene            complement(4770..6452)
                     /locus_tag="HA345_02675"
     CDS             complement(4770..6452)
                     /locus_tag="HA345_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84293.1"
                     /translation="MVDRADLLVTIQTGRLEELKEIAANHSISRTGSVERLRVRLIEQ
                     LILDEEELAWDGIQDMSNRHLTDVLKVFGIKSSGSHKDKRQRLWLHVHQDPKTLSIDT
                     LPDMNRDDLHELCARLEMPRSGNKTQLVARVGGVLSSQEGAWGRIKRSVKRGAVAPAK
                     VPAPQKEAPIPVENTPIQENTMDVPAIEEDTPEEETVVEAPLDEVVPDEATEDHVADT
                     RPLSSTIEAGAEIALNDLQSREAEVRSLIRDFLLLGDQTPEDITAFIEDLKPRGFAVQ
                     HSIVRDAILDLVAEMAERRAAEQEAQSLLPGSWRERQAIRRFEELRNSLLDVLEETLL
                     SARGDIPAARMGFENHARESGLDLDLPAISGRIHALFDLQISLNEMEMNVDPVAARRD
                     RAIRLLLRRVDEIDATARATLERMEMQIESLERIVETVIRRNDGQFTSLEHSLMIRFL
                     ERRGWDANHPEVRPRLIAAAGALAVEMGYISEDQMPTLPGQIALDPERVTNVVETLNE
                     VLESFGRKPARTVEELDNNEEEDVDEAEVARRTLDAADAVLDRLRKMTEEGA"
     gene            complement(6554..>6929)
                     /locus_tag="HA345_02680"
     CDS             complement(6554..>6929)
                     /locus_tag="HA345_02680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84294.1"
                     /translation="DWTDEHAFNAWIVQRTIMHRTPAELHEFVGIHYRQQRIGSILTE
                     AERVNDLFILDNLIDPEGEVDDQPRYEVIVELLSRDGLRTTSIERIGPISRLGVDIQF
                     MMNDWNSILERFMTDEDGFIQP"
BASE COUNT         1546 a         1671 c         1880 g         1832 t
ORIGIN      
        1 gaactagcat cgaggtattc cgcgatgctg ctttccctga gatatcggaa ctcgagacct
       61 cttctcgaat gaccattgca gatattcgtg atggaatgcg agatgtgtct gtcgttgttc
      121 agattgaatc catggagacc cgcaccttca cacgtgaggg tgaagagaag agtcttctga
      181 gtgtccgagt cctagatcct agcggtcgtt gtaagatgac tgtttgggag ccgattgatt
      241 tagttccggg tgaagccgta ctggtcaagg atgcacgaat tcgcgcatgg caaggtactc
      301 ctgacatcac tgttgatcag gcgtctcaga ttgaatctct cggagaaccc tcgtggggga
      361 agattgaccc ggctgaacat gtagtcgaac ttcatctgtg ggaactcgct caggggggtt
      421 cacgtgatgg catctctacc gcgggagata ttctcgtcat cagagatgat tgtgggatta
      481 ttcagcgatg tcctgaatgt cggcgtgttc ttcgtgacgg tgtttgcgct gaccatgatg
      541 tagtcgaagg tgtggatgat cttcgcttcc gtttcgtaat tgatgacgga gttgcaactg
      601 ctaatcttct acttggtcgt ggacctaccg aggctctaac tggtgagacc atggacgaga
      661 ttcgtcaacg aatagaggac gaagggcgtg cagaattcct gaagggtctt cgagagcgat
      721 ggtttggcga acgcatgcga atcaagggcc gaggtatcgt tgatgacaga ggtgtgatga
      781 taatggctga ctcagccata atcgaaggtt ctgatccttc agttctcgcc gccaaggtcc
      841 gtgctgattg gggggtggta ttgtgagtat gggaggttca aggatgcgtc aaccggctct
      901 acgtatgttc tctgtagagt tctcacaatc gtctcttccg attatcggcc aaggagagtt
      961 tgacccctca ttcattgtga ccaaacttgg ggcgaagacc tcgaggatgc tcgttgcagg
     1021 cgtaatcgat agtatggagc gaagggatac ggaaagtggc ccaggatacc gcggtcgtct
     1081 acgtgatcca tccggtttgc atatgttcga tgtagcacca ttcaatcccg aacttcatgc
     1141 tgatgccgag gaggttcttg cgaagtttga acgcggtgac agattcttga tgctgatgct
     1201 tggccgctcg cgccactatg agaccgagga tggcggtgta ttcaccagca ttagggttga
     1261 ggcattccgc gagatcgatt ccaagcgcta ccatacctgg ctcgctcgaa ccgcggattc
     1321 tacaatgcgg cggattgatg ctcatcgcag agctaaggaa ttggatgcgg acgctgcagc
     1381 gtaccgtaat gccgacatcc cggcagatct tatcgatggc atgattcggg cacgttcaca
     1441 ttatggggat gtcgatattt ccgcttacga actcgcagtc atgcatgcta ttagtatggg
     1501 tgaaggaaca cctccaccca agcaggcaat ccctgaggcg gatgccacag agcccgcgcc
     1561 agcgcaacct ccagtagttg acttgagtga gacaagcgag gaagatgcga aggcgatggc
     1621 caaggcatgt gtgcttgaag ttcttggttc agcaagtgag ccagttgact atgatacctt
     1681 gatccgttct tgtcttgaca taggcgttgg acgtctgaca gccgaggagg tcatcgatga
     1741 cttgagagat gtggatgcga tgattgtaga ggaaaccttt ggttacttca acctcctttg
     1801 ataggaagtc acggcgatac cttcatgccc ccacgtggcc tgttcaggat gggttacaat
     1861 ggctggcatc tcctgtttca tccgcgcaaa tgagggtgaa tggatgcagt tggagaactg
     1921 taccgtgcat gtcaatatca agcgacgaat cgaacgaaca ctggttcgtg gaggcgaagg
     1981 tgacgacctt cgagacgaag gttcggaatc cgctgtttac accttgtctc tgaaggttga
     2041 cacagccggt tatcaggttc ttgagggtct gttccgtgca gggcaacctg ccttcatcga
     2101 tccattcctc gaccgtgaaa tgctcgtggc tgttcaggcg ttggactatg actctgacac
     2161 acaagtcatc cgattggtgt tagttgagga tgcggaggct tgagcatgga atccgaagaa
     2221 cgagatcttc tcgctgcatt gcgtgcattt gatgtccttc ttggagcagg catcggtctt
     2281 gaatcagtcc tgattaatct cgctcgaggt gggtatgggg caatcagcac cgacatggaa
     2341 cgaatcatga aaggtgtcaa tgatgggcgt cgtcttgaag atgaactgac aaaggctgct
     2401 actcggacga agtccactgg gtacaagcgc cttcttaaca ctctgaaaac gaatgtgact
     2461 tcgaataccg acctcattgt ggatctccgc cgtcaagccg atcgtgaaga ggaggaacgt
     2521 actgagcgga ttgagaagta catcgaagct ctcgaaggta tgcccacagg tctactcacc
     2581 gttggtatgc ttggtccgat tatgttgcca ttggtcgcag tcatgcccta cttattcaca
     2641 gtcccagttg caggtattac tgcaccttcg cccgccaccg caaacctgat ttcgatggct
     2701 ggttacacga tttctgtagt cataatggcc ctgattggcc tcaaggcaca cacgaaggat
     2761 cctggagttt gagaggtgag gatatgattt ggcagttgat ggagcgtctt aacgacaatc
     2821 ccgccgcaat tatcctgctt ccccttgcca tcatctgcct agggggggcg attccattga
     2881 tgcgtgagca tagtcggcgt cgtagcattg agcgtgctct tcctgagatg ttggagttga
     2941 tttccgctga actaggcgca ggacttggac ttgaacaggc attcgctgat gttgcaaaat
     3001 ctagaaatga cgaggcagga aagttactcg atgtcgctct tgaacgagct caagccactt
     3061 cattcagtgc tgctcttgcc cgtttcgcaa tcgaaactag aagcactatg gttcagcgtg
     3121 tggtaaattt gcttgatgct gcgcttgaac agaacgctcc gcttcaggat gtcacctatc
     3181 ggatgagcat tgagtacgag aaactcaata ctcttcttcg catgaaagag gagaaggtgt
     3241 ttggtcaagc ctttaccatg atcattctca tggcattgat gcttccagtg attaccggct
     3301 tcattgttgg cgtatttgca gggccagcta caggttatcc gttgggttca accttgaatg
     3361 ccctctacat cttttcagcg gctgctacag gtgtgactgt ggtgattagt ggtcgtatgc
     3421 tcgaccgatt gggccagtat gtatggaccg ctccactggg gatgttcatc tcgaccgttc
     3481 ttttccaagg cgtctatttg gtcgcaggga atctattttg agggaataac atggcagata
     3541 ttattgatca atacggcgac gtcatcatct acagtgaaga agggcatcct acaccatttt
     3601 acgaattcaa tgggcagatt gctgcaaacc cctacggtgt gttacaggtt cttctcgatg
     3661 acgatgatct tgaggaagtg atgtacaatg gtggaaagca gtgcgtgaag attgctcatc
     3721 gcaagcatgg aatgtgccgg accaacatct gggttgagga tgaagaaggc attcagattt
     3781 ccaagaatat cgcttcattc actgacgtcc ctttgggcga tggtccaggt atggttccaa
     3841 ttttcgacgg ccgtctaccc gatggttcgc gtgtcaatgg taccatccct ccagtatctc
     3901 ccgatggacc aaccctcaca atccgaaagt tccgcgaaga tccaatcact attgtcgacc
     3961 ttattcgttg ggggactgtt tcaccccgac tcgctgcgat gttctggact tgggttgatg
     4021 gtatgggcgc caagcctgca aatttcgtca tcgctggagg cactggttcg ggtaaaacca
     4081 ccacgttgaa ttgccttggg atgtttgttc catggtcaga tcgtgtcctc tcagtggagg
     4141 atactgcaga actctctatc catcacgacc actggctgcg aatggaaact cgtgcacatc
     4201 gcccggatgg tacttctgag attgacatga acgattgcct gaagtcaagc ctcaggatgc
     4261 gtccagatcg cgtgattgtc ggtgaggttc gtggtccaga agctgcaact ttactcatgg
     4321 cgatgaatac tggccacgat ggttcgttcg ggagccttca cgccaacacg gctaacgaga
     4381 cggtcaagcg tctagtcaat cccccaatgg cagttcccgc tattatgctc agtgcactcg
     4441 atttgattat catgcaggcg cgtttgaacg taggtggcaa gaacattcgc cgcatcactg
     4501 aggtggctga gattgcaggc atggaaggcg acacgccacg gctgaatcct atctggaagt
     4561 atgatgcagg tcaaggcaag attgtcgaga ccggtgttcc cagtaaggtt cgagagatta
     4621 tctgtgccgc aaagggctgt acacctgccg atttcgaagc gattgtccgg cagaaggagc
     4681 agattctcac tgatcttgtg aaccgtgaga ttcgtgatat tgaatctgta acgcgggtaa
     4741 tccagaccta tcacgcggca gtaaactagt caggcgcctt cttcggtcat cttacgaagg
     4801 cggtcaagga cagcatctgc agcatcgaga gtacgtcggg ctacctctgc ctcgtctaca
     4861 tcctcttctt cgttattgtc aagttcttcc acagttctag ctggcttccg tccgaatgat
     4921 tccagtactt cgttcagtgt ttctactaca ttggtgacgc gttcaggatc gagtgcaatc
     4981 tgtccaggta aagtgggcat ttgatcctca gagatgtagc ccatttcgac agcaagggct
     5041 cctgcggctg caatcagacg tgggcggacc tctggatggt ttgcatccca gcctcgtcgt
     5101 tcaaggaatc gaatcattag ggagtgttcc aatgaggtga attgtccatc atttctgcga
     5161 atgacagtct ctacgatgcg ctctaatgat tcgatttgca tctccattct ttcaagagtt
     5221 gcgcgagcgg tcgcatcgat ttcgtctact ctgcggagta ggaggcgaat ggctcggtcg
     5281 cgccgtgctg caacggggtc aacgttcatt tccatttcat tgagagaaat ttggaggtca
     5341 aagagagcgt ggatccgccc actgattgca gggagatcaa ggtctaatcc actctctcgg
     5401 gcatgatttt cgaatcccat ccttgcagca gggatatctc ctcgtgcgga gaggagggtt
     5461 tcttcaagaa catcaagaag ggagttacgc agttcttcaa accggcgaat tgcttgtctc
     5521 tctcgccaag atccagggag tagtgattgt gcctcttgct ctgcagctcg ccgttctgcc
     5581 atttctgcca caagatcaag gatagcatct cgcacaatcg aatgttgaac cgcgaagccg
     5641 cgtggtttga gatcttcaat gaatgccgtg atatcctcgg gggtctgatc gcctaatagt
     5701 aggaagtccc tgattagtga gcggacctct gcctcgcgac tttgtaggtc attcaatgca
     5761 atttctgcgc ctgcttcgat agtggagcta agcggccttg tgtcggccac gtgatcttct
     5821 gttgcctcat ccgggacaac ctcatcgaga ggagcctcta ccaccgtctc ttcttcaggg
     5881 gtatcttctt cgatggctgg cacatccatt gtgttctctt ggataggagt attctctact
     5941 ggaattggag cttctttctg gggggcaggg accttcgcag gtgcgaccgc tcctcgcttt
     6001 acagaccgct tgatacgccc ccatgcgcct tcttgggaag agagcacccc tcctacacgg
     6061 gcaaccaact gcgtcttgtt ccccgacctt ggcatttcta gtcgagcaca caattcgtga
     6121 aggtcatcac gattcatgtc tggtagtgtg tctatactca gcgtcttcgg gtcttggtga
     6181 acatgcagcc aaagacgttg tctcttgtcc ttgtgcgatc ctgaactctt gattccaaac
     6241 accttgagga cgtctgtaag gtgccgattc gacatgtcct ggatgccatc ccacgccagt
     6301 tcttcttcgt caagaatcaa ttgttcgata agccggacac gtaaccgttc gacagaccct
     6361 gtacgagaga tactgtggtt cgcagcaatc tccttcagtt cttcaagacg gcctgtctgg
     6421 atagtcacca gaaggtctgc ccggtctacc atcgatgccc ctcagggttg aggttccgcc
     6481 tcgtagccat tgtatatgtt ccgcccctta tgagggccag cgcacggttc tgagggttga
     6541 actcggtgcg gcgtcaaggt tggatgaaac cgtcttcatc agtcatgaac cgttctagta
     6601 tggaattcca atcgttcatc atgaattgaa tatcgacgcc gagacggctt attggaccga
     6661 tacgctcgat agaggtggtg cgtaatccat ccctgctgag gagttcgacg ataacctcgt
     6721 agcgtggctg gtcatccacc tccccttcag gatcaatgag attatcgagg ataaagaggt
     6781 cattcactcg ttctgcttct gtaaggattg aaccgattcg ttgttgccgg tagtggatgc
     6841 ccacaaattc gtggagttca gcaggtgtcc gatgcataat tgtccgttgt actatccacg
     6901 cattgaatgc atgttcatct gtccaatca
//
LOCUS       DUKB01000079            4179 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_305517, whole genome shotgun sequence.
ACCESSION   DUKB01000079 DUKB01000000
VERSION     DUKB01000079.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4179)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_305517"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..620
                     /locus_tag="HA345_02685"
     CDS             <1..620
                     /locus_tag="HA345_02685"
                     /inference="COORDINATES: protein motif:HMM:NF019887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD hydrolase family protein"
                     /protein_id="HIH84295.1"
                     /translation="LEAAGVSVALATGNVRPVAWALSRHLGLTGPLICENGGVVWDWR
                     REKEVEYLADGKRARLACEWLATRIQGLNPAGISSNAWRESEWCLYTQEDNEAIEREL
                     ALSEWNDLEVVRTGFAIHVNEPGMNKGAGILHALGPLGIDPADCIGVGDSPNDLPMFA
                     TVGWAVAVGSAFPEVKAAANAVASDNLIGGHAVMALIEEILSLPE"
     gene            652..1353
                     /locus_tag="HA345_02690"
     CDS             652..1353
                     /locus_tag="HA345_02690"
                     /inference="COORDINATES: protein motif:HMM:NF021371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2071 domain-containing protein"
                     /protein_id="HIH84296.1"
                     /translation="MPDWPHALNQEWRHLTFLHWKVDPERLAPYIPDGLEIDLHDGEA
                     YVGTIPFLMKNIRPRWAIPVPGVSTFPEFNIRTYVKNGGKGGVLFLTLEAQSRITCAY
                     APRAYGLPYQYSKGRVKVQGSTHRWDTKRKGGTHGFSGFCSPKGEEMNAEKGSLEEFL
                     FERYSLYVECAGNLCIAHTQHDPWVYTCGDATILDNALTESFDLGIADPLTPDYVHMS
                     DGVFVHTWNNEVVPR"
     gene            1350..1745
                     /locus_tag="HA345_02695"
     CDS             1350..1745
                     /locus_tag="HA345_02695"
                     /inference="COORDINATES: protein motif:HMM:NF016056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF393 domain-containing protein"
                     /protein_id="HIH84297.1"
                     /translation="MKKLGVERDVLLLDGDCGLCHRLAQFIDKRRATDADLAYRPILS
                     EDAQALIATFSEKQQMADTVYIVRNGKSYIRSAAGIRALLYMKWYWRMWFPLVWLVPL
                     PLRDIAYVVIAKNRHRVFSKPDVCAFRID"
     gene            complement(1759..3744)
                     /locus_tag="HA345_02700"
     CDS             complement(1759..3744)
                     /locus_tag="HA345_02700"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013043286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HIH84298.1"
                     /translation="MLTVDVGLDESHEYAMGISVGEIIHNVHGRKSGAVAATVDGQEV
                     DLSHELSSDCSVRPILGNSNEGLYILRHSCAHLLAQVVLEFFPDAKPTIGPPIENGFY
                     YDFHMDPISEEDLRAIEKRMKALVKQNLKVEREEHDNASLREMFAHNAFKIEIMEDKI
                     GEGNGSSVYRQGDFVDLCRGPHVPSTAHLRWFKLTSMSTAFWRADASKESLVRIYGMC
                     YASKEDLQARETLLREAAKRDHRKLGKDLQLFHIDEMVGQGLILWTPRGAVVRDELQR
                     FISKHLNRQGYHQVFTPHIGKLDLYRTSGHFPYYQDSQYPPIIERDTMKKLADEGCSC
                     GELSNLMSEGEIDGYMLKPMNCPHHIRIYASQARSYRDLPLRLAEFGTVYRWEQSGEI
                     SGMTRVRGFTQDDAHLFVTEDQIEQEVLGCIELVKIIFGTLGMEDYRVRVGLRDPDSS
                     KYVGDPERWDKAEVACRNAAKSLGVEFSEEPGEAAFYGPKIDFVVRDVLGREWQLGTV
                     QVDYNLPERFDLSYTGSDGEKHRPVMIHRAPFGSMERFVGVLIEHFGGMFPTWLNPTQ
                     AHILTISEKHIDYATEIASKLKSSGVRVEIDTGDDTIGKKLRTHRAMRPAYILILGDE
                     EMSNGTISYMGPDREQVNGIHYDDFIEEICASISHDS"
     gene            complement(3811..4140)
                     /locus_tag="HA345_02705"
     CDS             complement(3811..4140)
                     /locus_tag="HA345_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84299.1"
                     /translation="MGPPPSPPIVDSPPSPPMEIAPSPEITPVIPEEVLPAPVVADLS
                     ALVEVSSKEEENIEEESVPEPEPEPSNPEFIPVDADDFMSGFDDEWDESAPVRVSDID
                     DTEDMDW"
BASE COUNT         1083 a         1057 c          987 g         1052 t
ORIGIN      
        1 gactcgaagc agctggagta tccgtagccc tagcaactgg aaacgtccgc cctgtagcat
       61 gggcactctc tcggcacctt ggcctgactg gccctctaat atgcgagaat ggaggcgttg
      121 tctgggactg gagaagagaa aaagaggtcg aatatcttgc agatgggaaa cgggctcgcc
      181 tagcttgtga atggctcgca acgaggattc agggtctcaa tccagcaggg atatcatcca
      241 atgcttggcg ggaatctgaa tggtgcctct atacccagga agacaatgag gcgattgaga
      301 gagaactcgc tctttcagaa tggaatgatc tcgaggttgt acgcactgga ttcgcaattc
      361 atgtcaatga accgggcatg aacaagggtg cagggattct tcatgccctt ggcccactcg
      421 gaatcgatcc tgcggactgc ataggtgtcg gcgattctcc gaacgacttg ccaatgtttg
      481 ctactgtagg ttgggctgtc gctgtaggtt cagcattccc cgaagtaaag gcagctgcaa
      541 acgccgtcgc gagcgacaat ctcatcggcg gacatgcagt gatggcactg attgaggaaa
      601 ttctatctct tccggagtga gaccatgcgg actgatcatc tcccgtttcc gatgcctgat
      661 tggccccacg cactgaatca agaatggagg catcttacgt tccttcattg gaaagttgat
      721 ccagagcgat tagctcccta catcccagat ggactggaga ttgaccttca tgatggagaa
      781 gcctatgtcg gcacaatccc attcttgatg aaaaatatcc gtccacgctg ggcaatccca
      841 gtccccggtg tctcgacttt tccagaattc aacatccgaa cctatgttaa aaatggaggt
      901 aaagggggcg ttctcttcct gactcttgag gcacagagtc ggattacctg tgcctacgca
      961 cctcgagcat acggcctccc ctatcaatac tcaaagggac gtgtcaaagt gcaaggatca
     1021 acccaccgat gggacactaa gcgaaaagga ggtacgcatg gattctctgg attctgctca
     1081 cctaaagggg aggaaatgaa tgctgagaaa gggtcattgg aagaatttct ctttgaacgc
     1141 tattctctgt atgtagaatg tgcaggaaat ctctgtattg cccatacaca acacgaccct
     1201 tgggtctaca cctgtggaga tgccactatc cttgacaatg cactaaccga atctttcgac
     1261 ctcggaattg cagacccact aacacctgat tacgtccata tgtcagatgg tgtgtttgtc
     1321 catacttgga acaacgaggt ggtgccaaga tgaaaaaact cggagtcgaa cgggatgtgc
     1381 tgctattgga tggagactgc ggattatgcc atcgattagc acaattcatc gataagagaa
     1441 gggcgacaga tgccgatctc gcctatcgcc caatattatc cgaagatgcc caggctctga
     1501 ttgcgacttt ttctgagaaa cagcagatgg cagacacagt gtatattgtt cggaatggta
     1561 aatcctacat ccgatctgca gccggaattc gtgcactact ctacatgaag tggtactgga
     1621 gaatgtggtt cccgttggtc tggttggtcc cgttgcctct tcgagatatc gcatatgttg
     1681 tcattgcaaa gaatcgtcat cgagtgttct caaagccaga tgtgtgcgca tttcgcatcg
     1741 actgatgccc taaactcatt aagaatcatg gcttatagat gcgcatattt cttcaatgaa
     1801 atcatcataa tgaataccat tcacctgttc acgatccggg cccatgtagg atatagtacc
     1861 attactcatc tcttcgtcac ccagaatcaa aatgtaagcc ggacgcatcg ctcgatgagt
     1921 tcgaagtttc ttaccaatcg tatcgtcgcc cgtatctatt tctactctca caccagatga
     1981 tttgagtttc gaagcaatct cagtagcata atctatgtgt ttctcagata ttgttaggat
     2041 gtgagcctgt gtcggattca accaggttgg gaacattcca ccaaagtgct caattaacac
     2101 tccaacaaag cgttccatcg agccaaatgg ggctcggtgg atcatcacag gacggtgctt
     2161 ttcaccatct gaacctgtat aggacaaatc aaatcgttca ggtagattat agtccacttg
     2221 aactgtgccc aattgccatt cccgaccaag aacatcacgg actacaaaat cgattttagg
     2281 gccgtagaag gctgcttctc ctggctcctc actaaactca acacccaatg atttcgctgc
     2341 atttcgacaa gcaacctctg ccttatccca gcgttcagga tcgcctacat atttactcga
     2401 gtcaggatct cgaagtccaa cacgaacacg gtagtcctcc atgccaaggg tgccaaagat
     2461 aatcttcacg agttcgatgc atccgagaac ctcctgctca atctgatcct ctgttacaaa
     2521 cagatgcgca tcatcttggg tgaacccgcg cacacgagtc atgcctgaaa tctcgccgct
     2581 ctgctcccaa cggtatactg ttccaaattc tgcaagacgg agaggaaggt cccgatatga
     2641 tcgggcttgg ctcgcgtaaa ttcggatatg atgtgggcaa ttcatcggct tgagcatgta
     2701 gccatcgatt tcaccctcac tcattaggtt cgaaagttca ccacaagaac agccctcatc
     2761 ggcgagtttc ttcatcgtat ctctctcgat aatcggagga tattggctgt cctgataata
     2821 gggaaaatgg cctgaggtac gatacaggtc gagttttcca atatgtggtg tgaacacctg
     2881 atggtagcct tgacgattga gatgcttcga gatgaagcgc tgaagttcat cacggacaac
     2941 agcgcccctt ggagtccaga ggatgagccc ctgacctacc atttcgtcaa tatggaagag
     3001 ttgtagatcc ttaccgagtt ttcgatgatc acgcttcgct gcttcccgga gtagtgtctc
     3061 acgggcctgc aaatcctcct ttgaagcata gcacatacca tagattcgga caagggattc
     3121 tttcgatgcg tccgctcgcc aaaaagcagt actcatacta gtcagcttga accatcggag
     3181 atgggccgtg cttggaacat gcgggccacg acaaagatca acaaaatctc cctgtcgata
     3241 gacggaagat ccattgccct ctccaatctt atcttccata atctcaatct tgaacgcgtt
     3301 gtgagcaaac atctcacgta ggctcgcatt atcatgctcc tctcgctcga ccttcagatt
     3361 ctgcttgacc aaggccttca tgcgcttctc aatggcccgt agatcttcct cactaatcgg
     3421 atccatgtga aaatcatagt agaagccatt ctcaatcgga ggtccgattg ttggctttgc
     3481 atcagggaag aattcgagga ctacttgtgc aagtagatgg gcacatgaat ggcgcaggat
     3541 gtacaggcct tcgttcgaat taccaagaat tggtcgaaca ctgcaatccg acgaaagttc
     3601 gtgagacagg tcaacttcct gaccatcaac ggttgcggct actgcacctg actttcgacc
     3661 atgtacattg tgaataatct ctcctactga gatacccatg gcgtattcat gagattcatc
     3721 caaaccaaca tccacggtca gcatcgacat atcaccgcct cattccgtgg ttcggtccgc
     3781 gcatcaagaa gcattcgccc gaaaagacac tcaccagtcc atgtcttcgg tatcatcaat
     3841 atcagatact cgaacaggag cagattcgtc ccactcatca tcgaatccag acatgaaatc
     3901 atccgcatct actggaataa actcaggatt cgatggttca ggctcgggtt caggtactga
     3961 ttcttcctcg atattttcct cttctttaga tgacacctct accaatgccg ataaatctgc
     4021 cacaactggc gcaggtagca cttcttcagg gattactggg gtaatttcag gagatggtgc
     4081 aatctccatt ggaggcgaag gaggagagtc cacaattggg gggctaggag gtgggcccat
     4141 catcggggga cctggaggag gactcatcat ctggggacc
//
LOCUS       DUKB01000080           17624 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_65532, whole genome shotgun sequence.
ACCESSION   DUKB01000080 DUKB01000000
VERSION     DUKB01000080.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 17624)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 17624)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17624
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_65532"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="HA345_02710"
     CDS             <1..369
                     /locus_tag="HA345_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84300.1"
                     /translation="YGRTTLVYGWGGALLVTLVIIAFLNQSSRAFEGRHRVVIRSDEV
                     TVSGRFLGLFRLPAESFSLDDFRDIDATQAWGLTLLFGSRRIRCDVPAIEGQCLIGEM
                     IDALRDVGAIPYFAILGEEE"
     assembly_gap    394..697
                     /estimated_length=304
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(700..784)
                     /locus_tag="HA345_02715"
     tRNA            complement(700..784)
                     /locus_tag="HA345_02715"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(746..748),aa:Leu,seq:taa)
     gene            890..3832
                     /locus_tag="HA345_02720"
     CDS             890..3832
                     /locus_tag="HA345_02720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84301.1"
                     /translation="MSGQHAVNRSARPALYLVMVMLLALIPVSSPGGAFPLQETPSPN
                     RVGSQMYDYQIYVASPNSTAGGDGFLTTKEPQSGGQEEIVVSDETAQFKSPRMLTDLS
                     VLGYNGLVRIKMFHTVEATNPGVNATYTFTLVNGGSSWSDTLRIEACERTLFNSCPVL
                     EASAEISIPADGFDIDEDEQLVLEISADMEGCQDQGGNGLPVNSDCSATLFFNDIEGT
                     SDHTKIEFKSNALSESLLIVQRDGAELIDGAQLEWFPNDSPDNRIMQFRFQVESAFGR
                     FDINSVRLSLVDPSGIMKVDQPLSDSLDGVDDTFWAISGMYDWEYSRGSMTPGEYLPS
                     LEVTDIQGHTIVIEHDDLVMKQFGVSLLHGDDIDRSVEYIAPSQITVIPLQLQHRGSS
                     GQLDVDLQVITNFNSNWNVSFDAPGGYLLNEGGAIVNPILTIESPQDLRNAPPQLVIR
                     AIGEAIVEGSPEIVATETLYLDLEKVDTYAPPLTSIWNENRTQQYDNSSRPDSFDTSV
                     PRFVEDGEFTVFIMEIWNNGFDEDEFRIDILERSKAIIQIVDNDTGVVIVEDLTDGTY
                     HTDSINRHMTEVLQIRVKPSGDRDDPDQGLIRFEVASEGNSSKVSEVEFTVQRTFGVR
                     AEPVFDCDSVPLGTVNQTMCTDGMSMRIRVTNSIADSSTSTNWRLINPADLQRNVDSD
                     ESYSQWEFKIVDNSGDSIPYLTLAPQQSGEVMLEIDPPDQVEMDSHVLYLRIIEADVE
                     DDPAYFDMQFIVEIGPGDVQLEIVQVSADAPINAGEERDLVFRVKNLGNQAQFVYVDV
                     DCSSSSTVCTGWDSDIRGTGNLLTIEAYGQADFTVEITSPSNARSGERVEFTIVAEPQ
                     TLAGQGSVDDEQISSANLVVTMTVEIPDIITALMNEIVNPSPTMLLVFIVALVTIVLG
                     VQNRRNRRRLANLAYEDMEEEEVDDDGDAEDDEFDFELPAALGSEEDPPEDEFEIEFD
                     EDDIELIE"
     gene            3918..12869
                     /locus_tag="HA345_02725"
     CDS             3918..12869
                     /locus_tag="HA345_02725"
                     /inference="COORDINATES: protein motif:HMM:NF013961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84302.1"
                     /translation="MSGAQFVVRNPESRAKARSVFLVMLMVISSLAAFEFAAWEAYAS
                     SDADGDGLTYGLEFLLNTQPQDWDSDNDELPDGWEFFHGLNPLDASSLTVNGSLGDPD
                     GDSLSNKDEYLYGIPSGWDNPNTPNVLDNGVWWNGTVPTRNWDEESAMQANQGAGSDG
                     ADEDPMGNICADGMDNDRDGAVDSADSDGDGDADCSSDDDDGDGSIDEDPDGYDTDND
                     GMNDGWEVANGLDPTVRTGVDGPNGDPDGDGLVNLYEYVNPTWTTQNSGTPYFMPGAP
                     SQQRTETESPCNPVLGIGPGGCATSTAEVDGVTSTNPQSPDTDGDGLNDSYEALTLLT
                     DPTDSDTDGDGILDGTEVNGQYGNPAQASDPRDNNTDDDPFDDGDEDTNGNGFVDSNE
                     TDPTRAEDSGDFDGDGIENWEENLTCTMWDVADTDFGGAADGFEILAGVNTDPCRSTF
                     DYVTVYSNYDASSQVLQVANATGFGAGFFEWRPTAPARTGFYNLSNGSLVPFTFTGAD
                     DVSNPNRLVGVSVPPPATTQTVIHKNGSWCWDASIQPGNNDAWCDDDYADTDEDGLAD
                     WEESFGFWGYQSDPYDVDSDNDTVNDLDEIINGTDPQEPCDNNRDDDGDGLNNYFENN
                     TGCALFYIPGMGGNGSLDTYLTNYQQADTDVGGVWDGQEYLDGTNPQNDPSDDLNPAD
                     TDGDGIPDAIENNTGTNWLDPDTDGGGLTDYQECPPQFWSTLCAGSGQDPFDPTDDII
                     QNQVAFWANNTTVNVDPALTHYWRVNTYDFYTGVDYGVNSSLIVLNPMTPGFSDNNWI
                     ASSQFHNNSTTWEYTFPFTINVNSNLPGHWSMTDYSSWSDPAAGLNHTNYTHDIRITD
                     APIDFYFGNAPEIWFSDSVRGNSTGYQSSSYATDVPDYFTDMTLLESEVYNITQSILT
                     SSGALSAYDKMDVLVDFIENGNATFTPRLNYDGSGYPQGGGPDFTHFLLVDSKEGTCD
                     EWATVLTSMARLSGLPARKVTGFVDGSWHGTGYEVFGFNSASWVEVHMQTNSALGNAD
                     MGWVPFDACPPAEDVEILNATFGPMIVDRNGTSPQLFLNGTMVYSANQTAVPNLVVDL
                     YLVPLSEVGAVPGAASQPSRLVGTAITDVNGNFSAKGIPPEFIPPGYGGLVLQTVPSG
                     YVGSNGLFDNYIVNVTDNVTFIVESPLPVNEPVFGAGSNTTMSGRVELTSPPAGDLSL
                     IDLWDIDGDGQPDGFSQVYFNWTSTISGPQVLTASIGPNGFFEITIPVDENESQGLVS
                     ATLEFPGWHEDDLNNGSTPLYHIRPTTQVVSMNITPSPNLDIVLEGPSSNNSLLEIND
                     NITMNGTVLSRGLNPVPMEGTLFLQMRVNGSGTPFVDIANWELNSTTWSGNPGNFSIT
                     WFMDPALVPITPGYIDARFIFDSATLEANDEVLMPPGYGLKSYITFDYFLDALPRDQL
                     GFISISMFDHMGTYEQPFNGTYETEIDGVLVNTTVDPVDGGFGFEYTPPLVPAGDYPL
                     WINYSGSQWYYPATNNSTIRIQGLAAVSAVLGQSWTHIGGTNYVTGDIRDVNLTGSPL
                     VLGNNSSISAILEIPGTGPSGPMGEPPAPELIPLGGTWLDVANGTYNLSFTVPTSVGA
                     GVYSLNIEADFNSAALAGGAYFYTEEGISIDIGVESEAVLVAIDPPSTVTAGDILVVN
                     ASVRDVADGSNITGAAVQFIWDWDGPNNQSLQSVTTGSPDGIARFNPAIPASAEPGYY
                     TVRILMADDVTDPLSTGSARWIGNHTDLNITVLVPTIISNLVITPPTFLTAGSNFQLV
                     GQVEDAIDPNRNFSGRIDITIFFEGNSSEVLISSFTTAVNGSFNLTVPTDPSGDGLSS
                     GNKTLVVGVLEGSNPFYLPSNITQNVLVKGVTDFTQTTPLIPIVVNRGDPIDFGATLV
                     EASDNNRALGNQTIGALFHDTSLPTEVTNDTGVVRFNFSIPDTHPLGLVDMTLSYAGN
                     FTLLGTNRTFSTVTVRTITILVVDPIVANPIAGGTFNVTGTLTSENGSGIIDRNGNPL
                     LPSLVITIDGFSDTFTPTNGTVYDGNWTATITLDQTFPRGTHNLNASFTPTVNYFLGS
                     NNGTTFDSRGYTILDFADPLDLDPERRTVRGNNVTVGLSLFDNAGDAVENATVNISID
                     SLTSFDIMTDSSGFAVGNFSVPSTWPVGFMTINATYDGLAGTTGVAGDATFTRVVILA
                     PTVLTVDSVEGDLVAGQMIYINGTLLDENGAALLNQTGAPVGGLVHLAMDGIDTGTST
                     IVQSDPTTGSWSIAYMLPLDTTPGTHNVSTTFLGGFLWVDPMGEGDSVNPEFYLGSFA
                     SFEFDVSVPTEVRLFGGGTEVVREDLLSLVGVLFDVAERPVPGQNLTVWMNGQFLTNV
                     TTDVEGSFSILYPVPLDMALGTQTVEVRFAGAPLYLPSTSSTTFEVFAPTVLTVDALD
                     TAAVGDAVMITGTIRDNLPDGWIAGHFVTVRVDNSIIGTVTTESDGSWNLSWIVGPAF
                     SIGDHLILAYAEPQGYYLGGEANTSITIKHNAIFTGINLENSGYATRGETWNLSGSLV
                     DGDTSPQIPIEGATVIIEVDGQQITTALTDANGRFSVEIPVEFSSDRGAHTIRVSYEG
                     NDQFIGDDAEVTAYTWADITIEILGVSDNNIRSNASHPIEITGRVLEVGGTGNVVSGA
                     SLVLLWEGSPETTAVVSWDNATGQFTITMVGRAPMQADIQFDVQVAQDDVRWFNSGEE
                     IGIDAFLMIPASFVAEPVTVQLDSREIVGIVRVVADDNGLPLSNISISAILSNQSSEL
                     TQFGKLTDEFGIFEYVFVSQEPLPPFSDQAHWGQFNITLDSTSDVIAPIDRGDLLNLK
                     VDLQYEQLEEVSSGLSTTTIAFLVILLISASVVGFRLRNRKTAIEEMQDIFSYTAELL
                     AAGDSIREAIFNCYEDLCLVLMQSGFLRRDFETVREFEVAIRQALPIRESALEALDTV
                     FEEARYSSHEMGEQHTATAQQALANVVSEIQGIEEVPGR"
     gene            complement(12876..13322)
                     /locus_tag="HA345_02730"
     CDS             complement(12876..13322)
                     /locus_tag="HA345_02730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84303.1"
                     /translation="MEKVEWTPVVLDSENEDETPAGLEMDASALHQRFIRRDLGSLDA
                     AIQADAFVRHTGELVEMTREAGARILASELSGASLDATPMHDGIHIHMKEVTVDGIKV
                     FTGYVDATEFIRIDREGLESIVTPLPSGISIANARFTDGGLDIHLE"
     gene            complement(13363..15360)
                     /locus_tag="HA345_02735"
     CDS             complement(13363..15360)
                     /locus_tag="HA345_02735"
                     /inference="COORDINATES: protein
                     motif:HMM:NF016724.1,HMM:NF018483.1,HMM:NF024703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HIH84304.1"
                     /translation="MATSFSFVAHDVLRDSQREMIEDALSTLEENGYLFAAAPTGIGK
                     TAAALSATLARATNHPQGKKTVLFMTGRQSQHRIVVDTVRKINARINGQKVRLVDLIG
                     RDSMCVDVDRFTGRCNCEFGINDSILHDAREGLKTYILEEPRHVDDVIKQGKQRKVCS
                     WTCARQCAKECDLIVLDYNHVFIDKVREASLESMGVELSNSILIVDEAHNLPNRIRRG
                     LERRLTAKVLRDCVSEMQEHRGKEDEAVVKALEEGGGAEAWTGDAEDAALAEKALLRI
                     RGEVGKHLLDLKRVLGEDSELMTEPEELLGIFQASLEETLDEPMTMNRFISTLESVRV
                     EIDESLDTDPEIACHRLGELLNILHTRQGDSALATVFDILGEEGRITTHLLDPGVVAR
                     PLLKEAAGGILMSGTLFPPSMYGDILGMPEKRAVAYKEYSSPFENDRRPVILATDVTT
                     RYKDRSSANTRKIREHIHGLLRQTPGHVAVFLPSYNMLEEIIEDGSWPGRHLIVEERT
                     WSKSRVQDVLDRLRRSRDSGQRCLLAGVYNARLSEGVDYEGNILDAVICVGIPMAPPT
                     ASNQALRDYISDRFGERNAWKYSAAQPAMNAILQAMGRAIRKAKDRAVVLVLERRVGD
                     RGYKACLPTGLNMFHTGEPEATERLVRRFFQRHPEPARNTE"
     gene            complement(15764..16138)
                     /locus_tag="HA345_02740"
     CDS             complement(15764..16138)
                     /locus_tag="HA345_02740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84305.1"
                     /translation="MASKSPMVSLRIPEDHLMMLEQLVGFDGMRNRSDVIRHAVRLLL
                     ESGPSRAVGGTVKVDLGPDLTEKLDMFCQINGDTPETVTRYALRDHMNAVMDQGETLQ
                     TKMEQRLKNLHDKSRQNEDHTA"
     gene            complement(16223..16966)
                     /locus_tag="HA345_02745"
     CDS             complement(16223..16966)
                     /locus_tag="HA345_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84306.1"
                     /translation="MDGEIYPPSKPRHTSKNLLGFVAPWKDASGRLLNPPEILRTRRF
                     TIAYLVIVWIYVMLIDEALEGSLFYDLRIISEQIARMDPNELTTNPLIFLFSLLISPF
                     AHWDTVHAMYVTAGIMFFLQSFEAHNNWKSAAIIFIGTSALTSILMAIFYNVGFALYP
                     DIELFSYVMSRSFRGGSIGMFGALGALAYHAKKPQFPLILVFLFEVWNYTSYGTDAAI
                     SIGHASSTLIGLISWKWWNENRKREDEEE"
     gene            complement(17040..>17624)
                     /locus_tag="HA345_02750"
     CDS             complement(17040..>17624)
                     /locus_tag="HA345_02750"
                     /inference="COORDINATES: protein motif:HMM:NF013933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HIH84307.1"
                     /translation="FALSIGLILAIGPQNIFVVRQGLLRSHIFVVCLLCSLSDALLII
                     VGVLGLGSILAGIEGADFLISIAAALFIASYGVMRIRSSMNPVGMSISDEKAQGLAST
                     ILTLLAFTFLNPHVYLDTVILIGGASSRYSVDDRFTFAFGASLASFLFFFALGYGARR
                     LASVLDKPDAWKFIDRGIACVMFGIAGSIMLPFL"
BASE COUNT         4179 a         4119 c         4256 g         4766 t
ORIGIN      
        1 tacgggagga ctacacttgt gtatggctgg gggggcgctc tcctcgtaac tctagtcatc
       61 atcgctttcc ttaatcaatc ctcaagagct ttcgaaggaa ggcatcgcgt agtcatacgt
      121 agtgatgaag tcactgtatc tggccgtttc cttgggcttt tccgattgcc tgcagaatcc
      181 ttctctctag atgatttccg ggatatcgat gctacacagg catggggttt gacactcctc
      241 ttcggttcaa ggcgaattcg atgcgatgtt cctgcaattg agggtcaatg cctaatcggt
      301 gaaatgatcg atgcattacg ggatgtaggg gctattcctt acttcgcaat attaggcgaa
      361 gaagaatgag gtgcgggggg agggattcga accnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnggt gcggggggag ggattcgaac
      721 cctcgaaacc ttacggtgcc gggacttaac cccggtgcct ttgacctggc tgggcgaccc
      781 ccgcgattct ccgttgtcct tctcattgaa gaacaaagcg acgtgaatgc ccctgttgcg
      841 gacgctggcc cgcaaatcgt ttaacgcccg gagggtcacc cgttgtctga tgagcggcca
      901 gcatgcggtc aatcggtcgg cccggccggc cctatatctc gtaatggtaa tgcttcttgc
      961 ccttattccg gtttcatctc cagggggcgc ttttccgttg caagaaacac catctccaaa
     1021 tcgtgttggt tctcagatgt atgattacca gatctatgtt gcatctccta attccactgc
     1081 aggaggggac gggttcctga ctacaaagga gccacagagt ggtgggcagg aagagattgt
     1141 tgtaagtgat gaaaccgctc agttcaagtc gcctcgaatg cttaccgatc tctctgtgtt
     1201 gggatataac gggctggttc gaatcaagat gttccatact gtggaagcaa ctaatccggg
     1261 agtcaacgca acttacacct tcactttagt gaatggaggg agttcgtggt ctgatacgtt
     1321 acggattgaa gcgtgtgagc ggactttgtt caatagttgc cctgtcctgg aagctagtgc
     1381 cgagatcagc atccctgctg atggattcga catagatgag gatgaacaac tggtcttgga
     1441 aatatctgca gacatggaag gatgtcagga tcagggtggc aatggtttgc ccgttaattc
     1501 tgattgttca gcaaccctat ttttcaatga catcgagggc actagtgacc atacgaagat
     1561 tgagttcaag tcaaatgctt tgtctgaaag cctactaatc gttcagcgcg atggtgcaga
     1621 actaattgac ggtgctcagt tggagtggtt cccgaacgat tctccggata atcgaatcat
     1681 gcagttccga ttccaagtag agagtgcctt cgggcgtttc gatatcaatt ccgtccggct
     1741 cagcctagta gatcctagtg gtattatgaa ggtcgatcaa cctctcagtg attcacttga
     1801 tggcgtagat gacacctttt gggcaatatc tggaatgtat gactgggagt attcccgcgg
     1861 ttcaatgact cctggcgaat atcttccctc gctcgaagtt acagatattc agggccatac
     1921 tatagtaatc gaacacgatg atcttgtcat gaagcagttt ggagtatctc tcttacacgg
     1981 agatgatatc gaccgttcag tagaatatat cgctccatct cagattaccg tgattccatt
     2041 acaactccag catagggggt cttcggggca gttggatgtt gatcttcagg tgattacgaa
     2101 ctttaacagc aattggaacg ttagtttcga tgcccctgga ggatatcttc tcaatgaagg
     2161 tggagctatc gttaacccga ttttaactat tgaatcacca caggatcttc gaaatgcgcc
     2221 tccgcagtta gtgattcgcg ctatagggga ggccatcgtt gagggttcgc ccgagattgt
     2281 agcgacagaa acattgtatc ttgacctcga gaaggtggat acctatgcac caccattgac
     2341 gagtatttgg aatgagaatc gtacacaaca atatgataac agttctcgcc ccgattcatt
     2401 cgatacgagc gtccctcgtt tcgtggaaga tggggagttt acagttttca ttatggagat
     2461 ctggaacaat ggattcgatg aggatgagtt ccgaattgat atccttgaac gctccaaggc
     2521 aatcatccag attgtagaca atgatactgg cgttgtaatt gttgaagatc tcactgatgg
     2581 gacatatcac actgactcaa tcaatcgaca tatgactgag gtcttacaga ttcgtgttaa
     2641 gccatctgga gatcgtgatg atccagatca gggtctaatc cgtttcgaag ttgctagtga
     2701 aggcaattca agcaaggttt cagaggtgga atttacagtt cagaggacat tcggggttcg
     2761 ggcggaacca gtatttgatt gcgatagtgt gcctcttggt actgtcaatc aaacaatgtg
     2821 cacagatggc atgtctatga gaatccgcgt taccaacagc atcgctgatt cttctactag
     2881 taccaattgg cgtctcatta atcctgcaga cctacaacgc aatgttgact ccgatgaatc
     2941 ctattcacag tgggagttca agattgtaga caacagtggt gatagcatcc cataccttac
     3001 tctcgcgcct caacagtccg gcgaggttat gctagagatt gaccctcctg atcaggtcga
     3061 gatggacagt catgtccttt atcttcgaat aatcgaagcg gatgtggaag atgatccggc
     3121 ttatttcgat atgcaattca tcgttgaaat cgggccaggc gatgtccaac tggagattgt
     3181 ccaagtatct gcagatgcgc cgattaatgc gggcgaagag cgggatctag tattccgtgt
     3241 caagaatctc ggtaatcagg ctcaatttgt ctatgtggat gttgactgct catccagttc
     3301 cactgtttgt actggatggg actcagatat tcgcggtact ggtaatctat tgaccataga
     3361 ggcatacggt caagcggatt ttacagtaga aatcacttca ccttctaatg ctcgttctgg
     3421 tgaacgagtt gaattcacca tagtcgctga accacagact cttgcaggac agggttccgt
     3481 tgatgatgag caaatctcct ctgctaattt ggtagttacg atgacagtcg aaatcccaga
     3541 tatcattaca gctctgatga atgagattgt caatccaagt ccaaccatgc ttcttgtctt
     3601 catcgtcgct ctagtgacta tcgttctagg tgttcagaat cggcgtaatc ggcgtcgcct
     3661 cgctaaccta gcatacgagg atatggagga ggaagaagtc gacgatgatg gtgatgctga
     3721 ggacgatgaa ttcgatttcg aattaccagc ggctcttggt tctgaagagg atcctccaga
     3781 agatgaattt gagattgaat tcgatgaaga tgacattgaa ctcattgaat gagaaaccgc
     3841 tttactcgtg taggcgattg aactacgctc catttccctt aagtccctac gtgagcccct
     3901 gaggggtggt tagggtcatg tctggtgctc agttcgtcgt tagaaatccg gaatctcgcg
     3961 caaaggctcg ctcggttttc ctcgtcatgt tgatggtcat ttctagcctc gctgcctttg
     4021 agttcgctgc atgggaagca tatgcatcat ctgatgctga tggagacggt ttgacttacg
     4081 gcctcgagtt tcttctgaat acacaaccgc aggattggga cagcgacaac gatgaacttc
     4141 ctgatggatg ggaattcttc catggtttga atccgcttga tgcgtcaagt cttactgtga
     4201 atggttctct tggtgatcca gatggggaca gcctgtccaa caaggatgag tatctctacg
     4261 gcatcccatc tggttgggat aatcccaata ctcccaatgt gcttgacaat ggtgtttggt
     4321 ggaatggaac tgttcctaca aggaactggg acgaagaatc agctatgcag gctaaccaag
     4381 gtgctggttc agatggtgct gatgaggacc caatgggtaa catctgtgcc gatggtatgg
     4441 acaatgaccg ggatggggca gttgactctg cagacagtga tggtgacggt gatgccgatt
     4501 gttcatctga cgatgatgat ggtgacggga gcatcgatga ggaccctgac ggttacgata
     4561 cagataatga cggtatgaat gacggttggg aggtcgctaa cggtctcgat ccgacggttc
     4621 gaaccggtgt tgatggccct aatggtgacc ccgatggcga cggtctcgtc aatctgtacg
     4681 aatacgtgaa cccaacttgg accacgcaga attcgggtac tccttacttc atgccaggtg
     4741 ctccaagtca gcagaggact gagacagagt ccccctgcaa tccggtccta gggattggtc
     4801 cgggtggctg tgcaacatcc actgctgagg ttgatggagt cacatcgact aatccacaga
     4861 gtcctgatac tgatggtgat ggtctaaacg atagttacga ggcacttaca cttctcactg
     4921 atccaactga ctccgatacc gacggagatg gtattctcga tgggacagag gtcaatggac
     4981 agtatggaaa ccctgcgcag gcctccgatc ctcgtgataa caacactgac gatgatccct
     5041 tcgacgatgg cgatgaggac acaaacggca atggttttgt tgatagtaat gagacagacc
     5101 ctactcgtgc agaggattcg ggggacttcg acggagatgg gattgagaat tgggaggaga
     5161 acttgacttg caccatgtgg gatgtagcag atactgactt tggtggtgcc gcggatggtt
     5221 ttgagattct tgcaggagta aacacggatc cgtgccgttc aacattcgat tacgtgactg
     5281 tgtattcaaa ttacgatgct agttcacagg ttcttcaagt tgctaatgcc actggttttg
     5341 gtgcaggatt tttcgagtgg cgtccaactg ctccggctag aacggggttc tacaatttga
     5401 gtaatggatc tcttgttcca ttcacattca cgggtgcaga cgatgtctcg aatcccaatc
     5461 gcttggtagg agttagtgtg cctccgcctg ctacaactca gacagtgata cacaagaatg
     5521 ggtcatggtg ttgggatgcg tcaatccaac ctggtaataa cgacgcatgg tgtgatgatg
     5581 attatgctga cacggatgag gatggtttgg ccgattggga ggaatcattc ggattttggg
     5641 gctaccaatc agacccatat gatgtagatt ctgataacga tacagtaaat gatctagatg
     5701 aaatcatcaa tggcactgat ccccaagagc cttgcgataa caatcgtgac gatgatggtg
     5761 acgggctgaa caactacttt gagaataata ctgggtgcgc tcttttctac atccctggta
     5821 tgggtggaaa tggttccctc gatacctacc tgaccaatta ccagcaagca gacactgacg
     5881 taggcggcgt ctgggacggt caagaatatc tcgatggtac caatccccag aatgatccat
     5941 ctgatgattt gaatcccgcc gacacggatg gtgacggtat ccccgacgct attgagaaca
     6001 ataccggaac caactggttg gatccggata ctgatggagg aggtctaact gactaccaag
     6061 agtgccctcc tcagttctgg tccactcttt gcgcgggctc gggacaagat ccgttcgacc
     6121 ccacagacga tattattcag aatcaggtcg ctttctgggc aaacaatacg acggtcaacg
     6181 ttgatccagc tttgacacac tattggagag taaataccta tgatttctac actggtgtag
     6241 attacggggt gaactcatca ctgatagttc tcaaccctat gacgccaggt ttctcagaca
     6301 ataactggat tgcttcctct cagttccata acaattccac cacatgggag tacaccttcc
     6361 ctttcacaat caacgtgaat tccaatcttc caggtcattg gagtatgact gattattcct
     6421 cgtggtcaga tcctgctgcc ggtttgaatc atactaacta cacacatgat attcgtatta
     6481 ctgatgcgcc aatcgatttt tactttggca atgctcctga aatatggttt tccgattctg
     6541 ttcgtggaaa cagcacaggc taccaatcga gttcctatgc tacggatgtt ccagattatt
     6601 tcacagacat gactttgctt gaatccgagg tatacaacat cacgcagtcg attttgacgt
     6661 ccagtggtgc actaagcgca tacgataaga tggatgttct ggtagatttc attgagaatg
     6721 gtaatgctac attcactcct cggttgaatt acgacggtag tggataccca caaggtggag
     6781 gccctgactt cacgcacttc ctcctagtgg atagtaagga agggacctgt gacgagtggg
     6841 caacagtcct cacgagtatg gctcgactct ctggcctccc tgctcggaag gttacaggtt
     6901 tcgtcgacgg aagctggcat ggaactggat acgaggtctt cggattcaat agcgcatcct
     6961 gggttgaggt tcacatgcag acaaattcgg ctcttggtaa tgcagacatg ggctgggttc
     7021 ccttcgatgc ttgtcctcca gccgaggatg tggagatact caatgcgacc tttggcccaa
     7081 tgattgtgga ccgcaatggg accagtccac aacttttctt gaatgggacg atggtctact
     7141 ctgctaatca gaccgcggtt ccaaacctcg ttgtcgatct ctatctcgtg ccattgtcag
     7201 aggtcggagc ggttcccggc gctgcttcac aaccaagccg tctcgttggt acggccatta
     7261 cagatgtcaa cggtaatttc tctgcgaagg gaattcctcc tgagtttatt ccacctggtt
     7321 acgggggctt ggttctccag acagtgcctt caggatatgt tggttcaaat ggcctgttcg
     7381 ataactacat cgtaaatgtc accgataatg tcactttcat cgtcgaatcg cctcttccag
     7441 tcaatgaacc ggtctttggt gctggttcta acactacgat gagtggacgc gttgaattga
     7501 cctctccacc tgctggggat ttgtccctga ttgacttatg ggacatcgac ggcgatggtc
     7561 agcctgatgg ttttagtcaa gtatacttca actggacttc tacaattagt ggcccccagg
     7621 tccttacggc ttcgattggt ccaaacggtt tctttgagat cactatacca gttgacgaga
     7681 atgagtcaca aggcttggtc agcgctacgt tggagttccc agggtggcat gaagacgatc
     7741 ttaacaacgg ttcaactcca ctttatcaca ttcgtccaac gactcaggtt gtgagtatga
     7801 atatcacacc gtcgcccaat cttgatatcg ttcttgaggg gccgtcttca aacaattctc
     7861 ttctggagat taatgataac attacgatga acgggaccgt cctcagtcgt ggccttaatc
     7921 ccgttcctat ggagggcacc ctcttcctcc agatgcgtgt gaatggttcc ggcacaccct
     7981 tcgtagacat cgcgaactgg gagctcaatt ctactacttg gtcaggtaat cccggaaatt
     8041 tctcaatcac gtggttcatg gatccggctc tggttccaat cactcctgga tacatcgatg
     8101 ctcgcttcat cttcgattca gcaaccttgg aagctaacga cgaggtactc atgccacctg
     8161 gatacgggct gaagagttac attaccttcg attacttcct agatgcactt ccacgggatc
     8221 aactcggatt catctcaatc tcaatgttcg accatatggg tacctacgaa cagccgttca
     8281 atggcacgta tgagaccgaa atcgacggcg ttctcgtgaa cactacggtt gatcctgtgg
     8341 atggcggatt cggctttgag tacactcctc cactcgttcc tgccggggat tatccacttt
     8401 ggattaacta ctcaggttct caatggtact atcctgcgac caacaactcc actattcgta
     8461 tccaaggttt agccgcggta tctgcagttc taggtcagag ttggactcac atcggtggga
     8521 caaattatgt tacaggcgat attcgagatg taaatctcac aggttcccct cttgtactgg
     8581 ggaataattc ctcaatttca gccatacttg agattccagg cactggccct tcagggccga
     8641 tgggtgaacc tccggctcca gaattaatcc cgttaggtgg gacttggttg gatgtggcta
     8701 acggaaccta caatctttca ttcacggttc caacatctgt tggagcaggg gtctattcac
     8761 ttaatatcga ggctgatttc aattcagcag ctttggcagg aggggcatat ttctacacgg
     8821 aggagggcat ttcaatcgat attggagtcg agtctgaagc tgtccttgtt gccattgacc
     8881 cgccgtcgac agtcacggca ggtgacattc ttgtggtcaa tgcgagtgtc cgagatgttg
     8941 cggatggaag caacataact ggtgcagcag tccagttcat ttgggattgg gatggcccta
     9001 acaaccaatc cttgcaatct gtcaccaccg gttcccccga tggtattgcg cgtttcaatc
     9061 cggcaattcc tgcttcagcg gagcctggat actacacggt tcgaatcctc atggctgatg
     9121 atgtaactga tccactttcc acaggttctg cacgttggat tgggaaccat acggatctga
     9181 atataacggt cctagtccca actatcattt cgaatctcgt gattaccccc ccgaccttcc
     9241 ttactgccgg atccaacttc caattagtag ggcaagttga ggatgcgatt gatcctaatc
     9301 ggaatttctc aggtcgaatt gacattacca ttttctttga gggtaattcc agtgaggttt
     9361 tgatttcctc gtttacgact gccgtaaacg gtagcttcaa tcttacagtc cccacagatc
     9421 cttctggcga tggactatcc agtgggaaca aaactctagt cgttggcgtc ctagaagggt
     9481 ccaacccatt ctatctccca agtaatatca ctcagaatgt actcgttaag ggagttacag
     9541 actttacaca gacgaccccg ttgattccta tagtcgtaaa tcgtggtgat cccattgatt
     9601 ttggtgcgac acttgtcgag gctagcgata acaacagggc tcttgggaac caaacaatcg
     9661 gcgcattatt ccacgatact tcacttccaa ccgaggtcac gaatgatact ggtgttgttc
     9721 gcttcaactt cagtattcca gacacacatc cgcttggttt ggttgatatg acgctatctt
     9781 acgcaggcaa tttcactcta cttgggacga atcgaacgtt tagtactgtg actgtccgga
     9841 caataacaat cctcgtcgtc gatccgattg tagcgaatcc catcgctggt gggacattca
     9901 atgtcacagg cacactgact tcagagaacg gttcaggaat catcgatcgc aacggtaatc
     9961 ctctattgcc atcgttagtc attacaattg atggattctc ggataccttc actcctacga
    10021 atggtactgt atacgatggt aactggactg ctacgattac gcttgatcag acattccctc
    10081 gtggaactca caatctcaat gcttctttca caccgacagt gaactatttc ctcggttcga
    10141 ataatggtac cacattcgac agccgtggat acacaatact agacttcgcg gaccctcttg
    10201 atcttgatcc cgagcggcgc acagtccgtg gtaacaatgt gaccgttggc ctaagcctct
    10261 tcgataatgc cggtgatgca gttgaaaatg ccacagtcaa tatttcgatt gatagcctga
    10321 cttcattcga catcatgacg gattcgagcg gatttgcagt tggtaacttc agtgtacctt
    10381 cgacttggcc ggttggtttc atgacaatca acgcgactta tgatggactc gcagggacga
    10441 caggtgttgc aggtgatgca accttcactc gtgttgtgat tcttgcacca acagttctca
    10501 ctgttgattc agtggaaggt gatcttgtcg caggccagat gatctacatt aatggcacac
    10561 tacttgatga aaatggagcc gcgcttctga atcaaaccgg tgcccctgtc ggtggattgg
    10621 ttcatcttgc tatggatggc attgatacag ggacatctac aattgtgcaa tccgatccaa
    10681 ccactggttc atggagcata gcatacatgc tgccccttga taccacccct ggcactcaca
    10741 atgtctccac cacattcctt ggtggattcc tttgggtgga tcctatgggt gaaggtgact
    10801 cggtgaaccc agagttctat cttggttcat ttgcaagttt tgaatttgat gtatcggtac
    10861 ccactgaggt tcgcctcttt ggaggaggca cagaggttgt tcgagaagac ctcctcagtc
    10921 ttgtgggtgt tctcttcgat gtagccgaac gtccagttcc aggtcagaat ctgacagtat
    10981 ggatgaatgg tcagttcttg actaacgtta ctactgatgt agaggggtca ttctcaattc
    11041 tctaccctgt tccattggat atggctcttg gaactcagac cgtcgaggtt cgatttgcag
    11101 gtgctccact ctatctgcca tctacaagtt ctactacctt cgaggtattt gctccgacag
    11161 ttctcacagt tgatgcattg gataccgccg ctgtgggtga tgcggtaatg attacaggta
    11221 caatacgaga caaccttccc gacggttgga ttgctggaca ctttgttaca gtgcgtgtgg
    11281 ataacagtat catcggaaca gttacgactg aatctgatgg ttcttggaat ctaagttgga
    11341 ttgttggccc ggcattctct atcggagatc atcttattct cgcctacgcg gagcctcagg
    11401 gttactactt aggtggggag gcgaatacgt cgattaccat taagcataat gcgattttca
    11461 ctggcatcaa tctcgaaaat agtggttacg ctacccgtgg tgaaacttgg aatctatctg
    11521 gttcacttgt agatggggat acgagccctc agattcctat tgagggtgcg acggtgatta
    11581 tcgaggtcga tggccaacag attacaactg ctctcactga tgcaaatggt aggtttagtg
    11641 tggagatccc tgttgagttc tcatctgatc gaggtgcaca cacaattcgt gtgagctatg
    11701 agggtaatga ccagttcatc ggcgatgatg ccgaggttac tgcatacaca tgggctgaca
    11761 ttaccatcga gattcttggt gtatcggaca acaatatccg ttccaacgca tcccatccaa
    11821 tcgagattac tggtcgtgtg cttgaagtgg gcggaaccgg aaatgtcgtt tcaggagcat
    11881 ctctagtact cctatgggag ggttcgccag aaacaaccgc cgtggtatca tgggataacg
    11941 ccacaggtca gttcacgatt accatggttg gtcgagcccc tatgcaggcg gatatccagt
    12001 ttgatgttca ggttgctcag gacgatgtcc gttggttcaa ctcaggtgaa gaaattggta
    12061 ttgacgcctt cctaatgatt cctgcatctt tcgttgccga acccgtaaca gtccaattgg
    12121 actcgagaga aatcgttggt attgttcgtg tcgtggctga tgacaacggt ttgcctctat
    12181 ccaatatatc catttcagcc atcttgtcta atcaatcatc tgagttgaca cagttcggta
    12241 agctcacaga tgagttcggc atcttcgagt atgtctttgt cagtcaggaa cctctaccac
    12301 cattctcaga tcaagcacat tgggggcagt tcaacatcac gttagacagt acctccgatg
    12361 tgattgcgcc cattgaccgc ggcgatttac tcaacctgaa ggttgaccta cagtatgagc
    12421 aattagaaga ggtctcttcg ggactttcga cgactaccat tgcattccta gttattctac
    12481 taatcagtgc ctcagttgtt ggtttcaggc taaggaaccg taagaccgct attgaggaga
    12541 tgcaagacat attctcctat actgcagagt tgttagcggc tggtgattca atccgtgaag
    12601 cgatcttcaa ttgctacgag gacctctgtc tcgttctgat gcagagtgga ttcctgcgtc
    12661 gtgacttcga gacagttcgt gagttcgaag ttgccatccg gcaggctctc ccaatacgtg
    12721 agtccgctct agaggccctc gatacggtat tcgaagaagc tcgctactca tcccatgaaa
    12781 tgggggagca acacactgct actgcgcagc aggcattggc aaacgtagtc agcgagattc
    12841 agggtattga ggaagttcca ggacggtaat cgtcactatt cgaggtggat gtctagtccg
    12901 ccatcggtga atctagcgtt agcgatagag attccacttg gtagtggagt gacgatggat
    12961 tcgagaccct ctcggtcaat ccggatgaat tccgtggcat cgacatagcc agtgaatacc
    13021 ttgattccat ccactgtgac ttccttcatg tggatgtgga ttccatcatg cattggtgtt
    13081 gcatcgagag aggcccctga gagttcgctt gccaagatac gagctccggc ttcacgtgtc
    13141 atttcgacaa gttcgccagt gtggcggaca aaggcatcgg cttgaatggc tgcatcgagt
    13201 gaccctaaat cacggcggat gaaacgctga tgaagtgctg atgcatccat ttcaagccca
    13261 gcaggggtct catcttcgtt ctctgaatcc agaacgactg gagtccactc aaccttctcc
    13321 ataggactcg ctggggtcgc cgaaggtcat caacccgtcg tctcattcgg tatttcgtgc
    13381 tggttcagga tgtcgctgaa agaatcgacg aacaagcctc tctgtggctt ctggttcacc
    13441 tgtatggaac atgttgaggc ccgttgggag gcatgctttg tatcctcggt cgccaactcg
    13501 acgttcgaga acaagtacaa cagcacgatc cttcgccttt cgaatagccc tccccatcgc
    13561 ttggaggatt gcattcatcg caggttgtgc agcagagtac ttccaagcgt tccgttctcc
    13621 gaatctgtca gatatgtagt cgcgaagagc ctggtttgat gctgttggag gtgccatagg
    13681 tatgccaacg catatgactg catcgaggat gttaccttcg tagtcgacgc cctccgaaag
    13741 tcgagcattg tagacacctg cgagaagaca tctctgtcct gagtcccttg agcgacgaag
    13801 acgatcgagc acatcctgca ccctactctt tgaccaagtt ctctcttcca caattaggtg
    13861 gcgtcctggc cacgaaccgt cctcgataat ctcttccaac atgttgtagg atggaaggaa
    13921 gacggccacg tgtcctggtg tttgtcggag taaaccgtgg atgtgttcgc ggattttacg
    13981 cgtattcgct gaactacggt ccttgtaacg tgtcgttaca tctgtagcaa ggatgactgg
    14041 tctcctatcg ttttcgaagg gactagagta ctctttgtag gccactgctc gtttctctgg
    14101 catccccaag atatcgccat acatcgaggg cggaaatagg gttcctgaca tcaaaatccc
    14161 tccagcagcc tctttgagaa ggggtcttgc aacaacgcct gggtcaagga ggtgtgtagt
    14221 gattctacct tcctctccta atatgtcaaa gacagtagca agggcagagt cgccttgacg
    14281 tgtatggagg atattgagta attcccctag gcggtgacat gcgatctctg gatctgtatc
    14341 aagtgattcg tcgatttcga ccctaaccga ttctaatgtg ctgataaatc gattcatagt
    14401 catcggctca tccaatgtct cttcaagtga agcttggaat attccgagta attcttctgg
    14461 ttctgtcatt aattcactat cttctccgag tactcgtttg agatcgagga gatgcttccc
    14521 aacctcccct cgtattctca gaagtgcctt ttctgcaagc gcagcatctt cggcatctcc
    14581 agtccaagcc tctgctccac ctccctcttc caatgccttc acaacggcct cgtcctcttt
    14641 acctcggtgc tcctgcatct cactaacaca gtcgcgaagc accttcgcag tcaagcgcct
    14701 ttcgagacct cttcggattc tattcgggag gttgtgtgct tcatcaacta tcagtatcga
    14761 atttgatagt tctacaccca tcgattcaag tgatgcttct ctgaccttgt caatgaatac
    14821 gtggttgtaa tccaaaacaa tcagatcaca ttctttggca cattgcctag cacatgtcca
    14881 agagcatacc ttccgttgct tcccttgttt tattacatca tcaacatgcc taggttcctc
    14941 aaggatatac gtcttgagac cctctcttgc gtcgtgtagg atgctatcat taattccaaa
    15001 ttcacagtta catctccctg tgaatcgatc cacatcaaca cacattgaat ctctcccaat
    15061 taggtccaca agacggactt tttgtccatt aattcgagcg ttaatctttc gaacggtatc
    15121 tactacaatc cgatgttgac tttgacgccc agtcatgaat agaacggtct tctttccttg
    15181 tggatggttg gtggctctag caagtgttgc gcttagtgca gcagctgttt ttccgattcc
    15241 tgttggtgcg gcggcaaaca ggtaaccatt ttcttcgagg gtcgacaatg cgtcctctat
    15301 catctcacgt tggctatccc tcaggacatc gtgagcaacg aaggagaatg aggtcgccac
    15361 gaacaccatc ctcacgcggc ccttcaagaa gattcgctga ggagccttcc ggctgaccca
    15421 gttggggtgc cccgccgaag cggggcgtgt gtgtgggtga ttatctggtg gaaagggtcc
    15481 gcagagcgcg tattctcaat cccgaaaagt ttcctggcat gtagggggtt tggtcaaatc
    15541 catggagttc ggtggctgca tctagcgctc ggtcccgaat ctcatccatt ggttcgttgt
    15601 tgaatatgcg gcggacgggt tctgacttgg ttgccttcgc caagagtcgg ttgtgtagag
    15661 cgctgcgcag agcaacatgg gtgaagacat tggtcgcggg ggggcgctga ggcccccccg
    15721 cattggtcga gttcccatcc cctaccatgt ccatttgccc ccattaggct gtgtgatcct
    15781 cattctgacg acttttgtcg tggagattct tgaggcgctg ttccattttc gtttgcagcg
    15841 tctcgccctg atccatgact gcattcatgt gatctcgaag ggcgtaacgt gttacagtct
    15901 caggtgtgtc accattaatt tggcagaaca tatcgagttt ctctgtcaga tcgggcccta
    15961 ggtcgacttt cacagtccct cctacagctc gtgagggtcc ggattccaat aggagtcgga
    16021 ctgcgtgtcg aataacatcc gaacggttac gcattccatc gaagccaact aattgttcaa
    16081 gcatcattag gtgatcctca ggaattctga gtgaaaccat cggactcttg ctggccatgt
    16141 ctccgtgccc tccgggctca atgttatgcc ggcatcatat gaatgtattg caaatgaaat
    16201 acatttgtat tacacatgta ttctactctt cttcatcttc gcgtttcctg ttttcattcc
    16261 accatttcca actgattagt ccaattagtg ttgaacttgc atgaccaatt gaaatggctg
    16321 catctgtacc gtaactagtg taattccaaa cctcgaataa gaacacaagt atcaacggaa
    16381 attgtggttt cttagcatga tatgccagtg ctcctaatgc tccaaacatt ccaattgatc
    16441 cacctctgaa tgatctactc atgacgtaag aaaacagttc aatatctgga tataaggcga
    16501 aaccaacatt gtaaaaaatc gccataagta ttgatgttaa tgcacttgtt ccgataaaaa
    16561 ttattgcagc actcttccaa ttattatgtg cttcgaacga ttgtagaaag aacattattc
    16621 ccgctgtaac atacattgcg tgtactgtat cccaatgtgc aaagggtgaa atcaacaatg
    16681 agaataagaa aattagagga ttagtagtca attcatttgg gtccattcta gcgatttgtt
    16741 cacttattat tcttagatca tagaacagac ttccttctag agcctcatca attagcatga
    16801 cataaatcca aacgattacg agatatgcta ttgtaaatcg tcgtgttcgt aagatttctg
    16861 gtgggttaag tagccttcca gaagcatctt tccaaggcgc tacaaatcca agtaagtttt
    16921 tggaagtgtg tcgtggttta gatggggggt agatttcacc atccacatgc tatcccccat
    16981 ttttttccat ttgaaacctc tcctaagatc gaattgatgt ttcaccctga cttttcagat
    17041 tataggaacg gcagcattat cgatcccgcg ataccaaaca tcacgcatgc aatccctcta
    17101 tcgataaact tccatgcatc tggtttgtcg agaacagaag caagcctcct tgccccgtaa
    17161 ccgagggcga agaagaacag aaatgacgcg agagaagcgc caaatgcaaa cgtgaatctg
    17221 tcgtccactg agtatctact ggatgcccct ccgattagaa tgacagtgtc aagatacacg
    17281 tgaggattga ggaatgtgaa cgctagtaag gtcaaaatcg tggaggctag tccctgtgcc
    17341 ttctcatcac taatcgacat cccaactgga ttcatcgaag atcgaattct cattacgccg
    17401 tagctcgcga tgaaaagagc tgctgcgata gaaatcagga agtcggctcc ttcgatgccc
    17461 gcaaggattg atccgagtcc tagtacgcct acgataatca ggagggcatc agataaggag
    17521 cacaggaggc agacgacgaa gatatgggac ctcagcagcc cctgtctaac tacgaagata
    17581 ttctgtggcc caatcgcgag tatcaggcct atgctgaggg cgaa
//
LOCUS       DUKB01000081           10116 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_50207, whole genome shotgun sequence.
ACCESSION   DUKB01000081 DUKB01000000
VERSION     DUKB01000081.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10116)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10116)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10116
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_50207"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..649
                     /gene="panB"
                     /locus_tag="HA345_02755"
     CDS             <1..649
                     /gene="panB"
                     /locus_tag="HA345_02755"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008614808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HIH84308.1"
                     /translation="AGNETTVPMTLDHMIYHAQCVVRAVDRALIVVDMPFGTYQGNSR
                     HALESAIRIMKESGAHSVKLEGGSEIVESIQRILTAGIPVMGHLGLTPQSIYKFGTYT
                     VRAREDAEAEKLIADAKLLEAAGCFAIVLEKIPAPLAKRVSEAIEIPTIGIGAGADVD
                     GQVLVLHDMLGITMDFSPRFLRRYLNLETDIKEAVSTFVEDVRTKDFPNSDEQYE"
     gene            complement(656..4114)
                     /locus_tag="HA345_02760"
     CDS             complement(656..4114)
                     /locus_tag="HA345_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84309.1"
                     /translation="MDNLQTSLEESTEFRAYQQVDNGNGTWTVEIVDDQAGGFDDAVI
                     RSDIPAEINTTAALIPLSYDAHMESRGLFGLDLSTIGFWNNASIIEAHLELTIDSPPS
                     SEIDIFGQMTYRDWVDPSWNMATPAIPWSVSGAGGNTDSGGPMRPVSVSPSSTEISID
                     VTDGFRIAQARDIQGAGGFLGVMVTGMQVNESGYSDWSLTVHSSESSLEYLRPKWTVL
                     VEWVNPNTLSSAPAWVDIEPRASTISADSDIGMKSQVRGQDGSMSTAAIDWSVIGSGS
                     IDTSGLYVPYSVGLDFLCASWQNSQSVYSCTPMVVTPGSPVSMTLTPGNATFSVDDDI
                     QINASFLDSNGNSFTAAPQWSVSSGSIDVDGYWTLEVLGTHRVDATSGGLSSWTNVTL
                     VEGGVAELLMPQNLTVASGERVSVLPVAVDRLGNTIPLALAGDLAYSMDSGTVDNSGM
                     YTGEAIGTWVIDCTATLGATGSTTVEVTVGTPVSLEIVHPSRTVLADEAVPLPVIWTD
                     TYGNAVEQPIPLIAWTADDGGFRTTSNGTVEWLPRDLGNYTVSIAHLGLTHSIEIEVG
                     AGSIATVVIESDEEVLSAGSEVFLQMMAQDSLGNQRVLDAVWSIVGGGVSPSPFSTGA
                     TYTPSMVGTVTIQANTTENGVVYTATRLYNVVPGRLVSVSFQGDGITMTTDESLDLAP
                     IGLDAMGNPITGLQFNWTVNGIDYTDDIRGSDNVFRPTAVGDVQIQGMADGRAARIDL
                     YVVAGLPQSLEIIPPGSSFAFKGGQDILLIVEGIDQAGNRVPIDGVTWSLLDDAGTMS
                     PGDSPGEYVFTVGKVGTYSLIARRGTAAETVPMTIEPGSPDRIEVITDSDVFNEGDMW
                     DLTIRILDAGGNPVPVDPSAVSIKSEIGEGTHVQSDIWRIDIDGYGDDVPVSITFAGL
                     EKVIYVSVQPSALSKLTGTGMGQVAIGSVFVVILLAGLLVLLPRFRSELDEYEDEDED
                     EVQEDEKESQTPSLAPSTQAFGEYAGQSPSESMGRSYGRSRHRGSHGTDWGQSQMRQA
                     SANMATMGATSSWSPASNAMRGDMTSSSNAMQGTPPPRPQDLDAVSKPDAAKTSVDKQ
                     RAVQEEKAGVQNPQAAQAAAAAASSSVMLACDGTVQGQTGWYHDGRGQMSYWQVDESG
                     AWTRVR"
     gene            complement(4188..10037)
                     /locus_tag="HA345_02765"
     CDS             complement(4188..10037)
                     /locus_tag="HA345_02765"
                     /inference="COORDINATES: protein motif:HMM:NF033679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNRLRE domain-containing protein"
                     /protein_id="HIH84310.1"
                     /translation="MSSFTEDATGRTSDGTTNWTDRHLLGNGEMYGANTDGGLIVTAS
                     SSGNLELNLTRAAQLAFDAGQSHIYYTITASGPNSGWNGLEVSTVNASVATDRPYLSL
                     QFREGAEPMPNLTAVGLPNLPANDTLTWDTSGIVLDPHNRPSLEWTTPQGWNNTWDWR
                     LELNCETSSGVSITYHDSREDSGFDLNIPSYTIQSDITSDSTCEWKVQAVVNDMLGQW
                     LDWANSFGVPVDITSAVDANHEVITLQEGAAHDLLSRDILASDTRILASSPNNNYGYS
                     TDLYVDPHGSGAALVTIDLTAFPIPEPWIPSEALIDLYKLNSGSSTEVAVYIVRDSWD
                     ETSATWNNATSAATWSTFPGYYTRSMTPIDVTTINSTTGWYSWDVTEATQQARADGSD
                     ELNLMFVGTGSTVSRFASSDSVSDTERPRVRMTYASGAIWLPDDSPPSFPALNNEHTF
                     WNSTALLPTPSDSVVIKWQNTQSNVSFEIQVDSLEDYFTGAQVFNSVDNSSMFVISTS
                     TSSPSTFSFPSTSSWNDHYNAWSVRPYATTPGGDTVYGNWTSGGQFRVPTSTLGTSDG
                     SGNYSITLQRGEVFPTSNFRIPSFPDTWIDSAGGPGQTQNHGSDTSLDVGSSATAGAV
                     SVSLIEMDLGELPFQSSTLPTGVTLRLYRANYIGTGTHTVGVHDCGNNTWGESSVSWS
                     SYVPGQQCSTTASASITRVATGGATWYEWDITSIARNAFTNQDGRMTMALISNWTGTL
                     YFASSEYTSTSLRPELVFDFVDNPNGITPPPQVSLQSPLNLAVLMEEDGYLLAPQTRP
                     DLSWSPATGASGYIVRLMNSTNTLTVRSWVDSGFSSNAMTHTWTPSFDLDPDILYSWD
                     VQSIAGAIPGARSASWSFAVGDPDTESMGNNIYNADYVQGDAADLLDYPDIHDSTLDE
                     SDPTGTYGSDALRVGIGCGDSAGIQTQNECISILWVDLSQYPLPNGVNPHSGQLSIHL
                     DSIIVADTSYMDVTAYALINQNYSEISSSWASASYGNSWSSSGLVAGTDYNSTPLDTV
                     RIYNTNQNAWYDWDISEAMTSMYTSIGIVLIGVPDTTGGRIVAEFDHSEDTGADRPSF
                     DLNYTDVFDIAISGSSTTDADTPVSFSAALSDASGGALTGSVTWSTSGLGSISSTGLY
                     TPQIAGLETITARFGQVSRSLSLTVSPGAPVQLQANLSSGAINADESLAISAVVVDIF
                     GNEVDGQTVLWSVTNGTFSSTGGMTETTSTPSAQVVFLPYLTGTQTITVSWGSSSLDI
                     PVVVTVGAPHHLVVTGCETVLAGEICVYTWTVEDVRDNPMPALQAGTVSWSVDDGNIS
                     AQGDFSADRVGNWVITASSSVGVSGTFNVEVGFGAISHVILVADSNQITADEEVTFNV
                     TRVDVRGNSHPVSPPVANWTANNGTFNDDTGAAYWTPWSKGQQWIQVSVEGVTDQVVI
                     SVLDGAPVELDLRVTGGVSEITAGDILSLSAFAIDQRGNQRPVAPETWLISTPGADQG
                     WIVPSGAAANFYASTAGTFTIQAALTWTDGVQSIPLTSSEQMTVIPGDLAEVEIQGES
                     NYDVTADDSITLDVIARDAYGNVVPASALKWFIHDTSVSTLPGECGQSQDSSEITNDV
                     SAGSWAAGVEGTYALCAIQNGWQDRIDIIVTHGVAVEIWHDAEANELTAGELIDIDLW
                     ARDSAGNEFRFAESTWTTPLFVVDEDLTGSYRYQGTVADTHELAYSHNGLDESWTVTV
                     NYAALDSIDLSLSAQQAEQQATITASARGFDAFGNEVPLSNGAILIAPGHVIQATGVD
                     SWQITLVEDGTVGITVADQGKSDEKPLTSVGTLGGFFAAGGPLYYVAAGLIGLVVVAL
                     LGVVFALLRRGNDNDYDFDDDDDDDDDYQYEEDDDEDYTAGPSGPAAGPTSGPVSGPG
                     ASPEPVVEESSGDDDGVTVDDDGTEWWEDEDGTWYFRTPDMDDWEVFEE"
BASE COUNT         2717 a         2605 c         2419 g         2375 t
ORIGIN      
        1 ggcaggtaac gaaacaactg ttccaatgac tcttgaccat atgatctacc atgcccagtg
       61 tgttgttcgt gctgtagatc gcgctctgat tgttgtggac atgccattcg gcacctatca
      121 ggggaactct cgacatgcat tagaatccgc aatccgcatc atgaaagaga gtggtgcaca
      181 ttcagtcaag ttagaagggg gatctgaaat cgttgaatcg atccagagaa tactcacagc
      241 aggcatccct gtgatgggac atctcgggct cacgcctcaa tccatctaca agtttggaac
      301 ctatactgtt cgggcacgtg aagatgcaga ggctgagaaa ctaattgcag acgcaaaact
      361 tctcgaggcg gctggttgct ttgccatcgt ccttgagaag attcctgcgc ctctcgctaa
      421 gagggtaagt gaagcgattg aaattcctac aattggtatt ggggccggcg cggatgtgga
      481 tggacaagta cttgttctgc atgacatgct tggtatcaca atggacttta gtccccgatt
      541 cctgcgtcgt tatctcaatc tagagacgga catcaaagag gcggtcagca ccttcgtgga
      601 agatgtacga acgaaggact tccctaattc tgatgagcaa tatgaataac gtggctcaac
      661 ggacccgggt ccacgcaccg gattcatcaa cctgccagta actcatctgt ccacgtccat
      721 cgtgatacca gcccgtttgt ccctgcacgg taccatcgca ggctaacatg acactactcg
      781 atgcggctgc ggcggctgcc tgtgctgctt gcggattctg aacccccgcc ttttcttctt
      841 gtacggccct ctgcttatct acagaagtct ttgcagcatc tggtttcgat actgcatcaa
      901 gatcctgtgg acgtggggga ggagtgccct gcatggcgtt tgacgaggaa gtcatgtcac
      961 ctctcatcgc atttgaggct ggactccatg aggaagtagc acccatagtt gccatgtttg
     1021 cacttgcttg acgcatctga gattggcccc aatctgtgcc atgtgatcca cgatggcggc
     1081 tccgaccata tgatcgcccc atcgattccg atggtgattg accggcgtat tcaccgaaag
     1141 cttgggtaga gggagccaag gaaggagttt gagattcctt ttcatcctct tgtacctcat
     1201 cctcatcctc atcctcatac tcatcaagtt cacttcggaa ccgaggtaaa aggacaagaa
     1261 ggccagcaag caggatgacg acaaatactg aaccaatcgc aacctgtccc atgccagtcc
     1321 ctgtgagttt tgagagagca ctcggttgga cacttacata gataaccttc tcaaggccag
     1381 caaaagtaat gctgactgga acatcatcac cgtaaccatc aatgtcgatt cgccaaatat
     1441 cggactgaac atgagtaccc tcaccaatct ctgatttgat agatactgca gatggatcca
     1501 caggtacagg attgccgcct gcatcgagga ttcgaatagt cagatcccac atatctccct
     1561 cattgaaaac atcggagtct gtgatgacct cgatacgatc tggggaaccg ggttcgatag
     1621 tcatcggaac ggtttcggcc gcagtgcctc gccgtgcgat aagggaatat gtaccaacct
     1681 tgcctacagt gaacacatat tcacccggcg aatcacccgg agacatcgtt cctgcatcat
     1741 caagtaggct ccaagttact ccatcgattg gcacacgatt ccctgcctga tcaatcccct
     1801 cgacaatgag caaaatatcc tgtcctccct tgaaagcgaa tgaactacct ggtggaatga
     1861 tttccaagga ttgaggtagt ccagccacaa catagagatc gattcgggca gcacgaccgt
     1921 ccgccatgcc ttggatttgg acatcaccaa ccgccgtggg cctgaacaca ttgtcagaac
     1981 cacgaatatc atcggtgtaa tcgataccat tgacagtcca attgaactgc aaaccagtga
     2041 taggattgcc catcgcgtca agacctattg gggcgagatc aagagattcg tctgtcgtca
     2101 tcgtaatacc gtcgccttgg aaagagacag aaacgagacg ccctggaacg acattgtaga
     2161 gccgcgtagc cgtatagacc acaccattct cagtcgtatt tgcctggatt gtcacagttc
     2221 caaccatcga aggagtgtaa gtcgctcctg tcgaaaaggg agacggggaa acaccccctc
     2281 caacaataga ccaaaccgca tccaagacac gttgattacc caaggaatcc tgcgccatca
     2341 tctgtaagaa tacctcggaa ccagcggaaa gcacctcttc atcactctcg attacaaccg
     2401 tggcgatgct acctgcacca acctcaatct cgatgctgtg tgttagaccg aggtgagcga
     2461 tggatacagt gtagttacca aggtccctag gaagccactc cacggtccca ttcgatgtgg
     2521 tcctaaagcc gccgtcgtcg gcagtccatg caatcaaggg gattggttgc tccaccgcat
     2581 tgccataggt atcagtccaa atgaccggca aaggtacagc ttcgtcggcg aggactgttc
     2641 ggctaggatg aacaatttca agactcactg gagtcccaac tgtgacctcg acagtcgttg
     2701 aaccagtagc acccaacgta gcggtgcagt cgatgaccca agttcctata gcttcaccag
     2761 tatacatgcc gctgttatct actgtccctg aatccattga ataagcaagg tctccagcaa
     2821 gtgcaagggg aattgtatta cctaaacgat caacagcgac tggcaaaacg gaaactcgct
     2881 ctccagatgc cactgtgaga ttctgaggca tgagaagttc ggccacacct ccttcgacca
     2941 atgtgacgtt tgtccaggag gatagccctc cactcgtggc atcgacacga tgagttccaa
     3001 ggacctcaag ggtccagtat ccatcaacat caatcgagcc actactaacc gaccactggg
     3061 gtgcggcggt gaaggagtta ccattggaat caaggaatga agcattgatt tggatgtcat
     3121 catccacaga aaatgtagca tttccgggcg tgagtgtcat cgatacaggc gatccaggtg
     3181 taaccaccat tggagtgcaa gaataaacgg actgggaatt ctgccaagat gcacaaagga
     3241 aatccaaacc taccgaatat gggacataga ggcctgacgt atcgattgat cctgaaccta
     3301 ttactgacca gtcgatggca gcggtagaca tgctcccatc ttgacctcgc acctgtgact
     3361 tcatgccaat atctgaatct gcacttatgg tcgatgcgcg tggttctatg tctacccacg
     3421 ctggagccga tgaaagggta ttgggattca cccattcaac aagtactgtc cacttgggcc
     3481 gtagatactc aagcgaagac tctgaggagt gaacggttaa actccaatcg gagtagccgg
     3541 actcattgac ctgcattcct gtaaccatca caccaaggaa accacctgca ccctgaatgt
     3601 ccctagcctg agcgatgcgg aatccatcag tgacatcaat ggatatctct gtcgaagaag
     3661 gcgaaactga tacaggacgc atggggcctc cggaatcggt attacctcct gcccctgaaa
     3721 ctgaccaagg aatagcaggt gtagccatat tccaagatgg atcgacccag tccctgtatg
     3781 tcatttgccc gaaaatatca atctcactcg aaggtgggga atcaatggtc aattcaaggt
     3841 gtgcttcgat aatcgaagca ttgttccaaa atccaatcgt ggagaggtca agaccgaaaa
     3901 ggccacgaga ttccatatga gcatcataac tgagagggat aagggcagca gtagtgttga
     3961 tttcagctgg gatatcgctt ctaatcactg catcatcgaa accgccggcc tgatcatcta
     4021 caatctccac cgtccaggta ccatttccat tgtccacctg ttggtatgca cggaactccg
     4081 tggattcttc aagagaagtt tgcagattat ccatgggcag ggtactcagt atgaggattg
     4141 acaagaccac gattaccgtg gccctgtgtt gtgtcctcat tcctgattca ctcctcgaaa
     4201 acttcccaat catccatgtc aggtgttcgg aagtaccagg ttccatcctc gtcctcccac
     4261 cactcagttc catcatcgtc caccgtgaca ccatcatcat cgccagaaga ttcctctacc
     4321 actggctctg gagaggcacc tgggcctgag acaggaccag aagttggtcc agcagccgga
     4381 ccagatggcc cagcagtgta atcctcatca tcgtcctctt cgtattggta atcatcgtca
     4441 tcgtcatcgt catcatcgaa gtcgtaatca ttgtcgtttc cacggcgcaa gagtgcgaat
     4501 actactccga gaagcgcaac cacgacgagt ccaattaacc ccgcagcaac gtagtataga
     4561 ggcccacctg cagcaaagaa gcccccgagg gtaccaactg aagtaagcgg cttctcatcc
     4621 gacttacctt gatcggctac agtgataccc accgtgccat cctctacaag ggtaatctgc
     4681 caactatcta cgcccgtggc ttggataaca tggcctggag cgatgaggat tgcaccattg
     4741 ctgagtggca cctcattacc aaaagcatcg aagccccgtg cacttgctgt aatcgtagct
     4801 tgctgctcgg cctgctgagc actaagtgac aaatcaatgg agtccaatgc tgcatagttc
     4861 acagttacag tccatgactc atcgagtcca ttgtgactgt atgctaattc gtgagtatct
     4921 gcaacggttc cttggtaacg gtaagagcca gtaaggtctt catccacaac aaacagtgga
     4981 gtagtccatg tggattcagc gaatcggaat tcattgcctg cagaatcacg agcccacaga
     5041 tcgatgtcaa tcagttcacc ggctgtcagc tcgttggcct ctgcatcgtg ccatatctcc
     5101 acagcaacac cgtgagtaac gatgatatcg atacggtctt gccacccatt ttggatagcg
     5161 cagagggcat aggttccttc gacacctgca gcccatgacc ctgctgatac atcgttcgta
     5221 atctcgctag aatcctgaga ttgaccacac tctcccggca gagtagacac tgaagtatcg
     5281 tggatgaacc acttgagcgc agaggcaggt acaacatttc cataagcatc tctagcgatg
     5341 acatcaagcg tgatactgtc atctgctgtt acgtcatagt tactttcacc ttgaatctca
     5401 acctcagcca aatcaccagg tatgacggtc atctgttcac tcgacgtaag cggtatcgat
     5461 tggacaccat cggtccaagt caaagccgct tgaatggtga aagttcctgc cgtggacgca
     5521 tagaaattcg cggctgctcc gcttggaact atccacccct gatcggcacc tggagttgat
     5581 attagccaag tctccggcgc cactgggcgt tgatttcctc gctggtcaat tgcgaaagca
     5641 ctgagactga ggatatcgcc tgcagtaatt tccgaaactc cgccagtaac acgaaggtca
     5701 agttcgaccg gtgctccgtc aagaactgaa atcacgacct gatccgtaac gccctcaact
     5761 gatacctgaa tccattgctg ccccttagac caaggagtcc agtacgcggc tccagtatca
     5821 tcattgaatg tcccattatt ggcagtccaa ttagcaactg gaggggaaac agggtgagaa
     5881 ttaccacgga catcaactcg agtaacgttg aatgtaacct cttcatcggc agttatctgg
     5941 ttgctgtcag ccaccaaaat cacatgagaa attgctccga agcccacctc gacgttgaaa
     6001 gtgcctgaaa caccaacgct actgcttgca gtaattaccc agttccctac gcgatctgcg
     6061 gagaaatcac cttgtgcaga gatattgcca tcatcaacag accaagaaac agtacccgcc
     6121 tgaagtgctg gcatggggtt gtcacggacg tcctctacgg tccaagtata aacacaaatt
     6181 tcgccagcta gaacggtctc acagccagtg acgacgagat gatgcggcgc accaacagtg
     6241 actaccacag ggatatccaa ggaacttgaa ccccaagata cggtgatggt ctgtgttcct
     6301 gtcaaatatg gcaagaatac cacttgagca cttggcgtac tagttgtttc agtcataccg
     6361 cctgttgaac taaatgtgcc gttggtcact gaccaaagaa cggtttgccc atcaacctcg
     6421 ttaccaaata tgtcgactac cactgcagat attgctagag attcatcagc attgattgca
     6481 ccagaggaaa gattcgcttg caactgaacc ggggcaccag gtgatactgt gaggcttaga
     6541 gaacgactca cctggccaaa gcgagcagta atcgtctcaa gaccagcaat ttgtggagtg
     6601 tagaggcctg ttgaactaat gctaccaaga cctgaagttg accatgttac ggaacccgtg
     6661 agggcacctc ctgaggcatc tgagagagct gcggagaagg acacaggagt atctgcatcc
     6721 gtcgtacttg acccggatat cgcgatatca aatacatcag tgtagttaag atcgaatgac
     6781 gggcggtcag cgcccgtatc ctctgaatga tcaaattcag caacaatacg gccaccagtc
     6841 gtatctggaa cacctatgag gacaatacca atcgaagtgt acatcgaagt catcgcttca
     6901 ctaatgtccc aatcatacca tgcattctga tttgtgttgt aaattcgcac cgtatcaaga
     6961 ggtgttgaat tgtaatcagt tccagctaca agaccggaag acgaccaact gttcccataa
     7021 gatgccgaag cccatgacga ggaaatctca gaataattct ggttaatcaa cgcatatgca
     7081 gtcacgtcca tgtaggatgt atctgcgaca ataatcgaat ctagatggat actcaactgc
     7141 ccactatgcg gatttacacc atttggcaat gggtattggc tcaaatcaac ccaaagtatc
     7201 gagatacact cattctgagt ctgaatacct gcagaatcac cgcatccaat acctacgcgg
     7261 agagcgtctg aaccataggt tcctgtcgga tcggattcat ccagagtaga atcatggata
     7321 tcgggataat ccagcaaatc agccgcatcc ccttgtacat agtcggcgtt gtagatgttg
     7381 ttccccatac tttcagtgtc tggatcgcct accgcaaacg accaagatgc agaacgcgca
     7441 ccaggaatcg ctcctgcaat tgactggaca tcccaagagt acaggatatc aggatcaaga
     7501 tcaaacgatg gcgtccaagt atgagtcata gcattcgaag aaaagcccga atcaacccaa
     7561 gaacgaactg taagagtatt tgtggaattc atcagtcgga caatataccc tgatgcgccc
     7621 gtcgccggcg accaagatag atcggggcgg gtttggggtg cgagcagata tccatcctct
     7681 tccatcagca ccgcgaggtt gagcggcgac tgaagactga cttgcggcgg tggagtgatg
     7741 ccattcgggt tatccacaaa gtcgaaaacg agttcagggc gtagacttgt ggaagtatac
     7801 tctgaagatg caaagtatag cgtcccagtc cagtttgaaa tcaatgccat cgtcattcga
     7861 ccgtcctggt ttgtgaatgc atttcttgca attgatgtga tgtcccattc ataccatgtt
     7921 gcacctcctg tcgcaacacg agtaattgat gctgaagctg ttgtagagca ctgctgacct
     7981 ggaacataag aactccaact tacagaagat tcaccccatg tgttgttccc acaatcatgg
     8041 actccaacag tgtgagtccc tgtaccgata tagttggcac gataaagtcg gagagtcaca
     8101 ccagttggaa gtgtcgaact ttggaatggg agttccccga gatccatctc aatcaaagat
     8161 actgaaacag caccagcggt tgcacttgaa ccaacatcaa gagaggtgtc agaaccgtgg
     8221 ttctgcgtct gacccgggcc tccagcggaa tcaatccaag tgtcagggaa ggatggaata
     8281 cggaaattgc tagtagggaa tacttctcca cgctgcaaag tgatactata gtttccagaa
     8341 ccatcagagg tgccgagcgt actagttggc acacggaatt ggccaccaga tgtccagtta
     8401 ccgtaaacag tgtctccgcc cggagtcgta gcgtatggac gcacactcca agcgttgtag
     8461 tgatcgttcc aagacgaagt cgacgggaag ctgaaggtcg atggcgacga tgtcgaggtt
     8521 gaaattacga acatactcga attatcaact gagttaaaca cttgagctcc cgtgaagtaa
     8581 tcctctaagg aatcaacttg aatttcgaaa ctgacgttac tctgagtatt ctgccattta
     8641 atgaccacag aatccgaggg tgtagggaga agagcggttg aattccagaa ggtgtgttcg
     8701 ttattcagcg cagggaaaga tggaggagaa tcatcaggta gccagatggc accagatgcg
     8761 tatgtcatcc gaacccttgg gcgctccgta tccgatacgg agtccgaaga ggcgaaacga
     8821 gagaccgtac ttccggttcc tacgaacatc aggttcaact catcacttcc atccgcgcgt
     8881 gcctgttgag tcgcttcagt aacgtcccaa gagtaccagc cagtggttga gttgatggta
     8941 gtaacatcaa tcggagtcat tgacctagtg taatatccag ggaacgtaga ccaggtggca
     9001 gcactcgttg cattgttcca tgtcgctgac gtctcatccc acgaatcacg aacaatgtat
     9061 actgcaacct cagtagaact tccagagttt agtttgtaga gatcaatcag agcctcggat
     9121 ggaatccagg gctcggggat tgggaatgca gtcaagtcaa tcgtaactag ggccgctccc
     9181 gaaccatgag ggtcgacata taggtcagtg gaatagccgt agttgttatt tggagaagat
     9241 gcaagaattc tggtgtcaga agcgaggata tcgcggctca ataaatcgtg tgcagcgccc
     9301 tcttgtaacg taataacctc atggtttgcg tcgactgcac tagtaatgtc gactggcacg
     9361 ccaaatgaat tcgcccaatc gagccattgc cccagcatat cgttcacaac tgcttgtacc
     9421 ttccattcac aggttgaatc tgaggtaata tcagactgaa tagtataact cggtatattt
     9481 aggtcgaatc ctgaatcttc tcgtgagtca tggtaagtta tcgagacacc ggagcttgtc
     9541 tcacaattga gttcaagacg ccaatcccat gtattgttcc aaccttgtgg agttgtccat
     9601 tcaagactgg gtcgattatg tggatcaagc acaataccag aagtatccca agttaatgta
     9661 tcattagctg ggagattcgg caatccgacg gcagttaggt taggcatggg ttcagcaccc
     9721 tcacggaact gtaaggaaag gtatgggcga tccgtagcaa cagatgcgtt cacagtactt
     9781 acctcaagac cattccatcc cgaatttggc ccactagcag tgattgtgta gtagatgtgt
     9841 gattgcccag cgtcgaaggc caactgtgca gcacgagtta agttaagctc aagatttcca
     9901 ctcgagctag ccgtaacaat tagtcctccg tctgtattgg ccccatacat ctctccgtta
     9961 cccaaaagat gtcgatcagt ccagtttgtt gtgccatcgg aggtgcgacc tgtcgcatcc
    10021 tctgtgaagg aactcatgga acggtgataa acaaaaacat cactcccgtg tccggaaatt
    10081 acgtttagat gaagttgtgc acccacgact cggata
//
LOCUS       DUKB01000082            3259 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_168976, whole genome shotgun sequence.
ACCESSION   DUKB01000082 DUKB01000000
VERSION     DUKB01000082.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_168976"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1620)
                     /locus_tag="HA345_02770"
     CDS             complement(<1..1620)
                     /locus_tag="HA345_02770"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012493.1,HMM:NF016724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH84311.1"
                     /translation="MGGDDGDVRNLNIDSRLIDYLIEKGIENLHPPQIEAIAPALSGR
                     NLLLATPTASGKSLVAYLAILNRLRTAGEGARAFYIVPLKALASEKVDDLRELCSKVD
                     MTVGLAVGDREGETGSIDDADIVVCTSEKLDSLLRNRPAFAEKVEIVVADEFHLIDEP
                     SRGPTLEVLLARLRHLRPEAQRIALSATVGNPKELAAWMEADLVESDWRPVTLQYGTL
                     TGLELDIHRAVGPNEDIELPESRTLKGSASKITDAILEDTISIDGQILLFVSTRASAE
                     KEARELGKRRLKTLNRLATNESKEEISKLEILATSLTRGDDAASLTDRLATAIHGGVA
                     FHHAGLTSRQRSQIETAFKDGLLKALCATPTLAAGVNLPARRVIIRDWKRWNGGRYAD
                     LSVMEIQQMQGRAGRPQYDDSGEAWVMAKTESDRDKIIDAYIFGFPEDIQSKLANPLA
                     DTVEDDPALLTHVLASIASVGLTDRDALRAFFEQTLLARQIDKHNLHQRIDRMIEWLV
                     QRDMILRTGESDLVTERIASRPINEEVEENWE"
     gene            1713..2381
                     /locus_tag="HA345_02775"
     CDS             1713..2381
                     /locus_tag="HA345_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84312.1"
                     /translation="MDGGNDAIQTLSLLEEEPDVNDWVEILWGCFLIAIGLHRLFHPG
                     DLLDESAMRWIAGGVVGLGIAWIGHGLKDMMVKENRRATAALLSGAPPAETVDYKLIR
                     DVLLHPTEYRSFLQFAYEQAFSDGVLSGDELEELSQLASALEIGDPEISRIATVAAIN
                     SALADGVVSEAERILIHNAVEPLGLNEDDLAKIDSALEDGIIDDEEREMLVSMINRLT
                     AEEE"
     gene            complement(2387..>3259)
                     /locus_tag="HA345_02780"
     CDS             complement(2387..>3259)
                     /locus_tag="HA345_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84313.1"
                     /translation="FSLPPARWIFLRPAAFSWSKNIGLPVALIFILISASVAPTLLAT
                     SNLPDSEERLIDDLIDKRLDAIVTSIESGDPDFSNGFFATQPGERFRLRLHVDGIHPT
                     GDGRYQIQTEELKDIDIDRAIFDAMRTSGLNEGEQVLFVLQAGRLLSLDLLMLEASLV
                     VKELPIGDVIHIDWTMIKSAGQGSVNDRAWMTRPATVDSNDWARFTTRLIPEMISISY
                     CDCGLDAVDVSIRTNLLHTAEITPDIEGIRGASDPTPMTLTFITLGYGTLLVLLAVTW
                     YSEKVARKVAENYV"
BASE COUNT          762 a          780 c          812 g          905 t
ORIGIN      
        1 ttcccaattt tcttcaactt cttcgtttat cggccgggat gcgattcgtt ctgtaacaag
       61 atcggattca cctgtacgca atatcatatc tcgttgcaca agccattcaa tcatccgatc
      121 gattctctga tgaagattgt gtttgtctat ctggcgggcg agtagagttt gctcaaagaa
      181 agcacgtagg gcatccctat ccgttagccc tactgacgca atggaggcaa gaacgtgagt
      241 tagtagtgcg ggatcatcct ctacagtgtc agctaacgga ttcgcaagtt ttgattgaat
      301 atcttcaggg aaaccgaaga tgtaggcatc gataatcttg tctcggtctg attcggtctt
      361 tgccatgacc caagcttctc ctgaatcgtc gtattgcggt cgcccagccc tcccttgcat
      421 ctgttgaatt tccataacgg aaaggtcagc gtatctacct ccgttccatc gcttccaatc
      481 tcggattatt actcgtcgtg caggtagatt aactcctgcg gcgagagttg gtgtggcgca
      541 cagtgccttc aacaaaccat ctttgaatgc agtttcaatc tgagagcgct gtcttgaagt
      601 caatcctgcg tgatgaaaag cgacacctcc atggattgcg gtggcaagtc gatcagttag
      661 gctggcggcg tcgtcaccac gagtcaatga tgtggctaat atttcgagtt tggatatttc
      721 ctctttcgat tcgtttgttg ctaaccgatt tagtgttttt aggcgccgtt ttcctagttc
      781 tcgtgcttct ttttctgctg aggcccgagt tgagacgaag agtagtattt gcccatctat
      841 tgagatggta tcctctagga tagcatcagt gattttactg gctgaaccct tgagggttcg
      901 tgattcaggg agttcaatgt cttcgttggg accaacagct ctgtgaatat ctagttccaa
      961 acccgtcaat gtcccatact ggagtgttac aggtctccaa tctgattcta caagatctgc
     1021 ttccatccat gcggcaagtt cctttggatt cccgacggtc gctgagaggg caattctctg
     1081 tgcctccggt cgaagatgcc tcaggcgggc aagaagaacc tccaatgttg gacctctcga
     1141 tggttcatcg attagatgga attcatcggc aacgacaatc tcgactttct cagcgaatgc
     1201 gggccgattt cgtagaagtg agtcaagctt ctcagatgtg cagaccacaa tatctgcatc
     1261 atctatgctt cctgtttccc cttctcgatc acctactgcc aatcctactg tcatgtcaac
     1321 cttagagcat aattcacgaa ggtcgtcgac tttctctgag gccagtgcct tgagggggac
     1381 gatgtagaat gcacgtgcgc cttcaccagc ggttctcaaa cggtttagga ttgccagata
     1441 ggccacgaga gacttcccgc tagctgtagg tgtggctagc aataagttcc tgccagagag
     1501 ggcaggtgca atagcttcga tttggggtgg atgtaaattc tcgatacctt tctcaatgag
     1561 gtaatcgatg agacgggaat cgatgttgag attgcggaca tcgccatcat ccccgcccat
     1621 gcgaatgcat tccgcgccat cgtcctaaag catgacgaga gatatgggct tcagccgcat
     1681 tcgctaagtg cttcatctct ccatcctatg gcatggacgg cggtaacgat gcgattcaga
     1741 cactatccct cctcgaggag gagcctgatg tcaacgactg ggttgagatt ctctgggggt
     1801 gcttccttat cgcaatcggt ctccaccgtc tcttccatcc aggagacctt ctcgatgaga
     1861 gtgctatgcg ctggattgca ggtggtgttg taggattagg gattgcttgg attgggcacg
     1921 gcctgaaaga catgatggtg aaggagaatc gaagggcaac tgctgcacta ctcagtgggg
     1981 cccctcctgc agagacagtt gattacaagc ttattcgaga tgttcttctt catccaacag
     2041 agtaccgttc tttcctacag tttgcctacg agcaggcttt cagtgatggc gttctcagtg
     2101 gtgacgaact tgaggaactg agccaactcg catcggcctt ggaaatcggt gatcccgaga
     2161 tttctcgtat cgctacagtt gccgccatta attctgcttt agcggatggt gtggtttcgg
     2221 aagccgagcg tattctaatc cacaacgcgg tagagcctct tggtctcaac gaggatgatc
     2281 tcgcaaagat tgactctgct ctagaggatg gtataatcga tgatgaagag cgtgaaatgc
     2341 ttgtctcgat gatcaatcgc cttacagctg aagaggaata acccctttag acataattct
     2401 ctgcaacttt gcgtgccact ttctcgctgt accatgtcac tgctaacaat acaagtagag
     2461 taccgtatcc caatgtgatg aatgtgagag tcatcggagt tggatcagat gcacctctta
     2521 ttccctcgat atctggcgtt atctccgcag tatgcagtag gtttgttcgg attgaaacgt
     2581 cgacagcgtc taggccacag tcgcagtagg agatgctaat catctcggga atgagtcgtg
     2641 ttgtgaaccg ggcccaatcg tttgaatcaa ctgttgcagg gcgagtcatc catgctcgat
     2701 cattcactga cccttgaccc gcagatttaa tcatggtcca atcgatgtgt attacatcgc
     2761 caatcggcaa ttccttgact acaagtgatg cttcaagcat caataaatcg aggctgagga
     2821 gtcgtcctgc ttgaaggacg aacagtactt gttctccttc gtttaatcca ctggtcctca
     2881 tagcatcgaa gattgctcga tcgatgtcga tatccttcag ttcctcggtt tggatttggt
     2941 atctcccgtc tcctgtggga tggataccat ctacatgcag cctcaaccgg aagcgttctc
     3001 ctggctgggt tgcaaaaaac ccgttcgaga aatcaggatc tccactctca attgatgtga
     3061 cgattgcatc caatcgtttg tcaatcaggt catcgattaa cctctcttca gaatcaggaa
     3121 gattagaggt ggcgagaagt gttggagcga cggatgcaga gattaagatg aatatcagtg
     3181 caacaggcag gccgatgttc ttcgaccaag agaaagcagc tgggcgaagg aaaatccacc
     3241 ttgcaggtgg taaagagaa
//
LOCUS       DUKB01000083           11906 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_11709, whole genome shotgun sequence.
ACCESSION   DUKB01000083 DUKB01000000
VERSION     DUKB01000083.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11906)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11906)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11906
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_11709"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..565
                     /locus_tag="HA345_02785"
     CDS             <1..565
                     /locus_tag="HA345_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84314.1"
                     /translation="ALDDIYIDADQRDAGQSVDLASTIEALERMAKRLEALSGEEGGF
                     HGPIWRFQRSGMLPFETGRLVGVQRPEIDDRALQEMDPERKEEDSNLETKEGDVRSTW
                     EPLPEPSETHGVSISNRSDLGLVPTSAILGSKEVQDFHETERQLREVDSMSEHRQSIR
                     NGVPMPADPTQRDALSSLEDDLADLDI"
     gene            577..831
                     /locus_tag="HA345_02790"
     CDS             577..831
                     /locus_tag="HA345_02790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84315.1"
                     /translation="MSDVDQLPTLLAREEDIAPARYRRPFDILSLLLGLIIVATVGWY
                     GWTEGGIGPMSPELVAGLACFPGVLIGLMISEILSRFFDR"
     gene            complement(811..2052)
                     /locus_tag="HA345_02795"
     CDS             complement(811..2052)
                     /locus_tag="HA345_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84316.1"
                     /translation="MADEVNLQGEGQTSLHLRSLRRKWQVIALQITATISLVWMYIMV
                     TRTYGSCDPIDATWCPAVDHTITLGVLDQYLVSIDKSLPLPDWMIGMGNEGDGRYWMP
                     LLIIGVIVAGWTFLGYQSMKIRRRVNLGILSVALLYLAGLFLITWLFGMIGSFSLYLP
                     FGQDEMNRNHVEYLIGPLLLYIELFLLLIYFLPVFTGLMGVWRLSKQQITWSVGSTIV
                     YLGIHSLLSYEGVRSSVEVNLQALPVQIGEATEWGGLIAPEIVPLLTIGLLMMIFLES
                     GSATIRYMQYAFKLPESCKKDPEYVRQFDNILSSHLKHTAGMTFFVGLVTALALKFDD
                     LIVDLMSVFEGTQWSGQVEESLELQLTYGTVISALIFVIFVAGMRYIIPWPRISGLIE
                     KGLNQVNGTVRATNSSTVEEP"
     gene            complement(2057..3328)
                     /locus_tag="HA345_02800"
     CDS             complement(2057..3328)
                     /locus_tag="HA345_02800"
                     /inference="COORDINATES: protein motif:HMM:NF013998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HIH84317.1"
                     /translation="MGAALNMWTRKASILGASGVSLVLIGMMMSNFQMMVFGVAFVSF
                     IAVASWITGHGDIEVVRTLSADNLYKGDDLYVDLEITNSSWRRTQQLEIYDNIPHEMK
                     LRSGLNYMRVNLGPGETTRIRYVLRCPLRGHYSLGPISIRYRDSFNLFSQEMYVDHRS
                     DLIVFPQVREIEEAMVRSRTPKMYTGATTLRTPGPGTEFFSLREYVPGDPFKIINWKA
                     FARTGTLIVNEKCRDAVTDVFILLDSRDISRIGTVLKNPLEVGTVAAASLASYFIKRR
                     DSVALAVYDDRLSFLPPDTGDKQYFKILSSLAGVAPKGAMPLQAVTNALSSRFSRGSP
                     VFIISAAEGDGTTIPAVRDLAGRGHEVIILSPSSVDFERLVSRIPRTSYEVLKLERQN
                     RLTALAGFGARVIDWMPDVELSQALLQVKMG"
     gene            complement(3313..4968)
                     /locus_tag="HA345_02805"
     CDS             complement(3313..4968)
                     /locus_tag="HA345_02805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4350 domain-containing protein"
                     /protein_id="HIH84318.1"
                     /translation="MVIGLATFSAAAATDWLRSANGRRSIAIVLFYLTLGTLLMTVAG
                     TYIERSEVHQSAYGTDWNDMSSFREDIKAQNLTTTSIVSSPLLLEEIQSPSDTVFVIS
                     GVERDTISLPSFSGDSSVINLVEGLGYSNSEIEAIRTFVERGGTLIMLDDFGYSQGLA
                     EDFGLGFSGHQLYDTQTWDPSLDYNFVWSNITNGFNYTSTSGPKTETNPCTADGDFDG
                     VPDFLDVESSNPSVGFERLPTSTDLGLCAHRWDSVTQQYDTDPGYDLLLNQPSAFDKD
                     LSGDEDQNLYAIGYSSQDAYLDTNDDGQLTVGFSGSEVGADEQGPFATYIKYCRSRNC
                     DNADAGRAFFVTDGSLLINALYDTVGVAEGAYGDLNKTVPDNDNRRWVLDALAEALMS
                     GDGEISAEAQVIFDESRHQQPSFMGDTYNLLYYILIYFTNDWMAMLVMFLGLFVMFEF
                     IIIKKMDPEPWRHVFSIIYYGYGDAARYEYYANPKKIKQILLTRVRNVNSLSREEFDA
                     LPARELQKMVDDPVLVKFIFEDRRYSMEEIIAVIKRIKTWGRR"
     gene            complement(5039..5281)
                     /locus_tag="HA345_02810"
     CDS             complement(5039..5281)
                     /locus_tag="HA345_02810"
                     /inference="COORDINATES: protein motif:HMM:NF017088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRC-barrel domain containing protein"
                     /protein_id="HIH84319.1"
                     /translation="MPATFTRELLAREVRDRSGDVLGHVADLIVDSRTGSVTYILVKI
                     AQELDPAQLPWPSEGGMIPLPIDEVREIGAIVQLHR"
     gene            complement(5291..7513)
                     /locus_tag="HA345_02815"
     CDS             complement(5291..7513)
                     /locus_tag="HA345_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008086490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HIH84320.1"
                     /translation="MAGADESVTLRVAKAIPSDVGHGRARVPFNNDLDLKPGDIIEIS
                     GENKTAAVVWRCRPEDANLGVIRIDGIIRKNAGVSLGDRVDISKVEVKKCERLVLSPV
                     MAKQQKVRFGPGIEGFARRGLNKRPVVAGDRIFIPGMTLFAEALPFAIVSTRPKGIVQ
                     VAPETEIVIKEEILDEEEDAAGHQIAYEDIGGLGNQLQKVREMIELPLKHPILFRRLG
                     IDPPKGVLLHGPPGTGKTMIAKAVASETQAHFTSINGPEIISKYYGESEKQLREIFDE
                     ATQNAPAIIFIDELDSIAPKREDVTGEVERRVVAQLLTLMDGMHGRENVIVIGATNRR
                     DAIDQALRRPGRFDRELEIGVPDKEGRREIVDIHTRGMPISDDFEIEWVLENTYGFVG
                     ADINALVREAAMKALRRYLPEIDLDEEEIAPEVLEKMEVQMNDFKEAIKDIEPSALRE
                     IYVEIPEVSWDQVGGLHEIKDRLKESIEWPLTQPELFEHFGVKPPRGVILFGAPGTGK
                     TLLAKAIANEAKANFISIKGPEMISKWVGESERGIREVFKKAKQASPSIIFLDEFESI
                     AGARVENRGEGSDVMNRVVNQLLASMDGVEALDGVIVIAATNRPEMIDPALLRSGRFE
                     RVLHVPPPDEESIREILKIHTDGMPIGKFSLDDMAKPLAGYTGADVEAICREAALIAM
                     RAKRKTITRKHFEEAIDRVRPTVTPQMMEYYEKLQSMLTSGLDSIRRNNDGLRGIESV
                     "
     gene            7667..9268
                     /locus_tag="HA345_02820"
     CDS             7667..9268
                     /locus_tag="HA345_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013178702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HIH84321.1"
                     /translation="METSSQNPNGSPKIRGYNIIGGQLKLASDGSTFVSTNPAWLEDE
                     LGEFPLSTKEDVRDALAAARTAFPPWAATPAPTRGQIIGNMGRLLMDHKDEIVRLQSR
                     EIGKTLKESAGEVQEAIDTCLFFQSEGRRLYGQTVNSELPDKELFTYRRPLGVCGIIN
                     ACNFPSAVPFWKMIPAIMCGNTCVWKSPQDAPLLSFALARIMHESGIPDGVINLVHGK
                     GSGAGQHLVDAVDDGLVNKISFTGSTGVGKMIGEICGRNLVSCSLELGGKNPLVIMPS
                     ANLENAVTGAYWAGFGTAGQRCTSLGNLIVHESIYDKFLEMYMNKVRTTKIGDSMRHE
                     DVLYGSMLSEKYAKDFLKGLDMCDASGAKRIHGEGRITEASAPENFLGSANEGVYMWP
                     HVYVDVTEDMECFHEEMFGPAVTIVKARDFDHALHLANASPYGLSSAIYTNDRLEAYR
                     YKTGIKAGMTGINNSTTGAEAHLPFGGVKGSGNGSRESGIWVIESYSYWHAVNDELSG
                     KLQLAQMDVDEIEMSEAEVDYTSLA"
     gene            9351..10163
                     /locus_tag="HA345_02825"
     CDS             9351..10163
                     /locus_tag="HA345_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84322.1"
                     /translation="MGDGLKLPMLNGMGRTDRIDNWWAQPVVMAIGLTAAMLWTLWRV
                     VFFSEHIDYYVDGAHVISPMFSPNVLDWDMFSGWDHPSWVNAAVLILWIPFSFRGTCY
                     YMRRVYYRTFFASPVGCWVDEPNVNKMIGYKGEKRVFVLNNLHRYFLYMVIPILLIKW
                     WDITHSMSFSNGGYGISGGTIILTLESICLTMYVTSCHALRHLAGGVLDRWVSGISKI
                     RGAMFSKISIINRDHGFWFWISLILVFVGDAWTILCSKGIVNDFSLILIGGA"
     gene            10165..>11906
                     /locus_tag="HA345_02830"
     CDS             10165..>11906
                     /locus_tag="HA345_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007518999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HIH84323.1"
                     /translation="MSENYTTHEYDVVVIGAGGAGLRAAIEASRSGAKTAIITKSLLG
                     KAHTVMAEGGCAAALQNADPRDGWKVHFHDTMKGSKWLANWRMAEYHAKEAPDRVREL
                     EQWGAVFDRTDKNVINQRNFGGHTFPRLAHVGDATGLELIRTLQERGIHEGIDMFTEY
                     TVRHLLKEGDRVTGCVAYTRVDGDFHAFSAKSVILATGGITRCWSVCSGSWEYTGDGH
                     ALALWAGAELRDMEFVQFHPTGMVWPSSVRGILVTEGVRGEGGRLFNSEQDRFMFNYV
                     PEMFKGDHAETIEESDKWVEEVVSGKLATVRRPPELLTRDVVSKAINSEVKAGRGSPH
                     GGAFLDISHRGEKAILAKLPSMHHQFKELAGVDISKEPMEVGPTAHYVMGGVIVDAES
                     QETTIPGLYACGEVASGLHGANRLGGNSLSDLIVFGKRAGEHASKRSANLAQPSIDDS
                     QVQSAIKEMVAPLERGEGENPGLIYDEMRDMMQEKVGIIRIKDELEEALEDLKEFSKR
                     EKSCFPGASRRYNSGWHQALDLKNMVDISVVATLAALTREESRGGHTRDDFQGHDDEY
                     WGKTLNICWMEKGE"
BASE COUNT         3253 a         2901 c         2812 g         2940 t
ORIGIN      
        1 agccctcgat gacatctaca tcgatgcaga ccagagagac gcggggcaat ccgtagatct
       61 tgcctcgact attgaagcgc tggagaggat ggcgaagcgt ctcgaggcac tctcaggtga
      121 ggaagggggg ttccatggac caatatggcg cttccaaaga tccggtatgt tacctttcga
      181 gaccggtcga ctagttgggg tgcaacgccc tgagattgat gaccgggccc ttcaggaaat
      241 ggatccagaa cggaaagaag aagacagcaa tctagaaaca aaagaggggg acgttcgctc
      301 tacttgggaa cccttgcctg aaccttcaga gacacatggc gtcagcatct caaacagatc
      361 cgacctaggc cttgttccaa cctcagcaat tcttggatca aaggaagttc aagacttcca
      421 tgagactgaa cggcaactcc gtgaagtcga ttctatgtct gagcaccgac aatctatccg
      481 gaacggtgta cccatgcctg cggacccaac ccaacgtgat gccttatcat cacttgagga
      541 cgatctagca gatctcgaca tctgagagga taccctatgt cggacgtaga tcaactccca
      601 actctccttg cacgagagga agatatcgct ccagctaggt atcgccgacc cttcgatatc
      661 ctctcacttc ttcttggcct aatcatcgta gcaacggtag gatggtacgg ttggaccgag
      721 ggaggcattg gccccatgag tcccgagttg gtagccggac ttgcctgctt cccaggagtg
      781 cttatcggac taatgatctc agaaatcctt tcacggttct tcgaccgttg aactgtttgt
      841 agccctcact gttccattga cctgattcaa tcccttctca attaggccgc tgatacgagg
      901 ccatggaatg atgtaacgca tccctgcaac aaagattacg aaaattagtg ctgaaattac
      961 agtcccatag gtaagttgaa gctcgagtga ctcctcaact tggccactcc actgagtccc
     1021 ttcaaagaca gacatgaggt caacaatcaa gtcatcaaac ttcagggcaa gggcagtaac
     1081 aagacccaca aagaaggtca ttccggctgt atgcttgaga tgtgaactca gaatattgtc
     1141 gaattgccgg acgtattctg gatctttctt gcaagattca gggagtttga atgcatactg
     1201 catgtacctt attgttgcag aacctgattc caagaagatc atcatcagta gaccaatagt
     1261 caacaacggg acaatttctg gcgcaattag gcccccccat tccgtagcct caccaatctg
     1321 tactggaaga gcctgaagat tgacctcaac agaagaccga acaccctcat aggaaagcag
     1381 tgaatgaata ccaagataga cgatagtgga acctaccgac catgtaatct gctgcttaga
     1441 caaacgccat acacccatca atccagtgaa tacaggaagg aagtaaatca gtagaaggaa
     1501 gagttcaatg tagagcagta acggcccaat gagatactcc acatgattcc gattcatttc
     1561 gtcttgacca aagggcaagt ataggctaaa tgagccaatc attccgaaga gccatgtaat
     1621 gaggaaaaga cctgcaagat acagtaatgc aaccgataga atacccagat taacacggcg
     1681 acggatcttc atcgactgat agccaaggaa ggtccatccg gcaacaatta caccgataat
     1741 caagagtggc atccaatatc tgccatcgcc ctcgttaccc ataccaatca tccaatcggg
     1801 aagaggcaat gacttgtcga tcgaaacaag atattgatcg agaacgccga gagtaatcgt
     1861 gtgatccaca gcgggacacc aagtcgcatc gattggatca catgacccat aggtacgtgt
     1921 caccattatg tacatccaaa cgagagagat cgtcgcagta atctggaggg cgattacctg
     1981 ccacttccgg cgaagagaac gcaaatgcag actggtctgc ccttcgccct gtaagttcac
     2041 ttcgtctgcc attctatcac cccatcttga cctgtaacag agcttgagac agctccacgt
     2101 ccggcatcca atcaatcaca cgtgctccga atccagcaag agcagtcaaa cgattctggc
     2161 gctcaagctt gagaacctca taggacgttc gaggaattcg gctaacgagc cgttcaaaat
     2221 cgacactgct cggactgagg ataatgacct cgtggccacg tccagcaagg tcgcgcaccg
     2281 ctggaattgt cgttccatca ccctcagccg cactaatgat gaagactgga gaacctcgac
     2341 tgaagcgaga tgaaagcgcg tttgtcacag cttgcagggg cattgcaccc tttggagcaa
     2401 ctccagcaag gctactcagg attttgaaat actgcttatc accagtgtct ggtggtagga
     2461 atgaaaggcg atcatcgtat actgcaagag ccacgctatc acgacgttta atgaaatacg
     2521 atgcaagaga tgctgctgca actgtgccca cctcaagtgg attcttgagc actgtaccaa
     2581 tacggctgat atcacggctg tcaagcaaaa tgaagacgtc tgttactgcg tccctacact
     2641 tctcattgac aatcaatgta cctgttcggg caaatgcctt ccaattgatg atcttaaacg
     2701 gatcacctgg aacatactca cgcaggctga agaactcagt tccaggacca ggtgtcctga
     2761 gagttgttgc accggtatac atcttaggag ttcgactacg aaccatcgcc tcctcaattt
     2821 cacgtacctg tgggaagaca ataagatccg accggtggtc aacatacatt tcttgtgaaa
     2881 atagattgaa cgaatcacgg tagcgaatcg aaattgggcc aagggagtag tgcccccgta
     2941 gagggcaacg aagtacgtaa cgaatacgag tagtttcacc cggtccaaga ttgacacgca
     3001 tgtaattgag tccacttcgt agtttcattt catgtgggat attatcgtag atttcgagtt
     3061 gttgagtcct gcgccaagaa gaattggtaa tctcaagatc gacgtatagg tcgtcgccct
     3121 tgtacaggtt atcggcactg agagtacgaa caacctcaat atcaccatga cctgtaatcc
     3181 atgaggctac agcgataaaa gaaacaaatg caacaccaaa taccatcatt tggaagttag
     3241 acatcatcat cccgatgaga actagtgata ctccagatgc accaagaatc gaagcctttc
     3301 gagtccacat attcagcgcc gcccccatgt cttgattcgc ttaatcaccg cgatgatttc
     3361 ttccatcgaa tatcggcgat cttcgaagat gaatttaacg agcacaggat catccaccat
     3421 cttctgtaac tcacgtgcag gcaaggcatc gaattcctca cgactcaatg aattgacgtt
     3481 tctcactctg gttagtagga tttgcttgat cttctttgga ttcgcgtagt actcatatct
     3541 cgctgcatct ccataaccgt agtagatgat actgaagacg tgcctccacg gctctgggtc
     3601 catcttcttg atgataatga actcaaacat gacaaatagt ccaaggaaca ttaccagcat
     3661 cgccatccaa tcattagtga agtaaatcag gatatagtag agaagattgt aggtatctcc
     3721 catgaaactt ggttgctgat gtcgactttc atcaaaaatc acttgtgctt ctgcagatat
     3781 ctcaccatcc cctgacatga gtgcttcagc aagtgcgtcc aaaacccatc gtcgattgtc
     3841 attatcaggt accgtcttgt tcaggtcccc ataagcaccc tccgctacgc ccacagtatc
     3901 gtaaagcgca ttgattagaa ggctaccatc tgtcacgaag aaggcacgac cagcatcagc
     3961 attgtcacaa ttccttgacc tgcagtattt gatgtatgta gcgaatgggc cctgctcatc
     4021 tgcaccaact tctgagccac tgaatccaac agtaagctgg ccatcatcat tggtgtcaag
     4081 atatgcatct tgagaggagt agccgatcgc atagagattc tgatcttcgt ctccagagag
     4141 atccttatcg aatgcgctag gttggttgag aagaagatcg taaccagggt ctgtatcata
     4201 ttgctgagtt acagaatccc atcggtgcgc acagaggcca agatccgtcg aggtcggcag
     4261 acgttcgaat ccaacactag gattactaga ttcaacatcg aggaaatcag ggactccgtc
     4321 aaaatctcca tcagcagtac aaggattcgt ttccgtctta ggacccgaag tgctggtgta
     4381 attgaatccg ttcgtaatat tcgaccaaac gaaattgtag tctaaactag ggtcccaagt
     4441 ctgtgtatca tacaattggt gaccgctgaa cccgaggcca aagtcctcag ctaggccttg
     4501 tgaatatcca aaatcgtcta gcatgattag agtcccacca cgctcaacaa aggtcctaat
     4561 ggcttcaatc tcagagtttg aataaccgag tccttcaact aaattaatca cagatgaatc
     4621 cccactgaaa cttggtaacg agattgtatc gcgttccacg cctgagatta caaacaccgt
     4681 atcgctaggc gattgaatct cctctagaag aagagggcta ctgactatgc tggtggttgt
     4741 gagattctgt gccttgatat cttcacggaa cgaactcatg tcattccaat ccgttccgta
     4801 agcactctgg tgtacttctg atcgttcgat gtaagtgccc gctaccgtca ttagaagggt
     4861 cccaagtgtg aggtaaaaca ggactatcgc aatcgaacga cgtccgttcg ctgaacgcaa
     4921 ccaatcagtc gcagcagcag cgctaaatgt agccaatccg atcaccatcc aacaagtgga
     4981 gcaagattca gacgctcatg cgagccttaa gacggttgtg cggtcccgcg catacagatt
     5041 aacgatgcag ttgaacgatt gccccgattt ctcggacctc gtcgataggg agaggtatca
     5101 tccctccctc ggaaggccaa ggcagttggg cagggtcaag ttcctgcgct atcttcacta
     5161 aaatataggt tacagatccg gtgcgtgaat caacaataag atcggcaaca tggccgagaa
     5221 catctccgct cctgtcccga acctccctcg cgagaagttc ccgcgtgaag gttgcaggca
     5281 tcgaatcacc tcacaccgat tcaatcccac gaagaccgtc attattacga cgaatggaat
     5341 caagtccact ggtaagcatc gattgaagct tttcgtaata ctccatcatc tgaggtgtca
     5401 cagtaggacg aactcgatcg atagcctcct cgaagtgctt acgagtaatt gtcttcctct
     5461 ttgccctcat ggcgataagc gcggcttcac gacaaattgc ctcgacatct gccccggtat
     5521 atccagccaa cggcttcgcc atatcatcca gagagaactt tccaattggc atgccatcag
     5581 tatgaatctt caaaatttca cggatagatt cctcatctgg cggagggacg tgcaggaccc
     5641 gttcgaaacg tccggaccgg agaagtgctg ggtcaatcat ttcaggacgg tttgttgctg
     5701 caatgacaat gacaccatct agggcttcga caccatccat tgaagctagg agttggttga
     5761 caacacgatt catcacgtcg ctaccttctc ccctattctc aacacgagca cctgcgattg
     5821 attcgaattc atcgaggaaa atgatgctag gtgaggcttg cttagccttc ttgaacacct
     5881 cacgaatacc tcgttcggat tcccccaccc atttcgaaat catctctgga cccttgatag
     5941 agatgaaatt ggccttcgct tcattcgcaa ttgcctttgc aaggagggtc tttccagtac
     6001 ccggtgcacc aaagaggatt acacctctag gaggtttcac accgaaatgc tcgaacaact
     6061 ctggctgagt caatggccat tcaatgctct ccttaagccg atctttaatc tcatgaagac
     6121 cgcctacctg gtcccatgat acttctggaa tctcgacata aatctctctc agcgcactag
     6181 gttcgatatc ctttatcgcc tccttgaaat cgttcatctg aacctccatc ttctcaagaa
     6241 cctcaggtgc aatctcttcc tcatctaggt cgatttccgg aagatagcgc cgaagagcct
     6301 tcatggcggc ctctcgaacg agggcattga tgtctgcgcc aacgaaaccg taagtattct
     6361 cgaggaccca ttctatctca aaatcgtcac taattggcat accacgtgtg tggatgtcaa
     6421 caatctcgcg tcggccttcc ttatctggca cgccgatttc aagttcacga tcgaatcgac
     6481 cggggcgtcg tagggcctga tcaatcgcat cacgacgatt cgttgcgccg attacgatga
     6541 cattttcacg tccatgcata ccatccatca atgtcagtag ttgcgcgaca acacgacgct
     6601 ctacctcccc tgtgacgtct tctcgcttag gagcaatgct atccaattcg tcaatgaaaa
     6661 taatcgcagg agcattttga gtagcctcat cgaaaatctc tctaagttgc ttctccgatt
     6721 caccataata cttcgagata atctcaggac cgttaatcga agtgaaatgg gcttgtgtct
     6781 cagaagcaac cgccttggca atcatcgtct ttcctgttcc aggcggacca tgaaggagca
     6841 cacctttggg tggatctata cccagcctgc gaaacagaat cggatgcttg agtgggagtt
     6901 caatcatctc tcggactttc tggagttgat tgcccaagcc gccgatatct tcgtacgcga
     6961 tttgatggcc tgcagcatcc tcctcctcgt ctagtatctc ctctttgatt acaatctccg
     7021 tctctggcgc gacttgtacg atacccttgg gtcgagtgct tacgattgcg aaggggaggg
     7081 cctcagcaaa tagagtcata ccagggatga aaatccgatc cccggctaca actggtctct
     7141 tgttcaaacc tcggcgagca aatccttcga tacctggtcc aaagcggacc ttctgctgct
     7201 tagccataac tggagaaagg acgaggcgtt cacacttctt gacctcgacc ttgctgatat
     7261 cgacacggtc gccaaggcta acccctgcgt tctttcggat gatgccatct attcggatga
     7321 caccaagatt agcatcctct ggccgacatc gccatacaac tgcagccgtc ttgttctcgc
     7381 cagatatctc gatgatatca cctggcttca gatcaagatc attgttgaag gggacacggg
     7441 ctcggccatg tccaacatca ctgggaattg ctttcgcaac acgaagagtc actgattcat
     7501 ctgctcctgc catcctcgca cctcgggtga taggaactgt tcgtcggggg ctattaaacc
     7561 caaaccgaaa cccacactct acgtcgtcaa gagccgttcg tcacattgat gagacgaggt
     7621 tcgatggccc ctcatggtac acatccttga aactggcttt gaatccatgg aaacgtcttc
     7681 acagaatccg aatggatctc caaaaatccg aggatacaac atcattggag ggcaactgaa
     7741 gttagcatcg gacggaagta ccttcgtttc cacaaacccg gcttggcttg aggatgaatt
     7801 aggagaattt ccgctatcta ctaaggaaga tgtgagggat gccttggctg cagctcgcac
     7861 tgcattccca ccatgggcag caacacctgc acccacccgt ggccaaataa tcggcaatat
     7921 gggccgcctc ctaatggatc acaaagatga gattgttcgc ctccagagtc gtgagattgg
     7981 aaagaccctg aaggagagtg ctggagaggt ccaggaagcg attgatactt gcctattttt
     8041 ccagtccgag ggaagacgcc tatacggcca gacagtcaac agtgaactcc ctgataagga
     8101 actcttcacc tatcgccgac cactgggcgt gtgtggcatc attaatgctt gtaacttccc
     8161 ttcagcagtt cctttctgga aaatgattcc agccatcatg tgtggaaata cttgtgtctg
     8221 gaaatcgcct caagatgcgc ctcttctttc attcgcactt gcacgaatta tgcacgaatc
     8281 tggaatccct gatggtgtaa tcaatctcgt gcacgggaaa ggtagcggtg ctggacagca
     8341 cctagtggat gctgtggatg atgggcttgt caacaaaatc tcgttcaccg ggtcgacagg
     8401 tgttggtaag atgattggag aaatttgtgg acgaaacctc gtttcctgct ctttggaact
     8461 tggcggaaag aatccacttg tcatcatgcc ttctgcaaat ctcgaaaacg cagttactgg
     8521 tgcctactgg gcaggatttg gaacagcggg gcaacgttgc acaagccttg gtaacctgat
     8581 tgtccacgag agtatctacg acaaattcct tgagatgtac atgaacaagg ttcgaacaac
     8641 aaaaatcggt gactcaatgc gtcatgagga tgtgttgtat ggatccatgt tatccgaaaa
     8701 atacgccaag gacttcctaa agggtctcga tatgtgcgat gcgtccggtg caaagcgcat
     8761 tcatggagaa gggcggatta ccgaagctag cgctccagaa aatttccttg gatctgccaa
     8821 cgagggagtc tacatgtggc ctcatgtcta tgttgatgtc acagaagata tggaatgctt
     8881 ccatgaggag atgtttggcc cagcggttac catcgttaag gcaagagatt tcgatcatgc
     8941 actccatctg gctaacgcaa gtccatacgg attatcctct gcaatttaca ccaatgacag
     9001 actcgaagca taccgctaca aaactggaat taaagccgga atgaccggaa taaacaactc
     9061 gactactgga gccgaggctc accttccatt cggtggtgtc aagggaagcg gtaacggtag
     9121 tagagaatct ggaatatggg ttatagagtc ctattcatat tggcatgccg taaacgacga
     9181 actttcaggt aaactgcaac tagcacaaat ggatgttgat gagatcgaga tgagtgaagc
     9241 agaagttgac tacacttcat tggcttgagc aacagccgaa caggtcaaag acccccccct
     9301 gactggatgg tgatatgcgc cccctatagg gggcgtggtg gttgtaatca atgggcgatg
     9361 gactcaaact ccctatgctt aatggcatgg gccgtacaga tagaatcgac aactggtggg
     9421 ctcagcccgt ggtgatggct attggcttaa ctgcggcaat gctgtggaca ttatggcgtg
     9481 ttgtattttt ctcagaacat atcgattact atgtcgatgg agcccatgtg atctcaccta
     9541 tgttttcacc aaatgttctt gactgggata tgttttctgg atgggaccac ccctcctggg
     9601 taaatgcagc tgttctaatc ttatggattc cattctcatt tagagggaca tgctattaca
     9661 tgcgccgagt ttactatcgc accttttttg ccagccctgt tggatgctgg gtcgatgagc
     9721 ctaatgtcaa taaaatgata ggttacaaag gtgaaaagcg agtttttgta cttaacaatc
     9781 ttcaccgata cttcctatac atggtaattc caattctttt aatcaaatgg tgggatatta
     9841 cgcactcaat gtcattctca aatggcggtt atggtatttc tggagggact atcatcctaa
     9901 ctcttgaatc gatatgcctg acgatgtatg tcacatcatg ccatgcacta agacacctag
     9961 caggaggcgt gctagaccgc tgggtaagtg gtatctcgaa gattcgggga gccatgttct
    10021 ctaaaatcag tataatcaat cgcgaccatg gtttctggtt ttggatctca ttgatccttg
    10081 ttttcgtcgg agacgcatgg actattttat gctcaaaagg tatagtcaat gatttcagtt
    10141 taattctaat tggaggtgct tgaaatgagt gaaaattata caacccacga atacgacgtt
    10201 gttgttattg gtgctggagg tgctggccta cgagccgcta tcgaagcttc aagaagcggc
    10261 gcaaagactg ctatcatcac gaaatctctt cttgggaaag cacacacagt aatggctgaa
    10321 ggtggatgtg ctgctgcatt acagaacgca gacccaagag atggttggaa agttcacttc
    10381 catgacacta tgaaaggaag taaatggctt gctaactggc gcatggctga atatcatgct
    10441 aaagaagcac cagatcgagt gcgtgaactc gaacaatggg gtgctgtatt cgatagaacc
    10501 gataaaaatg taatcaatca gagaaacttt ggtggacata cattcccaag actagcccac
    10561 gttggagatg ctaccggact agaattgatt cgaacactac aggaaagggg aatccacgaa
    10621 ggtattgata tgtttactga atataccgtc cgtcatcttc tcaaagaagg agatagagtt
    10681 actggctgtg tagcatatac ccgtgtcgat ggcgatttcc atgctttctc tgctaaatcc
    10741 gtaattctgg cgactggcgg catcacaaga tgttggtctg tttgttctgg gtcttgggaa
    10801 tatactggag atgggcacgc tcttgctcta tgggctggag cagaattaag agatatggaa
    10861 ttcgttcaat tccatcctac tgggatggtt tggccatctt cagtccgagg tatcttagtt
    10921 actgaaggag ttagaggaga gggtggtcga ttgttcaaca gtgagcaaga tagattcatg
    10981 ttcaattatg tgcctgaaat gttcaaaggc gatcatgctg aaaccatcga ggaatccgac
    11041 aaatgggttg aagaggtagt ttcaggaaaa ctcgctactg ttagaaggcc tccagaactc
    11101 ctcaccagag acgtggtttc caaggcgatt aacagtgaag tgaaagccgg aagagggagc
    11161 ccgcacggag gggctttcct cgatatatct caccgcggtg aaaaagcaat tttagccaaa
    11221 ctaccatcga tgcatcatca attcaaggaa ctggctggtg tggacatctc caaagaacca
    11281 atggaagttg gccccacagc acattacgta atgggtggag tgatagttga tgctgaaagt
    11341 caagaaacta cgattccagg actgtatgcg tgtggagaag tggccagtgg attacacggc
    11401 gcaaaccgac tcggcggtaa ttcgctatcg gatctaatcg tatttggcaa gagagcagga
    11461 gagcatgctt ctaagcgatc tgcgaattta gcacaaccaa gtatcgatga ttctcaagtt
    11521 caaagtgcga ttaaggaaat ggttgcaccg ttagagagag gagaagggga gaaccccggt
    11581 ctgatttatg atgaaatgcg cgacatgatg caagaaaaag ttggaatcat tcgcattaaa
    11641 gatgaattgg aggaagcact ggaagacctc aaagaattct ctaagcgtga gaagagttgt
    11701 ttccccggtg caagtcgtag atataattcg ggatggcatc aagccctcga cctcaagaac
    11761 atggttgaca tatcggtagt agcaactcta gcagcactaa ctcgtgaaga gagccgcgga
    11821 ggccacacgc gtgatgattt ccagggccat gatgatgaat actggggcaa gactctcaat
    11881 atctgttgga tggagaaagg cgaaat
//
LOCUS       DUKB01000084           15570 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_31212, whole genome shotgun sequence.
ACCESSION   DUKB01000084 DUKB01000000
VERSION     DUKB01000084.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 15570)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 15570)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15570
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_31212"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..801
                     /locus_tag="HA345_02835"
     CDS             <1..801
                     /locus_tag="HA345_02835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84324.1"
                     /translation="TLFIARVLGIPLGGTPSFGSVDVLSDTHPLISWTMIWATLEIVL
                     IGMALLWDWIEGRRREAGLEDHRSAGGRVVWTFGIALLSVGPAGLIASILGLRRGIQW
                     TQSAVLMGTVLSIAISIFALSSSIPILQENLGAILLVMGSTSFVATLFTIQEPRRIWT
                     SAHLIDAHILLVLGILISPLPNIAFLSTLLILSTLTWLTGILQLRKMLRFWGATDLVF
                     AGLMAILTMGSELLEPTNAFIALIVLAIELGLVVWLAQSRQAAMMAQE"
     gene            860..1834
                     /locus_tag="HA345_02840"
     CDS             860..1834
                     /locus_tag="HA345_02840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HIH84325.1"
                     /translation="MTGPWIADASEEEEHPTVPIGINEMTIPRVALVMSVVTLVGILL
                     MGGVIGFSFVSFLNSMDESLAAGNDDVLMEDGRWVWEVHFLFDTCTPRDDAWVMPEVL
                     SDQDDEYLYPGEVECEWMHQGEGDRAVVVIHNRGPNTVDLMLTSDHESIVFGESDDTS
                     LLVPSIGENSSYFAMLDLKEDLDETTFTINASHVTVMDAVVGMDINLMRGSNTEPVHT
                     DPGDRVQVHYTVWDADTGEELDDGDLPATAGPDAMCETGAPWICYIDGFPWSILGLDI
                     GQDRGVLGPGTTHTTLLPPPIAYGGSEGHQLENSWLRFELELSLLAAI"
     gene            1878..3182
                     /locus_tag="HA345_02845"
     CDS             1878..3182
                     /locus_tag="HA345_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84326.1"
                     /translation="MSEGHQAVNCDGRAQSWATRRLKPSSPRRGEPEVHMNDQMRRLS
                     TPWSIAVERSIRISNSEFLPGVLLDPACGSGIHLAAMCLETGRVGLGIELDEEAGKFA
                     AANMNRLLEKGDGPGRVSNRILIGDGVDAEGALKTYHDSLEDSGISSTPPVSLLHIDP
                     ARPLDAQNHTLDEMAPPIGDLLKSWVPRMNQDERGPALLLDLSPRLSRKQRGEIDAIL
                     NEVAPGAARTWEWLSQGGGRIDRLSVWVGPLASESSHRAIRMGPKTPLRTVEAGSTSP
                     FISEKRGMPPSFDQWIVIVDPAVVEARLHDAWLTSFDAPEYNPIWQRASLRRPILVSD
                     TPPPDSLLDDPFTVAVGRVCGHRLSPPGMENAPTVARAAERSGIGHLVLRCEVDPELH
                     PKIQKRLNKALKGVEGERGFIVDVPVSRGDNWHVVHVTCIES"
     gene            3290..3754
                     /locus_tag="HA345_02850"
     CDS             3290..3754
                     /locus_tag="HA345_02850"
                     /inference="COORDINATES: protein motif:HMM:NF003140.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HIH84327.1"
                     /translation="MSTENDFGEDFLYILRIADADIDGVRPIGMGLTNVKGIGRRTAR
                     RLCQLAEIDPSKLGGHLDDAEQDRLRNTIDTYPSLVPGWLVNRERDLETNEDAHLFSL
                     EVKLTRDDDIARLAEMKAYRGLRHRSGHKVRGQRLRSNGRSGLTLGVERKKV"
     gene            3767..4459
                     /locus_tag="HA345_02855"
     CDS             3767..4459
                     /locus_tag="HA345_02855"
                     /inference="COORDINATES: protein motif:HMM:NF003139.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HIH84328.1"
                     /translation="MGQPKFSRPKTQTPTHPWKAERIEEEHALKEQYGLKRIGGMKEI
                     WRAKSALRRHRQLAMKLIGRVDTTEGHFMREKGDFLSSMHRKGLIPEEAGLDDVLQIN
                     VENMLDRRLQSQVYYKGFAPSMRAARNIIVHGHIVLGNQRMNVPGYHVLRQQEAEIAY
                     HPTSKFNNPDHSMRQEMERRRQTVGGDVEEDPEAIPATREWTETDVDQIKQDAAEADS
                     EADAVVEEGGDE"
     gene            4459..4839
                     /gene="rpsK"
                     /locus_tag="HA345_02860"
     CDS             4459..4839
                     /gene="rpsK"
                     /locus_tag="HA345_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HIH84329.1"
                     /translation="MGHKAIVHIFSSHNNILLTATDLTGAETICKVSGGIVVGKGSAK
                     SGQFSSTRAAEQIAEMLTEKEFDQLIVKYRGAGGNRSPSAPGATSAIRALTRAGMTIT
                     RIEDVTPIPTDGTKKKGGRRGRRV"
     gene            4852..5736
                     /locus_tag="HA345_02865"
     CDS             4852..5736
                     /locus_tag="HA345_02865"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF001988.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HIH84330.1"
                     /translation="MDCEIIEEEDNRIRILLKDTDHAAVNALRRTMIADTPKMAIHQV
                     RFTQSTEVTDDQIWETIGSIPDEVIAHRLAMTPIPSDTQDFSFEDECVNCKDMVESQR
                     GCPMCNIVYTCNVKGTPEGRAVKASDLEVFGDLSLSIPEEFGDITITKLYKGQMISLT
                     AKAKKGYGRDHVKWQPVCGITFQSRQHAVLSDKKAAKSLWGLGLTVTEKDFGKNGRIE
                     DIQMVDKVRADLHHVGPSTDLGRDFGNAITLEDIDGEYILSYETDGSMKARTVFELAT
                     ASLGERFASLSGDLDIVL"
     gene            5752..6741
                     /locus_tag="HA345_02870"
     CDS             5752..6741
                     /locus_tag="HA345_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84331.1"
                     /translation="MAVVTTTARLGGHITLAFTVHSDSEELHEQGSMGIGLCIEAGLS
                     TSCRSDPSRSSGLMVISNGLPIDSDLHRLVLEECARFDPSLYSMHHTFDLACELPFSQ
                     GFGLSAAGSITAARCLIAHSDIPLHLHEPLVWAIAHRVERRHSGGLGDVTALHAGGVV
                     RRITPGATHQIDQIEPVIVGTGPGRSDGWGSSIPLLLAWRPSGSKHTSTYIDSEGWSQ
                     RIRIAGEIAMETMSSNPWDMTRWPEIIDAAHCFAKQSGLIEDSGRASLLDEVRWALKP
                     IEKDIEVMLCMLGESVVVVPRELDSGNRMDEAENLLVNLTSLKCAQTVLSSIS"
     gene            complement(6736..7716)
                     /locus_tag="HA345_02875"
     CDS             complement(6736..7716)
                     /locus_tag="HA345_02875"
                     /inference="COORDINATES: protein motif:HMM:NF026161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPD domain-containing protein"
                     /protein_id="HIH84332.1"
                     /translation="MNETGEGSVWGKDEQTCLRAIQRFETKNRAMGIPENIDPKPETI
                     EIEWPISPVPLNVQKAVGKLIVKRGEFGFLEEERVDEIAKIIEDYPIGLEQALSLRAA
                     INQEKSVYSHRRIMDRKKDLRRRYDNRTGILELAELVDGPPVNVFRAILTARKHSKNQ
                     IKIMLKEPSRMNERDQEQFRIAEEADRVANVDQSETHLAADLFEDILCDHFESLGVRF
                     RRQGELSKEQILLEGRPVRTPDLLFLDDLRINGIPCAWIDAKHFFGSALSFPRKKTQK
                     QVNRYTEAYGQGAIIYRHGFCDGLHLRGAQKLDAMPVDLSRLIEHNESRS"
     gene            complement(7764..10619)
                     /locus_tag="HA345_02880"
     CDS             complement(7764..10619)
                     /locus_tag="HA345_02880"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: protein motif:HMM:NF001568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HIH84333.1"
                     /translation="MVEYEPNTIEPKWQLAWKEAESFDSDVDQSKPKFYCLEMFPYPS
                     GHMHMGHVRNYSIGDSIARYRRLRGFNVLYPMGYDSFGMPAENAARSKGGHPHDVTWG
                     NIESIREDLQRMGFSYDWRRELATSNAEYYRWNQWIFLKFYETGLVERRTAPVNWCND
                     CETVLANEQVKNNRCWRCSSEVVQKEMAQWFLRMTAYADELLDGLDDIGFPEHVKAMQ
                     RNWIGRSHGAEIHFPVVDSDHTIAAFTTRPDTIFGVTFVTLSPEHPLCEEIVAGTEQE
                     AEFQALADECAKLTEFERINMLREKKGVFLGRMARNPLSGEEIPIYAGNFVVASYGTG
                     AVMAVPAHDQRDHDFAEKYDIQIRRVLSESEGSEPITEGKAFEGLGWMIGSSREGFDG
                     LYGDDAKQAVIRALEAEGAGKGSTQFRLKDWLLSRQRFWGTPIPFVHCTKCGVIPVPK
                     EDLPVRLPLDVVFSEEDSGNPLGSHTEFVQTICPTCGGEARRETDTMDTFYDSSWYFL
                     RFCDAMNENAPYDRETIDYWMEGGVDLYIGGIEHAIMHLLYARFFTKALRDFGMNKVS
                     EPFSRLVCQGMVNAPTPYCTSCNVEHHVDLTGNDCPQCGELLGSRSAKMSKSLGNTVS
                     PEIMIEQFGADTVRLFILFGSNPEAGMDWSDSAVEANHRQMHQIFSVLNLLDEVSDEV
                     GPMDDWLAAKRRSNMHTWWEAMDDVRIREGVMISHFDMLTDLQWAMRRGGVGSKELKK
                     HLTVWGAMLYPATPHMAEEWNFHLGNDTTLAETIINDPSIGDDDVLILSEESALKELI
                     DSARNVKGLAERHSEKPVTRLVIQTTPNWKLDLLIEALDLADTEFDFMREGTAFIQQH
                     STFVDEAMRGEVMQYWRALTIGSKKTRGRVFTLRDTEKTLIRSKHNEAASIKSAALFI
                     AEAINIEDIEVYVAGEGEDVSGKARFAAPLQPGLAFL"
     gene            complement(10702..13317)
                     /locus_tag="HA345_02885"
     CDS             complement(10702..13317)
                     /locus_tag="HA345_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84334.1"
                     /translation="MSQRQRGILLVLALLLSSIGAASAEGGNGPYTSIEGLEPMNGIH
                     FIAGEAVEFKIQAVNSDSISHSIEYNPTCPYTFQIVDSVGVVVYDLETERLCPVQKRG
                     ETLDTGEILEAGTVRYDFTSNGNDLTTGTYEILAQFGEEVEVARQILEIQQKTSLPND
                     IRMEAIILPFTSGDVSESSDRLVISAIIHNDGTDSVSIQGYDDCDILWSLDGGTPMES
                     GIGCGEDVIINAGDSHHLGWIEHSLNDAVISGLRSASVWIIGNDPAAQIFNWVHTVSE
                     STLSDVEISIESHSLSDSMAPTASDIDVRVVAKNVGPEKIILEYSASCAAPISVLDER
                     GLWMHDQSEAANCDAPLTTLNLLPGDETILWADEVSTVDTNGCGWIGSNMVMQANLPQ
                     IGQSSIRGFELLDGNAAQECRASNQPTDNIVFSVDEYEVVDDLVRFDLSITNNGELPV
                     DFIWTSDCAIRSESSLDGDEQSPRSSALSCGLDDSMIRLTEGDTFIFEGLSHTLSNDV
                     SGQHTILFTLQSVPEIQTSLTFTIEDTEEAVEENVEVVDEEEIMADEEETILSVEIIE
                     GTWSRVRTDNGGCWILISPVGEERALEMSNDASFAAVDGEQGVYRTIEAPLRTQSHCA
                     AWGPGFVIEEVLDQWIPADDSTSTSMESEDSESTPFIQQIAAPATTVVVTTSLLSIVL
                     LFVANTEWIRIGLLNGGLTLIGMVRRRDYDGDFQRGRVVGYLVANPGVHFRALLAALD
                     MSNGQLAHHLKVLEETEMIWRRRDGRMMRYYPSTIDSKLDENDLPVPLLSPDPNSLQG
                     RILDLLDATGNDIVNLSQKELAVRLESSQQLISHHLKTLEAYGLIERDRVGMRFRYRL
                     TREALFLLESADPDV"
     gene            13412..14140
                     /locus_tag="HA345_02890"
     CDS             13412..14140
                     /locus_tag="HA345_02890"
                     /inference="COORDINATES: protein motif:HMM:NF012955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84335.1"
                     /translation="MMQPGEFDRRTHDDGIEVWVTQMGPFMNMNTAFIDRKNGIVAII
                     DPFDSNRWVEALDEEGLKPTHLLYTHTHRDHTAGFQKMIRNDFGHDLEVWAHSEAVDP
                     VWLRFDVFRPVHATHLWEHVTRTDVEWSAGSIQLTITHTPGHAPGHVTIHGHGVYHAG
                     DLLFTSACGRDDLPGGDPLTLWRSIAHAKNQLIGMPRDWRLIPGHRYDWIDGTTPDWV
                     SIGECLQHNYALNSPTLDAINSME"
     gene            complement(14141..>15570)
                     /locus_tag="HA345_02895"
     CDS             complement(14141..>15570)
                     /locus_tag="HA345_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84336.1"
                     /translation="AGTSIWAAVYNTTSQEMEDLEHFGCPDRDGDTYADVFDAFPDDS
                     TQWADRDGDGCGENSNGNSPDLFIDDSVQCTDSDGDGYGDVPSGTNGDWFPNDSTQWH
                     DTDSDGFGDNQDGTEPDICPLEYGTMTEEEVRGCPDSDNDGTADIEDPFPDDGFAWSD
                     GDGDGYPDQIGPNMDDCPTLAGNSSMGGMLGCTDTDGDGYSDGIDPFPDDPLQWEDDD
                     LDGHGDNYGYTNITVTVNSSHGGQSVDVVNRVQYGDAFPDDSTQWSDMDGDGYGDNST
                     GYEPDAFPLLPSQNEDLDRDGYGDNGTKDAFEPDDCKSQPGTSYIDRVGCLDSDSDGV
                     SDQGDSCPFDPDASEFGATCAIIDPALNEGTEGQESTSFMTILLGGGLFLVIFLLAAI
                     LMAMISRQAAKRRYSAEQRRLQVQENAFAEEDERRSAWADYYAKQGDFEKAKELGWVE
                     MPEWQRHQEQEAAQALASIPSLDDL"
BASE COUNT         3724 a         3844 c         3838 g         4164 t
ORIGIN      
        1 acccttttca ttgcacgagt cctcggtata cctcttggtg gaactccctc ttttggtagc
       61 gtagacgtat tgtctgatac tcatccgtta atcagttgga cgatgatatg ggcgaccctc
      121 gaaatcgtgc ttattggtat ggctctgctt tgggattgga ttgaaggcag acgtcgtgaa
      181 gcgggtcttg aagaccatcg aagcgccggt ggaagggttg tttggacttt tggaatcgcc
      241 ttactctctg taggtcctgc aggactgatt gcctcaatcc ttggactccg tcgaggaatt
      301 cagtggactc aatctgcagt tctgatgggt actgtgctta gtatcgccat ctccatcttc
      361 gctttatcct cctcgattcc cattcttcag gagaaccttg gggctattct actggtaatg
      421 ggttctacat catttgtcgc gacgttgttc actattcagg agcctcgtcg aatttggact
      481 tcagctcacc tcattgatgc acatattctg ttggttcttg gaatccttat ctcgccattg
      541 cctaacatcg ctttcctctc aactttactc atactttcga cgcttacctg gttaacgggg
      601 atcctccaat tacgcaagat gttacggttt tggggagcta ccgatctcgt gtttgctggc
      661 ctcatggcta ttctcactat gggatccgaa ctactcgaac caacgaacgc tttcatcgct
      721 ctgattgttc tcgcaattga actcggatta gtggtctggc tcgctcaaag tcgccaggca
      781 gcgatgatgg cccaagagta gcctccgtga ttcccattct gtggataggt tgattcgcgg
      841 tagaaggaag ccaaactcga tgacaggccc atggattgcc gatgcttctg aggaggagga
      901 gcatccgacg gtgcctattg gcatcaatga gatgacgata ccacgtgtcg cactcgtgat
      961 gtctgtcgtg acattggtgg gcattcttct catgggcggt gtcattggtt tctccttcgt
     1021 atcattcctc aacagtatgg atgaatcatt ggctgctggc aacgatgatg ttctcatgga
     1081 agatggccgt tgggtctggg aggtccattt cttgttcgat acttgtacgc ctcgagatga
     1141 tgcatgggtt atgccagaag tgttgtccga tcaagacgac gagtacctat atccggggga
     1201 ggttgaatgt gaatggatgc atcagggtga aggtgatcgt gcagttgttg tgattcataa
     1261 tcgtggacct aacaccgttg atctcatgtt gacttcagat cacgagtcca tcgtctttgg
     1321 agagagtgat gacacaagtc tattggttcc gagtatcggt gaaaattcat cttactttgc
     1381 tatgcttgat ttgaaggaag atctcgatga gaccaccttc acaatcaatg catctcatgt
     1441 gactgtgatg gacgcggttg tgggcatgga tatcaatttg atgcgtggat caaatacaga
     1501 accagtccac accgatccag gcgaccgtgt tcaagttcac tatacggtat gggacgctga
     1561 tactggagaa gaactagacg acggcgatct ccctgcaact gccggccccg atgcaatgtg
     1621 cgagactgga gcgccttgga tctgttacat cgatggattt ccttggtcaa tccttggttt
     1681 ggatattgga caggatcgag gtgtacttgg gcctgggaca acacatacca ctctattgcc
     1741 tcctccaatt gcttatggtg gaagtgaagg gcaccaactt gagaactcat ggcttaggtt
     1801 tgaattggaa ttatcccttc ttgcagctat ctgaatcgac ccgaaatgcc cataccgtgg
     1861 taccctgaat caaagccatg agcgaagggc accaggcggt caattgcgat ggccgcgctc
     1921 aatcttgggc cacgcggcgt ttgaagccca gttcaccgcg tagaggcgag ccagaagttc
     1981 acatgaatga tcagatgcgg cgcctttcga ccccttggtc tattgccgtt gagcgttcaa
     2041 tacgcatttc aaattcagaa tttctaccag gtgtcctact cgatccagct tgtggttcgg
     2101 gtattcatct agctgcaatg tgtcttgaga cggggcgcgt cggactcggg attgaattag
     2161 atgaggaagc gggaaagttt gctgctgcga atatgaaccg cctcttggag aaaggtgacg
     2221 ggcctggacg cgtctctaat cgtattctaa tcggggatgg agtggatgca gaaggtgccc
     2281 tcaaaactta tcacgactca ttggaagatt ctggcatttc ttccacccct ccggtttctt
     2341 tgcttcatat cgatccagcc cgtcctttag atgcacagaa tcacacctta gatgagatgg
     2401 ctccacccat cggagacctc ctcaaatcat gggttccacg tatgaatcag gatgagcgtg
     2461 gccccgctct tttactcgat ctttctcctc gcctttcaag gaaacaacgg ggagagattg
     2521 atgcgattct caatgaagtg gctccggggg cagcgaggac ttgggagtgg ctttcccaag
     2581 gtggaggacg gatcgatcgc ctctccgtct gggttgggcc tttagcaagc gaatcatccc
     2641 atagagcaat tcggatgggg cccaaaacgc cccttcgaac tgttgaagct gggagcacat
     2701 ccccctttat ttctgagaag cgtggtatgc ctccatcttt cgaccaatgg attgtaatcg
     2761 tagatcccgc tgttgttgag gcgcgtctcc atgatgcatg gctcacctct ttcgatgcac
     2821 ctgagtataa tccaatttgg caacgtgcat ctctccgccg tcctatcctt gttagcgata
     2881 cacctcctcc ggattcactt cttgacgacc ccttcacggt cgctgtggga agagtatgcg
     2941 gtcatcgact gagtcctcca ggcatggaga atgcgcccac agtcgcgaga gcagcagaga
     3001 ggtcaggtat tggacaccta gttcttcgtt gcgaggttga tccagaactc catccgaaga
     3061 ttcagaaaag gttgaacaag gccctgaagg gcgttgaggg ggagcgcggg ttcatcgttg
     3121 acgtgccagt gagtcgaggt gacaattggc acgtagtcca tgtcacgtgt atcgaatcct
     3181 gaggctctaa atcagtggtc tgcatcgttc cattcatata tggggggcaa gtcggtgggc
     3241 tgcccgtaag ggccatcggg tgaccgatga acacggggga accgtagaaa tgagtaccga
     3301 gaacgacttc ggagaagatt tcctgtacat cctgcggatt gcagacgctg acattgacgg
     3361 tgtgcgaccg attgggatgg gattgacgaa tgtaaagggc attggccgcc gtactgcgcg
     3421 ccgtctctgt caacttgcag agattgatcc cagcaaatta ggtggccatc tagatgatgc
     3481 cgaacaagat cgtctccgta atacgattga tacttaccct tctcttgttc ctggctggct
     3541 tgttaacaga gagcgagatt tagagaccaa tgaagacgca cacctatttt ctcttgaagt
     3601 taaactaaca cgggacgatg acatcgcccg tctcgccgag atgaaggcgt accgtggtct
     3661 tcgccaccga agcggtcaca aggttcgcgg gcaacgccta cgaagcaatg gccgcagtgg
     3721 tttgacactc ggtgttgaga ggaagaaggt ttgaggaggg gattgaatgg gccaaccaaa
     3781 gttttcacgt cctaagacac agactcctac tcacccctgg aaggctgagc gaatcgaaga
     3841 agagcacgct ctcaaggaac agtatggcct caagcgtatt ggtggaatga aggagatttg
     3901 gcgtgctaag agtgcacttc gtcgccatcg ccaacttgct atgaagctca ttggtcgagt
     3961 tgatactaca gaaggtcact tcatgcgtga aaagggagat ttcctttcct caatgcaccg
     4021 taaaggcctc attccagagg aagcaggatt agatgacgtt ctacagatta acgtcgagaa
     4081 tatgcttgat cgccgcctcc agtcccaagt ttactacaag ggattcgcac cctctatgcg
     4141 cgctgcacga aatatcattg tccatggtca cattgttctg ggcaaccaga ggatgaacgt
     4201 gccaggctac catgtcctac gtcagcagga ggcagaaatc gcttaccacc ccacttcgaa
     4261 gttcaacaat ccagaccatt caatgcgtca ggagatggaa cgtcgaagac agactgttgg
     4321 tggtgacgtc gaagaagatc cagaagcaat cccagccaca cgcgaatgga ctgagaccga
     4381 tgtcgatcag atcaagcagg atgctgcaga agccgattca gaagccgatg cagtagtaga
     4441 ggaaggaggc gatgaatgat gggtcacaag gcaatagttc acatcttcag ttctcacaac
     4501 aatatcttgc ttacagctac tgatttgacc ggtgctgaga caatctgcaa ggtttctggc
     4561 ggcattgttg ttggcaaggg ctccgctaag agcggacagt tctcctcaac tcgcgctgct
     4621 gaacaaattg ctgaaatgct cactgagaag gagtttgatc aactcattgt gaagtaccgt
     4681 ggtgctggtg gaaaccgttc accttctgca cccggcgcaa cttcggcaat tcgcgctcta
     4741 actcgtgcag gtatgactat cacacgcatc gaggatgtca ctcctatccc aacggatggg
     4801 acgaagaaga aaggcggacg tcgaggacgc cgagtatgag gaggaataga aatggattgt
     4861 gagatcattg aagaagagga caaccggatt cggattctgc ttaaggatac ggatcacgca
     4921 gctgtgaacg cgctccgtcg aaccatgatt gcggacaccc ctaagatggc gattcatcag
     4981 gttcgcttca cacaatcaac cgaggtcacc gatgatcaga tttgggagac tatcggatca
     5041 attccagacg aagtaatcgc tcaccgactt gcgatgactc ctattccatc cgatacccaa
     5101 gatttctcgt ttgaagatga gtgtgtcaat tgtaaggaca tggtcgagtc gcagcgtggc
     5161 tgcccaatgt gtaacatcgt ctatacttgt aatgtcaaag gaacccctga ggggcgcgct
     5221 gtcaaggcga gcgacctcga ggtcttcggc gatttatcac tctctatccc tgaggaattt
     5281 ggtgatatca ctatcaccaa gctatacaag ggtcagatga tttcactcac ggctaaggcc
     5341 aagaagggct atggtcgaga ccatgtgaag tggcagcctg tatgcggcat taccttccag
     5401 agtcgtcagc atgcagtcct ttccgacaag aaagcagcta agtccctatg gggacttgga
     5461 ttaacggtca ccgagaagga tttcggaaag aatggacgta tcgaggatat tcagatggtg
     5521 gacaaggttc gcgccgatct ccatcatgtc ggtccaagta ccgatctagg tcgagatttc
     5581 ggtaatgcga ttactctcga agatatcgat ggggaataca ttctgagcta cgaaacggac
     5641 ggttcaatga aggcccgcac agtctttgaa ctcgcaactg catcacttgg agagcgcttt
     5701 gcatcactct ctggtgattt ggatatcgtc ctttgattga gcgtggcctc aatggccgtc
     5761 gtgacaacta ccgctagact cggcggacat atcaccttgg cattcacggt ccactctgat
     5821 tccgaagaac tacatgaaca ggggtccatg ggtattgggc tttgcatcga ggctggcctt
     5881 tccacttctt gtcgttcgga tccatcgcgt tcatcgggcc ttatggtaat ttcaaacggg
     5941 ctaccaattg attctgatct tcatcgattg gtgcttgagg aatgtgcacg attcgatccc
     6001 tctctttatt cgatgcatca cacattcgat ttggcctgtg aattaccctt ttcacagggt
     6061 tttggattgt ctgctgcagg ctcaattacc gccgcacgtt gcttgattgc tcattcagat
     6121 atccccttac acttgcacga acctctagta tgggctattg ctcatcgagt tgaacgtcga
     6181 cacagcggtg gattgggaga cgttacagcc ttgcatgcag ggggtgtagt ccgccgaatc
     6241 acacctggtg cgacacacca gattgaccag attgaaccgg ttatagtcgg tacggggcct
     6301 ggccgttctg atgggtgggg atcttcgatt ccattgctct tagcttggcg gcctagtggg
     6361 tcaaagcaca cttctacgta catcgattct gaaggatgga gtcaacgaat tagaatcgca
     6421 ggagagattg ccatggagac aatgtctagc aacccgtggg atatgactcg ctggccagag
     6481 ataatcgatg cagcacattg ttttgctaaa caatccggat taatcgagga ttcaggacgc
     6541 gcttccctac ttgatgaggt ccgctgggca ttgaaaccca tagagaaaga tatcgaagtg
     6601 atgctttgca tgcttggaga aagtgttgtt gttgtgcctc gtgaattaga ttccggaaat
     6661 cgaatggatg aggcggaaaa tctccttgta aatctcacat ctctaaaatg cgctcaaaca
     6721 gtattgagct ccatttcatg agcgtgattc gttatgctcg attaatcgtg atagatctac
     6781 gggcattgca tcgagttttt gcgcacctct caaatgtaga ccatcacaga atccgtgtcg
     6841 atagataatc gccccttgtc catatgcttc agtgtagcga ttcacttgtt tctgtgtctt
     6901 cttacgtgga aagcttagtg cagaaccgaa gaagtgtttg gcatcaatcc atgcacatgg
     6961 aatcccattg attcggaggt catcaagaaa gaggagatct ggtgtcctga caggtcgtcc
     7021 ttccaagagt atctgctcct tcgatagttc tccttgacgc cgaaatcgga caccaaggga
     7081 ttcgaagtga tcgcacagga tgtcttcgaa gaggtctgca gcgagatggg tttcagattg
     7141 atcgacgtta gccacacgat ctgcttcttc agcaattcga aattgttcct gatctcgttc
     7201 gttcatacga ctaggttctt tcagcattat cttgatttga ttctttgaat gctttcttgc
     7261 ggttagaata gctctgaaga cattaaccgg gggaccatct actaattccg caagttcaag
     7321 aatcccagtc ctgttatcgt atctacgtct gagatccttc tttcggtcca tgattcgacg
     7381 atgtgagtag acagatttct cttgattgat tgcggccctc agcgatagcg cttgctctaa
     7441 gccgatggga taatcctcaa tgattttagc aatttcatca acacgttcct cttccagaaa
     7501 tccgaattct ccacgtttta caattaactt acctactgct ttctgaacat taagaggaac
     7561 cgggctgata ggccactcaa tctcaatagt ttctggttta ggatctatgt tttcagggat
     7621 ccccattgcc cgattcttgg tctcaaatcg ttggattgcc ctaaggcatg tctgctcgtc
     7681 tttcccccaa acagagccct ctccagtttc attcatgggt atctcactct ctcatcgacc
     7741 ctctatgaac accttggatg gattcagagg aaggcgagac caggttggag tggagccgca
     7801 aatcgtgcct ttccagagac gtcttcccct tctccagcta catagacctc gatgtcttcg
     7861 atatttatgg cttcagcgat gaacaatgcg gcggacttta tgctcgcggc ttcattatgc
     7921 tttgaacgaa tcagagtttt ctcagtatct cgtagagtaa atactcggcc acgcgtcttc
     7981 ttactaccaa ttgttagagc acgccagtac tgcatcactt caccccgcat tgcttcatct
     8041 acgaatgtag aatgttgctg aatgaacgca gtcccctcgc gcataaagtc gaattcggta
     8101 tcagcaagat ctagtgcctc gatgaggaga tccagtttcc aattcggagt tgtttgaatc
     8161 accaagcggg taactggttt ctccgagtgt cgctctgcaa gtcccttcac atttcgtgct
     8221 gaatcgatga gttccttgag agcactttct tctgagagga ttaagacatc atcatcgcca
     8281 atactagggt cattgattat cgtctctgcc agagttgtat catttccaag atggaaattc
     8341 cattcttcag ccatatgtgg tgtcgctgga tacagcatcg cgccccaaac tgtgagatgt
     8401 ttcttcagtt cctttgaacc aactccaccc cggcgcattg cccactggag gtcggttagc
     8461 atatcgaaat gactgatcat aacaccttct ctaatgcgaa catcatccat tgcctcccac
     8521 caagtatgca tgtttgatcg acgcttcgca gctagccagt catccatcgg tccgacttca
     8581 tcggaaacct cgtcgaggag gttaagcaca gagaaaatct ggtgcatttg acggtggttt
     8641 gcttctacag cagaatctga ccagtccatg ccagcttctg gattggaacc aaacaggatg
     8701 aatagacgga cagtatcggc accgaattgt tcaatcatta tctctggact caccgtattc
     8761 ccaagactct tactcatttt cgctgaacgc gagccgagaa gttctccgca ttgtggacaa
     8821 tcatttcccg ttaaatccac atgatgctct acgttacagg aggtgcagta aggcgttggt
     8881 gcgttgacca taccctggca gacaagacgg gagaatggtt cggaaacctt gttcattcca
     8941 aagtcccgca gtgcctttgt gaaaaatcga gcataaagga gatgcatgat tgcatgctct
     9001 atgcctccaa tgtataggtc cacgccacct tccatccagt agtcaattgt ctcgcggtca
     9061 tagggggcat tttcattcat cgcatcgcaa aaacggagga agtaccatga ggaatcatag
     9121 aatgtatcca tggtatcggt ttcccttcgt gcctctcctc cacaggtggg gcagattgtt
     9181 tggacaaatt ccgtatgtga cccaagtggg ttgccactgt cttcttcaga gaaaaccacg
     9241 tcaagaggaa gcctaactgg taggtcttct ttgggaactg gaataacgcc acattttgta
     9301 cagtggacaa atggaatagg tgtcccccag aatcgctgac gcgaaagtaa ccaatctttg
     9361 agtctgaatt gcgtactccc cttaccggcc ccctcggcct caagcgcacg aattacagcc
     9421 tgttttgcat cgtcaccata cagaccgtcg aaaccttctc tcgacgaacc aatcatccac
     9481 cctagtcctt cgaatgcctt gccttcagta atcggttcag atccttcact ttcgctgagg
     9541 acacgacgaa tctggatgtc atatttctca gcaaagtcgt gatctcgttg gtcgtgggcg
     9601 ggtactgcca ttactgcccc tgtaccatag gatgcgacca caaagttgcc tgcgtagatt
     9661 ggtatttcct cacccgatag aggattacgg gccatgcgcc cgaggaatac ccctttcttc
     9721 tcacggagca tgttgattcg ttcgaattcg gttaattttg cgcattcatc tgcaagcgcc
     9781 tgaaattctg cttcttgttc agtacctgca acgatctctt cgcagagtgg gtgttcgggt
     9841 gagagtgtaa cgaaggttac tccgaatatg gtatctggtc gagtagtaaa cgccgcgata
     9901 gtgtggtctg aatccacgac cggaaaatga atttctgccc catgagagcg cccaatccag
     9961 tttctctgca tcgccttgac atgctctgga aaaccgatat catcgagacc atcgagtaat
    10021 tcgtctgcgt aggcagtcat cctgaggaac cattgagcca tctctttttg gacgacttcg
    10081 gaggagcatc tccagcaccg attgttcttg acctgttcat tggcgagaac cgtctcgcaa
    10141 tcattgcacc aattgacagg agcagtcctt cgttcaacga gtcctgtttc gtagaattta
    10201 aggaaaatcc attggttcca gcgatagtat tctgcattgc tggttgctaa ttcacggcgc
    10261 caatcgtaac tgaaccccat acgttggaga tcttctcgga tggattcgat attaccccat
    10321 gttacatcgt gtggatgccc ccccttgcta cgtgctgcat tttccgcggg catgccgaat
    10381 gaatcgtagc ccattgggta gaggacattg aatccacgca agcgtcgata gcgagcaata
    10441 ctatcgccta tgctgtagtt acgtacatgc cccatatgca tatgtccaga gggatatggg
    10501 aacatctcaa gacagtagaa cttcggtttg gattgatcta catccgaatc gaaggactcc
    10561 gcctccttcc aggccaactg ccacttcggt tcgatggtat tcggctcata ctctaccatc
    10621 gtgcaccgct cctcggattc ggtatgaacc atcggccttc cgttcttgaa tccggtggac
    10681 aggttctgct ctacctgccc atcatacatc tgggtcggcg ctttcgagca ggaatagtgc
    10741 ttcacgtgtg agtctgtatc ggaaacgcat tcctacccga tcacgttcaa tcagaccata
    10801 ggcctcgagg gtcttcagat ggtggctgat aagttgctga ctactttcta gacgtacagc
    10861 gagttctttc tgacttaggt taacgatatc gttaccagtt gcatctagaa gatcaagaat
    10921 gcgtccttgg agagagttcg gatcagggga taggagaggg acagggaggt cattttcatc
    10981 taatttcgag tcaatggtgg aggggtaata tcgcatcata cgaccatctc ttcggcgcca
    11041 aatcatctcg gtttcttcga gaactttcag atgatgagct aattggccgt tactcatgtc
    11101 cagtgcagcc agtagagctc ggaagtggac accagggttt gccacgaggt agccaacgac
    11161 tcgtccgcgt tggaagtcac catcgtagtc gcgtcgacgc accattccaa tcagagtaag
    11221 gccaccgttg agtaaaccaa ttcgaatcca ttctgtattt gcaacgaaaa gcaacacaat
    11281 cgagagaagt gatgtggtga cgaccacagt cgttgctggt gctgcaatct gttggataaa
    11341 tggtgtagat tcgctatctt cactttccat actagtagag gtggaatcgt ctgcagggat
    11401 ccattgatcg agaacttcct caattacgaa gccaggcccc catgctgcgc agtgtgattg
    11461 ggttctgagt ggtgcttcga tggtccggta gacaccctgt tcaccgtcga cagcggcgaa
    11521 ggaagcatcg ttactcatct caagagctct ctcttcacct acaggtgaga taagtatcca
    11581 acaaccaccg ttgtcggtgc ggaccctact ccaagttcct tcaatgatct ccactgacaa
    11641 aatagtctct tcttcgtcag ccatgatttc ttcctcgtcc accacttcca cgttttcctc
    11701 tacagcttct tcagtgtctt cgattgtgaa tgtcagactt gtttggattt caggaacaga
    11761 ctgcagtgtg aatagaatcg tatgttgccc cgatacatca tttgagagcg tgtgagataa
    11821 tccttcgaag atgaaggtgt caccttctgt taatctaatc attgaatcgt caagcccgca
    11881 ggagagcgca cttgaacgag gactctgttc gtccccatct agagatgatt cagaccggat
    11941 agcacaatcg cttgtccaga tgaaatctac aggcaattct ccgttgttcg tgatagatag
    12001 gtcaaacctc actaagtcat cgacaacttc gtactcatcg acagagaata cgatattatc
    12061 ggttggttga ttagatgctc tacattcctg tgccgcgttc ccatccaata gttcgaagcc
    12121 ccttatcgag gattgtccaa tttgggggag attggcttgc attaccatgt ttgaaccaat
    12181 ccaaccgcag ccatttgtgt ccacagtaga tacctcatca gcccacagaa tagtttcatc
    12241 tcccggtaga aggttgagtg tagtgagtgg tgcatcacag ttcgcagcct cggattgatc
    12301 atgcatccaa aggccccgtt catcaaggac agaaattggt gctgcgcaag atgctgagta
    12361 ttccaagatg attttctcag gaccgacatt cttcgcgacg actcgtacat cgatatccga
    12421 ggccgtgggg gccattgaat cgctgagaga gtgggattcg atactaatct ctacatcgga
    12481 gagcgttgat tcactcacgg tatgaaccca gttgaatatc tgtgctgcgg gatcgtttcc
    12541 gatgatccac acgcttgccg accttagccc agaaataacc gcatcattga gtgaatgctc
    12601 aatccaacca aggtgatgag aatcacctgc gttgattatg acatcttccc cacatccgat
    12661 tcctgactcc attggtgtgc cgccatcgag tgaccataga atgtcacagt catcgtaacc
    12721 ttggatgcta actgaatccg ttccatcatt atggataatt gcgctgatta ccagacgatc
    12781 ggatgattca gagacatctc ctgatgtaaa tggaaggata atcgcttcca tgcggatatc
    12841 gttcgggagt gaggttttct gttgaatctc gagaatctgt cgagcaacct caacttcttc
    12901 accgaattga gctaggattt cataggttcc agtagtcaga tcattgccat ttgaggtgaa
    12961 atcatagcgg actgtacctg cttctagaat ctcacctgta tcgagggttt caccacgttt
    13021 ttgaacggga cagagccgct ccgtttccaa atcataaacg acaaccccaa ccgaatcaac
    13081 gatttggaag gtataggggc atgtcgggtt atactcaata ctgtgtgata tggaatctga
    13141 gtttacggct tgaatcttga actctactgc ctcacctgcg atgaagtgta ttccattcat
    13201 tggttctagc ccttcaatgg aggtgtacgg cccatttcca ccctcagcag aggccgctcc
    13261 gatgctcgat agcaggaggg cgagaaccag aaggatacct cgctgccgct ggctcatgga
    13321 gattcaatgt tctcctcctc gtatgaactg attggtgcag ttgaattgtg acctccgtgg
    13381 catccatagg tcaaacaggt ctgggctgca catgatgcaa ccaggagagt tcgatcggcg
    13441 cacccatgac gatggcatcg aagtatgggt gacacaaatg ggcccattca tgaatatgaa
    13501 tacggctttt atcgatagaa agaatggtat tgttgccatt attgatccct ttgattccaa
    13561 tcgatgggtg gaggctttgg atgaagaggg cctcaagcca actcaccttc tgtacaccca
    13621 tactcatcgt gaccacactg ctggatttca gaaaatgatc cgcaacgatt tcggacacga
    13681 cctcgaggtt tgggcgcata gtgaagccgt cgatcctgtt tggctgcggt ttgatgtctt
    13741 ccgccccgtc catgccactc atctttggga gcatgtcacc cgtacagatg ttgaatggtc
    13801 tgcaggttct atccagttaa ccatcacaca cacgccaggt catgcgccag gtcatgttac
    13861 gattcatggt cacggagtat atcatgcggg cgatcttttg tttacctctg catgtggtag
    13921 agacgacctt cccggtggag atcctctaac cctttggagg agtattgccc atgctaagaa
    13981 tcagttgatt ggaatgccca gggattggcg tttaatccct gggcatcgat atgattggat
    14041 agatggtaca acgcccgatt gggtttccat tggtgagtgc cttcagcaca actatgcgtt
    14101 gaactcgcca acattggatg ccataaattc gatggaataa tcagaggtca tctaaactag
    14161 ggatggatgc aagagcttgc gcagcctctt gttcttggtg acgctgccat tcaggcatct
    14221 caacccaacc gagttccttc gccttttcga aatcaccttg cttggcatag taatccgccc
    14281 atgccgatct ccgttcatct tcttctgcga aagcattctc ctgaacttgt aatcgacgtt
    14341 gttcagcgga gtatcgtcgc tttgctgctt ggcgtgaaat cattgccata aggatcgcag
    14401 ctagtaagaa tatgactagg aataatcccc cacctagaag tatagtcatg aaactcgtgc
    14461 tttcctgccc ttctgtgcct tcgtttaagg caggatcaat gatggcacat gtagctccga
    14521 attcagaggc atctggatcg aatgggcaag aatctccttg atcagatacc ccgtctgaat
    14581 cactgtccaa acaaccgact ctgtcgatgt acgaagtgcc tggctgggac ttacaatcat
    14641 cgggctcaaa cgcatccttg gttccgttgt caccatatcc atctctatcg aggtcctcat
    14701 tctgcgatgg gaggagtggg aaggcatctg gttcgtatcc agtgctgtta tcgccgtatc
    14761 catctccatc catatcagac cattgtgtgg agtcgtcggg gaaggcatct ccatactgga
    14821 cacggttgac gacgtcaact gattgccctc catgactgct gtttaccgtg acggtaatgt
    14881 tggtgtatcc gtagttgtca ccatggccat caagatcgtc atcttcccac tggagggggt
    14941 catcagggaa ggggtcaata ccgtcagaat atccgtcccc atcggtatca gtacaaccga
    15001 gcattccacc cattgaggag ttgcctgcaa gagttggaca atcgtccatg tttggcccaa
    15061 tctggtcggg atatccatcc ccatctccat cagaccaagc aaatccgtca tcagggaatg
    15121 gatcctctat gtctgcagtc ccatcattat cggagtcggg gcaacctcga acttcttctt
    15181 cagtcattgt cccgtattct agtgggcaga tatctggttc agtaccgtct tgattgtcac
    15241 cgaaaccatc tgagtcagta tcatgccatt gggtcgaatc gttggggaac caatcaccat
    15301 tggttccact aggtacgtca ccatatccat ctccatctga atcggtacac tggacactgt
    15361 catcaataaa gagatctgga ctgttaccat tcgagttttc gccgcaacca tctccatctc
    15421 gatcagccca ttgggtggaa tcgtctggga atgcatcgaa gacatctgca taggtgtccc
    15481 catcacgatc agggcaccca aagtgttcca gatcttccat ttcttgactg gtagtgttgt
    15541 acactgcagc ccagatacta gtgcccgctt
//
LOCUS       DUKB01000085           11014 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_38443, whole genome shotgun sequence.
ACCESSION   DUKB01000085 DUKB01000000
VERSION     DUKB01000085.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11014)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11014)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11014
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_38443"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="HA345_02900"
     CDS             <1..588
                     /locus_tag="HA345_02900"
                     /inference="COORDINATES: protein motif:HMM:TIGR04534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hyalin"
                     /protein_id="HIH84337.1"
                     /translation="STWQVADINSGSSSGGANDIIVMGTRLYFGADDDISGDELWVHE
                     TTNGSTWLVADIYSGVDGSEARDFVAMGTRLYFEANDDIHGFELWAHETTNDSTWQVA
                     DIRSGSGSGYAGDIVVMGTRLYFSASDGITGSELWVHETTNGSTWQVADIKSPHSGVQ
                     NDIVVMGTRLYFEADDGWLGDELWMMEIEHTITYS"
     gene            complement(669..2531)
                     /locus_tag="HA345_02905"
     CDS             complement(669..2531)
                     /locus_tag="HA345_02905"
                     /inference="COORDINATES: protein motif:HMM:NF012470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HIH84338.1"
                     /translation="MQRTVAILVVIVMVSTSIGCLSEDVKQESEIYGCSDSTALNYNP
                     NATNDDGSCYQVIEENQDDNNVLTGCTNPQARNFIANATEDDGSCDLSMNVILMIGDG
                     MGWEMVRAAAIYSQINSGIQGNLLTDFYTSGKGNGLTMQELSGFQIATTYSTTVDGSK
                     KNSLRVDTGSNTPTASEDYRDIEFDPRENLVRYDPNLGGASPWDSRYYHNDDSTSFDP
                     LYITYDYPDSAQTATTLMTGVKTFYNAVGVDLNERANPSLGDIASDEGMCVGISSNVP
                     ITHATPASAFAKINSRYRFHDGSISNSMDGDDVLSWYDNSDGINILLGTGNPNSHVND
                     FYVPSSYLDEFTSNSNNTLLLNSPNSADALHSATSAYDSASDGKILGLYGGIGQANLP
                     YSGANGSYDQTGWGLNLKNGPPSDISRDYGPLTKEEYILKERDENPTLAEMSASMLEA
                     CGDDEQGFFLTIESGDIDWAAHSNNLDALIGSVIDFDKAVATVVDWIEKNGGWERNML
                     VITADHDHYLTLTDSFPELIRNDNALNLTLGGNVEDMGHFWGPSKSDPYGGQSHTNRP
                     VPVFFQGDCSKIIDQSVGEGFDTYGYYAAGVSGMIDQVHIHLAMKAALMGHCVD"
     gene            complement(2612..4282)
                     /gene="idi"
                     /locus_tag="HA345_02910"
     CDS             complement(2612..4282)
                     /gene="idi"
                     /locus_tag="HA345_02910"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein
                     motif:HMM:NF002995.0,HMM:NF012568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate delta-isomerase"
                     /protein_id="HIH84339.1"
                     /translation="MAGDVLEGEDHEQADMMDEMCILVDEGDMPIGSASKLDCHRGAG
                     LRHRAFSVLIFDDQNRLLLQKRANDKITFPGVWANSCCSHPLDIEGERETDEASGVRN
                     AAVRKMEQELGIPMGSIPQESLQFVTRMEYEARMNEVWVEHEIDHILVTRANVEANPN
                     PNEIDECRWVTQNELEDMVKAHNNGELVIAPWFDLIRINLLKDWWNDIDDMSKHVDGI
                     IHRFIQERPDRAGLSMMERHRVAAEQCIARAIEKSTEPRLAGAMMHLIEGGGKRLRAV
                     LPSLVGEAVGHHHAGHHDLGAAIEIIHNFTLVHDDIMDNDPIRRGRPAVHIAYDMPTA
                     INAGDAMLALAFEMIAESKDIRGEMMRDLVRVIGRMVRNVSEGQQMDMDFENREDQVS
                     EEEYLRMIGGKTAAMFETCALTGAMLAGASTEIQEACRKWGLETGLCFQLMDDIIDIT
                     GDTETLGKPAGSDVLEGKRTLMAIHALKQDPASLPTFHAIFGKGESGKDLLSKAIKEM
                     ESVGSIDYGRTRAMEHHASAHVHLAKLKKSEARVILENLTDWQLERMS"
     gene            complement(4319..5140)
                     /locus_tag="HA345_02915"
     CDS             complement(4319..5140)
                     /locus_tag="HA345_02915"
                     /inference="COORDINATES: protein motif:HMM:NF012899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84340.1"
                     /translation="MVERRRAVIKLGGGLITVKNGLCEPDHDSILISTEAIARLVNQG
                     WQIALVHGAGSFGHAKAKRWRLNEGEINAYLGEEDGISNQKEAVYAVQKDMIALNELV
                     TESLSDHGIKAITHHPHQWAHGTGAEFTGNLDFLGKAPVTITHGDVVDVRDKGFGILS
                     GDDLMFRIATEWEGVESCIFCLADCDGILTHPPDHPDATLLNTWDSSIGFGGRHESDI
                     DVTGGIDYKALRAASIAEIVPQVWFVDGRYSSRIVDACNGVKTIGTRILKSPVRL"
     gene            5213..5536
                     /locus_tag="HA345_02920"
     CDS             5213..5536
                     /locus_tag="HA345_02920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84341.1"
                     /translation="MAPTIDEFRRYLQARRNDLDAIADPDERERVRVRIDAALQEALD
                     FSAAVEIREELKSRVFEEVDSSARLIEAAESRPIERVDGDECSKCDAPLEADIEFCPA
                     CGHRP"
     gene            complement(5540..6160)
                     /locus_tag="HA345_02925"
     CDS             complement(5540..6160)
                     /locus_tag="HA345_02925"
                     /inference="COORDINATES: protein motif:HMM:NF014001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
                     /protein_id="HIH84342.1"
                     /translation="MRTGERETLGRRLARVCRHDPDRYGLEMDINGWVDIREFVDALR
                     DKEQRRFGRWLRPHHIKAVAECDGKGRYEVRGNTVRATYGHTVEIELDLPTDNIPNAL
                     YFPCGDDELEVLMDIGLLPGDRSHVHLSQTIDKAVEAGRLGGKKLKRPIILEIDTARM
                     IADGDSVWRAGTTVYLAEKVAPQYLDRIEEDHDDLAHHVAQWDEEE"
     gene            6343..7479
                     /locus_tag="HA345_02930"
     CDS             6343..7479
                     /locus_tag="HA345_02930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007857332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HIH84343.1"
                     /translation="MDAYICGYVRSPFTRAHRGALKDVRPDDLAGQVAFELLTRTGVN
                     PVDLDDVMIGCAYPEGEQGLNIGRIVTHYLKGPSNIPGMTTNRLCGSSMQVMHTAAGM
                     ISRGWGDMFLCGGVESMSRIQRGGFNRSPSPFLEEIMPDAYISMGLTAENVAERYSIS
                     RVRQEEFALASHQKAILAKQKGLLDEEVASVCSSDVTYGVDVDGCMRESSLEAMAGLK
                     PAFAEEGVVTAATSSPLTDGASFSLIASQGAIDSHGLSPMARIVSAAVAGVHPDEMGL
                     GPIPATQLALSRAGITVDDLDVIELNEAFSSQSIACIDELNLPVENINLDGGAIAIGH
                     PLGASGARIMGKSASLLQRTGGRYALATMCIGGGMGIATILERI"
     gene            7522..8520
                     /locus_tag="HA345_02935"
     CDS             7522..8520
                     /locus_tag="HA345_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84344.1"
                     /translation="MFNRGGREEATKNLQVDEEGDCSRCGGDAQPSSIQGYLKCVRCE
                     YEWPDPNAVSSGPKRETIHDEEKKVEEFKQELEKGSLRGVLGIESQLSNEQEATLGRL
                     QDKWIDGLAGTFNAAEEERKPLMISFDGEDNIVATDLAIISVLGNEFDGGEEIRIEYP
                     GQDTEFYSMDARDDRGWRVGRTIPDTCRNIASIINRRSTIVHAEGVDDTIVFEPRDAS
                     INPGSVVIFVDDPGGKNMLLERDGRIIDVDAMMTIEDYREMLGLVLDDGVITPSEDEL
                     LWIMRSNLGITDEQHLQLLINRFGNGVIKECPACHGMITYLPDHGGWWCEPCQSWV"
     gene            8579..9607
                     /locus_tag="HA345_02940"
     CDS             8579..9607
                     /locus_tag="HA345_02940"
                     /inference="COORDINATES: protein motif:HMM:NF018435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84345.1"
                     /translation="MAGDNDLYIGIDLGTFRSVLTSSAGHEEQVLTVVGTPKDPIARN
                     MLGKDVLFGEEALKNRLALNLYRPLEHGVIKDTPEDKKFIAHFINHLINLGDPEDYDT
                     VVAVIGAPAEASFTDQTAIFDAASGSVNAAMIISEPFAVAYALDMIGHTIVIDIGAGT
                     CDIAREYGTIPGPDDQMHTSYAGDHIDNTLIAEVQKKYAGAQVTKDMARRWKQQYSFV
                     RTAMPDAPVVVDFSIQGKAMSLDITDCIQRACESIVDPIVANVKALISSSNPEFHNEF
                     RNNMVLAGGGSGIKGLNIMIEERLGDIGECTVQVVDDPVMLGALGGLRLSMEVPTDMW
                     SSLTLASR"
     gene            complement(9612..10163)
                     /locus_tag="HA345_02945"
     CDS             complement(9612..10163)
                     /locus_tag="HA345_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84346.1"
                     /translation="MDGLRSMDEQMRKAHRQQSLFIALNGFTSAWVLGSMHEMMTILG
                     YAFATFHAVAALLFSRRANVIAMRIGQLSYIISSTVLFLFGALWLSSGIFIDGFLLLI
                     LGIFGVIRTRRIEDPRYRSWYTSGSTGLAQSMLARSNEVIASCPSCTSLLAIVVEQMT
                     PNDVCPHCEQPLVPSVRNQEEQE"
     gene            10239..>11014
                     /locus_tag="HA345_02950"
     CDS             10239..>11014
                     /locus_tag="HA345_02950"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014494.1,HMM:NF016051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84347.1"
                     /translation="MPRDVDVVLKGHSLEGRKVLLGISGGIAAVETVRLARELRRHGA
                     EIHVIMTRAATEVISPLAVRWATQANVDVEWDGDMAQLDGYDGLLVAPATRNTLAKHV
                     NGVMDSPLVMAMSAATGNGTPVMVVPSMHNDLFDDAVTQDLLKKVAVRGAKVLVSPSE
                     EGRRKQPDPVSIVAEFAHHLNRTLNHRNVLVLLGGTESSIDDLRVVTNRSSGHTGFAI
                     CDGLHRLGHRVTILAGRTSFDVDHSRFKLIYSPDVASMNS"
BASE COUNT         2669 a         2660 c         2754 g         2931 t
ORIGIN      
        1 tcgacttggc aggtagccga catcaacagc ggtagcagca gtgggggggc taacgatatc
       61 atagtcatgg gaacacgact gtactttggg gcggacgacg atatcagcgg cgacgaactg
      121 tgggtgcatg agacaacaaa cggctcgact tggttggttg ctgacattta cagtggtgtc
      181 gacggcagtg aggcgagaga tttcgtggcc atgggcacac gactgtactt tgaggcgaac
      241 gacgacatcc acggcttcga actgtgggcg cacgagacta caaacgactc gacttggcag
      301 gtagccgaca tccggagcgg cagcggaagt gggtatgcgg gcgatatcgt agtcatggga
      361 acacgactgt acttctctgc gtctgacggc atcaccggca gcgaactgtg ggtacacgaa
      421 acgaccaatg gatctacttg gcaggtagcc gacatcaaaa gccctcacag cggagtgcag
      481 aacgatatcg tagtcatggg aacacgactg tactttgagg cggacgacgg ttggcttggc
      541 gacgaactgt ggatgatgga aatcgagcat acgattactt acagttgaac tcagaatcca
      601 gttcgatttc gagggtgaaa tcgaaggtgc aggccatgtg ctctgaactc acttacgatg
      661 gttcagtatc aatcaacaca atggcccatc aatgcggctt tcatagctaa atgaatgtga
      721 acttggtcta tcattccaga tactcctgct gcgtaatatc cgtaggtatc gaatccctcg
      781 cctacgctct gatctataat ttttgaacaa tctccttgga aaaatactgg aacgggccga
      841 tttgtatggc tctggccacc atatggatct gatttactag ggccccaaaa atgccccatg
      901 tcctccacat tacctccgag tgtgagattc aaagcgttgt cgtttcgaat caattctggg
      961 aaactatcag ttagcgtcag ataatggtca tgatctgctg tgattactaa catatttcgt
     1021 tcccatcctc cattcttctc aatccaatca acaacggtag cgactgcctt gtcaaaatcg
     1081 atgaccgagc cgattaaagc atccaaattg ttggaatggg cggcccaatc aatgtcgcca
     1141 gattcaatcg ttaggaaaaa tccctgctca tcatctccac aggcctctag catacttgct
     1201 gacatttcag caagtgttgg attttcatca cgttctttta ggatatattc ctcttttgta
     1261 agtggtccgt aatctctaga aatatcggat ggggggccat ttttgagatt gagtccccat
     1321 cctgtttgat cataagagcc attggcgcct gaatatggga gattggcttg tcctatccct
     1381 ccatacaatc ccaatatttt cccatctgat gcactatcat atgctgatgt tgcagaatga
     1441 agggcatctg cagaatttgg actattgagg agtagagtat tgttggaatt agatgtaaat
     1501 tcatcgagat atgatgaagg tacatagaaa tcgttaacat gggaatttgg gtttccagtt
     1561 cctaacaata tattgattcc atctgaatta tcataccaag agagtacatc atcaccatcc
     1621 attgaattag aaatggaccc atcatggaaa cgatatcgac tgtttatttt cgcgaatgct
     1681 gaggcagggg ttgcatgtgt aattggtaca ttggaactaa tccctacgca catcccctca
     1741 tctgaagcaa tatctcctaa actcgggtta gctcgttcgt tcagatcaac tcccactgca
     1801 ttgtagaatg tcttgacgcc agtcatcagc gtagttgcag tttgagcact atcgggataa
     1861 tcataggtaa tatacagtgg atcgaaagaa gtagagtcat cgttgtgata gtatcttgaa
     1921 tcccaaggag aagctcctcc gagattgggg tcgtatcgaa ctaagttttc ccttggatcg
     1981 aactcaatat ctcgatagtc ttcacttgca gtgggtgtat tgcttccagt atcaacacgt
     2041 aggctattct ttttggaacc atcaacagtt gttgaatagg ttgtagcaat ttgaaaacca
     2101 gataattctt gcattgtaag gccatttcct ttacctgagg tgtagaaatc tgttagtaaa
     2161 ttcccctgga tacccgagtt aatttggctg taaattgctg cggctcgcac catttcccac
     2221 cccatgccat caccaatcat caggatgaca ttcatgctga ggtcacaact tccatcatct
     2281 tcagtagcat tcgcgatgaa attacgcgct tgaggattgg tacaacccgt tagcacgttg
     2341 ttatcgtcct gattctcttc tattacctgg tagcatgaac catcatcatt ggttgcatta
     2401 ggattgtaat tgagcgcagt agaatcgctg cacccataga tttcagattc ttgctttaca
     2461 tcttcactta ggcatccaat ggatgtggac accatcacaa tgacgaccag tattgcaaca
     2521 gttctctgca ttaattacgc gcctaacctg aataggcata atcattcgga ttgtgggatt
     2581 gtcctcatcg agccatcgaa actaggccga ttcaagacat acgttctaac tgccaatcag
     2641 taagattctc aagaatcact ctagcctcgg attttttgag tttagcgagg tgcacatggg
     2701 cggaagcatg gtgctccata gcacgtgtcc taccataatc gattgagcca actgattcca
     2761 tttccttaat tgccttcgag agtaagtcct tgcctgattc tccctttcca aatattgcgt
     2821 ggaaggtagg gagggatgca ggatcttgct tgagagcatg aatcgccatt agtgtccgct
     2881 tcccctccaa tacgtcactt ccagcgggtt taccaagtgt ctcagtatcg ccagtaatgt
     2941 cgattatatc atccatcaac tggaagcaga gtccagtctc taggccccac tttcgacaag
     3001 cctcctgaat ctcggtagag gcgcccgcga gcatagctcc tgtcaaagca caggtctcaa
     3061 acatggctgc cgtctttcca ccaatcatcc gaaggtattc ttcctcggat acctgatcct
     3121 ctcgattctc aaaatccatg tccatttgtt gtccttctga gacatttcgt accatgcgtc
     3181 caatcacccg caccagatct cgcatcatct cgccacggat gtccttggat tctgcaatca
     3241 tttcgaaggc gagggcaagc attgcgtcac ccgcattgat tgccgtaggc atatcgtagg
     3301 cgatatggac tgcggggcgc cctcgtcgaa tagggtcatt gtccattata tcgtcatgga
     3361 cgagtgtgaa gttgtgaatg atttcaatgg cggctccaag gtcgtgatgt cctgcgtggt
     3421 gatgccctac agcctcgccg acaaggcttg gaagaacagc acgaagccgc ttccctccac
     3481 cctcgattag gtgcatcata gcgcctgcga ggcgtggctc agtactcttt tcgatggctc
     3541 gagcgataca ttgctctgct gcaacccgat gcctctccat cattgagagt cctgcacgat
     3601 ctggcctttc ttgtatgaat cgatggatga tcccatcgac atgtttcgac atatcgtcta
     3661 tatcattcca ccaatctttc agtagattga ttcgaatcag atcaaaccaa ggcgctatta
     3721 ccaattcacc attattgtgg gctttgacca tgtcttcaag ttcgttttga gttacccaac
     3781 gacattcatc gatttcgttc ggattaggat tcgcttcgac atttgctcga gtcacgagaa
     3841 tatgatcgat ttcgtgttca acccaaacct cgttcattcg tgcttcgtac tccatacggg
     3901 tgacaaattg aagagattcc tgcggtatag atcccatggg gatccctaat tcctgttcca
     3961 tctttctcac tgcagcgttt ctgacacctg aggcctcatc tgtctcacgt tcgccttcga
     4021 tatctagagg atggctacag caagagttcg cccagacgcc aggaaaggta attttgtcat
     4081 tggctctttt ttggaggagg aggcggtttt ggtcatcgaa aatcagaacc gagaatgcgc
     4141 gatgacgcaa gcctgcgcct cggtgacaat ccaacttgct agctgatccg atgggcatgt
     4201 ctccctcatc tacgagtatg cacatctcat ccatcatgtc ggcttgttca tggtcctcac
     4261 cctcaagcac gtcaccagcc atctcgtcac cctctttttt gtctgcgttg ttcccgggtt
     4321 ataatcgaac gggagatttg aggatgcgtg tgccgattgt cttaacccca ttgcatgcat
     4381 caacaatgcg ggaggagtat cgtccatcga caaaccaaac ctgaggtaca atttctgcga
     4441 tacttgcagc gcgcagtgcc ttgtagtcga tacctccagt gacatcgata tcagattcgt
     4501 ggcgtcctcc aaagccgata gatgaatccc aagtgttgag taacgtggca tcagggtggt
     4561 cgggtggatg tgtgagaatt ccatcacaat cggcgagaca gaaaatacag gattcaactc
     4621 cttcccattc tgtcgcaata cggaacatga ggtcatctcc ggaaagaatc ccgaaccctt
     4681 tgtctctaac atcgacgaca tctccgtgcg tgatggttac aggtgcctta ccaaggaagt
     4741 cgagattacc tgtgaattca gcacccgtac cgtgtgccca ttggtggggg tgatgtgtaa
     4801 tcgctttgat tccatgatcg gacaaagatt ctgttactag ttcgttgagt gctatcatat
     4861 ctttttggac agcataaact gcctctttct ggtttgaaat cccgtcttct tctccaaggt
     4921 atgcattgat ttccccttcg ttcaatcgcc atcgctttgc cttcgcatgt ccgaaggaac
     4981 cggccccgtg gacgagcgca atctgccaac cttggttaac aagccgggca attgcttctg
     5041 tcgaaattag aattgaatca tggtcgggtt cgcaaaggcc atttttcaca gtgatgaggc
     5101 ctccgccgag cttgatgacg gctcgtcgtc tctcgaccat ggccttccca gggatttctc
     5161 attgatgatg gtgcgcacac agattcatcc gttccacagt attcggcagg gcatggcgcc
     5221 tacaatcgac gagttccgac gatacctgca ggcgcgtaga aatgatctcg atgcaatcgc
     5281 tgatcccgat gaacgggagc gcgttcgagt gcgaatagat gcagcactac aagaggcatt
     5341 agacttctca gcagcagtag aaatcaggga ggaactcaag agtcgagtat tcgaagaagt
     5401 tgattcttca gcacgtctaa ttgaagccgc tgaatcgaga cctattgagc gtgtagacgg
     5461 tgatgaatgc tctaagtgcg atgctccgtt agaggctgat attgagttct gtccagcctg
     5521 tggtcacagg ccttgaggat cattcctctt cgtcccattg agctacgtgg tgagccagat
     5581 catcatggtc ttcttcgatt cgatctagat actgtggcgc gaccttctct gcgagatata
     5641 ccgtcgtgcc tgcacgccat actgagtcgc catctgcaat catacgagca gtatcaatct
     5701 cgaggataat gggtcgcttg agtttcttac ctccaaggcg gcctgcttct acagccttgt
     5761 cgatggtctg tgagaggtgg acatgacttc ggtcaccggg tagtaggccg atatccatca
     5821 atacctcaag ttcgtcgtcc ccacagggga agtagagagc gttggggata ttgtcggtgg
     5881 gtaggtcaag ttcaatctca accgtgtgtc cataagttgc tcgaactgtg ttgccacgga
     5941 cctcatatcg tcccttgcca tcacactcgg ctacagcctt gatgtggtgc ggacgtaacc
     6001 agcgaccaaa ccgtcgctgc tccttgtcac gcagagcatc tacgaattcg cggatatcaa
     6061 cccagccatt gatgtccatt tcaaggccgt aacgatccgg gtcgtgtcta cagacgcgag
     6121 cgaggcgtcg gcctagagtt tctctttcgc cggtacgcat gatgaatttc ccttcggaat
     6181 tgcatacggg gcagaggttg tcatctgaga agtagccgtg gacgttgcat tcacgaatca
     6241 tgggaacgaa tcctgcgaat cctcggccat agataagacg attgcatcca ttcgctcgac
     6301 tttattcggc atattcattc gacgcggtgt ggccccaagg ccatggacgc ctacatttgt
     6361 ggctacgtcc ggtccccgtt tactcgcgca caccgggggg cgctgaagga tgtgcgtcct
     6421 gatgatctcg cagggcaggt cgctttcgag ttgctgacac gcacgggtgt gaatcctgtt
     6481 gatcttgatg atgtgatgat tggttgtgcc tatcctgagg gcgagcaagg gctcaatatc
     6541 gggaggattg tcacacacta cctcaaaggt ccctccaata tcccagggat gaccacaaat
     6601 cgtctatgcg ggtcatccat gcaagtgatg catactgctg ctggaatgat ctcgcgtgga
     6661 tggggcgaca tgttcctctg tggaggtgtt gaatcgatga gccgtattca acgaggtggc
     6721 ttcaatcgtt ccccctcgcc gttccttgag gaaattatgc ctgatgctta catcagtatg
     6781 gggctcacgg cagaaaatgt cgcagaacgc tattcgattt ctagagtgcg tcaggaggaa
     6841 tttgctctcg ctagtcacca gaaggcgatc cttgcgaagc agaaaggcct cctagacgaa
     6901 gaagtcgctt ccgtttgctc atctgatgtg acctacggtg ttgatgtcga cggttgtatg
     6961 cgtgaatctt ctctggaggc catggctgga ctaaagccgg cattcgccga ggaaggagtt
     7021 gttaccgctg cgaccagttc acctctaacc gatggcgcct ctttcagctt gattgcctca
     7081 cagggggcaa ttgattcgca tgggctcagt ccaatggcgc gtattgtatc tgcagcagta
     7141 gcgggagttc atcctgatga gatgggtctt gggccaattc ctgcaactca acttgctctc
     7201 agtcgtgctg gaattactgt tgacgatctt gatgtcatcg aattgaatga agcgttctca
     7261 agtcaatcaa ttgcgtgtat cgatgaattg aatctacctg tggagaatat caatttagat
     7321 gggggggcta tcgcaatcgg ccatcctttg ggcgcctctg gtgcgcgtat catgggtaag
     7381 tcagcaagcc ttcttcagag aacaggtggc agatatgcat tagcaactat gtgcataggt
     7441 ggcgggatgg gaattgccac aattcttgaa cgcatctgat gttgcgcaac gcctatgtgc
     7501 gcagcctcat gtaggccact gatgttcaac cggggtggtc gagaagaggc gacgaagaat
     7561 cttcaggtcg atgaagaagg cgactgttct cgatgtggag gtgatgctca accgtcgagc
     7621 attcaaggct atcttaagtg cgttcgttgt gaatacgaat ggcctgatcc gaacgctgta
     7681 tcttctggcc cgaaacgtga gacaatccat gatgaggaga agaaggtcga ggagttcaag
     7741 caggaacttg agaagggaag tcttcgaggt gtccttggta tcgaatctca attgagtaat
     7801 gagcaagaag cgactcttgg tcgtttacag gataagtgga tagatggtct agcggggact
     7861 ttcaacgcag ccgaagagga acgtaagcca ctgatgattt ccttcgatgg agaggataac
     7921 atcgttgcaa cagaccttgc tatcatctca gtacttggaa atgagttcga cggtggcgag
     7981 gaaatccgta tcgaataccc agggcaggat acggagttct acagcatgga tgctcgcgac
     8041 gatagaggtt ggcgtgttgg tcgtacaatc cctgacacat gtcgaaacat cgcttctatc
     8101 attaatcgta gatccacaat cgttcatgca gagggtgtgg atgacacaat cgtgtttgag
     8161 ccacgtgatg ccagtatcaa ccctggaagc gttgtaatct tcgtggatga tcctggtggc
     8221 aagaacatgc tccttgaacg agatggccgt atcatcgatg tggatgctat gatgacgatc
     8281 gaggactacc gtgagatgct tggacttgtt cttgatgatg gtgtgatcac accttcagaa
     8341 gatgaacttc tttggattat gaggtctaat cttggaatca cggacgagca gcacctgcaa
     8401 cttctcatca atcgttttgg caacggggtc atcaaagagt gtcctgcatg ccatggcatg
     8461 attacctatc tccctgatca cggtggatgg tggtgtgagc cttgtcagtc atgggtctaa
     8521 tcacgtcgtg ctgttcatat actgccacac atagcctaac atccaaggtg atggatacat
     8581 ggctggagat aacgacctat acattggaat tgacctcgga actttccgtt ccgtattaac
     8641 ttcgagtgct ggccatgagg aacaagtcct cactgttgtt ggcactccaa aggacccgat
     8701 tgctcgtaac atgttgggta aggacgtgct ctttggtgaa gaggctctga agaaccgtct
     8761 tgctctgaac ttgtaccgcc ctctcgagca tggtgtgatc aaggatacac ctgaggacaa
     8821 gaagttcatc gcacatttca tcaatcactt gatcaatctt ggtgaccctg aagattacga
     8881 tacagtcgtc gccgtcattg gtgctccagc tgaagcatca tttactgatc agacagcgat
     8941 tttcgatgct gcatctggca gcgttaatgc tgccatgatt atctctgagc cattcgcagt
     9001 tgcttacgct ctcgacatga ttggccacac aatcgtcatc gacataggtg ctggaacttg
     9061 cgatatcgct agagaatacg ggactattcc tggtcctgat gaccagatgc atactagtta
     9121 tgctggagac catatcgata atacactcat cgcagaggtc cagaagaagt acgctggagc
     9181 ccaagtcacc aaggacatgg cgcgccgctg gaagcagcag tattccttcg tccgcacagc
     9241 aatgcctgat gcaccagttg ttgtcgactt tagtatccaa ggaaaggcaa tgtcactaga
     9301 cattactgat tgcatccaga gagcttgtga gtcaatcgtt gacccgatcg ttgccaatgt
     9361 gaaggcatta atttcctcaa gtaaccccga gttccacaat gagttccgta ataacatggt
     9421 tcttgctggt ggcggatcag gaatcaaggg cctgaacatc atgattgaag aacgcctcgg
     9481 cgacattggt gagtgcacag ttcaagtcgt tgatgacccc gtaatgctcg gtgctctcgg
     9541 cggcctccgc ctatccatgg aagtgcccac agacatgtgg tcttcgctaa cccttgcttc
     9601 tcgctgagcg attattcctg ctcttcttgg tttcgtactg atgggacgag aggctgttcg
     9661 cagtgtgggc agacatcgtt tggggtcatt tgttctacaa cgattgctaa tagactcgta
     9721 cacgaaggac agctggcgat tacctcattg gaacgtgcaa gcatgctctg agccaaacca
     9781 gtcgatcctg atgtgtacca cgaacggtat cgcgggtcct caattctacg tgtacggatg
     9841 actccgaaaa tccctaggat gagaagtaga aatccatcaa tgaatattcc agaagacaac
     9901 cagagtgctc cgaataagaa gagtacagtt gaactgatta tgtatgacaa ctgtccaatc
     9961 ctcattgcaa tcacattcgc tctccttgag aagagaagtg cagcaactgc atggaatgtg
    10021 gcgaatgcgt accctagaat tgtcatcatt tcatgcattg atcctagtac ccacgcagaa
    10081 gtaaagccgt tcaatgcaat gaaaagggac tgctgccgat gagcttttct catctgttcg
    10141 tccattgagc gcagaccatc catgtacatc tgaatcggtg ctgagccatc agtcttggcc
    10201 atcgacggtc tattgagggc ggagttattc cgctggttat gccacgggat gtcgacgtcg
    10261 ttctgaaggg gcattccctc gaagggcgca aggtcctcct cggcattagt ggcggcattg
    10321 cagcagtcga gacagttcga ttagcacggg aactccgcag gcatggtgcc gagattcatg
    10381 tgattatgac tcgagcagcg actgaggtaa tttcccctct cgcagtccga tgggcaaccc
    10441 aagcgaatgt cgatgtggaa tgggacggag atatggccca acttgatggc tacgatgggc
    10501 tattagttgc acctgccacc aggaatactt tggcgaaaca tgtgaacggt gtcatggatt
    10561 cacctttggt gatggcaatg tcggctgcga ccgggaacgg aactccagtc atggtagtcc
    10621 cttcgatgca caatgacctc ttcgacgatg cagtgactca agaccttctc aagaaagtcg
    10681 cagttcgtgg agcgaaggtt ttggtatcac cctccgagga aggtaggcgg aagcagccgg
    10741 acccagttag tatcgtagca gagtttgccc accatctgaa tcgcactctc aatcatcgaa
    10801 atgttctcgt tcttctcggt ggaaccgagt cttcgattga tgatcttaga gtagtgacaa
    10861 accggagttc cggtcatact ggcttcgcta tttgtgatgg cttacatcgc cttggtcatc
    10921 gagtgaccat ccttgctggt cgaacttctt ttgatgttga tcattcacga ttcaaactca
    10981 tctattcacc cgatgttgct tcaatgaaca gtta
//
LOCUS       DUKB01000086           12038 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_11808, whole genome shotgun sequence.
ACCESSION   DUKB01000086 DUKB01000000
VERSION     DUKB01000086.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12038)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12038)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12038
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_11808"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(107..436)
                     /gene="pth2"
                     /locus_tag="HA345_02955"
     CDS             complement(107..436)
                     /gene="pth2"
                     /locus_tag="HA345_02955"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:TIGR00283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HIH84348.1"
                     /translation="MALIVRTDIDMSRGKIVAQAAHAAVEVALKARGTAMFERWRQAG
                     SRKISLIAPDLETLDDISSKLAHGIVSHVVKDAGHTEIPPGTYTVLGLLGPRNSIDIL
                     TENLGLL"
     gene            complement(450..1115)
                     /locus_tag="HA345_02960"
     CDS             complement(450..1115)
                     /locus_tag="HA345_02960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84349.1"
                     /translation="MLGLHALSAPSETVLHSEVLLVGLALMVLLNAGPASRNMRGIVI
                     SAALISVLVVSRVLLEPLPNIQPVTVALLLIGATLGVRRGIGIAILVTLLSNAFLGTG
                     IWTFFQAMGWSFVAWTGAMASNHLTNGEGELDMRNLVYFSIGAAIVFDLIVSMAALVA
                     DPSPSVFVTYLIVGIPYDLLHVAGNVAFAAWLGPVLHRILIRSRDSDVTISGSRLPES
                     YTQ"
     gene            complement(1177..2973)
                     /locus_tag="HA345_02965"
     CDS             complement(1177..2973)
                     /locus_tag="HA345_02965"
                     /inference="COORDINATES: protein motif:HMM:NF024753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HIH84350.1"
                     /translation="MRAKITILALMLLVHTCFIAYAGPTDEVTWSKDHNGMISTSPLI
                     LADSIIVKSTDGLTAYSHTGEELWIWAPPQVLLFEISPLYHHASMNLVVTGWTDGQVT
                     AHHPEDGEIAWSISTDSPMWGITGRIHEDQELLVVPTETGLLWIDPNDGSITREFTFP
                     DNATGYRHGATSIVENDNTWYLVGDEMGRIHRIDMNQSTIIAQYNSSRIRDSIHVLDV
                     QQGRYIVASNGIEANLSGLHVLDDSGPISSIELLGSVGTIAVHNSSVIVGDTNGLHLF
                     ECEVNCSLMDHHEGLGSITGEIRIHEVNGSSLVTTPWNVANGHWTAHRIENDTTLVPI
                     WTWYPEIENWLTAGIDYHLGVWAGGNDAGLLEVRGVPSSPTNSSNIEQNQEIESTESP
                     LFSPGIMLLIGLGLTGILILASQRNEMVETNLLRALSLIWLIVVVILAPAILEALTES
                     VTDTTVDADDDDPLWDEFPDSYIGTQVVCIDVPNGRDFVNAQNTSVHHDLTGFEIQRT
                     PHVDGRGEACIGGLEGHTNVESATIEAAGLLGLEIQIEDHALGSYLTGIGSFETASGD
                     GGWEYWVNDNHALVSIEQHPLPTSSVIHWRFL"
     gene            complement(3001..4263)
                     /locus_tag="HA345_02970"
     CDS             complement(3001..4263)
                     /locus_tag="HA345_02970"
                     /inference="COORDINATES: protein motif:HMM:NF012355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84351.1"
                     /translation="MKSIARTIAICLVLLTTAVYPVTAQPPLTEITIVSTDGTSTSEF
                     VEGGQNWTGYNYTVEAASLMNISANLTEDPNFGWYLNDLFGATSDAAWGDADYWYWGL
                     FELNGTVWEASSVGIDQVAVGASQSYAWAPTMDGTWIDNLESELSAIAAAALPQFTEM
                     TIVSTDGTSTTELIQGESSWTGYNYTLEAANMMNISSNLTEDPNWGWFLNDLFGATSD
                     AAWGDADYWYWGLFQENGSVWEATPVGMDQIEVGANQSYAWAPTMDGTWISSLEVKLS
                     EVAVMMECAQADYSIGLDSTGLAFNVTSLSIQPGESVCWTWTAASMPHNIAEVDNEGY
                     TSYNGGIRSGEAQSSMTFIHTFTENSTFHYVCEPHASVGMAGKIIVGDGGIVATQDIQ
                     VIEETPGFTTVTMALALLAAVLLTRRKD"
     gene            complement(4330..6420)
                     /gene="gatE"
                     /locus_tag="HA345_02975"
     CDS             complement(4330..6420)
                     /gene="gatE"
                     /locus_tag="HA345_02975"
                     /inference="COORDINATES: protein motif:HMM:NF003107.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HIH84352.1"
                     /translation="MVGEPVGEVSSSANLDPDALGFMCGLEIHQQLASGKLHSRQPSI
                     LYEASMETLSPDWKRVERRLHATSGESGVVDIASRFEQRRNRSFVYVQSPNSGLIELD
                     DAPPQGLDSDALDIALTIAALLEMHPVEVLQTMRKQVVDGSNTSGFQRTTLIGTTGKI
                     ATDRGEVGVGVLLLEEDSARKLDSERTPTGEKVFYILDRLGVPLVEIATDPDIIDPDH
                     AMETARTIGALLRSTRSVRRGLGSIRQDLNVSIACGDRVEIKGTQDLEWIPRIVRLEM
                     ARQLHFYRLANELRLEAGLPPLPPNRDDDDASIEASVLENATSRLPFEPEDLTEIFAD
                     STSSMVVQGLASGNRMLAVRLPGFAGRLGSKTLDADGAQMPRLGRELAGAAKLAGVAG
                     IFHSDELPAYGIEQEHVNRVREDLSLTDADAFVLCIAPEWQSHLALESVIERARVAHL
                     RIQQEVRNVVVKRGAPEDGTTSPMRPLPGSARMYPETDIPVHAIEKPHWEYILAHLPP
                     TSEERMELLTPLGLSDNQIEALLGSELDDWIHDPFSNGKSFPESTAPKSWASLLLDRT
                     RDDIAELATIDVKDVPWPLIAHALVVREEGSLTREGLVPLCAKALQQGAWPADSDGIR
                     AWLTVTAEHEGFKPADSSTLEAVIDEVLAEKADFIAERGMGAMGPLMGVILGKLGKGA
                     DGKAVSAILRERLS"
     gene            complement(6460..8607)
                     /locus_tag="HA345_02980"
     CDS             complement(6460..8607)
                     /locus_tag="HA345_02980"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012704.1,HMM:NF028516.1,HMM:NF036828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minichromosome maintenance protein MCM"
                     /protein_id="HIH84353.1"
                     /translation="MALQFDDFAARWDTFYDEVMISRIQSLTKDSNHLRVPFNEIQSW
                     DPDFGARILNQPKSLIERGQRSLRDKCRENGINIEPTLLLEHLPVDVEMDLGEIGSDD
                     LNRLRAVNVVITKRSEIRPRIYSAVFSCDSCGAHTEVRQDDERELKEPLECDGCQLPP
                     GNGAQSTRFSIDSDRCTWINNQYLEIQELPERVKGTGQPSRGRVLIEGIQCNMYLPGE
                     RMTGNLIPYTQAGYHRNKKTPMFEIVYSLHSATRESQPFHDIQPTDEERDEIQEIAGR
                     EDLMRLMQDSIAPSIIDVNSKLTFVKRSLAMQLFGGVSRRNADGTRSRGDIHILLMGD
                     PGVAKSQLLTYMSKIAPRARFASGGNISAAGLTAAAIKDSFGDGRFSLEAGILPLSDL
                     GIACIDEIDKISASDKGSLHEAMEQQSISVSKGGITTQLRARCAVLSAANPKKGTFTV
                     GPNQNLMLAFDQTGLPVPLATRFDIMWLMKDEVNEDNDAKIARHIMEGRLSGVPENRV
                     EEDSFEDPMKKDEEKSIKTNGGRDYLSVPFLRKYVAYAKRNHSPLIGEEAKILILNYY
                     TKARNTYADNEQMAANWDDEKPIPISARALESLIRLAEAHARMHLRDEVTADDAQMAI
                     AIFSHWREEEKVPSEVAMATGSKFNQREMVDIIKGTVGELAKEGDGIAHETDVYNRAM
                     ARGMDVEDIDRILQLCRHQLHIISPQPGQWRPN"
     gene            8798..9223
                     /locus_tag="HA345_02985"
     CDS             8798..9223
                     /locus_tag="HA345_02985"
                     /inference="COORDINATES: protein motif:HMM:NF015444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HIH84354.1"
                     /translation="MDSAMTGGDAMIRLDPGEEIHASLKAWAKENGVKAAAITSGIGR
                     IRDTSAGFLDGDGVYRAIDRAEPMELLTLMGNLALHEGEPFTHLHITGMTDDHMVVGG
                     HLFSAVVHITAEIHLRILESMPMIRCPLEGSEFIRLEFD"
     gene            9228..10157
                     /locus_tag="HA345_02990"
     CDS             9228..10157
                     /locus_tag="HA345_02990"
                     /inference="COORDINATES: protein motif:HMM:NF013909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HIH84355.1"
                     /translation="MKMRVPSVYEVMAALCTEYRAHEIPDSSRAWNGPQVIPNPDSNC
                     NKVMTATDASLEVIHRAVNDGADLLIVHHGLTWTLGVIPLPSSNELEAERVRVALANN
                     LAILALHLPMDAHPILGNNAVLADGLGIQRDGTWFASKGYPSPLDSSLIQGPSLTTEW
                     PQIDTLEDGRLTMEIGLHGRFPTPMNRSEIKSRIQHILGKEQTEPEIIRIFPEDRGME
                     SDEIETIAICSGAAGGAVVDAKDLGVDALLSGEGPFQSAILAQEATISLILAGHHATE
                     TVGPRATADWLNQIAEANEWSMDAQFISAPIGL"
     gene            10223..11332
                     /gene="purM"
                     /locus_tag="HA345_02995"
     CDS             10223..11332
                     /gene="purM"
                     /locus_tag="HA345_02995"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HIH84356.1"
                     /translation="MDEGIDYASSGVDIDLEGAAVSSLIGALSGSVRKPGSEGAPVDL
                     PGGFGGLLEFGNRWLALATDGVGSKLQIANELGQLQGVGHDCVAMNVNDLLCVGAEPI
                     AFVDYIATPKPSPDEHAALGASLAEACSLARVTLAGGETATLPGIVKELDLSGTALGW
                     MPKDAAITGEHIGSNDVMIGIPASGIHSNGYSLVRAVLERTGADLTEPAPFDTEHSNR
                     AIRRWMSGDVTLGEVLLNPTRIYVDPVQDLIEALDESGDGSRSDIRGIAHITGGGLSN
                     LLRLHPSRGYHIDSPLPVLPEFHWIQEMGSVDDREMHRTFNMGTGMILIVSNESADTI
                     LHWLKERDAGVSIIGRTNDSGIVTHVNQNIRFEHY"
     gene            11379..>12038
                     /locus_tag="HA345_03000"
     CDS             11379..>12038
                     /locus_tag="HA345_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84357.1"
                     /translation="MAHCELCRTETDEAVMFGGLCAVCEPWWHLVRDLVQRTPLWQIE
                     AMADDAAMVDLERVRKNGIEANDEGWAEVISWLLPDTSADSLLDGWSDDSVLSLLTNM
                     SSVFDEDSPLFNGGTPLRHHVQHKAFMGPCILNGHHIQTSSLGLDVGDWTLTYGPGHL
                     LLRLILSQGSDPGGRFVRLMKQLMGMNGIDFRPIIDRMELKKDQLWIQDFQSPGAVRP
                     FI"
BASE COUNT         3074 a         2965 c         2922 g         3077 t
ORIGIN      
        1 cagtgaggtt ctcattttct taagcaacaa caaatcatag gtattgtaga ggtttcaatg
       61 gtcttagcag tttgctcaat gggacatctc agtgactacc ctctgtttag agaagaccga
      121 gattctcagt taggatatct atcgaattac gaggtccaag taaaccaaga acggtgtaag
      181 ttccaggagg gatttcggta tgacctgcat ccttgaccac gtggctaaca ataccatgag
      241 caagcttgga actaatgtca tcaagtgttt ccaaatctgg tgctatcagc gatatcttgc
      301 gtgagccggc ttgacgccag cgctcaaaca tcgcagtacc tcgggccttg agtgcaactt
      361 caactgcagc atgagctgct tgagcgacta tcttgcccct gctcatatcg atgtctgttc
      421 gaacgatgag agccatcgtg acgttggaat cactgggtgt aggattcagg taatcgactc
      481 ccagaaattg tcacatctga atcacgggaa cgaatgagaa tacggtgcaa cacaggtcct
      541 agccaagctg caaacgcgac gttccccgcg acgtgaagca agtcgtatgg gatgccgacg
      601 atgagatagg tcacgaagac cgaggggctt ggatctgcaa cgagagccgc catggataca
      661 atgagatcga agacgatggc agcgccgatc gagaagtaca caaggttgcg catatcgagt
      721 tccccctcac cattggttag gtgattggat gccatggcac ctgtccatgc aacgaaggac
      781 caacccatcg cttggaagaa ggtccagatt ccggtgccaa ggaatgcatt ggagagaaga
      841 gtcaccaaga ttgcaatacc aataccgcgg cgaacaccca gagttgctcc gataaggaga
      901 agcgcgactg ttactggctg aatgttaggg agcggttcaa gcagaacacg actcacaaca
      961 agaacagaaa tcaaggctgc cgagataact ataccacgca tatttcgaga tgctggacct
     1021 gcattcaaca ataccatcag agcgagtcct acgaggagaa cctccgaatg gagcacggtt
     1081 tcagaaggcg cactgagcgc gtggaggccg agcataactt ccaatgagtg tgattcggcc
     1141 ttaagccgtt acgattggtt ctggcttaga atgccctcac aggaaacgcc agtgaataac
     1201 ggaagaagtt ggcaaaggat gttgttcaat tgaaactagt gcatgattgt cgttaaccca
     1261 gtactcccaa ccaccatctc ctgatgcggt ctcgaaacta ccgattccag tcagataaga
     1321 ccctaaagca tggtcctcaa tctgaatctc taatccaagc aatcccgctg cttcgatagt
     1381 agcagattcg acatttgtat gcccttctag gcctccaata caagcctcac ctcgtccatc
     1441 gacatgtggc gtcctttgaa tttcaaaacc cgtcaaatca tgatgtaccg atgtgttctg
     1501 agcattgacg aagtcgcgtc cattcggtac atcaatgcaa acaacttggg taccgatgta
     1561 cgagtctggg aattcatccc atagaggatc atcgtcatca gcatcaacag tagtatctgt
     1621 aactgactct gtcaatgctt caaggattgc tggtgctagg ataacgacaa cgattagcca
     1681 gataagtgaa agtgcgcgaa ggaggttagt ttcaaccatc tcattacgct gagaggcaag
     1741 gataagaatc ccagtcaaac ctagcccgat taggagcata atacctggag aaaacagggg
     1801 cgattcagtg gattctattt cctgattttg ttcaatgtta gaggagtttg tggggcttga
     1861 tggaacacct cttacctcta acaagcctgc atcattccct cccgcccaaa ctcctagatg
     1921 atagtcaatt ccagcggtta gccagttctc aatctcagga taccatgtcc aaatcggaac
     1981 aagtgttgta tcattctcaa tccgatgtgc ggtccaatgt ccatttgcta cgttccaagg
     2041 agttgttacc aaagaagaac cattcacctc atgaattcta atctcccctg taatcgatcc
     2101 taggccttca tgatggtcca ttagagaaca gttgacttca cattcaaaca agtgcaaacc
     2161 attggtatcg ccaacgatga ctgaactatt gtggactgca attgtcccca cacttcctag
     2221 aagttcaata cttgatatgg ggcctgaatc atccaataca tggagtccag atagattcgc
     2281 ttcaattcca ttagatgcaa cgatatagcg gccttgttgc acatctagaa catgaattga
     2341 atctcgaatt cgagaagaat tgtattgtgc aattatcgtt gattgattca tatctattcg
     2401 atggattcga cccatctcat caccgacaag ataccacgta ttgtcgtttt caacgattga
     2461 tgttgctcca tggcgatacc cagttgcgtt atcgggaaaa gtgaattctc gagttatcga
     2521 accatcattc ggatcgatcc ataacaatcc ggtctctgtt ggaacgacga gcaattcttg
     2581 atcttcgtga attctgcccg tgattcccca catcggtgaa tcagttgaga tagaccatgc
     2641 tatctctcca tcttctgggt ggtgtgcagt aacctgtcca tctgtccatc cagtaacgac
     2701 caagttcatt gatgcatggt gatacaaggg tgaaatctca aacaacagaa cttgaggggg
     2761 agcccaaatc cacaattctt cgcctgtgtg agaatacgct gtgaggccat cggttgactt
     2821 gactattatc gaatctgcga ggattaaggg agatgttgaa atcatcccat tatgatcttt
     2881 tgaccatgtt acctcatcag ttggtccagc atatgcaatg aagcatgtat gcaccagcaa
     2941 catgagggcg aggatggtaa tcttcgccct catggagttt gatggggtgc ctgtgaggac
     3001 tcaatccttc cgacgtgtga gaaggaccgc agcaagaagt gctagagcca tagtaaccgt
     3061 cgtaaaacca ggtgtttcct cgatgacttg aatgtcttga gtcgcaacaa ttccaccatc
     3121 acccacgatg atttttccag ccattccgac cgaagcatgt ggttcacaga catagtggaa
     3181 agttgaattc tctgtgaagg tgtgaataaa tgtcatacta ctctgtgctt cacctgaccg
     3241 gatacctccg ttgtagctag tatatccttc attgtcgact tcagcgatgt tgtgtggcat
     3301 agaagcggca gtccaagtcc agcacacgct ctctcctggt tggatggaga ggcttgttac
     3361 attgaaggct aggccagtag aatcaagccc aatcgagtaa tcagcttgtg cacattccat
     3421 cattactgcg acttctgata gcttcacttc gagactacta atccaagttc catccatagt
     3481 tggagcccaa gcgtagcttt gattcgcacc tacctcaatc tgatccatgc cgactggtgt
     3541 tgcttcccag accgaaccat tttcttggaa tagtccccaa taccagtagt cagcatctcc
     3601 ccatgcagca tctgatgttg caccaaacag gtcattgagg aaccatcccc aattcggatc
     3661 ttctgtaaga ttagatgaga tattcatcat gttggcagcc tccagggtgt agttatagcc
     3721 ggtccaggat gattctcctt ggattagctc ggttgtggag gttccatctg ttgatacgat
     3781 tgtcatttct gtaaattgtg gcagggccgc tgctgcaatc gctgacaatt ccgactcgag
     3841 attatctatc caagttccat ccatggttgg ggcccaagca tagctctgac tagcacctac
     3901 tgcaacctga tctatgccaa ctgaggaggc ttcccaaact gttccgttca actcgaaaag
     3961 gccccaatac cagtagtcag catctcccca tgcagcatct gatgtggcgc cgaataggtc
     4021 attcagatac cagccaaaat tcggatcttc tgtgagattt gcggagatgt tcatcaaact
     4081 agcagcctct acggtgtagt tgtagccagt ccagttttgt cctccttcca caaactcact
     4141 tgtggatgtt ccatctgtgg atactatcgt aatttccgtc aatggtggtt gagctgttac
     4201 agggtaaaca gctgtggtca ataagaccag acaaatggct atggttcgcg caatactctt
     4261 catggaatta tttggccgtg taaacggcta ataaacacgt gtagttttcc agtattagat
     4321 tggactaatt taggaaagac gctctcggag aatagctgat actgcctttc catcggctcc
     4381 cttaccgagt tttccgagga ttacacccat caacggaccc atcgcaccca taccacgttc
     4441 tgcgatgaaa tctgctttct ccgctaatac ttcgtcaatg actgcttcaa gagttgatga
     4501 atcagcgggc ttgaatcctt catgctccgc tgtaacggtt aaccaagcac ggataccatc
     4561 tgaatcagcc ggccaagccc cctgttgtag agcctttgca cacaacggaa ctaggccttc
     4621 ccgtgtaagc gaaccttcct ctcttacaac tagagcgtgg gcaatcagag gccaaggaac
     4681 atcttttaca tcgattgttg ctaactcggc gatatcatca cgagttcgat cgagtaagag
     4741 tgatgcccat gattttggag cggtggactc agggaaagat ttcccattac tgaatggatc
     4801 atgtatccaa tcatccaact ctgaacccag aagggcttcg atttgattat cagacaatcc
     4861 aagtggtgta aggagttcca ttctctcctc cgaagttggg ggcaggtgtg caaggatata
     4921 ctcccaatgt ggtttttcga tagcatggac tgggatgtcc gtctcaggat acatcctagc
     4981 tgagccgggt aatggccgca tcggagacgt ggtcccatcc tctggtgcac ctcgcttgac
     5041 aactacgttg cgaacctcct gctggattcg aagatgtgca acacgagcac gttcgatgac
     5101 cgattctaac gcaaggtgtg actgccattc aggtgcgata cacaagacaa atgcatcagc
     5161 atctgtaaga gatagatcct cacgaacacg attcacgtgc tcttgctcaa taccataggc
     5221 agggagttca tcactgtgga atattccggc aacacctgca agcttcgcag caccggcaag
     5281 ttccctgcca aggcggggca tttgtgctcc atcagcatcc agagtcttgg agcccagacg
     5341 tcctgcaaaa ccagggagcc gaaccgcgag cattcggttt cctgaagcca agccttgcac
     5401 taccatgctt gacgttgaat ccgcaaagat ttccgtcaaa tcttctggtt caaacggtag
     5461 acgagaagta gcattctcga gaacagaagc ttcgattgat gcatcatcat catcacgatt
     5521 cggtggaagt ggtggcaacc ctgcttctaa acgaagttca ttcgcaaggc gatagaaatg
     5581 gagttgtcgt gccatctcca aacggacgat ccgtggaatc cattcgagat cttgagtccc
     5641 ctttatttcg actcgatcac cacaggcgat ggatacattg agatcctgac gaatcgaacc
     5701 aagaccacgt cgaacagaac gagttgagcg gagaagtgcc ccgattgtac gagcggtttc
     5761 catcgcatga tccggatcga taatatcggg atctgttgcg atttcaacga gaggtactcc
     5821 gagcctatcg aggatgtaga ataccttctc accagtaggg gttctctcgg aatctaactt
     5881 gcgtgcagaa tcctcctcca gtaggagaac accgactccg acttctcctc ggtctgtagc
     5941 aatcttacct gtcgtgccga tgagagtcgt cctttggaag cccgatgtgt tcgaaccatc
     6001 aacaacctgt ttccgcatcg tctgcaggac ttcgactgga tgcatctcga gtaaggctgc
     6061 aattgtcaaa gcaatatcca atgcatcgga atctaggcct tgggggggag cgtcatccaa
     6121 ctcaatcaag ccagaatttg gtgactggac atagacgaaa gagcgatttc tgcgctgctc
     6181 aaaacgagat gcgatgtcga caacaccgga ttcgcctgaa gttgcatgaa gacgtcgttc
     6241 aacacgtttc caatctggag aaagggtttc catgctcgct tcatacagga tactaggctg
     6301 ccgtgaatgc aactttccag atgcgagttg ctggtgaatc tctaatccac acatgaagcc
     6361 gagagcatcg ggatcaaggt tggcggagga cgatacttcg cccactggtt cgcccaccat
     6421 gaggttgcga gatggtggag ggatatgagc gccccgctct caatttggtc gccattggcc
     6481 aggttgaggt gaaataatat ggagttggtg acggcataat tggaggatac ggtcaatatc
     6541 ttctacatcc attcctctcg ccatagcgcg gttgtaaaca tccgtttcat gggcgatccc
     6601 gtcaccttcc ttagcaagtt ctcccactgt ccctttgatg atgtccacca tctccctctg
     6661 gttgaacttg gagccggtag ccattgcaac ttcactggga actttctcct cctcacgcca
     6721 atgtgagaaa atcgcgattg ccatctgcgc atcatcagct gtaacttcat ctctcagatg
     6781 catccgggca tgagcctctg cgagacgaat cagtgattca agcgcacgtg cactgattgg
     6841 aattggcttt tcgtcatccc agtttgcagc catctgctca ttatcagcgt aagtgttcct
     6901 cgccttggtg taataattga gaatcagtat ctttgcttcc tcaccgatta gtggagaatg
     6961 atttctcttc gcgtaggcaa catacttccg aaggaaggga acagagaggt aatcccgacc
     7021 tccgtttgtc ttgattgatt tctcctcgtc cttcttcatc ggatcttcaa aagaatcctc
     7081 ttccactctg ttttctggga caccagaaag ccgtccctcc atgatgtggc gagcgatttt
     7141 tgcatcgttg tcctcgttga cctcatcctt catcaaccac ataatgtcga acctcgtagc
     7201 gagtggaact ggaaggcctg tctggtcgaa agcaagcatc agattctgat taggaccgac
     7261 tgtgaaagtc cccttcttag gattcgcagc cgatagaact gcacaacgtg cacggagttg
     7321 ggttgtaatg ccacccttac tgactgagat agactgttgt tccatcgctt cgtgaaggct
     7381 gcccttgtca ctggcactaa tcttgtcgat ctcgtcaatg caagcaatcc ctagatccga
     7441 aagaggcaag ataccagctt caaggctaaa ccggccgtca ccgaatgaat ccttgattgc
     7501 tgccgcggta agaccggctg cggagatatt tcctccagag gcgaagcgtg ctcggggtgc
     7561 aatcttcgac atataggtca acaattgtga ctttgcaaca ccaggatcgc ccatcaacaa
     7621 aatgtggatg tcacccctac tgcgcgttcc gtccgcattg cgacgagata ctcccccgaa
     7681 gagttgcatc gcgaggctgc gcttgacgaa tgtcaacttc gaattgacgt cgataatcga
     7741 aggagcaatg gaatcctgca ttaaacgcat caaatcttca cgtccagcaa tctcctgaat
     7801 ctcatctctc tcctcgtccg taggttggat gtcatggaac ggttgggatt cgcgtgtggc
     7861 agaatgtagg ctgtagacaa tctcgaacat cggcgtcttc ttgttacgat gatatccagc
     7921 ctgagtatac gggattagat tccctgtcat ccgttctcca ggcaaataca tgttgcactg
     7981 gatgccctcg atgagaacac ggccccgtga gggttgaccg gtacctttga ccctctcagg
     8041 aagttcctgg atctccagat actggttgtt gatccatgtg catcgatccg aatcaatgct
     8101 gaatcgagtg gactgggcgc cgttgcctgg tggaagttga catccatcac actcgagtgg
     8161 ttccttcagt tcccgttcat catcctgacg aacctcagta tgggctccac aactatcgca
     8221 agagaataca gcagaataga ttcgagggcg gatctcagaa cgcttcgtga taactacgtt
     8281 gactgcacgg agtcgattca aatcgtcaga accaatctcg cccaaatcca tctcaacatc
     8341 tacaggaaga tgctcaagga gtaaggtcgg ctcgatgttg atcccgttct ctcgacattt
     8401 atcacgaagg cttcgttgac ctcgttcgat gagggatttt ggttgattga gaattctagc
     8461 tccgaaatcc gggtcccatg attgaatttc attgaatggt actcgaagat gatttgagtc
     8521 ctttgtcaag ctctgaattc ggctaatcat aacctcgtca tagaaggtat cccaacgcgc
     8581 agcaaaatca tcgaactgga gcgccatgat gttcaccgag gacttagagg gaatcttcga
     8641 cggtgtatga accaaacggc aaaacagcgt tcaacccgtt gatttccgat ggaaaaatgt
     8701 cgattctcac gtccatcgga acgactgatt caagccttcc aatgcagaaa tataacggtc
     8761 gaaacggata ggtactgaac ctgtcgtata ctgattcatg gacagcgcaa tgacaggtgg
     8821 agatgcaatg attcgcttag atcccggaga ggaaattcat gcttcactca aagcatgggc
     8881 gaaagagaat ggagtgaagg ctgcggctat cacaagtggt attggaagga ttcgtgacac
     8941 atcagcgggg tttctcgatg gagatggtgt ctatcgagca atagaccggg ctgaaccaat
     9001 ggaacttctt accctaatgg gaaatcttgc actgcatgaa ggagaacctt tcacccatct
     9061 ccatattaca ggcatgactg atgaccacat ggttgtgggt ggccatctat tctccgccgt
     9121 cgtccacatc actgcagaga ttcatctccg catccttgaa tcgatgccga tgattcggtg
     9181 ccctctggaa ggcagcgagt tcattcgtct ggaatttgat tgaggtgatg aaaatgcgag
     9241 tgccatccgt ctacgaagtg atggcggcat tgtgtactga atatcgggct catgagattc
     9301 cagattcaag cagggcgtgg aatggccccc aggttattcc caaccccgat tccaattgca
     9361 acaaggtgat gactgcaact gatgcaagtt tggaggtaat ccatagagcc gttaatgatg
     9421 gagccgatct cctaatcgta catcacggtc tgacttggac gctaggtgtg attccgctcc
     9481 catctagtaa tgaattagaa gccgaaaggg tacgtgtcgc acttgccaac aatctggcta
     9541 tcctagcact tcatctaccc atggatgctc atccaatcct tggcaacaat gccgtcctcg
     9601 cagatggtct tggtatccaa agagatggaa catggttcgc ctcaaagggg tatccaagtc
     9661 cactagattc gtctctgatt cagggtccat cactgacaac ggaatggcct caaattgata
     9721 ctcttgaaga tggtcgttta acgatggaaa ttggactcca tggacgattt cctaccccca
     9781 tgaatcgaag tgaaatcaag agccgaatac aacacatatt ggggaaggag caaactgaac
     9841 ctgagattat acgtatcttc ccagaagata ggggaatgga atctgatgaa atcgaaacaa
     9901 ttgccatctg ttcgggtgcg gctggtggcg ctgttgttga tgcaaaagat ctgggtgttg
     9961 atgccttgct gagtggagaa ggcccattcc agtctgcgat tctagctcaa gaggctacta
    10021 tctctctgat tctagctggc caccatgcaa cagaaactgt tggcccccgc gccactgccg
    10081 actggttgaa tcaaatcgct gaagcgaatg agtggagtat ggatgcccaa ttcatctctg
    10141 ctcctatcgg tctgtaaatg gattctgaag catacccaaa atcggcgatt ggttgatgtg
    10201 gcgtcggccc gggatgacgt ccatggatga aggcattgac tacgcttcat ccggtgtcga
    10261 catcgacctc gaaggcgctg ctgtctcctc tttgattggg gcgctcagcg gttctgtccg
    10321 caaaccagga tctgaaggtg cgccagtgga tcttcctggt ggattcggag ggctgcttga
    10381 attcggaaat cggtggcttg ctttggcgac tgatggcgtt ggaagtaaac tccagattgc
    10441 taacgaactc ggtcaattac agggggttgg gcatgattgt gtcgcgatga atgtcaacga
    10501 cttgctctgt gttggcgcag aaccaatcgc tttcgttgat tatatcgcca cgccaaagcc
    10561 ctctccggat gagcatgctg cgcttggcgc atcacttgct gaggcctgct ctctcgcccg
    10621 tgtcaccctt gctggaggag agactgctac tctacctgga atcgtcaagg aacttgacct
    10681 ctcaggtaca gcacttggat ggatgccaaa ggatgccgca atcactggcg aacacattgg
    10741 aagcaacgat gtcatgattg ggattccagc atcaggtatt cattcgaatg ggtattccct
    10801 tgttcgcgca gtcctcgaac ggactggtgc agacctcacg gagcctgctc ccttcgatac
    10861 agagcattcg aaccgtgcca ttcggagatg gatgtccgga gatgtcactc ttggagaagt
    10921 tctactgaat cccactcgga tctatgtgga ccctgtccag gaccttatcg aggcattgga
    10981 tgaatctgga gatggaagtc gaagtgatat tcgcggtatt gcgcatatca ctggcggagg
    11041 cctctccaat ctactccgtc ttcatccatc tcgaggatat cacatcgatt cgccccttcc
    11101 tgtgctaccc gagttccact ggattcagga aatggggagt gtcgacgacc gggaaatgca
    11161 tcgaactttc aacatgggca ctggaatgat actcattgtc tccaacgaat ctgcggatac
    11221 cattctccac tggttgaagg aacgggacgc aggcgtatct atcattggga gaactaatga
    11281 ttcaggcata gtcacacacg tgaatcagaa catccgattc gaacactact gagtttgatt
    11341 tcggcgattg aaataccgtt gaaggtattc aacatgggat ggcgcattgt gagctctgca
    11401 gaaccgagac cgatgaggcg gtcatgtttg gcggattatg cgcagtgtgt gaaccatggt
    11461 ggcatcttgt cagggatctt gtccagagaa cacccttgtg gcagattgaa gctatggcgg
    11521 atgatgctgc aatggtcgat ttagaacgag ttcgaaagaa tgggattgaa gccaacgacg
    11581 aaggctgggc agaggtaatc tcttggctct taccagatac ctctgctgac tcccttttgg
    11641 atggatggtc ggatgattct gtcctttcat tactgaccaa tatgagttcc gtcttcgacg
    11701 aagattctcc attattcaat ggtgggacac ctctccgtca tcatgttcaa cacaaggcgt
    11761 tcatgggacc ctgtatactc aatggccacc acatacaaac ctcctcactc ggccttgatg
    11821 tgggagattg gacacttacc tatggtcccg ggcatctact tctacgtcta atcctcagtc
    11881 aaggaagtga tccagggggg cggttcgttc gattaatgaa gcaactaatg gggatgaatg
    11941 gtatcgattt tcgcccgata atagatcgaa tggaacttaa gaaagaccaa ctctggattc
    12001 aagattttca atccccaggt gcggtgcgcc cattcatt
//
LOCUS       DUKB01000087            5255 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_100625, whole genome shotgun sequence.
ACCESSION   DUKB01000087 DUKB01000000
VERSION     DUKB01000087.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5255)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5255)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5255
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_100625"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="HA345_03005"
     CDS             complement(<1..224)
                     /locus_tag="HA345_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84358.1"
                     /translation="MYRSGNPALNDMLFVFQGMVENKMTIQGVTEKAALTFLLLVASG
                     MSIWGLALTGNPELAALVMTLGFVVNGIFY"
     gene            317..1825
                     /locus_tag="HA345_03010"
     CDS             317..1825
                     /locus_tag="HA345_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019397331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HIH84359.1"
                     /translation="MTWSAPMLRATPGDPLAGGNPRQVPGVCWSRCDATVMPNAKMRL
                     WNDELAAMLGGLESDPSIWVGGRLLKGMEPYAHRYGGHQFGNWAHQLGDGRALTLGHI
                     KTPAELIEVQLKGAGRTPYSRSGDGRAVVRSSLREYLCSEAMYHLGVPTSRALSLCTT
                     GEDVRRDMFYDGRPAMEPGAILARTAPSFVRFGSFQMLAADGDVDALRTLMGHVVTTH
                     EPGHHVNDDAGVVAWLTDVAERSAAMVCGWMRHGFVHGVMNTDNMSIHGLTIDYGPFG
                     WVEAHNPSWTPNTTDLPGRRYCYAAQPDVVGWNLARLLESLAFTMNDPELLHAVLDAY
                     REAYRSARQQAWIERLGLDDWTEEDELLVRDLQQFMYDLEIDHVPLLRHLAEGVTAAE
                     VLHDAGIIYAAEPDLVPIDSWIERWLERTSGSPNLAVMQRTVPAFTPRNWVLQLAIDD
                     AERGDWTKAEALATRLMRPFERLDEDEDAWWSGPRPDWALSRPGCSMLSCSS"
     gene            complement(1818..2489)
                     /gene="lipB"
                     /locus_tag="HA345_03015"
     CDS             complement(1818..2489)
                     /gene="lipB"
                     /locus_tag="HA345_03015"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: protein motif:HMM:TIGR00214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HIH84360.1"
                     /translation="MRPLRILRTEAISHPQMNGIMRDLQTARIADEIPDTILFTEHPE
                     IVTVGPKARRDGVIVPLGYETLDVDRGGGITYHGPGQLVVYPIIRWEGDEQSVPGVID
                     RLEQWMIASLQVIGIEGVHDDRMQGVWVNGRKICSIGLSFLKWVSRHGLAINIDTESG
                     RVEALDGCGLESGLTTSLHSLGYKHDLEGRLIDRNRLEEALLQTATAALGRTPLTPID
                     FDAIN"
     gene            complement(2525..3949)
                     /gene="lpdA"
                     /locus_tag="HA345_03020"
     CDS             complement(2525..3949)
                     /gene="lpdA"
                     /locus_tag="HA345_03020"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HIH84361.1"
                     /translation="MAKNRTCQVLVVGAGPGGYVAAIRAAQLGLQTIIVEGDRAGGTC
                     LIRGCIPSKAIIHASERFEALSQHAQDGGHMGINASSPELDMKALVGWKDSIVQRLNQ
                     GVEGLLKAAGADLIHGWATFVDAKTCKVETADGNIRIEAENVILATGSSPIELPFMPF
                     DEDRVCSSTGALDLDELPEKVAIVGGGYIGLELGCALARLGSEVTIIEGLDSILAIFD
                     KELRRPLEIWLKKHGVKVHTGCMAQGADVSEDGVTLRWKDSEDISQSIDVDKVLVTVG
                     RRPNTKNWGLEEMGIKMDDSGRFIAIDDGCRTNMPGVYAIGDVTGDPMLAHRASAQGE
                     MVAEIIAGHDRNWDKVAIPAIVFTEPEVVCVGLTPSEAEEAGEKIITGKFPLAANGRA
                     LTLEAEKTNGFVRVVARESDHVILGIQAVGSHVAELSGEFVLALEMGAVLEDIAATVH
                     AHPTMTESFHEGVLKTLGHAIHIS"
     gene            complement(3959..5236)
                     /locus_tag="HA345_03025"
     CDS             complement(3959..5236)
                     /locus_tag="HA345_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019371793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HIH84362.1"
                     /translation="MGTYEFRLPDIGEGVVEGEIVTWHVKVGDTVREDDPLLEVMTDK
                     ASVEIPSPVDGTITSATGSPGDIIPVGQVCIIFEVEGEGNSAGSAPKPEATPEPVKPA
                     PKPVPSSAPTPTPAPATHAPKQASTGASGKPLASPAVRQRARQAGIDLRDVAGGGPSG
                     RITHADIDAQIAGVSAPIPATSSSPAAVPRGVKRTSTEEVPVIGLRRKIAENMAESKR
                     SIPHFSYFEEVDVTELEALRQHLNATKADDQPKLTYLPFIMLALSKIMPDHPECNAHY
                     DDEANIVTRHGAVHLGIATQTDRGLYVPVVKHVESMDVWTAAAEMQRVSGAARSGSAA
                     LEDLSGSTFTITSLGRDGGLGATPIINKPEVSILGVHKANERPLVYNGRIEIRRVMNL
                     SSSFDHRVVDGADGAALIQHLKRMLEYPATIFM"
BASE COUNT         1136 a         1363 c         1371 g         1385 t
ORIGIN      
        1 atgtagaata tcccattcac aacgaatcct agtgtcataa cgagtgctgc gagttctggg
       61 tttccagtta gagccagacc ccaaatcgac attcccgatg ctaccaataa taggaatgtt
      121 agtgctgcct tttctgtgac tccttgtatt gtcattttgt tctctaccat tccttggaag
      181 acaaagagca tgtcatttag agctggattg ccgctgcggt acatcattca atcgaagtgt
      241 accgttgttc tcaacacttc cgtctgacac cacgtccagt ggcgaggttg atgtgggggc
      301 aacgaaggtc cggaccatga cgtggtccgc ccctatgctt cgggctacgc ccggtgatcc
      361 tttggccggt ggaaacccgc gccaggttcc aggtgtctgt tggtcaagat gtgatgctac
      421 tgtcatgccc aatgcaaaaa tgagattgtg gaacgacgaa ctcgccgcga tgttaggcgg
      481 cctagaatcc gatccttcaa tttgggtagg ggggcgattg ctcaagggta tggaaccgta
      541 tgctcaccgc tatggggggc atcaatttgg taactgggcc catcagctcg gtgatggccg
      601 tgcactcacg ttgggccaca tcaagactcc agccgagctc atcgaggtgc aactgaaggg
      661 tgctggccgt acgccgtatt cacgaagtgg tgatgggagg gctgtagtca gatcttctct
      721 ccgcgagtat ctctgcagcg aagccatgta tcacctcgga gttccaactt cgcgtgcatt
      781 gtctctatgc acgactgggg aggacgttcg ccgcgacatg ttctatgacg gccgtcctgc
      841 gatggaaccg ggcgccatct tagctaggac tgctccgtcg ttcgtgcgtt tcggatcttt
      901 ccaaatgctc gccgctgacg gcgatgtgga tgcacttcgt acgctaatgg gtcatgtcgt
      961 gacgacgcac gagcctggcc accacgtgaa cgatgatgca ggtgtggtgg cttggcttac
     1021 ggatgtagcc gaacgcagcg ctgcgatggt gtgtggttgg atgcgccatg gctttgtcca
     1081 cggcgtgatg aacacggaca acatgtccat tcacgggtta acgatagatt acgggccctt
     1141 cggctgggtc gaagcccaca atccgtcatg gacgcccaat acgactgact tgcccgggcg
     1201 ccgctattgc tacgcagcgc agccagatgt ggttggatgg aatttagccc gcttgcttga
     1261 atccttggct ttcacgatga acgatcccga actgctccac gccgtcttgg acgcgtaccg
     1321 tgaggcttac cgtagtgccc ggcagcaggc ctggattgag cgccttgggt tagatgactg
     1381 gacagaggag gacgagttgc ttgtacgtga tcttcagcaa ttcatgtatg atttagagat
     1441 tgatcatgtg cctctgcttc gtcacctcgc ggaaggtgtt acggcagccg aagttttgca
     1501 tgatgcagga atcatttacg ccgcagagcc ggatcttgtt cccatagact cctggattga
     1561 acgctggttg gaacgcactt ctggctcacc aaacttagcg gtcatgcaac gcacagttcc
     1621 ggccttcacg ccgaggaatt gggtgcttca gctcgctatt gatgacgctg agcgaggtga
     1681 ttggaccaag gcagaagcgt tggctacaag gctgatgcgg ccgttcgaac gcctagacga
     1741 agacgaagac gcatggtggt ccggaccgcg accagattgg gccttgagcc ggccgggttg
     1801 ttcgatgctt tcctgctcta gttaattgca tcaaaatcga ttggagtcag tggtgtcctg
     1861 cctagtgcgg cagtagctgt ttggagaagt gcttcttcta gccgatttcg gtcaattaaa
     1921 cgcccttcaa ggtcatgctt gtatcccaat gaatgcaagg atgtggtcag acctgattca
     1981 aggccacacc catctagcgc ctctacacgt ccggattcag tatcgatgtt gatggctagg
     2041 ccgtgcctac ttacccattt caggaatgaa aggccgatgc tgcatatctt gcgcccgttt
     2101 acccacaccc cttgcattct gtcgtcatgt actccctcga taccaatgac ttgcaaagaa
     2161 gcaatcatcc attgctctaa acgatcaatg acgcctggga ccgattgctc gtctccttcc
     2221 catcgtatga ttggatacac tacaagttgg ccaggtccgt ggtaagttat ccctcctcca
     2281 cgatctacgt ccagagtctc atatccaagt ggtacgatta cgccgtctcg acgtgctttt
     2341 ggaccaactg tgacgatttc tggatgttcg gtgaacaaga ttgtatctgg aatttcatca
     2401 gcgattcgtg cggtttgtag gtctcgcatt atgccattca tttgagggtg cgatatcgct
     2461 tcagtccgta gtatacggag cggacgcata gcgttgcatc gcggctagtg gcatgaacac
     2521 tttgtcagga gatgtgtatt gcatgaccaa gtgtcttgag cactccttca tggaaggatt
     2581 cagtcatggt agggtgagca tgcacagtcg ctgcgatatc ttcgagcaca gcacccattt
     2641 ctagggcaag tacgaattca ccagataact ctgcgacatg gctaccaacg gcttggatgc
     2701 cgagtattac gtgatccgat tctcttgcta ctacgcgcac aaacccattg gtcttctctg
     2761 cttcaagggt aagggcccgg ccgttggcgg caagagggaa cttcccagtg attattttct
     2821 ctcctgcctc ctcagcctct gaaggagtga gtccaacgca taccacttca ggttctgtga
     2881 atacaattgc aggtattgcg accttgtccc agttacggtc atgtcctgcg attatctctg
     2941 ctaccatctc accttgagcg ctagcacgat gggctagcat tgggtctcca gttacatccc
     3001 caatagcata tactcctggc atattcgttc ggcagccatc atcgattgcg atgaaacgcc
     3061 ctgaatcatc catctttatg cccatctcct caaggcccca attctttgta tttgggcgcc
     3121 gccctactgt aacgagcacc ttgtctacat cgattgattg gctgatatcc tcggagtcct
     3181 tccaacgaag tgtaactcca tcttcagaaa catcagcccc ttgtgccata cagccagtat
     3241 gtacctttac tccatgcttc ttgagccaaa tctctagagg gcgtcgaagt tctttgtcga
     3301 agattgcaag aattgagtct agcccctcga ttatagtgac ttctgaacca agacgtgcta
     3361 gtgcgcaacc gagttcaagt ccgatgtaac ctccacctac aattgcaact ttttctggaa
     3421 gttcgtccag atctaatgca ccagtagatg agcaaacccg atcttcatcg aatggcatga
     3481 atgggagttc aattggggat gatccagtag cgaggattac attctcggct tcaattcgaa
     3541 tgttaccatc agctgtttcg actttgcagg ttttcgcatc cacgaaagtt gcccatccgt
     3601 gaattaaatc ggcacctgct gctttcagca aaccttctac tccttggttc aaacgttgca
     3661 cgatagagtc cttccaaccg actaatgctt tcatgtcaag ttcaggtgaa cttgcattaa
     3721 ttcccatatg tcctccatct tgggcgtgct gggataaggc ctcaaatcgt tcagaagcat
     3781 ggataatcgc cttcgatgga atacatcccc ggattaggca agttccccct gcacggtccc
     3841 cttctacgat gattgtctgg agaccaagtt gtgctgcacg gattgctgca acatacccac
     3901 cagggcctgc gccaaccacg agtacctgac aagtgcgatt tttggccata atgaaacctc
     3961 acatgaagat ggttgcaggg tattcaagca tcctctttag atgctggata agtgccgctc
     4021 cgtccgctcc atcaaccaca cgatggtcga aggatgatga taggttcatc acgcggcgaa
     4081 tttcgattcg accgttgtat actaatgggc gttcattggc cttgtggact cctagtatgg
     4141 atacctctgg cttgttgatg attggtgttg cccccaatcc cccgtcgcgc cctaggcttg
     4201 tgatagtgaa cgtggaacca gaaaggtcct caagggctgc agatccggat ctggctgcac
     4261 ctgatactcg ttgcatttcg gcagccgcgg tccagacgtc cattgattct acatgcttga
     4321 cgactgggac gtaaagtcca cgatccgttt gcgttgcaat cccaagatga actgctccat
     4381 gtcgtgttac gatgttagcc tcgtcatcgt agtgtgcatt acactctgga tgatctggca
     4441 taattttgga tagagcgagc atgatgaacg gtaagtaggt gagtttgggc tggtcatctg
     4501 ccttggtagc gttgaggtgc tgccttaggg cttcaagctc ggttacatcc acttcttcga
     4561 aataagagaa atgaggtata ctgcgcttgg attcagccat attctcagca atctttcggc
     4621 gtagtccaat gactggtact tcctcggttg aggtacgctt tactccacga ggaacggcag
     4681 cgggtgaaga tgaggtcgcc ggaattggtg cacttacacc cgcgatttga gcatcgatat
     4741 cagcgtgggt aatacgtcca gaaggcccac ccccagcgac atcacgtagg tcaattccgg
     4801 cttgccttgc tctctgtcga actgcagggc tagccagagg tttcccactt gcacctgtac
     4861 tcgcttgttt aggtgcatgt gttgctggag ccggagtagg tgttggagcc gaagaaggaa
     4921 ctggtttagg tgcaggcttc acgggctctg gtgtagcctc tggtttaggt gcggaaccag
     4981 ccgaattccc ttcgccttct acttcgaata tgatgcatac ttggccaacg gggatgatgt
     5041 ctccaggtga tccggttgca gatgtgatgg tcccatctac tgggcttgga atttctacgg
     5101 atgctttgtc ggtcatgacc tctaacaagg ggtcgtcctc tcggacagta tcgccaactt
     5161 tgacgtgcca agtgacaatc tcgccctcga cgactccttc gccgatgtct ggtaggcgga
     5221 attcgtaggt gcccatactc aatcctcctg tgtgg
//
LOCUS       DUKB01000088           10849 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_59950, whole genome shotgun sequence.
ACCESSION   DUKB01000088 DUKB01000000
VERSION     DUKB01000088.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10849)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10849)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10849
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_59950"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>211)
                     /locus_tag="HA345_03030"
     CDS             complement(<1..>211)
                     /locus_tag="HA345_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84363.1"
                     /translation="WHLAAFFTVAIRQQMRAFASENNREPTKDEAKEIRARTLSTVRG
                     TVQADQLKESMGQNTLVLNLDTALK"
     assembly_gap    212..518
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<519..2600)
                     /locus_tag="HA345_03035"
     CDS             complement(<519..2600)
                     /locus_tag="HA345_03035"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013781.1,HMM:NF014375.1,HMM:NF015279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
                     /protein_id="HIH84364.1"
                     /translation="MVSTDEGASGKDAIRASDGKMPLRIVTAAAIFDGHDAAIGIFRR
                     IFQSRGCEVIHLGHDRGADEVARAAIQEDAHAVAITSYQGGAVEMFTHTKQILDAAGF
                     EHVFLCGGGGGTILPQEIRHLRDEGIARIYSPDDGRSMGLTGMVENAMRTAAEIDLLD
                     DSRYAELSEPINASDHGAVAKLLTLAENGESELYDSVLESVRSRPKGEECPIIGLTGT
                     GGAGKSSLTDELMLRIQRDNPGLRIALLATDPTRKRTGGALLGDRIRMNSLANNHLFM
                     RSFASRDSGRELADCIGRAIETCQAVGFDLIVCETSGIGQGDDAITEVADVSIYVTTR
                     EYGAPSQLEKLAALDFADLVVLNKFDRAGAEDAFAEIRKQVKRNHEVWDATDESLPVI
                     PTIASQFSDAGVDLLWKRLATLLNDRIGTTLTAAEPLLSEDGLPSRNAPIPSERQGYL
                     AEVAASIRNYHQDAENIADNIRLVQQLEAAAKRMEEGGKNAASNDLKNEANDIRKEVP
                     DEAWNALDEFDSYASAYRSGQASYTVRGREIPVETTTRTLSGLDLPKVALPDTKDRGD
                     LYRWIAKENRPGTFPFTAGVFPFKRRDELPVRMFAGEGSAERTNKRFHFLCTDQPFNR
                     LSTAFDSPSLYGRDPDERLDIFGKVCESGVSISTVDEMDRLFEGFDLCDPNTSVSMTI
                     NGNYWWHLAAFF"
     gene            2745..3401
                     /locus_tag="HA345_03040"
     CDS             2745..3401
                     /locus_tag="HA345_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84365.1"
                     /translation="MVGSMLGLGGVIDMVETFAQEVALALLVGGVICAFFGFRILAWL
                     IGLGIGGAVSLTVYGAAGAMESAPVAGDEMLLLAGVVGLIAGALVFRFVKRIHILVSG
                     WIGFFATMMVMTVIEPYYPTELLMKTAISYVGFFAGVVMLKKQSGSIGFLASSGIGGV
                     AIVMGSSVLIFGASTPLTLDFVDLTNRIILFTVMAVGCYFQIYWTTRENAKSDLLYDI
                     "
     gene            complement(3405..4016)
                     /locus_tag="HA345_03045"
     CDS             complement(3405..4016)
                     /locus_tag="HA345_03045"
                     /inference="COORDINATES: protein motif:HMM:NF013933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HIH84366.1"
                     /translation="MTPEQWLGLATVCTLGAMSPGPSLAFVMRNTMAGGRRVGLITAI
                     GHGIGIGLYAFAFVALLAGLLAAMPSLESGLRWTGIALLITFGSLLMRSSFNTKTELV
                     VSEPDVMERNPFVAGFAIAFFNPKIAAWMVAVYSQFVEVDSSLLTMAGMGGLAFAIDA
                     TWYAVVAVLLSGTLATSLQNHAQTVDRIVGVLLILSGILLIII"
     gene            complement(4032..5945)
                     /locus_tag="HA345_03050"
     CDS             complement(4032..5945)
                     /locus_tag="HA345_03050"
                     /inference="COORDINATES: protein motif:HMM:NF012711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HIH84367.1"
                     /translation="MWNPPPEALKALPEDRDWSGPSDQYGDPKTLYDMVRKSVDMWGA
                     DTVQCTYIPGEGLERVPITRGQFHDNVQALAAGMRAAGVKEDDRVLQIVDTSPQFAMI
                     FYAANMLGAAASAVYTNMKMKETSHCYNLATPSILFVASAEILANFSAAKGDAAWPAS
                     GAVLLDNEIPDEIPEGLKVQTWMDFIQSGRAAEPVNDPCMDPHKLASLIFTSGTSGFP
                     KAVMLSNWNVLHNVLAIQGRAPLWPGRRTACFLPFAHSLAQAGDMSAMIYFGVEVHYV
                     SDLLNLVNEVGEIRPHIMLCVPRVLNRFHSRILAGIEEGSGIKKKLAKSALATAKKRT
                     LAAPTEMVAVPPKGLKDKILTKLAITKIRERLGGELDLMISGGAPLDPEIALFINCLG
                     ITVLEGYGLSETAPLVSLNGWQDDYASMSGTVGRVIPGVEVLIDQDAWDDPESEDGEI
                     LVRGPNVMLGYWNNIEATNEVIMDDGHRTFRTGDLGRLIDGFVKITGRVKEQFKLQNG
                     KYVAPSPLEEQLKLSPLIEQASVDGRGKVGTYVIIQPNENAMMAALTSEGMQTSANFE
                     DTCAMENVNSWMLQRLSDEVMTPQNWKGYEKPRTIIIDHREWTTEDVLTPKMSVKRRV
                     LEKRFADRIAQIP"
     gene            6067..8106
                     /locus_tag="HA345_03055"
     CDS             6067..8106
                     /locus_tag="HA345_03055"
                     /inference="COORDINATES: protein motif:HMM:NF025600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHYH protein"
                     /protein_id="HIH84368.1"
                     /translation="MKARILPILLSALIFAAPLSGCIFTNDTPGEIISEDSVTECPDG
                     TELAPNSDVDCIPIAPIVIDSDDDAVDSSGNSTTEAEGNETTSANETQDSTNDTEQET
                     APLPLAEQCLDSHQNLAMHIHPYLDITVRDIQVVIPADMGIDTTACSNKMHLLHTHDQ
                     TGKLHIETYEEMTVNLTLFFEVWNISEVTNHELHPLFIDPANVSISINGVIQNVDWHL
                     IALLDGDQVAIEFDDAIPDTDGDGVNDQQDICPGHDDHIDADEDGIPDGCDDDDDGDG
                     VSDDADLCPGYDDTMDSDSDGIPDGCDSTDDSGYDASDLALFWMDKFLCQNGTGTGID
                     DYNTTGDDNHVCEVTVATDDNNVTITMNGIPNHDLESGPGCCATAQSYTLTIPREPVN
                     DTTGGHSSTNCPSAGGNYQCAADRGSIAYGMNGVPFFGPEDGPGGDAVAYHHGEYEED
                     RQQIWLGIGYGHSAGGTYHYHADANLMHWHPNETANEGWLDYSFPSSLDSQVASPVIG
                     VAFDGYPIYGIYGDDGNGLITEMKSSYQLKAGETGYNGIDDYEYVAGLGDLDVCNGHF
                     GPTPDFPQGIYHYHSTIENGMGEMGFPYFLICYHGEVPGAAGSGGGGDDPCAGYGETW
                     GPGIGPPPAGCGGGGGQGTQSAETMMLTSTLDWSSILLGLILLTMGINAFRRYRR"
     gene            complement(8103..8837)
                     /locus_tag="HA345_03060"
     CDS             complement(8103..8837)
                     /locus_tag="HA345_03060"
                     /inference="COORDINATES: protein motif:HMM:NF015146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HIH84369.1"
                     /translation="MSVQHALLDAAKHLRDLTEQITPKLLEDCDNIDWIYNPLVYAWA
                     PHSEYIRRHGTQGAHTMLVGMNPGHGMGNTGVPFGCPKMVREVLGIVDLPVEQPPLIH
                     PKRPIYGLEHPKPEVSGTRIWSALSEVFGTGNAPGKHVYIVNHCPLWMFNEKGTNITP
                     DKLRGPTADTLRSVCDEHLRDVANILDSKVVIGVGRYAQRRVEAIFQSSEIEVRNVPH
                     PSPANPFANRNGGADWRVAFRTVLGI"
     gene            complement(8834..10588)
                     /locus_tag="HA345_03065"
     CDS             complement(8834..10588)
                     /locus_tag="HA345_03065"
                     /inference="COORDINATES: protein motif:HMM:NF015983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HIH84370.1"
                     /translation="MTWLVIDGYEDEPAAFGVPPYIGFHVRYVCGVLSSRGIDYEYIT
                     IDQWRLGIRPDGLANGRIEGIVLIAGAVVPGKYLRGTPISLKETDHLIRSLPRKTPFL
                     AGGWAIRGWKQQGWGPLRRNLFLAVQDVDATLENFLQTGEWAHRRRTADQWTQWAQEG
                     AKSRAVTDHPDIGNEEQPGPLTYEVEVYQGCVRYKRGCRFCIEPKKGVPIWRTPEDVI
                     EEVSIAVDQGVRHVRLGGMTDVYTYMAEGVVDLEYPIPDPEPIARLLYGLREDDRIET
                     LHVDNGNPSIIAENLEPSTEITKTLVETMSDGAVLSFGLESADPTVHEANWLNCDSQQ
                     LKTAIELINRYGRERGPRGLPKLLPGLNFIAGLKGETDTTYDLNRNLLDDIRKSGLWV
                     RRINIRQVEGRGFQTVQEKPFKQFKEWVRNEIDAPLLKEMFPLGQRLNNVYWEAHEGR
                     TRLPRHVQDPSHRDSAIIGRPGLTMGRQIGAYPILIGVNYQIPLESMSDIIITGHGAR
                     SITGIETNLDPNLMTERQFSCIPGISDRGASRIVANRAERKRNSPEMTPFDSLNDVFD
                     SIDMEEPELAAKIMKVDV"
     gene            complement(10642..>10849)
                     /locus_tag="HA345_03070"
     CDS             complement(10642..>10849)
                     /locus_tag="HA345_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002770086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HIH84371.1"
                     /translation="EGNPRGFGFVVFADPDEGRAAIKALNGTELGGRKLRFEESNSDS
                     RGGRRGRGGRDHGNRGGRDRRNRN"
BASE COUNT         2420 a         2567 c         2681 g         2874 t
ORIGIN      
        1 aacttcaacg cagtatcaag attcagaaca agcgtattct gccccattga ctccttgagt
       61 tggtctgctt ggactgtacc tcggacggtg gagagtgttc ttgcacgaat ttctttggct
      121 tcatcttttg tcggctctcg attattctcc gaggcgaatg cacgcatctg ttgacggatt
      181 gcgacagtga agaaggcggc aaggtgccac cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnga agaaggcggc aaggtgccac
      541 caatagttgc cgttgattgt cattgagacg ctagtgtttg ggtcgcataa atcgaatcct
      601 tcgaagagtc gatccatttc atctactgtg ctgatgctta ctcctgattc gcagaccttg
      661 ccgaaaatat ccagtcgttc atcggggtcg cgtccataga gtgatggaga gtcgaaggca
      721 gtagatagtc gattgaaagg ctgatcggta cagaggaaat ggaagcgctt gttcgtcctt
      781 tcagcgctac cttctcctgc gaacattcga acaggaagtt cgtcacgtcg cttgaatggg
      841 aagacaccgg ctgtgaatgg aaatgtccct gggcggttct cctttgcaat ccatcgataa
      901 aggtctcctc gatctttggt atcgggtaga gcaactttcg gtaaatcaag tcctgaaagc
      961 gtgcgtgttg tcgtttccac cggaatctcg cgtcctctga cagtgtagga tgcttgccct
     1021 gagcggtatg ctgatgcata ggaatcgaac tcgtctagtg cgttccaagc ctcgtcaggg
     1081 acctccttcc ggatgtcgtt tgcctcattc ttaaggtcgt tcgatgcggc gtttttcccg
     1141 ccctcttcca tcctcttcgc ggctgcttcc aactgttgca ctagtcggat attgtctgct
     1201 atgttttctg catcttggtg gtagttacgg atggaagctg cgacttcagc taagtagcct
     1261 tgacgctctg aaggtattgg cgcgtttcga gaggggaggc catcctcgct gagaagaggc
     1321 tcggctgcgg tgagcgtagt tcctatgcgg tcattgagta aggtagcgag tctcttccag
     1381 aggaggtcca ctccagcatc agaaaattgg gatgcaatag tggggattac gggtagactt
     1441 tcgtcagtcg catcccaaac ctcatgattc cgtttcactt gcttgcggat ttcagcaaat
     1501 gcatcctcag ctccagctct gtcgaacttg tttaggacga cgagatcggc aaagtccaag
     1561 gcagcgagtt tctcaagttg cgatggcgca ccatattcac gtgtagtgac ataaatcgaa
     1621 acatctgcga cttcagtaat tgcatcgtca ccttgcccta ttccactcgt ctcacaaacg
     1681 atgaggtcga atccaactgc ttgacaagtt tcgatcgcac gaccaataca atccgcgagt
     1741 tcacggccac tatcgcgact cgcaaaagat cgcatgaata ggtgattgtt tgcgagtgaa
     1801 ttcatgcgaa tacggtcacc gagtaaggct cctcccgttc gtttccgagt tggatcggta
     1861 gcgagcagcg cgatgcggag tccaggatta tctcgctgga tgcggagcat gagttcgtca
     1921 gttaggctgg attttcccgc gcctccagtc ccagttaggc caatgattgg gcactcctct
     1981 cctttgggtc gacttctcac ggattctagc acagagtcgt agagttcact ttctccattc
     2041 tcagctaggg tcagtagttt cgcaactgcg ccatgatctg atgcgtttat gggttcactc
     2101 aattctgcat aacgtgaatc atcgagaagg tcaatttctg ctgcagttcg catggcgttt
     2161 tcgaccatac cggtgaggcc catgcttcgg ccgtcgtcag gtgagtagat tcgagcgatt
     2221 ccctcgtcgc gtaggtggcg aatttcttgt gggaggatgg tgcccccacc tccgccacag
     2281 aggaacacat gctcgaatcc agcagcatcg aggatttgct tcgtatgggt gaacatctct
     2341 acggcgccgc cttggtacga tgtgattgcg acagcgtggg cgtcctcttg gattgccgct
     2401 cgtgcgacct catccgctcc tctgtcgtgt ccaagatgga tgacctcgca tccacgcgat
     2461 tggaatattc gccgaaagat cccaatggcg gcatcatggc cgtcaaatat tgctgcagca
     2521 gtgactatgc gcagtggcat cttgccatca gatgcgcgaa tggcatcttt gccagaggca
     2581 ccctcatcgg tgctgaccat gttctttccg ataatgcgct ctgcaatgag gtcatcgctt
     2641 acattacaac tctcatactc acagaatgca atcatctagg agatactttg cagtgatgaa
     2701 aatccgccga agcggctatg acctttctag tgctaattct gtacatggtc gggtccatgc
     2761 tgggtttggg cggcgttatc gacatggtcg agaccttcgc tcaggaggtt gctcttgcct
     2821 tgttggtagg tggggtaatt tgcgcattct tcggtttccg catccttgca tggctaatcg
     2881 gtctgggaat cggtggagca gtcagtctca ccgtctatgg ggccgcaggt gcaatggaat
     2941 cggccccagt tgccggcgat gagatgcttc tccttgctgg ggtagtcggc ctaatcgctg
     3001 gagcattagt attcagattc gtcaaacgta tccatatcct agtcagcgga tggattggat
     3061 ttttcgctac tatgatggtt atgactgtga ttgagccata ttatcctaca gaacttttga
     3121 tgaagacagc gatttcctat gtgggcttct ttgcaggtgt ggttatgctc aagaagcagt
     3181 ctggttcgat tggtttcctt gcatcctctg gaatcggggg cgtcgcgatc gtgatgggtt
     3241 caagcgtgct tatattcgga gcgagcactc ctcttacact ggattttgtt gatttaacaa
     3301 accgtatcat cctcttcacg gtgatggcag taggctgtta tttccagatt tattggacca
     3361 cgagggagaa tgccaagtcg gatcttcttt acgatatctg actctcagat tatgattaga
     3421 agtatgccac ttaggattaa cagaactcct acaatccgat cgacggtttg ggcatggttc
     3481 tgcaacgacg ttgctaatgt accactgagc agaacggcga cgacagcata ccatgtagca
     3541 tcgattgcga atgcaagtcc acccatccct gccatagtga gaagcgatga gtccacttct
     3601 acgaactgac tgtagactgc aaccatccat gcagcgattt tgggattgaa gaaggcaatt
     3661 gcaaatcctg caacaaatgg atttcgttcc atcacatcag gttcggatac aactagctct
     3721 gttttggtat tgaaagatga tctcattaga aggctaccaa aagtaatcag cagagcgatg
     3781 ccagtccatc gtagtccaga ctcgagagaa ggcatggctg caaggagtcc cgcaagtagt
     3841 gctacaaatg caaatgcgta gagtccaatt cctattccat gtccaatggc agtgatgagg
     3901 ccgacacgcc gccctccggc catggtgttc ctcatcacga aagcgagtga aggtcccggc
     3961 gacatcgctc ccaatgtgca gactgtagcc agaccgagcc actgctcagg cgtcatgaag
     4021 gtgcgccgcc atcaagggat ttgtgcgata cggtccgcaa agcgcttttc aagaacacga
     4081 cgcttgaccg acatcttcgg tgtgaggacg tcttcagtcg tccattcacg atgatcgata
     4141 ataatcgtcc ttggcttctc gtaacctttc cagttttgag gtgtcatgac ctcatcagag
     4201 agcctttgca gcatccacga gttgacattt tccatagcac aggtgtcttc gaagttggca
     4261 gatgtctgca ttccctctga tgtgagtgcg gccatcatcg cattttcatt aggttggata
     4321 atgacataag taccgacttt tcctcgtccg tcgacggagg cttgttcgat gagaggggat
     4381 agtttgagtt gctcttctag tggagacggg gcgacgtact taccgttctg aagtttgaac
     4441 tgctccttta cccggccagt aatcttgacg aatccatcga taaggcgtcc aagatctcca
     4501 gttcggaagg ttcgatgtcc atcatccatg atgacctcgt tagttgcctc aatattattc
     4561 cagtaaccaa gcataacatt gggtccgcgg acgagaatct ccccgtcctc agattcggga
     4621 tcgtcccaag catcctggtc aataaggact tcaacacctg ggattactcg gccaacagtt
     4681 ccggacatcg atgcatagtc gtcttgccat ccattcaagg acacaagtgg agcggtctcc
     4741 gacaatccgt agccttcgag tactgtgatg ccaaggcaat tgatgaacag agcaatctcg
     4801 ggatcaagtg gtgctccgcc actaatcatt agatctagtt cgccaccaag tcgttcacgg
     4861 attttggtaa tcgcaagttt ggtcagaatc ttgtctttca atcccttggg aggcactgca
     4921 accatttctg ttggcgcggc tagggtgcgc ttttttgcgg tagcaagagc ggacttagcg
     4981 agtttcttct tgattccaga gccttcttcg attcctgcca aaattcgact atggaatcgg
     5041 tttaggacac ggggtacaca gagcatgatg tgtgggcgaa tctctccaac ctcgttcact
     5101 aggtttagca aatcggatac atagtggacc tcgacgccaa agtaaatcat tgcactcata
     5161 tcaccggctt gagcgagaga gtgagcaaac ggtaggaagc atgcagtccg tcggccaggc
     5221 cagagagggg ctcgaccttg gattgctagg acgttatgca ggacgttcca gttggatagc
     5281 attactgcct ttggaaaacc actggttcct gaagtaaaaa tcaggcttgc aagcttgtga
     5341 gggtccatac aggggtcgtt aacgggttcc gctgctcggc cggactgaat gaaatccatc
     5401 catgtctgga ccttgagtcc ttctgggatt tcatcaggaa tttcgttgtc tagtaagacc
     5461 gctccagaag ctggccacgc agcgtcacct tttgcagcac tgaagttagc gagaatctct
     5521 gccgatgcaa cgaagaggat gctaggagtt gcaaggttgt agcaatggct ggtctccttc
     5581 atcttcatat tcgtgtaaac tgcagatgca gctgcaccta gcatatttgc agcgtagaaa
     5641 atcatggcaa actggggact tgtgtcgaca atctgtagga cgcgatcgtc ctccttgaca
     5701 ccagcagccc gcatgcctgc tgcgagagcc tgaacattat cgtgaaattg gccacgagta
     5761 attggaaccc gctcaagccc ttctccaggg atgtaggtgc attgtacggt atctgctccc
     5821 cacatgtcaa cggattttcg taccatgtca tagagggtct tagggtcgcc atattggtca
     5881 gatgggccac tccaatcacg gtcttcaggt agtgctttca gggcttcggg aggggggttc
     5941 cacattggta ttcctcaact caccaagttg ggtgtgacac atatacacac cggcggtatt
     6001 ttgcaatcgt tcatttggga cattaccgaa aggaattgat atacttccgt gggaaaagtc
     6061 cttgttatga aggcacgaat ccttccaatt ttgctttctg ccctcatatt tgctgcaccg
     6121 ttatccggct gtatctttac taatgatact cctggggaaa taatctcgga ggatagtgta
     6181 accgaatgcc cggacggaac cgaactggca cccaattctg atgtggattg cattccaatt
     6241 gccccaattg tcattgattc agacgatgat gcggttgatt ccagtggtaa ttctacaact
     6301 gaggctgagg ggaatgagac tacctctgcc aatgagacgc aggattcaac aaatgataca
     6361 gagcaggaaa ccgcacctct tcctctcgca gaacaatgtc tcgacagtca ccagaatctt
     6421 gcaatgcaca tccatcccta tctagacatc actgttcgcg atattcaggt tgtaattccg
     6481 gctgatatgg gcatcgatac tacagcctgt tcgaataaga tgcatctatt gcatactcat
     6541 gaccaaactg ggaaactgca tatcgaaaca tatgaggaga tgactgtcaa cctaactctg
     6601 ttctttgagg tatggaatat ttcagaagtt acgaaccatg agttgcatcc tcttttcatt
     6661 gatccggcta atgtctcaat ctcgattaac ggagtaatcc agaacgtgga ttggcacctc
     6721 attgcattgc ttgatggaga ccaagttgcc atcgaatttg acgatgctat acctgatact
     6781 gacggagatg gtgtcaacga tcaacaagac atttgtcccg gtcacgatga tcatatcgat
     6841 gccgatgagg atggaatacc tgacggctgt gatgatgatg atgatggtga tggagtgagt
     6901 gacgacgcag atctttgtcc aggttatgat gacactatgg attcagattc agatggcatc
     6961 cccgatggtt gcgattcaac tgacgacagc gggtatgacg cttctgatct cgccctattt
     7021 tggatggaca aattcctatg tcagaatggg actgggactg gaattgacga ttacaacacg
     7081 accggtgacg acaatcatgt ctgtgaggta actgtcgcga ctgatgacaa taatgtcaca
     7141 atcacaatga atggaatccc caatcatgat cttgaatcgg gaccaggttg ttgtgcaaca
     7201 gcgcaatcat acacgctcac gattcctcgt gagcctgtaa acgatactac tggaggccat
     7261 tcgtctacta attgcccttc agcaggtgga aactaccaat gtgcagctga tcgaggttca
     7321 attgcttatg gcatgaatgg agtgcccttc tttggtccag aagatggccc tggtggagat
     7381 gcagttgcat accaccatgg tgagtacgaa gaagatcgac agcagatttg gttaggaatc
     7441 gggtatggtc attctgcagg gggtacttat cattaccatg cagatgcaaa tctcatgcat
     7501 tggcatccta atgagaccgc taatgaggga tggttggatt attcattccc atcttcgtta
     7561 gattctcaag ttgcatctcc agtaattggt gttgcttttg atggctatcc aatttacgga
     7621 atttacggcg atgatggaaa tggtctgata acggagatga aatcctcata ccagttgaag
     7681 gccggagaaa caggttacaa tggaattgat gactatgagt acgttgctgg attgggtgat
     7741 ctcgatgtat gcaatggcca tttcgggccg actccagatt ttcctcaggg catctaccac
     7801 tatcattcaa caattgagaa tgggatggga gagatgggtt tcccatattt cctgatttgt
     7861 taccatggcg aagttccggg tgctgcaggt agtggcggag gtggagatga tccgtgtgca
     7921 ggctatggag agacatgggg tccaggaatc ggccctcctc cggcaggttg tggcggtggt
     7981 ggtggccaag gcactcagtc agccgagaca atgatgctta caagtacgct agattggagt
     8041 tcaatactac ttggcctcat tctattgacg atggggataa atgcattcag gcgttatcgt
     8101 cgttagattc ctaacacggt acggaaggca actctccagt ctgctccccc atttcgattt
     8161 gcaaatgggt ttgcagggct aggatgtggc acatttctaa cctcgatttc ggaactttgg
     8221 aagatggctt caacacgtct ctgcgcatat cttcctaccc ctatgacgac ctttgaatcg
     8281 agtatgttcg caacatctct gagatgttcg tcacagacgc tacgaagtgt atctgcagtt
     8341 ggacctcgta gtttgtcagg tgtgatgttg gtcccctttt cattaaacat ccagagtggg
     8401 cagtgattca caatatacac atgctttcca ggcgcattcc ctgtgccaaa gacctctgag
     8461 agcgcgctcc agatgcgagt acctgaaacc tcgggtttgg ggtgttcaag cccgtatatt
     8521 ggccgctttg gatggattag tggaggttgt tcgacaggaa ggtctacgat tccaaggact
     8581 tcccttacca tttttggaca tccgaatggg acccccgtgt tgcccatacc gtgccccgga
     8641 ttcattccta cgagcatagt atgtgctcct tgagtaccat ggcgacggat gtattcactg
     8701 tgtggcgccc atgcataaac caggggattg tagatccaat cgatattatc gcaatcctct
     8761 aacagtttag gtgtaatttg ttctgtgagg tcacgcagat gtttcgctgc atccaataag
     8821 gcatgctgaa cactcatacg tccaccttca tgattttcgc tgcgagttct ggttcttcca
     8881 tatcgatgct atcgaataca tcattcagcg aatcgaatgg agtcatctct ggtgagtttc
     8941 tctttcgttc cgctctgttt gctactattc gtgatgctcc acgatcactg atgcctggga
     9001 tgcagctaaa ttgccgttca gtcattagat tcgggtcgag atttgtctcg atgccagtga
     9061 tgcttcgtgc cccgtggcct gtgatgataa tgtcgctcat tgattcaagt ggaatctgat
     9121 agttcacgcc gattagaatt gggtaagcgc caatctgtct acccattgta agcccgggtc
     9181 ttccgattat cgcagaatca cggtggcttg ggtcttgcac atgcctgggc agtcttgttc
     9241 tcccctcgtg ggcttcccaa tacacattgt tcagacgttg gcctagtgga aacatttctt
     9301 tgaggagtgg tgcatcaatt tcgtttctca cccattcttt gaattgtttg aatggttttt
     9361 cctgaacggt ttggaatcct ctaccctcaa cctgccggat attgattcta cgcacccaca
     9421 ggcctgattt tctaatatca tcgaggagat ttcgatttag gtcatatgtt gtatcagtct
     9481 ctcctttcag gcctgcgata aagttcagtc ccgggagcag tttcggaagg ccgcgaggtc
     9541 cacgttctcg tccatatcga ttgatgagtt caatcgcagt cttgagttgt tgagaatcgc
     9601 agtttaacca gtttgcctca tggacggtgg ggtctgcgga ttcaagacca aaggagagta
     9661 cagccccatc cgacattgtt tccactagcg ttttcgtaat ctcagttgat ggttccaaat
     9721 tttcggcgat gatacttggg tttccgttgt caacgtgaag ggtctctatt cggtcatctt
     9781 ctcttaggcc gtagagtagc cgagcgattg gttcggggtc tggaattgga tattcaagat
     9841 caacgacacc ttcagccatg tatgtgtaca cgtcagtcat gccaccaagg cgaacatggc
     9901 ggacgccttg gtcgacagca atacttactt cttcaatgac atcttccggt gtccgccaga
     9961 taggtacccc cttctttggt tcgatacaga atcgacatcc gcgtttgtat cgaacacaac
    10021 cttggtacac ctctacctcg taggtcaatg gaccaggctg ttcttcatta ccgatatcag
    10081 ggtgatccgt tacggcccga ctcttcgcgc cctcttgtgc ccattgagtc cattggtcag
    10141 ctgtacggcg tcgatgtgcc cattcaccag tttgaaggaa attttccaaa gttgcatcga
    10201 catcttggac agcgaggaag aggttccttc gtaatgggcc ccaaccttgc tgcttccatc
    10261 cgcggattgc ccatcctccg gcgaggaaag gagtcttacg aggaagtgat cgaatcaagt
    10321 gatccgtctc cttgagggag ataggcgtac cacggagata ttttccaggg actacagctc
    10381 cagcgattag aacaatgcct tcaattcgcc cgtttgcgag gccgtcgggg cggattccca
    10441 atcgccactg gtctattgta atgtactcgt aatcgatacc ccttgaggat agaacaccac
    10501 agacgtagcg tacgtggaag ccaatgtagg gtggtacgcc gaaggcagcc ggctcatcct
    10561 catacccatc aatcacgagc caagtcatgt cattccccct ctcatgaggg tggctactac
    10621 ggcatttcat ccatcgctcg tttagtttcg atttcgccgg tctcttccgc cgcggtttcc
    10681 atggtcgcgg ccgcctctcc ctctccggcc acctctactg tcagagttgg attcttcaaa
    10741 gcggagcttt cggccaccga gttcagtacc gttgagtgcc ttgatggctg ctcgcccttc
    10801 atctggatct gcgaatacaa caaagccgaa tccgcgggga ttgccttcc
//
LOCUS       DUKB01000089            8487 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_289025, whole genome shotgun sequence.
ACCESSION   DUKB01000089 DUKB01000000
VERSION     DUKB01000089.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8487)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8487)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8487
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_289025"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            30..479
                     /locus_tag="HA345_03075"
     CDS             30..479
                     /locus_tag="HA345_03075"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HIH84372.1"
                     /translation="MAALSWSASAIAMKRGMTTAPEGETPMSPLRITVWSSITGLIFL
                     TPGFIWEGASNQWVIPSTEALAAILFLAILSTVVSYVWYAEGIRTIGAGPAALYVYLV
                     PLFGILSGWILLDEKLGWSLLLAFVLIVGGVAFAQSAKGDVQAITVE"
     gene            481..1368
                     /locus_tag="HA345_03080"
     CDS             481..1368
                     /locus_tag="HA345_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013473447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HIH84373.1"
                     /translation="MDIRTVAVIGAGTMGAGIAQICAQTGWKTHLHDAFPEGLERGME
                     RIHAFWDKGIARGKTTENQKSEWSANLHPTDSLEDAVCEADLVIEAVPEIMDLKRDIF
                     QRIDAAAPAHAILGSNTSGLPIGEIAEVTTRPQSVIGMHFFNPVPLMALLELIQHDGT
                     SDETIEAARSIAEHLDKTSILVRDVPGFATSRLGVVLGNEAIRMLADGVASASDIDTA
                     MRLGYRHPMGPLELTDLVGLDVRRDILNNLAKAFDDNRYLPHPLLNQLVENGELGKKT
                     GQGIYDWSNGEKSDRDHNL"
     gene            1378..1668
                     /locus_tag="HA345_03085"
     CDS             1378..1668
                     /locus_tag="HA345_03085"
                     /inference="COORDINATES: protein motif:HMM:NF016109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84374.1"
                     /translation="MLSDVMIEAIGAMAGLLGVIAWLPQLHHVMVQRLHDGISMPTLL
                     AICIALVLWIIYGFLINSLAIIGSNIAAGTCVALVALRVTQLRRIEASAESF"
     gene            complement(1660..2457)
                     /locus_tag="HA345_03090"
     CDS             complement(1660..2457)
                     /locus_tag="HA345_03090"
                     /inference="COORDINATES: protein motif:HMM:NF012596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HIH84375.1"
                     /translation="MTVGVVTQGQTAVVTLSEEASNNAFDAVSMAAISAELTRLMDDP
                     DIRSIVITGSGRVFCAGADIQSFKYAIEDGSAADLVATLTGILHPLLVRMRGDPTVMV
                     AAMNGAAAGGGLGLALACDVRIASTNARMASAFFRLGLSPDGGTTWLLPRLVGIQNTR
                     RFLFEDQTWSAEEALDLGAVDEVVEADELIPRAIRIAMDWGRWSDQSKRSTKQLLDSQ
                     FSTFFETQLEFERMLITESSRSPDFVEGVESFLEKRDPIFYSSDESE"
     gene            2528..3952
                     /locus_tag="HA345_03095"
     CDS             2528..3952
                     /locus_tag="HA345_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014617107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HIH84376.1"
                     /translation="MQREELYIDGAWIAPQGDGTIEVINPTTEQVIGSVPAGSSADVD
                     LAVAAAKRAFPEWANSSIETRMSALNDLSLALKELTEELAQTITAEVGTPIGYSRMAM
                     VGTPRVVARSYAKMLESYEWEHEVRNSIITKEPVGVCAFITPWNFPLHQIVGKVAPAL
                     AAGCTMVLKPSKEAPLNAFLLADILHDIGLPPGVFNLVSGHGSEVGEILSGHPDVDMV
                     SFTGSTGAGIRVSQAAAPTVKRVTLELGGKSANVILDDADVIRAAKSSIGACYQNSGQ
                     TCSALTRLIIPVAHKEEILELVKKRVEGYTPGDPLAENTRCGPMVSAKQQTSVRSYIQ
                     SAIDQGATLITGGTGMPDGIETGFFVQPTAFADVTPEMTIWKEEVFGPVMTITTYESE
                     EEALALANDSIYGLSGGVWSGDSERAVAFAKGMRTGQVSINGGPFNVSAPFGGYKQSG
                     NGRELGVEGLDEFLEIKAIQRPIE"
     gene            3973..4128
                     /locus_tag="HA345_03100"
     CDS             3973..4128
                     /locus_tag="HA345_03100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84377.1"
                     /translation="MTEIPFWRIFFVILGIIISFSGLILWNIPLNESVDEDGSVNLYS
                     TDSGWNF"
     gene            complement(4294..5289)
                     /locus_tag="HA345_03105"
     CDS             complement(4294..5289)
                     /locus_tag="HA345_03105"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013348.1,HMM:TIGR00269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HIH84378.1"
                     /translation="MPSAFEVTPCSRCSRDSILHQIYSGQHLCGSHLVELIHKRVSKT
                     LRRQLPLPKNALSTLGRPYRVLVAVSGGKDSALMLHLLHRILGKRRDVEIIAGVVDEG
                     IEGYRAPSVDCAQSLCDHLGIRLERISYPDLSFPKMDALVQSLPLVGESNDEVNGMMP
                     CSFCGVFRRQGLNALAERVGADVMALGHNLDDVAQSILMNLQKGEVDRTIRLAPHTEQ
                     KIDGLTPRIVPLRWIPEQEIHAAAIQLDLPIHHGNCPHAGGALRQRSRLIVAEIERDV
                     PGSRHGLLQSMDRIKELARESNLSNNESIRSCDTCGQPTNRPICQACTMREWFMD"
     gene            5530..5856
                     /locus_tag="HA345_03110"
     CDS             5530..5856
                     /locus_tag="HA345_03110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84379.1"
                     /translation="MIENVVRAYTHLPGVVESWMEKLDGTMITPSKDGRSSIPSWTTA
                     ERLARESGIGQLQEWWIESDQGAVIASRTGDDALLWMKTDSARRLGRCAHEVRRTRGD
                     LANLLR"
     gene            5861..>8487
                     /locus_tag="HA345_03115"
     CDS             5861..>8487
                     /locus_tag="HA345_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84380.1"
                     /translation="MFDLPHGDPIDRTFDGSALNEVVDFECGIISSYKPKSRSPCAHR
                     IVAGGHIVGWRADAEENKHYLGGHAAKARLVELEDAHELRHKAYTLLLEEVRSLIDGI
                     PECLADPALMGTLGLAGRRLPAATHDWPLVVDVLESETGVIAALAFEDGVLIHSSGET
                     PADPDALSADLDAQMRGMDALTQLMGASPAPWYRQAFDEHEMTVARDGTAGLAIWTTG
                     GADPMTLLMNAAGMIEPAEYDADAEILAPSDGFIVREGKGGVDALISMLSTAKTEEIT
                     GHLKSEGKGEPVSILLIDGLPSGIHSTVEELAASIRNISSPSADLQLHRLERSARLTL
                     GRGNIDGFTLEAMCHSIATVRTRSESRRDLLTDRLDRLYRFEMGMDAVASSKSQWRLL
                     DTGGRAMAKILPSSSAGKVLQPEDRQVLDRIRRLEDDKIGLERDRGRLERMLEEEHTQ
                     RTQSDETLAQKTALLDEATTRARSLNDELDQARLVVQRAGESSEADRTRADSLAKRVA
                     ELEHLVERKASEIASAIGESKKREELSVELEEIMKKEAETRATLNDAESRLDEVRTAL
                     NEDERVQRVLSEQVASLRDRHRLAEAETKEAEVRMRNHRAEVAALEGDLHTLRRQIDE
                     DRGRTNDLERRQSLLQTELKELMSERRTLMRELGDLDARKAQAEAELREMIADAEELT
                     EAHEQALVDIAEADRIRARLQEEPLARALLDDEGLRALEPVLERMEGARNRGLSMVLL
                     DRAVERGLAVIQHTVDEVAATPRHLLSTEVMDLLEQQAPETASAVRGLTRWSVQQRLH
                     HMLGQIVNDVVLDLEDIIRGYEEAATTIGQMRDVLRSLNDLGMPGSRIEAIERMLTRP
                     ETLPRIAAETQALIHSALD"
BASE COUNT         2270 a         2090 c         2151 g         1976 t
ORIGIN      
        1 ctcgaattat gggtgatttg ttcataatgt tggccgcact gtcatggtca gcatctgcaa
       61 ttgcaatgaa gcgaggtatg actaccgcac cagaaggtga aacaccaatg tcaccgctgc
      121 gcatcaccgt ctggtcatcg ataactggtc tcatatttct gacaccagga ttcatctggg
      181 aaggtgcatc aaaccaatgg gtcataccat ctacagaagc attggcagca attctcttcc
      241 ttgccattct atctactgtt gtatcctatg tctggtatgc ggaaggtatc cggacaatcg
      301 gagcaggacc tgccgcactc tacgtctatc tggttccgtt gtttggaatt ctgagtggtt
      361 ggatcttatt agatgagaag ttaggatgga gtctcctact tgcctttgtt ctaatcgtcg
      421 gaggtgttgc attcgctcag agcgcgaagg gtgatgtaca ggcaataacc gtcgaatgat
      481 atggacatac gaaccgtcgc cgtgattgga gccgggacga tgggggcagg tatcgcccaa
      541 atctgtgcac aaaccggttg gaagacacac ctccatgatg cgtttcctga aggactcgaa
      601 cgaggaatgg aacgtataca tgcattctgg gacaagggca tcgccagggg caagaccacc
      661 gaaaatcaga agtcagaatg gagtgcaaat cttcacccta cagattctct tgaggatgct
      721 gtatgcgaag ccgatctagt tatcgaagca gttccagaga ttatggatct aaagcgagat
      781 attttccaac ggattgatgc tgcagcacct gcacatgcaa ttcttggaag caatacctca
      841 ggtctcccca tcggagaaat tgcagaagta accacaaggc cacaaagtgt catcggcatg
      901 catttcttca atccggttcc gttgatggca ctcctcgaac tcatccaaca tgatggcacg
      961 agtgatgaga ccatcgaagc ggctcgaagt atcgctgaac acctagacaa gacctctatc
     1021 ctagtccgag atgtgccagg gttcgccacg agtcgactcg gtgtcgtgct cggaaatgaa
     1081 gcgattcgta tgctagctga cggcgtcgct tctgccagcg acattgacac ggcgatgcga
     1141 ttaggataca ggcatccgat gggacccttg gaactaaccg atcttgtagg cctcgatgtt
     1201 cgcagagata tcctcaacaa ccttgcaaag gccttcgatg ataatcgata tctcccgcat
     1261 ccactactca accaactggt tgaaaatggt gaactcggaa agaaaaccgg acaaggcatc
     1321 tatgattggt ctaatggtga gaagagtgat cgtgaccaca atctctgagg tgacgcagtg
     1381 ctctcagatg tcatgattga agcaatcggt gctatggccg gcttactcgg tgtcatcgct
     1441 tggcttccac aactccacca cgtgatggtc caacggcttc atgacggcat ctcaatgcca
     1501 accctgttag ctatctgcat cgccttagtc ctatggataa tctacggatt tctaattaat
     1561 tccctcgcaa ttatcggatc gaacattgct gcagggacat gtgtcgcact agtcgcatta
     1621 cgagttacac agcttagacg gattgaggcc tctgctgaat cattctgatt catcagaaga
     1681 atagaatatt ggatcgcgct tctcgaggaa agattcgaca ccttcgacaa agtcgggtga
     1741 acggcttgat tccgtaatga gcattcgttc aaattctaat tgagtctcaa agaaagtcga
     1801 gaattgagaa tccaacaact gctttgtaga cctctttgat tggtcagacc agcgacccca
     1861 atccatcgca atacgaatcg cacgagggat gagttcgtca gcctcaacaa cctcatcaac
     1921 tgcacctaaa tccaaagctt cctctgcact ccaggtctga tcttcaaaga gaaaacgacg
     1981 agtattctgg atacccacaa gacgtggaag aagccacgta gttccaccat ctggggagag
     2041 tccaagacgg aagaatgcag aggccatacg tgcgttagta gatgcgatgc ggacatcaca
     2101 agctaatgca agcccgagac ctcctccagc agcagcccca ttcatggctg ccaccataac
     2161 agtaggatcg ccacgcattc gaacaaggag tggatgaagg ataccggtca gggtagcaac
     2221 aaggtccgca gcagagccat cctcgattgc atacttgaac gactggatgt cagcaccagc
     2281 acaaaacaca cgaccagacc cggtaatcac gatggatctg atgtcaggat catccataag
     2341 acgtgtaagt tcggccgata ttgccgccat tgagaccgca tcgaaggcgt tgttagaggc
     2401 ttcttctgac aatgtcacga ctgcagtttg accttgagtc accacgccga cagtcatact
     2461 tcgcggtgga ggtctacgtt attgaagtcc atgaaggtca taagatacgt attcctcagg
     2521 aagaccaatg caacgcgaag aactgtacat cgatggagca tggattgccc ctcagggtga
     2581 tggaacgatt gaggttatca accccacaac cgagcaggtc atcggttctg tccccgctgg
     2641 atcctcagca gatgttgatc tcgcagttgc cgcagcgaaa cgtgccttcc cggaatgggc
     2701 taacagtagc atcgaaaccc gtatgtctgc tctcaacgac ctttcgttgg ctctcaagga
     2761 actcaccgag gagttagcac agacaataac tgcggaagtt gggacgccaa ttggctacag
     2821 ccgtatggcg atggttggta ctccacgcgt agttgcaaga tcttacgcga aaatgcttga
     2881 atcctacgaa tgggagcacg aagttcgaaa ctcgattatc acgaaggaac ctgtaggagt
     2941 ttgtgctttc atcactccgt ggaactttcc gctccaccag atcgtcggta aggtggctcc
     3001 tgcacttgct gccggctgca ccatggtact caagccatcc aaagaggctc cactaaacgc
     3061 attcttactc gctgatattc tccacgacat tggcctccca cccggggtat tcaacctagt
     3121 cagcggacac ggtagtgagg tcggagagat tctctcggga catccagatg tcgacatggt
     3181 ttcgttcacc ggttccaccg gtgcaggcat ccgtgtctct caggcggctg cacctactgt
     3241 gaagcgcgtg acccttgaac ttggagggaa gtccgcgaat gtaatactcg acgacgccga
     3301 tgtaatccgt gctgcaaaat cttcgattgg tgcctgctac caaaactcag gccagacctg
     3361 ttctgcacta actcgactca ttatccccgt agcacacaaa gaggaaattc tagagttagt
     3421 caaaaagcgt gtagaaggct acactcctgg tgacccacta gctgagaata cacgctgtgg
     3481 accaatggta tctgcgaaac agcaaactag tgtccgcagt tacatacaat cagctattga
     3541 tcaaggtgcg acactgatta caggaggtac cgggatgcca gatggcatcg aaaccggttt
     3601 cttcgttcag ccaactgcct ttgctgacgt cactcctgaa atgacgatct ggaaagagga
     3661 ggttttcggt cctgtaatga caattacaac atacgaatct gaagaagagg cacttgccct
     3721 agcaaacgat tcaatctacg ggctttctgg cggcgtctgg tcaggcgatt ccgagcgagc
     3781 ggtggcattt gcaaagggta tgcgcactgg tcaagttagt atcaacggtg ggccattcaa
     3841 tgtcagtgca ccgtttggag gctacaaaca atcaggaaac ggtcgagaac tcggtgtcga
     3901 aggtttggat gaattccttg agataaaggc aatacaacgc cctattgaat gatttttttt
     3961 tgaggtatga aaatgacgga gattccgttt tggagaatct ttttcgttat tcttggtatc
     4021 attatctctt tttcaggttt gattctttgg aatattccac tgaatgaatc tgtagatgaa
     4081 gatgggtcgg tgaatctcta ttccactgat tcaggatgga acttttgaga atgggttccc
     4141 ccactcatcg gaggagggtt tctcatgtgc tttggaattg ggccttacat tctcctctcc
     4201 ggactagtag ggcgtccatt tttcatatca gaagaggcat ggaatcaaaa gcctcctgat
     4261 atggaataaa cagaagcttg tactgcttca ggctcaatcc atgaaccatt cccgcatagt
     4321 acaagcctga caaatagggc gattcgtcgg ctggccacaa gtatcacagg aacggattga
     4381 ctcattgttt gaaagattag attcacgagc aagttccttg attcgatcca tggattgtag
     4441 taacccatga cgactgcctg gaacatcccg ttcaatttca gcaactatca aacgactcct
     4501 ctgtcgaagc gctccgccag catgagggca gttcccatga tgaatgggta gatctagttg
     4561 aattgcagca gcgtgtatct cctgttctgg aatccagcga agaggtacaa ttcttggcgt
     4621 taacccgtca atcttctgtt cagtgtgtgg agcaagtcga attgtccgat caacctcccc
     4681 cttctgaaga ttcatgagaa tagattgagc aacatcatcg agattgtgcc ccaaagccat
     4741 aacatctgct cctacccttt cagcaagtgc attcaggcct tgacggcgaa atactccaca
     4801 gaaactacac ggcatcatac cattcacctc atcatttgat tctcccacca gaggaaggga
     4861 ttggacaaga gcatccatct ttggaaaaga aagatccgga tacgatattc tctcgagacg
     4921 gatacctaaa tgatcgcaaa gggattgtgc acaatctacc gaaggtgcac gatatccttc
     4981 gataccctcg tcgactactc cggcaataat ctctacatca cgtcgcttac cgagaatccg
     5041 atgaagtaaa tgcaacataa gtgcagaatc cttgccaccg ctcaccgcta caagcacccg
     5101 atatggccgt ccaagagttg aaagtgcatt ctttggaaga gggagttgac gtcgtagtgt
     5161 cttcgataca cgtttgtgaa tcaattcgac gaggtgacta ccacagagat gctgcccgct
     5221 gtatatctga tgtaggatgg aatcacgaga acaacgggaa cagggagtga cttcgaaagc
     5281 actgggcacg aatcacggta gtggcttcat ggcttcaacg aatcgttcaa ttaatcaatt
     5341 ataaattaga ttttccaatt ggaaaataca cttatcgaaa ttagatgtga tgagttagat
     5401 tcctccaatt ggagaatgat tccaattcag attcacggca ccagagaaga aaccctcgaa
     5461 acactatctg tggccccttt caggggcaag ttcttgaagt cgaatacaac ctgaacctct
     5521 ttgaatagca tgattgagaa cgtcgttcgc gcttataccc acctcccagg tgtggtcgaa
     5581 tcatggatgg agaaactaga cggtacaatg attactcctt ccaaagatgg aagatcctct
     5641 atcccttcat ggactacagc cgaacgtcta gcacgtgaat cgggaatcgg gcagctacaa
     5701 gaatggtgga ttgagtctga tcagggggcg gtcatcgctt caagaacagg ggatgacgca
     5761 ttactctgga tgaagactga ttccgcaaga cgacttgggc gttgtgctca cgaagtcagg
     5821 agaacacgag gcgatcttgc caatttgttg aggtgatgaa atgtttgacc taccccatgg
     5881 agaccctatc gaccgcacat tcgatggaag tgcgctgaac gaagtggttg atttcgaatg
     5941 tggaatcatc tcgagttaca aaccaaagtc acgaagcccc tgtgcacaca gaattgtggc
     6001 tggcggacat atagtcggct ggcgggctga tgccgaggag aacaaacact acctcggagg
     6061 acatgcggca aaggcacgat tggtagagtt agaggatgct cacgaattga gacacaaggc
     6121 atacacccta ttgttagagg aagtgcggag cctgattgat ggcattcccg aatgtctggc
     6181 tgatccggca ttgatgggaa cattaggcct agccgggcgg cggctacctg cagccacaca
     6241 tgattggccc ctcgtcgttg acgtgcttga atcggaaact ggagttatcg cagctctagc
     6301 atttgaggat ggagtcctca tccattcttc gggtgagaca ccggctgacc cagatgcact
     6361 ttctgcagat cttgatgctc aaatgagagg catggatgcc ttaactcaac tcatgggagc
     6421 gtcccccgca ccctggtatc gacaagcctt cgatgagcat gaaatgactg tcgcaagaga
     6481 tggcacggca ggattagcaa tctggacgac cggtggagcc gatcctatga cgctcctgat
     6541 gaatgctgca ggcatgattg agcctgcgga atacgatgct gatgcagaga ttttagcgcc
     6601 atcagacgga tttattgttc gagaaggaaa gggtggtgtc gacgcattaa tctcaatgct
     6661 atccacggca aagaccgagg aaattacggg gcatctgaaa tcggaaggca agggagaacc
     6721 cgtatccatc cttctcatag atgggctgcc ttcaggcatc cattcaacag tcgaggaatt
     6781 ggctgcctca attcgtaata tctcatcacc gagtgctgat ctccaacttc accgcttgga
     6841 acgctctgca aggcttacac ttggccgcgg gaatatcgat ggattcactc ttgaagcgat
     6901 gtgtcattcg atagccacag tccgcacacg ttcagagagt aggcgcgacc tccttacgga
     6961 tcggttagat cgactatacc gatttgagat ggggatggac gctgtagcct cttcaaagag
     7021 tcaatggaga ttgttagaca caggtggacg tgctatggcg aagattctgc catcttcttc
     7081 agcaggcaaa gtactacagc ccgaagatcg ccaagtcctc gaccgaatta gacgattaga
     7141 agatgacaaa attggattgg agcgtgaccg tggtcgttta gaacggatgc tcgaagagga
     7201 acatactcaa cgcactcaat ccgatgaaac ccttgcccag aagacagcgc tcctcgatga
     7261 ggccactacc cgggctcgaa gcctaaacga tgaattggac caagcgcgac tcgttgtcca
     7321 acgtgcaggt gaatctagcg aggctgatcg aacgagagca gattctcttg cgaagcgtgt
     7381 tgcagaactc gaacacctcg tcgagcgaaa ggccagtgag attgcatcgg ctatcggtga
     7441 gagcaagaag cgcgaggaac tgagtgtcga gcttgaggag attatgaaga aggaggcaga
     7501 gacgcgcgct accctcaatg atgccgaatc tcggcttgac gaagtccgca ccgcactcaa
     7561 cgaagatgag cgagtccaac gtgtcctctc cgaacaggtc gcatctctac gcgaccgaca
     7621 tcgtctcgct gaagctgaaa caaaggaagc cgaagtacga atgagaaatc atcgagccga
     7681 ggttgcagcg cttgaaggcg acctccacac tctaagaagg caaatcgacg aagatcgagg
     7741 ccgtacgaat gacctcgaga ggaggcaatc cctccttcag accgaattga aagaactcat
     7801 gtcagaacga cggactctga tgcgggaact aggcgatctg gatgctcgga aggcgcaggc
     7861 agaagcagaa ctcagagaga tgattgctga tgcagaagaa ctcactgaag ctcacgaaca
     7921 ggctctagtt gacattgctg aagctgaccg tatccgcgcc cgcctccaag aagagccgct
     7981 cgcacgagcc ctccttgacg acgaggggct gcgtgcactc gaaccagtgc ttgaacggat
     8041 ggaaggggct cgtaatcgtg gcctatctat ggttctcctc gatcgcgctg tcgagagagg
     8101 gctagcggtt attcaacaca cagttgacga agttgcagca acaccacgtc accttctttc
     8161 gactgaagtc atggatcttc ttgaacaaca ggctccagag actgcttctg cggtccgtgg
     8221 tctgacacgt tggtctgttc aacaacgcct gcatcacatg ctcgggcaaa ttgtcaacga
     8281 tgtagtactc gatttggaag acataattcg tggttacgaa gaagcagcca ctaccattgg
     8341 acaaatgcgt gacgtgctcc gtagcctcaa tgaccttggc atgcctggaa gccgaattga
     8401 agcgattgag cgaatgctta cacgccctga gacgctgccg cgcatcgctg ctgaaactca
     8461 agcacttatc cactcagccc tcgatga
//
LOCUS       DUKB01000090           10713 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_28016, whole genome shotgun sequence.
ACCESSION   DUKB01000090 DUKB01000000
VERSION     DUKB01000090.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10713)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10713)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10713
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_28016"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            40..4065
                     /locus_tag="HA345_03120"
     CDS             40..4065
                     /locus_tag="HA345_03120"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012789.1,HMM:NF024117.1,HMM:NF024754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HIH84381.1"
                     /translation="MMRDAGMTAKIDPDTRLAALAEHLNLPTPSSTWEALVRIFHLHR
                     IICSHNGMTNGGGAALFRNNAKVLPSGYLPPGSAPKWERGHKTAPSISKDLNAISERA
                     NLIWSEPEHVFERQMAFIVGNLDTSRPAQMLSAHPIRAPRIDLPTSYSSNGLPKVQRF
                     DLEQETRMLNDLCVVQKATAEILSKLKSDRDLHDFEDTAESVGDLLLARCPKVCRIKL
                     YSPKVVSALDKIDHEQPWSDHHIDAALELSRQAIDNPNEFGLSSVGDAERAHADLVSR
                     VEILQRIRRRYMAMIIDEAQDVNPRQWKLLSRLWGKRKRVAGDPPDENLEWEPTICYV
                     GDLKQSIYLFRQAQVATFHRYAEHLRRINEYEFNTVRVFQGKNALRTDEWSRDPRALH
                     ETFVRASMMSAGHRKALVPEVRFDVTDPLLPLSLGEISNRRAGHVRLAINYRTSKGLL
                     KVMNRWWHDVFDPRHQTFSRADWYAKHQQLHACDERSDEQGVLEWLLPVGPTTVSMVP
                     EDLVDPIDPFQHGKPDRKLLEATLIVERIRALIQGSDCIIGTASGNHSHVEEGNPLDP
                     GDIMVLLPTRKLRDPIVVGLRAHGIPVQADKEGDLLSRQVITPLMGLVQFLARPDHRH
                     HAAWVARSVLVGMNDSMMDEYLRNAPRGSNLISRLIEQTFSVDQKALFRQWENCARSG
                     RILEALELTADYSDLLVAHPTANDRTDVASFIAMVNDVRLEVGGDSVMLADRLMRVKD
                     QGDSAEARTLTSAGAVRLMTIHKSKGLQSKVVILADAFGESLTKATHENQDRLIVSPN
                     IFGVHPKPWPDASEDPISSVWNLSTLLNQSQRHAEARRLLYVAATRAEERLIISGSPR
                     GATWVNGEGIRLDIVQGATPSFGPMLIESMRQSAHREGIESPWLCGGEDASVPALTPK
                     KYTLTIDPLLVQHDLQIGEKDGIGMRIYHSPDCFLDRSQPKTVIQTITEIEEVLSTLD
                     EAESVSLPTPEVHDVLTSDLTPAGLDVAQSCMRRHWFQRHIGLQGEVVRLVKNLDSES
                     GLPPPNVFGSIVHRLVEIGAPSPARDSSSIPLPVDWTADSPSRWEGDELEAVLPGIFD
                     ELLTSSADRDLTADAVRRMIQVLRDSPLGRFLIEENGKWGCLDGVRTELPFGFEMTVK
                     GSPIEVESWSPWGSKTHLTSEHAQGRFSGLVDLVVAYSDDDTSRILPIDLKTEDAYLL
                     WEPPESTEGTLLEVPDNGDLTDAEKEILSKHRHQLVLYHLALVRLEEVRKKAGLIPRT
                     VERPAIWVGISGRLVQMDVSLFEQTLLDLDHLIHELVRIDHGGHANPGAFPRLPLKHA
                     ETCHSCPFSRGSLPICGPSDS"
     gene            4104..5534
                     /locus_tag="HA345_03125"
     CDS             4104..5534
                     /locus_tag="HA345_03125"
                     /inference="COORDINATES: protein motif:HMM:NF013696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HIH84382.1"
                     /translation="MSGIDVVGMREYIEVMWEESVLPSLEDFVRIPAQSPAFDSDWDS
                     RGELDDVIELFSSWIDSIDLEGMSYSVHRIDGRSPILIIDIAGSAPGDVLFYSHLDKQ
                     PPVTELWSEGKHPFEPVREDPYLFGRGSVDDGYGGYLCALAVKSLQKMGLPHPRCRFL
                     IETCEESGSYDLPAYLDAYQNEIGRPDLIVVLDSGAGDYENIWVTESLRGLVGGMLRV
                     EVSREGVHSGLSGGIIPETFRIARNLISRIEDSSTGEVLLPELNTEIGSHLRDRAERI
                     VSVLGDTVWSAYPFLDGVEPQVLDPVEVVLNGNWRPSLAVTGADGFPPIAEAGNVLRP
                     YSEFKLSMRIPPDVNAEVASQAMKEALERNPPHGAKVTYTPEAVADGFCASTLPASID
                     SALNQAAQHLYGEDWMPLFEGGTIPFLSMMQNRFPDAGFLVTGSMGPDANAHGPDEKL
                     HIPASKNLTLAVAMSLTAVADESLSN"
     gene            5613..6329
                     /locus_tag="HA345_03130"
     CDS             5613..6329
                     /locus_tag="HA345_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84383.1"
                     /translation="MDPLSDDEVEEQDSPEMTIRRLESRLAEETQRLERLYEAYRKAE
                     DEIADKQALIEVLEKEALNREIEREGLEHLLSEKDNRIRELELDGAKSNKRVEHLEPE
                     LEKMEEKYSKERAMLGRVYEITEELDEQLQTAQSELGARDDWYVQNMKVFEDLNQAIK
                     ERYEMIESAVQKAAEFQKAQESFKQRMEEAILTAQQTGEPVPVGENVEVSVDPGEDGV
                     LGTDDDEINIQARTDSDSEE"
     gene            6335..7165
                     /locus_tag="HA345_03135"
     CDS             6335..7165
                     /locus_tag="HA345_03135"
                     /inference="COORDINATES: protein motif:HMM:NF014696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84384.1"
                     /translation="MAGIAPPGIGPTLLLGIMSLSTFMIAVLVADPSGIISLIGVLLA
                     CNCAFMAFFHRDPDRPIPRMNGLLVSPADGCVMFVVRERATGRRPTQEELQSSRIEVD
                     PHMGDWFPEPCSQPLRYSTEQRWEKVSEGEESRFDSIRIAIYMSPLDVHVQRSPLAGS
                     IVHMEHRTGKGRRSGPYLRASRKESEGNERIRSVIEHENGRRVEITQISGAVARTIVP
                     YTGPGESLRRGQRFGMIRFGSRVDIRFSADDYEVLVSKGSILLAGQGKIARDLNLESE
                     "
     gene            complement(7166..8377)
                     /gene="cax"
                     /locus_tag="HA345_03140"
     CDS             complement(7166..8377)
                     /gene="cax"
                     /locus_tag="HA345_03140"
                     /inference="COORDINATES: protein motif:HMM:TIGR00378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/proton exchanger"
                     /protein_id="HIH84385.1"
                     /translation="MSDEEHAEEEVESQADIEVESGLSAILNACNPKTSPLNWLLLAV
                     PFAAYTSIAHLDPGIQFGASLIAIMPLAFLMGKATEEIATKTSESVGGLLNATFGNAA
                     EIIIAVVAILAASSALKAGDIATADVYIHLIQASLIGSILGNLLLVMGLSMLWGGIRY
                     RRQTFNTQAVSVNSTLLLLSAICLILPTVYHITLSSGGGWGESEIVDGVLIVSRLAAI
                     ILMISYGSLLFFQLKTHSDLMGSGSSHGHEDATMTLRDAAILLTIATIFVSWMAEIMV
                     HSVEAAGETIGLPAVFIGVILLPLFGNAAEHFTAVVVAGKDRMDLSLGIAIGSSVQIA
                     AFVAPLVILLAWALGVNLSFEFGLLETAVCMLSVLIANSICRDGESNWLEGTMLLATY
                     LIIGIGFLFHP"
     gene            8456..8962
                     /locus_tag="HA345_03145"
     CDS             8456..8962
                     /locus_tag="HA345_03145"
                     /inference="COORDINATES: protein motif:HMM:NF024635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84386.1"
                     /translation="MEPSLVVALTGSPGVGKTTIATLAANAGWTVTTVAELAEAHGMI
                     SEIDHDGAQSIDIEGLASAVELDESMLIDGHLSHLLPVDASVVIRCSPSVLTARLQSR
                     DYPTWKIESNVEWEMVGGPWGDKPNGRTAEFDATDISPDALWMNIEAWLLTGAPNRLP
                     QIDWLSSS"
     gene            9166..>10713
                     /locus_tag="HA345_03150"
     CDS             9166..>10713
                     /locus_tag="HA345_03150"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84387.1"
                     /translation="METSPRSGPDLTVDYLSASWTSADAGDSKSISTRIKNDGSSSSG
                     SFRWGLYLSTDRTITTNDLLLDDWSQSSISSGSTRSSTKSVTIPSSITGGYYYVGMIV
                     DINNQVSESDENNNDDYDSGRVHVYELADLVPRSTSSSCSTPTTGTVGDYLTSSISIQ
                     YENDVSSTHGQSTGTFYWAMYLSTDSTITTSDTQVGSDQYSSSLSSGSYRTDSLSSST
                     RIPSSMNAGTYYWGYILDVDSDVDEASESNNARTCNQITLQEDLPDLEATSVSTSSSS
                     AIMGDTITVQYRIDNIGTDYSGSFYWKLYLSTDSTITTSDTYVDEFSESSISGGSYRS
                     GYEYNVPIPTGMNPGYYYLGLIADNRGSVNELDETNNVVSSSSRIDIEEPADLTPDSP
                     SGPNTAQAGQQVSISWRIDNAGDDASGWFYWEMYLSTDSTITTSDTKLGSTQQASSIS
                     GGSYRSGTYSPTLPSNLAQGTYYFGIIVDSTSRVSEGDETNNVEVGNSLYIAVPDYDL
                     EATSISVD"
BASE COUNT         2726 a         2500 c         2732 g         2755 t
ORIGIN      
        1 ctggaaaggc tgcaggaacc gattcaatgt tggtttgata tgatgaggga tgcgggaatg
       61 accgcaaaaa tcgatccaga cactcgcctt gcagcccttg ctgagcatct caatcttcca
      121 acgccatctt ctacatggga ggccttggtt cgcatcttcc accttcatcg gattatttgc
      181 tcacataatg gaatgacgaa tggaggcggt gctgccttat tcagaaacaa cgcgaaagtc
      241 ctcccaagtg ggtacctccc acctgggagc gctcctaagt gggaacgagg ccacaagacg
      301 gctccttcaa tcagcaaaga tctgaatgca attagcgagc gagcgaatct tatttggtca
      361 gagccagaac atgttttcga gcgccaaatg gctttcatcg ttggtaattt agatacgagt
      421 cgccctgccc aaatgttgtc ggcacatcct atacgagcgc cacgaatcga tttgccgact
      481 tcgtattcaa gcaatggttt gccgaaggtc caacgttttg atctagaaca ggaaacgagg
      541 atgctcaatg acctctgtgt agttcaaaag gcgaccgccg agatcttatc gaaattgaag
      601 tcggatcgag acctccatga ctttgaagat acagcggaat cagttggtga tctccttctt
      661 gcccggtgcc cgaaggtctg ccgaatcaaa ctctattcac ccaaggttgt gagtgctctc
      721 gacaaaattg atcatgaaca gccctggtct gatcatcata tcgatgccgc gttagagttg
      781 agccgtcaag ccatcgataa tcccaatgaa ttcggactat ctagtgtagg tgatgcagaa
      841 cgcgcccatg ccgatcttgt ctctcgggtg gaaatcctcc aaagaatacg tcgacgatac
      901 atggcgatga ttatcgatga ggctcaggac gttaaccccc gtcagtggaa gttactttcc
      961 cgactctggg gaaagcgcaa gcgtgtcgca ggagaccctc ctgatgagaa tttggaatgg
     1021 gagccaacaa tttgctatgt tggagaccta aagcagagta tctacttgtt taggcaggca
     1081 caggtagcta cctttcatcg atatgcagaa catcttcgcc gtatcaatga atacgaattc
     1141 aatactgttc gggttttcca aggaaagaat gctctacgta cggatgaatg gagccgagac
     1201 cctcgagctc tccatgagac ctttgtccgc gcttctatga tgagtgctgg acatcggaag
     1261 gctttggttc ctgaagttcg atttgatgta accgatcctt tgctcccact atctctcgga
     1321 gaaatatcta atcgacgtgc tggtcatgta cgtttggcca ttaactaccg tacatcgaaa
     1381 ggtcttctca aggtcatgaa ccgatggtgg catgatgtat ttgaccctcg tcatcagacc
     1441 ttcagtcgtg cagattggta tgctaagcat cagcaattgc acgcttgtga cgagcgttcg
     1501 gatgaacaag gtgtactcga atggctcctt ccagtaggac ctaccactgt ttccatggtt
     1561 cccgaggatt tagtcgaccc catcgatcct ttccaacatg ggaaaccaga tcggaaactg
     1621 ctggaggcga ccctcatcgt tgagcgtatt cgtgctctaa tccaaggatc agattgcata
     1681 attggaacag cctcaggtaa ccatagtcat gtggaagaag gcaatccttt ggacccggga
     1741 gacatcatgg ttcttcttcc aactcggaag ttgagagatc cgattgttgt aggacttcgt
     1801 gcacatggga ttccggttca agccgataag gaaggtgatc ttctcagtcg ccaagtgatt
     1861 acccctctca tgggattagt gcagttcctc gctcgcccag atcatcgaca ccatgcggct
     1921 tgggttgctc gctcagtact tgtaggcatg aatgactcga tgatggatga atatcttcgg
     1981 aatgccccac gtggtagcaa cctgatttcg cgtcttattg aacagacatt ttcagtggac
     2041 cagaaggctc tgttccgcca gtgggaaaat tgtgctcgca gtggacgaat tcttgaggca
     2101 ttagaattga ctgcggatta cagtgaccta ctagtcgctc atcctacagc gaatgatcgc
     2161 acagatgtcg cctcgtttat tgcaatggtg aacgatgtta ggttggaggt aggtggggat
     2221 tccgtaatgc tggcagaccg tttgatgaga gttaaggatc agggagatag cgcagaggca
     2281 cgaaccctca cttctgcagg ggcagttcgt ctcatgacta ttcacaagtc gaaaggcctt
     2341 caatcgaaag tggtgattct cgccgatgcc tttggtgaat ccttgacaaa ggcaacccat
     2401 gagaatcaag atcgcctcat tgtatctccc aacatattcg gtgttcatcc aaagccttgg
     2461 ccggatgcat ccgaggatcc aatttcatcc gtatggaatc tctcaactct gctaaatcag
     2521 tcacaacgtc atgcagaagc aaggaggctt ctgtatgtgg ctgcaacccg ggcagaagaa
     2581 cgcctcatca tctcgggttc tccaagaggt gcgacttggg tcaatggaga ggggattcgt
     2641 ctagatattg tacaaggtgc aacacccagt ttcggtccga tgctcatcga atcgatgcgc
     2701 caatctgctc atcgagaggg aattgagtca ccatggctat gcggcggcga agatgctagt
     2761 gtacctgccc tcactccgaa gaaatacact ttgacgattg atcccctgtt agttcagcat
     2821 gatctccaaa ttggtgagaa agatgggatt ggaatgcgaa tttatcattc acctgattgc
     2881 ttcctcgatc gttcgcaacc gaagactgtg attcagacaa ttactgagat tgaagaagtc
     2941 ctttcaacgc ttgatgaagc ggaatcggtg tcgttaccta cgcccgaggt gcatgatgtt
     3001 ctaacctcag atttgacacc tgctggattg gatgtagctc agtcctgtat gcgtcgccat
     3061 tggttccagc gccacattgg attgcagggt gaggtagtac gtttagtcaa gaatcttgat
     3121 tcagagagtg gattacctcc tcccaacgta ttcgggagca tcgttcatcg cttagtcgaa
     3181 attggtgccc caagtcctgc aagagattct tcatccattc ctctaccagt ggattggaca
     3241 gcggattcac cttcaagatg ggaaggcgat gaacttgaag cagttcttcc aggtatcttc
     3301 gatgaactcc tgacgagttc tgcagatcgt gatttgacag ccgatgcagt tcgacgtatg
     3361 attcaggttc tacgtgattc ccccctcggt cgtttcctca tagaggagaa tggaaaatgg
     3421 ggatgtttgg atggtgttcg aactgaattg ccctttggtt ttgagatgac tgtaaagggc
     3481 tctccaatcg aggtcgagag ttggtctcca tggggttcca aaactcatct cacttcggaa
     3541 catgcacaag gacggttcag tggactagtt gatttggtcg tggcctattc cgatgatgac
     3601 acctctcgaa tccttcctat tgatctcaaa acagaggatg cgtatttgct atgggaacct
     3661 ccagaatcaa ccgaaggaac gctgctggaa gttccagata atggggattt gactgatgca
     3721 gagaaggaga ttttgtcgaa gcaccgccat caacttgtac tgtatcatct ggctctagta
     3781 cgattggaag aggtaagaaa gaaggccggc ttgattccga gaaccgtcga aaggcctgcg
     3841 atatgggttg gaatcagtgg gcgcctcgtg cagatggacg tttctttgtt tgagcagaca
     3901 ctcctcgatc tcgaccatct tattcacgaa ttagttcgca tcgaccatgg aggtcatgcc
     3961 aatccgggcg ccttccctcg acttccattg aagcatgcag aaacatgtca ctcttgtcca
     4021 ttctcaagag gttctctacc tatttgtggc cctagtgatt cttgagcgaa gagtcaatgt
     4081 gctggcactt gtcacgtggc ttcatgtctg gaatcgacgt cgttggaatg cgcgagtaca
     4141 tcgaagtgat gtgggaggaa tccgttctac cctccctcga agattttgtt cgaattcctg
     4201 ctcaatcacc ggcgtttgat tcggattggg actcaagagg ggaactagat gatgtgattg
     4261 aactcttcag ttcctggatt gattccatcg atctcgaggg tatgtcatac agtgttcatc
     4321 ggattgatgg gcggagtccg attctcatca tagatatcgc aggatcagct ccaggtgatg
     4381 ttctgttcta cagtcacttg gataagcaac ctccagtaac tgaactctgg tctgagggaa
     4441 agcatccttt cgagcctgtt cgagaggacc cttacctgtt tggtcgagga agtgttgacg
     4501 acggttatgg tggctatctc tgtgctttgg cggttaagag tctgcaaaag atggggctgc
     4561 ctcatccgcg ttgtcgcttt ctaatcgaga cctgcgagga atcgggatcc tacgacctcc
     4621 ctgcctatct agatgcatat cagaatgaaa tcggtcgacc cgatctaatc gttgtactcg
     4681 actctggtgc tggtgattat gaaaatatct gggtcacaga atctcttcga ggacttgtcg
     4741 gaggaatgct tcgtgtggag gtctcaaggg aaggagtcca ctctggtctt tcaggaggca
     4801 tcatccccga gactttccgt attgcccgca acctgatctc acggattgag gattccagca
     4861 ccggtgaagt tcttcttcct gaactgaata cggagattgg ctcacacctg agggataggg
     4921 ctgagagaat cgttagtgtt ctaggagata ccgtctggtc tgcttatccg ttcctcgatg
     4981 gcgttgaacc acaggtcctc gatcctgtcg aggttgtttt gaatggtaac tggcgacctt
     5041 ctcttgcagt tactggagcg gatggttttc caccaatcgc cgaagcggga aacgtgttgc
     5101 gcccatactc tgaattcaaa ctctctatgc gaatcccgcc tgatgtcaat gcagaggttg
     5161 catcgcaggc tatgaaagag gcattggaac gaaaccctcc acatggtgcg aaggtgactt
     5221 acacccctga agcggtagct gatggtttct gcgcgtccac cctacctgca tcgattgatt
     5281 ccgcattgaa tcaggctgct cagcatctct atggagagga ttggatgcca ctgtttgaag
     5341 ggggtactat tccgttcctt tcgatgatgc agaaccgctt tccagatgcc ggattcctag
     5401 tgactggatc tatgggcccc gatgcaaatg cacacggtcc agatgagaag ttgcatattc
     5461 ccgcttcaaa gaacttgaca ctcgctgttg ccatgtctct cactgcagtc gccgatgaat
     5521 cgctctccaa ttgagcaatc agaatcagta gtgcgcgcct gctcgcagga agcgccgccg
     5581 gggttaaagc ggaaggtgct ctggaggtgt cgatggaccc cctgagcgat gatgaggtgg
     5641 aagaacaaga ttcgcctgag atgaccatcc gtcggcttga gtctcgcctc gcagaggaga
     5701 ctcagagatt ggagcggttg tacgaagcct atcgaaaggc agaggacgag attgcggata
     5761 agcaggctct gatcgaggtt cttgagaagg aagccctcaa tcgtgaaatt gagcgagaag
     5821 gtctagagca cctcctttcc gagaaggaca atcgaatacg tgaactcgaa ctcgatggtg
     5881 cgaagtccaa caaacgtgtc gaacatctag aacctgagct tgagaagatg gaggagaagt
     5941 actccaagga acgcgccatg cttgggcgag tatacgaaat cacagaagaa ctcgatgagc
     6001 aacttcagac cgctcaatcc gaacttggag cgcgagacga ttggtatgtc cagaacatga
     6061 aggtctttga ggacctcaat caggcaatca aggaacgtta tgagatgatt gaatcggcag
     6121 tccagaaggc tgctgagttc cagaaggccc aagagagttt caagcagcgg atggaggaag
     6181 caatactcac agcccagcaa accggagagc cagtcccagt aggggagaat gttgaggtca
     6241 gcgttgatcc tggagaagat ggggtgctcg gcacagatga tgatgaaatc aacatccaag
     6301 ctcgaacgga ttctgattcc gaagagtgag aaatgtggct ggcattgcgc caccagggat
     6361 aggtccaaca ttgctcttgg gcatcatgtc tctgagcact ttcatgattg ctgttcttgt
     6421 tgcagatcct tcaggaatca tttctcttat tggtgtctta ttggcttgta attgtgcatt
     6481 tatggccttc tttcatcggg accccgatcg cccaatacct cgtatgaacg ggcttcttgt
     6541 cagtcccgcg gacggatgtg tcatgtttgt tgtccgtgag cgagctacgg gccgacgtcc
     6601 tactcaagaa gaattacaaa gcagccgcat cgaagtggat cctcacatgg gagattggtt
     6661 tcctgaaccg tgctctcaac cattgagata ctcgacagaa caacgttggg agaaggtatc
     6721 tgaaggtgaa gaatctcgct ttgattcaat cagaattgcg atctatatgt cgcctctaga
     6781 tgttcatgta cagcgcagtc cgctggctgg aagtattgtg catatggagc atagaaccgg
     6841 taagggtagg aggagtggcc cctatcttcg tgcatcgagg aaggaaagcg aagggaatga
     6901 gcgaattcgg agtgtcattg aacatgagaa tggacgtcgg gtggagatta cacaaatctc
     6961 tggtgcagtg gctaggacta ttgttccata taccggtccg ggtgagtcac tcagacgcgg
     7021 tcagaggttt ggaatgattc gtttcggttc acgcgtagat atccggtttt cagcagacga
     7081 ctacgaagtt ctagtatcga aaggttcgat tctcctcgca ggtcaaggta aaattgcacg
     7141 agacctgaat cttgaatccg aataatcacg gatggaatag gaaaccgatt cctatgatta
     7201 ggtaggtggc gagcagcata gtaccttcta gccagtttga ttcaccgtca cgacagatac
     7261 tgtttgcaat caggacagag agcatgcaga cagccgtctc taagaggccg aattcaaagc
     7321 ttagattgac acccagtgcc caagcgagta ggatgactag tggtgcaaca aaggctgcga
     7381 tttgtaccga agaaccgatg gcaattccca atgatagatc catccgatct ttgccggcga
     7441 ccacaacagc agtaaaatgc tcagcagcat taccaaacaa aggaagcaag attacaccaa
     7501 tgaaaactgc aggtaggccg attgtctcac cagcggcttc tacggagtga accataatct
     7561 cggccatcca agacacgaaa attgtggcga tggttagtag gattgcagca tccctcaatg
     7621 tcattgtagc atcttcgtgt ccgtgactac ttccactacc catcagatcg gagtgcgtct
     7681 tcagctggaa gaaaaggagt gacccataag aaatcattag gataatagca gccaatctag
     7741 atacaatcag aactccatca acaatctcag attctcccca tcctcctcct gaagataagg
     7801 tgatgtgata cacagtaggg agaattagac atatggccga gaggagtaag agtgttgaat
     7861 tcacactcac ggcttgagta ttgaatgtct gccggcgata acggattcca ccccagagca
     7921 tggacaaacc catgacgagt aggagatttc caagtatgct tccaatcaag ctcgcttgta
     7981 tcaagtgaat gtatacatca gcagtagcaa tatctccagc ttttagcgcc gaggatgcag
     8041 caagaatcgc aacgactgcg ataatgatct ctgctgcatt tccaaaggtt gcattcaata
     8101 gtcctccaac agattcagag gttttggtag cgatttcttc agtagccttt cccatcaaga
     8161 aagcgagtgg catgatggcg attagagacg ctccgaattg aattcctgga tctaggtggg
     8221 caattgaggt gtaggctgcg aagggaaccg caagaagaag ccagttcaaa ggggaggtct
     8281 ttgggttaca ggcatttagg attgcagata acccactttc gacttcaata tctgcctggg
     8341 attctacttc ttcttcggcg tgttcctcat cggacataat gggttgacag aagattcgga
     8401 gcgtgaaggt tccgggaggc ggagcgttca tgccaacagt tctcaagcgg tctttgtgga
     8461 accgtctctg gtagttgctc tcactggtag tccgggagtt gggaagacga ctattgccac
     8521 attggcagcg aatgcgggct ggaccgttac tacagtcgct gaacttgctg aggcacatgg
     8581 tatgatttct gaaatagacc atgatggtgc tcaatctatc gatattgaag gtcttgcatc
     8641 tgcggtcgaa ttagatgaat caatgttaat cgatggccat cttagccatc ttcttccagt
     8701 agatgctagt gtagtaattc gttgttcacc ttctgttctc acggctcgtc tccaatcacg
     8761 tgattaccct acctggaaaa tagaatcgaa tgttgaatgg gagatggttg gtggaccgtg
     8821 gggcgataag ccgaacggac gtactgctga atttgatgct acggatatct cgccagatgc
     8881 cctctggatg aatattgagg catggctctt gaccggagcc ccgaatcgac ttcctcagat
     8941 tgattggctt tctagctctt gattcaatgt atttcgcaga cgaaccacat attcacctcc
     9001 agagttatcc accacaagat atacgtccaa caactgttac ggggagcgac catggcctct
     9061 agagcaagca cgattcgatt cgtcgcgctt ttggcacttt tttcgatgtt attggccttg
     9121 gcaccggccc cccaagtcga agaattgagt ataactgatg cttcgatgga gacgagtccc
     9181 agaagtggcc ctgatctcac agttgactat ctctcagcgt cttggacttc agcggatgct
     9241 ggagattcca aaagtatcag tacgagaatc aaaaatgatg gaagttcatc atcaggttcg
     9301 tttcgatggg ggttgtattt gtccacagat aggacaatta caaccaacga ccttctgttg
     9361 gacgattggt cgcagtcgag catttcctca ggtagtaccc gttcatcaac caagagtgtg
     9421 acaatcccat catcaatcac gggtggttac tactatgtcg gcatgattgt tgatatcaat
     9481 aatcaggtca gtgaatctga tgagaacaac aatgacgatt acgattcagg ccgagtccac
     9541 gtctatgaat tagctgattt ggttcctcga agcacctcat cgtcatgttc tacgccaacc
     9601 actggcacgg ttggagacta tctcacatca tcgatttcaa ttcaatatga aaatgatgtt
     9661 tccagtactc acggccaatc aacgggcaca ttttactggg cgatgtatct ctccacagat
     9721 tccaccatca caactagcga cacacaagtt ggcagcgatc aatactcgtc cagtttgtct
     9781 tcgggtagtt atcggacaga ttctctatcc agtagtactc gaatcccttc ctccatgaat
     9841 gctgggacct attattgggg atacatcctc gatgtcgatt ccgatgtcga cgaagccagc
     9901 gaatcgaaca atgctcggac ttgtaatcaa attacgcttc aagaggacct cccagatttg
     9961 gaggccacgt cagtcagcac ctcatcatcc tctgcaatca tgggtgatac tatcactgtg
    10021 cagtatcgga tcgacaatat tggcactgat tattctggtt cgttctactg gaaactgtat
    10081 ctttcgaccg attcaaccat caccacatcg gacacatacg tcgatgaatt cagcgagagc
    10141 agtatcagtg gcggttctta ccgctctggt tacgaataca atgttccgat tccaactggt
    10201 atgaatccag gatactacta tcttggccta atcgctgata atcgcggcag tgtaaatgaa
    10261 ttggatgaga cgaacaacgt tgtttcctcc agctcacgaa tagatatcga ggagcctgct
    10321 gatttgactc cagacagccc gtctggacca aatacagccc aagccggcca acaagtgagt
    10381 atttcttgga ggatcgacaa tgctggagat gatgcatctg gctggttcta ctgggaaatg
    10441 tacctttcaa ccgattctac catcacaacc agtgatacga aattaggatc cacccaacag
    10501 gcgagcagca tttccggtgg gtcatatcga agtgggacat atagtccgac gctgcctagc
    10561 aatttggctc aagggaccta ttatttcgga atcatcgtag attctactag tcgagtgtcg
    10621 gaaggtgatg agaccaacaa tgtcgaagta gggaattcgc tctacatcgc ggttccagat
    10681 tatgatttgg aggcaacctc gatttcagtt gat
//
LOCUS       DUKB01000091            8302 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_84527, whole genome shotgun sequence.
ACCESSION   DUKB01000091 DUKB01000000
VERSION     DUKB01000091.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8302)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8302)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8302
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_84527"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2849
                     /locus_tag="HA345_03155"
     CDS             <1..2849
                     /locus_tag="HA345_03155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF11 domain-containing protein"
                     /protein_id="HIH84388.1"
                     /translation="APPMPPMGAPPAPPGPPVDLLGGDLLSTPPAPPGLEFESDDSSD
                     ESADPLADFGDSLASDLLGSSAEATVEEPEVEVTDALSSLSIDSDPVDAGSLDMPVSE
                     PTADHTGARVRPVSVVDSLIGDKLHVQLHEVENTHVSSDGEVQKQKVDGTLTLENPSD
                     KDRLWDLDVFLTSTDNTDFDDSRVRVRELEAGADTSFDYSVSGPQMIRVSEVIDTHPE
                     REKPSYSLSHSDEPVLMNMNLSVENTANCDLTDVKVCRTIPSQFTYHGHDHITVDGDE
                     FVWTIGTLPAGSTTQLSLSADVIAAEVGDFDAGKTTVTYEASSTLSGTGFQEVDGCSR
                     CFSYMNANEGERLDTWACQAVFENKSSFAVDLVLLRVNIAGESEPLFDIMDVPDDVKP
                     GGRWESDEKSVDSRDQPNFSQELTYSVIPRASRSTSGTITMEPTVLTVLEADVSKAMD
                     MAVLKSYRPADINVEMKVKNTGSADINLMRISDDIPGLFASPDLDTVRLDIDGDELLS
                     DMYKVDVKDGQTIEEEHVSPDGPGHTLRITVGTKGPIGLSDGSTLRVRYKVHAPDPSP
                     DNKLVMAPVRVDFSAEKNGPIATRGAEEVPTLRVSHKRRKFNTGKEVFPAGGAGRYEV
                     LVMFHNKSDTALEDLIIHDVIPHGFELKSTRIDSNKGNEHDTAHSEEVHDEGTKVVWN
                     IGVIAKDERIEIMYEILGDADSEFEVKSAQEFHGVTFGDEIDEDYNNQAPALVVEETV
                     DDADEESEEEASAPKSMGFSDNVLDRVMKKHGIEDREGFIAHASSFDDDDNGYLNERE
                     LNNAADAWGDDSDASDVEDDDEDHGDDDDSNDEASSESDDDTVSEESSEEEDTSEEEG
                     DSDDAADESVEEESTDGDDSSESEDDMMDAMMDQLMADSFKSDGDSDGSEVAVESEIE
                     AVEDAAPAGTVTCPICQASNDALAAQCSTCSYVF"
     gene            complement(2851..3540)
                     /locus_tag="HA345_03160"
     CDS             complement(2851..3540)
                     /locus_tag="HA345_03160"
                     /inference="COORDINATES: protein motif:HMM:NF024824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH84389.1"
                     /translation="MDGPDETLRAAMSAEASGNRDEAITILKDARKRWPQHATFAVRL
                     AESYRAKGEHKAAVKVLKKVIKNHPERLDAALTSARSNLVLGKAKIAERQFMRALSIG
                     MDPIEGVVSICKCWMIRGRNQEAWTSALAEFKRTGATHWGLHGILTEIGPMLGHPIPA
                     MDPIAEQTEKNPNQNRDNSSILEVHTSSEVPDEGTSSRPTINAADLLDELLDNPEESQ
                     DSQRDILDFEL"
     gene            3630..4541
                     /locus_tag="HA345_03165"
     CDS             3630..4541
                     /locus_tag="HA345_03165"
                     /inference="COORDINATES: protein motif:HMM:NF014061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMCO1/EMC3 family protein"
                     /protein_id="HIH84390.1"
                     /translation="MAQPSDDPEIPMGSMLTPLLMLVVMSFFIFIPSVRETLSVVAGS
                     VLEPAIPFHDTLFVPTVLILGCSIMVINTLIRSFFMDNVKQAHFSHRNKQLRSIMNEA
                     RLERNNARLEKITRIQQKMMPEQMKMQTAMMRPMMFTMIFIFGIFGWMYTNVESFRVD
                     HVSLPWVPQWDMNARVMWIFPAWVFVYICLSAPLGRVLDRHIRLIRYRTHPLMVAGEK
                     VPEPLLAMLKDNPKENASSMKVRQSQRGGRRKRSNKEESLIPKSANTILSPTAVQGEC
                     PVCNSSNIARGKGGRLRCNVCWESFRS"
     gene            4554..5090
                     /locus_tag="HA345_03170"
     CDS             4554..5090
                     /locus_tag="HA345_03170"
                     /inference="COORDINATES: protein motif:HMM:TIGR02173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84391.1"
                     /translation="MVRITVSGLPGSGTSTLVRGICGSLGWSALNGGDVFREEAASRG
                     LSVAEFSQLCKSDPAVDRELDSRLVEAMEDVSGPEIVESRLAGWWAYRNNIDCLRIWV
                     EVDLDERLDRVTLREGDDVRRREESLLREEADRQRYTELYGIDILSMEPYDLVIDGTK
                     PSATDVLQVVLTAMGDAS"
     gene            5087..6070
                     /locus_tag="HA345_03175"
     CDS             5087..6070
                     /locus_tag="HA345_03175"
                     /inference="COORDINATES: protein motif:HMM:NF003280.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HIH84392.1"
                     /translation="MTVRVLDSGATTDEASGAPIWQRPIEERMDSGLILIDKPPGPTS
                     HQVAAWARDILGVDHLAHGGTLDPFATGVLTLMTGRARRLTSQVLGHDKEYIGVLKVG
                     GDADMEALAAQVSKLRGEIYNVPPTESAVKIQVRTRRIKAFEILDTDERLAVLRVACA
                     AGTYIRTLARDLGLMIDAPIQLIELRRTRSGRFTEDMIISMAELTDAVHLWKKGGDAS
                     AMLRIVSPIDALFDGRSGLVLKDGAVAAVAHGAVLTRPGIQAINGDFETGDDIVLWSM
                     KGEVVAVANASRSTSEIPSIESGEVARPHTVLMPSETYPRKWQGGPNQINS"
     gene            complement(6238..>8302)
                     /locus_tag="HA345_03180"
     CDS             complement(6238..>8302)
                     /locus_tag="HA345_03180"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84393.1"
                     /translation="GSTTSNLLLNMSLVFVFEIPDTLQDDEVNFIIDRGEGPVLIHTV
                     HHTFQPTIYTASSPLVIEVSDDDEPWTWSDIENLDVLIDYVSVNNFDDSQLELDAVAV
                     HTRHRAPWYAFETATAVHTTPSLDFPVLDFNSLDGVTNDLTIASCGLTPSSSSAGIWT
                     ISDIDRPYIQQWGRVHLSMDGNASIQIRESGQTGWTSMNDGALIPLNVDRVDIRVTIL
                     DGCVEGIRIDINDPTLTFDYAISGDTNGLVGAISTLRFALGGVLVEEIPIVASNGTVS
                     TSVGHLLATDGESLIIGIGARFQWSSSGDPGSVQIDIGEISISGAYVVEFDQDPICQT
                     VDAQAFDEDDPGRYIPFRFYCTDDITPIGSLTVTASSSDATILASSVVNGELLLVPQV
                     EQSGNVDVEIIVEDERGNQWTQSLPVSIQSVDDAPLLTGFVTSLYMEIGTPHVVTVTI
                     TDIDSDNLQVTTDTAWATVAQSGSDADSWTLTFAPSETGQTFVEVSVDDGTTTVNRTI
                     EVIATSNPDLAVESIDLIHANTALTEPYTIEQGQVISIRVWVRNTGIVEANGVDVECK
                     AGDASLPSGTIATIQPGGLDSIVCNWSASGDGDIMLSATADSNGLIDETDETNNERSI
                     TISITEVETNPGEWTSIDTESDSFPIMMMLSILIGGGAVALYMFGPRKIQRTHNLPAR
                     RPKNR"
BASE COUNT         1955 a         1927 c         2207 g         2213 t
ORIGIN      
        1 tggcgccacc gatgcctcca atgggtgctc ctcccgcgcc tcctggccct cctgtagatt
       61 tgctcggagg agacctcctc tctactcctc ctgcaccgcc tgggttagag tttgaatccg
      121 atgatagcag tgatgaatct gcagatcctc ttgcagattt tggcgattct ctcgcgagtg
      181 atctccttgg ttcctctgca gaagcaactg tggaagagcc tgaggtagag gtaacggatg
      241 cgttgagttc tctcagtata gattctgacc ccgtagacgc aggttctctt gacatgcctg
      301 ttagtgagcc tacagctgac cacactggag ctagggtccg cccagtatca gtggtggact
      361 cccttattgg tgacaaactg catgtccagt tgcatgaggt ggagaacacc catgtgtcca
      421 gtgacggtga ggtccagaag cagaaggtgg atggaacatt gactcttgag aatccgagtg
      481 acaaggaccg actttgggat ctcgatgttt tcctgacttc gacagataac actgattttg
      541 atgatagccg tgtccgagtt cgtgaacttg aggctggagc agacacatca ttcgactact
      601 ctgtgtcggg gcctcagatg attcgtgttt ccgaagtcat cgacacccat cccgagcgag
      661 agaagccatc gtactctctc tcacattcgg atgaacctgt cttgatgaac atgaacctca
      721 gtgttgagaa tacagccaac tgtgatctca ctgacgtcaa ggtttgtcgt accatccctt
      781 cccagtttac gtatcatgga catgatcaca tcaccgttga tggcgatgag ttcgtttgga
      841 ccattggcac tctgcctgca gggtctacga ctcaactctc tctctcagcc gatgttatcg
      901 cagctgaggt gggtgatttt gatgcaggta agacgactgt tacctacgag gcttcctcta
      961 ctctatcagg cacaggtttc caagaggtcg atggctgttc gcgctgtttt tcctacatga
     1021 atgccaatga aggggagcgt ctagacactt gggcttgtca ggctgtcttt gagaacaaat
     1081 cgtccttcgc ggttgatctt gtacttctac gtgtgaatat cgcaggtgag agcgaaccgt
     1141 tgttcgatat catggatgtt cctgatgatg tcaagccagg agggcgctgg gagagcgacg
     1201 agaagtcggt tgattccaga gatcagccta acttcagtca agagttgacc tatagcgtga
     1261 tacctcgtgc atctcgttcc actagtggaa caatcacgat ggagcctaca gttctcacag
     1321 tgctcgaggc ggatgtgtcc aaggcaatgg atatggctgt tctcaagtcc tacaggcctg
     1381 cggacatcaa tgtcgagatg aaggtcaaga acaccggaag tgcggacatc aatttgatgc
     1441 gtatcagcga cgatatccct ggtctgtttg catcacctga tctcgacaca gtacgtctgg
     1501 atatcgatgg tgatgagttg ttgtctgaca tgtacaaagt cgatgtgaag gatggtcaga
     1561 ccatcgaaga ggagcatgtt tctcctgatg gtccagggca cacactgcga ataacagtcg
     1621 gaaccaaggg tcctattggt ctgtctgacg gttctactct tcgtgtccgt tacaaggtcc
     1681 atgcacctga tcccagtcct gacaacaagc tcgtgatggc accagtccgt gttgacttca
     1741 gtgcggagaa gaacggccct atcgctacgc gcggtgcaga ggaagttcca acattacgag
     1801 tcagccacaa gcgacgtaaa ttcaacactg gcaaggaggt attccctgcc ggtggagccg
     1861 gacgctatga ggtccttgtg atgttccaca ataagtcgga tacggcgctt gaagatctga
     1921 ttatccatga tgtgattcct catggatttg aactcaagag cactcggatt gattccaaca
     1981 agggtaacga gcatgatact gctcacagtg aggaggtcca cgatgagggt accaaggtgg
     2041 tctggaacat tggcgtgatt gccaaagacg agagaattga gatcatgtat gagattctcg
     2101 gcgatgctga cagtgagttt gaggttaagt ccgctcagga gttccatggt gtgaccttcg
     2161 gcgatgaaat tgacgaggat tacaacaacc aagcaccagc tttggttgtc gaagaaacag
     2221 tagatgatgc tgatgaagaa agcgaagaag aggcctctgc tcctaagtca atgggattct
     2281 ctgataatgt tcttgaccgt gtcatgaaga agcatggaat cgaggatcgt gagggtttca
     2341 ttgctcatgc ttcgagtttc gatgatgatg acaatggtta cctcaatgag agggaactca
     2401 acaacgcagc ggatgcatgg ggggatgatt ccgatgcatc tgacgttgag gatgatgatg
     2461 aggatcatgg cgatgatgat gattcaaacg atgaggcctc ttcagagtcg gatgatgata
     2521 cagtttctga ggaatcttct gaagaggagg atacttccga ggaagaaggt gatagtgatg
     2581 atgcggctga cgaatctgtc gaagaagaat ctacagatgg agatgattcc tctgaaagtg
     2641 aggacgatat gatggatgct atgatggatc agctcatggc ggactcgttc aaatctgacg
     2701 gagattcaga tggtagtgaa gtagccgttg aatctgaaat cgaggctgtt gaagatgcgg
     2761 ctcctgctgg aactgttact tgcccaatct gtcaggcatc taatgatgcc cttgcggctc
     2821 aatgtagtac ctgctcctac gtcttctgat ttagagttca aagtccaaaa tatccctttg
     2881 agaatcttga ctttcctctg gattgtcgag tagttcatcc aagaggtctg ctgcatttat
     2941 tgtgggcctt gatgaggtgc cttcatcagg tacttctgag gatgtatgca cttccaagat
     3001 agatgagtta tctcggtttt gattaggatt tttttcagtt tgttctgcaa tggggtccat
     3061 tgcagggata ggatggccaa gcattggccc aatctcagtc aaaattccat ggagtcccca
     3121 gtgcgtagcg ccagtccgtt tgaattcagc tagtgcactt gtccatgcct cttggttacg
     3181 gccgcgtatc atccaacatt tacagattga gacgacccct tcaatcggat ccatgcctat
     3241 cgagagtgcc cgcatgaact gcctttcagc aatttttgcc ttgccaagaa caagattcga
     3301 gcgagcggag gtaagggcag catcgaggcg ctcaggatga ttcttgatga ccttcttgag
     3361 tacctttact gcagccttgt gttctccttt cgcacggtat gattcagcta gacggactgc
     3421 gaaggttgcg tgttggggcc accgtttccg tgcatctttc aggatggtta tggcctcgtc
     3481 cctattcccg gatgcttctg ctgacatcgc agcacgtagg gtctcatctg gtccgtccat
     3541 gctggttgca gtgaactcgg atgaatcaag cctttcgatg atatccttgg accgaatggt
     3601 tcattcaact tcgtccatga aaatgtagtg tggcccagcc atctgatgac cctgagatcc
     3661 caatggggag tatgcttact ccattgttga tgcttgttgt gatgtccttc ttcatcttca
     3721 taccatctgt tcgggagacc ctttccgttg ttgctggcag tgtcctagag cctgcaattc
     3781 cattccatga tactctattc gtcccaactg tccttattct tggatgttcc attatggtga
     3841 tcaatactct gattcgttca ttcttcatgg ataatgtcaa gcaagcacac ttcagtcacc
     3901 gcaacaagca acttcgctct atcatgaatg aggcacggtt ggagaggaac aatgctcgcc
     3961 tagagaagat tactcgcata caacagaaga tgatgccaga gcagatgaaa atgcagactg
     4021 cgatgatgcg tccgatgatg ttcacgatga tcttcatctt cgggatattt ggttggatgt
     4081 acacgaatgt tgaatcattt cgcgttgatc atgtgagttt gccatgggta ccacagtggg
     4141 acatgaatgc tcgtgtgatg tggattttcc ctgcttgggt ctttgtttac atctgtctga
     4201 gcgcgccact cgggcgagtc cttgaccgtc atatccggtt aattcgatac cggactcatc
     4261 cgctcatggt tgctggagag aaggtcccgg aacctcttct tgcaatgcta aaggataatc
     4321 caaaggaaaa tgcatcttcg atgaaggtcc gtcagtcaca acgcgggggc cgtagaaaga
     4381 ggtcgaacaa ggaggaatcg ttgattccta agtcagcaaa cacaattctt tctccgaccg
     4441 ctgtacaggg ggagtgtcct gtgtgcaatt catctaacat cgctcgaggg aagggtggcc
     4501 gtcttcgttg caacgtctgt tgggagagct tccgatcctg aggctagggc atcatggtcc
     4561 gcattactgt cagtggattg ccgggctccg gcacctcgac tttggttcgg gggatatgtg
     4621 gatcactagg ttggtctgca ttgaacggtg gcgatgtatt tcgagaagag gcggcaagtc
     4681 gagggctttc tgtcgcggag ttttctcaac tttgcaaatc ggatcccgca gttgaccgag
     4741 agttggacag tcgtcttgtt gaagcgatgg aggacgtgag tggcccagag atagttgaat
     4801 caaggcttgc tggatggtgg gcgtatcgca ataacatcga ttgcttacgg atttgggttg
     4861 aagtggattt ggatgaacgt ctggatcgtg ttaccctgcg tgaaggcgac gatgtgagga
     4921 gacgtgagga atcgcttctt cgcgaggaag cagaccggca gcgttacacc gagttgtacg
     4981 gcatcgacat cttatccatg gaaccttatg accttgtaat cgatgggacg aagccctctg
     5041 cgacagatgt tcttcaagtc gttcttactg caatggggga tgcctcttga ccgtccgcgt
     5101 ccttgacagt ggggccacta ccgacgaagc aagtggggcg ccaatctggc agcgtcctat
     5161 cgaagagcgt atggattctg ggctcatact tatcgacaag ccccctggcc caacttctca
     5221 ccaagtagcg gcttgggcac gagatatcct tggggttgac cacctcgctc atggcggaac
     5281 tctcgatccg tttgcgacag gtgttttgac actcatgact ggtcgagcac gtcgattgac
     5341 ctcacaggtc cttggccatg ataaggaata cattggagtc ctcaaggttg gcggagatgc
     5401 tgacatggag gctttggctg cgcaggtgtc aaaacttcgt ggcgagattt acaacgtccc
     5461 acccacggaa tctgctgtca agattcaagt gcgaacccgt cggattaagg catttgaaat
     5521 tcttgacaca gatgaacgcc ttgccgttct tcgtgttgct tgtgcagccg gaacctacat
     5581 ccggacactt gcacgcgatc ttggattaat gatcgatgct ccaattcagt tgattgaact
     5641 tcgacgtaca cgctcaggtc gattcacaga ggatatgata atctcgatgg cagaacttac
     5701 tgatgcagtc catctgtgga agaagggagg cgatgcctca gccatgcttc gcatcgtttc
     5761 acccattgat gcactgttcg atgggagatc cggcctcgtc ctgaaagatg gagccgtagc
     5821 agcggtcgcc catggcgctg tattgactcg tccagggatt caagcaatca atggcgattt
     5881 tgagacaggt gatgacatcg tcctatggag tatgaagggg gaagtcgtcg ctgtggctaa
     5941 cgcctcgcgt agcacatctg agattccatc aattgagagt ggagaagtcg cacgacccca
     6001 cacggtgttg atgccgtcgg aaacctaccc acgtaagtgg cagggtggac cgaatcagat
     6061 caactcatag gcttcgtaga cccactcctc tgtttccact ctaacaagca gtttttgcat
     6121 cattcacaca cacccgccca tcgcccccga ggaggtcttg agcaggcccg ggtccgtact
     6181 tctggatatc aagattgacg gtgttttctg cattatccgc cctgcgccct tcgttcatca
     6241 cctgttcttg gggcgtctgg cgggtaagtt atgtgtgcgt tgaatttttc ttggtccaaa
     6301 catgtagagt gcaacggctc caccacctat cagaattgag agcatcatca taattgggaa
     6361 ggaatctgat tccgtgtcga ttgatgtcca ttcacctgga ttcgtctcca cttcagtaat
     6421 actgatggtg attgagcgct cgttgtttgt ctcatccgtt tcatcaatca agccattcga
     6481 atctgcagtg gcggagagca tgatgtcgcc atctccagag gctgaccagt tgcaaacaat
     6541 tgagtccaat cctccaggtt gaattgtagc gattgtgcca cttggcaagg aagcatcgcc
     6601 tgccttacac tctacatcga cgccattagc ttcaacgatg ccagtgttgc ggacccatac
     6661 tcgaatcgag atgacctgcc cttgttcgat agtgtatggc tcggtaaggg ctgtgttagc
     6721 gtgaattaga tcaatgctct cgacggctag atctggattt gaggtggcga tgacttcgat
     6781 ggtacgattt acagtagtag ttccgtcatc tacactcact tcgacgaacg tttgtccagt
     6841 ttcagatgga gcaaaggtca gagtccaaga atctgcatct gaccctgatt gggcaacggt
     6901 ggcccaggca gtatctgttg taacttgcag gttatcactg tcgatgtctg tgatggtcac
     6961 tgtgactaca tgtggtgtcc cgatttccat gtataatgag gttacaaatc ctgtcaataa
     7021 aggggcgtcg tccactgatt gaattgatac tggtagtgat tgagtccatt ggttacctcg
     7081 ttcgtcttca acgataattt ctacatccac attaccactc tgttcgacct gtggcacgag
     7141 gagtaactct ccattcacta cacttgaagc gagaattgta gcatcactcg aagatgcagt
     7201 gactgtgagg gagccgattg gggtgatgtc atcagtgcag tagaatctga aggggatgta
     7261 ccggccggga tcatcctcat cgaaggcttg agcatccaca gtttgacaga ttgggtcttg
     7321 atcgaactcg accacgtatg cgccactgat gcttatttcg ccaatgtcaa tctgcactga
     7381 tccaggatct ccacttgagg accactggaa gcgtgcccct attcctatga tgagggattc
     7441 tccatcggtt gcaaggaggt ggccaacaga ggtggacaca gttccgttgg atgcaacaat
     7501 tggaatctct tcgacaagta cgccccctaa tgcgaatcgc aaggtcgata ttgcgcccac
     7561 gagtccattt gtgtctcctg aaattgcata gtcaaaggtc aatgtagggt cattgatgtc
     7621 aattcttatt ccttcgacgc aaccgtcgag aatagttacg cgtatgtcga cacgatctac
     7681 atttagtggg atgagggcgc catcattcat cgaggtccaa ccagtttgtc cactctcacg
     7741 aatctggatg gatgcattgc catccatcga tagatgcact ctgccccatt gctggatata
     7801 gggtcgatca atgtctgata tggtccagat gcctgcagaa gacgatgatg gagtaaggcc
     7861 acaggaagcg attgtcaaat cgttagtcac tccatctaga gaattgaaat ccaatactgg
     7921 gaaatcaaga gatggcgttg tatgtaccgc tgtcgcagtt tcaaatgcgt accaaggtgc
     7981 tcgatgtcgt gtatgtacgg cgacggcatc gagctcaagc tgggaatcat cgaagttgtt
     8041 tacagaaacg tagtcgatga gaacatcgag attttcgata tcggaccatg tccatggttc
     8101 atcatcatcg ctgacctcga taaccaaggg tgaagatgcc gtgtatatgg tgggttggaa
     8161 tgtatggtga actgtatgaa tcagaacagg tccctctcct cgatcgataa tgaaattcac
     8221 ttcgtcgtct tggagcgtat ctggaatttc gaatacgaaa acaaggctca tgttcagtag
     8281 caggttgctt gttgtcgatc cg
//
LOCUS       DUKB01000092            2624 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_161401, whole genome shotgun sequence.
ACCESSION   DUKB01000092 DUKB01000000
VERSION     DUKB01000092.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_161401"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            100..1005
                     /locus_tag="HA345_03185"
     CDS             100..1005
                     /locus_tag="HA345_03185"
                     /inference="COORDINATES: protein motif:HMM:NF013827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HIH84394.1"
                     /translation="MEEVLFALWVAAIIGPLAWSWYHKASIAMAMTLSLLFGYIVQLI
                     WGWTLDSSQLSELYIRIVMIPALVEEGHVHTLITSGFVHSWNSPLHVLGNIVIIALVG
                     IPLEDRLGRGKWLISYAIGLLGGSIAWTLANGGSFTPALGASGAAFGILGAYLCGWPQ
                     DEVYFPIILIRKWPVQFIALFYFGFEIFKAWQVYGLSQVSHVAHIAHFGGFILAYATL
                     PILKRNIEWEGEIELEEIKTENPFEGVDDLVKRLHEEGDEKETRQAWLEEIADRAKCP
                     VCGGSLHLKKMRIRCESDSSHVAWP"
     gene            1077..>2624
                     /locus_tag="HA345_03190"
     CDS             1077..>2624
                     /locus_tag="HA345_03190"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84395.1"
                     /translation="MRGIKALLLATVFLIADMSAFASAIPTQTEETIEEIADRTPFRG
                     DKHATEDYGWWFAYGPDSNFDGMDDRLEQIIAGEDSQSTTAIIGADGRTTVAIVIDYA
                     WHPGQEEIDDLVALLRSHGWDADGSWFQVMDSIDSIVVDHVPVSALLEIHAIESVVVV
                     EMQNVMYPTLESANPASRIQPSDVYAGTVYDRGYDGEGIVIAVLDSGVDNEHRSLNDF
                     DDQNDEPDLDPNSYDDQKWVAGYDATSQAANPDGSQDPDDGQGHGTHVAGIALGTGDS
                     SRVHIGAAPGAFLVDIKVLTDSGGTNSQNSLNGIQWMINNKDTDWGNGAKGIDIGQMS
                     FGSIGNPINQDNGDNGTGAEARLVNNATYDHDISCIIAAGNDGMRRIASPGSADGAIT
                     IGSADNADSINRTDDFMASYSNTGPRESDNDEDDWDELKPDLVAFGSGIYSASAATGT
                     SFPGTPRPEADSSYESKDGTSMATPLVSGVVALMLQADSSLKPTEIKDILRNSSEKKG
                     SASEPSVS"
BASE COUNT          724 a          559 c          655 g          686 t
ORIGIN      
        1 ccggcctcga aggacggtga cttcagataa ctcgatgatg cccatcaaga tgagcgaaca
       61 accgcattgc cttcaagccg acgcctcctc cgcctgtaca tggaggaggt attgttcgca
      121 ctttgggtgg cggctattat tggtcctcta gcctggtctt ggtatcacaa agcatccatc
      181 gcgatggcta tgactctatc cttactcttt ggctacattg tccagctgat ttggggttgg
      241 actctcgatt cttcacaatt aagcgaactc tacattcgaa ttgtaatgat accagcgctg
      301 gtagaagagg gccatgttca tactttgatt accagtggtt ttgttcactc ttggaattct
      361 ccgctacacg tactgggaaa tatcgtaatt attgcattgg ttggaatccc acttgaggac
      421 cgtttaggac gaggtaaatg gctgatttca tacgctatcg gattacttgg aggttccata
      481 gcttggactc ttgctaatgg gggctctttc actccagcct taggagcttc aggtgcggcg
      541 tttggaatac tcggtgccta cctctgtggc tggcctcaag atgaggtgta ttttcctata
      601 attttgataa gaaaatggcc tgtacaattc atcgctttat tctactttgg atttgaaatt
      661 ttcaaggctt ggcaagtata tggtttgtcg caggttagtc atgttgcaca catcgctcac
      721 ttcggaggtt tcatactcgc atacgcaaca ttaccgattc tgaaaagaaa catagaatgg
      781 gaaggcgaaa tcgagttaga agaaataaaa accgaaaatc cattcgaggg cgtagatgat
      841 ttagtgaaac gtctgcatga agaaggagac gaaaaagaga cacgtcaagc ctggttggag
      901 gaaattgcag atagggcaaa atgtccagtt tgtggaggtt ctctccatct caaaaaaatg
      961 cgaattagat gtgaatctga ctcttcccat gttgcttggc cttgagtccc gaagggactc
     1021 gtaatcaccc aaggttcatg tgtgatgtaa ttcgcccgta gggcgggttg agtcacatga
     1081 gaggaatcaa agcactgctt cttgctacag tttttcttat tgcggatatg tctgcattcg
     1141 cttctgcaat acctactcaa accgaagaaa ccatcgaaga aatcgccgac agaactccat
     1201 tccgaggcga caaacatgca accgaagatt atggttggtg gtttgcatat ggcccagatt
     1261 caaattttga cggaatggat gaccgccttg agcaaattat cgccggcgaa gattctcaat
     1321 ccaccactgc cattatcgga gcagatggaa gaacgactgt ggcaatagtg atcgattatg
     1381 catggcaccc aggtcaagaa gaaatcgatg atttggtagc actcttacgg agccacggat
     1441 gggatgcaga cggttcttgg ttccaagtta tggattcgat tgactcaatt gttgtggatc
     1501 atgttccagt aagtgctcta cttgaaatcc atgcgattga atctgtagtg gttgtcgaga
     1561 tgcagaacgt catgtatcct acactggaaa gtgcaaatcc tgcaagtcga atccaaccct
     1621 cggatgtata cgctggaacc gtttacgata gaggatatga cggggagggg attgtaatcg
     1681 ctgtgctgga tagcggtgta gataatgagc atcgttctct gaatgatttc gatgaccaaa
     1741 acgacgagcc agatttagat ccgaattcat acgacgacca gaaatgggtt gcaggatatg
     1801 atgcaacgtc tcaagcagcc aatcccgatg gttctcaaga cccggatgac gggcaagggc
     1861 atggcactca cgttgcgggt atcgctctcg ggacaggaga ttcttcacga gttcacattg
     1921 gtgcagctcc cggtgctttc cttgtcgata tcaaggttct aaccgatagc ggaggtacaa
     1981 attctcaaaa ttctttgaac ggaatccagt ggatgattaa caacaaagac actgattggg
     2041 gcaatggcgc caagggaata gatatcgggc agatgtcatt tggatcaatt ggcaatccaa
     2101 tcaatcaaga caatggagac aacggtacag gggctgaagc acgactggtt aacaatgcaa
     2161 catacgacca tgatatctca tgtattatcg cagcaggtaa cgatggtatg cgaagaatcg
     2221 catctcctgg aagtgccgat ggtgcgatta caattggttc agcagacaat gcggattcaa
     2281 tcaacagaac agatgacttc atggcttctt attccaatac agggcccaga gaaagtgaca
     2341 atgatgaaga tgattgggat gaactaaaac cagacctggt cgctttcggt agtggaattt
     2401 attctgcctc ggcggcgacg ggtacatcat tcccaggaac gcctcgtcca gaggctgaca
     2461 gttcctatga atccaaagat ggtacctcta tggcaactcc actagtctca ggagttgtag
     2521 cactgatgct acaggcagat tccagtttga aaccaactga aatcaaagat attcttagaa
     2581 attcaagcga aaagaagggt agcgcttcag aaccaagtgt ttcg
//
LOCUS       DUKB01000093            6989 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_37105, whole genome shotgun sequence.
ACCESSION   DUKB01000093 DUKB01000000
VERSION     DUKB01000093.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6989)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6989)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6989
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_37105"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>260
                     /locus_tag="HA345_03195"
     CDS             <1..>260
                     /locus_tag="HA345_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84396.1"
                     /translation="LVGCEDSDSDGYADIIDGNSTIPGGWALDARLWSDGDDDGFADQ
                     QGTEMSDDCPLVPGNSSLFTLGCPDTDGDGWADIVDPDDDND"
     assembly_gap    261..567
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <568..1139
                     /locus_tag="HA345_03200"
     CDS             <568..1139
                     /locus_tag="HA345_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84397.1"
                     /translation="DPDDDNDGYYDVDEFADGSDPYDATSQPVDLDGDNTPDRLQQEA
                     GLDPVIQSALSVAILAIIAIGAGMSVLIWRSATSRRSNYEKIRSLLDEAEGFEGLMAV
                     EKDIESMSDKNGIDAGQTALLFDRLGDRRYKLEEEMRAAQQAEWWAQQQAHGQQWAEW
                     QQQQQGWGQQQGWDQQQGWDQQQGWDQQG"
     gene            1196..2512
                     /locus_tag="HA345_03205"
     CDS             1196..2512
                     /locus_tag="HA345_03205"
                     /inference="COORDINATES: protein motif:HMM:NF014069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HIH84398.1"
                     /translation="MKVINDTIHGSFEIDGVREELLATPEFNKLSHIKQLGLAHLVFP
                     GAHHTRFEHSLGVSHLAGRMASSLDLDPHERMTVEVAGMLHDVGHGPYSHTLEHILHE
                     RGGADHMHITEGIITGDYEVLSDDEQKILGSRRTIPEILESHGIDPDKVASLIHGPDA
                     GGKERNLFHWGEGAEAFESADHTLAHLVHGPVDCDQMDYLLRDAHFTGVRHGIIDHDR
                     LIQCLTRHRGDIAVTEGGLAALEGMMTARALMYSAVYFHRVTRITEVMLSRAVERAGD
                     RLPEARQMQRMVDAEVWHALDQADPFSRDILKRLKYRRLMKNSVTRRMDELTSEQINR
                     LVHLATHSEDRIQIEDQIAQRAGLDPGYVAIDVPSVKLLLSEPRMAAVDVRVVGKDGR
                     TRWFKEHTPIADALRKRQVSQHAMSVITLPEAVKDVAAIAERIIYD"
     gene            2613..3977
                     /gene="gdhA"
                     /locus_tag="HA345_03210"
     CDS             2613..3977
                     /gene="gdhA"
                     /locus_tag="HA345_03210"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013750796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HIH84399.1"
                     /translation="MHSHLKQVYENVKKRDPDQPEFHQAVLEVLESLTPIVDERPEFL
                     SANIYNRVVEPERLIQFRVPWVDDEGNMQVNRGFRVQFNGAIGPYKGGFRFHPSVNAS
                     ILKFLGFEQIFKNSLTGLPMGGGKGGSDFNPKGKSDNEIMRFCQAFIGELWRHIGPDT
                     DVPAGDIGVGGREIGYMFGMYKKMANEWSGVLTGKGLPYGGSLIRPEATGYGCVYFVR
                     EMLATKGETMEGKRVAISGSGNVAQFAAEKVLDLGGIPVTMSDSSGFIHDSVGITREK
                     LAWVMDLKNERRGRIKEYADHFDGVEYHESKPEPAMNGLWSVDVDVALPCATQNELNG
                     EEAAALVANSVMAVGEGANMPCTPEAVEAFQKAGVLFAPGKASNAGGVATSGLEMSQN
                     SLRMSWTREEVDEKLDGIMVGIHKAAYETAEKYGRPHDYVFGANVAGFLKVAEAMLAQ
                     GSWG"
     gene            complement(3979..5199)
                     /locus_tag="HA345_03215"
     CDS             complement(3979..5199)
                     /locus_tag="HA345_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84400.1"
                     /translation="MAFLDFFGTPEELRWFAIIFFGSLIPATGIAGILHRRNPLPLPG
                     QRGYDFVVLGLGLWCMTGLLIDVWAHTNGEVDDSFFTKWHAVWYSGATAYSAFILFAL
                     WRLAEAPPKITPSGLWGFATNVPKGYGASVAGIAIFGFSGFADMLWHSFFGIEGGLDI
                     LLSPSHLGLLIGLILTVMAPVFSGWQDPLSGKDGLTSQLVLIFGLVAAWVPILLITGQ
                     WDIFQLEIADYCYLGNNCGPGYEDSLAIGVVASMVPTTIATGLILTFARRWTPAPGAM
                     LVLFLFWGMSNYAMENLDTSYIYYGFIIGILVEILSHFFLRKHRPIAFAITLPIVMLG
                     TKMLAAVTTVSQGSQWVITAHGEVFIQPYGWTIHATSGSIIISCVMCALLAAAMHPPV
                     VPDGPNMVDEDTGE"
     gene            complement(5209..6774)
                     /locus_tag="HA345_03220"
     CDS             complement(5209..6774)
                     /locus_tag="HA345_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84401.1"
                     /translation="MDWDGCGDPLTPCEEAASLNNNWPIWTVSGPPYDVGDVVSYANE
                     FYISIRPQNTLEPGPLGVQALAWIECTCDDIKSQLPDYQSANSYSEFDGVVYNNEVYW
                     AISSVPAGTSPGPNQYWRTCDWCDSSNNNLEGEWDINTAISANYMIGDLVTQNGVIWV
                     SIMNHNPTVPSGGVVSGLGSTIFTIMWDVGWVQCDCNEVATTYDSTVTYQEGDIVVGP
                     DSNTWISEYSNNNIWPSIEINLPWMVVTIPTWRMCSPSDCNNAQPWSQLTANLGGYFS
                     GDIVSHVGNTWQLMSGYSGSSIAPSVSMNMNPGPWTPCNPVAVPGGPVSMYIISQGEV
                     NIETKNIQSITRNTADTDDEIVGPEPGTKFSSALDPWLETNFESAILLKDDITEIEDS
                     SLENLVENRTLIVDVCDPKYNLNSYNDQRYLCGFWYEDSGVNAKGENTSTIILGPTLL
                     CPVDMPECHDIILKIDVEAVVSDEAVVIDSNEESTEVVSDDSTNDTRVPGFSAIMLVM
                     CMIFSAVVISRRP"
BASE COUNT         1750 a         1534 c         1682 g         1716 t
ORIGIN      
        1 ggctagtcgg ttgtgaagac agtgattcgg acggatatgc cgacatcatc gatggtaact
       61 caacaatccc tggtggctgg gctctcgatg ctcgtctttg gtctgatgga gatgatgatg
      121 gcttcgctga ccaacagggt acggaaatgt ctgatgattg ccccctcgta ccaggtaatt
      181 caagcctctt cacattgggt tgccctgata cggatggcga tggttgggcc gacatagttg
      241 atcctgatga tgacaacgat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnttg atcctgatga tgacaacgat ggctactatg
      601 atgtagatga gttcgcagat ggttcggatc cctacgatgc gacgagtcaa ccagttgatc
      661 ttgacgggga caatacccct gatcgactac agcaggaggc ggggcttgat cctgtgattc
      721 agtccgcact ttcggttgct attctcgcga ttattgcgat cggagcaggc atgtcggtac
      781 ttatctggcg ctctgcgaca agtcgacgtt ctaactacga aaagatcagg tccctattgg
      841 acgaggcaga gggctttgag ggccttatgg cggtagagaa ggacatcgaa tcaatgtcgg
      901 ataagaatgg tattgatgca ggccaaactg ctcttctatt cgatcgcctt ggtgatcgcc
      961 gctacaagct cgaggaggag atgcgtgcgg cacaacaggc tgaatggtgg gcgcagcagc
     1021 aggctcatgg tcaacagtgg gctgagtggc agcagcagca gcagggttgg ggtcaacagc
     1081 agggttggga tcaacagcag ggttgggacc aacagcaggg ttgggaccag caaggctgag
     1141 aatccgtatt tctcaagcgc agcattgatg acgagtgtgc aaggctccac ctacaatgaa
     1201 ggtcatcaat gacaccatcc atggctcctt cgagattgat ggagttcgag aggaacttct
     1261 cgctacgcca gagttcaata aactcagcca tatcaagcaa ctaggtcttg cccaccttgt
     1321 tttcccaggt gcgcatcata cgcgatttga gcattctcta ggcgtatctc accttgccgg
     1381 aagaatggct tcaagcctcg acctcgatcc acatgagcgg atgactgtag aggttgcagg
     1441 aatgcttcat gacgtggggc acggtcccta ttcacatact ctggaacata tccttcatga
     1501 gcgcggtggc gccgatcata tgcatatcac agagggtatc atcacagggg attacgaggt
     1561 cctttcggat gatgagcaga agatccttgg ttcgcgtcgg accattcctg agattcttga
     1621 atcacatggt attgatccgg acaaggtagc atcactaatc catggtccag atgcaggtgg
     1681 taaggagagg aatctgttcc attggggtga aggtgctgaa gccttcgaat ccgcagatca
     1741 cactctagcg catcttgtcc acgggccagt tgactgtgac cagatggatt acctacttcg
     1801 agatgcacat tttacagggg tgcgtcacgg aattatcgat catgaccgtc ttatccaatg
     1861 tctcacgcgt cacagggggg atatcgctgt gactgagggc ggactcgccg ctcttgaggg
     1921 tatgatgact gcccgagctc tgatgtacag cgccgtatac ttccatcgag tcactcggat
     1981 aacagaggtg atgctttccc gtgcagttga gcgcgcagga gatcgtttac ctgaagcgag
     2041 acagatgcaa cgaatggtcg atgcagaggt atggcacgct cttgaccagg cagatccttt
     2101 ctcacgagac attctgaagc gtctgaagta tcgtcgtctg atgaagaata gtgtcacacg
     2161 ccggatggat gaattgacat ccgagcagat caatcgttta gttcatctcg cgacacattc
     2221 agaggatcga atccagattg aggatcagat agcacagcga gcaggcctcg atccaggtta
     2281 tgtcgcgata gatgtcccgt ctgtcaaact ccttctatct gaaccacgta tggcagcagt
     2341 ggatgttcgt gtggtaggta aggatggccg tacgcgttgg ttcaaggaac acactccaat
     2401 cgctgatgca ttgagaaaac gccaagttag tcagcatgcg atgtcagtca tcactctacc
     2461 tgaagcggtc aaagatgtcg cagcgattgc tgagcgtatc atttacgatt gattcatctt
     2521 ttttagttcc gatttcagta ttggcactcg ttaataagcc ggatatccgg tcgcgaggtc
     2581 aaccaaggtg aattagccta ggagttgaag ggatgcacag ccacctgaag caagtttacg
     2641 agaatgtgaa gaagagagac ccagaccagc cagagttcca tcaggcagtg cttgaggtgc
     2701 tagaaagttt gacacctatt gtggatgaac gccctgaatt cctatctgct aacatctaca
     2761 atcgtgtagt tgagcccgag cgtctaattc agttccgagt cccatgggtc gatgatgagg
     2821 gcaacatgca ggtgaatcgt ggtttccgag tccagttcaa cggtgcgatt gggccctaca
     2881 agggaggatt tcgattccat ccttctgtca acgcttcgat tctcaagttc cttggctttg
     2941 agcagatttt caagaatagc ctaaccggtc ttccaatggg cggtggaaaa ggtggttcag
     3001 acttcaaccc taaggggaag tcagacaatg aaatcatgcg tttttgtcaa gctttcatcg
     3061 gcgagctatg gcgccatatc ggccctgaca cggatgttcc agcaggcgat attggcgtag
     3121 gtggtcgtga gattggttat atgttcggca tgtacaagaa aatggctaac gagtggtctg
     3181 gtgttcttac tggaaaggga ctaccttacg gtggttctct gattcgtcca gaggcaactg
     3241 gctatggttg cgtttacttt gttcgtgaga tgcttgcgac gaagggtgaa accatggagg
     3301 ggaagcgtgt tgctatttct ggaagtggta acgtggctca gttcgccgcc gagaaggtcc
     3361 tagacctagg tggaataccc gttacaatgt cagattctag tggcttcatt catgactctg
     3421 taggcattac acgtgagaaa cttgcatggg taatggatct caagaacgag cgccgtggca
     3481 gaattaagga atatgccgat cacttcgacg gtgtagaata ccacgagtcc aagcctgagc
     3541 cggcaatgaa cggactttgg tcggttgacg tcgatgttgc actcccatgt gcaactcaga
     3601 acgaactcaa tggtgaggag gccgcagctc tagtggccaa cagtgtcatg gccgtgggcg
     3661 agggtgctaa catgccctgc acccctgagg cagtcgaggc tttccagaag gcaggtgtcc
     3721 tttttgctcc cggaaaggca tctaacgctg gtggcgtcgc tacttccgga cttgagatgt
     3781 cccagaactc cttgcgaatg tcttggacta gggaagaggt tgacgagaag ctcgacggca
     3841 tcatggtcgg gattcacaag gctgcttacg agaccgccga gaagtatggt cgaccacatg
     3901 actacgtgtt tggcgcaaat gtagcgggct tcctgaaggt cgccgaggct atgcttgccc
     3961 agggctcttg gggctgaatc actcgcctgt atcttcgtcg accatattcg gaccgtcagg
     4021 tacaaccggc ggatgcatgg cagcagcgag tagtgcgcac attacacatg agatgatgat
     4081 tgatccacta gttgcgtgta ttgtccaccc atacggttga atgaatacct ccccatgagc
     4141 agtgattacc cattgcgaac cttgtgatac tgtggtaaca gcagccaaca tcttggtgcc
     4201 tagcattact attggtaacg taatagcgaa tgcgattggt cgatgctttc tcaaaaagaa
     4261 gtggctgagt atctctacta gaattccaat tatgaatccg taatagatgt aagaggtatc
     4321 gagattctcc atcgcgtaat tgctcatgcc ccagaacaag aagagaacca gcattgcacc
     4381 tggagccggt gtccagcggc gagcgaaagt tagaatcagt ccagtcgcaa tagtggtcgg
     4441 aaccatcgat gcaactacgc cgatagcgag gctatcttcg taccctgggc cacaattgtt
     4501 acccaagtag cagtaatctg caatctcaag ttggaaaata tcccactgtc ctgtgattag
     4561 aaggatgggc acccatgctg caactagtcc gaagattagc acaagttgac tagtcagtcc
     4621 atccttgcct gagagtggat cttgccatcc agagaataca ggtgccatga cagtgaggat
     4681 tagcccgatt aagagaccaa ggtgagaggg agagagcaga atgtcgagcc ccccttcaat
     4741 tccgaagaat gagtgccaga gcatatctgc gaaaccagaa aatccaaaga ttgcaatccc
     4801 tgctacagat gccccgtaac ccttggggac attagttgca aatccccaga gtcccgatgg
     4861 ggtgattttt ggcggggctt cggcgagtcg ccatagtgcg aatagaatga atgcggaata
     4921 tgcagtggca ccggagtacc atactgcatg ccattttgtg aagaatgagt catccacttc
     4981 accattggta tgggcccaga cgtcaatgag cagtccggtc atacaccaga gtccaagtcc
     5041 taggacaacg aaatcataac cgcgttgacc aggtaatgga agtggatttc ttcgatgaag
     5101 aattccagca attccagttg caggaatcaa tgatccaaag aagattattg cgaaccatcg
     5161 aagttcttct ggtgtcccaa agaagtcaag aaaagccaca acttctactc aaggtctacg
     5221 tgatataacc actgctgaga aaatcataca catgaccaac ataatcgctg aaaatcctgg
     5281 aactcgtgtg tcgtttgtgg aatcatccga tacaacctct gtagattctt cgtttgaatc
     5341 aatcactacg gcctcatcac tcaccactgc ctcaacatcg atcttcaaaa taatatcatg
     5401 acattctggc atatctacag gacacaataa tgtaggccca agaataatcg tcgaagtatt
     5461 ttcacctttt gcattaactc ctgaatcttc gtaccaaaaa ccacacaggt atctttggtc
     5521 gttgtagcta ttcaagttgt attttggatc gcatacatca acgattagtg tgcggttctc
     5581 aactaaattt tctaaacttg aatcttcgat ttctgtgatg tcatctttca acaaaatggc
     5641 ggattcaaaa tttgtctcta accacggatc aagggctgat gaaaatttag tacccggttc
     5701 aggaccaact atctcatcat cagtgtctgc agtattacga gtaatgcttt ggatgttttt
     5761 ggtttcaata ttaacttcac cttgggaaat tatgtacatt gaaacaggtc ctcctgggac
     5821 tgctactgga ttacaaggag tccaagggcc gggattcatg ttcattgaaa cactaggagc
     5881 aattgatgat cctgaataac ctgacatcaa ttgccaagta tttccaacat gtgatacgat
     5941 atcgccagaa aaatatcctc ctaaattggc agttaattga ctccatggtt gtgcattatt
     6001 acaatcacta ggtgagcaca tacgccaagt ggggattgtg acaaccatcc acgggagatt
     6061 tatttcgata gatggccaga tattgttatt tgagtactct gaaatccatg tgttgctgtc
     6121 tggtccaaca acaatatctc cttcttggta agttactgtt gaatcatatg tagtcgccac
     6181 ttcattgcaa tcacattgaa cccatccgac gtcccacata attgtgaata tggtggagcc
     6241 caacccactt accactcctc cgctaggaac tgtggggtta tgattcatga tagataccca
     6301 aatcactcca ttttgtgtaa ccaaatcacc aatcatgtag ttggccgaaa ttgctgtatt
     6361 tatgtcccat tctccttcta aattattatt cgatgaatca caccaatcgc atgttcgcca
     6421 atattgatta gggccaggag atgtccctgc aggaactgac gaaattgccc agtatacttc
     6481 gttgttgtat acgactccat cgaattcaga gtatgaattg gcactttgat aatcaggtaa
     6541 ttgggacttg atatcatcac aagtacattc gatccatgct aatgcttgaa caccaagtgg
     6601 accgggttca agtgtatttt gtggccttat tgaaatatag aattcattgg cgtatgatac
     6661 aacatctcct acgtcgtatg gagggcctga gacagtccat attggccaat tattgttcaa
     6721 agaagctgct tcttcacacg gagtcaatgg atctccacaa ccatcccaat ccatactaaa
     6781 ttcgggactc attccaccta gaatatttgc aacatttgga ctccataaat cccccgaacc
     6841 cgtggggctt tctatgattt cgaattgtga atatacttgg gtagaatccc atgttggttg
     6901 cccattaaaa ttccaaattt cagtacaatt gcagtcgaga tcccaaatgt ctggattagt
     6961 acctggatca gccgccgtaa aaccaggag
//
LOCUS       DUKB01000094           14964 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_33018, whole genome shotgun sequence.
ACCESSION   DUKB01000094 DUKB01000000
VERSION     DUKB01000094.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 14964)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 14964)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14964
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_33018"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..578)
                     /locus_tag="HA345_03225"
     CDS             complement(<1..578)
                     /locus_tag="HA345_03225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84402.1"
                     /translation="MNIVRNSVQAEGDEQMCAVFVTLDPILDVDPLKFADWCASEPTE
                     PSLAPTSIERRWAHHVGKSTLDAANLLFVLLIDQDDTGRLRPPLDETRISREAFGRMP
                     NEETSLEYMIQNVLPTEDNQRVTELLFALNHRFDDHPCNTGDGGMILRGALSATEVVD
                     LRTSLQGGGPRIHKDEPFDGAVTDLVRLLVLHL"
     gene            complement(538..6282)
                     /locus_tag="HA345_03230"
     CDS             complement(538..6282)
                     /locus_tag="HA345_03230"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019325.1,HMM:NF022100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84403.1"
                     /translation="MSPHRVPTIGIVLLFLMSTGSALVTPSPLTLAEPSDNSLRNTQP
                     WTDDSPWGQYLGEADRRQTPPDHSPNGGAGAGSPSAATVLGSVLDPVVNWKFTDDTIG
                     TTSLSTAIGDFSDSINRPEAYSESCGGDSLFPVIIQEQDIAGTQHSFLRIIEGEDANL
                     AWTVDLGPTRPMKIGPIVADMNDDGKPEILVMFDSQGTLNVEMWSPTLTCTPTGWSSG
                     GSHSSEQLWTWTDEGLSLEHPVGANVGWPSDHHPTAQPVVADLDLDGNPEVAIAAISE
                     ATETPVILSISLPMTGSPEENWRAEIQEGSHPSDLTFAQLSENTASVFLTSIEENDGL
                     MWAWRLDGATGASEWSGGASLGNLDGGSSNAPQIRLPGPIVAQLDSDNAPELILTIPT
                     DAGGNGPVDGAEFIAIEATNAAEIWSFNAYDGYADAPPVVYDADGDGVDDRVCWITWR
                     SNTGSRDGLTGCTNVESTPIERWRRTLEASSGTLNDEIAVAPPFWMDIDGVGEPELMV
                     PYGQSLHAFDGDDGTSAAVSLNWSNEMELETRTWAAAALADIDGDAMMDIIIGDLVIS
                     HGAADVRPFVDDGGIEFDPPEPDPGEMTTVTAFIENVGTVATDGPVDVVLYADGIEIG
                     RERIPALEPANPSGTGTFDRISVDWSGDLGNHTFSVIIDPLGNLTETRVDNNQQNRTL
                     EVMEPFSASVGIQGGLVRVNPGASEDVTLTITNIGKNTSTWSIEIDSTNLPENWTVVP
                     LDTMTNEELDSNEEWNPRLRITAPASALGSDSGTVNLRLTIAEDTSLEVLATVPVEAN
                     RTRGISLRGPMETSSTMGWGIPGGIAYSWILIENLGNAVETSTGLTFGSTGWGNGMEL
                     KDPEQNWNSISSLTLQPGEVKHLSLAISVPSNANLGESENSDFEICIGSGEQRECETI
                     LVTFVASQIAARPSHDRVQPVESGPEIEWVIEGILNPGDQEMEWDLYAAGLASQSGWL
                     LSGSGDLSVESDRLYARSSNGSFNGSLFVDLPPTAPPLIHTFSTQEGNDTSADLNLSL
                     NVLQVHRATISNPSNPTGEFTGKTYIQTSTPIDTILSFQNHGNGVDEYQIIGTVDIDG
                     NLSNSENITIQFPVNTLTLQPGVSTSIPATINAPSGTPARIPFTVNFEMISLGDTSVI
                     GTTQILYEVQQDHAWNYSAPDPSMPLHTDETDRRIIALPGDTVSIPVMIENIGNYDDQ
                     INLSGEGVLQSVPGDPASSWTIEGASSPILDVGENSTLLLNISIPEDAWNGSMMTIDW
                     TALAGDIQILEGPSHRIEVGHAPSWSIVATGIDLDIAPEGEIIELSVVQNGNLPAEPY
                     ANTFVKGVLGWNVSVLEMPGVLSPGESGQMRLNITPPEATIAGAAVELNIILRNADGS
                     GTSTTTLPIRVDAVHNHILDGDTDWIITQDGGMPLLWIRNLGNSPTTIDIEVQGTGAG
                     WSVEHPESIHLAIGEIRGVPIDLTPPNVTGTMPTITVITTDDGDNQREFALDPVITTR
                     SWATTPVIVGMESDLWMMSFYGSSTSETVRIGTSGPLPTSDSGWMYTIGLPGSITATI
                     SGESLDGMAFSTQASERSAICSSNLNGTSIESVCTIVNGTESYGYTMLVIDDSGALLA
                     SFASEIPAGEGGSIHLNSTWEPTVGHHSITVILRDAQGRLIDEDVDEHVIRNTDWNIG
                     ISSFTSSGVGSSQTLRLTTTRSIELPEAVCSVTYTTSTGTWSLIQSIDMGGLINPSVE
                     IERPIEIEDGEQITAELACAAPWDIDSTPNDDEKSFTLTDGQGVIEASSDTIFAAITA
                     AIVLVTLWFVGFVRPDTLPNRKPQKKNGKTQSSEKKGVVKESNVDMEEEDEDDSIQIE
                     GSDEESENTSSDRTPEEAEDEIQIIDEVEEIVEVATAEPTELERRLEGVTDPFERKII
                     ELEYRKEQRSSRRR"
     gene            6550..7107
                     /locus_tag="HA345_03235"
     CDS             6550..7107
                     /locus_tag="HA345_03235"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF006333.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HIH84404.1"
                     /translation="MYYIVDKEDTIRIPPEYMQLGDALEETINILALNAFEGRYDQKT
                     EDFILLTFDHEVLGRGRVIHGDGAIYQNVRYKALMFSMDQSEVVDGKVQKVNDFGAFV
                     LIGPVEALLHKSQIFEEPVNVELGQGIARIVGSQSGRNISENTHIRARIVSKSINHND
                     PRSSKIGLNCKQPGLGAFEWLKEDA"
     gene            7109..7327
                     /locus_tag="HA345_03240"
     CDS             7109..7327
                     /locus_tag="HA345_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014052140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit E''"
                     /protein_id="HIH84405.1"
                     /translation="MVSKSYACGECNMILPDPEKKNEIPQCPYSPSAPVSNDWQGLVI
                     IMNPETSEVGKRMGVTRPGSYALKVNIR"
     gene            7338..7706
                     /locus_tag="HA345_03245"
     CDS             7338..7706
                     /locus_tag="HA345_03245"
                     /inference="COORDINATES: protein motif:HMM:NF013450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84406.1"
                     /translation="MNIDQRIENPILQRVELHFTMEHPAAPTPSLKEMIDFITKMEPG
                     SKKECTFILDVTSRFGRSMTTGVAHVYENDEAAATTVPNFVKDRHVRRGAHAEAAAEP
                     QVEEAVPEEESNEEESEEGA"
     gene            7706..7915
                     /locus_tag="HA345_03250"
     CDS             7706..7915
                     /locus_tag="HA345_03250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013906060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27ae"
                     /protein_id="HIH84407.1"
                     /translation="MGEKWRKSKVSKYDMSSGELVRKGEFCPRCGPGVFLAVHADRTS
                     CGRCGYRSGQNKAAPPESADSSEEE"
     gene            complement(7917..8831)
                     /locus_tag="HA345_03255"
     CDS             complement(7917..8831)
                     /locus_tag="HA345_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84408.1"
                     /translation="MTEEAAGPILHCFGKNQAMAALLMDDSIQRWDITGRKFLPPVLP
                     LPTEVAEIAIHDNLAIVSWIDRELRVSRIAGYSMEDEWHPAFADKGEYRNAVSTNQDI
                     HAPGSLWNHGMSAEILAMDIDETAAVFVAMNRGVYLIDPLTSNEIWRSEIPEWSPPWE
                     GAKVESYTLSVHLGENQIHIFDDRGAWACLERSDGSHTEQGRLPFRGKTTGVWKGKSG
                     WAITESGNKIHILSPEFTLLETKDVPGPVRHAIELESEWYWTGWRHDGGPNGVITRPE
                     HGVWQIMIDKKIRVLCNDGQWSNHGLTV"
     gene            8913..9896
                     /locus_tag="HA345_03260"
     CDS             8913..9896
                     /locus_tag="HA345_03260"
                     /inference="COORDINATES: protein motif:HMM:NF016312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84409.1"
                     /translation="MATVSLLVVSESDIGSTVQGCALLARGGWDEHAAVDGGRVWRHR
                     SGRVDLWWRDQPHLYSDYLDKQYEMETSRSLSEVLFLSRHVAASGRPSLTLHAIGIPG
                     ASPHGEAAEYGGRNGMTVPPSPRFASIFRRLDQIANRTDIIEEFEITLETTHHGPILD
                     TPTLFIEIGSTEEHWGRQDAAEVWADVLAGEFEFEEELEITEAKEIAFIGLGGGHYAP
                     RHQAILRATSAHCGHLLASYSLPFILPSQPDWDPLTGSLPEGSWKGAIDVCLKQTQDV
                     FPNSKIVAHLDRKSFKGWQRQSIRRHLEAKGIPLFRQADFLEFDKLKRESS"
     gene            9919..10893
                     /locus_tag="HA345_03265"
     CDS             9919..10893
                     /locus_tag="HA345_03265"
                     /inference="COORDINATES: protein motif:HMM:NF013761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84410.1"
                     /translation="MGLLGRAVVTVLPLMPRFMVGWVSRRYHAGEDISAAVKTMRRLE
                     GEGACFTIDVLGEEITTMEEAAFFVEEYGRVLEAIIETGIDANLSLKPTAFGLLIDPT
                     IAEGSIEKLVRKAAGNDIFVRLDMEDHRVTQPTIDLVARMHDRGLSNIGTVLQGRLHR
                     TLGDIEKISEILGSAADHRICKGIYLEPENIAFTGRSDITSATNQAIDAALDCGAYVG
                     IASHDTNIVKHSLTALEDRGMGPGIPDPRELAGPQRPGKGPGYEFQMLLGVRGDIRRR
                     LAKQGHRTRVYLPYGSKWYEYGVRRLRENPDVAWHITKALFFPWSNRR"
     gene            complement(10894..11538)
                     /locus_tag="HA345_03270"
     CDS             complement(10894..11538)
                     /locus_tag="HA345_03270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84411.1"
                     /translation="MEDATHDTDAEDEELVHVEECPSCGTEEVHEILSEKEVGGGADY
                     RVRCETCSHVHLIHVRPPKAVIVQFTLSDGAHSSNEEIEVDEDEVIHIGDVFDHAQML
                     WRVQTLHLKQEQSVRYADPVSIVSAWAVRCDLVRIKVTMTRGEDSASSIIESDPDTVF
                     SCGTIIEHEGEKWRIRAIHTGIGRTLTGRREAAEIRRLFLHPPPVPRDRRWQRD"
     gene            11617..12369
                     /locus_tag="HA345_03275"
     CDS             11617..12369
                     /locus_tag="HA345_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84412.1"
                     /translation="MDGGLPQFSQEEIMTALLAGSERGGEEPEIAANITQQMLHMELE
                     PLSRSMRARLRDIVVRLEPDHFIEVGAGIGQLSAWFHDAWESGGHPKSYAMVEEGQRF
                     GVILQRVVERFSAADWCNVRVGPWDTMVSESIAWLAANASMPEEARSGSILPVPADVV
                     LVNTDWRSQVKDVEDAFQLLRPGGVLLTPEPLVPSSDVGDYPEGEPQNDAQIRVEVFN
                     HWIRLIQRWSTEHAVGIAEVTAGSVVAIRRLK"
     gene            complement(12370..13692)
                     /locus_tag="HA345_03280"
     CDS             complement(12370..13692)
                     /locus_tag="HA345_03280"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84413.1"
                     /translation="MNSDEEDVIDSILEQTVPSNLEEHFVSSLANSESIEDELSDSQK
                     GEGRIDLLPKKILDEAEIWLMPWWLPPINWLRKPKVILASIMIILASSLIVLFPEGEI
                     ILLGPPQELIDWQEDHELMTGLDSFVGWDGSSVDVCIVDTGIDLAHPDLSKVTLAGWT
                     DVINQESEPYDDEGHGTSMAGILVADGGLNGIAKGVNLYIAKALASDGSGDDQTVATA
                     VDWCIQQEVDIISMSLGGTAGLRFFGQSTDESENSVQAALDAGIYVIAAAGNDGGPDD
                     DGDVESPGSIQRVICVGGHDRTGDMWEGSSQGDNNGGFFPPRLPNSDPDMKPEITGGG
                     HEVPVLIIPSSGFSDYVWGWSSGTSAATVYVTGALAISLQGAPNLQPNAIDGGPDAIL
                     NVKEALMETASDAPESHDDYEGYGQLDAAALFQSLTGLDPDTPPASAF"
     gene            complement(13732..14943)
                     /locus_tag="HA345_03285"
     CDS             complement(13732..14943)
                     /locus_tag="HA345_03285"
                     /inference="COORDINATES: protein motif:HMM:NF012488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HIH84414.1"
                     /translation="MDPKTIRNQIPSLQGDSPIYLDNACVTLRPQSVIDAVTRYYEQE
                     PSCGGRSAHRWGMAVTRTEHAARDGIARLVGAQGPDEVVFTRNATHSINAVAHGTKWE
                     RGDVVVITDKEHNSNSIPWRMQDGVDVRVARTDEDGRFDLEDFEAICADAGDSLRMAA
                     IGHTRNLDGTSTPAKECAKIAHDHGAQILLDAAQSVPHQAVDMQEIEADFLVFSIHKM
                     MGPSGMGALVASEDAFNGLRSIAAGGQTVSRSTIDGFVFKPGRSHLEGGLGHYAGYYG
                     TAAAVDFLNDLSMEKIHEHEVKINRIISEGVRDLDGTSIIGPDDPSERGGITSILLEG
                     RDPHQIAIMLDEGFGIYARSGLHCVDPWFHANDALNGSLRFSAYAYNTIEEAKQTVDA
                     MDELFTAIPRT"
BASE COUNT         3464 a         3615 c         3857 g         4028 t
ORIGIN      
        1 agatggagca cgagaagtcg aacaagatct gtgactgcac catcgaatgg ttcgtcctta
       61 tggattcgcg gaccacctcc ttgcaaggag gtacgcaaat caactacttc tgtagctgag
      121 agtgctcctc gaagaatcat tcctccatca ccggtgttac atgggtggtc atcgaatcga
      181 tggttgagtg caaagagaag ttcggtcaca cgttgattgt cttccgttgg gagtacattt
      241 tgaatcatgt attcaagaga tgtctcctca tttggcatcc ttccgaatgc ttccctagag
      301 atgcgtgttt catcgagtgg aggacgtaga cgtcctgtat catcttggtc aattaacaga
      361 acgaatagga ggttggctgc atctagggtt gatttaccca catggtgagc ccagcgtctt
      421 tcaattgagg taggagcaag agatggttcg gtaggttcag acgcacacca atcggcgaat
      481 ttcaatgggt ccacgtcgag gatagggtcg agagtgacaa agacagcaca catttgctca
      541 tctccttctg cttgaacgct gttccttacg atattcaagt tcgatgattt tacgttcaaa
      601 tggatctgta acgccttcta agcgtctttc aagttcagta ggttcagcag ttgccacttc
      661 aacgatttct tcaacctcat ctatgatctg tatttcatct tcggcttctt ctggggtacg
      721 gtctgatgaa gtattttcgc tctcctcatc ggaaccttcg atctgaatcg aatcatcttc
      781 atcctcttct tccatatcca catttgattc tttgactact cccttcttct cagaggattg
      841 tgtttttcca ttcttcttct gaggtttacg attcggtaat gtatccggtc tgacgaagcc
      901 aacgaaccaa agtgtaacaa ggacgatggc agcggtaatg gctgcgaaga tagtatccga
      961 ggatgcctca attacacctt ggccatcggt aagggtgaag ctcttttcat catcgttcgg
     1021 cgtagagtcg atatcccacg gagccgcaca agccagctct gctgtgattt gctcaccatc
     1081 ttcgatttct ataggtcgtt cgatttcgac acttgggttg atgagacctc ccatgtcaat
     1141 ggattgtatg agggaccacg taccggtact cgtggtatac gttactgaac acactgcttc
     1201 aggaagttcg attgatcggg tcgtagtaag acggagtgtc tgtgatgagc ctacgccaga
     1261 agaggtgaat gacgagatgc cgatattcca gtcggtattc ctaatgacgt gttcgtctac
     1321 atcttcgtca atcagacgtc cttgagcgtc acgaagaatt acagtgatac tgtggtgacc
     1381 tacggtaggt tcccaggtcg aattaaggtg aattgaacca ccttctcctg caggtatttc
     1441 acttgcgaat gaagctagaa gtgcgccact gtcgtcgatt actagcatgg tgtatccata
     1501 ggattcggta ccattcacta tggtgcaaac ggattcaata gaggtcccat taaggttgga
     1561 tgaacagatg gcacttcgtt ctgatgcttg agtactgaat gccatcccat caagtgattc
     1621 tccggagatt gtcgcagtga tactacctgg taatcctatt gtgtacatcc atcctgaatc
     1681 actagtgggc agtggaccag atgttccaat acgaacggtt tcagatgtcg atgaaccata
     1741 gaatgacatc atccataggt cactttccat tccgacaata actggtgtag ttgcccacga
     1801 acgagtagtg atgaccgggt ccagtgcaaa ttctctctga ttatctccat cgtccgtggt
     1861 aatcactgtg attgtcggca tcgtgcctgt cacgtttggg ggcgtcagat caattgggac
     1921 ccctcggatc tcaccgattg caaggtgtat actctctgga tgttctacag accaaccagc
     1981 acctgttccc tgtacctcga tgtcgattgt agtgggtgaa tttcctaggt tccgaatcca
     2041 gaggagtggc atgccaccat cttgagtgat tatccagtca gtatctccgt ctaagatgtg
     2101 gttatgcaca gcatctactc ggataggtag tgtggtggtt gaggtccctg aaccatccgc
     2161 atttcgtagg atgatgttga gttcgacagc agcgcctgca atcgtggcct caggaggtgt
     2221 gatgttcaat cgcatttgcc cggattctcc aggagataga acgcctggca tctccaatac
     2281 gctgacattc catcccaaaa ctcccttcac gaatgtgtta gcatagggtt ctgcaggaag
     2341 gttcccattt tggaccacgc ttagttcgat aatctcgccc tcgggagcga tatcgaggtc
     2401 tatacctgtc gcgacaatcg accaagaggg agcgtgccct acctcaatcc gatgtgatgg
     2461 cccttctagt atctgaatat cgccagcgag cgcagtccaa tcgatggtca tcatactacc
     2521 attccatgcg tcctcaggga tgctgatgtt caacaataga gtggagtttt cgccgacatc
     2581 caagattgga gatgatgctc cctcaatagt ccaagagctt gcagggtctc cgggaacgga
     2641 ttggagaact ccttcaccac tgagattgat ttggtcgtca taatttccga tgttttcaat
     2701 cattacagga atagatacag tatcccctgg aagggcgata attcgacggt cggtttcatc
     2761 tgtatgcaat ggcattgatg gatctggagc actgtagttc catgcatggt cttgctggac
     2821 ttcatagaga atttgagttg tgccaatgac ggaggtatct ccgagagaaa tcatctcgaa
     2881 attcacagtg aatgggattc tcgccggggt gccagatggt gcgttgattg tagcgggaat
     2941 ggaagtggaa actccaggtt gaagtgtcaa tgtattgaca gggaattgga tggttatgtt
     3001 ctctgaattt gatagatttc catctatatc gacagtaccg ataatctggt attcatctac
     3061 accatttcca tggttctgga aggagagtat agtatcgata ggggtactgg tctgtatgta
     3121 cgtttttcca gtgaattctc ctgtggggtt ggaggggttg ctaatcgtgg cacggtgaac
     3181 ctgtaggacg ttgaggctta ggttgagatc tgcagaagtg tcgttccctt cttgagtgga
     3241 aaaagtgtga atcaaggggg gtgcggttgg tggtaagtca acgaagagtg aaccgttgaa
     3301 tgaaccattc gaactgcgtg catagaggcg gtcagattct acgcttagat ctcctgatcc
     3361 agaaagtaac catccactct gtgaagcgag ccctgcagcg taaagatccc attccatttc
     3421 ttgatcaccg gggttaagaa tcccctcgat gacccattct atctcgggtc cggattcgac
     3481 cggttgaaca cggtcatgag aggggcgtgc tgcgatttga ctcgcgacga atgtcactag
     3541 tattgtttcg cattctcgtt gttctccaga cccgatgcaa atctcgaaat cagaattttc
     3601 gctttctcct aggttagcat ttgatggcac actgatggcc aaggatagat gcttgacctc
     3661 tcctggttga agagttaagc tagagattga attccagttc tgttcaggat cttttagctc
     3721 cattccatta ccccatcctg tgcttccaaa ggtcaaacca gtcgaagtct caacagcatt
     3781 accgaggttc tctattagga tccaggaata tgcgatgcca cctggtatcc cccagcccat
     3841 agtggaagat gtctccatcg ggcctctcag agagattcct cgagtccgat ttgcttcgac
     3901 cgggactgta gcgaggactt ccaaagaggt atcctccgcg atagtgagtc gtaggtttac
     3961 ggtgcctgag tcggaaccaa gggcggacgc aggggctgtg atgcggaggc gtggattcca
     4021 ttcctcgttt gaatcgagtt cttcattcgt cattgtatct agaggcacta cagtccagtt
     4081 ctctggcaga ttggttgaat caatctcaat actccaggtt gaggtattct ttcctatatt
     4141 ggtaatggta agggtgacgt cttctgatgc accagggttg actcggacta aacctccttg
     4201 gatgccaacg gaggcggaaa aaggctccat gacctcgagt gtccgatttt gttggttgtt
     4261 atccacccgt gtctctgtga ggtttcctaa tgggtcaatg atgactgaga atgtatgatt
     4321 gccgagatct cctgaccagt cgacactaat tcggtcaaag gttccagtcc cgctgggatt
     4381 tgccggttcg agggccggga tacgctcacg cccaatttca ataccatcag catagagaac
     4441 tacgtctaca ggtccatcag tggccactgt tccgacattc tctatgaagg ccgttacggt
     4501 tgtcatctct cctgggtcgg gttcaggtgg gtcgaattcg atgcccccgt cgtcgacgaa
     4561 ggggcggaca tccgccgcac cgtgagagat taccaaatct ccaatgataa tgtccatcat
     4621 cgcatcaccg tcgatgtctg ccaatgcggc tgcagcccaa gtccgcgttt ccagttccat
     4681 ctcattactc cagttcaatg agacagccgc actagtgccg tcgtcaccgt caaaggcatg
     4741 cagactttgg ccataaggga ccattaattc aggttctcca acaccatcga tatccatcca
     4801 gaatggaggt gcgactgcaa tttcatcgtt tagagtacca ctcgatgctt ccaatgttcg
     4861 acgccaacgt tctatgggtg ttgattcgac atttgtgcag cctgttagtc cgtcgcgaga
     4921 gccagtattg cttctccaag taatccaaca gacgcgatcg tccactccat caccatccgc
     4981 atcgtagaca actggtggag catctgcgta gccgtcgtag gcgttgaagg accaaatctc
     5041 tgcagcatta gttgcctcta ttgctatgaa ctctgcccca tctacggggc catttcctcc
     5101 tgcatctgtt ggaattgtta ggatgagttc aggggcattg tcggagtcta gttgtgcaac
     5161 aatcgggccc ggtagtcgaa tctgtggggc gttcgaactc cctccgtcta gattgccaag
     5221 agatgcccct ccactccatt cggatgcccc tgtggctcca tctaggcgcc atgcccacat
     5281 gaggccatca ttctcctcaa tcgatgttag gaatacagat gctgtgtttt cacttaactg
     5341 cgcaaaggtg aggtcggatg ggtgtgatcc ctcctgtatt tctgctctcc agttttcctc
     5401 aggtgaacca gtcatcggta gggatatgga taggataacc ggcgtctctg tagcttctga
     5461 gattgctgcg atggccacct ctggattccc gtctaggtcg agatccgcga ctacgggttg
     5521 cgcagtaggg tggtggtctg aaggccatcc cacgttcgcg cctacggggt gttccaatga
     5581 cagcccctcg tcagtccatg tccagagttg ttcgctagaa tgtgagcctc ctgaggacca
     5641 tcctgtaggg gtgcaagtga gcgttggact ccacatttcg acgttcaatg ttccttggct
     5701 gtcgaacatc acgagaattt ccggtttgcc atcgtcattc atatctgcaa caatcggtcc
     5761 aattttcatt ggccgtgtag ggccaagatc aacagtccaa gctagatttg cgtcttctcc
     5821 ttcgataatt cgtaagaatg aatgttgagt cccagcgatg tcctgttctt gtatgatgac
     5881 cgggaatagc gaatcgcctc cacaggattc actgtatgct tcggggcgat taatcgaatc
     5941 cgagaagtca ccaattgcag ttgagagaga agtagttcca atggtatcgt cagtaaattt
     6001 ccaatttact acagggtcaa gtaccgagcc aaggacggta gcagcacttg gtgacccagc
     6061 ccctgctcct ccattagggg aatgatcagg gggtgtctgc ctgcgatcgg cctctcctag
     6121 atactgcccc catgggctgt catcagtcca tggttgtgtg tttctgagcg aattatcgga
     6181 gggctcggct agagtcaaag gtgaaggagt aaccaaggcc gaaccggtgc tcatcaggaa
     6241 gagcaggacg atgccaatgg tgggtactct atgggggctc atggaacgtc acatccttcg
     6301 atacactctg attcggttcg cggacctctt caacattttc ggattaagag catcggaaag
     6361 cgttccttca cattgaatcg ggttctccga cgagtgttcg cgcagcctag cagacaggta
     6421 gggcttaaat ggaggctgga agtcggcgac ttgcacctct cctcctgagg cgatgccggt
     6481 gaaggacgaa ctgggtcacg gcccgctcgt cctcgccctc gtcaaggggg gaaagttgga
     6541 ggccaaaata tgtactacat cgttgacaag gaggacacaa tccgcattcc acccgagtac
     6601 atgcaactcg gggatgctct tgaggagaca atcaacatac ttgctctcaa tgcatttgaa
     6661 ggtcgatacg accagaagac ggaggacttc atccttctca ccttcgacca tgaggttctc
     6721 ggccgtggcc gtgtgattca cggtgatggt gcaatctacc agaatgtccg ctacaaggct
     6781 ctcatgttct ccatggatca gagtgaggtt gtagatggaa aggtgcagaa ggtcaacgat
     6841 ttcggagcat tcgttttgat cggtcctgtt gaggcactac ttcacaaatc gcagattttt
     6901 gaggagcctg tcaatgtgga actcggtcaa ggaattgctc gtatcgttgg gtcccagtcg
     6961 ggccgcaaca ttagcgaaaa cacccacatt cgtgcgcgta tcgtctctaa gtcgattaat
     7021 cacaacgacc cccgcagtag taagattggc ttgaattgta agcagcctgg tctaggtgcc
     7081 tttgagtggc taaaggagga tgcttgagat ggtttccaag tcgtacgctt gcggtgaatg
     7141 caatatgatc ctcccggatc ccgagaagaa gaatgagatt cctcagtgcc catattctcc
     7201 ttctgcccca gtttcgaatg attggcaagg acttgtcatc attatgaatc cagaaacctc
     7261 cgaggtcggc aagcggatgg gtgtaactcg tccaggaagc tatgccctca aggtgaacat
     7321 acgttgaggt gaaaagaatg aacatcgacc agagaatcga gaaccctatc ctccagcgtg
     7381 tggaattaca tttcactatg gaacatccag cggctccaac tccgagcctc aaggagatga
     7441 ttgatttcat cacgaagatg gagcctggtt cgaagaagga gtgcacattc attcttgatg
     7501 tcacttctcg cttcgggcgc tccatgacga ctggtgtggc tcacgtgtat gagaacgacg
     7561 aggccgcagc gaccaccgta cccaacttcg tcaaggatcg ccacgtccga cgtggtgctc
     7621 acgccgaggc agcagcagag cctcaggtag aggaagcagt tcctgaagaa gaatcaaatg
     7681 aagaagaatc cgaggaggga gcctgatggg agagaagtgg cgaaaatcca aggtaagtaa
     7741 gtacgatatg tccagcggcg agcttgttcg caagggtgag ttttgcccac gttgtggacc
     7801 tggagtattc cttgcagttc atgcagatcg cacatcctgt gggcgatgcg gctaccgcag
     7861 tgggcagaat aaggcagcgc cgcctgaatc cgctgattct tctgaagaag aatgattcag
     7921 acagttaagc cgtgattgct ccactgtcca tcattgcaga ggacccggat tttcttgtct
     7981 atcataatct gccatacgcc atgttcgggt cgtgttatga ctccattcgg acctccatca
     8041 tgcctccaac ctgtccaata ccattcagat tcgagttcga ttgcgtgacg gacaggtccg
     8101 gggacatctt tcgtctcgag gagtgtgaat tcagggctga ggatgtggat tttatttccc
     8161 gattcggtga ttgcccaacc actttttcct ttccagactc ctgtcgtttt tcctctgaat
     8221 ggaagccgac cttgctctgt atgtgagcca tcacttcgtt caagacatgc ccatgctcct
     8281 ctatcatcaa aaatatgaat ttgattttcg ccaagatgga ctgacaaagt gtaggactct
     8341 accttggctc cttcccatgg gggtgaccat tcagggattt ccgaccgcca aatctcgttg
     8401 gaagttaacg ggtcaatcag gtagacacct cggttcatag caacaaacac tgcggctgtt
     8461 tcgtcgatat ccatagctag tatttcggca gacattccat gattccagag tgatcctgga
     8521 gcatggatgt cctgatttgt cgagacagca ttcctatatt ctcctttgtc agcgaatgca
     8581 gggtgccatt catcttccat gctgtatcct gctattcgtg atactcgcag ttctctgtcg
     8641 atccaagata cgatggcaag attgtcatgg atagcgattt cagcgacttc ggtagggagt
     8701 ggtagaactg gtggcagaaa cttccgtcca gtaatgtccc aacgttggat tgagtcgtcc
     8761 attaggagag ccgccatcgc ctgatttttc ccgaagcagt ggaggatggg tcctgcggct
     8821 tcttcggtca tggcgcctga tatctcccct agtggtttga acatgtggtg actatccaag
     8881 agattgaagc atcgaatgac atggaccaat tcatggccac tgtctctctg cttgtagtat
     8941 cggagtccga tattgggtcc acagtccaag ggtgtgctct acttgcacga ggtggttggg
     9001 atgagcatgc agcggttgat ggcggccgag tgtggcggca ccggagcggt cgtgtggact
     9061 tatggtggag agatcagcct catttgtaca gcgattatct cgacaagcag tacgaaatgg
     9121 aaacttcacg ttctctgagc gaggtcctct ttctttcacg tcatgtcgct gcatccggac
     9181 gtccgagtct caccttacat gcgattggta ttcctggtgc atctcctcat ggcgaagcag
     9241 cagagtatgg ggggaggaat ggtatgactg taccaccatc gccaagattc gcctctattt
     9301 tccggcgtct agatcaaatt gctaacagaa cagacatcat tgaagagttt gaaattactt
     9361 tggagacgac tcaccatggg cctatccttg atactccaac gttgtttatc gaaataggat
     9421 ctactgagga gcactggggt cgacaagatg cggctgaagt gtgggctgat gtacttgcgg
     9481 gggaatttga atttgaggag gagttggaga ttacggaggc caaggaaatc gccttcatcg
     9541 gcctaggagg tggccattat gctccgagac atcaagctat actgagggct acatcggctc
     9601 attgtgggca tctacttgca tcgtattctc ttccatttat tctacctagt caacctgatt
     9661 gggatccatt aacggggtcc ttgccagagg gttcatggaa gggcgcaatc gatgtttgtc
     9721 tcaaacaaac acaggatgtt ttcccaaact cgaagattgt agcgcacctc gatcgcaaat
     9781 cattcaaggg gtggcagagg cagtcaatac ggcgtcatct tgaggccaaa ggaatccctc
     9841 tgtttcgtca ggctgacttc cttgagtttg acaagttgaa gcgggaatcg tcatagccct
     9901 catgatgaac agcgtcccat ggggctactt ggtcgtgctg tggtcacggt tctccccctc
     9961 atgccccgtt tcatggtagg atgggtctca cgccgttatc atgcagggga agatatctct
    10021 gctgccgtga aaaccatgcg taggctagag ggagagggtg cctgttttac catcgatgtt
    10081 cttggagagg aaattaccac gatggaggag gctgcctttt tcgtcgagga gtatgggcga
    10141 gtccttgagg cgattattga aacagggatc gatgctaatc tatcgcttaa gccgacagcc
    10201 ttcggactac ttattgatcc aacaattgcc gagggttcca tcgagaaact tgttcgtaaa
    10261 gccgcaggga acgacatttt cgttcgtctt gatatggagg atcatcgggt cactcagcct
    10321 acaatcgacc ttgttgcaag gatgcatgat cgaggtcttt cgaacatagg gacagtactt
    10381 caaggcagat tgcatcgaac gttgggcgat atcgagaaga tttctgagat tctaggttca
    10441 gcagccgatc acagaatttg caaaggaatc tatcttgaac ctgagaatat tgccttcacc
    10501 ggaaggtcag atatcacgag tgcaacgaac caagccatcg atgctgcatt ggactgtggc
    10561 gcctatgtcg gcattgcatc tcatgatact aatatcgtga aacattcctt gactgcgctt
    10621 gaagatagag ggatgggtcc agggattcct gatcccaggg agttggcagg tccacaacgc
    10681 ccgggtaaag ggcccggata tgagttccag atgctgcttg gtgtccgggg agatattcga
    10741 cgacgtcttg ctaagcaagg ccatcgtaca cgtgtgtatt tgccatacgg ttcgaagtgg
    10801 tacgagtatg gtgtacgacg gcttcgtgag aatccagatg ttgcttggca cattaccaag
    10861 gctctattct ttccatggtc gaataggcgt tgattagtcc ctttgccagc gtcgatcgcg
    10921 cggtacaggg ggtgggtgga ggaagagacg ccgaatctct gcagcctccc tacgtccggt
    10981 caaagtacga cctatgccag tatgtattgc tcgaatacgc catttttctc cttcgtgttc
    11041 tatgattgtc ccacaggaaa acacagtatc ggggtccgat tcgattatac tcgaagcact
    11101 atcctctcct cgtgtcattg tgaccttaat ccgaacaaga tcgcaacgaa cagcccatgc
    11161 ggagacgatt gaaacagggt cagcatatct aacggattgt tcttgcttga gatgtaatgt
    11221 ctgtaccctc cagagcatct gggcgtgatc gaagacatca ccgatatgga tgacctcgtc
    11281 ctcgtcaact tcaatttctt cattgctact gtgtgctccg tcagaaagag tgaactgaac
    11341 aatcactgcc tttggaggtc tgacatgaat caagtggaca tgagagcagg tttcgcatcg
    11401 aaccctgtag tcggctcctc caccaacctc tttctcggag agtatctcat ggacttcttc
    11461 ggtaccacaa gatggacatt cttccacatg gacgagctcc tcgtcttccg cgtcggtatc
    11521 gtgagttgcg tcctccatgg acgcgcgccg ttcacacttc atttaggtct gttggatggt
    11581 gggatggttc aagggcaacg aacgggagcg tttggtatgg acggaggcct gcctcagttt
    11641 tctcaagagg agattatgac tgcactccta gcaggctccg aaagaggggg tgaggagcca
    11701 gagattgctg ctaacatcac tcagcagatg ttgcacatgg aactcgaacc tctatcaaga
    11761 tctatgcgtg cacgacttag ggacattgta gtgcgtttag agcctgatca ctttatcgag
    11821 gtcggtgcag gtattggtca actcagtgca tggttccacg atgcttggga aagtggtggt
    11881 catccgaagt cctatgcgat ggtagaggaa ggtcagcgat tcggagttat tctacagagg
    11941 gtcgttgagc gcttctctgc tgccgattgg tgcaatgtcc gcgttggccc ttgggatact
    12001 atggtaagtg aatcaattgc ttggcttgca gcgaatgcct ccatgccaga ggaggcacgt
    12061 tcgggatcaa tcctccctgt tcccgcagat gttgtgttgg ttaacacaga ttggaggagt
    12121 caagtgaagg atgttgagga tgcgttccaa cttcttcgtc caggtggcgt tcttttgact
    12181 cccgaaccat tggttccatc atcagatgtg ggcgattatc ccgaaggtga acctcagaat
    12241 gatgcacaaa tacgtgtcga ggtgttcaat cactggattc gtctgattca acgatggtct
    12301 actgagcatg ccgttggaat tgcggaagtc acagctggtt cggttgtggc aattcgacgc
    12361 ttgaaataat cagaatgcgc tcgccggggg tgtgtccgga tcgagtccag tgaggctttg
    12421 gaatagagca gcagcatcga gttgtccata gccttcgtag tcatcatgtg attcaggagc
    12481 atctgaagcg gtttccatca aggcttcttt cacattcaag atagcatctg ggccgccatc
    12541 aatggcattt ggttggagat taggtgcacc ttggaggctg attgctaatg cgccggtgac
    12601 gtagactgtt gctgcacttg ttccggagga ccaaccccat acataatcgg aaaatccgga
    12661 actggggatg attagaaccg gtacctcgtg tcctcctcca gtgatttctg gtttcatatc
    12721 tgggtcgctg tttgggaggc gtggggggaa gaaaccgcca ttgttgtcgc cctgactact
    12781 tccttcccac atgtctccag tgcgatcgtg gcctcctaca cagatgactc gctgtatcga
    12841 acccggactc tctacatcgc catcatcatc agggcctcca tcgtttcctg cagcggcaat
    12901 tacgtagatt cctgcatcga gtgcagcctg aacggagttt tctgactcgt ctgttgattg
    12961 tccaaagaag cgtagacctg cagtcccgcc aaggctcatg ctgatgatat cgacttcctg
    13021 ctggatacac cagtccacag cagtagcaac tgtttgatca tctccacttc cgtcgctcgc
    13081 gagtgctttg gcgatataca ggttcactcc cttcgcgata ccattcaaac cgccatctgc
    13141 aacaaggata cctgccatag acgttccatg tccttcatcg tcgtagggtt cagattcctg
    13201 attaatcaca tcagtccatc cggctagagt gactttgctt agatctgggt gagctaggtc
    13261 aatccctgta tccactatgc atacatctac gctgctacca tcccatccaa caaatgaatc
    13321 gagtccagtc attaattcgt gatcttcttg ccaatcaatg agttcttgag gtggcccgag
    13381 tagaattatc tcaccttcgg gaaatagcac aatcagggat gaagctaaga taatcataat
    13441 tgatgcaagt atgacttttg gtttcctaag ccaattgatt ggtgggagcc accaaggcat
    13501 caaccatatc tcggcctcat ctagtatttt tttgggaagc aaatcaatcc taccttctcc
    13561 tttttgagag tcggataatt cgtcctcgat agattcagaa ttggctaatg atgagacgaa
    13621 gtgttcctct aaattgctag gaacagtttg ttcaaggatg gaatcaatca catcctcctc
    13681 gtcgctattc acggggctag gtggagaccc tcctacaaat tgattcggtc gttatgttct
    13741 cgggatcgca gtgaataatt catccattgc atccacggtt tgttttgctt cttcgattgt
    13801 gttgtaggca taggccgaga atctgagtga gccgttcaat gcatcattag catggaacca
    13861 cggatcgaca cagtggagtc cactccgtgc ataaatcccg aatccctcat cgagcatgat
    13921 ggcaatctgg tgagggtcgc gtccttccag caagattgag gttatccctc ctcgctctga
    13981 cgggtcatca ggtccaatga tagaggtgcc atcgaggtca cgtacccctt cgctgataat
    14041 tcggttgatt ttcacttcat gttcgtggat tttttccata gataaatcgt ttaggaaatc
    14101 aaccgctgcc gcggtcccat agtaccctgc gtaatggcca aggccacctt caagatgact
    14161 ccttcctggc ttgaatacaa agccgtcaat tgtagatctt gatacggtct gtccacctgc
    14221 ggcgattgac ctcaatccat tgaacgcatc ctcagaagcg acgagtgccc ccattccaga
    14281 tggccccatc attttgtgga tgctgaagac cagaaagtca gcttcgattt cctgcatgtc
    14341 tactgcctgg tgtgggacag attgcgcggc atctaggaga atttgtgctc cgtgatcatg
    14401 cgcgattttt gcacattctt ttgcaggggt cgatgtccca tcgagattcc ttgtgtgccc
    14461 tattgctgcc atacgaaggg agtcgcctgc atcagcacat atggcttcga agtcctcgag
    14521 gtcgaatcgt ccatcttcat cagttcgagc gacacggaca tcgacaccat cttgcattct
    14581 ccaagggatg gagttagaat tatgctcttt gtcagtaatt acgacaacat cgcccctttc
    14641 ccactttgtt ccatgtgcga cggcgttgat tgaatgggtt gcatttctag taaacaccac
    14701 ttcatctggg ccctgggcgc cgacaagtcg agcgattcca tctctcgcag cgtgttcggt
    14761 tcgagtcaca gccatgcccc atctatgtgc gctgcgacca ccgcaggaag gttcctgttc
    14821 gtaatatcga gtcactgcat ctatgacgct ctgtggacga agtgtaacac atgcattgtc
    14881 taggtagatt gggctgtcgc cttgtagcga gggtatctga ttgcggattg ttttagggtc
    14941 cattaccatg catcctccat tggg
//
LOCUS       DUKB01000095            2936 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_191912, whole genome shotgun sequence.
ACCESSION   DUKB01000095 DUKB01000000
VERSION     DUKB01000095.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_191912"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(46..1218)
                     /locus_tag="HA345_03290"
     CDS             complement(46..1218)
                     /locus_tag="HA345_03290"
                     /inference="COORDINATES: protein motif:HMM:NF014040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dna2/Cas4 domain-containing protein"
                     /protein_id="HIH84415.1"
                     /translation="MEGRKTSQGFWVDSDEKPIHVSASDVERFVYCPMSWRLSQEGVS
                     AKGEEVRRGIEEHEKLHTMIIERNQARERFTKNLVIWSWWFSVVLTLAADTAAFYFVQ
                     DGTIDDQIAKSIGGYLVLLALVWLLLAIALLFLPWRTWIGWDEELVDAPKDLSELKDD
                     LHPLSKPWRLSQAGWFTFGRPEALILFAAVALSLHGIALNFADNRSIATFAMLVIALV
                     WTLLANTRLQAALRANQNIEENNAKIGMDGLGEIRYSDGGDALLLEDPESGLRGRPDQ
                     ITKIGEDLIPVEFKSGRTPKNPHKSHRFQVLAYLQLITAVTGKSPPFGLLRYGSESVH
                     SIEWTTSAKYEMKDMIIDIQRTMVEGGAERDHERPGKCAHCSRRDECPDRLITQGE"
     gene            1373..1981
                     /locus_tag="HA345_03295"
     CDS             1373..1981
                     /locus_tag="HA345_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010901597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HIH84416.1"
                     /translation="MEVDYLIPRDMYEQHFVHIGTQQSSAHMTPFLEPEKQEGTGLYL
                     IDLEQTNSRFFTVANFLSRFKPENILVVSARQYGQRPARRFAQAIGARHIVGRFIPGT
                     LTNPRLRNYIEPEVIIVTDPQADQQALSEAVNTGLPVVGICDANNTLRFVDLVLPANN
                     KGRRSLALVYWLLAREVVKAQGRVSDDDWAKAEQIEDWESSF"
     assembly_gap    2071..2379
                     /estimated_length=309
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2380..>2936
                     /locus_tag="HA345_03300"
     CDS             <2380..>2936
                     /locus_tag="HA345_03300"
                     /inference="COORDINATES: protein motif:HMM:NF013380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase family protein"
                     /protein_id="HIH84417.1"
                     /translation="PMAGVTDLPFRLLARECGADITVTEFTAAAGLNRDDARSWRRLE
                     SDPRESPFIPQIFGGVEEEMVGTTRALSSVADIIDLNFGCPAPKVCRNSAGAALLGDP
                     DRLVSMVRACIAASDVPVSVKVRLGTGSGPNTALNIAHRLEAEGILRIAVHGRTLRQR
                     YSGDADWHQIREMVDALSIPVIANG"
BASE COUNT          604 a          659 c          676 g          688 t
ORIGIN      
        1 gtgtccactt cgaagaggta cacgaggacg gtgagtgcac agatcttatt ctccttgagt
       61 gataagccgg tctggacatt cgtcacggcg tgaacaatga gcgcattttc caggtctctc
      121 gtggtcacgt tctgctccac cttcaaccat ggttcgttga atatcgatta tcatgtcctt
      181 catctcgtac tttgcggacg tagtccattc gattgaatgg actgattcag atccgtagcg
      241 gagaagtcca aagggtggag attttcctgt tactgcagtg attagttgga ggtatgccaa
      301 tacttggaaa cgatgactct tgtgtggatt ttttggagtt cttccggact tgaactcaac
      361 tggaatcaag tcctctccaa ttttcgtaat ctgatcaggt cggcctcgaa gacctgattc
      421 agggtcctca aggagaagag catctcctcc atcactgtac cggatttccc ctaatccatc
      481 catcccaatt ttagcgttat tttcctcgat attctggttt gctcgtagtg ctgcttgtag
      541 tcgtgtgttt gcaagcaacg tccaaacaag agcgattaca agcatagcaa aggttgctat
      601 gcttcgatta tctgcgaaat ttagggcaat cccatgaagg cttagggcaa ctgctgcaaa
      661 tagaatcaac gcttctgggc gaccgaaggt aaaccagcct gcctgagaaa ggcgccatgg
      721 cttcgataat ggatggagat catctttgag ttcagacagg tctttgggtg catccacaag
      781 ctcttcgtcc caaccaatcc acgtcctcca agggaggaaa agtagagcaa tagcaagtag
      841 aagccaaaca agggcgagta gtacgagata tcctccgatg gattttgcaa tctgatcatc
      901 aatcgttccg tcctgaacga aatagaaagc agctgtatct gcggcgaggg tgagtaccac
      961 tgagaaccac caggaccaga tgacgaggtt cttggtgaac cgttctcgcg cttggttcct
     1021 ttcgatgatc attgtgtgga gtttttcatg ttcttcgata ccacgtcgga cttcttctcc
     1081 tttggccgat acaccttctt gggacaacct ccaactcatc ggacagtata cgaaacgctc
     1141 tacatccgat gccgagacgt gaattggttt ttcgtcagaa tctacccaaa aaccttggct
     1201 ggttttacga ccttccatga gcggaaggcg gagcgattca gacaggttca cgcgggcatt
     1261 ttgaggctcc tacatctaag gtcttggtac gaatcgcgcg gtaatcgaag agagatagcg
     1321 cgtatgagtg gttatgaatg ggcggaaagt gggcgcgttg ctgagtaaca tgatggaagt
     1381 cgattacctc attccccgag acatgtatga gcagcatttc gtgcatattg gaacccaaca
     1441 aagtagtgca catatgaccc cgttccttga gcccgagaag caggagggta cgggacttta
     1501 cttgattgat cttgagcaga cgaacagccg tttcttcacg gttgctaact tcctaagccg
     1561 cttcaagcca gagaacatcc ttgtcgtcag tgctcgccag tacggccagc gtcctgcccg
     1621 ccgtttcgct caggcgattg gcgcccgaca catcgtcggc cgatttatcc ccggtactct
     1681 gacgaatcct cgtctacgca attacatcga gcctgaagtc atcattgtca ccgatcctca
     1741 ggctgatcag caagcactgt ctgaggcagt caatacagga ctcccagtag tcggtatctg
     1801 tgatgctaac aacacactcc gcttcgttga cttggttctt ccagctaaca acaagggtcg
     1861 tcgtagtctt gctctagttt actggcttct cgctcgtgag gtagtcaaag cacaggggcg
     1921 cgtctctgac gatgattggg caaaggccga gcagattgag gactgggagt cctccttctg
     1981 attattcgtc actgtcaaga cctcatgccc ctccccgcgg ctatggaccc tgtcccgttg
     2041 ttcctagccc ctatggcagg agtgacggat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc cctatggcag gagtgacgga
     2401 tcttccgttc cgacttcttg cgcgagaatg tggtgctgat atcacggtga cagagttcac
     2461 agccgcagct ggtctgaacc gagatgatgc acgaagttgg cgtcgtcttg aatctgatcc
     2521 gcgggaatct ccgtttattc cacagatttt cggaggtgtc gaggaggaga tggttggcac
     2581 aacacgggca ttatcctctg tcgctgatat catcgatctc aactttgggt gcccggctcc
     2641 aaaggtttgc aggaactcag caggtgccgc tcttctcggt gatcctgatc gccttgtttc
     2701 tatggttcga gcatgtattg ctgcgagtga tgttcctgtc agcgtcaagg ttagacttgg
     2761 caccggttcg gggccaaaca cagccctcaa tatcgctcat cgcctcgaag ccgaaggcat
     2821 cctgcgaata gcagtccatg gccgaacatt acgtcagcgc tactctggag atgctgattg
     2881 gcaccagatt agggaaatgg tagatgcttt gtcgattcca gtgattgcca atggcg
//
LOCUS       DUKB01000096           18984 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_78486, whole genome shotgun sequence.
ACCESSION   DUKB01000096 DUKB01000000
VERSION     DUKB01000096.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 18984)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 18984)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18984
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_78486"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="HA345_03305"
     CDS             complement(<1..767)
                     /locus_tag="HA345_03305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HIH84418.1"
                     /translation="MTVEWSDNEGASWSPPTPATSYSVQDHQTISSSPYPAALHPTTW
                     VFCINGNWEAPLCSTSFDGGNTWSPEVPGAPLGCGSGGLSAHIEGGANGNFYRGNAGC
                     SGSGYSIYRSTDGGFTWTEHPLPTDESGTADTWNAEEAQVAIDDDDNVHAMWMGSDNM
                     PYYAYSRDEGETWSNAMMIAPPAGIVGTGFPVVTAGAAGKVAFGYVGDAGNNTWNGYM
                     TVITDAFNENPLMTTIQINEPGNPLDTEDGCGYNRCGG"
     assembly_gap    801..1113
                     /estimated_length=313
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1114..1620)
                     /locus_tag="HA345_03310"
     CDS             complement(<1114..1620)
                     /locus_tag="HA345_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84419.1"
                     /translation="MRVTSAMLLTLLMIGGSLSGCFGGDDEVPEAEDSPFDFGKEIPE
                     TTWYHYAGGVDALNDSAVQSANITVNLTGENTPFWSQGSYYGIGMSTFEPTIGITSDD
                     NLYITSWGNGPLGSTAIVQCSGMIGMTNLSDYSCEDTYNPLLPVPNSNDPYVYVDKWT
                     DRIMKFDMH"
     assembly_gap    1698..2057
                     /estimated_length=360
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2145..4433)
                     /locus_tag="HA345_03315"
     CDS             complement(2145..4433)
                     /locus_tag="HA345_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013879694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HIH84420.1"
                     /translation="MSKDNTLERDALEYHEAAPQGKLTVVPTKPHSTQRELSLAYSPG
                     VAYPCLEIEKDEANAYRYTAKGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGLLFKA
                     FADIDVFDIEVDSEDIDDFVQTVKNIAPTFGGINLEDIKAPECFEIERRLVEELDIPV
                     MHDDQHGTAIISGAALLNGLEIVDKKIEEVKVVVLGAGASAISCASHYIQLGVTLENL
                     IMCDSGGIMNTRRLDAGELNEYKEKFALDIEDGTIKDAIKGADVFLGLSKGGLVSKSM
                     IASMAPNPLVFAMANPTPEIMPEDVAEVRDDAIMATGRSDYPNQINNVLGFPYIFRGA
                     LDVRAKEITEGMKMAATRALAALAKETVPDHVAAAYGGTSLQFGPGYLIPKPFDERVL
                     IWEASAVAQAAVNEGVAEVQPEDFDIIAYRRELEGRLGLTRSLMRGVMNQAKSDVKRI
                     VFTEGDHPTVIKAAAECVREGICAPILLGRESTISDHKERLGLSFDCEVIDVRDDPRR
                     KGIYSDVLSEKRARKGVTRADAVRMLRSRTYFGSMMVAQGDAAGLVGGIDRHYPDILR
                     PCLHTIGTADDVERLVGMYMMTIKGQLLFIGDATINIYPDAETLAEIAIETAKMARRF
                     GVKPVVAMLSFSNFGSSKEYRSTRIEEAIRIVRERDPNLIIDGPMQADTALVSEIQEE
                     YPFMTFEGAANVLICPNLAAANIGYKLLQRLGGAEATGPILEGMAKPVQVLQRGDGVS
                     DVVRMAAICAVDAQRHQRERLD"
     gene            4569..6002
                     /gene="pyk"
                     /locus_tag="HA345_03320"
     CDS             4569..6002
                     /gene="pyk"
                     /locus_tag="HA345_03320"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: protein motif:HMM:NF004491.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HIH84421.1"
                     /translation="MRRTRIVATIGPASCDEDSLRTMIKAGLDVARLNYSHGTDEWRA
                     EVAGRIRKIGEECDIHVGILADLPGPKLRLGYFEGEHVLEAGTQLTLRCGYAEGVATS
                     TTLPVEYLGLAEELQPGDPVLLSDGLIQLEVKSSQGNEVICEVIEGGPISQRKGINVP
                     GTVVKLPAVGPRDEEALRHALSLGVEFIAVSYVRTAEDIQPVRRILDETKSEAWIISK
                     IEHPMALESLDEIINSSDAVMVARGDLGVEIPPEEVPMAQERIVKSARSRGLPVIVAT
                     QMLESMVFNPRPTRAEVADVANAIRHGATGVMLSGETATGQHPVEALQTMLRITRRAE
                     IEWDELMAPTDAKLLLTRAVAHAGVTLAGIAEADRILVATQHGNAARLVSAHSTSIPI
                     TAVTNSPSVARRVMLLPGVDAILCKEEDRGSTTMRNAIRHVFENNRLEVGGRVVAISG
                     SPKAMSDPTSTARLYRVGEDGVVVGDE"
     gene            6148..14631
                     /locus_tag="HA345_03325"
     CDS             6148..14631
                     /locus_tag="HA345_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84422.1"
                     /translation="MLFSSLSAIGFSPLSSAHPSQVSEWPMEGSNDTGWILLEAMGAN
                     PSTATDATGQLMLDFAPGAEISNLTFEIQVNGSDGVWADQPQLTLMDTQTSLLDWRTY
                     GDFGRAVDFLNGDPHTGRLSPTTDTGATHVLPAGVTITDLVIEALRPADPLVSFERLE
                     FEVKDWAMHPADHRLYVVTNDNVLVVDANNEPWVIDVIDLYEPTAIEVDATGGRILIA
                     SSEGVSAYSADDFTPLMSLGPIGGQSPSRVDLAVDGGGDVWAVSDCSIERYDATTGAW
                     TADPISTSSGTTATGPCAGTSDERVVPTSMFVDGSDLYVGTQDHGITMWDGTTYTHWD
                     TQNALTSDTILGFERAGDVLYISTADGGVMRKDLNTGSWLATWSSQNWLSSDDVQSMS
                     VTDDWIHILAGDVLHTYNGTSLTFTSTDFSTDLNVPSPITILPWRATEGVLRGPVNES
                     VLLIGSSGRVSVLEVGNSPSFDRTELFANSPSSDDMMSITRLGDVYWIGGADWIDRFD
                     SSQNLWIESIRTNEEGRSIATDGTDIYLGTAGGGLMVYDANGSLLQTLDEASSPAIAS
                     DFIQDMSYDAYTSTLSLSHPSQGLTVWNLSSGAVTEFNEQASGVQELDSDDVGEIATR
                     SGIVYIGSDEDGVMRIDLTTNEVIGSWQSLGADELDWAPIASDGTTVWLGLDGFGVLV
                     YDRVTGEVLDRYTASGGNGPGQGGSVMQSNDVFSVEADPYGGVLVGTSFGLERFANGQ
                     GSSISQQGRFAPREFFDTHSDSGSIWAATDRGLCRYTWTFQFDDCWDDDDDIPDDVRS
                     VRLIGNNKIYVGTENGAVVWDTTNEVVLDTWEAGEATNNAKVVVHNDIAYVGFDGAGI
                     QRYDLVNSDWLSPWDQSSNVIGGDGVTSLALGESGHTLWAGGDFGLAEIDLNTSTVLR
                     DWDKGTNSGGPTLSNWDPMHITIYGGILHYAQQLNYQNSRDLIFRVNLSTDTSLSELD
                     VGARIGTSGNTNGMNMVGDELWVGVTPSQWWTGIGAVVRWNVTNGSWADTLDSTGNIE
                     RVNAQYLGDCFPLDPADCELWVAYGENYLRRYNAANMTLLGSWDDVDGRIRGMVEFNG
                     EYLFGSLDGLLRFDPANDTWLTRWNPNNGGMPSSGDEDVYTVEVVGDDLWVGTYAQSG
                     WNTNADIHIKNGTTGQWQSIAAGSGSVPSGYPADIGECAGIVHVGMGSLGWWAPGGVA
                     RYDLSSNSWIGDFRANSGEIDNDDVRAVSCDQPNEIVYFGYDTDGIGIGRYIYGTQNQ
                     ALAPIDAGDGISEEAVFPGGLLYHNNRVLIAHVGTGAGGFSQVPVSGTTVGSGSLVDP
                     GLSSGSIVLKPTANGATAYAIARNGESTGNSRVDLLDSNGLTPGGIDSFVALSSGRIL
                     EFLSHGNKVYAVQGEDVTSGLGTSILEGTLINGSVRWDRSFSFGFEIVNEIYHDGTDL
                     WVSTIFQGLIRVDLTTGQLQPPVIGFHWNHDGIVPWNGSLVIGLMGTDSTAAGVQVYD
                     VANNTISDGKLIAALPSNFVWDFEEHDGRIWIATIGGLGVWNLTTSDWDDPFTVLDGL
                     PFPYVRELGVANGNLLVGTWGGVAELNTTTMTVVRVLNEQAGLIGTTVSGLTVLPTTT
                     IVDASGASTVFGETMFVAHDGRGITRPGYTEVPTATMVPSATRPIDMIPDNAIESITA
                     DAWGVHIATVTAPIIHWNASSGQMEDGPNPLTMAGYPPNTLVSDGTEVVSIGLPGITY
                     FAAGGPHLVDDVIQITDLMAGYIDSDGLAAVGSDGLHLFAPISHNEADRFTNRRADPL
                     TVLIAGANYDITNQTHPGRQIVLIDSETASVTSSTGAQGPNGIQLIQNAVTSVSPIQG
                     AATWMSTTTLNYTGIWDLAELDFSLESSLQNAIDNAAMSQIGRQVELGLQSPSNGSIW
                     VRLTYDWVRLEQPTEVLEFFDRPNDGGETLIARWSPSTDHGWVAYRIYVWETTEYPNG
                     LTSSDIEDLTDASGSYDARIPAWAIVSAELTTSLSTPLVDGVEYGISIVTEYSGGLLG
                     EPSNFGNFAIPIDNVPTPPTWVNATIDENQEGRVMLEWSACTELDHAFTHYWRTPIPI
                     PEDFPYRLPRATAIPAGEANTTFTQIPTNDPFWFAFVCTDESGQFDESNATIVGPVIW
                     TALEDDGTPPAPVEDIVAFDTPDDEGGHITIEWTANEEEDCAFYEIYGHIANSETLPS
                     DVVGWDIALTTFGCAPLLEGQRPGPPGGAPGGGGQGPPTQMARQDQSQDTTISVVVND
                     IAGRPIQDGIVHWFTVVAVDLWQNKDLENVTIVEATSVANVAPQPPERITNIEAWDTP
                     EDDGTSIDVSWTPSFDRDLEHYVVWVSEHPVTTVGPKWSACSEDPDECGLILVERRGW
                     AEERIEITVDTALYGGSSVSTAQSDSIQPAVKLYVTVTAHDQIDNVYLTRLETVEVTP
                     IDNRGDITPPSRLDAPTLADRPDDLGDALHVSFDLSIASDLDRYEVFTSSLPFTDAST
                     MEPAAVLERNPDLPAAVEIFSRTNSESDGDALPLAPGVETWVAVVPVDSSGNALYTDL
                     LTSSRSPIDNSLLDPGLHLPEITGVTLRWSDDGNSIIVEWDISEDAKVRSYWIYASNE
                     VFEDTRDARLVKDFVQGASYTFDAIGNNTLDQNLTHYVTVVAHDGEVHRFGVTAQALL
                     PYDPTAVPNPGDSEDAAWWEALGVQTVVILILLGMIIAAMVALFVMRRKDPSAEWAHL
                     AQGTYGIQNQERWDDDDMGMLASPTVAPPPMDAQPVGVAQVAPVDDYNFSKRRAGDLV
                     QEYDLPSVDVLVQEARYHDDNQDQYLNTQELTSAAKALRSGQQRDDDLDMSFLDDLL"
     gene            14671..15405
                     /locus_tag="HA345_03330"
     CDS             14671..15405
                     /locus_tag="HA345_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HIH84423.1"
                     /translation="MSDERPGDSVFTTVAFRNTTVLARSAHEERLIRFAEAARCPPLE
                     VEFVRAEIDRSLEETTLDVGLMRIEWSTDGDLSIDIRTNPEIRGPISAISIPAPRWPR
                     RFRGIKHGAWSAYVTARDTAERTGSDIALLIHDYSIVDGDRCTPILLDEDGVAYAPGE
                     EQGAVESVTLTLIEHELESAGIPLRTAWLTEELVRRCRELVVVGTGIGALAIEEIDGH
                     EIPVGDCLLAPIERGLKEAWTMSGVQ"
     gene            15381..17696
                     /locus_tag="HA345_03335"
     CDS             15381..17696
                     /locus_tag="HA345_03335"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012345.1,HMM:NF012640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84424.1"
                     /translation="MDDVRGSVRRMIHRRLPRFDSDQPLVALQRSLRTIRSTNLSPDE
                     LLLHSGGPVSDIARHSLLMAPAYHRTLLKQPSPIDASEKPSSSSPLNGEIQFPSISPM
                     VVEVQQWNGKGWITRETCTASNLAEAMRLARLGTIQPTPDRLPSLGTVTGLLGYDLVQ
                     WTSPVDILYRPNEGTVLGVLYPLDAYIHHNRELDVMTLVSAEDHPWANLPIEEVSIIP
                     QKPLETIHSMNPVSTSDAHHAHQVQRIIESIRGGHLYQANYGRTWSGPTDIHPWEIFE
                     RLVEVNPAPFSGWLHAPDLDLAIASSSPELLLEMGLDCVSTRPIKGTRPRGMHLEADT
                     AEVTTMLTSRKEIAEHMMLVDLEMNDIRRISRAGSTIWADWRIESLPNVHHMVSTVSG
                     HPASDVDVPSALQHLFPGGSITGCPKDVTIAAISELEEAPRGAWTGSLGYDDPLCGQG
                     VWNILIRTMEAHSTDDGWHAIIKAGGGITAESDPASEVEEAKLKAAALIEACWPKSNL
                     DPLTQPVSAEPRIEPIRVVDDRTSALLTRLHTDSPRVHDLPDPPRVLFVNNLDSFTWN
                     IVDELRICGAEVIIVSGRGPESNVDIGVLLETHSPSHIVLGPGPSEPTSSPLTMAFAR
                     WALDTNSPLPTLGLCLGHQALGIADGWALKRTPSGAVHGVPMSIEHVSSGLFIHSEDS
                     PTMMRYHSLSIAAPKENTKQKLAANAWVDPTGIIMGVEAIDRPVHGIQFHPESCGSPE
                     GRALLKTFLDLGRDTSRSPLEDSPQASEQQD"
     gene            17734..18096
                     /locus_tag="HA345_03340"
     CDS             17734..18096
                     /locus_tag="HA345_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84425.1"
                     /translation="MATCRYCRGVYPQDQFIRGNGPRYLVCVRCGVEQGFVTEDEVPQ
                     LYSDEITRARTSLFARRYGIWATLIVAWSGWLTMGQGITFWTPAILVALILMSVLAPI
                     RHILGAARFKAELRRLTP"
     gene            18425..>18984
                     /locus_tag="HA345_03345"
     CDS             18425..>18984
                     /locus_tag="HA345_03345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84426.1"
                     /translation="MQNKNTNKKLSMLIALFMVLMAASVGVSADGTDPLDGSDGGADW
                     DGDGLTNAEEQQQGTDMTRADSDGDGLPDGWEVNHGLNPNSGGDANADPDGDGLTNAQ
                     EYARGTNPNSADTDGDGKPDSTDAFPNDPNDGESSDQDGDGIPDAYDPDYQDSETGSG
                     NGGTNGGGESNDQGQGEQGQGQGQGQG"
BASE COUNT         4494 a         4579 c         4586 g         4652 t
ORIGIN      
        1 cctccacatc tattgtatcc gcatccatct tccgtgtcta gtggatttcc aggctcgttg
       61 atttggatag tagtcatcaa aggattttca ttgaacgcat ccgtaatcac agtcatgtat
      121 ccattccatg tgttatttcc agcatctcca acatacccaa acgcaacttt tcctgctgca
      181 ccagcagtca ctactgggaa accagtgcca acaattccgg caggcggcgc aatcatcatt
      241 gcattactcc aagtttctcc ttcatcgcga gagtatgcat agtagggcat gttatcggac
      301 cccatccaca ttgcatgcac gttatcatca tcatcgatag caacttgcgc ttcttctgca
      361 ttccaagtat ccgcggttcc agattcatcc gttgggaggg ggtgttcggt ccatgtgaat
      421 cccccatcgg tgctacggta aatcgagtac ccactcccac tacaaccggc atttcctctg
      481 tagaaattac catttgcacc tccttcgata tgcgcactca atcccccact cccgcatcct
      541 aatggcgctc caggaacctc tgggctccat gtatttccac catcaaaact cgtggagcag
      601 agaggagcct cccaatttcc gttaatacag aaaacccagg ttgttgggtg taaagcagca
      661 gggtatggag aggatgaaat cgtttgatga tcttgaacgg aatacgaagt tgcaggtgta
      721 ggaggagacc aagaagcacc ctcattgtcg gaccattcta cagtcattcc tagaagagca
      781 tgcatatcga atttcatgat nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnatgcata tcgaatttca tgattcgatc
     1141 agtccatttg tcaacataga catagggatc attgctattt ggaacaggta acaatggatt
     1201 gtaagtatct tcacatgaat aatcggacaa attagtcatc ccaatcatac cactacattg
     1261 gactatagcg gttgatccaa ggggcccatt accccaactt gtaatgtaca aattatcatc
     1321 tgaggtaatt ccgatagttg gttcgaacgt actcattcca attccataat atgacccttg
     1381 agaccaaaat ggcgtatttt caccagtcaa attcacagta atatttgcag attgaaccgc
     1441 agaatcgttg agcgcatcga ctcctcctgc gtaatgatac catgttgttt caggaatttc
     1501 cttcccaaaa tcgaagggcg aatcttccgc ctcaggaact tcatcatccc caccaaagca
     1561 accactcaaa ctccctccta tcatcaacag agtgagtaac atagcagagg ttactctcat
     1621 tgcaatcatt tcttcggagg ggcaatctcc cttcaacatc atggttgagg aaaaatggtg
     1681 cagaggacag gattcgannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnccc agcccctttg accactcggg tacccctgct tgggaattcg
     2101 acgactttcg cccctcacat gaaaccatcg gcagagccga aagattagtc caatcgttca
     2161 cgttgatggc gctgagcatc tacggcacaa atggctgcca ttcgtacgac gtcactcacc
     2221 ccatcgccac gctggagcac ctggactggc tttgccatac cttctagaat aggtcccgtg
     2281 gcttctgccc cacctaggcg ttgcagcaat ttgtagccaa tgtttgctgc agcaaggttt
     2341 ggacagatta ggacattcgc agccccctcg aatgtcatga atgggtactc ttcttgaatt
     2401 tcggatacca aggcagtgtc tgcttgcatg ggaccatcaa taattagatt tggatcacgt
     2461 tctcgtacga tacgaatcgc ctcttcgatt cgcgtactcc gatattcctt tgaggatcca
     2521 aagttagaga atgagagcat agctactact ggcttcactc caaatcgacg agccatcttt
     2581 gcagtttcaa ttgcaatttc agctaacgtt tcagcatcag gatagatgtt aatcgtagca
     2641 tcaccaatga agagtaactg acccttgatt gtcatcatgt acatccccac gagccgttca
     2701 acatcatctg cagttccaat tgtatggagg catggtctga gaatatctgg atagtgacga
     2761 tcgatacctc ccacaagccc ggcagcatcg ccttgagcga ccatcattga accgaaatag
     2821 gtcctcgatc gtaacatcct caccgcatct gctcttgtta caccctttcg tgcacgcttt
     2881 tcgctgagta catcggagta gatacccttc cgacgggggt catctctaac atcgataact
     2941 tcgcaatcaa aggagagtcc aagccgttct ttatggtcag aaattgtaga ttctcgacct
     3001 aacaagattg gagcgcaaat accttcacga acacattctg cagctgcttt gatgacagtg
     3061 ggatgatcac cttcagtgaa tacgatacgt ttcacatctg attttgcttg attcatgact
     3121 ccacgcatca ggctgcgagt caatccgagg cgcccttcta gttctcgacg atatgcaatg
     3181 atatcgaaat cctcaggctg aacctccgca acaccttcat tgacagccgc ttgagcaaca
     3241 gcagaagcct cccaaattag gactcgttca tcgaagggtt ttggaataag gtatccgggc
     3301 ccaaattgga gtgatgtacc cccatacgct gcagccacat ggtctggcac agtttccttt
     3361 gcgagcgcag ccaaggcgcg tgttgcagcc attttcatac cttcagtgat ttctttggca
     3421 cgaacatcga gggcgccacg gaagatgtaa gggaatccga gaacgttgtt gatttggttt
     3481 ggataatctg aacgaccagt tgccataatc gcatcatccc gcacttcagc gacatcttct
     3541 ggcatgattt ctggcgtagg gttcgccatt gcgaaaacaa gtgggttggg tgccatactt
     3601 gcaatcatag atttggatac gaggccaccc tttgagagtc cgagaaagac atcagcaccc
     3661 ttgattgcat ccttgattgt accgtcttca atatcaagtg cgaatttttc tttgtactca
     3721 ttgagttcac cagcgtccag acgtcgcgtg ttcatgatgc caccagaatc gcacatgatg
     3781 agattctcca aagtaacacc gagttggatg tagtgagatg cacaggagat tgcacttgca
     3841 ccggctccaa gaacaacaac tttgacctcc tcaattttct tatcaacaat ttcgagacca
     3901 ttcagtaatg cagctcccga gatgattgct gtgccatgtt gatcgtcatg catcactgga
     3961 atatccaact cttcgacaag ccgtcgctct atttcgaaac attctggagc tttgatatcc
     4021 tccagattga tgcctccgaa ggttggtgca atgttcttta ctgtctgaac aaaatcgtcg
     4081 atgtcttccg aatctacttc gatgtcaaac acatcgatat cggcgaaggc cttgaacagc
     4141 aaacccttcc cttccatgac tggttttccg gcaagtgctc caatattgcc cagtccgaga
     4201 actgccgtgc cgttactgat tactgcaact agatttcctt tcgccgtgta acggtaagcg
     4261 ttagcctcat ctttctcaat ctcaagacaa ggatatgcca cacctggcga gtaggcaaga
     4321 gagagctctc gttgggtgga atggggtttt gtcggaacaa ccgttagttt cccttgaggt
     4381 gctgcctcgt ggtactcaag agcgtcccgt tccagagtat tgtccttgct catcctcccc
     4441 tctcccagcg ttgttctgct ttgggttttc gcactatagt cacggcaaga cccattcctt
     4501 tgacaaaagg taattctcca gcatctcaat aggtttcttt gaagcgcaga cgggtgtgat
     4561 gccacttcat gcggaggaca cgtatcgttg cgacaatcgg cccagcctca tgcgatgagg
     4621 attctcttcg tacgatgatc aaggctggac ttgatgtggc acggttgaat tacagccatg
     4681 gcactgatga gtggcgggct gaggtcgcgg gacgcattcg aaagattgga gaagagtgcg
     4741 atattcatgt cgggattcta gctgatcttc caggtcctaa acttcggctt gggtattttg
     4801 agggtgaaca tgttctcgaa gccggtacac aattgactct tcgctgcgga tatgcagaag
     4861 gtgtagccac atctacaact ctgccagtag agtaccttgg tcttgccgag gagttacaac
     4921 caggtgaccc agtccttctt tcagatggtt tgattcaact ggaagtaaaa tccagccaag
     4981 gcaatgaagt aatttgtgaa gtcattgaag gcggaccaat atctcagcgt aaggggatta
     5041 acgtgccagg cacggtagta aaattaccag cggttggccc acgtgatgag gaagctctac
     5101 gtcatgcgct gtcacttgga gttgaattca tcgcggtatc ttatgtgagg actgctgaag
     5161 atattcaacc ggttcgacgt atattggatg aaacaaaatc cgaggcatgg attatttcaa
     5221 aaatcgaaca tccaatggcc cttgagagcc tagacgaaat catcaattct agcgatgctg
     5281 ttatggtagc gagaggtgat cttggtgttg aaatcccacc cgaggaagta ccaatggctc
     5341 aggaacgtat tgtcaaaagc gctcgcagtc ggggcctccc agtcattgtt gcgactcaga
     5401 tgttggaatc gatggtgttc aatcctcgac cgacacgtgc cgaagtcgca gatgttgcaa
     5461 atgcaattcg tcatggagcc acaggcgtca tgttgtctgg tgaaacagca acaggccaac
     5521 atcctgttga ggctctgcag accatgttga gaatcactcg ccgtgcagag attgaatggg
     5581 acgaactcat ggctccaaca gatgctaaat tacttctcac acgggcagtc gctcacgcag
     5641 gcgtaaccct cgctggtatc gcagaagccg atcgaattct tgtggcgacc cagcatggaa
     5701 atgccgctcg acttgtttca gcccattcca catcgattcc aatcacagcg gtgacaaatt
     5761 ccccttcggt cgctcgcaga gtaatgcttc tcccaggtgt ggatgccatt ctttgcaagg
     5821 aagaagatcg tggaagcaca acgatgagga atgctattcg ccacgtgttt gaaaataatc
     5881 gcttggaggt tgggggccgt gttgtggcca tcagcggttc tccaaaggcg atgagcgatc
     5941 caacatccac tgcacgattg tatcgtgttg gagaggatgg cgtagttgtc ggtgatgaat
     6001 gagagttcag acagatgctc aaatctgatt cttctaccca cacacgaggt agtgtctttg
     6061 aaatgttatt ggagttgcca tatgctcatg cttcagcccc attcgccagg gtccgcgcct
     6121 cgttcagcgg tcctgatggt attgctgatg ctctttagca gcctttcagc cattggtttc
     6181 tctcctctgt caagtgccca cccttcccaa gtatccgaat ggcccatgga aggctccaat
     6241 gatactggtt ggattttact tgaggcgatg ggagccaatc catctactgc aacagatgca
     6301 acggggcagc ttatgcttga ttttgcaccc ggtgccgaaa tctccaatct tactttcgaa
     6361 attcaggtta atggctcaga tggtgtttgg gcagatcaac cccaacttac gttgatggat
     6421 acacagacca gccttctcga ttggcgaact tacggcgatt ttggccgcgc cgtcgacttc
     6481 ctgaatggcg accctcatac ggggcgcctc agcccgacta cagatacggg agcgacgcac
     6541 gtacttccgg ctggagtaac aatcactgac cttgtaatcg aagctttacg gcccgcagac
     6601 cccttagtat ccttcgaacg acttgagttc gaagtcaagg attgggcaat gcaccctgca
     6661 gatcatcgat tgtatgtcgt taccaatgac aatgttctcg ttgtcgatgc caacaatgaa
     6721 ccgtgggtta tcgatgtaat cgacttgtat gaaccgacag caatcgaggt tgatgctact
     6781 ggcggacgaa tcctcattgc cagttcagag ggggtttcag cgtactctgc tgacgatttc
     6841 actccgttaa tgtcacttgg tccaattggg ggccaatccc cctcaagagt agatctcgct
     6901 gtggatggtg gcggcgatgt atgggccgtc agcgattgtt cgattgagcg ttatgatgca
     6961 acgacaggcg cttggactgc tgatccaatc tccacttctt ctggaacaac agctactggg
     7021 ccgtgtgcag ggacttcgga tgaacgagtc gtaccgactt ctatgttcgt cgacggctct
     7081 gacctctatg ttggaacaca agatcacgga atcacgatgt gggatggcac cacctatact
     7141 cattgggata ctcagaatgc gttgactagt gacacaattc ttggcttcga aagggctggt
     7201 gacgtactct acatctctac agcagatggt ggagttatgc gaaaggatct caatacagga
     7261 tcctggttag ccacctggtc ttcacagaac tggctctcaa gtgatgatgt tcagagcatg
     7321 tcagttacgg atgactggat tcacattctt gcaggggacg ttctccatac ctacaatggc
     7381 actagcttaa cattcacttc gacggatttc tcaacggacc tcaatgtgcc gagcccgatt
     7441 acaatactgc cttggagggc aacggaagga gtattacgcg gcccagtcaa cgaatcagtt
     7501 ctattgattg gttcttcagg acgggtatca gttcttgagg taggtaattc accttctttc
     7561 gatcgcaccg aactcttcgc taactcacct agttctgatg acatgatgag cataacccgc
     7621 ctcggcgatg tctactggat tggtggtgct gattggatcg atcgtttcga ttcttcgcaa
     7681 aacctctgga ttgagtcaat tcgaaccaac gaggaagggc gatccatcgc taccgatggc
     7741 actgacattt accttggcac cgctggcggt ggcctgatgg tctacgatgc taacggttct
     7801 ctcctccaga cgttggatga ggcttcttca cccgcaattg catcggactt cattcaagac
     7861 atgtcttacg atgcatacac atccacgctt agcctgtcgc acccaagtca aggtttgaca
     7921 gtatggaatc tgagtagtgg tgctgtgact gagttcaatg aacaagcaag tggtgtgcag
     7981 gaactcgata gtgacgatgt tggagaaata gcaactcgtt caggtatcgt ctatatcggc
     8041 agtgatgagg atggcgtcat gaggattgat ctcacaacta acgaggtcat tggatcatgg
     8101 caatcgcttg gtgcagatga gcttgattgg gcgccaattg caagtgatgg aactacagtg
     8161 tggttgggcc ttgacgggtt cggagtccta gtgtatgatc gtgttactgg ggaagtactc
     8221 gatcgttaca cagcaagtgg tggcaatggt ccaggccaag gagggtctgt aatgcaatca
     8281 aacgatgtct tctcggtcga ggccgaccca tatggcggcg ttcttgttgg gacgtcattc
     8341 ggtctcgaac gctttgcgaa tggccaaggg tcatcgatat ctcaacaggg acgtttcgct
     8401 cctcgcgagt tcttcgatac ccattcagat tcaggcagta tttgggcagc cacagatcgc
     8461 ggattatgtc gatacacctg gacattccag ttcgatgact gctgggatga cgatgacgac
     8521 ataccggatg atgttcggag cgttcgcctt atcggtaaca acaaaatcta cgtcggtaca
     8581 gaaaatggtg ctgtagtatg ggataccact aacgaagttg ttcttgatac atgggaagcg
     8641 ggagaggcca ctaacaatgc gaaagtagtc gttcacaacg atattgcata cgtgggcttc
     8701 gatggagcag gaatccagcg ttatgatctt gtgaatagtg actggctctc tccatgggat
     8761 cagagctcga atgttattgg tggcgacggt gtgacatctc ttgcattagg tgagtcaggt
     8821 catacgcttt gggcaggtgg cgatttcggt ctagccgaga ttgatttgaa cacttcaaca
     8881 gttctccgtg attgggataa gggtacaaac agcggtggcc ccactctatc taattgggat
     8941 ccgatgcaca tcacgattta tggaggcatt ttgcactatg cacaacaact gaattaccag
     9001 aattctcgag atctcatctt ccgagtcaat ctctccacag ataccagtct ttccgagctc
     9061 gatgtaggtg ctcggattgg gacttcaggt aacaccaatg gcatgaatat ggttggcgac
     9121 gaactgtggg ttggagtcac tccatcacag tggtggactg gaattggagc agtcgttcgc
     9181 tggaatgtga ctaacgggtc ttgggctgat actcttgatt caactggaaa tattgaacgc
     9241 gtaaatgcgc agtacctcgg cgattgtttc ccattggacc cagcagattg tgaattatgg
     9301 gttgcttatg gagaaaatta tcttcgtcgc tacaatgctg caaatatgac tctactcggg
     9361 tcttgggatg atgttgatgg tcgtatacgt ggcatggttg aattcaatgg agagtaccta
     9421 tttggctcac tagatggatt acttcgcttt gatcctgcca acgatacttg gttgactcgt
     9481 tggaacccca ataatggagg catgccttcc tcaggggacg aggacgtcta cacagttgag
     9541 gtagtgggtg atgatctctg ggtagggaca tatgcacagt caggttggaa cacaaatgcc
     9601 gacatccaca tcaagaatgg aaccacgggc caatggcaaa gcattgctgc aggatcgggc
     9661 tccgtgccat ccggataccc tgctgatatc ggagaatgtg caggaatcgt tcacgtggga
     9721 atgggctcac ttggttggtg ggctcccggg ggagttgccc gctacgatct ttcatccaat
     9781 tcatggattg gtgatttccg agctaacagc ggagaaattg acaacgatga tgtccgtgct
     9841 gtgagttgcg atcaaccaaa tgagatcgta tacttcggct acgacacaga cggtattggc
     9901 attggacgct atatctacgg aacacagaat caggcacttg ctccaataga cgccggagac
     9961 ggcatctccg aggaagccgt cttccctggc ggactactat accacaataa tcgcgtacta
    10021 attgcacacg tcggcaccgg tgcaggagga ttctctcaag ttcctgtatc gggtacaacg
    10081 gtcggctccg ggtctctagt tgatccagga ttgagtagtg gcagtattgt gcttaagccg
    10141 actgcaaatg gtgcgactgc atatgccatt gcacgcaatg gtgagagtac tggtaacagc
    10201 cgtgtggatc ttctcgattc caatggctta acgccgggag gaatcgactc gttcgtagct
    10261 cttagctccg gccgcatcct cgagttcctc tcccatggta acaaggtata cgcagtccaa
    10321 ggcgaggatg taacttctgg tttgggtaca tcgattcttg aagggaccct gattaatggc
    10381 tcagttcgct gggatcgttc cttctctttc ggttttgaaa ttgtgaatga aatatatcac
    10441 gatggcacgg atctttgggt ttcgaccatc ttccagggtc ttattcgcgt agatttgact
    10501 acaggccaat tacagccccc agtcattggt ttccattgga atcatgatgg cattgtccct
    10561 tggaatggta gccttgtaat cggcctgatg ggaactgatt ccactgctgc tggcgtccag
    10621 gtgtatgatg tggccaacaa cacaatctct gatggcaaac tcatcgctgc ccttccaagc
    10681 aatttcgtat gggactttga ggagcatgat ggtcgaattt ggattgcaac aatcggcggt
    10741 cttggtgttt ggaatctcac gacctcggat tgggatgatc cattcacggt tcttgatggc
    10801 ctacctttcc catatgttcg cgaacttggc gttgctaatg gcaatttact agtcggcaca
    10861 tggggggggg tagcggaact taacacgact acgatgacag tggttcgcgt cctcaacgaa
    10921 caggcaggtc tgattggaac tacagtttcg ggcctgacag ttctgcctac aacgactatt
    10981 gttgatgctt caggcgcttc tacagtgttt ggcgagacga tgtttgtcgc ccatgatggc
    11041 cgaggcatca ctcgtccagg ttacacagag gttcctacgg cgacgatggt accgtcagcc
    11101 acacgcccaa tcgatatgat tcctgacaat gcgattgaat ccatcacagc agacgcatgg
    11161 ggcgtccata ttgctacagt aacggccccc atcattcact ggaatgcaag ttctggtcag
    11221 atggaagatg ggcctaatcc acttacgatg gcaggctatc cacccaatac tttggtcagt
    11281 gatggcaccg aggtcgtatc cattggacta cctggaatta cttacttcgc agcaggagga
    11341 ccccatctcg tcgatgatgt aatccaaatt acagatttga tggcgggcta tattgattca
    11401 gatggtcttg cagccgttgg ttctgatggc ttgcatttgt tcgccccgat ttcacataat
    11461 gaagcagatc gattcactaa tcgccgtgct gatccgttga ctgtactcat tgctggtgcg
    11521 aactatgaca ttacgaacca gactcatccc ggaagacaga ttgtactgat tgattccgag
    11581 accgcctcag ttacatcttc tacaggtgcg caagggccca acggaatcca actcattcag
    11641 aatgccgtga catctgtgag tcccattcag ggtgcagcaa catggatgtc gaccacgact
    11701 ctcaattaca ctggaatatg ggatttagca gaactcgact ttagtttgga atcatccctc
    11761 caaaatgcga ttgataatgc tgcgatgagt caaatcggac gccaagtcga acttggtctt
    11821 cagagcccgt cgaatggctc catctgggtc cgactcacct atgattgggt ccgtctcgaa
    11881 caacccactg aggtattgga gttcttcgat cgtccaaatg atgggggtga gaccctcatt
    11941 gctcgttggt caccatccac agatcatggc tgggttgcat accggattta tgtgtgggaa
    12001 acaacggaat atccgaatgg tctcacatca tcagatatcg aagatctaac agacgccagt
    12061 ggaagttacg atgcccgaat tccagcgtgg gcaattgtct ctgctgaact cacaacatca
    12121 ttgagtaccc cattagtaga tggtgtggaa tatggaatat ccattgtaac ggagtattct
    12181 ggaggattgt taggtgaacc atctaatttc ggtaactttg caattccaat tgacaatgtc
    12241 ccaactccgc ctacatgggt gaacgccaca atcgatgaga atcaagaggg tagagtgatg
    12301 ctcgaatggt ccgcatgtac tgaacttgat catgccttta cacattattg gaggacccca
    12361 attccaattc cagaagattt cccgtatcgt cttcctaggg caactgcaat acctgcaggg
    12421 gaggcgaaca ctacctttac tcaaatccca acgaatgatc cattttggtt tgcgtttgtg
    12481 tgtactgatg aaagtggcca attcgacgaa tcgaatgcca caatcgtcgg tcccgtaata
    12541 tggactgctt tggaggatga tggcacccca cctgctccag tcgaagacat cgttgcgttc
    12601 gatactcctg atgatgaagg tggccacatc acgattgagt ggacagcaaa tgaggaggaa
    12661 gactgcgctt tctacgaaat ctatggccat attgcaaact cggaaacatt gccatcagat
    12721 gttgttggct gggatatcgc attgaccact ttcggctgcg ctccattatt ggaaggacaa
    12781 cgtcctgggc cacctggagg agctcctggc gggggcggtc aaggccctcc aactcagatg
    12841 gcccgacagg atcaatctca ggatactaca atttcagtag tggtgaacga tattgctggt
    12901 cgaccaattc aagatggcat tgtccactgg ttcacagtgg tcgcagttga tctatggcag
    12961 aataaggacc tagagaatgt tacaattgtt gaggctacat cggtcgcgaa tgttgcacct
    13021 cagccccctg aacgtatcac aaacatcgaa gcatgggata ctccggagga tgatggcacc
    13081 agcatcgatg ttagttggac acctagtttt gatcgggatt tggaacatta tgtggtatgg
    13141 gtgtccgagc atcccgttac taccgtgggt ccgaagtgga gtgcttgttc agaagacccc
    13201 gatgaatgcg gcctaatctt ggttgaacgc cgtggatggg cagaggaaag aatcgaaatt
    13261 acggttgata cggccctgta tggtggaagt tcagtcagca cagcacagtc tgattcaatt
    13321 cagcccgcag tcaagctcta cgtgactgtt acagcacacg atcaaatcga caatgtctac
    13381 ctgactcgcc ttgaaacagt ggaggttaca ccaattgaca accgaggaga cattacccct
    13441 ccatcacgtt tggatgcgcc gactttagcg gatcgcccag acgatttggg tgacgccctc
    13501 cacgtttcct ttgatttgag tatcgcgagc gacctcgatc gttacgaggt atttacttcg
    13561 tcattaccat ttacagacgc gtctaccatg gagccagcag ccgttcttga gaggaatccg
    13621 gatttaccag cagcggttga aatcttctct cgcacaaatt cagaatctga cggagacgcc
    13681 ctccctcttg caccaggagt cgagacttgg gttgctgttg tgcccgttga cagctcaggt
    13741 aatgcgttgt atacagatct cctgacttcg agtcgctctc cgattgacaa ctcccttctt
    13801 gatccaggac tccatcttcc agagattact ggagtaactc tacggtggtc tgatgatgga
    13861 aattcgatta ttgttgaatg ggatatctct gaagatgcaa aggtccgatc ttattggata
    13921 tacgcctcaa acgaggtctt tgaggacact cgagatgcac gactggtcaa ggacttcgtt
    13981 cagggtgcgt cctacacgtt cgatgcaata ggtaacaata ccttagatca aaatctgact
    14041 cattatgtga cggttgttgc acatgatgga gaggtccacc gatttggcgt aacagcgcaa
    14101 gccctgttac catacgatcc aaccgctgtc ccgaatccag gtgactctga agatgcagca
    14161 tggtgggaag ccctcggtgt ccagaccgta gttatcctca tcttactcgg catgattatc
    14221 gccgcaatgg tagccctctt tgtcatgcgt cgaaaggatc cgagtgctga atgggcacat
    14281 ctagcgcaag gaacctatgg aatacaaaat caggaacgtt gggatgacga tgatatgggt
    14341 atgctcgcat cgcccacagt tgccccacca ccgatggatg cgcaacctgt tggcgtagca
    14401 caagttgctc cagtcgatga ctacaacttc tctaagcgga gagccggtga tctcgttcag
    14461 gagtatgatt taccttccgt tgacgtacta gtccaagagg cgcgctacca tgatgataat
    14521 caggatcaat atctcaatac acaggaattg acgagtgctg cgaaggcatt gcggtctgga
    14581 cagcagcgag atgatgatct tgatatgtcg ttcctcgatg accttctctg aacagagaag
    14641 cctcttccgt tcaggcgcgt tcctaccggt atgagcgacg agcgacccgg ggattccgtc
    14701 ttcacgacgg ttgcattccg gaacaccaca gtccttgcac gttcagcgca cgaagaacgc
    14761 ctaatccgat tcgcagaagc tgcacgatgt ccccctctag aggttgaatt cgtcagggct
    14821 gaaatagatc gcagtttaga ggaaactaca ctcgatgttg gtttgatgcg catcgaatgg
    14881 tctacagatg gggacctttc gatcgatata cgtacgaatc cagagattag gggacctatc
    14941 tctgcgatta gtattccagc ccctaggtgg ccccgacgat ttcgtggcat caagcacgga
    15001 gcatggtcag catacgttac agcgagggat actgctgagc gaacaggttc agacattgct
    15061 ttactgattc atgattattc catcgtagat ggagatagat gcacacccat cctcttggac
    15121 gaagacggtg tagcttacgc cccaggagag gaacaggggg cggtcgaatc tgtgactcta
    15181 acgttaattg agcacgaact tgaatcagcc ggcatcccac taaggacagc ttggttgact
    15241 gaagaactag tgcgccggtg tcgtgaattg gtagttgttg gaacaggtat aggcgcactc
    15301 gccatcgaag agattgatgg tcacgagatt ccagtaggtg attgcctcct cgccccgatt
    15361 gagcgtggtt tgaaggaagc atggacgatg tcaggggttc agtgaggcgt atgattcatc
    15421 gacgcctacc tcgattcgat agtgatcagc cgcttgtagc cctccaaaga tccttgcgaa
    15481 ctatccgttc aaccaatcta tcccccgacg aactcctcct tcattctgga ggcccggtat
    15541 cggacatcgc ccgtcattca ctactgatgg cgcctgccta tcaccgcact ttactcaagc
    15601 aaccctctcc aattgatgca tcagagaaac cctcctcgtc ttccccgttg aacggggaaa
    15661 ttcagtttcc ttcaatctcc ccgatggtag tcgaagttca gcaatggaac ggcaaaggtt
    15721 ggatcactcg cgagacttgt actgcatcga atctcgctga agcgatgcgt cttgcgcgtc
    15781 ttggaaccat ccaacccact cctgatagat tgcctagcct tggaacggtt accggcctcc
    15841 ttggttacga tctagttcag tggacttcac cagtcgacat tctctatcgg cccaatgaag
    15901 gaacggttct tggtgtcctg tatccgcttg atgcctacat ccatcacaat cgagaactcg
    15961 acgtcatgac ccttgtctct gctgaggatc atccgtgggc gaatttaccg atcgaggagg
    16021 tatctattat tccacagaag cccttggaaa ccatccactc aatgaaccct gtcagcactt
    16081 ctgatgcaca tcacgcacat caggttcagc gtattatcga atcaatccgt ggtggccacc
    16141 tctaccaagc gaactatggt cgtacttgga gtgggccaac cgatatccat ccatgggaga
    16201 tattcgaaag attagttgag gttaatcccg ctcccttctc aggttggctt catgctcccg
    16261 atctcgacct tgccatcgct tcttccagcc ctgaactcct gctagagatg gggcttgact
    16321 gcgtgtctac acgtccaatc aaaggcactc gtccaagagg catgcatctg gaagccgaca
    16381 ctgctgaagt gacgacgatg ctgacatctc gtaaggaaat cgcagagcac atgatgctag
    16441 tcgaccttga gatgaacgat atccgccgaa ttagtcgagc agggtccaca atctgggcgg
    16501 attggcgaat agaatcattg ccaaacgtac accacatggt tagtaccgtc tcaggccatc
    16561 ctgcctcaga cgtcgatgtt ccatccgcat tacagcatct atttccgggc ggttccatca
    16621 ccggttgtcc aaaggatgta acgatcgcag caatttctga acttgaagag gctcctcgag
    16681 gcgcatggac tggatcactt ggctacgatg atccattgtg tggacagggt gtctggaata
    16741 ttctaattcg gacaatggag gcccattcta cggacgatgg ctggcatgct atcatcaagg
    16801 caggaggcgg tattacagcc gaatctgatc cagcatccga ggttgaagaa gcgaaattga
    16861 aggcagcggc actgattgaa gcttgttggc caaaatcaaa tttggaccca ttaactcaac
    16921 ccgtttcggc agaacccagg attgaaccca tccgtgtcgt cgatgatcga acatctgccc
    16981 tcttgacacg cctccatacc gattcacccc gtgttcacga cttacccgat ccacctcgtg
    17041 tcctttttgt gaataactta gattccttca catggaacat tgtcgatgaa cttcgaatat
    17101 gtggggccga ggtcatcatc gtgtctggcc gtggaccgga atcgaatgta gacatcgggg
    17161 ttttgcttga aacacattcc ccctcacaca tcgttctcgg acctggaccc tctgagccaa
    17221 catcttctcc cctcaccatg gcattcgccc gttgggcatt agacaccaat tcacctctgc
    17281 cgacacttgg cttatgcctc ggccatcagg cccttgggat tgcggatggt tgggccctca
    17341 agcgcacccc tagcggggct gttcatggtg ttcccatgag tattgagcac gtatcctcgg
    17401 gtttattcat ccattcagaa gattccccga caatgatgcg ctatcatagc ctcagtatcg
    17461 ctgctccgaa ggagaacaca aaacagaaac tggctgctaa tgcatgggtc gatcccacag
    17521 gtataatcat gggtgttgag gcaattgacc gtccagttca tggaattcaa ttccatcctg
    17581 aatcatgcgg aagtcctgag ggccgagctt tactcaagac cttcctagat ctcggacgtg
    17641 atacttctag aagccccttg gaggactccc ctcaggcctc tgaacagcag gattgaagga
    17701 gtcggcgtga ttccgcagga atgagagatt cggatggcta catgtcgcta ctgcagagga
    17761 gtatatcctc aagaccagtt tatccggggc aatggtccac gatatcttgt ctgcgttcgt
    17821 tgtggcgttg agcaaggttt cgtcacagaa gatgaggtgc ctcagctcta ttcagatgag
    17881 ataacccggg ctcgcacgtc actctttgcc cgtcgttacg gaatttgggc aacactcatt
    17941 gttgcttggt ccgggtggct cacgatgggt caaggaatca ccttctggac tccagcaatt
    18001 cttgttgctt tgatactcat gtcagtcctt gcaccgatcc gccacatcct tggagcagcc
    18061 cgtttcaagg cggaactccg ccgtcttacc ccctaatttg gaacacggat gatgcgggtt
    18121 tcatataccc caaggccgtt tcactagaca gagggagcga agggcaccct agaacgaaat
    18181 gtggcttaga atggcaaaaa tcggaggact ggagcgaagt aacgagaaga atcgggcccc
    18241 tgatttagtc agggattgcg ttgcaatccg tttcttcccg ctccatgaag cgaatagccc
    18301 cagtgctaac cacacaatcg attcaaccgt cgcatcccgg agttcgaacg ccatgcactg
    18361 catgactgat cccggagaga gagaacggcg ggttctctga aacaaagcaa aggaaatgaa
    18421 aactatgcaa aacaaaaaca cgaacaagaa attgagcatg ctaattgcac tgtttatggt
    18481 actgatggcc gcgtctgtag gagtatctgc agacggaacc gaccctcttg acggctccga
    18541 tggtggagct gactgggacg gtgacggttt gacgaacgcc gaggaacagc agcaaggaac
    18601 ggacatgacc cgcgcggaca gcgacggcga cggattgcca gacggatggg aggtcaatca
    18661 cggcctcaac cctaactctg gtggcgacgc taacgcagat ccggacggcg atggtttgac
    18721 taacgcccag gaatatgcgc gcgggaccaa cccgaacagc gctgacaccg acggtgacgg
    18781 taagcctgac tccactgacg cgttcccgaa cgacccgaat gacggtgagt cctcggacca
    18841 ggacggcgac ggcatcccag atgcctacga ccccgactac caggattctg agaccggcag
    18901 cggtaacggc ggaactaacg gcggcggcga gtccaatgat cagggccagg gcgaacaagg
    18961 tcagggccaa ggtcaaggac aagg
//
LOCUS       DUKB01000097            8537 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_171707, whole genome shotgun sequence.
ACCESSION   DUKB01000097 DUKB01000000
VERSION     DUKB01000097.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8537)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8537)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8537
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_171707"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(133..3003)
                     /locus_tag="HA345_03350"
     CDS             complement(133..3003)
                     /locus_tag="HA345_03350"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012403.1,HMM:NF012493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH84427.1"
                     /translation="MTLQNPSTGQRTWAAIESDLKIKQPASDQNMTLHFGRWEDQPHQ
                     HLPVARMFAGPWKGILVADEVGLGKTISAMISIRELHARGETGGILIACPGSLRSKWK
                     NELAHRVDLEAKTPATCASFLEELNALQNGSNNVVIVSHGVLRRAETLDSMVGQRMDL
                     LMTIVDEAHHVRNPKSRLHDAIQMLFLSSRWKMLLTATPVNLDNEDLFVLLSLIAPDR
                     WPDIHSFRATMSPTATIHSAIDAVCTKPIQADQLRNEIARLSNYVAMQDDPRLRDIRV
                     LAAEGEYLSSKSHRELVDLLREMLPLNDMLVRTRRKDLDMELAQRSPVILHVNLTEEE
                     WALYRAARSWSYRLQRLRDPDGGFDWASIMPERMASSCLQAYASHVLHKIEKVLDNPP
                     DEEEEDARIIDAWRNLPEHRELVRAAKSLGHRDTKYEALFGWLRKQETTDGFDGGVLL
                     FSQFHGTLEHLLKKLNDDGLRAELLTGKTPLARRDEIRERFARGEMDVLLSSEVGTEG
                     LDQQHCHRLVNYDLPWNPMKLEQRIGRLDRYGQRSPVIHIANMCVQGTIDAAILGRLL
                     FRIQIFETSLGMVDPMLGRAVRVLAQNEISRNAVREDTEPGFQFMDLDHYLEIENDED
                     VEEILQERNRWVTESALKEREVIGADPGVRRVRSAMEEHRVDVKPEDVRRQIERWMIT
                     NGGDHYEASDGVWMIRLSNECLEKLSSSRHGTTDWKELICRLSRRAGPQWLEITYSQA
                     IARERTDLEFVNPWHPLMRISLDESARVFGEDVIASEILSVGSADSLPTGTACVVAIE
                     WRVHGLNEHRIRRWLALDEKFNPLITLDHNPWMDTEEIPRVIMRDDSLIQHLEEARTR
                     LHGELLFHERNRLAPLLNELTINTNAAWKSRIEAEEVQIQKAEWNATLRDEIVDIRWL
                     RMKRGIINRLHEQLNERIEEIDRIRQSMQASIAIPIVVLIGE"
     gene            complement(3032..3496)
                     /locus_tag="HA345_03355"
     CDS             complement(3032..3496)
                     /locus_tag="HA345_03355"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013224.1,HMM:NF024804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HIH84428.1"
                     /translation="MLDDTDRAILAQLIEDGTRSNRTVAEAIGVSQGTVSNRVKRLEE
                     LGVILGYTARIDPEKVGWRITVVIGIRIEKGRLLEIQGRIAEDPRVISVYDVTGDYDS
                     MVIALAKDRGDLNDLTKTVLSIDGIERSHTHMVLNTVKDSKIEMPKNHKDGA"
     gene            complement(3572..4594)
                     /locus_tag="HA345_03360"
     CDS             complement(3572..4594)
                     /locus_tag="HA345_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84429.1"
                     /translation="MPMVQAAQLIEVFVPNGGTIQDIVDEELLEEVQSSEAILISWHS
                     DNEDPLNILAAEQRAVALNASTGDIRYDGTLLAGDIQSGQDIQVHTRWTETGDISIDA
                     QIRLNETIGDEVIIRWLILRPSISVDSHPLAPNDLNVVAYHAWTSTFNRSEGADEVWN
                     HVVQPTTLLEWGIEPGENVRVVTSLISMNDHLVHASGISHLDAHVVEKGAKSTATANL
                     IMGIGILSLTAVFIGEKKRQQSMPKIRPIVTGNGDNIQHRIHVQAGAAGIVIDGIEGG
                     RTWRMVARRNLPIRLEPKEETEIQIRKLRAIEHDDPCTIKMEVDGHDRWILDLRFPRK
                     VASEEE"
     gene            complement(4642..6276)
                     /locus_tag="HA345_03365"
     CDS             complement(4642..6276)
                     /locus_tag="HA345_03365"
                     /inference="COORDINATES: protein motif:HMM:NF013362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HIH84430.1"
                     /translation="MVDERIVVGDDQRPWRQQAEESLLLVAMEAWHGESDVWLEAALP
                     RLDETLRVNPLRRECDWVRQRIEEMGGRALGWVPNAYVMPWERGGAPADIKPLFNAFH
                     ETGRTTRQEAVSMLPPMMFDLNPEEIVLDMCASPGSKSTHLAEILAGRGGVIANDVSR
                     SRTNTLVANAQRASCSNLMIIQHDGRHVPRGTGQGYDAVLVDAPCTGSATTRKNPDVW
                     RKSQPSAGLELHKLQISLLNRAIDVVRPGGTVVYSTCSIDPVENEAVIARILEERDDV
                     VSIQFEPSRTPGLIYRPGMDEWVVFDDDMEIISDGSGAPPHDPKIREELGKCVRLLQQ
                     DTGQGGFFFAILQKNADAMMEIRPDARRIIPNSKRKGIHPSIVSEETLDIIQTDHDPI
                     LSDASIWKRGKRILWASQAMNKRVWDMDTNSRPDRIHLGKQWSPLNIIHVGVRGWEDR
                     GGRNIRLSSEAMHSIPLGTEGERIHDVTPEALIRILKQEEPAENEQGYDSGGHILRCE
                     FDGVEWRLPVWVGERITGMWKDTEALILLDRFKDVI"
     gene            6339..7403
                     /locus_tag="HA345_03370"
     CDS             6339..7403
                     /locus_tag="HA345_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84431.1"
                     /translation="MGIEDLLLVQVLILPLIWFGPAIGRRFTIEAERFERLLLLIPIA
                     LLGTAILLAVSGHRGEPSHVHATLWGVSDSIFTAAQYLAGGPEGGILICAFTGSVWIL
                     ICQGRRGSGPWIMMTAHLLPLIAVGTSSGAFTPVSSSFETSSFVPEPSFTPLMINSIQ
                     GLLIAELLIRTSSSMNCRRIRKSDANLGFTIALMTTLLTLRPDSVLELEPVVRAYHLV
                     VVLMMFSVSDMMGGSTESSRYSSGMTWPSFGITLLTLLGPGIAVFVGGAPNLSVLWAI
                     GTVSALGALGSQLPRIGMDLRNRSAHRGAIFGGFAGIALLVITSEPSLILLLGCLPLF
                     FVSQSWNYLDRHFGSKSSSP"
     gene            7489..7863
                     /locus_tag="HA345_03375"
     CDS             7489..7863
                     /locus_tag="HA345_03375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84432.1"
                     /translation="MEMQEQISRRSSRYAKDEGRLIRTNTNETVRKLRSLTDRARLYG
                     RAEGALVPVEALVTIETDHWVWQTVDRSTLSKLTHRLVLQMKDGRRRELFMTHNLDAA
                     VESASRIVEFHDGVVLVEALAP"
     gene            7917..8114
                     /locus_tag="HA345_03380"
     CDS             7917..8114
                     /locus_tag="HA345_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008086530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit Sec61beta"
                     /protein_id="HIH84433.1"
                     /translation="MVRMAKKKDNSGIQQAAGLIRYFDEESEDALQIPKSAVYAACFA
                     LSIAIYLANHGVWQWIWEKIG"
     gene            complement(8115..8522)
                     /locus_tag="HA345_03385"
     CDS             complement(8115..8522)
                     /locus_tag="HA345_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84434.1"
                     /translation="MDVLASLGHNPWNAAFGWAFKRHTNLSIPEHREEWSGLASSGKE
                     EMDTAIDLLEDRLRKLQAGSENVRKVHVEEARNDIDRARKALLERNLPSAMRAMARAE
                     KELILADPDTRSDIDKMEENDEEIPYIDLTGEE"
BASE COUNT         2003 a         2129 c         1930 g         2475 t
ORIGIN      
        1 cgcagagttc taatgaggtc tatggccatg aaagggtcta cagttgaggg tttgaagaca
       61 cacgtgaacg agttgaatcc tctaatcgat acagtcgatc cgccccccgg tcgatttttg
      121 tgattctcga tgttattccc cgataaggac aacgattgga atggctatgc ttgcttgcat
      181 agattgccta attctgtcta tctcttcgat acgttcgttc aattgctcat ggagccgatt
      241 gatgatgccc cgcttcatac gcaaccaccg tatatcgaca atttcgtcac ggagcgtagc
      301 attccattct gctttctgta tttgtacttc ttctgcttca attcttgatt tccacgccgc
      361 attggtattg atagtcagtt cattcagtaa gggggctaat cgatttcttt catggaatag
      421 taattcacca tggagtcgag ttcgagcttc ttctaagtgt tgaatcaagg aatcgtctcg
      481 cattattact cgaggtattt cctcggtatc catccatgga ttgtggtcga gagtaatgag
      541 cggattgaac ttttcatcta aagcaagcca tcgccgaatt cgatgttcgt tgagcccatg
      601 aactcgccac tcaattgcca caacacaagc agttccagtg ggaagagagt cggcagaccc
      661 tacactaaga atttcagatg caatcacatc ctctccgaac actcgggcag attcatcgag
      721 agaaatacgc atcagaggat gccaaggatt gacaaattca aggtcagtac gttctcgagc
      781 gatagcttga ctatacgtaa tctcaagcca ttgtggtcca gcacgtcgac tgagtcggca
      841 tatgagttcc ttccaatccg tcgttccgtg tctggacgaa ctcaatttct ccagacattc
      901 attggataac cgaatcatcc agacgccgtc agacgcttcg tagtgatccc ctccattcgt
      961 aatcatccaa cgttcgattt gccgtcggac atcttctggt ttgacatcta ctcgatgctc
     1021 ttccatcgca gaacgtacgc gtcgaacacc aggatccgct ccaatgacct ctcgctcttt
     1081 gagtgccgat tctgtaaccc atcgatttct ttcctgaagg atctcctcga cgtcctcgtc
     1141 attctcaatc tcaagataat ggtcaagatc catgaattgg aaacctggtt ctgtatcctc
     1201 tctgacggca tttcgtgaga tctcgttctg agcaagaaca cggacggctc gacctagcat
     1261 cgggtcaacc attccaagag atgtttcaaa gatctggata cggaatagca atcgacctag
     1321 gattgcagca tcgattgtac cttgaacaca catgtttgcg atgtgtatta caggactcct
     1381 ctgtccatag cgatccaacc tcccaattcg ctgctctagc ttcattggat tccatggaag
     1441 gtcgtagttg acgagtcgat ggcagtgttg ttgatcgagc ccttctgttc cgacttcgct
     1501 gcttaggagt acatccattt cgccacgagc gaacctctct cggatttcat ctcgtcttgc
     1561 aagtggcgtt tttccagtta gtaactctgc tctgagcccg tcatcgttca attttttcag
     1621 aaggtgttca agggtaccat ggaattggga gaataggagg acccctccat caaaaccatc
     1681 tgttgtttct tgtttcctta gccatccgaa tagcgcctca tatttcgtat ctcgatgccc
     1741 gagagatttc gctgcgcgta caagttctcg atgttccggc aagtttctcc atgcatcaat
     1801 aattcgagcg tcttcttcct cttcatcggg aggattatcc aatactttct cgattttatg
     1861 gagcacatgg gatgcatagg cttgcagaca ggatgatgcc attcgttctg gcataatcga
     1921 tgcccaatca aagcctccat cgggatctct tagacgctgg agccgatatg accaggatcg
     1981 tgcggccctg tagagcgccc attcctcttc ggttagattg acgtgaagta tcactggaga
     2041 tcgctgagca agttccatgt cgaggtcttt ccgccgcgtt cgaacgagca tgtcgttcag
     2101 aggcaacatc tctctcaata ggtcgacaag ttcgcgatgt gattttgatg aaagatactc
     2161 accttcagca gctagaactc gaatgtctct caatcgagga tcatcttgca ttgcgacgta
     2221 attacttaat cgagcgatct catttctgag ttgatccgct tgaattggtt ttgtacatac
     2281 tgcatcgata gcactgtgta ttgtggcagt aggagacata gtggcacgaa aggaatggat
     2341 atcaggccat cgatctggag cgatgagaga gagtaagaca aagaggtcct cattatcaag
     2401 attgactggt gttgccgtga gaagcatctt ccagcgcgat gagaggaaga gcatttggat
     2461 cgcatcatga agccttgatt tcggattccg aacatggtgg gcttcatcga caatggtcat
     2521 gagtaaatcc atcctttgac ctaccatcga atcaagtgtt tcagctcgcc gcagaacacc
     2581 gtgactgacg attacaacat tgtttgagcc gttctgtaga gcattgagtt cttcgaggaa
     2641 ggaggcacag gttgcgggcg tctttgcttc aagatcgact cgatgtgcga gttcattctt
     2701 ccattttgat cttaggcttc caggacaagc aattagaata cctcccgttt cacctctagc
     2761 atggagttct cgaatcgaga tcatcgcaga tatggtcttt ccaaggccca cttcatcagc
     2821 gacgagaata cctttccatg gtcctgcaaa catacgggca actggtagat gttggtgagg
     2881 ttgatcttcc catcgaccga aatgaagggt catgttctga tccgaagcgg gttgcttaat
     2941 cttaagatcg gattcgatag cggcccaagt cctctgtcca gtagatggat tttgcaatgt
     3001 catgagacca cctcatgggg ccgaggccat atcaagcgcc atctttgtga ttcttcggca
     3061 tctctatctt ggagtccttt actgtgttca ggaccatatg tgtgtgagaa cgttcgatac
     3121 catcgatgga gaggacggtt tttgtcaaat cgttgaggtc ccctctgtct ttggcgagag
     3181 caattaccat tgagtcgtaa tctcctgtga catcgtatac tgagataaca cgcgggtctt
     3241 ctgcaattct cccttggatt tcgagtaatc gtcccttctc tattcggatg cctatcacta
     3301 ctgtaattct ccatccaacc ttctctggat ctatgcgtgc agtatatccg aggatgacgc
     3361 ctagttcttc taatcgcttt actcgattgc tgacagttcc ttgtgagact ccaatcgctt
     3421 ctgcaacggt tcgattggaa cgggtcccat cctcgatcaa ttgggcgagg attgcacggt
     3481 cggtgtcgtc gagcattcca catcgccttc ggggctacgc agttcggtcc gccgctcttg
     3541 aagtttccag cgaataacct agttccaaca gttactcttc ctcactcgca acttttctcg
     3601 ggaaccttag atctagtatc caccggtcat gcccgtcgac ttccatcttg attgtgcagg
     3661 ggtcatcatg ttctattgcc cgtaattttc gaatttgaat ttccgtttcc tcttttggct
     3721 ccaatcttat tggtagattc cgtcgtgcaa ccattctcca tgtccgtcct ccttcgatac
     3781 catcaattac gatacctgct gcaccggctt gaacatggat tcggtgttgg atattgtcgc
     3841 cgttaccagt cacgattggc cgaattttag gcattgactg ttgccgtttt ttttcaccga
     3901 taaatactgc tgtgagggaa aggattccaa tacccataat gaggtttgca gttgcagtac
     3961 tcttcgcacc tttctcgact acatgtgcat caagatgact aattccagaa gcatggacta
     4021 gatgatcatt catcgaaatc aggctggtta caacccggac attttctcct ggttcgatac
     4081 cccattccaa caaagtcgtt ggttgcacta catggttcca tacctcatct gccccttcgc
     4141 tacggttgaa ggttgaagtc catgcatggt aggcgaccac attcaagtca ttaggagcta
     4201 gagggtggct atcaacagag attgatggcc gtagaatcaa ccatcggatg attacttcgt
     4261 ctccaattgt ctcgttgagt cgtatctgag cgtcgattga aatgtctcct gtctctgtcc
     4321 atcgggtatg gacttggata tcctgtcccg attgaatatc tcctgctagg agcgttccat
     4381 cataccgaat atctcctgtt gaggcattta gtgcaacggc tctctgttct gcagcgagga
     4441 tgttcaatgg gtcctcatta tcggagtgcc atgagatgag gatagcttca cttgattgca
     4501 cttcctctag gagttcctca tctacgatat cctgaatggt tcctccattt ggaacgaaga
     4561 cctcaatcaa ttgggctgcc tgtaccattg gcatcaggag caccgccaag aatatactca
     4621 atacgcagaa tcgaattttc attagatcac atccttgaat cgatccaata agatgagtgc
     4681 ttctgtatcc ttccacattc cagtgatacg ctcacccacc catacaggta gtctccactc
     4741 tactccatca aactcgcatc ttaggatgtg cccacccgaa tcataacctt gctcattttc
     4801 agcgggctcc tcctgtttga gaatccgtat tagggcctct ggagtaacat cgtgaattct
     4861 ctctccctcc gttccgagtg ggatactatg catcgcttca gaggacagac gaatgttcct
     4921 acctccgcga tcttcccaac ctctgacccc tacatgtatg atattcagcg gcgaccattg
     4981 ttttcctaga tgtattcgat ccggtcgtga atttgtatcc atatcccata cacgcttatt
     5041 catcgcttga ctcgcccaga ggatgcgttt ccctctcttc cagattgaag catctgagag
     5101 tattgggtca tgatctgttt ggattatatc tagggtttct tcgcttacta tagaggggtg
     5161 tatacccttt cgtttggagt ttggaataat tcgacgagca tctggtctaa tctccatcat
     5221 cgcatctgca ttcttctgta aaattgcgaa gaagaatcca ccttgccctg tatcttgttg
     5281 aagtaatcga acacatttgc caagttcttc tcgaattttg ggatcatgtg gaggtgcacc
     5341 agatccatct gaaataatct ccatatcgtc atcaaatacg acccattcat ccatgccggg
     5401 gcgataaatg aggcccggtg tacgggatgg ttcgaattgg atagacacga catcatctct
     5461 ttcttcgaga atccgtgcaa tgacggcttc attttctact ggatcaattg aacaggtaga
     5521 gtagaccaca gtgccaccgg gtcgaacaac atcaattgct cgattcagta gagaaatctg
     5581 taatttgtgt aattccagtc ctgcagatgg ttgcgatttt ctccaaacat cgggattctt
     5641 tcgcgtggtt gccgatccag tacagggtgc atcgacgagt acagcatcgt atccctgacc
     5701 agtacctctg ggaacatgcc gaccatcgtg ttgaattatc attagattgg agcatgatgc
     5761 tcgttgagca tttgcaacca atgtatttgt gcgcgaacga gaaacatcgt tggcaatcac
     5821 ccctcccctt ccagcgagta tctcggcgag atgcgtactc tttgatccag gtgatgcgca
     5881 catgtcaaga acgatttctt caggatttag atcaaacatc attggtggaa gcatggatac
     5941 agcttcctgt ctagtggtac gtccagtttc atggaacgca ttgaacaggg gcttgatatc
     6001 tgcaggagct ccccctcgct cccatggcat aacataggca ttaggaaccc aaccgagggc
     6061 cctccctccc atttcttcga tacgttgtcg aacccagtcg cattccctgc gaagtggatt
     6121 tacacgtaag gtttcatcca accgaggaag tgcagcttca agccatacat cagattcccc
     6181 gtgccatgcc tccatagcaa caagcagaag gctctcctcg gcttgttgcc tccacggcct
     6241 ttggtcgtct cccacgacta tccgttcatc caccatcgaa tgattgtagc gacagacttc
     6301 cgcacggttc aatgccttgt gtgtaaagag ccgcattgat gggcatcgaa gacctgcttc
     6361 ttgtccaggt cctgatttta ccattgattt ggtttgggcc agctattgga agacgtttta
     6421 ccatcgaagc agaacgtttc gaacgtcttc ttctcttgat tcctatcgct ttactgggta
     6481 ctgcgattct tcttgccgtg agtggccatc gaggcgaacc atctcatgtt catgcaaccc
     6541 tctggggagt ttctgattcc atctttactg cagcccagta tcttgcaggg gggcctgagg
     6601 gaggcatact gatctgcgca tttaccggat cagtatggat tctgatttgc caaggaagac
     6661 gtggatcagg gccttggatc atgatgacgg ctcatcttct ccctctaatc gcagtgggta
     6721 catcatccgg ggcttttact ccagtatcat catcgttcga aacatcctca tttgtacccg
     6781 aaccatcgtt caccccattg atgattaatt caatccaagg actcctgatt gccgaacttc
     6841 tgatccgaac atcatcatcg atgaattgtc gaagaatacg taaatctgat gcaaatctag
     6901 gatttactat cgccctcatg actactttac tgacccttag accggattca gtattggaac
     6961 ttgagccggt ggtacgagcg taccatctgg ttgttgttct catgatgttc tctgtttcgg
     7021 acatgatggg gggatcaact gaatccagcc ggtattctag tggaatgacc tggccatctt
     7081 ttggcattac actactaact ctgcttggac cgggaatagc tgtattcgta gggggtgcac
     7141 ctaatctttc agtcctatgg gcaattggta cagtgtctgc acttggagct ctaggctcgc
     7201 aattacctcg catcggtatg gatctcagga ataggtcagc acatcgtgga gccatattcg
     7261 gtggatttgc cgggattgct ctcttggtaa tcacatctga acctagccta atcctcctat
     7321 tggggtgcct acctctcttc ttcgtatctc aatcttggaa ttatcttgat cgacactttg
     7381 gctctaaatc atcatcccct taaacggcgt atcaatagtt aatttgcaat catgattaaa
     7441 tatctatttc caagattgga tgcatcgacc tgcaaaggtc gggatgggat ggaaatgcag
     7501 gaacagatta gccgaaggtc atcgagatac gctaaggacg agggtcgatt gattcgtacg
     7561 aacacgaacg aaacagtacg taaactacgt tccttgaccg atcgggcacg cctctatggg
     7621 cgtgcagaag gtgcattggt acctgttgaa gctcttgtca ccattgagac cgaccactgg
     7681 gtttggcaaa cagttgaccg atcaacgctt tccaaactaa cccatcgttt ggtgttacag
     7741 atgaaggatg gtcgtcgccg tgaactattc atgactcata atctcgatgc agcggtagaa
     7801 tccgcttcac gtatcgtaga attccacgac ggcgtcgttc ttgtcgaagc tttagcaccc
     7861 tgattacggc gaatccgtgt gcgtcacggt caaataggcc ccctcggtcg ggaagaatgg
     7921 ttcgcatggc gaagaagaag gataacagcg gcatccagca agctgcaggg ctcattcggt
     7981 acttcgatga ggagtctgaa gatgcccttc aaattccgaa gagtgcggtc tatgcagctt
     8041 gttttgccct atctatcgcc atttatcttg caaaccacgg cgtctggcag tggatttggg
     8101 aaaaaattgg ttgattattc ctcaccagtc agatcgatat agggaatttc ctcatcattc
     8161 tcttccattt tatcaatatc cgatctagta tcagggtctg cgaggatgag ttctttctca
     8221 gcacgagcca ttgcgcgcat cgcggaaggt aggtttcgtt cgagaagtgc ttttcttgct
     8281 cgatcgatgt catttctggc ttcttcgaca tggacctttc taacattctc acttccagct
     8341 tgcagttttc gtaatctatc ctcaagtaga tcgattgcag tatccatttc ctctttacct
     8401 gaagacgcta atcctgacca ttcttctcga tgttcaggga ttgataggtt cgtatgccgt
     8461 ttgaaagccc aaccaaatgc agcattccat ggattatggc caaggctagc taagacatcc
     8521 atcacgagcc gaccgac
//
LOCUS       DUKB01000098            9674 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_145754, whole genome shotgun sequence.
ACCESSION   DUKB01000098 DUKB01000000
VERSION     DUKB01000098.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9674)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9674)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9674
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_145754"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..4263
                     /locus_tag="HA345_03390"
     CDS             <1..4263
                     /locus_tag="HA345_03390"
                     /inference="COORDINATES: protein
                     motif:HMM:NF019311.1,HMM:NF024777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84435.1"
                     /translation="IQYGAWGSNDGSWEDNQLPDSGLDAPDGSTSSGIRSWVASTPAI
                     SVGESSDWYWDDSVKKNGNGAASLSISSAPCTATNGEITSGLLAEYFDNQGLSYNSSF
                     MPNLTNRAPNHFRSEANIDHTQVSTHWTGLDSRFADYFSVRHTGVLTIPEDGNWTIYS
                     NADDGVMIWIDDVLVVNNSGVHGMREVGVTVNLTEGEHRFRAEFFEHGGWAGHIVSWE
                     GPNLTKQVIPPSVFSRAMSAPVRSDILVHHWDFEAGNGTVVGDLVGDANLSMSGSPTW
                     QSCLLGNCIHLDGVDDELRVDVDDRLGNFTISLWAKANHTGQPGYASVVAVNDVGGDF
                     DSFQIMTSGSTPGIWQLYHNSRYDFGTVSASDWVHFVVAKDGNQLMQYMDGTLVNNIT
                     LPSGAIDEIDLYKFGVNRAGNTHWAGQIDEVQVWTEALNESDIILVNGEVALDCPSFT
                     TVGQGLSRISTNLTIDLEQAGHAWILSGHGQSSGEINADWMLNIEAYDGNGSLLSVNS
                     TNPTTMTPSWVQQTIRFRPHENATTLQISYEAEILNISREGILHFDTTNLRIIRPHMG
                     WIPGSIAETAVSTGGRSFNWDTGYGQSLIADLLEDGVSGVKGYVYEPYLTAVSRPDLM
                     TAYYASGYNLGEAYTASNGHLSWMGVVVGDPKMAPFSDQLHDVEVRNVSIPVRASANE
                     IFEIHVDVANLGASSASGWIEVRERIGNYLLTNQSITLPAGDEQGSVATLLIPVTTST
                     TGYVDFQIRYIADDGPILNRSQFVQSRILSERVVDNNFQTLNTQINGPPVITDIACSS
                     NVVPRGATVACWVDATDDFGMATAQMTIIGPEGSVLISMNALSSGSERWTAFFDVPGN
                     ASLDFYDVQFDITDIDGVNATSNLIAALEFIDSPSIWHGIHIQGADENDWNGDTNLPS
                     STPEGMIRGREAIIRACVEDVDHDPIAEAPTFSFESGVLGLIVALPKDSSSNFHCYAS
                     TLLLPLDQPLIPFLGRLIDSEGNMQSTRSIRVENEAPTVSLTFERKGVSEGFALGVGN
                     ESVRISVLDLDAVNGMANGQLTLQWPEQGEMKIPFTAMTDGTEVIVSIPMPGPGLTAG
                     TLLLDVSVIDRDAGQATQGISLPVETRPPSISEINICRGGEIFPLVNDSILNRGEVNH
                     MVVYLDVHRKVLQTTASIRQAGWSETLDFSLETPSTCEVLDGIVYTVNVPSDFTEGEA
                     SIVLIAVDQDGLASGWTESIEIVFPSPVIHDIHWPVGAEVGVPSTIDFNVTDLDDLSS
                     VLCDIDIVQGNLSILSVEASPGQEGSILVEWKPGRPMENVSASIVCRDELGRVDESNI
                     TGLNVTGEVELPIENPSEETEEQADGIGFMLPGVVLAVLILLLLITQVLRSARFTSMK
                     DESESPWIVAESDALLMHLDTSSITDDESAISTIESDVVNED"
     gene            4314..4547
                     /locus_tag="HA345_03395"
     CDS             4314..4547
                     /locus_tag="HA345_03395"
                     /inference="COORDINATES: protein motif:HMM:NF013224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HIH84436.1"
                     /translation="MATGYVLVNVEPGMEFSVFESVKGLDEVADATLLFGDYDLIIKV
                     ISEDMSSIAAFVVEKVRQVEGVSNTKTLAGAEI"
     gene            4677..4943
                     /locus_tag="HA345_03400"
     CDS             4677..4943
                     /locus_tag="HA345_03400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_048133311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal protein MC1"
                     /protein_id="HIH84437.1"
                     /translation="MSEKKYFVLMENGKDTSTVYHNKQPRQAALKAANKGHKDIRLRE
                     RGTDKVHVFTGQRNQVPKPASAPAWLKGDTVWKANVSKVGIERL"
     gene            5141..5716
                     /locus_tag="HA345_03405"
     CDS             5141..5716
                     /locus_tag="HA345_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84438.1"
                     /translation="MSPFEFVTIFCSLILGLALTHIFRAVSDLYEIRDRVKTYWLNSL
                     WVVTVTMWSIQTWWGLWSLSIVMDTWTYAQYWFLVVNLSSIYFFTTLVLPKATDEGHI
                     DLESHYYSVQQAFFSLIAISLFTSSVINHTLFEKALTAPEVIMPTIVGCAAIGAALND
                     SKTYHKVIGVFMFLMYIVFQLTDVLLIEYTP"
     gene            complement(5724..6491)
                     /locus_tag="HA345_03410"
     CDS             complement(5724..6491)
                     /locus_tag="HA345_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017627537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HIH84439.1"
                     /translation="MSDEVTFRVFRGAPDEDGDPFGKMVDYTVELDEGMVVLDVIHRI
                     QAKDAPDLACRWNCKAGKCGSCSAEINGKPQLMCMTRMEDVFEEMTDESEPVLVKPMQ
                     AFPLVRDLVTDTSWAYRTDERITPINGPEEPDWVFKQGEADRIQEFRACIECMLCVNT
                     CHVLREHQKFDEFAGPRFFVRLANLEMHPLDIESRIPEIKEDFGLGYCNITRCCTEVC
                     PAGINITDNAIIPLKERVVTEYYDPLAMIAKKLGLRK"
     gene            complement(6494..8323)
                     /locus_tag="HA345_03415"
     CDS             complement(6494..8323)
                     /locus_tag="HA345_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013014779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HIH84440.1"
                     /translation="MEDYEIHQHDVVVIGAGGAGLRAAIEASATGASVAMICKSMLGK
                     AHTVMAEGGAAAALANKDHRDSWETHFRDTMKGGKYLGDWRMAQIHAQQAPDRIRELE
                     QWGAVFDRTPNGLTSQRNFGGHTYPRLAHIGDATGLELIRTLQQKGIHTGMEVFMEYT
                     VRRLFKTNGRISGCFAYNRTDGTLHLFKAKTIILATGGITRCWEVCSGSWEYTGEGHA
                     LAYWAGAEMGDMEFVQFHPTGMIWPPSVKGILVTEGVRGEGGMLTNAEGKRFMFDYVP
                     EMYRDEFADTEEEALAWVDEVISGKLATKRRPPELLTRDVVAKAINSERDAGRASEHG
                     GAYLDISWRDEEEVKKKLPGMYHQFMELAAVDITKQPMEVGPTAHYVMGGVKVDPYSQ
                     ESTVPGLYAAGEAATGLHGANRLGGNSLSDLIVFGKIAGEYAAAEALEIDSFADIDAA
                     EIKEVIEETLAPLSRGDGENPAKVVEDLRLMMQKKVGIIRTGGLLEEALKDLDELEMR
                     SSNTSAGGGRIYNPGWHQALEIGAMIDVSRMCALAALRREESRGGHTRDDFPTPDHKH
                     WGKINSVIIKKGDGSMVIDYVTYPPIPDDLKSLLDANDLHEEE"
     gene            complement(8324..9181)
                     /locus_tag="HA345_03420"
     CDS             complement(8324..9181)
                     /locus_tag="HA345_03420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84441.1"
                     /translation="MKKGFGQTDRTDPWWKGPTAMGAYLGIMLIYATWRGFMEADFWI
                     FSEFGYSADIGHGAGTMAIENTGSHVLSPLYSPLIIPGGDSIGSMVPLALAWMSPAMF
                     ILVFPAGFRGTCYYYRKAYYRAFFQQPTGCAVSKPWNEYSGETGLLVVQNLHRYFMYA
                     AVIYLPILAWDFWLSINFHDPVTHAHSFGVSIGSLLLFANVMMLSGYTFGCHAFRHVV
                     GGASNDWTSSSTARFKHRLWKWSTKLNEHHKDWALYSLFVVMFADFYIWMCTDPMFGI
                     SDVVLIGGF"
     gene            complement(9275..>9674)
                     /locus_tag="HA345_03425"
     CDS             complement(9275..>9674)
                     /locus_tag="HA345_03425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013704042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HIH84442.1"
                     /translation="MECFHEEIFGPVVTIVKAKDFDHALHLANASPYGLSSAIYTNDR
                     LEAYRFKTGIKAGMTGINNSTTGAEAHLPFGGVKGSGNGTRESGIWVIEAYSYWHAVN
                     DELSGKLQLAQMDVDEIEIEEAEVDYGSLA"
BASE COUNT         2326 a         2292 c         2416 g         2640 t
ORIGIN      
        1 atccaatatg gtgcatgggg gagtaacgat ggttcttggg aggataatca actaccagac
       61 agtggtttgg atgctccgga tggctctact agttcaggta tccgttcatg ggttgcatcc
      121 actccagcga tatcggtagg ggagtcgagc gattggtact gggacgattc cgttaagaaa
      181 aatggcaatg gtgcagcatc tctcagtatc tcatcggcac cttgcacggc gacaaatggg
      241 gagattacct caggcctctt agctgagtat ttcgacaatc agggattgtc ttacaactcc
      301 tccttcatgc cgaatctaac aaaccgtgcc ccgaaccatt tccgttctga ggctaacatc
      361 gatcatactc aggtgagcac acattggaca ggtcttgatt cacgatttgc cgactacttc
      421 tcggtacgtc acactggtgt gctgacaatc cctgaggatg ggaattggac aatttattct
      481 aatgctgatg acggtgttat gatttggatt gatgacgtcc tagtcgtcaa caattcaggt
      541 gtgcacggta tgcgagaagt aggtgtcacg gtcaacctta cggagggaga acatcgattc
      601 cgagccgagt tctttgagca tgggggatgg gccggtcaca tcgtttcatg ggaaggtccg
      661 aatctgacaa agcaggttat tcctccttca gtgttcagtc gcgcgatgag cgctcctgtt
      721 cgttcggaca tcctagtcca tcattgggat tttgaagcgg ggaacggaac agtcgtaggg
      781 gacttggttg gcgatgcgaa tctttccatg tcggggtccc caacatggca atcctgttta
      841 cttgggaact gtatccactt ggatggtgtc gatgatgaac tacgagtgga tgttgacgac
      901 cgcttaggta atttcaccat ctctctgtgg gctaaggcga accatacagg gcaaccgggg
      961 tatgcctctg ttgtagcagt gaatgatgtg ggcggtgatt tcgactcttt ccaaattatg
     1021 actagtggtt cgacgccagg tatctggcaa ttatatcata actctagata cgattttggc
     1081 acagtatctg caagtgactg ggttcacttt gtggtggcga aggatggtaa tcaactgatg
     1141 cagtacatgg atggaaccct cgtcaataat atcacattgc caagcggagc aatcgatgag
     1201 atagatcttt acaaattcgg tgtcaatcga gcaggaaata cgcattgggc tggacaaatc
     1261 gacgaggttc aggtgtggac cgaggctctg aatgaatctg atattattct ggtcaatggg
     1321 gaagtagccc tcgattgccc atctttcaca accgttggtc agggattaag tcgaatctca
     1381 actaacctta caattgattt ggaacaggct ggccatgcgt ggattctttc aggtcatggc
     1441 caatcttcag gggagattaa tgcagattgg atgttgaaca tagaagctta cgacggaaat
     1501 ggctctcttc tttcagtcaa ttcaaccaat ccaactacca tgactccctc ttgggttcaa
     1561 cagaccatac gattccgtcc acatgaaaac gcaaccacct tacagatttc ttatgaagcc
     1621 gagattctga atattagtcg tgaaggcatc ttacacttcg acacgacaaa tcttcgaatt
     1681 attcgtccgc atatgggctg gattccaggt tccatcgcgg agaccgcagt atcaactgga
     1741 ggacgttcct tcaattggga tacaggatac ggacagagcc tcattgccga tcttcttgag
     1801 gatggtgtgt ctggtgtcaa aggatatgtg tacgagcctt acctgacagc agtatctagg
     1861 ccagatttga tgactgctta ctatgcatca gggtacaatc ttggtgaggc ttacactgca
     1921 tctaacggtc atctgtcttg gatgggtgtg gttgtagggg atccgaagat ggcgccattt
     1981 tcggatcagt tacacgatgt agaagttcgg aatgtatcga tacctgttag agcttcagcg
     2041 aatgagattt ttgagataca tgtggacgtt gcaaatcttg gtgcatcatc tgcatctgga
     2101 tggattgaag ttagggaacg aattggtaat tatctgttga caaatcaatc gattactttg
     2161 cctgcaggag atgaacaggg ttctgtcgca acacttctca tcccggttac gacctcaact
     2221 acaggatatg tggattttca aatccgttat atcgcagatg atggcccaat cttgaatcga
     2281 tcccagtttg tgcagtcgag gattctctca gaaagggttg tagacaacaa ttttcaaacg
     2341 ctgaatacgc agattaacgg tcctccagta atcacagata tcgcttgttc gtcaaatgtg
     2401 gttccacgtg gtgctactgt tgcttgttgg gtggatgcga cggatgattt tggtatggca
     2461 acagctcaaa tgacaatcat agggccagag gggtcagttc tgatttcaat gaatgctcta
     2521 tcgagcggct ccgaacgatg gacagccttt ttcgatgttc caggtaacgc ctccctcgat
     2581 ttttacgatg tacaattcga tattactgac atcgatggcg tcaatgcgac ttcaaacctc
     2641 atcgctgctc tcgaattcat agattcccct tcgatttggc acgggattca cattcagggg
     2701 gctgatgaga atgattggaa cggagataca aatcttccat caagtacccc tgagggaatg
     2761 attcgtggga gagaagcaat cattcgtgct tgtgttgagg acgtggatca tgatcctatt
     2821 gctgaggctc caacgttctc ttttgaatcc ggcgtcttag gacttatcgt cgctcttcct
     2881 aaggattcgt catctaattt tcattgctat gcaagcacct tactgcttcc attagatcag
     2941 ccattaatcc ccttccttgg ccgtctaatt gattcagagg gtaatatgca gtcaactcga
     3001 tcgatccgcg ttgaaaacga ggcaccaacc gtttcgttaa cctttgagag gaagggcgta
     3061 tcagaaggtt ttgccttagg tgttggaaat gaatcggtga gaatttccgt gttggatttg
     3121 gatgctgtaa atggaatggc gaatggtcaa ttgacattgc aatggccaga gcagggtgag
     3181 atgaaaatcc cgttcacggc tatgactgat ggtactgagg tcatcgtctc gattccgatg
     3241 ccagggccag gcctgacagc aggtacactc ttactcgatg tatctgttat cgatcgtgat
     3301 gcaggtcaag ccactcaagg catttcttta cctgtagaga ctcgtccacc gtcaatttca
     3361 gagattaaca tctgtcgagg aggtgagata ttccctctag tgaatgactc gatcttgaat
     3421 cgaggggagg tcaatcacat ggtagtttat ctcgatgtcc accgtaaggt cttgcagacg
     3481 actgcatcaa ttcgtcaggc aggttggagt gagacgctcg atttctcact tgaaactcct
     3541 tctacctgtg aggtattaga tggcattgta tacactgtga atgtaccttc tgatttcaca
     3601 gagggcgagg cctcaatcgt attgattgct gtagatcagg atgggctggc ctcgggctgg
     3661 actgaatcga ttgagattgt tttcccctca cctgtaattc acgatatcca ttggccagta
     3721 ggagctgagg tgggcgtccc tagtacaata gacttcaatg taactgatct tgatgatttg
     3781 tccagtgttc tgtgcgatat cgatatcgtt caagggaatc ttagtattct atctgtagag
     3841 gcttcacctg gtcaggaagg gagcattctt gtcgaatgga aaccgggccg gccgatggag
     3901 aacgtcagtg caagtattgt gtgccgagat gagcttggtc gtgttgacga atccaatatc
     3961 acgggattga atgttacagg ggaggtggaa ctacccatag aaaatccatc cgaagaaact
     4021 gaagaacagg cggatggaat tgggttcatg ttacctggtg tcgtactcgc agttctgata
     4081 ctgttgttgt tgattaccca agtattgcgc agcgcacgtt ttacttcgat gaaggatgaa
     4141 tccgaatctc cttggattgt tgcggaatcc gatgctctac tgatgcatct cgatacctca
     4201 tctattactg atgatgaatc cgctatctcg acaattgaga gtgatgttgt gaatgaggat
     4261 tgagtcgatc actatagcaa aggcttgatt ggctaatgcc tttatcgctc tctatggcaa
     4321 ctggatacgt gcttgtgaat gtcgaaccgg ggatggagtt ctcagtattt gaatcggtta
     4381 aaggactgga tgaagttgca gatgcgactc ttcttttcgg cgactatgat ctcatcatca
     4441 aggtaatttc tgaagacatg tcttctattg ccgcatttgt cgttgagaag gtacgtcaag
     4501 tcgaaggagt ttcaaacacg aaaacacttg ctggcgccga gatttgagca catcgtcgga
     4561 ctgcaaggaa ccccgcggaa tccatgaaaa accgttgatt ttggagacgt attgcgtttc
     4621 tatggttaaa gtttatacgc gagaaaccaa gaaggtttgt tcacaggtga agcctgatga
     4681 gtgaaaagaa gtacttcgta ctaatggaaa acgggaagga cacctccacg gtgtaccaca
     4741 acaagcagcc ccgccaggcg gccctaaagg ccgccaacaa gggacacaag gacatccgtc
     4801 tgcgcgagcg cggcacggac aaggtccacg tgttcactgg gcagcgcaac caggtgccaa
     4861 agcctgctag cgcacctgcg tggctgaagg gtgacacggt ctggaaggcc aacgtcagca
     4921 aggtcggcat cgagcgcctt tgagcagctc tgcagacccc ctcttggaaa taattcccat
     4981 gaactgccct tagggcccag aacatccccc gccttagacc gtcggcgccc ccctcggtct
     5041 taggcgaacc cctccttctc tgaattatcc atttaggtta ctgggtagag gttattcttg
     5101 atagagtgtc ttcaggtttt tattcctgat agcaatgcag atgtccccct ttgaattcgt
     5161 gactattttc tgttcgttga ttctcggttt agccctcacg catatctttc gtgcagtatc
     5221 tgacctgtac gagattcgtg atcgtgtcaa gacgtattgg ctcaattcac tctgggtggt
     5281 tacagttact atgtggtcga tacaaacgtg gtggggactc tggtcgttgt ccatcgtcat
     5341 ggatacctgg acctatgcac agtattggtt cctcgtagtg aatttatcat cgatttattt
     5401 cttcacgact cttgttcttc caaaggcgac tgatgagggc cacatcgatt tagaaagcca
     5461 ctactattcg gtacaacagg catttttctc tctcattgcc atctctctct ttacatcgag
     5521 cgtaatcaat cacaccttgt ttgagaaggc attgactgcg cccgaagtga ttatgccgac
     5581 tattgttggg tgtgcagcca tcggggcagc tctgaacgat tccaagactt atcacaaggt
     5641 gattggggtt ttcatgttcc tgatgtacat cgtcttccaa ctaacggatg tccttctgat
     5701 cgaatacacg ccttgagtcc atttcacttg cgtaagccga gctttttggc aatcattgca
     5761 agcggatcat agtattctgt gactacacgt tctttcagcg ggataattgc attgtctgtg
     5821 atattgattc ccgcaggaca gacctcggtg caacagcgtg tgatgttgca gtatccaagt
     5881 ccgaagtcct ccttgatttc tggaatccga ctctcgatat ccagcgggtg catctctaag
     5941 ttggcaagac ggacgaagaa gcgtggccca gcgaattcat cgaatttctg atgttctcga
     6001 agcacgtggc aggtattgac acatagcatg cattctatgc aggcacggaa ctcctgaatt
     6061 cgatctgctt ccccctgttt gaagacccaa tctggctcct ctggcccatt gataggagta
     6121 atgcgttcat cggtccggta ggcccaagat gtgtctgtaa cgaggtcacg gacgaggggg
     6181 aaagcctgca tcggtttgac taggacaggc tcggattcat cggtcatctc ctcaaagaca
     6241 tcctccattc gtgtcatgca cattagttgt ggtttaccgt taatctctgc gctacatgag
     6301 ccgcatttgc ctgctttgca gttccatcgg caggcgaggt ccggagcatc ctttgcctga
     6361 atgcggtgaa tgacgtcaag aacgaccatt ccttcatcga gttcaacggt atagtcaacc
     6421 atcttaccga aaggatctcc atcttcgtcg ggcgctcctc gaaacaccct gaaggtcact
     6481 tcgtcggaca tacttactcc tcctcgtgta gatcatttgc atctagtaac gacttgaggt
     6541 cgtcaggaat aggggggtag gtcacgtagt cgattaccat ggatccgtca cccttcttga
     6601 tgatgacact gttgatttta ccccagtgtt tgtgatcagg ggtggggaag tcatcgcgag
     6661 tatgccctcc acgactctct tcacgacgaa gggcagcaag agcgcacatt ctgctaacat
     6721 caatcattgc tccaatttca agtgcttgat gccaaccagg attgtagatg cgaccgccgc
     6781 ctgctgaggt attgcttgaa cgcatctcaa gttcatcaag atccttgagt gcctcttcga
     6841 gaaggcctcc agtcctgatt attccaactt ttttctgcat cattaaacgg aggtcttcaa
     6901 ctactttcgc tggattttct ccatccccac gggaaagggg tgcaagcgtc tcttcgatta
     6961 cttctttgat ttcagcagca tcgatatcag cgaaactgtc aatctcaagt gcttctgctg
     7021 ctgcgtattc tccggctatt tttccgaata caattagatc ggagagagaa ttaccgccta
     7081 atcggtttgc tccgtgaagt cctgtagctg cttctcctgc tgcatagagg ccgggaacag
     7141 tggactcttg gctgtagggg tcgaccttta cgccgcccat aacgtagtgt gcggtggggc
     7201 caacttccat tggttgcttc gtgatgtcaa cggcagcgag ctccatgaac tgatggtaca
     7261 tgcctgggag tttcttcttg acttcctcct catcacgcca tgagatgtcg aggtaagctc
     7321 ctccatgttc tgaggctcgc cctgcatctc tttcgctatt gattgccttt gcgacaacgt
     7381 cacgcgtcag aagttcaggt gggcgacgct tagtcgcaag ttttccggat atcacctcat
     7441 caacccaagc cagcgcttcc tcttcagtgt cagcgaattc atcccggtac atctctggta
     7501 cataatcgaa catgaatcgt ttgccttcgg cgttggtgag catcccgcct tctccgcgaa
     7561 cgccctctgt gacgagaatt cctttgaccg agggaggcca tatcatccca gttggatgga
     7621 attggacgaa ttccatgtca cccatttctg caccagccca ataagcgagt gcatgtccct
     7681 ctccagtgta ttcccaagaa cccgagcaga cttcccaaca gcgggtaatt ccgccagttg
     7741 caaggatgat tgttttggct ttgaacaagt gcagcgttcc gtcagtcctg ttgtaggcaa
     7801 agcatccaga gattctacca ttggtcttga acaagcgacg gacggtgtat tccatgaata
     7861 cctccatgcc tgtatggatg cccttttgtt gcagagtacg aatcaattcg agtccagtcg
     7921 catcaccaat atgggcgagt cgtggatagg tatggcctcc aaagttacgt tgactcgtca
     7981 atccattggg ggtacgatcg aagacagccc cccactgctc aagctctcgg attctatctg
     8041 gagcctgctg tgcgtggatt tgagccatgc gccagtcgcc cagatatttt ccccccttca
     8101 tggtatcgcg gaagtgcgtt tcccaggaat ctctgtggtc cttatttgct agagcagctg
     8161 cggctccacc ctcagccatg actgtgtgag ctttacccag catggattta cagatcatgg
     8221 cgacactcgc accagtggca cttgcctcga ttgctgctcg taggcctgct ccaccagctc
     8281 cgattacgac tacatcgtgc tgatggatct cgtaatcttc cattcaaaat cctccgatga
     8341 gaacaacatc tgaaattccg aacatcggat cagtgcacat ccagatgtag aaatcagcaa
     8401 acatgacgac aaataggctg tagagggccc aatctttgtg atgctcgttg agtttcgtgc
     8461 tccatttcca aagtcgatgc ttgaatcggg cagtactgct tgaggtccaa tcgttggagg
     8521 caccgcctac cacatgtctg aacgcatgac aaccaaaggt gtatcccgac aacatcatga
     8581 cattggcaaa taggagaaga gaaccaattg agacaccgaa actatgtgca tgtgtaactg
     8641 ggtcgtggaa gttgattgag agccagaaat cccatgcgag gatagggagg tagattactg
     8701 ccgcatacat gaagtaacga tgcagattct gaacaacgag aagtccagtt tcaccagagt
     8761 actcgttcca tggtttggag acagcacagc cagtaggctg ctgaaagaat gcgcggtagt
     8821 acgcctttcg atagtagtaa catgttccgc ggaaacctgc agggaatact aggatgaaca
     8881 tggcaggtga catccatgcc aatgcgaggg gcaccattga tccaatggaa tctccaccag
     8941 gaataatcaa tggagagtat agtggactta gaacatggct tcctgtattc tcgattgcca
     9001 ttgtaccggc gccatggcca atatctgctg agtatccgaa ttccgagaat atccagaaat
     9061 cagcctccat gaacccgcgc catgtggcgt atatgagcat gattccgagg taggcgccca
     9121 tcgcagtagg gcctttccac caagggtcgg ttcgatcggt ctgtccgaac cccttcttca
     9181 ttgggagttt gacagattcg cccacatcat ccaactctgt tcaaatggga cggttgatgg
     9241 gacataagta attgcataca gccttactat attctcaagc cagtgaaccg tagtctactt
     9301 cggcttcctc aatctcaatc tcatcaacat ccatttgtgc gagttgtaac ttcccactca
     9361 attcatcgtt tactgcgtgc cagtaggagt aagcctcaat cacccaaatc ccagattcac
     9421 gtgttccatt acctgacccc ttgacgccac cgaatgggag gtgcgcctcc gcgcccgtgg
     9481 tggagttgtt gatacctgtc attcctgcct taattccagt tttgaagcga taggcttcga
     9541 ggcgatcgtt ggtatagatt gccgatgata ggccgtaggg cgaagcattc gcaagatgaa
     9601 gggcgtggtc gaagtctttc gctttcacga ttgtgacaac gggcccgaat atctcctcat
     9661 ggaagcattc cata
//
LOCUS       DUKB01000099           10688 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_196575, whole genome shotgun sequence.
ACCESSION   DUKB01000099 DUKB01000000
VERSION     DUKB01000099.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10688)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10688)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10688
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_196575"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            13..594
                     /locus_tag="HA345_03430"
     CDS             13..594
                     /locus_tag="HA345_03430"
                     /inference="COORDINATES: protein motif:HMM:NF013700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HIH84443.1"
                     /translation="MVNWRSESYSPVVNFPEAPVVLDLSSSTPYGSPDSIWTVGRYDE
                     IRGIYTTDLFSDGRTLHVGIDLGGPVGTPVHAFMDGVIHAVGYNAEDGDYGHTVIMYH
                     RIDGTDVWALFGHLDEASTIGVEKGTKIRAGEVIGRFGDESENGGWPPHVHVQLSLIE
                     PENHDLPGVVHPDERDWALSVFPDPRHVLGSLY"
     gene            complement(591..1691)
                     /locus_tag="HA345_03435"
     CDS             complement(591..1691)
                     /locus_tag="HA345_03435"
                     /inference="COORDINATES: protein motif:HMM:NF021916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84444.1"
                     /translation="MGVTTQSPSGWSVIRLNEDAQITEQIENLDPSDMVGWTRRFPGA
                     LKTAITRDIGIDTDQDWSGVLFLGVGGSGAGGMMLCNMVDQAGGLPFVSWKDYGLPSW
                     WGPEWLVIATSYSGNTEETLTGVREALEEGGTVIGISSGGTLQDILENQDGAMWIDVP
                     AGQPPRSAVGHIFGTQVNLCWSLGLLPRMEEEALDAMLARMEGLRDRLDLIGGDGSMM
                     GIARELQGQRLQIMSAPSLGAMGYRCRTQLNENSGLLATASILPELHHNEIVAWGDEE
                     MQKDVQILLFVWNGMHDRVGLRVEWTLDTLQDVPIHVLDCSGDSLLEAILFGAHLSDW
                     LSIACALLRGKDPTGIGPINNLKSHLSNITMD"
     gene            complement(1652..2710)
                     /locus_tag="HA345_03440"
     CDS             complement(1652..2710)
                     /locus_tag="HA345_03440"
                     /inference="COORDINATES: protein motif:HMM:NF016842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84445.1"
                     /translation="MDQSGAFCIVCASPPPLTTERLCEDCFRKRNHLSDLPERIQQTR
                     CPSCLKIQIEGRFSRVSEEDLMQQRVVEALRVHPEATDIEMDLHAEPIDDRATRLKLE
                     LKGIIQGFTFESLHETLLQTSNGVCLPCTRKAGAYFEGTMQLRSAGRRLDEGEIANLR
                     ASLDTMLEEIGDEPMFFITNEGPVKGGWDMQVGSKAMARMWAKRLVASHGGRIKETSS
                     VVGHKDGVDVTRLTVLYRKPAYALGDVIGFDGRKWRVDTWTKDGPILKALDNLERTGT
                     TWRSLEKCTVLSRMQEHHIVEILRKDDSAFDFMDPHDYSMRTIGNPYDMDADAISVRI
                     CLIDGEWESLPRVRVDGV"
     gene            complement(2759..2935)
                     /locus_tag="HA345_03445"
     CDS             complement(2759..2935)
                     /locus_tag="HA345_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84446.1"
                     /translation="MDDMLALALAYGLLIGLLLGHSILTALRMKDLDARLDAAVESME
                     SASKVREGSDLSEE"
     gene            complement(2938..3642)
                     /gene="ccsA"
                     /locus_tag="HA345_03450"
     CDS             complement(2938..3642)
                     /gene="ccsA"
                     /locus_tag="HA345_03450"
                     /inference="COORDINATES: protein motif:HMM:NF013725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HIH84447.1"
                     /translation="MSAADRAIPWLLGIGSLGLLVTVYLALVEAPAMGENAGFTAPEA
                     YRILFIHVPFAWVSFTGFALLFGGSLAWYLRRSEAGWRLGVTGARLGLLYSLGVLISG
                     PIWGAAEWGTPWDFSDVRLNTFAVLAGVALFVALGERNSEDTAEIRDSLSAVGIFGFG
                     LVPLTYMATRWWQERHPGPVLGGGEDSGIDPFILQIWLIGAASMQILFIGQTLMTMRL
                     LRMENEVEKMLTMLEA"
     gene            complement(3692..5041)
                     /locus_tag="HA345_03455"
     CDS             complement(3692..5041)
                     /locus_tag="HA345_03455"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HIH84448.1"
                     /translation="MDDAPLLALERATVLRGRLTILEEFDFKLHPGERCTIIGPNGSG
                     KSTLLRSLAGLLPLRSGALFHGNRGIRDQDGRHAFRTEQIGWCPQSAGTTLAATPLEH
                     LQTTLQMHGAKMEDEALIAALNHWGLDHRRHDRIAWLSGGLRRRLEVASAFIVAETST
                     SPVPVLLDEPSEGLDEPGVEILLNKIQDTVNSGHSVIVATHDPRLISASEEVERLDAN
                     GMEILRSERNHNELTARIYKASNAYSGGMFRWNLRLDLREFSTPAARWLPGLIAFGIL
                     IGAGLEQADIPFLGKAALALSPAMISAMIRPSLMDRLSDREMGSIWATSLQGSLPFHV
                     TFASMSVVPVILAIIGVIMFLPTPDSPDAWIQTILIIGLLVDIPCAAGLIHYRFGQGR
                     RPALMILLLTPFAWILLTMCSVLDAIYLEAYAEAWTGIAVSYASVVGLFLLAWALSE"
     gene            5126..6169
                     /locus_tag="HA345_03460"
     CDS             5126..6169
                     /locus_tag="HA345_03460"
                     /inference="COORDINATES: protein motif:HMM:NF013827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HIH84449.1"
                     /translation="MENHMIPVTFSQLSWSDSIWLLLFFTAAVCPYIAARVNRTPASL
                     ATVISLMLVAVLQFLNALIGSMTGSDFDPVYFGALIPAWVLEPSHVHRLFFAGWLHGG
                     AMHVLGNILVVALIGIPLEGRLGARRWMTLYILGLLGGNIAWWLTHPDSMTPALGASG
                     ACFGLLGGYMVCWPNDKVVFPLIFLIRAWPIGLIALFRLGFEIYYVYSIDAGRMGGGN
                     VAHLAHIGGFFLCFAVARFVARGAPSSLDDDSGDPYSMGVGNLGTVPSISEESGHPWI
                     GAEFPLDDVSERVMKCLFTEGDEPETRLAWLEELAEQSVCPVCGSRIDVKTDGYARLF
                     CTNRSSHLDWPTD"
     gene            6283..>10688
                     /locus_tag="HA345_03465"
     CDS             6283..>10688
                     /locus_tag="HA345_03465"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84450.1"
                     /translation="MKVCHLLIVALFLFSSASQATDLTLQQVDSGPTTIASTLQAKIV
                     EGVPPLMCGEQVCPLKDRSHESLPDDRLMPVEDHGWWYAYGPDQDWNGMDDRLQRIIV
                     GEYESVSPTAIMGSDGRKTVAIVVGYAWHPGESDVVLLEELLYSHGWVGQDEGSRLFV
                     FDSVDRVTVDKVPVSALLDVWSLDGVVVVEQQNVMVPMLDKSVPTTNVRADESGIPRA
                     HEMNPSLRGDGVVIAILDTGVDNEHRSLNDFDDVNDDPDSDASNYADPKFVCGFDATQ
                     FGADPNRQDCEDPDDENGHGTHVAGTALGTGGSERQYVGTAPGAYLVDVKVLTGTGGT
                     NSDSTSLGIQWAINNARTNWGGDSTSPLSNNSAQGIQIISMSLGAFGNPVNQDDTGDN
                     GSGISAVMSNRAHDEGIVVVAAMGNDGQKRVPSPASADHAIAVGAIDDRDTTDRSDDD
                     IAGYSNWGPRDDDGDDDEWDELKPTVTAPGSGIMAPRWAEPSPVPIGDSELADNEYQS
                     LDGTSMATPHVAGMVAIMLQKYPALDATAVSAGDRDPAKVREMLEDNSEQKGAVTHPD
                     LSSVWNEKYGFGMVDATMWIDGPSTRAEGWMILQNYNDGSDYLIAGTNAGLRGNLTTL
                     ANNDTAQVSYEIFFQRIDELSKSESSARWTILENPNGTVPIQSDGIFFLTIPIPDDIH
                     SDNDPVVLMRLSLKGLNSTGASNEIPVFFDFLYGRYGVSLDTPTGITSLDGVVDVSGG
                     RTGFGEYALEMRLDDDDPWNTLQNFSSDPDWDCMETAGNQECDEDAPQDNDEPWSVNW
                     DTAEESNGERILPDGRHTIELRLVGENDYISDIIERDVIIDNDPPAPELILSPNVIIS
                     QNGVEKTSAFKETYLKIDVEVQNIGDARIRDVPIQLREDSALRNEVNLPILEAGESTW
                     ISLYWNPTTSGVKALEVVIDPANTNTEDSEFGNTVSVDFTINERPAGVDLSVLPGTIR
                     TSPEIPYPSTFFDLEIPVYNIGSEAATSIALKVEYESYLGWEILEEVNISVIPGGSLS
                     KVKVTLLASNPGLMHLRITAQPPVDLDWNNNVQTYWVPVIEGTLAGSRSIGVLGSDGT
                     PLSHSISGSEGHLISVDANQLSVHRVNDLLDVQTCRTDLEGRWGGSLATATSNDGLSH
                     IVWTGRVVDEFGFFRTHLRYTTIDESCQSPPSIELMPPLLASEGSYFGIDLEVEDGTV
                     VVAGYHRDIFAGGTYQQSTEIFFAHSETAYDEDNWTVTKPVIADVPTLPGTIHPLDVE
                     IGEDFVHLLYTRNHVDNPGIWYAHGELGQSNWLFTQFVGPSAHHPVLAVQASEEGDQI
                     FTTWIVDEGDLDRLVITKADSSWQITNETSILAPGINRVFLVTVGDEILVLMDSLDPL
                     GESQIGIGSISEDGIGFGIRLMLGTLVDADYSLESDKLVILYTRGDSDHRLRGLIYDS
                     PADASSSNIFDRLRLALGVDASTWRTISLAGGG"
BASE COUNT         2491 a         2576 c         2756 g         2865 t
ORIGIN      
        1 cctcaggtgt tcatggtcaa ttggcgatcc gagtcctaca gccctgtggt taacttcccc
       61 gaggctcctg tagtattgga cctgtcatct tctaccccct atggttcacc ggattcaatc
      121 tggacagttg gcaggtatga tgagattcga gggatataca ccactgatct attttcagat
      181 ggtcgaaccc tccatgtcgg gattgacctt ggcggacctg ttggaactcc cgtacatgca
      241 ttcatggatg gtgtaatcca tgcagtagga tacaatgctg aagatggcga ttatggtcac
      301 actgttatca tgtaccatcg gatcgatggc acagatgttt gggccctttt tggtcatctc
      361 gatgaagcct caacgattgg tgtcgagaag ggaacaaaga ttcgtgcagg cgaggtaatc
      421 ggtcgttttg gagatgaatc tgaaaacggt ggatggccac cacatgtcca tgttcaatta
      481 agcttgattg agcctgaaaa tcatgaccta cctggcgttg ttcatcctga tgaaagggat
      541 tgggcactat cggtgttccc tgatccgagg cacgttttag ggtctctcta ctaatccatt
      601 gtgatattgg agaggtggga ttttagattg ttaatcgggc caatgcccgt tggatcctta
      661 cctcgaagaa gcgcgcatgc gatactcaac caatcactca aatgcgcacc gaatagtata
      721 gcttcgagaa gtgaatctcc tgaacagtcc agaacgtgga ttgggacgtc ttgtagagta
      781 tcaagggtcc attctactcg gagccccact cggtcatgca ttccgttcca aacgaaaaga
      841 agaatctgaa catctttctg catttcttcg tcgccccatg caacgatttc gttgtggtgt
      901 agttcaggaa ggatcgatgc ggttgctaga agaccggagt tctcgttaag ttgggttcta
      961 catcggtacc ccatcgctcc aagagatggt gctgacataa tctgcaaacg ttgaccctgt
     1021 agttctcgag cgatacccat cattgatcca tcacctccga tgaggtctag acgatctcgt
     1081 agtccctcca ttcgcgccag catggcatcg agtgcttcct cctccatccg agggagtaga
     1141 ccgagagacc aacacagatt cacttgcgtt ccgaagatat ggccaactgc gctacgcggt
     1201 ggctggccag caggtacatc gatccacatc gccccatcct gattctcgag tatgtcttgc
     1261 agagtccccc ctgatgatat cccaattacg gttccacctt cttccagagc ctcccttaca
     1321 cccgtcagtg tctcttctgt attccctgag taggaggtcg cgatgactag ccattctggc
     1381 ccccaccaag aggggaggcc gtagtccttc cagctgacga atggtaggcc gcctgcttgg
     1441 tctaccatgt tgcagagcat cattccgccg gctcctgatc cacctactcc aaggaagaga
     1501 acacctgacc agtcctgatc cgtatcgatt ccgatgtctc gagttattgc ggtcttcaat
     1561 gctccaggga aacggcgggt ccaacctacc atgtcggatg ggtccaaatt ttcgatttgt
     1621 tccgtgattt gagcgtcttc gttcaaccta atcacactcc atccactcgg actctgggta
     1681 gtgactccca ttcgccgtct atcaaacaga tgcgaacact gattgcatcg gcgtccatat
     1741 cgtagggatt tcctatggta cgcatgctgt agtcgtgagg gtccatgaag tcgaaggctg
     1801 agtcatcctt gcggagtatt tccactatgt gatgctcttg catacgtgat aacaccgtgc
     1861 atttttccaa ggatctccag gttgtaccag ttcgttctag attgtcaaga gccttcagaa
     1921 tggggccgtc ttttgtccac gtatctactc tccattttct cccatcgaat ccaattacgt
     1981 cgcccagagc gtaggccggt tttcgataga gtacagtcaa ccgggtaacg tcaactccat
     2041 ctttgtgacc aactacggag gatgtttcct tgatgcgccc cccatgggac gcgactaagc
     2101 gtttcgccca catgcgtgcc attgctttgg aaccaacctg catgtcccac ccccctttga
     2161 caggcccctc gttggtgatg aagaacatcg gttcgtctcc gatttcctcc aacatggtgt
     2221 caaggcttgc ccgtagattc gcaatctctc cctcatcgag gcggcggcca gcggatctca
     2281 gttgcatggt accttcaaag taggctcctg cctttcgtgt gcatggcaag catactccat
     2341 tggacgtctg gagcaaggtt tcgtgtaggg attcaaaggt gaatccctga atgattcctt
     2401 tcagttccaa cttcaatcgg gttgcccggt catcgattgg ttctgcatgc aggtccatct
     2461 caatatctgt agcttcagga tggacacgta gtgcctcgac aactctctgt tgcattaggt
     2521 cctcctcgga gacgcgagag aagcgtccct cgatctgaat ttttaggcaa ctggggcacc
     2581 gtgtctgctg gattcgttct gggagatcgg atagatggtt ccgttttcga aagcaatctt
     2641 cgcacaaccg ttcagtggtg aggggcggtg gagatgcaca gacgatgcag aaagcgccgc
     2701 tctggtccat ggtccaacct caaacccgtc gtcggggctc tcgtattcaa gcgaccggtc
     2761 attcttcgct caaatctgag ccttcgcgca ccttactagc actctccatg gactcgactg
     2821 cagcatcgag ccttgcatcg aggtccttca tccgtagagc ggttagaatg gaatgtccga
     2881 gaagaagacc gatgagtagt ccataggcaa gtgcaagagc gagcatatca tccatcttta
     2941 cgcctccaac attgtgagca ttttctcaac ctcgttttcc atgcgcagta ggcgcatggt
     3001 catcaaggtc tggccgatga ataggatttg catcgatgct gcgccgatta accagatttg
     3061 gaggatgaaa gggtcaatcc cactatcttc gccgccgccg aggactggcc ctggatgccg
     3121 ttcttgccac catctagttg ccatgtaggt taggggtacg agcccgaatc caaagatacc
     3181 aactgctgat agtgagtctc gtatttcggc tgtatcttcg ctatttcgtt cgccaagggc
     3241 tacgaacaga gcaactccag cgagtacggc gaatgtgttg agcctgacat ccgaaaagtc
     3301 ccatggtgtg ccccattcag cggctcccca gattgggcca gagatgagga cgcctaacga
     3361 atagaggagg ccaagtcggg ctccagtcac acccaatctc catccggctt ccgatcggcg
     3421 tagataccag gcgagtgacc ctccgaatag tagagcgaat ccggtgaagg atacccatgc
     3481 aaagggaaca tgaatgaata ggattctgta cgcttctggc gcggtgaatc cagcattttc
     3541 tcccatggca ggggcttcaa ctaaggccaa gtagacggta acgaggaggc caagagaacc
     3601 gattccaagg agccaaggaa tcgccctatc tgcggcactc atacattgct caacccatgt
     3661 gggcgcttga accatcgtgt gcggccatgc cttattccga tagagcccaa gctagtaaga
     3721 agaggccgac aacactcgca taggatactg cgatgccagt ccacgcttct gcatatgctt
     3781 ccaaatagat tgcatctagg acgctacaca tcgttagcag aatccacgca aagggtgtca
     3841 agagcagtat catcagagcc ggacgtcggc cttgaccgaa gcgatagtgg attagccctg
     3901 ctgcacaggg gatatctacg aggagtccga taatcagaat tgtttgaatc catgcgtcag
     3961 gcgaatcagg agttggcagg aacataatta cgccgattat tgcgaggatt accggaacca
     4021 cgctcatact tgcgaatgtg acatggaatg ggaggctccc ttggaggcta gtcgcccata
     4081 tactgcccat ctctctatca ctcaatcgat ccatcagaga tgggcgtatc attgccgaaa
     4141 tcatggcagg cgagagcgcg agggcggcct tgcctaggaa tggaatgtct gcttgttcaa
     4201 gtccggctcc aattagaatt ccaaaggcga tgagaccagg taaccatcgt gctgctggag
     4261 tagagaactc tctcaaatca agccgtaagt tccatctgaa catgccacct gaatacgcgt
     4321 ttgaagcctt gtatatcctt gcagtcaatt cgttatgatt ccgttcactt cgtaggattt
     4381 ccattccatt cgcatccaat ctttctacct cttcggatgc ggagataagt cgtggatcgt
     4441 gggttgcaac tatgactgaa tgccctgaat tgacagtatc ctgaatcttg ttgagaagga
     4501 tttcgacgcc aggctcatcc aatccttctg acggttcatc gagaagaaca ggtactggtg
     4561 atgtagaggt ctcagcaacg atgaatgccg aggctacttc caaccgtcgc cgcaggcctc
     4621 cggataacca agcaattcgg tcgtgccgtc gatgatccag cccccaatga ttcaatgccg
     4681 cgataagagc ctcgtcctcc atcttggctc catgcatctg caaggtagtt tggagatgtt
     4741 cgagaggcgt agctgccagg gtagttcccg cagactgggg gcaccagcca atctgttcgg
     4801 tccggaaagc gtgccggcca tcttggtcgc ggatgcctcg attaccgtgg aacagggctc
     4861 ccgatcttag gggtaggagt cccgctagag aacgcagtag ggtggatttc ccacttccat
     4921 ttgggccgat gatggtgcat ctttcccctg ggtgtagttt gaagtcaaat tcctctagta
     4981 ttgtgaggcg ccctctcagg acagtagccc tctccagagc aagtagaggt gcatcgtcca
     5041 tggtctgcga ccgtggccct acccttgagc ctcacggaag gtagattgga cgaagggtcc
     5101 atgcacaaga taaggtcaca ttcgaatgga gaaccacatg attcccgtga ccttctctca
     5161 attgtcgtgg agtgattcta tctggcttct tctctttttt acggcagcag tttgccccta
     5221 cattgccgcc cgagtcaata gaacaccagc ctctcttgcc accgttattt ctctgatgct
     5281 tgttgcagtg cttcaattcc tcaatgcctt aatcgggtct atgactggct ctgattttga
     5341 tccggtctat tttggtgcac taattcctgc atgggtattg gaaccgagtc atgttcatcg
     5401 gcttttcttt gccgggtggt tacatggggg ggcaatgcat gtgcttggca atatcctcgt
     5461 tgtggctcta attggaatcc cgctcgaagg tcggctaggg gctcgtcgtt ggatgaccct
     5521 ctacattctc ggattactcg gtggaaacat tgcttggtgg ctaacacatc cagacagtat
     5581 gacacccgca ttgggtgctt ctggagcctg ctttggccta ctaggtggct acatggtctg
     5641 ctggccaaat gacaaggtcg tcttcccatt gatcttccta atccgtgctt ggcctatcgg
     5701 actgattgct ctttttcggc ttggattcga gatatactat gtctactcaa ttgatgctgg
     5761 tcggatgggc ggaggaaacg tcgctcatct cgctcatatt ggcggattct ttctctgctt
     5821 tgccgtagct cgttttgtgg cccggggcgc tccctcttca ttggacgatg attcaggtga
     5881 tccgtattca atgggagttg gaaacctcgg aacagtcccc tctatttcag aagaatctgg
     5941 gcatccatgg attggtgctg agtttcccct cgatgatgtt tcggagcgag taatgaagtg
     6001 cctttttaca gaaggtgatg aacccgaaac tcgtcttgct tggttagaag aactcgctga
     6061 gcaatccgta tgtccagtat gtgggtcgag aattgatgtg aagaccgatg gctatgctcg
     6121 tttattctgt acaaaccgtt cctctcacct tgactggccc acggattgac tctgtaattc
     6181 caccgtaggc ggaaaggtcc acaccgtgct gagtatgaaa ctccagcagg gggggcttat
     6241 agtgcggacc atcctccttc agattcgacg gaggtcgttc aattgaaggt ctgccatctt
     6301 ctcatcgtcg ccctctttct gttttcatct gcgtctcagg ccacagacct tacgcttcaa
     6361 caggttgatt ctggccctac aacaattgct tcaacactgc aggcgaaaat tgtcgaagga
     6421 gttcccccac tcatgtgcgg cgagcaggtc tgcccactga aggatcgttc tcatgagagt
     6481 ttaccagatg atcgtctgat gccagtcgag gatcatggtt ggtggtacgc ttacggccca
     6541 gatcaagatt ggaatggaat ggatgatcgc cttcaacgga ttattgttgg cgaatatgag
     6601 tcagtatcgc ctaccgccat catggggtca gatggccgta agacggtcgc aattgtggtt
     6661 ggctatgcct ggcacccagg tgaatcagat gtggtactgc ttgaggaact cctgtattct
     6721 catggatggg tcggccaaga tgaaggatca cgattgtttg tctttgattc tgtagaccga
     6781 gtaactgtgg acaaagtgcc agttagtgct ctactcgacg tctggagttt agatggagtc
     6841 gtcgttgttg aacagcagaa tgtcatggtt ccaatgttgg ataagagtgt tccaaccact
     6901 aatgttcgag ctgatgaatc tggtattcct cgtgctcacg agatgaatcc ttcattgaga
     6961 ggggacggag tagtcattgc gattcttgac acaggtgttg acaacgagca tcgttctttg
     7021 aacgattttg atgatgttaa cgatgaccct gattctgatg cctctaatta tgcggatcca
     7081 aaattcgttt gtgggttcga tgcaactcag tttggggcag accctaatcg tcaagattgt
     7141 gaggaccccg atgatgagaa tgggcatggg actcatgttg caggtaccgc tctaggcaca
     7201 gggggttctg aacggcaata tgttggtaca gcacctggtg cgtatctcgt cgatgtcaag
     7261 gtcttgacag gaactggcgg gacaaacagc gattctacct cattaggtat tcagtgggca
     7321 attaacaatg cgagaacgaa ttggggcgga gactccacca gcccactttc gaacaattct
     7381 gcgcaaggta tccagattat ctctatgtca ctcggtgctt ttggtaatcc tgttaatcaa
     7441 gacgatactg gagataatgg cagtggaatc agtgctgtaa tgtcaaacag ggctcatgat
     7501 gaaggcattg tagtggtagc tgcaatgggt aatgatggcc agaagcgagt tccttctcct
     7561 gcatctgcag atcatgcaat cgcagttggc gccattgatg acagagatac gacagatcgg
     7621 tctgacgatg atattgcagg gtattcgaac tgggggcctc gagatgacga tggtgatgat
     7681 gatgaatggg atgaactcaa accaactgtt actgctcctg gatctggaat tatggctcca
     7741 cgatgggcag aaccgagtcc agtaccaata ggggactccg aacttgcaga caatgagtat
     7801 cagagcctag atggaacgag tatggctact cctcacgtag ccgggatggt tgcaatcatg
     7861 ctgcagaagt accccgcttt ggatgcaaca gctgtcagtg ctggtgatag agatcccgcg
     7921 aaagttcgtg agatgctaga agacaattcc gagcagaagg gcgctgttac gcatcctgat
     7981 ttgagttccg tttggaacga gaagtatgga ttcggaatgg ttgatgcaac aatgtggatc
     8041 gatggtccaa gcactcgtgc agaagggtgg atgattcttc agaattataa tgatggttct
     8101 gattatctga tcgcgggcac aaatgcaggt ttgcgtggga atctgacaac attggcaaat
     8161 aatgacactg ctcaggtatc ttacgagatt ttctttcaga gaatagatga gttatcgaag
     8221 agcgagagca gcgcaaggtg gacaattctt gaaaatccaa atgggactgt cccgattcaa
     8281 tctgatggga tattcttcct cacgattcct attccagacg acatccatag tgacaatgat
     8341 ccagtagtgt tgatgcgctt atccctgaag ggcttgaact caacaggggc cagtaatgaa
     8401 attccggtat tcttcgactt tttgtatggc cgatatggag tgtcattgga caccccaact
     8461 ggtatcacct ctctggatgg tgtggttgat gtcagtgggg gccggaccgg attcggggaa
     8521 tatgccctcg agatgaggtt ggatgatgat gacccttgga atactttgca aaacttctct
     8581 tctgatccgg attgggattg catggaaaca gcaggcaatc aagaatgtga tgaggatgct
     8641 cctcaggata atgacgaacc atggtcagtg aattgggata ctgcagagga atctaatggc
     8701 gaaaggattc ttcctgatgg ccgacataca atcgagttgc gcttggtcgg tgagaatgat
     8761 tacattagcg acataatcga acgtgatgtg attattgaca atgaccctcc ggctcccgaa
     8821 cttatcttat caccaaacgt cataatctct cagaatggag ttgagaagac atctgcgttc
     8881 aaggaaacat atctcaaaat tgatgttgag gtacagaata ttggcgatgc taggattcgt
     8941 gatgtcccga tacaacttcg agaggatagt gcacttcgaa atgaggtcaa tcttcctatt
     9001 cttgaagccg gtgaatctac ctggatttca ttgtactgga atccgacgac atcaggggta
     9061 aaggcccttg aagtggttat tgacccggcg aatacgaaca cggaggattc cgagtttggt
     9121 aacactgtta gtgttgattt tacaatcaat gagaggcctg caggcgtcga tttatctgtc
     9181 ttacccggta ctatccgtac atcgccagaa attccgtatc cttctacctt ctttgacctt
     9241 gagattccag tctacaatat cggttccgag gcggcaactt ctatcgcgtt gaaagttgaa
     9301 tatgaatcat atcttggatg ggagattctt gaggaggtca atatctctgt tattccgggt
     9361 ggttcattga gtaaggtcaa ggttactctg cttgccagta accctggtct catgcatctt
     9421 cggattaccg ctcaaccccc tgttgacctt gattggaaca acaatgtcca gacctactgg
     9481 gtacctgtaa ttgaggggac actcgcaggt tctcgatcta tcggagtcct tggatccgat
     9541 ggtaccccgt tatctcattc tatttctggt tctgaggggc acctgattag tgtcgacgca
     9601 aatcaactca gcgtacatcg tgtgaatgat ctactggatg tccagacctg ccgaactgat
     9661 ctcgagggtc gttggggtgg atcattggct acagccacct caaatgatgg tttgagtcat
     9721 atcgtgtgga ctggccgtgt ggtggatgag tttggtttct tccggacaca tcttcggtat
     9781 actactatcg atgaatcctg ccaatcaccc ccgtccatcg aattgatgcc tcctctactc
     9841 gcttcggaag gttcctattt cggcattgac cttgaagtgg aggatggtac cgttgttgtc
     9901 gcagggtatc accgtgacat ctttgcaggc ggtacttatc agcagagtac agaaattttc
     9961 ttcgctcatt cagagacagc ttacgatgaa gataactgga ctgtaacaaa acctgtaatt
    10021 gcagatgtac caacacttcc cggcactatt caccccctag atgtcgagat tggcgaggat
    10081 tttgtccatc ttctttacac gcgaaatcat gtggataatc caggcatatg gtatgctcat
    10141 ggggaactgg ggcaatcaaa ttggttgttt acacagtttg taggtccttc tgcgcatcat
    10201 ccagtgcttg cggttcaagc ttcggaggag ggtgaccaga ttttcacaac atggattgtt
    10261 gatgaaggtg atcttgaccg cctagtcatt accaaggcag actcttcatg gcagattacc
    10321 aatgagacct ctattctcgc cccaggcatc aatcgtgtat tcttagtgac ggtaggagat
    10381 gagattctcg ttctgatgga ttctcttgac cctctcggcg aatctcagat tggaatcggt
    10441 tcaatatctg aagatggaat tggttttggt attagattga tgttagggac gctcgtagat
    10501 gcagattatt ccttggaatc agataaactc gttatcttgt acacacgagg tgattctgac
    10561 caccgtcttc gtggtttgat ctatgactcc cctgctgatg cctcgtcttc gaacattttt
    10621 gatcgtctga ggttggctct tggcgtggat gcttccacat ggagaacaat tagtttggct
    10681 ggcggagg
//
LOCUS       DUKB01000100            4856 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_222974, whole genome shotgun sequence.
ACCESSION   DUKB01000100 DUKB01000000
VERSION     DUKB01000100.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4856)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4856)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4856
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_222974"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(98..682)
                     /locus_tag="HA345_03470"
     CDS             complement(98..682)
                     /locus_tag="HA345_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84451.1"
                     /translation="MADEYKIEQLIDREVYVGGKLVGTVRGQRFNPRPDNVRSLRLDV
                     MPEVAQEYMRKPAFSAPLAKELIHSLQPDGTIRISKSMRELQRRWRNTIRIEEGLYAP
                     DEMLGRAVMDNDSNEIGTVVDLQKVKRTFKGAVVKLLPRVSSRMGLPERILIPVDQFS
                     KTTSRLDEVILSSTLERVVALTSYARLNGLEIEE"
     gene            1140..2660
                     /locus_tag="HA345_03475"
     CDS             1140..2660
                     /locus_tag="HA345_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007804508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HIH84452.1"
                     /translation="MAPLHILQEIRKLSGSDSPVTIGLEDERILQFCDSDPKLVQAIE
                     EARERYNSLCSRGFNQGEIGGAPSVFEMEESEQIRILQSKFVNFYSPATINPYVALAA
                     RGPWIVTSKGAVVHDNGGYGMLGFGHGPEEVMEAMGENWVMANVMTPSFSQYTLSMML
                     ERELGHTRGSCPFTSFICMNSGSESVTVALRIADINARIHTDPGGRYEGRRIVMLAID
                     EAFHGRTDRPAQISHSCKGKYDDRLATFRDRDNLLLVPANDISALQEVFARADAESLF
                     IEVMAIEPVQGEGNPGQCVTREFYDEARRLTKEHGSMLLVDSIQAGIRGQGCLSIIDY
                     EGFQDAEAPDFETWSKALNAGQYPLSVLGMTPRSAELYVVGIYGNTMTTNPRALETAV
                     SVLKQMTPKLRQNIKERGNQLVAGLSAIQDEMPDVVLKVQGTGLLCCAELNPETHKVV
                     GFGEVEETCRKMGLGIIHGGQNALRFTPHFRISAEEVELVIDLVRAALIRHTEKSS"
     gene            2673..3149
                     /locus_tag="HA345_03480"
     CDS             2673..3149
                     /locus_tag="HA345_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84453.1"
                     /translation="MSSLKFNRVDAYAPGQDDLLNLWVRRIMRGEDIELDSTVRYWVH
                     IRDIERAEEDLRVHDEVGEYDICGRRAWSQQMVLSEINLLWNRYSATISGTHTAETLG
                     DIPSPAALSVDGRAERPNLAPLHEALLRCGSDGWRPLTPMRVGIMECIAFAEIAFD"
     gene            complement(3152..>3353)
                     /locus_tag="HA345_03485"
     CDS             complement(3152..>3353)
                     /locus_tag="HA345_03485"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008604516.1"
                     /note="transforms a conserved lysine residue of initiation
                     factor 5A into deoxyhypusine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HIH84454.1"
                     /translation="VIWWNQYRGGLDSAVGITTAPEFDGSLSGARTREAISWGKIRPD
                     APHVTVEGEASVLLPLIGADLF"
     assembly_gap    3354..3658
                     /estimated_length=305
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<3659..>4068)
                     /locus_tag="HA345_03490"
     CDS             complement(<3659..>4068)
                     /locus_tag="HA345_03490"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: protein motif:HMM:NF014027.1"
                     /note="transforms a conserved lysine residue of initiation
                     factor 5A into deoxyhypusine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HIH84455.1"
                     /translation="GNVIVPNECYGEILEPVILPWLEEIEAERKAKNPNNPWLGFGSV
                     ELCWAFGDRIEDESSFLHQVAKHRIPVVIPGLSDGSIGAQLFMHRQKSPDFMIDFLAD
                     EQILSDLTWTADRSHALMIGGGISKHHVIWWNQY"
     assembly_gap    4069..4371
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4372..4791)
                     /locus_tag="HA345_03495"
     CDS             complement(<4372..4791)
                     /locus_tag="HA345_03495"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: protein motif:HMM:NF014027.1"
                     /note="transforms a conserved lysine residue of initiation
                     factor 5A into deoxyhypusine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HIH84456.1"
                     /translation="MTYDRDDFDQPVEDYDLRSTETISDLLRQMKSAGGFTATKLIDA
                     RDILQNAISETKSGNEDKKVLNWLSFPACLMATGTRGFFHEAVRSRAYNVISTTCGTL
                     DHDIARTFRDYYHGSFDLDDVLLGNVGLNRLGNVIVPN"
BASE COUNT         1047 a          978 c         1018 g         1205 t
ORIGIN      
        1 ctcccggtta tcagccgggt gctcgaacca agctaagcta cccgcccttg ggtatgattt
       61 gcggaatcac ctttccggtt aaagcgtgac ggtcacatca ttcttcaatt tcaagaccat
      121 tcagccttgc gtaagatgtg agtgctacaa ctctctctag tgttgatgaa agaatgactt
      181 cgtcgagacg cgacgtcgtt ttactgaact gatctactgg aatcagaatc ctttctggta
      241 gtcccattct agaactaacc ctgggtagga gttttacgac agctcccttg aatgtccttt
      301 tgaccttctg aaggtcgaca acggttccaa tttcgttact gtcattatcc atcactgctc
      361 ggccgagcat ttcatcagga gcgtagagcc cttcttcgat acgaattgta ttcctccatc
      421 gtcgctgtag ttccctcatc gacttagaga tgcgaattgt cccatctggc tgtaggctgt
      481 gaatcaactc ctttgcaagt ggtgcactga atgcaggctt acgcatgtat tcttgagcta
      541 cttctggcat cacatctagt cggagtgagc ggacattatc ggggcggggg ttgaatctct
      601 gccctcttac ggtcccgacc aacttgccgc ccacgtacac ctctcgatca atcaattgtt
      661 caattttgta ttcatctgcc atttcctttc tctcctgtgc gtttgtgctt cccatccact
      721 tctcgctgct ctgtcgtgat tcaaacggca tataaaagaa tcggaatatc aaagcggata
      781 atctaattga aaaatactgt aatttcaact cttttcaatt gaaaaacgtc ttcatttgca
      841 tattttatcc gcccttcaac aaattcaatt tacgattgaa ttagatttga atatgtttaa
      901 aattccaatt gaaacaagta aaatatgatg tgatttcgaa atccactctt cattgaaaca
      961 atgatatggt tttgatcagg tctcttaatt ggttggatat gactcttttt caattgaaaa
     1021 tctattgaat tcatgtattt tctacaccgt taattcagtt tttcttgcaa gggtggcttg
     1081 ggaaccttga tttggggccc tttggaacta ggggcatgga ccggtatccc gaggcaccac
     1141 tggccccact acatattctg caggaaatcc gtaagctcag cggttcagat tctccagtaa
     1201 cgattggact tgaagatgaa cggatactac agttctgtga ttcggatccg aaacttgtac
     1261 aggctatcga ggaagctaga gaacgttata attctctatg ctccagaggg ttcaatcaag
     1321 gagaaatagg gggcgccccg tcagtttttg agatggaaga atcagaacaa atacgaattc
     1381 tccaatctaa gttcgtgaat ttctattctc ctgctacaat caatccgtat gttgctttag
     1441 cagcccgagg cccatggatt gtaacctcca aaggtgcagt tgttcatgac aatggtggtt
     1501 atggaatgct gggttttggg catggtccag aagaagtaat ggaagctatg ggggaaaatt
     1561 gggtaatggc taatgtcatg actccctctt tcagccagta cacactttct atgatgcttg
     1621 agagggaact tgggcatact cgcggatctt gccccttcac tagtttcatc tgtatgaata
     1681 gcggttcaga atcggttact gttgcattga gaattgctga tattaatgct cgaattcaca
     1741 ctgacccagg tggcagatac gaagggcgga ggattgtcat gttggcaatc gacgaggcat
     1801 tccatggccg aacagaccgt ccggctcaga tatctcattc gtgtaaaggg aaatacgatg
     1861 atcgtctagc taccttccga gatagagaca atctccttct tgttcctgcg aatgacattt
     1921 ctgcgttgca ggaagtgttt gctcgtgcag atgctgaaag cctcttcatt gaggtcatgg
     1981 ccatcgaacc agttcagggt gagggtaatc cgggtcaatg tgttacccgt gaattctacg
     2041 atgaggcacg tcgtctgaca aaggagcacg gtagcatgtt actggtggat tccattcaag
     2101 ccggtatccg gggtcaaggt tgcttatcca tcattgatta cgagggattc caagatgctg
     2161 aggcaccgga ctttgagact tggtctaaag ctttgaacgc cggacagtat ccgttatccg
     2221 ttctcggaat gacgccccgt tctgcagagc tgtatgttgt tggtatctat ggtaatacga
     2281 tgacaacaaa tcctcgtgct ctggagaccg cagtatctgt actcaagcag atgacgccta
     2341 aactacgtca aaatatcaag gaacgaggaa atcaactcgt tgccggcctc tctgcaattc
     2401 aggatgaaat gccagatgtt gtcctaaagg ttcaggggac cggcttgctc tgttgtgctg
     2461 agttgaatcc tgagacgcac aaagttgtcg gtttcggtga ggttgaagag acctgtcgga
     2521 aaatgggtct cgggattatt cacggtggtc agaatgcctt gcgattcacc ccccatttcc
     2581 gaatcagtgc tgaggaggtt gaacttgtca tcgatttagt tcgtgccgca ttaatccgtc
     2641 atactgagaa gtcttcttga tgaggggatg ttttgtcgtc tctcaaattc aatcgagtcg
     2701 acgcatatgc tccaggtcag gacgatttac tcaatctctg ggttcgcaga atcatgaggg
     2761 gtgaggacat tgagctagat tccacagtcc gttattgggt tcacatcagg gatatcgagc
     2821 gagcggagga ggatttgcgt gtccatgatg aggtaggaga atacgacatc tgtgggcgtc
     2881 gagcatggag tcaacaaatg gtcctctccg agatcaacct cctttggaat cggtatagtg
     2941 ctacgatttc aggtactcat actgcggaaa cattgggcga tatcccctcg ccggctgcat
     3001 tatctgtaga tggtcgtgca gagcgtccca atctagcccc tctccatgag gcattgctcc
     3061 gatgcggaag tgatggttgg aggcctctca ctcctatgcg agtcggtatc atggaatgta
     3121 tcgcatttgc ggagatagca ttcgattgaa ttcagaagag atcggcaccg atgaggggta
     3181 agagaactga ggcttcacct tcgactgtta catgtggtgc atcgggccga atcttacccc
     3241 acgagatagc ctctctagtc cgagcccctg acagcgaccc atcaaattct ggtgcagtcg
     3301 taatcccaac tgccgaatct aagccacccc tatattgatt ccaccagatt acannnnnnn
     3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnat
     3661 attgattcca ccagattaca tggtgtttcg agatccctcc tccaatcatc agggcgtgag
     3721 agcggtccgc agtccatgtt aggtccgaga ggatttgttc atctgcgagg aagtctatca
     3781 tgaaatcagg agatttctgt cggtgcatga atagttgagc acctatactt ccatcggata
     3841 ggccaggaat tacaacagga atacggtgtt tcgcgacttg gtgaagaaag gaggattcat
     3901 cttcgattcg atcaccaaat gcccaacaga gttctacaga gccaaaccca agccatggat
     3961 tattgggatt ttttgcctta cgttctgctt caatttcttc caaccaagga aggatgactg
     4021 gttcgagaat ctctccatag cattcgttgg gcacaatcac gttgcctann nnnnnnnnnn
     4081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ngttgggcac
     4381 aatcacgttg cctaggcggt tcaagcccac attgcctagc agaacatcat ccaggtcgaa
     4441 ggacccgtgg taatagtctc tgaaagttcg tgcaatatcg tggtcgagag taccacaggt
     4501 ggtgctaatc acattgtatg ctcgacttct aacggcctcg tggaagaatc cacgcgtccc
     4561 tgtcgccatt aggcacgcag ggaacgagag ccagttgagg accttcttat cctcgttccc
     4621 agattttgtt tcagaaatcg cattctgcag aatatcgcgt gcatcgatga gctttgttgc
     4681 agtgaatccc cctgccgact tcatctgacg tagtaaatct gagattgtct ctgtggagcg
     4741 caaatcatag tcttcgacag gctggtcgaa atcatctcga tcataggtca tgtactatgt
     4801 gcgttcgacc ccgcctatcg tctatccgac gtttttttta atgatttttc aattga
//
LOCUS       DUKB01000101           11074 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_43882, whole genome shotgun sequence.
ACCESSION   DUKB01000101 DUKB01000000
VERSION     DUKB01000101.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11074)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11074)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11074
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_43882"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..4337)
                     /locus_tag="HA345_03500"
     CDS             complement(<1..4337)
                     /locus_tag="HA345_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84457.1"
                     /translation="MSGNAGWSVGRGRISAIGLVCLFVLASMVPLLGSTTEVSADPAA
                     RHIYTFSDGSTSTIALASPGSPARNIMVTLPNGAEVLDAEVTLSGASSTGWNQVISQN
                     RADWAEGTSNGVDPRADDLALGMTSPDMEFDGYGLDSMTTTSVSSAWSDNSSFTIRQP
                     HSSNATESRFSQQRSVSAATAGTYAGASFTYRDWIVSSDLRASNINSMLRLLHANNGT
                     QVQGSSMNNGLISLDLSGCSLPSLPFTWSGYGIRDWAISDDERAFGLLTTYYSSTSSQ
                     YHRIVEFDIRYPTTWTCLAVHDPSSNNHGDYSGISYDRTRDVVWVNHNLLNRVVAYHA
                     EDGTFERNATLYYNYFSTSGTPRGMVVNGSYVYFRSYASWQQDRLEAYAITGTLGSTL
                     TKQQGTTSISANGYGLYYNGQRLVTQDYYAWSTSPMYREYGSGWAYEITPMPGTSSWV
                     SLPMDVGETILSANMEVSWSATAAGDRVDYWVSADNGTHWEQVTNNQTTHFTHTGEVL
                     RWKLQLVGSTAVAWWSQVQYSTAYESSGDWSSKLVQTGTEIGRIRATWLSDEPTGTSV
                     EVHVSADNGTNWLTVQNNVEVQFDNSTFDGSGNRLKYRTLMTTTDSTVTPVIQNLVIN
                     YEEGWPASVRLDIGNDGDMEYTHVGVLTDPLVASNQAIVSALNTHAVQNGDGGTDIIF
                     AIHAGSAGRVMLSNLDITYRYMSRVIEATMEGGTIVPDGEHRNLIVRAASGDVATSLL
                     RLDVDLLSTQGSTPRLTWESGNVCSISNDPSGLVSFDAANCSSQEVGGITSIRLPIMP
                     NWAWDDESGVEVRVDLEDDLGLAVDGYETTDLNLRIENDIVLGDLEVTDEEGRVLLPS
                     DWMRGGRNATFSGTIAFEDTARYPKPGEFGMRVVGQNLTLDGQPLEERKSFVNQTNPS
                     YGLYSMSFQTPFQSSPGGMLFQVETFLMQNGSTYVNSNQNTVKLVLDGVSPLVIGATP
                     SEGSEMHAGSQPISITIQDSVDPPEEITVHYWIENQSDLNYNKVPDPSEYSQMLFRSP
                     EIQAGGINIFNGIIDDSWNVHKERVSIYVTGQDTSGNSIALGGDAVCPEPPSPCNKDR
                     SGVSDWTEDLTSYITREEFEPRLISENSTIIGHDDETPLHPGIQYTARLRIQDGNGWN
                     DIRTIQLALAGDLNDPRQSIYGNVTLDANGATTIDFESGGDGLAVSNLYTSYGPDPFD
                     TSDDPSTLFVDLRFQLTWWFPEEFDTDGSQTFIPVVEVTDWPCNEGEVVPCHDDRGGL
                     GFDEWSLDNDLRFDMEPGHLTAVDLATGRNVFVSEGGEPALIAAGQVVRIEGRLLFSE
                     DQIPAPGGACDIVVADLENTWAAVPRDDGHFTLDILVPNLQSGYLDASMILEALPGLA
                     TDETLTTPRLQLSVDGTPPGIDSISPNGDVRIDQANQVNVNLFTTDSSGFDDSIMTVL
                     HYRVRAGSS"
     gene            complement(4386..10100)
                     /locus_tag="HA345_03505"
     CDS             complement(4386..10100)
                     /locus_tag="HA345_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84458.1"
                     /translation="MRRRQTALLLVVLMLSGLSFASQTRPSAEVLTVNPGDTEGEGPP
                     VTDQDKDGIPDLHEDLFSPLINVSYRGDIVTIKGLDATNGSDNISDNDRDGLSALMEY
                     CWPYTLDTCYSERKSLTGKPPGLTESGLREFLDPRVADTDGDGLPDGYEVYMCLNEGV
                     GFQNASFAWECSVFDPLDPSDGLLESDRCSDYELGCGDGFDVNSDGVIENQEAYTNSE
                     EYNYGAPSDWVTEIDGLRCFGDMGSIVDGACTDLDRGIRDLNSGWLGTNPLRNDSDDH
                     YWSGAQLESQSRRGDGIIDGWEVYFGLDPLNSSDAILDADLDGWDVDRDGQITPDTSL
                     GTIALGEAFSNLQEYRVHDDDGYGVRSGLKSVLHGLALQPIRIYDQGTSPDLLHHDVV
                     EAISVDERQQIVLGTRYGVSVLNLDADLTTSFELPAGVNLNAMYLWNHPTGEHLLLGT
                     NIGFHTLALDSSGLVVVNSLVSVEIGPILNLNPLDLGGSMMSMIGGGPNGEVWVIPVE
                     TTGQIGSAERSVELESKLSDFGGARLLSAAHVSVTGAPQVLYVGSSHGLLAWNTSDLQ
                     GGAEPYWIFDNVTAEQFVRPADPFNTSKSAIVNVLEIDGPRDEDGQITNQQILWVGTA
                     GGLHAYDLVAGPNDPFNAFNRERMENVDLDQDGGNDIRSILIADNQLIVGSAAGTWVL
                     EGGHAMIFGIQEGHTRIPGPIQSIALGTMNNVSKLYAGINPGRFANIAPIDPLSNDSD
                     EDGMPDGWEFAYDLDPTDPYDRDLDRDNDGVRFDPSSNYVDRPWTNLDEYRFIATTAE
                     GFNGTDPLNTDTDGDGLSDGSEYWGWFYADTNFTCYYLNGDYLCDDSKGQAAASVYLN
                     GWISTGSSGGTDLPTDPSNTDTDGDGMPDGWEIQNRRWIGADFTGGNDWSLDPFDAAD
                     ADEDADGDGLTNLCEYNWQIILDQIRLEGDPLRGETAEAAANWTAVDPNNVDSDGDGL
                     PDGWEARYSCQWIPSNAGINPMNGSDALNNPDGDGYDVNRDGIIGPDEALNNWMEYHI
                     IDRILLANASTDGRPHPDGFVTTLFDSSWASGPTTSFGQQSSDGVQAMVPVPADQGSL
                     DPLLSDSDNDGMPDGWEVWFSRWDSFSEEWTLNPANEEDAAGDPDGDGLTNWEEYASI
                     KNEDNEVSTIVSSPQFYLLVTPSVTTPQAWSSAGGNLSFGSFMSDEQYNLTGPTTDPN
                     NADTDGDGLLDGIELLFTAWNETNEEWTLNPLVAGDGGYDGDQDAVTDLEELNLTRSN
                     PVNGGLAPPDAPKMWEEAAIVDPNEATSRIYRILFSKEGRASIAISQYNDWQTSGFAP
                     PLLATLLGITDPNDPDTDDDGMLDGYEYWFTEWDLDANIWSMNPLTGTDIDADSDEDS
                     YDCNGNGGIDDEERFTNLREYESRSYGKFSEINNIDAGVTLRTFGQDALDAMVQEGGM
                     TEEQATQALYNAFVSKDIKSSERVQRINTAYADNFNLSLLGISDPTHPDSDGDGLPDG
                     WEFCYALYRNTMPANDYRWTTNPVNPLDVDYDADEDGWFDRDSTKPVAAQGSWQGRVF
                     TEGPVEDQMSPGNSYLWFTNAMEYRNQTNPILSDSDGDDRRRIFMDVDGNQIYDFDGN
                     FSDGREVFKYGSNPIDNDTDGDMLPDWYEYAHGWNETNSNWSSYQQVSVIWQEIGQDN
                     WKPLTVSTDSQGDQSIQRPTLDWTWVSMDPTNPNDAMDDPDNDGGWDCSGAVCVYIRY
                     NNFQEFFGITNVSLSNAALVRQTPLLDCDGSPIEEWWQFREYLLGFCLQNPVNTNYMR
                     MNKVNTTDQLYAHIVLDNDPDYMEQTYEDNIKLVFGEWTDPWNRTFGDENHLPNLGNG
                     EFVWGWYLLDIDGDQVADGTHPFNYDTDGDWLNDHFEIEDDLLDGIRGNGGSPIRYDD
                     RATT"
     gene            10275..>11074
                     /locus_tag="HA345_03510"
     CDS             10275..>11074
                     /locus_tag="HA345_03510"
                     /inference="COORDINATES: protein motif:HMM:NF024118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84459.1"
                     /translation="MEIVHLGSGSRGNAAMVRTEETTILIECGFSMRQIERRLAMVYA
                     KPEDLDAILITHHHGDHGKSARAAAKKWDVEIHANFETCARLSLDPVNQCRVFESLER
                     RDLGPDLSMLPIPIPHDDAENVAFVLNGPEGRAGFMTDLGEPTEELIKHMSGCQHISV
                     EANYDVNRLFGNMKYPQSLKDRIHGRGGHLSNHQTAMMLDRLVHDNLDSIVLCHLSSE
                     NNAPHLAESEVLCQIDEDFKGEIQISKQDGPEFTHWLGQRAAEPLRWT"
BASE COUNT         2993 a         2899 c         2538 g         2644 t
ORIGIN      
        1 tcactcgaac ctgcacgaac acgataatgg aggacagtca taatcgaatc atcgaaccca
       61 ctcgaatctg tcgtgaatag gttgacgttg acctgatttg cctgatcgat tctcacatca
      121 ccatttggag agatagaatc aatccctgga ggtgtaccat ctacagaaag ttggagacgc
      181 ggtgtggtca aggtctcatc agttgcaagc ccaggaaggg cctcgagaat cattgacgca
      241 tcgaggtaac cagactgaag gttgggaaca aggatgtcaa gggtgaagtg accatcatct
      301 cgaggaacag cagcccatgt gttctcaagg tccgctacga caatgtcaca agcgccacca
      361 ggtgcaggaa tctgatcctc actaaacaag aggcgcccct caatacgaac aacttggccc
      421 gctgcaataa gggcaggttc gcccccttca ctgacaaaca cattgcggcc agtcgctaga
      481 tcaactgctg tcaaatggcc gggctccatg tcaaaacgga gatcgttatc gaggctccat
      541 tcatcgaatc caagaccgcc ccgatcatcg tgacaaggca caacttcacc ttcgttgcac
      601 ggccaatctg tgacttctac gactggaatg aaggtctgag aaccatcagt atcgaactcc
      661 tcggggaacc accaagtaag ctggaatctg aggtcaacga ataatgtgga gggatcatct
      721 gacgtatcga atggatcagg gccataagag gtgtagagat tggatactgc gaggccatcg
      781 cctcctgatt cgaaatctat tgttgtggca ccattagcat ccaaggtcac attgccatag
      841 attgattgtc ttggatcatt gagatcacct gccaaagcga gttggattgt ccgaatatca
      901 ttccaaccat ttccatcctg aatacgaagc cgggcagtgt actgaatccc agggtggagg
      961 ggggtctcat cgtcgtgacc aataatagta ctattctctg atatcaatcg gggctcaaac
     1021 tcctcgcgag taatgtaaga cgtcaaatct tccgtccagt cggatacacc tgaacgatcc
     1081 ttgttacacg gtgacggtgg ctccgggcaa actgcatctc ccccaagtgc aatggagttc
     1141 ccgctagtgt cttgtccagt aacgtagatc gatacacgct ctttgtgaac attccaagaa
     1201 tcatctatga ttccattgaa tatgttgatc ccacctgcct gtatctccgg cgaacggaac
     1261 aacatctgag aatactcgga tggatcgggg accttgttgt agttcaggtc agattgattc
     1321 tcaatccaat agtgaacggt aatctcctca ggaggatcca ctgaatcctg aatcgtgatt
     1381 gaaatcggtt gactccccgc atgcatctca gaaccttcgg atggcgtcgc accgatgacc
     1441 aatggactga caccatcgag taccaacttc acagtgttct ggtttgagtt gacataagtc
     1501 gaaccattct gcatcaagaa ggtttcaact tggaatagca tccctcctgg tgacgactgg
     1561 aagggtgtct ggaatgacat tgaatagaga ccataggaag gatttgtctg attcacaaag
     1621 gacttcctct cctcaagtgg ttggccatca agtgtcaagt tctgacctac tacgcgcata
     1681 ccaaactcac ccggctttgg atatcgagca gtatcctcga aggcgatagt gccggagaac
     1741 gtggcattac gcccaccacg catccagtca gagggaagaa gcaccctacc ctcctcgtcg
     1801 gtgacctcaa gatcgccaag aacaatatca ttctcgatac gcaggttgag atcagttgtc
     1861 tcatacccat cgaccgcgag ccctaaatca tcttcaagat cgacgcgaac ctcaacacct
     1921 gactcatcgt cccaagccca attaggcata attgggaggc gaattgaggt gataccccct
     1981 acctcctgcg aggagcagtt ggctgcgtca aaagaaacaa gccccgaagg atcgttcgaa
     2041 atcgaacaaa cattcccgga ctcccatgtc agccgtggcg tcgaaccctg tgtggagagg
     2101 agatcgacgt cgagacgtag gagtgaggtc gcaacatctc cagaagcagc acgaacaatc
     2161 agattgcggt gttcaccatc tggaacaatc gtcccaccct ccatcgtcgc ttcgataaca
     2221 cgagacatgt agcgatatgt gatgtcaaga ttactcaaca tcacacgacc cgctgaaccc
     2281 gcgtggatgg cgaatatgat gtccgtccca ccatccccat tctggacagc gtgagtattg
     2341 agagccgaaa caatcgcctg attgctcgcg actaaggggt cagtcaatac tccaacatgc
     2401 gtatactcca tgtctccatc attaccgata tccaagcgaa cgcttgctgg ccagccttcc
     2461 tcataattga ttacgagatt ctgaattacg ggtgtgaccg tggaatcagt agtcgtcatc
     2521 agagtccggt acttcagacg gtttcctgat ccgtcaaagg tactattgtc aaactgcacc
     2581 tcgacattgt tctggactgt tagccaatta gtgccattat ccgctgaaac atggacctcc
     2641 accgaggttc cagttggctc atccgagagc caagttgcac ggatacgacc aatctcagtc
     2701 ccagtttgaa ccagtttact ggaccagtcg cctgaggact catacgctgt cgagtattgg
     2761 acttgagacc accatgcgac tgctgttgac ccaacaagtt gtagcttcca tcggagaacc
     2821 tccccggtgt gagtgaaatg agttgtctga ttgtttgtaa cctgttccca atgagtcccg
     2881 ttgtcagccg aaacccaata atcgactcga tcgccagcgg ctgtcgcact ccatgacacc
     2941 tccatgttag cagaaagaat ggtctcgcct acatccatcg gtagactaac ccatgaagag
     3001 gtccctggca ttggtgtaat ttcgtaggcc catcctgaac catactcacg atacatcgga
     3061 ctagtagacc aagcatagta gtcctgagtg acgaggcgtt gaccattgta gtataatcca
     3121 tatccattcg cactgattga cgtggtgccc tgctgcttag ttaaggtaga gccaagagtt
     3181 cctgttatcg cgtaggcctc caaacggtcc tgctgccaag atgcataact acggaagtaa
     3241 acataggacc cattgactac catgccacgc ggcgtcccag atgtactgaa ataattgtag
     3301 taaagtgtcg cattacgctc aaaggttcca tcctctgcat gataagcaac cactctgttt
     3361 agcagattgt ggttgaccca aactacatcc cgagtgcgat cataagatat tccagaataa
     3421 tcgccatggt tgttcgagga tggatcatga actgcgaggc aagtccaagt tgtagggtag
     3481 cggatatcga attcaacaat tcggtgatac tgtgaagaag tagaagagta gtacgtggta
     3541 agaagaccga aagcacgttc atcatcactg atagcccagt cacgaatccc ataaccagac
     3601 caagtgaaag gcaaactagg aagagagcaa ccacttagat caagtgagat taagccgtta
     3661 ttcatcgaag agccttgaac ctgagtaccg ttgttagcat gcaagagtcg caacatcgag
     3721 ttgatattag atgcgcgaag atcagatgaa acaatccagt cacgataggt gaatgaagcg
     3781 ccggcataag tcccagcagt tgcagcactg actgatctct gctgagaaaa tctagattct
     3841 gtggcattag atgaatgggg ttgacgtatc gtgaacgaag aattgtctga ccaagcggaa
     3901 gagacagagg tggtcgtcat tgaatccaga ccataaccat cgaactccat gtccggagaa
     3961 gtcataccca aagcaaggtc atctgctctc ggatcaacac cgtttgatgt tccttctgcc
     4021 cagtctgcac gattctgtga aataacctgg ttccaacctg tagatgatgc accggaaagt
     4081 gtgacctctg catcgaggac ctctgcacca ttgggcaaag tcaccatgat attgcgtgca
     4141 ggggagcccg gagatgcaag agcaatcgtg ctcgtactgc catcagagaa ggtgtagatg
     4201 tgacgagcag caggatctgc actaacctct gtcgtggacc ctaacagggg taccatcgat
     4261 gcgagaacaa aaagacagac gaggccaatg gcgcttatgc gcccccggcc aacactccat
     4321 ccagcgttcc cactcatgct actcgatgag cctcatgcaa cttgaatatc accatgccag
     4381 gacagtcatg tcgttgcacg atcgtcgtat ctgatagggg aaccaccgtt accccgaatg
     4441 ccatcgagaa gatcatcctc aatctcgaag tgatcattca accaatcgcc atccgtatca
     4501 tagttgaacg gatgagtacc gtccgctact tggtctccgt cgatatccaa gagataccat
     4561 ccccaaacaa actccccatt acccagattg gggagatggt tctcatcacc aaaggttcga
     4621 ttccaagggt cagtccactc tccaaataca agcttgatgt tgtcctcgta ggtctgctcc
     4681 atgtaatctg gatcattatc caacacaata tgagcataga gttgatcggt tgtattgacc
     4741 ttattcatcc gcatgtaatt tgtattgact ggattctgca gacagaagcc caaaagatac
     4801 tctctgaact gccaccattc ctcgatagga gaaccatcac aatcaagcag aggagtctga
     4861 cggactagag ccgcattcga gagactgacg ttagtaattc caaagaattc ctggaaatta
     4921 ttgtaacgaa tatacacgca tactgcgcca ctacagtccc accctccatc attatcgggg
     4981 tcatccattg catcatttgg attagtcgga tccatactaa cccaagtcca atccaaagtt
     5041 ggcctctgaa ttgattgatc accttgggaa tctgtagaca ctgtcaatgg tttccaattg
     5101 tcttgaccta tctcttgcca gattacacta acctgttgat atgaagacca gttactgtta
     5161 gtttcattcc aaccatgagc atactcatac caatctggta gcatgtcgcc atctgtatca
     5221 ttgtctattg gattactacc atacttgaac acctcacgac catccgagaa attaccatca
     5281 aagtcgtaga tttggtttcc atcgacgtcc atgaagatac gacgacggtc gtccccatca
     5341 gaatccgaga ggattggatt tgtctgatta cggtattcca tcgcattagt gaaccagagg
     5401 taggagttac cgggagacat ctggtcctcg accggcccct cggtgaatac acggccctgc
     5461 catgaaccct gtgcggcaac tggctttgta ctatctcggt caaaccaacc atcttcatct
     5521 gcatcataat caacatcgag aggattgact ggattcgtcg tccacctgta gtcattagca
     5581 ggcatagtgt ttcggtaaag cgcgtaacag aattcccaac cgtcaggtaa accgtcacca
     5641 tctgagtccg gatgagttgg gtccgagatt cccagaagac tgagattgaa attatccgca
     5701 taagcagtgt tgattctctg aacacgttca gacgatttga tgtcctttga aacaaaggca
     5761 ttgtagagag cctgagtagc ctgttcctct gtcatccccc cttcctgcac catcgcatca
     5821 agcgcatcct ggccgaaggt tctcaacgtg acaccagcat cgatattgtt gatttctgag
     5881 aacttcccgt agctgcgaga ttcatactca cgcaggttgg taaatcgttc ctcatcatcg
     5941 attccaccgt tgccattaca atcgtaagaa tcctcatctg agtccgcatc aatatccgta
     6001 ccagtcaagg gattcatact ccaaatatta gcatcaaggt cccactcggt aaaccaatac
     6061 tcatacccat ccaacatacc atcatcatcg gtgtcaggat cgttggggtc agtaatcccc
     6121 agtaaggtcg cgagaagagg tggtgcgaat ccactagtct gccaatcatt atattgcgat
     6181 attgcgattg atgcgcgacc ttccttacta aacaaaatcc gataaattcg actcgtggct
     6241 tcatttggat caacaatagc tgcctcttcc cacatcttgg gagcatcggg tggagcaagc
     6301 cctccattaa cagggttgga acgagtaagg ttcagttcct ctaaatccgt tacagcatcc
     6361 tgatctccgt cgtacccccc atctcctgcg acaagaggat tcaatgtcca ctcctcgttt
     6421 gtctcattcc aagcggtgaa caggagttcg atgccatcaa gaaggccatc gccatctgta
     6481 tccgcattat tcggatccgt tgttggcccg gtaaggttgt actgttcatc agacatgaac
     6541 gaaccaaagg agagattccc gcccgcacta ctccaagcct gaggagtagt cacagacggt
     6601 gtaactagga ggtaaaactg tggagaggat acaatagtac taacctcgtt atcctcattt
     6661 ttgatactcg cgtactcttc ccaattggtc aaaccatcac catcggggtc acctgctgca
     6721 tcctcttcat tggcgggatt gagcgtccat tcctcactga aagaatccca tcgagagaac
     6781 catacttccc aaccatcggg cataccatcg ttatctgagt ccgatagtaa ggggtctaag
     6841 gacccctgat ctgcaggtac aggcaccata gcctgaacac catcggaaga ttgctgccca
     6901 aaggatgttg tcggaccgga ggcccaacta gaatcaaaca atgtagttac gaaaccatca
     6961 ggatgtggtc gaccatccgt actggcatta gcgaggagga ttcgatcaat aatatggtac
     7021 tccatccaat tattgagggc ctcatccggc ccaataattc catcacgatt gacatcgtat
     7081 ccatctccat ccggattatt tagtgcatca gaaccattca tggggttgat accagcatta
     7141 ctcggaatcc attgacagct gtaacgtgcc tcccaaccat caggtagccc atcgccatcc
     7201 gaatcaacat tattcggatc gactgcagtc cagttggctg ctgcctcagc agtctctcca
     7261 cgcagtggat cgccctcgag acgtatctga tcaaggataa tttgccaatt gtattcgcag
     7321 agattcgtca aaccgtcccc atcggcgtcc tcatcggcgt cggccgcatc aaaggggtcg
     7381 agagaccaat cgttaccccc agtgaagtct gcaccaatcc accggcgatt ttggatttcc
     7441 caaccgtcag gcataccatc gccatccgta tccgtattac tcggatcagt gggcaaatct
     7501 gtaccgccag aacttccggt ggaaatccag ccgttaagat acactgaggc agcagcctga
     7561 cctttagaat cgtcacagag gtaatcccca ttcaggtaat agcaggtgaa gttcgtatca
     7621 gcgtagaacc atccccagta ttctgagccg tcagaaaggc catccccatc ggtatcagta
     7681 ttgagtgggt cagtcccgtt gaatccctct gcagtagttg caatgaaccg gtactcatcg
     7741 agattggtcc aaggacggtc aacgtaattg gaagatggat caaaacggac accatcgttg
     7801 tcacggtcca agtcacggtc atatggatcg gttggatcta ggtcatacgc gaactcccaa
     7861 ccatctggca tcccatcctc gtcagaatcg ttagagagtg gatctatcgg agcgatattt
     7921 gcaaaacggc ctggattgat gcctgcatag agcttagaca cgttgttcat agtgccgaga
     7981 gcgatactct gaatcggccc tggaatccta gtatggccct cttgaatccc gaaaatcatt
     8041 gcgtgacccc cctccaggac ccaggttccg gcggctgaac ccacgatgag ctgattatcg
     8101 gcaatcaaaa tcgaacggat atcgttacct ccatcctgat cgagatctac attttccatt
     8161 cgttcacgat tgaaagcgtt gaaaggatca ttcgggccag ccactaaatc gtaagcgtga
     8221 agccctccag cagtaccaac ccagagtatc tgttggttgg taatctgccc atcttcgtca
     8281 cgaggcccat caatctcgag aacattcaca atcgcggatt tcgaggtatt gaaggggtca
     8341 gctggtcgaa caaactgttc ggctgtcaca ttatcgaata tccaataggg ctcagcaccc
     8401 ccttggagat cactagtatt ccaagcgagg agaccatggc tactacccac atagagaacc
     8461 tgtggagcgc ctgtaacgga aacatgagcg gcagagagta gacgagcacc tccaaaatcg
     8521 gaaagcttgg actccagttc aacggagcgc tctgctgaac caatttgccc ggttgtttcc
     8581 acaggaataa cccaaacctc gccatttggt ccacctccaa tcatggacat catcgaaccg
     8641 cctaaatcca atggattgag atttaaaatc gggcctattt cgacagatac gagtgaattc
     8701 acgactacga gtcctgagga atcaagggca agcgtgtgga atccaatatt tgtgcccaac
     8761 agcaaatgtt cccccgtagg atgattccag aggtacattg cgttgagatt gacacctgct
     8821 gggagttcaa atgaagtggt cagatcagca tccaaattca atactgaaac accatacctt
     8881 gtcccaagta caatctgctg acgctcatcc acactgatgg cttcgaccac atcatggtgg
     8941 aggagatccg gagaagttcc ctgatcatag atgcgaatgg gttgcaaggc aaggccatga
     9001 aggactgact tcaaacctga gcggacgcca tatccgtcgt catcatgcac cctatactcc
     9061 tgaagattgc taaatgcctc acccaatgcg attgtaccta acgatgtatc aggagtaatc
     9121 tggccatctc ggtctacgtc ccaaccatct aggtcagcat ctagaatcgc atcactactg
     9181 ttcaatggat caagcccaaa gtagacttcc cagccatcga taataccatc tccacggcga
     9241 ctttgacttt cgagttgcgc gcctgaccaa tagtgatcat ctgaatcatt gcgcaacgga
     9301 ttagttccga gccaaccgct attgagatct ctaatgccac gatctaaatc agtgcaagct
     9361 ccatcgacaa tagaacccat atctccgaag caacgaagtc cgtcaatctc agtcacccaa
     9421 tcagatgggg caccgtaatt gtactcctct gaatttgtgt aggcctcctg attttcaatg
     9481 acgccatcgc tatttacatc gaatccatca ccgcatccaa gttcatagtc agagcaacgg
     9541 tctgattcga gaagcccatc cgatggatcc agtggatcaa atacggaaca ttcccatgca
     9601 aaggacgcgt tctggaatcc aacaccctca ttcaaacaca tgtagacctc gtaaccatca
     9661 ggtaacccgt cgccatccgt atcagcaact ctcggatcga ggaactctcg aagacctgat
     9721 tcggtaagtc caggtggttt cccagtgagg gatttccgtt cactataaca tgtatccaat
     9781 gtgtagggcc aacaatattc catgagggca ctgaggccgt cccgatcatt atccgatatg
     9841 ttgtctgaac cattggtggc gtcgaggcct tttattgtga caatgtcgcc acgatacgag
     9901 acattgatca gaggagaaaa tagatcctca tggagatcag gtatcccatc tttatcctga
     9961 tcagtgacgg gtggtccttc accctcagta tctcctgggt taactgtgag aacctctgct
    10021 gatgggcgag tttgagatgc aaaggaaagc ccactaagca tcagaacaac gagaagtagg
    10081 gctgtctgtc gccttctcac tacatcacct ccggtggtcc aatgtctcag gtttctgatt
    10141 cagtgcctta tcatggtgat ggagcggtgt tcggacaagg ggcactctcc atcaacgtaa
    10201 gtgcccgaat aatccactga ttacaaggcc ttcaaccgag tcgttcaagg tcctcctatt
    10261 cgccgctctc aaggatggag attgttcacc tcggttctgg aagccgcggc aatgccgcca
    10321 tggtgcggac tgaggaaacg acaattctga ttgaatgtgg attctcaatg aggcaaatcg
    10381 aacgacgcct cgctatggta tatgctaaac ccgaagacct tgatgcaatc ctcatcaccc
    10441 accaccacgg agatcacggc aaaagtgcac gtgctgctgc aaaaaaatgg gatgtggaaa
    10501 tccatgcgaa ctttgagaca tgtgccaggc tctccctaga cccagtgaat caatgtcgag
    10561 tgtttgaatc tctagaaagg agagacctgg ggcctgacct atccatgcta cctattccaa
    10621 tacctcatga tgatgcagaa aacgtggcat tcgtcctaaa cggacctgaa ggacgcgccg
    10681 gtttcatgac tgatctcggt gagcctactg aggaactaat caagcacatg tctggatgtc
    10741 agcacatctc ggtcgaagca aactacgatg ttaaccgact atttggaaat atgaagtatc
    10801 cacagtcact gaaagaccga atccatggac gaggggggca cctgtctaat caccagactg
    10861 cgatgatgtt agaccgacta gtgcacgata atctagattc aattgtgcta tgccatcttt
    10921 cctctgagaa taatgctcca catctggctg agtcagaggt tttgtgccaa attgatgagg
    10981 atttcaaggg agagatccag atttccaagc aggatggacc agaattcaca cattggctcg
    11041 ggcagcgtgc cgcagagccc ctacgatgga cgtg
//
LOCUS       DUKB01000102            7197 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_104380, whole genome shotgun sequence.
ACCESSION   DUKB01000102 DUKB01000000
VERSION     DUKB01000102.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7197)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7197)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7197
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_104380"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1172
                     /locus_tag="HA345_03515"
     CDS             <1..1172
                     /locus_tag="HA345_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84460.1"
                     /translation="NDGLADGEEVVAGEDQYITHANNSDTDDDGLNDGAETLFVPRPW
                     QDQTNPKNNDTDGDGQPDGWEMQVTSTMDNKKTHSLWIAPSNWLPPGCDVMNECGKGP
                     GGWLWDNFRSGFQSGADKNGDGEPDPKYFISEMNLTGFTIPDSGRWALDPSESALPDR
                     LYDIDNDSLVNTQEIPDRWDTNPVNDDSDGDRLPDGWETRATEAALNEGLVDNGTLEI
                     IGARGPLDPRMPDSDLDGIMDGDEDFDSDGLNRTALLNRYCPPWDGSSGVCHIDPLTP
                     SGAVFYDDLTNYTNYEEYENGTYAVYNDSDMCGDDRCPDGLLDGYEVFHKDSDGDTMW
                     DGWEYFFNFDPFDPSDANIDSDGDGISNRCECDYNSNPKSGNSFPGQGEICDDFA"
     gene            1231..2763
                     /locus_tag="HA345_03520"
     CDS             1231..2763
                     /locus_tag="HA345_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84461.1"
                     /translation="MIWVPLIALLLLSNPSYSLKDSQESYHSPELDLIQIEGGNVQIF
                     ESSSDLRFDVGYIDSENVEIRWMIKDEGVTRYDGQSEFQSETNEWDSIPIHHHVISPC
                     RCVLIIDVMVEEERIHREFGIIRAGEIALPNSSEKWVIVPKNPVSSIDQQIVDITYIQ
                     DGASSDFDVRWGIQSSKASESGCLDGLHNPPSVEQWIVVENNFNSTEFSIVQDLSSFG
                     DGWWTILVQMGLDGNWSTWIGCTDIRLDITSPSVELSAPSKVPESSVPVVIDASSSSD
                     TFWGREGLRYIWTLTEINSSNVARTSVGGDDGLFNLSAEDSGIFVVNLTIVDQVGHTN
                     STSVTIDIVNQRPNSALRIDGVPTDDGETIRLSDKDGWSIDAYYSTDTSNDVASLDYV
                     WYLDGVPILSGIERTLERPEDDSVQHTLMLVVTDDNGEIDSSSVMFGVIDTPSDPEAQ
                     GSSMVILTGILVSIIFILFAAYLMMFMRQDRVPVVRPWDFESKKELESEATSSRTESE
                     SK"
     gene            2765..4081
                     /locus_tag="HA345_03525"
     CDS             2765..4081
                     /locus_tag="HA345_03525"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012766.1,HMM:NF017046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HIH84462.1"
                     /translation="MGTPDDVYVRRQSTLMDSFDDQSIAIFPTNSSMTRSRDVHYPFR
                     ASSDMLYLTGCEQEECTLVITKVEGVISSTLFVQPNDTLQEIWTGRRPGIEGSRSLPV
                     DTVDSNENLLDFLNKMKDSINSIAYVMGEKKDLDKWVQDAVYTETRARQKSGIGPKRI
                     TDPRPYLSELRLRKDSHELESMQKAADIAVKAHIEAMEKATPDMNECEFQGIIEGAFL
                     THGSHWSYPSIVAGGDNATILHYHANDAVLKDGDLLLIDAGCEVDGYASDVTRTFPVS
                     GHFTEPQREIYQTVLDAQRAAIAACKVGEQVTAPNDAARRVLSEHLIRLGVIDGAMDE
                     PTGPDGVGLWFMHGIGHWLGLDVHDVGIYSIDSSSRVFEPGMVITIEPGLYFASWRTD
                     VHVPERYAGIGVRIEDDILITNDGPVNLTEACPVEIDDIEALMNGD"
     gene            4085..5251
                     /locus_tag="HA345_03530"
     CDS             4085..5251
                     /locus_tag="HA345_03530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CofH family radical SAM protein"
                     /protein_id="HIH84463.1"
                     /translation="MWNSILDSVITPDGEHARITVEDANFLYENAPLEALMKVARNVR
                     RIHNPNEIITYLVDRNVNYTNICTINCQFCSFYRPPGHKEVYTQSIDQISARISELEA
                     IGGSRVLMQGGVNPELGMEYYTDLLQALVQRHPKIALDCFSPIEIEGIADVTGLETKE
                     VLRQLKEAGLHGLPGGGAEMLVDDVRLNISPKKGSAENWLRVMSEAQDLKLTTSATNV
                     FGFGEEPRHRVEHMERVRTLQDESIQRNGDGFTSFISWPVQLENNSFGRRNRGANRLE
                     LGAGPMEYLRQVAVSRIFFDNIVHIQASWPTMGLDVAQIAIDAGADDIGSTMMEENVV
                     SASGTTKVLASESELQRTILRSGHQPKKRDSDYNLLITTIPDFEPMPTPVPVKP"
     gene            complement(5241..>7197)
                     /locus_tag="HA345_03535"
     CDS             complement(5241..>7197)
                     /locus_tag="HA345_03535"
                     /inference="COORDINATES: protein motif:HMM:NF020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84464.1"
                     /translation="EDTDDDNDTIPDVIDLCEFTTLGSLTTDLDGCDDDQRDSDGDLI
                     VDSQDVCPGTPPEFTMYVNAEGCADIDGDGIFSNVDSCPDSPERWTIDSDGCAITQKP
                     IQWSSGPYSASAFGTVADFSFPTTTGSYSIRNEWTGNHTHLFIFNYKSSSYMTNLWSQ
                     DVGVFLAGVPDNTIVTFGSFDSDYSSDIQGMENRVQNWLGNQDEAVRDSWNGRIHYMD
                     QRASSSSGSLGQIINEWSAFYYGIDRFQRWRQIGSLLDWSQGVSCCYRLHYIANEPQM
                     WNSEFTTQLRPEDPGITTVDVWAGERHSGGWGAGYSSYMNATLPEGITMELFDTLEVH
                     HEHRCTDRRDRYGIDDDGDGSTDRYGGCHEWDRLQRVSLCDNTTSNSCGTEVVRYITT
                     YGREGQWTTDISPYLFMFLEGGDRRFKYSGAEGGNLVITLMFSSWDEDDSRPVRGELA
                     FNIDGTKFNSNYNNESTSDRRHDVDTNTWHSVSIVAAITGHGFGQDPNNCAEFCNHEH
                     RYSMNGYDVTEDHPMAGNSSVNSDQQGCRKTTGEGTVANQFGSWPYGRAGWCAGLDVK
                     LWSHDITHWINPTGTNELFYQGLFDGAQYQETSTNPYIVGTVWIVYEHNTTNQNSGAF
                     NSVDSSVENRGMITANPDLTDYAALRA"
BASE COUNT         2008 a         1501 c         1670 g         2018 t
ORIGIN      
        1 ataacgacgg actagcagat ggtgaggagg ttgttgctgg agaagatcaa tacatcaccc
       61 atgcaaacaa ctcagatacg gatgatgatg gtttgaatga tggcgctgag acattatttg
      121 tacctcgccc atggcaagat cagactaatc ctaagaacaa cgatactgat ggtgatggac
      181 aaccagatgg ctgggaaatg caagttacga gtactatgga caacaaaaag acacactcac
      241 tttggattgc tccttcaaat tggctcccgc caggttgcga tgttatgaat gaatgtggca
      301 agggccctgg tggctggcta tgggataact tccgctcagg attccagtca ggagctgata
      361 aaaatggtga tggtgaacct gatcctaagt acttcatcag tgagatgaat cttactggat
      421 tcaccatccc tgattcaggc cgttgggcat tagaccctag tgagtcggct ttacctgacc
      481 gcttatatga tattgacaat gattcactcg ttaacacgca ggagattcca gatcgttggg
      541 atactaatcc tgtgaatgat gattcagatg gtgaccgcct tcctgatggc tgggaaactc
      601 gggcaacaga agctgcattg aacgagggtt tggtagacaa tggtacactc gaaattattg
      661 gcgcccgtgg ccctctagat ccgcgtatgc cagattcaga tttagatggg atcatggacg
      721 gtgacgagga ctttgattcc gatggattaa accgtaccgc actgctaaat cgatactgcc
      781 ctccatggga cggatcatct ggtgtatgcc atatcgatcc attgacaccc tctggtgctg
      841 tattctatga tgatttgacg aactacacca actatgagga atacgagaat ggcacctatg
      901 cagtctacaa cgattccgat atgtgtggcg atgatcgttg ccctgatggt cttctcgatg
      961 ggtatgaagt attccacaag gatagcgatg gtgacacaat gtgggatggt tgggagtatt
     1021 tcttcaattt cgatccattc gatcctagcg atgctaacat cgatagtgat ggagatggaa
     1081 tttctaaccg ttgtgaatgt gattataatt ccaatcctaa atctggtaac tcgttccctg
     1141 gccagggtga gatttgcgat gatttcgctt gatttcacgc gattagtcaa agcgttcttc
     1201 cctatctgat gaccatcgag tcatatgaga gtgatttggg tacccctaat tgctctctta
     1261 ctattgtcta atccctctta ttctctcaag gatagccaag aatcgtatca ttctccagaa
     1321 ctcgacttga tacagataga aggggggaat gttcagattt tcgaatcgtc ctcagatcta
     1381 agattcgatg taggatatat tgattcagaa aatgtagaga tacgttggat gattaaggac
     1441 gaaggagtca cacgttatga tggtcaatca gagttccaat cagaaactaa cgaatgggat
     1501 agtattccaa tccatcacca tgtaatctca ccttgtcgct gtgttttgat cattgacgtc
     1561 atggttgaag aagaacgtat ccaccgtgaa ttcgggatta ttagagcagg cgaaatcgca
     1621 ctccctaatt cttcagaaaa atgggtcatc gtgccaaaga atccggtatc atctatcgac
     1681 caacagattg ttgatattac ctatattcag gatggcgcat cgtcggattt tgatgttagg
     1741 tggggtattc aatccagtaa agctagtgaa tcgggttgct tagatgggtt acacaaccca
     1801 ccttcagttg aacagtggat tgttgtggag aataatttca attctactga atttagtatt
     1861 gttcaagatc tttcttcctt tggagatggt tggtggacaa ttcttgttca aatgggtcta
     1921 gatggaaatt ggtcgacatg gatcggatgt accgacattc gattggatat tacttctcca
     1981 tcggtcgaat tatctgctcc aagtaaggtt ccagaatcat cggtccctgt tgtaatcgac
     2041 gctagttcat cgagtgatac attctggggg agggaaggtc ttcgatatat ttggacttta
     2101 acagagatta attcatccaa tgtagcaaga acaagtgttg gtggagacga tggcttgttt
     2161 aatctctctg cagaggattc gggaatattc gtggttaacc taactatcgt agaccaagtt
     2221 ggccatacta attctacgag tgtcactatt gatattgtca atcagcggcc taattctgct
     2281 cttcggattg atggtgttcc aacagatgat ggtgagacaa tacggctctc ggataaggat
     2341 ggatggtcta ttgatgcata ttattcaact gatacgtcaa atgatgtcgc aagtttagat
     2401 tatgtatggt atctcgatgg tgtgccaatt ctatcaggaa tcgaacgaac ccttgaacga
     2461 ccagaggatg attcagtaca gcatacacta atgcttgttg taactgatga taatggggaa
     2521 atagacagca gttccgtaat gtttggcgtg attgatacac ccagtgatcc tgaggctcag
     2581 ggctcctcta tggttatcct tacagggata cttgtatcaa tcatattcat tctgtttgca
     2641 gcctatctaa tgatgttcat gagacaggat cgtgttcctg ttgtcagacc atgggatttt
     2701 gaatccaaaa aagagcttga gagtgaagcc acatcctcaa gaacagaatc ggagtcgaaa
     2761 tgacatgggc acgccagacg acgtctacgt acggcgccaa tccaccttga tggattcctt
     2821 tgatgatcag agtattgcca tctttccaac caactcaagt atgacccgtt cccgagacgt
     2881 gcattatcca ttcagagcaa gctccgatat gctctatctt actggttgtg aacaagagga
     2941 atgcacccta gtgatcacca aagtagaggg cgttatttca tcgacattat ttgtccagcc
     3001 taatgataca ctccaagaga tatggactgg acggcgccct ggaatcgaag gatctcgctc
     3061 acttcctgta gatacagttg attcgaatga gaatctctta gattttctaa acaaaatgaa
     3121 ggattcgatt aattccattg cttacgtaat gggtgagaaa aaagatctgg ataaatgggt
     3181 tcaggatgca gtgtatactg aaacaagagc gcgtcagaag tcaggtattg gtccaaagag
     3241 aatcactgat ccacgtccgt atttgtctga attgaggctt cgaaaggatt ctcacgagtt
     3301 ggaatctatg caaaaagctg cagacatagc agtcaaagcc catatcgaag cgatggaaaa
     3361 agcaacaccg gatatgaatg aatgtgaatt tcaagggata atcgagggtg ctttcctcac
     3421 acatggatct cattggtcct atccaagtat cgtagcagga ggagataacg caactatcct
     3481 tcattatcat gcaaacgatg ctgtgttgaa ggatggagac cttctactca ttgatgccgg
     3541 atgtgaagtt gatggatatg cgtctgatgt cactcggaca ttccctgtaa gtggtcattt
     3601 cactgaaccc cagcgagaga tataccagac agtattagat gctcagagag cagcaatcgc
     3661 agcatgtaag gttggagaac aagtaactgc ccccaatgat gctgctcgaa gggtcttgtc
     3721 agaacatctc attcgattgg gtgttattga tggagcaatg gatgaaccta ctggaccgga
     3781 tggagtcgga ctttggttca tgcatggcat aggtcattgg cttggtttag atgtacatga
     3841 tgttggtata tacagcatcg atagcagttc tagagtgttt gaaccgggaa tggtcatcac
     3901 aatagaacca ggcctctatt ttgcatcttg gagaacggat gtgcatgtac cagagcgtta
     3961 cgctggcatt ggtgttcgta ttgaggatga tatcctaatc acgaacgatg ggcctgtgaa
     4021 tctaacagaa gcatgtcctg tggaaattga tgatatcgag gctctgatga atggggattg
     4081 atccatgtgg aattctattc ttgatagtgt catcacacct gatggagagc atgctagaat
     4141 aactgttgaa gatgcaaatt ttctgtacga aaatgcacct cttgaagccc tgatgaaggt
     4201 tgcacggaat gttcgacgca ttcacaatcc taacgagata atcacctatc tagttgacag
     4261 gaatgtgaat tacactaata tctgtacaat aaattgccaa ttctgctctt tctacagacc
     4321 tcctggacac aaggaggtct acactcaatc aattgaccag atttctgcaa ggattagtga
     4381 actggaagca ataggtggaa gccgagtcct gatgcagggt ggtgtcaacc cagaattagg
     4441 aatggaatat tacacagatc tcctccaagc attagttcag aggcatccaa agattgctct
     4501 ggattgcttc agtcccatcg aaattgaggg tattgcagat gtaactggat tggagacaaa
     4561 agaagtattg cgccaactca aggaggctgg actccatggt cttccaggtg ggggtgcaga
     4621 gatgctcgta gatgatgttc ggttgaatat ttcaccaaag aaggggagtg cagagaattg
     4681 gttgagagtc atgtctgaag ctcaagacct caaacttact acttcagcaa ccaatgtttt
     4741 cggcttcggg gaagaaccga gacacagagt ggaacatatg gaaagagtta gaactctaca
     4801 agatgaatca attcaacgaa atggagatgg cttcacttcc ttcatttcat ggccagtaca
     4861 gttggaaaac aactcttttg ggcgacgtaa cagaggtgct aatcgacttg agttaggagc
     4921 aggtcctatg gaatatcttc gtcaagttgc agttagcagg atattcttcg acaatattgt
     4981 ccatattcaa gcatcttggc caacaatggg actcgatgtg gctcaaattg ccattgatgc
     5041 tggtgccgac gacattggat caactatgat ggaagaaaat gttgtatcag cgtcaggcac
     5101 tacgaaagta cttgcaagtg aatcagaact acagagaaca attctccgtt ctgggcatca
     5161 gcccaagaaa cgagatagtg attacaatct acttattacg acgattccag attttgaacc
     5221 aatgcctaca cctgtgccag ttaagcccta agtgcagcat aatccgtcag atcgggattt
     5281 gcagtaatca ttcctcgatt ttctactgat gaatcgactg aattgaaggc cccagaattt
     5341 tgattcgtcg tgttgtgctc atagactatc catactgtgc ccacaatgta tggattggtt
     5401 gaagtctctt gatactgtgc accatcaaag agtccctgat agaaaagttc gttcgtacca
     5461 gttggattga tccaatgagt gatgtcgtgg ctccacaatt taacatcgag gcctgcacac
     5521 catcccgcac gaccatatgg ccaacttccg aattggtttg ctacagtacc ttcaccagtt
     5581 gtttttcgac acccttgttg atccgaattc acacttgagt ttcctgccat agggtgatcc
     5641 tcagtcacat catatccatt cattgaatat cggtgttcat gattacagaa ttctgcacaa
     5701 ttgttaggat cttgtccgaa tccatggcct gtaattgctg caactatact taccgaatgc
     5761 catgtattag tgtcaacatc atgtcgccta tcagaagttg attcattgtt gtagtttgaa
     5821 ttgaattttg ttccatcaat gttgaatgct aactcacctc tgacagggcg tgaatcatct
     5881 tcatcccatg acgagaacat tagagtaatt acaagattcc ctccttcagc tcctgaatac
     5941 ttgaatcgac gatctccacc ttcaaggaac atgaataggt atggcgagat atcagttgtc
     6001 cattggcctt cacggccata cgttgtgata tatcggacta cttcagtccc acaggagttt
     6061 gaggttgtgt tgtcacatag acttactctc tgaagacggt cccattcgtg acaccctcca
     6121 tatcgatcag tagagccatc tccatcgtca tcaatgccat agcgatcacg tcggtcagta
     6181 caacgatgct cgtgatggac ttccagagta tcgaaaagtt ccatcgtgat gccctcaggt
     6241 aatgtggcat tcatgtatga cgaatatcct gctccccaac ctcctgagtg ccgttctcct
     6301 gcccacacat ctactgttgt aatgcctgga tcttcaggac ggagttgggt tgtgaattcc
     6361 gagttccaca tctgcggttc attagcgatg tagtgtaatc tgtagcaaca ggatactcct
     6421 tggctccaat ctagtagact accaatttgg cgccaacgct gaaatcggtc tattccatag
     6481 tagaatgcgc tccattcgtt gattatctgc cctaggctac ctgaggatga agacgctctt
     6541 tgatccatgt agtgaattcg cccattccaa gaatcacgga ctgcttcgtc ctgattacct
     6601 agccaattct gaacacgatt ttccatacct tgaatatctg atgaataatc actatcaaag
     6661 gacccgaatg taacgattgt attgtcaggg acgcctgcca gaaatacacc aacatcttga
     6721 ctccagagat tcgtcatgta ggagcttgat ttgtagttga aaatgaagag gtgagtgtgg
     6781 ttcccggtcc attcatttcg aatagaatag gatcctgtgg tggttggaaa actgaaatca
     6841 gcaacagtac cgaaagcaga ggctgaataa ggcccactag accactgaat cggtttttga
     6901 gtaatagcac aaccatcact atcgatagtc caacgttctg gggaatccgg gcaagaatcg
     6961 acatttgaga aaataccatc tccatcgata tccgcacatc cttccgcatt aacatacata
     7021 gtgaattctg gaggagtgcc tggacaaacg tcctgagaat ctacaattaa atccccgtca
     7081 gaatctcttt gatcatcgtc gcaaccgtct aaatcagttg ttagagatcc taatgtggta
     7141 aattcgcata gatcgattac atcggggatt gtatcattat catcatcggt gtcttca
//
LOCUS       DUKB01000103            8020 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_110010, whole genome shotgun sequence.
ACCESSION   DUKB01000103 DUKB01000000
VERSION     DUKB01000103.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8020)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8020)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8020
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_110010"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="HA345_03540"
     CDS             <1..949
                     /locus_tag="HA345_03540"
                     /inference="COORDINATES: protein motif:HMM:NF012488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HIH84465.1"
                     /translation="NLVAYGWARANLGKGDVVLTTEMEHHADIVPWQILSKECGIEIR
                     YVPLDRETMTLDMEAFEIAVEDASLVCVVHTSNVLGVRNDVERIIQLAKSRGKGGKGA
                     HVMLDAAQAAPHERIDFPELGCDFLALSAHKMGGPTGIGALFTTTDTMETMKPFISGG
                     DMIETVTLEGSTYQKGPHKFEAGTPRIAEAFGWHAAVQWLDRHNMEDVHAHISSLARW
                     TAKQMRDIPGIRIYGRHDLETTSGVVSFLHEKIHAEDLAHLMDAGGFAVRTGHHCAQP
                     LMEALGVSSTARASFWIYNTMEEAEAFVNHLRGVVERFS"
     gene            962..1393
                     /locus_tag="HA345_03545"
     CDS             962..1393
                     /locus_tag="HA345_03545"
                     /inference="COORDINATES: protein motif:HMM:NF014688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HIH84466.1"
                     /translation="MSKWPVALQEIIEDFQDCFDRMERYELLFEYAKRMPHPLPNEEW
                     TDGNRVKGCQSEAHVECIIDADTGFHIRGGADAQLVQGLMAVLAIGVDGLSPSEVAQL
                     TPKFVDEMNVKASLTPSRANGFLNLFEIIRSEAEKYTNQPQ"
     gene            1438..1731
                     /locus_tag="HA345_03550"
     CDS             1438..1731
                     /locus_tag="HA345_03550"
                     /inference="COORDINATES: protein motif:HMM:NF013999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HIH84467.1"
                     /translation="MGSLRPVEDPEMKIGVVDLGLVYGVRIEEKDDGPHAEIDLTLTS
                     PGCPAAPEIMAAVHRAALTTEGIGSVHVNLVWSPRWDPRVHASEDAQFELGIF"
     gene            complement(1732..2736)
                     /locus_tag="HA345_03555"
     CDS             complement(1732..2736)
                     /locus_tag="HA345_03555"
                     /inference="COORDINATES: protein motif:HMM:NF012600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84468.1"
                     /translation="MGPENEQKKSSTKRSSRGGDFVASPRPSQKQRRTDSQSRPCELC
                     GANEWDTDVQRGEITCNVCGFVAEQNMIDPGAEWVNHSDGADRSRVGAPTTVSLSDKG
                     LSTIIDKRDLSSGIAKRNGMNSRQVRDWRRRATIDHRSKTRDSRSRNLAKAMQFIRDR
                     GDLSPQLRDQASSLYRKAVEKGLVTGRSIRGVTAACVYLATREAKIPRRIEEVGERFD
                     MTSDTELKELKRTIRLVARELGAHHISGPVEYLDKFHSDLQLPPKALGRAHEIWDATK
                     HDLAWQGKKPSGIAGVLLYRAAADVGSNRTQSEVCKVCGVSEVTLRGLLKILNSRVSA
                     "
     gene            2872..3603
                     /locus_tag="HA345_03560"
     CDS             2872..3603
                     /locus_tag="HA345_03560"
                     /inference="COORDINATES: protein motif:HMM:NF012955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84469.1"
                     /translation="MDVIRLPGIHHDTSMTILTDDCEAILIDTGTSWHQVNTEERMRS
                     KIQHGNLAAILLTHRHYDTAGAAAYLSDTFDCTIHAHGDALNPLASNDQLTTWASRFD
                     SDMPPTSAHALEDRWRRNMGDHVIEAIHTPGHTSCHTSFLLDELGILIAGDLFPAATT
                     PGRTDLPTGNIVQMRDSIQHVRDLDIDTLIPSRGETIRGDTIEDVLTQHLDFFDSMIE
                     AKGDLPEKWPVPVPTCMWWTPEPEW"
     gene            complement(3605..4135)
                     /locus_tag="HA345_03565"
     CDS             complement(3605..4135)
                     /locus_tag="HA345_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84470.1"
                     /translation="MSMAYTSIPFRRGYLSGRKKRRANITIDDWNLHDLDLDSKPTSL
                     AKITDSKNRVLRLVIGCENGNVAIVSWPKGNILAQWSSGIDSVTAIHISQTHDNQNIQ
                     PISAYLGTDSGRILSVEGSLLHPKFIRNLGDIEVCCDGLRFIEGGLLAKSGWRTIRIP
                     LESSGGRRQIQAIFAV"
     gene            complement(4201..4470)
                     /locus_tag="HA345_03570"
     CDS             complement(4201..4470)
                     /locus_tag="HA345_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84471.1"
                     /translation="MGFKKRARVNRKPKEEAKDDGGDEGEIPCDVADCDKWADKKFGG
                     RSIAIDNAIDVWGEDGLKRDARRVRICRPCYREWKKAKKDEPDQY"
     gene            complement(4512..5816)
                     /locus_tag="HA345_03575"
     CDS             complement(4512..5816)
                     /locus_tag="HA345_03575"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HIH84472.1"
                     /translation="MPATIVLGAQWGDEGKGKLVDQLASEADWVVRFQGGSNAGHTIV
                     IGERKLAFHHLPSGITYSHCNLVLGAGMVIDPWKLEDELDRWFEFGGERPEGERLFIS
                     ERAHVTLPYHRILDGADKEIGTTGRGIGPTYGDAIERVGIRFVDISNVLSDGGRIEQI
                     VNRMNGRLSAAGLDSSITVDTLRADLEWISDRFGAAVRPTGLLVHHALERGENILLEG
                     AQGALLDIAQGTYPFVTSSVTSRANATHGAGIHPGHVERTIGVVKAYTTRVGHGPFPA
                     ELHDEVGNHLGTVGHEFGTTTGRPRRCGWLDIVPLRHAMRINGFDEVVLTKLDVLGGL
                     EKLEIVVGYRVDGAEIHEFPADLSMLERAEPVTLTLPGFESLDLGDWLKVAREAQATG
                     RGYDVLPEAAQTYIQTVEQLLGVPVSSVGVGPDREASIERRA"
     gene            5921..6073
                     /gene="rpl40e"
                     /locus_tag="HA345_03580"
     CDS             5921..6073
                     /gene="rpl40e"
                     /locus_tag="HA345_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010878927.1"
                     /note="contains a zinc-finger motif; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L40e"
                     /protein_id="HIH84473.1"
                     /translation="MARFPEAEKRNLHKWVCMRCSATHRGRKPRPCRKCGYKGLRPKI
                     VEKKQR"
     gene            complement(6079..6810)
                     /locus_tag="HA345_03585"
     CDS             complement(6079..6810)
                     /locus_tag="HA345_03585"
                     /inference="COORDINATES: protein motif:HMM:NF024811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HIH84474.1"
                     /translation="MSVETGSSGRRPAPLIFDLDHTLWDFATNSKKSLIEGFKHFRLD
                     LLGIESDEQWINAFEVANDRCWALYRNGEIDKSTLRTERFRLTLESMGCNDDELAVSL
                     GVHYVEVSPLQTTLIEGSEALLSGLAARGHRMWVLTNGFEEVQRIKLARCGLSKFFEA
                     MYTSEQLGAKKPHAQAFLGAAQLAGLEPDEGIVMIGDSYGSDIIGAQNVGWRGVHYNP
                     QGEVHEDAWRTVRQLREILDLEMYH"
     gene            complement(6829..7104)
                     /locus_tag="HA345_03590"
     CDS             complement(6829..7104)
                     /locus_tag="HA345_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_048147166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84475.1"
                     /translation="MSDVNTRIQQIATVLEQLQDSQVPRNIRRAANEATTEWLLNERK
                     ELDIRLGMTASKLDEIYNDANLPHHYGPLCLQIQTAIEALLKEVQGH"
     gene            7188..>8020
                     /locus_tag="HA345_03595"
     CDS             7188..>8020
                     /locus_tag="HA345_03595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84476.1"
                     /translation="MEPPTPDQWTALLRCFILILCMAGAALMDHWQRRVPNEWWIRWG
                     VAIGFLLLVEVILLEADVALFLGTFGLLAWCSASVIGTPSLKDMREGSRIDILVAIWY
                     LLGIIGGGAALYLHAPNALWSLGLATDAPMFQLTDMAAIELAESRGLLLLRLIGLAVG
                     IGFIEIAWRARLLYGGADAKAMIVVALAIPWWIGIGPFGETTAVPPMVSVLIWSALAF
                     LILPFVTISRNIRTGHSGPLRMIWHAERWGLDQIPGQQVWILSDIVETADGERKIRER
                     MR"
BASE COUNT         2048 a         2128 c         1947 g         1897 t
ORIGIN      
        1 caatctcgtt gcttacggtt gggctcgagc taatctcggt aaaggagacg ttgtcctgac
       61 tactgagatg gaacaccacg ctgacatcgt cccatggcaa atcctgtcta aggaatgcgg
      121 aatcgagatt cgctacgttc ctctcgaccg tgaaacaatg acactcgaca tggaagcctt
      181 cgagattgct gttgaagacg catctctcgt gtgtgtcgtc cacacatcga atgtattggg
      241 tgtgcgaaac gatgtggagc gtattatcca actcgcaaaa tcacgtggta agggtgggaa
      301 aggggctcac gtaatgctcg atgcagcgca ggcggcacct cacgaacgta ttgatttccc
      361 tgaactagga tgcgacttcc tcgcacttag cgcccacaag atgggaggcc cgacaggcat
      421 cggtgcacta tttacaacaa ctgatacgat ggaaacgatg aagccattca tctcaggcgg
      481 agacatgatt gagacagtga ctttggaagg gtcgacttac cagaagggcc cgcataaatt
      541 tgaggctgga actccacgaa ttgcagaggc atttggttgg catgcagcag tacaatggct
      601 tgaccgacac aatatggagg atgtacatgc acatatctca tctctcgcac gttggactgc
      661 taaacaaatg agagacatac ctggaattcg aatatacggt cgacacgatc ttgagacaac
      721 tagtggagtt gtatccttcc tccatgagaa gatccatgct gaagatttag ctcatctaat
      781 ggatgcggga ggattcgctg ttcgaacggg acatcattgt gctcaaccac tgatggaggc
      841 tcttggtgta tcgagcacag cacgggcatc attctggatt tacaatacca tggaggaggc
      901 cgaagccttc gttaaccatc tccgtggagt tgtagaacga ttctcatgag aggtgatttg
      961 agtgagtaaa tggccagtag ctcttcagga gattatcgag gacttccaag attgcttcga
     1021 cagaatggaa cgatacgaac ttctatttga gtatgcgaaa cggatgccac acccactccc
     1081 caatgaggaa tggactgatg gaaatcgggt caaggggtgt caatctgaag cacatgtgga
     1141 gtgcatcata gatgcagaca ctggattcca catccgcgga ggagcagatg cgcagttagt
     1201 ccaaggactg atggctgtgc ttgcaattgg tgtagatggc ctctccccaa gtgaagttgc
     1261 tcaattgaca cctaagttcg ttgatgagat gaatgtcaaa gcgtctctga ctccatcccg
     1321 cgcgaatggt ttcctcaact tgtttgagat aatccgatcc gaagcagaga aatacactaa
     1381 ccagccacag tgaagatgaa taacggaatg agaaccatga atttagaaga agccgtgatg
     1441 ggatccctac gcccagtaga ggatcctgaa atgaaaatcg gagttgtcga tctcggccta
     1501 gtctatggtg ttcgtatcga ggagaaagac gacggcccgc atgcagaaat tgatcttacc
     1561 ctcacctcac ccgggtgtcc cgctgcgcca gagattatgg ctgctgtcca ccgtgcagcc
     1621 ctcaccactg aaggtatcgg atccgtacac gtaaacctcg tatggagtcc aagatgggac
     1681 ccaagagtcc acgcatccga agatgctcaa tttgagctcg gaatcttctg actacgcact
     1741 aacacgcgaa ttcagaattt tgagcaaacc acgtagtgtt acctcactga ctccgcagac
     1801 cttgcagacc tcactctgag tccgattaga tccaacgtca gccgcagcgc ggtaaaggag
     1861 gactccagcg ataccactag gcttcttacc ctgccatgct aggtcatgct tggttgcatc
     1921 ccaaatctca tgcgctcgtc ccaaggcctt aggtggcagt tgcaaatcac tgtggaactt
     1981 gtcaagatac tctaccggac cagaaatgtg gtgggctccg agttcacggg ctacaagacg
     2041 gatggtacgc ttcaactcct tcaactccgt atcagaagtc atatcgaaac gttcgccaac
     2101 ctcctcgata cgacgaggaa tctttgcttc acgtgttgca agatagacac aggctgctgt
     2161 tactcctcga atcgaacgac ccgtaacaag gcccttctcg actgcttttc ggtataggct
     2221 actggcctga tctcggagct ggggggaaag atcgccgcga tcacgaatga actgcatcgc
     2281 tttcgcaaga tttcgtgaac ggctatcacg tgtctttgaa cgatgatcga tagtcgcacg
     2341 acgcctccaa tcacgaacct gacgggagtt catcccattc ctctttgcaa ttccagatga
     2401 aagatcacgt ttgtcgatta tcgttgagag ccccttgtca gacagagata ctgtggttgg
     2461 tgcacctact cgagaacgat ctgctccatc actatggttt acccactctg cacctggatc
     2521 aatcatattc tgttccgcga caaaaccaca cacattgcat gtaatctcgc cacgctgaac
     2581 atcggtatcc cattcgttcg caccacaaag ttcgcaaggc cgggactggc tatcagtacg
     2641 cctctgcttc tgactcggcc gtggagatgc tacgaagtca ccaccacggc ttgagcgctt
     2701 tgtagaggat ttcttctgtt cattctccgg acccattcac accaccttct tcccaacttg
     2761 gggttgtata gttcgctacg accatatata aatgctcgct tacattgtta caccaatacg
     2821 ccccccaata cacgggatag gttgattgag aacgccatac tggagggaca cgtggatgtc
     2881 attcgccttc cgggaatcca tcacgataca tcaatgacga ttcttacaga tgattgcgaa
     2941 gcaatcctga ttgatacggg caccagttgg catcaggtca acactgagga aagaatgcga
     3001 tcaaagattc aacatggcaa tctcgcagct attctcctta cacatcgcca ctacgataca
     3061 gcaggtgctg cagcctacct ttccgatact ttcgactgca caatacatgc tcatggggat
     3121 gcactcaacc ccctagcttc gaacgaccaa ctaaccacgt gggcatctcg atttgattcg
     3181 gatatgccgc ccacttccgc gcatgcccta gaggatagat ggcgacgaaa tatgggcgac
     3241 catgttatag aagcaattca tacaccaggg catacatcat gccataccag tttcttgttg
     3301 gatgaacttg gaattctaat cgcaggagat ttattccctg cagccactac gcccggacga
     3361 acggatcttc caacaggaaa tatagtgcaa atgagggatt ccatccagca tgtgcgagat
     3421 ctcgacatcg acacactgat tccatcaagg ggtgagacaa ttcgcggaga tactatcgaa
     3481 gatgtgctaa cccaacatct cgacttcttc gattcaatga ttgaggcgaa gggggatcta
     3541 ccggagaaat ggccggtacc tgtgccaacc tgcatgtggt ggacgccaga gccagaatgg
     3601 tgagtcatac tgcgaagatt gcctgaattt gtcggcgccc ccctgaggat tccaacggaa
     3661 ttcgaatagt ccgccaacca gatttcgcca ataatccccc ctcaatgaaa cgcagaccgt
     3721 cacaacatac ctcaatgtca ccaagattgc gaatgaattt aggatggaga agtgaaccct
     3781 ctaccgatag gatacgcccg gaatcagtcc cgagatatgc tgaaatcggc tgtatattct
     3841 gattgtcatg tgtctgagaa atatgaatag cagttacgga atcaatgccc gaggaccatt
     3901 gtgctagaat attgccctta ggccaactaa caatggcaac attaccgttc tcgcatccta
     3961 tcacaaggcg caaaactcga ttcttagaat ccgtaatctt cgccaatgaa gtcggtttag
     4021 agtccaaatc caaatcgtga agattccaat cgtcaatcgt aatgttagcc cttcgcttct
     4081 tccttccaga gaggtaacct ctcctgaaag ggatgcttgt atatgccata gacatggttt
     4141 caattcaacg atgtccgcat atgaatgagg atgcgggaga gtcaactgaa agtgaaacta
     4201 tcagtactga tcgggttcgt ccttcttcgc cttcttccac tcgcggtagc aagggcggca
     4261 gattcgtact cgacgagcat cgcgcttgag cccatcttca ccccatacat caatcgcatt
     4321 gtcgatagca atggagcgcc ctccgaactt cttgtcggcc catttatcgc aatcagcaac
     4381 atcacaggga atctctccct catcgccacc atcatccttg gcctcttcct tgggcttccg
     4441 gttgacacga gcgcgcttct tgaagcccat gaaggacttg attggagggc cggagatgaa
     4501 ccttatccta ctcaagcacg acgttcgatg gacgcttcac ggtccggccc gacaccaaca
     4561 ctggacacag ggacgccgag aagttgctct acggtctgaa tgtaggtctg cgcagcctct
     4621 ggaagtacgt cataaccacg gccagttgct tgggcttcgc gagcaacctt gagccaatca
     4681 ccaaggtcaa gtgattcaaa gccaggtaat gtgagtgtta caggctcagc acgttctaac
     4741 attgagagat cagccgggaa ctcatgaatt tcagcgccat caacacgata ccctactaca
     4801 atttccaact tctctaagcc tcctaggacg tctaacttag tcagaacaac ctcatcgaat
     4861 ccattgatcc tcatcgcatg gcgaagagga actatgtcca accagccgca acggcgtggc
     4921 cggccagtgg ttgtcccgaa ttcatgacct acagttccaa gatgattgcc cacctcatcg
     4981 tgaagttcag cagggaaggg accatgtccg actcgagtgg tatatgcctt cactacaccg
     5041 attgtgcgct caacatgtcc aggatggatt cctgccccat gtgtagcatt tgctcgactc
     5101 gtgacggatg aggtcacaaa gggatatgtt ccctgcgcaa tatctaggag ggcgccttga
     5161 gcgccttcaa ggagaatatt ctcgcccctc tcaagcgcat ggtgaacaag cagaccagtc
     5221 ggcctaactg ctgccccgaa tctatcagaa atccattcaa gatctgcacg caatgtgtcc
     5281 acagtgattg aagagtccaa accagctgcc gaaagtcggc cattcatacg attaacaatc
     5341 tgctcaatac ggcccccgtc tgatagcaca ttggagatat cgacaaaacg gatgccgacg
     5401 cgctcaatgg cgtcaccgta agtcggacct attcctcgac cggtggtacc gatttctttg
     5461 tctgctccat cgaggatacg gtggtatggg agagtgacat gagcacgctc ggaaatgaag
     5521 aggcgctccc cctcgggacg ttcgcctccg aactcaaacc aacgatcaag ctcatcctct
     5581 aacttccacg gatcgattac catgcccgcg ccaaggacga ggttgcagtg gctgtaggtt
     5641 ataccactcg gcaggtgatg aaaagccaat ttacgttccc cgataacaat cgtgtgaccc
     5701 gcattggagc ccccttggaa cctaacaacc caatccgctt ctgaggccaa ctggtccact
     5761 agcttccctt tgccctcgtc tccccactga gcaccgagta caatcgtcgc aggcatagta
     5821 gagagccggc gagagaggcc tttcaactct ccttcgacac ccagagagaa gattcctccg
     5881 ttccgatgcg gttatgaagg gggcatcggt ccaccggctc atggcacgat tccctgaggc
     5941 ggagaagcgt aacctgcaca agtgggtctg catgcgctgc tcagccaccc accgtggccg
     6001 taaaccgcgc ccttgtcgca agtgtggcta caagggtctt cgacctaaga ttgttgagaa
     6061 gaagcagcgc tgattctctc aatgatacat ctcgagatct aatatctctc tgagttgacg
     6121 cacggttcgc cacgcgtcct catgaacttc cccttgcgga ttgtaatgca cacctcgcca
     6181 accaacattc tgggccccga tgatgtcact accataacta tcgccaatca tgactatgcc
     6241 ttcatctggt tcaaggccag caagttgagc agcaccaagg aaagcctgcg catgcggctt
     6301 cttcgcaccc agttgctcac tagtgtacat cgcttcaaag aatttggaca aaccgcagcg
     6361 ggcgagcttg atcctctgaa cctcctcaaa tccatttgtg agaacccaca tacgatgccc
     6421 ccttgctgca agtccggata acagtgcctc cgatccttcg atgagggtcg tctgaagagg
     6481 tgaaacctcc acatagtgca caccaagaga aactgcgagt tcatcatcat tacaacccat
     6541 agattccaat gtaagccgga aacgctccgt gcgtaatgtg gatttgtcaa tctctccatt
     6601 acgatacaat gcccaacatc ggtcgttggc tacttcaaat gcattgatcc attgctcatc
     6661 gctctcgata ccgagtaaat cgagccggaa atgcttgaat ccttcgataa gggatttctt
     6721 agaattagta gcaaaatccc acagagtatg atcaaggtcg aaaataaggg gagcaggacg
     6781 tcgaccagaa ctgcccgttt cgacggacat gtagaacgac caatcgcctc agtgaccctg
     6841 gacctctttg agaagagcct cgatagcggt ctggatctgg aggcatagtg ggccgtagtg
     6901 gtgaggaaga tttgcatcgt tgtaaatctc gtctaacttg ctggcggtca tacccaagcg
     6961 gatatcgagt tccttacgct cattgagcaa ccattcagtg gttgcttcat tggcagcacg
     7021 acgaatatta cgaggaactt ggctgtcctg caactgctca agtactgtgg caatctgttg
     7081 aatccgggta ttgacgtcgc tcatggtgaa caaccctcct tcggggacat tcttgtcgtg
     7141 gacgacgacc gattttaagt ccattgcctg cggatgcatg aatcgatatg gaacccccca
     7201 caccagatca atggacggca ttactccgtt gtttcatcct tatcctctgc atggcaggag
     7261 cagctctgat ggaccactgg caacgcagag tacctaacga atggtggatc cgatggggag
     7321 tcgctatcgg ctttctcctg ctagtggaag taattcttct cgaggcagat gtcgccctct
     7381 tccttggaac atttgggctc ctcgcatggt gctcagcatc agtaatcggt accccttcgc
     7441 taaaggatat gagagaagga tcaaggatcg atatcttagt cgccatctgg tacttgctag
     7501 gtatcatcgg aggaggagca gcactatact tgcatgcccc aaatgccctt tggtcactcg
     7561 gtctcgctac ggatgcaccc atgttccaac tcacagacat ggctgccatt gaactcgctg
     7621 agagtcgcgg cctgctccta cttcgcctta ttggactcgc agttggaatt ggattcatcg
     7681 agattgcttg gcgtgcacgg ttattgtacg gaggagctga tgcaaaggcg atgattgtag
     7741 ttgcacttgc cattccgtgg tggattggca tcgggccatt cggcgagaca actgcagtcc
     7801 ccccaatggt ctctgttcta atctggtctg cgttagcatt cctcatccta ccattcgtca
     7861 caataagtcg aaacatccgc acagggcaca gcggaccgtt acgaatgatc tggcatgcag
     7921 agcgttgggg actcgatcag atacctgggc agcaggtatg gattctgagt gacatagttg
     7981 agaccgcaga tggagagagg aagatacgtg aacgtatgcg
//
LOCUS       DUKB01000104            5967 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_42014, whole genome shotgun sequence.
ACCESSION   DUKB01000104 DUKB01000000
VERSION     DUKB01000104.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5967)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5967)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5967
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_42014"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(133..3126)
                     /locus_tag="HA345_03600"
     CDS             complement(133..3126)
                     /locus_tag="HA345_03600"
                     /inference="COORDINATES: protein motif:HMM:NF015155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HIH84477.1"
                     /translation="MLIEYTMVAKVTSEDDEGPESSRNPIDALRRKVSERIEGFDRTK
                     AIDAIITSPNRIQRELKSLSATGLLTRFPLATVLLCILMTILLGVESGMNDCREGWDR
                     DDWWGSSCRTESSLNVNGDLEVYLPAGSQITDDLADIQKNWTTNIMVIYVESEDQNVT
                     STEILQQMDAVERTLNIHPNDNGDEDNVISILSISTVIKEVNSSAVRVSKAFFSGLAT
                     ATGNEELSEDFNATIDEQQDILGNYAIPESQTTIDRIVGELPENAQQKLVRGVGIDTD
                     GNGVIDSNETAKYWNRAVIIVFITQELDKDGDGIDDYPIGALIANTQNRIDELGEENG
                     WEEKNLSMTLTGPVPITNAVTEYSFKLFWQIFPVGIVAVAIVLFLFHCDVLQTGRIRP
                     IQGIKVVIISGLPTLCSVWMTLGIIGITNWEVTMTVIIVGPIVLALGVSYGLHITNRY
                     AESVGTPQEKMSEALRSTGRAVFLSAVTTIIGFISLTFTPMAPIQTVGWGLALGIVVV
                     YIMTMLMVPNLTMLLDLKKPSHPPPRMFKAAVSGPVNFSAVALTFFFILMLVSAGINR
                     PNVEENIELLEMAPEEEIAVQKMKTYSTEFDAGQAGFVRVTGDISADPTFDTGVGDPY
                     DKLQGIDQLEGSINLVNQTTAVSVVFLMKSISISVNVSGYPILEIIDDSPAPDPIKDA
                     AGLVFGREATEDATFWEALQTLDAQDDSGGRQTQNFLLYVFYNSLTDETRELFISSDF
                     QKSMIYIDMPFMDVQSTAVAVDSVNEYTQNDGSLKGDISADSLSGVAAVTIAVNNEIV
                     GSQWSSLGFALLFTLITLGFVFNSARYALLTTLPVVFTVAMQWLVMDLMDVELSLVTV
                     MIGSILVGVGVDFSIHIANRVRELGGDIEAILTSASSTGMSLAEAAACTIAGLACALL
                     IPIPALSPFIYTIMILLIVAAVSALLLLPAIYALMVRSGAGLDGGADSMANRLLLRNL
                     NQSKNRSIGVDGDPVDAVLTGSESW"
     gene            3219..5690
                     /locus_tag="HA345_03605"
     CDS             3219..5690
                     /locus_tag="HA345_03605"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012361.1,HMM:NF019869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HIH84478.1"
                     /translation="MASPRLPEKRWTVDLEKRVQEAHFGPEAPPRYAFDPSSEREIFV
                     IDTPPPYPSGTWHIGAVAQYSMIDVIARSQRLLGKEVYFPWGVDRNGINIEFTVEKNT
                     GRKMKTYDRSEFIQLCEETIEEFTAAMRSTARRVGLSCDFDREYLTDSPDYRAVTQSI
                     FVDLFKKGEIVEDLRPNIYDPVEGTTIADAEVERLSRKTRLVDVRWTSTDGRDVIIST
                     TRPELICACGIVVVHPDDSRYSDLVGCELTLPVDTEGRSKTVLVQTHSSVKSEFGSGV
                     LMVCSFGDQNDVAVFRELGLDPFVAIDLEGRMTDLAGPYSGMKVSEARDAVISDLETA
                     GRIDAIVEKEQDVPVSERGKNPVEIILLKEWYVRQTHVLDRVKELADEIVFHPPRNKQ
                     FLLDWMQNITIDWPISRRRWYHTEIPVWYDESGQRVIVPPTGSYVQPWREDPPVGSVV
                     LDRDTRENIGNYEELKDQLGPLTGEEKVFDTWMDSSNSNLFVSGYINNPDLFEKAFPT
                     GLRPQGKEIVRTWLYYTLLKSALVLDRPGFQHVWIDGLGMDPWGRKMSKSLGNGIDAD
                     SVIECGAGGRTGSWKVKGPDGKQIALQAKKIGSECFRLWKACEAQVGDDFQINPEEIE
                     AKYFGVLTKMFNVARFASQFEVPEDLDTTPENLRIEDLWIINEFNGMAMKVHEAWKNI
                     DIYTAGQSIKNFSTGVFPSHWLEMVKGRLYDGDSVAAWTIHRIVRDTLAMFSPICPLF
                     SHHISTTLYDSSAVDVRNHPEQISISSDDIMEDTTDMIVEFNSMVWKEKKDAGTSLAQ
                     PISGIEIPEGLNDFADVLKAMHKLE"
     gene            complement(5695..>5967)
                     /locus_tag="HA345_03610"
     CDS             complement(5695..>5967)
                     /locus_tag="HA345_03610"
                     /inference="COORDINATES: protein motif:HMM:NF014841.1"
                     /note="catalyzes the formation of 3-phosphonooxypyruvate
                     from 3-phospho-D-glycerate in serine biosynthesis; can
                     also reduce alpha ketoglutarate to form
                     2-hydroxyglutarate; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HIH84479.1"
                     /translation="SCARGGIVNEDDALQALENGTLRSCALDVFEREPETTHPLLKHP
                     NFHGTPHIGAATFEAQARIGLEMANLLIDFFNGVIPKSVVNKSVLD"
BASE COUNT         1697 a         1354 c         1367 g         1549 t
ORIGIN      
        1 ctccgtccca gtgtgtccaa ccatcgattt gcgattgcga ccaaggatag acatcgagct
       61 ctgacttcat cagccaatgg tttgtcatga tggtgcgttg aggcgaccgt ccttgacttt
      121 gatggagtga tatcaccagg attcagaacc tgtcaataca gcatcaacag ggtctccatc
      181 tactccaatt gatcgattct tagattgatt caggttcctg agcaagagac gattcgccat
      241 agaatcagca cccccatcga ggccagcccc tgaccttacc attaatgcat aaatcgcagg
      301 aagaagaagt aatgcagaca ctgcggctac aataagtaga atcatgattg tgtagatgaa
      361 ggggctaagt gctggaatcg gaattaacaa ggcgcaagca agtccagcaa tggtgcaggc
      421 agctgcctcg gcaagtgaca taccggtgct tgaagccgag gtgaggatag cctcaatgtc
      481 accacctaac tctcgaacac gatttgctat gtgaattgag aaatctactc cgacaccaac
      541 aagaatcgaa cctatcatca cagttactaa tgacaattcg acgtccatga ggtccatgac
      601 taaccattgc atcgcgactg tgaaaacaac aggcaaagtt gtcagtaggg catagcgagc
      661 actattgaaa acaaatccaa gagtgattag tgtgaataat agagcgaaac ctagtgaact
      721 ccactgtgac ccaacaatct cattgttgac agctatcgta acagctgcaa ccccactgag
      781 ggaatctgca gaaatgtcgc ccttcagcga accatcattt tgagtatact cattcactga
      841 atccacggca acagccgtag attgcacatc cataaagggc atgtcgatgt aaatcatcga
      901 cttctggaaa tctgaggaga tgaacaattc tcttgtctca tctgttaacg agttgtagaa
      961 tacgtatagc aggaaatttt gagtctgacg gccaccactg tcatcctgtg catcgagtgt
     1021 ctgcaaggct tcccagaagg ttgcatcctc ggttgcttcc cttccgaaga caagaccagc
     1081 agcatcctta attgggtcag gtgcagggga atcgtcaata atttctaaga ttggatatcc
     1141 agagacattc accgatatag atattgattt catcaggaaa acaacgctta cagcagtggt
     1201 ctgatttaca agatttatac taccttcaag ttgatcgatg ccctgtaatt tgtcataagg
     1261 atcaccgaca ccagtatcaa aggtaggatc ggcggaaata tcccctgtga ctctaacgaa
     1321 acctgcttgc cctgcatcaa attctgtcga atatgttttc attttctgaa cagcaatctc
     1381 ttcctccggg gccatctcta gaagttcgat attctcttcc acattaggtc gattgatacc
     1441 ggctgaaacg agcattagga tgaagaagaa agtaagagcg actgctgaga aatttactgg
     1501 ccctgacaca gcagccttga acatccgtgg cggggggtga ctaggtttct tcaaatccaa
     1561 aagcatagtg agatttggaa ccatgagcat tgtcataatg taaacgacaa caatacctag
     1621 ggcaagaccc caaccaactg tttgaatcgg agccatcggt gtgaatgtaa gtgagatgaa
     1681 accaatgatt gtcgtaactg cagagagaaa cactgctctc cctgtggaac ggagggcttc
     1741 agacatcttt tcttgaggag tacctacgga ttcagcatat cgattcgtaa tatggagccc
     1801 atatgaaacc cccaacgcta gaacaattgg tccgacgata ataacagtca ttgtcacctc
     1861 ccaattcgta atgccaatga ttcccaatgt catccagaca gaacaaagtg tcgggagacc
     1921 tgagattatg accaccttga taccctggat tggacggatc cgacccgtct gcaaaacatc
     1981 acagtggaag agaaagagaa caatggcaac tgcaacaatg ccaacgggga aaatttgcca
     2041 gaataacttg aatgaatact ctgttacggc attagtaata gggactggac cggtcaaagt
     2101 catgctgagg ttcttctctt cccatccgtt ctcctcacct agttcgtcaa ttcggttctg
     2161 agtattggca ataagtgcac caattggata gtcatcgata ccgtcgccat ccttgtctag
     2221 ttcctgtgta atgaagacaa tgatcactgc tcgattccaa tatttggcgg tctcgttcga
     2281 atcgattaca ccattcccat cagtatcgat acccacacca cgtacaagct tctgttgagc
     2341 gttctccggt agttctccaa caatccggtc gattgttgtc tgggattctg gaatcgcata
     2401 gttcccgagg atatcctgtt gttcatcgat tgtcgcattg aaatcctcac taagttcctc
     2461 attgccagtt gcggtagcta aaccactgaa aaacgcctta cttactcgga ctgcgctact
     2521 attaacctct ttgataacgg tcgatattga tagaattgag atgacattgt cctcgtcacc
     2581 attgtcatta ggatggatat tcagtgtgcg ttcgacggcg tccatctgtt ggaggatctc
     2641 tgtacttgta acgttctgat cctctgattc cacatagatg accatgatat tggttgtcca
     2701 attcttctga atatctgcaa gatcatcagt aatctggcta cctgcgggca gatagacctc
     2761 caaatcacca ttaacattca aagatgattc agtacggcaa ctggatcccc accaatcatc
     2821 acggtcccaa ccttcacggc aatcgttcat acctgattcg acacccaata gaatggtcat
     2881 gagaatacaa agtagaactg tggcaagtgg aaagcgagtt aggaggcctg tagctgagag
     2941 gctcttcaac tctcgttgaa ttcgattcgg gcttgtgata attgcatcga ttgccttggt
     3001 tcgatcgaat ccctcaatcc gttctgagac cttgcgacgt agagcatcta tcgggttgcg
     3061 agatgattcg ggaccttcgt cgtcctcaga ggtcaccttg gccaccattg tgtattcgat
     3121 gagcatggtg tttgaacaca tcgcatcgat gtggtgcatc acaagcattc aatgaggaat
     3181 cgtcaagaac gaaggctttc agcctctaac cgatatccat ggcctcaccc cgccttcctg
     3241 agaagaggtg gactgtagat cttgagaagc gagttcaaga ggcccacttc ggaccagagg
     3301 cgcctccaag atatgctttc gatccttcct cagaacgaga aatcttcgtt attgacacac
     3361 ctccacccta ccccagcggg acttggcata tcggtgctgt tgcacagtat tctatgattg
     3421 atgtaatcgc ccgcagtcag cgacttctag gtaaggaggt ctacttcccc tggggtgtag
     3481 atcgcaatgg aatcaatatt gaattcacag ttgaaaaaaa cacaggtcgg aaaatgaaaa
     3541 catatgaccg atctgaattc attcaactct gcgaagagac aatagaagaa ttcactgcgg
     3601 ctatgcggag tactgcccga cgcgtggggc tatcctgtga ctttgatcga gagtatctta
     3661 ccgactctcc tgactaccgt gctgttactc aatccatatt cgtggacctt ttcaagaaag
     3721 gagagattgt agaggattta cgtccgaata tctacgatcc tgtcgaaggc acaacaatcg
     3781 ctgatgcaga agtcgaacgt ctttcacgta aaacgcggct agtcgatgtc cgttggactt
     3841 caacagatgg acgcgatgtc atcatctcaa ctactcgacc agaactaatc tgtgcgtgtg
     3901 ggattgttgt agtacatccc gatgactcaa gatacagcga tttagttggc tgtgaactta
     3961 ctctaccagt agatacagaa ggaagaagca aaactgttct tgtccaaaca cactcgtctg
     4021 tgaaatctga atttggttca ggtgttttga tggtctgttc atttggcgac caaaatgacg
     4081 ttgctgtatt cagggaactt ggattagatc cctttgtggc tatcgatctt gaagggagga
     4141 tgactgatct tgctggccca tacagtggga tgaaagttag cgaggcaaga gatgctgtca
     4201 tctctgatct cgaaactgca ggaagaatcg acgccatcgt tgagaaagaa caagatgtac
     4261 ctgtatcaga acgcggaaag aatcctgttg aaataatcct gttgaaggaa tggtatgtac
     4321 gtcaaactca tgtccttgat agagtcaagg aactggccga tgagattgtt tttcaccctc
     4381 ctcgaaacaa gcaatttctc ttggattgga tgcagaatat cactatagat tggccaatct
     4441 caaggagacg atggtatcac accgaaattc cagtgtggta tgatgaatca gggcaacgtg
     4501 tcatagttcc accaacggga tcttatgtgc aaccttggcg cgaagatcca cctgttggaa
     4561 gcgtagttct tgacagggat acacgagaaa acataggtaa ctatgaggaa ctaaaggatc
     4621 aattaggccc actaacaggt gaagagaaag tattcgatac atggatggat agttcaaatt
     4681 cgaatctatt tgtttctggt tacatcaata atcccgatct ttttgagaag gcattcccta
     4741 caggtctaag gcctcaaggg aaagaaattg ttcgtacatg gctctactac actctgctga
     4801 aatctgcgct tgtacttgat cgccctgggt tccaacatgt atggattgac ggtttaggaa
     4861 tggacccttg gggtcgaaag atgtcgaaat ccctaggcaa cggcatcgat gctgactcag
     4921 tcatcgaatg tggtgcagga ggacgtactg gatcttggaa agtaaagggt cccgatggta
     4981 aacagattgc attacaggct aagaaaattg gatctgaatg cttccgccta tggaaagcat
     5041 gcgaggctca agtcggagat gactttcaga ttaatcctga agaaatcgaa gccaagtact
     5101 tcggtgtcct tacgaagatg ttcaacgttg ctcgattcgc ctcacaattt gaagttccag
     5161 aggatttgga tactacccct gaaaatctcc gaattgagga cctttggatt atcaatgaat
     5221 tcaatggcat ggcaatgaaa gtacatgaag cctggaaaaa tatcgatatc tacacagctg
     5281 gccagagtat caagaacttc agcactggag tatttcctag ccattggctt gagatggtaa
     5341 agggtcgact gtatgatggc gattctgtcg cagcatggac gattcatcgt atcgttcgcg
     5401 acacattagc catgttcagt ccgatatgtc cgttgttcag ccaccacatc tcaaccactc
     5461 tctatgattc atctgcagtc gatgtgcgta accatccgga gcagatttca atttctagtg
     5521 acgacatcat ggaggacact acagacatga ttgttgaatt caattccatg gtctggaaag
     5581 agaagaaaga tgctggaaca agcctggcac aaccaatctc aggaatcgag atccctgagg
     5641 ggctgaatga cttcgcagat gtgttgaagg cgatgcataa actagaatga aaaatcaatc
     5701 aagaactgat ttattgacta ccgattttgg tattaccccg ttaaagaaat caattagcag
     5761 gttagccatt tcaagtccaa tacgtgcttg ggcctcaaag gttgcagcac caatatgtgg
     5821 tgttccgtga aaattcggat gcttaaggag gggatgtgta gtttcgggtt ctctttcaaa
     5881 aacatccaac gcgcaagatc tcaacgtacc gttctcaagt gcttgaagag cgtcatcctc
     5941 attgacaatt ccaccacgtg cacaaga
//
LOCUS       DUKB01000105            6024 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_183427, whole genome shotgun sequence.
ACCESSION   DUKB01000105 DUKB01000000
VERSION     DUKB01000105.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6024)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6024)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6024
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_183427"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..887)
                     /locus_tag="HA345_03615"
     CDS             complement(<1..887)
                     /locus_tag="HA345_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84480.1"
                     /translation="MSGRFIICETCGRVTSGSSGLQARTSPSEGAPSGMGGRGGSRPS
                     RKAIKGAAPGRRKQASAPPPPAEIQRRMALRQLSGDDAPRRLIVRKKEQRKAAFALVI
                     VALILFTPVQDPLVDGLEDSFGNLLDLVTPSTTHPLEASYTLRSTYEYEFGPSSSDSG
                     FMYKLPIPQSERTAAGFSDILATKTDGGTIPAPVLQRVVSMKVGSGAAVVDVPLTGGV
                     VRDSSSAITLEDGYSQVFWPAPGGTGSEDCQYGRCLIWSGAIPQSSSIESALLNVEYE
                     IESYSYTWWTEADLPSSVTG"
     gene            complement(976..1695)
                     /locus_tag="HA345_03620"
     CDS             complement(976..1695)
                     /locus_tag="HA345_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84481.1"
                     /translation="MAWARGMRRYTPIQDLSQAYKALIIGFIGGAILASALDIWVFRR
                     MYEDLAQDSIYLVEMGALLLLAGWAEGALCVYLCSRSERKVTSAATTTGYAFGIGSAA
                     MTTAVAAVRIFDPALASIGSDVHGFGIDTILVSVLIGVSAGFTFAPLGSAQGALVRHK
                     ERFTPLVLTGAGRAAVRLCIYLAVLVSPIALGFGLALALWLDARANNRWLPSSLTPLQ
                     LRVERRMLKNRKLGQPDIEEE"
     gene            1841..3070
                     /locus_tag="HA345_03625"
     CDS             1841..3070
                     /locus_tag="HA345_03625"
                     /inference="COORDINATES: protein motif:HMM:NF014433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRC40/GET3/ArsA family transport-energizing
                     ATPase"
                     /protein_id="HIH84482.1"
                     /translation="MVRLLLFGGKGGVGKTTMAAATAVWLADSGLRTLLISSDPAHST
                     SDSLEANLGPKPTPVPGVPNLEGLELDPEMGASALMPMLSQAMGGATGGPLSAILGQD
                     TVDGIKNEAETMDASDLMLPGMDEAMAFETILRHVENPRHDVVVFDTAPTGHTLRFLG
                     LPEILDGWTDRILRLMRMTGGIRAMLMGGSREKEIRGEIERFQRRIRHVRRIMADDTV
                     TTFSLVTIPERMAVSESIRAADALAEYQILVDRILVNRCTPNLDHPFLQSRRDIEQGY
                     LAEIKDRYEGLSIHTVPLESSDIHGLDHLRRVGSHLLGAAEPTNPSSTELRIGTPMYF
                     DVIRSEVREESDDGTTYTLHLPGADRSEMGLRGEDGVLYISLNGQEKSLNIGRDFDSN
                     AVQAQFNGDLLSVHIPR"
     gene            3121..4479
                     /gene="ffh"
                     /locus_tag="HA345_03630"
     CDS             3121..4479
                     /gene="ffh"
                     /locus_tag="HA345_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HIH84483.1"
                     /translation="MALEGLRRGIQGALGRLRGKRTIDEEELRAMVRDLRRALLSADF
                     NVRQTKEITDRLERRMKEDEPRPGVTLQTHAMNIIYMELVRMLGAPKEIIPFNQRVLM
                     VGLYGQGKTTTTAKMAAWWKRKHKLDIGVIEADVHRPGAYAQLCQLLEPHGIDVYGEP
                     ENPDAASIVKNGIVSLGNKDVLIVDTAGRDQLDEDLQAELLDIADLVKATETLLVIDA
                     QVGQAAGPVAAKFHELVGVTGVIVTKMDGTARGGGALSAVATTGSPIVFIGEGERVED
                     LEKFEGDRFISRLLGMGDIQGLIDLAPEDLDQEEAMRLTERLMSGRFSLNDMSQQMEM
                     MSKIGTVDRILSHLPAGMFGGLGAMGRSQKEQMQGNLERFKVIMDSMTSHEKDEPQVL
                     KAERIRRIAKGSGVNEKDVRELLAQWNRSRKMMKGIRGNRQLRKQMKSMMSDDTDFEL
                     PM"
     gene            4489..5070
                     /locus_tag="HA345_03635"
     CDS             4489..5070
                     /locus_tag="HA345_03635"
                     /inference="COORDINATES: protein motif:HMM:NF015946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84484.1"
                     /translation="MRHFAIVGHRAPSSGSINLNDLSGSGGRMDVLARAISSALFLSH
                     SIREDTTITLHLMGGPGVPRRIRFNGANVKGLHVDERAIGGRIRSVISDPVPPRGQWV
                     NHGQGIEHSGGDLETTLNEWKDAEIKAYVLSKEAPRLVKDSDLEELGFILSDDRPFNP
                     DEERIMAGIPCCSLGDRWLQGHIAIAIVHHILD"
     gene            5082..5309
                     /locus_tag="HA345_03640"
     CDS             5082..5309
                     /locus_tag="HA345_03640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006997222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84485.1"
                     /translation="MNEDNSKRIWTYMQDAGDRLVGKLPPSRRHPKGRNPYAHIAICV
                     RSKFGVTYKEIPDERIDEVIEYIEYLVQNPT"
     gene            complement(5326..>6024)
                     /locus_tag="HA345_03645"
     CDS             complement(5326..>6024)
                     /locus_tag="HA345_03645"
                     /inference="COORDINATES: protein motif:HMM:NF015817.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84486.1"
                     /translation="ERLRQGSINILVATDVAARGLDVEAVDLVIQDDMPQNSEVYVHR
                     VGRTGRAGRHGKSILLVSKGVSRRIGMLKKVAGHLDNEPVPTASEAEELQTLRLVEDM
                     LENQPSKLAKSTFKAALETDLSVEDIALSAIEMLVHDTDEGQSKKGSSTALALAVGKK
                     DRIRPKDLVGAICNDGGLDGNMIGRIDVLDKISVIEVPSSEIDRLVTNLSKSKFRGRW
                     LKPRHADDWEFSFR"
BASE COUNT         1630 a         1478 c         1481 g         1435 t
ORIGIN      
        1 ccagtaaccg aagaggggag atcagcctca gtccaccaag tgtatgagta cgattcaatt
       61 tcatattcaa cattcaacaa tgcactctca atggatgacg attgaggtat agctccagac
      121 cagattaagc aacggccata ctggcaatct tcacttccag tacctccagg cgcaggccag
      181 aagacctgag agtaaccgtc ttcaagagtg attgcgctac tagaatcgcg cacaactccc
      241 cctgtaagtg gaacatcgac tacagcagca cccgacccta ccttcataga aactacacgc
      301 tgcaatacag gtgcagggat ggttcctcca tcagtcttag tcgcgagtat atctgagaag
      361 ccagcagcag ttcgttcaga ctgaggtatc ggaagtttgt acataaagcc agaatcagat
      421 gatgatggac cgaactcata ttcataggta ctccgaagcg tgtaagatgc ctctagtgga
      481 tgagtcgtac taggtgtgac taaatcgagg aggttgccga aagagtcctc aagtccatct
      541 acaagaggat cttggacggg agtaaacaga attaatgcaa caattaccaa tgcaaaagct
      601 gccttcctct gttctttttt acggacgatt aaacgtcgag gagcatcatc tccactcaac
      661 tgtcgaagtg ccattcttcg ttgaatttca gctggcggag gaggagcact tgcttgttta
      721 cgccttcccg gtgctgcacc cttaatcgcc ttacgactgg gacggcttcc accgcgcccc
      781 cccattccag atggtgcacc ctctgaagga gaggttctag cctgtaaacc actagacccg
      841 gaggtcacac ggccacatgt ctcacagatg atgaaccggc ccgacattgg agcccgacag
      901 tgaggacagc ggggcatcca acgaaactca gcgaaccgat tcatgaacct tgagcaagca
      961 atccctaatt cgggctcatt cctcttcgat atctggttgg ccaagttttc gattcttgag
     1021 cattcgtcgt tcgactctaa gttgcaatgg agtaagacta cttggaagcc agcgattgtt
     1081 agcccgcgca tcaagccata atgcgagcgc tagtccgaaa cctagagcta tggggctgac
     1141 aagtacagcg agataaatgc aaaggcgcac tgcagcgcga cccgcccctg taaggacaag
     1201 aggtgtgaac cgttccttgt ggcggactag ggcaccttga gcactaccga gaggtgcgaa
     1261 ggtaaagcct gcagacacgc caattaagac agagacgagg attgtatcta tgccaaatcc
     1321 atgaacatct gaaccaatgg aagcaagtgc tggatcgaag attctgacgg cagcaacagc
     1381 ggtcgtcatt gctgcactac cgataccgaa tgcataacca gttgttgttg cagcagaggt
     1441 aacctttcgc tctgaccttg aacagagata gacgcaaagg gcaccctctg cccatcctgc
     1501 aagtaacaac aacgccccca tttccacgag atatatcgaa tcctgggcta gatcttcata
     1561 catacgtcgg aatacccaga tgtcaagagc agaggcgaga atagcaccac caatgaaacc
     1621 aattatcagg gctttgtagg cttgtgaaag gtcctgaatc ggagtgtaac gccgcatccc
     1681 acgagcccat gccatcgtga acgtaatcag cccaatgagc atcgcaactt ggaactgcca
     1741 ttgtggcaat tctgtcactt ccatgactct tccagcggct tctctgtgaa atatccgccg
     1801 cattacgttg gttcaagaag tgggttccac tcgatacgcc atggtgcggc tcctactctt
     1861 tggtggcaag ggcggtgtcg ggaagacgac gatggctgct gcaactgcag tatggttggc
     1921 tgattcaggc cttcgcacac tactcatatc aagtgacccg gcacattcaa cctctgattc
     1981 tttagaagca aatctaggcc ctaaacccac accagttccc ggagtaccca atctcgaggg
     2041 cctcgaacta gatcctgaga tgggagcatc cgcactgatg ccaatgctta gtcaagcaat
     2101 gggtggtgca accggtggcc cactcagtgc gattcttggt caagataccg tagacggaat
     2161 caagaatgaa gctgagacga tggatgcttc agatctgatg cttcccggga tggatgaagc
     2221 aatggctttc gagactatac tcaggcatgt agagaatcct cgacatgatg tcgtagtttt
     2281 cgataccgcc ccaacagggc atacacttcg attccttgga ctccctgaga ttctagatgg
     2341 ttggacggac aggatactta ggctgatgcg tatgactgga gggattcggg ctatgctaat
     2401 gggaggctca cgggaaaaag aaattcgagg agaaatagaa cggttccaaa ggcgtatacg
     2461 acacgttcgt aggataatgg cggacgacac ggtaaccacc ttctcgttag tgactatacc
     2521 tgagagaatg gcagtatccg agtcaattcg tgcagctgat gctctagcag aataccagat
     2581 tctcgtcgat cgtatccttg tgaaccgttg cacaccaaac ttggatcatc cattccttca
     2641 gagccgacgt gatatcgaac aaggctacct tgccgaaatc aaagatcgct acgagggcct
     2701 tagcatccac actgtaccat tagaatcctc tgatatccat ggccttgatc atctgaggcg
     2761 cgtaggaagt cacctattgg gtgctgccga acccacgaac ccaagttcta cagagttacg
     2821 aatcggtaca ccgatgtact ttgatgtcat tcgttcggaa gtacgggaag aatcggatga
     2881 tgggacaacc tatactctcc atcttccggg tgcagatcgt agtgaaatgg gattgagagg
     2941 tgaggatgga gttctgtata tctcattaaa tggtcaagaa aagagcctga atattggcag
     3001 ggatttcgat tcaaacgctg ttcaagcaca gttcaatggt gatttactct cagtccacat
     3061 ccctcgctaa tgggatagat tagccgttgg cttcaaaccg aaccggctcc acgtcgacct
     3121 atggcccttg agggactcag acgtggcatc caaggtgcgt tgggtcgact tcgtggcaag
     3181 cggactatcg acgaagaaga actccgtgca atggttagag acctcaggag agcgctcctg
     3241 tccgctgatt tcaacgtccg ccagacaaag gaaatcactg atcgcttgga acgtagaatg
     3301 aaggaagacg aacctcgccc gggcgttact ctgcagaccc acgcaatgaa catcatctac
     3361 atggaactcg tacggatgct tggtgcaccg aaggagatta tcccgttcaa tcagcgtgta
     3421 ctaatggtcg gactttacgg acaagggaag acaactacca cggccaaaat ggctgcgtgg
     3481 tggaaacgga agcataagtt ggatatcggt gtgattgagg cagatgtgca tcggccaggc
     3541 gcttatgctc aactctgtca gctactcgag ccccatggga ttgacgtata tggagaacca
     3601 gaaaacccag atgctgcttc gattgtcaag aatggtatcg tgtctctcgg caacaaggat
     3661 gtgctaattg ttgacaccgc aggtcgtgac caattagacg aagacctcca agctgaactt
     3721 ctggacattg ctgacctcgt gaaggcaact gaaactctac tcgtaattga tgctcaagtc
     3781 ggtcaagcag caggccccgt tgctgctaaa ttccacgaac ttgtcggcgt cactggagtc
     3841 atcgtcacga agatggacgg taccgctcga ggcggcggag ccctgtcagc cgtcgcaact
     3901 acaggatctc ccatcgtctt tatcggggaa ggtgaacgtg ttgaagacct tgagaagttt
     3961 gagggagatc gtttcatctc gcgccttctt gggatgggtg acatccaggg cctgattgat
     4021 cttgcacctg aggatttgga tcaagaggag gcaatgcgcc taacagagag gctcatgtct
     4081 ggtcggttct cattgaatga tatgtcccag caaatggaga tgatgtcgaa gattggaact
     4141 gttgaccgta tcctttcaca tcttccagct ggtatgtttg gaggccttgg agccatggga
     4201 cgctcacaaa aagaacaaat gcaaggaaac ttggagcgat tcaaggtcat catggattcc
     4261 atgacatccc atgaaaaaga cgaacctcag gttttgaagg cggaacgcat tcgacgtatc
     4321 gctaagggct cgggagtcaa cgaaaaggat gtgcgagagc tcctagcaca atggaatcgt
     4381 agccgtaaga tgatgaaggg tattcgagga aatcgccaac tacgtaagca gatgaaatcg
     4441 atgatgagcg atgataccga cttcgaacta cctatgtgag ggcgtcgaat gcgtcacttt
     4501 gccattgtag gacaccgggc accttcttcc gggtccataa atctcaacga tctttcgggt
     4561 tctggtgggc ggatggacgt tctcgcccgt gcaatatcat ctgcactctt tctctcacac
     4621 agtattcgag aagacaccac aattactctc caccttatgg gtggccccgg agtcccccgg
     4681 agaatccgct tcaacggagc taatgtcaag ggactacacg ttgatgagag agctattggg
     4741 ggacgtatcc gatctgtaat ctctgatcca gtgcctcccc gtggtcaatg ggtcaaccat
     4801 ggacagggga ttgagcattc agggggcgat cttgaaacaa cattgaatga atggaaagat
     4861 gctgaaatca aggcctatgt tctctcaaag gaagcacctc gacttgtcaa agattctgat
     4921 ttggaagaat taggtttcat cctcagtgat gatcgccctt tcaatccaga tgaggagaga
     4981 ataatggctg gaatcccttg ttgttcattg ggagacagat ggttgcaggg ccacatcgca
     5041 attgcgattg tacaccacat cctagactga gagggacctg aatgaacgag gataactcaa
     5101 agcggatctg gacctatatg caggatgcag gcgatcggtt agtcggtaaa ctaccgcctt
     5161 caagacgtca cccaaaggga agaaatccgt atgcccacat tgctatatgt gttagatcaa
     5221 aattcggggt gacctacaaa gaaatccctg acgaacgtat cgatgaagtc atcgagtaca
     5281 tcgaatatct ggttcaaaac ccaacataac cacgtcatac agaagttacc tgaatgagaa
     5341 ttcccaatca tcagcatgtc taggcttcaa ccatcgtcca cggaatttac tttttgagag
     5401 attagtgact aatctatcaa tttctgaaga tgggacttcg ataacactga ttttatcgag
     5461 aacatcaatt cgtccaatca tatttccatc caatccgcca tcattacaaa tggcgccaac
     5521 taaatcctta gggcgaatac ggtccttttt cccaacagca agagcaaggg cggttgaact
     5581 accttttttt gactgccctt catcagtatc gtgaactaac atttcaatag cagataaagc
     5641 aatatcttct acgctaagat ccgtttctag tgcggccttg aatgtcgatt ttgctaattt
     5701 actaggttga ttctcaagca tatcttccac taaacgaaga gtttgcaatt cttctgcttc
     5761 cgacgctgtg ggtactggtt cattgtctaa gtgtcctgca accttcttta gcattccaat
     5821 tcgacgactt acaccctttg agacaagtag gatactcttg ccgtggcggc cggctcttcc
     5881 cgttcgtcca actctatgca catatacctc agaattctga ggcatgtcat cctgaataac
     5941 tagatctaca gcctcaacat caagacctct tgctgcaaca tctgtagcta ctaaaatatt
     6001 gatagaaccc tgtcttaatc tttc
//
LOCUS       DUKB01000106            4387 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_71506, whole genome shotgun sequence.
ACCESSION   DUKB01000106 DUKB01000000
VERSION     DUKB01000106.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4387)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4387)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4387
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_71506"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            46..222
                     /locus_tag="HA345_03650"
     CDS             46..222
                     /locus_tag="HA345_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84487.1"
                     /translation="MKGAAEVVIGLMSLTQGGQLKRTLAVTRFLRASGPVQARIGWRV
                     EPSMGFIVDITAVS"
     gene            234..1955
                     /locus_tag="HA345_03655"
     CDS             234..1955
                     /locus_tag="HA345_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013748652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system ATPase subunit"
                     /protein_id="HIH84488.1"
                     /translation="MADEDNPEFQKGDLESVMARHDHVKRWVEDFEAQHGSRPYFYGP
                     LDRGAKSLEPRNLIYTLKPPLFAHIYKPPDDDEQGAGTTLWFGIEPVLNEEEEVIRME
                     IVERLLRDAPSAPSFTSDSEFESILVGMIEKMTTMKSAGIQAEGLLGPARDYLGLGEP
                     LIQVKEEQLERLKYVIIRDLVKSGPLEALLSDEQLEDIHSVGLRYVNMDHKVFGMVTS
                     NIRFRDREVLTRYLRSMSERIGRPVSDSKPIIDGALLDGSRINIIFSDDVSMLGPSFT
                     IRKFAEETISFTQLIQWGTMSAQIAAYIWLCLENGMSLLVSGETASGKTTTLNAILPF
                     IDHNVKIYSAEDTPEVKVRHRLWQRLVTRDSKNVDSRVEMFDLLKAALRSRPRYIIIG
                     EIRGVEGATAFQAMQTGHPVIATFHASSIVKMIQRFTGDPINVPARFFDNLNFAIFQE
                     VVEAPGGGIARRVTGIDEVIGYNKFADGILTRGMFEWDPVSDKHYFRGMFQSHLMENK
                     MAPMMGFANKREIYDEMERRTEAIQRMVDRDLTHYDDVFDLLDVYYQQGWEQFSAAID
                     TWVGINH"
     gene            1977..3779
                     /locus_tag="HA345_03660"
     CDS             1977..3779
                     /locus_tag="HA345_03660"
                     /inference="COORDINATES: protein motif:HMM:NF012694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84489.1"
                     /translation="MERLPTWQISIRRLGMPVASYAIQVVLPATVFGLILGAVIFFFS
                     SSLFTGASGILLAFLFPLLSGGMAVVWPLIQTQRTAIAIEREMHMFITRMGILSLGDA
                     GAQSMFDILKQMGDYGALAEEVQAIETLVERWHTNLPEAARIVGRQSPSHIWGDFLDR
                     MAFSVEAGQPLEEFMRSEQDTFQEEFNTLYDTRLEAVDTLREIYISITTTGMFLLVVA
                     GIHLVLFMTGSLDDDPWTVLVRIRWILLAALIYSVLQLFGLIFFIVLIPDDDLFARNN
                     IATPYIIRMRRTWALATIIGLVIILSIFTAGFVVDYTFIADNWDRYGLLSIAVIVTPF
                     AFPAYLVSREEKSVRRRDESYPGFIRALGGTAQARAAEPSATVRALKDIDFGALNASI
                     DMLERRLSMRINSDNSWTWFAADTNSMMVSRFIRIYLEGAQTSGEPAGVAELVSKNTT
                     NLLSLRRRRALSSGTMQGVAFGVLIAMITSLNITISIVQGLGSSISGVAQGLVGTDAS
                     AIPAMAGGFGLPVLDDSTVVEQNIFLFKVLVSILVIFMIMVLGLISARIRGGGIALSV
                     GQMITMLWVAGLTSLLTAVLLDASIGLFISNAAN"
     gene            complement(3780..>4387)
                     /locus_tag="HA345_03665"
     CDS             complement(3780..>4387)
                     /locus_tag="HA345_03665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020379585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HIH84490.1"
                     /translation="DELYPETPVPLDHSDSYTLLVAVMLSAQTTDKKVNEVTPALFSA
                     ASTPEKMAKLDVAEIQEIIREIGLAPTKAKNLRRMAEQIIDAGHGIIPEWGFLESLAG
                     VGHKTASVVMAQAFGIPAFPVDTHIHRLAARWGLSNGSTVERTERDLKAVFLRETWNS
                     RHLQIIFFGREYCPARNHDLTQCPICSWAATKKRIAEERRR"
BASE COUNT          993 a         1029 c         1134 g         1231 t
ORIGIN      
        1 ctcgccatgg atcctcatga agtcccggaa gttattttcc gtgagatgaa gggggccgct
       61 gaggtcgtta ttggcctgat gtccctgact caggggggtc agttgaagcg tactctggca
      121 gttacccgtt tccttcgagc ctctggaccg gttcaagcca gaatcggttg gcgtgtcgag
      181 ccgagtatgg gcttcatcgt cgatatcacg gcggtcagtt gaggtgactt tggatggcag
      241 acgaagataa tcctgagttc caaaagggcg atttagaatc agtaatggcg cggcacgatc
      301 acgtcaagag gtgggttgag gattttgagg ctcagcatgg gtctcgccct tacttctacg
      361 gtcctctgga ccgtggtgct aagagtttag aacctagaaa cctcatctat actctcaagc
      421 cacctttgtt cgctcacatc tacaagcctc ctgatgacga cgagcaggga gccggaacca
      481 cgctatggtt tggtattgaa ccggtgctga atgaagagga ggaggtaata cgtatggaga
      541 ttgtagaacg tctactacgt gatgctccta gtgccccatc tttcacatct gattctgagt
      601 tcgagagtat tctcgtgggt atgatcgaaa agatgactac tatgaagtcc gcaggcatcc
      661 aagctgaggg tttacttggg ccagcacgcg actatcttgg tcttggtgag cctctaatac
      721 aagtaaaaga ggagcaatta gagcgattga agtatgtcat tatccgcgat ctcgtgaagt
      781 ccgggccgtt ggaagccctt ctgtctgatg aacaactgga agacatccac tcggttggtt
      841 tacgctacgt caacatggat cacaaggtgt tcggtatggt tacctccaac atccgcttcc
      901 gggatcgaga agtgttgact cgctatcttc gttcaatgtc cgaacgtatt ggccgcccgg
      961 tctctgatag taaaccgatt attgatggtg cacttctcga tggttctcga ataaatatca
     1021 tcttcagtga cgatgtatcg atgcttggac catcgtttac gattcgtaag ttcgctgagg
     1081 aaaccatctc gttcactcaa cttatccaat ggggtacgat gtcggcccag attgctgcat
     1141 acatttggct atgtcttgag aatggtatgt cacttctcgt gtcaggtgaa acggcgtcag
     1201 gaaagacaac aacgctcaac gcgattcttc ctttcattga ccataatgtc aagatttact
     1261 ctgcagagga tactcctgaa gtgaaggttc gccatcgtct ttggcaacgt ctcgttactc
     1321 gcgattcgaa gaacgtggat tctcgcgtcg aaatgttcga tcttctgaag gcggctctcc
     1381 gttctcggcc tcgctacatc attatcggtg agattcgtgg agttgaaggg gctacagcct
     1441 tccaagcaat gcagactggg cacccagtga ttgcaacttt ccacgcatct tctattgtca
     1501 agatgattca gagatttacg ggagatccga ttaatgtacc cgcccgtttc ttcgacaacc
     1561 tgaatttcgc tatattccaa gaggtagttg aagccccagg tggtggaatc gcacgacgtg
     1621 taactgggat tgacgaggtc atcggataca acaagttcgc agacggtatc cttactcgag
     1681 gtatgttcga gtgggatcct gtctccgaca agcactactt ccgaggtatg ttccaatctc
     1741 atctgatgga gaataagatg gcgccaatga tgggtttcgc taacaagcgc gaaatctatg
     1801 atgaaatgga gcgacggacg gaagcgattc agaggatggt tgaccgcgat cttacccatt
     1861 acgacgatgt cttcgatttg ttggatgtat actatcagca gggctgggag cagttctctg
     1921 ctgctatcga cacctgggta ggaatcaacc attgagtagg attcgggggg ctgcaaatgg
     1981 aacgcctccc aacttggcag atttccatcc ggcgtctcgg tatgccggtc gcctcctacg
     2041 ctatccaagt agttctacct gcaactgtgt ttggcctcat cttaggggct gtcatcttct
     2101 tcttctcctc ttctttgttt acaggggctt cagggatcct gcttgcgttt ctcttccctc
     2161 tacttagtgg ggggatggca gtggtatggc ctctgattca gactcaacgt acagcgattg
     2221 caatcgagcg tgagatgcac atgttcatca cgcggatggg aatactttcc ttgggcgatg
     2281 ctggtgcgca gtccatgttc gacattctga aacagatggg ggactatggt gctcttgcag
     2341 aagaggtaca ggcaattgag acgttagttg aacgatggca tactaatctc ccggaagcgg
     2401 ctcgaattgt tggtcggcag agtccttcgc atatttgggg ggatttcctt gacaggatgg
     2461 cattctctgt cgaagcaggt caacccctcg aggaatttat gcgttcagag caagacacct
     2521 tccaagagga gtttaacacg ctgtatgata cccgcctcga agctgtggat acactccgtg
     2581 aaatttacat ttcaatcact acgactggca tgttccttct tgttgtagca gggattcatc
     2641 tcgtgttatt catgacaggg tcattagacg atgacccttg gacagtactt gttcgtattc
     2701 gctggatcct tctcgctgca ctcatctaca gtgtactcca attgtttggc ctgattttct
     2761 tcattgttct catcccagac gatgatttgt tcgcgaggaa taatatagca actccttaca
     2821 taattcgtat gcgacgtacg tgggctttgg ctacaataat tggactagta atcatcctgt
     2881 ccattttcac tgccggtttc gtggtagatt acacctttat cgctgataat tgggaccgct
     2941 acggcctgct atctatcgca gtaattgtga ctccgtttgc tttccctgcc tatctagtca
     3001 gtcgagaaga gaagtcggtc cggcggcgtg acgagtcata ccctggattc atccgcgctc
     3061 ttggcggaac ggctcaggct cgcgcagctg aaccgagcgc tacggttcgt gcattgaaag
     3121 acatcgactt cggcgcgcta aatgcctcaa tcgacatgct ggagaggcgt ctctcaatgc
     3181 gaatcaatag tgataattct tggacatggt ttgctgcaga tacaaactcg atgatggttt
     3241 cacgtttcat tcgaatctat cttgaaggtg ctcaaacgag tggagaacct gcaggtgtag
     3301 cggaacttgt atccaagaat acgacgaatc ttttgtcact taggcgacgt cgggccttat
     3361 cctcgggaac gatgcagggt gttgcgtttg gtgtacttat tgcaatgatc acgagtttga
     3421 acatcacaat ttccatcgtt caaggtctag gttcatccat tagcggtgtt gcacaaggtc
     3481 tcgttgggac cgatgcatct gccatccctg ctatggcagg tggattcgga cttccagtcc
     3541 tcgacgacag cacagttgtt gagcagaata tattcctgtt caaagtcctc gtctctatac
     3601 tcgtgatatt catgattatg gttctcggtc tcatttcagc taggattcga ggaggtggta
     3661 tcgcattatc agttggtcaa atgattacga tgctttgggt tgctggttta accagtttgt
     3721 tgaccgcagt cctactcgat gcgtccatcg gtttgttcat ctctaatgct gcgaactgat
     3781 tagcgacggc gttcttcagc aatccgcttt ttcgttgccg cccatgaaca gattgggcat
     3841 tgtgtcaggt catgattacg ggcaggacag tactcacgtc caaagaagat aatctggagg
     3901 tgacgagagt tccatgtctc tctcaggaag accgctttca gatcacgctc tgtgcgttcc
     3961 acggtgctgc cattgctcaa accccacctt gcagcaagcc gatggatgtg cgtgtcaact
     4021 ggaaaggcag ggatgccgaa tgcctgtgcc atgacgacac tcgctgtctt gtggcctact
     4081 cctgcaagtg attctaggaa tccccattca gggatgatac catggcctgc atcgataatt
     4141 tgttcagcca tccgccgcag atttttcgct ttagtaggtg ctagtccaat ttcacgtatg
     4201 atttcttgaa tctccgcgac atctagttta gccatttttt cgggcgtcga agcagcagaa
     4261 aatagagcag gagttacctc gttgaccttc ttgtctgttg tttgagccga gagcataacg
     4321 gcgaccagta gagtgtatga atcggagtga tccagtggga ctggagtttc aggatagagt
     4381 tcgtcca
//
LOCUS       DUKB01000107            3908 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_295697, whole genome shotgun sequence.
ACCESSION   DUKB01000107 DUKB01000000
VERSION     DUKB01000107.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3908)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3908)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3908
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_295697"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..154
                     /locus_tag="HA345_03670"
     CDS             <1..154
                     /locus_tag="HA345_03670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013905170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HIH84491.1"
                     /translation="GIEVRARTPRVIAEEAPNAYKDVDDVIRLTSQAGLARPVARLTP
                     IAVIKG"
     gene            complement(159..731)
                     /locus_tag="HA345_03675"
     CDS             complement(159..731)
                     /locus_tag="HA345_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84492.1"
                     /translation="MVDEKTILIAAAIAFLGFIGVSLLNPGLGVTTDDERIEDGCLAG
                     GHSGGTIVRHDHIHVDIFIEDEDGVMQHVSPLTDVGAGSPDDPLNSPCMRYIHTHTPM
                     PHSTTGDQDTTAYLHIETPTALEIELRHWFMIWGQEFSETNLMGYDTGDTHEIVVTYN
                     GEPVEDYMSFLIEEGVQDDIIKIEYRSKVA"
     gene            786..1412
                     /locus_tag="HA345_03680"
     CDS             786..1412
                     /locus_tag="HA345_03680"
                     /inference="COORDINATES: protein motif:HMM:NF012933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2 family
                     protein"
                     /protein_id="HIH84493.1"
                     /translation="MPTLKGTPFWWDDAKRHLRDVDSEIGRIIDCVEEPSLIGEGDIV
                     RTICNAVVGQQISAIAADAIWKRLLDYCGGTFDPNAITKITEEDQKKIGISRSKGRTL
                     AGIAEISDHLQDIEWSKMSSEEVVGELRPLWGIGPWTIDMVRIFSLLDPDVLPIGDIG
                     VIRCIEAMEGRGPLEIKEIEQRAEIWKPFRTCAVWYLWRQHDESPVQY"
     gene            complement(1420..1614)
                     /locus_tag="HA345_03685"
     CDS             complement(1420..1614)
                     /locus_tag="HA345_03685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84494.1"
                     /translation="MTVQMKPRGKEKNVEASMSELKSEVEDLRQLVHTLLTIIMEEAD
                     GIQSGAAPTIPNQPKRRFSM"
     gene            complement(1745..1816)
                     /locus_tag="HA345_03690"
     tRNA            complement(1745..1816)
                     /locus_tag="HA345_03690"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1782..1784),aa:Thr,seq:ggt)
     gene            complement(1999..2232)
                     /locus_tag="HA345_03695"
     CDS             complement(1999..2232)
                     /locus_tag="HA345_03695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84495.1"
                     /translation="MRNTRLCDLGGKCSESGFGFHATALVYIRVIHDLNLSYQRCLNI
                     WGGGGVSVFWVTLVRCLAGFIGGIFQGLGVTFG"
     assembly_gap    2276..2565
                     /estimated_length=290
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2678..3829
                     /locus_tag="HA345_03700"
     CDS             2678..3829
                     /locus_tag="HA345_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84496.1"
                     /translation="MPEEDDLQGGEPKGMVRLSEKATVTDFVEWHESLEWIDHMLTDF
                     PHKIRLAISNWSGLNLLALSLAGLATIAGAWDLGIGELAGGGDYRFSGISIFNPESGL
                     FAISSSSFFLTIISGALWLGFIGVNWQIFPLMRSHAIALMASIVSVQVGMISAHAGAP
                     NFPFGTTASDFLGIFVGEAILVFILIVVIHRSVTETRDLHVQTRHQHPDPYEMERAKR
                     DHSLAGWTLAIFLFAVCINLAGFAGAAHVAQRPPFESSRMFSYLIYILFTMLSATLMM
                     LILWYPQFMLGGTTLTIESEASRMATAAIVDTSNDIGTCPSCGTPSAAHMTANGIIVS
                     ACNSPDCNGEGPVGQDCPICENPISAIIECVSCGTGASVSDLFPMEDAW"
BASE COUNT          965 a          939 c          829 g          885 t
ORIGIN      
        1 agggattgaa gttcgagcac ggacaccgcg ggtcatcgcg gaagaggcac ctaatgcgta
       61 caaagatgta gacgacgtga ttcgcctcac ttctcaagca ggactcgccc gacctgtagc
      121 ccgactgacc ccaatcgctg tcatcaaggg atgagaggtt aagctacctt tgaccggtac
      181 tcaatcttga tgatgtcatc ctgcacgcct tcctcaatca ggaatgacat gtagtcctca
      241 acaggttcac cgttgtatgt cacaacaatc tcgtgtgtat cgccagtatc gtaacccatc
      301 aagttggtct cagagaactc ctgaccccaa atcatgaacc aatggcgtaa ttcaatctca
      361 agagccgttg gtgtctcgat atgtaggtat gcagtggtat cctgatcacc tgtcgtacta
      421 tgaggcatag gagtatgtgt gtgaatgtaa cgcatacaag gagaattcaa cgggtcgtca
      481 ggtgaaccgg cgccgacgtc tgtcaacgga gaaacatgct gcatgacgcc atcctcatcc
      541 tcgatgaaaa tgtcaacatg aatgtgatcg tgacgaacaa ttgtgcctcc tgagtgacca
      601 cctgctaggc atccatcctc aattcgctca tcatctgttg tgacccctaa tccagggtta
      661 agaagggaca ctcctatgaa tccaagaaat gcgatagccg cagcaatcag tattgtcttc
      721 tcatccacca tgattactgg gaggcacacg agtgttttca aacgaacggc tagaaaacat
      781 cacaaatgcc cacactcaaa ggcaccccat tctggtggga tgacgcaaaa cgacatcttc
      841 gggatgtgga ttcagagatt ggcagaatca tagattgtgt agaggagcca tcacttatcg
      901 gtgagggaga tatcgtcaga acaatctgca acgccgtcgt ggggcagcag atctctgcta
      961 ttgcagcaga tgctatctgg aagcgactct tggattattg cggcggaact ttcgatccaa
     1021 atgccattac aaaaatcaca gaagaagatc agaagaaaat tgggatttca cgatcgaagg
     1081 gacgcactct cgcaggcatt gctgaaattt cggatcatct ccaagacatt gaatggtcca
     1141 aaatgagttc cgaagaagtc gttggagaac tccggccact atggggtatt ggcccatgga
     1201 caatcgatat ggtacggata ttctccctcc tagatccgga tgtactacca ataggagata
     1261 ttggagtcat tcgttgcatt gaggcgatgg aagggagagg acctcttgaa atcaaagaaa
     1321 ttgaacagcg tgctgaaatt tggaagccgt ttcggacctg tgccgtatgg tacctatgga
     1381 ggcaacacga cgaatcgccg gtgcaatatt gaacatgaat tacatgctga aacggcgctt
     1441 aggctgatta ggaattgtag gtgcagctcc agactggata ccatctgctt cctccatgat
     1501 aatcgtaagt agtgtatgca caagttgacg aagatcctca acctctgact tgagttcact
     1561 cattgatgcc tctacgttct tttccttgcc tctcggcttc atctgcactg tcatttccat
     1621 cccatctgag gacgttgtcc tcgaggctta cgcccctctt tcagggtcta taaactagag
     1681 agattgttca ttcctgatat accgtttcta acagaaatgc gaaatcgccg aaacgctcta
     1741 ggagagccac tggcgagaat tgaactcgcg acctacgcct taccaaggcg tcgctatacc
     1801 cctaagccac agtggcagcg cctccacgaa tcgggacctc ggtttaatcg ctacggaacg
     1861 tactcattga cattaacagc atttcatata cggattcaaa cccacatcaa ccatgattgc
     1921 accagagacg ttgatattca cacttgctgg aatcgccctt accctctcgg cgattttggt
     1981 tgtcaaaata atacaaaatc aaccaaaggt cacccctaat ccttggaaaa tacccccaat
     2041 gaatccggcc agacaacgga caagagtaac ccaaaaaacg cttactccac ccccgcccca
     2101 gatgtttaga caacgctgat aactcagatt tagatcatgt atcaccctaa tgtaaaccaa
     2161 agcggtagcg tgaaaaccaa aacctgactc ggagcacttg ccgccgagat cgcatagcct
     2221 ggtattgcgc atgactggaa atcatgtggg attttccctc gggagttcaa atctcnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnggaaa tcatgtggga
     2581 ttttccctcc ggagttcaaa tctccgtctc ggcgccatca ttgcatacac agtacagtcg
     2641 gcggtgcatt catgaccggc cttcacatga cccattcatg cccgaagagg acgacctcca
     2701 aggcggtgag cccaagggca tggtcaggct ctctgagaag gctaccgtca ctgatttcgt
     2761 agagtggcat gagagccttg agtggataga ccacatgcta accgatttcc cgcataagat
     2821 taggttagca atctcgaact ggtcaggcct caatctactc gccctatcac tcgctgggct
     2881 cgcaaccata gcaggagcat gggacttggg catcggtgaa ctcgctggag gaggagatta
     2941 ccgtttctcc ggcataagca tcttcaatcc tgaatccggt ttgtttgcaa tcagttctag
     3001 ctccttcttc ctcaccatta tttctggagc cctatggtta ggattcattg gagttaattg
     3061 gcagattttc cccctaatga ggtcccatgc aattgctctg atggccagca tagtcagtgt
     3121 ccaagttggc atgatttcag ctcacgcggg tgcaccgaac ttcccgttcg gaaccactgc
     3181 ctctgatttc ctcggaattt tcgtaggaga agcaattctc gtattcatcc tcatagtcgt
     3241 aatccatcga tctgtgactg aaacccgaga cttacatgta caaactcgac atcaacatcc
     3301 agatccatac gaaatggaac gagcgaagcg agaccacagc ctcgcagggt ggacattggc
     3361 catcttcctg ttcgcagtat gtatcaacct agcaggtttt gcaggtgcag cacatgttgc
     3421 gcaacgtccg ccgtttgaat cctcacggat gtttagttac ctcatataca tcctcttcac
     3481 tatgctctct gcgactctaa tgatgctcat cctatggtat ccacaattca tgcttggcgg
     3541 caccactctg accatcgagt ctgaagcatc aagaatggca actgctgcta tcgtagacac
     3601 ctcaaacgac attggcacat gcccttcatg tggcacgccg agtgcagccc acatgactgc
     3661 aaatgggatt attgtctcag cttgtaactc gcctgattgt aatggagaag ggccagtcgg
     3721 ccaagactgt cctatctgtg agaatccaat atctgcaatc atagaatgcg tatcctgcgg
     3781 cacaggcgcc tcagtatcag atctcttccc aatggaggat gcatggtaat ggaccctaaa
     3841 acaatccgca atcagatacc ctcgctacaa ggcgacagcc caatctacct agacaatgca
     3901 tgtgttac
//
LOCUS       DUKB01000108           22828 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_35322, whole genome shotgun sequence.
ACCESSION   DUKB01000108 DUKB01000000
VERSION     DUKB01000108.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 22828)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 22828)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22828
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_35322"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="HA345_03705"
     CDS             complement(<1..227)
                     /locus_tag="HA345_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84497.1"
                     /translation="MSSDWDENGMEECDLLALPRCSQEATLPSEEEVIERLCDSGILS
                     DSKVRNALKMSSRSLAIWPLPPGLTIDSFGAS"
     gene            complement(316..1092)
                     /locus_tag="HA345_03710"
     CDS             complement(316..1092)
                     /locus_tag="HA345_03710"
                     /inference="COORDINATES: protein motif:HMM:TIGR01460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HIH84498.1"
                     /translation="MDASLQGIKMVLLDLDGTIHLGGIPIPGALEFIQRCRMNSIATI
                     FLSNNSSCSVKQYVEKLRGMGIKAREEDVLLSTHDCIRWLQQRGWMKIHCFGTEGMRS
                     MMEGAGFECTNNGVDCVVIGYHNELVYSELQQVAELLHKGVPLVATHPDIVCPSPTGG
                     LPDVGSILAMFEASTGITPTIITGKPRPEMILERLKEEGIDPSNVAMIGDRIYTDIAM
                     ACAANVHSILVLSGEATRGDLTNSTIQPTLVVDSVDVLLR"
     gene            complement(1102..2445)
                     /locus_tag="HA345_03715"
     CDS             complement(1102..2445)
                     /locus_tag="HA345_03715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HIH84499.1"
                     /translation="MGLDWSAPIDTGPLPDDGENFDVIVVGGGPGGAAAASYAALAGN
                     KVLLIEKAIWPRDKICGDAVGGKSLRHVKELGVKEMIEVTPHFRVTGMMFSSPNGKQV
                     TIPLPKDDVAKREAGYALPRLQFDYMMFLKATELVRDAGGKVVQGTSVSNVHHDETSL
                     KITGVTIEGDSNSTHMAPLTIGAGGYLCPVAKKIVEELNLEKLRDEKHYCGAYREYWT
                     GVKDVGDGEGSIELHFVDDVIPGYWWIFPVNENVVNVGIGMVNAERRKQTGIKKSLKK
                     LQHYLIHEHPRFKERFADATLVKGSGKGWELPFGSPRKGSALQPRRTAMAGAICVGDA
                     ASLVDPFSGEGVGNALLSAKLAISLFDREAHSEGLPAEVADEYMVRLWEELGPELSNS
                     FKIQRIVRRKRLMNLFVRKAAKRPALQEALTDALASKEAQKKLHNPLWLARNILL"
     gene            2527..2844
                     /locus_tag="HA345_03720"
     CDS             2527..2844
                     /locus_tag="HA345_03720"
                     /inference="COORDINATES: protein motif:HMM:NF015077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HIH84500.1"
                     /translation="MAVVKMVTTLPGDWKEFEVGEWAHTLVENLVVACIQIERIRSMY
                     RWDGEVTSEDEWRLMMTTTTEKAPILAKLIEKKSPYDTPQITWTTVDASDSYSTWTEE
                     VTK"
     gene            2841..3449
                     /locus_tag="HA345_03725"
     CDS             2841..3449
                     /locus_tag="HA345_03725"
                     /inference="COORDINATES: protein motif:HMM:NF024937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4126 domain-containing protein"
                     /protein_id="HIH84501.1"
                     /translation="MNGFELFIAASLGIGLAAASGFRIFIPPFLYGAAARLDYLPSAI
                     PASGLQDWMASDIGLVVLGLATLIEIIAYYVPWLDNLLDTIASPAAMLSGALLMSSSL
                     GDSDPIIRWGLSIIAGGGVSGTVQVSTVALRAMSTATTGGLGNPIVSTVEAGACIICT
                     ILAVLLPIIALILVIVSLGFTGRWLLKRRQEKRKSPSLVEIP"
     gene            3466..4185
                     /locus_tag="HA345_03730"
     CDS             3466..4185
                     /locus_tag="HA345_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84502.1"
                     /translation="MSWDWEWASRIERRIAIDELMASLVELVHEIESTLGESPWAIDP
                     IIQAGLKSTPEGQKIREMFEEKGIPIEAITQLQSNVMWNIVYDGLSHLLSKEGESRTE
                     SKCFHALQMRFEKTDSIIRFMGYKVGNKQEDTSRRDVIKALFASDRLSKETMEKLLDS
                     IDSEDGDSECLDGFEVGMSVMKKSGTDTGFTGWPSFAGKDEHPIIERIDTSDSTLLLK
                     FKDTSWWINASLVEPSDVIVN"
     gene            4277..5443
                     /locus_tag="HA345_03735"
     CDS             4277..5443
                     /locus_tag="HA345_03735"
                     /inference="COORDINATES: protein motif:HMM:NF013237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HIH84503.1"
                     /translation="MSDEMRFPTRAVHEGTHHADGAVNTPVYLSSTYKLDEERYAGWA
                     AGAQHTLLYSRLSSVNSEVVSKKIASLEGAEDGEMFSSGMGAITTVLLGLLSRGDHVI
                     ASPDVYGGTYGLMTEDLPRFGIEVTLADIRDPSSFEAAIKENTKMLYSETLTNPNLKV
                     CNLPEIARIANENNLISVVDNTFVSPWATRPIEMGHDLVIHSTTKYLNGHSDHIGGAV
                     VGSKDLIAQVFAKKIHFGTSPDPHACFLLERGIRTLHARMPIHASNAATLAERLESHP
                     AIERVVHPSLSSHPDYEIAKHVMPNGTGMLGFVVKGGDNAAMTFMSQLKIIFEATSLG
                     GVESLIEVPATSSHMAVPEEVRIAAGISPGFVRMSVGIEDVEDIWNDIHQALEA"
     gene            complement(5444..7138)
                     /locus_tag="HA345_03740"
     CDS             complement(5444..7138)
                     /locus_tag="HA345_03740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84504.1"
                     /translation="MAGPGQVRFPGDDKRRKLRMKGIKKASDSIQKRLRKNLDALLED
                     PSSILPTRHPKGVFPRRDPLKKTQKEVQRVTDKRNNLKWLQRRMRKRRGDVPARALAG
                     TLAAAHEEAFDTVSIFQNPAYGRHSFVRRGMAAPTDLASMQNFHDIPLRLLLWRDHAK
                     AGIWFFGSRAEIVCTGTKPLIPDGWIDEGLKQAPINLQKEGRVWFTSGLTVEEVEGRK
                     QNKDGWIRFEFNDGTLLGISAASLQSLEESLIGGISLRMLPPKISAVTEIEWIWAPEG
                     WGDDRGVSEEMKEAGQEILTAWTDLTLKDKEVVERLKGAVTNSIDEGFVLGTMWFEEF
                     EEGISAIEGTDLEKEAIQCALSNINAGLHVRRDGVALDSPDDVIRLEMRAGHDILIAL
                     WDDWGHTILEEMFGIVGEKADDIHAKQMKRKQGFNAFLKGLSKDRQATSKLESFPWSN
                     TVLPSPLDLLHDLVRKGHTDGLGRTVSMVRKRKVINDAAMGWAWLVAHDRDGSEAWRF
                     DQVARDKGGDWARAVSNLWQVSERLISGNGKKSDYIDAMGKVAAAASLQTDLPDDE"
     gene            complement(7170..7967)
                     /gene="dph5"
                     /locus_tag="HA345_03745"
     CDS             complement(7170..7967)
                     /gene="dph5"
                     /locus_tag="HA345_03745"
                     /EC_number="2.1.1.98"
                     /inference="COORDINATES: protein motif:HMM:TIGR00522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine synthase"
                     /protein_id="HIH84505.1"
                     /translation="MDSSGLFLIGLGPGDLALMTRRAIDMLQDMDERYLEGYTATLPL
                     TQENELENLVGPWKRVMRPQIENPREIIEMAKSLKVAIMVVGDPMQATTHVDLILRAR
                     ENGVKVTIVPGISATTLAISSSGLQSYRFGRQVTLPYAYGDYLPTSPLRYILDNRLRN
                     LHTLVLLDLDPTGLGIESPIHMSPSVARQILMQMAERWSGENEEVNVSAWNVVVLSDL
                     GTAQGHVCSTIIEEMNGMESGRIHCLILPAEMDNHEQMVFDSMRYHA"
     gene            8049..9182
                     /locus_tag="HA345_03750"
     CDS             8049..9182
                     /locus_tag="HA345_03750"
                     /inference="COORDINATES: protein motif:HMM:NF014527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84506.1"
                     /translation="MTQQTIDILRESGWLDTEHRIRPYDDGHILIPLNDNAPSELPPA
                     FVNLLIIDAKPILSKSRESWQSRFTELVGEGVLENTIITKSHEILGDLLIQRYDEVNE
                     QYLSAFIQSKMEMHPRIRLMLIDHGVKGEFRIRDLQPIAVRTDRLIWGEDLMDLMDLE
                     SNILDPTTDVPENGLRLRLDPSRVYFSSKLQYERQNTTKELSLFSAELGRPINICDPF
                     CGVGPAIAPMLRQEGLVGELLVNDLNPDCLPFLFHNLKPLRILKPNFTPNNLVESTPG
                     IFVGCMDATQIPTKADQCGRWDALLVNLPHQTLSLLPALLPLLRPEGPMRICGWTIIP
                     ESEVIGLPDKLSKIVDCNVEDIEVRVRKQFNVTDMLTAFIVRR"
     gene            complement(9184..9256)
                     /locus_tag="HA345_03755"
     tRNA            complement(9184..9256)
                     /locus_tag="HA345_03755"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9220..9222),aa:Asp,seq:gtc)
     gene            9378..10217
                     /locus_tag="HA345_03760"
     CDS             9378..10217
                     /locus_tag="HA345_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84507.1"
                     /translation="MGGSGLFGASSPPPMAHPPSPNAEDSSPIPSTSVVDEPPSSQGN
                     EMDAAIMHLEAQNAKLRSALSSTTADLVASTAAPVPPIVGEGFVLSALDLSSIIRTGR
                     LMHLDGLVRTGTGAITMLNPDSPGVVHMTREGATLSSLTEHAIISAPLGVDAPNGAPV
                     EHHLLYVLLAQQSLNNPGRAATILSDSPFSVAGSKNPDAFVLDAEKTGIGRVAIIDDG
                     PVEQMIQEIGEAFRDIGGNAIVVRNRFALGFGLDVESAMQALSTLEANMQRHVLRWID
                     YRN"
     gene            10258..10854
                     /locus_tag="HA345_03765"
     CDS             10258..10854
                     /locus_tag="HA345_03765"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP synthase subunit A"
                     /protein_id="HIH84508.1"
                     /translation="MGEGTAPLVVDVIDNGGQWTHREWRMLRYMGVDTQILPNDTPVD
                     KLRRVDGLILSGGATRVGLTGELGNCGEYLEIAVPILGICAGHQFMARFYGGDAGAAP
                     APEFGAAQIQLVNGGGHIFEGTPDEQQVWESHNDEVTVLPPNFQITASSESCEVQAME
                     NDAGDRFGLQFHPEVDHSEYGVKMFENFIRICENMCNL"
     gene            10893..11045
                     /locus_tag="HA345_03770"
     CDS             10893..11045
                     /locus_tag="HA345_03770"
                     /inference="COORDINATES: protein motif:HMM:NF015561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit P"
                     /protein_id="HIH84509.1"
                     /translation="MVEVDYRCLRCGHMIPIDTMGETSTLQCKNCGYRIFRKPRRGGH
                     KDLIAE"
     gene            11090..12226
                     /locus_tag="HA345_03775"
     CDS             11090..12226
                     /locus_tag="HA345_03775"
                     /inference="COORDINATES: protein motif:HMM:NF020131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84510.1"
                     /translation="MTLWLVHHAPTRFADLATPERIRNALQSASIEGDPPHLLISGPS
                     GCGKTAAWRLVARQVLGPGWKATHHVLQARDLSGSQNAMKRFEEFLKSGSADGGSLAS
                     SSSLDAFDRSLWTADDNDPPPSGLEIDLSDGRIPISRLIIIEDADHLGMKRQAYLRRM
                     MERSGHTSRFILVARSPSRIIDALRSRTRSIRLPSPERDTIEATLRKIVDIEGVQVSD
                     GVFGDVVHISNGDLRKAVFTLDLLVHRGLAEDREAVVRLVNAVTLQTGRHMVEMALRG
                     RVVEWKMENDGRRRKRVSVGAYGELDRMLREHALDGEDIIHQVHMAITSPRLPVPNNL
                     RTDLLEALALTEISMGNTIDSRIHLEDLLHRFAEIGRNHGLSIA"
     gene            complement(12230..12304)
                     /locus_tag="HA345_03780"
     tRNA            complement(12230..12304)
                     /locus_tag="HA345_03780"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12267..12269),aa:Arg,seq:cct)
     gene            12379..13950
                     /locus_tag="HA345_03785"
     CDS             12379..13950
                     /locus_tag="HA345_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84511.1"
                     /translation="MTEEDSLDLRDTVPLALPTPDRPEETQSLDEVERDKEKRTDKRR
                     NTAVNFAQSTPLRLLRLTLGPSLMVLLIVVMVFPDQVDAQWTGFAMICTSIIILLPPT
                     IAAEMQFITSENDFGPNKGAEQLSLNSFPGAERIRSMIRENRLNERIRMMATTVVGTL
                     VMIQQYFLVGGPGNIVIMMAAVLLTAVTIAQTISLERTIQMRSLEFKYLPFHAPTQHS
                     SQMHTVLSDLIEAHMDPDSASQWSAWLDELKPSIRNKLPPSLARERIVQAVYLSTMTD
                     KDGVGNWKLNNILTSIVRREMRDWIMAEPSSNPDLQDDEEIASKLPFNISSLRRLLEH
                     TEAWQPGLFRIIRRVRNDILTGDNSLVDSEWRMDHDLPLACPDGQGDLFLMVHNFGER
                     EETVEVEVVVPGGLPEVQTFRVTPQPTPQLPAAIPLDSSSMTETLADRLSILMERGLV
                     LWIGLAWSPKVRGRHPVQIHLRREGGETISSLVLSTEVQQRSGGAGSTQVRMRRASSL
                     GIEALRDVRDSLKMR"
     gene            14019..15509
                     /locus_tag="HA345_03790"
     CDS             14019..15509
                     /locus_tag="HA345_03790"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013086.1,HMM:NF014907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HIH84512.1"
                     /translation="MESWDVIVIGSGVAALRAAIAALDAGATVSIFDDAGPGSAQARA
                     DDTGIAASLAESDSNEHQQDTATVGKGIETTVSNSRCASSVSTLIELERWGLNLRRDG
                     SGAPTLSSQPGHRTPRVATVGDVTGRETLRILEEQCMKRGIPRKHDFRPLTVVTENQR
                     VRGIVILDIQTGIIAPIQAKSVILAGDGHDGLWVENGSSGSKTALASRSGAMLTGMEF
                     VGWHPMMVKDSGMFLSLALLDAGACLRKANGDDIELVGGLTESCRSLADEEYVLDARS
                     VPNSLRPWFNTSAQHITDRFGIDLWSTVIPLTPAPRYSIGGVAVDVEGRALVSENLWL
                     TGLYAAGASAASGMHGSDILAGNWTLDALLSGEGAGTSAGQWATSAKHGGRDLMMDAA
                     FNSEAQIEAMSEVKDGMTVAAVTASIRRTMMAHMGLIREEKGLQSVETIIDDLASSPI
                     RLSDDSQIMNMELIAALDASLMLDLAQASISAAKARKESCGAHYLI"
     gene            15541..16440
                     /locus_tag="HA345_03795"
     CDS             15541..16440
                     /locus_tag="HA345_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84513.1"
                     /translation="MDRKGRDPRLNALEEDFFASANRQPPNHSRARDDGMRRQQHVRV
                     VFEKSNNSSSAFLRGFMNPSYYSAPPLHHEGSFWHFSRKEINDLTLATLAFALALALM
                     RVGGMFGILNSGASPFALIIEMAIWGTLYIFSLGPAFLLHEMAHKFLARHYGCWAEFR
                     ADPSGLRMGVLIAALLGFVFMAPGAVMVAGNITKEQNGKIALAGPISNLVLYSVGFVI
                     GGLLLGLSDAAIIAAFVQAWLWGNSILAAFNMIPLGPLDGLKVKRWSEPVFWIFFIGT
                     IGLAFGTLTGQITPYLELISSLI"
     gene            16558..16977
                     /locus_tag="HA345_03800"
     CDS             16558..16977
                     /locus_tag="HA345_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84514.1"
                     /translation="MTVERDDVDDEDDCNEEAPEISNWAPSDEQSEYQKEAMSAVDDA
                     MKQLSRLRRVANKHYTEDHGVVRLKGMVFEVEGSSRRTDTVIRLTHHRNIIAIVTDID
                     GEISSLSFEVVGSAIMIRLPPPRVVEIHEVKPKGGCC"
     gene            complement(17023..18126)
                     /locus_tag="HA345_03805"
     CDS             complement(17023..18126)
                     /locus_tag="HA345_03805"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012575.1,HMM:NF013044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic ring-hydroxylating dioxygenase subunit
                     alpha"
                     /protein_id="HIH84515.1"
                     /translation="MWRQFFDARSARAGMSGPLIHPDITKAHTLPSRFYTEKESFHNL
                     LDDMRDCWYFAAHSSQFTEHNVIPLIDIEGMLGEALILTNSDKIRCLSNVCTHRGMLV
                     ATEPSNSNTLQCKYHGRTFGMDGCMKNMPEFQDVEGFPSASDDLPRFPVAEWKGLQLV
                     GGDRYLKEAIAELESRLGWLDIDSYNHDKSRFRSYEIEANWALYVDNYLEGFHIPFVH
                     GDLHGVLDSNEYRTELFEGGVLQIGIARDGEPHFEPPENSAEYGENVAAYYYWFYPGL
                     MLNFYPWGLSVNQVIPLSVDKTRIVYHGYVGNPELLGKGAGGDLDKVEMEDQEIVEAT
                     QRGVSSKSYDRGRYSPEMERGVHHFHRIMTHNQ"
     gene            complement(18156..19919)
                     /locus_tag="HA345_03810"
     CDS             complement(18156..19919)
                     /locus_tag="HA345_03810"
                     /inference="COORDINATES: protein motif:HMM:NF016289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HIH84516.1"
                     /translation="MGARGSAIALCLLMLASPLAGCFGEIDDGADADDLMVGVATFQG
                     GVFQNVLFTSSDDISVFIPYLIQDSVTGLVQNSTVIDLASGESIEIRILAPPRIDFAL
                     MMIGDFGRENWPIREMNESWTTWLQRNGNAGGGAAIIRVAAEGNSTFDTVNSSAEDGG
                     SVAIKTLDIVRQEMAVYDKGQGASHSTGLVSGRDVYNTLVLLTDDTPDPVSWDGRAGY
                     WDRWAGQGNPAYEEAAQWLHLELESYGLEVMDHRFEFTDIFGNQNPESYNVCGYSWGS
                     VYPDEWMVFGAHFDVAPPVNGVGLIPALHDPHITGERSYGTRVGAYDNGAGTSMVLDT
                     AAALAEFSTRRTMVFCLWSGEEGGKRGSSYWTDYYVTEDNPDVTIVDYINLDMAGVNW
                     PGGGGAPCGDEHGGGDAGCDPQPEVDPDGYPKDEEVWPMRVYIGPSENHDSVDQPGMV
                     GLANWIGSDALGVEEQMGILVGTGHSEDTWKVDAWQEMDRPEIIVYEDTTARSDHASF
                     QAIGTTTIGFGGLVDGYWCYHQTCDTLEEMEDWMDTTGKDYGEENTGTANVVNSLDMI
                     TWWALYSFFHMDEKPVLNTLS"
     gene            complement(19947..20645)
                     /locus_tag="HA345_03815"
     CDS             complement(19947..20645)
                     /locus_tag="HA345_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84517.1"
                     /translation="MGALLVYLSSSAERGEYVRREILYAATIAIGLPISRYFSEWPVN
                     LWCIGLFVVLFIRGERKERIEMMAVLAFATPMELFFSEIWLIYEYQRNLMPLYVPVGH
                     WFLFDLGRRIANHLPDGKKVAAGALVPFIPLTIWMAFDGIDTSGLFLLALMFGFVRFG
                     PAPMLYAVMAWLALAMELWGTGLGTWTWDTEVPWTSLTAWNPPLLCGAFYGLGDLLVN
                     LTTRQIDDSTLPLD"
     gene            complement(20608..21363)
                     /locus_tag="HA345_03820"
     CDS             complement(20608..21363)
                     /locus_tag="HA345_03820"
                     /inference="COORDINATES: protein motif:HMM:NF014344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84518.1"
                     /translation="MRKISEDYGDALSTYFGTKSPDSIAAKDQHRGYVGALRSCGVEV
                     EILDALEGHPDCCFVEDTAIVFEDAVVICNPGHASRAGEVDSIAERLSNDFKIQRMPP
                     DAMMDGGDVIYTGSKILIGLSTRTNAIGAEFLSKFAAERNISTQIIEVPKTTLHLTTV
                     CSVPRDGTIIAAEGHLRPDQLESFDEVIWVPVEEAYAANTIAFEDGRIIISDGFPITI
                     ERIRKAGFEPILIAMSEIMQADGSLTCLSLFIG"
     gene            complement(21440..21802)
                     /locus_tag="HA345_03825"
     CDS             complement(21440..21802)
                     /locus_tag="HA345_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3147 family protein"
                     /protein_id="HIH84519.1"
                     /translation="MTWVELLVKGLFSGGIIVGASEVAKRSIVFGAVIISLPLSSIFS
                     MIMLHRDGVNSEDIAAYAESILYLVLPALALFAIMPILLRRGWDFWPSLGLGIMATLA
                     LYGAGIMLATRFAIDGQA"
     assembly_gap    21889..22213
                     /estimated_length=325
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    22350..22696
                     /estimated_length=347
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         5830 a         5517 c         4998 g         5811 t
ORIGIN      
        1 gaagccccga aactatcgat agttaagcca ggtggtagtg gccagatcgc tagactccgg
       61 ctcgacattt tcaacgcatt acgaacctta gaatcactca ggattccact atcacataga
      121 cgttcgatta cttcttcttc ggacggcaac gttgcctctt gagagcatct tgggagtgca
      181 agcaggtcgc actcttccat gccattttca tcccaatctg aagacacgta gcgtatggct
      241 tcgcggaagg tattgaacac cactggtaac ttctctattc tcgatacgat ttcatctttg
      301 aattaggtta gccagtcatc taagaagtac gtcaacagaa tcaacaacca atgttggttg
      361 aattgttgaa tttgtgagat cacctctcgt tgcttcacca cttaggacta gaatactgtg
      421 cacattagcg gcacaagcca tcgcaatatc tgtgtaaatt cggtcaccaa tcatcgcaac
      481 attcgatgga tcaatcccct cctctttcaa tcgttcaaga atcatttcag gtcttggctt
      541 acccgtgata atcgttggag ttattccagt ggaggcttca aacatagcta atatcgaacc
      601 cacatctggc aatccccctg taggcgatgg acagacaata tcagggtgtg tagctaccag
      661 aggcactcct ttgtgtagaa gttcggcaac ttgttgcaat tcagaataaa caagttcgtt
      721 gtggtaacca atgaccacac aatctactcc attgtttgtg cattcaaatc ctgcaccttc
      781 catcatagat cgcattcctt cagtgccgaa gcaatggatt ttcatccaac cacgttgctg
      841 gagccagcga atgcagtcgt gtgttgagag aagcacatct tcttctctag cttttattcc
      901 cattccgcgc aatttctcta catattgttt tacagaacaa ctagagttgt tggataggaa
      961 gattgtagca atactattca tcctacatcg ttgaatgaat tccaaggctc ctggaattgg
     1021 aattcctcct aggtggattg ttccatctaa atctagtagg accattttga tgccttgtag
     1081 actggcgtcc ataggatgcc ctcacaacaa aatgttccga gcgagccaaa gaggattatg
     1141 caattttttc tgcgcctctt ttgaggctaa agcatcggtt aacgcctctt gtagggccgg
     1201 gcgctttgct gcttttcgta cgaagagatt catcaaacgc ttccttcgta caatccgctg
     1261 aattttgaat gaattcgaaa gctcaggccc taattcctcc cataagcgca ccatgtattc
     1321 atccgcaact tccgcaggca aaccctcaga atgggcctcc cggtcaaata gggaaattgc
     1381 tagtttagca gatagtaagg cattcccaac cccttcacca ctaaatggat caaccaaact
     1441 tgcagcatct cccacacata ttgctccagc catagccgtg cgccgtggtt gcaacgcaga
     1501 tccctttcta ggactaccaa acgggagctc ccatcccttc ccactacctt ttactaaagt
     1561 cgcatctgca aaccgctctt tgaatcgagg gtgctcgtga atgagatagt gttgaagttt
     1621 tttgagtgat ttcttgatgc ctgtttgctt acgtctttca gcgttgacca tacctattcc
     1681 aacatttaca acattttcat ttacgggaaa aatccaccaa tatccaggta ttacgtcgtc
     1741 aacaaaatgg agttcaatag atccttcgcc atcacccaca tctttgacac ccgtccaata
     1801 ttctcgatat gctccgcagt agtgcttttc atctcgcaat ttctcaagat tcaactcttc
     1861 tacaattttc tttgcgacgg ggcaaagata tccacctgcc ccaatcgtta gtggagccat
     1921 atgagtagaa ttactatcac cttcaattgt tacgccagta atcttgagac ttgtttcatc
     1981 atggtgcaca ttagaaactg aagtgccttg gacaactttt ccacccgcgt cacgaactaa
     2041 ttcagtcgct ttaaggaaca tcatgtagtc gaactgaagt cgaggaagtg catatcccgc
     2101 ctctctcttt gcaacatcat cttttggtaa cggaatagtc acttgttttc cgtttggact
     2161 actgaacatc atcccagtca ctcgaaagtg aggcgtgacc tcaatcattt cctttacacc
     2221 gagctctttg acatgacgga gagatttacc tccgactgca tctccacaaa tcttgtcacg
     2281 tggccaaata gccttctcaa tgagaaggac cttgtttcca gcgagcgctg catagcttgc
     2341 tgcagcagcc cctcctgggc caccaccaac cacgatcaca tcgaagtttt ccccatcatc
     2401 tggaagcgga ccagtatcga tgggagcact ccaatccaga cccatgtaac actctctgga
     2461 gtgatgggcc ttcaatcatc ccactaaccc gataggttca acgcgcgtgg ggaatggtgc
     2521 gtattcatgg ccgttgtgaa gatggtgacg acacttcccg gcgattggaa ggagtttgag
     2581 gtaggggaat gggcgcacac tcttgttgaa aatttagttg tagcatgcat acagatcgaa
     2641 cgtattcgtt cgatgtatag atgggacgga gaggttactt cagaagatga atggcgtctt
     2701 atgatgacaa caactaccga aaaggcccca attctcgcta aactcataga gaagaaaagt
     2761 ccctatgata cccctcaaat aacttggacc acagttgatg catctgactc atattcaact
     2821 tggacggaag aggtgactaa atgaatggat ttgaactatt cattgccgca tctttaggaa
     2881 taggtcttgc agcagctagc ggtttccgca tctttatccc cccatttctt tacggcgctg
     2941 ctgcccgttt agattacctc ccatcagcca tccccgcatc tggcttacaa gattggatgg
     3001 catcagatat cggattggtg gtacttggat tggccacatt aatcgaaata atcgcatatt
     3061 atgtgccttg gctagacaat ctattggata cgatcgcttc acctgcagcg atgctttccg
     3121 gagctctact aatgagttca tctttaggag attcagatcc gattattcga tggggtctga
     3181 gtataattgc gggaggtggg gtgagcggta cagtacaggt gagcacagta gcattgcgtg
     3241 caatgtcaac agcgacaact ggaggacttg ggaaccccat tgtgtctact gttgaagctg
     3301 gtgcatgcat tatctgtaca atactagcag ttctcttacc aatcatcgca ctaattcttg
     3361 tgattgttag ccttggattt acgggcagat ggctcctgaa acggagacaa gagaagagaa
     3421 aatctccttc actggttgaa ataccctgaa tactacatgt tttgcatgtc atgggattgg
     3481 gaatgggcaa gccgaattga gaggcgaatt gcaattgatg aactaatggc gagccttgtt
     3541 gaattggtac atgaaatcga atccacactc ggcgaatctc catgggcaat cgacccaatt
     3601 attcaggctg gtttgaaatc cactccagag ggacagaaga ttcgtgaaat gttcgaagag
     3661 aagggaattc cgattgaagc gattacacag ctccaatcta atgtgatgtg gaacatagtc
     3721 tacgacggcc tttcccattt actttcaaaa gaaggcgaat ctagaactga gtccaagtgc
     3781 ttccatgcgt tacagatgag gtttgagaaa acggactcca tcattcgttt catgggttac
     3841 aaggttggga acaaacagga ggatacgagc cggcgcgatg tcattaaggc ccttttcgct
     3901 tcagatcgac tttcaaaaga gacaatggaa aaactcctag attccattga ttcagaagat
     3961 ggggattcag agtgtcttga tggttttgaa gttggaatga gtgttatgaa aaaatccgga
     4021 acagatactg gatttaccgg atggccctcc tttgcaggca aggacgaaca tccaattatc
     4081 gaacggattg acacttctga ttcgacactc ttactcaagt tcaaggatac gagttggtgg
     4141 atcaatgcgt ctttggtcga gccgtctgat gtcattgtaa actgattatc caaatccaga
     4201 atcacaattc cccaatcaat aacgtggaca gattcgttca agtccttcac cccttaccga
     4261 ttatcaaggc gaggttatga gtgacgaaat gagatttcca acacgcgcag tgcatgaggg
     4321 cactcatcat gcagacggag cagtaaacac tcccgtctac ctatcttcaa cttacaagtt
     4381 ggatgaggaa cgatatgcag gttgggcagc aggagctcaa cacacacttc tctacagtcg
     4441 tttatcctcg gttaattctg aggttgtctc gaaaaagatt gcatcgttag agggtgcgga
     4501 ggatggagag atgttctcaa gcggaatggg ggcgattact accgttctcc tcggactatt
     4561 atctcgaggg gatcacgtaa tcgcctcgcc agacgtctat ggtggaactt atggcctcat
     4621 gactgaagat ttaccaaggt ttggaatcga ggtgacttta gcggacatta gagacccttc
     4681 ttcttttgag gcagcaatca aggaaaatac gaaaatgctc tactccgaaa cactaacaaa
     4741 tccaaatctc aaggtttgca acctccccga aattgcaaga atcgccaatg aaaacaacct
     4801 catatcagtc gttgacaaca catttgtctc accctgggct acacgcccaa tcgaaatggg
     4861 acacgatctt gttatccata gcaccacgaa atatctgaat ggtcattcag atcatatagg
     4921 gggcgcagtc gttggttcca aagatctaat cgcacaggta tttgcaaaga aaatccattt
     4981 tggaacatcc cctgatcctc atgcctgctt cctcttagaa agaggcattc gaaccctcca
     5041 tgcacggatg cccattcatg catcaaatgc tgcaacactc gctgagaggc tagaatccca
     5101 ccctgcgatt gaacgggtgg ttcacccatc actctcctca catccagatt acgagattgc
     5161 taaacacgtc atgccgaatg gaacaggcat gctcggattt gttgttaagg gtggagataa
     5221 tgctgcaatg accttcatgt ctcaattgaa aattatattc gaggcaacaa gtcttggtgg
     5281 agtcgaatct ctcatcgagg tccccgccac ctcttctcac atggcagttc ctgaagaagt
     5341 ccgaattgct gctggaattt ccccaggttt cgttcggatg agtgtcggca ttgaggatgt
     5401 tgaagacatc tggaatgata ttcatcaggc attagaagct tgattattca tcatctggca
     5461 gatcagtttg gagactcgca gcagcagcaa ccttacccat tgcatcgatg taatcgctct
     5521 tcttaccatt tccagaaatc aatctctcac taacttgcca tagatttgat acagcccttg
     5581 cccaatcgcc acctttgtct cgagcaactt gatcgaagcg ccatgcttcg gatccatcac
     5641 ggtcatgagc aactaaccaa gcccaaccca ttgccgcgtc attgatgacc ttcctttttc
     5701 gaaccataga gaccgtcctt ccaagaccat cagtgtgacc tttgcgtact aagtcatgca
     5761 gtaaatccaa tggtgaaggt agtactgtat tactccaagg aaacgattct agcttcgaag
     5821 tggcctgcct atccttactc aatcctttga ggaaggcatt gaatccctgc ttacgcttca
     5881 tttgcttcgc atgaatatca tcagcctttt cgcccactat cccgaacatt tcctcaagga
     5941 ttgtatgtcc ccaatcatcc cagagagcaa tcaaaatatc gtgtcctgca cgcatttcga
     6001 gtcgaataac atcatctggt gaatcgagag ctactccatc tctacgtaca tgtagtccag
     6061 catttatgtt tgaaagagcg cattggatag cctctttttc taaatccgtg ccttcaattg
     6121 cagaaatccc ctcttcaaat tcttcaaacc acattgtccc gagaacgaac ccctcatcga
     6181 ttgaattggt aactgctccc ttcaatcgtt caacaacctc tttgtctttc aaggttagat
     6241 cggtccaagc tgtgagtatt tcttggcccg cttccttcat ttcctctgaa acccccctgt
     6301 catcacccca tccttctggg gcccaaatcc attcaatttc agtcactgct gaaattttag
     6361 gaggaagcat acggagagaa atacctccga taaggctctc ttcgagagat tgtagagagg
     6421 ctgcagatat accaagcaaa gtcccatcat taaattcgaa acgaatccaa ccgtccttgt
     6481 tttgcttccg tccttcaact tcctctactg ttagaccgga tgtgaaccaa acacgcccct
     6541 ctttctgtag gttgattggt gcctgtttta gcccctcatc aatccaacca tcaggaatta
     6601 gaggcttagt gcctgtacat acaatctcag cccggctacc aaagaaccag attccagctt
     6661 ttgcatggtc ccgccaaagc aatagcctca atggtatgtc atggaagttt tgcattgaag
     6721 caagatcggt tggcgctgcc atcccacgtc gaacgaaact gtggcgacca tatgcgggat
     6781 tttggaagat tgagacagta tcgaacgctt cttcatgcgc agcagcgagc gtaccagcaa
     6841 gagcacgagc gggcacatcc cctcgtcgct tacgcattcg ccgttgaagc catttcagat
     6901 tgtttcgttt atcggtaaca cgctgcactt ccttctgtgt ttttttcaat ggatctcgtc
     6961 gagggaatac accctttgga tgacgagtag gtaagatgga gctcggatct tcaagcaaag
     7021 catccaagtt tttcctcaaa cgcttttgga ttgaatcaga ggcttttttg atacccttca
     7081 tacgaagctt acgccgctta tcatcgcctg gaaatcgaac ttgtccgggc ccggccatga
     7141 tgtcgtcaac ccctcctcct gtttcacatc tacgcgtgat atctcatact gtcgaaaacc
     7201 atctgttcat gattatccat ttcagcaggt agaataagac aatgaatacg cccactttcc
     7261 attccattca tctcttcgat tattgtcgag caaacatgac cttgggcggt ccctagatca
     7321 gatagaacga cgacattcca agcactgaca ttcacttctt cattttctcc actccacctt
     7381 tctgccattt gcatgaggat ttgtctggca acggacggac tcatgtgaat cgggctttca
     7441 attcctaatc cagtaggatc tagatcgagt aataccaagg tatgcagatt ccgtaaccgg
     7501 ttgtcaagta tgtagcgtag aggtgaggtt ggtagatagt caccataagc gtaaggtaac
     7561 gtaacttgac gcccgaagcg ataagattgc agtccactgg aactaatggc taaagtcgtt
     7621 gcagaaatac ctggtacaat cgtcactttg accccatttt cccttgctct caggatcaaa
     7681 tcaacatgag tcgttgcttg cattggatca cctaccacca taatcgcaac cttcagcgat
     7741 tttgccatct caataatctc tcttggattt tcgatttgag gccgcatcac ccgtttccat
     7801 gggccaacaa gattctccaa ttcattttct tgagtaagag gaagtgttgc ggtataccct
     7861 tcgagatacc gctcatccat atcttgtaac atatcgatgg cacgccgcgt cattagggca
     7921 aggtcgcctg gtccgagccc aattagaaat aatccacttg aatccaccaa tcttcctccg
     7981 tcagcgtcaa gatgccgtta gcactggtta gagcgggtcc catgcgtcat ttgagcgtgc
     8041 cgtcgagcat gacgcagcaa acaattgaca ttttacggga atcaggatgg cttgatacag
     8101 agcaccgcat ccgaccttat gacgatggac acatcctcat tccattgaat gataacgcac
     8161 cctcagaact accgcccgca tttgtcaact tactaattat agacgcaaaa ccaattctat
     8221 cgaagagtag agaatcttgg cagtcacgtt ttactgaatt ggtaggagag ggcgtgttag
     8281 agaacaccat tatcacgaaa agtcatgaaa ttcttggcga tcttctcatc caacgttatg
     8341 atgaggtgaa tgaacagtat ctttcagcct tcattcaatc taagatggag atgcatcctc
     8401 gaattcgtct tatgttaatc gatcatggag tgaagggcga attcaggata agagatttac
     8461 aacccattgc agttcgaaca gatcgattga tttggggtga ggatttgatg gatttgatgg
     8521 atttagaatc aaatattctg gatccaacaa cagacgtacc tgagaatgga ttacgcctac
     8581 gtcttgaccc ctctcgagta tatttctcta gcaagctaca atatgagcgc caaaatacaa
     8641 cgaaggaatt gagcctattt tctgccgaat taggccgccc aatcaatatc tgcgatccat
     8701 tttgtggtgt tggcccagcg attgcaccca tgttgcgaca agaaggcttg gtaggagaac
     8761 ttctagtcaa tgacctcaat cctgattgcc ttccgttttt gtttcataat ctcaaacctc
     8821 tgcgtatatt gaaaccaaat ttcacaccca ataatttggt agaatcaacc cccggcatct
     8881 ttgttggatg catggatgct acacaaattc ctaccaaagc ggatcaatgt ggtcgttggg
     8941 acgcgcttct tgtgaatctt ccacatcaaa ctctgagttt attgccagca ttacttccac
     9001 ttctccgccc cgaaggtccg atgaggattt gtggatggac aatcattccc gaaagtgaag
     9061 taatcggact tcctgacaaa ctttcgaaaa tagttgattg taatgttgaa gatattgaag
     9121 ttcgggtacg taaacagttc aacgtaacgg atatgctgac cgcctttatt gtacgtcgtt
     9181 aggcgccccg accgggattt gaacccgggt cgcagcctcg acagggctgc atgataggcc
     9241 actacaccat cggggcaggc aatttgccca acaccaacct gtatataatc ggcttgatga
     9301 atcaagggat gatgtccgac gaggaaggca ccccccgcac accctcacga acatcgagag
     9361 gaagagcacg accatccatg ggaggatctg gcctatttgg ggcctcatcc cctccaccta
     9421 tggcacaccc accttcacca aatgcagagg actcctctcc cattccatct acctctgttg
     9481 tagacgagcc tccttcatct cagggtaatg agatggatgc agcaattatg catcttgaag
     9541 cccagaatgc taaactccgt tctgctcttt catctaccac agcggatctt gtggcatcaa
     9601 cagcggcccc cgtccctcca attgttggtg agggctttgt cctctccgct cttgaccttt
     9661 catcgattat ccgaacaggg cgtctaatgc atcttgatgg tcttgtccga acgggtactg
     9721 gtgcaattac aatgctaaac cccgattctc caggggtcgt ccatatgact agagaaggtg
     9781 caaccctatc ttcgcttacc gagcatgcaa tcatctctgc ccctctcggt gtagatgcgc
     9841 ccaatggcgc accagttgaa caccatcttc tctatgttct tctagctcaa caatctctca
     9901 acaatccagg tcgagcggca accattctga gcgacagccc cttctcagtc gccggctcca
     9961 agaatcctga cgcttttgtt ctggatgcag agaaaactgg aattggccgc gttgccatca
    10021 ttgacgacgg tccagtggaa caaatgatcc aagagatcgg tgaagcgttc agagacattg
    10081 gtgggaatgc aatagttgtt cgaaatcgtt tcgccttagg attcggcctt gatgtagaat
    10141 cggcgatgca ggctctttca acacttgaag cgaatatgca acgtcacgta cttcgttgga
    10201 ttgattatcg aaattgaaga acgccagatt caaggagcga ccttactgaa tgtggccatg
    10261 ggtgagggga ctgctccatt ggtcgtcgat gtcatcgata atggaggaca atggactcat
    10321 cgtgaatggc gcatgcttcg ctacatgggt gttgataccc aaattcttcc caacgataca
    10381 cctgtagaca agctccgtag agtcgacgga ctgatcctct ctggaggtgc gacacgagta
    10441 ggtcttacag gcgaactcgg taattgtgga gaatacctag agattgctgt accgattctc
    10501 ggaatatgtg caggtcacca gttcatggca cggttctatg gtggtgatgc tggcgcagct
    10561 ccagcaccag agtttggagc agcgcaaatt caacttgtaa acgggggcgg ccatattttc
    10621 gaaggcacac ccgatgaaca gcaagtatgg gaatctcaca atgatgaggt tacagtatta
    10681 cctccaaact tccaaattac cgcatcgagc gaatcgtgtg aggttcaagc aatggaaaat
    10741 gatgccggag atcgtttcgg tttgcaattt cacccagagg tagatcactc agagtatggc
    10801 gtgaaaatgt tcgagaattt catccgaatt tgtgaaaata tgtgtaattt gtgaaccgtc
    10861 gggttgaaga atacccccac ggtcgcgcaa ccatggtcga agtcgattac cgatgtctca
    10921 gatgcggtca catgatccca atcgatacca tgggtgaaac aagcacctta cagtgtaaga
    10981 attgtggata ccggattttc aggaaacctc gccgaggtgg ccataaggac ctcattgcag
    11041 agtgatttct aatcgttcag ttcaaggacc agcggattga acaccgtgcg tgactctctg
    11101 gcttgtgcat catgcaccaa ctcggtttgc ggatcttgca actccagaaa ggattcgtaa
    11161 tgccctacag tctgctagta tcgaaggaga ccctccacac ctcttgattt ccggcccaag
    11221 tggctgtgga aagacagcag catggcgcct cgttgctcgc caagtactag gtcctggttg
    11281 gaaagcaacc catcacgttc ttcaagcacg agatttgagc ggatcccaga atgcaatgaa
    11341 gcgctttgaa gaatttctca agagcggctc agcagacggg ggatcacttg cttcgagctc
    11401 aagcttagat gcctttgatc ggagtttgtg gaccgccgat gacaatgatc cgcccccttc
    11461 agggttggaa atcgacctct ctgatggccg tataccaatt tctcgcctca ttatcatcga
    11521 ggatgctgac catctcggca tgaagagaca agcatatctt cgtaggatga tggaacgttc
    11581 aggtcatact tcgagattca ttcttgtagc ccgttctccc agtcgcatca ttgatgctct
    11641 tcgatcaagg actcgctcaa ttcgactccc atctcccgag cgtgacacaa tcgaagcaac
    11701 ccttcgcaag attgttgaca tcgaaggcgt gcaagtatca gatggggtat ttggtgacgt
    11761 agtccacatc tccaatggag atttgagaaa agcggtcttc actctagatc ttcttgttca
    11821 tcgtggtctt gcagaggatc gcgaagcagt cgttcgtctg gttaatgcag tcacactcca
    11881 aacaggccga catatggtgg agatggcatt acgaggccgc gtagttgaat ggaagatgga
    11941 gaatgatggc cgtagaagaa agcgtgtttc agtaggcgca tatggagaac tcgatcgcat
    12001 gctcagagag catgcattgg atggtgagga cataattcac caagtccaca tggcgattac
    12061 aagtccacgc ctccccgttc ctaacaatct tcgaactgat ctccttgagg ctctcgcctt
    12121 gactgaaatt agcatgggaa atacaattga ttcacgaatc catctcgagg accttctcca
    12181 tcgatttgct gaaattggcc gtaaccacgg actgtcaatt gcttgaacac gggcgcggca
    12241 ggattcgaac ccgcggtccc cggcttagga ggccggtgca ttatccaggc tatgctacac
    12301 gcccaaaccc agcacaatcg cccccccttc ttgaaaggat gcgatgagat gaagggggtt
    12361 ggatgctgag caggtaatgt gaccgaggag gattcgctcg atctacggga cacagtgccg
    12421 ttggcactgc cgacaccaga tcgtccggag gagacccaat ctctagacga ggtcgaacgc
    12481 gataaggaga agaggaccga caagcggcgg aataccgcag tcaacttcgc acaatctacc
    12541 ccactccgtc tactacgcct tactctcggg cctagcctga tggtgttact catcgttgtc
    12601 atggtatttc cagaccaagt cgatgctcag tggacaggtt ttgcgatgat ttgcacatca
    12661 atcatcatcc tcttacctcc cacgattgct gctgagatgc aattcattac ttcggagaat
    12721 gatttcggac caaacaaggg agctgaacaa ctttcgttga actccttccc aggagccgaa
    12781 cgaattcgtt cgatgattcg agagaatcgt ttgaatgaac gaattcggat gatggctact
    12841 accgtagtag gaaccctcgt catgattcag caatatttct tagttggtgg acccggaaat
    12901 atcgtgatta tgatggctgc agttcttctg acagcagtta ctattgctca gacgattagt
    12961 cttgaaagga caattcagat gcgctctctt gaattcaagt atctcccatt ccatgctccg
    13021 actcaacaca gtagtcagat gcatacggta ttgagcgatc ttattgaagc gcacatggat
    13081 ccagattccg catctcaatg gtctgcttgg ctcgacgaac tcaaaccttc gattcgtaac
    13141 aaacttccac cctctcttgc acgagaacgc attgttcagg cagtatatct ctcgacgatg
    13201 acagacaagg atggtgttgg aaattggaaa ctgaacaaca ttctcacatc tattgttaga
    13261 agggagatgc gtgattggat tatggccgaa ccatcgtcaa atccagatct tcaagatgat
    13321 gaggaaatag ccagtaagtt accattcaat atctcttctt tacgccgttt actagagcat
    13381 actgaagcct ggcaacccgg ccttttcaga atcattagaa gagttagaaa tgatatcttg
    13441 actggtgata actcgctggt agattcagaa tggagaatgg atcacgacct ccctcttgct
    13501 tgtcccgatg gtcaaggcga ccttttcttg atggttcaca actttggtga gcgggaggaa
    13561 acagtcgaag tcgaagtggt tgttccaggc ggtcttccag aagtgcagac cttccgagtt
    13621 accccacaac ctactccaca acttccagcc gcaattcctc ttgactcctc ttcaatgact
    13681 gaaactctag ctgatcgcct ctctattttg atggaacgtg gacttgttct ctggattggt
    13741 ttagcttggt ctccaaaagt tcgtggccga cacccagttc aaattcatct tagaagagag
    13801 ggtggtgaga cgatttcatc acttgtactt tctacagaag tccagcaacg tagcggcgga
    13861 gcagggagta cacaagtcag aatgcggcgt gcaagtagcc tcggaattga agcccttcgc
    13921 gatgtgcgcg attctctaaa gatgcgttaa tcggttacac taacccgccg ccgcgtttat
    13981 gttgcgtcct tatctggaat gggttgcagg ttgaagccat ggagtcatgg gacgtcatcg
    14041 tcattggttc gggagttgcg gcattgcgtg cggcaatcgc agcattagat gccggagcga
    14101 cagtgagcat ctttgatgat gctggaccag gaagcgctca ggctagagcc gatgatacag
    14161 gaattgcagc ctctcttgca gaatcagatt ccaacgagca tcaacaagac actgctacag
    14221 ttggaaaggg tattgaaacc acggtttcca actctcgttg cgcatcatct gtatctactc
    14281 ttatcgaact tgaacgatgg ggccttaatc tccgtcggga cggatcagga gctcctactt
    14341 tgagctctca accaggacat cgaacacctc gtgttgctac agtaggagat gttactggac
    14401 gtgaaaccct ccgaattctc gaagagcaat gtatgaagcg aggaatacca cgtaagcatg
    14461 acttccgccc actcactgtg gtgaccgaga atcaacgagt ccgtggcata gttattcttg
    14521 atatccaaac cggaattatt gcaccaatcc aagccaagtc agtgattctt gcaggagatg
    14581 ggcatgatgg cctatgggtg gaaaacggct catccggctc caaaaccgct ctggcatccc
    14641 gttcaggtgc aatgctcact ggtatggaat ttgtaggctg gcatccaatg atggtcaagg
    14701 attctggaat gttcctttcc cttgctctcc ttgatgccgg ggcatgtctg cgtaaagcga
    14761 atggcgacga tatcgaactt gttggtggtt tgactgaatc atgtagatca ttggcagatg
    14821 aagagtatgt tctcgatgcc cgttcagttc cgaattcatt acggccatgg ttcaacactt
    14881 cagctcaaca tatcaccgat cggtttggaa ttgacctttg gtcaacagtc atcccactta
    14941 ctcctgcacc tagatactct atcggcggtg ttgctgttga tgtcgaaggt cgtgctttgg
    15001 ttagtgagaa tctctggctt acgggcctct atgctgcagg ggcatcagca gcatcaggta
    15061 tgcacggtag cgacattctt gccggtaact ggacattgga cgctcttctc agcggggagg
    15121 gtgccggcac gtccgcaggt cagtgggcta cctctgcaaa gcacgggggg cgcgatctca
    15181 tgatggacgc ggccttcaac tctgaagcac aaatcgaagc catgagcgaa gtcaaggacg
    15241 gcatgacagt ggcggccgtt acagcatcca ttcgtcgcac catgatggcc cacatgggcc
    15301 ttatccgtga agaaaaaggc ctccaatctg tggaaactat aatcgatgat ctcgcatcct
    15361 cgccaattcg tctttcagac gattcacaaa tcatgaacat ggaattaatc gcagctctag
    15421 atgctagcct catgcttgac ctcgctcaag cgtcgatttc tgctgcaaag gcccgcaagg
    15481 agtcgtgtgg agcccactat ctcatctaga ttgatagcgc accggtgcga aggcctagac
    15541 atggaccgca agggacggga cccccgcctc aatgcgttgg aagaggattt ttttgcttcg
    15601 gcaaaccgtc aaccaccaaa ccattcacgt gcacgagacg atggaatgcg tagacagcaa
    15661 catgttcgcg tagtattcga aaagtccaac aattcatctt ctgccttttt gcgcggtttc
    15721 atgaatccga gttattacag cgcaccaccc ttgcatcacg aaggttcatt ttggcatttc
    15781 tcgcgaaaag aaatcaacga tcttacactt gcgacgttag cattcgctct tgctttagcg
    15841 ttgatgcgtg taggtgggat gtttggaata ttaaacagcg gagcttcgcc ttttgcgcta
    15901 attatagaga tggcaatttg gggcacactc tacattttct cactcggtcc agcctttttg
    15961 ttgcatgaga tggcccacaa gttccttgcc cgacattatg gttgctgggc agaattccgt
    16021 gcagatccat ctggattgag gatgggggtc ctaattgcag ctttacttgg atttgtcttt
    16081 atggcccctg gagcggtgat ggtggcaggt aatatcacca aagaacagaa tggaaagata
    16141 gctttagcag gaccaatttc gaatcttgtt ctatattcag ttggttttgt gataggcggt
    16201 ctattactcg gccttagtga tgctgcgata atcgcagcat tcgtacaggc atggctttgg
    16261 gggaattcaa tcctagccgc attcaatatg ataccacttg gaccacttga cggcctcaag
    16321 gtaaaacgct ggtctgaacc agtattctgg atatttttca tcggcacaat cggtcttgct
    16381 tttggtacac ttactgggca aataacccct tacctcgaac taatatcttc tctaatttga
    16441 gtgatattac gaattctgat cttacgttgg atggaacact ttcgttgatt caaatagagt
    16501 cacagcgctg tcgtcttccg gtggccgaat caatttgtcc accaatgagg tgatgcaatg
    16561 actgtggaaa gagacgacgt agatgatgaa gacgattgta atgaagaggc ccccgaaatc
    16621 tcaaattggg caccttcaga tgaacagagt gagtatcaga aagaggcgat gtcagcagta
    16681 gatgatgcga tgaagcaact atcgcgcctt cgacgggttg cgaacaaaca ctacacagaa
    16741 gatcatggtg tagtccgcct caagggaatg gtcttcgaag tagaggggtc cagccgtagg
    16801 actgacaccg tgattcgact gactcatcat cgaaacatca tagctattgt cacagatatc
    16861 gatggagaaa tatcttcgtt atcgtttgaa gtggttggtt ctgcaatcat gattcgactt
    16921 ccacctcctc gtgtagttga aatccacgag gtgaagccca agggtggttg ttgttgattg
    16981 aaatccattc aatcgagaag tcaacaaacc accaaaatcc ctctattgat tatgtgtcat
    17041 aatgcgatga aaatgatgga cacctcgttc catttccggg gaatatcgcc ccctatcata
    17101 cgattttgag gaaactccac gctgtgtcgc ctccacgatt tcttggtcct ccatctcgac
    17161 tttgtctaga tctccacctg cccctttgcc gagcagttct gggtttccga catagccgtg
    17221 gtaaacgata cgagttttat ctacagaaag cgggattact tggttgacag ataatcccca
    17281 ggggtagaag ttgagcatta gtccagggta gaaccagtag tagtaggctg ccacattctc
    17341 accatattcg gccgaattct caggtggctc aaagtgaggt tcaccatctc ttgcaattcc
    17401 aatttgtagc accccccctt cgaataattc ggttcgatac tcgttactat ccaatacacc
    17461 atgtagatca ccatgaacga atggtatgtg aaaaccctcg agataattgt ctacgtaaag
    17521 agcccaattc gcttcaattt catacgatcg aaatcgactt ttgtcatgat tgtaggagtc
    17581 gatatctagc caccccagtc gagattccaa ttctgctata gcttccttga gatatctgtc
    17641 tccaccaacc aattgcaacc ccttccattc agcaactgga aatcttggta aatcatcgga
    17701 agcagaggga aatccttcga catcctggaa ctctggcatg ttcttcatac aaccatccat
    17761 accgaatgtt cggccatgat atttgcattg cagagtattg ctattgcttg gctcagtggc
    17821 cactaacatc cctctgtgtg tgcagacatt ggagagacat ctgattttat ctgaattagt
    17881 tagtatcagg gcttcaccaa gcattccttc aatgtcaatt agtggaatca cgttatgctc
    17941 ggtgaattga ctggaatgag ctgcaaagta ccaacaatct cgcatgtcat ccagtagatt
    18001 gtgaaatgat tccttttcag tatagaatct agatggtagg gtgtgagcct tagtgatgtc
    18061 aggatgaatc aatggcccag acataccagc gcgtgcactt cgtgcgtcaa agaattgtcg
    18121 ccacatattc ccctttgaca acgcttcagc atcaatcaac taagcgtatt caaaactggt
    18181 ttctcatcca tgtggaagaa ggagtatagg gcccaccaag tgatcatatc aaggctattg
    18241 acgacgttcg cagtgccagt attttcctca ccgtagtcct taccggtggt atccatccaa
    18301 tcttccattt cttcgagcgt atcacaagtc tggtggtaac accagtaccc atcaacaagc
    18361 cctccaaatc cgattgtcgt agtcccaatc gcttggaagc tagcatggtc agatcttgca
    18421 gtagtgtctt catagacgat aatttccggc ctatccattt cttgccatgc atcaactttc
    18481 catgtgtctt cggaatggcc agttccaaca agaataccca tttgttcttc cacgccaagc
    18541 gcatcggacc caatccagtt tgctaggccc accatacccg gctggtcgac actgtcgtga
    18601 ttttcagaag gcccaatgta tacgcgcatt ggccatacct cctcgtcttt cggatagcca
    18661 tcgggatcaa cttctggttg agggtcgcat ccagcatcac ctcctccgtg ctcgtcaccg
    18721 catggcgcgc cacctccgcc aggccaattg accccagcca tatcgagatt gatgtaatca
    18781 acaatagtca catcgggatt gtcttcggtc acgtagtagt ctgtccagta agacgatcca
    18841 cgcttaccgc cttcttcacc agaccaaagg cagaaaacca ttgtcctgcg ggtagaaaat
    18901 tctgcaagag ccgctgcagt gtctaatacc attgaggtgc ccgcaccgtt atcataagca
    18961 ccaacacgtg taccataact tcgctctcca gttatgtgag ggtcgtgaag tgctggaatg
    19021 aggcctacac cattaacggg tggcgcaaca tcgaaatgag caccgaaaac catccattca
    19081 tccgggtaca cactgcccca tgaatagccg cagacattgt atgactctgg attttgattt
    19141 ccaaaaatat cggtgaattc gaagcgatga tccattactt cgaggccata agattcgagt
    19201 tcgagatgga gccattgggc ggcttcctcg taagctggat tgccttggcc agcccaacgg
    19261 tcccaatatc cagcacgtcc atcccaactt actgggtcag gagtatcgtc tgtgagaaga
    19321 accagagtgt tgtacacatc tcgaccagat actagcccag ttgaatgcga ggccccttgc
    19381 cccttgtcat agacggccat ttcttgacga acgatatcaa gcgtctttat ggcgacgcta
    19441 ccaccgtctt cagcacttga attcacagta tcaaacgttg agtttccttc tgcagcaact
    19501 cgaattattg cagcacctcc tccagcgttg ccgttacgtt gaagccatgt agtccaagac
    19561 tcattcattt cacggattgg ccagttttca cggccgaaat caccaatcat catgagagcg
    19621 aaatcgatac gtggtggagc aaggatacga atttcgatgg attccccact cgcaagatca
    19681 atcacggttg agttttggac taggccagtt acagagtcct gaatcagata tggaataaag
    19741 actgaaatat cgtcactaga agtgaataga acgttctgaa aaacaccacc ttggaaggtt
    19801 gcgactccca ccatgagatc atccgcatcg gccccgtcat cgatttctcc gaagcagcct
    19861 gcgagaggag atgcaagcat caacagacat agcgctatgg cggaacccct tgctcccatc
    19921 aggccctacg ggtcatcggt gagcattcaa tccagcggta aagtgctatc gtcaatttgt
    19981 cgagttgtga gatttacgag aagatcaccc aggccgtaga atgctccaca gaggaggggt
    20041 ggattccaag ccgtaagaga ggtccatgga acctcagtat cccaagtcca cgtaccaagt
    20101 ccagtgcccc ataactccat tgcgagtgca agccaagcca tcacagcgta gagcattgga
    20161 gcaggaccga aacgaacgaa tccaaacatt agagctagta gaaaaagacc tgaagtatcg
    20221 attccatcaa acgccatcca aattgttagt gggatgaaag gaaccaacgc tcctgcagcc
    20281 acttttttgc catccggtag atgatttgca atacgtcgac caaggtcgaa taagaaccag
    20341 tgccctacag ggacatacaa tggcattagg tttcgttgat attcatagat taaccatatt
    20401 tcactgaaga ataattccat aggggtcgcg aaagcaagga cggccatcat ctcaatccgt
    20461 tctttccgtt ctcctcgaat gaagagaacc acgaataggc caatacacca gaggttgaca
    20521 ggccattcag aaaaatatct cgagatcggg agaccaattg caattgtagc ggcgtagaga
    20581 atttcccgtc gcacgtattc accacgctca gccgatgaag agagatagac aagtaaggct
    20641 cccatctgct tgcataatct cactcatagc gatgagaatg ggttcaaaac cggcctttcg
    20701 aatcctttcg attgttattg ggaacccatc tgagatgata attcgaccat cttcaaaggc
    20761 aatggtattc gcagcatacg cttcttcaac ggggacccaa ataacctcat caaaactctc
    20821 taactggtct ggacgaaggt gcccttcggc tgcgatgatt gtaccatccc gtggtactga
    20881 gcacaccgta gttagatgca acgtcgtctt tgggacctct atgatttgtg tagaaatatt
    20941 acgttcagca gcaaatttgg agaggaattc agccccaatt gcgttggttc tagtggataa
    21001 tccaatcagg attttactgc ccgtgtagat tacatctcca ccatccatca tcgcatctgg
    21061 cggcattcgt tgaattttga aatcgttaga gaggcgttca gcaatcgaat ccacttcacc
    21121 tgctctagaa gcgtgaccag gattacagat gacaacagca tcttcgaaga cgatggcagt
    21181 atcttcaacg aagcaacaat ctggatggcc ctcgagagcg tctagaattt cgacttcaac
    21241 gccacaggat ctcaaagcac cgacatatcc cctgtgttga tccttggcag caatactatc
    21301 cggtgatttc gttccaaaat atgtcgacaa ggcatctccg tagtcctctg atattttgcg
    21361 cacaatagcg cgccgcctct ttcgatcaaa gacgcccggc atgtgattta cctaattcac
    21421 atcctttgtc ggagcctctt catgcttgcc cgtcaatagc gaaccgagtg gcgagcatga
    21481 taccggcgcc atacagtgct aatgtggcca taatcccaag ccctagtgaa ggccagaaat
    21541 cccaacccct tctgagaagt atgggcatta tagcgaatag tgcaagtgcg ggaagcacaa
    21601 gatacagaat actctctgca taagcagcaa tatcttctga attgacacca tcacggtgga
    21661 gcatgatcat tgagaagata ctcgataatg gaagtgaaat tatcaccgca ccaaaaacaa
    21721 tcgatcgctt tgctacctca cttgcaccaa caataatccc accactgaac aggcccttca
    21781 ccaacaattc aacccaagtc atacacccag atgacacgtt gcagcctgaa aatcatctcg
    21841 tctctgattg ggtgaattat ctattcttaa gataatccgc accatacann nnnnnnnnnn
    21901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    21961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22201 nnnnnnnnnn nnnccatgcc cactgttcca ttgtccagcc agcgggtaga ccgtcaggag
    22261 gtagtggggg cccagtttgg accgatgctg acatagaaga atcgacctct tcactcctct
    22321 ttcctctaag aagaagaatt gctgctaaan nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
    22681 nnnnnnnnnn nnnnnnttcc gattaaaaga acaaaacccc ctcctccaat aagggctaca
    22741 tagcctagat ttgcagctgg taggtgccta tcagaatcca ttggaaaagc atcatcttcg
    22801 tccgcccaac catcaccatc tgaatcta
//
LOCUS       DUKB01000109            2543 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_140523, whole genome shotgun sequence.
ACCESSION   DUKB01000109 DUKB01000000
VERSION     DUKB01000109.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_140523"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..288
                     /locus_tag="HA345_03830"
     CDS             <1..288
                     /locus_tag="HA345_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018965282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84520.1"
                     /translation="RKSEFESTLIRQGATIGANATILCGIEIGAFAMVGAGSVVTRTV
                     HPHALMAGNPARQIGWVGQSGETLDSDLVCPRTGEKYIIENGILCREEVDE"
     gene            285..872
                     /locus_tag="HA345_03835"
     CDS             285..872
                     /locus_tag="HA345_03835"
                     /inference="COORDINATES: protein motif:HMM:NF012787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HIH84521.1"
                     /translation="MKWLSLLLVFMFVGCIGTSPEPENPYHGFEWTGTNPAPLFMLES
                     SDGDLWSLEEQRNKTVVLAFTYTRCYATCPVTSATLAAINDALSDEEKERITFVSVTI
                     DPWHDSPSVLTNWTEERGYEWPHLTGSPEAVVPVLNEYGVDPVNFEDDSDEGYGFSHT
                     QPTYIIDETGNALVLWTEPDLPLDLFLEDLRLIAE"
     gene            880..1803
                     /locus_tag="HA345_03840"
     CDS             880..1803
                     /locus_tag="HA345_03840"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HIH84522.1"
                     /translation="MNDRRRATWALLLVTLLWGGTFIWMKQALDASVVLTPTLAKNDA
                     AIFFVLMRFLIASALLPLVLSEARKGLMSIPNWKAGSLLGVLIWGGFLLQMIGLTDVT
                     PAVSAFLTSLYVVFTSLIAMAITRRFLSLPAIVGVFLATVGAGWISGPPQINFGLGEW
                     LTIACAFLFAAHIIATDRLTQGQDAVGMTATMLLTVTILSGITQLVFGSSDYGTLIDL
                     TLSPSFLFPLLYCAILGSIVALLILMMHQRNLDPVHAAVLYAAEPVWAMLGSLAFDLE
                     GGLTGWLIFGASAILVGNLIVQFGENSDEEE"
     gene            1863..2204
                     /locus_tag="HA345_03845"
     CDS             1863..2204
                     /locus_tag="HA345_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84523.1"
                     /translation="MATFDPATMVFGSFADQLDAAFGSSIGWIVGNLLLLVVVFGLIQ
                     ALRNASDLIRYFEITNASFTSWIGYTIATIIQHLVFLSFGFPFIGAFLTAVSSTLLWK
                     WTFDTLTPTNA"
     gene            2256..>2543
                     /locus_tag="HA345_03850"
     CDS             2256..>2543
                     /locus_tag="HA345_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84524.1"
                     /translation="MATFGDRPPLPEDLSELLSDETASTVFLKADCPPRVKSGHISEI
                     RLVELEEEPWSRGRVESLAEAIQQVVEENQDRSDCFVEIERLGCTIFQVGDL"
BASE COUNT          587 a          560 c          622 g          774 t
ORIGIN      
        1 cgcaagtcgg aatttgaatc tacattaatc cgccaaggcg ccactatagg cgctaatgcc
       61 acaatccttt gtggaattga aattggagcg tttgcaatgg ttggtgcggg tagcgttgtc
      121 acgcgtacag tgcaccctca tgctctcatg gctggaaatc cagcgagaca gattggctgg
      181 gtggggcaat ctggtgaaac cttggattct gatttggtct gtccgagaac aggagagaag
      241 tacatcatcg agaatggaat cctttgtcga gaggaggtgg atgaatgaag tggcttagcc
      301 tattgttggt gttcatgttt gtcggttgta ttggcacatc tcctgagcct gagaatccat
      361 atcatggatt cgaatggact ggaacgaatc ccgccccctt gttcatgttg gagtcctcag
      421 atggtgatct ttggtcgctt gaggaacagc ggaataagac agttgttctt gcttttactt
      481 acactcgttg ttatgctact tgtccagtaa cttcagctac cttagcagcc attaatgatg
      541 ctctttcgga cgaagaaaag gaaaggatca catttgtatc ggttactatc gatccttggc
      601 atgattcacc ttctgtcttg accaattgga ccgaggaacg aggatatgaa tggcctcatc
      661 ttactggttc tccagaggct gttgttccag tgttaaacga atatggggtt gatccagtaa
      721 atttcgagga tgattctgac gaaggatatg gattcagtca tacacaaccc acttacatta
      781 tcgatgaaac cggcaatgct ctcgtacttt ggacagaacc agatttacca ctagatctct
      841 tccttgaaga tcttcgactc attgcggagt gattctcaga tgaatgaccg ccgtcgagcg
      901 acttgggccc ttctattggt tactcttctc tggggtggaa cattcatctg gatgaaacag
      961 gcattagatg caagcgtagt gttgacaccc actttagcaa aaaatgacgc tgctattttc
     1021 tttgtcctca tgaggtttct aatcgcttct gccctccttc ctctagtcct tagtgaagca
     1081 agaaaaggcc tcatgagcat acctaattgg aaggctgggt cgttgctggg ggtactgatt
     1141 tggggagggt ttctgttaca gatgatcggt cttaccgatg ttacgccagc agtctcagct
     1201 tttctgacaa gcctctacgt tgtattcaca tctttgattg ccatggcaat tacccgccgc
     1261 tttctttcac ttccagcaat agttggtgtc tttcttgcaa ccgttggagc aggttggatt
     1321 tctggaccac ctcaaatcaa tttcgggctt ggtgagtggc tgactattgc atgcgcgttt
     1381 ctttttgcag cgcatattat tgcaacagat cgtttgacac aaggtcaaga tgcagtgggc
     1441 atgactgcaa cgatgctgct tactgtgacc attctttctg gtattacgca actagtattc
     1501 gggtcaagtg attatggcac tctaatcgat cttacactct ccccatcgtt tctctttcca
     1561 ctactatatt gtgcgattct tggaagcata gttgcgttgc tgatattgat gatgcatcag
     1621 aggaaccttg acccagttca tgcggcagta ctctatgctg ctgaaccggt ctgggcaatg
     1681 ctcggctccc tggccttcga ccttgaagga ggccttacag gctggctcat tttcggtgct
     1741 tccgccatcc ttgttggcaa tctaattgtc cagttcggtg agaattccga tgaagaagaa
     1801 tgacttggct tgagtcataa gtatggagga gtgttcaaga atcggtgaat agtcggcaat
     1861 tcatggcgac cttcgatccc gctacaatgg tctttgggag ctttgctgac caactcgatg
     1921 cagcatttgg gtcatctata ggttggattg tgggcaatct gcttttactc gtagttgttt
     1981 ttggtttgat tcaggcgctt aggaatgctt ctgacctcat cagatatttc gagataacaa
     2041 atgcaagttt cacatcttgg attggataca ccattgcaac catcattcaa cacttggttt
     2101 tcctttcctt tggtttccct ttcatcggcg catttctaac tgcagtatct tccacacttc
     2161 tttggaagtg gacatttgat acattgacac cgacgaatgc ttgagcgtct atatggacgg
     2221 cgggttgaag caccttcggg attcaattca ctaacatggc gacgttcgga gaccgccctc
     2281 ctctccctga ggacttgtct gaattactct ctgatgagac ggcaagtaca gtatttctca
     2341 aggccgactg tccaccacga gtaaaatcgg gacacatttc tgagatacga ttggttgaat
     2401 tggaggagga accctggtct cgtggtcgag ttgaatctct tgctgaagca attcaacaag
     2461 ttgtcgagga gaatcaggat cgatcagatt gttttgttga gattgaacgc cttggttgca
     2521 cgattttcca ggtaggagat ctt
//
LOCUS       DUKB01000110            3772 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_270859, whole genome shotgun sequence.
ACCESSION   DUKB01000110 DUKB01000000
VERSION     DUKB01000110.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3772)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3772)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3772
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_270859"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1885
                     /locus_tag="HA345_03855"
     CDS             <1..1885
                     /locus_tag="HA345_03855"
                     /inference="COORDINATES: protein motif:HMM:NF014466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84525.1"
                     /translation="SQWEDSDGDGYGDNGDFMPNDPSQWLDSDGDSYGDNPTGSNGDA
                     FPQDPTQWSDQDGDGYGDNQTGNSPDAFPTDPNEWIDTDEDGYGDNGDFMPNDPTQWS
                     DQDGDDYGDNPAGTNPDAFPNDGTQWVDADGDGYGDNSNGNDADAFPSDSSQWSDIDG
                     DGYGDNPAGTTPDDCPNTPSNARPVDSNGCHISELDTDDDGVTDDIDICPQTPSAEVA
                     DGTGCSPSQRDTDGDGIKDNLDQCPGTPSNDLADQDGCGQSQIDDDGDGVMNDADNCP
                     STDAGLVVDSFGCASNQLDSDNDGVTDDIDQCVATSSSAVVDEDGCADSQKDTDDEGL
                     TDDKDQCPDSDSSETVDINGCADSQKDSDMDSVNDADDNCPGTPGIEVADVLGCSPSQ
                     KDTDDDGVNNALDDCPQTIDGAPVNSAGCANYERDTDGDGVKDDTDICPSTLISESAD
                     LLGCGPSQKDTDGDGVKDSMDDCNGTLSTVEVDDVGCSITQRDTDGDGVNDSDDAFPN
                     DPDESSDRDGDGVGDAMDAYPDNPEASIEGELDSPMGLIIILLVVTILVLGGGGVLLV
                     RFGGNNPAVTSGLVMDGTETDTSNVQGNEPEQFVDENGNHWTRNPDGSMLWWNGTEWQ
                     QVE"
     gene            complement(1892..2995)
                     /locus_tag="HA345_03860"
     CDS             complement(1892..2995)
                     /locus_tag="HA345_03860"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HIH84526.1"
                     /translation="MSTRLIHVDAMRGLAILCMVQVHTAALMPAPVSIDHPIALISAS
                     IGGMAAPMFVLISGWAFQRGLDRRRARGESILRWSLVRGGVLIGLQFLLGLLLPQRFN
                     VASPGILTLLGICTLLFPLYYLRDDMSIRIGINPRKARILRAIFTTFFAWFIFTTWSN
                     LRPGPTWNDMIQVESILDWFTKAVISGTYPLLPWVAYFIIGSILDERPLEGDAKKIRL
                     QTTGSIAFGSLILTGIICYQTGISWAVTMGEGVLTFFPANPWFVLVSCSFSVFIWDLF
                     RTTTSQNWMSRILAPSGRLSLTIYMLHFALLGIIEPYIPNHGLEIAFMMTIAHMAIWS
                     ILAHIQQNHTPYLSIEQLLHKFSNSNPRQSESE"
     gene            complement(3000..>3772)
                     /locus_tag="HA345_03865"
     CDS             complement(3000..>3772)
                     /locus_tag="HA345_03865"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012800.1,HMM:NF019448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84527.1"
                     /translation="IVSKKAAESLSALVLDVKHGQAAFMTEREDAMRLAEAMVSAATH
                     CGIHTRAILTTMDCPLGSAIGNAIEIVESIETLRGNGPSDLEELVCAQGGALLEMVGI
                     VEDFESGSIAILDALHDGSALERFIEMAVTQGVDPSVFESEHMLYRSLGLLDPELNET
                     ELKCDSEGQVVHIDALALALVALDLGAGRKKVTDTIDHAVGILVEVDIGESMTEGQTW
                     VTIHHRGKLSGTLISRVQNALKIGEETEQESRIDTWIR"
BASE COUNT          977 a          827 c          981 g          987 t
ORIGIN      
        1 aagtcagtgg gaagattctg atggagacgg atatggtgac aatggagatt tcatgccgaa
       61 tgatccatcc caatggttag attctgatgg agatagctat ggagataatc ccactgggtc
      121 caatggagat gcattccctc aagatccaac tcaatggtca gatcaagacg gtgatggata
      181 cggtgataat cagacaggga actcacctga tgcattccca accgatccta atgaatggat
      241 agacacggat gaagatggat atggtgataa tggcgatttc atgcctaatg atccaactca
      301 gtggtcagat caagacggag atgattacgg cgataatccg gctgggacga accccgatgc
      361 tttccctaac gatggtactc agtgggtgga tgcagacggt gacggctatg gggacaactc
      421 taacggcaac gatgctgatg cgttcccctc ggattcgtca cagtggtctg atatcgatgg
      481 tgacggttat ggtgataacc cggccggtac tacccctgac gattgcccca atactccctc
      541 aaatgcccgt ccagtggatt ccaatggatg tcacatatct gaacttgaca ccgatgatga
      601 cggtgtgacg gacgacatcg atatttgccc acagacgcct tctgcagagg ttgcggatgg
      661 tacaggttgt tcaccatctc aacgagacac cgatggtgac ggtatcaagg ataatcttga
      721 tcaatgtcct ggtacgcctt caaacgatct tgctgatcag gatggttgcg ggcagagtca
      781 gattgatgat gatggtgacg gcgtcatgaa tgacgccgat aattgccctt cgactgacgc
      841 tggccttgtt gtggattctt tcggttgcgc ttcaaaccag cttgattcag acaatgatgg
      901 tgtcacagat gacatcgatc agtgcgtcgc cacaagttca tcggcagttg tagatgaaga
      961 cggttgcgcc gactctcaaa aggataccga tgatgaagga ttgactgatg acaaggatca
     1021 atgtccagat agtgattcgt cagaaactgt tgacattaac ggatgtgctg attctcagaa
     1081 ggattccgac atggattcgg tgaatgatgc agatgacaat tgtcctggaa cgccagggat
     1141 tgaggtggct gatgtcttag gttgttcacc ttctcagaaa gatacagatg atgatggtgt
     1201 aaacaatgct ctcgatgact gtcctcagac aatcgatggc gctcctgtga attctgcagg
     1261 ttgtgcgaat tatgagcgcg atacggatgg tgatggagtc aaagatgaca cggatatatg
     1321 tccatcaact ctaatctcag aatcagcgga cttgcttggt tgtggtccct ctcaaaagga
     1381 tacagatgga gatggagtca aagattccat ggatgattgt aatggcactt tatcaacagt
     1441 tgaggtggat gatgttggat gttccattac acaacgtgat actgatggtg atggcgtaaa
     1501 cgacagtgac gatgctttcc ctaatgaccc ggatgaatcc tctgatcgtg atggtgatgg
     1561 tgtcggcgat gcaatggatg cttatccaga taatcctgaa gccagtattg aaggcgaact
     1621 tgattcacca atgggtctca tcataattct cctcgtggta accatactag tccttggcgg
     1681 tggaggcgtt cttctcgtcc gcttcggtgg aaataatcct gcagttactt ctggtttggt
     1741 aatggatgga acggaaactg atacttccaa tgttcaaggg aatgagcccg agcaatttgt
     1801 agatgagaac ggaaatcatt ggacgaggaa tcctgatgga tccatgctat ggtggaatgg
     1861 aacagaatgg cagcaggtcg agtgattgat ttcattcact ctcgctttgt ctgggattcg
     1921 aattactgaa tttatggagc agttgttcaa tactcaagta aggagtatgg ttttgttgta
     1981 tgtgggctaa gatgctccag attgccatgt gtgcgattgt catcatgaat gcaatttcaa
     2041 ggccatgatt agggatgtat ggttcgatga ttcccaacag ggcgaaatga agcatgtaga
     2101 ttgtcaggga gaggcgtcca gagggagcta ggatgcgact catccaattt tgtgatgtag
     2161 tggtgcggaa aagatcccaa atgaaaacgc tgaaagagca agatacgagc acgaaccatg
     2221 gattcgcagg aaagaaggtt aggaccccct ctcccatcgt cacggcccaa gaaattcctg
     2281 tctgatagca tatgatgccg gtaagaataa gcgaaccaaa ggctatcgaa cctgtggttt
     2341 ggagtcgtat tttcttagca tctccttcta atggtctttc atcaaggata cttcctatta
     2401 tgaagtaggc cacccaagga agtaatggat atgttccact tattacagcc ttagtgaacc
     2461 aatctaggat tgattccacc tggatcatgt cattccatgt cggtccaggt cgtagattgg
     2521 accatgtggt gaaaatgaac cacgcgaaaa atgtggtgaa gattgctcgt aatatccgtg
     2581 ccttccgtgg atttatgcct atgcgaattg acatatcatc tcgaagatag tatagaggaa
     2641 ataatagggt acagattcct agaagtgtca ggattcccgg cgatgcaaca ttgaatcgtt
     2701 gtggaagtaa gagcccaagt aggaattgta gtccaatcag gaccccccct cggaccaagg
     2761 accaacgtag gatggattct cctctggctc tacgccgatc taatccgcgt tgaaacgccc
     2821 atcctgagat taggacgaac attggtgcag ccatgccgcc gatagacgct gaaatcagtg
     2881 caatggggtg gtctatgctt accggtgctg gcatgagggc ggcggtatgg acttggacca
     2941 tgcagaggat tgcaagtcct cgcatagcat cgacatggat aaggcgtgtt gacactccct
     3001 caccttatcc acgtatcaat tcgagattct tgttccgttt cttctccaat tttcagtgca
     3061 ttttgaactc tggatatgag ggtccctgag agtttaccac ggtgatgaat tgtaacccat
     3121 gtctgtcctt cagtcataga ttcgccaata tctacctcga caaggatacc gaccgcatgg
     3181 tcgatagtat cggtcacctt ctttcgcccg gctccaagat ctagggccac taatgcaagt
     3241 gcaagagcat cgatgtgtac gacctgcccc tctgaatcac atttgagttc ggtctcattt
     3301 agttcgggat cgagaagacc aagagacctg tatagcatat gttcggactc aaacaccgag
     3361 ggatctaccc cctgtgtgac tgccatttct atgaatcgct ctagggcgct tccatcatgg
     3421 agtgcatcta ggattgcgat gcttccggat tcgaagtcct ctacgattcc taccatctcg
     3481 agtaatgctc ctccctgagc acacacaagt tcttcgagat cggaagggcc gttacctcgt
     3541 agggtttcta tggactctac aatctcgatt gcgtttccga ttgctgagcc aagagggcag
     3601 tccatcgtcg ttaggattgc ccgtgtatga atcccacagt gagttgctgc ggagaccatc
     3661 gcctctgcga gtcgcatagc atcttctcgc tccgtcatga atgccgcctg tccatgcttg
     3721 acatctaaga caagtgcaga gagagattca gcagctttct tcgacacgat gc
//
LOCUS       DUKB01000111            8618 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_126440, whole genome shotgun sequence.
ACCESSION   DUKB01000111 DUKB01000000
VERSION     DUKB01000111.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8618)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8618)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8618
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_126440"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /locus_tag="HA345_03870"
     CDS             complement(<1..917)
                     /locus_tag="HA345_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84528.1"
                     /translation="MERTSPRIGFIAAAICIFLLASLLFNSYLGIFPAIISDVIPSKF
                     HPHYYIANLLGLEGSASAYSEAGALSLQEHLQLILLPITIVVARRGLKPRETFEMPRV
                     ASLAEQAEAMEAGGVATVSREAGGNRMTVAVSRIMVLGMGLFLILNSVIGAFPGVIFG
                     EFGSRLHVAYAVMSKLGMDPSGPIWSDAGFTISTQDIGVIWLLVFLIPMAFRSRGQPE
                     GRPSVPSSNLPGVGRSQNRVVNPLAQEVISSVLGTKDVPINGNKTFSMHIPATGVMAS
                     GIEEPTFGAIESTEGVVIDMPSLEEEEEE"
     gene            complement(992..2107)
                     /locus_tag="HA345_03875"
                     /pseudo
     CDS             complement(992..2107)
                     /locus_tag="HA345_03875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011024231.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
     gene            2217..2936
                     /locus_tag="HA345_03880"
     CDS             2217..2936
                     /locus_tag="HA345_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84529.1"
                     /translation="MPDLQIRLIDVPTLISLTEMQVDDLVQGMETQLLRNSRPQIHGG
                     MERRFAVDLEGDFLEWMDEWRRELGEGTLMGEIREAHNRKMIGAEEACRVISTLTEWA
                     SIGDWAAWEGRVLLYIEPHLDDPLEDAEDLYRSQVWNTALERIGQMNQESYLESVSLD
                     WMQRREALGETMDPAKDPLILPTMQAHQRAADGLSKIAHVVKRRMDTHALIGREWLEA
                     NRWGQGEWNLQRILINGWPED"
     gene            2939..3520
                     /locus_tag="HA345_03885"
     CDS             2939..3520
                     /locus_tag="HA345_03885"
                     /inference="COORDINATES: protein motif:HMM:NF013621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HIH84530.1"
                     /translation="MDSTMIVLGRFQPFHRGHAAMISAALKHLKANGSKNPLRICIGS
                     SEAELSLENPWNAEEREQMIQTWLDSNHATEIGKTQIVQVPDLNDPPNYVRHAEQFHG
                     EAGSIFTSDRGTADLYEDAGWEAIIMQHENRSNWQGWRVRATMQMMSTITDYEAVRAV
                     LMESIPEEVVDFLIENDGLRRLAFMGHGGEPVG"
     gene            complement(3521..4033)
                     /locus_tag="HA345_03890"
     CDS             complement(3521..4033)
                     /locus_tag="HA345_03890"
                     /inference="COORDINATES: protein motif:HMM:NF019032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1499 domain-containing protein"
                     /protein_id="HIH84531.1"
                     /translation="MSASSFITGLLALLLLYPATVGLVQISNGLSGPESGQGFPDNCE
                     GKEYKCARIAPDSHRSNGEMELRFNNTSVDQVLATFDLWVDEQPRTIEETRLIDESSV
                     DIHVVIHTQFLSYADDLYVHIECNGDDAVVWLHSSSRFGVSDLGVNPNRILDIHSSLI
                     SVQHAGTPCS"
     gene            complement(4030..4554)
                     /locus_tag="HA345_03895"
     CDS             complement(4030..4554)
                     /locus_tag="HA345_03895"
                     /inference="COORDINATES: protein motif:HMM:NF013212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HIH84532.1"
                     /translation="MAEDEPSDLDEVQPAEEIEVPLSPEERIKELEAGLHEIEKEMLY
                     KQAEVQNALAQVAKVRSEGTRYGGMGLARRIVGSVENLERAIDHIEEDDEGPISSALR
                     MVHKDILASLKTEGVEPIEALGLPFDPAKMEAITTVPSSEEYGQGMVVSVLEPGWVLR
                     DRVLKVARVVVASE"
     gene            complement(4603..5751)
                     /locus_tag="HA345_03900"
     CDS             complement(4603..5751)
                     /locus_tag="HA345_03900"
                     /inference="COORDINATES: protein motif:HMM:NF015983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HIH84533.1"
                     /translation="MVMGIRLPNVPELHEAPEAGEAEGCIQCMQGSKLVLFITGKCHW
                     ACDYCPLSENRKESDFMFANERRCTDYDEVIEEARAMRATGAGITGGDPMMDFNHTLE
                     GIRRLRSEFGPTFHMHLYTSIAFRLDWAPLLAEAGLDEIRFHLLDFKLDPYRKIIRAC
                     ADAGIHTGVEVPCPPDMESEMFALLENLRDTGISFLNLNELEITVGNHDQMDVRGFNL
                     SDGITAGAAGSSELAERLRDRVRAADVSAPDPDDGGIRAAYGYHLKFCTAVYKDAGQL
                     RRRFLRRGEATIAPHETLTDDGTLLFGAIYSSSEDAQGDIEEIRDVCDLPATFLHYDE
                     AESRIEIPLVIAEEFAEEIDAPVALVEVHPTHERLEMTLIWLNEHRPE"
     gene            complement(5754..6389)
                     /gene="pdxT"
                     /locus_tag="HA345_03905"
     CDS             complement(5754..6389)
                     /gene="pdxT"
                     /locus_tag="HA345_03905"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: protein motif:HMM:TIGR03800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HIH84534.1"
                     /translation="MVEVGLCMIQGARHAHIRALDNAAKHLNSPLVIHELRTREDVVK
                     TPCDAYVLPGGESTVMRLTGGSEDKGGSGLLPALFEQLRLIGAAVLGTCAGAILLCDP
                     QDGGEPLIPARIGRNAYGRQVDSFQSPIESPLLSRSFPGVFIRAPRFESISTGVEVAA
                     SNGGEPVGVISGRRLALTFHPELTEDFGFHAWLLSIAMGSPPGPSPVKSEA"
     gene            6493..7686
                     /locus_tag="HA345_03910"
     CDS             6493..7686
                     /locus_tag="HA345_03910"
                     /inference="COORDINATES: protein motif:HMM:NF012488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HIH84535.1"
                     /translation="MDSKWEGRCWFIPGPTRLTDAVLAGLSHPTMTHRSPEFKSVMAE
                     LHGRLRHSFALTPTTIEVGQQAQEGEDGYSVVVVSGSGTAAMEMVIANRFGSNDNVLV
                     PTNGKFGERVAQLCQHFANLTHLKYAWGQPFDLGEIDTMLSTGKHDALAICHNETSSG
                     ITQNAPEIAKIAEKHGIPFILDGITSVGGLPVHPAEWNAEAVVVGGQKCTAGPSGIAA
                     VAVSEHFVEAMMENRKTNPEQAIYYLDLIQALKKAADDQTPWTPSINLCTGWVASLRE
                     QDEEGMEERWTRCARLAKGVRNLFSDLGFELFAHENQRSDTVTAILYPDPSWGEEWRR
                     WMTMEQDTHVIGGQDHVKGRIFRVGSMGVTPIEEMVEGCRRMIEGFRHFGMELPDLDV
                     ESYFR"
     gene            7691..8395
                     /gene="deoC"
                     /locus_tag="HA345_03915"
     CDS             7691..8395
                     /gene="deoC"
                     /locus_tag="HA345_03915"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR00126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HIH84536.1"
                     /translation="MTSDSEIAKIALECLDYTLLDEEATDEDVKAFIHRANTYPPAAV
                     CVLPIHVRLVRSLLDEGILLASAAGLFPDPDGDINLRTEDVKFALSEGADEIDVVLDF
                     NAMMEGREGDVRASLNALIEAAGDAPVKVILETSCLDYTEMVDACKIALDSGASFLKS
                     STGRRGGCTPLVAQVLAESAGEKIGIKLSGGIRTIEDVRIHIEAIEEDWPIGMCTPNR
                     FRIGASSLLDSIIEHL"
     gene            complement(8398..>8618)
                     /locus_tag="HA345_03920"
     CDS             complement(8398..>8618)
                     /locus_tag="HA345_03920"
                     /inference="COORDINATES: protein motif:HMM:NF014019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HIH84537.1"
                     /translation="VIRWGREEVIQRLREEAQKQGWDEVINVRLETAMIRKSSNASNR
                     KDKGAAMEYLIYGTGIRLSPINIQLSSA"
BASE COUNT         2324 a         2192 c         2119 g         1983 t
ORIGIN      
        1 tcctcctcct cctcctcctc caatgatggc atatcgataa ccacgccttc tgtggattcg
       61 atagcgccaa aagtaggctc ttcaattcca gatgccatca cacctgtagc cggaatatgc
      121 atagagaacg tcttattgcc attaataggg acatccttgg taccgagaac tgatgatatg
      181 acctcctgtg ccaacggatt cacaacacga ttctgactgc ggccaacacc aggtaagttc
      241 gatgaaggga ccgatggccg tccttccggc tgtccacgtg aacggaatgc cattggaatc
      301 aggaatacaa gaagccagat tactccaatg tcctgagttg agattgtgaa acctgcgtcc
      361 gaccaaatag gacctgaggg gtccatacca agtttgctca tcacggcata agcaacatga
      421 agacgagagc cgaattcacc gaaaatgacg ccgggaaagg ctccaatcac ggagttcaag
      481 ataagaaaaa gtcccatgcc taagaccatg attctcgata cagccaccgt catacgatta
      541 cccccagctt ctcgtgatac tgtggcgaca cctccggcct ccatcgcctc agcctgttct
      601 gcaagactgg cgactcgagg catctcaaag gtttctctcg gcttcagacc acgccgagcc
      661 actacaatcg taattggcaa caaaatgagc tggagatgct cctgtaagga cagtgctcca
      721 gcctcagagt acgctgatgc agaaccttcg agaccaagca gattggcgat gtagtagtga
      781 ggatggaact tgcttggaat cacatcggaa ataatcgcag gaaagatgcc aagataagag
      841 ttgaacagaa gggaggccag aaggaatatg caaattgcag ccgcaatgaa accgattcgc
      901 ggcgacgttc gctccatgct gattgacctc tacgttggct gttaggaagt aactcctgct
      961 ttaaccaatg cctcagtaaa aaaacaagat ttcagcgacg tacgatgatg gaaagtaaat
     1021 ctccatcctt caagagatga tccaaaccga cacgttgcca atcgaatttc gcactcggac
     1081 ccttaacacg agcatatctg aatttacgaa cgaaatctcg atgcagtttg acacaaacgt
     1141 cttgcactgt gctggtattc ttgatgatta gcggctccac gagatcggcc tccccaccct
     1201 ggggcttaag gaagacacgc atgaaacgta aattatcgaa gatgaagttc ttcatctcct
     1261 ctattccctg tcctgttttt gcagatacag ggagaatcgg ccacccatca gggatcatgg
     1321 cccgtgcacg agacatatcc tcttcagtcg caagatcgac cttgttaatc acgacaacgg
     1381 ccttagaata aatgcaatta cctgcaagcg tatccacaat gtgatcatga gacgtgcggg
     1441 atcgcatcgt cacctcagca gatactatgc cgaaagaacg gacaatttcc tggatatcaa
     1501 cgaaatccac atctggttga gcgcatgtgg atcgaacgat aattccacct cgtccagtct
     1561 tattgatgaa tacctgcggt tatgcttcat tgagtcgcat tcccgcttta tccaattccg
     1621 aatcaaggac attgaagtgg gaatcttgga acggatcgat gacatagaga accatatctg
     1681 atgctcgaat cacattcaga atctccttgc ctctaccctt accgtccgca gcccccttaa
     1741 tcaggcccgg taggtcgaga atctggatct tcgcaccatt gtgctcaagc acaccgggga
     1801 tgcaagtcag tgtagtgaag gcaaaggcac caatttcaga atctacacct gtcaagcgac
     1861 tgatcaggct cgatttacct actgaaggga aaccgacgag agcgacagat gcatcgccgg
     1921 acttcttgac ctcaaaaccg tcccctccgc cactagattt tgaatgagct gtggctttct
     1981 cttcctttac tttcaacgcc gcaattttag ccttgagttt cccgatatgg gcgttggttg
     2041 ccttattctt ctgagtcttg tggatctcct cttcaaggga tgcaatttgc tcacgaatgg
     2101 tcgccaactc ccctcacctc cacattctga tgtggtttcg tctacacgac gattcttcaa
     2161 acccccgtcc aagcgagggt tcatgcgtgg actgtgtgga ttgccgatag aggacgatgc
     2221 ctgaccttca gattcggctt attgatgtcc ccacactcat ctccctaacg gagatgcagg
     2281 tagacgattt agtgcaaggt atggaaactc aactgcttcg caattcacga ccccagatcc
     2341 atggaggaat ggaacgtaga ttcgctgtcg acctcgaggg cgatttcctt gaatggatgg
     2401 atgaatggag gagagaactt ggagagggga ctctgatggg cgagatccgt gaagcccaca
     2461 atcggaagat gattggcgct gaagaggcct gtcgggtcat ctctacgtta acggaatggg
     2521 ctagtattgg ggactgggct gcttgggaag gccgagttct tctctacatc gaacctcatc
     2581 tcgatgaccc cctagaggat gccgaagatc tctatcgaag ccaggtttgg aataccgcct
     2641 tagaacggat tggacaaatg aatcaagaga gttatttgga atccgtatct ctggattgga
     2701 tgcaacggag ggaagcacta ggagagacga tggatccagc caaagaccca ttgattctcc
     2761 ccaccatgca ggctcatcaa agagcagctg atggtttgtc gaaaatcgct cacgttgtga
     2821 agcgacggat ggacacacat gcgctgattg gtcgcgaatg gctggaagca aaccgctggg
     2881 ggcaaggaga atggaatctc caaagaatac tcatcaatgg gtggccggag gactgaacat
     2941 ggactcgaca atgattgtac taggtcgctt ccaaccgttc catagagggc acgcagcaat
     3001 gattagtgcc gcccttaaac atctgaaagc aaatgggagc aagaatcctc ttcgtatctg
     3061 catcggctcc tcagaggcag aattatcatt ggaaaaccca tggaatgctg aagagcgaga
     3121 gcaaatgatc caaacatggc tagacagtaa tcatgcaaca gagattggga aaactcagat
     3181 tgtacaagta cccgatctaa atgacccccc aaattatgtc agacatgccg agcaattcca
     3241 tggcgaagca ggatccatat ttacgtctga tcgagggact gctgacctct acgaggatgc
     3301 cggctgggag gccataataa tgcaacatga gaaccgcagc aactggcagg gttggcgagt
     3361 gagagccacg atgcaaatga tgtcgacaat caccgattat gaggcagtaa gagctgttct
     3421 aatggaaagt attcccgaag aagtggtgga ttttctaatc gaaaacgatg ggcttcgacg
     3481 tctcgccttc atgggtcacg gcggagaacc agtcggttga ttacgaacat ggcgtccctg
     3541 catgttgcac tgaaatcaag gatgaatgaa tatctaggat gcgattggga tttactccaa
     3601 gatcactgac tccaaatcga gatgatgaat gcagccatac cactgcatca tccccattac
     3661 attcgatatg gacatacaaa tcatcagcgt aagacagaaa ctgagtgtga atgacaacgt
     3721 gaatatctac gctggattca tcgattaaac gcgtttcctc aatagtccga ggctgttcgt
     3781 caacccaaag atcgaaggtg gcaagaacct gatcaacaga tgtattgttg aatcggagtt
     3841 ccatctcacc attggaccga tgtgaatctg gagcaatacg tgcacacttg tactccttac
     3901 cttcacaatt atcaggaaaa ccttgacccg attcaggccc tgaaaggcca ttgctaatct
     3961 gcactagacc aacggttgca gggtacaaaa ggaggagggc tagcagccca gtaatgaaag
     4021 atgatgcact cattctgaag cgaccacgac gcgtgccacc tttagcaccc tgtcacgaag
     4081 cacccatcca ggttcgagta cagagacaac catgccctgc ccatattctt ctgacgatgg
     4141 gacagtggtg atagcctcca tcttcgcagg atcaaatggg agacccagcg cttcgatagg
     4201 ttcgacacct tcggtcttga gggatgctag gatatccttg tgaaccatcc gaagtgctga
     4261 tgaaatcggg ccctcatcat cctcctcgat gtgatctatg gcgcgttcta ggttctcaac
     4321 cgaaccaacg attctgcgtg ctaggcccat gcctccgtag cgtgttcctt ccgaccggac
     4381 ctttgcaacc tgagcgagag cattctgaac ctcagcctgt ttgtagagca tctccttctc
     4441 aatctcatgg aggcccgcct caagttcctt gattcgctcc tcaggagaca aaggtacctc
     4501 gatttcctcg gcaggttgca cctcgtccag atcggagggt tcgtcctcgg ccatgggctc
     4561 ccgaaacaaa aggtattcat caagccgacg caggagaagt gctcattctg gtcgatgttc
     4621 attaagccag atgagagtca tctccaatcg ctcatgagta ggatgtacct caacgagtgc
     4681 tacaggtgca tctatttcct cagcaaactc ctcggcgatt acgagaggta tctcgattcg
     4741 agactccgcc tcatcataat gcaaaaaggt tgcaggcaaa tcacatacat cgcgaatttc
     4801 ttctatgtca ccttgcgcat cttcggatga actgtagatt gccccaaaca ggagagttcc
     4861 gtcatcagtg agagtctcat gaggagcaat tgtcgcctct ccacggcgga gaaaacggcg
     4921 tcgaagttgc ccggcatcct tgtacaccgc cgtacagaac ttcagatgat acccatatgc
     4981 tgcccttatc cctccgtcat ctggatcagg tgcagaaaca tctgcggcgc gaacacgatc
     5041 ccggaggcgt tcagccaatt cagatgaacc agctgccccc gccgtgatgc catcggagag
     5101 attgaacccc cgaacatcca tctgatcgtg attaccaact gtaatctcaa gttcgttgag
     5161 gttaaggaaa gagattcctg tgtcacgaag attctcaaga agtgcaaaca tctctgattc
     5221 catatctggc ggacatggaa cctcgacgcc agtgtgtatc cctgcatccg cgcaagcgcg
     5281 gataattttc cgatatggat ctagtttgaa atcgaggagg tggaagcgta tctcatcgag
     5341 tccagcctct gcgaggagag gagcccagtc gaggcgaaaa gcgatggacg tgtagaggtg
     5401 catgtggaaa gtgggaccaa attccgaccg aagtcggcga attccttcga gagtatggtt
     5461 gaagtccatc atcgggtcac cacccgtgat tcctgcacca gtggcccgca tcgcccgagc
     5521 ctcttcaatc acctcatcgt aatctgtgca acgtcgttca ttcgcaaaca tgaaatcgct
     5581 ttccttacga ttctccgata gtggacaata gtcgcaggcc caatggcact tacctgtgat
     5641 gaagaggacc aatttgctcc cttgcatgca ttggatacag ccctctgcct cgccagcttc
     5701 gggtgcttcg tgaagttcgg gaacattggg gagccggata cccattacca tactcatgcc
     5761 tccgatttta ctggtgaggg acccggagga ctacccatag cgatactgag gagccaagca
     5821 tggaaaccga aatcctctgt gagctcggga tggaaggtaa gggcaaggcg gcgccctgaa
     5881 atcacaccaa ctggctcccc cccattgctc gcagcgacct caacacctgt gcttatcgac
     5941 tcaaaacgtg gagcacggat gaatacgcca ggaaaagaac gtgacaacaa aggagattcg
     6001 atgggggact gaaaggaatc cacttgacga ccgtaggcgt tccgaccgat gcgtgcagga
     6061 atcaaaggtt caccaccgtc ttggggatca cataggagaa tcgcacctgc acacgtacca
     6121 agaactgcag cacctataag acgtaactgt tcgaagagtg cgggaagaag tccactacct
     6181 cccttatcct ctgagccacc ggttaatcgc atgactgttg attcacctcc agggagaacg
     6241 tatgcatcac agggtgtttt gaccacatct tcacgagtac gaagttcatg aattactaga
     6301 ggtgaattga ggtgtttcgc agcattatca agagcacgga tatgggcatg acgggcgcct
     6361 tgaatcatgc agagcccgac ctcaaccatg tacctcccaa gacctcgtgg ctttcagact
     6421 cacggataaa acacgtcaac aatgtacact acgtcagtct tcttgatgaa cccgattcgt
     6481 aaagattcag acatggattc gaagtgggag gggagatgtt ggttcatccc tgggccaaca
     6541 aggctgactg atgccgttct cgcaggtctt tctcacccca caatgaccca cagaagtcca
     6601 gaattcaaat cagtgatggc tgaactacat gggcgactga gacatagttt cgcccttaca
     6661 cccaccacaa tcgaagtagg gcagcaggcc caagagggcg aggacgggta ctcagtggta
     6721 gtggtctcag gatcaggtac tgcggcaatg gagatggtaa ttgcaaatcg atttggatcc
     6781 aacgataatg tcctcgtccc tacaaatgga aaattcggcg aacgcgtcgc acaattatgc
     6841 caacatttcg cgaatttgac tcatctcaaa tatgcttggg ggcaaccatt tgatcttgga
     6901 gaaatagata caatgctatc aactggtaaa catgatgctc tcgctatctg ccataacgaa
     6961 acatcatcag gaatcacgca aaacgcccct gagattgcta agattgctga gaaacatggc
     7021 attccattca tccttgatgg catcacctca gtagggggat tgccagtgca ccctgcggaa
     7081 tggaatgctg aggctgtcgt cgtaggtggg cagaaatgta ccgctgggcc ctctggtatc
     7141 gcagcagtcg cggtatccga acattttgta gaagcgatga tggagaatcg caaaacaaat
     7201 cctgagcagg caatctacta tcttgacctc attcaggcac tcaagaaagc agcagatgat
     7261 cagacaccat ggacgccatc aatcaatttg tgcactggct gggtcgcttc tcttagagaa
     7321 caggacgagg aaggcatgga agaaagatgg acacgatgcg cacgccttgc aaaaggcgtt
     7381 cgaaacctat tcagtgattt aggattcgaa ctctttgctc acgagaatca acgctctgat
     7441 acagttactg cgattctcta ccctgaccca agctggggag aggaatggcg gcgatggatg
     7501 accatggagc aagacacgca tgtaattggt ggccaagacc atgtcaaggg ccgaatcttc
     7561 agagtaggtt cgatgggcgt cactcctatc gaagaaatgg tagaaggatg ccgtaggatg
     7621 attgaaggat ttcggcactt cgggatggaa ttacctgacc tcgatgtaga atcctacttc
     7681 aggtgatcga atgaccagtg attcagagat tgcgaaaata gctctcgaat gcctcgatta
     7741 cactttactc gatgaggaag caacggatga ggacgtgaaa gccttcatcc atcgcgccaa
     7801 tacatacccc cctgcagcgg tatgtgtcct ccctatccac gtcagactag tacggagctt
     7861 attggatgaa ggcatcctac ttgcatccgc tgcgggacta tttcctgatc cagacggaga
     7921 catcaatctc cgaactgagg atgtgaaatt tgcgctttca gagggggctg acgaaataga
     7981 tgtggtgctc gacttcaatg cgatgatgga gggtcgtgaa ggggatgtgc gcgcatccct
     8041 caacgcactc atcgaagccg caggcgacgc accagtgaaa gtcattctag aaacatcctg
     8101 tctcgactac actgagatgg tggatgcctg caaaattgct ctagattcag gagcatcctt
     8161 cctgaaatcc tcaacaggac gtagaggtgg atgcacacca ctcgtggcac aagttcttgc
     8221 tgaatctgct ggagagaaga taggaatcaa actcagtggt ggaatcagaa caatcgaaga
     8281 tgtgcgcatc catatcgaag ccatcgaaga ggactggccg attggaatgt gtacacctaa
     8341 ccggttccga atcggagcat cctcattact agattctatc attgaacatc tgtaaactta
     8401 agccgacgat agttggatat tgattggcga taatcgaatg cctgtaccat agatcagata
     8461 ttccatcgct gcacccttgt cctttcgatt cgacgcgttg ctggacttgc ggatcatcgc
     8521 cgtctctaat ctgacgttga tcacctcatc ccatccttgc ttctgcgcct cttcacggag
     8581 acgctgaatt acttcctcac gcccccatct aatcacac
//
LOCUS       DUKB01000112            6694 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_293452, whole genome shotgun sequence.
ACCESSION   DUKB01000112 DUKB01000000
VERSION     DUKB01000112.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6694)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6694)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6694
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_293452"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1845
                     /locus_tag="HA345_03925"
     CDS             <1..1845
                     /locus_tag="HA345_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84538.1"
                     /translation="ATVNVIAQFTAPDDAVPGPVEITLLTNAVPPASAQSTWSIQIEV
                     PPVTDLSISAMSDDINAPSNGQMVQVEMTLVNNGNSDENYNLSILADYRLDASLSIVS
                     TGLLDAFGGDTTVYLILPMPYGLRPDIYLVEVTATSESDPNYEVVQQIRLTVPPTYEL
                     IVEDLDMSGQTFSPGDSCRTGKWEITNVGNMDDRFSITVDHPDSITVELRDVNGQPLS
                     PAETPVVAPGSSYNVTFCYAFVEGTSGSQTLSLTGASINYDGSGVAPSDTGSAVFDVG
                     TQGWINVVGQGPMVIDRAIQTETLTFELHNRHPTVSQQIRLDISANEMTAYGFNPRIV
                     ETDREFQLGPDQRRIITVELDPSEVALLNLPEDQITRNFTLEIDADLDTVEYLQEITF
                     VRMQSGSEETASGYDIINILGVIFGVLVVIALLVVFVRIIMGTQQIEDEVVSLADYQS
                     SVADKYREIAPAPEIPTAPTMMPSQNAFTAPPAASAPAEPIYAPAPAVPAVAPAEPVY
                     APAPAVQAVAPPPEINVPLEFSNSVFAKVISQNGIQDGAAFLSFAGGYDADGNGYLRQ
                     SELERAASEYVAGGHNQPATSPAFTDEQLIASGWTQEQIDAARASGQI"
     gene            1935..3545
                     /locus_tag="HA345_03930"
     CDS             1935..3545
                     /locus_tag="HA345_03930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit"
                     /protein_id="HIH84539.1"
                     /translation="MQSGQQPIFILKEGTTRSRGKTAQSNNIAAAKAVADAVRTTLGP
                     KGMDKMLVDSMGDVIITNDGATILKEMDIEHPAAKMIIEVAKTQEAHCFDGTTSAVVL
                     AGELLKRSEDLIEQNVHPTIICEGFRIAAERCLELLGNHSISVSPEMLHEVAKTALTG
                     KSAGAVKAFLAEICVDAVLKVATQEDGEIMVDLDDVKVEKKQGGSIKDSTLIDGIILD
                     KERVHSGMPRSINGAQVALINSAIEVKKTEVDAKIQITDPNMLAQFLDEEEGYLKGLV
                     DTILASGANVVICQKGIDDLAQHYMSKAGVFAIRRAKKSDMEALSKATGGRIVTNIDD
                     LGADDLGRCDKVEERKIGESDMVFLTGCDEAKSVSVLLRGGTDHVVDEIRRAFDDAIG
                     VVSVAHEDGAVLTGGGSVLAALSRDLRTFAEGVGGREQMAIEAFAGALEVIPRTLAEN
                     AGLDPVNTIIDVRKAHAEGKSTFGVNVFEGGVMDMKDANVVEPVRVVEQAIQSATETA
                     TMILRIDDVISSKGVSLGHEGMMDGMDL"
     gene            3628..5880
                     /locus_tag="HA345_03935"
     CDS             3628..5880
                     /locus_tag="HA345_03935"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012481.1,HMM:NF024485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84540.1"
                     /translation="MSDDLVQFLTAGDRTLNILFGSQSGNSEDLASKIGKQASSYGLE
                     STVHDMGEVDAAALSGMKRVLIVCSTWGEGEQPDNAEDLWNAANGDSAPNLSSTNFSV
                     CALGDTSYELFCESGKEWDKRFEELGGKRLLDRVDCDVDYDKPAAIWAEMALPRMAAV
                     DGEGLFQDDKVASIADFVSSGGSLQASAAPAPTSDDAGSNAVTQGGSDTQVFMHEGDR
                     SLHILFGSQSGNAEGLAAKIGKRASAYGLDANVHDMDGFDVSSLSGMSRVLIVCSTWG
                     EGEQPDNAEALWVAANSDGAPSLGHTHFSVCALGDTSYELFCESGKEWDKRFEDLGGT
                     RLVDRIDCDVDYDAPSAIWTESVLAHMAAVDGNGTFQAEMVELIIEELQGGADVAVDG
                     DNGFVIPNLESEELQVNVQVFRYDCMDGERGTDEWACVLPGNMSVLQVLRTMKATEDG
                     SLTFRDGPANDPCTVISVNGRNVLPGLTKISDIASSVNGSWKIVIEPLPGGEVIRDLV
                     VDLSIHDIRRSSLKPWFHGATRDGREFSQGVIGSLASSEATEIHSIRDFTSSILVDSF
                     SDVMPYNPSYVGPSNIISMWSRVTDPRTSEANRAEHMSSLSSMGGIKAETDLSSISRN
                     GQLGMRISSHMLDAKTSVLRDGAFSDSRHGKHVWWYCWSVKMSGKVNDAVIYRQVLGP
                     IGLIGNLFSGISARMILGFTRTGGRVFNGLLGMVAPPAGVGKMPKQFNTLVKNHHEVV
                     AIYNEIGSGF"
     gene            5880..>6694
                     /locus_tag="HA345_03940"
     CDS             5880..>6694
                     /locus_tag="HA345_03940"
                     /inference="COORDINATES: protein motif:HMM:NF014774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84541.1"
                     /translation="MASTYAYHPGNVAHSSAMEIEDTIPLIARSLGIDLIPLDGATSC
                     GAGIIRQANRRLQLTLNARTFAMAEALGLEILTPCAATAGNLCEDLDELRRNPDLLAD
                     VNRTLHSTCDMQFSGGTEVRHLMHVIVEDIGLEKLEEKVVNPLDFKISGYYGPNIQRK
                     GACGLDDVFLPNYLENVIDAVGGTPISLDSRTQSVGVPSLLSEESTALKQAAGVLSEA
                     VDEGAELLVSICNLSHAVLDVYQVKASRISGLETRIPVIHFTDMLAYSFGHLNT"
BASE COUNT         1640 a         1499 c         1771 g         1784 t
ORIGIN      
        1 gccactgtca atgtcatcgc tcagtttact gctccagatg atgcagtccc tggcccagtc
       61 gagattacgt tgctaaccaa tgccgtgcct ccagcaagtg cgcaatcgac ctggtcaatc
      121 cagattgaag tccctccagt gactgacctg agcatttctg cgatgtcaga tgacatcaat
      181 gctccatcca atggtcagat ggttcaggtc gaaatgactc tcgtaaacaa tggaaatagt
      241 gatgagaatt acaatctcag tatccttgca gattaccggc tggatgcaag cttgtctatt
      301 gtgtccactg gattgctcga tgcctttgga ggcgatacca cagtatatct gattctacct
      361 atgccctatg gtctccgccc tgacatttac ttggttgagg tgacagcgac ttcagagtct
      421 gatccgaact acgaggtagt gcaacagatt cgtctaacgg tcccacctac ttacgaacta
      481 attgtcgagg atctcgacat gagtggccag accttctctc caggtgactc ttgtcgcacg
      541 ggtaaatggg agataaccaa cgtgggaaat atggacgacc gcttctcaat tactgttgat
      601 catcctgact ccataaccgt cgaacttcgc gacgttaacg gccaaccttt gtcgccagca
      661 gagactcctg ttgttgcgcc aggtagttct tacaacgtga ctttctgtta tgctttcgtc
      721 gaaggcacaa gtggctccca gacattgtct ttaacggggg catcaatcaa ttacgatggt
      781 tccggagtcg ctccctcaga cactggatct gcagtgttcg atgttggaac tcaggggtgg
      841 atcaatgtcg tgggccaagg tccgatggta attgatagag caatccagac cgagactctc
      901 acgttcgaac ttcacaatcg gcatccaacc gtatctcaac aaattcgctt ggatatcagt
      961 gcgaatgaga tgactgccta tgggttcaat cctcgtatcg tcgagacaga tcgagagttc
     1021 cagctcggtc cggaccagcg acgtatcatc acagtcgagc ttgatccctc tgaggtcgcc
     1081 ctcctcaacc tacctgaaga tcagattacg cgtaacttca ctctagagat tgatgccgat
     1141 ctcgacacag tcgaatacct tcaggaaatc accttcgtgc gtatgcaatc tggatccgag
     1201 gagacggctt ctggttatga catcataaac atccttggag tcatcttcgg cgttctcgtt
     1261 gtcatcgccc tcctagtggt ctttgttcga attatcatgg ggacgcagca gattgaggac
     1321 gaagttgtca gtctagcaga ttaccaatct tctgtggcgg acaagtatcg tgaaatcgcc
     1381 ccggctcctg agattccaac agcgccaacc atgatgcctt cacagaatgc gtttaccgcc
     1441 ccacctgcgg cgtctgcacc tgcagaaccg atctacgcac ccgcccctgc tgtaccggcc
     1501 gtggcgccag ctgaacccgt ctatgctcct gctcctgctg tgcaggccgt ggcaccaccg
     1561 ccagaaatca acgtcccact ggaatttagt aacagtgtat ttgcaaaagt aatcagccag
     1621 aatgggattc aagatggcgc tgccttcctt tcctttgcag gaggttatga tgcggatggg
     1681 aatggctatc tccgacaaag tgagttggag agggccgctt ctgagtatgt ggctggtggg
     1741 cacaaccaac ccgctacatc gcctgcattc acagatgagc aactgattgc cagcggatgg
     1801 acacaagaac agattgatgc cgcacgagcg agcggtcaaa tttagtattc tagggtctct
     1861 tagtagcctt cccgccttcc cgtgccctta aggggcaatg cttggtcggc gggatgtcgg
     1921 atggagcgat aatcatgcag tcgggacagc aaccaatctt cattctcaaa gaggggacga
     1981 cccgcagtcg tggtaagact gcacagagta acaacatcgc ggccgctaag gctgtggccg
     2041 atgcggtgcg tacgacgctt ggcccaaaag gcatggataa gatgctagtt gattccatgg
     2101 gtgatgtcat catcaccaac gatggagcta caattctgaa ggagatggat attgaacatc
     2161 cagcggccaa gatgattatc gaggttgcta agacccagga ggcacactgt ttcgatggaa
     2221 caacatctgc agtcgtactt gctggagaat tactcaagag atcggaggat ctaattgaac
     2281 agaatgttca ccctaccatc atttgtgaag ggttcaggat tgcggctgag cgttgccttg
     2341 aactgcttgg aaatcactct atatcggtaa gtccagagat gctccatgaa gtagcgaaga
     2401 cggctcttac cgggaagagt gcgggggcag tcaaggcctt ccttgcagag atttgtgtgg
     2461 atgctgttct caaggttgcc acgcaagagg atggagagat aatggttgat ctcgacgatg
     2521 tcaaggtcga gaagaaacaa ggtggttcaa tcaaggatag tactcttatt gacgggatta
     2581 ttctcgacaa ggaacgcgtc catagtggaa tgcctcgctc cataaatggc gcccaagtcg
     2641 ctctcatcaa ctctgccatt gaggtcaaga agaccgaggt tgatgcaaag attcagatca
     2701 ctgatccgaa tatgttggct caattcctcg atgaggaaga aggttatctc aagggccttg
     2761 tggatactat ccttgcatct ggtgccaatg tagtcatttg tcagaagggg attgatgatc
     2821 tggctcaaca ttacatgtct aaggccggcg tctttgcaat tcgtcgcgcc aagaagtcgg
     2881 atatggaagc tctatcgaag gcaactggtg ggcgaatagt cacgaatatc gatgacttag
     2941 gtgcagatga tctaggccgt tgtgacaagg tcgaggaacg caaaattggt gagtcagaca
     3001 tggtattcct tactggctgt gatgaagcaa agagtgtaag tgtccttctt cgcggaggaa
     3061 ctgatcacgt tgtggatgaa atccgtcgtg cttttgatga tgcaatcggg gttgtcagcg
     3121 ttgcccatga ggatggcgcg gttttgaccg gtggtggcag tgttcttgct gcgctcagtc
     3181 gagatttgcg aactttcgct gaaggtgtag gtggacgtga acagatggcg attgaggcat
     3241 tcgcaggtgc cctagaggtc attccgcgaa cacttgctga gaatgcgggg cttgatcctg
     3301 tgaataccat cattgatgtc cgtaaagcac acgctgaagg gaagtcaacg tttggcgtga
     3361 atgtattcga aggtggtgtc atggacatga aggatgcgaa tgttgtggag cctgtcagag
     3421 tggtcgagca agcgattcag agtgcgactg agaccgctac tatgattctg agaatcgatg
     3481 atgtaatctc atctaagggt gtcagcctcg gccatgaggg tatgatggat ggaatggacc
     3541 tctgagcagg tccttcaccg aaccctgtcc cgctatattc aataatccca ttctgttgct
     3601 ttagttcatc tgatagggtg caaagatatg tcagatgatt tggttcagtt tttgactgct
     3661 ggtgatcgca ctctaaacat cttatttgga tctcaaagcg ggaattcaga ggatttagcc
     3721 tctaagattg gaaaacaagc ctcttcctat ggtttggaat ccacagtcca tgatatgggg
     3781 gaggtcgatg ctgctgctct ttctggaatg aagcgcgttc tcattgtctg ttctacatgg
     3841 ggtgaaggag agcaaccaga taatgcagaa gatctctgga atgctgctaa tggagactct
     3901 gctcctaatt tgagttcaac aaacttctcg gtttgtgctc taggagatac gagctatgaa
     3961 ttgttttgcg aatccggaaa ggaatgggat aagcgctttg aggaattagg tggcaagagg
     4021 ctattggata gggtcgactg tgatgtcgat tatgacaaac ctgcagccat ttgggctgaa
     4081 atggcccttc ctcgaatggc tgctgtagat ggagaagggc tatttcagga cgacaaagtc
     4141 gcatctatcg cagatttcgt ttcatcaggg ggttcgttac aagcatcagc tgcccctgct
     4201 cctacatcag atgatgcagg ttcgaatgct gtaactcaag gaggaagcga tactcaggtt
     4261 ttcatgcatg aaggtgatcg ttcgttacac attctattcg gttcacagag tggtaatgcc
     4321 gagggtttgg ctgcaaagat tggcaagcgt gcctctgcat atggcctaga cgctaacgtg
     4381 cacgatatgg atggattcga tgtgtcctct ctatctggga tgtctcgagt cctgattgtt
     4441 tgttctacat ggggtgaggg tgagcagcct gacaatgccg aggcactctg ggtcgctgcg
     4501 aattcggatg gcgccccatc tcttggccat actcatttca gtgtctgtgc acttggagat
     4561 acgagttacg aactcttttg tgagtctggt aaggaatggg ataagcgctt tgaggatcta
     4621 ggaggtacac gtttagtcga ccgtattgat tgtgacgtgg attacgacgc accttcagca
     4681 atctggactg aatcggtcct tgctcacatg gctgcagtag atggaaatgg caccttccaa
     4741 gcagagatgg ttgaactcat catagaggag ctccaaggtg gcgcagatgt cgccgttgac
     4801 ggagataacg gttttgtcat ccctaatctt gagtcagaag aactccaagt caatgtccaa
     4861 gtgttccgtt acgattgcat ggatggggaa cgtggcaccg atgaatgggc atgcgttcta
     4921 ccggggaata tgtcagttct tcaggtgctt agaacgatga aagcaacaga agatgggtct
     4981 cttacttttc gagatgggcc agcaaatgat ccgtgcacag taatttcagt caatggacgt
     5041 aatgttctac caggtctgac taagatttct gatatcgcat cttcagttaa tggctcttgg
     5101 aagatagtca ttgaaccgct tcctggcgga gaggtgattc gagatcttgt ggtcgatctt
     5161 tctatccatg atattcggcg ttcatctctc aaaccttggt tccatggtgc tactcgagat
     5221 ggcagagagt tctctcaagg agtcattggt tccttggctt cgagtgaggc taccgaaata
     5281 cactcgattc gcgactttac tagttctatt ctcgtggatt ctttttcaga tgttatgccc
     5341 tacaatccat catacgttgg cccatctaac attatctcaa tgtggtctag ggttacggac
     5401 ccacgtactt ctgaggcgaa tcgggctgaa cacatgtctt cgctttcatc tatgggtgga
     5461 ataaaggctg aaacagacct ttcatcgatt tcaagaaatg gccaactagg aatgagaatt
     5521 tcaagtcaca tgcttgatgc caaaacgtca gttttgagag atggtgcttt ttctgattcg
     5581 cgtcatggca agcatgtctg gtggtattgt tggagtgtca aaatgagtgg taaggtgaat
     5641 gatgctgtaa tttaccggca ggtattgggt ccaatcggat tgattggcaa cttgttttcg
     5701 ggaatatctg ctaggatgat tctcggattc actcgaactg gtgggcgcgt cttcaatggc
     5761 cttctgggta tggtggctcc acccgctgga gtgggtaaga tgccgaaaca attcaacacg
     5821 ctggtcaaaa atcatcacga ggttgtcgcg atttacaatg agattgggag tggtttctga
     5881 tggctagtac ctatgcatac catcctggaa acgtagctca cagtagcgcc atggaaatcg
     5941 aggatactat cccattgatt gcccgctcac ttggaattga tctcatacct cttgatggtg
     6001 ccactagttg tggtgcagga ataatccgtc aagcaaaccg tcgtttacaa ttgacattga
     6061 atgctaggac attcgcaatg gcagaggcat tagggttgga aattctgaca ccttgtgcag
     6121 cgactgcagg taacttgtgt gaggatttgg atgaactccg ccgtaacccc gatttgctcg
     6181 cagacgtcaa tcgtacattg cattccacat gtgatatgca gttttcaggt ggcacggaag
     6241 tccgacacct catgcatgta atagtcgaag acatcggctt ggaaaagctc gaggagaagg
     6301 tagtcaatcc tcttgatttc aagatctcag gctactatgg gccgaatatc caacgtaaag
     6361 gagcatgtgg attagatgac gtattccttc caaattatct tgaaaatgtg atagatgcag
     6421 ttggagggac tccaatctct ctagatagta ggactcagag tgtgggtgtc cccagtttgc
     6481 tttctgagga atctactgca ttgaaacaag cggctggagt cctttccgag gcagttgatg
     6541 agggtgccga attactcgtc agtatctgca acctttctca cgcggtccta gatgtgtacc
     6601 aagtcaaggc atcaagaatc agtggcctag agactcgtat tccagttatt catttcactg
     6661 acatgctggc ttattctttt ggccacttga atac
//
LOCUS       DUKB01000113            4804 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_65539, whole genome shotgun sequence.
ACCESSION   DUKB01000113 DUKB01000000
VERSION     DUKB01000113.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4804)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4804)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4804
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_65539"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..412)
                     /locus_tag="HA345_03945"
     CDS             complement(<1..412)
                     /locus_tag="HA345_03945"
                     /inference="COORDINATES: protein motif:HMM:NF020893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HIH84542.1"
                     /translation="MEHAGLIRRVWWLTSMELPSSVASVVDWLDSLGLIGLGLLTFTE
                     AIIQPIPPETILIPMAMNETSYFGAFLISLVATLTSVSGAIIGYWIGGRAGRPLIERF
                     ASERNVTRLDNLVTRYGLAGIFITAISPIPYKVFG"
     gene            464..967
                     /locus_tag="HA345_03950"
     CDS             464..967
                     /locus_tag="HA345_03950"
                     /inference="COORDINATES: protein motif:HMM:NF028455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84543.1"
                     /translation="MVGAARVLDTGALLNLPPNRLSGGLVANSQREEIARVDKDRSLL
                     IEGLRLHWRNPSAEALQRAKEAAQASGDISGLSSVDLDVLAIAIEHRAIVVSDDHRIQ
                     NVAGLHGVGWHPVLNEGIKEHWEWVLECKGCKKLHAPPENVSRFRRTYGSCDDCGSKL
                     KLKRGGS"
     gene            complement(981..1268)
                     /locus_tag="HA345_03955"
     CDS             complement(981..1268)
                     /locus_tag="HA345_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008525164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HIH84544.1"
                     /translation="MAPGTVEIAIVVGLFFILFGPTQLPKLARSLGQAKTEFNRGLTE
                     GGGESDTEADMERGGRTENVALTEDAASKGIDVEGKTIDEVKEAVQSAEDE"
     gene            complement(1333..1584)
                     /locus_tag="HA345_03960"
     CDS             complement(1333..1584)
                     /locus_tag="HA345_03960"
                     /inference="COORDINATES: protein motif:HMM:NF014636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HIH84545.1"
                     /translation="MAEVFAWRIHLRFFGPVQDKTGVKETVMSVVEGTTVNDIIGRLQ
                     LNSWMGGQLKTAIDGRIAGRDETLHDGAELAFLPPVSGG"
     gene            1659..2345
                     /locus_tag="HA345_03965"
     CDS             1659..2345
                     /locus_tag="HA345_03965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017545336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84546.1"
                     /translation="MNEVLGVEDLWRIYPMGDSQVKALRGVSVSILEGEMVAITGPSG
                     SGKTTLLNCISTLDAYDQGSVRFDGVDLSTMGEAERTRLRGREMGFIFQQYHLLPVLT
                     AIENVELPLLLMGVEHKEARQRASGTLKLMGLETRSNHRPSELSGGQQQRVAIARAIV
                     HEPRVLFADEPTGNLDSATSKSILSALDELNRAKGLTIILVTHDEEVSSRCGRILSLA
                     DGCLLSLEEE"
     gene            2351..>4804
                     /locus_tag="HA345_03970"
     CDS             2351..>4804
                     /locus_tag="HA345_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84547.1"
                     /translation="MSRVRTLAPWLLECLVAAVLAAYLLITQSRVSLWLLAVSIHVVL
                     RVIIHASLSSRIRMLASIAFRDTTARRRSIAIVFFGLMLGSAVITSSFAVGDSFDATL
                     EDRLVSSLGQTDWVIEGTDPISGMPVMMNQVRIQQALDVLLSDPLVDGVGIELHTPAS
                     AIRIDGSKVDPSAVWLAPDLSARSDGPWYTPSSGWSPLIEADGIGNEPAFVNQAFADS
                     MGLEIGESVDLSWTVILDGETSRQSQRFEIIEVLPSTGIGWPVAVQPLLITDIDRAQV
                     LRNLTGIITRAVVSGQGDVMEGYAHEEVEGLIENAFSDSMVGEDSGFSWSSAGPGETT
                     VLSRTSAGGLLQSGDVSGIDSSLTGVSQGLSSRSIAILPIGDVFLDENRLTILPGSEV
                     LGVYPVGPLESSEVAIITDEGIVKIGSDDEVSIEIIDGIEKSFSSTHFYDGSTIHSIA
                     SVNWNPAGAPILPPTSGPFSMIVSDTAYASFTIAGSAHLVRYDGLNWVPIPVGLTGSV
                     DSSILATDGEIAAVLYSGIFGSHVCKVVSNTTVCIDSGSSNTITVVDGNVLLHGPNGV
                     GVWVDGQGLVQSSLDADSVLGLTSAGVVVDNGTLLVPDANGSSLIDGPSLPPNSDGRF
                     VLIHDETLLASTPLGIVSTSPYRANRPFLFDGHEIGLGIRVPTLLIAEDGELEFGDSD
                     LRLRSDFIDNSSYLEVEKHLSKDRHLLNISEGAITVSDLLLYDSELESIESAVLGAIT
                     MAAAERILGTGVPRTSIQVELPLDPILAAQVIDALDDWADARADISSSDVSIVSVKSE
                     AVLSIEGAGESFSILFLTFG"
BASE COUNT         1049 a         1161 c         1256 g         1338 t
ORIGIN      
        1 atccaaacac tttgtacggg attggagata tcgcagtgat gaatatccct gcgagaccat
       61 atcgggtcac caaattatcc aaccttgtca cgtttcgttc ggaagcaaac ctctcgatca
      121 ggggtcgtcc tgctcggccc cctatccagt accctatgat ggctccactg accgaggtta
      181 aggtggcgac gaggctgatg aggaatgcgc caaaatagga tgtctcgttc atagccatcg
      241 ggattaggat agtttcggga gggattggtt gtatgattgc ttctgtaaaa gtaagaagtc
      301 caagcccaat caagcctagg ctgtccagcc aatcaaccac ggatgcaacg ctggatggaa
      361 gttccatcga ggtaagccac catactctgc gtatcaaacc cgcgtgttcc acgccatgta
      421 atcagccgta tgtctcaata gggagtgctc accagtcctg ctcatggtcg gtgcagcccg
      481 agtcctagat actggtgcac tgctgaactt gccgccgaat cgcctgtctg gcggtttggt
      541 cgcgaacagc cagcgggagg aaatcgctcg cgtcgacaag gatcgctctc ttctaattga
      601 gggccttagg ctccattggc gaaatccttc ggctgaagct ctccaacgtg ctaaggaggc
      661 agcacaggcg tcaggagaca tctcgggtct atcttcagtt gatctcgatg tgcttgctat
      721 tgccattgag caccgggcaa ttgtcgtttc agatgaccat cggatccaga atgtagccgg
      781 actccatggt gtagggtggc atcctgttct taacgaggga atcaaggagc attgggaatg
      841 ggtcctagaa tgcaagggtt gtaagaaact ccatgctcct ccagagaatg tgtcaagatt
      901 ccgtcgtaca tacggtagtt gcgacgactg cggttctaaa ctcaagttga agcgcggcgg
      961 ctcctgagta aaaggtcgat ttattcatct tcggcggatt ggaccgcttc cttgacttca
     1021 tcgatggttt tcccctcgac atcaatgccc ttagacgctg catcttcagt gagtgcgacg
     1081 ttttcagtac gtcccccacg ttccatatct gcttctgtat cagattcccc tcctccttct
     1141 gtgagcccac gattgaactc agtcttcgct tgaccaaggg atcgagccaa ttttggaagt
     1201 tgggttggtc caaagaggat gaagaacaga cctacgacga ttgcaatctc aacagtgccc
     1261 ggtgccatga ggctcccaga ggctcctact tgaaaacgga ttcccgttga atgcgttctt
     1321 caatacgttt catcagccgc ccgagaccgg cggaaggaac gcgagttctg ccccgtcatg
     1381 gagtgtttca tctctaccgg cgattcggcc gtcaatcgcc gttttcaatt ggcctcccat
     1441 ccaactattg agttgtaatc gcccaatgat gtcgttaaca gtcgtaccct cgacaacgga
     1501 catgacggtc tcctttactc cggttttatc ctggacaggc ccgaagaatc tgagatgaat
     1561 tctccatgcg aagacctccg ccatatgcct cccaatcatt ggatggtatt tcacgactcg
     1621 gaacaggtgt tatgactctc cgaggtgcag tagggggcat gaacgaggtt ctcggtgtcg
     1681 aagacctctg gcgtatctat cccatgggag actcacaggt caaggctctc cgtggtgttt
     1741 ctgtttcgat tttagagggg gagatggtgg cgattactgg gccatctggt agtggtaaga
     1801 caacactcct caactgtatc tcgacgcttg atgcttatga tcaagggagc gtccgattcg
     1861 atggcgttga tttgagtacg atgggggaag cagagcggac tcgtctccgt ggccgtgaga
     1921 tgggtttcat tttccagcag tatcatctgc tcccggtcct cactgcgata gagaatgtgg
     1981 aactccccct cttgttgatg ggtgttgagc ataaggaggc ccgtcaacgc gcttctggta
     2041 ctctcaaact gatgggcctg gaaacccgtt cgaatcatcg tccttcggaa ctctctggtg
     2101 ggcaacagca gagagttgcg atagcccgag caattgtcca tgaaccccgt gtattgtttg
     2161 cggatgagcc aaccggtaat ctggattctg cgacctctaa gtccattctc tcagccctgg
     2221 atgaactcaa ccgagccaag ggcttgacaa tcattctggt aactcatgat gaggaggttt
     2281 cttctcgatg tggccgcata ctatctcttg ctgatgggtg cctcctcagt ttggaggagg
     2341 agtgaccggc atgagccgtg tccgtacttt ggcaccctgg ttgttagaat gtctagtcgc
     2401 ggctgtgttg gcggcctatc ttttgattac acagtccaga gtatccctct ggcttctcgc
     2461 agtaagtatc catgtggtcc ttcgtgtcat cattcatgcg tcactctcct caaggatccg
     2521 catgttagca agtatcgcat tcagagatac tacagcgcgt cgtcgttcga ttgcaatcgt
     2581 tttctttgga ctcatgttgg gctctgcagt tatcaccagt tcattcgcag ttggagatag
     2641 ctttgatgcg actcttgagg atagattagt atccagcctt ggtcagaccg attgggtcat
     2701 cgaaggtacg gatccaatat ctggtatgcc tgtaatgatg aatcaagtta gaatccaaca
     2761 ggcccttgat gtgctcctat ccgacccctt agtggatggc gtgggtatcg agttacacac
     2821 tcctgcttcc gctattcgga ttgacggttc aaaggtagat cctagtgcag tatggctcgc
     2881 cccagatctt tctgcacgtt cagatgggcc ttggtacact ccatcatcgg gatggtctcc
     2941 attgattgaa gcagacggga ttgggaatga acccgccttt gtcaaccaag ctttcgccga
     3001 ttcgatgggt ctcgaaatag gcgaatcagt cgatctttct tggacggtga tattagacgg
     3061 agagacaagt cgacagagtc aacggtttga gataatcgaa gtccttccat caacgggtat
     3121 tggttggcct gttgctgtcc aacctcttct gattacggat atcgatcgcg ctcaagtatt
     3181 gcgaaatctc actggcataa tcactcgagc agtggtgtcg ggtcaagggg atgtcatgga
     3241 ggggtatgct cacgaggagg tcgagggcct gattgagaat gctttttcgg attcgatggt
     3301 aggagaagat tctggttttt cgtggtctag tgcgggtcca ggtgagacaa ccgtcctatc
     3361 acgtacaagc gcaggggggt tgttgcaatc cggggatgta agtggtattg attcgtctct
     3421 gactggagta tctcagggat tgagcagtcg ttcaatcgca atattaccaa taggcgacgt
     3481 ttttttggat gagaatcgtt tgacaattct tcctggaagt gaagtattag gtgtctatcc
     3541 cgtgggtcct ttggagtcat ctgaggttgc aatcatcacg gatgaaggca ttgtcaaaat
     3601 tggctcagat gatgaggtca gtatcgaaat aatcgatggt atcgagaagt ctttctcttc
     3661 cacgcatttc tacgatggtt ccacgattca ttctatcgct tcggtgaatt ggaaccctgc
     3721 tggtgctcca atcttacccc ctactagtgg tccgttctcg atgattgttt cagacacggc
     3781 ctatgcttcc tttaccatcg ctggttctgc acacctcgtg cgttacgatg gtttgaactg
     3841 ggttccaatt cctgtaggtc taaccggttc tgtagattcc tccattctcg cgacagatgg
     3901 tgaaatagcg gcggtattgt attcaggtat cttcggatct catgtctgta aggttgtctc
     3961 gaacactacc gtctgcatcg attccggttc gtcgaataca attacagtgg ttgatggaaa
     4021 tgtgttactg catggtccta acggagtagg tgtgtgggtt gatgggcaag gtttggtcca
     4081 atcatcactg gatgcggact cagtcctcgg cttgactagt gctggtgttg ttgtcgataa
     4141 cggaacactt cttgtccccg atgccaatgg ttcttcgtta atcgatgggc cctctttgcc
     4201 tccgaattca gatggcagat ttgttctgat tcacgatgaa acacttctcg cttcgactcc
     4261 tctcggtatt gtatccactt cgccttacag ggctaatcgc ccgttcctct ttgatggtca
     4321 cgaaatcggt ctaggtattc gagttccgac cttattgatt gcagaggatg gcgaactcga
     4381 attcggagat agtgatcttc gtttgagatc cgatttcatt gacaattcct cctatttaga
     4441 ggtcgagaag cacctctcaa aggaccgcca tttgttgaat atcagtgagg gcgccattac
     4501 ggtatctgat ttactcctgt atgattctga actagaatca atcgaatctg cagttctcgg
     4561 cgcgattacc atggcggctg ctgaacgaat cctaggaact ggtgtgcctc gaacctcaat
     4621 ccaggtggaa ctcccactgg acccaatcct agccgcccaa gttatcgatg cgctcgatga
     4681 ttgggctgat gcacgagcag atatttcttc gtctgatgta tctattgtga gtgtcaagag
     4741 tgaagcggtc ttatcgattg aaggtgcagg cgagtcattt tccattcttt tcttgacctt
     4801 cggg
//
LOCUS       DUKB01000114            6022 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_151255, whole genome shotgun sequence.
ACCESSION   DUKB01000114 DUKB01000000
VERSION     DUKB01000114.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6022)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6022)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6022
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_151255"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..737
                     /locus_tag="HA345_03975"
     CDS             <1..737
                     /locus_tag="HA345_03975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84548.1"
                     /translation="EMYAYEPSNIDLWSLNSVIFIATDPSGSIATSNPIDFTVIAATF
                     TASTDFTGILEDGEAVNFTGTGRPGQAVNAKIGGVPVGQTAVADDGTWSMIIESSRYS
                     PGTNVVEFTYGGSSDIMIQKTVERTGGEDEGMSIGATFLLGVGSLAILALLGGVFVFF
                     FVEFEDDDEDDLLDDGSSTSEAEDDPYAWAKERMAAEGAAAPVQQATAQPQPQAAVQQ
                     PGGYPGWRWDQTTQQWVPDPSSVQDQ"
     gene            786..3299
                     /locus_tag="HA345_03980"
     CDS             786..3299
                     /locus_tag="HA345_03980"
                     /inference="COORDINATES: protein motif:HMM:NF024816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH84549.1"
                     /translation="MAVIPRPGVQDRILLHLRDFSEYSESIEVPFSISQMGIANAVSI
                     ARSNVPRAIAGLKEEGILIERQAHISGVSRKRKAYFLTDIGLEHADRVYEEYAAFEFE
                     MIASGGSKTVTIATSPDHLPFPMRAVDIIRYIDHSGALDVRVLTPEIVERDLSKHIEK
                     QLVNSLSDLPRTGRFYGRVTEIANFVAILEPQSATLLVPGIAGIGKTSMASRLIEEFT
                     HKRNLLYHRCQERDGSRPFLEAMGEWLLQIGHADLADYLDAGGVAQVDVATEMIIDGL
                     RKIPALIVIDDLHKVSDETLIGIIRSMTLRLGSCENVGLVLFSRSYRMVVPQKDAEGK
                     IRTFVTPLDGLNQEACRNLLDQIPDLDATMFIHLYNLARGHPMVLKLINQGGVGDTFH
                     ESLENFVEEEIFRRLTGSEKRLLGALAVFRDAVPIEAISGLDVNMDLMDDLVEKGLAR
                     QIDSETFDVHDLIREFLLVSMENELRQELHINAASHYRKVRTTRSEHLEFLHHLAASG
                     EILEFAETLSSVGNSLVAAGHVSLLGIIDSIDTSDLADEYLVDILETKGDLLILQNRW
                     EDAEACHNEALPIAKNLKRADQGARLLSSLADIEVHHGRLESALKLLDQSLAVFIETR
                     DAIAAARTYLNIGSIHRRRRSHKQALDAYENVEKILSTSSSSELVASRIRLASALLDM
                     NEIDRARKHAMDAHDETKESEPHLHARARIVLGRLYSKTDDLELAVHHYSEALSALAE
                     EPDHRNSVEIKMLIGEVMMDTGRQEEAMEYYLDALAVAEANDHRMLIGEILARMGSSD
                     PNRTNRMAHLQRALVVFRELGANDRMRDVQASVHRALLG"
     gene            complement(3296..3763)
                     /locus_tag="HA345_03985"
     CDS             complement(3296..3763)
                     /locus_tag="HA345_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84550.1"
                     /translation="MTINQRDEDAAATEIGYILTFFLGLMFLTTFSVWTFDIQQATEE
                     RWTNEAIQENLREVAEAIERADAAMRIDSNASYAEPVYLRLSADTGLGLILLLTEESV
                     TITDTSEARMFTQDISAASDATHSGETNLAGVSIVWISLQQGNITVGLEQPGF"
     gene            complement(3760..6012)
                     /locus_tag="HA345_03990"
     CDS             complement(3760..6012)
                     /locus_tag="HA345_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84551.1"
                     /translation="MRRDLRQENEDAVTAAVATVLLFAIVLSIISGMMAMIVPTMAEL
                     QGAVDRETMEGQFTDLAQETVRLSEAGLPGDRSEMMIQPHTGDVSWNLRRGGTWYTAT
                     LVEDQTLRLNSMNDLDSVIEHRYPGGDLTSMCLTDLRAHIDAEHRHISPQANGKMLVT
                     PVASLQTSLERVTVNDGVDTHRIRAGNVIEIDSNQDSPAMAISSMPMRAIFFQGDGGM
                     ATFAPDSPEPTGMGRSWTIPAMTGNTTILLYSTETFTAVTHAGDTIQSLDSVVQSTVE
                     PDGSQGRIAMVETTITLAESMAIEVTTSTSAHMIVKQGESTSGSTALLDQTGSTSGTT
                     FLFPASSNELLIHNPGLLSTSVEINGLYHSVGARDTARIAMVSGQGGWIVSGSPVQAH
                     IVADGTEASRTASLDYLHSTSTGRTSASTWSNIVGGSPHGSELMIQRLGHDVNLEHLD
                     NIAPSFASTTVINESSPRMSIEWISAEGGRIEMTAERPFDQGESPVRAYISHGDSGLI
                     DLRSMGEDRCVEIDDRISGWTQNHLPWADVSFLSDGGVIDAWIAGEHPVGLLATMRGP
                     HADDPHAAVGLGWSIPLPRMDYTFSSSVSGLEIGWRGGFVGTNHPEYVATTIEVPPSR
                     EGPGPRIAVTIPVVIPDISLDTGTSDHKTTLTLLTRSQLASISAHEVRRGWDGPYGAS
                     IASQDAIDLDSSTDWLTYPGRLDLLNDYVGWVQPTPTSTESIYHAGGGPVSFNLQMAL
                     IEHDAVVIDG"
BASE COUNT         1437 a         1422 c         1548 g         1615 t
ORIGIN      
        1 tcgagatgta cgcctatgag ccatctaaca tcgatttatg gagcctcaac agcgtgatat
       61 tcatcgcgac agatccgtct ggttcaattg cgacttctaa tccaattgac ttcacggtga
      121 ttgcagcaac attcactgca agcaccgatt tcaccggtat tctcgaagat ggcgaggctg
      181 tcaacttcac aggtacgggt cgacccggtc aggcagttaa tgcgaagatt ggcggggttc
      241 ctgtcggtca gactgctgtt gctgatgacg gcacatggtc gatgataatc gagtcgtcac
      301 gatattcccc tggtaccaat gttgtggagt ttacctatgg tggttcaagc gatattatga
      361 ttcagaagac agttgaaagg accggtggcg aggatgaagg aatgtcgatt ggtgcaacat
      421 tcctccttgg tgtgggttct ctagcgatcc tagctttact tggaggtgtc tttgttttct
      481 tcttcgttga atttgaggat gatgatgaag atgatcttct tgatgacggc tcctctacat
      541 cagaggcaga ggatgatcca tatgcgtggg ccaaggaaag gatggctgca gagggtgccg
      601 ccgcacctgt ccagcaggca acagcgcaac ctcagcctca ggctgcagtc cagcaacctg
      661 gaggctatcc cgggtggcgc tgggatcaga ctactcagca atgggtccca gatccatcca
      721 gtgttcagga tcaatgattt tacatcgtta gggtttgatg tttctcggaa atggaggaga
      781 tgttcatggc agtaataccg cgaccaggag ttcaggatcg aatcctcctt catcttcgtg
      841 atttctccga atactcagaa tcgattgagg ttcctttctc catttctcaa atgggtatcg
      901 ccaacgcagt gtcgattgcg aggagcaatg ttccaagagc gattgcaggc ttgaaggagg
      961 aagggattct aattgagaga caagcccata tttcaggggt ttcacgtaag cgtaaggcgt
     1021 acttcctaac tgacattggc ctcgaacatg ctgatagggt atacgaggaa tatgccgctt
     1081 ttgagtttga gatgattgca tcgggcggat ctaagacagt cacaatcgcg acctctcctg
     1141 accatttacc gttccctatg agggcagttg atatcatccg atacatcgat cattccggtg
     1201 ctctcgatgt ccgtgtgctc acaccagaga ttgtcgaacg ggacttatcg aagcacatcg
     1261 agaagcagtt agtgaattct ctttctgacc tccctcgcac gggccgattc tatggcagag
     1321 tgacagagat tgcgaatttc gtggcgattc ttgaacctca atctgcgaca cttctcgttc
     1381 caggtattgc agggattgga aagacctcca tggccagtcg cctcattgag gaatttactc
     1441 acaaaagaaa cctcctttac caccgatgtc aggagcgtga tggttcacga cctttcctcg
     1501 aggccatggg cgaatggtta ctccaaatag gtcatgcaga ccttgcagac tatctcgatg
     1561 caggtggtgt tgcgcaggtt gatgtcgcta cagagatgat tatcgatgga ctcagaaaga
     1621 ttccagcatt gattgttatc gatgacctcc acaaggttag cgatgagacc ttaattggga
     1681 ttattcggtc gatgacatta cgtctcggca gctgtgaaaa cgttggactt gtcttgttct
     1741 cacgttctta tcgaatggta gtccctcaga aggatgctga gggtaagatt cgaactttcg
     1801 ttactccctt ggatggactc aaccaggaag catgccggaa tcttctcgac cagattcctg
     1861 acttggatgc tactatgttt atccatctct acaatcttgc ccgaggccat cctatggttc
     1921 tcaagttgat caatcaggga ggagtggggg atactttcca tgagagtcta gagaacttcg
     1981 tggaagagga gatttttcgt cgcctcactg ggagcgaaaa gcggttgctt ggcgcactag
     2041 cagttttcag agacgcagtc ccaattgaag cgatttctgg gctcgatgtc aatatggatt
     2101 taatggatga tctcgttgag aaggggcttg cacggcagat cgattcggag actttcgatg
     2161 ttcatgatct gatacgtgaa ttcctcctcg tgtcgatgga gaatgagctc cgtcaggaac
     2221 tccatattaa cgctgcatct cattacagaa aagttcgcac gacccgctct gaacaccttg
     2281 agtttcttca tcaccttgcc gcttcaggtg agatcctcga atttgcagaa acactttctt
     2341 cggttggcaa tagtctagtg gctgctggcc atgttagcct cttgggtatc atcgattcta
     2401 tcgatacttc tgatctcgct gatgagtatc ttgtagatat ccttgagact aagggcgatt
     2461 tactaatcct tcagaatcgt tgggaggatg ctgaagcgtg tcacaatgag gctcttccga
     2521 ttgcgaagaa tctcaagcga gcagaccaag gtgctcgtct cctctccagt ctcgctgata
     2581 tcgaagttca tcatggtagg ttggaatctg ccttgaaact cctagaccag agtctcgctg
     2641 tttttatcga gacaagagat gcaatcgctg ccgctcgtac ctatctcaat atcggaagta
     2701 tccatcgtcg gagacgttct cacaaacagg cgttggatgc atatgagaac gtggagaaga
     2761 ttctcagtac gagttcaagt tctgagttag tggcatctcg aatcagattg gcatcagcat
     2821 tgctggacat gaatgagatc gatcgtgcac ggaagcatgc aatggatgcg catgatgaga
     2881 ccaaggaatc tgagcctcat ctccatgcta gagcgcgtat tgtgctaggt cggttgtatt
     2941 caaagacaga tgatctcgaa cttgcagttc accactatag tgaggctttg agcgctcttg
     3001 ccgaagagcc cgaccatcgt aattcggtcg agattaagat gctcattgga gaggtaatga
     3061 tggatactgg gcgacaggag gaggcgatgg agtactacct cgatgctctt gctgttgctg
     3121 aggcaaatga ccatcgtatg ctaattggtg agattcttgc tcgaatgggg agtagtgatc
     3181 cgaatcgtac caaccggatg gctcatcttc agcgtgccct agtcgtgttc agagaattgg
     3241 gtgctaatga tcggatgagg gatgtccaag catcggttca tcgtgcctta cttggttaga
     3301 atcccggctg ttccaatcct acagtgatgt tcccttgttg caaggaaatc cacactatgc
     3361 tcacgcctgc aagattggtt tcgccagaat gtgttgcatc tgaagcggcc gagatatctt
     3421 gggtgaacat cctagcttca gaggtgtcgg ttatggtcac ggattcctct gttaacagga
     3481 gaatcaaacc aagtcctgta tctgcagaga gtcgtagata caccggctct gcataggaag
     3541 catttgaatc aattctcatg gctgcatctg ctcgttcaat agcctctgca acctctcgaa
     3601 ggttttcttg aattgcttca ttggtccatc tttcctcggt tgcctgttga atgtcaaagg
     3661 tccatactga gaaggtagtt aggaacatca gccctaggaa gaaagtcagg atatagccaa
     3721 tctccgtggc tgctgcatcc tcatctcgtt gattgatggt catccgtcaa tcaccaccgc
     3781 gtcatgttca atcagggcca tctggagatt gaaggatact ggtccaccac ctgcgtggta
     3841 tatgctctcg gtggaagttg gtgtaggctg cacccagcca acatagtcat tcagtagatc
     3901 taaccggcca ggataggtta accagtcagt ggatgaatcg agatcgattg catcctgtga
     3961 agcgatggat gcgccgtatg gcccatccca tccacgtcgt acttcgtggg ctgaaatcga
     4021 tgcgagttga gatcttgtga gtagagtcag agtggtcttg tggtcggagg tgccggtatc
     4081 aagggatata tctgggatga caacaggtat ggttacagcg attcttggtc cgggcccttc
     4141 acgacttggg ggcacttcga ttgttgttgc aacatattca gggtggttgg tacctacaaa
     4201 cccaccgcgc catccaatct caagtcctga gacactggaa ctgaaggtgt aatccatccg
     4261 aggtaagggg atagaccagc ccaatcctac agcagcatga gggtcatctg catgagggcc
     4321 tctcatcgta gccaatagtc cgacaggatg ttctccagca atccatgcat caattacgcc
     4381 tccatcagag aggaaggata catcggccca tgggaggtga ttctgagtcc atccacttat
     4441 gcggtcatcg atttcaacac atctgtcctc gcccattgat cggaggtcaa tcagtccaga
     4501 atcaccgtgc gagatgtagg ctcgaaccgg gctttctcct tggtcgaatg gtctttcagc
     4561 agtcatttcg attctgccac cttcagccga tatccattca attgacatcc ttggtgagct
     4621 ctcattgatg acagtcgtgc ttgcaaagga tggcgcgata ttatcgagat gttctaagtt
     4681 gacatcatgt ccaagacgct gtatcatgag ttcacttcca tgaggtgatc cacctacgat
     4741 gttggaccat gtgctggcac tagtacgtcc ggttgaggtg gaatgtaggt agtctaggct
     4801 cgcagtccta gatgcctcag ttccatcggc cacaatgtgt gcctgaactg ggcttcctga
     4861 aacaatccat ccaccttggc cacttaccat ggcgatacgg gcagtgtcgc gtgctccaac
     4921 gctatggtac aaaccattga tttcaacaga ggttgagaga agaccaggat tgtgaatcaa
     4981 taattcatta ctgctcgctg gaaagaggaa agttgtacct gacgtactcc ccgtttgatc
     5041 cagaagcgca gtcgacccac ttgtcgattc cccttgcttc acaatcatat gcgcagaggt
     5101 cgatgtagtt acttcgatag ccattgattc agcaagggta atcgttgtct ccaccattgc
     5161 gatacggcct tgactgccgt ccggttctac tgtactctgt actactgaat ccaacgattg
     5221 aatggtgtct ccagcatggg ttacagcagt aaatgtctca gtagaataga ggagaatagt
     5281 cgtatttcct gtcattgcag gaatagtcca acttcgcccc atacctgtcg gttcagggga
     5341 atcgggggcg aaggtagcca ttcctccgtc accttggaag aaaatagccc gcattggcat
     5401 cgaggagata gccatcgcgg gggagtcctg attggaatca atctcaatga cattacccgc
     5461 tcgtattcga tgtgtatcta ctccatcatt gacagtaacg cgttccaatg aagtctgtaa
     5521 ggatgccact ggcgtcacca acattttccc attggcctgt ggtgatatgt gtcggtgttc
     5581 agcatcaatg tgcgctcgga ggtctgttag acacattgag gtgaggtctc caccgggata
     5641 tcggtgttca atcacagaat ccaaatcgtt catgctattg aggcgtaagg tttgatcctc
     5701 aaccagcgtt gcagtatacc atgttcctcc tctacgtaga ttccaactga catcccctgt
     5761 atgtggctga atcatcatct cagatcgatc tccagggagg cctgcttccg agagtcggac
     5821 agtttcttga gcgagatctg taaactgtcc ttccatggtt tcacggtcaa cggctccctg
     5881 aagttcggcc atcgttggga caatcatcgc catcattcca gatatgatgc tgaggacgat
     5941 ggcgaagagg agaacggtag cgactgccgc agttacagca tcctcgttct cctgcctcag
     6001 gtcgcgcctc atggaatcac ct
//
LOCUS       DUKB01000115            4827 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_170986, whole genome shotgun sequence.
ACCESSION   DUKB01000115 DUKB01000000
VERSION     DUKB01000115.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4827)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4827)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4827
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_170986"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1426)
                     /locus_tag="HA345_03995"
     CDS             complement(<1..1426)
                     /locus_tag="HA345_03995"
                     /inference="COORDINATES: protein motif:HMM:NF013319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HIH84552.1"
                     /translation="MDEPEWRNHAIREDDVTIRIKKHGQMLTDARMIADEAQWNDLSD
                     DRSPQQVVNTASMPGIVGDAWAMADWHYGYGFPIGGVVATDIEAGELGGSISPGGVGF
                     DINCGVRLLSIDLPKPEGTDLKEMARRLFNAVPAGASSKGGWDLKKHQMDQILSRGAE
                     AAVDLGLGNDNDLEAIESNGLLESEERNVSERAIERGMKALGTLGSGNHFLEVQVVDK
                     IVDQKAAKAFGLIEGGLTAMIHTGSRGLGHQVCSEHVEAIESKYQKDGDTWHAESWGH
                     RLPDRQLAAAPIHSKEGEAYLDAMHAAGNYAFANRSALTERLRRTMRKFSGGDTEVNL
                     IYDVSHNIAKIEDHKVHGVSCRCCVHRKGATRALGGDHPELASRFSGVGQPVLVPGDM
                     GTASWVLAGPKSGSNQAFASSCHGAGRRLSRKAARETINGEQLITDLQSKGIEVRART
                     PRVIAEEAPNAYKDVDDVIRLTSQA"
     gene            1544..4402
                     /gene="alaS"
                     /locus_tag="HA345_04000"
     CDS             1544..4402
                     /gene="alaS"
                     /locus_tag="HA345_04000"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: protein motif:HMM:NF010477.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HIH84553.1"
                     /translation="MAFGDIDAPYFHENGFVRTCCRVSGLWFWTRDQNRTTSGDTDED
                     EYTFIGAPIIKGFDQRGKALKDTMRETFLEFFEKRSHSRVSPYPVIARWRDDIHLTIA
                     SIADFQPHVTSGEVPPPANPLTISQPCIRLTDVAAVGRSGRHLTTFEMMAHHCFNRPQ
                     DGDIHYWINETIRFCDVLFTEDLGIDPMEISYVENPWSGGGNAGPAVEVIVGGLELAT
                     LVFMNLKEDETGDVEIKGVRYSEMPLQIIDTGYGLERFCWAAAGTPTIYEAIYPETVS
                     WLRELSSFDKRLSTLGDVDVDLLLAELSRLAGILNIDVGTDVDALYVRLIERLSERNV
                     SLDVATLKSITEPLSSIYAIPDHMHALCNMLNDGLVPSNAKAGYLARMMARRACRMKD
                     DLGLTIGLDEIGAHHIDVNLSGSIEPKSRQNILTILALEELRYREMLRAGQAAVRTAF
                     KDIPSDANKVPSEILFRLAEERGLQPEMVVSIAYEAGWPNVTVPVGFAADMAARHAEQ
                     VRMLAKRKGGDGTGLGAGHPATIRSFYDDTAAVQFDAKVLSCIEGIDAISTGSESLGN
                     ATHAIVLDRTLFYPEGGGQLSDHGVLSDGSASVRVVDVQIDDDVILHLTDGPLATGSV
                     QGEIDWSRRKQLMDHHTAVHIVGGAARQILGDHIWQAGSNKGARYARLDITHHSRLER
                     EVLDAIEDLANEVVASSPTVEKLLIPRAEADANFGFELYQGGPPKHSEIRVIRIGEFD
                     VQACGGTHHDDAGMVDYVRVIRSNLVQDGVERLHILAGSAAREHAKQQEDLLSRSADV
                     LGVQADDLPATVGRFFNEWKEQRKRIEALEAEIVILRTSGSDGGTTEVDGVRIVVMEV
                     DGGMKQMQAMVKELTLDPSNPTIAVLGSRDGGGKLLAAVTEGTEATNRVDAGSLIREI
                     SPHISGGGGGRPTFAQAGGSNPNGLDAALDAARTLLGL"
     gene            complement(4404..4796)
                     /locus_tag="HA345_04005"
     CDS             complement(4404..4796)
                     /locus_tag="HA345_04005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84554.1"
                     /translation="MNKNGTWFEYVATGIGVTNGICLMLLVHLPFTVYPLPHHILAVI
                     IFSSGLGWILAAHWIIGEDDDTGLVFSFPARDVRRWSLILGIGSGILIGIPFLMMYLE
                     LAAILEWGILVGLQGGLLSMEGLLDNSD"
BASE COUNT         1147 a         1146 c         1219 g         1315 t
ORIGIN      
        1 ctgcttgaga agtgaggcga atcacgtcgt ctacatcttt gtacgcatta ggtgcctctt
       61 ccgcgatgac ccgcggtgtc cgtgctcgaa cttcaatccc tttcgattgg agatctgtga
      121 taagttgctc tccgttgatt gtttcacgag ctgcttttct agatagtcgg cgccctgctc
      181 cgtggcagga tgaagcgaag gcttgattcg aaccagactt gggcccagcg agaacccaag
      241 aggcagttcc catgtcccca ggtacgagaa cgggttgacc tacaccggag aatcgagaag
      301 caagttcggg atggtctcct cctagtgccc gagttgctcc ttttcggtgc acacagcatc
      361 tacaagatac gccatggacc ttgtggtcct cgatttttgc gatattgtga cttacgtcgt
      421 agatcagatt cacttcggta tcgccaccgg aaaatttccg catggtgcgg cggagccttt
      481 cagtaagcgc tgatcgattt gcaaaggcgt agtttcctgc tgcatgcatc gcatcgagat
      541 aggcctcccc ctctttgcta tgaatcgggg cggcagctag ttggcggtca gggagtcgat
      601 ggccccaaga ttctgcatgc catgtatctc catccttttg atacttagac tcgattgcct
      661 cgacatgttc gctacaaact tggtgtccga gacctctaga ccccgtatgg atcattgctg
      721 tgagacctcc ttcaatgagt ccgaaggcct ttgcagcctt ctgatcgacg attttgtcta
      781 ctacttgtac ctcaaggaag tggttcccac tacccaacgt tccgagtgct ttcatccccc
      841 tctcaattgc tctctctgat acattcctct cttcggattc gagcaaccca ttactctcaa
      901 ttgcttcgag gtcattgtca ttcccaaggc caagatcaac ggccgcttct gcacctctgg
      961 ataggatctg atccatctga tgtttcttga ggtcccaccc ccctttcgag gaagcgcctg
     1021 ctggcactgc gttgaacagc cgtcttgcca tttctttgag atcggttccc tcgggtttcg
     1081 gtaaatcaat ggatagaagg cgtactccac agttgatgtc aaatccgacg cctcctggag
     1141 aaatgcttcc acctaattct cctgcttcga tgtccgttgc aacaacgccg ccaatgggga
     1201 atccatatcc gtagtgccaa tctgccatgg cccaagcatc acctactata cccggcatac
     1261 ttgctgtatt gacgacctgt tggggggatc gatcgtcact taggtcattc cactgggcct
     1321 catccgcaat catgcgggca tcagtcagca tctgtccatg cttcttgatt cgaatagtaa
     1381 catcatcttc ccgaatcgca tgattgcgcc attcgggctc atccatgttc tgtcgctacg
     1441 gttccgcttc aagtcggttg cggaaggttt gctcacttaa tggtcggatt tcgggtggcc
     1501 ttgaagtgct tcggtcgggt ccaagggata tcgaggcgag gtcatggcgt tcggagatat
     1561 cgatgcccca tacttccacg agaatggatt cgttcgaact tgctgtcgag tatcgggact
     1621 ttggttctgg acaagagacc agaataggac gacttccggt gatacggatg aagatgaata
     1681 cactttcatt ggtgcaccga ttatcaaggg atttgatcaa aggggtaagg cgttgaagga
     1741 tacgatgcgc gagacatttc tagaattctt tgagaaaagg tctcattcac gagtatcacc
     1801 ctatcccgta atagctagat ggcgtgacga tattcatctt acaatcgcca gtattgcaga
     1861 tttccaacct catgttactt ccggagaagt gcctcctccc gccaatccat tgactatctc
     1921 tcagccctgt attcgcctaa ctgatgtggc cgcagtagga cgttctgggc gtcatcttac
     1981 aactttcgag atgatggctc atcactgctt caatcgtcca caggatggtg atattcacta
     2041 ctggataaac gagacaatcc gtttctgtga tgtgctcttt acagaggatc tcggaatcga
     2101 tcccatggag attagttatg ttgagaatcc gtggtcaggt ggagggaatg ccggtccggc
     2161 tgtggaagtc atcgtaggtg gtcttgaact agctactctt gttttcatga atctcaaaga
     2221 agacgagacc ggtgatgttg aaattaaggg tgttcgatat agtgagatgc cattgcagat
     2281 catagatacg ggttatggat tagagcgttt ttgttgggct gctgctggca ctcctacgat
     2341 ttacgaggct atctatccag agaccgtttc atggcttcgt gaactttcat cttttgataa
     2401 acgcttgagt acacttggcg atgtagatgt ggatttactg ttagcggaac ttagtcgtct
     2461 tgcagggatt ttgaatattg atgttggaac agatgtagat gcgttgtacg tccgattaat
     2521 tgaacgcctt tcggaacgaa atgtctctct tgatgtggct acgctgaaat caatcacaga
     2581 gccactctct tccatctatg ctatccctga tcatatgcat gctttgtgta acatgctcaa
     2641 tgatggccta gttccatcca atgcaaaggc cggatatctc gctaggatga tggcacgtcg
     2701 cgcatgccgt atgaaggacg atcttggact cacaattggt ctcgatgaaa ttggtgctca
     2761 tcacatcgat gtcaatttgt ccggttcgat tgaacctaaa tcacgtcaga atatcctaac
     2821 gattcttgct ttagaggaat tacgatatcg tgagatgctt agagcaggac aagctgctgt
     2881 aagaacggcg ttcaaggata ttccttcaga tgctaacaag gtcccctctg agattttgtt
     2941 tcggctcgct gaggagcgtg gtttgcaacc agagatggtt gtaagtattg catacgaggc
     3001 aggttggccg aatgtaaccg tccctgtcgg ttttgctgcg gatatggctg ctcgtcatgc
     3061 agagcaagtc aggatgcttg caaagcgcaa gggtggtgat ggaaccgggc ttggagcggg
     3121 ccatcctgct actatacgtt cattctatga tgacactgca gcagtccaat ttgatgcgaa
     3181 ggtactctct tgcattgaag gaattgatgc tatttcaaca ggctctgaat ctcttggcaa
     3241 tgcgacgcat gctatagttc tcgatcgtac cttgttttac cctgagggcg gggggcaact
     3301 ttcagatcat ggtgttcttt cagatgggtc ggcctcagta cgagttgttg atgtccaaat
     3361 cgatgatgat gtaatcttac atctgacaga tggacctctg gcgactggtt cggttcaggg
     3421 tgaaattgac tggtctcgaa ggaagcaact tatggatcac cacactgctg ttcacattgt
     3481 aggaggtgcc gctcgtcaga ttttaggaga ccatatttgg caagccgggt caaacaaagg
     3541 tgctagatac gcacgtcttg acatcaccca tcacagtcgt cttgagcgcg aggtactaga
     3601 tgcaatcgag gacttggcaa acgaagtcgt tgcttcaagt ccgactgtgg agaagctact
     3661 aattcctcgc gctgaagctg atgcaaactt tggtttcgaa ctctatcagg gcggaccccc
     3721 aaagcattct gaaattcgtg tgattcgtat tggtgaattc gatgttcagg catgtggagg
     3781 tactcaccac gatgatgcag gcatggtgga ttacgtccgt gtcatccgtt cgaatcttgt
     3841 gcaagatgga gtagaacgac tccacattct tgcaggttcg gcagcacgag aacatgcaaa
     3901 gcaacaggag gatctactgt cgcgtagtgc tgatgttctt ggtgttcaag cggatgatct
     3961 cccggctaca gtagggcgtt tcttcaatga atggaaagag cagcggaaga gaatcgaagc
     4021 tctagaagca gagattgtca tacttcgtac ctcaggtagt gatggcggaa ccacagaggt
     4081 agatggggtt agaattgttg taatggaagt cgatggtggt atgaagcaga tgcaagctat
     4141 ggtcaaggag ctcaccttag acccttcaaa tccaactatt gcagtcctag gcagtcgaga
     4201 tggaggagga aaattacttg ctgcagtcac cgagggaaca gaagcgacta acagggttga
     4261 tgctggttcg ctaattcgtg agatttcccc gcatatatcg ggtggtggcg ggggtcgtcc
     4321 aacattcgct caagccggtg gatcaaatcc caatggtctc gatgcggccc ttgatgccgc
     4381 tcgaactctt cttggattgt aattcaatct gagttgtcaa gtaatccttc catcgatagc
     4441 aggccacctt gtagacccac aagtatcccc cattcaagga ttgcagctaa ttcaagatac
     4501 atcatcaaaa agggaatgcc aatcaagatg ccagatccga taccaagtat caaactccag
     4561 cgtcgtacat ctcttgcagg gaaactaaac acaagtccgg tgtcatcatc ttcgcctatt
     4621 atccagtgag cagcgagaat ccaaccaagg ccactggaaa atatgatcac agcaaggata
     4681 tgatggggga gtggatacac tgtgaacggt agatgaacaa gtagcataag gcagatgcca
     4741 tttgtaacgc ctatgcctgt tgcgacatat tcaaaccaag ttccattctt attcaatggc
     4801 ccccctcttc ttcccattct gatgacc
//
LOCUS       DUKB01000116            3644 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_274825, whole genome shotgun sequence.
ACCESSION   DUKB01000116 DUKB01000000
VERSION     DUKB01000116.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3644)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3644)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3644
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_274825"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="HA345_04010"
     CDS             complement(<1..685)
                     /locus_tag="HA345_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84555.1"
                     /translation="MDTHDRDALIQHILMSEAETQARLHNGINPHEIRQSLGPFTSKD
                     AGGPERVKDAIDAYLRSAVRTDLPEFMRAFWGASQPASVIGSLLADIRNTTMHSFAVS
                     PAATIIEREMIRGIADRIGINANGIFTTGGSNSNEIGLLCARENLIPGSHRTGIQGHR
                     LCVLTSDEAHYSVDSATNRMGIGMDSIIRVPTKYGVMQPSDLIKAIQHVKEEGMEPLA
                     IVSTAGSTVR"
     gene            808..1461
                     /locus_tag="HA345_04015"
     CDS             808..1461
                     /locus_tag="HA345_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84556.1"
                     /translation="MTGPVRFRYRNQEEDIDILIQGDANWVEKIRDELGISGNGPGFL
                     SPVFGSAGPRPSSRSSKGASKRSNEDQESISIRPGPEPDPSKIPASIREIGALDIHRD
                     FEGMSMASAPDLDFDEIQGEIDAMGPFEPLEDAGTERALEEKVLQAFMGFLVQVHGMT
                     AIPETMLYAHLGNRFSMGVEEFGKWLRRLWRVGRLERMFGSDGSDSYVPFPYWLERE"
     gene            1555..>3644
                     /locus_tag="HA345_04020"
     CDS             1555..>3644
                     /locus_tag="HA345_04020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84557.1"
                     /translation="MMSLANATNDSNRRRRLSFFLTSLMLTSLLIGLAPTAIASHEKT
                     YHTTKNPTTIAAGDLDCDGDNDLVTGSEMGNFLTILYNENGDFSDRQDIWTNNNNSRR
                     AGFTDIADSSEVDIGDIDDDGNPDIVYFQGNIRTVSGATVMGNITVLYGDCAGGWTAS
                     NPITVSPNAIGIEVADVDGDGNDDIVGLFIDVTVVNMQLAIFRGPDPTQVNNQATTTM
                     PLGGTSGAYYYDFTLGSYGETVAGGGLGGGLGDCDDIDAWLMTSPPYNGPQSGFDPGN
                     WDNVTIIEYDCTTNQFYNPNTAPNNVHKFAMGTDNDGQIDVADSDSDGVIDMVAMTDG
                     WNQNVTYATGGGTTWATGNLAYIGDFVGSDVSLEDINQDGHMDLVVPSMLTVTTVTST
                     ALGNSTILSTDNLQDQNTVQIILSDGAGGWENPQSFDVGRRPTMAIVSQLTGGSGSAL
                     DIAVGQRDYTFSFVDGSLWIDSKGWAGSVDSITIVQLDNQDLGVTGLSVSPAAYNPFT
                     QSGQIGAGTRDVNVTVRNTGLETVSGSADVEVKVRDILSGTDTIVYANDFDGNVDSSN
                     CSGCNLDATSYSGEWGSGSSWHVEQASNTSNKADTRFEAHDNPTGFMWAGLRAANSSD
                     GGSLETGYYNNMDEAFIVENIDLRNSDTAAMDIDMLCAVGYSMVYYSSTGIANRVLYD
                     DSCTIDVWSEADGWA"
BASE COUNT          869 a          835 c          958 g          982 t
ORIGIN      
        1 cccgtacggt gctgcccgca gtcgaaacga tggccaatgg ttccatgcct tcttctttca
       61 catgttgaat cgctttgatg aggtcagaag gttgcatgac tccatacttt gttgggacgc
      121 gtatgatgga atccatgcca attcccatcc tgttcgtagc cgaatccacg gagtaatgcg
      181 cttcatctga agtcagcaca cacagcctat ggccctgaat gcctgttcta tgggatccgg
      241 gaatcaggtt ctcacgagca cataagaggc cgatttcatt actgtttgaa ccacccgtag
      301 taaatatccc attagcattg atgcctattc gatctgctat tcctcgaatc atctctcgtt
      361 cgatgatagt tgcagcaggc gatactgcga aggaatgcat agttgtgttt cgtatatctg
      421 ccagaaggga tccgattaca gatgcgggtt gtgacgctcc ccagaaggcc cgcatgaatt
      481 cgggcagatc agttctcact gcagatcgta agtaggcgtc gattgcatcc ttcacacgtt
      541 ccgggccacc tgcgtctttg cttgtgaagg ggccgagtga ttggcgtatc tcatgcgggt
      601 taatcccgtt gtggagtcgt gcttgcgttt ctgcttccga cataaggatg tgctggatga
      661 gcgcatccct atcgtgtgtg tccatgggct ggcgagccag cctcaggttt tgattctgtg
      721 tggcgtgact attctctaat ccgtagacag tgcagttact gttcgattgg ttgaaggacc
      781 gggattcaag cagtgagttc catggccatg accggtcccg ttcgattcag gtatcggaat
      841 caggaggagg acatcgatat tctcatccaa ggggatgcga attgggtcga aaaaatccgt
      901 gacgaactcg gaatctcggg taacggtcca ggattcctat ctcctgtgtt cggatctgcc
      961 ggtcctcgcc cctctagtcg ttcttccaaa ggggcctcaa aaaggtcgaa tgaagatcaa
     1021 gaatcgattt caatccgtcc tggtccggag cctgatccga gtaagattcc agcttcaata
     1081 cgggaaatcg gggctttgga cattcatcgt gattttgagg ggatgagtat ggcatctgca
     1141 ccagatcttg atttcgatga gatacagggt gaaattgacg ccatgggccc ctttgaacct
     1201 cttgaggatg cgggtacaga gcgtgctctt gaagagaaag tcctccaagc cttcatgggt
     1261 ttcttagtgc aggttcatgg tatgactgcg attccagaaa ctatgctcta tgctcatctt
     1321 ggaaatcgat tctccatggg ggtggaggag ttcggtaaat ggttgcgacg tctatggcgt
     1381 gttggcagat tagaacgcat gttcggttcg gatggttctg attcttatgt cccctttcca
     1441 tattggcttg agcgagaata aacctcgaaa tgacactccc gctacgcttt agggaaacat
     1501 ggttcagagc acgaccccat aaccctcaat aagagtcggt taactcagac gttcatgatg
     1561 tccctagcga atgccacgaa tgattccaac aggaggcgac gactctcttt cttccttacg
     1621 agtttgatgt tgacctctct tctcatcgga ttggcgccaa ctgctatcgc gtctcacgaa
     1681 aagacatacc atacaacgaa gaatccgaca acaattgctg caggtgatct tgattgtgat
     1741 ggcgacaatg atctcgtcac tggttcggaa atgggcaact tccttacaat cctatacaac
     1801 gaaaatgggg acttttcgga tcggcaggat atttggacaa ataacaacaa ttctcgtcgt
     1861 gcaggattta ccgacattgc agattccagt gaagtggata taggagacat agatgatgat
     1921 gggaaccctg acatcgttta cttccaaggg aatatccgga ctgttagtgg agctaccgtt
     1981 atgggtaaca tcacggtcct atacggcgat tgcgcaggtg ggtggactgc atctaatcca
     2041 attactgtat ctcctaatgc aatcggaatt gaggttgcag atgtcgatgg ggacggaaat
     2101 gacgacattg ttggattgtt catcgatgtt accgtcgtga atatgcagtt agcgattttc
     2161 cgtggccctg acccaaccca ggtcaacaat caggccacaa ccacaatgcc gcttggtggc
     2221 acatcgggcg cttactacta tgatttcact ttgggatctt atggtgagac tgttgcaggt
     2281 ggaggtctcg gaggaggtct cggcgactgc gacgatatcg atgcttggct catgacctct
     2341 cctccttaca acggccctca gtccggtttc gatccaggga attgggacaa cgtgacgatt
     2401 atcgaatacg attgcacaac aaatcagttt tacaatccga acacggctcc aaacaatgtt
     2461 cacaagttcg caatgggtac cgacaatgac ggtcaaatcg atgttgcgga tagtgatagt
     2521 gacggagtca ttgacatggt tgctatgact gatggttgga atcagaacgt cacctacgcc
     2581 actggtggtg ggactacctg ggctacgggc aatcttgcct acattggtga ttttgtaggt
     2641 tcggatgtaa gcctcgaaga catcaatcaa gacggtcata tggatttggt tgtgccaagt
     2701 atgctgactg tcacgacagt tacctccacc gcattgggta acagcacaat tctctcaaca
     2761 gacaatctgc aagaccagaa tactgttcag attattcttt cagatggcgc aggagggtgg
     2821 gagaatcctc agtccttcga tgtcggacgt cgtccaacga tggcgattgt gtcgcagtta
     2881 accggtggtt caggcagtgc tctcgacatc gcagttggtc agcgtgatta tacattcagt
     2941 ttcgttgatg gttccctatg gattgattcc aaggggtggg ctgggagtgt ggactctatt
     3001 acaatcgtac aactcgataa ccaagatctt ggtgtgactg gtctttcagt ttcgccagca
     3061 gcatacaatc cattcactca gagcggtcaa attggggctg gaacccgaga tgtgaatgtc
     3121 acagttcgta atactggtct tgaaacggtc agtggttcag ctgatgtcga ggtaaaggtt
     3181 cgtgatattc tctctggaac tgacacaatt gtctatgcca acgacttcga tggaaatgta
     3241 gattcgtcta actgttcagg atgtaatctg gatgcgactt cctattctgg tgagtggggc
     3301 tctggaagtt cttggcatgt tgagcaggca tccaatactt cgaacaaggc ggatacgcgg
     3361 tttgaggctc acgacaaccc tactggcttc atgtgggcag gtctccgtgc agcaaactct
     3421 tccgatggtg gctccttaga gacaggttac tacaacaaca tggatgaggc gttcatagtc
     3481 gagaacatcg atcttaggaa ctcggatact gctgctatgg acatcgacat gctatgtgca
     3541 gttggttact cgatggtcta ctacagcagt accggtattg ctaaccgtgt actctacgat
     3601 gattcctgca caatcgatgt atggtccgag gcagatgggt gggc
//
LOCUS       DUKB01000117            4031 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_95470, whole genome shotgun sequence.
ACCESSION   DUKB01000117 DUKB01000000
VERSION     DUKB01000117.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4031)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4031)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_95470"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1339
                     /gene="aspS"
                     /locus_tag="HA345_04025"
     CDS             <1..1339
                     /gene="aspS"
                     /locus_tag="HA345_04025"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF003483.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HIH84558.1"
                     /translation="LVGDTVTIAGHAEAVRGRGGVCFLMLRDGTGYLQAFLKKDGMDE
                     EIFLAVQSLSRESTVQITGEVAQKRPPKVPEGSPAPPPEYEVVASSAQIMSAAQTPLP
                     LGVTDKVHVELDTRLDNRHLDLRRNHINAMFQLRSKVLAYGREHLLKEGFQEMNSPKI
                     IASASEGGTNLFPMTYFETPAFLSQSPQLYKQLAILGGLERVFEIGPAFRAEEHDTYR
                     HLNEFISFDIEMAWADDEDVMGVQERMIHHIWSSVAEKDGNLIDIINEWREVQEPPLD
                     PISVDVPSTPFPRVSYDKAIEIIQSKGGEITWGDDISASDADLIAEEYAGFHFIPRWP
                     MEMKPFYIYHDETEKGTTGEQLSRGFDLNYGRDEMTSGGQREHRVDVLELNLIDMGLD
                     PTDFTFYTDGFRFGAPPHAGWGLGVARLLMVLTGAGNVREVVLFPRDRSRVTP"
     gene            1409..1481
                     /locus_tag="HA345_04030"
     tRNA            1409..1481
                     /locus_tag="HA345_04030"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1442..1444,aa:Val,seq:tac)
     gene            1546..2283
                     /locus_tag="HA345_04035"
     CDS             1546..2283
                     /locus_tag="HA345_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009454788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HIH84559.1"
                     /translation="MGDRNATLASRLARKLKLLGWTVTTAESCTGGMLTSALTDISGA
                     STWFRQGWVTYSNEAKMKELSVAPENFKGDTVPGAVSFPVAFGMAQGAVQRSGADIGI
                     SITGIAGPGGGTDTKPVGLAFVCAYNRQADAFLVRSTKNQEGDRSTNKQLFVSLALET
                     ALNLIEGLESGHLSMDVRKDTGDDEESDSEKTIPLDAGALAAFGRVPGMEDAWFGEVR
                     WSDEQESGVTVVEELRRKEPEDIWSEE"
     gene            2327..>3449
                     /locus_tag="HA345_04040"
     CDS             2327..>3449
                     /locus_tag="HA345_04040"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84560.1"
                     /translation="MSEETWEAKYESLCHARLPPAPSARERLESLESIVPILSAAMTA
                     NIRGLLTADVLDQLIEIAGIDEGSKNIAEVAPVLDSSAGARTVAPVDEPQIKPAARPH
                     GLPHFDLSHFPMEAKDVDMELEVHFDITGNSVTEGRMSDILSCFNDRFATISRMLIES
                     RTLPNRPTKIGEVINNKTRYREDECTILGIVGTPEHTKNGHLRFLLEDEGTEIQCLLK
                     NRFEDDPNLPINAGLMPDDVIGVTGRLADQQRGRKDLFFVEDIHLPTFRRHDKASAPA
                     DQAISVAFLSDVHLGSKTFLSAQWDKMIHWFNTDPLAKTIRYFVLSGDGVDGVGIYPN
                     QEKELAIPDLFNQYSGLAELLEPLPDWVDVILLPGNHDAV"
     assembly_gap    3450..3759
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3760..>4031
                     /locus_tag="HA345_04045"
     CDS             <3760..>4031
                     /locus_tag="HA345_04045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase II small subunit"
                     /protein_id="HIH84561.1"
                     /translation="PGNHDAVRPAEPQPALDPELQQHYNNTTFVGNPCDFSLHGVRIL
                     SYHGKSIDDFVAKMRSVSYDRPEAAMRAMIDRRHLAPAWGGKTPLS"
BASE COUNT          984 a          951 c          960 g          826 t
ORIGIN      
        1 tctagtgggc gatactgtca ctattgcagg ccatgccgaa gctgtgcgtg gtcgcggggg
       61 ggtttgtttc ctaatgcttc gagacgggac tggatatttg caggccttcc tgaagaaaga
      121 tgggatggat gaggagatat ttctcgcggt gcaaagcctc tctcgagaat ctacggtaca
      181 aatcactggt gaagtcgctc aaaaacgacc gccaaaggtc ccagaaggat cccctgctcc
      241 accgcccgag tatgaagtcg tagcgagtag cgcacagatt atgtccgcgg cacagacacc
      301 tctaccgctc ggtgttacag acaaggtaca cgtagaactg gacacgcgcc tagataaccg
      361 ccatctcgat ctccgccgca accacatcaa tgcgatgttc caactacgca gtaaggtcct
      421 agcatacggc cgggaacacc tcctcaagga aggattccaa gaaatgaact ccccgaagat
      481 tatcgcaagt gcctcagaag gtggtacaaa tctcttccca atgacctact tcgaaacacc
      541 tgctttcctg tcccaaagcc ctcaactgta caagcagttg gcaatcctcg gcggtctaga
      601 acgcgtattc gagattgggc ccgcattccg tgccgaagag cacgatacct accgtcacct
      661 gaacgaattc atttcgttcg acatagaaat ggcctgggcg gatgacgaag acgtcatggg
      721 cgtccaggaa cgtatgattc atcatatctg gtcatccgtt gccgagaagg atggaaacct
      781 gattgatatt atcaacgaat ggcgcgaagt acaggaacct ccgctcgacc caatcagcgt
      841 tgatgtacct agtaccccct tcccacgagt ttcgtatgac aaagcgattg aaatcatcca
      901 atccaaaggt ggcgaaatca catggggcga tgatatcagc gcttcagatg cggacttgat
      961 tgcagaggag tatgccggat tccactttat cccacgatgg cctatggaaa tgaagccatt
     1021 ctacatctat catgatgaaa ccgagaaagg tacaactggt gagcaactaa gtcgtggttt
     1081 tgatctcaac tatgggcgag atgaaatgac atcgggcgga caacgtgagc atcgcgtaga
     1141 cgtcctagaa ctgaatctca tcgacatggg gcttgacccc acagacttca cattctacac
     1201 cgacgggttc cgtttcggag ccccgcccca cgcgggatgg ggactcggcg ttgcccgtct
     1261 tctaatggtt ctaacaggag ctggtaacgt tcgagaagtc gtactattcc ctcgtgaccg
     1321 atctagagtc acaccctgaa gattctgaag ggcataattg cccaaattga ccgacgcatt
     1381 gaatcgaggg aggccttcag agaggttggg gcccgtggtc taggggttat gacgtcgctc
     1441 ttacaaagcg aagatcaccg gttcaattcc ggtcgggccc actccaaata tcgtcaatca
     1501 tagcatgggt catcctcaaa aataggtggc gacccgaatg tattgatggg cgatcgcaat
     1561 gcgaccctag cctcgcggct tgcaaggaag ctcaaactcc ttggatggac tgtgacaaca
     1621 gcagagtcgt gcacaggtgg tatgctcaca agcgctctca ccgatatcag tggagcaagt
     1681 acctggttcc gtcaaggatg ggtcacctac tcgaacgagg cgaagatgaa ggaactcagt
     1741 gttgcacctg agaacttcaa gggagatact gtcccaggag ctgtatcttt tccagtagcc
     1801 ttcggaatgg cacaaggcgc cgtacaacgt tcaggcgcag atatcgggat atcgattact
     1861 ggaattgcgg gaccgggagg ggggacggat acgaagcctg tcggcctcgc ttttgtctgt
     1921 gcttacaacc gtcaggccga tgcattcctc gtccgtagta caaaaaatca ggaaggggat
     1981 cgctccacga acaagcaatt gtttgtgtcc ttggctctgg agactgcact aaatctgatt
     2041 gaaggacttg aatccggcca tctctcgatg gacgttcgca aggatacggg agacgatgaa
     2101 gaatctgatt ccgagaagac aattccgtta gatgcaggag ctctagcagc attcggacgc
     2161 gtcccaggaa tggaggatgc gtggttcgga gaagtacgat ggtctgatga gcaagaaagc
     2221 ggagttaccg tggtcgagga actcaggcga aaggagccag aggacatctg gtctgaggaa
     2281 tgagggccgc aatcctcttt gagtgtcgcc aagcccctga aattccatgt cggaggaaac
     2341 ttgggaggca aagtacgaga gcctctgcca tgctaggctc cctcctgcgc caagtgcccg
     2401 tgagcgactt gaatcccttg aatcgattgt accgattcta agtgccgcga tgaccgcgaa
     2461 tatacgtggc ctgttgactg cagatgtgtt ggatcaactc atcgagattg caggtatcga
     2521 tgaaggatcc aagaatatag ctgaagtcgc ccctgtgctt gactcttcag caggtgccag
     2581 aactgtcgca cccgttgatg aaccacagat taagcccgct gcaaggcccc atggcctacc
     2641 tcatttcgac ctcagccact tcccgatgga agcaaaagac gtagatatgg aactggaggt
     2701 tcacttcgat atcactggca atagcgtaac agaaggtaga atgtcagata tcctgtcctg
     2761 cttcaatgac cgattcgcca caatcagtcg aatgttaatc gaatcgagaa ctctcccaaa
     2821 caggcctaca aaaatcggag aggtcatcaa caacaaaaca cgatacagag aggatgaatg
     2881 cacgattcta gggatcgtag gaaccccaga gcacaccaaa aacggacatc taagattcct
     2941 tttggaggat gaaggtactg aaatccaatg tcttctcaaa aataggttcg aagatgatcc
     3001 taatctaccg attaatgctg ggttgatgcc agacgatgta atcggagtca caggaaggct
     3061 agcagatcaa caacgtggta ggaaagacct attcttcgta gaagacatcc atctgccaac
     3121 cttccgtcgt cacgataagg ccagtgcacc tgccgaccaa gcaatctccg ttgccttcct
     3181 atcagatgta catctggggt ccaagacatt cctaagtgca cagtgggata agatgattca
     3241 ctggttcaac actgacccat tggcgaagac aatccgctat ttcgtgctca gtggtgacgg
     3301 cgttgatggc gtcggcatct atcctaatca ggaaaaggag ttggccatcc cagacctatt
     3361 caaccaatac agtggactcg ctgaactcct tgagccatta cccgactggg tagatgttat
     3421 cctactacct ggtaatcatg atgcggttcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna cctggtaatc atgatgcggt
     3781 tcgccctgct gagcctcagc ctgcacttga tcctgaactt caacagcatt acaacaacac
     3841 aaccttcgtt ggtaatccgt gtgacttcag cctccacgga gtacgcatcc tttcgtatca
     3901 tggaaagagc atcgatgact tcgtagcgaa gatgcgctct gtatcctatg accgtccaga
     3961 agcagcaatg cgtgcgatga ttgatcgacg acacctcgct cccgcatggg gtggaaaaac
     4021 gcctctctcg c
//
LOCUS       DUKB01000118           10218 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_55689, whole genome shotgun sequence.
ACCESSION   DUKB01000118 DUKB01000000
VERSION     DUKB01000118.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10218)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10218)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10218
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_55689"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1539)
                     /locus_tag="HA345_04050"
     CDS             complement(<1..1539)
                     /locus_tag="HA345_04050"
                     /inference="COORDINATES: protein motif:HMM:NF009945.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HIH84562.1"
                     /translation="MRVAVLLEDRCAPNMPAFAYLQKYAGMCGSECIQVIDNKCKILE
                     TACPVCLNRAKHCPGDAVILINLPKELDSDMTHCFGENGFRVFRLPTPREEAVIGILG
                     QNGMGKSTAVQILSGSLRPNLGDWGGEKEWDEIIDNYPKGELRDYLEQVASSGVNVAV
                     KPQYVDKLPKIFDGLVSELLARVDDRNEMEKWTEEMGIIHLMDRKLGALSGGELQRVA
                     ICATLLKDADVYFFDEATSYLDIHERLRVTKIIQALAEMGKRVLVVEHDLAILDVLCD
                     QVHIVYGERAGYGIYTPARTTRVAINAYLNGHLVEQNMRIRDKPIKFHTGRIRSEEIG
                     EPILQWGGIQKSLGEFTLNSDEGTVHSAEVVGIVGPNATGKTTLVRILAGELEADEGW
                     TTMDAKVSYKPQHVKATFDGTVREWLDTELGRAWHSGEFQTKVLRPLNVDQLLELQAR
                     KLSGGELQAVWIVLCLGKDADIYLLDEPSAHLDANARMEAAKAIRRTMVSKEKAAMVI
                     DHDIY"
     gene            complement(1599..2831)
                     /locus_tag="HA345_04055"
     CDS             complement(1599..2831)
                     /locus_tag="HA345_04055"
                     /inference="COORDINATES: protein motif:HMM:NF012705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene/squalene synthase family protein"
                     /protein_id="HIH84563.1"
                     /translation="MSETRTKESTIKVEAIRSTENREQKIASFRAAVELTSDAVRVVS
                     VTAVDALKASARFMGVATKEENLSNPFDNIDAPVWSEKDIPPFILNTAYDYCEALTIR
                     EAANFYHSFKYLPDEQRRAMCAYYAFCRRADDIADGDYRDLFPGSSGPKDEEALEYID
                     RIEEMIQRVPVVDRTSFIDKMSQLFFFRKKLSTAYNDLVSTDPIFLALKDTVQKYHIP
                     RIHLDDLIAGMEDDFFQDRYETFEDLYRYCYRVASTVGLVCIDIYGYENPKAREHAEA
                     WGVFMQLVNILRDVQEDADRGRVYLPIEDLARHGIQPEDVLEGRLKEHPGWEPFVTEF
                     IERIEVYRDRALDLLPMLKPKMRFSPAIMMGFYRSILKKIRRNDGDVFSQRVKLNKVE
                     KLTLALSIYIRHRFLTFF"
     gene            complement(2917..3921)
                     /locus_tag="HA345_04060"
     CDS             complement(2917..3921)
                     /locus_tag="HA345_04060"
                     /inference="COORDINATES: protein motif:HMM:NF012705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HIH84564.1"
                     /translation="MLIGPEADRLLENTSRSFFLTLKVLPRSIRKQVGLLYLLARVAD
                     TIADSKTGHVEVLLDALDAWDKSTSQDDVPMIDLSTLADLQTDSGEGTLLRNVGIPLA
                     ALATISDNDRIHVRRCLGIIIGGQTLDLERFGPANDSQAISPLNNDEELNDYAYRVAG
                     CVGEFWTSMTLAHLVSADGPASEQMFELGIRFGKALQMINILRDIPEDLRFGRCYIPK
                     TRLQAAGMEPDDLTEANHYEKFMPIHHDLLDITQGHLDAATRYILMLPSNQRRLRIAC
                     MLPVIIGQRTVDMLRVNNVLDSERRVKVPRKEIKRIMRQCIIATLLPGGARRLLMRSR
                     "
     gene            4044..5495
                     /locus_tag="HA345_04065"
     CDS             4044..5495
                     /locus_tag="HA345_04065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HIH84565.1"
                     /translation="MGSAVAMQCGSCAEEIPSDSLFCPECGARQTPGAVSGTGLNIAN
                     APTPNSAPDSANLPPVTPMQQPEQMGNFVGGGIAPTMDPNIVPQNIADGGADPEVIST
                     SFLSSLAAEIEGGNVAPQPTPSAQEARSTSDMVVDAMVEADREKKANARSAWLSMNQQ
                     SASDFLNAVGAVQNSASVDHGTRSLDEAEPIEAPRPRSPSSSSSLPNEQLVRRMVEVA
                     VRRVGRKRGVGTESPQVKVDGTSVRANVTYIDDGRVLDNPPELHSAFEHAIDTEIRLK
                     GYDVVLDVTLFRSKDGSVEFAWGFEPESAAEPASDEELFECGACGGLVRDSDPSCPTC
                     GAEFEDDDDDPEPAPARSAPPSGPRGPSRGGPAGGGPRGPSRGGPPSGPKGPSRGGPP
                     SGGSRGPSGPKGPSRGGPPGAGPKAPSGPKGPSRGGPPGAGPKGPSRGGPPSGPKGPS
                     GPKGPSGPKGPNRGGPPSGKKGPSGPKRKGPPK"
     gene            complement(5528..6451)
                     /gene="sucD"
                     /locus_tag="HA345_04070"
     CDS             complement(5528..6451)
                     /gene="sucD"
                     /locus_tag="HA345_04070"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017763541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HIH84566.1"
                     /translation="MSVWINEDAKVIVQGITGRQGLFHATKMAEYGTNLVGGCTPGKG
                     GQTVDLGVREVPVWDSVEDAIKATDADASVVYVPPPFAAGAIMEAAEAFDRIKGEGVI
                     ICITEGIPTLDMVKAVAYVDDRPGIRLIGPNCPGIITPGDTGGAKIGIMPGHIHAKGR
                     IGIVSKSGTLTYEAVAQTMSINEGQSTCIGIGGDPVNGTGFIDCLAAFQADSQTEAIV
                     MIGEIGGSAEEEAAAWAKDNVTKPIVGFVAGATAPPGKRMGHAGAIISGGKGTAAEKF
                     AAFEEAGIHVARDPSEIGAVLKTALEQAGLL"
     gene            complement(6451..7659)
                     /gene="sucC"
                     /locus_tag="HA345_04075"
     CDS             complement(6451..7659)
                     /gene="sucC"
                     /locus_tag="HA345_04075"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009493482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HIH84567.1"
                     /translation="MNIHEYQGKQLFRDAGVPVLDGVHCTTVGEALTAYDNLGSRVVA
                     VKSQIHAGGRGKGNLYCPETGELQMEGGVKIAFSREEVETYATNILGHILITKQTGEE
                     GKLVRNLYVESGCDIAHEYYLAMLVDREAKSILIMASTEGGMDIEEVAESTPEAIHKI
                     WIDPNSGLLPFQSRNLGAALGLEGGALKSFMKMLSKLHSVFIANDCTMVEINPLVKTV
                     DNGIIALDAKVGFDSNAEFRHKDWDDMRDMGEEDEAEIRASEAGLSYVKLDGNIGCLV
                     NGAGLAMATMDVIKLKGGDPANFLDVGGGANEEQVTTAFSIILEDPNVKGILVNIFGG
                     IMRCDIIARGVIAAVENLGLEVPLVVRLAGTNVDEGKAILAESTLNIHPADDLAAGAQ
                     RIVELIGGGE"
     gene            7767..8762
                     /locus_tag="HA345_04080"
     CDS             7767..8762
                     /locus_tag="HA345_04080"
                     /inference="COORDINATES: protein motif:HMM:NF012695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NDP-sugar synthase"
                     /protein_id="HIH84568.1"
                     /translation="MDVIVLAGGFGTRLRPWTSHMPKPLVPILDRAMIEHVVDVLPES
                     VVTRVLIAAGYGIEKMRIHFEEMSLPYEVVIVEETEPLGTGGAIANCRPHLSGGTVCV
                     INGDLLTSLQVEKMLVQHREDGNSVTISLWEVDDPSRFGVADFDSVSRKIQRFQEKPP
                     RDEAYSNLINAGTYLIEPELFDEMPLGRFSIERDLYPHVAESGRLGGFPFEGWFVDAG
                     TPPSYIEAVQTSIRHGRHRNGKIERDNWTLSAIHDQVIGSSISDDVVISGNAEVISSA
                     ILNGCKIEEGSRIKDCMIGSGSVVSKGAKIEGVVVDFDVIVPENHIQNGGRFPPE"
     gene            8763..>10218
                     /locus_tag="HA345_04085"
     CDS             8763..>10218
                     /locus_tag="HA345_04085"
                     /inference="COORDINATES: protein motif:HMM:NF016724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HIH84569.1"
                     /translation="MRRQWFIPAPFDTAVNGFGSIRFAGKLRPSQSAASSIIRRELES
                     GNRRLHIIAPPGSGKTILGLYVWSDMIRLPTLVLSPNSAIQAQWAARTSLFDLDGKDH
                     MVSTDPKAPGLLNSLTYQSLTLPIRGNETLDEAAITLWAERLVFGGEVANLEVAAIWQ
                     NDLKERNPDYFKDRMSFYRKLAREGIENEDDPLWSLHPSSRENIDLLKQAGIGLVILD
                     ECHHLLHHWGTTVRKILTELGDPIVLGLTATPPSTNDPKVAENYLDILGELDYQVPVP
                     ALVRDSNLAPYQDLVHFVRPTSKELKYIAQVDEKFVELLEMLRAPRNGDLSDRIVPLE
                     EWLHVALSDPESVAGVQFKEWPIGKGKTSGEDFLNQARLHLLSMNRVLPEGVPHPPFE
                     MHKAGTSDLDRHTPLIDRYVRYGLRRSASPLDHELGQEAIDRLRLLGRQITETGVRPA
                     ASPVGRVMGYSEAKTQGVLSILKSEMQDLGGNIRA"
BASE COUNT         2398 a         2508 c         2469 g         2843 t
ORIGIN      
        1 gtatatgtcg tggtcaatca ccatagcagc cttctctttg gagaccattg tccttctgat
       61 tgcctttgca gcctccattc tagcattagc atctaggtga gccgagggtt catccaaaag
      121 gtagatgtca gcatctttac caagacatag aacaatccaa acagcctgga gttctcctcc
      181 tgacagttta cgtgcctgta attcaagcaa ttgatccaca tttagtggcc tgagaacttt
      241 agtttggaat tcaccagagt gccatgctct acctaactcg gtatccaacc attctcttac
      301 tgtaccatcg aaggttgctt tgacatgttg tggcttgtag gataccttag catccatagt
      361 agtccatcct tcgtctgctt ctaattctcc tgcaagaatg cggaccaatg ttgtctttcc
      421 agtagcattc ggccctacta tgcctactac ctctgcagaa tgaacagtgc cctcatctga
      481 attaagagtg aattcaccca atgatttctg tatccctccc cactgtagta ttggttcacc
      541 aatttcttcc gatcttatcc gaccagtatg gaatttaatc ggtttatctc ggattcgcat
      601 gttttgttca actagatggc cattgagata cgcattgata gcaactcgag tagttcttgc
      661 tggagtatat attccgtagc ctgctctctc tccatagacg atgtgtactt gatcacaaag
      721 aacgtcaaga atcgccaaat catgttcgac aacgagtact ctcttaccca tctcggctaa
      781 tgcttgtatg attttagtta ccctcaatct ttcatgaatg tctaggtacg atgttgcttc
      841 atcaaagaaa taaacatctg cgtccttcag aagtgtagca catatcgcaa ctctttgtag
      901 ttctccccct gacaatgctc ctagttttcg atccatcagg tgaatgatgc ccatttcttc
      961 ggtccatttt tccatttcat tacgatcatc tactctagct agaagttcac taactaaacc
     1021 atcgaatatt tttggtaatt tgtctacgta ttgtggtttt actgcaacgt ttactccgga
     1081 agatgcaact tgctctaggt aatctctgag ttcccctttg ggataattat caataatttc
     1141 atcccattct ttttctccac cccaatcgcc aagattaggg cgtagagatc cggagagtat
     1201 ctgtacagca gtggatttcc ccattccgtt ttggcccaga atgccgatga ctgcctcctc
     1261 tcgtggcgta ggtagacgaa atactctgaa tccgttttct ccgaagcaat gagtcatatc
     1321 actgtcaagt tcttttggta aattgattag aatcacagca tctcctggac aatgttttgc
     1381 tctattcaaa caaacagggc aagcagtttc caagatcttg catttgttgt cgattacctg
     1441 tatacattcg ctcccacaca tcccggcata cttctgaaga tatgcgaaag caggcatgtt
     1501 gggagcgcac cggtcctcca gtaagaccgc tacacgcatt ttctattctc ctttgtcttc
     1561 gctattggta attacctgct aaggttgcct agaatcgttc agaagaacgt caagaaacgg
     1621 tgtcggatgt atatcgatag agcaagtgtc aatttctcga ccttgttcag tttcacccgt
     1681 tgagagaata catcaccatc atttcgacgg attttcttca agatagaacg gtagaacccc
     1741 atcatgatgg ctggactgaa tcgcatcttt ggcttcaaca ttggaagcaa atcaagggca
     1801 cgatcacggt aaacctcgat tctctcgata aattctgtaa caaacggttc ccatccaggg
     1861 tgttctttga ggcgtccttc aagcacatcc tctggttgga ttccatggcg tgctaggtct
     1921 tctattggga ggtataccct gcctctatct gcgtcctctt gaacatcgcg aaggatgttg
     1981 actaattgca taaacacccc ccaagcttca gcgtgttcac gagcttttgg attctcgtat
     2041 ccatatatgt caatacagac gaggccaacg gttgaagcaa ctctgtagca gtatctgtat
     2101 agatcttcaa aggtctcgta tctgtcttgg aagaagtcat cttccatgcc tgcgattaga
     2161 tcatcaaggt ggattcgagg gatatggtac ttctggacgg tgtcctttag agctaagaag
     2221 attggatcgg ttgatacaag gtcgttgtaa gcggttgaga gtttttttcg gaagaaaaat
     2281 agttgcgaca ttttgtcaat gaaactagta cgatcaacaa caggtacgcg ttgaatcatt
     2341 tcctcaattc gatcaatata ttcgagggcc tcctcatcct tcgggccgga tgatcccgga
     2401 aataaatcac gataatctcc gtcggcaata tcgtcagccc ttctacagaa ggcgtagtag
     2461 gcacacattg ctcttcgttg ttcatcgggc agatatttga atgagtgata gaagttggct
     2521 gcttcacgaa ttgtaagtgc ttcacagtaa tcgtatgctg tattcagtat gaagggaggg
     2581 atgtccttct cggaccaaac cggagcatcg atattatcga aagggtttga caaattttct
     2641 tctttggttg ccacacccat gaatctggcc gatgccttta gcgcatccac ggcggttacg
     2701 ctgacgaccc gtactgcgtc agaggtgagc tcaaccgcgg ctcgaaaact tgcaattttc
     2761 tgttcgcgat tttcggtaga gcgtatggct tcgaccttta tggtcgattc cttggtacgc
     2821 gtttccgaca tggtatcagg tataacgaac tcccggccct atatcaagtg aagggatacg
     2881 ggcatcgaag aagctattct ggaacatttc gatgtttcat cggctccgca taagaaggcg
     2941 ccgagcccct ccagggagga gagtcgcgat gatacattgt ctcatgattc gtttgatctc
     3001 ctttctcggt actttcacgc gcctttcact atcaagtacg ttgtttactc gtagcatatc
     3061 tacagtccgt tgaccgataa tgacgggtag catacatgca attcgcagcc gtcgttgatt
     3121 tgagggtagc atgaggatgt atcgggtagc cgcatcgagg tgtccttgcg tgatgtcgag
     3181 aaggtcgtgg tgaatcggca tgaatttctc gtagtggttt gcctcagtca gatcatctgg
     3241 ttccatgcct gccgcttgaa gacgtgtctt cgggatgtaa catcttccga atctgaggtc
     3301 ttctggtatg tctcggagta tgttgatcat ctgtagcgcc ttgccgaacc gaatccctag
     3361 ttcaaacatc tgctcactgg cggggccgtc cgcagatact aggtgagcta gtgtcattga
     3421 agtccagaat tctccaacac agcctgcgac tcggtaggcg tagtcattca gttcctcatc
     3481 attatttagt ggcgagattg cttgcgaatc gtttgctggt ccgaatcgct ccaagtcgag
     3541 tgtctggcca ccaatgatga tcccgaggca tcgacgaaca tgaatccggt cgttgtctga
     3601 tattgtggcc aatgctgcaa gaggaattcc gacattcctc agtaatgtcc cctcacctga
     3661 atccgtctgc aaatctgcca atgtagatag gtcaatcatt ggtacatcat cttggcttgt
     3721 gcttttgtcc catgcatcta gggcatctaa gaggacttca acgtgccctg ttttggaatc
     3781 agcgatagta tcggcaaccc ttgcgagaag atagagcaat ccaacctgct tcctgattga
     3841 acgaggcaga actttcagag ttaggaagaa ggaacgggat gtattctcaa gtagacgatc
     3901 tgcttccggt ccaatgagca tccgggcacc tctaagtgaa tactgaggcc atgtgttctt
     3961 gaccctgtgg ggtgaaagga tttcacagac tgtattgctg atgtatcctc tcaggaacgg
     4021 cttaatgaat aggttccgat tccatgggtt cagcggttgc tatgcagtgc ggttcgtgtg
     4081 cagaggagat tcccagcgat tccctgtttt gtccagagtg tggggcgcgt cagactccgg
     4141 gggccgtctc tggaactggc cttaatatag caaacgctcc aactcctaat tctgcccctg
     4201 attctgctaa tcttcctcca gttaccccaa tgcaacaacc cgaacagatg ggtaattttg
     4261 ttggaggggg gattgcacct actatggatc cgaatattgt gccccaaaac attgcagatg
     4321 ggggggctga tccagaagtt atctcaacga gtttcctctc gtctttagcc gctgagattg
     4381 agggtggtaa tgttgcacct cagcccacac cttctgcaca agaagcccgg tctacatcag
     4441 atatggttgt ggacgcgatg gtggaagccg atcgtgagaa gaaggcgaat gcgcggtctg
     4501 cttggctctc catgaatcag cagagtgcta gcgattttct gaatgctgta ggcgcagttc
     4561 agaattcagc ttcagttgac catggaacgc gatctctcga tgaggctgaa cccattgaag
     4621 caccgaggcc acgttctcct tcgtcctcaa gcagccttcc aaacgagcaa ttagttcgta
     4681 gaatggtgga ggtagcagtc cgtcgagttg gtcgtaaacg aggcgtagga actgagtctc
     4741 cacaggtgaa ggtagatggt acttcagtcc gcgcgaatgt cacttacatc gatgatggcc
     4801 gcgttcttga taatccacct gaactccatt ccgcatttga gcatgcgatt gatactgaaa
     4861 ttcgtttgaa gggatatgat gtagttctcg atgttactct cttccgtagc aaggatggtt
     4921 cagtcgaatt cgcttgggga tttgaacccg aatcagcagc agaacctgcc tctgatgagg
     4981 aattattcga atgcggcgca tgtggcggcc ttgttcgaga cagtgatcct tcctgtccta
     5041 cctgcggtgc agaatttgag gacgatgatg acgatccaga accagcacct gcacgtagcg
     5101 cgccccctag tggtccgcgt ggtccatcaa gaggcgggcc tgcaggcgga gggccacgtg
     5161 gtccatctcg cggaggccct cctagtggac ctaagggccc ctctcgtggc ggccccccaa
     5221 gtggtggttc gagaggtcca tctggtccta agggaccatc ccgcggcggt ccacctggcg
     5281 ccggtccaaa ggctccatct ggtccaaagg ggccatctcg tggcggcccc cctggcgctg
     5341 gtccaaaggg gccatctcgt ggcggccccc ctagtggccc caagggtccc tcaggaccca
     5401 agggcccatc tggccctaag gggccaaatc gaggaggccc tcccagcgga aagaagggcc
     5461 catctggacc aaagcgtaag ggtccaccta agtgattgct aagatcctaa cttgaggtta
     5521 ggtaaattca gagaaggcct gcttgttcaa gagcagtttt tagcacagct ccaatttctg
     5581 atgggtctcg agcgacatgg atgccagcct cttcaaaagc agcgaatttt tctgcagcag
     5641 taccttttcc tccactgatt attgctcctg cgtgtcccat gcgttttcca ggtggagcgg
     5701 tggcgccagc aacgaatcct acgattggct tggtaacgtt atccttcgcc caagcggcgg
     5761 cctcttcttc agccgaccct ccaatctcac ctatcatgac gatggcttcg gtttgtgaat
     5821 cggcttggaa ggcagcgaga caatcgatga atccagtccc attcacgggg tcgcctccaa
     5881 tcccaatgca ggtagattgt ccttcattga tactcattgt ctgcgctacc gcttcatagg
     5941 tcaaagtacc agatttggat acgataccaa tacgtccttt cgcatggatg tggccgggca
     6001 tgataccaat cttggcgcct cctgtatccc ctggagtgat tattcctggg cagttgggtc
     6061 caatcaatcg gattcctgga cggtcatcga catatgcaac cgctttgacc atgtccaatg
     6121 tagggattcc ttcagtgatg cagataatga ctccttcacc cttgatcctg tcgaaggctt
     6181 cagccgcctc cataatcgca cctgcggcaa aaggtggagg tacatagacg acgcttgcat
     6241 cagcgtccgt agccttgatc gcatcctcaa cggaatccca tacaggtact tctcgcacac
     6301 cgaggtcgac agtttgtcct cctttacccg gagtacaccc tccgactagg tttgtaccgt
     6361 attccgccat cttagtcgcg tgaaaaagtc cttgacgtcc tgtgatgcct tgcacaatca
     6421 ctttcgcatc ctcatttatc catacagaca ttattcgcca cctccgatta gttcgacgat
     6481 tcgttgggct ccggcagcta ggtcatccgc aggatggata ttgagcgtgc tctcagcaag
     6541 tatcgccttg ccttcgtcga cattcgtacc tgctaggcgg acaacgagtg gtacctccaa
     6601 accgagattt tccaccgcgg cgataacacc gcgggcaatg atgtcacagc gcattatgcc
     6661 tccaaagata ttgacgagaa tacctttcac attcgggtcc tcaagaatga tactgaatgc
     6721 agttgttact tgttcttcat tagcgcctcc gccgacgtca aggaagtttg cagggtctcc
     6781 acctttgagt ttgatgacgt ccatggttgc cattgcaagt cctgcaccat tcaccaagca
     6841 accgatgttg ccatcgagtt tgacgtaaga gagaccggcc tcacttgcgc ggatttccgc
     6901 ttcatcctct tcacccatat cacgcatgtc atcccagtcc ttgtgacgaa attctgcatt
     6961 ggaatcgaag ccgacctttg catccagggc aatgattccg ttatcgacag tcttcacaag
     7021 tggattgatt tctaccattg tgcagtcatt tgcaatgaat accgaatgga gcttagagag
     7081 catcttcatg aatgacttca gggcacctcc ttcaagtcct aatgcggcac caaggtttct
     7141 cgattggaat ggtagtagac ctgaattcgg atcaatccaa atcttgtgga ttgcctcagg
     7201 tgtggattca gcaacttctt cgatatccat cccgccttcg gtggatgcca taatcaggat
     7261 ggactttgct tcacggtcca cgagcatagc aaggtagtat tcgtgggcga tgtcacatcc
     7321 agattcgacg tataggttgc gaacaagttt gccttcctca cctgtctgtt tagtgatgag
     7381 tatatgtcca aggatgttag tggcgtaggt ttcaacctct tctcgagaaa aagcaatctt
     7441 tactccacct tccatctgga gttcgcctgt ttctgggcag tatagattcc cttttccacg
     7501 ccctcctgcg tgaatctgac tcttcacggc gacgacccta gaccccagat tatcgtaagc
     7561 agtaagcgct tctccgaccg tcgtgcaatg tactccatcg aggactggca ctccggcgtc
     7621 tctgaacagt tgcttgccct gatactcgtg gatgttcatg gtgctcagcc aagggtcagt
     7681 ggagtccgtc tttaaccctg accgatggaa tatatgattc gaaatatagg cagaatgcac
     7741 atgaatcagt tatgtctggg ctatacatgg atgtcatcgt tttagccggt ggttttggca
     7801 ctcgccttcg tccatggacc tcgcatatgc cgaaacccct tgtgcctatt cttgaccgtg
     7861 ccatgatcga gcacgtggtg gatgtcctcc ctgaatccgt cgtcactcgt gttcttatcg
     7921 cagctggtta cggtatcgaa aagatgcgta ttcattttga agaaatgtcg ttaccctatg
     7981 aggtcgtaat tgtcgaggag accgaaccgt tggggactgg aggggcgatt gccaactgcc
     8041 gccctcacct ttccggcggt acagtgtgtg tcataaacgg tgatctactg acgagccttc
     8101 aagttgaaaa aatgctagtt cagcaccgag aagatgggaa cagcgtcacg atatcgctat
     8161 gggaggtgga tgatccatcg aggtttggtg ttgctgattt tgattcggtt tcgagaaaga
     8221 tccagaggtt ccaggagaaa cctccgaggg atgaggccta ttcgaatctc atcaacgcgg
     8281 gaacctatct aatcgaacct gaactattcg acgagatgcc tctaggtcga ttcagtattg
     8341 agagggatct ctatcctcat gttgctgaaa gtgggcgttt aggtggattc ccatttgaag
     8401 gctggttcgt cgatgctgga actccgccat catatatcga agcagtacag acctctattc
     8461 gccatgggcg tcatcgaaat gggaaaatcg agcgtgataa ttggactctt tctgctatac
     8521 atgaccaagt cataggttca tcaatttctg atgatgttgt aatctcaggg aatgctgaag
     8581 tcattagttc tgcaattttg aatggttgta aaatcgaaga aggttcacgg attaaagatt
     8641 gcatgattgg ttctggaagc gtggtaagta aaggggcaaa aatcgagggt gtagtcgttg
     8701 attttgatgt catcgtccct gaaaatcata ttcagaatgg cgggcgtttc cctccagagt
     8761 aaatgcggcg acagtggttt atcccagcac cttttgatac ggctgtgaat ggtttcggga
     8821 gcatccggtt cgcgggtaag ttgcgccctt ctcagagtgc ggcttcttcc atcatccgtc
     8881 gtgaacttga atccggaaat cgtcgtctac acattatcgc cccacccggt tcaggtaaga
     8941 cgattctagg tctgtatgtc tggtctgaca tgattcggtt acctaccctt gttctttctc
     9001 cgaattctgc aattcaagct cagtgggcag cacgcacctc tctgttcgat ctcgatggca
     9061 aagatcacat ggtttcaaca gacccaaaag cacccggtct tcttaattcg ctgacctatc
     9121 aatcattgac gttaccaatt cgtgggaatg agacactcga tgaagctgcg attactttgt
     9181 gggccgagag gttagtgttt gggggcgagg ttgctaacct cgaagttgct gctatttggc
     9241 aaaacgatct caaggagaga aatcctgact acttcaagga caggatgtcg ttctatagaa
     9301 agttggcaag ggaggggata gagaatgagg acgatccttt gtggtcattg caccctagtt
     9361 ctagggagaa tatcgatctt ttgaaacagg ctggaatagg tcttgtaatt ctcgatgaat
     9421 gtcaccacct tcttcatcac tggggtacta ctgttcggaa gattttgacc gaattaggtg
     9481 acccaattgt ccttggtttg acagccactc ctccaagtac gaatgacccc aaagtcgctg
     9541 agaattatct cgatattctg ggggaactcg attaccaagt acctgtgcca gccctagttc
     9601 gcgatagcaa ccttgcaccg taccaagacc ttgtccactt tgtccgtcca acaagcaagg
     9661 aactgaagta tatcgcccaa gttgatgaga agtttgtcga acttcttgag atgcttcgtg
     9721 ctccaagaaa tggcgatctt tcagatcgga ttgttccttt ggaggaatgg ctacatgttg
     9781 ctctctctga tcctgaatca gttgcaggag ttcaattcaa agaatggcca atcggtaaag
     9841 ggaagacgtc tggtgaagat tttcttaatc aggctcgatt acatcttcta tccatgaatc
     9901 gggtgctccc cgaaggtgta ccacatcctc cgtttgagat gcataaggcc ggaacttcag
     9961 atcttgatag gcacacacct ctgattgatc gttatgttcg ttatggattg cgacgttctg
    10021 caagtccttt agatcatgaa ttaggtcaag aggcaataga tcgattacgt cttcttggcc
    10081 gtcagattac tgagaccggc gtccgtccag ctgcatctcc agtgggtcgt gtgatgggtt
    10141 acagtgaggc gaagacgcaa ggtgttctct ctattttgaa gtctgagatg caagatcttg
    10201 ggggcaatat ccgtgctg
//
LOCUS       DUKB01000119            2673 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_292780, whole genome shotgun sequence.
ACCESSION   DUKB01000119 DUKB01000000
VERSION     DUKB01000119.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2673)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2673)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2673
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_292780"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            258..1352
                     /locus_tag="HA345_04090"
     CDS             258..1352
                     /locus_tag="HA345_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84570.1"
                     /translation="MSTKFYQLFPDDRKHLIGTLSGSSIIDEMSADEFRTMIVECMTG
                     LNPRIHTENWAQSRVFHGVFTGIHEMYDRGKESDPDFITHAPQSAAEYLRSHHTSTRR
                     SPNRLIKEDLLLCQWICNLTSKGWDNILQANPDNLTEWGNSVIDSIASVPFGDLEKNI
                     INTTIYNASLAKKGGLKSAMGNLFEPLLLYSSLSACGLRFVSADLMDRARGPCFTLDV
                     NEGRQADAQIKTGIDHPAKIDIDIGFIGKGNPEIIADKTQRFGNMLGGGQNPLEHTII
                     IVSAIPETDRAQLVVRQAKALGAKVIPMSQNNWVYNLSVELARLGVTGVVKIPHQQQE
                     ARGALNRTLESSRDIINTIPRNLEVPVHWD"
     gene            complement(1340..2632)
                     /locus_tag="HA345_04095"
     CDS             complement(1340..2632)
                     /locus_tag="HA345_04095"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HIH84571.1"
                     /translation="MLDKADEESTTETLGESVAVNRRYKVTVLEQVREIVGKHIGGSL
                     ARDDWDFGLGEINAPSLKLKPSDHIPSEAMQRNHQWRIQIISSSSKERIGHFVLYAYT
                     GEVCQELSSDTNTIIRRIDIIRKEGYLQPIVEKSDKHRSKMRKSALSNMIIKGDSRKL
                     SKNIKPEEIDLIFTSPPYFDARLMYAEYASYEEYLEMLTEVFQECHKVLHEGRFIIVN
                     VSPVIVPRKNRASASTRVPIPFDVARILGEIGFEFIDDIQWVKPIGAAGHRGRRFSAD
                     RNPMQYKTVPVTENVLVYRKKSSLLIDWFIRKHHDPEIVRRSKVKDGYERSNLWEIQP
                     ANDPVHRAVFPLELAEKVIQYYSFEDDVVLDPFAGIGTTGKAAARLNRRFVMVDLDGE
                     YLEGKKKKSYVDEMWNRLPEWGVDPDSVKRDNWTNQSQ"
BASE COUNT          693 a          685 c          611 g          684 t
ORIGIN      
        1 atgtaaacta caaaattaca aaaagtcgcc aaataaccgt tttctagaag gttccctgac
       61 cccagcgtcc accactctct gcagcgttta gaaccccgtt acgatgtcgc cgaggactat
      121 gatgttgtct tcttttctgt accaccggaa tgtgtacccg cctcatagaa ataccaataa
      181 tccacgacca ccaagaggga atgttgaaaa aaaataccgg aagatggtgt taagatagtc
      241 gaccttatgc cagagacgtg tccactaagt tctaccaact cttccccgac gacaggaagc
      301 acctgattgg gaccctctca ggcagctcga tcatcgatga gatgtcggcg gacgagttca
      361 gaaccatgat cgtcgaatgc atgactgggc tcaaccctcg gatccatacc gagaactggg
      421 cgcaatcgag ggttttccac ggggtgttca ctgggatcca tgagatgtac gaccgaggta
      481 aggaatcgga tcctgacttc ataacccatg ccccgcagag cgctgccgag tacctaaggt
      541 cccatcacac gtctactaga agatctccga atcgactgat taaggaagat ctgctcctgt
      601 gccagtggat atgcaatcta acaagcaaag gatgggacaa catactccaa gcgaaccctg
      661 acaatctaac agagtgggga aattccgtga ttgattcaat tgcttccgtt ccattcggag
      721 acctcgagaa aaatatcatc aacacgacca tttacaacgc ctcactagcg aagaagggcg
      781 gtctgaaatc cgcgatgggt aacctgtttg agccccttct gctgtactca tcgctcagcg
      841 cctgcggact gagattcgtg agtgctgact tgatggacag agcacgaggc ccctgcttca
      901 ccttggacgt caacgaaggt aggcaggccg acgcgcaaat caaaactgga atcgatcatc
      961 ctgccaagat cgatattgat atcggcttca tagggaaggg aaatccggag ataattgcgg
     1021 acaagaccca gcggttcggc aatatgttgg gtggaggaca gaaccccttg gagcacacaa
     1081 tcatcattgt cagcgcgata cctgagacgg atagagccca gttggtggtg agacaagcca
     1141 aagccctcgg cgcgaaggtg attccgatga gtcagaacaa ttgggtttac aacttgagtg
     1201 tcgaactcgc gaggcttgga gtgacgggtg tcgtgaagat cccacatcag caacaggagg
     1261 ccagaggggc gttaaatcgc accctggaat cgtcacgaga tatcatcaat acgatcccga
     1321 gaaatcttga agttcccgtt cattgggact gattggtcca attgtctctc ttcacagaat
     1381 ctggatctac accccactct ggaagtctat tccacatctc atcgacgtac gacttctttt
     1441 tcttcccttc gaggtattct ccgtctagat caaccatcac aaatctacga ttcaacctcg
     1501 ccgccgcttt gcctgtagtc ccaataccag cgaatggatc tagcacgacg tcgtcctcga
     1561 agctgtagta ctggatcacc ttctcagcaa gctccagtgg gaagacagcc ctgtggacag
     1621 gatcgttggc aggttggatc tcccaaaggt tactcctctc gtagccgtct ttgaccttcg
     1681 atcgtcgtac tatttctgga tcgtgatgtt tgcgtatgaa ccagtcgatt aggagggagc
     1741 ttttcttcct gtaaacaaga acattctccg taactggtac ggtcttgtac tgcataggat
     1801 tcctgtccgc ggaaaacctc ctgccacgat ggccagcggc tccgattggc ttgacccact
     1861 ggatatcgtc aatgaattcg aagccaattt cgcctagaat tctagcgaca tcgaatggaa
     1921 tagggacacg agttgaagca gaggctcgat tcttcctcgg aactattaca ggtgacacgt
     1981 taactatgat gaatcttcct tcgtgcaata ccttgtgaca ttcttggaaa acttctgtga
     2041 gcatctccag atattcttca taactagcat attcggcgta catcaaccta gcgtcgaagt
     2101 atggaggtga ggtgaaaatt agatcgattt cctccggttt tatgttttta ctaagcttcc
     2161 gcgagtcgcc tttgattatc atgtttgaaa gagccgattt cctcatctta cttctgtgct
     2221 tatccgattt ctctacaatc ggttgcagat acccttcctt cctgattata tcgattctcc
     2281 tgattatggt attggtatcg gaagacaact cttgacaaac ctctcccgtg tacgcgtaaa
     2341 gcacgaaatg acctattctc tccttcgatg aagacgaaat aatttggatt cgccattgat
     2401 gattcctctg cattgcctca ctaggaatat ggtcgcttgg ctttaacttc aaagaaggtg
     2461 cattgatctc cccgagacca aaatcccaat catcgcgggc tagggatccg cctatgtgct
     2521 taccgactat ttctcttact tgttctaaga ctgtcacctt gtaccgacga ttgactgcta
     2581 ctgactcgcc aagagtctca gtagtacttt cttcatcggc cttatccagc atggctaagg
     2641 ctcaactaat caccttatga acaattgcaa agg
//
LOCUS       DUKB01000120            5115 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_226378, whole genome shotgun sequence.
ACCESSION   DUKB01000120 DUKB01000000
VERSION     DUKB01000120.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5115)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5115)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5115
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_226378"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1565
                     /gene="mutS"
                     /locus_tag="HA345_04100"
     CDS             <1..1565
                     /gene="mutS"
                     /locus_tag="HA345_04100"
                     /inference="COORDINATES: protein motif:HMM:NF003810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HIH84572.1"
                     /translation="LARMPNWTTLTSASTDDLLPHLGAPLVSLDSMREMLEAKIVNEP
                     PATIRDGGMFQNGVDDTLDQLRAQSGEGKAWLERFEQEERERLEIPSLKVRYNRQFGY
                     YIEITKTHIDKVPEHYRRRQTLTNAERYTTDNLAEWEDQILNAGSRGNELEYRMFLQL
                     RDQIKARSAELADIARRIAAIDVLSSLASHARERSWVRPEMLDDERIDITAGRHPVLE
                     SMDGFVPNDISFSDNRRFLLLTGPNMGGKSTYLRQTALIMILAQAGSFVPATKAKLGI
                     VDRVFTRVGAHDDLRRGRSTFMVEMIEVAHILRRATPKSLVLLDEIGRGTSTFDGLAI
                     AWSVTEDLARRTACRSLFATHYHQLVGLEEEVDGLVNIHVQVAEIENSIRFLHTIAEG
                     PCDDSYGVQVAALAGLPIPVIERARDLLMFLEQQAEGARCGESGIPLARPKGQSSLFG
                     WMLPKGQMAESSEEKKSLPSESMMNSRQRELLDRLATLEPDTMTPREALEALYALKAE
                     ENRGEVPDWVEE"
     gene            1571..3517
                     /gene="mutL"
                     /locus_tag="HA345_04105"
     CDS             1571..3517
                     /gene="mutL"
                     /locus_tag="HA345_04105"
                     /inference="COORDINATES: protein
                     motif:HMM:NF020260.1,HMM:TIGR00585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HIH84573.1"
                     /translation="MERTPIIQLDEATIGRIAAGEVVERPAQVVKELVENSIDAGARR
                     IRVVIENGGFQRILIEDDGHGIPPEELPLAINRHATSKLRNSDDLASIITLGFRGEAL
                     AAVGSVSKLTIRSRQTGADGAVIEVVNGNVGSVQPTGMADGTSIEVQEIFAAVPARMA
                     FQRRPTTESAAVVDVVTAYTLAHPEVNFSIEVDGRTTLTSPSVEQPEDRLFDVLGGIS
                     ERLIPLKPPSGDNQAPGDERWRGWISPPSIDRGRTDDIHIFVNDRSVAATDFLQSIRR
                     GYHSRLMVGRHPMCVLFLDLPAEEVDVNVHPTKREVRLRNSWRVLERLERAIAHTLLD
                     IPTGAPSAPNQPLGAVERMTETSTELKERIVPPRVPSSQPSWMTAATSVQSRFSQPIS
                     PSESQHERPRPVSTSPTPQATLPGMDSNPIAPALSSEERHLHRHSNHGDPVSPMDEPA
                     QSDQKTNVPVMEPLAQFADTYILAQGGDELFIIDQHALHERIRYERLRNEMTSWEAQN
                     LISPLELELSPSQIQIVEGYRELLTKLGLEFDKEAQRLLSVPRLLIGDERLQGFIRDL
                     LTDLSTTEGMMLDSVERLQDDIAFMRSCRGAVKANQRLEIAEMRRLLADMSTIHNPWA
                     CVHGRPTVLRMGINEMDDHFGRLG"
     gene            3576..>5115
                     /locus_tag="HA345_04110"
     CDS             3576..>5115
                     /locus_tag="HA345_04110"
                     /inference="COORDINATES: protein motif:HMM:NF013702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84574.1"
                     /translation="MEDTPVGYRAVRWLAKEVSETWFREHGAIETDRIPEGRGVLFAA
                     WHPGSLIDPLVMISTLPGRITFIAKHTLFSVPILGRMMKAAGARPIYRSIDKDKIEGD
                     QKKGNQAVIETVADILVEEGNCVIFPEGVSHLSSQPERVKTGPARMILLALRRARKEG
                     KSDPCIVPIGLHYSNPNRFRERALVEVHPVMELPPLPEEEGAPNPTKESIEEFGIEEA
                     ADRAWVIAVTDNLGGELQRTSHGLESWEDRRLLWRTRGLLSVHRNRAIGRTEAATFEE
                     AVLGARRMRAAWLHISEKSPEKAQYLRSKVEDHAGLMQSYGLEEHELYDRNRRPGFLG
                     MLSAMIQFIWCWVWMLGLITWSALIGSYPPYRIAGPIATKAAIDEPYALGTKKIAIAV
                     MLLPIWWFLISFPVAWLLASSSSPIWNILGHGFLGTLENSITSIPWPLLTFIIMPLWA
                     VGARLHLRLWRRSVRAAHTLKRWFRLRSGSVPWKELSDVQLKLAETLDGIGNNLVLPG
                     DPDWK"
BASE COUNT         1424 a         1249 c         1256 g         1186 t
ORIGIN      
        1 ctctagcacg tatgcctaac tggaccacat tgacatcggc ttcaacggat gaccttctgc
       61 ctcacctcgg tgcacctctg gtctccctcg atagtatgcg tgagatgttg gaagcaaaaa
      121 ttgtgaacga accaccagcg acaatacgtg atggtggcat gttccagaac ggtgtggacg
      181 atacattaga ccaattgcgt gctcaatcag gtgaggggaa agcttggctg gaacgttttg
      241 agcaggagga acgagaacga ttagaaattc cttcattgaa agtacgatat aaccgtcaat
      301 tcggttacta catcgaaatc accaagactc acattgacaa agtgccggag cactacaggc
      361 gacggcagac tctaacaaat gcagaacgct acacaactga caatctcgct gaatgggagg
      421 accagattct gaatgctggt tcaagaggta acgaactaga gtatcgaatg ttcctacaac
      481 tccgtgacca gattaaggca cggagtgcgg aacttgcaga cattgcacgg agaattgctg
      541 caatcgatgt gttgagcagt ttagcatcgc atgctcgtga gcgatcctgg gttcgcccag
      601 aaatgttgga tgacgaacgg atcgatatta ctgcaggacg acatcctgtt ctcgaatcta
      661 tggacggttt tgtccccaat gacatatcat tcagtgacaa tcgacggttc ctactcctca
      721 cagggccgaa tatgggcggc aagtcgacct atcttcgaca aactgctcta atcatgattc
      781 ttgcacaagc agggtccttc gtaccggcta ccaaagcgaa actagggatt gtggatcgtg
      841 tctttacacg tgttggcgca catgacgatc ttcgtagagg acgttctact ttcatggtag
      901 agatgattga ggtagcacac atactacgta gagcgactcc gaagagccta gtacttctag
      961 atgaaatcgg gcgtggcacg tccactttcg atgggctagc catcgcttgg tcggttactg
     1021 aagatcttgc tcgacgaaca gcctgccgtt ctctcttcgc aacacattat caccaactcg
     1081 taggactaga ggaggaggtt gatggattag tgaacatcca tgtccaagtc gctgaaatcg
     1141 agaatagtat ccgattcctc cacactatcg ccgaaggtcc ttgcgatgat tcctacggag
     1201 tacaagttgc cgctctagcc ggacttccga taccagtcat tgaacgtgca agagacctac
     1261 tcatgttcct agaacagcaa gctgaaggag caaggtgtgg tgaatcaggt atccctctcg
     1321 ctcgaccaaa ggggcaatcc tccctatttg gatggatgct ccccaagggg caaatggctg
     1381 aatcatcaga agaaaagaaa tcactaccat ctgaatcgat gatgaattca agacaacgcg
     1441 aactccttga tcgacttgcc acactagaac ccgataccat gactcctcgt gaagcattgg
     1501 aagccctata tgcactaaag gcggaagaaa acagaggcga agtacctgat tgggtcgagg
     1561 agtgaaccaa atggaacgaa cgccgattat ccaacttgat gaagccacaa tcggacggat
     1621 tgctgcaggt gaagtcgtcg aaagaccggc tcaagtcgta aaggagctag tggagaacag
     1681 tattgatgct ggagcaagac gaatccgggt cgtaatagag aacggaggat tccaacgtat
     1741 tctcatcgaa gacgatggac atggcatccc gcctgaagag ttaccccttg caataaatcg
     1801 tcacgcaact agtaaactac gcaattctga tgatctcgca tccatcatca ccctcggttt
     1861 ccgaggtgaa gctcttgcgg ctgtcggctc agttagcaaa ctaaccatta ggtcacgtca
     1921 aacaggtgca gatggtgcag taattgaggt tgtaaacggt aatgtcggta gtgttcaacc
     1981 aactgggatg gcagacggga cgagtataga ggtacaggaa atcttcgcag ctgtacctgc
     2041 cagaatggca tttcaacggc gacctacaac agaaagtgca gctgtggtgg atgttgtcac
     2101 agcctatact ctggctcatc cagaggtaaa cttcagtatc gaagttgacg ggagaacaac
     2161 acttacctca ccatcggtcg aacaacctga ggaccgactc ttcgatgtac tcggcggaat
     2221 atcagagaga ttaatcccac tcaaaccccc ttcaggtgac aatcaagcac ccggagatga
     2281 aagatggaga ggttggatat ctcctccatc catagataga gggcgaaccg atgacatcca
     2341 tatattcgtc aacgatagat cggtcgcagc cactgatttc ctccaatcaa ttcgaagagg
     2401 ataccattct cgattgatgg tgggtcgtca tccgatgtgt gtattattcc tcgatttacc
     2461 ggcagaagag gtggatgtca atgtacatcc aacaaaacgt gaagtccgac tacggaactc
     2521 gtggcgagtt ctagaacgtc tggaacgagc cattgcacac acactcctcg acatacccac
     2581 tggcgcccca tccgctccga atcaaccact aggagcagta gaaaggatga ctgaaaccag
     2641 tactgaactg aaagaacgta tagttccgcc tcgagttccg tcttctcaac catcttggat
     2701 gactgctgcg acttccgtcc aaagtagatt cagtcaacca atatctccat ccgaatccca
     2761 acacgaacgt cctcggcctg tgtcgacttc acccacccct caggcaaccc ttccaggcat
     2821 ggactcaaat ccaatcgcac cagcattgtc aagcgaagaa agacatcttc accggcattc
     2881 aaatcatgga gaccctgtat ctccgatgga tgaaccagca cagagtgatc aaaagacgaa
     2941 tgtacctgtg atggaacctc tggcacaatt tgcagatacc tacatcttag cacaaggtgg
     3001 agatgaactc ttcatcattg atcaacatgc tctccatgag cggattcgtt acgaacgcct
     3061 ccgtaacgaa atgacttctt gggaggcaca aaatctaatt tctcctcttg aactagaact
     3121 gagcccatca cagatacaga ttgtagaggg atatcgggaa ctattgacaa aactcggtct
     3181 tgaattcgat aaagaggccc aacgtctctt gagtgtacca agactcctca taggagatga
     3241 gcgtcttcag ggatttattc gagaccttct cacagacctt tctactactg aagggatgat
     3301 gcttgacagt gttgaacgtc tgcaagatga tattgctttc atgcgatctt gtcgtggagc
     3361 agtgaaggca aaccagcgat tagaaatcgc tgaaatgcgt cgcctcctag cagacatgag
     3421 tacaatccat aatccatggg cctgtgttca cgggcgacct actgtactta gaatgggcat
     3481 caatgagatg gacgaccatt ttgggcgtct aggataacca ttcattctgg ttttcagccg
     3541 aacaggcttt gtgtgtgcat ccttagtgag gattgatgga ggacacccct gttggatatc
     3601 gggctgtccg ctggctggcg aaggaagtta gtgaaacatg gttcagagag catggagcca
     3661 tagagaccga tcgcattcca gagggaaggg gagttctgtt cgctgcatgg catccaggtt
     3721 cgctcatcga tccattggtg atgatctcca ctttacctgg acgaattacg ttcattgcca
     3781 agcacaccct attctccgta ccaatactcg gacggatgat gaaggccgct ggagcaagac
     3841 caatatatcg atccatagac aaagataaga ttgaagggga ccagaaaaag ggtaaccagg
     3901 cagtaatcga aacggtcgca gacatccttg tagaagaggg gaattgcgta attttccccg
     3961 agggggtatc acatctttct agtcaaccag aacgggtcaa gaccggccca gcccgcatga
     4021 tattacttgc actaagacgt gcacggaaag aagggaaatc agacccctgt atcgtcccta
     4081 tcggcctaca ttactctaat cctaaccggt tcagagagag ggccttagta gaggtacatc
     4141 ccgtgatgga actaccccct ctccctgaag aagaaggagc gccaaatcca accaaggaat
     4201 ccattgagga attcggtatt gaggaagctg ctgatcgcgc atgggtcatc gctgttaccg
     4261 ataacctagg aggtgaacta caacgcacta gtcatggatt agagtcatgg gaagatcgac
     4321 gcctactctg gagaaccaga ggattactct cagttcatcg gaatcgggct attggacgaa
     4381 cagaagccgc caccttcgaa gaagcagttc ttggtgcacg gcgaatgcgt gcagcatggc
     4441 ttcatatatc tgaaaaatca cctgagaaag cacaatatct acgatcgaag gtagaggatc
     4501 acgctggatt aatgcaatcc tatggacttg aagaacacga actctatgat cggaatagga
     4561 gacctggatt ccttggcatg ttatcggcaa tgatacaatt catctggtgt tgggtctgga
     4621 tgcttggtct aatcacttgg agtgcgctaa tcggttcata ccccccatac aggattgccg
     4681 ggccaattgc aaccaaagcg gccatagacg agccttatgc cctcggtacg aagaaaattg
     4741 caattgccgt catgcttctt ccaatctggt ggttcctcat ctcattccct gtagcttggc
     4801 tcttagcatc gagttcaagt ccaatctgga atattctagg tcatggattc cttggaaccc
     4861 ttgagaattc gataacatcg ataccatggc cgttactcac attcattatc atgccactat
     4921 gggcggtcgg agcacgactc cacctccgct tatggaggcg cagtgttagg gcggctcata
     4981 ccctgaaacg ttggttcagg ctacgcagcg gatcagtccc ctggaaggaa ctctcggatg
     5041 tgcagttgaa actcgctgaa acccttgatg gcatcggtaa taacctcgta cttccaggag
     5101 acccagattg gaaag
//
LOCUS       DUKB01000121            3230 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_435416, whole genome shotgun sequence.
ACCESSION   DUKB01000121 DUKB01000000
VERSION     DUKB01000121.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3230)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3230)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3230
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_435416"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..505
                     /locus_tag="HA345_04115"
     CDS             <1..505
                     /locus_tag="HA345_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84575.1"
                     /translation="HLFGVWGTVAIPVATLQLLSLGLIYQQMDIVPDPLDSGIWIMST
                     ALLLFWYASLQLIASSMAQDLGSSVTFGVATWLFFTLPWLLVTVVIATLLGVDATDTS
                     NLEFIRFQEHADLFSPNGIYQLLLQSRLPDVAQPNVHPVHLILSTLGWTFIPMGFYLQ
                     RFRKLKP"
     gene            582..2648
                     /locus_tag="HA345_04120"
     CDS             582..2648
                     /locus_tag="HA345_04120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84576.1"
                     /translation="MVNGRQLLANAIILLMIGATTLGFLTPTNDLLNEQENTQNTEAR
                     QTADELIGDACQGLTFEDMFEYSYALFTVDINQDYTSAQVGAVAYINNSLSDQVRFDL
                     DELIGTIGAPGGANGFLSNQEENMILEVTDDCIVETNPRFGFRTGEPHRGGEGVDWKN
                     ASWINDESNPLQLEYWNLFPPHHPDNRSCPPQSRLSATGECYEVPVAPSDAATTRNCD
                     TTDITSPDECQIIVWLNGTMTWAADLTNADSFTIAMNTTNMTNAELIMNFPEKNSNDG
                     DPLRLSSFEECDGRVVQYEMHQGSTPPVGGCTGDGTITETVNENADGSLTVGVLTDFD
                     KTTWPVGQDMFADFTNQPPPPNDPPQWTAAAPADGDMIPVPAGMTVDFLSVVDQGLWL
                     TDEAGFSAIDLGCTRYSGDWTIAESTDGSWQVTTNGQQASSVECTPSDIDDNGTARAG
                     DTRMFHLFTPFSAAFSTNIEASHEFTIDPADNAPNMEVTITLFQDASVVTSTGTVADG
                     LTSIIVDTGSLSPGDVQFRVHATGLGMSDYHHTYDTILTKSSQPPSITVSSAEFDGSM
                     WQVTGVFSDPDGEDVTFTIEIDGAAGGEISTSGNTWSSQQINFDIFSEGEHTVTVTAC
                     DESNVCTTITETVDNSFLFNSGNVIDPPIIISDDPDNSGSLPAPGIAFLVVAVIGALM
                     YAGRRD"
     gene            2652..>3230
                     /locus_tag="HA345_04125"
     CDS             2652..>3230
                     /locus_tag="HA345_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84577.1"
                     /translation="MSYTAKVLRVTHEGSVLASFDGGVPRLGQRLRDGTGTTIGRVDS
                     VIGPVDDPLVNVVILDPHLEAETLIGSTLELAPRERRERRDQRQHGRSRFSRDNDRGD
                     RRFDRRNDQGRGDRRGGDRRDQNRSWGDRRGNERDSRMKPGDWMCPKCNNHNFASKTS
                     CNRTGCEEPKPNDTSGQGGNRSWSNQRGGDRRG"
BASE COUNT          855 a          820 c          778 g          777 t
ORIGIN      
        1 acatttattc ggcgtgtggg gcactgttgc gatacctgtt gccactctgc aattactctc
       61 attgggcctc atctatcaac agatggacat tgttcccgat cctctcgact ctggaatctg
      121 gatcatgagc acggctctac ttctattctg gtacgcaagt ctacaactaa tcgcatcctc
      181 aatggctcaa gacctcggat cttccgtaac ctttggagtc gctacttggc ttttcttcac
      241 cctaccatgg ttactagtga cagtggttat cgcgacactc cttggcgtgg acgcgaccga
      301 tacttcaaat cttgaattca tccgattcca agaacacgcc gatctattct cgccgaatgg
      361 aatctatcaa ctcctattac aaagccgact accagatgtg gctcaaccta atgttcatcc
      421 tgtacacctc atactgtcaa cattgggttg gacattcatc cccatgggat tctatctcca
      481 acgattccgc aaattgaagc cttgattgaa ttgtatctga tgatgcagat ggtaggacag
      541 ggtattttac cctctcagtc caacggaggt tagtgaccac catggtgaac ggacgacaac
      601 tgctcgcgaa cgcaataatt ctcctcatga ttggagcaac aacgttaggg tttctgacac
      661 ccactaatga cttgttaaac gagcaagaaa acacacaaaa tacagaggct cgacagaccg
      721 ctgacgaatt gattggtgac gcatgtcaag gcttgacctt cgaagacatg ttcgagtatt
      781 cttatgctct gttcactgtt gacatcaacc aggattacac tagtgcccag gttggggcgg
      841 tcgcatacat caataacagt ctatctgacc aagtacgctt cgatcttgac gaactaattg
      901 gtacgattgg agctccagga ggagctaacg gattcctctc caaccaagaa gaaaatatga
      961 ttctagaggt tacagacgac tgtatcgtcg aaacaaaccc ccgattcgga ttccgtactg
     1021 gtgaacccca tcgaggagga gaaggtgtcg attggaagaa tgcgtcatgg ataaacgacg
     1081 agagtaaccc gctccagttg gaatactgga acctcttccc tcctcaccac cctgacaaca
     1141 ggagttgccc gcctcagagt cgcctctctg caactggtga atgctacgag gtacccgttg
     1201 caccctccga tgctgccaca acgcgtaact gtgacactac ggatatcacc tcgcccgatg
     1261 aatgtcagat tattgtctgg ctcaatggaa ccatgacttg ggcggcggat ttgaccaatg
     1321 ctgattcatt taccattgca atgaacacca ccaatatgac aaatgctgaa ttgattatga
     1381 atttccccga gaagaattcc aacgacggag acccactacg tctttcctca ttcgaggaat
     1441 gtgatgggcg tgtagttcag tatgagatgc atcaggggtc cacacctcca gttggaggat
     1501 gcacaggtga tggaaccatt actgagactg tgaatgagaa cgcagatggc tccttgaccg
     1561 tgggagtcct cactgacttc gacaaaacca catggccagt gggacaagac atgttcgctg
     1621 atttcactaa ccaaccaccg cctccgaatg atccgccaca gtggactgct gcagcacccg
     1681 cggacggtga tatgattcct gttccagctg gtatgactgt agatttcctc tccgtagtgg
     1741 atcaaggact ctggctgacc gacgaggctg gtttctcagc catagacctc ggttgcacgc
     1801 gatactcagg cgactggacc attgctgaat ccactgatgg atcatggcaa gtcaccacaa
     1861 acggccaaca ggcaagttcc gttgaatgta caccatctga tatcgatgac aacggaacgg
     1921 ctcgtgcagg agatacacga atgttccacc tattcactcc attctcggcg gcgttttcga
     1981 caaacatcga agcatcacac gagtttacca tagatccagc agataatgcg ccgaacatgg
     2041 aagtcacaat cactctcttc caagatgcta gtgtggtaac atctactggt actgtcgcag
     2101 acggattgac cagtatcatt gtggatacag gttcactcag ccctggcgat gttcagttcc
     2161 gcgttcatgc aacgggctta ggtatgagtg attaccacca cacttacgac acgattctaa
     2221 cgaaatcgag tcaacccccc tctatcaccg tctctagcgc cgaattcgat ggcagcatgt
     2281 ggcaggtcac aggtgtgttc agcgatccgg atggagaaga tgtaacattc actatcgaaa
     2341 ttgatggagc agcaggtggt gaaatctcaa cgagtggtaa cacttggagt agccagcaaa
     2401 tcaactttga tattttcagt gaaggggaac acactgtcac ggtcacagca tgcgatgaat
     2461 cgaatgtatg cacaacgatt accgaaacag ttgacaactc attcctattc aattcaggga
     2521 acgtaattga cccaccaatt atcatcagtg atgatccaga taattccggt tccttgcctg
     2581 cacctggaat cgccttcctc gtagtcgctg tcatcggagc gctcatgtac gccggacgtc
     2641 gcgattgagt catgtcctac acggctaagg tcctgcgtgt gacccacgaa gggtccgttt
     2701 tggcgagttt cgatggagga gtgccccgtt tgggccaacg acttcgcgac ggaactggga
     2761 ccacgatcgg tcgcgttgac agcgttattg ggccagttga tgaccccttg gtcaatgtcg
     2821 ttattctaga cccgcatctt gaagctgaaa ctctgattgg ttcaactctt gaattagctc
     2881 caagagaacg tcgcgaacgg cgtgatcaaa gacaacatgg ccgttcacgg ttttcacgcg
     2941 ataacgatcg cggcgataga cgatttgatc gacgtaacga ccaaggtaga ggcgacagaa
     3001 gaggtggaga tcgacgtgat caaaatcgat catggggtga tagacgtgga aacgaacgag
     3061 attcgaggat gaagccgggc gattggatgt gccctaagtg caacaatcat aatttcgcaa
     3121 gtaaaaccag ttgtaatcga actggctgtg aagaacccaa accaaatgat acctctggac
     3181 agggtggaaa ccgctcgtgg agcaatcaac gtggtggaga ccgacgcggt
//
LOCUS       DUKB01000122            5547 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_440704, whole genome shotgun sequence.
ACCESSION   DUKB01000122 DUKB01000000
VERSION     DUKB01000122.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5547)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5547)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5547
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_440704"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="HA345_04130"
     CDS             complement(<1..866)
                     /locus_tag="HA345_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84578.1"
                     /translation="MDDITALGLETMEIQTVRTVTPQHFNEYWQAGILSWKSDFEMNM
                     HGPYYADLLGDRRSRQRTLMKMETSLQAAKVINARHITYHVGPYGERKAGRETNEHLA
                     NILQGVVERCRQLWGNEEDEIDYAAFPWVLENEPTLIGVETSGQQSLWGTLDEVLEVV
                     NHVEGTVPVLNMAHIHARGNGSLRTSEDFGELFDQVREQYGGKTFYCHFSGIEHRGGN
                     AMHYTQLKKSDLKFEPLAEYLAEEGDWLDVTVISDSPLLEHDAMYMLQQYDKAKQKLL
                     ERRALEERRYKLA"
     gene            1085..4654
                     /locus_tag="HA345_04135"
     CDS             1085..4654
                     /locus_tag="HA345_04135"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015083.1,HMM:NF019229.1,HMM:NF024907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84579.1"
                     /translation="MKNAQGTRPAIVLVVLLLFSPMIQAVEPGVKTDPGPDHHLLGLP
                     TDTYPIDGWGHHPNNDEYNQQNDDLIRLTTSQGDPDNAWVARADLLSPREISNIACIQ
                     NSSIPDELGISDMNWLWGQFISHDIDFTLTQNGRVDGIPERLDIVIPDGDPWMDPSGT
                     GSNLIMLFRSLYNTSNENDTQPREHPNSVTGWLDGSAVYGSTPAVATWLRTGERGHLK
                     ITENENGPLLPLADPDDDTAPGMSFVGFSASERYIAGDSRANEHAALTATHILMIREH
                     NRIADLLYTQHPDWSDEQIYQTARKYVTALIQKVTYDEYLPSMGVYLPEYQGFDSTID
                     PRVSNAFATLSFRMGHSQIGVLTERLHENRSSIPSGPIAMHDGFWNPNSLVTDGGIEP
                     IFRGLAYTTQEANDVGYIDALRNRMFGVPGKGGMDMCAIDIQRGRDHGIPDYGTYRQT
                     LGLPPVNNWSDITDNPDTIQRMEMAYSDVNLADPLMAMYAEEHPNDGILGESMHALLL
                     DQFVRMRDGDPLFYLNDPDLQSSLQEIEETTLSDIILRNSRIEAIQCDSMFAETDLAA
                     MDCINENLGDEIIPDPVVIIGENEKEFVLNAYFTEQTDRSGLNQIELGQPLQFSSYGP
                     GIAAEDCDGDGRIDLAIGAMFDQEGWETDGPPTDGRMHMYRNIGDNRFVDITEAAGLP
                     MANSTSVGLTWADYDSDGDMDLHVANFGNVTLTRNDTGAPNALYQNNGDCTFVDVALE
                     AGIDNPGHSSKGIFADFDHDGDLDLYSMNFGQVSEAQMAIKEDTNILYRNLLRESGAA
                     TFEPITIAAGNVVGGGLYPSEEGEIYTGVPTSIALTAPENPSAQMAVHSDYDSEGNGS
                     GMSWAGLFHDMDSDGWEDIFIASDFGFSPMYRGSESGIFEKVTFEDGFIYPGTGMGVH
                     AGDIEGDGDLDMCVSNYGPNFLWIQEEPRKWDEVAHMRGFSENVLVNWDCRFIDVDLD
                     GDLDLWFGVGRINPFTALNNNSLYINDGDGFFVDAIEQANLLDQGRTMGSAWADFDGD
                     GDLDLVTGDTNLGVRFFENDAAQRDGVSCVVIDPYSNGDGNIHIDGIGANVDFHLSNG
                     KVVRQAILTGAGFSGSTVSEARLGVPSDGAIDKVVIHWNDGETTTVERLTTDEPMQIA
                     YNPDPDSEQQSFLVEIILGACVLLALGILVFNARSKEDEGPPL"
     gene            4699..5418
                     /locus_tag="HA345_04140"
     CDS             4699..5418
                     /locus_tag="HA345_04140"
                     /inference="COORDINATES: protein motif:HMM:NF013119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HIH84580.1"
                     /translation="MRGDVESVISAFRSGKPVLVFDSAFREQETALLFPAATVTPADM
                     RTLRRDCGGLLFLAIGNEVGEGFGLPWLQDLHSHERLVQEHPVLSHLITNDLQYDSKS
                     AFTLSLNHRDTFTGITDRDRALTTRRFAELWVELKESNSDSELCMKALGKEFRTPGHI
                     PVCRESPGGIANRQGHTELAVAVARMAGLPPVVIGAEMLQPYGDAALPVEEAIAYGNK
                     HGIPFASGQDILEAIENGGKE"
     gene            5418..>5547
                     /locus_tag="HA345_04145"
     CDS             5418..>5547
                     /locus_tag="HA345_04145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010901547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HIH84581.1"
                     /translation="MTRVMAVGVFDLLHAGHLHYLEQAKALGDSLTVVIAHDDTVRK"
BASE COUNT         1478 a         1391 c         1354 g         1324 t
ORIGIN      
        1 gcaagcttgt agcgacgctc ctccaaggca cgacgttcga gcaacttctg cttagccttg
       61 tcatactgct gtagcatgta catcgcatca tgctcaagta atggcgaatc agagattacc
      121 gtaacatcca accaatcacc ctcttcagcg agatactcag caagaggttc gaacttcaaa
      181 tcggacttct ttagctgtgt ataatgcata gcattgccac ctcgatgttc gattccagag
      241 aagtggcagt agaacgtctt cccaccatac tgctcacgaa cctgatcgaa tagttcacca
      301 aagtcctcgg atgtcctcag tgaaccgttg ccacgtgcat ggatgtgagc catattgagc
      361 actggaacag tgccttccac gtggtttact acttcgagaa cctcatctaa ggtaccccaa
      421 agcgattgct ggccactcgt ctcaactccg attagagttg gttcgttctc caacacccat
      481 gggaatgcgg catagtcaat ctcatcctcc tcattacccc aaagctggcg gcacctctct
      541 actacgccct gaaggatgtt cgcaaggtgc tcattcgtct ctcgaccagc cttacgttca
      601 ccataagggc cgacgtggta ggtgatatgt cgagcattga tgaccttggc tgcttgaagg
      661 ctagtttcca tcttcatcag tgtacgttgg cgggaacgtc ggtctccgag tagatcagca
      721 tagtaagggc cgtgcatgtt catctcaaaa tcagatttcc aagacaaaat accagcttgc
      781 cagtattcgt tgaaatgttg tggagttacg gtgcgaaccg tctgaatctc cattgtttct
      841 aggccaagtg ccgttatgtc gtccattcct tctacaatag tacgaccttt acaggaaaga
      901 ggaactcccg ctggtccgaa tctcaatggc atggctagcg ctcccctgac ctcccgtcgc
      961 accgggtggt tgttcaaaag ggatgttacg cgaacaaaca ttgtttgaaa atataattct
     1021 agtgattttt aatcagaaat ggctgagaca tcgtcttaac ctcttgcact ctggaagtta
     1081 atacatgaag aacgcgcaag gcactaggcc agcgattgtt ctcgtggttt tactcttgtt
     1141 ctcacccatg attcaagccg ttgaaccggg tgtcaaaacc gatccaggtc ctgatcacca
     1201 tctcctaggg ctccctacag acacctatcc gattgatgga tgggggcacc atccgaacaa
     1261 tgacgaatat aatcaacaaa atgacgattt aatccgactt actacatctc aaggtgatcc
     1321 agataatgct tgggttgctc gagccgattt actaagccca agggaaatta gtaacatcgc
     1381 ttgtatccag aactcatcca ttccagatga attaggcatt tcagatatga actggctttg
     1441 gggccagttc atcagccacg atatcgactt cactctgact cagaacggac gcgtggatgg
     1501 aataccagaa cgattggaca tcgtaatccc tgatggtgac ccttggatgg acccctctgg
     1561 aacaggtagt aatctgatta tgctgttccg ttcactctac aatacgtcga atgagaatga
     1621 tacacaaccc cgtgaacacc ccaactcagt aacaggttgg ttggatggat ctgccgttta
     1681 tggatccacg ccggccgtag ccacatggtt acggactggc gaaagaggcc acctcaagat
     1741 tactgagaac gaaaacggtc ctttgctacc tctggcagat ccagatgatg ataccgcacc
     1801 aggaatgagt ttcgtaggat tctctgcatc agagcgatat atcgcaggag attcgcgggc
     1861 gaatgaacat gcagccctga ctgcaacaca tattctgatg attagagaac acaaccgaat
     1921 tgcagattta ctgtacacac aacatcctga ttggtccgat gagcagatct atcaaactgc
     1981 taggaaatat gtgactgctc tgattcaaaa agtgacttat gacgaatacc taccatcaat
     2041 gggcgtctac ttaccagaat accagggatt cgattcaaca atcgacccaa gagtctcaaa
     2101 tgcatttgca accctctctt tcagaatggg gcattctcag attggcgtgc taaccgaacg
     2161 cttgcacgag aatcgttcat cgataccttc tggacccatc gccatgcatg atggattctg
     2221 gaacccaaac tcattggtga cagatggggg catcgaaccc atcttccgcg gcctagcgta
     2281 tacaactcag gaagcgaatg atgtaggcta catcgatgcg ctcagaaata ggatgtttgg
     2341 agtccctggc aaaggaggga tggacatgtg tgcgattgac attcaacgcg ggcgtgacca
     2401 tggaattcca gattatggaa cctatcgcca aaccctcggc ctaccacctg tgaacaactg
     2461 gtcagatatc acagataacc cggataccat tcaacgaatg gaaatggcct attcagacgt
     2521 caatctcgcc gaccctctga tggcgatgta cgctgaggaa catcccaatg atgggatact
     2581 gggcgagagc atgcatgcac tcctcctaga ccagttcgtg cgaatgcgcg atggtgaccc
     2641 tctattctat ctaaacgacc cagatctaca atcctcactc caagagattg aggagacgac
     2701 actctcagac atcattctga gaaatagtcg tatagaggca atacaatgcg attcgatgtt
     2761 tgctgagacg gacctcgctg ctatggattg catcaatgag aatctcggag acgaaattat
     2821 cccggacccc gttgtcatca taggtgaaaa tgagaaagag ttcgtgctga acgcctactt
     2881 caccgaacag accgaccgct caggactaaa ccaaattgaa ctcggccagc cgttacaatt
     2941 ctcaagttat ggaccaggta ttgccgcaga ggattgcgac ggagacggac gtatcgacct
     3001 tgctatcgga gctatgttcg accaagaagg ctgggaaaca gatggccccc ctactgacgg
     3061 aaggatgcac atgtatcgga acatcggtga caatcgattc gtagatatta ctgaagcagc
     3121 aggtttgccg atggctaact caacctcagt aggcctcaca tgggcagact acgattcaga
     3181 cggcgacatg gatttgcatg tcgctaattt cggcaacgtg accttgacga gaaatgacac
     3241 gggagcgcca aatgcattgt accagaataa tggggactgt acctttgtcg acgttgcatt
     3301 ggaagccggt attgataatc cagggcattc atccaaagga atctttgctg acttcgatca
     3361 tgatggagat cttgatctat attccatgaa cttcggtcag gtctccgagg cccagatggc
     3421 catcaaggaa gacactaaca tcctctatcg taatcttctt cgagaaagcg gggcagctac
     3481 tttcgaacca attaccatcg ccgcaggaaa tgttgtaggt ggcggtctat atcctagtga
     3541 agaaggcgaa atatacactg gagtccccac ctcgattgcc cttactgccc ccgagaatcc
     3601 atccgcacag atggcagtac attcagacta tgactctgaa ggaaacggtt caggaatgtc
     3661 ttgggctgga ctctttcatg acatggattc tgatggatgg gaagacatct tcatcgcctc
     3721 tgactttggt ttctccccta tgtatagggg aagtgaatcg ggcatatttg agaaggttac
     3781 cttcgaagac ggattcatct atccaggcac tggcatggga gtccacgcag gcgacataga
     3841 gggtgacgga gatctggata tgtgcgtcag taactacggc cctaacttcc tctggattca
     3901 ggaggagcca cggaagtggg acgaagtcgc tcacatgaga ggattctcag aaaatgtcct
     3961 agtcaactgg gactgcaggt tcattgatgt cgatttagac ggagacctcg atttatggtt
     4021 cggcgtggga cggattaacc catttactgc tctcaataac aattcactat acattaacga
     4081 cggcgatgga ttcttcgtag atgccattga gcaggctaat ctactggacc aaggccgaac
     4141 catgggttct gcatgggctg attttgatgg tgatggagat cttgatctcg tcacgggaga
     4201 cacaaaccta ggagttcgct tctttgagaa cgatgcagcg cagcgtgatg gagtatcatg
     4261 cgttgtaatc gacccctatt ccaacggtga tggcaacatc cacatcgacg gtattggggc
     4321 aaatgttgac ttccacctaa gcaacggcaa agtggtccga caagcaatcc taaccggcgc
     4381 tggatttagc ggttcaacag taagtgaagc ccgacttgga gttccttccg atggagcaat
     4441 cgataaagtc gtcatccatt ggaatgacgg agagacaact accgtagaac gattgacgac
     4501 agacgaaccg atgcaaatcg cctacaaccc agacccagat agtgaacaac agtccttcct
     4561 cgtcgagata atcctaggag cctgtgtact tctcgccctc ggaatacttg ttttcaatgc
     4621 acgttcaaag gaggacgagg gaccgcccct ctgaccgaaa atgacgggta tgtgaaaccc
     4681 atacggagag tgaagaatat gcgaggcgac gtggaatcag tcatctcagc attccgaagt
     4741 ggtaagccag ttctggtatt cgattccgcc ttcagggaac aggaaacagc cctcctgttc
     4801 cccgccgcaa ccgtcacacc tgcagacatg aggactctcc gtcgagactg tggcggactg
     4861 ctattcctcg caataggtaa cgaagttggg gagggattcg gattaccatg gctccaagat
     4921 ctccacagtc acgaacgtct tgtgcaagaa catcctgttc tgagtcatct aatcacgaac
     4981 gatttgcagt acgattcaaa atcagcgttc acactcagtc tcaatcatcg tgatacgttt
     5041 accggaatca cagaccggga ccgggcgctc actacccgcc gttttgctga actctgggtt
     5101 gaactcaagg agagcaattc ggattccgaa ttatgcatga aggcacttgg taaggaattc
     5161 agaacccccg gccacatccc ggtttgccgc gagagcccag gggggatcgc gaatcgacaa
     5221 ggacacactg aacttgccgt cgctgtggca agaatggccg gcttaccccc cgtagtcata
     5281 ggcgcagaga tgcttcagcc ctacggagat gcggctttac ccgtcgagga agctatcgcc
     5341 tatggcaata agcatggtat accatttgca agtggtcaag atatccttga agcgatagag
     5401 aatgggggta aggagtgatg actcgagtga tggcagttgg cgtgtttgat cttcttcacg
     5461 caggccatct ccactatctt gagcaggcca aggctctcgg ggattccctc accgtagtca
     5521 tcgctcacga cgatactgtg cggaaaa
//
LOCUS       DUKB01000123            7003 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_54920, whole genome shotgun sequence.
ACCESSION   DUKB01000123 DUKB01000000
VERSION     DUKB01000123.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7003)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7003)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7003
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_54920"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /locus_tag="HA345_04150"
     CDS             complement(<1..554)
                     /locus_tag="HA345_04150"
                     /inference="COORDINATES: protein motif:HMM:NF014798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HIH84582.1"
                     /translation="MTGAASRDGYGAALLDLAEDDRIVVLEADLGKSTKSCLFRAEHP
                     QRAFSMGIAEQNMMLVAAGLASTGMIPFASTFAIFTERGFEQVRNGIARPGLVAHICG
                     SHGGIHTGTDGSSAQSIEDLAIYRTLPNMTVMHPCDASSTRALTKALVNHGSASYTRT
                     VRNKTRQIYTDEEAAKLKIGKFSV"
     gene            complement(551..1387)
                     /locus_tag="HA345_04155"
     CDS             complement(551..1387)
                     /locus_tag="HA345_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008730705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HIH84583.1"
                     /translation="MSDNTPEFTEKSVDELVDIARGCRREIVKMVKRANAGHPGGSLS
                     VIDLIVGLYGRTLRVSPTEPKHPGRDRLILSKGHASPAMYAALHAFGFLDETDLHSYR
                     MFNGICQGHVDSKWTPGVDFSGGSLGMGLSFGLGVAISGRLTGRDHHSWVILGDGECQ
                     EGEIWEAAMAASHHRLENVNVIVDVNGIQNDDFVDQQMVMGDLSAKWAAFGWKVRDMN
                     GHDMMEIAEAIEWSKTTVGPCVILARTTKGKGVSFMENNPSFHGKAPDDEEFKLAMEE
                     LA"
     gene            complement(1424..3646)
                     /locus_tag="HA345_04160"
     CDS             complement(1424..3646)
                     /locus_tag="HA345_04160"
                     /inference="COORDINATES: protein motif:HMM:TIGR00728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HIH84584.1"
                     /translation="MGDGRIIEFANDGSTVHELTLRALLIGIVLGALLTAANTYLGLQ
                     LGMTVSASIPAAVLSMIILRSMRLKDVSILENNLVQTMASAGESLAAGVIFTVPALLV
                     MGMEMRLLETFIIAVLGGVLGTMFTITLRRIFIVEEALPYPEGVACREVLAAGERGGS
                     GMTAIIYALGLGAMYGWVTKGFKIIGKHGEPHLSGAMDFLGTRLYIGFEMSLALVSVG
                     YIVGIRIASFIFLGGVIGFGILVPILGILQGWPVGMEPADAFMALWSQHIRFVGVGAM
                     VVGGIYTLWSMRSTIASGVSKAIKGATDDSNAVVRREDQDIDIRTTFYVAGVIAVLTF
                     LFYWYSIGSIILAFVGALFLTVAAFFFSAVAGYIAGVVGSSNSPVSGMTIATLMATSL
                     IVWVVGDLALGLETEELMYATLLIASVVAVNAAIAGDVMQDLKTGHLVGATPWKQQIA
                     EIVGVLVGAMVAPFTVVLLHRAFRITKTACYADPPALDGVIPTDPNLIAEACSGALLA
                     PQAELIGAIIQGVFGGSINLPMVTLGFIIAGLLIWKKLPVMSVAIGIYLPLQLSSSIM
                     IGGIIAAFMLGTARLRTDGDLIGEMSEEAEKEVKKTHDRGVLLSAGLIAGEALMGVVV
                     ALFIVLSDVVKPLRRPDEWFCSQTAVDSEGASYCVERSLAILPTWISALFFLWFVFVF
                     IHLVSRALPRKEEDALHGSRPPGFDMPVLDLLHDSVAIVAQGSRDFVDAVRVDDSEEG
                     "
     gene            3734..6637
                     /locus_tag="HA345_04165"
     CDS             3734..6637
                     /locus_tag="HA345_04165"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012892.1,HMM:NF012893.1,HMM:NF012905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-transporting P-type ATPase"
                     /protein_id="HIH84585.1"
                     /translation="MGEDLGYDSPPANLSNWHVMSADEALDLLDTNRDGLSDSEALRR
                     AAEIGPNKLDEETPTHWIWKLIDQYRDPMVYLLLAAAAIAFLFEPEDKGTPIFIVIAL
                     SLNGIFGYMQEAKAEKAMGSLKEMLVGSCVVLRDGKDVRVTTEELVPGDLVFLDEGMN
                     VPADVRIIESHNLAIDEATLTGESNPVAKVSSSISEDVMLADRKNMAHMGTLVSSGRG
                     CGVVVSTGMNTQLGRLAADLAEVEAPKTPLEIKLEALGRFLGYVAIFAALLIVTLSLG
                     KAYLINGMRGDELYGVLSEQFLVAVAIFVAIVPEGLPIILVITLSIGMRNMARHRAII
                     RKMKAVETLGSTTVICSDKTGTLTTGEMTARRFHFNGVSYDVSGRGFNPNEGSLHING
                     AKVSEADRAELTSLPAFRWMMGSALLAQNSNVRQVGAVWQGVGDPTDTACAVLGWKLH
                     SSVDDFRKMHPRFREFPFDRSRKRMSTIHEFEGKRRLFVKGAAGNLAKICDRTVENGE
                     IVPLTEERLQRFREANEEYAGDALRILGFATREIHEGEDIDDVEEVEKGLILLGIVGI
                     SDPPRIEVPQAIATCEEAGIRVIMITGDHKSTAEAIGAEIGIYSGDDLSVHGSELRDM
                     SDDELDALLDRVAIFSRTTPDQKLRIVDRLQKQGHVVAMTGDGDNDAPALSKSNIGIS
                     MGRGGTDVAREASDMVLQDDDFSSIVSAVDQGRRIYQNIRNFVRYQISTNVAAVTLLI
                     FTGIFFGWTGEWLILTPTQLLVINILMDGPPAVALGIEEQTKDVMKEPPRPIEETLPT
                     PPDIFLILFLGFIMVIGTASVFYFAGGDMITNAPCSPGPLGESAFGVVGDCDEEGWTH
                     HAEDRFASARTSAFAVFIFFQLMNVMNCRSNEVSAFRLGLTSNRWITVSFAISTIMLL
                     FMVQSPEFAGFRVGEMVATVPLSGIDWLVVFLVASSVFIAEELRKLFWPKPKA"
     gene            6681..>7003
                     /locus_tag="HA345_04170"
     CDS             6681..>7003
                     /locus_tag="HA345_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84586.1"
                     /translation="MLGAKGHSDWRRRFPTVVEQLGGIDDTLVIEAARDLEINGRVSN
                     DLGIKLLLEADLTDLRLLGKALKVARFEEEVYFNSNLHVNPTNICVLACRFCAFRRGR
                     KADDA"
BASE COUNT         1756 a         1652 c         1804 g         1791 t
ORIGIN      
        1 aacacagaga atttaccgat tttcaattta gcagcctcct catctgtgta gatttgcctt
       61 gtcttatttc tgacggttcg tgtgtaggat gctgaaccgt gattcaccag tgctttcgtt
      121 aatgctcggg ttgaagatgc atcacagggg tgcatcacag tcatgttagg tagggttcga
      181 tagatggcta agtcctcgat ggattgtgcc gatgaaccgt cagtaccagt atgtatccca
      241 ccatgacttc cacaaatatg agcaaccaat ccaggtcgag caatcccgtt acggacttgt
      301 tcaaaaccac gttcagtgaa aattgcgaag gtagaggcga aaggaatcat tccagtagat
      361 gccagtcctg cggcgacaag catcatattc tgttctgcaa tgcccattga gaatgcgcgt
      421 tgagggtgtt cagcacggaa aagacaagac ttggtggact tgccaagatc cgcttcaaga
      481 acgacgattc tgtcatcttc agcgagatcg aggagagcgg ctccatagcc gtcgcgactt
      541 gcagcgccgg tcatgctaat tcctccatag cgagtttgaa ttcctcatcg tcgggagctt
      601 tcccgtggaa ggatgggttg ttctccatga aactcacacc cttccccttt gtagttcgag
      661 ctaggatgac gcaaggtccg acagtggttt ttgaccactc aattgcttcc gcaatttcca
      721 tcatgtcgtg gccgttcata tcccgaacct tccatccaaa ggcagcccat tttgcggaca
      781 aatctcccat caccatttgt tgatcaacga agtcatcgtt ctgaattcca ttcacatcta
      841 caatgacgtt gacgttctct aatcgatggt gagatgcagc catcgcggct tcccaaatct
      901 ccccttcctg gcattctccg tctcccagga tgacccatga gtggtgatca cggcccgtta
      961 ggcgaccgga aattgcgacg cctagtccga aggagaggcc catgccaaga ctcccccctg
     1021 agaagtcgac accaggtgtc cacttcgaat ctacatggcc ttggcagatg ccgttgaaca
     1081 tacgataaga gtggagatct gtttcatcga gaaatccgaa ggcgtgcaac gcagcgtaca
     1141 ttgcaggaga tgcgtggcct ttggatagaa tgagtcgatc ccttccggga tgtttcggtt
     1201 cggtcggaga tacacgtaag gtacgtccat acaaccctac aatgagatcg attacggaaa
     1261 ggcttcctcc tggatgccct gcatttgccc gctttaccat cttgacaatt tctcgccgac
     1321 aaccacgtgc aatatccacc agttcatcca cggatttctc tgtgaactcc ggggtattat
     1381 cagacatgat aaggcatcat ctgaaaaggg tctttgatga ttctcatccc tcttctgaat
     1441 catctacacg cacagcatca acgaaatcgc gacttccttg ggctactatg gccacagagt
     1501 cgtgcaggag atcgaggaca ggcatgtcga atccaggtgg tcgactacca tggagagcat
     1561 cctcctcctt tcgagggaga gcacggctga ctaggtggat aaagacgaaa acaaaccata
     1621 ggaagaatag agcagatatc caagtaggca aaatcgcgag tgagcgttcg acgcagtagg
     1681 aagcaccttc gctgtcgaca gcggtctggc tacagaacca ttcatctgga cggcggagtg
     1741 gctttactac atcagagagg acgatgaaaa gagcgacaac gacacccatt agtgcctcgc
     1801 ctgcaatgag gcccgccgac agaaggacgc ctcgatcatg agttttcttg acctcttttt
     1861 ccgcttcttc tgacatctct ccaatgaggt cgccatcagt gcgcaatcgt gctgttccta
     1921 gcatgaaagc ggcgataatg ccaccaatca tgatgctcga agagagttgg aggggtaggt
     1981 agataccgat tgcgaccgac attacaggga gtttcttcca gattaacaga cctgcgatga
     2041 tgaatccgag tgtgaccatg gggagattga tactacctcc aaatacaccc tggatgattg
     2101 ccccgattag ttctgcctga ggggcaagta atgcaccact acaggcttca gcaatcaaat
     2161 ttggatcggt cggaattaca ccatcgagag caggggggtc agcgtagcat gcagttttcg
     2221 taattctgaa tgcgcggtgt agaaggacga ctgtgaaggg agcaaccatt gctccgacta
     2281 gaacgcccac aatttcggca atctgttgtt tccacggtgt agcgcctaca aggtggccgg
     2341 ttttcaggtc ctgcatcacg tctccagcta ttgctgcatt gactgcgaca actgaggcga
     2401 ttagtagagt agcatacatt agttcctcag tttctagtcc gagtgcaaga tctccaacca
     2461 cccaaacaat gagtgaggtc gccatcaggg tcgcgattgt cattccggat acaggtgagt
     2521 tggaagaacc aacaactccg gcgatgtaac ctgcaacggc actgaagaag aatgcggcga
     2581 cggtaaggaa tagagcaccc acaaaggcga gtatgatgct gccaatactg taccaataga
     2641 ataggaaggt aagtactgca attacaccag caacatagaa tgtggtacga atgtcaatat
     2701 cttggtcctc tcttcggact acggcatttg aatcgtcagt tgcgcccttg attgccttgg
     2761 acacgccaga tgcgatggtg gatctcattg accagagagt gtagattcct ccgactacca
     2821 ttgctccgac gccaacgaag cggatgtgtt gtgaccagag tgccatgaaa gcatcagctg
     2881 gttccatacc cacaggccac ccctgtagga ttccgagaat tggtacaagg atgccgaagc
     2941 cgatgacacc tccaaggaat atgaaggatg caatgcggat tccgacgatg tatccaacgg
     3001 atacgagtgc aaggctcatc tcaaatccaa tgtagaggcg tgttccgaga aaatccattg
     3061 cgccagagag gtgcggttca ccatgcttgc ctatgatttt gaatcccttc gttacccagc
     3121 catacatcgc tccgagaccg agtgcataga tgattgcagt cattccagaa ccaccgcgtt
     3181 cacctgcggc aagaacttcc ctgcaggcga caccttcggg gtatggtaga gcctcctcaa
     3241 cgatgaaaat ccgtctcaat gtgattgtga acatagtgcc taggacacca cctaggacgg
     3301 cgatgatgaa tgtctcaagt aggcgcatct ccatgcccat tactaggagt gcagggacag
     3361 tgaatatcac tccagcagcc aacgattcac cagcgcttgc catggtttgg acaagattat
     3421 tttcgagaat agagacgtcc ttgaggcgca ttgagcgcag aataatcatt gagaggacgg
     3481 cggctgggat tgaagcgcta actgtcatgc ctaactgtag accaaggtaa gtgttcgctg
     3541 cagtcaaaag agcaccgagt actatgccga taagtaatgc acgaagggtg agttcgtgaa
     3601 ccgtactccc atcattggcg aattcgatga ttcgaccgtc tcccatgttt ctccgaatcc
     3661 tatccacctc aagatatctg cgtatcattc tgatttgggg aggatgatat actccatatg
     3721 attagggcag ttaatgggcg aggatttggg gtatgattct cctcccgcca acttgtctaa
     3781 ttggcatgta atgagtgccg atgaggctct agatttactt gatacaaatc gtgatggcct
     3841 cagtgactcc gaagccctcc gaagggctgc tgaaatcggt cctaacaagc tagacgagga
     3901 aactcctact cactggatat ggaaactaat tgatcaatac cgtgatccga tggtttacct
     3961 tctccttgcc gctgctgcca tcgctttctt attcgaacct gaggacaagg gtactccgat
     4021 tttcattgta atcgctctga gccttaacgg aattttcggc tacatgcagg aggcaaaggc
     4081 cgagaaggcg atgggtagtc tgaaggagat gttagtcggt tcctgtgttg ttcttaggga
     4141 tggtaaggac gttcgtgtca cgacggaaga actcgtaccc ggagatcttg tatttcttga
     4201 tgaaggtatg aacgtccccg cggatgtacg cattattgaa tcacataatc tagctatcga
     4261 cgaagcaaca ttgactggtg agtcgaatcc tgttgcgaag gtctcatcat ccatctctga
     4321 ggatgtgatg ctagccgatc gcaaaaatat ggctcacatg ggtactttgg tatcctctgg
     4381 tcgaggttgt ggcgttgtag ttagtacagg tatgaataca caattgggcc gtctcgcggc
     4441 tgatctcgct gaggtcgaag cacctaagac tccactagaa atcaaactcg aggcacttgg
     4501 gcgattctta ggatacgtcg ctatcttcgc agcattgctt attgtcacac tgagccttgg
     4561 gaaggcttac ctgattaatg gtatgcgagg agatgaactc tacggagttc tatctgaaca
     4621 atttcttgtt gcagtagcaa tattcgtggc catcgtaccc gaggggctac caatcattct
     4681 tgttatcacc ttgtcaattg gtatgagaaa catggctagg cacagggcca ttatccgtaa
     4741 gatgaaggct gttgagacac ttggtagcac gacagtcatt tgttcggata agacaggtac
     4801 gcttactacc ggtgagatga ctgcacgtcg ttttcacttc aacggcgtct cctatgatgt
     4861 atcaggtcgt ggcttcaatc ctaatgaggg tagccttcac attaacgggg caaaggtatc
     4921 tgaggcagat cgtgccgaac tgacatctct gcctgcgttc cgatggatga tgggtagtgc
     4981 tttactcgcc cagaatagca atgtgcgaca ggtgggggcc gtttggcagg gtgtgggtga
     5041 ccctacagac actgcatgtg cagttctagg ttggaaacta cattcgtcag tagatgattt
     5101 caggaagatg catcctcgtt tccgagaatt cccattcgat cgtagtcgga agcgaatgtc
     5161 gacgattcac gaatttgagg gtaagcgtcg tctcttcgtt aagggagccg cggggaatct
     5221 cgcgaagatt tgcgatcgta cggttgagaa tggtgagata gttcctttga ctgaagagcg
     5281 attgcaacgt ttccgcgaag ctaacgagga gtatgcgggt gatgcattac gaattcttgg
     5341 tttcgcgaca cgtgagattc atgaaggcga ggatatcgat gatgtcgaag aagtcgagaa
     5401 gggccttatc cttctaggaa tagtcggtat ttccgatcct ccacgaattg aggtccccca
     5461 ggctattgcg acctgcgagg aggctgggat tcgtgtcatc atgattactg gtgatcacaa
     5521 gtcaaccgct gaagcaatag gtgcggagat cggaatctac tcaggagatg atctatccgt
     5581 tcatgggtcc gaactccgtg atatgtctga tgatgagttg gatgctcttc ttgatcgtgt
     5641 agcaatcttc tcaaggacta ctcccgatca gaaactcagg attgtcgacc gtttgcaaaa
     5701 gcaaggccat gtcgttgcaa tgactgggga cggagataat gatgcacctg ccctttcaaa
     5761 gtccaatatc ggcatctcaa tgggtagggg tggtactgat gttgctcgcg aagcctcgga
     5821 catggtactt caggacgatg acttctcatc gattgtcagt gctgtggatc aaggacgtag
     5881 aatctatcag aacattcgaa atttcgttcg ttatcagatt agtacgaatg ttgccgcagt
     5941 gacgcttctc atatttactg gaattttctt cggttggacc ggggaatggc tcattcttac
     6001 tccaactcaa ttactcgtca tcaatatcct aatggatggg cctccagcgg ttgctctagg
     6061 tattgaggaa cagacaaagg atgtgatgaa agagccaccg agacccattg aggagactct
     6121 acctacgccg cccgatatct tcctgattct tttccttgga ttcattatgg tgattggaac
     6181 tgctagtgtg ttctacttcg caggtgggga catgattacc aatgcacctt gctcgcccgg
     6241 gcctcttggt gaatcagcat tcggagtagt aggtgattgt gatgaggaag ggtggacaca
     6301 tcatgcagag gatcgtttcg catctgcaag aacgagtgcc tttgccgtat tcatcttctt
     6361 ccaattgatg aacgtcatga attgccgttc gaacgaagtg tcagcattcc gcctagggtt
     6421 gacatccaac aggtggatta cagtcagttt tgcaatttct acaatcatgc tactattcat
     6481 ggtgcagtcc ccagagttcg ctggattcag agtcggagag atggtagcga cagtaccttt
     6541 gtctggtatt gattggctgg ttgtcttctt ggtagcgtcc tctgtgttta tcgctgagga
     6601 actacgcaaa ctcttctggc caaaaccaaa ggcatgagcg aggattcatg agtcacagcc
     6661 tcgacccatg actgttacta atgctaggtg caaagggcca ctctgattgg cgtcgacgct
     6721 ttccaaccgt cgtcgagcaa ctaggcggca tcgatgatac actcgttatt gaagcggcga
     6781 gagatctgga aataaatggt cgagtaagca atgatctggg tatcaaattg cttttggagg
     6841 ctgatttgac cgaccttcga cttctgggca aggcactcaa agtggctcgc tttgaggaag
     6901 aggtatattt caattcaaat ttgcatgtca atccaactaa catctgcgtc cttgcttgcc
     6961 gtttctgtgc atttcgtaga ggtcggaagg cggatgatgc ata
//
LOCUS       DUKB01000124            3921 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_44782, whole genome shotgun sequence.
ACCESSION   DUKB01000124 DUKB01000000
VERSION     DUKB01000124.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_44782"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1626
                     /gene="acnA"
                     /locus_tag="HA345_04175"
     CDS             <1..1626
                     /gene="acnA"
                     /locus_tag="HA345_04175"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006970731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HIH84587.1"
                     /translation="YTSSITLNLEDVEPALAGPKRPQDRVDLSAMKAHWHESLTAPLG
                     HHGHGVDASKNQDTVRVSAPSGTSFELGHGDVVIAAITSCTNTSNPSVMLAAGLLARN
                     ARARGLSIKPWVKPSLAPGSRVVTEYYDAAGLTDDLAELGFNVVGYGCTTCIGNSGPL
                     DDHIEQGIDTGDLIVGSVISGNRNFEGRVHQKVKANYLASPPLVVAYALAGTLDVDFE
                     VDALGIDPSGKPVMLADIWPSDMEVQEVVASSISPEMFRERYADVMQEPRWDSVESRP
                     SPLYPWAAESTYVRLPSFFEGIEPEPAPIQPIQGAHVLLKLGDSVTTDHISPAGAFPH
                     TGPAGQYLVSEGVKPRDFNSFGSRRGNHEVMMRGTFANVRIRNQIAPDTEGGYTTHFP
                     SGEVTSVFDASMKYQEDGIPLVVLAGSQYGTGSSRDWAAKGTLLLGVKAVLATSFERI
                     HRSNLVGMGVLPLTFMDGQDAESIGLDGTEVFDIPASADLIPLSKLSVTAHRADGSTV
                     EFDTIVRLDTPVEVEYYRNGGILQTVLRNLALT"
     gene            complement(1628..2179)
                     /locus_tag="HA345_04180"
     CDS             complement(1628..2179)
                     /locus_tag="HA345_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84588.1"
                     /translation="MARIATFLLTVLIALTPLTGCTSESEEVIALPEYNLLDHTNSTV
                     EKEDYLGAPYVILFSAQWCGTPCHNNMHNLNTSVPGIEVVVVSTEYDYAPQGVSMLEW
                     IDIVNEFDDDGDDIGQTLEYTFTRVIEGDDFAEQMDVFAPGTVIFVNSVGEEIQRHEG
                     SFGPAGDEDTLALIQEYWNQIVE"
     gene            2270..3280
                     /locus_tag="HA345_04185"
     CDS             2270..3280
                     /locus_tag="HA345_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84589.1"
                     /translation="MRSTLSHLVPLILILLLIPVVSSEVGDLDEDGVPDDQDACPETF
                     GNSTLDRLGCMDTDEDGWSDPDENWTAPLGADAFPEREDAWSDTDNDGFPNQPSLSDS
                     DDCPFKSGTSRVILKGCSDIDRDHVPDLYDDDADGDGIRNEMERAASTGRFLFDPFDA
                     SSTPEDRDFDTIPDVLDDDNDNDGWPDEVEIDRGSNHEDRDITPLNQYFGIQTGFIYH
                     GGLSLDDEYDEGEIEISLSWFISVLTGELVIPIALIPIYVFLFVVRRRKYNTILTMIE
                     FENDLERLFDLEMEVNELVRARSIKVYHGLVLRNALEERENILSDRAPQIKGRYGDFE
                     SE"
     gene            complement(3286..>3921)
                     /locus_tag="HA345_04190"
     CDS             complement(3286..>3921)
                     /locus_tag="HA345_04190"
                     /inference="COORDINATES: protein motif:HMM:NF012503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84590.1"
                     /translation="HVDAAWGGSVLFSERYRSMLNGIERADSVTFDAHKMLGASMVCA
                     MFLLRDGRVLENAMTHTKKGDYLFDDPVSSQSLGRISPQCGRRADALKLWLTWLDIGS
                     DGFGKIVDSCMDVAEHLASLVEKTDEVELISHKFTNVCIRFTPKENETPEEGDTRVRK
                     ARDLLEQDATAMVIDARLDGRLVIRFAAAQPSVDKEAVARFLENLIEADQV"
BASE COUNT          961 a          914 c          961 g         1085 t
ORIGIN      
        1 tatacttcgt cgattactct caatttagag gatgttgaac ctgctctcgc cggtcccaag
       61 cgtccgcaag atcgtgttga tctttcagcg atgaaagcac actggcatga gagccttact
      121 gctcccctgg ggcatcatgg tcatggtgta gatgcatcaa agaatcagga tacagtcagg
      181 gtatctgcac catctggtac atcgtttgaa ctaggtcacg gggatgtcgt gatagctgcg
      241 atcacctcat gcacgaacac ttctaaccct agcgtcatgc tagcggcagg acttcttgcg
      301 cgaaatgcgc gtgctcgggg tctgtcaatc aagccatggg taaagcctag cctagcacct
      361 ggaagtcgtg ttgttacaga gtattacgac gccgcaggtc tgacagatga tcttgcagaa
      421 cttggattta atgtggttgg gtatgggtgc acgacttgta ttggaaattc aggcccattg
      481 gatgatcata tcgagcaagg gatcgatact ggcgacctca ttgttggttc agtcatatct
      541 gggaaccgga atttcgaggg aagggttcac cagaaggtga aggcgaacta tctcgcatct
      601 ccccctcttg ttgtcgcata cgcgctcgca ggaacgctag atgtggattt cgaggttgat
      661 gcgctaggca tagacccctc aggtaaaccc gttatgctcg ctgacatttg gccatctgac
      721 atggaggtgc aggaagttgt agcctcgtct atatctcccg agatgttccg tgagcggtat
      781 gccgatgtca tgcaggagcc tcgttgggat tctgtcgaga gccgaccgtc tccactctac
      841 ccttgggccg ccgagtcaac ttacgtccgc cttccttcat tctttgaagg catagaacct
      901 gaacccgcac caattcagcc aattcaaggt gctcatgtat tgctaaagct tggcgattct
      961 gtaaccactg atcatattag ccctgcaggt gccttccccc atactggccc agcaggtcag
     1021 tatcttgtat cggaaggcgt caaacctcgt gacttcaatt cctttggtag ccgtcgtggt
     1081 aatcacgaag ttatgatgcg aggtaccttc gcgaatgtcc gcatacgtaa ccagattgcc
     1141 cctgatacag agggaggtta caccactcat ttcccatctg gtgaagttac ttcggtcttt
     1201 gatgcgagta tgaagtacca ggaagatgga atccctctag ttgttcttgc aggttcacaa
     1261 tatggcactg gaagcagtcg tgactgggct gccaagggga cgctactact tggcgtgaag
     1321 gcagtccttg caacttcttt tgagcgcata catcgcagta atctcgttgg gatgggggtt
     1381 ctccctctca ccttcatgga tggtcaagat gcagaaagta tcggcctaga tggcacagag
     1441 gtctttgata tccctgcaag tgcagacctc atacctttga gcaagcttag tgtcacagcc
     1501 catcgcgctg atggatcaac tgtagaattc gatacgattg ttcgtctcga cactccggtc
     1561 gaggtggaat actatcgtaa tggtggaatt cttcagacag ttctgcgaaa tcttgcattg
     1621 acttgattta ttcaacgatt tgattccaat attcctgaat cagagcaagt gtgtcctcat
     1681 cacctgcagg tccgaaggag ccctcatgtc tctgaatttc ttcaccaact gaattgacga
     1741 atattacagt tccaggtgca aagacatcca tctgttctgc aaaatcatct ccttcaatta
     1801 cacgagtgaa cgtgtactca agtgtttggc caatgtcgtc gccatcatcg tcgaactcat
     1861 ttacaatatc gatccactcg agcatactca ctccctgtgg tgcataatca tactcagtgg
     1921 atacaacaac aacctcgatt ccgggtactg atgtgttgag gttgtgcata ttattgtgac
     1981 aaggcgttcc acaccattgc gcactgaaga ggataacata tggtgctccg aggtaatcct
     2041 ctttttcgac ggtggagtta gtgtggtcaa gtaggttgta ttcaggaagt gcaattactt
     2101 cttccgattc cgatgtgcaa ccagttaggg gagtaagtgc aattagtacg gtcaacaaga
     2161 aggtggctat tcgtgccatg tagatttggc ggatatgatt gattatgaat gatgtggaat
     2221 aatatgcctc tgccgttcat ttcaaaatca acgaagagat gggataagta tgcggtccac
     2281 tttgtctcat ctagttccgc taattctaat cctcttgcta atcccggttg tttcatccga
     2341 ggttggagat ttggatgaag atggtgtgcc tgatgatcag gatgcttgtc cagaaacttt
     2401 cggtaactcc acactagacc gtttagggtg tatggacact gacgaggatg gctggtcaga
     2461 tcccgatgaa aattggacag cccctttggg ggcggatgct ttccccgagc gtgaagatgc
     2521 ttggtcggat actgacaatg atggattccc caatcagccg tcgctttctg actctgacga
     2581 ttgtcctttc aaaagtggga cttcaagggt cattttgaag ggatgttccg atattgatag
     2641 agaccatgtt ccggacctgt atgatgatga tgctgatgga gatgggatcc ggaatgagat
     2701 ggaacgtgca gcatctactg gtcgtttcct tttcgatcca tttgatgcgt cttcaactcc
     2761 ggaggaccgt gatttcgaca caattccaga cgtcttagat gatgacaacg acaacgatgg
     2821 ttggcctgat gaagttgaaa tcgatcgtgg gagcaatcat gaggatcgag acattactcc
     2881 tctaaaccaa tactttggga tacaaactgg tttcatctac catggagggc tatcattaga
     2941 tgacgaatat gacgaaggag aaatcgaaat ttcactgagt tggttcatct cggtcttgac
     3001 aggcgagtta gttatcccca ttgccttgat tccgatctat gtgttcctct ttgttgtgcg
     3061 tcgaaggaag tataacacaa tccttaccat gattgagttt gagaacgact tggagcgttt
     3121 gtttgacctt gaaatggagg taaacgagct cgtccgtgct cgcagtatca aggtctacca
     3181 tggtcttgta ctaagaaacg cattagaaga gcgagagaat atactgtctg atagggctcc
     3241 tcaaattaag ggcagatatg gcgactttga atcagagtga tacaatcata cttgatcggc
     3301 ttcaattaga ttctcaagaa aacgagcgac tgcctcttta tcgacagatg gttgtgctgc
     3361 agcgaaacga atcacaagcc gtccatctaa tcgtgcatcg atgaccattg cagttgcatc
     3421 ttgttcaagc aggtcccttg ccttccttac ccgtgtatca ccctcttctg gagtttcgtt
     3481 ttctttaggt gtgaatcgga tacacacatt agtgaattta tgcgatatta gttccacttc
     3541 atccgttttt tctacaaggc tcgctaagtg ttctgcaaca tccatgcatg aatcaactat
     3601 cttaccaaat ccgtcgctac cgatgtccaa ccaagtcagc cagagtttga gggcatctgc
     3661 acgccgtcca cattgtggtg agatgcgccc gaggctctga ctactcacgg ggtcgtcgaa
     3721 cagatagtcc cccttttttg tgtgggtcat tgcattttca agaacgcgcc catcacggag
     3781 tagaaacatg gcgcaaacca tggaagcgcc aagcatctta tgggcatcaa aggttaccga
     3841 atcagctctc tctataccat tcagcatgct acgataccgc tctgaaaaga ggactgaacc
     3901 tccccatgct gcatctacgt g
//
LOCUS       DUKB01000125            2817 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_199542, whole genome shotgun sequence.
ACCESSION   DUKB01000125 DUKB01000000
VERSION     DUKB01000125.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_199542"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1379)
                     /gene="lysS"
                     /locus_tag="HA345_04195"
     CDS             complement(<1..1379)
                     /gene="lysS"
                     /locus_tag="HA345_04195"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF014031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HIH84591.1"
                     /translation="MHWADSVAQNLARRGNSHTIAAGITPSGIFHIGHIREVVTCDII
                     VRACNDAGMDARLLFIVDSIDPLRKVYPFLHSDYEDYIGHPLYKIPPPDSEGRPDLGA
                     EHNYAAHFLNPFIEALRELGVNPELSWNHEAYESGKFEDAARIFLNRRKDVAKILTEI
                     SGRPIAEGWYPYTPIGHDGSMDGLTVTGWEDPYVLWIDEEGNEGKSHIGTAEGKLPWR
                     MDWPAKWAVHGVTCEPFGKDHAASGGSYSTGRQLVDLLGAQPPIPVPYEWIQLKGMGP
                     MSSSTNVIVGPLEALDIVPPEILRFLISSNKPKRHIEFDTGTELIKKAELYDHYCRIY
                     ANQNEEKNDGDSARKVKLKEEQRGAIRFAQVIPREIPMITSHKASFSHLSMLAQIRSD
                     DESVWESMRTSGMLDGEPSESLVDRLRRMRNWIASEHFPDANRLVIQTSVTSDARDAL
                     LIPDDISQN"
     gene            complement(1389..1964)
                     /locus_tag="HA345_04200"
     CDS             complement(1389..1964)
                     /locus_tag="HA345_04200"
                     /inference="COORDINATES: protein motif:HMM:NF002620.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase-like protein"
                     /protein_id="HIH84592.1"
                     /translation="MTLSVEELRSKAAELRAKGLNTQQIADELSVSQTTVQWLSSEGV
                     ESPPDDVRIGWRTIGARATRIEAIGLILADIIDEELAGNVDTIVGISLNGIAFAQSLA
                     GHIDADFAIYRSVDEDGSGHLSNKYGNVAGRDVAVIDDVLSTGSTMRRTIEALRSEGA
                     NVCLCMVLVNKTERNEIEGVPLRGLIRAVNV"
     gene            complement(2027..2476)
                     /gene="dut"
                     /locus_tag="HA345_04205"
     CDS             complement(2027..2476)
                     /gene="dut"
                     /locus_tag="HA345_04205"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008119946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HIH84593.1"
                     /translation="MTAPIEVLFTKLHSEAEAPQRGSALAAGWDLRSIEEHTVHKGKT
                     TRIPTGLAVAIPAGFEGQVRARSSLGAKGMILPNGVGTIDADYRGEIQVLATWIGEGD
                     SFTVTAGERIAQLVVAPIPSVEFIEVKPDELGDTKRGTGGFGSTGRY"
     gene            2552..>2817
                     /locus_tag="HA345_04210"
     CDS             2552..>2817
                     /locus_tag="HA345_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994132.1"
                     /note="eIF-2B; functions in the early steps of protein
                     synthesis by forming a ternary complex with GTP and
                     initiator tRNA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HIH84594.1"
                     /translation="MADFEYESLLDRARDKIPTDISERARWTLPEPDIMIEGNQTIIR
                     NFSELISKMDRDANHVYQYLLGELGTSGTKESNRVMFKGRIPPK"
BASE COUNT          650 a          690 c          714 g          763 t
ORIGIN      
        1 tcattctggg aaatatcatc tggaataagc aaagcatccc ttgcatcaga agtaactgag
       61 gtttgaatta ccaacctgtt agcatctggg aagtgctcag atgcaatcca gtttcgcatt
      121 ctacggagcc tatcaactag gctttcagag ggttctccat ctaacatgcc ggacgtcctc
      181 atagattccc aaactgattc gtcatcagaa cgaatttgtg ctagcattga gaggtggctg
      241 aaggaggctt tgtgtgaagt gatcatcggt atctcccgag gtataacttg agcgaaacgg
      301 atagcacccc gttgttcttc tttcagcttt acttttcttg cagaatcgcc atcatttttt
      361 tcttcatttt ggttggcgta tattctgcaa taatggtcgt acaattctgc cttcttgatg
      421 agttccgtac ctgtgtcaaa ttcgatatgt cgttttggct tgttagatga gatgagaaat
      481 cgcagaatct ctggcgggac aatatccagt gcctccaagg gcccaacgat tacgtttgtt
      541 gaacttgaca tcgggcccat gcccttgagt tggatccact cgtaagggac aggtatagga
      601 ggctgtgctc caagaagatc gactagttgc cgtccggtcg agtaactccc tccggatgca
      661 gcgtgatcct ttccgaaggg ctcgcatgtg acaccatgga ctgcccactt cgctggccag
      721 tccatacgcc aaggtaattt tccttcagca gttccaatgt gagatttccc ctcgttccct
      781 tcctcatcaa tccataggac ataggggtct tcccaacctg taactgtcaa accatccatg
      841 ctaccgtcgt gacctattgg cgtgtatggg taccatcctt ctgcaattgg gcggccagag
      901 atttcggtga gtattttggc aacatccttt cgtcgattga gaaagattcg ggcagcatct
      961 tcgaattttc cggattcgta ggcttcgtgg ttccatgaaa gttcaggatt tacacctaat
     1021 tctcggagag cctcgatgaa tggattgagg aagtgtgctg catagttatg ctctgctcca
     1081 aggtccggcc gcccttctga atctggaggc ggaatcttgt agagtgggtg tccgatgtaa
     1141 tcttcatagt cggaatggag gaatggatac acctttctta gtgggtcaat tgaatcaacg
     1201 atgaacagta gacgagcatc cattccagca tcattacagg ctcgaacaat tatatcacag
     1261 gtaacgacct ctcggatatg cccgatatgg aatatgcctg acggtgtgat tcccgctgcg
     1321 attgtgtggg aatttcctcg tcgcgcaagg ttttgcgcga cactgtctgc ccagtgcatc
     1381 tccaaacctc agacgttgac ggcgcgaatg agcccgcgga gtggcacgcc ttcgatttcg
     1441 ttacgctcag tcttgttaac tagcaccata cagaggcata cattggctcc ctcggaacgg
     1501 agggcctcaa ttgtgcgtcg cattgtggat ccagtggata ggacatcatc gataacagca
     1561 acgtcacggc cggcgacatt gccatacttg tttgaaagat gtcctgaacc gtcttcatcg
     1621 acggatcgat aaattgcgaa gtcagcatcg atgtggccag cgagagattg agcgaatgcg
     1681 ataccgttca ggctgattcc aacgatggta tcgacattgc cagcaagttc ctcatcgatg
     1741 atatctgcga ggataaggcc gatggcttcg attctcgtag cacgggcgcc aatggtcctc
     1801 caaccgattc ggacgtcgtc aggaggcgat tcgacaccct cactggataa ccattggact
     1861 gtggtctgag aaacagatag ttcgtctgca atctgttggg tattgagtcc tttagcccgc
     1921 aattctgcgg ctttacttct gagttcctca acgcttagtg tcatttgaat cggtgattgg
     1981 ttccatcccc ccgatttcaa tccaccggat ggagagggca tctgaatcag tatcgtccag
     2041 tgcttccgaa tccgcccgtg ccccgttttg tgtctcccaa ttcatcaggt ttgacttcaa
     2101 tgaattctac ggatggtatc ggagcgacga cgagttgggc aattctttct ccggctgtga
     2161 ctgtgaatga gtcaccttct ccaatccatg ttgcgaggac ctgaatctca cccctatagt
     2221 ccgcgtcaat tgtaccgact ccatttggga gaatcatccc ctttgctcca agggaggaac
     2281 gtgcgcgcac ctgcccctcg aatccagcag gaatggcaac agctaatccg gtagggattc
     2341 gtgtggtttt ccctttgtgt actgtatgct cttcaatcga acgcaggtcc caacctgcag
     2401 caagagcact gcctcgctga ggtgcttctg cttcactgtg aagtttcgtg aagaggactt
     2461 cgataggggc tgtcatggag gtacactgct ggacatggtg catcaatgaa acggcggtgg
     2521 ggttgaaatg gggcagtcga gtccaatggg tatggcggat tttgaatatg agtccttgct
     2581 cgatcgggca cgggacaaga ttcctaccga tatcagtgag cgtgctcgct ggacacttcc
     2641 agagccggac attatgattg aaggaaatca gaccattatc cgcaattttt cggaacttat
     2701 ctcaaagatg gaccgtgatg ctaaccacgt ttaccaatac ttgcttggtg aacttggtac
     2761 gagcggcact aaggaatcca accgtgtgat gttcaagggg aggattcctc ccaagag
//
LOCUS       DUKB01000126            5000 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_192805, whole genome shotgun sequence.
ACCESSION   DUKB01000126 DUKB01000000
VERSION     DUKB01000126.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_192805"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>266)
                     /locus_tag="HA345_04215"
     CDS             complement(<1..>266)
                     /locus_tag="HA345_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84595.1"
                     /translation="AILLFGMSIAGCVGDEIVNPIDAPAPIEYTFTGSDADDSVSTSN
                     NDTLVELTMTEGDRDHPLTWSYLSVKISVNAGSVIECSDIADGDG"
     assembly_gap    267..649
                     /estimated_length=383
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    799..1122
                     /estimated_length=324
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1196..2299)
                     /locus_tag="HA345_04220"
     CDS             complement(1196..2299)
                     /locus_tag="HA345_04220"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012968.1,HMM:NF013200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HIH84596.1"
                     /translation="MSDWPEDATVQRFSDATSSEGVMVFAEMVDGHLLNVGRELMGPG
                     REMADHLGVTLSAILIHHSVGDAPQDLISLGADKVIVVEDARLEHYTTLPYARALSDY
                     LTNVHRPEILLMGATTTGRDLAPRVASRVDAGVTADCTKLSVGPFYHRKTKSVTTHML
                     EAHRPSFGESKLACIMSNPEQLWAPAMATARPGIFVAPASDSSRTGDVEAFSPDWQDG
                     DFSVEVMDVRRGGGERVDLGHCKIVVAGGIPCGQTGFREIHDLVDALKAQGLDAEWGA
                     SRAAVDAGHAPSTRQIGQTGQSIRPPVYIAVAISGAPQHTAGMKDSERIVAVNTDESC
                     TMVQSADAAIIGDYREVVPQLTEKVKSGFTFGL"
     gene            complement(2296..3117)
                     /locus_tag="HA345_04225"
     CDS             complement(2296..3117)
                     /locus_tag="HA345_04225"
                     /inference="COORDINATES: protein motif:HMM:NF013200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HIH84597.1"
                     /translation="MDFVVLLKQVPKPKEMRVTAEGTLDRASAPSQINQDCQHALEMA
                     LSMKDAYGGRVVVVSMGPPNFQMSHITSMERGVDETVLLSDRKLGGSDTWATGYALSG
                     TLKHIGYGSERNDWLVMGGRQTTDGDTAHVPSQVAENLGIPQVTLVEACEVVDGSAKV
                     RRIVEGGSMDLSMPLPCMLSIAPTAAPLRGRNMKAAVAVKKHVTKDQRGKDTFKEGAP
                     IFRLLSADDVELEGTKIGLAGSPTIVAAAPRVEKASRDLQLTDSDGLIGVVEGWQ"
     gene            complement(3195..3920)
                     /locus_tag="HA345_04230"
     CDS             complement(3195..3920)
                     /locus_tag="HA345_04230"
                     /inference="COORDINATES: protein motif:HMM:NF014566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HIH84598.1"
                     /translation="MDIGPKKPIWALLLLIPAPSIGVLANGVLAESDIAVYALIGLVI
                     WMICKVWIVAFPAFWHRRLDQGEFGFSYLAEGSGLRPWLEGILLGGALSAILFVTFLA
                     ARPHINLVDIGASIRAVGLDSWPKVIAAILFWVFINSVVEEYVYRWFITNQAASIIGD
                     YPIRVGSISVAAFTLHHFVAVALVAPSLWIALLAAAAVAVGGAAFSFLYHRHSSIWPA
                     WACHAILDVVVFGGVAWIALVAT"
     gene            4005..4970
                     /locus_tag="HA345_04235"
     CDS             4005..4970
                     /locus_tag="HA345_04235"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015234532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HIH84599.1"
                     /translation="MTTQAPIRVAVTGAAGNIGYALLWRIASGDCFGSNQPVILQLLE
                     IPPGMQRLEGVIMELRDSAFPLVHDIVGTDNAEVAFNEADAIFLVGSRPRTKDMDRSD
                     LVAANGPIFVGQGKAIDAVASRKVKVITVGNPCNTNALIASANAPSIPPRQFTAMTRL
                     DQNRAVGQMAERAGVPASEVQDVFIWGNHANTMYPDPSMATVDGQSATEVFDEEWLQG
                     EFLNTVSTRGKAIIMARGASSAASAASAAVDHMRDWWQGSVGRIVSVALPSEGWYGVP
                     EGIVFSFPCRCEGGEVTVVEGLTVDTFAQAKIDENVADSSENERL"
BASE COUNT         1153 a         1111 c         1019 g         1010 t
ORIGIN      
        1 ccatcgccat cagcaatatc actgcattca attactgatc ctgcatttac actaattttg
       61 actgaaagat atgaccatgt aagagggtga tctctatccc cctcagtcat tgtcaactca
      121 accaatgtat cattattaga tgtagaaact gaatcatcag catcagaacc tgtaaaggtg
      181 tactcaattg gcgcgggtgc gtctattgga ttaacaatct catcacctac acatcctgca
      241 atactcattc caaaaagaag gattgcnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnna ttctaactta
      661 cggagtataa cgttgtgaaa atatggttgg tgcagaggtc agaaagctgc gcatatgcgt
      721 aattttacta cacacctatt cgttatgcta aattggatag tcatggtggt gcagggggac
      781 atggcctgca cctcgattnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnggcctgca cctcgatttc
     1141 accctctaaa taaacaggga tcggatgctg aattggatag tcatggtcta actgctcaga
     1201 ggccaaaagt gaaccctgat tttaccttct cagtaagttg agggacaact tcgcggtagt
     1261 ctccaatgat ggctgcatct gcagactgaa ccatcgtgca tgattcatcc gtatttactg
     1321 cgacaatccg ttcactatcc ttcatcccgg cagtgtgttg aggtgcacca ctaattgcaa
     1381 cagcgatgta aactggaggg cggatactct gacctgtctg accaatctga cgcgtgcttg
     1441 gcgcatgacc tgcatcaaca gcggctcgac tcgcccccca ttctgcatcc aatccctgtg
     1501 ctttgagagc atcaacaaga tcgtgaattt cgcggaatcc agtctgtcca catgggatcc
     1561 caccggcgac aacaatcttg cagtgcccta aatcaacgcg ttcgcctccg cccctccgga
     1621 catccatcac ttcaacagag aaatctccat cctgccaatc cggagaaaag gcctcaacat
     1681 caccagttct tgaggaatcg gacgcagggg caacgaaaat acctgggcgg gctgttgcca
     1741 ttgcaggagc ccacaactgt tcagggttag acatgataca ggctaacttc gattcaccga
     1801 aggatggtcg atgagcctca agcatgtgtg ttgtgactga ttttgtcttg cggtggtaga
     1861 atggaccgac gcttaatttc gtgcaatcgg cagtaacacc tgcatcgaca cgacttgcaa
     1921 cccgtggagc aagatcgcga ccagtcgttg tagcacccat gaggagaatc tcaggacgat
     1981 gtacatttgt cagataatct gacagggcac gcgcatatgg gagggtcgtg taatgctcta
     2041 atcgagcatc ttcaaccaca atcaccttgt ctgctccaag ggatatgaga tcctgtggag
     2101 catcacctac tgaatggtgg atgagaatag cagagagggt tacgcctaga tgatcagcca
     2161 tctcgcgccc tggccccatt agttctcggc caacattgag aagatgacca tccaccatct
     2221 cggcgaagac catgactcct tctgacgaag tagcatcact gaacctctga acagttgcgt
     2281 cctctggcca gtcactcatt gccatccctc cacgacgcca attaggccat cagaatcggt
     2341 taactgaaga tcacgagagg ctttctctac ccttggagca gcagcaacta tcgttggaga
     2401 tccagcaaga ccgattttcg tgccttcgag ttcaacatca tcggctgaaa gaagtcggaa
     2461 tattggcgca ccttccttga atgtgtcctt accacgttgg tcctttgtga catgcttctt
     2521 gactgcaact gctgccttca tgttacggcc acgaagagga gcggctgtcg gtgcaatgga
     2581 aagcatacaa ggtagcggca tactgagatc catactacca ccttcgacga ttcgacggac
     2641 ctttgccgaa ccatccacaa cctcacaggc ctctacaaga gttacctgag gtatgccaag
     2701 gttttctgcg acttgacttg gtacgtgtgc agtatctccg tcggtagtct gacggccacc
     2761 catgacaagc caatcattac gctctgatcc gtaaccaata tgcttgagcg ttccagaaag
     2821 agcgtagcct gtagcccagg tatcagaacc accgagtttt cgatcagaga gaaggactgt
     2881 ttcatccact ccgcgctcca tcgaggtaat gtgagacatc tggaaattcg gaggacccat
     2941 agagacgacc actacgcggc caccataggc gtccttcatc gagagagcca tctcaagagc
     3001 atgctgacag tcctgattga tctgacttgg agcggatgca cggtccaatg tgccttcagc
     3061 ggttacacgc atctccttcg gcttgggaac ctgcttcaac agcacaacaa aatccatcat
     3121 caacacttcc caatcggaat atttgcagcc atctgaaacc ggcatttgaa ccctatgtat
     3181 tcagaattct tggctcatgt cgcgacaaga gcaatccatg caacgccccc aaataccacc
     3241 acatcgagaa tcgcgtgaca cgcccatgct ggccaaatgg aactgtggcg atgataaagg
     3301 aaggaaaagg cagcaccccc tacagcgact gcagcggcag caagcaaggc tatccacaat
     3361 gatggagcaa cgagggccac tgccacaaaa tgatgaagtg tgaacgcagc aactgaaatc
     3421 gacccaacgc gaattggata atcccctatg attgaagccg cctgatttgt gataaaccaa
     3481 cgatacacat actcctcaac aacgctattg atgaagaccc agaacaggat ggctgcaatc
     3541 actttaggcc aagaatcgag gcctactgct cgaatagatg caccaatatc tacgagattg
     3601 atatgaggcc gtgctgcaag gaaggttacg aagagtatgg ctgaaagtgc acctccaagt
     3661 agaatccctt ccaaccatgg ccgtaggcct gaaccctcag caagatatga gaatccaaat
     3721 tcaccctgat ctaatcgtcg atgccagaat gcagggaatg ctacaatcca taccttgcaa
     3781 atcatccaga tgacaagccc aatcagagca tatacggcaa tatcagattc tgcaaggact
     3841 ccatttgcaa ggacacctat tgatggagca ggaattagga gtaataatgc ccatatcggc
     3901 tttttcggac cgatatccac attcctcctg atacccagag ccctttcaac aatccgtatt
     3961 acgatggggc aatcgtcata gacggaacct cagcattcgc gggcatgaca actcaagcac
     4021 ccatacgagt tgccgttact ggagcggcag gaaatattgg atatgcctta ttgtggcgaa
     4081 tcgcaagtgg tgattgcttt ggatctaatc agccagtaat tctccagtta ctggagatac
     4141 ctcctgggat gcagcgcctc gagggcgtaa tcatggaact aagggactct gcattcccac
     4201 tagtgcacga catcgtaggc acggataacg cagaagttgc attcaacgaa gctgatgcaa
     4261 tcttccttgt tggatcacgc ccgagaacta aggatatgga tcgatccgat cttgtcgctg
     4321 ccaatggacc tatcttcgta ggtcagggca aggcaattga tgctgtagct tctcgcaagg
     4381 tgaaggtgat tactgttggc aacccgtgta ataccaatgc actaatcgct tctgcaaatg
     4441 caccaagcat ccctcctcga cagttcacag ccatgactcg cctcgatcaa aatcgcgcgg
     4501 tgggacaaat ggcagaacgt gccggtgttc cagcctcaga agttcaagac gtattcattt
     4561 ggggaaatca tgccaatacg atgtaccctg acccctcgat ggcgacagtt gatggtcaat
     4621 cagcgactga agtattcgat gaagaatggc ttcagggtga attcctcaat actgtctcga
     4681 cacgtggaaa ggcgattatc atggctcgtg gtgcatcttc cgctgcatct gctgcttcgg
     4741 ctgctgtgga ccatatgcgc gattggtggc aaggatctgt cgggcgaatc gtttctgtcg
     4801 cacttccttc agaaggttgg tatggagtac ctgaagggat cgtctttagt ttcccatgtc
     4861 gatgtgaagg tggagaggta actgtagtgg aaggcctcac cgttgacaca ttcgcacagg
     4921 cgaaaatcga tgaaaatgta gcggactcct cggagaacga gaggctgtaa gtgacctttt
     4981 gtaggcacca gaccaatttg
//
LOCUS       DUKB01000127            8527 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_25741, whole genome shotgun sequence.
ACCESSION   DUKB01000127 DUKB01000000
VERSION     DUKB01000127.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8527)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8527)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8527
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_25741"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..442)
                     /locus_tag="HA345_04240"
     CDS             complement(<1..442)
                     /locus_tag="HA345_04240"
                     /inference="COORDINATES: protein motif:HMM:NF013884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HIH84600.1"
                     /translation="MIQNPQSTMLTNHVQSITQSIPSEEIIQKPIRRHDLDWLRVILF
                     ALLIWFHYSAFSLGQIEASAWDLPLFFIIGVMHQWRLAALFLISGMGTAFALKRRTGR
                     TYLKERVTRLGIPLLFGVYILFFGIFEPISSTIRLFTIFPGSEDM"
     gene            complement(439..1551)
                     /locus_tag="HA345_04245"
     CDS             complement(439..1551)
                     /locus_tag="HA345_04245"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012780.1,HMM:NF013741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF21 domain-containing protein"
                     /protein_id="HIH84601.1"
                     /translation="MDVHTLVGQTSVAGEGDYTLLILYATLALGASFLCSVLEAVLLS
                     TSISHVKVLEQKGSRVAHLWSRFKDEPERPLTAILTLNTIAHTVGALGVGAEVAAMVE
                     GTESEAMVMAVASAVLTLGILVLSEIIPKTLGALYWKNLSVFSAYTLRGLILILLPIV
                     IPMEWMRNLFPAKSESAVTRDELAAMVEVAEDERVAETDEEKAIRNLLSLRDQNVTSV
                     MTPRTVMSFVLVDDTVQAAMDKNPVMVHGRLPVFDGEIDQPVGLVLRSEIYRKAAADE
                     HQITMSSLMRDIVRVREETNLDDLLDIFLSRKEQLALVQDEFGATLGLVTMEDVIETI
                     LGVEIVDEKDIEGIEEGVTGEDLRKFAIERRQEESE"
     gene            1704..3959
                     /gene="metG"
                     /locus_tag="HA345_04250"
     CDS             1704..3959
                     /gene="metG"
                     /locus_tag="HA345_04250"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: protein motif:HMM:NF001100.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HIH84602.1"
                     /translation="MTGEHVLVCVAWPYANGPLHLGHVAGCYLPPDITARFERARGNS
                     VLMVSGSDEHGTPITVTAEMEGVDPQDIVDRYHAINKQALLDLGCVWEPNIDSRGTEY
                     GGALFNRTSDSSHIKRVQENFASLLDAGLFEKRTMDQYYEVRPDGKGRFLPDRYVEGT
                     CPNCGDNDARGDQCDACGTTYESSDLENPRSKMNPDAAIEIRQTQHMFYRLDLFQNTL
                     EEHAESRWPVWKNNVRAMTKQWLDMGLRPRAVTRDLEWGVPVPIEDEEFDGKCVYVWF
                     EAVQGYLTCAQIWSERYGQNHPDGVESWKRWWCVDEEGNAPRHLYFLGKDNIPFHTVI
                     WPALIMGLNMAKNGKDSAQLPGPGDLHLEDNVPAMEYLMLAGGQFSKSRKHAIWLPSF
                     LEKHDPDTLRYVLTINMPEAHDTDFNWSDFVEKINTELIAAYGNFVHRIMTLAARLPS
                     EGHSPLLPFDDVANNREHAEKLEDFHSSITDSLERHRYKEALRTVMSAAQYGNQMIQA
                     AAPWAHLSEDGDEVERQTSLSTLAFGWRIARFLSIVTQPFLPFSAQRLWVMLGQDGDV
                     ASSHWDNAIDWSVPMTWTGEAAKPLFQRLDLDEILAQEGVVAEEHVDESGPSTHSVKG
                     SSRPKKNGSAMSDEPEGVKFIEFDQFMAVDIRIGRIDSVEDHPDADKLYVVHIDDGSE
                     GGRTVCAGLMEFYQPEQMTGLHVAFVANLKPRKLRGVMSEGMMLAADDGEGGVCLLTV
                     DSKMAPGSEVR"
     gene            complement(4023..4559)
                     /locus_tag="HA345_04255"
     CDS             complement(4023..4559)
                     /locus_tag="HA345_04255"
                     /inference="COORDINATES: protein motif:HMM:NF002621.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF367 family protein"
                     /protein_id="HIH84603.1"
                     /translation="MVEDVPMHIIHLDQDDPKKCTARAMHRIGEAILHHDVRGAPRRG
                     FLLDPSAGIVLGPDDRTMIDRGAAIVGLDCSWKHLDTSMASILNNTRLEPRTLPLALP
                     ANPVSWGKPGRLSTAEAMALCAAIMGRMNQAERMLRPFRFGEEFLELNAEPIAAYQEC
                     SNNAEVVETQWSFFDRPE"
     gene            complement(4565..4975)
                     /locus_tag="HA345_04260"
     CDS             complement(4565..4975)
                     /locus_tag="HA345_04260"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HIH84604.1"
                     /translation="MKAAGLRPDLSSTGASPSDQVRTFGGYGGLGKAGKDIMVRGEKE
                     LADDWSKRVVDARRNRNIDQRGLARLISERVNVIQRIEKGQTVSDQIIKKLERALDIE
                     LMIEREPSETRTLGSKSGRSMTLGDYLQDALRKE"
     gene            5179..6402
                     /gene="pan"
                     /locus_tag="HA345_04265"
     CDS             5179..6402
                     /gene="pan"
                     /locus_tag="HA345_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome-activating nucleotidase"
                     /protein_id="HIH84605.1"
                     /translation="MAESGAERPGDDDKDIIQRPDLTDVDTEVRNLREHAQQLLVDKT
                     YLENEVGQLKKRSARLEEELRHLRSPPFIIGNVQDILDDERAIVRSSNGTVFLVSRNL
                     RLSEEELKPGTRVALNQDSLSIIDVLTDAHDPLVAAAEIIDAPEVLYSDLGGLDDQIE
                     RLKDAIELPLMQPEAFTRFGISPPKGVLLCGPPGTGKTMLAKAVANQTKATFLGMVGS
                     ELAQKYIGEGGRLVRELFDLARQRAPSIIFIDEIDAIGAKRLDAATSGDREVQRTLMQ
                     LLAEMDGFSEVNEVKIIAATNRPELLDEALLRPGRFDRIIEIPLPDEEGRKAILALHL
                     GKMPLDKKVKVSNVIDQTDGFSGAEIKALCIEAGIRAIKDERKNVIPDDISEAVDVVR
                     KNRNKPKDTDLVHYG"
     gene            6441..7472
                     /gene="ftcD"
                     /locus_tag="HA345_04270"
     CDS             6441..7472
                     /gene="ftcD"
                     /locus_tag="HA345_04270"
                     /EC_number="2.1.2.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR02024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate formimidoyltransferase"
                     /protein_id="HIH84606.1"
                     /translation="MSEPLVACIPNISEGQDASIIDAICDAASGIDGCALIGSEPDPD
                     YNRTVITLAGRPDSVREAAFRLIAAAAELIDMRVHTGNHPRMGAVDVCPFVPIKNADA
                     ALCEELAASLGSKVDAELSLPVFYYGSAASHPDRTALSALRRGEYESLEERMTGEVEA
                     SITRDPDYGSGWNVRHARFGAVAIGVRPILVAYNVNLAESDAAVAKKVGTIVRSSGRL
                     IRNGDERMRVSGMLEKVQGMGVPLEAHGISQVSMNLQDVGVTDMHQAFEAVKSLASDH
                     GVDVDGSELVGLAPLSSFLAAGRWYSPNEAEEAALIEAAVQGLGLDRLGLFNPNERII
                     EYAVEAALQ"
     gene            7469..8101
                     /locus_tag="HA345_04275"
     CDS             7469..8101
                     /locus_tag="HA345_04275"
                     /inference="COORDINATES: protein motif:HMM:NF016825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclodeaminase/cyclohydrolase family protein"
                     /protein_id="HIH84607.1"
                     /translation="MTSFKDSTLSEFALELASDAPTPGGGSASGVALSQAGALAVMVA
                     DLTIGRERYSDGHNAANEAKSVGLQAMLHGHDLADRDASGYDAVVAAFKLSKDTDDEK
                     AIRREAIASASIAAAGPPMEIAELALSLLETLPELARVGNQNAITDVGVSSLLASAAC
                     RGGLFNAQINVVGDDSEGAQEMKSRIEEIRSACSNHSRAVMGLVNKAIEG"
     gene            8135..>8527
                     /locus_tag="HA345_04280"
     CDS             8135..>8527
                     /locus_tag="HA345_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004348851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HIH84608.1"
                     /translation="MHVDLSSLAEGIPKHLPPLAILDETVDHAPTRRSILDSAEEKLA
                     IRNALRYFPSEWHPTLAPEFLEELRTFGRIYMHRFRPLDVPMRAHPIDLYPARSSHAA
                     AIMHMIQNNLDPAVAQFPHELITYGGNGA"
BASE COUNT         2074 a         2036 c         2254 g         2163 t
ORIGIN      
        1 gcatgtcttc actgccaggg aatattgtga acaatcgaat ggttgagctt atgggttcga
       61 agattccgaa gaacagaatg tagaccccga acagaagagg tattccgagt ctagttactc
      121 tctccttcag ataggtcctc ccggttcttc gtttcaaggc gaaggctgta cccatcccgg
      181 atatgaggaa tagtgcggct aatctccatt gatgcattac gccaatgatg aagaagagtg
      241 gcaaatccca tgcactagct tcaatttgac caagtgagaa agccgagtaa tgaaaccata
      301 ttagaagcgc aaagagaatt acgcgtaacc agtcaagatc atggcgacgg ataggcttct
      361 gtattatttc ttcagacggg atggattggg ttatggattg aacatgattc gtgagcatcg
      421 tcgattgggg attctgaatc attcagattc ctcttgacga cgttcgatag cgaacttacg
      481 taggtcttct ccagtaacac cttcttcgat accttcgatg tccttttcat ccacaatctc
      541 gacacctaga attgtctcaa tcacatcctc catcgtgact aatccaagtg tcgctccaaa
      601 ttcgtcttgc acaagagcca actgttcctt gcgagagagg aagatatcga gtagatcatc
      661 gaggtttgtc tcctcacgta cgcggacgat atctcgcatt aatgatgaca tcgtgatttg
      721 atgctcatct gcggcggctt tacgatatat ctcggaccgg agtacgagtc caactggttg
      781 atcgatttct ccatcgaata cagggaggcg accatgaacc atgactggat ttttgtccat
      841 agcggcctga acggtatcat ctacaagcac gaaggacatt acagtccgag gcgtcatcac
      901 agaggtgacg ttttggtcac gaaggctcag caagtttctg attgccttct cctcgtctgt
      961 ctcggcgaca cgttcatcct ctgcaacctc aaccatggcg gccagttcat ctcgagttac
     1021 tgcactttct gacttcgcag ggaataggtt tctcatccac tccatcggga ttacgatagg
     1081 gagtagaatc aggattaggc cgcgcagagt gtaggctgaa aagacactga gattcttcca
     1141 atacaatgcc cctagtgtct tcgggattat ttcggatagg actaggatgc ctagagtcag
     1201 cacagcggat gctaccgcca ttaccattgc ttcagattca gtaccctcga ccattgctgc
     1261 cacttcagca ccaacgccga gagctccaac tgtatgcgcg atggtgttga gagtaaggat
     1321 cgcagttaga ggccgttctg gttcgtcttt gaatcgtgac caaagatgtg cgactcggct
     1381 gcctttctgt tcaagtacct tgacgtgtga aatcgaagtg ctgagtagca ctgcttcaag
     1441 gacactacaa aggaaggaag ctccgagagc cagtgtagca tacagtatga gcaatgtgta
     1501 atcgccttcg cctgctacgg aggtttggcc aaccaaggta tggacatcca cttaggactc
     1561 actccggatg tgtaactgga ccagattggt ttgaggtcct agtcatgtgc atctctctca
     1621 agtgcttcta ggtctaaagg gttcgtgaag tgagagtcat agttgaacgc cacattgaat
     1681 tgcgagtcag accagcgcag agcatgaccg gggagcacgt gctagtatgc gtagcctggc
     1741 catatgccaa cgggccgctt catcttggcc atgttgcagg ctgctatctt cctccagata
     1801 ttaccgctcg atttgagcgt gcaagaggca acagtgtcct gatggtatct ggttcagatg
     1861 agcacgggac accaatcaca gtcacagctg agatggaagg tgttgatccg caggacatcg
     1921 tggatcgata tcacgccatc aacaaacaag ccctgttgga tcttggatgt gtctgggaac
     1981 ctaacatcga ttcgcgtgga acggaatatg gtggtgcgct gttcaaccgg acatccgatt
     2041 catctcacat caagcgggtc caagagaact ttgcatcgct tctcgatgca gggctctttg
     2101 agaagcggac gatggaccag tactatgagg ttcgaccaga tggcaaaggt cgtttcctcc
     2161 cggatcgcta tgttgagggc acttgtccga attgcggcga caatgatgct cgtggcgatc
     2221 aatgcgatgc ttgtggaacg acttacgaat cctctgatct tgagaatccg cgatcaaaga
     2281 tgaatccaga tgctgccatc gaaatacggc aaacacagca tatgttctac cgtctagatt
     2341 tgttccagaa taccttagag gagcatgcgg aatcccgttg gccggtctgg aagaacaacg
     2401 tgcgtgctat gaccaaacaa tggttggaca tgggtcttcg gcctagggcc gtgactcgtg
     2461 accttgaatg gggagttcca gtcccaatcg aggatgagga gtttgatgga aaatgtgttt
     2521 atgtctggtt tgaagcagtt cagggatact tgacatgtgc tcagatttgg tcagaacgtt
     2581 atggtcagaa tcatccagat ggtgtcgaat cttggaagcg ttggtggtgt gtcgatgaag
     2641 aaggtaatgc ccctcgtcac ctctatttcc ttggcaagga caacattccc ttccatacgg
     2701 tgatttggcc agctctcatc atgggtctca acatggcaaa gaatggaaag gattctgcac
     2761 aacttccagg tcccggagac ctccatcttg aggataatgt tccagccatg gagtatctga
     2821 tgctcgcagg tgggcagttc agtaaatctc gtaagcatgc aatctggcta ccctcgtttc
     2881 ttgagaaaca cgatccagat actttgagat atgttctgac aatcaacatg cctgaagccc
     2941 atgatactga tttcaattgg agcgattttg ttgagaagat caatactgaa ctaatcgctg
     3001 cgtatgggaa ctttgtccac cgaatcatga ctctcgcagc taggctgcca tccgaaggtc
     3061 actcaccatt actccccttc gatgatgtcg caaacaatcg ggagcatgcg gagaagctcg
     3121 aagatttcca ttcgtcgatt acggattcat tggaacgcca ccggtacaag gaggcccttc
     3181 gtacagtaat gtccgctgct cagtatggga atcagatgat tcaagcagca gctccatggg
     3241 ctcatctatc ggaggacgga gatgaggtgg agagacaaac ctccctttcg acccttgcct
     3301 ttggttggcg catcgcccgt ttcctgtcca ttgtcactca acctttcctt ccattttctg
     3361 ctcagaggct atgggtgatg ctagggcagg acggtgatgt ggcatcatcc cattgggaca
     3421 atgccatcga ttggtcagtt ccaatgacgt ggacagggga ggcggccaag cctctattcc
     3481 agcgtcttga ccttgatgag atactcgctc aagaaggggt agttgcagag gaacacgtgg
     3541 acgaatcagg accatctacc catagcgtca agggcagtag ccgtccaaag aagaacggta
     3601 gtgccatgtc tgacgagccc gagggtgtga agttcatcga gtttgaccag tttatggcag
     3661 tggatatccg gattggtagg atcgactcag tcgaggacca tcctgatgct gacaagctct
     3721 acgttgtcca catagatgac ggcagtgaag ggggtcgtac agtatgtgca gggctcatgg
     3781 aattctatca gcctgagcag atgactggac ttcacgtcgc cttcgtcgcg aacctgaaac
     3841 ctcgaaagtt acgtggagtc atgtctgagg ggatgatgct cgctgctgat gatggtgagg
     3901 gtggtgtttg tcttctcacc gtggattcaa agatggctcc aggttcagaa gtccgttgag
     3961 attctgaagt atacctgact aatttcattc tctcaggtag cgaatattca ttgttcacag
     4021 gattactcag gccgatcaaa gaacgaccac tgggtttcca caacctcagc attgttcgag
     4081 cattcctgat atgctgcgat gggttcagca ttgagttcaa gaaattcctc gccaaatcga
     4141 aagggtcgta acatgcgttc tgcttgattc atacgtccca taattgcggc acagagagcc
     4201 atcgcctcag cagtagatag gcggcctggc ttcccccatg ataccgggtt agcagggagt
     4261 gctaatggaa gagttcgtgg ttctaatctg gtgttgttga gaattgaggc catcgaagta
     4321 tcgaggtgtt tccaactgca atcaaggcca acgatggcag cccctctgtc aatcattgtc
     4381 cggtcatccg ggcctaggac gattccggca gatgggtcta gtaggaatcc ccgtcgaggt
     4441 gcccctcgaa catcatggtg gagaattgct tccccgatac gatgcatcgc acgagcagta
     4501 cacttcttcg ggtcatcttg atcgagatgg ataatgtgca tgggcacgtc ttcgaccatt
     4561 caattcactc ctttcggagc gcgtcctgaa gatagtctcc aagggtcatc gatcgacctg
     4621 attttgatcc cagcgttcta gtctcggaag gttctctctc aatcatgagt tcgatatcga
     4681 gtgcgcgctc aagtttcttg ataatctgat cactaacggt ctgtcccttc tctatacgtt
     4741 gaatcacatt gaccctttca gaaataagtc gtgcgagacc acgctggtcg atgtttcgat
     4801 tacgtctggc atcgacgaca cgctttgacc aatcgtcggc gagctctttc tcaccgcgaa
     4861 ccatgatgtc cttgcctgct ttaccgagcc caccgtatcc tccgaaggtt cgtacttgat
     4921 ctgacgggct cgctcctgta ctggagagat caggtcgcaa gcctgcagct ttcatgcagc
     4981 ggtcgcaggc atttacagtt cgcccgccgg aggtcgaacg acgagttgat actcgattag
     5041 aaccgcaaat ctcgcaacta accatcttcg tcgatgggtt ccagtatcgc ctctcctttg
     5101 aaccaatcca tgagcccaat gagtgatgct gacattccgt ggttcaattc aaatagcgtc
     5161 ggtgaggacc caagagacat ggcggagagc ggcgcggagc gtcctggcga cgatgacaag
     5221 gacatcattc aacgcccaga tctcaccgat gtcgatacgg aggtccggaa tcttcgggag
     5281 catgctcaac aacttctggt tgacaagaca tatcttgaga atgaggttgg acaactcaag
     5341 aagcgttccg caagattaga agaggaatta cgccaccttc gtagtcctcc gttcatcatt
     5401 ggtaatgtcc aggatattct cgatgatgag cgtgcgattg ttcgctcatc gaatggaaca
     5461 gtgttccttg tttcgcgaaa tctccgtctc agcgaggagg agttgaagcc aggaacaagg
     5521 gttgcgctta atcaggatag tttgtctatt atcgatgtat tgacggatgc tcacgaccca
     5581 ttggtcgcag ctgctgagat tattgatgca cctgaggttc tgtactctga tttgggaggt
     5641 cttgacgatc agattgaacg tctcaaagac gcaattgaat taccattgat gcaacccgag
     5701 gccttcacaa gattcggtat atcgcctcca aagggtgtcc ttctctgtgg tccacctgga
     5761 actgggaaga ccatgcttgc gaaggctgtt gcaaatcaga ccaaggcaac tttcctaggt
     5821 atggttggta gtgagttggc tcagaagtac atcggtgaag gcggtcggct tgttcgcgaa
     5881 ttgtttgatc tcgcacgtca acgtgcaccg tcaatcatct tcattgatga gattgatgcc
     5941 atcggtgcga agcgactcga tgcagccact agtggcgatc gagaagtcca gaggacccta
     6001 atgcaacttc ttgctgagat ggatggcttc tctgaggtca atgaggtcaa gatcatcgca
     6061 gcaacgaatc ggccggaact cctcgatgag gcacttctcc gaccaggccg attcgatcgg
     6121 attatcgaga ttccacttcc agatgaagag ggtcgtaagg caatcttagc tcttcatctt
     6181 ggaaagatgc ctttggacaa gaaggtcaag gtgtctaatg tgattgatca gaccgatggt
     6241 ttcagtggtg ctgaaatcaa ggcgttgtgt attgaagccg gcattcgagc aatcaaggat
     6301 gaacgtaaga acgtcattcc agatgatata tcggaagcgg ttgatgtcgt tcgtaagaac
     6361 cggaataagc cgaaggatac ggacttagtg cactacggtt aacggtctga ttcaagggct
     6421 tcatggcgta cggagtgccc atgagcgagc cactggtagc atgcatcccc aacatctccg
     6481 aaggtcaaga cgcatctatc atagatgcga tatgcgacgc tgcctccggt atcgatgggt
     6541 gtgcgctcat cggatctgaa cccgatcctg actacaatcg tacagtcatc acactcgcag
     6601 ggcgtcccga cagtgttcgt gaagccgcat tccgtctaat cgccgccgcc gccgaactaa
     6661 tcgatatgag ggtgcacact ggaaaccatc cgcggatggg tgcagtggat gtctgtccat
     6721 ttgttccaat caagaatgct gatgcggctc tttgtgagga attagctgct tcccttggtt
     6781 caaaggtgga tgcagaactc agtttaccag ttttctacta tggtagtgct gccagtcatc
     6841 cagataggac ggctttgagc gcgctaagac ggggtgaata tgaatcactc gaagagagaa
     6901 tgactggcga agtagaggct tctatcacac gtgatccgga ctacgggagc ggatggaatg
     6961 tgcgtcatgc acgtttcggc gcagttgcaa ttggcgttcg ccccattttg gttgcctaca
     7021 acgtcaacct tgctgaatct gatgcggctg ttgcaaagaa ggtaggtaca attgttcgat
     7081 caagtggtcg tttaattcgc aatggagacg aacgcatgag ggtaagtggt atgttggaaa
     7141 aagtgcaggg tatgggtgtc cctttggagg ctcacggcat ttcgcaggta tcgatgaatc
     7201 tccaagatgt gggggtcaca gacatgcatc aggcatttga ggcagtgaag tcgctggcct
     7261 cggatcatgg cgtagatgtg gatggttcgg aattggttgg acttgctccc ctctcaagtt
     7321 ttcttgctgc agggcgatgg tattccccca acgaggcgga ggaggcggcg ctcatagaag
     7381 cggcggtgca agggttgggt ttggatagac tcggtttgtt taatccgaat gaacgaatca
     7441 tcgaatatgc agtggaggcg gcactccaat gacttcgttc aaggattcaa cattgtcaga
     7501 attcgcactc gaactcgcgt cggatgcccc cactccggga ggaggttccg cctccggagt
     7561 cgcactctct caagcaggtg ctctcgcggt aatggtcgct gatctgacta ttggtcgtga
     7621 acgatattcg gatggccata atgctgcgaa tgaagcaaag agcgtcggac tacaagcgat
     7681 gttgcatggc catgatttag ccgacagaga tgcttctgga tacgatgctg tagtggctgc
     7741 gttcaaactc tcgaaggata cagatgacga gaaagcgata cggagagaag caatcgcttc
     7801 tgctagtatc gccgcagctg ggcccccaat ggagattgct gaacttgcgc tcagtcttct
     7861 tgagacatta cctgaactcg ctcgcgtggg gaatcagaat gctatcactg atgtcggtgt
     7921 ttcatctcta ctagccagtg cagcatgtcg tgggggtttg ttcaatgcac aaatcaatgt
     7981 ggttggagac gattcagagg gggctcagga gatgaagtcc cgtattgaag agattcgaag
     8041 tgcatgcagc aaccattctc gagccgttat gggactcgtg aataaagcaa ttgagggttg
     8101 acaacctcca tatccacatg cacatgtgag tgccatgcac gtcgacctca gttcattggc
     8161 tgaggggatt cccaagcacc tcccacctct tgcaatcctc gacgaaacgg tcgatcatgc
     8221 acctacacgg cgttcaattc ttgactcggc tgaggagaaa cttgcaatcc gtaatgcatt
     8281 gcgctacttt cctagcgaat ggcacccaac tttagctcct gagttccttg aggaattgag
     8341 aacgttcggc cgtatctaca tgcatcgatt taggccactt gatgtgccaa tgcgggctca
     8401 tcctatcgac ctatatcctg cacgttcctc tcatgcagca gcaattatgc atatgattca
     8461 gaacaacctc gacccagcag ttgctcagtt cccacatgaa ttaatcacat acggtggcaa
     8521 tggtgct
//
LOCUS       DUKB01000128            6759 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_218640, whole genome shotgun sequence.
ACCESSION   DUKB01000128 DUKB01000000
VERSION     DUKB01000128.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6759)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6759)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6759
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_218640"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1015
                     /locus_tag="HA345_04285"
     CDS             <1..1015
                     /locus_tag="HA345_04285"
                     /inference="COORDINATES: protein motif:HMM:NF012457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HIH84609.1"
                     /translation="IEWSRLEPEPGEWNVKALEVYSDMIDDLIDRGIRPVVTLHHFSH
                     PKWWEEKGGFVNRNNLPEFLSYCERVFDALSDRVETWVTINEPTVFSAMGYTLGMFPP
                     GKRSIRLTLRVMRNVMRGHAMVYRSLKEKRPEVRIGIAKNVTLFDPRNRWSPIDWPIS
                     RLLEWLWNGAWRNGIQRGRMLFSNIPEAKDSLDFVGLNYYTHFLTGLFIPTSGELQFP
                     KREHEIATEFGYPMYAEGFRRAIEFVAPLNVPIEITENGVADAEDALRPEHLKRHLWI
                     VSEAINDGFDIRSYHHWSLMDNFEWAEGYSMRFGLHHVDFETQKRTLRHSGEIYRDII
                     KAH"
     gene            1072..1422
                     /locus_tag="HA345_04290"
     CDS             1072..1422
                     /locus_tag="HA345_04290"
                     /inference="COORDINATES: protein motif:HMM:NF024092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HIH84610.1"
                     /translation="MSILQAYTDAWNNGDIDTLNEIIHDDFVFNPHVGGVTMGKSDLL
                     GFAGSDAVSGENERILYENDEVGVMHSIAHFANGSASEAVLSFVRIMDGKIMSMETGA
                     TPLSEDYVLIGQSE"
     gene            complement(1432..1929)
                     /locus_tag="HA345_04295"
     CDS             complement(1432..1929)
                     /locus_tag="HA345_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017955098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HIH84611.1"
                     /translation="MGGIDDILAANEAYVDNFQHERLVGRAAKGLAILTCMDCRIDPL
                     ALGGLSLGDVKVVRNAGAQLDGTSTHDLVLASHLLDVNRILILPHTRCAMTTATDAQI
                     RAVIEMSSGVKASDLEIRTINDQNQTLIDSVRELRSNPHLKEGCSVHGGIYDVDTGRI
                     KIIDA"
     gene            2028..3938
                     /locus_tag="HA345_04300"
     CDS             2028..3938
                     /locus_tag="HA345_04300"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014215.1,HMM:NF020119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HIH84612.1"
                     /translation="MADDVLDAELISSDALDSEEAAQIRADRRELNQVLGATVAIVIV
                     ALLLSRIITAPLEEDLDDGGWGDEFPPIWERYLTDFNTNESHSFVLQNGSLTGPDGAL
                     LWTGTHHFVEFELPVSEGGAATDPNDVPRVSLAVWIPDMSNGSTVPVIAEFGPYFQEA
                     SVDTPGIEEPGTWLGKMIIEQIVPHGFAFAQVSVMGTGRSNHCMDLMGNAEQLGVDAA
                     VTWLGTQEWSNGNVGMIGKSYDGSTPWQAAMFGNEHLATIVPISGLIGLMELSWRNGS
                     NEARAPIMHNGVYGSYGFDGDTEDLQNFCPDYIIGPGTGVTGYMWGSEFAGTYWAERY
                     FLGRVLENYNGSVYLIQGMHDWNVDPHMAVPTINRLYDNGIQAKGLFGQWDHDYPDRP
                     DIMLDRAGPGRGIEAYPEMVRMDWMQDLLEWFTYYLKDQGSQPWLGIEIQSNQGSWRL
                     EDRYPMSDTTEIIWELGSPDLPSSGGSNTILPDANSGPIYETPPLEENLYFGGLPRIH
                     VQVTTATVGGQIYALMEDCGEDGCIHIGHAIMDLRYHAGGNDEQSWTPIVEEITAMME
                     FFPMDVEVKAGNTIRISLVSTGEDYVPSAASSIVFVEDTGSTLQLDSFDPETRLYYPV
                     PECTHPVCLENS"
     gene            complement(3935..4822)
                     /locus_tag="HA345_04305"
     CDS             complement(3935..4822)
                     /locus_tag="HA345_04305"
                     /inference="COORDINATES: protein motif:HMM:NF013866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84613.1"
                     /translation="MRYHVALTLLIVFAPLSGCVTDSDGLIPTIETDIEHVETCEIFR
                     DNLAPVSEWNTNLYNQWITVNDLMHVSYNDSIDPETMDFGSSENTGRTSGDEQWECGY
                     RYHVWIPSEYTGEEAIPLVIHLHGGLSYVPGTTPEEMDREIPQLDGQPFVIIMPEKKE
                     WDWLPSKVEDIVKDAKRNLLIDEDRVHLTGLSMGGRGTMIVAAELPETFASIAPICPH
                     HWPTDYRELAPDLAHLPTWISHGDIDDISHYDWAVNMSERMEALGADVQMITMEGHGH
                     CNWDLYTEENVGWIMNQRR"
     gene            complement(4864..5286)
                     /locus_tag="HA345_04310"
     CDS             complement(4864..5286)
                     /locus_tag="HA345_04310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84614.1"
                     /translation="MTGPSLPIILLMLLPLLSLTSNLQEPWTQGEGGVVLEAEERTGI
                     PMPRGVRDLVTTIEDPTEFDTIYPGTDQTCREVLNEHFHTNIHLGEDRNELIAMDGSR
                     WQVSGNDVVSLTIDTVEEIAAMRYGSEENTEFESIQSV"
     gene            5481..5813
                     /locus_tag="HA345_04315"
     CDS             5481..5813
                     /locus_tag="HA345_04315"
                     /inference="COORDINATES: protein motif:HMM:NF024953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HIH84615.1"
                     /translation="MIGVTNIFTSNEDLIGSGFTYIAHVPAFVPKFAGISEVLGGIGL
                     ILPAATRIQPQLTVWAATGLMLVVVIAIIMYSWLGEWANIPSPIVTGGLLAFVIWGRN
                     SKLPISSR"
     gene            complement(5815..>6759)
                     /locus_tag="HA345_04320"
     CDS             complement(5815..>6759)
                     /locus_tag="HA345_04320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ceramidase"
                     /protein_id="HIH84616.1"
                     /translation="LYSLLVVLDVWPEASALPGEVTNWCERAAEGLILEPVNTVTNLA
                     FVIVGLLILHRADLQKISEVNSFTRSKSMSTVYAGSVMAIGLGSFAMHGTKTQIGSYL
                     DWGGMLVFIFFPPLYRLKDFLGWSDDALFRNHIILSILVLGLELLQNSDGILGVGDGL
                     RRFGWFNGFVWAVMIGFWIILEIRIGLERTDFSSNLRLVIMSAPPIALALLTYAYSHP
                     WEIYLLCAMFVLISVLINDLETPRIERDSQKWVLLGTSSFILGMLVWPYGKEGSNYCN
                     PDSILQIHGLWHLLCAFATWCFYIHFMSERIIQSDDEE"
BASE COUNT         1738 a         1533 c         1612 g         1876 t
ORIGIN      
        1 gattgaatgg agccgtttgg aacctgaacc aggtgaatgg aacgtgaagg cattagaggt
       61 ctattctgat atgatcgacg atttgattga tcgaggaatt aggccagttg ttacattgca
      121 ccatttctcg catcctaagt ggtgggaaga gaaaggaggc ttcgtaaatc ggaacaatct
      181 ccctgagttc ttatcgtatt gtgaacgcgt attcgatgcc ctatcagatc gggttgaaac
      241 gtgggtgacg atcaacgaac caaccgtatt ctctgcgatg ggctataccc ttgggatgtt
      301 ccctcccggt aaacgttcga ttcgtctcac tcttagagtg atgcgcaatg ttatgcgagg
      361 acatgcaatg gtctatcgtt cactcaagga aaagcgacca gaggtgcgaa ttggaatagc
      421 aaaaaacgtc acattgtttg acccacgaaa ccgttggagt ccaatcgatt ggccaatttc
      481 acgactttta gaatggcttt ggaatggtgc ttggcgcaat gggattcaga ggggtcgtat
      541 gctgttttcg aatattcccg aggccaagga ttctctcgac tttgtaggtc tcaactacta
      601 cacacatttc cttactgggc tattcattcc tacaagtgga gaattgcaat tcccgaagcg
      661 tgaacatgag attgcaacag aatttggtta cccaatgtat gcggaaggat tccgacgtgc
      721 aatcgaattc gtggcaccat tgaatgtccc catcgagatt accgagaatg gggttgcaga
      781 tgctgaggat gctttgcggc cagaacatct gaaacgtcac ttatggatcg tatcggaggc
      841 aatcaatgac ggattcgata ttcgctcgta tcatcattgg tcactaatgg acaatttcga
      901 atgggctgaa ggatactcta tgcgtttcgg ccttcaccat gtagattttg agacacaaaa
      961 gaggacacta cgtcatagcg gagagatcta tcgtgatatc atcaaggcac attgagcctt
     1021 tacaaatcga tactggtaag catcatatcc tactccatat tcccgagagt tatgagtatc
     1081 ttacaagctt acactgatgc atggaataat ggcgacattg acaccctgaa cgaaatcatt
     1141 cacgatgatt tcgtgttcaa cccccatgtt ggtggcgtga cgatgggtaa gtcagacctg
     1201 cttggatttg ctggcagcga tgcggttagt ggcgagaatg agcgcatcct atacgagaat
     1261 gacgaggttg gtgtgatgca tagtatcgcc cactttgcga atggctctgc ttctgaagca
     1321 gtcctctctt ttgtccgcat catggatggg aagattatgt ccatggaaac gggtgccacc
     1381 cctttgagcg aggactacgt cctaatcggt cagagcgagt gagtcattga atcaagcatc
     1441 gattatcttg atgcgaccag tgtccacatc gtagatgcca ccatgaacgc tacacccttc
     1501 ctttagatga gggtttgagc gcaactcgcg cactgagtcg atgagtgtct gattttggtc
     1561 attgatggtc cgaatttcaa gatcagaagc cttgacacca ctgctcatct caatgacagc
     1621 tcgaatttga gcatcagttg cagtagtcat cgcgcaacga gtatgcggga ggatgagaat
     1681 gcgatttaca tctagaagat gacttgctag cacaaggtca tgggtcgagg ttccatccag
     1741 ttgcgctccc gcattccgga ccaccttcac atcgccaagt gagagtcctc cgagagccag
     1801 cgggtcgatg cgacaatcca tgcaggtaag tattgctagt ccctttgctg cgcgtccaac
     1861 aagccgctca tgttggaagt tgtccacata cgcttcgttg gccgcaagga tgtcatcgat
     1921 tccgcccata catcggttcc atcttcggcg atacattgag tttcagggtt attggagtaa
     1981 atccgaggca tcgttagcct gatgtgggga aggggttacg cactggtatg gctgatgatg
     2041 ttcttgatgc ggaactcatc agttctgatg cattagattc tgaagaggcg gctcaaatcc
     2101 gtgctgatcg acgcgagttg aatcaggttc ttggagcaac cgtggccatt gtaattgtcg
     2161 ctctcctcct gagccgtatc atcaccgcac ctcttgagga agatcttgat gacggaggtt
     2221 ggggtgatga atttccacca atttgggagc gttatctcac tgatttcaac acgaatgaat
     2281 ctcattcttt tgtattacag aatggctctt tgactggccc cgatggcgct ttactttgga
     2341 caggtactca ccatttcgta gagttcgaac ttcctgtttc tgaaggaggc gctgcaaccg
     2401 atcccaacga tgtacctcgt gttagcctcg cggtctggat tcctgacatg tccaatggta
     2461 gtacagttcc tgtgattgct gaatttgggc cttacttcca ggaagcttcc gtagataccc
     2521 ctggcatcga agagcctgga acatggcttg ggaagatgat tatcgaacag attgttccgc
     2581 atggttttgc cttcgcacaa gtatccgtaa tgggtacagg tcgttcgaat cattgcatgg
     2641 atctgatggg taatgctgaa cagcttggtg tcgatgctgc tgtaacttgg ctgggtacgc
     2701 aggagtggtc gaatggtaat gtcggtatga ttggcaagtc gtatgatggc agtactccat
     2761 ggcaggcagc gatgtttgga aatgagcatc ttgcaacaat tgttccaatc tctggcctta
     2821 tcggcctaat ggaattgagt tggcgaaatg gtagcaatga ggcccgtgct ccaatcatgc
     2881 acaacggcgt ctatggatcg tatggatttg atggcgatac tgaagattta cagaatttct
     2941 gccccgacta catcatcggc ccaggtacgg gtgttacagg atacatgtgg ggtagtgagt
     3001 ttgctggaac ttactgggct gagcgttatt tcctaggccg cgtattggag aactacaacg
     3061 gtagtgttta cctgattcag ggtatgcatg attggaacgt agacccacat atggcggtcc
     3121 caaccatcaa ccgactgtat gataatggca tccaagcgaa aggtctcttc gggcaatggg
     3181 atcatgatta tccagatcgc ccagatatca tgctagatcg agcaggccct ggaagaggga
     3241 ttgaggcgta tccagagatg gtacgtatgg attggatgca agaccttcta gaatggttca
     3301 cctattacct aaaggaccaa gggtctcaac catggctcgg catagaaatc caatctaatc
     3361 agggctcttg gcgtcttgaa gaccgttatc caatgagtga tactacggag ataatatggg
     3421 aactcggaag tccagacttg ccttcatctg gaggttcgaa caccatcctt ccagatgcta
     3481 attctggacc aatatacgaa acaccaccac tcgaagaaaa cctctacttt ggcggtttac
     3541 cccgtataca cgtccaggtt actactgcga cagtgggtgg ccaaatttac gccttgatgg
     3601 aggattgtgg tgaagatgga tgcattcaca ttggtcatgc aatcatggat ctccggtatc
     3661 atgcaggtgg taatgatgag caatcttgga ctccaatagt tgaggaaatt accgcgatga
     3721 tggagttctt cccaatggat gttgaagtaa aagctggtaa tacaatccgc atcagcttag
     3781 taagcaccgg ggaggattac gtaccctcag cagcctcatc cattgttttt gtagaggata
     3841 cgggttcaac actgcaactc gattccttcg atccagagac acgtctatac tatccggtgc
     3901 cagaatgcac tcatccagta tgccttgaga attcttaacg tcgttgattc attatccaac
     3961 caacgttttc ctcagtgtat aggtcccaat tgcaatgtcc atgtccttcc attgttatca
     4021 tttgcacatc agctcccaat gcttccattc gttctgacat gttgactgcc cagtcgtaat
     4081 gtgatatgtc atcgatatca ccatggctaa tccatgttgg tagatgagcg agatctggag
     4141 cgagttcgcg gtagtcagtt ggccagtggt ggggacagat tggggcaatt gaagcgaagg
     4201 tttccggcaa ttctgcggcc acaatcatcg ttcctcgacc ccccatcgaa agtcctgtga
     4261 gatgtactct gtcctcatca atcaacaaat tccgctttgc atctttcacg atgtcctcta
     4321 cctttgacgg gagccaatcc cattctttct tttcaggcat aattatcacg aatggttgcc
     4381 catctaactg aggtatttca cggtccattt cttctggtgt tgtgcctgga acataactca
     4441 ggcctccatg gagatggata acgagaggta ttgcttcctc tccagtatat tcactcggaa
     4501 tccaaacatg atatcgatat ccacactccc attgttcatc tcctgaggtc cgtccagtat
     4561 tctcgctact cccgaagtcc attgtttctg gatcgattga atcattgtac gatacatgca
     4621 tcaagtcgtt tacagtgatc cattgattgt agagattcgt attccattct gatactggtg
     4681 cgagattgtc tcggaatatt tcgcaggttt ctacatgctc gatatctgtt tcaattgtag
     4741 gtatgagtcc atcagaatcc gttacacaac cgcttagtgg agcgaatacg atgagtaatg
     4801 tgagtgcaac atggtatctc atgtcgggac caatacaggt tctcgtatga tttgttcgtg
     4861 tgattatacg gattgtattg attcaaattc agtgttttct tcactaccgt atcgcattgc
     4921 tgcaatttct tctacagtat caattgttag agatacgaca tcattaccag aaacctgcca
     4981 acgactccca tccattgcaa ttagttcgtt acgatcctcg ccaagatgga tattcgtatg
     5041 gaagtgctcg ttcaacactt cacggcaggt ttggtctgtc ccgggatata ttgtatcgaa
     5101 ttctgttgga tcttcaatcg tagtgactag atctcgtaca cctctaggca tgggaattcc
     5161 tgttcgctct tcagcttcaa gaacgactcc accttctccc tgagtccacg gttcctgcag
     5221 gttagatgtc agactaagta aaggtaagag cattaacagg attatgggta aagaaggccc
     5281 agtcatagaa ttagatttct ttcttctttt atgattcctt gttgaacaaa agcatcatca
     5341 tgactacgta gaaaatacgg tagttgaaat aatattgaaa gcggtttatt gaccaaatgg
     5401 ccgatcaatt tcaacctaat tctcaggttc taaatgtctc tctttggtct gtacaatgtt
     5461 tcttgggaat ttcttttttc atgataggtg tgacgaatat tttcacatca aacgaggatt
     5521 tgattggatc aggcttcact tacattgccc acgtacctgc cttcgtacca aagttcgcag
     5581 gtatctctga ggtgcttggc ggcatcgggc ttatcctacc cgctgcgaca cgtatccagc
     5641 cccagcttac ggtctgggct gcaaccggcc tgatgttagt ggtggttatc gccataatca
     5701 tgtattcttg gcttggagaa tgggcgaaca ttccatctcc catagtgaca ggggggttgt
     5761 tggccttcgt aatctggggg cgaaacagta agctcccaat ctcgtcccgc tgaactactc
     5821 ttcatcatcg gattgaataa ttcgttctga catgaagtgg atatagaaac accaggtagc
     5881 gaatgcgcag agcagatgcc acagtccgtg gatttgtagt atagaatctg gattacaata
     5941 gttgcttcct tctttgccat aaggccagac aagcatccca agaatgaatg aactcgtgcc
     6001 gaggagaacc catttctgcg aatcgcgttc aatacgtggt gtttccagat cgttgattag
     6061 aacagagata agaacaaaca tcgcacacaa gaggtatatt tcccaaggat ggctatacgc
     6121 gtatgtcagt aaggccagcg caattggcgg cgcactcata atgactaatc gaaggttaga
     6181 actgaaatcg gtccgttcaa ggccgattcg aatctcaaga ataatccaga aaccgatcat
     6241 cacagcccat acgaatccat tgaaccatcc gaaccttctg agaccatctc ctactcctaa
     6301 gataccatca ctattctgaa ggagttcaag acctaatacg agtattgaga gtatgatgtg
     6361 atttcggaac aaagcatcat ctgaccatcc caagaaatcc ttcaaccggt ataatggggg
     6421 aaagaaaatg aatacgagca ttccacccca atcgagatag gaaccaatct gtgtttttgt
     6481 tccgtgcatt gcgaaactac cgagcccaat tgccatgacc gatccggcat atactgtcga
     6541 cattgacttg cttcgtgtga aactgttaac ttccgaaatc ttctgtaaat ctgcacgatg
     6601 tagaatgaga agtccaacaa tcacaaatgc aagattagtc acagtgttta caggttctag
     6661 tatcaaacct tcagctgctc tctcacacca atttgtgact tcacctggta gcgcggaggc
     6721 ttcgggccat acatcaagca caacaagaag tgagtacaa
//
LOCUS       DUKB01000129            5439 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_197398, whole genome shotgun sequence.
ACCESSION   DUKB01000129 DUKB01000000
VERSION     DUKB01000129.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5439)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5439)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5439
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_197398"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..368)
                     /locus_tag="HA345_04325"
     CDS             complement(<1..368)
                     /locus_tag="HA345_04325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84617.1"
                     /translation="MNRTAAMTSVLLLLLVVFVPVTNSQANGNTGNSCGCHGGQDSST
                     TVSIIGQPSSYTPGSTYSLSITVSSSVISSDMGGFSMSSTAGTFSNPGLDAKLASGKV
                     THSTISARNWSVDWTAPVAGT"
     gene            479..2557
                     /locus_tag="HA345_04330"
     CDS             479..2557
                     /locus_tag="HA345_04330"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012928.1,HMM:NF014757.1,HMM:NF027439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA
                     hydratase family protein"
                     /protein_id="HIH84618.1"
                     /translation="MSAPIEKVAVVGAGNMGSGIAQKTAQERFDVQMVDREAQWVERG
                     QSIIANFLSEAVERRIFSEDQVEDIKGRITGVVGVENVAQDTDLVIEAVFEDFDIKSA
                     VFHTLDASCGERTILASNTSSLSVNDLSRATARPDRFVGLHFFYHPAKNRLVEVIPSN
                     DSSEDTVSRVVQYCKQLGKVVIVCKDRPGFVVNRFFVPWLNEACLLMEEGVATPAQID
                     AVACDSFNIGMGPFALMNLTGPPIALHSTDYLAEQLDTPRYTGAQNLRDLVKAEAMWD
                     IGDDKSCDTQTAITIRERLLGTVFAVATQIVEEEICSMEDVDRGAKVGLRWASGPFEL
                     MNEVGVKEAYRMAADYTALHTNGEGFTLPDFLQTKADTGNPWVFEFVDAEIRGTIATV
                     NINRPEAMNALNETVVEQLGAVMDALNQDNSVDTIVLEGAGKAFVAGADVKFFVDRLD
                     EDAFPKIYDFTAEGHTVFDKIENSPKTTIALTTGLALGGGLELALACDYRVGTRRTQF
                     RFPETSIGIYPGLGGTQRTAKICGLPAARWAVLAGNWIGPQDAADLGLLTHFVNPSDV
                     DSTVEEIAEKGKPEKKYAGQPSRLSDTIKSAVAFYCDENVKAILEGKDPPTPVNEAYA
                     GRQLKQISRTAPIALRMASELIDIAGSSELTDGLDKELEHLEAIFATKDAYEGLSALI
                     QGRRPSYTNE"
     gene            2898..3359
                     /locus_tag="HA345_04335"
     CDS             2898..3359
                     /locus_tag="HA345_04335"
                     /inference="COORDINATES: protein motif:HMM:NF013777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HIH84619.1"
                     /translation="MVEPSMRIKSDDFASINTTIGQVRNHGSDIRSTLEKYSDDEIHN
                     IAWEVQAGVEALGVFGSRWTIEILAALYIAGERRFNELRHLLNGISSRTLSDKLRACK
                     EVGLIDRIVIEGPPIRVSYKLTEHGTRCGKLLSPLVAYMKIRNGAIIEEDV"
     gene            3406..4047
                     /locus_tag="HA345_04340"
     CDS             3406..4047
                     /locus_tag="HA345_04340"
                     /inference="COORDINATES: protein motif:HMM:NF024804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HIH84620.1"
                     /translation="MPLLRQWHQRHPWVLGGIIGVASGIAGLGASLTGFGASGAISSP
                     NDHWEHPLRKRVLSILERKPGLPYRELQRELNAANGTLRHHLDVLIAERSVTVVHVNG
                     RSCHYAGAPAQMEILSGITVGDDERAAAMMPVGLSTVQRLVVAHLCRDELPRSQAQLA
                     RNLGRSRASVHSAITVLRRRGIMHSSDLQLAPHLAGLRNGNIEYDWLDESIRP"
     gene            4141..5202
                     /locus_tag="HA345_04345"
     CDS             4141..5202
                     /locus_tag="HA345_04345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84621.1"
                     /translation="MPIGTDDPDVHLAWILDSLGLIRRRGQGESVEDSRGALHRLMRD
                     QFLAEPRRGWDTRTLQEASGMSSTALHHQLVKLRSAGILSVVTEERWKHHVLRNGSLP
                     HTIELIANQARTILGQRLAAFDNRIVKSDERMVLEALQQGAEDLSFRITIAESGPMNE
                     GDDELHHLMRDLGYCGARGRIEDDLALRTFDVLANSLRPITADVLMDETSETRTRVLG
                     VLDRFRASHMVERVLLSDRIPHDVFVGLTHQWVSRGERWLMGRGGLSRLDDVVSTTII
                     DALKQNQLTTETVENVLNNVDLEARCLLVNTLGGRVPYGYRLAGADAATVKRRIEYRV
                     ERLLRRLEMITEKYADLIQ"
     gene            complement(5192..>5439)
                     /locus_tag="HA345_04350"
     CDS             complement(5192..>5439)
                     /locus_tag="HA345_04350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84622.1"
                     /translation="PGGERAAIKLWAWRRYCELAEEAYGDGRNNHLKRHAISFTKGIA
                     GASKMRIRLHSTLEAKDLMHTVDEFLETSMLGSSIIV"
BASE COUNT         1406 a         1344 c         1359 g         1330 t
ORIGIN      
        1 gtgcccgcaa ccggagcggt ccaatcaacg ctccaattcc ttgcggatat agtggaatga
       61 gtgactttcc ctgaagcgag tttcgcatcc agaccgggat tggagaaggt tcccgcagtg
      121 gaactcatag agaatccgcc catatcacta gagatcacac ttgaggatac ggtaattgac
      181 aatgagtagg ttgaaccagg cgtgtaggaa gacggttggc cgatgataga tactgtagtc
      241 gaggaatcct ggccaccatg gcagccacat gaatttccgg tgtttccgtt agcctgactg
      301 ttcgtcacag gtacgaagac cacaagcagc aggagaagga cggaggtcat cgctgctgtg
      361 cgattcatcg agcggatttg agtgctagag gttatcatca ttcgtccaca ttgtcaggtc
      421 tagacctact ccttttcgag ccgttgcatt catggacggt ttgcaacagc gcggatgcat
      481 gagtgcacct atcgagaagg tggccgtcgt cggcgccggc aatatgggaa gtggaatcgc
      541 ccagaagacg gctcaggaga ggttcgatgt ccaaatggtg gaccgcgagg ctcaatgggt
      601 cgaacgaggt cagagtatca tcgctaattt tctctcagag gccgttgagc gtcgcatctt
      661 ctcagaagat caagtcgaag atatcaaggg aagaatcact ggagtcgtgg gtgttgaaaa
      721 cgtcgcacag gacaccgatc ttgtgatcga agccgtgttt gaagacttcg atatcaagtc
      781 agcagtattc cataccctcg atgcaagttg tggcgagaga accattctcg catcaaatac
      841 ctcgtctctc agtgtcaacg atctctctcg tgcaactgct cgtccagatc gcttcgtcgg
      901 cctccacttc ttctaccatc ctgccaagaa tcgattagtt gaggtcatcc catccaacga
      961 ctcctctgaa gatactgtga gtcgagtcgt gcagtattgc aagcaacttg gaaaggtcgt
     1021 cattgtctgc aaagatcgcc ccggattcgt cgtcaatcga ttcttcgtgc cgtggcttaa
     1081 cgaagcttgt cttctaatgg aggaaggagt agccacacct gctcaaattg atgctgtcgc
     1141 ttgtgattcc ttcaatatcg gcatggggcc gttcgccctc atgaatctca ccggcccacc
     1201 tatcgctctg cactctacag attacctcgc agaacagttg gatactccgc gctacactgg
     1261 cgcacaaaat cttcgtgatt tggtcaaagc agaagccatg tgggatatcg gcgacgacaa
     1321 atcctgtgac acacagaccg ccataacaat tcgagagcga cttcttggta cagtgtttgc
     1381 agttgctaca caaattgtag aggaggaaat ctgctcaatg gaggatgttg atcgaggtgc
     1441 taaggttgga ttgagatggg cttctgggcc atttgaacta atgaacgagg ttggggtaaa
     1501 agaagcatac agaatggctg cagattatac tgcacttcat acaaatggag agggattcac
     1561 acttcctgat ttccttcaaa ctaaggcaga tactgggaac ccatgggtct tcgaattcgt
     1621 tgatgctgag atccgaggga cgattgctac tgtgaatatc aaccggcctg aagcaatgaa
     1681 tgcgctcaat gagaccgttg tggaacaact cggtgcagtc atggatgcgc taaatcagga
     1741 taattccgtg gacacaattg tgctcgaagg tgccggcaag gcatttgtcg ctggagcaga
     1801 cgtgaagttc ttcgtcgacc gcctagacga ggatgcattc ccgaagatct acgatttcac
     1861 tgctgagggg catacagttt ttgacaagat tgagaacagt ccgaagacta cgattgcact
     1921 caccacaggt cttgcccttg gaggaggatt ggaacttgct ctcgcttgtg actaccgcgt
     1981 tggtacgagg agaactcaat tccgcttccc tgaaaccagt atcgggattt atcctggact
     2041 cggaggaaca caaagaaccg ccaagatatg tggacttcct gcagctcgat gggcagtctt
     2101 agcaggcaat tggattgggc cacaggatgc agcggatctc ggattattga ctcatttcgt
     2161 taatccatca gatgttgatt ctactgttga agaaattgct gaaaaaggga agccagaaaa
     2221 gaagtacgct ggccagccct ctcgactctc tgatacaatc aagtccgccg ttgccttcta
     2281 ctgcgatgaa aacgtgaaag ctattctcga aggaaaagac ccccccacac cagtcaatga
     2341 agcatatgct gggcgacagt tgaagcaaat ctctcgaacc gctcctatcg ctctccgaat
     2401 ggcaagcgaa ctcatcgaca ttgctggatc cagcgagctc acagatggtt tagacaagga
     2461 acttgaacat cttgaggcga tcttcgccac gaaggatgcc tacgaaggac tctctgccct
     2521 aattcagggg cgacgaccat cctataccaa cgaatgaagg gtcatagccg atcaatcaac
     2581 gggttactat cttggaggag ttgaatacca gggtgcacgc cagtttgtta cagcacgaat
     2641 catgaattcc tttaccgctg acatacattc accaccactt gagaaggcga tcaaacaagc
     2701 gcccttcgcg cttttcctta tctgtcatct tggtactcca atcatccatc cagttctcca
     2761 tgtatctatc catttgtatc acttctgaaa tctgcttcca gtttcacact aaacttgtat
     2821 ccggtactat atcaatgtat gactaaacgt gccactagta gggtgcaatt tatacaccag
     2881 atgcccttag atgcaccatg gttgaaccat caatgaggat aaaatcggat gatttcgcat
     2941 ccatcaacac cactatcgga caagtcagga accatggcag cgatattcga tcaactctgg
     3001 agaaatacag tgatgatgaa atccacaata tcgcttggga ggttcaagct ggcgtcgaag
     3061 cacttggtgt ctttgggtca cggtggacta tcgagattct tgcagccctc tacatcgctg
     3121 gagagcgccg tttcaatgag ttacgccacc tcctcaatgg cattagtagc cgtaccctat
     3181 cagacaaact ccgagcttgc aaagaagttg gtctaatcga tcgtatcgtg attgaaggac
     3241 cccctatccg cgtctcctac aagcttacag aacatgggac tcgttgtgga aaactcctca
     3301 gtccactagt tgcatacatg aagatccgta acggtgcaat tatcgaagaa gatgtctgaa
     3361 catcgaacca atggcttgaa gtccgttcgg atggaaacgt aacccatgcc cctgcttcgc
     3421 caatggcatc aacgccatcc atgggtcctc ggagggatta ttggtgtagc aagcggtatc
     3481 gctggattgg gagcgagtct tactggtttt ggggccagtg gcgccatcag ttcacccaat
     3541 gatcactggg aacatccgct acgcaagaga gtcctatcga ttcttgagcg aaagccaggc
     3601 ctcccataca gagaactaca acgtgaactc aatgcagcca atggtacact tcgacaccat
     3661 ctcgatgtcc tgattgctga acgttctgtc actgttgtcc atgtcaatgg acgatcctgc
     3721 cactatgcag gtgcacctgc acagatggaa attctatccg gaatcacggt aggtgatgac
     3781 gaacgtgctg ctgcaatgat gccggtgggt ctgtccactg tccaacgact tgtagttgct
     3841 catctttgta gagatgaatt accgcgatct caggcgcaac ttgcccgcaa ccttggacgt
     3901 tcccgcgcat cggtccattc ggcaataact gtcctcagaa gacgtggaat tatgcacagt
     3961 agcgatctcc agcttgcgcc tcatcttgca ggtctgagaa atggcaacat cgaatatgat
     4021 tggctggatg aatccattcg accctgaatc aatgtccatt cgcacgtctt cgtccgaatc
     4081 ctattgagcc tgaacctgag aacaaggcct gtgttcatcc tgaagcttga ggagcatcca
     4141 atgcctattg gcacagatga ccccgatgtc cacctagctt ggattctcga ttctctcgga
     4201 cttattcggc gccgaggaca gggagaatca gtcgaagatt ctcgtggcgc cctacatcga
     4261 ctgatgcgag atcagttcct tgcagaacca cgaagagggt gggacacacg gactctccaa
     4321 gaagcatcag gtatgagttc cacagctcta caccatcaac tggttaagtt gcggtctgct
     4381 ggaatattga gtgtagtcac tgaagaaaga tggaagcacc atgttctccg aaatggatcg
     4441 ttacctcaca ccatcgaact catcgcaaat caagcacgta ccattctcgg gcaacgcctt
     4501 gcagcattcg acaatcgtat tgtgaaatca gatgaaagga tggtgcttga agcattacag
     4561 caaggagctg aagacctctc attccgcatt actatcgctg aatctggccc aatgaatgag
     4621 ggtgatgatg aattgcatca tctaatgcga gatttaggat actgtggtgc tcgaggacgt
     4681 atcgaagacg atctcgcctt gagaaccttc gatgttctgg caaactcact acgtccgata
     4741 actgcagatg tactcatgga tgagacatct gagactcgga ctagagttct tggcgtccta
     4801 gaccgttttc gagccagcca catggttgaa cgtgttctcc taagtgaccg gattccgcat
     4861 gatgtcttcg taggtctaac ccaccaatgg gtgagtagag gagaacgttg gctgatggga
     4921 cgtggaggtc taagccgact tgatgatgtg gtttcgacta ccattatcga tgctctgaag
     4981 cagaaccaac tgaccacaga aactgtggag aatgtcctca ataatgtcga ccttgaggct
     5041 cgttgtctcc tagtgaatac ccttggcggc cgggtaccat atggataccg acttgcaggg
     5101 gcggacgcag caacggtgaa gcgtaggatt gaatatcgtg ttgaacgatt actccgaaga
     5161 ttagagatga ttactgagaa gtacgcagac ctcatacaat gatgctgcta cctagcatag
     5221 aggtctcaag aaactcatcg acagtatgca ttaggtcctt tgcttcaagg gtgctatgga
     5281 ggcggattcg catcttacta gcaccagcaa tacccttcgt gaatgagatt gcatgtcgct
     5341 tgaggtgatt gttgcgcccg tcaccatatg cctcctccgc taattcacag tagcgccgcc
     5401 aagcccagag cttgattgct gcacgttctc cacctggca
//
LOCUS       DUKB01000130           11512 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_886, whole genome shotgun sequence.
ACCESSION   DUKB01000130 DUKB01000000
VERSION     DUKB01000130.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11512)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11512)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11512
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_886"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(51..1274)
                     /locus_tag="HA345_04355"
     CDS             complement(51..1274)
                     /locus_tag="HA345_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84623.1"
                     /translation="MSKNAFRWRNSPAIIARYMHDREVADGAEVTLKPNEACVVIEDG
                     KIAGVASQRHMEVNPEAGLLSKMFGRGNPKRSFLFAFLGPHEMIIKVSAITKDGRTAN
                     GFVVLRAVFTRETVPRLLQIPAKGTMNITIGDLVSRIEAEVNATIAPRVRETLEADLK
                     DQGATEDLMMDIKMGTRGTMESLGMTLQSSFINWSVTEAERVLQMRADLEVLAEKNAI
                     VDEQSSMEMERSLQANLMRAEMEARASMASLAADERAKAEMELARIRAQGDIDNERWE
                     QVKALHQDRQDLRRTEEILDGDHQLALARIEAERQRVLQEPTFEAERTRKEAAMDMFD
                     VVQQRKKERLAMEAERERVRVEAQAKGSEAIISTLTEIAQSSKDPEVAMEALRQLAEI
                     RKADVAGAKDAYIDD"
     gene            complement(1280..1789)
                     /locus_tag="HA345_04360"
     CDS             complement(1280..1789)
                     /locus_tag="HA345_04360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84624.1"
                     /translation="MEPSTLALPVLINGVKALASAYDGYEKGRFMKSDQAVREEIRRR
                     ADMMRSHIERIMERHHRDGNREQRDECDSTLTSVHGMSDDATMAVTGSPNSIHDGVGK
                     LSRKGRKRIVEHDLKTLNLLVDTTRMLNLILSDDEDAPTMADIHDRIGRARNHFRERN
                     MYIDGLEKR"
     gene            1898..2569
                     /locus_tag="HA345_04365"
     CDS             1898..2569
                     /locus_tag="HA345_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84625.1"
                     /translation="MAQPPVGGNRIAVGWTLSLICWIFAILVLVVPPSDDIDGSLTST
                     TGDDEMSEPSSEDTELFACCCVSGFLPLLLVSSGRGAKKRAQVQFMQSQIAGSYPSIQ
                     QQQMMAQQNMIVQQQMAAQQKMNAKIILKEKQRIAAQQEAVRLQAQMNQSASHTTAQM
                     QSMLDTLNQLKESAEKSEREKQELEQKLEETKATTVVQNITYNIQDSAIAGDIHPGLK
                     EQDEL"
     gene            2619..3680
                     /locus_tag="HA345_04370"
     CDS             2619..3680
                     /locus_tag="HA345_04370"
                     /inference="COORDINATES: protein motif:HMM:NF026406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4537 domain-containing protein"
                     /protein_id="HIH84626.1"
                     /translation="MPFCRDCGKEVMEEWNLCPFCGSELSNSENNGGDSQSTSNSGID
                     FTDSAMSGDIHHTIINNDVEAVTNAVLIALDRLGVVNSEPSVNAPAELVPPEMAALSV
                     GEGVDYYSPTNNRWLDACEVIAVNDDGTYDVTVPKTGQIETKYGVVIGDSPGTIRPAI
                     PLFSEGDRVLGNWRNAGSFYMGTIVDINSDGTYDIQYDDGDAELKVDQSRIFHAPQFD
                     VGDRVFANWKAHGYYFPGHIGAIHPDHTMRIDYDDGDVEDDVPLSRIRIIPDDDTQMQ
                     DYAESLSEAEKEILDAFRVFDPDESGTISAAELFRILTAIGDDPIDVDEVHELFNELG
                     ISMEAELDYRQLAKWLVSH"
     gene            complement(3684..4586)
                     /locus_tag="HA345_04375"
     CDS             complement(3684..4586)
                     /locus_tag="HA345_04375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84627.1"
                     /translation="MRSTPDFDSMATLPPAGDASPEQELIRWSILVALSLIALAVGHF
                     VTSPHHRFLSKKISPTMLLLAPRAGMILGISTILVSVGLAPFSNDVYSGVICPCHWTE
                     SFHEQYTTMSILVAYAPMKYVIWIGFNTVAFLAMITAFIGIHRWWNNPVFNSPGRKVV
                     LTIWLVLMFMLAFSISADLMFSRHFDRSLHITLGYAFFVSTALGALFGHPLVRWETIS
                     RREAGLPISEIGQRWSMIAMTICFILSLWYLDLYELRIVSPAIFPNKTEGILAFSEHL
                     LISSQLIWMGSLSHVFLAGSDEEE"
     gene            complement(4614..5723)
                     /locus_tag="HA345_04380"
     CDS             complement(4614..5723)
                     /locus_tag="HA345_04380"
                     /inference="COORDINATES: protein motif:HMM:NF012927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase"
                     /protein_id="HIH84628.1"
                     /translation="MDPVEAWAFPSNRARVRNCTVLAALTNKQSNKDGTLSDEEIAFL
                     LRRAEGGFGIITTAASHVMENGQGWPGEMGVWGDHQIPGLTRLADELRNRGALSLVQI
                     FHGGMRAPADLIGTIPISASINHEPKTGNKPAREMTVLEIEETIEAFATAAERCDKAG
                     MDGVEIHGAHGYLIAQFLGTETNRRGDEWGGDLTGRSRFLMRIIQAVRDRTSPNFLVV
                     VRISPEIVDLGIHLDESLELARRLVDTEIDALHISCWDVFKGSETDLTDSRTLTSRFR
                     EVIPTEFPLISTGSIWTAADVRFVMNEGADLVGVGKVGIAHPDWPLGLMDPNFAPTRP
                     PFTTEHLASMALSPIFVEYMHRYRGFVVGGRPADD"
     gene            complement(5756..5857)
                     /locus_tag="HA345_04385"
     tRNA            complement(join(5756..5794,5820..5857))
                     /locus_tag="HA345_04385"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5821..5823),aa:Tyr,seq:gta)
     gene            6120..7172
                     /gene="ftsZ"
                     /locus_tag="HA345_04390"
     CDS             6120..7172
                     /gene="ftsZ"
                     /locus_tag="HA345_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015411283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HIH84629.1"
                     /translation="MDEELAGFGVPNPRILICGCGGSGNNTMNRIVHLGVEGATTVAI
                     NTDKQHLDHTRAMQKLLVGRHITRGLGAGGNPEMGRRCAEAGRDVISKIVQGADLVFI
                     TAGLGGGTGTGIAPVVAEEAKRNGALVVGIVTTPFQVERRQRMKRALEGLANLRNQAD
                     AVLVLDNNRLLHYVPNLPLDEAFSIMDQLIAEIVKGIVETITLPSLINLDFADVRTIM
                     KNGGVTMMLYGESDRGPEEVVHESLNHPLLDISIDGATGALIHVTGGAHMTLEQANQV
                     CELMTNRLSSEAHVIFGARQAPEFGDTIKVMAIITGVGSERLQQANVSADILGEALNI
                     ARRGEAGSRFGFQRFD"
     gene            7217..8074
                     /locus_tag="HA345_04395"
     CDS             7217..8074
                     /locus_tag="HA345_04395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84630.1"
                     /translation="MRRTTLVPAALTLALLMLTSSAVTAGGDVTVMQGAVNTEQPTAE
                     NNTFNIFGRPNAEPCWGHFNNTDADNSNNGYGEKTGSGSSVVEIDWHCRMDPVLQDTF
                     ALKEGDNIEVHLALDITGDANCQGQCENLNVSLMRGSVAAVTQEFNAGEGESIMIDWV
                     IPVTPDLVPWNRTDDNPGIKITWAGQGQQGNFIFSGQPAEFRLYYTHPCHSDTTAPQE
                     ANCNSDTEKPANHNSTVTFPILNQTEADQVLDTGGADEEETPGFGAVVGLGGLAAAAW
                     MRGGREEDE"
     gene            complement(8075..8524)
                     /locus_tag="HA345_04400"
     CDS             complement(8075..8524)
                     /locus_tag="HA345_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84631.1"
                     /translation="MLDYSLSRLFREMARFAVVGAFNVLVCLILYEIFVILDPWPAYT
                     LGFAFWLSEGMSCIVAHYLHRRVTFQSSSPYARSLTLTLIIYGASITIASYFHHFIAE
                     VWDSGDLNPVLVEYGSWYINTALVGVIAFLALRFIAFPPSDDVNESE"
     gene            complement(8529..9107)
                     /locus_tag="HA345_04405"
     CDS             complement(8529..9107)
                     /locus_tag="HA345_04405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84632.1"
                     /translation="MVMALTPRQWVGVAALISLILVPIFYYFWRLWDRPSAAAKEEMD
                     RRKKEHDIRLAFEIEEMKLREEEARQAALEIQLRRRKGPEPVATSTVSAAFGQLGVNT
                     ELSHSIADSDTRVVTESEENLPIEMPEDADIPQIEAMLESLPEVEEEFILPELGPIAI
                     EMPKDSLPHAEEVKSLAVEPAPELDPWDGTDW"
     gene            complement(9152..10639)
                     /locus_tag="HA345_04410"
     CDS             complement(9152..10639)
                     /locus_tag="HA345_04410"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015791.1,HMM:TIGR00196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HIH84633.1"
                     /translation="MANWAMHPDEVEVFDANARHLDVSIQDLMQAAGQALAAETVRIV
                     EASEAPEHREIWILCGSGNNGGDGFAAALSLHESGHSVRLIASHVTQKGESAESFRNA
                     CREASLPIDVWPMVPLESKPRAIIDSLLGAGAVGSVPRGDVSELLEWTRPYSASVNVI
                     ACDLPTGFGTDAVLSATSTVTFHAEKIGMRDAMGTIIPTIGHLRVAPLPWPDEVLDCG
                     PGDALRYPPLNPDARKGDRGRLLIVGGGPYHGAPILAGDAAARSGCDLVHVAMPSEAR
                     SRAEWPPHLIPESIPDEVSLTLDSVEHLLGRVLSGRGVQAMVIGPGLGRGEEVSKAVE
                     RLIEVAVEESVPVVIDADAISVLPKGRWPAGMVGIITPHSREAEEWIGPEPAAIRNEL
                     DQADDPEARVVLLTGPVDRLFGPQSRGALGTGGNPRMAVGGTGDLLAGICGGLLAQGM
                     APWPAARLASALLREAGNATALERGPGLVASDVPPHIASTLANWI"
     gene            complement(10679..>11512)
                     /locus_tag="HA345_04415"
     CDS             complement(10679..>11512)
                     /locus_tag="HA345_04415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HIH84634.1"
                     /translation="PEVFAQAPGGPIVQLAMVTMFFLALSFAALTSMISTVELCVRNF
                     VDHGVERSQAVGFTGGALFLFGIPSAALWILMDESTGVAFPQFLEVQDHIWGYGLMFS
                     GLFIAFSIWKYGWNRYKVWQDENDIEGFDFRDYLDNGVSSFRDDFINTGDNDWWIGKW
                     WDYIMYLGFPIMFTVLMGSYFIDVIFNVDDPWNPGNPKGISIVLLFWGFTAAVFILLN
                     RWLVSRPLYRNVPEGAEVPIDTLPGGEDDMILQVGDIWTGGDLDGDGSGKDRVLVAEL
                     A"
BASE COUNT         3143 a         2960 c         2702 g         2707 t
ORIGIN      
        1 gatgaattcc tcgagaatat tgacagaaat gaacgataga atttcgagat tcaatcatca
       61 atatatgcat ccttagcgcc agcaacatcc gccttccgaa tctcagctaa ctggcgcaat
      121 gcttccatcg caacttcagg atccttgcta gattgggcga tttcggttaa ggtagagata
      181 attgcttccg aacccttggc ttgagcttcg acacgtacac gctctctctc tgcctccata
      241 gccagccgtt ccttcttacg ctgctgtacc acatcgaaca tatccattgc agcctccttg
      301 cgtgtgcgct cagcttcgaa cgtaggctct tggagaactc gctgacgttc agcctcaatc
      361 cgggcaaggg ccaactgatg atcgccgtcg agaatttcct cagtacgacg gaggtcctga
      421 cggtcctgat gtagtgcctt gacttgttcc cagcgttcat tgtcaatatc tccctgagcg
      481 cgaatacgag cgagttccat ctcggcctta gcgcgttcat ccgcagcgag ggaagccatt
      541 gaggcacgtg cctccatctc ggctcgcatt agattcgcct ggagagagcg ttccatttcc
      601 attgatgact gctcgtcgac aatcgcattc ttctcagcga gaacttccaa atcggctcgc
      661 atctgaagta ctctctcagc ctcagtaaca ctccagttaa tgaaactcga ttgaagtgtc
      721 atccctagtg attccatggt tccacgtgtg cccatcttga tgtccatcat gagatcctct
      781 gtagctccct gatccttgag atccgcctcc aatgtctcac gcacacgagg tgcgatagta
      841 gcgttgacct ctgcctcaat cctcgacacc aaatctccaa ttgtgatatt catggtacct
      901 ttcgccggga tttggagaag acgtgggacc gtttctctcg tgaatactgc acggagaacg
      961 acgaatccat ttgcagtacg cccatctttc gtaattgcag agaccttgat gatcatctca
     1021 tgaggtccaa ggaaagcaaa caggaaacta cgcttcgggt ttcctcgacc aaacatcttg
     1081 gagagaagcc cagcctctgg gttgacttcc atatgacgct gagaagcgac acctgcaatc
     1141 ttaccatcct cgattacaac acaggcctca ttgggtttga gagtcacttc ggcgccatct
     1201 gcgacctctc tatcatgcat gtacctagca ataatcgcag ggctgtttct ccatctgaat
     1261 gcgtttttac tcatttcaat cacctcttct ctaatccatc gatgtacata ttacgctcgc
     1321 gaaaatgatt cctcgctcga ccaatccgat catgaatatc cgccattgta ggagcgtcct
     1381 catcatcgct gagaataaga ttcaacatac gagtcgtgtc aacaagcaga ttcagggtct
     1441 tcaaatcgtg ctccacaatt cgcttcctgc ccttacgact gagttttccg acaccgtcat
     1501 gaatagagtt tggagaaccg gtgactgcca tggttgcatc atcgctcatt ccatgaaccg
     1561 atgtcaaagt ggagtcgcat tcatctcttt gctcacgatt tccatctcga tgatgtcttt
     1621 ccataatacg ttcaatatgg ctacgcatca tgtctgctcg tctacgaatc tcctctcgaa
     1681 ccgcctgatc cgatttcatg aaacggcctt tctcatagcc atcgtaagca cttgcaagcg
     1741 ccttgactcc gttaatcaga accgggagag cgagggtgga cggctccatg gaattatttg
     1801 tgcccgttga cctatcaaac ctcggtcttc gattcgattg gcgatattat gattctctag
     1861 gctcaattct gatatacgcc ggtgtaatgc aattggtatg gcacagccac cagtgggcgg
     1921 aaatcgtatt gctgttggct ggacattgtc attgatttgc tggattttcg ctattcttgt
     1981 attggtcgtc cccccttcgg atgatattga tgggtctttg acttcaacga ctggagatga
     2041 tgagatgagc gagccatcta gcgaagatac tgaactcttc gcttgttgct gtgtttctgg
     2101 gttcctgcct ttgttactgg taagttctgg cagaggtgca aagaaaagag cacaagtgca
     2161 gtttatgcaa tctcaaattg caggatcata tccttccatt cagcaacaac aaatgatggc
     2221 tcaacagaat atgatagttc aacaacaaat ggctgcgcaa cagaaaatga atgctaagat
     2281 tatactgaag gaaaagcaaa gaattgctgc acagcaagaa gctgttcgac tgcaagcaca
     2341 aatgaaccaa tctgcaagtc atactactgc tcaaatgcaa tcaatgcttg atactctaaa
     2401 tcaactgaag gagagtgcag aaaaatccga gcgtgagaaa caagaattag aacagaaatt
     2461 agaggaaaca aaggcaacca ctgttgttca aaatatcaca tacaatatcc aagatagcgc
     2521 aatcgctgga gacatacacc ctggcctcaa agagcaagat gagttgtaat ctggtttgtc
     2581 cgaagagtca ttatgtcaga gacacccacc ccgaaataat gcccttctgc cgagattgtg
     2641 gtaaggaagt gatggaagag tggaatttgt gcccattctg tggttctgag ctgtccaatt
     2701 cggaaaataa tggtggcgat tcacagtcca caagcaactc tggaattgat tttaccgatt
     2761 ccgcaatgtc cggagacatc caccacacta tcatcaacaa tgatgtcgaa gctgtgacta
     2821 atgcagttct tatagctcta gatcgtcttg gcgttgtcaa tagtgagcct tcagtgaatg
     2881 ctcctgcaga actagttcct cctgaaatgg ctgcactctc agttggagag ggagtcgatt
     2941 actacagccc cacaaacaat cgctggttag atgcctgcga agtgattgct gtcaatgatg
     3001 atggcacata tgatgttaca gtcccaaaga cgggtcagat tgagacgaag tatggtgtcg
     3061 taatcggaga ttcgcccggc acgattcgac cagcaatacc tctcttttca gagggagatc
     3121 gtgtcctcgg aaactggcga aacgcgggat cattctacat gggtaccatc gtagacatca
     3181 actcggatgg aacttacgat atccagtatg atgatggtga tgctgaactc aaggttgacc
     3241 agagtcgtat ctttcacgca ccacagttcg atgttggaga tcgtgtattt gcaaactgga
     3301 aagcacatgg atactacttc ccaggccaca tcggagctat tcatccagac cacacaatgc
     3361 gcatcgatta tgatgatgga gatgtagagg atgatgtccc tctgtccaga attcgaatca
     3421 ttccggatga tgatactcaa atgcaggatt acgctgaatc cttgtcagag gctgaaaagg
     3481 aaatattgga tgcattccgg gtctttgatc cagatgaatc aggaactatt tctgctgctg
     3541 aactatttcg tatccttacc gcaatcggcg acgatcccat cgatgtcgat gaagtacacg
     3601 agttgttcaa tgaacttgga attagtatgg aggcggaact cgattaccgc caactagcga
     3661 aatggcttgt cagccactaa atttcattcc tcttcatctg aaccagcaag gaacacatga
     3721 gatagtgagc ccatccaaat gagttgagaa cttatcagaa gatgctcact aaacgccaag
     3781 ataccctctg tcttgtttgg gaatattgct ggtgacacaa tcctcaactc atacagatcg
     3841 agataccata acgacaggat gaaacagatt gtcatagcaa tcatcgacca acgctgacca
     3901 atctccgaaa tcggaagccc cgcctctcga cgagaaattg tctcccaacg tactaacggg
     3961 tggccgaaca acgcaccaag cgcagtagac acaaagaaag cgtatcccag cgtgatatgg
     4021 agcgaacggt cgaagtgacg agagaacatc aaatccgctg aaatcgagaa tgccagcatg
     4081 aacatcaaaa caagccagat tgtgagtaca acctttcgac ctggagaatt gaatacagga
     4141 ttattccacc aacgatgaat ccctatgaat gcagtaatca ttgctaggaa tgcaacagtg
     4201 ttgaaaccaa tccaaatgac atacttcatc ggtgcatagg ccactagaat actcatcgta
     4261 gtatattgtt cgtggaaact ctcagtccag tgacatggac agataacacc tgaatataca
     4321 tcattcgaga acggggctaa acctaccgag accaatatcg tagatattcc taatatcatt
     4381 ccagccctag gtgcaagaag tagcatcgta ggagagattt tttttgaaag aaaacgatga
     4441 tgtggcgatg ttacgaaatg ccccacggcc agcgcaatga ggctcaaagc cacgagaata
     4501 gaccagcgta tgagttcctg ttccggactc gcatctcctg caggtggcaa tgtagccata
     4561 gaatcgaagt ccggggtaga cctcataatc ctcgctaaag aaaaactgag aactcaatca
     4621 tctgctggtc ttccgcccac gacgaaacct cggtagcgat gcatatactc gacaaaaata
     4681 gggctcaaag ccatggaggc gagatgttca gtagtaaatg gaggccgcgt tggtgcaaaa
     4741 ttcggatcca tgaggcccaa tggccaatct ggatgagcaa tcccaacttt accgacaccg
     4801 acgagatccg ccccctcatt catcacaaat cgtacatctg cggctgtcca gatactccct
     4861 gtagaaataa gggggaactc tgttggaatg acttcgcgga aacgacttgt gagtgtacgt
     4921 gaatctgtaa gatctgtttc tgaacccttg aacacatccc agcaagaaat gtggagtgcg
     4981 tcaatttcag tatcaactaa tcgacgagct agttccaaac tctcatcaag atgtataccc
     5041 aaatctacaa tctcaggtga tatacgtaca acaacgagga aattcggact tgttcgatct
     5101 cgaactgcct gaatgatacg cataaggaaa cgagaacgtc cagtcaaatc accgccccat
     5161 tcatcacctc tacggtttgt ctcagtgcca aggaactgag cgatgagata accatgagct
     5221 ccatgaatct caacaccgtc catacccgcc ttgtcacacc tctcggcagc agtcgcgaat
     5281 gcctcaattg tctcttcaat ctcaagaacg gtcatttctc gggctggttt gtttcccgtc
     5341 ttaggctcat gatttatgct agcagagata ggaatggtgc caattagatc ggcaggtgcc
     5401 cgcatccctc catggaagat ttgaacgagg ctcaaagcgc ctcgattccg aagttcatcg
     5461 gctaatcgag ttaatcccgg aatctgatga tctccccaaa cacccatttc tccaggccaa
     5521 ccctgaccat tctccattac atgagatgca gcggtagtaa tgatgccgaa tcccccttca
     5581 gcacgacgga gaagaaaggc aatctcctca tcagaaagtg taccgtcttt gttagactgc
     5641 ttgttcgtca gagcagcgag taccgtacag ttacggaccc ttgctctatt actagggaat
     5701 gcccatgcct ccaccgggtc cataggtagc ggtctgtgtt ctctatgatg aattgtggtc
     5761 cgagctcccg gacttgaacc ggggaccccc tgatggctgc ctgttgccgt ggtattcgtc
     5821 tacagtcagg tgctctagcc aactgagcta agctcggatg gttctggcga gcatgctgga
     5881 cttcatatcc gtttccgctt gaatggatgt gaagaaatgg gttgaaaaag tcactaaaga
     5941 ggtgtattag accactcaac ttcaagtatg gttccaagtc gtcactcgtt ccggagggca
     6001 agtacctccg gatgggaatc gacatggaca ctacagcaga tgcgccctac ggcgacatca
     6061 ttgacgcggt caaacgtgac ctcggcgtaa gcggtggaca aggcctccca accgccctca
     6121 tggatgagga actcgcagga tttggcgttc caaacccgag gattctcatc tgtggatgtg
     6181 gcggatcagg taacaacacg atgaatcgga ttgtgcatct tggtgtcgaa ggtgcaacca
     6241 ctgtcgcaat caataccgac aagcaacatc tcgatcatac gcgtgcaatg cagaagctgc
     6301 ttgtcggtcg tcatatcact cgtggtcttg gcgcaggcgg taaccctgag atggggcgtc
     6361 gctgtgcaga agcaggacga gatgtaatca gcaagatagt tcagggtgct gatctcgtat
     6421 tcattactgc aggacttgga ggaggtaccg gaactggtat cgctccggtc gtcgctgaag
     6481 aagcaaaacg taacggcgca ctcgttgttg gtatcgtcac tactcccttc caggttgagc
     6541 gacgtcaacg catgaagcgc gcactcgaag ggctcgcgaa cctacgcaac caagcagatg
     6601 ctgtcctcgt tctagacaac aatcgtcttc tccactatgt gccaaaccta cctcttgatg
     6661 aggcattcag catcatggat caactcatcg cggagattgt caagggtatc gtcgagacca
     6721 ttacactccc gagcctgatc aatctcgact tcgctgacgt tcgaaccatc atgaaaaatg
     6781 gcggcgttac catgatgctc tatggggaga gtgatcgcgg ccccgaagag gtagtccacg
     6841 aatcactcaa tcacccacta cttgacatct caatcgatgg agcaactgga gcgttgattc
     6901 atgtcacagg tggagcacat atgactctcg agcaggcgaa ccaagtatgc gaactcatga
     6961 cgaatcggct ttcttcagaa gcacacgtca tcttcggtgc acgtcaagca ccagaattcg
     7021 gtgacacaat caaggtcatg gcaatcatca caggagttgg atcagaacga cttcagcagg
     7081 cgaatgtatc ggccgatata ctcggtgaag cactcaatat tgcacgaaga ggcgaagctg
     7141 gaagtcgatt cggattccag cgctttgact gacaatacga agaaagcctc aaaccgaacg
     7201 gtatggaggg gttcacatgc gccgaacgac cctcgttcct gctgcactca cacttgcgct
     7261 gctaatgttg acctcttctg ccgtcaccgc tggaggcgat gtaaccgtca tgcaaggtgc
     7321 cgtgaacaca gaacagccaa ctgctgaaaa caacaccttc aacatcttcg gaaggccgaa
     7381 tgcggagcct tgctggggtc acttcaacaa tacagatgct gacaattcca acaacggcta
     7441 cggagagaag actgggtcag gaagtagtgt tgtcgagatt gattggcact gtcgtatgga
     7501 cccggttctt caggatacat ttgctctgaa agaaggtgac aatattgagg ttcatctcgc
     7561 tcttgacatc actggagatg caaattgcca aggccaatgt gagaatctga atgttagtct
     7621 aatgcgaggt tctgttgctg cagtaactca ggaattcaat gctggtgaag gtgaaagtat
     7681 catgattgat tgggttattc ctgtaacccc tgatctagtc ccttggaatc ggactgatga
     7741 caatccagga atcaagatca catgggcagg gcaaggacaa caagggaact ttatcttctc
     7801 tgggcaaccg gctgaattca gactctacta tactcaccca tgccacagcg acaccacggc
     7861 tccacaggaa gcgaactgta attcagacac tgaaaagccc gcgaaccaca acagcactgt
     7921 gaccttccca attctcaatc aaacagaagc cgatcaagtt ctcgacactg gcggtgccga
     7981 tgaagaggag acacccggct tcggtgcagt cgtcggtctt ggtggtctcg cagctgcagc
     8041 ttggatgcgc ggtggacgcg aagaagacga gtgattactc gctctcattt acgtcgtcac
     8101 tcggcgggaa cgcaatgaag cgtagcgcaa ggaatgcgat gactcctact aatgccgtgt
     8161 taatgtacca cgaaccatac tcaacaagaa ctggattgag atcgccacta tcccatactt
     8221 cagcaatgaa atgatggaaa taactcgcaa tggtaatcga tgccccgtag atgattagag
     8281 tcagcgttag gctgcgtgcg tacggactcg aagattggaa cgttaccctg cgatgaagat
     8341 aatgcgcaac gatgcaactc ataccctcag aaagccagaa tgcgaagcct agagtatagg
     8401 ctggccaggg atcaagaatg acgaaaatct cgtacagaat gaggcatacg aggacattga
     8461 atgcacccac aacagcaaat cgtgccatct cacggaatag acgactcaag gaataatcga
     8521 gcatctattc accaatctgt gccgtcccat gggtcgagtt ctggtgcggg ctcaaccgct
     8581 aaggacttca cttcttccgc gtgaggcaag gaatccttcg gcatctcaat ggcaatgggt
     8641 ccaagttcag gaagaatgaa ttcttcttcg acctctggaa gggattccaa catagcttcg
     8701 atctgcggaa tatcagcatc ctctggcatt tcaatcggta ggttctcctc tgattcagtc
     8761 accacacgtg tatctgaatc tgctattgag tgcgataact cggtgtttac tccaagttgg
     8821 ccaaacgctg cagataccgt agatgttgca acgggttcgg gtcctttcct acgacgtaac
     8881 tgaatctcaa gagcggcttg acgtgcttct tcttcacgga gtttcatctc ctcaatctca
     8941 aaagcaagac gaatatcatg ctccttcttc cggcgatcca tctcttcctt ggccgctgca
     9001 cttggacgat cccataacct ccagaaatag tagaagatag ggacaagaat gagagatatt
     9061 agcgccgcga cgcccaccca ctgtcttgga gtgagtgcca tgaccaaagg acggcctcct
     9121 atcacaaaaa gagagaggaa tagatgacga atcaaatcca gttcgctaga gtagaagcga
     9181 tatgtggagg gacatcgctt gcaacgaggc cagggccacg ctctagagcg gttgcattac
     9241 cagcttcacg gagaagagct gaggcaaggc gtgcagcagg ccaaggggcc attccttgag
     9301 ctagaagtcc cccacagata ccggccagaa gatctccagt tccaccaact gccattctcg
     9361 ggttcccacc cgtccccaat gcaccgcgac tctggggtcc aaacaggcga tctacgggcc
     9421 cagtaagaag aacaacacgc gcttcaggat catctgcttg atcgagttcg ttacgaatgg
     9481 ctgcaggttc gggtccaatc cattcctctg cctcacgtga atgcggtgtg atgattccaa
     9541 ccatgcccgc aggccatcgg cccttgggga gtacagaaat tgcatctgcg tcaattacaa
     9601 ctggaaccga ttcttcaact gccacctcaa tcaagcgttc gactgctttc gatacttctt
     9661 ctcctcgacc gagacctggt ccgataacca tcgcttgcac accacgcccg gaaagaactc
     9721 gaccaagcaa atgctcaaca gaatcgaggg ttagactaac ctcatcagga atagattctg
     9781 gaataagatg agggggccat tccgccctcg aacgagcctc ggaaggcatc gctacatgaa
     9841 caaggtcaca accagaacga gctgctgcgt ccccggcgag gattggagcc ccgtgatatg
     9901 gaccaccacc cacgattagg aggcggcctc gatcaccttt cctcgcatcc gggttaagtg
     9961 gaggatagcg caaggcatcc cctgggccac aatctaggac ttcgtcgggc cacggtaagg
    10021 gtgcaactcg aaggtgccca atcgtgggga ttatcgtacc catcgcatca cgcatcccga
    10081 ttttttctgc atggaaagtt acggtagaag ttgcagaaag tactgcatcg gtgccaaatc
    10141 cagttggaag atcgcaagca ataacattga cactggcaga atatggtcga gtccattcaa
    10201 gaagttcaga aacatctcca cgtggtacag aaccaaccgc acctgcacca agcaaagaat
    10261 cgatgatagc acgtggtttc gattcaagcg gtaccatcgg ccaaacatca atcggaagtg
    10321 aggcttctcg acatgcatta cggaaagatt ctgctgactc tcccttctga gtcacatgtg
    10381 atgcaataag gcgaactgag tgcccggatt cgtgtaagga taacgctgca gcgaatccat
    10441 caccaccgtt gttccctgaa ccacaaagaa tccaaatttc acgatgctcc ggagcctcgg
    10501 aggcttcaac gatacgtacc gtctccgcag ctagggcctg ccccgcagcc tgcatcaaat
    10561 cctggatgga aacatcgaga tgacgagcat tcgcatcgaa tacttccacc tcatccggat
    10621 gcattgccca attggccatg cttcacccaa tcggttacag aacatcacgg ttcgtgttct
    10681 aagcgagttc tgcgacaaga actcggtcct taccgctacc atctccgtcg agatctccgc
    10741 ccgtccaaat atcacctact tggagaatca tgtcatcctc tccaccaggt aatgtgtcaa
    10801 ttgggacttc ggcaccctct ggcacatttc gatagagtgg tcgactgact agccaacgat
    10861 tgagaagaat gaacaccgcc gctgtgaaac cccagaacaa gagaacgata ctaattccct
    10921 tcggatttcc aggattccac gggtcatcta cattgaagat gacatcgatg aagtaagacc
    10981 ccatcaatac agtgaacata atcgggaatc caagatacat gatgtaatcc caccactttc
    11041 caatccacca gtcgttgtcg ccggtattga tgaaatcgtc acggaaagaa gaaacaccat
    11101 tatccaagta atctcggaaa tcgaagcctt cgatatcatt ctcatcctgc caaaccttgt
    11161 agcgattcca accatacttc cagattgaaa acgcgatgaa cagaccactg aacatcaggc
    11221 cgtaacccca tatgtgatcc tgaacctcaa ggaattgtgg gaaagccaca cctgtagatt
    11281 cgtccatgag aatccagagg gctgcactag gtatgccaaa gaggaagaga gcacctccag
    11341 tgaaaccaac tgcttgacta cgctcaacac cgtggtcaac gaagtttctc acacatagtt
    11401 cgaccgtaga gatcatcgat gttagcgcag caaatgaaag agcgaggaag aacatcgtca
    11461 ccatggcaag ctggacaatt ggcccaccag gtgcttgagc gaaaacctcg gg
//
LOCUS       DUKB01000131            3547 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_376459, whole genome shotgun sequence.
ACCESSION   DUKB01000131 DUKB01000000
VERSION     DUKB01000131.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_376459"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2077
                     /locus_tag="HA345_04420"
     CDS             <1..2077
                     /locus_tag="HA345_04420"
                     /inference="COORDINATES: protein motif:HMM:TIGR01701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FdhF/YdeP family oxidoreductase"
                     /protein_id="HIH84635.1"
                     /translation="PGCAWPDPDDHRSGFEFCENGAKAFAAESTSRRVTADLFTTYSV
                     SSLSEQGDMWMDKQGRLTQPMYLAEGDEHYQAITWESAFTLISERIKATDAEKVALYT
                     SGRASNEAAFLWGTLARQIGTNNLPDCSNMCHESSGVALNTSIGIGKGTVKLEDFDYA
                     DLVLVVGQNPGTNHPRMLSALARCKRKGGSVISINPLEETGMKRFKHPQEMLRMLGTG
                     TTIADDHVPVRINGDSALFKGIAKHLIENNAVDSSFIDRHTIGFDDFVSHLTDVHWND
                     IERVSGLTEERIREIARIIAQSKRMIICWAMGITQHRNSVQTIHDIVNVLLLGGHFGR
                     KGAGACPVRGHSNVQGDRTVGINHHPSESFLAALDEATGIESPRERGVDSVQLIQRSL
                     EDKFDVLLCLGGNLLSAMSDTEVTAQALNRIGLTVQISTKLNRSHVVTGKEALILPCL
                     GRTEEDTGRTGNRFVTVENSMGVVHSSRGTMKPASNQLMSEPDIVAHIGNALFGSSPI
                     QWSNLAEDYDRIRSLIEDVIPGFDDYNARVRQDGGFYLPNGPRDGPVWNTPNSKAVMH
                     SHPLDSFEVEDGYTMMTIRSHDQYNTTIYGMDDRYRGIKNARRIVFMNPEDMEKDGII
                     SQQEVNLISIHDGIERRAEQWKVIPYSIPKGNIATYFPEANVLIPLESVAIGSNTPTS
                     KSVHVRIES"
     gene            complement(2074..>3547)
                     /locus_tag="HA345_04425"
     CDS             complement(2074..>3547)
                     /locus_tag="HA345_04425"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024574.1,HMM:NF024579.1,HMM:NF024816.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020144301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH84636.1"
                     /translation="YKILGASYALENRVDEAITSFTDGLNLDNADAPGWYNLGRLHLR
                     NGHHDAGATCFTAAQMVDPNHIPSARSLVEHYKETEDRTRLIPLWIHLSTLEELGEDA
                     HELASILVEIGEGENLMIETHPELPIMIPEGPELARKAVDLLGSEESEMKARALSLTG
                     EHPEAIRISKSILESDPTQSESWRLMARILESAGEIDRAQQCRKKAELIGGSIEEEVS
                     TPSVIVEDSPILTVESEPLLTVSDDDPWAALTEDSPVEEVSVPVISSEPVVEPEPVVE
                     PDPVVEPEPVIEVEPSVVPAGLGDSQQDLLLTPVTPNTESDDSANGVLQESVMVDLSQ
                     VASDAASKAGGASSQTSMTMEGAIEWYNKALFLMEDKKYKEALSCFDKALPASAEDED
                     LAIRIINGRGHAYYYLEEYPEAIKAYFEAMRINKDKVTGATLYNMGTAYANVELYDDA
                     VKCFKQAMPRGLDGEQKKMCKEQIRRCNELLKIQKRKMGR"
BASE COUNT          996 a          859 c          809 g          883 t
ORIGIN      
        1 ccctggttgc gcatggccag atccggatga tcatcgaagt ggctttgagt tctgtgaaaa
       61 tggtgcgaag gcctttgctg ctgaatcaac ctctcgaaga gtaactgccg atttattcac
      121 tacatattca gtatcatccc tctctgaaca aggcgatatg tggatggata agcagggtcg
      181 ccttactcaa ccgatgtatc tcgctgaagg cgatgaacac tatcaagcga ttacatggga
      241 atctgcattt acacttatct cagagcgaat taaggcaaca gatgcggaaa aggtcgcgct
      301 atacacctcc ggtcgagcat ctaatgaagc cgcatttctg tgggggactc ttgcacgtca
      361 aattggaact aacaacctcc cagattgctc caatatgtgc catgagagca gtggagtcgc
      421 actcaacacc tcaattggaa taggaaaagg gactgtgaaa ctcgaagact tcgattacgc
      481 tgaccttgtc ctagttgttg gtcagaatcc tggaacgaat cacccgagga tgctctcagc
      541 attggctaga tgcaaacgta agggtggctc tgtaatcagc atcaatcctt tggaagagac
      601 gggaatgaaa cgattcaaac acccacagga gatgctacgg atgcttggca caggtaccac
      661 aatcgcagat gatcatgtcc cagtccgtat caatggtgat tccgcattat tcaaggggat
      721 tgcaaaacac ctaatcgaga acaatgctgt cgattcatca tttattgaca gacataccat
      781 tggtttcgat gatttcgttt ctcatctaac agatgtccat tggaatgaca tagaacgtgt
      841 ctctggcctt acagaagaaa gaattcggga gattgcaagg attatcgctc aatcgaagag
      901 gatgatcata tgctgggcta tgggaatcac tcaacatcgc aactctgtcc aaacaattca
      961 cgatattgtc aatgtgctcc tactgggtgg ccactttggc cgcaagggtg ccggagcctg
     1021 tcctgtccgt ggacatagta atgtccaggg agatcggacc gttggcatca accatcaccc
     1081 ttcagaatca ttcctcgctg cactcgatga agctacgggc atcgaatctc cacgtgaaag
     1141 aggtgttgat agtgttcaat tgatacaacg ttcgcttgaa gataaattcg atgtcttact
     1201 ctgtcttggc ggcaatcttt tgtcagcaat gtcggacacc gaagtgactg cacaagcact
     1261 caaccgtatc ggattaactg tccagatatc gacaaaattg aacagaagtc atgtcgttac
     1321 tgggaaagaa gcactcatcc taccttgcct aggacggact gaagaggaca cgggacgaac
     1381 tggaaaccga tttgtcacag tagagaacag catgggagtt gtacacagca gcagaggcac
     1441 gatgaaacca gcctctaatc aattgatgag tgaaccggat atcgttgcac acatcggaaa
     1501 cgccctattt ggatcatcac ctattcaatg gtcaaatctt gcagaggact acgatagaat
     1561 cagatcctta atcgaagatg tcattccagg atttgacgat tataacgccc gagtacgaca
     1621 agacggaggt ttctacctac ccaatgggcc acgtgatgga cccgtatgga acacacccaa
     1681 tagtaaggca gttatgcatt cacatccctt ggactccttc gaagtagaag atggatacac
     1741 aatgatgact atcaggagtc acgatcagta caatacaacc atctatggca tggatgaccg
     1801 ttacagagga atcaagaacg cgcgacgcat cgtcttcatg aatccagaag atatggagaa
     1861 agacggcatc atatctcaac aagaagtcaa tctgatttca attcatgatg gcattgaaag
     1921 acgagctgaa caatggaaag tcatcccata ttcaatccca aaagggaata ttgcaacata
     1981 cttccctgag gctaatgtcc tgattccatt ggaatcagtc gcaatcggga gtaatacacc
     2041 cacatcaaaa tcggttcatg tgaggattga atcctaacga cccatcttcc gcttctgaat
     2101 cttcagaagc tcattacagc gccgtatctg ttccttgcac atcttcttct gttcaccatc
     2161 taatccacga ggcatagcct gcttgaagca tttcacagca tcatcataga gttcgacatt
     2221 ggcatatgca gtacccatat tgtagagtgt cgcaccagtg accttatcct tgttgatacg
     2281 catagcctca aagtatgcct taatcgcttc aggatattcc tcaaggtagt aatatgcatg
     2341 acctcggcca ttgatgatcc gaatagccaa atcctcatct tcagcagaag caggaagagc
     2401 cttatcgaaa caagagagag cctccttgta cttcttgtcc tccatcagga agagtgcctt
     2461 gttgtaccat tcaatggccc cctccatcgt catcgatgtt tgactggatg ctccgcctgc
     2521 tttagatgcg gcatcggatg caacctgaga aaggtcgacc atgacgctct cttgaagcac
     2581 tccattcgca gaatcatcgg attcagtatt cggagtaact ggagtcaaca gaagatcctg
     2641 ttggctatca cctaatcctg caggaactac agatggttct acttcgatta caggctccgg
     2701 ctcgactacg ggatctggct cgactacagg ctccggctcg actacgggct ccgatgaaat
     2761 tactggcaca gatacttcct caacaggcga gtcctccgtg agagccgccc aaggatcatc
     2821 atcagaaacg gttagcaaag gttctgattc gacagttaga attggactat cttcgacgat
     2881 aacagaagga gtgcttacct cctcttcgat actaccacct atcagttcag ccttcttacg
     2941 gcattgttga gcacggtcaa tctctcctgc agattcaagg attcgcgcca tcaaacgcca
     3001 gctctcagat tgagtaggat ctgattcgag aattgactta gaaatacgga ttgcctcagg
     3061 atgttcgcct gtgagagaaa gtgctctagc cttcatttcg gattcctctg aacccaacaa
     3121 atcaaccgct tttcgagcaa gttcagggcc ttcaggaatc ataatcggta gttcggggtg
     3181 agtttcaatc atgaggttct caccttctcc aatctcgaca aggatagatg caagttcgtg
     3241 ggcatcctcc ccaagctcct caagcgtaga aagatgaatc cacagaggaa tcaaacgtgt
     3301 ccgatcttct gtctctttgt agtgctcgac aagtgaacgc gcagaaggaa tatggttggg
     3361 atcaaccatc tgagcagctg taaagcaggt agctccagca tcatggtgcc cgtttctcag
     3421 atgtagccgg cctaggttat accaccctgg ggcatcggca ttatcgagat taaggccatc
     3481 agtgaatgag gttatagctt catcaacacg attctcaagt gcataggagg caccaagaat
     3541 cttgtac
//
LOCUS       DUKB01000132            4820 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_72401, whole genome shotgun sequence.
ACCESSION   DUKB01000132 DUKB01000000
VERSION     DUKB01000132.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4820)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_72401"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="HA345_04430"
     CDS             <1..396
                     /locus_tag="HA345_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84637.1"
                     /translation="QRRAAEEEIAPVEEPEPVEDTGAPIDATELIARMGEARFMSEKK
                     RITQELEGRSTEFSATIDRIRNRKDRNGMMEVEIIAEEEHFILSVPVEGRSIPKSLES
                     GKGKIYIRGKVNGFHMARNAIIILAHDVE"
     gene            447..4040
                     /locus_tag="HA345_04435"
     CDS             447..4040
                     /locus_tag="HA345_04435"
                     /inference="COORDINATES: protein motif:HMM:NF014466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84638.1"
                     /translation="MSRTQSMALAILMLLGISLAPLLIQSTDNTAQHGLSEIEDTRFS
                     PGATTDFTLMYTQSSGVQGGPGSEHWVKVNDVIVDSNDDIYAVGAFANNVTIGSSDWD
                     EDWRTGFIAKFDDQGNSIWELMIEGPPSSYHPASEIMSIDVDNAGRVFVGGMMCGTAT
                     FTSASSCGWNTNWAGFVAKVSPQGIWEWGVSIDGSSGTEVVNDVAIRSDGHVYAVGEM
                     RTSAFFEAVSYNTSGRIDGFVTLVDTINFDFDWVRFIGSQSHTEYDNATSVMVDSVDN
                     AIVTGTYSDNSGNTFGTSIIMPVGRPNAAYVLNLSSTNTINWVAGAGGSANVEPVYAH
                     TIIDGGDGHYYVAGSMGGVTTFDSAATQGQVSLVANGTSEHAFIAQMGTDGAWNYARR
                     SDSPDGFSNWAHQTVHSIAMGQNGMLIATGQFDSPNTHPISEATFGSTRILDSYMGGF
                     LVGFNTQTATFAWAKSFGSGGDNVRGNGVSILSDGRIVTGIHACPSGPCYVTIDGVQT
                     NMVGFEGGGGFVWTSFPDSDSDGVADKDDNCDLISNPTQDDIDADNLGDACDPDIDGD
                     AIINVNDNCDKGAVNWDSSVWMNDRDGDGCRDSDEDSDDDGDGVDDSIDTCSSATHEH
                     NWTSSPASDYDADGCKDTSEDDDDDADTVTDILDQCASNPSWKNWTSNANTDHDGDGC
                     KDEGEDMDDDNDQRPDDEDSCQTGLTGWTSEVAFDYDLDGCRDSDEDLDDDNDLIPDV
                     TDDCNPPGANGWTSVSETDHDGDGCRDADEDSDDDNDGIPDEQDTCPKGQTNWIGNDL
                     TFDNDGDGCKDTGAQNDGYGEDIDDDGDQILDVADSCPSGEVGWTSNFGNDFDRDGCK
                     DDTEDEDDDGDGFLEENGEDKCPLTTLGEPVDLNGCAPNQGDSDGDGLTDEEDQCPDE
                     DARGFDDNLDGCIDDTDSDGINDAEDLCLDTPADESGTVEQQADGCTITERDLDGDGV
                     KGDEDSENGFDICPSTPPDAEVDNFGCSADQQLELIDSDEDGINDLIELNWLESSGYD
                     CSATIESDVDENGCGFSQLDADNDGIQNIDDICPGTPNLFSVDEDGCSISQKQDLATD
                     GGGMDPIFVAAIIIVAALLLGSVGVAVVIRSRNKPKPRKKKARPKAATTAPAPGAFAE
                     EAAEALAPEPTPLPELLGHTTDEDGVEWAKDASGNWYWRNDAESTFALYES"
     gene            4099..>4820
                     /locus_tag="HA345_04440"
     CDS             4099..>4820
                     /locus_tag="HA345_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84639.1"
                     /translation="MALSERFLVLTLTAILLGMISAPGISHPEPLEPAVSEISVGTRA
                     GTTEWTAVAGYPSSPPTSPSIGVAAGYISPTSVAVDTLGNVYNGGFVIYDVSFGSQAY
                     SSVEQMAYVAKTSSTGTWQKLYYTGFFDGGGSATVTAITTSGTDVYACGWFVGNVTIG
                     PQSFQSYTPSGSVESSQDIWVAKFDQNLNPLWAKQAGTVENDDACEDILVSPTNPDGS
                     KDVYIIGETNATAQAYFGTSITR"
BASE COUNT         1338 a         1077 c         1280 g         1125 t
ORIGIN      
        1 cagcgtagag cggcagaaga agaaattgct cctgttgagg aaccagaacc cgtagaagat
       61 actggcgccc ctatcgatgc aacggaacta attgcccgca tgggagaagc gagattcatg
      121 tccgaaaaga agcgtatcac tcaggaacta gagggacgta gtactgagtt ctctgccacc
      181 atcgaccgaa tccgaaaccg taaggatcgt aatggtatga tggaagttga aatcatcgct
      241 gaggaggagc atttcatcct aagcgtccct gtcgaaggaa ggagcattcc caaatcactg
      301 gaatccggaa aggggaagat atacatcagg ggaaaggtga atggattcca catggcaagg
      361 aatgcaataa tcatcctagc ccatgatgtc gaataacgtt caaacagcgg atgggtctat
      421 caatcggttc ttatcaggtg tatttcatgt cccgtacgca gagcatggcg ctggctattc
      481 tcatgctcct tggcatctct ctagcaccct tgttgataca atcaacagat aacacggcac
      541 agcatggtct ttcagagata gaagatactc gattcagccc aggtgcaacc acggatttca
      601 cactcatgta cacgcaatct tctggcgtcc aaggaggccc aggttcagaa cattgggtga
      661 aagtaaacga tgtcattgta gacagcaatg atgacatcta cgcagtaggt gcttttgcaa
      721 acaacgtgac cattggatca agcgactggg acgaggattg gaggactgga ttcattgcga
      781 aattcgatga tcagggcaac tcaatctggg agcttatgat tgaaggacct ccgagttcct
      841 atcaccctgc atctgaaatc atgagtatcg atgtcgacaa tgccggacgg gtctttgttg
      901 gaggtatgat gtgtggtact gcaacattca cttcagcatc atcttgtgga tggaatacaa
      961 actgggctgg cttcgttgcc aaagtttccc ctcagggtat ctgggaatgg ggagtctcaa
     1021 tcgacgggtc ctcagggacg gaagtagtga atgatgtcgc aatcaggtct gacgggcacg
     1081 tgtatgctgt tggtgaaatg cgaacttccg ctttctttga ggctgtatcg tacaacacgt
     1141 ctggtagaat agatggattc gtcacacttg tggacaccat caatttcgac tttgattggg
     1201 tccgattcat tggaagtcag tcccacaccg aatacgataa cgcaacttct gtcatggtcg
     1261 attctgtaga caacgcaatt gttacaggaa cctattctga caactcagga aatacatttg
     1321 gaacttcaat tatcatgccc gtcggccgtc cgaatgcggc ctatgtactg aatctctcat
     1381 ccactaacac aatcaattgg gttgcaggag cgggagggag tgcgaacgtg gaaccagtat
     1441 atgcgcatac gattatcgat ggaggagatg ggcattatta cgtcgctgga tcgatggggg
     1501 gtgtcacaac tttcgatagc gctgcgactc aaggccaagt atctctcgta gccaatggaa
     1561 ctagcgaaca cgcattcatc gcacagatgg gtacagatgg agcttggaat tatgcacgac
     1621 gttctgatag cccggatggc ttcagcaact gggcccatca aacagttcac tcgattgcaa
     1681 tgggtcaaaa cgggatgttg attgcaacag ggcaattcga ctcaccaaac actcatccaa
     1741 tcagtgaggc aaccttcgga agcacgcgaa ttctagatag ttacatggga ggattcctcg
     1801 ttggattcaa tactcaaaca gccacctttg catgggctaa atcgtttgga tcaggtggcg
     1861 acaatgttcg tggaaatggt gtatcaattc tatctgatgg ccgaattgtc actggaattc
     1921 acgcctgtcc aagcggtcca tgctacgtga ctatcgatgg agtgcagacc aacatggttg
     1981 gatttgaagg aggaggagga tttgtctgga cctcattccc tgattcggat tctgatggcg
     2041 tcgcggacaa ggacgacaac tgcgacttaa tttcaaaccc aactcaagat gacattgatg
     2101 ctgacaatct tggagacgct tgtgaccctg acatcgacgg tgatgcaatt atcaacgtaa
     2161 acgacaactg cgacaaaggt gcagtgaatt gggactcaag tgtatggatg aatgaccgag
     2221 acggggacgg ttgccgtgat tcagacgagg attcagatga tgacggcgat ggtgttgatg
     2281 attcaatcga tacatgctcc tccgctacac acgaacacaa ctggactagt tctcctgcct
     2341 cagattacga tgcggatggc tgtaaagata catccgaaga tgatgatgat gatgcagata
     2401 ctgtcaccga tatacttgac caatgtgcat cgaatccgtc ttggaagaac tggactagta
     2461 atgcaaacac cgaccacgat ggcgatggat gcaaggatga gggagaggac atggatgatg
     2521 acaatgatca gcgacctgac gacgaagatt catgtcagac cggccttaca gggtggactt
     2581 ccgaagtagc tttcgactac gatcttgatg gatgtcgcga ctctgatgaa gatctagacg
     2641 atgacaacga tttgattcct gatgtcacag acgactgtaa cccccccggc gctaatggat
     2701 ggactagtgt ctcagagacc gatcacgatg gcgacggttg tcgagatgca gatgaagata
     2761 gtgatgacga taacgatggg attcctgacg aacaagatac ctgcccgaag ggccaaacta
     2821 actggattgg taatgaccta actttcgaca atgatggtga tggttgcaag gacacaggtg
     2881 cacaaaacga cggttacgga gaggatattg acgatgacgg tgatcaaatc ctcgatgtcg
     2941 cagattcctg cccctctggt gaggttggtt ggacctcgaa ctttggaaat gacttcgatc
     3001 gagatggatg caaggatgat actgaggatg aagatgatga cggcgatggc ttccttgaag
     3061 agaatggtga ggacaagtgc cccctcacta cacttggaga acctgtagac ctgaacggtt
     3121 gcgctccaaa ccaaggagat agcgatggcg acggtctcac cgatgaagaa gatcaatgcc
     3181 cagatgaaga tgcacgagga ttcgatgaca acctcgatgg ttgtatcgac gatacagaca
     3241 gcgatggtat caacgacgcc gaggacctct gcctagatac tccagccgac gagtcgggaa
     3301 cagtcgaaca acaggctgac ggctgcacaa tcacagaacg tgatttggat ggagatggag
     3361 tcaaaggtga cgaagattca gagaatggat ttgatatctg cccatcaact ccacctgatg
     3421 ctgaagtcga caatttcgga tgttcagcag atcaacaact tgagttgatt gattctgacg
     3481 aagatggtat caatgatcta atcgaattga attggcttga gagttcagga tatgattgca
     3541 gtgcgacaat cgagagcgat gtagatgaga acggttgtgg attcagccaa cttgatgccg
     3601 ataacgatgg catccagaac atagacgata tctgtccagg aacacctaat ctcttcagtg
     3661 tggatgagga tggttgctca atcagtcaaa aacaggacct agcaacagat gggggaggca
     3721 tggatccaat cttcgttgca gcgattatta ttgtcgcagc acttctgctc ggatcggtag
     3781 gcgttgcagt ggtaattcgc tctcgcaaca agcctaagcc acgaaagaag aaagcgcgac
     3841 caaaggctgc aaccactgct cccgcacctg gagcattcgc cgaagaagca gcagaagctc
     3901 tcgctcctga accaactcct ctgcccgaac ttttaggcca cactacagat gaagacggcg
     3961 tagaatgggc aaaggatgca agtggaaact ggtattggcg gaatgatgct gaatccacgt
     4021 ttgcactgta tgaatcctga ttcagatcgg cgcaccttgg agccgagggt tgaagtgcgt
     4081 gatatgcgac ccttacgcat ggcactcagt gaacgcttcc tcgtcctgac cttgaccgcc
     4141 attctcttag gaatgattag tgcaccagga atctcccatc cggagcccct tgaacccgct
     4201 gtatctgaga tatcagtcgg aactagagca ggcactacag agtggactgc tgttgcagga
     4261 tacccctcta gtccgcccac ctctccttcg atcggcgtag cagcgggata catctcgcct
     4321 actagcgtag cagtggacac actcggaaac gtctacaacg gtggatttgt gatttatgat
     4381 gtgagttttg gaagccaggc ttactcttcc gtagagcaaa tggcgtatgt tgccaagaca
     4441 tcctcgactg gaacttggca gaaactgtac tacacaggtt tctttgatgg aggaggaagc
     4501 gcaactgtaa cggcgattac tacatcaggc accgatgtat atgcctgtgg ttggttcgta
     4561 ggaaatgtaa cgattggacc tcagagtttc caatcgtata caccttcagg tagtgtcgaa
     4621 agttcacaag acatatgggt cgcgaagttc gatcagaatc tgaatccatt gtgggcaaaa
     4681 caagcgggaa ccgtggagaa tgacgacgct tgcgaggata tcttggtatc tccaactaat
     4741 ccagatggta gcaaagatgt gtacatcatt ggagaaacta atgcaaccgc ccaggcatat
     4801 tttggtacga gtattacacg
//
LOCUS       DUKB01000133            3136 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_243293, whole genome shotgun sequence.
ACCESSION   DUKB01000133 DUKB01000000
VERSION     DUKB01000133.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_243293"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            202..>3136
                     /locus_tag="HA345_04445"
     CDS             202..>3136
                     /locus_tag="HA345_04445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84640.1"
                     /translation="MLYRKVTSTALTFLMVTMAMALLVSPLEMQESPTPLVEEPAVLN
                     APSDPGHTVFAQYLTSDNCPYCYNYGSPALKQAKNSLPDKFVYISYHSASYGNTADAE
                     SGNIAPIYGVNHLQESSGAPKVVFGDKQKQSGCGSNTCYDSYISSGGQMHSSAADYGM
                     TISQIDNGDGTADISIAATYVGSGTPASNLLLYAAVTEEVCNSHGYNDGSKGGNCWEA
                     WLLNNNGYASNSGTVNGGTGFNTISITANQWTTTTWTNVPINLVNGGMSNFNTVAALY
                     STWSTNSFNANVYAATDSTMQPAIDVKIDTMTVENDAGFDGIIAGDMVDIDVSIKNIG
                     VDIYSANNGESISIYKVDGVQESLIGTMSIQSLGVGASQSFSTTWDSSSETIENNGLT
                     RFRARITVQDGNGANNVMGGTIAHDAAPTAVMPVANGVSTTISRGGSLDFDLTAIPND
                     AVDDLDSMTPIMEVKHSTSQEWESSWVSVSSGPVGEGSNARFIASVTPPVVAGSGDYD
                     IRTSWTDSRNQVSNWLLTEDAFSLLNGLPTVLTSSSSQFSGVPIVKVGVQGSISMSGI
                     ISDAETPLSQLTVTSNSPNFVAWDASAMEMDVLFDSVDRDAQGNIRDQGVQVTIGDGE
                     DTNTGTVFFTVIPNGAPTWSSIPAQTIDEGGSVAVSLTQYLSDTDDSGVTVSNTEIRA
                     LGVHVVSIDPADRISAEIVDQTINIETVDSDVTGTVLITLRASDATQSTDTTLAVIIR
                     ELNDAPVFDVSSLDGLRIKVGETHSLNVADYVSDVDDDQEDIFTTVTGAQPGSVVPVA
                     IGVYEMQWSESGMQVVQVRVSDPSGAVNQYQFTVEVIGDLPMIWDEGQGGDLQAGYDN
                     MEYGTHPTYIVSYTGSVNFEEVALTWQICNSIVGTCHSQGQAPGFDQSFLLQSVYTEG
                     LRTGDEVKLDVIASDVDGFEHKTTKSYSVFAVEKIVIDSDGDGVSDSEDAFPNDFAES
                     IDTDGD"
BASE COUNT          768 a          769 c          778 g          821 t
ORIGIN      
        1 tgcctcgtat ccgtcgttcc tcgtcaacca tctcgacggc aaacaccttc ccatttgcct
       61 cgcggagaag gaccagttta gggggctcca tcaatgggtg tccgatgtct tgaggacttc
      121 aaaccgcgta ttctcagaca gaggcggtca caatggacgc gagtcacgaa attttataca
      181 cagaattaac atgaatctaa catgctctac cgaaaggtaa cctcgactgc ccttacattc
      241 ctcatggtta cgatggccat ggcgctcctc gtctcacctc ttgagatgca ggaatctcct
      301 actcctcttg ttgaggagcc tgctgttttg aatgctccaa gcgatcctgg acacacagtg
      361 ttcgcgcagt atctgacatc agacaactgc ccctattgct acaattacgg gagccccgcc
      421 ctcaagcagg caaagaattc ccttcccgac aagttcgttt acatctcata ccattccgct
      481 tcctatggga acacagcaga tgctgagtcc ggaaatattg ctccgattta tggtgtaaac
      541 caccttcaag aatcgagtgg cgctccaaag gttgtattcg gcgacaagca gaaacaatct
      601 ggttgtggtt ccaatacctg ctacgacagt tacatctcaa gcggtggcca gatgcattct
      661 tcagctgcag attacggtat gaccatcagc cagatcgata atggcgatgg cactgcagat
      721 atctcaatcg ctgccaccta tgtcgggtct gggactcctg cctcgaacct gctgttgtat
      781 gcagctgtga ctgaagaggt ttgcaattct cacggttaca atgatggaag caagggaggc
      841 aattgttggg aagcatggct cctcaacaac aatggttacg ctagcaatag tggcaccgtt
      901 aacggcggta ccggattcaa tacgatttca attactgcta accaatggac tacgacaaca
      961 tggactaatg ttccaatcaa tctagtcaat ggcggtatgt cgaacttcaa tacagttgca
     1021 gcgctctact ctacctggag taccaactcc ttcaatgcca atgtctacgc agctactgac
     1081 agcacaatgc aacctgcaat tgatgtgaag attgacacta tgactgtcga gaatgacgct
     1141 ggtttcgacg gaattatcgc aggtgacatg gttgatatcg atgtcagtat caagaatatc
     1201 ggtgttgaca tttattctgc gaataatgga gaatcgattt caatctacaa ggtagacggc
     1261 gtccaggaat ctctcattgg cacgatgagc atccagtcgc ttggagtcgg tgcttcacag
     1321 tcattctcaa cgacttggga ttcatcttcg gagaccattg agaataatgg tttgactcgt
     1381 ttccgtgccc gtattaccgt ccaagatggt aatggtgcga acaatgtgat gggtggcacg
     1441 attgcccatg acgccgcacc aactgcggtt atgccggtcg ctaatggggt tagcaccact
     1501 atctctcgcg gcggaagtct cgacttcgat ttgacggcga tcccgaacga tgctgtcgat
     1561 gacttggatt cgatgacacc catcatggaa gtcaagcact cgacctccca ggagtgggaa
     1621 tcttcgtggg tatcggtcag ttctgggcca gtaggcgaag gtagtaacgc tcgcttcatc
     1681 gcttcagtca cacctcctgt agttgctgga agcggtgatt acgacatccg tactagttgg
     1741 actgattctc gcaatcaggt ctcaaattgg ctcctcactg aggatgcgtt ctctcttcta
     1801 aacggacttc caactgtcct cacatcgagc agttcacagt tctctggcgt accaatcgtg
     1861 aaggtaggtg tgcagggatc catctcgatg tctgggatta tcagtgacgc tgagaccccc
     1921 ttgagtcagt taactgtcac gagtaattct ccgaacttcg tcgcatggga tgcatctgcg
     1981 atggagatgg atgtgttgtt tgattcagta gatcgtgacg ctcagggtaa tattcgtgac
     2041 cagggcgtac aagtgactat cggtgatggt gaagacacca atactggtac tgtcttcttc
     2101 acagtcatcc cgaatggggc tccaacatgg tcttctattc ctgcccagac tatcgatgaa
     2161 ggcggttcag tcgcagtttc gcttacacag tatctctctg atactgatga ctccggagta
     2221 acggtatcca atactgagat tcgggctctc ggcgttcatg tggtaagtat tgatccagcg
     2281 gatcgcatct ctgctgagat cgttgaccag acaattaaca tcgaaactgt ggatagtgat
     2341 gtcactggta ctgtccttat cactctccgt gctagtgatg caacacagag cacagatacg
     2401 accctagcag tcattattcg tgagcttaac gatgcccctg tattcgatgt ttccagtctt
     2461 gatggcctcc gtatcaaggt cggtgaaacc cactcgctca atgtcgctga ctacgtctca
     2521 gatgttgatg acgatcaaga agacatattc actacagtaa ctggagcgca gcccggttcc
     2581 gtggtcccag tagccattgg ggtgtatgag atgcaatggt cagaatctgg tatgcaggta
     2641 gtccaagtac gtgtttctga cccctcaggt gcagtcaatc aataccaatt cacagtggag
     2701 gtcattggtg accttccaat gatttgggat gaaggtcagg gcggcgacct tcaggccggc
     2761 tacgataaca tggagtatgg tacccatccg acctacatag tgtcctacac gggctcggtg
     2821 aattttgagg aagtagcact tacttggcag atttgcaaca gtattgttgg gacttgtcac
     2881 agtcagggtc aagcgcctgg attcgaccag tccttccttc tacagtccgt ctacactgaa
     2941 ggcctgcgga caggtgatga ggtcaaactc gatgtgattg caagcgacgt tgatggattc
     3001 gagcataaga ccacgaagtc ctacagtgtc ttcgcagttg agaagattgt aatcgattcc
     3061 gatggtgatg gagtcagtga ttcagaagat gccttcccta acgattttgc agaatcaatt
     3121 gacactgatg gtgatg
//
LOCUS       DUKB01000134           12041 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_60186, whole genome shotgun sequence.
ACCESSION   DUKB01000134 DUKB01000000
VERSION     DUKB01000134.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12041)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12041)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12041
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_60186"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>138)
                     /locus_tag="HA345_04450"
     CDS             complement(<1..>138)
                     /locus_tag="HA345_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84641.1"
                     /translation="PDSDGDGTSDLNDGWVMVNGGYLEDARITASDNLAAVLFMPGNG
                     T"
     assembly_gap    139..444
                     /estimated_length=306
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<445..646)
                     /locus_tag="HA345_04455"
     CDS             complement(<445..646)
                     /locus_tag="HA345_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84642.1"
                     /translation="MEPSRNQGLVLFILFILLSSVSIPSVSANGSADADGDGTTDSLD
                     DCPNAWGNSTTDRQACPDSDGDG"
     gene            766..2316
                     /locus_tag="HA345_04460"
     CDS             766..2316
                     /locus_tag="HA345_04460"
                     /inference="COORDINATES: protein motif:HMM:NF024589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84643.1"
                     /translation="MEVEPDRVNVPVEDRVLLHLLEHLSERDRHTVESEVTRSGISQA
                     CALHPPNVSRAMKNLARRELVTSLTRSIKGENRRQRTWQLTSDGESLAKERESRLASS
                     RVSIRDQEGTMLTVRADQAASRIEAHMSLLQVLMHAQHEGVLNYGDIRFGSIRTDSST
                     LGSLTLLKGAHSTYHVRPPPIRRIRGREAELESLDDWFESRVSGMLVHGIAGAGKTTL
                     ISHWLSGLLDRMQSLRLMFYPCHPWDTPLGLAISLLHRLGIESRSNDSWDPHDLLDTL
                     PRTAGAHFDIDLFRRRLTEYLTDPLALRERVFPDHEMESDMPPYILLVIDDAHHLAES
                     GRDLFGALLQVAEITPLRLLFISRTTMTFYDRRDVLTRNRMAELAIPGLSKDVVKTWL
                     EDIDVSEQADASEVHRLTGGHPLALELLEMYGDVIHGDWLSFLDQEILNVLPSSDRAV
                     LDVLAGRDRPIPWSELGGEINADGPPPASLIESGLIFEVEGGFWIHDAIRERLQRDLG
                     AMKRVRGD"
     gene            complement(2317..2634)
                     /gene="trxA"
                     /locus_tag="HA345_04465"
     CDS             complement(2317..2634)
                     /gene="trxA"
                     /locus_tag="HA345_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014065005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HIH84644.1"
                     /translation="MGKIVDAGDSDFDVVTKSDEWVLVDFWAPWCGPCKMIAPVLQQL
                     SGEREMTIAKVNTDSNPLSAGKFGIRGIPALLLFHNGQLVDQQSGAMPKAQFDQWLDR
                     HMA"
     gene            2729..3412
                     /locus_tag="HA345_04470"
     CDS             2729..3412
                     /locus_tag="HA345_04470"
                     /inference="COORDINATES: protein motif:HMM:NF004076.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HIH84645.1"
                     /translation="MEITPSILTADFTRLGEVLDDALEADIRWIHLDVMDGNWVVNRT
                     ITFGPALIRSIRNRLGDDVILDCHLMITNAEETWSQYVDAGVNLVIPHIEAIQDPAAL
                     IDSLHAAGVEAGLVLNPDTPVDMVLPHLPNLDLVLVMSVVPGKGGQSFMPEVEEKVRC
                     FRTAIDQQILDGGRHTRLMIDGGIKAHNAAQVADWGIDIAVVGSGLINDKGSIAENLA
                     EINAELGQS"
     gene            complement(3415..4872)
                     /locus_tag="HA345_04475"
     CDS             complement(3415..4872)
                     /locus_tag="HA345_04475"
                     /inference="COORDINATES: protein motif:HMM:NF024832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HIH84646.1"
                     /translation="MLTIQRRPRTGRDAQALLGAEGVNIGLGVISQIILTRTLLDVEY
                     GWWVIVYDLFATLLLVLDFGIPTLVARDGPAKPTRIRAMVHYGLRIQCRIAAFTLPPI
                     LLIAWIGFDDMRTSVAILSLAIGAALMYLSGTHRVALRAIGEAREEAIARVIDKGLMV
                     GGYAVVWAIGRDGLMEFAMVYAGASMISTIYAIWRSERKLTASPQEDIQPEEDAKTLL
                     IRAAPFALTLVILPLMARMDKFLLAGFQGLELVAVYNIAWIVLMAGWAVPRSIQQAIL
                     PVFSNASADEGALRTEQVRAMHLVGLLTPFGIFVALPIATIGLPALFPHSLVEARPGE
                     GIDAVSLFVLMLPAWVWGLLSSPMLESTKLSNRTTTYARVILVGLAVNLTAGLLLVPI
                     FSLKGAAVSTTIGHLCIHLQTMRTSGMWDNLQCRSIMTMQLIAGILLHIAATTLALAE
                     SFESTWIKWGIPLCCFVLATLLILKPTREDWPKVR"
     gene            4949..5272
                     /locus_tag="HA345_04480"
     CDS             4949..5272
                     /locus_tag="HA345_04480"
                     /inference="COORDINATES: protein motif:HMM:NF013851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HIH84647.1"
                     /translation="MVTAEWVEAEVAAVVSDALVEAIDLNGTGDHFHVRVIAASFDGV
                     RPLQRQKPILDHFKPHIASGAVHALDLKCMTPQQADNAGDTTFHPHGDGSGFFGIHIR
                     RKDKE"
     gene            5278..5640
                     /locus_tag="HA345_04485"
     CDS             5278..5640
                     /locus_tag="HA345_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin, Grx4 family"
                     /protein_id="HIH84648.1"
                     /translation="MTGFEWTADELQGIVDEHLVVLFMKGTPEAPQCGFSNRAAQVLN
                     QLGHPYASVDVLSDRRAIPSICQWSDFPTMPQVFIGSELIGGSDIALELFQSGDLKTI
                     IEEARTVRGMDADWSNDS"
     gene            5765..6673
                     /locus_tag="HA345_04490"
     CDS             5765..6673
                     /locus_tag="HA345_04490"
                     /inference="COORDINATES: protein motif:HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH84649.1"
                     /translation="MSPTPGLDYAVNRSKQIGFGHRSFTRSVRLACSSSINVDAVLVE
                     WTAVEGSYKGLILQDIPWFILDRSPPVSRGIVGLIQRRQHTRAWKIAREYARGAIVKS
                     SHHRHLAEHLPVAVVPAGVDVERFEVDRDDRDIPRCIYIGSLAKERELIRVHAMDIDV
                     IFMGSGSDAERLLRAGADVRPASEMKRIPEVLAAADIGIMHLPNRMEWKGASPLKVAE
                     YAAAGLCVVTSDVGDMPDPDSNPWLRLVPLGDDTAFIEAVNYFRSQSSEMRRHLGKSA
                     KKWARSERDWSIVSAPLNSLIENQIA"
     gene            complement(6642..7613)
                     /locus_tag="HA345_04495"
     CDS             complement(6642..7613)
                     /locus_tag="HA345_04495"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012744.1,HMM:NF024968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH84650.1"
                     /translation="MCRNPPDGWNANAIPTHADGGIWTILNAWKIGRRRLTRLIQNDT
                     PDLIHIHAATRFSWVRKQACIHITQNMGIPTIVHLHSGDFDRFTKSWLGWPRRSLLKE
                     LQRPSVYPVVLTQQWKEWIENLGIDGAYVMPNPYQNGILHTSSEKRDRFQLLMIGRGN
                     RSKGHRIAIDAVNRLNKIGIKVKLDILGPSNEELPTTGRNISVHGWVERKQLEAISSK
                     SGLLLVPSTHEGMPLVVLDALASSLPCLVSKTSAEFIGRGGKVVDSLEPSAWADAIQS
                     IIEDNDEWRRMCQEAPLAVQGLDSESNRIQWGELYDSIMQSDSRLGN"
     gene            7783..9024
                     /locus_tag="HA345_04500"
     CDS             7783..9024
                     /locus_tag="HA345_04500"
                     /inference="COORDINATES: protein motif:HMM:NF025025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HIH84651.1"
                     /translation="MIDPLGVIQIGTGLLAIVPLIDHWLRMRRISTRQKMEPKEKTTD
                     LPLIVVLPIWNEAKLIRIRLENLAQQQYTGDWSLMIVDSASTDESLKIIDTWLSENSE
                     DFPNIPSIIRMPQRLGKTAAVNTALDNIEQESIVVLTDADVLFPPDTLNRISCWFGSD
                     SDIGAVSGAPNYLSNRLTSAGRNEETYRRFYIDQRIGESILDSTPIFEGSLLAFRRNT
                     IGATRLDMSKNADDSQLAVMIRRTGLRSIFDPKLVFQEHIPTDSVENDQRSIRRARGL
                     QNLFLMNRDLWLSRKEGRFNRIFRRQAWIHLIAPVLVTISLMAMFTHIALTMVRIQNG
                     VSMPIGDIALAFTSSLGIIVYLLGDWIPLGRTLKSYLRGQSILMRVHLDRIIRRNAAI
                     WEPTQTNRDALLKWSQRKKEF"
     gene            complement(9119..9667)
                     /locus_tag="HA345_04505"
     CDS             complement(9119..9667)
                     /locus_tag="HA345_04505"
                     /inference="COORDINATES: protein motif:HMM:NF019407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilin"
                     /protein_id="HIH84652.1"
                     /translation="MGKMPPPSVGAEDKKMNMNKNNKNDEAVSPVIATILMVAITVVL
                     AGVLYVWANSLASDQPDAASLNNFDASDATAAMTAGDDDTMLRMSWTYADEDLNWAFV
                     SFKLEIGDNVYDCEVEANAADGDECMIKQNGGDSDTQWESDEIVFIHEYNTDICSAQC
                     TVEITIQYNGQVLSGTPSVPVA"
     gene            complement(9984..10991)
                     /locus_tag="HA345_04510"
     CDS             complement(9984..10991)
                     /locus_tag="HA345_04510"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:NF006420.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II methionyl aminopeptidase"
                     /protein_id="HIH84653.1"
                     /translation="MEGPELKRWRNAGAVARRTLNHISESMEAGMTWHSVIENSERYI
                     RRHGGNPAFPCTLSVNNIAAHFTTDHTLTPPEGVEEMILHKGDLVKLDIGVHVKGAIA
                     DNAITIEIGNGGNHTDQIRAAKEARDASIEKMHPGTPWHEVGAAAEQVAIDAGFQPIR
                     NLSGHQLEKFNLHAGVSVPSHACGPNHQGYRGVVPSGGIFAVEPFNTTGSSGMVENMS
                     PRNSSNIYRVTGNVEIRRAVAKKKLRPLGATMARYIEERYNTLPFAERWAYPLLKKPF
                     PNEDEESHQRKWNNLVKKLQEIRFLETYAALRCADGGTVGQYEHTVHITDGGPEIMTL
                     P"
     gene            complement(10973..11575)
                     /locus_tag="HA345_04515"
     CDS             complement(10973..11575)
                     /locus_tag="HA345_04515"
                     /inference="COORDINATES: protein motif:HMM:NF013468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84654.1"
                     /translation="MFHPDLLNRIKNALPIVYPTSTLPALGVIPTKDGLNNIFELKKR
                     DNLKIVSIAVAEFNQVANLVQIPSYLEDFLNGFSPGSITTILEANETLDSRLGGNWIA
                     IRKVAHPTARNLLEAVGPLTATSANLSGMRVENHCNEAAAALGLPSQAAISELCSGGE
                     PSTLIRCPVFLSLTDGQSPEIVREGVVRSEEVVDKWKALN"
     gene            complement(11585..11854)
                     /locus_tag="HA345_04520"
     CDS             complement(11585..11854)
                     /locus_tag="HA345_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84655.1"
                     /translation="MREAVIEVCSGDTAFTIVPPETISCNMDVVTERIENAGFICKLK
                     SRFCHVFEGDYELTLYPSGKLLLRAEDIEEARRIASLHLDVWLAD"
BASE COUNT         2929 a         2769 c         2877 g         3160 t
ORIGIN      
        1 aagttccgtt ccccggcatg aagagtacag ccgctagatt gtcactagct gtaattcgtg
       61 catcttcgag gtaccctcca tttaccatta cccaaccgtc gttcaaatca ctagtaccat
      121 caccatctga atcagggcnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnntaccat caccatctga atcagggcat gcttgccgat
      481 cagttgtgct gtttccccac gcattggggc agtcatctaa actatctgta gtgccatctc
      541 catccgcatc cgctgagcca ttcgcagata cagagggtat agacacagat gacaagagaa
      601 taaacagaat gaacagaacc aacccttgat tacgggacgg ctccatagtt tcgggtggct
      661 ctatggcaaa taaaccgttt tcagtacctg catcgtaatc tttttttgaa aatctaacac
      721 gtctgtccga attcttcaat tcggatgcgg agacatcacc tgttcatgga ggtcgaacct
      781 gacagggtta atgtccctgt tgaagatcgt gttcttctcc atctcctaga gcacctttca
      841 gagcgagacc gtcatactgt tgaatctgaa gttacaagga gcggaatttc tcaggcgtgt
      901 gcccttcatc ctcctaatgt gagtcgtgca atgaagaacc ttgctcggcg agaacttgtt
      961 acatcactca ctaggagcat caagggtgag aatcgtagac agaggacttg gcagttgaca
     1021 tcggatggag aatctcttgc gaaggagcga gagtctcgcc ttgcctcttc tcgcgtttcg
     1081 attcgagatc aggaagggac gatgctaacc gtacgagccg atcaagccgc ttccagaata
     1141 gaggcacaca tgagcctgct tcaggttctg atgcacgcac agcatgaagg cgtcctcaac
     1201 tacggcgaca tccgattcgg atcaattcga acagattctt ccactctggg atccttgact
     1261 ttactcaaag gcgcccattc aacataccat gtccgacctc cgcccattcg tcgtattcgt
     1321 ggaagggaag ccgaactaga atcattagat gattggtttg agagtcgagt atcaggcatg
     1381 ctcgttcatg gtatcgcagg agcagggaag actacactaa tctcccattg gttatcgggg
     1441 cttcttgacc gcatgcagag tctccggctc atgttctatc cctgccaccc atgggacacg
     1501 ccccttggtc ttgcaatcag ccttcttcat cgccttggga ttgaatcccg gtctaacgat
     1561 tcttgggatc ctcatgattt gttggatacc ttgccccgca ctgctggtgc gcacttcgat
     1621 atcgatctct tcaggaggcg cttaacagag tacctgactg accctctcgc tttgcgagag
     1681 agagtattcc ctgaccatga gatggagtca gatatgcctc cttacatcct ccttgtaatc
     1741 gacgatgcac accatctcgc tgaatccgga cgcgatcttt ttggagcact attgcaggta
     1801 gctgagatta caccacttcg ccttctgttt atctcaagga cgacgatgac attctacgat
     1861 cgtcgggacg ttcttactcg taataggatg gcagaactgg ccattccagg tctgagtaaa
     1921 gatgtagtga agacatggtt ggaggatatt gatgtatccg aacaagcaga cgcatcagag
     1981 gttcatcggc tgactggcgg ccatccgtta gcattggaac tgcttgagat gtatggggat
     2041 gttatccatg gtgattggtt gagtttcctt gatcaggaaa tcctgaatgt attgccctca
     2101 tcggatcgtg ctgtgctaga tgtccttgct ggccgtgata gaccaatacc ttggagcgaa
     2161 cttggtgggg aaattaatgc tgatggcccc cctccggcga gcctcattga atcaggcctt
     2221 attttcgagg ttgaaggggg attttggatt cacgatgcaa ttagagagag gttgcaaaga
     2281 gaccttggcg ctatgaaacg cgtacgcggt gattgattat gccatgtggc ggtctagcca
     2341 ttggtcaaac tgagccttag gcatcgctcc tgattgctga tcaactagtt gtccgttatg
     2401 gaatagcaaa agtgccggga ttccacgaat gccgaacttt cctgctgaga gcgggttact
     2461 gtcggtgttg acctttgcaa ttgtcatttc tcgctcacca gagagttgtt gaagaacagg
     2521 tgcgatcatt ttgcaaggcc cacaccaagg tgcccagaag tcaacaagga cccactcatc
     2581 gctcttagtt acgacatcaa aatcagaatc tccagcgtct acaatcttgc ccattgtcct
     2641 tcctcaccaa atcgatcact gatgaacacc tatcaacata tggaccatcg cgtaactgcg
     2701 aagaaccccc gccgggtcag gagtaacaat ggagatcact ccgagtatcc tgactgctga
     2761 tttcacccga ttaggcgaag tcttagatga tgccttagaa gctgatatta gatggattca
     2821 tctcgatgtc atggatggga attgggtagt aaatcgaacc ataactttcg gtcctgcact
     2881 aattcggagc atccgaaata gattgggaga tgatgtaatt ctagactgtc atctgatgat
     2941 tacaaatgcg gaagagacct ggtctcagta tgttgatgca ggggtcaatc tagtgattcc
     3001 tcatatcgaa gcaatccaag accccgctgc tctgattgat tccctccatg ctgccggtgt
     3061 ggaggctgga ttagttctca atccagacac tccagtagac atggttctcc cccatcttcc
     3121 aaatctcgat ttagtgttgg ttatgtctgt agtacctggt aagggcggtc aatcattcat
     3181 gccggaagtt gaggagaagg tccgttgctt ccgcactgca atcgatcagc agattttgga
     3241 tggcggccgt catacacgtt tgatgataga cggtggaatc aaggcgcata atgctgctca
     3301 agtagcggat tggggcatcg atattgctgt tgtcggaagt gggctgatta acgacaaggg
     3361 ctcaatcgca gagaatctcg ccgagataaa tgctgaacta ggtcaatctt gaacctaacg
     3421 aactttaggc caatcttctc ttgtaggttt caggattaac agagttgcta atacaaagca
     3481 acacagagga atcccccatt tgatccatgt actttcaaac gattcggcta gagctagtgt
     3541 ggttgcagca atatggagga ggattcctgc gattaattgc atcgtcatta tcgaacgaca
     3601 ttgtagatta tcccacattc cgctagtacg cattgtctgg agatggatac atagatggcc
     3661 aattgtggtg gaaaccgcag cgcctttgag cgagaaaatc ggcactagta gtagacctgc
     3721 agtgagatta acggcgagac caacaagaat gactcgtgcg taagtcgttg ttcgattaga
     3781 cagtttagta ctttccaaca tgggtgatga aagaagcccc catacccagg ccggtagcat
     3841 gagtacgaag agagagacag catcaattcc ttctcccggt ctcgcttcaa caagagagtg
     3901 cgggaagagg gcaggtagcc caattgttgc gataggaagt gcgacgaaga ttccgaaggg
     3961 agtgagtaat ccaaccagat gcattgctcg aacttgttcg gtgcgaagcg caccttcatc
     4021 cgcagacgca ttggagaata cgggaagtat agcctgttga atcgaacgtg gcaccgccca
     4081 tcctgccatt agaacaatcc aagcgatgtt gtatactgcc acgagttcca atccttggaa
     4141 acctgcaaga aggaatttgt ccattcttgc catcaagggg aggataacga gggtgagagc
     4201 gaatggtgca gcccggatta gcagtgtctt tgcatcttct tctggttgta tgtcctcttg
     4261 aggagatgct gtaagcttac gttctgatct ccatatggcg taaattgtgg aaatcatgga
     4321 agctccagca tacaccatcg cgaattccat tagtccatct cttccaattg cccatacaac
     4381 tgcatatcct ccgaccatta gccccttgtc gatcacacgt gcaatggctt cctctcttgc
     4441 ttcacctatt gcacggagtg cgacgcgatg tgttccgctc agatacatca gtgcagcgcc
     4501 aatcgccagt gatagtatgg cgacacttgt cctcatatcg tcaaaaccaa tccaagcgat
     4561 gagcaaaatt ggtggtaagg tgaaagcagc aattcgacat tgaatcctaa gtccgtaatg
     4621 caccatggct cgaattcgag tcggttttgc cggtccatct cgagcgacta gagtcgggat
     4681 tccaaaatcc agcacaagga gtaaagttgc aaacaaatcg tagacaatta cccaccaacc
     4741 atactcaaca tcaagcagtg tgcgggtgag aataatttgt gagattactc caaggccaat
     4801 gttgacacct tcagctccaa ggagagcctg ggcatcgcgc ccggtccgag gtcgtcgttg
     4861 gatggtcaac atttggatgg tacatgtgga atgaaatgac cattctctct ttgggagggt
     4921 tcaaatccgt cattgagaag tgtgcatcat ggttacggca gagtgggtag aggccgaggt
     4981 tgccgccgtc gtctcagatg ccttggttga agccattgat ctcaacggga ctggggatca
     5041 cttccatgtt cgagtgattg cagcatcttt cgatggagta cggccgttac aacggcagaa
     5101 accaatcctt gaccatttca aaccacacat cgcctcagga gcagtacatg ccttggatct
     5161 aaagtgcatg actcctcaac aagccgataa tgctggagat actacttttc atcctcatgg
     5221 ggatggaagc ggattcttcg gaatccatat ccgtagaaaa gacaaggagt gaacaaaatg
     5281 acaggattcg aatggacagc tgatgaatta caaggaattg tggacgaaca cctcgtcgta
     5341 cttttcatga aaggaacgcc ggaagcgccg cagtgtggat tttccaaccg tgcagcacag
     5401 gttttgaacc agttgggaca tccttacgca tccgtcgacg tattgagcga tcggagggct
     5461 ataccttcca tctgtcagtg gtcggacttc cctactatgc cccaggtttt catcggaagt
     5521 gaattgattg gcgggtctga tatcgctctg gagttattcc agagtggaga tctgaaaact
     5581 attatcgaag aggctcgtac cgttcgtggt atggacgctg attggtcgaa cgattcctga
     5641 gacggaattg accatcatgc gccttctttg gataactcat cgtgatctta atcgagatct
     5701 taccagaact tcacggcttg gcctcgcgaa tgcacttgaa aatcagggtc atgagattca
     5761 ttggatgtca cctacaccag ggcttgatta tgccgtaaat cgttcgaagc agataggatt
     5821 cgggcaccgt agtttcacac gttctgttag attggcttgt tcttcctcaa tcaatgtaga
     5881 tgcagttctt gtggaatgga ctgcagtcga aggttcatac aaaggcctca ttctccaaga
     5941 catcccttgg ttcatccttg atcgtagtcc tccagtaagt cgtggtattg taggtttgat
     6001 tcagcgaaga cagcatactc gtgcgtggaa gattgcacgt gagtatgccc gtggtgctat
     6061 cgtgaaatca tcacatcatc gacatcttgc tgaacatctc ccagttgcag tggttcctgc
     6121 tggtgtggat gtggaacgtt tcgaagtaga tcgcgatgat agagacatac ctcgctgtat
     6181 ctatattggt tcgcttgcga aggaaagaga attaattcgc gtgcacgcaa tggatatcga
     6241 tgtgattttc atgggttctg gcagcgatgc agaacgatta cttcgtgcag gagcggacgt
     6301 acgtccagca tctgagatga aaagaattcc agaggttcta gccgccgctg atattgggat
     6361 tatgcatcta cccaatcgca tggaatggaa gggggcatca ccactgaagg ttgctgaata
     6421 tgcagcagcc ggactatgtg tcgtcacatc tgatgtagga gacatgccag atcctgatag
     6481 caatccttgg ttgagacttg ttccattagg ggatgatact gcattcattg aagcagtcaa
     6541 ttatttccga tctcaatcta gcgaaatgag gcgacatctt ggaaagagtg caaagaaatg
     6601 ggctagaagt gaacgagatt ggagtattgt gagcgcacct ctcaattccc taatcgagaa
     6661 tcagattgca taattgaatc gtaaagttct ccccattgaa ttcgattgga ttctgagtcg
     6721 agtccttgga ctgctaacgg agcctcttga cacatccttc tccattcatc attgtcttca
     6781 ataatcgatt ggatggcatc agcccatgca gagggttcca atgaatcgac aaccttcccc
     6841 cctctgccaa tgaattccgc tgaggttttt gatacaaggc aggggaggct gctggctaaa
     6901 gcgtcgagta caactagtgg cataccttcg tgggtagagg gtaccagtag gaggcctgat
     6961 ttcgatgaga ttgcctcaag ctgctttcgt tctacccaac cgtgcactga aatattccgt
     7021 ccagttgtag gaagttcctc atttgagggc cctaagatgt cgagcttgac tttgattcca
     7081 atcttattca ggcgattcac agcatctatt gcaatgcggt gacccttgct acgatttcct
     7141 ctgccgatca taagcaattg aaaacgatcc cttttctccg atgatgtgtg gagaatacca
     7201 ttttgatatg gattcggcat gacatatgcg ccatcaattc ccaagttctc aatccactct
     7261 ttccattgtt gagttaatac aactggatag acagatggcc gctgtagttc tttgaggagg
     7321 cttcgtcgtg gccaacctag ccaggattta gtaaatcgat caaaatctcc agagtgtaaa
     7381 tgaacaattg ttggaatacc catgttttga gttatgtgaa tacaagcttg cttgcgcacc
     7441 caggagaacc gagttgcggc atgtatgtga atgaggtcag gggtgtcatt ttggattaaa
     7501 cgagttaatc ttcgccgccc aatcttccat gcgttcaaga tagtccaaat tcctccatca
     7561 gcatgtgttg ggattgcatt agcattccat ccgtcggggg gatttctaca cattcttctg
     7621 attgaggacc ccattccacc tcgggtttcc gagggaccga tatgcaagac cctccgtacc
     7681 atgacttccg gattccggat gtggtgaaag gtattcggga atagggcgta aagattccat
     7741 accgacctgt ggaatcatat ctagtccgat ttagtttgta ccatgatcga tcctctaggg
     7801 gtcatccaga ttggtaccgg cctccttgct atcgtacctc tcattgatca ttggttgagg
     7861 atgcgacgta tctcaacgcg ccaaaagatg gaaccgaaag agaaaaccac ggatttaccg
     7921 ctgattgtcg tgctcccaat ttggaatgaa gcgaagttaa tccgaatccg tttagagaat
     7981 ctcgctcagc agcagtatac aggcgattgg tccttgatga tcgttgactc tgcgtcaaca
     8041 gatgaaagct tgaaaatcat tgatacgtgg ttgagtgaga attcagaaga tttcccgaat
     8101 atcccatcca tcattcgaat gcctcaacgt ctgggtaaga ctgctgctgt gaatacagca
     8161 ctggataaca tagagcaaga atccatcgta gtccttaccg atgcggatgt attgtttcct
     8221 cccgacacct tgaatcgaat ttcttgctgg tttggttcag attcagatat cggtgcggta
     8281 agtggtgccc ccaattatct ttcaaatcgg ttgacatctg cagggaggaa tgaagagaca
     8341 tatcgccgat tctacatcga tcaaaggatt ggtgaaagca tacttgattc aacaccgatt
     8401 ttcgaaggtt ccttgcttgc attccgaagg aatacgattg gcgccacccg tcttgacatg
     8461 tccaaaaacg ctgatgattc acaactcgcc gtgatgatac gaagaactgg tttgaggagt
     8521 attttcgatc caaaattggt attccaagaa catattccaa cagattcagt ggagaatgat
     8581 caacgttcca tccgtcgtgc acgtgggctt caaaatctat tcttgatgaa tcgcgatcta
     8641 tggttaagcc ggaaggaagg acgttttaat cgaattttta gacgtcaagc atggattcat
     8701 ctcattgctc cagttctagt tacaatttca ctcatggcga tgtttacaca tattgcacta
     8761 accatggtcc gtattcagaa tggggtaagc atgccgatag gagatatcgc gctcgctttt
     8821 acatcatcat tgggcataat cgtatacttg cttggcgatt ggattccatt gggtcgaacg
     8881 ctcaaatcat accttcgcgg ccaatctatc ttgatgcgag ttcatcttga tcgcatcatt
     8941 cggcgtaatg ctgctatctg ggagccaact cagacaaaca gagatgccct gctcaaatgg
     9001 agtcagagaa aaaaagagtt ctgacccctg agaaaggcgc gaagccaatc tcagaggcca
     9061 agggatgtat ctgtgccgtc aattcggcag tattgtcatc agaacgattc tatcgcgatt
     9121 aagcgacagg aacggatgga gtcccggata ggacctggcc gttgtactgg atggtgattt
     9181 ctacagtgca ctgagcgctg cagatgtccg tgttgtactc gtggatgaag acgatctcgt
     9241 cggattccca ctgggtgtcc gaatcgccgc cgttctgctt aatcatgcac tcgtcgccat
     9301 cagctgcgtt agcctcgact tcacagtcgt agacattgtc gccaatctcg agcttgaagc
     9361 tcacgaaagc ccagttaagg tcctcgtcgg cgtaggtcca tgacatgcgt agcattgtgt
     9421 catcgtcccc ggcagtcata gcggcggttg catccgatgc atcgaagttg ttcaggcttg
     9481 ctgcatctgg ttggtcactc gctaggctgt tggcccagac gtatagtacg cctgctagca
     9541 cgaccgtgat cgcgaccatt agaatggttg cgatgacggg gctcacagcc tcatcgttct
     9601 tgttgttctt gttcatattc atttttttgt cctctgcccc aacgcttgga gggggcatct
     9661 tgcccataac gctcattgat attaatctgt ctgccgtcgt gaatcgtctt tgactaggtt
     9721 tggaaatgaa agacgtctct ctatattgca cccatattcc actctttatc aacagttttg
     9781 aatcaaaaat tatctattat cggacacgaa ttttggagcg ttctatttgt agagtcgacg
     9841 gatcatgtct gccgacccgt catttttggt gtacagggca gaaggacaac gcgaggggat
     9901 gggatgcact ctacgaaact tcaggtccct gtacggtatt gtatgagggc aggggaggta
     9961 taatggttcg gatagaattt gaatcagggt aatgtcatga tttcaggtcc accatctgtg
    10021 atgtgaacag tatgttcgta ctgtcccaca gtgcccccat ctgcgcagcg tagagcagcg
    10081 taagtctcaa ggaatcgtat ctcttgcaat tttttcacta gattattcca cttcctctga
    10141 tgactttcct catcttcatt cgggaagggt ttcttcaaca atgggtaagc ccaacgttcg
    10201 gcaaagggca aggtgttgta tctttcttcg atataacgtg ccatagttgc acccaacgga
    10261 cgaagtttct ttttcgcaac cgcacgacga atttcgacat ttccagtaac gcggtagatg
    10321 tttgaagagt tccttggaga catattctcg accataccac ttgatccagt agtattgaaa
    10381 ggttcaactg cgaagatacc gccggaaggt acaacgcctc gatatccttg atgatttggt
    10441 ccacaagcat ggcttgggac acttacaccc gcgtgtaagt tgaatttctc taattggtgt
    10501 ccagagagat ttcgaattgg ttggaaaccg gcatcaatgg ctacctgttc agccgcggct
    10561 cctacttcat gccaaggtgt cccagggtgc atcttctcga tggatgcatc ccgtgcttct
    10621 tttgcggcac gtatctgatc agtgtggttt ccgccgtttc caatctcgat tgtgatagca
    10681 ttgtcggcga tcgccccctt gacatggact ccaatatcta acttaacgag gtctcccttg
    10741 tggagaatca tctcttcaac accttcgggt ggagtaagtg tatggtctgt agtgaaatga
    10801 gcagcgatat tgttgacaga tagggtacag gggaacgctg gattccctcc atgtcgacgt
    10861 atgtagcgtt cagagttttc gatgacgctg tgccatgtca tgccagcctc catactttct
    10921 gagatgtgat tgagagtgcg gcgtgcaaca gctccggcgt ttctccaacg ctttagttca
    10981 gggccttcca tttgtctacc acctcttccg aacgaacgac tccttctctc acaatctctg
    11041 ggctctgccc gtcagtcaaa gaaaggaata cggggcaacg tatcaatgtg ctgggttcac
    11101 ctccagagca tagttcagag atagcagctt gcgaggggag gcccaatgct gctgctgctt
    11161 cattgcagtg gttctcgaca cgcattcctg aaagattcgc cgacgtcgct gtgagcggac
    11221 ccacggcctc caacaaattc ctagccgttg gatgagccac ctttcgtatg gcgatccaat
    11281 ttccccctag acgagaatct agtgtttcat ttgcttcaag gatcgttgta atcgatcctg
    11341 gtgaaaaacc gtttaggaaa tcttcgagat aagacggaat ttgtacgaga ttagccactt
    11401 ggttgaattc tgcgactgca atgctcacaa tcttcagatt atctcttttc ttgagttcaa
    11461 agatattgtt caatccatcc ttagttggga ttacaccaag cgctgggaga gttgacgttg
    11521 gatagacaat cgggagcgca tttttgattc gattgaggag atctggatga aacatgcttg
    11581 aacctcaatc tgcgagccag acatctagat gaagagacgc aatacgtcgc gcttcctcga
    11641 tatcttcagc acgtaacagt aactttccag aagggtatag agtgagctcg taatcacctt
    11701 cgaatacatg gcagaatcga cttttcaact tacagatgaa acctgcattt tctatcctct
    11761 cagttactac atccatgttg caggagatgg tctcaggagg tacaattgtg aatgctgtat
    11821 ccccgctgca tacttcaatg acagcttctc tcatcgtcat cacttcacga atcagatttg
    11881 gaatcattat ccttcggtgg tccagcaggt ggcccctttg gtccaggtcc cattggaggt
    11941 ccagcaggtg gccctcttgg cccaggtccc atcggagatc cagcaggtgg ccccataggc
    12001 ccaggtccca ttggaggtcc agcaggtggc cccattggag a
//
LOCUS       DUKB01000135            6880 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_60187, whole genome shotgun sequence.
ACCESSION   DUKB01000135 DUKB01000000
VERSION     DUKB01000135.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6880)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6880)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6880
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_60187"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..732)
                     /locus_tag="HA345_04525"
     CDS             complement(<1..732)
                     /locus_tag="HA345_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84656.1"
                     /translation="MALPTTLRIGDIVVHITSIQNDIDEEDRDAILIGIVVQNSSSED
                     ASGISLSIETSGAITSVFKALPSNIPSGTANEAMFFLPIGCGAWMLSVTHAGLRGELG
                     PFPDGHRHVIEAPSLSESISSTSTSNSSTGGDAFADAFQSALSSFGSETTTDAAIQMN
                     GDDPLAAAFMNSGAAQIRTSTPDTVQQVPQSPPTPPVPSPPISPETSEIVTANTPTDS
                     PESTIEAGPQMGPGARGPPAGSPMGP"
     gene            complement(781..1350)
                     /locus_tag="HA345_04530"
     CDS             complement(781..1350)
                     /locus_tag="HA345_04530"
                     /inference="COORDINATES: protein motif:HMM:NF018028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HIH84657.1"
                     /translation="MALDPISTHGGITNLAKHIVSVEHGHWKIPDGTILAPIHKRAGA
                     FMLDVIFVNALLSILSGSRVMFAWSLSMWTSADWDHSFAWAIAILFGHFLYWRYTGLM
                     LSRSLGQRLLGLAVVRDNGDAMESEDWDQRSVRKLLYLLPVINIWFIVRDVFRMHQRH
                     THQSEIDLAAGSIVAIANSLPVAHRGPIR"
     gene            complement(1358..3340)
                     /locus_tag="HA345_04535"
     CDS             complement(1358..3340)
                     /locus_tag="HA345_04535"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024486.1,HMM:NF024487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84658.1"
                     /translation="MGRDDGRVHRIDTSGTKELESPISRKSQDHHARFIEAIRWELDD
                     EMELVEDRLRNWSRARLLAHGVSLFDLKARSAGWMYGMRLLRLSMEKGGPMPSHRFKH
                     GDIVLLSRNEPLGRQAVEGVVARRSRNHIVLAMNDLPKGHRQGIWRIDRGANRIAHDR
                     MRDALNAFLGDEKATSLTGLLLGQGRDIEQSASVDHVIKGGKRSELKDESDLNLTQNE
                     ALNAATTRRLTLIQGPPGTGKTHTAVRILRRWSLEGNAPILAVAESNVAVDNLLQGLL
                     SIGVDAVRLGQPVKVRESLREATLDARMDRHRLQKDLKAIIDLNESLARKISGLKGKE
                     KGLAHKDLKRGWGEARRIEQQMKEDILNTATVICATCIGSGHNILDGRRFPRVLIDEA
                     TQATEPATLVPIVRGCRQLVLVGDHRQLPPTVISRRAEKGGLGVSLFDRMRERGVHSI
                     MLKEQYRMHPIISQFPSMQYYDDALINGVKAEERPAPAGLIWPDFDRPVAFLPIEGGE
                     VVSEDGHSRANPAEASCVVRILSMLLEPGDLNTTDIGVITPYNGQVRVILDLLEQSGG
                     TTLGDRWHGIEVRSVDGYQGREKEVIILSTVRSNPEGEIGFLDDSRRLNVAITRAKRG
                     LIVIGDQNTLRNQRDWDFWLTWAQERSLMAWHLLHM"
     gene            3477..4745
                     /locus_tag="HA345_04540"
     CDS             3477..4745
                     /locus_tag="HA345_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84659.1"
                     /translation="MFGRRKKEETKDGLTCPLCTLENPLSAESCSRCYYDFTVGTHQQ
                     SRSSDEKVVNSLLNELNAEVSDSEEDGIDVDWTGHSFDMSDLSVEVSDYGDSEDVTVS
                     STVGFARQLVSNEEVGSEEEEEDYTLTSDDAPSSVEKFVVPEGEEEDLSIPEPTRIAI
                     VDPVSKEGPGMDEDLLTADWSESDTAPVLPQNETDEMEPPPDNSVPTSMPVMPAMPAV
                     NPESIETVTPPESESQDVSAPPPAVESHPVAAPPPEAFANTNPASLPTLPGAPPPVQP
                     NVQPAPQPSIPAMPIVPSAPSPSPATTPVAVPMPNLPTAPVAPPGVASASPLPLWPWP
                     QAEPWDDRLLAGKVKNAMEAAKMNRKEEAVLILDEIGPHLGDRTRLMLYIGALLKSLG
                     RSDDLSSMLEIARKDYTDDEHVLAALKQLS"
     gene            4771..5367
                     /locus_tag="HA345_04545"
     CDS             4771..5367
                     /locus_tag="HA345_04545"
                     /inference="COORDINATES: protein motif:HMM:NF024698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HIH84660.1"
                     /translation="MHPTQMSHPAGEEHVLVPLKEVDVMKIVEMFREDPDSVHRAMPW
                     LSRNEPIGPQIASFIVDVSSGPNASNYHHWLIRENVGGGYLGIIGFDVVRFRTPEQQR
                     TRRGIHWNLGYWIAPEERGHGLATMSINAMISVARQCEVDVVELMADPRNEGGVRTIL
                     SAVERYDGFPSEVERWVTSDDSNDVLYVSYWITTGGIR"
     gene            5367..6188
                     /locus_tag="HA345_04550"
     CDS             5367..6188
                     /locus_tag="HA345_04550"
                     /inference="COORDINATES: protein motif:HMM:NF013672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HIH84661.1"
                     /translation="MQRIWCSLDTDDVHHHPTISGHPSRSKDTPWPQNQSLRTMSERL
                     TRGFDGFESWWSSQSEDSRVTFFVIGEQLEDPNFVQRLQYIIGLRPGITIGVHGWNHI
                     CWSAWGPRPDEFKSILEKSIELISFKVGSAFRPWFRAPGGYIAPWMAPVLASVGISMD
                     SSINPVFLLRHKTGRDTLGKVNGWESIRESMVAASIVEREWYTRNHLPVNGPALHHPA
                     LRFHSRLSWRRLRSAEHANDEEILSKSDAVVSVYWHLLDHARLNGHWQPPLQILK"
     gene            6262..>6880
                     /locus_tag="HA345_04555"
     CDS             6262..>6880
                     /locus_tag="HA345_04555"
                     /inference="COORDINATES: protein motif:HMM:NF012584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84662.1"
                     /translation="MVVHSFRLPDIGEGVVEGEVVEWLVAVGESIVEDQPLLSVMTDK
                     ATVDIPSPVTGVVTRLTGDVGDILPVGQICAEFEIENEETSQPPSSSDLEVGHSSSSD
                     ELPSTGESEAIPSINPISTADDPEEIVEWRDSIIAVNQHKGSLRAHQILSNTVEAAKE
                     AGVPVGELTETPYLNTIPPHQEPDYPGDIDTENRILDILRWNAMMM"
BASE COUNT         1736 a         1665 c         1659 g         1820 t
ORIGIN      
        1 tggccccatt ggagatccag caggcggccc ccttgcccca ggtcccattt gaggtccagc
       61 ttctatcgtt gattcaggtg aatcagtagg agtatttgca gtcacaattt ctgaagtttc
      121 aggtgagatt ggtggagatg gaaccggtgg tgtaggcgga gattgtggca cctgttgcac
      181 tgtatcaggt gttgaagtgc gaatttgtgc ggctcctgaa ttcatgaatg ccgctgcaag
      241 tggatcgtct ccattcatct gaattgctgc atctgttgtt gtttcagagc cgaagctaga
      301 gagcgcagat tggaaggcat cagcaaaagc atcacctcca gtgcttgaat tactagtcga
      361 agtagatgag attgattcgg agagggaagg agcctcaatc acatgccgat gaccatcagg
      421 gaaggggccc aattctccac gtagaccagc atgagtgact gaaagcatcc aggcaccgca
      481 gccaatagga aggaagaaca tcgcctcgtt tgcagtgcca gaagggatgt ttgatggaag
      541 tgccttgaaa acactagtta ttgcaccaga ggtctcaatc gatagcgaaa ttccagaagc
      601 atcttccgaa ctgctattct ggactacaat tccaatgaga attgcatccc ggtcctcctc
      661 gtcaatgtca ttctggatac tagtaatgtg aacgacgatg tctccgatac ggagcgtcgt
      721 cggaagggcc atgacgaaag cagggggaga ttcgatactt gaaatcgttc catgtggtct
      781 tcagcgaatg ggccctcggt gagcgacagg gagcgaattc gcaatagcca cgatgcttcc
      841 tgcggcaagg tcaatctcac tctgatgtgt atgccgctga tgcatacgaa acacatcgcg
      901 aacaatgaac cagatattga ttactggaag tagatagagc aacttacgaa cggaccgttg
      961 atcccaatct tctgactcca tggcatcacc attatctcga acgactgcca agcctagaag
     1021 acgctgtcct aaagatcggg atagcatcaa tccagtgtat ctccaataca gaaagtgtcc
     1081 gaacagaatt gcgatggccc atgcaaatga gtggtcccaa tcagcagagg tccacatcga
     1141 tagactccaa gcgaacatca cccgtgatcc tgacagtatt gagagtagag cgttgacgaa
     1201 gattacgtca agcatgaatg caccagctct cttgtgtatc ggagcgagaa tagtcccatc
     1261 aggaattttc caatgcccat gttctactga gacaatatgc ttggcgagat tggtaatgcc
     1321 gccatgtgtc gaaatcgggt ccaaagccat cttcctccta catgtgcagt aggtgccaag
     1381 ccatgaggct tcgttcttgt gcccaagtca gccagaagtc ccaatctctt tgatttctca
     1441 atgtattttg gtctccgatg acgattaggc cacgttttgc tcgagttatc gccacattca
     1501 atcgtcgtga atcatcaaga aatccaatct caccttccgg gtttgatctg actgttgaga
     1561 ggattatgac ctctttttct cgaccctgat atccatcaac tgatctcact tctataccat
     1621 gccaacggtc gcctaacgtg gtgccacctg actgttcaag tagatctaag attactcgca
     1681 cttgtccatt gtagggagta ataactccaa tgtcagtagt attgagatca ccaggctcaa
     1741 gcagcatact gagtatacga actacacacg aggcttcagc aggattcgcc cgcgaatgtc
     1801 catcttcaga gactacctcg cctccttcga ttggtaggaa agctacaggt ctatcgaaat
     1861 caggccatat tagaccggca ggagcgggtc gttcttctgc cttcacacca ttgatgagag
     1921 catcgtcata atattgcata gatggaaact gtgagataat tgggtgcatc cgatattgct
     1981 ccttgagcat gattgaatgg accccacgtt ccctcatgcg gtcgaataga gatactccca
     2041 aaccaccttt ttctgccctc cttgagataa cggttggagg taattgtcga tgatcaccaa
     2101 caaggacaag ttgtctacag ccacgcacaa ttggaacaag cgtcgctggt tctgtagctt
     2161 gggtcgcctc atcaattaga actcgtggaa atcttcgacc atcaaggata ttgtgacctg
     2221 atccaataca agttgcacag ataaccgttg ctgtgttcag tatgtcttct ttcatctgtt
     2281 gctcaatacg ccgtgcttca ccccagcccc gcttgagatc cttgtgagca agccccttct
     2341 ctttgccctt taatccggat atctttcgtg caaggctctc gtttagatct atgatcgcct
     2401 tcagatcttt ttgaagccga tgtcggtcca ttcttgcatc aagggttgct tcccgtaggg
     2461 attctcggac ttttacgggc tgtcctaacc gcacagcatc gactccaatc gaaaggagtc
     2521 cctgtaacag gttgtcaact gcaacatttg attcagctac agcgagaatc ggtgcatttc
     2581 cttctaatga ccatctccga agaattcgaa ctgctgtgtg tgtcttacca gtacctggag
     2641 gtccttgaat aagtgtcagt cgccgcgtag tcgccgcatt gagagcctcg ttttgggtta
     2701 aattgagatc gctttcatcc ttcaattcgg atcttttacc acccttgata acatgatcta
     2761 cactggcaga ttgttctata tcgcgaccct gtccaagaag tagacccgtt agcgaagtcg
     2821 ctttttcgtc tccaaggaag gcgtttaacg catctctcat gcgatcatga gcaattcgat
     2881 tagcacctcg atcaatacgc caaatccctt gtcgatgtcc tttcgggagg tcattcatgg
     2941 cgagaacgat atgattccga cttcttcgag ctacaactcc ttctaccgcc tgtcggccaa
     3001 gaggctcgtt tcgacttaga agaacgatat ctccatgctt gaaacggtgt gatggcatcg
     3061 gccctccttt ttccatactt aatcggagta gacgcattcc atacatccat cctgctgaac
     3121 gtgctttgag atcgaagaga cttactccat gagcaagtaa ccttgcacga ctccagtttc
     3181 tcaaacggtc ctcaaccagt tccatttcat cgtcaagctc ccatcgaatc gcttcgatga
     3241 atcgagcatg gtgatcctga ctctttcttg agattggaga ttccagttcc ttcgtaccag
     3301 aggtatcaat gcgatgaaca cgtccatcgt cacgacccat ggtatggggg tatagtcatc
     3361 gtctatggtc cctcccatgc gaacagtttg gcccctgaag ggcaattgca tcaacaggga
     3421 cagggaggac ttaaccacgg tctgcattac ggtgcaaaca ccgggggatg gaatcggtgt
     3481 ttggacggcg gaagaaggag gagacaaagg atgggctaac ctgccctcta tgtactctcg
     3541 agaatccttt gagtgctgag tcctgttcaa gatgctatta tgatttcaca gtcggaactc
     3601 accaacagtc tcggagttct gatgaaaagg tggtgaattc acttctcaat gagctgaatg
     3661 ccgaagtttc agattctgaa gaggatggta tcgatgtgga ttggactggc cattccttcg
     3721 atatgagcga tcttagcgtg gaagtcagcg attatggcga ttcagaggat gtcacggttt
     3781 catcgacggt tggttttgct cgtcaactag tcagtaatga agaggtaggt agtgaagagg
     3841 aagaagagga ttacactctc acaagcgacg acgccccttc atcggtcgag aagtttgttg
     3901 ttccagaagg ggaagaggaa gacctctcca tccctgaacc tacacgtatt gccattgtcg
     3961 acccagtatc aaaggaaggt cccggaatgg acgaggacct actaacggcg gattggtcag
     4021 aatcggacac tgcgccggta ttgcctcaga atgaaaccga tgagatggaa ccccctccag
     4081 ataattcagt tccgacttcg atgcctgtta tgccggcaat gcctgccgtt aatccagaat
     4141 caattgaaac agtaacccct cccgagtcag agtctcaaga tgtgtcagcc cctcctcctg
     4201 cagttgaatc tcatccagtt gctgcccctc ctccagaagc gtttgctaac actaatcctg
     4261 caagtcttcc gactcttcct ggagcccctc caccagtaca gcccaacgta caacctgctc
     4321 ctcaaccttc gataccagca atgccaattg tgccgtctgc cccttcacca tcacccgcta
     4381 caactccagt agcggttcca atgccgaatc tccctactgc ccccgtggct cctcctggag
     4441 ttgcttctgc gagccccctg cctctttggc cttggccgca agcggaacct tgggatgatc
     4501 gtcttcttgc tggcaaggtg aagaacgcaa tggaggcggc taaaatgaac aggaaagagg
     4561 aagctgtcct gattctagat gagattggcc cccatcttgg agatcgaacg cgattgatgc
     4621 tctacattgg cgctctactg aagagtctag gacgttcaga tgatctatcg tccatgcttg
     4681 agattgcacg taaggattac acggatgatg agcatgtcct tgctgccctc aaacagttga
     4741 gttgaatcac tgtcttgtca tgcgacattc gtgcacccca ctcaaatgag tcatccagca
     4801 ggcgaggagc atgtccttgt ccctctaaag gaggtggatg tgatgaaaat agtcgagatg
     4861 ttcagggaag accctgactc tgtgcatcgt gctatgccat ggttgtctcg taacgagcca
     4921 atagggcctc aaattgcctc atttattgtc gacgtatcct cgggaccgaa tgcttcgaat
     4981 taccatcatt ggttaattcg agagaatgtt ggaggaggat atctcggtat tatcggattc
     5041 gatgtagttc gatttagaac tcctgaacag cagaggaccc ggagaggtat ccattggaac
     5101 ctcggttatt ggattgcacc cgaggagcgg gggcatggtc ttgctacgat gagcatcaat
     5161 gctatgattt ccgtagcaag acaatgtgaa gtggatgtgg ttgagttgat ggcggatccg
     5221 cggaatgaag gaggcgttcg tactatactt tctgcggttg agcggtatga tggattccca
     5281 tccgaggtag aacgatgggt gacatctgat gacagtaatg atgtactgta tgtatcgtat
     5341 tggattacca ctggaggcat tagataatgc aacgaatctg gtgctccctt gatacagatg
     5401 atgttcatca tcatccaaca atatctggtc accctagccg ttctaaggat actccttggc
     5461 cacaaaatca atctcttcga acgatgagtg agcgtttaac tcgaggtttt gatggctttg
     5521 agtcttggtg gtcttcacag tctgaggatt caagagtcac cttctttgtg attggcgaac
     5581 aacttgagga ccccaatttc gttcaacgtt tacagtatat tattggatta aggcctggta
     5641 ttaccattgg tgtccatggc tggaatcata tttgttggtc tgcatggggc cctcgtcccg
     5701 atgaattcaa atcaatcctt gagaaatcca tcgaacttat ttctttcaaa gtaggttcag
     5761 ctttccgacc ttggttcaga gcacctggag gatatattgc accttggatg gcacccgtac
     5821 tcgcctccgt aggcatctcc atggactcct cgataaatcc agtttttctt cttcgtcaca
     5881 agacaggtcg tgatacctta ggcaaggtca acggatggga atcgattcgg gaatcaatgg
     5941 ttgcagcgag tatcgttgaa cgagaatggt acacacgtaa tcatctgcct gtaaatggac
     6001 ctgctctcca ccaccccgct cttcgatttc attctcgtct ttcatggagg agattaagga
     6061 gtgcagaaca tgcaaatgat gaggaaatcc tatccaaatc tgatgctgtg gtgagtgtct
     6121 attggcactt attggatcat gcacgtttga atggacattg gcaaccacct cttcagattc
     6181 tgaaatagta tgactctact gaattcataa tgcataaatg caggtgtgca gagcaatact
     6241 caacaagagg ttggttgaga catggtcgtt cattcctttc gccttccaga tattggagag
     6301 ggcgttgttg aaggagaggt agttgaatgg ctcgtggccg tcggggaatc tattgttgag
     6361 gaccaacctc tactctcggt gatgaccgat aaagcaacag tagatattcc atctccagtt
     6421 acaggagtag tcactcgttt aacaggggat gttggagaca ttctcccagt tggtcaaata
     6481 tgtgctgaat ttgagattga aaacgaagaa acatctcaac ccccctccag ctctgattta
     6541 gaggttggcc attcatcttc ttcggatgaa cttccatcaa ccggtgaatc ggaggccatt
     6601 ccaagtatca atccaatctc tacagcggat gaccctgagg aaattgttga atggcgtgat
     6661 tcaattattg cagttaatca gcataagggg tcgttacgcg ctcatcagat tctgtccaat
     6721 actgtagaag cggcaaaaga agccggagtt ccagtcggtg agttaaccga gacgccgtat
     6781 ctcaacacaa tcccccctca tcaggaacct gattacccag gtgatatcga tacagagaat
     6841 cgaatcctag acatccttcg ttggaatgca atgatgatgg
//
LOCUS       DUKB01000136            3785 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_157737, whole genome shotgun sequence.
ACCESSION   DUKB01000136 DUKB01000000
VERSION     DUKB01000136.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3785)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_157737"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            437..691
                     /locus_tag="HA345_04560"
     CDS             437..691
                     /locus_tag="HA345_04560"
                     /inference="COORDINATES: protein motif:HMM:NF024378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3860 domain-containing protein"
                     /protein_id="HIH84663.1"
                     /translation="MSRTKRLREEVRSLLEKKGEANTVEIFDHLNTRFSWGATMNQVR
                     NILAKDIRFEKIGHVRDFFRGGRYTVCIWALRQVSVAAES"
     gene            731..1624
                     /gene="ubiA"
                     /locus_tag="HA345_04565"
     CDS             731..1624
                     /gene="ubiA"
                     /locus_tag="HA345_04565"
                     /inference="COORDINATES: protein motif:HMM:NF013226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HIH84664.1"
                     /translation="MGLSDASQLMRLPNTLIGGGTVFVGGLLGGAEVTADWVTVSLHS
                     VSVIAFMGCWNIFNDIMDIDVDRNNRPDRPLASGRVSIDDARSFAIGLLTLSVFGLLG
                     AAGWVTYNGFDLATWLPSLPIWFAALLLMVHYEFEGGNSLRLKHKGLPGNIAVSLLVG
                     IVIVFGAASVGGLSNPLVWMVGLTAFCINSAREIIKDVEDMEGDIGRETLSMQIGPNR
                     ARTIAWLMTLLGFASLFLPFAIEVLPSGMLLLLTPSILAILAAKPRIHQGDDHGAQRM
                     LRLAILLGMVGFAVAALLQNA"
     gene            complement(1627..2580)
                     /gene="argF"
                     /locus_tag="HA345_04570"
     CDS             complement(1627..2580)
                     /gene="argF"
                     /locus_tag="HA345_04570"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HIH84665.1"
                     /translation="MELRHLLSIDDLAPEELREIVEWAISVKLDDGLFEEFTPLSGMT
                     IGSIYEKPSTRTRVSFEVGIDRLGGNPLTLLKNDIQLGSSETVADTAAVLSRYLGAIT
                     YRCFAHGDVVELAAGAQVPVINALSDLHHPCQAAADVMTILENHPNSEDVRIAWIGDG
                     NNVLHDLMLAAAALGMSITYAVPKGYEPDADVVKRTDKLAKESGAEIRMTHDPVDAVT
                     GANVIYTDVFVSMGEEHISDKMSDFSGFQVNEELVENADDDYIFMHCLPAHRGEEVTD
                     GVMDSNNSVVFDQAENRMWAQMSLLTFLIHPAAWAAFAELH"
     gene            complement(2583..3428)
                     /locus_tag="HA345_04575"
     CDS             complement(2583..3428)
                     /locus_tag="HA345_04575"
                     /inference="COORDINATES: protein motif:HMM:NF015018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HIH84666.1"
                     /translation="MSNTDGTTPPVLFVVGTAGAGKSSLVTAFQRWARFLEVDALTIN
                     LDPGAERVHYDPEFDVRDLISLSEVMDRYDLGPNGAQILAADLVASQAHDIMDELEGL
                     HGDMLVIDTPGQVELFAFREASNHLVDVLGQGRAALVFLFDPMLSQTPSGFVSQMLLS
                     NIVQFRLALPTANFLSKADLLEPEVLEKILEWGERLDVLEADLYEESANRLQADIATG
                     QRVEFAIAQLRTMQDASIIPGLIPLSSEHEEGLADVLTFVQGIYGGMADMRDGFAADL
                     DEERN"
     gene            complement(3665..3785)
                     /locus_tag="HA345_04580"
                     /pseudo
     CDS             complement(3665..3785)
                     /locus_tag="HA345_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003904898.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PE family protein"
BASE COUNT          892 a          937 c          936 g         1020 t
ORIGIN      
        1 tggaccgaac tacactacac gagcagtaat ttcatccaaa tccactctgt atatgaaaca
       61 aaccatctcc gagtatatcg aagaataact gaaagtgaaa agcgcaaaat tacaggttca
      121 cattctattc catcttcact ttcagtttac tctctatttc gttccttcat atgctccagc
      181 acgatgtagt gccatgaacg cacaccaagc cttctacaga acgaccaccc gaattgtagg
      241 tctctctact ctacaatcct ctggggctgt aaatgaacca cgagatggct ccctagtgag
      301 ctcatcgggt cgtgtgaatg ggatgcctga atctaggttt gcaggtccga tcgataggca
      361 aaaggtatcc gagatgcctc gaagttggtt gagtctccat cgtcgtgcta acccacgtgc
      421 accggaggtg caatgaatga gtcggacaaa gagactccgt gaggaagtac gcagtctgct
      481 tgagaagaag ggggaagcga atactgtgga gatatttgat catctcaaca cacgtttctc
      541 ttggggtgca acgatgaatc aggtacgtaa tattcttgca aaggatatac gatttgagaa
      601 gattggacac gttcgtgatt tctttcgagg tgggcgttat accgtttgca tttgggcgct
      661 acgccaggtg tcagttgctg ctgaatccta agcgattcga tgaaatgccg acttccattc
      721 cattcgttca atgggcctaa gtgacgcttc acagttgatg cgtcttccaa acactctgat
      781 tggtgggggg acagtattcg taggcggcct tcttgggggg gctgaagtta ctgcggattg
      841 ggtaacagta agcctacact ctgtcagtgt catcgctttc atgggttgtt ggaatatatt
      901 caacgatatc atggatatag atgtagatcg aaacaatcgt ccagatcgcc cccttgcatc
      961 tggtagggtt agcatagatg acgcacggtc gtttgcaatt ggtctcctca cgctttctgt
     1021 tttcggattg ttgggtgctg ctggctgggt cacgtacaat ggtttcgacc tcgctacctg
     1081 gcttccatcg ttaccaatct ggtttgctgc attactgttg atggttcact atgagttcga
     1141 aggtggcaat agccttcgat tgaagcacaa aggtttgcca ggaaatattg ctgtgagcct
     1201 cttagttggc attgtcatcg tttttggtgc agcatcagtt ggaggtttgt ccaacccatt
     1261 ggtatggatg gttggtctta cggcgttctg tatcaatagc gctcgtgaga ttatcaagga
     1321 tgtcgaagat atggagggtg acatcggccg tgagacctta tcgatgcaga ttggtccaaa
     1381 cagagctcgg acgattgctt ggctgatgac gttacttggt tttgcatcac tgttcttacc
     1441 tttcgccatc gaagttctac cttcagggat gcttcttctt ctcacgccct cgattcttgc
     1501 gattctcgct gcaaagcctc gaattcacca aggcgatgat catggtgcgc aacggatgtt
     1561 acgtctggcg attcttttgg gcatggtcgg gttcgccgtc gcagcgttac ttcagaatgc
     1621 ctgacttcaa tgaagttcag caaaggcagc ccacgcagcg gggtggatga ggaaggttaa
     1681 caacgacatt tgagcccaca ttcgattctc tgcttggtcg aatactacgc tgttattcga
     1741 atccattact ccatcagtga cttcttcgcc acggtgagcc ggaagacaat gcatgaagat
     1801 gtaatcatca tctgcgtttt ctacaagttc ctcattgact tgaaatccgc tgaaatcact
     1861 catcttgtcg gagatatgct cttctcccat cgatacgaaa acatcggtgt agatcacatt
     1921 cgctccagtt actgcatcga ctgggtcatg agtcatccga atctctgccc cactttcttt
     1981 ggcgagttta tcggtacgct ttacgacatc cgcatcgggt tcgtatccct tcggcacagc
     2041 ataggtaatt gacatcccta gtgcagctgc tgcaagcatc aaatcatgga ggacgttatt
     2101 tccgtctcct atccaagcaa ttctcacatc ttctgaatta ggatggttct caaggatcgt
     2161 catcacatct gccgctgcct gacatgggtg gtgaaggtct gagagtgcat tgatgactgg
     2221 cacctgtgca cctgcggcaa gttcaaccac atctccatgg gcaaagcatc ggtaggtaat
     2281 tgcaccaagg taccgtgaaa gtacagcagc agtatcagcc actgtttcgg acgaaccaag
     2341 ttgtatgtcg ttcttgagca gagtcaatgg atttccacct aatcggtcta taccaacttc
     2401 gaatgacaca cgtgttcggg tcgacggctt ctcgtaaatt gaaccaattg tcatacctga
     2461 aaggggggtg aactcttcga atagaccatc atctagtttt actgagatgg cccactctac
     2521 aatctcccgt aactcctctg gggcgaggtc atctattgag agtaaatgac gtaattccat
     2581 tctcaattac gctcctcgtc aaggtcagcc gcgaaaccat ccctcatgtc tgccattccg
     2641 ccatagattc cttggacaaa cgtcaacaca tcggctaggc cttcttcatg ctcggaggat
     2701 agtgggataa ggccaggtat gatggatgca tcttgcattg tacgcaattg agcgatagca
     2761 aattccactc gctgaccagt ggctatgtcg gcctgaaggc gattagcgga ttcttcatac
     2821 aaatcagctt caagaacatc gagtcgctct ccccattcga gaatcttttc cagaacttcg
     2881 ggttcaagca aatccgcctt tgataggaag ttggctgttg gaagggcgag tcggaattgc
     2941 acgatgtttg agagtaacat ctgtgagacg aagccagatg gggtttgcga gagcatcggg
     3001 tcaaagagga atacaagggc tgctcgtcct tggccaagca catctacgag gtggttggat
     3061 gcttcacgga aggcgaatag ttcgacctgc cctggcgtat cgattaccag catatcgcca
     3121 tggagccctt ctagttcatc catgatgtcg tgtgcttgtg aggcgacgag gtcggcggca
     3181 agaatttgtg caccgtttgg tccgagatca taacgatcca tcacttcgga tagtgagatt
     3241 aggtctctaa catcgaactc agggtcataa tggactcgtt ctgccccagg atcaaggttt
     3301 attgtgagtg catcgacctc taagaatcgg gcccatcgtt ggaatgctgt gacgagcgaa
     3361 ctcttgccgg ctccagcggt accgacaacg aatagtacag gaggcgtggt tccatcagtg
     3421 ttagacatgg agatgcatgc catgaccacg gttcttcaag cattgggatt ctatatctgt
     3481 taaagtgtcc aaccggtttc aaccatttct tgttgcagaa tggttataca atcaacaaca
     3541 ctgttacggc gtagcggcca tgttgtgccg cggagatgat gttgatgagc gacgatgaag
     3601 tcccaccccc cccacctgga atgaacgccc cccctcctcc ccttggaatg ccacctgctc
     3661 cgccaggtgc tgccccacca tctcctcctg gaatgccacc tgctccacct agtgtcgctc
     3721 cgcctcctat gccgcctatg ggtgcgcccc cggcacctcc agcacctcca atggatgcgc
     3781 ctcca
//
LOCUS       DUKB01000137            7878 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_118398, whole genome shotgun sequence.
ACCESSION   DUKB01000137 DUKB01000000
VERSION     DUKB01000137.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7878)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7878)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7878
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_118398"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="HA345_04585"
     CDS             complement(<1..343)
                     /locus_tag="HA345_04585"
                     /inference="COORDINATES: protein motif:HMM:NF012792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HIH84667.1"
                     /translation="MPQSEWENLTSPLAIPDAEQITNLLHRTTGERLTIDRVLMYPID
                     HGGAIVTRNEGKIICCLIWIISESDAARIIGFGVDPLHQSMGFGTRCWSVLNEYVRAA
                     GLTRITLEVRAD"
     gene            complement(344..1384)
                     /locus_tag="HA345_04590"
     CDS             complement(344..1384)
                     /locus_tag="HA345_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84668.1"
                     /translation="MSDRRRSGNRGKRRGGRSSSGSDKKRSDLFKDLENLPLHRIEEM
                     LREIQSDIRSTEAQSESLRNERRQLIEIVTILRESLKKGREDTDEKRALRKQLSTFQN
                     QRQEAQKFRDEANQRVPPVIDQIIDSLKHRHRLLTTMMNDLNEMPTLEDEIRLFQGFL
                     EYQAMYEVKTQSMEAHKRMIAAIEGIRSIMKQFEEIDAKGKERKKNVAESTPRIEEDD
                     VGWTEVRRISSRIEEIDKMHRECRSDRGKLMRERGRLQAFLKIRESGRGAEYIDPDEV
                     KEKAASGGTLSISDLDTLLASGGLSEIGKVEVKDTAQGEKRKRKRNRRSGTSRSRPRE
                     TNIGRERDQRGA"
     gene            complement(1381..2112)
                     /locus_tag="HA345_04595"
     CDS             complement(1381..2112)
                     /locus_tag="HA345_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84669.1"
                     /translation="MQNAYDTLKPKYLKKMDEINRFRMERDEAHSEAKELRIKVEKLQ
                     EDLAKTGQMKSLDPRWKKDKLLSELDSIDDRIQTSALDHVEERKLLEERRRLIRRNDD
                     WLEERKQANPELASYVQARRDMSRLYQSGNKAHQDMIQTLEKSVSSRKTFNQTRKDLR
                     DSKTQLEAAGRLMAESDQAISYWTRRKEEGIGEIEPNPMLKEPKFHIHNLGEKAQRIR
                     DGNISSAGKRRNKRNRKKAEEVEEE"
     gene            2319..3878
                     /locus_tag="HA345_04600"
     CDS             2319..3878
                     /locus_tag="HA345_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84670.1"
                     /translation="METGCMGAKRWVNLALIILFVPLLSQSVSADSGASLSMAGSRGA
                     IFGGDPPHVGDSVDLSVLVHNDGDTVGNAYMVAIIGGVETTGPVIEIGPGSSREVSSS
                     LSPITNGSLDVAWSIESNDSVIGTNLSGNSPLLVSPAQEITLSEPLYTWTVEDGLRVT
                     FETTLDSGRNRSVLLVVDGTKSSQTIQLQEHALILSPGSRMHELVLGSPDISGLQIEV
                     RPDGWSAPQPAIVSVSISAPVIDASIAVNGATPSLPSAGDVVVIGVKVDNTGNDVIAD
                     ARLRLIDAATGYVLADQILTDMGGGTSNEFDVTISPWPSGNPVVIRAVVTAEDLSIET
                     TLSIESAVTVEDVAGISVPWVPIGVGIVVGLILSFAARSAFKERNSSIGMDKSSKRVV
                     ERKDVPDDDRKREVECPECNRSLLIPWAYDGRARCAPPCSTEFTVPSPPLENAVEEVM
                     KDVLTEPEDPLSDDIDLIKQDEPEKLFSMSATDLLDCPSCSQTLKAGLELRPVLIRCP
                     ACKTEFEAREG"
     gene            3882..4316
                     /locus_tag="HA345_04605"
     CDS             3882..4316
                     /locus_tag="HA345_04605"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013490.1,HMM:NF014762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HIH84671.1"
                     /translation="MEGATEFEEMYIKRIYEEHCREPGEIVRTSQLAERMSVSSASVT
                     EMIQRLAARDLVTYIPYKGCRLTPSGFHYGALVKRRQLLIEILLHDVLKIEEGVEKIA
                     CKMEHAVDEVVEQALEQLFDYPSETFDGRRIPDVGRVNPNQD"
     gene            4430..6139
                     /locus_tag="HA345_04610"
     CDS             4430..6139
                     /locus_tag="HA345_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84672.1"
                     /translation="MTDDGTGASSGEESESEAPVEDVESGELPSPSDLDTAFLEGQEQ
                     KSEGHGDEEVAPSEPVGDDSDTSVDMVASAESLNLSIESIRSAEMKWLAIDERFLSSG
                     LRLLHLLPILAALLVALSRTFRDQSPNWWVDFVQGDSSNIWSFGLILTLFGIVVLCTY
                     LIALFVTIRRIRLTIQNVKRESDLQELDGRDFRSVHGHSSLTSRINLVLGQHVLTAAL
                     ILLSVILMLASIVLQTVSNDLNIQAELMTMGAAALLIGYGIHLVNLKDTFSTVKPHGL
                     LRIYDPPVHPALLTHPFRDVVGTHLDPLLAAKVSGFIHDLEGNLIDRVQTEEGVQDRV
                     LHLLYLEQHCGLKRADMKAALGDILDEEGVSRVLSEEWDETWRSLITHSRDRIRPYFR
                     LHDRLLHNAVDISEGKRPPGGLWFDIDIENLIEGEAHLFTFVHNGTTEEQELVVRIQT
                     PDFSPKETHYSVRLPTGSMETLMGLESTAEVKSAMGEMFNDSKIIWQTLIPRASGEST
                     VTVRLEDRDGNLLSGKVATVQVQPDMLRRLRWWTGLTSMLTGTAAVLWLLILPILGFI
                     GGF"
     gene            6191..7177
                     /locus_tag="HA345_04615"
     CDS             6191..7177
                     /locus_tag="HA345_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84673.1"
                     /translation="MSAEEDVGDDDLHQRLHAMETKLRRLKQSRNGHSDNARSYAAQR
                     NAIQAQRKELQADIDERLSEQKKVRDKGNIQRTRRDGIQEQIRILIDRSKAGRNHHNK
                     AKSKVVQLAETVGDIERISHRIETDGTLSLEAENKMVKKLKVLEAKRQELLPDVEEDA
                     RITVDLEDIEGSIQTLRAEADAAHQAFVDAMNTADEMWEALKERFEERDQLSAEADRH
                     HQAMLEERKKADEFHEQLSALLDEVNEIRDELNQQRLEAEKWVTDHNESVRKARKTPD
                     KDKDLAESLTDMLLSGGSVTLGGTRPDEGQSLSNRGKKRRRRSAGGGRRTGN"
     gene            7274..7510
                     /locus_tag="HA345_04620"
     CDS             7274..7510
                     /locus_tag="HA345_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84674.1"
                     /translation="MAADHAERSYDRSWDEIEDMLDLANERAIEWRSWFEECKNNGDR
                     EGMKEAARNYKALEGVVKTLKWVLGERGVDHPLD"
     gene            complement(7511..>7878)
                     /locus_tag="HA345_04625"
     CDS             complement(7511..>7878)
                     /locus_tag="HA345_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015043798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84675.1"
                     /translation="MHDLTLGNTPFGTFDEVKAEVDHVLELIAQNQRLPVVTFSAGGI
                     ATPADAALMMRHGMDGIFVGSGIFKSSDPERTAEAIVLAAHHHADAGKVAEACQMIGE
                     AMPGLEIETLDVHMEKRGW"
BASE COUNT         1827 a         1853 c         2002 g         2196 t
ORIGIN      
        1 tatcggctcg tacttcaaga gtaattctgg taagtccagc cgctctcaca tattcgttta
       61 ggactgacca gcatcgagtt ccgaatccca ttgattggtg cagtggatct acgccgaatc
      121 cgattatacg agcagcatca gattccgata taatccaaat taaacaacag atgattttgc
      181 cttcattcct cgtgacaatc gctccaccat gatctatcgg atacattagg acacgatcaa
      241 tagtgagtcg ttctccagtg gttctatgga gtaggttggt aatctgctcc gcatctggaa
      301 tagctagggg cgaggttaga ttctcccatt cagattgtgg cattcaggcg cccctctggt
      361 cgcgttcccg gccgatgttt gtttcacgag ggcggcttcg agatgttccc gatcttcgat
      421 tccgtttcct cttccgcttc tcgccctgag cggtatcctt cacttcgacc ttaccaatct
      481 cggacaatcc tcctgatgcg agcagagtat ctaggtcgga gattgaaagt gtccctccac
      541 tggcagcctt ctcctttacc tcatcaggat cgatgtattc ggccccccta ccactctcgc
      601 gtattttgag gaaggcttgg aggcgccccc tctcccgcat gagttttcct cgatctgatc
      661 gacattcgcg atgcatcttg tcaatctctt caattcgtga agagattcga cggacttcag
      721 tccaaccaac gtcgtcttcc tcaatcctgg gagtggattc agcgacattt ttcttccgtt
      781 ctttcccctt tgcatcaatt tcttcgaatt gcttcatgat ggaacgtatt ccttctatcg
      841 cagcaatcat acgtttgtga gcctccattg attgggtctt gacctcatac attgcctgat
      901 actcaaggaa gccctggaat aggcggatct cgtcctctaa ggtgggcatc tcgttgagat
      961 cgttcatcat cgtagtaaga agccgatgtc tgtgcttgag tgaatcgata atttgatcga
     1021 taacaggagg tactctttga ttcgcctcat cacgaaactt ctgtgcttct tgacgttgat
     1081 tttggaaggt agagagttgc ttcctgagtg ctcgcttttc gtcagtatct tcgcgccctt
     1141 tcttgaggga ttcacgtagg atagtcacga tttcaatcaa ttgcctccgc tcattccgga
     1201 gtgattctga ctgggcctct gtactccgaa tatcactctg tatctcacga agcatctctt
     1261 cgattcggtg gaggggcaga ttctcaaggt ctttgaatag gtctgagcgc ttcttgtcgg
     1321 atccactact agatcgtcct cctcggcgct tacctcggtt cccagagcga cgtctatcac
     1381 tcattcttcc tccacctcct ctgccttttt gcgattccgc ttattccgtc gttttccagc
     1441 tgaagaaata tttccatctc gaatgcgctg agccttttca ccaagattgt ggatgtggaa
     1501 tttcggttcc ttaagcattg gattaggttc gatttctccg atgccttctt ccttcctccg
     1561 tgtccagtaa gaaatggctt gatcggattc agccattagg cgtccagcag cttctaattg
     1621 ggtcttagaa tcacgaaggt ctttccgagt ctggttgaat gtcttcctcg atgaaacgga
     1681 tttctcaaga gtttgaatca tgtcctgatg agctttattt ccactttgat agaggcgtga
     1741 catgtccctt cgtgcttgta catatgaggc aagttcaggg ttcgcctgct ttctctcctc
     1801 tagccaatcg tcgtttctac ggatgagtcg gcgccgttct tcgaggagtt tacgctcctc
     1861 tacatggtct agagcggacg tttggatacg gtcgtcgatt gagtccaact ctgaaagtaa
     1921 tttgtctttc ttccaacgtg ggtctaaact cttcatctga cctgtctttg ccaaatcctc
     1981 ctggagtttc tctaccttga ttcggagttc tttggcttca gaatgggcct catcccgttc
     2041 cattctgaag cgatttatct catccatttt cttcaggtac tttggcttga gtgtatcata
     2101 tgcgttctgc atttgatccc gagtctcctc aaggccttga atcatgtatg ggagttgatc
     2161 ttgcagaagt cgacgccgta tcaatagtag gtcgatgatc ccttccgggg gcacatttac
     2221 cagttcctcg gcggacatct cgatgtcgac caactgtaag gggtggataa agccaaccgt
     2281 tgacaatctt gaatcaggaa cccctatggt tcacgggcgt ggagaccggg tgtatggggg
     2341 cgaaacgttg ggtcaatctc gccctcatta ttctctttgt tccccttctt tctcaatctg
     2401 taagcgctga ttcaggggca tctctttcga tggcaggttc ccgtggcgcc atatttgggg
     2461 gagatcctcc gcatgtcgga gattccgtcg atctatctgt ccttgtgcac aacgatggcg
     2521 acacagttgg taatgcctac atggttgcaa tcatcggagg tgtcgagact acgggtccgg
     2581 ttattgaaat cggtccgggt tcaagtcgag aggtttcatc ttcattgagt cccatcacga
     2641 atggaagcct cgatgtagcg tggtccattg aatcaaatga ttctgttatc ggtaccaatc
     2701 tatctggaaa ttcgcctctt ctcgtttcac ctgcacagga aataacactc tccgaaccac
     2761 tctatacttg gaccgttgag gatggattaa gagtcacatt tgagacaacc ctcgattcag
     2821 ggaggaaccg tagtgttctc ttagtggtgg atggtactaa gtctagtcaa acgattcaac
     2881 tccaagaaca cgcccttatc ttatctcctg ggtctaggat gcacgagttg gtccttgggt
     2941 cgccagatat cagcggcttg cagattgaag ttcgccctga tggttggtcc gccccacagc
     3001 cggcgattgt gtcagtcagt atatctgctc ccgtaattga tgcgagtatt gccgtgaatg
     3061 gagctacacc cagcctccct tctgcagggg atgtagttgt catcggcgtc aaagtggata
     3121 atactggtaa tgacgtaatc gctgatgctc gcctgcgcct cattgacgcc gcgacaggtt
     3181 atgttcttgc agatcagatc ctcaccgata tgggtggagg gacatcgaat gaatttgatg
     3241 tcacaatatc gccttggcca agcgggaatc cagtggttat tcgggcagtg gttaccgcag
     3301 aagatctctc gattgagact actctctcaa tcgaatctgc agtaactgtt gaggatgtcg
     3361 caggtatatc ggtcccttgg gtcccgattg gagttggcat agtagtcggc ctcattctat
     3421 cctttgcggc tcgttcagca ttcaaagaaa gaaactcatc tattggtatg gataagtcat
     3481 caaagcgggt tgttgaaaga aaagatgtgc cggatgacga tcgtaaacgc gaggttgagt
     3541 gccctgaatg caaccgttca ctgttgatcc cgtgggccta cgatggtagg gcgcgctgtg
     3601 ctcctccttg ttcaacagaa ttcacagtac cttctccccc tctcgaaaat gcagtcgaag
     3661 aagtcatgaa ggacgttttg acggagcccg aagatccgtt aagcgatgac attgatttga
     3721 ttaagcaaga tgaacctgag aaattgttct caatgagtgc caccgacctc ttggattgcc
     3781 catcttgttc ccagactctc aaggcaggtc tagaattgcg tccggtattg atacgatgtc
     3841 ccgcatgtaa gacggagttc gaagcaaggg aggggtgaga gatggaaggt gcaactgagt
     3901 ttgaggagat gtacattaag cgcatctatg aggaacattg tagggaacca ggtgagattg
     3961 tccgaaccag ccagttggcg gagagaatga gtgtcagctc agcttccgta actgagatga
     4021 ttcaacgtct tgcagcgaga gatttggtca cctacatccc ttacaagggc tgtcgcctta
     4081 ctccgagtgg ttttcattat ggggctctcg tcaagcgtcg tcaacttttg attgagatcc
     4141 tcttacatga tgttcttaaa attgaggaag gagtagagaa gattgcatgc aagatggagc
     4201 atgcggtcga cgaggttgtc gagcaggcgc ttgaacagtt attcgactac ccctctgaga
     4261 cctttgatgg tcgccgtatc ccagatgtgg gccgagttaa tcctaatcaa gattgagatt
     4321 aatgatggcc ctacaggcgt cgttgattca tagaggatag tgctgaaaac gaaattgtct
     4381 cctaaactcc gcacgaatct tcatgtccat gaggcgaaca atgagtttca tgacggacga
     4441 tggtaccggt gcctcttcgg gtgaagagtc ggaatctgag gctccagtcg aggatgttga
     4501 atccggcgaa cttccgtcac ccagtgacct tgataccgcg ttcttggagg gtcaagagca
     4561 gaaaagtgag ggccatggag atgaagaggt tgctccctcg gaaccggttg gcgatgattc
     4621 agatacttcg gtggatatgg ttgcatcggc agaatccctc aatctttcga ttgaatctat
     4681 cagatcggcc gagatgaagt ggcttgcaat tgacgagagg ttcctctcat ccggccttcg
     4741 tttgctccac ttgcttccca ttcttgctgc attattagtt gctctttccc gtactttccg
     4801 agatcaatct ccaaattggt gggttgattt tgttcaaggt gactctagta atatctggtc
     4861 atttggtttg atcctcactc ttttcggcat cgttgtatta tgtacctact tgattgccct
     4921 ctttgtgacg attcgaagaa ttcgtcttac gatacagaat gtgaaacgtg aatcagatct
     4981 tcaggaactt gatgggcgtg atttccgatc agttcacggc cattcttcgc tgacatccag
     5041 aatcaacctc gttcttgggc aacatgtttt gacagctgcc ttgattctac tttctgtgat
     5101 tctcatgttg gcgtcgattg ttctccaaac cgtcagcaac gatctgaata ttcaggctga
     5161 attgatgaca atgggtgcgg ctgccctatt aatcgggtat gggattcacc ttgtgaattt
     5221 gaaggacaca ttcagtactg tgaagcctca cggtctattg cgaatctacg accctcctgt
     5281 ccaccctgct cttcttactc atccgttccg tgatgtcgta ggtactcacc ttgatccctt
     5341 acttgcagca aaagtatctg gcttcattca tgatttggag ggcaatctaa tagatagggt
     5401 tcagacggaa gaaggagtcc aagatcgagt cctacacctc ctctatcttg agcaacattg
     5461 tggtctaaag cgggctgata tgaaggccgc cttgggagat attctcgatg aagaaggggt
     5521 ttctagagtt cttagtgagg aatgggatga gacttggcgc tctctcatta cacattctcg
     5581 tgaccgaatt cgtccgtatt tccgtcttca tgatcgccta ttgcacaatg ccgttgacat
     5641 tagtgagggt aagcgccctc caggtgggct ttggttcgac atagatatcg agaatctcat
     5701 tgagggagag gcgcacctgt tcacctttgt ccataatggg acgactgaag aacaggaact
     5761 tgtggtaagg attcagacgc ccgactttag ccctaaggag acgcattaca gtgtccgcct
     5821 tcctacaggg agtatggaga ccctgatggg acttgagagt acggctgaag ttaaatcagc
     5881 gatgggggag atgttcaatg attcaaagat catttggcag acactgatac cccgggcttc
     5941 tggtgaatct acagttacag tacgcttgga ggacagggat ggtaatcttc tatcgggcaa
     6001 ggtcgccacc gttcaggtac agccggatat gctcagacgt ctacgttggt ggacgggatt
     6061 gacctcgatg ttgactggaa ccgctgctgt gttgtggctt ctgattctcc cgattctcgg
     6121 ttttattggt ggattttgat tctcaatctc acccaacgcc ttgaaaaccc cttgacatgt
     6181 cgccgtagtc atgagcgccg aagaggatgt tggagacgac gacctacatc agcgccttca
     6241 tgcgatggag acaaaactac gtcgtctcaa gcagagtcgt aatggacata gtgacaatgc
     6301 tcgttcctat gctgctcaac ggaatgcaat tcaagcacaa aggaaggagt tgcaagccga
     6361 tattgacgaa cgcctttctg agcagaagaa ggtccgtgat aagggaaaca tccagcgcac
     6421 aaggcgtgac ggtattcaag aacaaattcg cattctaatt gatcggtcaa aagccggtcg
     6481 aaatcatcac aacaaggcga agtcaaaagt cgtccaactt gccgagacag tgggcgatat
     6541 tgagcgtatt agccatagga ttgagacgga tggaacactc agtcttgaag ctgaaaacaa
     6601 gatggtaaag aaactcaagg ttcttgaggc gaagaggcag gaacttcttc cggatgtcga
     6661 ggaggatgcg cgcattactg ttgacctcga agatattgaa ggttcaatcc agacattgcg
     6721 tgcggaagca gatgctgctc accaggcatt tgtagatgca atgaacactg cagatgagat
     6781 gtgggaggcc ctaaaggaac gttttgagga acgcgatcag ctttctgctg aagcggatcg
     6841 tcatcatcag gcaatgcttg aggagcgtaa gaaggctgac gagttccatg agcagttatc
     6901 tgcattactt gacgaggtca atgagattcg tgatgaattg aatcagcaac gccttgaggc
     6961 ggagaagtgg gttacagatc acaacgagtc agttcgaaaa gcacgtaaga ctccggataa
     7021 agacaaggac cttgccgaat cactcactga tatgttgctt tctggcggca gtgtcacttt
     7081 gggtggcact cgtcctgatg aggggcaatc cctctctaat cgtggaaaga agcgacgtag
     7141 gcgttcagca ggcggcggcc ggcgaactgg taactaattt tccatactcc ttattttgag
     7201 gtggatgatg gttgtctcag gatgtcctgt tatgcgtatg ctacaaatag ggtgatggag
     7261 gggcgtttct tcaatggcag ccgatcatgc ggagcggagt tacgaccgtt cttgggacga
     7321 gattgaggat atgctcgatt tggcgaatga gcgtgcaatt gagtggagat cttggttcga
     7381 ggaatgcaag aataatggcg accgtgaagg tatgaaggag gccgcacgga attacaaagc
     7441 gctggaaggc gtcgttaaga cgcttaagtg ggtactcggt gagaggggtg tagatcatcc
     7501 cttggactga ttaccagcca cgcttctcca tatgtacatc caatgtctca atctctagac
     7561 ctggcatcgc ttcgccaatc atctggcaag cttcagccac cttccctgcg tctgcatggt
     7621 ggtgtgctgc tagcactatg gcctctgcag tacgttcagg atctgaggac ttgaagattc
     7681 cagatcctac gaagatcccg tccatgccat ggcgcatcat cagtgccgca tcggcgggag
     7741 tcgcaatccc tcctgcggag aaggtcacga caggtaagcg ctgattctga gcaatcaact
     7801 ccagcacatg atcaacttcc gccttgactt catcaaaggt tccaaagggt gtatttccaa
     7861 gagttaagtc atgcataa
//
LOCUS       DUKB01000138            3623 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_103908, whole genome shotgun sequence.
ACCESSION   DUKB01000138 DUKB01000000
VERSION     DUKB01000138.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_103908"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>305
                     /locus_tag="HA345_04630"
     CDS             <1..>305
                     /locus_tag="HA345_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011587014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HIH84676.1"
                     /translation="WVGEGRFGEWLRNVKDWAISRERYWGTPLPVWRSNSGQMKCIGS
                     IAELQQEVEKARAAGIENPDCPSDVDLHRPIVDSFVLLGDDGEPMHREPFVMDCWFDS
                     "
     assembly_gap    306..615
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <616..2242
                     /locus_tag="HA345_04635"
     CDS             <616..2242
                     /locus_tag="HA345_04635"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012361.1,HMM:NF019869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HIH84677.1"
                     /translation="CWFDSGCASFAQWHHPFDNPETFENNFPIDYICEGVDQTRGWFY
                     TLLAVSTTVFDSICYKRCLSLGLILDAEGKKMSKSRGNIVDPWDHFNREGADATRWYM
                     VTAGAPWNPLKFDPNGVRETYAKMFLTLWNCYRFYADYAEDDGFNPDNSETYIPVEER
                     SPLDRWILSRLSQVAYAYHRQFEDWDFHKACRDLEEFVVNDLSNWYIRRSRRRLWEDT
                     KSSDALACEHTLHEILTIVARLMAPVAPFISDEIHRNLTGGASVHLADWPIRSEGPLE
                     GEDELPPIDMVLEAKMELVRSLAETGRRIRIDANRRQRLPCQASWIVGGPEISEFHDI
                     LAEELNVEFLATEEDLDRFQRIELAPNRKALGRKCRQDLPVVLDELSKVDPESFLLEI
                     EAGLGALAGYEITAEDVEIRRVEKEGFAASTIQFDGPDGEMDVSLVMDMALTDALQSK
                     GLARDIIRRIQSKRKELDLEVNATIALEVWLPSNAPGMSEEDQSHVASEVRASSAVFH
                     RVDPDAVASEAGTGADVFSLDGEFEISYLVSAL"
     gene            2279..>3623
                     /locus_tag="HA345_04640"
     CDS             2279..>3623
                     /locus_tag="HA345_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HIH84678.1"
                     /translation="MMLTLQDIPGVGSSLANRLSQTLGSEGAVIEALDRGDIASLTAV
                     EGLSANRAIRLIKAVRGSDPDICRSGEGEILHRRVLESISEEASNSASRERIQLLGPY
                     PRTERGQIDANRVRVEEAMDFILKHPSKSEQWRSLTAGLTRIQRGNGRLDRVVVVPSQ
                     EVANSVEGLESRCRVIVRDAKETWKDYVVFNTVTWIGDGGPRDPPSGWVVLPSIIKLD
                     QAVPEISIEWFHENRSSIESIVSISSLDWGIHPLSESILTLVEPLNGLNELIDALGSE
                     GGDLTSLESVKDSLWTEIKTIEGAVNDAIIASTSDAHLSLDGEEVLSFYADTDGLNRR
                     IQAAVATGIEQAVQDGRNRLDAYLDGTSIRIPHDWVDSDYPFIVHRRAIEDIESALDA
                     AIITAKGDDLVRNSREASRLFGGCRLAILGLTEMEMWMAVARWAISHRCVMPEIVS"
BASE COUNT          794 a          732 c          896 g          891 t
ORIGIN      
        1 tgggtcggag agggtcgttt cggagaatgg cttcgcaatg taaaggactg ggccatcagc
       61 cgtgagcgtt attggggtac tcctctgcca gtatggcgct cgaattcggg tcagatgaag
      121 tgcattggtt cgattgctga gttacaacag gaggtcgaga aggcacgggc agcgggtatc
      181 gagaatccgg attgtcctag cgatgttgat ctccatcgcc cgattgttga cagcttcgtt
      241 ctgctcggcg atgatggaga gccaatgcat cgcgaaccct tcgttatgga ctgctggttt
      301 gattcnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnctgct ggtttgattc aggatgtgct tctttcgctc agtggcatca
      661 ccccttcgat aacccagaga cattcgagaa taacttcccc attgactaca tttgtgaagg
      721 ggtggaccag actagagggt ggttttacac ccttctcgca gtttccacca cagtattcga
      781 ttccatctgc tacaagcggt gtctcagtct tggcctcata ctcgatgctg aggggaagaa
      841 aatgtcgaag tcacgtggaa acattgtgga tccatgggac catttcaaca gggaaggtgc
      901 cgatgcgacc cgttggtaca tggtcaccgc tggtgcacca tggaatccac tgaagtttga
      961 tccaaatggt gtgcgtgaga catatgcgaa gatgtttctg actttatgga attgttaccg
     1021 attctatgct gactacgcag aggacgatgg cttcaaccct gacaactccg agacatacat
     1081 ccccgttgaa gagagatcac cattggatcg ttggatactg agtcgtcttt cgcaggttgc
     1141 ctatgcttac catcgtcagt ttgaggattg ggatttccac aaagcatgcc gtgaccttga
     1201 ggagtttgtt gtaaatgacc tttcaaattg gtacatccga cgttcacgtc gccgtctctg
     1261 ggaggataca aaatcgtctg acgcacttgc ttgcgaacac acgctacatg agattctgac
     1321 tattgttgct cgtttgatgg caccagtggc tccattcatt tctgacgaga ttcatcgcaa
     1381 tctaactggc ggggcttcag tacaccttgc ggattggcca attcgtagtg aggggccact
     1441 tgagggcgag gatgaattac caccaattga catggtcctc gaagctaaga tggaacttgt
     1501 tcgctcttta gcagagaccg gccgacgaat ccggattgat gccaatcgcc gccagcgcct
     1561 gccctgtcag gctagttgga ttgttggcgg tccagaaatt agtgagtttc acgacatcct
     1621 cgctgaggaa ttgaacgttg aatttttggc cacagaagaa gatttagatc gattccagcg
     1681 tatcgaactt gcacctaatc gtaaggctct aggccgcaaa tgccggcagg atttaccagt
     1741 ggttctcgat gaactcagca aggtagatcc agaatcgttt ttgcttgaga ttgaagccgg
     1801 tctaggggct ctcgctggat atgaaattac tgcggaggat gtagaaattc ggcgtgttga
     1861 gaaggagggt ttcgccgcct caacgattca attcgatggg ccagatggcg agatggatgt
     1921 cagtctagta atggacatgg ctcttacgga cgcattacag tcaaaggggc tagctagaga
     1981 tatcatcagg cgtattcaat cgaagagaaa agagctggat ctagaggtca acgcaactat
     2041 cgcactggag gtatggttac cgtctaatgc tccgggtatg tctgaagagg atcagtctca
     2101 cgttgcctct gaagtgcgtg cttcttccgc ggtgtttcat cgtgttgatc ctgatgccgt
     2161 tgcatcggag gcaggtacag gtgcggatgt attctccctt gatggcgagt ttgagatttc
     2221 ttacttagta tcggcattgt gaccgatgtt ctcaataact cccgcacgtc gatgtttgat
     2281 gatgcttacg cttcaggaca tccccggtgt tggttcctca ttagccaatc gtttgagtca
     2341 aacccttggt tccgaggggg ccgtaatcga agcattggac cgaggagata tcgcgagttt
     2401 gactgctgtc gaaggactat cagcgaatcg tgcgatacgc ctaatcaaag cagtccgtgg
     2461 ttctgatcct gacatctgtc gttcaggaga aggtgagatt ctccatcgta gagtactcga
     2521 atcaatttct gaggaggcat cgaattctgc ttcaagagaa cgaatccaac tcttaggacc
     2581 atatcctcgt acagagaggg gacagattga cgctaaccgt gttcgagtcg aggaggcaat
     2641 ggatttcatc ctgaaacatc ctagtaaatc ggagcagtgg cggtcattga ctgcaggttt
     2701 gactcgaatt cagcgaggga acggacgctt ggaccgagta gttgtagttc caagccaaga
     2761 ggtagcgaat agcgtcgaag gtttggaatc cagatgccgt gttatcgtta gggatgccaa
     2821 ggagacttgg aaggactatg ttgtgttcaa tactgtgact tggattggag atggtgggcc
     2881 acgcgaccca ccatcaggtt gggtcgttct gccgtcgatt atcaaactcg atcaagccgt
     2941 tccagagatt agcatcgaat ggtttcatga gaatcgttct tcgatcgaat ctattgtttc
     3001 gatatcttcg ttagattggg ggatacatcc tctttccgaa tccatcctca cattagttga
     3061 acctctgaat gggctgaatg aactcattga tgctcttggc tcggaaggtg gagatctaac
     3121 ctctcttgaa tcagtcaagg atagcctttg gactgaaatc aagacaatcg aaggagcagt
     3181 caatgatgcg attatcgctt caacctccga tgctcatctt tccctcgatg gtgaggaagt
     3241 gttgagtttc tatgccgata cagacggatt aaatcgacgt atacaagcag cagtcgctac
     3301 aggaatcgag caggctgtac aagatggtcg aaatagatta gatgcttatc tcgatggcac
     3361 ctcgattaga atccctcatg attgggttga ttcagattac cccttcattg tccaccgccg
     3421 agctatagaa gatatcgaat ctgcattgga tgcagcaatc attactgcga aaggagatga
     3481 cctagttcga aattcacgcg aagcatcccg ccttttcgga gggtgtcgcc tagcaattct
     3541 cggtttgact gagatggaga tgtggatggc tgttgctcgt tgggcgatat ctcatcgatg
     3601 tgttatgcct gagattgtat cag
//
LOCUS       DUKB01000139            3257 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_117846, whole genome shotgun sequence.
ACCESSION   DUKB01000139 DUKB01000000
VERSION     DUKB01000139.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3257)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3257)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_117846"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="HA345_04645"
     CDS             complement(<1..548)
                     /locus_tag="HA345_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HIH84679.1"
                     /translation="MSIAYISAEIGLESDLHTYSGGLGVLAGDHIKSAADAGVDLVAV
                     TLLYRQGYGIQHLDERGIQTESYRDIDPSHHLEDTGIEISLPLDGAQLYSRLWKMSVN
                     GINGSTVDVIFLDTRHENNPETFANLGERLYGGDDSIRIRQEYLLGVGGIHALDALSV
                     DIEGLHLNEGHCTFAALEMLNRG"
     gene            672..>2166
                     /locus_tag="HA345_04650"
     CDS             672..>2166
                     /locus_tag="HA345_04650"
                     /inference="COORDINATES: protein motif:HMM:NF015052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84680.1"
                     /translation="MGRSRRVGTSLLIVFLFIGPGLLGIVSAVTPDDIVIDGDLSDWS
                     TDTTMGTDANGVATYLTWNQTHLSFGWDGTDLSSADEGADIFVYLNTSEGGSPLSSEW
                     GFSHVLPFAADHAFVLEDSTYHAIFTHQSSGWDTSHEENDAMDVHTFPGDRYIGWSGN
                     MVTEISVPWSAIGDPTQVDFVVWAQWQDAGHVWTSFPAQNPASSNGAETFTHMYHLPD
                     RNASISPNQMEIRAANVVDKEEDALNVAIVFHQHQPYYKNKLTGMFELPWVRVHAMTE
                     YVDSPGILAQYPGTQVTYNLVPSFLEQLVDYHRNETPDVHTDFARRDWPTNPDGTVAG
                     YPNATDLELHTMQFQSFWNSGWIYNVSAEDPNAWVMPASVRYKEIYDETLHNLKPATI
                     MDDDLLPAQDLLDLQVLWYLFQFSPDYVQGEYTPFFDNPSTYSAPSQTDQGLMDLFTK
                     GRDYTPADLTYVIDQQHAHMANVLPMYSQLAAAGQVELTTSPYYHPIM"
     assembly_gap    2167..2473
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2474..>3257
                     /locus_tag="HA345_04655"
     CDS             <2474..>3257
                     /locus_tag="HA345_04655"
                     /inference="COORDINATES: protein motif:HMM:NF015052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84681.1"
                     /translation="PYYHPIMPLLMMDGWTFEDGIRVNKDAWPDDVRAHLTNGMNLFE
                     AELGFRPTGMWPSEEAVSPPMVQPVTDVGIQWMVTDEEILAKSTISGGGSIDVDDAAQ
                     LATPWMVEGDSGGEIAVIFRDRVISDRVAFQYGSMTPEAAVSDFLSYLDGIRSDLLAA
                     GEDPSEHLLTVAMDGENWMFMSEFQHTDNARPFIHEWYSRLESHPTVVTTTPSAFLEK
                     NLTLPQIETIGTGSWIDGTLSTWAGEADESLAWQRLVEARTAL"
BASE COUNT          696 a          768 c          727 g          759 t
ORIGIN      
        1 cctctgttca acatctctaa agctgcgaat gtacaatgcc cctcatttag atgcaaaccc
       61 tcgatatcta cagaaagagc atctagggca tggattcctc ctacgcctag gaggtattcc
      121 tgtcgaatcc gtatcgagtc atctcctcca tagagacgtt ctccgagatt ggcgaacgtt
      181 tctggattat tctcatgcct cgtatcgagg aaaatgacat ccacagtcga gccgttgatt
      241 ccattcacag acatcttcca gagtcgcgag tagagttgag caccatcgag agggagcgag
      301 atttctatgc ctgtatcctc cagatgatgc gatgggtcga tatcccggta ggattctgtt
      361 tgaattcctc tctcatcgag gtgttgtatt ccataccctt ggcgatagag aagtgtgact
      421 gcgacaagat caactcctgc atctgcagcg gatttgatat ggtctcccgc aagcacgccg
      481 agccctccag agtaggtatg taaatcggat tctagtccga tttccgcaga tatgtaggcg
      541 atggacatgg cggtttcaca tcctactagg agtaacccaa tccgcttcct gagggatata
      601 attcatccta cagtccaata tggccgaaat tgaggtgaaa accatatcat tgtgacagga
      661 aacggggacc catgggtcgc agtaggaggg tcgggacatc tcttctgatt gtcttcctgt
      721 ttatcgggcc aggtctgcta gggattgtct cagcggtgac gccagatgac atcgtaatcg
      781 atggtgatct cagcgattgg tctaccgata caacgatggg tacggatgcc aatggtgtcg
      841 cgacctatct tacctggaat cagacgcacc tctccttcgg ttgggatggc actgacctat
      901 cctccgctga tgaaggtgcg gatattttcg tctatctaaa taccagcgaa gggggctccc
      961 ccctctcctc ggaatggggt ttctctcacg ttcttccgtt cgctgcagat catgccttcg
     1021 tcttagagga ctccacctat catgccatct tcactcacca atcgagtggc tgggatactt
     1081 ctcacgagga gaacgacgcg atggacgttc acaccttccc tggcgaccgt tacatcggtt
     1141 ggtccggcaa catggtgact gagatttcag tcccttggtc ggctatcggt gacccgactc
     1201 aggtggactt tgtcgtctgg gcgcaatggc aggatgccgg ccatgtgtgg acttcatttc
     1261 ctgctcagaa tccagcatca tccaatggtg cagagacatt cactcacatg tatcatctcc
     1321 ctgacagaaa cgcgagtata tctcctaacc agatggagat tagggcagcg aatgttgtcg
     1381 ataaggagga ggatgctctc aatgttgcaa tcgttttcca tcagcatcaa ccatactaca
     1441 agaataaact cacaggtatg ttcgaacttc cctgggtccg tgtccatgca atgacggagt
     1501 acgttgactc tccaggcatc cttgcccagt atcctggtac gcaggtaact tacaacctcg
     1561 taccttcctt ccttgagcaa ctcgttgatt atcaccggaa cgagacacca gatgtccata
     1621 cggacttcgc cagacgagat tggccaacga atccagacgg tacagtcgca gggtacccga
     1681 atgcaaccga tctggaacta catacgatgc agttccagtc cttctggaat agtggttgga
     1741 tctacaatgt cagtgccgag gatcccaacg cttgggttat gcctgcgagt gttcgctaca
     1801 aggaaattta cgatgaaact ctccacaatc tgaagcctgc gaccattatg gatgacgatc
     1861 tccttcctgc ccaagatctc ctcgatctcc aggtactctg gtacctcttc cagttctctc
     1921 ccgactatgt gcagggcgag tatactcctt ttttcgataa tccttcgacc tacagtgccc
     1981 cttcgcagac ggaccaagga ctgatggatc tcttcaccaa gggtcgtgat tatactcctg
     2041 ccgacctcac ctacgtaatc gaccagcagc acgcacacat ggcgaacgtt ttgccgatgt
     2101 acagtcaact tgcggcagca ggtcaagttg aactgacaac atcgccatac tatcacccaa
     2161 tcatgcnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2461 nnnnnnnnnn nnngccatac tatcacccaa tcatgccact cctgatgatg gatggctgga
     2521 ccttcgaaga tggcatccgt gtcaacaagg atgcatggcc cgacgatgtt cgggcccacc
     2581 ttacaaatgg aatgaatcta ttcgaagctg agcttggctt caggcccaca ggtatgtggc
     2641 cttcagagga agcagtttca cctccaatgg ttcagcctgt gactgatgtg ggaattcaat
     2701 ggatggttac agatgaggaa attctcgcca aatctacgat atcgggtgga gggtctatcg
     2761 atgtcgatga tgctgcacaa ctggcaacac catggatggt agagggcgat tcaggtggcg
     2821 agatagccgt aattttccgt gaccgtgtca tctctgatcg agttgcgttc cagtatggtt
     2881 cgatgacacc ggaggccgca gtttcggact tcctgtccta cctcgatggt attcgttcag
     2941 atcttctagc tgctggagag gatcccagtg agcatcttct cactgttgcg atggatggtg
     3001 agaattggat gttcatgtct gagttccagc ataccgacaa tgcccgtcca ttcatacatg
     3061 aatggtattc acgtctagaa tctcatccaa ctgtggtgac tacgactccc tcggctttcc
     3121 ttgagaagaa tctcacatta cctcaaattg agacgattgg gaccggttcg tggattgatg
     3181 gtacattgag cacttgggcc ggtgaggcag atgagagcct tgcatggcag cgcctagttg
     3241 aagcaaggac tgccttg
//
LOCUS       DUKB01000140            9328 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_25754, whole genome shotgun sequence.
ACCESSION   DUKB01000140 DUKB01000000
VERSION     DUKB01000140.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9328)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9328)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9328
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_25754"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2245)
                     /locus_tag="HA345_04660"
     CDS             complement(<1..2245)
                     /locus_tag="HA345_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84682.1"
                     /translation="MVNVNQGSRPAICLLVAFTLFSSVMMGILVEKNAPLDGLEEVNY
                     SGPSGAGSTNATILNTTYLSGNHAYDNLQVGCATTGSSCGSIVANGSLILTVNTLTVS
                     SGASIISNAYSNATQGLGTSIQLSTSWMGSGAGGAGHYSNGGSGGGTTSSNGGASYGV
                     SNESGSNGGSIYDSNGNLISDGGIGGGHIVIYADSIEIYGTVSASGADADPGYRYNNG
                     SGTGGPGAGGGSGGSVVMRSNLIEIYGSILAQGGDGGDGEDGDCLPGSACLFMYDGGD
                     GGGGGSGGNLDIRANSTSNLLMTGNAILSASAGSGGSAGAPYGTGAAGDVGSNGGTGN
                     STTGTWSGWSGGSGGGGGGPASSSTPDSYEPNDSQSTGTWGNATVNAATGSNSTSWSG
                     LTIHSTTDTDWFCFWINQTAQFWFNITFIDANGDIDLRLFDSTGSQLSSSAGISNSES
                     VTQLVSTSAFYCAEVYGYSGAINYYNATLEVESVIPIVQNDAGSGQDAGQTIASALPI
                     SGPNNVTYGGYLDEIADTDDYYSIYVPFNSTISATMTHAAGLDFDLRLYDPSGILIST
                     ASTGSVPENVTSIGQTTLPGGNYSLQVDVWPTTFVTNTGNYSFSYWISGITSVPAAPG
                     NISADLFSNLTYGELELSNLSTNSSYTYYLEIAALEYHSSNNSYTTLASNSSILNVTQ
                     SDFTIPVNISVNTIHFSFPERAGTWCLYGSLSQPSAGSTSSGFILINESYDCIEVNML
                     DFVVLNET"
     gene            2391..6365
                     /locus_tag="HA345_04665"
     CDS             2391..6365
                     /locus_tag="HA345_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84683.1"
                     /translation="MRNALLIALLLIAAPLQLIQQEDVLETEVEDNLVINRSSSTRSY
                     ISTVLESNHYHTSVNTLFFEKINETGVIPNPGESKLFAAGWTCAMSANPPSACSLYDS
                     TGTNISIPTGVTCGSPLFAGSFASNGSFNGIIGGSCYGDRIDAMIQLSNGDMLYGGSF
                     CWVGSAAQGCNLSNSGVQLDPIANDDAFILRVDSNGTWKWGQVLGGMNSWDLVTDLAE
                     APNGDIYAMISYCNQNNGAECEIESELSYSNTTAGDQDLLLVKISSSGDMQWARNMGS
                     PDEDAGIANNWYPLRERGLYATPDGGVIVGSSGCENQGQGCSFEFNDDDYFVGHKSFI
                     VKYDADGDIEWFEEINAAFLQSMSSVDEHTLLVAGNHFTPVLTLGSVSIAHANSGTHA
                     DAWWATYNHTSRTWETLQGSNETADVYLHSSAIGPKGEIILGGSACWAVTPCDIDIGG
                     MNATNLGYGTGFVIKLNHSSDDAWLMTIEDTTTNPTAINQIDVSKWGDIGFSGRICVN
                     GGNTCTVSIDGYAYSPQGDNGTLVVRVQQDVDYDGIYHARDDCPNGVTGWISNMTTDA
                     DGDGCRDIDEDLDDDGDGVPDLNDGCPLVTGNSSSDREGCLDSDGDGWSDPDSGWNTG
                     DGADAYPNNATQWRDSDGDGYGDNHYYDIDPTTGLYVNQTGDGAPLDPEQWSDMDGDE
                     YGDNDQSGSRYDDCPYTYGLSSENDRLGCVDNDGDGWANEDDEYPFEVTQWSDQDGDG
                     YGDNPTGVSPDACPTSYGTSTIVGNLGCPDIDGDGWPDSTDAFPNEASQWNDTDGDGF
                     GDELSGVDGDDCVNTPGNSTMGLLGCIDADGDGWADSEDDLPENPSQWQDFDSDGYGD
                     NQNGTNPDGCPGVTGTSYIDTYGCADYDSDGWSGLTDAFPFEPTQWSDQDGDEYGDNA
                     SGNYSDNCPNVANPATVDTTGNGVPDAQADYDQDGKGDACDDDDDGDGALDTSDMCPS
                     GITEWTSTSVTDFDQDGCLDNTEDDDDDNDGVPDNADLCQKSNELFNSSSLNDHDADG
                     CLDTNEEDSDDDNDGVIDSKDLCPKGESNWVSTLSADWDGDGCKDDVEDSDDDNDGLD
                     DDLDSCPTGLSQWEDQRAELDLDMDGCLDDRESPLQQGSGVVDEQYYLDLIANQTQVE
                     ERTFVEQLAAGDLDAIGLVFTILFALVSISGTLLIRARKTAFLRGLERSIMTSVDLDD
                     LDQAKKDIRRAAKNDQISTNRYELMMDDLNDRRETLLQEKNSAQKNRSKGPPKKSPPK
                     RAPPKAKAEPVLEPEPEPVQAEEEYFTPPEDQITTGDDGYRYWEDQDGQWWIEMDGEW
                     TQWG"
     gene            complement(6366..6503)
                     /locus_tag="HA345_04670"
     CDS             complement(6366..6503)
                     /locus_tag="HA345_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84684.1"
                     /translation="MISKYSTVSSNDLDTLPSNHSSNALLQATEWTMMIATWVNKGVF
                     R"
     gene            complement(6503..6775)
                     /locus_tag="HA345_04675"
     CDS             complement(6503..6775)
                     /locus_tag="HA345_04675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84685.1"
                     /translation="MSAVTHFPVYGKKHLLKYSTPMAGYVWKHNDGHPNVDSLSRILF
                     SDCWIPDDCLKRIWSASVLQSSEPEEYLSSHQVYPARDLNRMLSVN"
     gene            complement(6823..6898)
                     /locus_tag="HA345_04680"
     tRNA            complement(6823..6898)
                     /locus_tag="HA345_04680"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6863..6865),aa:Asn,seq:gtt)
     gene            complement(6957..7889)
                     /gene="guaA"
                     /locus_tag="HA345_04685"
     CDS             complement(6957..7889)
                     /gene="guaA"
                     /locus_tag="HA345_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014012730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase subunit GuaA"
                     /protein_id="HIH84686.1"
                     /translation="MLIDEAVETLTSQIDDTAIIACSGGIDSTVAAVLANRAVGSMLH
                     CVYVDTGFMRKGETEEVAEMLNDLGLNLKVVDASDRFFKHLEGVTDPEHKRKVIGEQF
                     IRVFEEEQVTIGAKYLVQGTIAPDWIESGGGNRETIKSHHNVGGLPEDIDLVVVEPLR
                     EFYKDEVRSIARILEIPSSERQPFPGPGLAVRVLGDLTRDRVATCREACHIVEEDLRA
                     AAAAGKCDIPWQYFAALLPVRSVGVHGDTRVHGETIVVRAVHSLDGMSAHYAPIPHDV
                     LAAISTKITNALKGSVNRVVYDITHKPPGTIEWE"
     gene            complement(7911..8396)
                     /gene="purE"
                     /locus_tag="HA345_04690"
     CDS             complement(7911..8396)
                     /gene="purE"
                     /locus_tag="HA345_04690"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015790791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HIH84687.1"
                     /translation="MDITIVLGSRSDMPVADKAAKILDTFDVKYQIRVASAHRSPKYL
                     EGIVDTAEEDGCHVYIGMAGVAAALPGVLASMTPKPVIGVPVGSKVPYDSLLSIVQMP
                     PGMPVATVGVDRGDNAALLALQIIAAFNPEIAAAVIEYREMRTNAVIADDQALQEERG
                     A"
     gene            complement(8428..9201)
                     /locus_tag="HA345_04695"
     CDS             complement(8428..9201)
                     /locus_tag="HA345_04695"
                     /inference="COORDINATES: protein motif:HMM:NF013097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit TatC"
                     /protein_id="HIH84688.1"
                     /translation="MMRVEEEPFLILRSIGARLRVRIGLIAGVAMVGLVIGYPVAGEG
                     LEWLLSSSFLPDDASIVVLHPMEVILLRLRIASYVGLALALLVFSIDLLRMGSGSELV
                     EDTLSDLNESIIPHVGSAILVVLCSLGLAGMGLLYSFEFVVPLLLQYLSADASSFGLS
                     TTWQLEAWAGFILSLIGASVLVFQTPMLVFSLLRSGTITRQGVTSRRREIWFATAVFS
                     MLVSPPDPLSLLLIALPVVLLMEATLLLDFVLRRPYSQR"
BASE COUNT         2743 a         2185 c         2175 g         2225 t
ORIGIN      
        1 cggtctcatt caagactaca aagtccaaca tatttacttc aatgcaatca tatgattcat
       61 tgattaggat gaaacctgaa gacgtagaac ctgcagaggg ttgtgaaagg ctgccataca
      121 aacaccatgt acctgctctt tctgggaaac taaaatggat ggtatttaca ctgatgttaa
      181 caggaattgt gaaatcgctt tgtgtaacat ttaggatgga tgaattagat gccagagtag
      241 tgtaagagtt gttcgaacta tgatactcta atgctgcaat ttccaagtaa tatgtatatg
      301 atgaattggt actgagatta ctcaattcta gttcaccata cgtcaaatta ctgaataaat
      361 ctgcagaaat gtttccaggt gctgcaggta cagaagtaat acctgaaatc caataactaa
      421 aggaataatt tcctgtgttt gtaacaaagg tagttggcca tacatcaact tgaagggaat
      481 aatttccacc aggtaaagtg gtttgcccta tactagtaac attctccgga acactgcccg
      541 tcgaagcggt agaaatcaag atcccactgg ggtcatacag acgtaaatca aaatccaaac
      601 ctgcggcatg agtcatggta gcactgattg ttgaattaaa tggaacatat atcgaataat
      661 aatcatcggt atccgctatc tcatcgagat atccaccata ggtgacatta ttgggtccgc
      721 taattggtaa tgcagatgca attgtctgac ctgcatcttg acctgaacct gcatcattct
      781 gaacaatcgg aattactgat tccacctcca atgtagcatt atagtaattt attgcaccgg
      841 aatacccgta aacttctgca caataaaatg ctgaagttga aaccaattga gttactgatt
      901 cagaattaga aataccggca gaagaagaaa gctgactacc agttgaatca aacaatctta
      961 gatctatgtc tccattagca tcaatgaatg tgatattaaa ccaaaattgt gctgtctgat
     1021 taatccaaaa acaaaaccaa tccgtatcag tagtgctatg gatagttaac cctgaccaag
     1081 acgtggaatt ggaaccagtc gcagcattta ctgttgcatt accccaagtt ccagtggatt
     1141 gactatcatt cggttcgtaa gaatcgggag ttgaagacga cgcgggaccg ccacctccac
     1201 cgccggatcc acctgaccag cctgaccatg tgcctgttgt tgagttccca gtgccaccat
     1261 tagatcctac atctcctgca gcaccagtgc catatggagc gcctgcacta ccgcctgaac
     1321 cagccgatgc agaaagaatt gcattcccag tcatcaagag attgctagta ctattggcac
     1381 ggatgtcgag atttccacct gaaccgccgc cgccgccgtc gcctccatca tacatgaaaa
     1441 gacaagcgct acctgggaga caatctccat cttcaccatc gccaccatcg ccgccttgag
     1501 ctaagatgct accataaatt tcaatcaaat tggacctcat tactacagat ccacctgacc
     1561 cgccgccagc accaggcccg cctgttcctg aaccgttatt gtaacgatat ccggggtctg
     1621 catcagcacc tgaagcgctg acggtcccat atatctcaat tgaatcagca taaataacaa
     1681 tgtggccacc accaattcca ccatcagaaa tcaaatttcc attactatcg taaattgaac
     1741 ctccattgga accagactca ttgctgacgc cgtaagatgc acctccatta gagctggtcg
     1801 taccacctcc tgatccgcca ttactgtagt gtcctgcacc tcctgcaccg ctgcccatcc
     1861 aactagttga aagttgaatt gaggtgccta aaccttgagt cgcattagag taagcattag
     1921 aaataattga tgcaccactt gaaactgtca gtgtatttac agttagaata agagaaccat
     1981 tagccacaat cgaaccacag gatgaaccag tggtagcaca tccaacctga agattatcgt
     2041 aggcatgatt cccactgaga taagtcgtgt tcagaatggt cgcatttgtt gatccagcgc
     2101 ccgatgggcc ggagtaattc acttcttcca atccatccaa aggagcattt ttttccacta
     2161 gtatacccat cattacagat gaaaaaagag taaatgcgac aaggaggcag attgcagggc
     2221 ggctgccctg attcacattg accatggggc tgagttaggg gctaagaata tgaaacacat
     2281 ggttcaagtc cacgattaat tagcttggaa atgacaaaat tacgtttgaa tggacctcca
     2341 atactagatg ttagccaatc gttcatgtag tcctacattg agtttgaaac atgaggaatg
     2401 cgctgctaat cgccttgctc ctcattgcgg cacctcttca attgattcaa caggaggatg
     2461 ttctagaaac tgaagttgag gataatctgg taataaatcg gtcatcttcg acccgttctt
     2521 acatctcaac agtgttggaa tccaatcatt accacacctc agtgaataca ttgttttttg
     2581 agaaaatcaa tgaaaccgga gtgattccga atcctggcga gagtaaatta tttgcagccg
     2641 gttggacttg tgctatgtct gccaaccctc catctgcgtg tagtttgtat gattcaacag
     2701 gaactaacat atcaatacca acaggagtta cgtgcgggtc gccgttattt gccggatcat
     2761 tcgcatcgaa tggtagtttc aacggaatca ttggagggtc atgttacggc gatcgaattg
     2821 atgcaatgat tcaactctcg aatggagaca tgctctacgg aggtagtttc tgttgggtag
     2881 gaagtgcggc ccaagggtgt aatctctcta attctggagt tcaactcgat ccgattgcaa
     2941 atgatgatgc attcattctg agagtcgaca gtaacgggac ttggaaatgg ggacaagtac
     3001 tcggagggat gaacagttgg gatttagtta cggacctagc agaagcacct aacggagaca
     3061 tctatgcgat gatatcctat tgtaaccaaa acaatggagc cgaatgtgaa atcgagtcag
     3121 aattaagtta ctcaaatact actgcaggag atcaggatct cctcttggtg aaaattagct
     3181 cctcgggaga catgcagtgg gcgcgcaaca tgggaagccc tgacgaagat gctggaattg
     3241 caaataattg gtatccttta cgcgaaaggg gattgtatgc tactcccgac ggtggagtta
     3301 tcgtaggttc atccggatgt gaaaatcaag gccaaggatg ctcattcgaa ttcaacgatg
     3361 atgattactt cgttggccac aaatctttca ttgtaaagta cgacgctgat ggagatatag
     3421 agtggtttga ggagattaat gcagccttcc tacagtccat gtccagtgtt gatgaacata
     3481 cattactagt cgcaggaaac catttcactc cagtgctaac attggggtcg gtatctattg
     3541 cccatgcaaa ttcagggaca cacgctgatg catggtgggc aacctacaac cacacttcga
     3601 ggacatggga aactttgcaa ggttcaaacg agactgcaga cgtctatctt cacagttctg
     3661 caatcggccc taagggtgaa atcatactag gcggcagtgc gtgctgggcc gtcactcctt
     3721 gtgacatcga cattggtggc atgaatgcaa ctaatctagg gtatgggact ggattcgtca
     3781 ttaaactgaa ccattctagc gatgatgcat ggctaatgac aattgaagat accactacca
     3841 atccaacagc aatcaaccaa attgatgtgt caaaatgggg agatatcgga ttctctggcc
     3901 gaatttgcgt gaatggagga aatacatgca ctgtgagtat agatggttat gcctacagcc
     3961 ctcaaggcga caatggtact ctcgttgtac gcgtacaaca agatgtagat tatgacggga
     4021 tataccacgc aagagacgac tgcccaaacg gtgtaactgg ctggattagc aacatgacta
     4081 cagatgccga tggagacggg tgcagagata ttgatgagga tttggatgat gatggagatg
     4141 gagttccaga tctgaatgat ggatgcccct tagtgaccgg gaactcatct tctgaccgtg
     4201 aagggtgcct cgactccgac ggggatggat ggtcagatcc agattcggga tggaatacag
     4261 gtgatggcgc agacgcatac ccgaataatg caactcaatg gagagattct gatggagatg
     4321 gatacggaga caatcattac tatgatatcg acccaaccac aggactttat gtcaatcaaa
     4381 ccggcgatgg agcccctcta gatccggaac aatggagcga catggatgga gacgagtatg
     4441 gcgataatga ccaatctggt tctcgatatg atgactgccc atatacttac ggcctatcat
     4501 cagagaatga tcgcttagga tgtgttgaca acgatggaga tggctgggct aacgaagatg
     4561 atgagtatcc atttgaagtg acacaatggt ccgaccaaga tggagacgga tacggcgata
     4621 atccaacggg agtatctcct gacgcttgcc ctacaagcta tggaacctca actatagtcg
     4681 gtaatcttgg atgcccggat attgatggcg atggatggcc tgattcaaca gatgcgtttc
     4741 cgaatgaagc atctcaatgg aatgacaccg atggcgatgg atttggcgat gaactcagcg
     4801 gcgttgacgg ggacgattgc gttaacactc cagggaactc aacaatggga ttgctcggat
     4861 gcattgatgc ggacggagat ggctgggctg attcagagga tgacctacca gagaacccat
     4921 cacaatggca ggattttgac agcgatggat atggagataa ccaaaacggt actaatcccg
     4981 atgggtgtcc aggagtaaca ggaacgtcat acatcgacac atacggatgt gccgattacg
     5041 acagcgatgg ctggtccggt ctaacagatg catttccttt cgaaccaacc caatggtccg
     5101 accaagatgg cgacgaatat ggagacaatg cctcaggtaa ttactcagac aactgtccaa
     5161 atgtcgccaa ccctgctact gtggatacaa ctggcaatgg tgtcccagat gcacaagcgg
     5221 attacgatca agacgggaaa ggagatgcct gtgatgatga cgatgacggg gatggcgccc
     5281 tagacacctc tgatatgtgc ccttcaggga ttacagaatg gactagcaca tctgttacag
     5341 atttcgatca agatggatgt ctcgataaca cagaggatga tgatgatgac aacgatggag
     5401 tccccgataa cgctgattta tgtcagaaaa gtaatgaatt attcaacagc agttctctta
     5461 atgatcatga tgctgatggc tgtcttgata cgaatgaaga agattcggac gatgataacg
     5521 atggagtaat agacagcaaa gatctttgcc ccaaaggtga atccaactgg gtttcaactt
     5581 tgagtgcaga ttgggatgga gacggctgca aggatgatgt tgaagactcc gatgatgata
     5641 atgatgggtt agatgacgat ttggactcgt gtccaacagg cctaagccaa tgggaagacc
     5701 aacgtgcaga actggatcta gatatggacg gatgtcttga tgatcgagaa tctcctctcc
     5761 aacaaggaag cggtgtggtg gatgaacagt actatctcga tctaattgcc aaccaaactc
     5821 aagtcgagga aagaacattt gtcgaacaac tcgcagcagg cgacctggac gcaatcggac
     5881 ttgtttttac aatcctattt gcacttgtga gtatatctgg aacactgtta attcgggcta
     5941 gaaaaaccgc tttcctcaga ggtttagaac ggagtatcat gacatctgtt gatttagatg
     6001 atcttgatca ggcaaagaag gatatccgcc gagcagctaa gaatgaccaa atttccacca
     6061 accgttacga actcatgatg gatgatctaa atgatcggcg tgagacactt ctccaagaga
     6121 aaaacagcgc tcagaaaaat aggtcaaagg gtccaccaaa gaagagtcct ccaaagcgag
     6181 cacctcccaa ggctaaagca gaacctgtgc tagaacctga gcctgaaccc gttcaggctg
     6241 aagaggaata cttcacacca ccagaagacc agattaccac aggtgatgat ggatatcgat
     6301 actgggagga tcaggatgga cagtggtgga ttgaaatgga cggagaatgg acccaatggg
     6361 gttaattagc gaaacacgcc tttgtttacc catgtagcaa tcatcattgt ccactcagta
     6421 gcctgtaaaa gggcattaga actatgatta ctcggtaaag tatccaaatc attggatgaa
     6481 actgttgaat atttagaaat catcaattca ccgataacat ccgattcaga tctctcgcgg
     6541 gatatacttg gtgtgaactg agatattctt caggctctga actctgaaga acactagcac
     6601 tccaaatacg cttgaggcaa tcatcaggaa tccagcagtc ggagaaaaga atccgactaa
     6661 gactatcgac attagggtgg ccatcattgt gcttccatac ataacctgcc atcggcgtac
     6721 tatactttag gaggtgtttt ttcccataca ctggaaaatg tgttactgcg gacatattac
     6781 actttcacga tttggaaatc gtgttgtcgc cggattagaa attggcgccg agagagggat
     6841 tcgaacccac gacctgcgga ttaacagtcc gccgctccac caactaagct atctcggcag
     6901 tatgccgccc accgcccttc cattcatgaa tgaatcgggt caattagaag gttgagttac
     6961 tcccactcaa ttgtaccagg cggcttatgt gtgatatcat acaccacacg attgacgctt
     7021 cccttcaacg cattcgtaat cttcgtggag attgcagcga gcacatcatg aggaatcgga
     7081 gcataatgtg cagacatccc atcgagacta tgtactgcac ggaccacgat ggtctcacca
     7141 tggactcgtg tatcgccatg tacaccgaca cttcgaactg gaaggagtgc tgcgaagtat
     7201 tgccaaggga tatcgcactt acctgctgct gctgctgctc ggagatcttc ttcaacgata
     7261 tgacacgctt ccctacaggt ggcaactcga tcacgcgtca aatcaccgag tacgcggact
     7321 gccaatcccg gccctggaaa tggctgcctc tctgaagaag gaatctcaag aatccgcgca
     7381 atggaacgaa cctcatcctt gtagaactct cgaagaggct cgacaacaac gagatcgata
     7441 tcttctggaa gccctcctac attgtgatgc gacttgattg tctcacgatt gccaccaccc
     7501 gactcaatcc agtcaggtgc aatggtgcct tgaacgagat acttcgcacc aatcgtaacc
     7561 tgctcctcct caaaaacgcg gatgaactgc tcaccgatga ccttacgctt atgctccgga
     7621 tccgtaacgc cctcaagatg tttgaagaaa cgatcacttg catcgactac cttgaggttt
     7681 agaccaaggt cattgagcat ctctgcaact tcttcggtct cacccttacg catgaaacct
     7741 gtatcgacat agacgcaatg aagcatggac ccaacggcac gatttgccaa aacagcggcc
     7801 acagtactat cgataccacc gctacacgca ataattgctg tatcatcgat ttgtgacgtg
     7861 agtgtctcaa ccgcctcatc aatgagcatc tgcgtatcca ttccgaccac ctaagcaccg
     7921 cgctcttcct gaagagcctg atcgtcagca atcacggcgt ttgtcctcat ctcacgatac
     7981 tcgatgaccg ctgcagcgat ctcagggttg aaggccgcaa taatctgtag agcaagtaac
     8041 gcagcgttgt cgccgcgatc cacccccaca gtcgcaacag gcatcccagg aggcatctga
     8101 acaatgctca ggaggctatc atagggcacc ttgctgccaa cagggacacc gatgaccggt
     8161 ttaggagtca ttgaagcaag gacgccggga agcgctgcag caacacctgc catcccaatg
     8221 taaacatggc aaccatcttc ctcagcagta tcaacgatcc cttcgagata ctttggggaa
     8281 cgatgagcac tagcaacacg aatctgatac ttcacatcga atgtgtcaag aatcttagcg
     8341 gccttatctg caaccggcat atcagaccgg ctacccaata caatggtaat gtccatgcca
     8401 tgccgctatg cagtcggttc aaagcgttca ccgttgcgaa taaggtcgcc tgagaacaaa
     8461 atcaaggagc agggttgctt ccatcaaaag cactactgga agtgcgataa gcaataatga
     8521 gagaggatca ggggggctta ctagcataga gaataccgct gtcgcaaacc aaatctccct
     8581 acgtctcgaa gtgactcctt gacgcgtaat ggttcctgat ctcaacaggc taaacacgag
     8641 cataggggtt tggaatacta agacgctcgc accgataagg gacagaatga agcctgccca
     8701 agcctccagt tgccaagtcg tcgaaagacc aaacgaactt gcatctgcac taaggtactg
     8761 aagaagaaga gggactacga actcgaagga atatagaagc cccataccag ctagtccaag
     8821 agaacataga accactagga tagccgaacc aacatgaggg attattgact cattgagatc
     8881 agataaggta tcctcaacca attcagaacc acttcccatt cttagtaaat caatactgaa
     8941 tacgagtaac gctaaggcca aaccaacata gctcgcgata cgcaagcgaa gaaggataac
     9001 ttccatggga tggaggacca cgattgaggc atcatcaggg aggaaggaag atgagagtaa
     9061 ccactccaat ccttcccccg caaccgggta accaatcact aatcccacca tcgcgacacc
     9121 tgcgatgagg ccaattcgaa ctcgaagcct tgcaccgatg gaacgaagga tcagaaacgg
     9181 ttcttcctcg accctcatca tggatgcccc tcaacctgcg aggtgccttg tccactcatg
     9241 tgccttcgca tggaagacgc gttcaaaact tcggcatatc tggtaactgg atttcgtcat
     9301 tacgcagctt cggacgttcc gcaattgg
//
LOCUS       DUKB01000141            6211 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_290563, whole genome shotgun sequence.
ACCESSION   DUKB01000141 DUKB01000000
VERSION     DUKB01000141.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6211)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6211)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6211
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_290563"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(122..865)
                     /gene="rpiA"
                     /locus_tag="HA345_04700"
     CDS             complement(122..865)
                     /gene="rpiA"
                     /locus_tag="HA345_04700"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018933324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HIH84689.1"
                     /translation="MDVEQAKKEAGITAVQFVESGMYIGLGTGSTVKHTVIEIGRAIR
                     EDGLEVTGVPTSIETENLAIEHGIPLSNLTELGGLDLVIDGADEIDPTFNLIKGGGAA
                     LLREKIVAQASNRMIVVADDRKLVNQLGAFPLPIEITPFECEDTLRRISDICGVPASI
                     RAKMNPTWRERLESMDSDVGVPPHITDNGNMIVDAGAGVPFIKDPETIESQLLHLAGV
                     VEVGIFADMCDTVVLAGKTGVEILRLSDD"
     gene            979..6144
                     /locus_tag="HA345_04705"
     CDS             979..6144
                     /locus_tag="HA345_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84690.1"
                     /translation="MRPKVIVIAMIMVYAFSVASFAMSPSSVGLTDDSMQTSIGVPTK
                     VSVSAYPNGTSNALTLEIPENEAVTGLELRIQPDALHRNEIVTWSGTSDWNATGTDQD
                     RINVNQSGLQMLPKKWEWDFETGPSNSPQGWTLGNGWLRGYDTSIGQSAGVHGGTKAI
                     YTYNGNYPNNIPSNGYFATSPVIDCGGCSGNWRLKYWKKLGIESHYYDDAQVHVKNQQ
                     GTWQTVWDWNSYSVNPSSWTQMNHDISQYAAGNSNLQIRFKLGRTDGSVTYTGWNVDD
                     ISVEPSTGGGGADAANWTSPSFGPAITGSNGMTPGAYGQMSIDAMIPNNAILRTSILD
                     GRSNTPIPGFDNLEDLHLDLGPIDPHLHPELRVKLYFATPNGAQTPIVHGIHLNGRIA
                     TTFEVNPALMGWNLTGSNWDGDSINGGTATSPVYTSARAISQIALSTSGSGATAEYNI
                     DGGSWTPIATTSTTILSEMAETVQFRFSGSSMDLASFQADLIPGRTGDEMMIDIGTDG
                     ISEWDFGHTAVGSLGWQDLFANGQRSVSVNLGGQGGQLDVPILLPEDGIDSLSFVASP
                     GALPPPGFNWTLIADGTEVANGSPTLSTIGTNRIELTTSEVNDLNTAISGITVTSGPM
                     HLPHVEVTLRLESPAGSYRISALNARSTPTIDLTFGPGSPLVMAVNDVIPSSPLTGMT
                     RLVPVPFVFDLPAAVSVTIVDLESSSSFTTDVMSFMNITTTIAPSYQWMEVHTSHTVE
                     DGLPAEIQIDIDAIQHSASVTMDITQNTHTITQRGGFPDDLLILNPDTPYEHWINGSN
                     VDSIFRFMINASWDDEPDVRIKSRIVLDDGRRSVPKIQMIGIGSRNGIENDVMLRTWS
                     ILNDLDVAVPLSESYLKSDADIAILAELGFPNTDISLAPRTGDVTVHLHLNGVEIANT
                     SQIDEGIARFDIKTPMTTGDVEYEISVSSQHGAEITYALPTNRTFTVDSIQPEVVGMS
                     IARIDHLQQNPAQTLRFEIFDRPILPSNIALMLWREWEDDINGDGYPDEDEYKERPIQ
                     IPWNRTQANGNYTIVLDDRLAPDGALVYGYLIGADPAGNALTNNGAPGTEQTLFVYQL
                     KTDGAPLLSEEGNFETENLGYLHPGTDYTLSMPVFEPNGHADINTAEIQLASNSQTDL
                     MPIIWSTENGTCTSESANFDYLDCRMISENEEPLTPFTMNSILEVDFRLGWNIAVEDD
                     LRREPTLEVIDYAGQSAWRSYPELRWRFSPDLAIDSSSIHLNPYEGTSSLEGAWMRPN
                     GLMGLNGTVVFPSSGLSPSQGFTVSIIFDGSEVQIDTDDEGRWSTELNAPLESGDHPL
                     VFELIGLPAQSRDMTDPLATLLWVTVDGDDPRPNAIVSPRTNTVISIEELGNLTIELT
                     IDEQGEIDPDNMNMNWALVKRNDNSRTVAQGTTKLEVSSSSLAGKSIPTTSLIEVSGD
                     IPNSAFMEALELRVWVSGAARAGNQYTTTSAFNSAQSPFAIWGVEILGPEFAIMEDLV
                     YSKRSGVIIGESLTISADVRNIGELDGQVGIKFIAENIDGTQIEINQEPIQVDIREGE
                     RTTVPIDWSPNKDGRYVILVYLNGDLSATGEPVDVLQPVDEGLLSGDDLGFTLIIGLM
                     FILLAVILVGVVIIAVRNGGDGDDWDDYEEEAWDQTDEFEKEEAVQKDRELEEIAKAR
                     AETTPRPQPKERQQESSGADPRLEGMDRRTYDHWSQQGYSHEQIVEWWSQNNQ"
BASE COUNT         1724 a         1550 c         1433 g         1504 t
ORIGIN      
        1 gacggggttc gaacccgcga ccgacggatt aagagtccgt cgctctacct gactaagcta
       61 caggcccaac cttcggaccg agcactcctt cttgagcgct acgcctcaat taatggccta
      121 tttaatcgtc tgaaagtcga agaatttcaa cgccggtttt acctgcaagg accacagtgt
      181 cacacatatc agcaaatata ccaacctcta caacaccggc aagatgtagc aactgagatt
      241 caattgtttc tggatcttta atgaacggga cacctgctcc tgcatccaca atcatatttc
      301 cattatcggt aatatgtggg ggcacgccaa cgtccgaatc catcgattcg agccgctcac
      361 gccaggtagg attcattttt gctcgaatgc tggcgggcac cccacatata tcggagattc
      421 gccgtaacgt atcctcgcat tcaaacggtg taatctcaat tggtaatggg aaggcaccaa
      481 gttgattcac tagcttcctg tcatcggcaa caacaatcat ccgattggat gcttgggcaa
      541 caatcttctc tctgagtaaa gccgcccctc cccctttgat tagattgaaa gtcgggtcaa
      601 tttcgtctgc accatcgatt accaaatcta aaccaccaag ttccgtcaaa ttggatagag
      661 gtataccatg ttcgatagcc aaattctctg tttcgatact agttggtaca ccagtcactt
      721 cgagcccatc ttctcgaatt gcacgaccga tttcgattac agtgtgtttc accgtcgaac
      781 ctgtgcccaa accaatgtac ataccagatt caacaaactg aaccgcagta atacctgcct
      841 ccttcttcgc ctgttcgaca tccataatgc ttctaatcat ccgaggtcat tgtgcatttc
      901 ggaaatttct aactgaaaat taagggacat actgggaagg gattacatac atatcttctc
      961 actacgcgca cgagagacat gcgtcccaag gtgattgtca tcgcgatgat aatggtctat
     1021 gcattctctg tagcctcatt cgcgatgtcc ccctcgtcag tggggctcac tgacgactcg
     1081 atgcaaacct cgattggagt tccgacaaaa gtgtcagtat ccgcctatcc aaacgggacc
     1141 tcaaatgcac tgacgctaga gattcccgag aatgaagctg tgaccggtct agaactacgg
     1201 attcaacccg atgcattgca ccggaatgag attgttactt ggagcggtac atcggattgg
     1261 aacgcaacag gtactgatca agaccgcatt aacgtcaacc agagtggttt gcagatgctc
     1321 ccaaagaagt gggaatggga ttttgagacg gggccaagta attcccccca aggatggact
     1381 ctcggtaacg gttggctccg gggatacgat actagtatcg gccaatctgc gggtgtacat
     1441 ggaggaacca aagccatcta cacttacaat gggaactacc ctaacaatat cccttcgaat
     1501 ggttatttcg caacatctcc agtgattgat tgtggaggct gttctggaaa ctggcgattg
     1561 aaatactgga agaaactcgg tattgaatcc cactattacg atgatgcaca agttcacgtc
     1621 aaaaatcaac aaggtacttg gcaaactgtg tgggattgga attcttactc cgtaaatcca
     1681 tcttcatgga cccaaatgaa ccatgacatc tctcaatatg cagcaggaaa ctcaaatctc
     1741 caaatccgat tcaaacttgg acgaaccgat gggtcagtta cctataccgg ttggaatgtc
     1801 gatgatatat ccgttgaacc atctacaggg ggcggtggag ctgatgctgc aaattggact
     1861 agtccatcct ttggcccagc aattacaggc agtaatggca tgacacctgg agcctatggg
     1921 cagatgagta tcgatgcgat gatacccaac aacgcaattc tccgaaccag tatacttgat
     1981 gggagatcaa atacaccgat tcctggattc gataatcttg aggatttaca ccttgatctt
     2041 ggaccgattg atccgcattt gcaccctgaa ttgagagtta aactctactt cgcaaccccg
     2101 aatggtgctc agactccgat agttcacggt attcatctca atgggcgtat cgcgactacc
     2161 tttgaggtca atcctgcttt gatggggtgg aatctaaccg gatctaactg ggacggtgat
     2221 tccatcaatg gagggactgc aacgagtcca gtatacacct ctgctcgagc aatatcgcaa
     2281 atcgcactat caacctcagg tagcggcgcc accgcagagt acaacatcga tggaggatct
     2341 tggactccga tcgctacaac gagtacgacc atactcagtg aaatggctga aaccgttcag
     2401 ttcaggttct caggctcctc gatggatctt gcgtccttcc aagctgacct tatcccagga
     2461 cgtacagggg atgagatgat gattgatatt gggacagatg gaatctcaga atgggatttc
     2521 ggacatactg ctgtaggaag tctgggatgg caagatctct tcgcgaatgg acaacgcagt
     2581 gtgagtgtta atctcggtgg gcaaggagga caactcgatg tcccgatact tctaccagaa
     2641 gacggtattg attctctctc cttcgtagca tcaccaggag cacttcctcc gcctggattc
     2701 aattggacat tgattgcaga tggtacagag gttgcaaatg gttcacctac tctcagcaca
     2761 atcggcacga acaggataga actcactact tctgaagtca atgacctgaa taccgccata
     2821 tctggcatca cagtaacatc tggaccgatg catctcccac atgtcgaggt cacacttaga
     2881 ctcgagagtc ctgctggatc atatcgcatc tctgctctga atgcgcgtag cacacccaca
     2941 attgacctga ccttcggacc tggtagtccg ctcgtgatgg cagttaacga cgtcataccg
     3001 tcctctcccc ttactggaat gactcgcctc gtccctgtac cattcgtctt cgatctccct
     3061 gcagctgttt ctgttactat tgttgatttg gaatcaagtt cctcattcac cacggatgtg
     3121 atgtccttca tgaatataac aaccacaatt gcaccatcct accaatggat ggaagtgcat
     3181 acatctcaca ctgtcgagga tgggctaccc gcggagattc aaatcgacat cgatgcaatc
     3241 caacattcag cgagtgtgac aatggacatc acgcagaata ctcacacaat tacacaacgt
     3301 ggtggattcc ctgatgatct cctaatattg aatccagata ctccctacga gcattggatt
     3361 aatgggagca acgtggactc tatcttccga tttatgatta atgccagctg ggatgacgaa
     3421 cctgatgtac gcattaagtc aaggattgtc ctcgatgatg ggagaagaag cgttccaaaa
     3481 atccagatga ttggcatcgg atcacgaaat ggtatcgaga acgatgtcat gttgcggaca
     3541 tggtcaattc tcaacgactt agacgtggca gtcccactat ccgaatccta tctcaagtca
     3601 gatgcggata tcgcaatcct cgctgaactt ggattcccca atactgacat ttctctcgca
     3661 cctcggacag gtgatgtgac cgtacaccta cacctcaatg gtgtagagat tgcaaatacc
     3721 tcacaaatcg atgaagggat tgctcgtttc gatatcaaaa caccaatgac aacaggtgat
     3781 gtcgaatacg aaatctctgt cagttcacaa catggtgctg aaattaccta cgcactacca
     3841 acaaaccgta ccttcactgt ggattcaatc caacctgaag ttgttggaat gagtatcgca
     3901 cggattgatc acttacaaca aaatccggca caaactctac gcttcgagat ttttgatcga
     3961 cctatcctac cttccaatat tgccctgatg ttgtggagag aatgggaaga tgacatcaat
     4021 ggagacggat atccagatga ggatgagtac aaggaacgac ccatccaaat tccatggaat
     4081 cggacacaag ctaacggcaa ttacaccatc gtactcgatg accgtcttgc tccagatggg
     4141 gctcttgtct atggatatct cattggagca gatcctgcag gtaacgcact caccaacaat
     4201 ggagcccctg gaactgaaca gaccctgttt gtctatcaac tcaaaacaga tggagcacca
     4261 cttctgagcg aggaggggaa cttcgaaaca gaaaacctcg gttacctcca ccctggaacc
     4321 gactatactc tgagtatgcc tgtcttcgaa cctaacggtc atgctgacat caataccgca
     4381 gagattcaac tcgcatcaaa ctcacaaacc gacctaatgc caattatatg gagcacggaa
     4441 aatggaacct gcacaagcga atcggccaat ttcgattatc ttgattgccg tatgatttca
     4501 gagaacgaag aaccgctgac tccattcacg atgaactcca tccttgaagt cgatttccga
     4561 cttggatgga acatcgctgt cgaggatgac cttcgacgtg aaccaacctt ggaggtaatc
     4621 gattatgcag gacaatccgc atggaggagt tatcctgaac ttcgatggcg tttcagtcca
     4681 gatcttgcga ttgactctag ttccatccac ctgaacccgt atgagggcac ttcctcgttg
     4741 gaaggagcgt ggatgcgtcc aaacggacta atgggattga acggtactgt cgtcttccca
     4801 tcctctggct tatcaccctc ccaaggcttc acagtatcca tcatcttcga tggtagcgaa
     4861 gtccaaattg atacggatga cgagggtcgc tggtccactg aactcaacgc accgttggaa
     4921 tctggagatc accctcttgt cttcgaattg attggactgc cagcccagag tcgagacatg
     4981 acagatccgc tcgctaccct tctctgggta accgtagatg gtgatgatcc tcgtccaaat
     5041 gcgattgtat ctccaagaac aaacacagtc atcagtatcg aagaactagg gaacctcaca
     5101 atcgaactca cgatcgatga gcagggagag atagacccgg ataacatgaa catgaactgg
     5161 gcactagtaa agcgaaacga taactctcga actgttgctc aaggtactac gaaactagag
     5221 gtgtccagca gttcactcgc gggtaaatcc atccctacaa ccagtctaat cgaagtatca
     5281 ggcgacattc caaattcggc attcatggag gccttagaac tcagagtatg ggtatcagga
     5341 gcggctaggg caggcaacca gtacactaca acaagtgcct tcaacagcgc acaaagcccc
     5401 ttcgctatct ggggggtaga aattcttggc ccagaattcg ccattatgga ggaccttgta
     5461 tactcaaaac gatccggtgt aataatcggt gaatctctga ccatatctgc tgatgtacgc
     5521 aatatcggtg aactcgatgg gcaggttgga atcaaattca ttgctgagaa cattgatgga
     5581 acacagatcg agattaatca ggaacccatt caagtagata ttcgtgaagg agaacgtacg
     5641 actgtaccta tcgattggag tccaaacaag gatggccgct atgtcattct cgtctatctc
     5701 aatggagatt tgtcagcaac aggagagccc gttgatgtgc tccaaccagt agacgaaggg
     5761 ttactttcgg gagatgacct tggctttact ctaatcatcg gcctgatgtt cattctattg
     5821 gcagtgatcc ttgttggagt agtgattatt gccgtccgca acggtggaga tggagacgat
     5881 tgggacgact acgaagaaga ggcgtgggac caaacagatg aattcgaaaa agaggaagcg
     5941 gtgcagaaag atcgggagct tgaagagatt gcgaaggcgc gtgctgaaac tacaccacgc
     6001 ccacagccga aggagaggca gcaggaatcc tctggggcag atccacgact tgaaggcatg
     6061 gatcgccgga cctatgacca ctggtcccag caagggtaca gtcacgaaca gattgtcgaa
     6121 tggtggtctc aaaacaacca atgaaccaaa ccgttcgatt cataccatac ggttgatgct
     6181 cggagtatga gggagcagga gggtcgctga c
//
LOCUS       DUKB01000142           11000 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_48458, whole genome shotgun sequence.
ACCESSION   DUKB01000142 DUKB01000000
VERSION     DUKB01000142.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11000)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11000)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11000
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_48458"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1027
                     /locus_tag="HA345_04710"
     CDS             <1..1027
                     /locus_tag="HA345_04710"
                     /inference="COORDINATES: protein motif:HMM:NF020460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84691.1"
                     /translation="EDYPALSTAFAEHLHPLLPNGGRVLLWPEAHTRNNAYLENVFVL
                     RELLESKDITVFVGTDELLPVEIDVHGGILQFCQVDVEQDGVFVDGDPIDLILLNSDL
                     TAGPLLIDSVPIRPVPSMGWFNRSKCEHFEHVKTLVHQLAEMLGIDPWLIGPWGFVSR
                     GRCLEEIECRERLAAEIELGLDFISSKYKEHGIDGNPSLFMKNDRGTYGLGILRIDSP
                     EEILNLSKRKMNRLTYGRGGVQAEDFLLQEAVPTHLRSNGGVIEPVGYGVNGLVLSWF
                     HRLNLKHGPIDNLNTPSTSFIVDSELDEDSAQYLLNRRILHRTLAEISMIAMTLEVKD
                     HSGSDSD"
     gene            complement(1003..1293)
                     /locus_tag="HA345_04715"
     CDS             complement(1003..1293)
                     /locus_tag="HA345_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84692.1"
                     /translation="MAEEPEEPIRFGAEFGPYRSSRSSGVSLSTFKTLVWTSNVGGLI
                     LMVIGLELLIVTHAYTWAMLCFVAGVAIALFPSNYEIVGMEQDENQSESDPE"
     gene            1403..2638
                     /locus_tag="HA345_04720"
     CDS             1403..2638
                     /locus_tag="HA345_04720"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012744.1,HMM:NF024831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HIH84693.1"
                     /translation="MHIAMLSGEYPPRWGGMGSTVFHLSAALVARGHRVTVITRNGGG
                     GSPPGQDGVKVRIVNWAKIPMAFTRSYGKYALNDLVRLHSEDPVDVVHLHCPMISWNA
                     RQFKTCISKVAPVVSSLHGSWLGERDGLLTARRQREAAVWANPNDLAILLTAGYYARF
                     EKDAIHGSEVCVANSKATMEDFVMRYQPPDNWDCEVVHWGVDTEMFVPIDMDDVESTK
                     QRDSLRLKYGVDDSSNLILAVGRLAARKGYGSLLKAFAKVHSAKPDTTLVIVGRGHLR
                     KRLLRQAARLSLDSSVVIESGMPFDDLALLFRSANLVVYPSYYEGQGLIPLEAMSSGT
                     PVVTVHHGPLPEMVDNTVGSLFKMGDVDSMAESILAELTNPEELSLKGEAGRKRVLES
                     FTYAHDAERFESIYLRAMQ"
     gene            complement(2645..2977)
                     /locus_tag="HA345_04725"
     CDS             complement(2645..2977)
                     /locus_tag="HA345_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009204985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HIH84694.1"
                     /translation="MASRDEVASRRTDVQRRIRIALNAAKAEERASVKGGETTVAFVK
                     EEQCIGCDQCTIVCDDDAIELYDKPLASPLMKVDINRKAKILRDPCTGCRLCVFACPT
                     DAIIMIDR"
     gene            3060..3344
                     /locus_tag="HA345_04730"
     CDS             3060..3344
                     /locus_tag="HA345_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84695.1"
                     /translation="MEVSESNVSVEPERWQNDFLSIIMLILGPILWLLLVTQLRFSVG
                     WLAFVCQAQVGFYLWLTVLAYGHKRAAQWTWWGVGITAILSLWSLIVALI"
     gene            complement(3348..6173)
                     /locus_tag="HA345_04735"
     CDS             complement(3348..6173)
                     /locus_tag="HA345_04735"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014774.1,HMM:NF024634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HIH84696.1"
                     /translation="MGIIERLGRVADTYVSERDQLLEAEQERRRVFTGHAFWPQEVLR
                     DTIIAMSVLMVLCFYSWLIPPPLHNAADPFAQAGFVFPDWYVLFSYGYLRLGEYLPQF
                     DIPLPEAIGNFFGTPIISWNAGWWGAAITGIPVMILALPPFIPGREKRGVEDPWFATA
                     GMVYLAHVWFISVYSINIFLELYGKNRTDFCQMNSHAGISCGTRSPWIAEVFNSIPWL
                     LTGVFIFAVVYFGIRWFMVQTQGARITPNINRNVAFGSLLVAILLCTVTWPVYDNGFW
                     EMGGFGAMQDVEDLETLRSQPSDTLIDLRESEHAEHMLAMCLTYSSSSNSIAWDDDHF
                     ADGAWSYDDFCVMPAREFSNWGIYQPTQELVIDFNGANKHVDTDSGRNGLFSASEYSG
                     SNDGTSVMFTYSGTMNVPNLGVDTLQVDVGCNIRTTIRNVGEHTISLIVKDITGAVIT
                     EMDTCTTQTLKLASGADYMLDYSVETTGLNDTGNVITDVSIQAFQPLVLDANGRAVNL
                     SDSTALNLLTGSPMYSASSLSEHTLENPTYLKNPKSLDAKLTYSLVIPCLGVGALVFF
                     LMRSMARGYEYEMNKCYGCDLCDDACPVRLFNAGDKLNIIYNSWNNEDDGVPLYSCLT
                     CTACTNACPQLVDYDSYIDIRRNLIVGGPPAAEIPHTILQAVIRAEAEEDASEQFVAI
                     EDYPIDSTIGYYPGCVDYIDQEMIFSHVNEGTMNLGQTTDAAFTLFEDAGVDVAYLGR
                     DFLKCCGHDQKWQGMTEVFEKLKAYNQKKLGESGIETLVTSCAECFRTFAMDYELDDL
                     KVMHTTEYLIEAGYQFEASVPEGTTVTYHDPCRLGRQMNIYDEPRELVQRIEGVDLVE
                     MEHHGEDSLCCGVSSMMSCNENSRALRIERFEEVRDTGAEIMLTTCPKCVSHFECLKF
                     EGDPRHDFEILDVVSFLARQIEAKKQA"
     gene            complement(6188..7063)
                     /locus_tag="HA345_04740"
     CDS             complement(6188..7063)
                     /locus_tag="HA345_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006114351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HIH84697.1"
                     /translation="MIESVVLWLFLAIILVIVAFTLRKEREEVPRKEILRAVQTTTAG
                     GGGIGLLEKSFLWAFSWMDTRFRIQDYWAMSRDAYYSMHRQMPLTHAEKYKLRIIWYW
                     YPLYCLGGISFLAFIILVITGTILGIYYVPGGMGDPTPAYASMEFIMTQLPFGYIIRS
                     IHHWTTHFMVAAVFLHMCRVYFTGAYRNPRELNWLIGVALMFFTIFFGYSGYLLPWDA
                     LAFGAATIGINMANATPLIGPWVATAMFGGSTLTYQAVTRMYFIHVFILPVLVTTLII
                     VHLFIVWVQGVAEPH"
     gene            complement(7073..7930)
                     /locus_tag="HA345_04745"
     CDS             complement(7073..7930)
                     /locus_tag="HA345_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84698.1"
                     /translation="MSRKFKLRQAPGDANEVTAGGTRLIDRRDFIRHSFNSAAGVIAA
                     ASLGSIGFASLLMGVAESDGGDSAVRFWVPSGAEDTAWYGNMHLEPMTKSVFETQAAT
                     SSTGMAGAAGVWSGLPVTVIYVPHAENSGTAPVENKPRFQYGDGYDLSGAYIGYGGDM
                     EEDSTYADLAIHDNMVIVFSRCPHLCCIPGWQLVPNDFTADTWYPGGTDSGGNKLFCI
                     CHSSRYDPTMIEKNQNRNRTNGTMFEYFGVKLTGGPAPVGMPLIPFEVNGDIIEALPT
                     YLDWYTFCD"
     gene            complement(7941..8390)
                     /locus_tag="HA345_04750"
     CDS             complement(7941..8390)
                     /locus_tag="HA345_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84699.1"
                     /translation="MKDDALLTLLREVKSGVVSIEDARTALEGVSLTEEQYTSAVDHG
                     VFNKPKPGTVVRATISPSAESGLMVLFFVWGLFWTTYWAFTLSYGLLNDWDQQQLAFH
                     LGMVLMTLIMMGIIYLRFVLPDLVVVKHRRNKFIPPKDTNSWKRYES"
     gene            complement(8387..9253)
                     /locus_tag="HA345_04755"
     CDS             complement(8387..9253)
                     /locus_tag="HA345_04755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84700.1"
                     /translation="MSMSSPWTAPVRRALTLSLLMLILAFGPASVGAWPGGIGFDQDG
                     KGDVALAGCTCHNVDPSGSVTVILDGVPSVYIAGETYEMTIQIIGGAEYHSGGSEYSA
                     GFSMRVSQGILAAGEGSEDQVMASPQNFNGPASDDTQTLTHTDSGGNLESRSWNIVWT
                     APVTESGPATIWLVGNSVNGDGVPGPQDMWNRLSAVIIEGTDDSNRRTVFSGDGNIEP
                     PAPPSDGHTDLHHMGAKFRAHWLGLLGFLSVILVLVFCGLFLRYGFSRHYKGRSNLLR
                     LRIKHLRRGDQL"
     gene            9431..9736
                     /locus_tag="HA345_04760"
     CDS             9431..9736
                     /locus_tag="HA345_04760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84701.1"
                     /translation="MAGRAWKNTYRLSDAQLEHLDLAEERMEAMDLSEAERILLEMLD
                     ESPQCIPVLSNLGHLYGRHLSDFEKAVEYYQMVLDIEPDNAWARDERRRYQRYLTYD"
     gene            9746..10645
                     /locus_tag="HA345_04765"
     CDS             9746..10645
                     /locus_tag="HA345_04765"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012320.1,HMM:NF023746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84702.1"
                     /translation="MQDGALLLVGAGGLGCRWASYAHLDVEEDCDLLLVDSDPLSLDL
                     SESASTVCLGPEGSEGAILPELGHDWAKAHASVFADMFDRAELVLIAAGLGGGVGSGA
                     STWLAEQARSSGALVVTVVGLPFEDQVARMRWARLSRPRLEAASHATIGISLSALALR
                     AEKRGAEWESGGGWVPSLIRALVQTQARKGVINLDLMDLRTVLTQAGRSTVLVAQGDC
                     YDPQRLFQKAFDAPLERIDLVNAATCLLHIEGGDQVTLGDFDRIADAFTRGLSDNCHV
                     IYGASIVRELEGEVRVIAVLAGL"
     gene            complement(10640..>11000)
                     /locus_tag="HA345_04770"
     CDS             complement(10640..>11000)
                     /locus_tag="HA345_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84703.1"
                     /translation="STDLIGDLPLIGLLSKQFGIGSIASTLGIGHVLTASTLLLGLSK
                     ALQRPRWKNDTTVESTLKDDAESSDEEGIINEIDTVDVPEINRISEDDEEIKLVEIED
                     EIELIEDEDEVELIDAS"
BASE COUNT         2580 a         2623 c         2910 g         2887 t
ORIGIN      
        1 agaagactat cctgctctct ctactgcctt cgctgaacat ctccatccgc ttcttccgaa
       61 tggggggcgg gtcttgcttt ggcctgaggc gcatactcgg aacaatgcct atctagagaa
      121 cgtgtttgtt ctccgcgaac tccttgaatc aaaagacatc acagttttcg ttgggacaga
      181 cgaactcctg ccggtggaaa tcgatgtcca tggaggtatt ctccaatttt gtcaagtaga
      241 tgtcgagcag gatggtgttt tcgtagatgg agatccaatc gatctcatcc tccttaattc
      301 tgatttgacg gcgggtccac tactcattga tagtgtccca atacgcccag ttccttcgat
      361 gggctggttc aatcgaagca agtgtgaaca ttttgagcat gtcaaaaccc tagtccatca
      421 actagctgag atgcttggta ttgatccatg gctaatcggg ccttggggtt ttgttagtcg
      481 tggacgttgc cttgaggaga tcgagtgtag ggagcgtctt gcagcggaga tagaactagg
      541 attggatttc atttcatcta agtacaaaga acatggaatt gatggaaatc cttcactatt
      601 catgaagaac gatcgaggaa catatgggtt aggtatcctc cgcattgact ctcccgagga
      661 gattctcaat ctatctaaga ggaagatgaa tcgcctcaca tatgggcgcg ggggtgtcca
      721 agccgaggac ttccttctcc aagaggcagt ccccacccac ttgcgtagta atgggggtgt
      781 aatcgaacca gttggttacg gtgtgaacgg gcttgtcctc tcctggttcc atcggttgaa
      841 cctgaagcat ggtcctattg acaatttgaa cacaccttct acttccttta ttgtagactc
      901 cgagttggat gaagattcgg cgcaatatct cctcaatcgt cgtatcttac accgcaccct
      961 tgcggagatt tcgatgattg cgatgactct cgaagtgaag gatcattcag gatctgattc
     1021 agattgattt tcgtcctgct ccatccctac aatctcgtag tttgagggga agagggcaat
     1081 tgcaacgccg gcaacgaagc aaagcattgc ccatgtgtag gcatgagtga cgattagcaa
     1141 ctctaatccg atcaccatta gaatgagtcc tccaacattt gaggtccaga cgagggtctt
     1201 gaatgtggaa agggaaactc cacttgaacg gctagatcgg tagggtccga attcagcacc
     1261 gaaccgaatc ggctcctcgg gttcttctgc catgtgtggc cgagatggcg aaccatattc
     1321 aacactatgt cgaggttctg tggctcgtaa cgaacgattg attcaagcca gagggcgtat
     1381 ggaacacgat tgaggagtcg agatgcacat cgccatgctc agtggtgaat accctccgcg
     1441 ttgggggggt atggggtcaa cggtcttcca tttgtcagct gctctcgtag cacgtgggca
     1501 ccgtgtgacg gtaatcacgc gtaatggggg tggaggatct cctcctgggc aagatggcgt
     1561 caaggtccgt atcgtcaatt gggcgaaaat accgatggct ttcacccgtt cctatggtaa
     1621 gtatgcattg aatgacctag ttcgtttaca ttcagaggac ccagtagatg ttgttcatct
     1681 acactgtcca atgatatctt ggaatgcacg gcagttcaag acctgcatct cgaaggttgc
     1741 acctgttgtc tcctcactcc atggatcgtg gctcggggaa cgcgatggcc tcttgaccgc
     1801 tcgacgccag cgcgaagctg ctgtctgggc aaatccaaat gatcttgcta tcttgctaac
     1861 ggccggctat tacgcccgat ttgagaaaga tgcaatccat ggttccgaag tatgtgtggc
     1921 gaattccaag gcaactatgg aggattttgt tatgagatat cagcctccag ataattggga
     1981 ttgtgaagtt gtccattggg gggttgacac tgagatgttt gtaccgattg acatggatga
     2041 tgttgaatca accaagcaga gggactctct tcgtctgaaa tatggtgttg atgattcatc
     2101 taatctaatt ctcgcagtag gacgtcttgc tgctcggaaa ggatacggtt cgttgttgaa
     2161 ggcctttgct aaggtgcatt cggccaaacc tgacactacc ctggtgattg tggggagggg
     2221 gcacctgcgc aaacgcctcc ttcgtcaggc ggctcgcctc tcacttgact cttcagtagt
     2281 gatagagtca gggatgcctt tcgatgatct cgctctgcta tttaggtctg caaatctcgt
     2341 cgtatatccg tcatactacg agggtcaagg cctcatcccg ttggaagcaa tgtcttcagg
     2401 aacacccgtt gttacggtac atcatggccc gttacctgag atggttgaca atacggtagg
     2461 ctctcttttc aagatggggg atgttgattc aatggctgaa tctatcctcg ctgaactaac
     2521 caatccggaa gagctctctc tcaagggtga ggctgggcgt aagcgtgttc ttgagtcatt
     2581 tacatatgct catgatgcag aacgctttga gtcgatttat ctacgtgcaa tgcagtaatc
     2641 catctcagcg gtcaatcatg atgattgcat ctgtagggca ggcgaaaaca cagagtcggc
     2701 aacctgtgca tgggtcacgt agaatcttcg ccttacgatt aatatcgacc ttcattaggg
     2761 ggctcgcgag tggtttgtcg tagagttcaa tcgcgtcatc gtcacatacg attgtgcatt
     2821 ggtcacaacc aatgcattgt tcttctttca cgaatgcgac ggtggtttcg ccacctttga
     2881 cactggcgcg ttcctctgcc ttggctgcgt tcaaggcgat gcggatgcgg cgctgaacat
     2941 ccgttctccg cgaggctacc tcgtctcgac tcgccatgta tggatttggg aaatgctacc
     3001 tcttctcaag gcttggcata cttggatgat ttcatttgca atatttgatt ccactaatca
     3061 tggaggtttc agagtccaat gtttcagtgg aacctgagag gtggcagaat gactttctct
     3121 cgattataat gcttatttta ggccccattc tctggttatt gttagtcact caactacgat
     3181 tcagtgtggg ttggttggcc tttgtttgcc aagcacaggt aggcttctac ctttggttga
     3241 cagttcttgc ttatgggcac aaaagggcgg cgcaatggac ttggtggggc gtaggtatca
     3301 ctgcgatact ctcgttatgg tcgcttatag tggccctaat ctgaggatta agcttgtttc
     3361 tttgcttcta tctggcgtgc gaggaaggac acaacatcga gaatctcaaa gtcatgtctt
     3421 ggatctcctt cgaactttag acattcaaag tgagatacac acttggggca tgttgtgagc
     3481 ataatctcgg caccagtgtc gcgaacttct tcgaaacgct caatccggag tgcacgtgaa
     3541 ttttcattgc aggacatcat cgaggagacg ccacagcata gcgagtcttc tccatgatgc
     3601 tccatctcga cgagatcaac tccctcgatt cgctgcacta gttctcgagg ttcgtcgtag
     3661 atattcatct gtcggccaag tcgacatgga tcgtggtagg tcaccgtagt gccttctgga
     3721 actgaagctt cgaattgata accggcttca attaggtact ccgtggtatg catgaccttg
     3781 aggtcatcaa gttcgtagtc catagcgaag gtgcggaaac attcagcaca tgaggtgaca
     3841 agtgtctcga taccactctc gccgagtttc ttctggttgt acgccttgag tttctcaaac
     3901 acttcagtca tgccctgcca tttctggtcg tggccacaac acttcaggaa gtcacgtcct
     3961 aagtaggcca catctacccc tgcatcctca aagagggtga atgcagcatc tgtggtctgt
     4021 ccaaggttca tcgtaccctc gttgacatgg ctgaaaatca tctcctggtc gatatagtcg
     4081 acacagccgg ggtaataccc aattgtggag tctattgggt aatcctcgat ggcgacgaat
     4141 tgctcactcg catcttcctc ggcttctgct ctgatgacag cctggaggat tgtgtggggt
     4201 atctctgctg caggtggacc tcctacgatg agattgcggc gaatatcgat gtaggaatcg
     4261 tagtcgacga gttgtgggca ggcattggtg catgcagtac aagtcaagca agagtacaac
     4321 ggaacaccgt cgtcttcatt gttccatgag ttgtagataa tgttcaactt gtcaccggcg
     4381 ttgaatagcc ggacagggca ggcatcgtcg cacagatcgc aaccgtagca tttgttcatc
     4441 tcgtattcgt agccccgagc catgctgcgc atcaagaaga agacaagggc gccaactccg
     4501 agacatggta tgactagcga ataggtgagt ttcgcgtcta ggctcttcgg gttcttgaga
     4561 taagttgggt tctctagcgt atgttccgag aggctagatg cactatacat tgggcttcca
     4621 gtcaataggt tgagtgctgt agagtcggag aggttgacag cacgtccatt ggcgtctaga
     4681 acaagaggtt ggaacgcctg gatggaaaca tctgtgatca catttccagt atcgttgagg
     4741 ccggtggttt ctacgctata gtcgagcata tagtctgcac ctgaggcaag cttcagtgtt
     4801 tgagtggtgc aagtatccat ttcagtgatg actgcaccag taatatcctt gacaatgagc
     4861 gatatagtgt gctcgccaac gttgcgtatc gttgttcgga tgttacaccc tacgtctacc
     4921 tggagggtgt cgacaccaag attgggcaca ttcatcgtac cggaatatgt gaacattaca
     4981 gaagttccat cattcgaacc agaatactcg gaggccgaga agagtccatt tcttccgcta
     5041 tcggtgtcga cgtgcttgtt tgctccgttg aagtcgatga ctaattcttg tgtgggctgg
     5101 tatatccccc aattggagaa ctctcttgcc ggcattacac agaaatcatc gtaggaccat
     5161 gccccgtctg caaagtgatc gtcatcccat gcgatagagt tggaagatga actgtaagtg
     5221 aggcacattg caagcatatg ttctgcatgt tcgctctccc ttaggtcaat gagtgtatca
     5281 cttggctggc tacgcagggt ttcaagatcc tcgacatctt gcatggctcc aaatccaccc
     5341 atctcccaga atccattatc gtagacgggc catgtcacgg tgcagaggag gattgctacg
     5401 aggagtgaac caaaggctac atttcggtta atgtttggcg taatccttgc gccttgtgtt
     5461 tgcaccatga accaacgaat tccaaagtag acgacggcaa atatgaacac tcccgtgagg
     5521 agccaaggta tgctgttgaa cacctccgca atccaaggcg atcttgtacc gcatgatatc
     5581 cctgcatggg aattcatctg gcagaaatcc gttcgattct tcccatagag ttcgaggaag
     5641 atgttgattg agtatacgga gatgaaccac acgtgagcca aatacaccat gcctgctgtg
     5701 gcaaaccacg ggtcctctac acctcgcttt tccctacccg ggatgaaggg aggtagtgcg
     5761 agtatcatga caggtatacc tgtgattgca gcgccccacc aaccagcatt ccatgatatg
     5821 attggagtgc cgaagaagtt cccaattgcc tctggtaggg ggatgtcgaa ttgtggaagg
     5881 tattctccaa gtcggaggta accatacgag aacagcacat accaatctgg gaatacgaat
     5941 cctgcttgag cgaaagggtc agctgcattg tggagtggtg gaggaattag ccacgagtag
     6001 aagcagagaa ccatcagaac agacattgca atgattgtat ctcgaaggac ttcctgaggc
     6061 cagaaagcat ggcctgtgaa tacacgccgt cgctcttgtt ctgcctcaag gagttgatca
     6121 cgttcgctaa cgtaggtgtc cgcgacccga ccaagacgtt cgataattcc cataactcaa
     6181 cctcctatca gtgcggctcc gcaactcctt gaacccatac gatgaacagg tggacgataa
     6241 tcagcgtagt gacgaggaca ggtaggatga acacgtggat gaagtacatc ctggtcacag
     6301 cttggtaagt tagggtactg cctccgaaca tcgccgttgc aacccatggg ccgattaacg
     6361 gtgtagcatt tgccatattg atcccgatgg tggctgcgcc gaaggcgagt gcatcccaag
     6421 ggagaagata tcccgaatag ccgaagaaga tagtgaagaa catcagggct acaccaatga
     6481 gccagttgag ttcacgaggg ttgcgatatg ctccggtgaa gtagacgcga cacatatgca
     6541 ggaatactgc tgccaccatg aagtgtgtag tccaatggtg gattgaacgg atgatatagc
     6601 caaacggcaa ttgggtcatg atgaattcca tgcttgcgta ggccggagtt ggatctccca
     6661 tcccgcctgg gacgtagtag atgccgagaa tagttcctgt gattacgaga atgataaacg
     6721 caaggaacga aattcctcca aggcagtaga gtgggtacca gtaccagatg atgcgtagtt
     6781 tgtacttctc ggcatgggtc agtggcatct gacgatgcat gctgtagtat gcgtcgcgag
     6841 acatcgccca gtaatcctga attcggaagc gggtgtccat ccatgagaat gcccagagga
     6901 aggatttctc aagaaggcca attccgcctc cgcctgcagt ggtggtttgg accgcgcgca
     6961 agatttcctt acgtgggacc tcttcacgtt ccttccgaag cgtgaatgct acgatgacga
     7021 ggatgatggc taggaagagc cagagtacta cggattcaat cattttttca cctcagtcgc
     7081 agaatgtgta ccagtccaaa taagtcggga gagcctcaat tatgtctccg ttgacttcga
     7141 aggggattag aggcattccg actggagccg ggcctcccgt tagcttgacg ccaaagtact
     7201 cgaacatagt gccgtttgtt cggttccgat tctgattctt ctcaatcatg gtcgggtcgt
     7261 atcggctgga atgacagata cagaatagtt tgtttcctcc agagtcggtt cctccagggt
     7321 accatgtgtc cgcagtaaag tcattgggaa ctagctgcca tccagggatg cagcataggt
     7381 gagggcatcg gctgaataca atcaccatgt tgtcatggat ggcaagatct gcgtaggtgc
     7441 tgtcttcttc catgtcacct ccatagccga tataggcgcc agacaaatcg tagccatcgc
     7501 catactggaa tcgtggctta ttctcaacag gcgcggttcc agagttctcg gcatgtggca
     7561 cgtagatgac agtcaccggg agtccactcc atacgccagc cgctccagcc atgccggtgg
     7621 atgaggtcgc agcctgtgtc tcaaagacgg acttcgtcat tggttcaaga tgcatgttcc
     7681 cgtaccaagc ggtatcctct gcaccggagg gtacccagaa tcggacagcg gagtcgcccc
     7741 catctgattc ggcaacaccc atgagtagag atgcgaaacc gatcgatccc agtgaggctg
     7801 ctgcaatcac gcctgctgca ctgttaaacg aatgccggat gaagtctcgt cgatcgatga
     7861 gacgtgtgcc tccggctgtg acttcgttag catcccctgg tgcctgacgt agcttgaatt
     7921 tcctactcat cataatcacc tcaagattcg tacctcttcc acgaatttgt atccttaggg
     7981 gggatgaact tgtttcgtcg atgtttgacg actacaagat cagggagcac gaatcgaaga
     8041 tagataatcc ccatcataat cagggtcatg aggaccatcc cgaggtggaa tgcaagttgt
     8101 tgctgatccc agtcattgag caatccgtag gagagggtga atgcccagta tgtagtccaa
     8161 aagaggcccc agacgaagaa gaggaccatg aggcctgatt ctgcagaggg tgagattgtt
     8221 gcacgaacca ctgtgccagg tttcggctta ttgaatacgc cgtgatctac tgctgaggtg
     8281 tattgctctt cagtaaggga tacgccttca agagctgtgc gagcatcctc gatactcact
     8341 actccactct tgacctctcg cagaagagta agtagggcgt cgtccttcac agttggtccc
     8401 ccctgcgtag gtgcttaatg cgaagtcgaa gcagattact acgtcccttg taatgtcggc
     8461 tgaatccata tcgtaggaat aatccacaga atacgaggac gagaataact gacaggaatc
     8521 ctaggagtcc caaccaatga gcgcgaaact ttgcacccat gtggtgaaga tcagtgtgtc
     8581 catctgatgg tggcgctggt ggttcgatgt taccgtcgcc tgagaataca gtccggcgat
     8641 tgctatcgtc agtcccctcg atgattacag cggagagtcg attccacata tcttgaggtc
     8701 caggtactcc gtctccattg actgagttgc caacaagcca gatggtagca gggccactct
     8761 cggtgacagg ggcagtccag acgatgttcc atgaacgtga ttcgagattg cctccactat
     8821 ctgtgtgagt aagggtttga gtatcgtcac tggccggtcc gttgaagttc tgtggagatg
     8881 ccattacttg atcttctgag ccctctcctg cggcgagtat gccttgggat actcgcatcg
     8941 agaaaccggc actgtattca cttcctccgg agtggtattc tgctccacca atgatctgga
     9001 ttgtcatttc gtaggtttct cctgcaatgt ataccgatgg cacgccgtcg aggatgactg
     9061 tgactgagcc gctagggtca acgttgtggc atgtgcaacc tgccaatgcg acatctcctt
     9121 tgccatcttg gtcgaaacct atgccgcctg gccaagctcc cacagaggcg ggaccgaagg
     9181 ccagaatcaa catgagcagg gagagcgtca gtgcgcgccg aaccggcgca gtccacggac
     9241 tggacatgct catgttctag gccacctgaa aaggggatat taacgttccc aaaagaggac
     9301 actttttcga tggacagcga agcatctaga tgcctccctt tcattggcct taaatcctca
     9361 ttattttgtt cgatattact acccctcttt cgccgcatga ttgaaacccc tgctaggcgg
     9421 tgaacgattc atggcgggcc gtgcgtggaa gaacacttac cgtttgtcgg atgctcaact
     9481 tgagcatctt gatctagctg aagagcggat ggaggcaatg gatctctccg aagctgagag
     9541 aatcctcctt gagatgttgg atgagagtcc acagtgcatt ccagtactga gtaatcttgg
     9601 tcacctttat ggacgccatc tctcagattt tgagaaagcg gtcgaatact atcagatggt
     9661 cctcgatatc gaaccagata acgcttgggc aagagatgag cgtcgtcgat atcagcggta
     9721 tctgacctac gactgaggga aattcatgca ggacggcgct ctccttcttg ttggtgcagg
     9781 ggggctaggt tgccgttggg ccagctatgc tcatctcgat gtggaagaag attgcgattt
     9841 actccttgtg gattctgatc cattatccct tgatctttcg gagagtgcct ccacagtatg
     9901 tctcggtcca gagggttcgg agggagcgat tttgcctgaa ttaggacatg attgggcaaa
     9961 agctcatgct tccgtttttg cggacatgtt tgacagggct gaactagttc tcattgctgc
    10021 aggacttggg ggaggtgttg gctccggggc ctccacatgg cttgctgaac aagcacgttc
    10081 atccggtgca ctagttgtta ctgtggtcgg cctacctttc gaggatcaag tggcgcggat
    10141 gcgttgggca cggcttagcc gccctcgatt agaggctgct tcacatgcaa cgatcggcat
    10201 ctccctgtca gcactagctc tgcgagcgga gaagagaggt gcagaatggg agtccggagg
    10261 cggttgggtc ccgtcattaa tccgggcctt ggtacaaact caggctcgta agggcgtaat
    10321 aaatctcgac ttgatggatc taaggacagt tcttactcaa gcaggccggt caacggtgct
    10381 cgttgctcaa ggtgattgct atgaccctca gcgcctattc cagaaggcct tcgatgcacc
    10441 actcgaacgg attgatcttg tgaatgctgc aacgtgtcta ttgcatatcg aaggtggcga
    10501 ccaggtaact cttggcgact tcgatcggat tgctgatgca ttcactcgtg ggttatctga
    10561 caactgccac gtaatttacg gggcttcgat agtccgcgaa ttggagggcg aggtccgagt
    10621 aatcgctgtt cttgctggtt tatgacgcgt ctatgagttc gacttcgtct tcgtcttcaa
    10681 tgagttcaat ttcatcttct atttctacaa gtttaatctc ttcatcgtcc tcggatattc
    10741 tgttgatttc tggtacatcc acagtatcaa tttcgttgat tatgccttct tcatcactgg
    10801 attcagcgtc atctttgaga gtagattcga cagttgtatc gttcttccat cttggtcgtt
    10861 gaagtgcctt ggagaggccg agaagtagag ttgatgcggt tagaacgtgg cctatgccaa
    10921 gtgtcgatgc aatacttcct atgccgaatt gcttgctgag gaggccgatt agtggaaggt
    10981 ctcctatcaa atcggtagag
//
LOCUS       DUKB01000143            5569 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_112468, whole genome shotgun sequence.
ACCESSION   DUKB01000143 DUKB01000000
VERSION     DUKB01000143.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5569)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5569)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5569
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_112468"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="HA345_04775"
     CDS             complement(<1..231)
                     /locus_tag="HA345_04775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84704.1"
                     /translation="MQSENEDSTQPLLSGEVSPTSETTYFVPFEEPPTQIARIIGIIA
                     MVMGALSIVGGLMNIGTGQVMSFFSNDLSRMDV"
     gene            complement(283..1017)
                     /locus_tag="HA345_04780"
     CDS             complement(283..1017)
                     /locus_tag="HA345_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84705.1"
                     /translation="MTSSSGEDIEWVSFGGGVVVLGGSRRGILFGDIGPPHESRVQAF
                     EISRRGYTISEVEERFGAKGGWEVAMTAAGIRPPTEGEWICAHDSDVLEPVAGDELLI
                     DRIEPRGYWGQPTDGRPKGPNGQRLIRRRSNSGDYIAHLAPSEIPEGFVRFVRPVRPP
                     QGWEGDGNPLPRGPDPTRRFSEESIIAIVVGIIPSFAWAAVNARPGYIAEGWPGLILG
                     GLMLSLLTGILWRPRFHLFKIDPEPE"
     gene            complement(1021..2853)
                     /locus_tag="HA345_04785"
     CDS             complement(1021..2853)
                     /locus_tag="HA345_04785"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012235.1,HMM:NF012869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84706.1"
                     /translation="MSMAVPGVAQDSSDLEDQQQIVGRRIWMVVPYILVYWRRALGGI
                     ISNAVARAFDLIPFVAIGMAADYYSSGVYTSDLIESIVSPSPEVRFGLLIFAGFTGLA
                     VAQGLSDYLWQSTAYKVQHDIRMDATASLMAMEASYFEVRQSGNLMSVLSADVAQLED
                     IVSDSSTSIIRLIVTFSTAFLILIWMSYKLALTLFLPLFLIAPMVYWFSTRVQRRYRR
                     QRESTGGIVAILENVLAGITVVQAYNATDHERERVHGESAEYRDQAIGASAIRNRFVP
                     GLYVVAGVAFGLLVTVGGFLMAGDEITVGQFVTFLLISTRMTMPLFIMGLLLNQLQRG
                     EAAARRVFALVELTPSISDNEDAIPLDERIESIEFSGVTFAYPGTDARVLNDVSFSVD
                     NGGFTGIMGHTGAGKSTILKLIERFYEPQIGQVLINGADINEYTLESVRSRIGFVSQE
                     PFLFFGSLRDNVAYARESTDAEVEEALRTAGAWEFVKDFEDGMHTMVGDRGVRLSGGQ
                     RARVSLARALLTNPDVLILDEASAALDAETEKKIQQSLFGSEGGHRLTIAVAHRLATI
                     RNAGEIICMVDGVIVERGPHGDLLSSNGVYASQWSIQTGDLLEE"
     gene            2971..3042
                     /locus_tag="HA345_04790"
     tRNA            2971..3042
                     /locus_tag="HA345_04790"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3004..3006,aa:Gly,seq:tcc)
     gene            3192..4949
                     /locus_tag="HA345_04795"
     CDS             3192..4949
                     /locus_tag="HA345_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84707.1"
                     /translation="MNRPLAALVLCFIMVLMPLAGCVSQADVDSAIADHDADIADKQN
                     TIDNLTTEVSELESQMLAQDVFITNLQSELSNVSSDYNTTLLAHYALQSEHASVQAQL
                     ASAEYNATAHESQIDSLETQLELANNHISLLNDLMSNTSNTTNESFAQMSNQMAQMNE
                     HISNLSALLNYSTARHQENVTLVASLITQQSELSAELSNITNLLTVANLTISQLQDEI
                     DQLSTVVVSESYFHGLLNGSERSTKFRDLDSVKLDPIHYGSPNLTIENQGFETYMNYS
                     TSVNRSHSLWFELCNTSIGLYNSDWFTRALGINYTTHSSNGWSISNYNSTMLLNLTFD
                     WDGANAVTRNCLVWSTTPNQNGSTNFVYPNFDLLSVEFGWTTNNPVELRVFACMQSGP
                     DVCTSEHNWLERGSGNAEENYSYYGHQEYEGDFLHPIETGFAVPVGINDNSCLMNRSI
                     SGRTGCTPPDCISSFDNGGSSPCSIHIIDWGTGSGTYNYDLYNVTNLYADFGTGSSTH
                     NIYICDSQFYADVSMSTGSNNVRIYSYGWGAGNNVTIDSSYNTGTLNGNGNRSVDYYM
                     GVSSISLSVYEWADGAWSC"
     gene            5084..>5569
                     /locus_tag="HA345_04800"
     CDS             5084..>5569
                     /locus_tag="HA345_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84708.1"
                     /translation="MSSPYLRNVQTIGEYYADAFTADNQFGIGMISNWLSLIVLIWLL
                     SLSFLIIRANSSASENRFMAVLIACEGFKAAYHMKNLTPNGHEWWFIDQYLWNFNTTF
                     FISAHVCSVAMYLCFPIYYRVKQLSFLYKPLFQRHVWYIMPLLTMVFMIIAADLWVYE
                     NN"
BASE COUNT         1589 a         1356 c         1228 g         1396 t
ORIGIN      
        1 aacatccatc ctacttagat cattagagaa gaaactcatt acttggccag taccgatatt
       61 cataaggcca ccaacaattg aaagtgcacc catcaccatg gcaatgattc caatgattct
      121 ggcaatctga gtaggtggct cctcgaaggg tacgaagtat gtcgtctcag atgttggaga
      181 cacctcacca gacaacaatg gctgcgtaga gtcctcgttt tcactttgca tgtgtattgc
      241 tcccctccaa atgtggatta gtgtatcgtt ggaatcaatg aatcattcag gttctggatc
      301 aattttgaat aaatggaaac gtggacgcca gagaattcca gtcaataggc taagcatcaa
      361 gccaccgaga atcaatccag gccaaccttc tgcaatatat ccggggcgag cattgactgc
      421 agcccacgca aaggaaggga tgataccaac gacgattgcg ataattgatt cctcagagaa
      481 ccgtcgtgta ggatcaggac cccgaggtaa gggattacca tcaccctccc aaccctgagg
      541 tggacgaaca ggacgaacaa atcggacgaa accctcggga atttcggatg gagcgagatg
      601 agcaatataa tcgccagagt tactccttct acgaatgagg cgttgaccat taggcccctt
      661 cggacggcca tccgtgggct ggccccaata tcctcgaggc tcaatccgat ctatcagaag
      721 ttcatctcct gctactggtt ccaaaacatc tgaatcatgg gcacaaatcc actccccttc
      781 agttggtgga cggattcctg cagcggtcat cgccacctcc catcctcctt ttgcaccgaa
      841 gcgttcctcg acttcgctaa tggtgtagcc tctacgacta atctcaaacg cttgaactcg
      901 ggactcatga ggagggccga tatcaccaaa caaaatcccg cgtcttgaac ctccgagaac
      961 cacgacccct ccgccgaatg aaacccattc aatatcctcg ccactggacg aggtcatatc
     1021 tcattcctcc aagaggtccc cggtttggat actccattgt gaagcataga cgccgtttga
     1081 agagaggaga tctccatgag gcccacgttc tacaatgact ccatcaacca tacagataat
     1141 ttcccccgcg ttacggattg tcgcgagacg atgagccact gctatagtca atcgatgacc
     1201 tccttcgctg ccgaataagg actgctgaat cttcttctct gtctcggcgt cgagcgctgc
     1261 tgaggcttcg tctaagatga gaacatctgg atttgtgaga agagcacgtg caaggctgac
     1321 tctcgctcgt tgaccaccag aaagtcggac acctcggtca ccgaccattg tgtgcatacc
     1381 gtcttcgaaa tccttgacga attcccaagc acctgctgtt ctaagcgcct cttcgacctc
     1441 tgcatccgtg gattcacggg cataagcaac attgtctcgt aatgaaccaa agaataggaa
     1501 gggctcctgt gagacaaaac cgatccttga acggaccgat tccagagtgt attcattgat
     1561 atccgcgcca ttgatgagaa cctgtccaat ctgtggctca tagaatcgtt caatgagctt
     1621 cagtatggta ctcttacctg caccagtatg acccatgatc ccagtgaaac ctccattgtc
     1681 aacactgaat gacacatcgt tcagaacacg agcatcagtc ccagggtacg cgaaggtgac
     1741 accagagaat tcaatacttt caatccgttc atcaaggggt attgcatcct cattatcact
     1801 gattgaagga gttaattcaa ctagagcgaa gacacgacgt gcagcagcct cgccccgctg
     1861 aagctggttg agcagtagcc ccattatgaa caacggcata gtcatcctcg tggagatgag
     1921 gaggaaggtc acaaactgcc ccacagtgat ttcatctcca gccatcagga agccacccac
     1981 ggtgacaagg agaccgaagg ccacaccggc taccacatag agcccaggaa caaaccggtt
     2041 gcgaatcgca gaagcaccaa tcgcttgatc acgatattct gcactctccc catggacacg
     2101 ctctcgctcg tgatcagttg cattgtatgc ctgaaccact gtgatgcctg caaggacatt
     2161 ctcaaggatt gcaacgatgc cacccgtact ctcccgttgg cgccgataac gacgctggac
     2221 acgggtcgag aaccagtata ccataggagc gattagaaag agtggaagga acaaagtcaa
     2281 tgctagtttg tatgacatcc agatgagaat aaggaaagca gtactgaacg ttacgattag
     2341 acggattatg ctagtgctag aatcagagac gatatcttcc aactgtgcaa cgtctgcgga
     2401 tagaactgac atcaagttac ccgattgtcg aacctcaaaa taagacgctt ccatcgccat
     2461 caggctagca gtggcgtcca tgcggatatc atgttgaacc ttgtatgctg tcgactgcca
     2521 aagataatca ctgagccctt gggctactgc aagaccggtg aacccggcga agatcaacaa
     2581 accaaaacgg acctctggag atggagatac aatcgactca atcaaatcag atgtgtatac
     2641 gccagaactg tagtaatcag cagccatacc gatggcaaca aaaggtatga ggtcgaaggc
     2701 gcgagcgact gcattactga tgattccccc cagagctcgc ctccagtata cgaggatgta
     2761 ggggacgacc atccaaatcc gacgtccaac gatttgttgc tgatcctcaa gatccgagga
     2821 atcttgcgca acaccgggaa ctgccataga caacagcctc acggggtgaa agccgctttt
     2881 caacccgtgt gactattcgt gatatctacg atgatactga aggataccaa ccgaatcgaa
     2941 taaggcagag tgatgattcg gaggggtgac gcgcttgtag tgaaggggtt atcaccagag
     3001 gtttccaacc tcttgtcccg ggttcaaatc ccggcgagcg cactttcaaa aaacgcatac
     3061 agaaacccgt aatcgggtgg gtaaaaaaca caattaggtt cggttgaggt agggttccgg
     3121 tatggttccg gatggctcaa tggaagaatt ccaacagtga atttcatttg cttgaattgt
     3181 aaccggagtg tatgaataga cccttggccg ctcttgttct ttgtttcatc atggttctca
     3241 tgccactagc cggctgcgta tcacaagctg atgtagattc ggcaatcgca gaccacgatg
     3301 ctgatattgc agataagcag aacactattg ataatctgac aacagaagtt tcagagttgg
     3361 aaagtcaaat gcttgcccaa gatgtgttta ttacgaatct tcaatctgaa ctttcgaatg
     3421 tgagtagtga ttacaatacc acgcttctgg cccattacgc actacaatca gaacacgcct
     3481 ccgtccaggc acaacttgct tctgctgaat acaatgcaac tgcacacgaa tcacaaattg
     3541 actcgcttga aactcaacta gaacttgcta acaatcacat ttcattgctt aatgacttga
     3601 tgagtaacac aagcaacacg acaaacgaat cgtttgcaca aatgtccaat caaatggctc
     3661 agatgaacga acacatctca aatctatccg cattgctgaa ttattccact gcccgacatc
     3721 aagaaaacgt cacacttgtg gcttccttga ttactcaaca atctgaattg agcgcagaac
     3781 ttagcaatat cactaacctt ctaactgtgg ctaacttgac aatcagccaa ttgcaggatg
     3841 aaatcgacca gttgtccact gttgtggtca gcgagagtta tttccatggt ctattgaatg
     3901 gctcagaacg aagcactaaa ttcagagatt tggattcagt aaaattagat cctattcact
     3961 atggttcacc gaacttaaca atcgaaaacc agggatttga aacatatatg aattattcaa
     4021 catcggtcaa cagatcacat tcactatggt ttgaactctg caataccagt attggcctct
     4081 ataattctga ttggtttacc agagctttag gcatcaatta caccactcat tccagcaatg
     4141 gttggagtat tagcaactat aattctacca tgctactgaa cctaactttt gattgggatg
     4201 gtgctaatgc tgtaacaagg aattgcttag tttggtccac cacgccgaat caaaacggat
     4261 ctacgaactt tgtatacccc aatttcgatc tgctttcggt tgaatttggc tggacgacca
     4321 ataacccagt cgaactgcgg gtatttgcat gtatgcagtc tgggcccgac gtgtgcacaa
     4381 gcgaacataa ttggcttgag cgtggaagtg gaaatgcaga agaaaactac agttactatg
     4441 gtcaccaaga atacgaaggg gacttcttac accctattga aactggtttc gcagttccag
     4501 tcggtataaa tgacaactct tgcttgatga ataggagcat ttcaggaagg acggggtgca
     4561 ccccgccgga ttgtatcagt tcttttgaca acggcggctc ctcaccgtgt tcaatccaca
     4621 tcattgattg gggcactggc tcaggtactt acaattacga tttatacaac gtaactaatc
     4681 tatatgctga ttttggaaca ggatcttcta ctcacaatat ctacatctgt gattcccaat
     4741 tttatgccga cgtatccatg agtacagggt cgaacaacgt gagaatttac tcctatggct
     4801 ggggtgcagg taacaatgtg acaattgact ctagttacaa tactgggact ctgaatggaa
     4861 atggaaacag gagcgttgat tactacatgg gagtatcaag tatcagttta tctgtttacg
     4921 aatgggcgga tggcgcctgg tcttgctaag ataaagtacc agattctcaa gaatcaatag
     4981 gctgagtcaa atttccaccc accccggcgg cgcactttca aaatcgctta cgtaaaggcg
     5041 aaaaccggat ttagcaagga aacttactat tcggaagagt gttatgtcca gcccctatct
     5101 gcggaatgtg caaactattg gcgagtacta tgctgatgca ttcacagcag acaaccaatt
     5161 cggtattgga atgatatcga attggctcag cctaattgtt ttgatatggt tacttagtct
     5221 ctcatttcta ataattcgtg ctaattcaag cgcttcagag aatcgtttca tggctgtcct
     5281 gattgcctgt gaaggattca aagccgctta tcacatgaag aatcttacac caaatgggca
     5341 tgaatggtgg tttattgatc aatatctttg gaacttcaat acgaccttct tcatttcagc
     5401 acatgtttgt tcagtagcga tgtatctctg ttttccaatc tattacagag ttaaacaact
     5461 ttcattcctc tacaagccat tattccaaag acatgtgtgg tacataatgc cactattgac
     5521 gatggttttc atgatcattg cagcggatct ctgggtatac gaaaataat
//
LOCUS       DUKB01000144            4452 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_120330, whole genome shotgun sequence.
ACCESSION   DUKB01000144 DUKB01000000
VERSION     DUKB01000144.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4452)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4452)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_120330"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2859
                     /locus_tag="HA345_04805"
     CDS             <1..2859
                     /locus_tag="HA345_04805"
                     /inference="COORDINATES: protein motif:HMM:NF025910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HIH84709.1"
                     /translation="LSPFISLYAQISRKSASDSIVTFREFVLNVFSVCLIIVFLLTPV
                     AYFGYIELNEVENSTWESIENEWDDASPFQRNLALSEMVCLDTRGIDSPLPVVASASS
                     EQECSELVNLVRDPITREWEEDYYGRWVSNQDRININVNIDTIDWVSIGLLVFMSPTI
                     IAYGRIMGASWNVIVRNKYRTLRGQKTPIDPDPPSIMKRVNATILVLFLGTMPLAAIN
                     GISTLVWTKLENPDNLRYILDLGGIVGNSLLMFVEGNEFLKTWVDLKSLSFVLAGYLM
                     LNVSVVGLALIFEMIRNLFLGGQVIGGVGGVVLGAPREIRAESIVQSRIIAFGLAGFA
                     GYSVLLLIMQVYKEWAELMPYSDSIGFLTGDQVELLLLEGKWNFIAAGQGIFILTWLL
                     SISRWRTVGITKFDLAPEERRSGAVRTNDGNWIRDYVMQAARQDDLGALRRFQDNPIE
                     ADESLLRLERGRAKMFEYAMRGLWPNAIEAAKTTLAQQGGNDDNARMLIAVGHIASRR
                     LDASKMALKGLLMEDEEDEPELIEFISEWMDPWADRVDEDDLYDWENESTIDQIKELQ
                     SKIESWDPVSEIGHIHRNRLAHNALISSVAQLRAQRRMDEALDLAVGLVRRYPNSSKA
                     RIACALCSLDLGNWHDALEIFRDLQLTGPEDPRVKALGSILGLKADTEEFEVALAVGT
                     VAEKKPWLDQAPCNPFIGLAIKGGLDEALNANAFSIAHEAVERLTAPIISPTLLQNFI
                     RWGLLPLVWLSLGAIILLETGDTSAAGLVGFGLVSAHIAAVRFRNQTSHQVRHRNQPL
                     MVRMARRLKKEKVVGDLSRSPVGNHLLLSGILLEVGGVILDVGFPLWMVERSKSVRSR
                     TWKVLMHERMASLRNSKLPRCDPLPNRWWLRRPRPYEDDTPAMERLVGPVHYRPMRKL
                     EPPERNVQIKGPTSRKAKKQPKGNLNVKFRGSGVIGDS"
     gene            3192..3863
                     /locus_tag="HA345_04810"
     CDS             3192..3863
                     /locus_tag="HA345_04810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84710.1"
                     /translation="MASVIEWPFRFHVDQPVHPGVEVGDIIRIVERLTGLSWKATWKD
                     DGGRNLMIHLEPIEMPIKPEISKQKTTGVEIDIGVDWIQGLPLVNSSPIVFLTSESIV
                     EFIRLLNEVPPPGCPEKDKFPDADSNLEKLLIELVGKSMKPQLPLILDWDEDNSAIMK
                     HLTDRGFIRSYASSNNVIEYESIMPRSFVCGPIVSAWEASTGEIAIVKMASSGQNKHT
                     ISFRN"
     gene            3943..>4452
                     /locus_tag="HA345_04815"
     CDS             3943..>4452
                     /locus_tag="HA345_04815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84711.1"
                     /translation="MAHLWVSDHMPLDHNQWAVVAIVSTLCLAGVYTVVDSGISTTET
                     GGFEPATNDLSPTEIDVTFTEGEDTDGDGISDRMEQTLYGTDWRNNDTDGDDLEDGWE
                     IANGLDPLDDGTASGEEIVGGDPDAQPDDDNTEQNETFPDPNNGPDGDPDRDGLTNRD
                     EANLGTNPNL"
BASE COUNT         1190 a          889 c         1099 g         1274 t
ORIGIN      
        1 ctttctcctt tcatatccct ctatgcccag atttctagaa agagtgctag tgattcaata
       61 gtaacattcc gagaatttgt cctcaatgta ttcagcgtct gcttgattat cgtatttctt
      121 ctgactcctg ttgcttactt tggctatatt gaattgaatg aggtggagaa tagcacttgg
      181 gaatcgattg agaacgaatg ggatgatgct agtcctttcc aacgtaattt agcattatca
      241 gaaatggttt gcttggatac tagaggtata gattcaccct tgccagtcgt tgcatcagcg
      301 tcttctgaac aggaatgtag cgaacttgtc aatttagtac gtgatccgat tacaagagaa
      361 tgggaagagg attattacgg gcgttgggta tcaaatcaag accgtattaa tatcaatgtg
      421 aatatcgata ctattgattg ggtttccatt ggtctacttg ttttcatgtc tcctacaatc
      481 atcgcatatg gccgtattat gggggcctca tggaatgtga ttgtgagaaa taaataccga
      541 acgttgagag gtcaaaagac accgattgat ccagaccccc cttccattat gaagagagtg
      601 aatgcgacaa tattggttct gttccttggt acgatgccac tcgcggccat caatggaatc
      661 tcaacattgg tatggacgaa acttgagaat ccagataact tacgatatat cctagattta
      721 gggggaatag tcggaaattc tttgttgatg ttcgtggaag gaaatgaatt cctcaaaacc
      781 tgggttgatt tgaagagcct ctcctttgtt cttgctggat atttgatgtt gaacgtctcg
      841 gtagttgggc ttgctctaat cttcgaaatg attcgaaacc tcttcctcgg aggtcaagtg
      901 attggtggag tcggcggtgt cgttctcggt gctcctcgcg agattcgggc agaatcgata
      961 gtccaatctc gtattatcgc ttttggctta gctggatttg ctggatattc agtcttactt
     1021 cttatcatgc aagtatacaa ggaatgggca gaactgatgc catattctga ttcgataggt
     1081 ttcttgacag gtgaccaggt tgaactccta ctgcttgagg ggaaatggaa ttttattgca
     1141 gcaggtcagg gtattttcat cttgacatgg ttactatcca ttagtcgttg gcgaaccgtc
     1201 ggaatcacga agttcgatct tgcacctgaa gaacgtcgtt ccggtgctgt ccgaacaaat
     1261 gacggtaatt ggattcgtga ttatgtaatg caggctgctc gtcaagacga tcttggcgca
     1321 cttcgacgct tccaagataa tcccattgaa gcggatgaga gccttctcag attggagcgt
     1381 ggacgagcca agatgttcga atatgctatg agaggcctct ggccgaatgc tattgaggca
     1441 gcaaaaacca cacttgctca acaaggcggt aatgatgata atgcccggat gttaattgct
     1501 gttggacaca ttgcatcccg ccgtctagat gcatctaaga tggctctgaa agggctcttg
     1561 atggaagatg aagaagatga accagaacta atagaattca tttctgagtg gatggatcct
     1621 tgggcagata gggtcgatga agatgacctt tatgattggg agaatgaatc cacgattgac
     1681 cagatcaaag agctccagtc gaagattgaa tcatgggacc cagtgagtga gattggtcat
     1741 attcatcgta atcgacttgc tcacaatgcc ttgatttcct ctgtagccca acttcgagca
     1801 caaaggagaa tggatgaggc tctggatttg gctgtagggc ttgtccgtcg ctaccctaac
     1861 agttcgaagg cgagaatcgc ttgtgcactg tgtagcctag atctaggtaa ctggcatgac
     1921 gccttggaga ttttccggga tttgcagctg actggacccg aagatcctcg ggtaaaggca
     1981 ttgggctcta tcttgggact taaggctgat actgaagaat tcgaggttgc tttggctgtt
     2041 ggtacggttg ctgaaaagaa accatggtta gaccaagcac catgtaatcc attcattgga
     2101 ttagccatta aaggtggatt agatgaggcg ttgaacgcaa atgcattctc tatcgcccat
     2161 gaggctgtcg aacgtctaac agcgcccatc atctcaccca cattattaca gaacttcatt
     2221 cgttggggcc tacttccttt ggtttggctt tctttgggtg caattattct tcttgagact
     2281 ggggatacat ctgcagcagg attagttggt tttggtcttg tttctgccca tattgcggca
     2341 gtacgattta ggaatcaaac aagccatcag gtgcgccatc ggaatcaacc attgatggtc
     2401 aggatggctc gtcgattgaa gaaagagaag gtggtaggtg atctctcacg ttcccctgta
     2461 ggtaatcatc tactattatc tggaattctg cttgaagtcg gtggtgtaat tcttgatgtt
     2521 ggcttcccac tctggatggt tgagcgaagt aaatccgttc gttcgagaac gtggaaagta
     2581 ctcatgcatg aacggatggc ttctctgcgc aattccaaac tcccacgatg tgatccactc
     2641 cctaatcgat ggtggttacg ccggccaaga ccatacgagg atgatacacc tgctatggag
     2701 cgtctagtag gccctgtgca ttatcgtcca atgcggaagt tggaacctcc tgaacgtaat
     2761 gtccagatta aaggcccaac gtcacggaag gccaagaagc agcctaaagg aaatctgaat
     2821 gtcaagttcc gaggtagcgg tgtaatcggt gattcttgat gcctatcgtt ccaaacgaca
     2881 aggtagatac agaaatcgtt acacaaagca ataattgtca tcgttctgtt ggaggggatt
     2941 tgaagcttag agactctaat ccttgtgtgt ggtttcataa ctctgaattt atgtccatat
     3001 tcaatctgtt agaacagaat cttgcaagct cactatctag gaggttacta cattccattt
     3061 acgttcaccc tttctctgga ttctttgaag attgtatagt tcgtaagaag ccatttttaa
     3121 gttcagaaag ggcccatcta tctcggatgt tcgatacatg ggctcaatta cggatattga
     3181 ctggtcgagg catggcttct gtaatcgaat ggccatttag attccatgta gatcaaccag
     3241 ttcatccagg cgttgaggtg ggtgacatca tccgcatagt ggagcgattg actggattaa
     3301 gttggaaggc cacttggaaa gatgatggtg gtaggaattt gatgattcat ctcgagccta
     3361 ttgagatgcc aatcaaacca gagatatcta agcaaaagac aactggagta gagattgata
     3421 ttggagttga ctggattcaa ggtttacctc tagtcaacag ttcaccgatc gtgttcttga
     3481 catcagaatc gattgtcgaa tttatccgat tattgaatga ggtcccccct ccaggatgtc
     3541 ctgaaaaaga taaatttcct gatgcagaca gtaatctaga gaaattattg attgagttgg
     3601 tagggaaatc tatgaaacca caattgcccc ttattcttga ttgggatgaa gataatagtg
     3661 caatcatgaa acatctcact gatcgtggtt tcattcgaag ttatgcctca tctaacaacg
     3721 taattgagta tgaaagcata atgcctcgct cattcgtatg tgggccgatc gtttcagcat
     3781 gggaggcatc tactggcgag atagccattg ttaagatggc ttccagcggg cagaataagc
     3841 atacaatttc attccgaaat tagtattcaa taataggtgt gcaccctcgt tgaaaacagt
     3901 caactgcggt gaaacctttt atccgaagca aggatggata ggttggccca cctgtgggta
     3961 agtgatcata tgccgctcga ccataaccaa tgggcagtcg tcgcgattgt ctctaccctt
     4021 tgccttgcag gtgtatacac tgtcgttgat tctggaatat caactacgga aactggaggg
     4081 ttcgaacccg ctacaaatga tttgtcacct accgagattg atgtaacatt cactgaaggt
     4141 gaagacacag acggcgatgg aatttcagat cgaatggaac agactcttta cgggacagat
     4201 tggagaaata atgacactga tggtgatgat cttgaagatg gttgggagat tgctaatggt
     4261 ctcgatcctc tcgatgatgg tacagcgagt ggtgaggaga tagttggagg agatccagat
     4321 gctcagccgg acgatgataa caccgaacaa aatgaaacat ttcctgaccc gaataatggc
     4381 ccagatggtg accctgatcg cgatggactg actaaccgcg atgaggctaa tcttggtact
     4441 aatcctaacc ta
//
LOCUS       DUKB01000145            7979 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_257648, whole genome shotgun sequence.
ACCESSION   DUKB01000145 DUKB01000000
VERSION     DUKB01000145.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7979)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7979)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7979
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_257648"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            71..793
                     /locus_tag="HA345_04820"
     CDS             71..793
                     /locus_tag="HA345_04820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84712.1"
                     /translation="MAADRGDHLHVFRPNGRGIRRLRVGPMRALVGWLDREHLLMLDL
                     DGALRCVRLHGEHAQRRIEDRRWMWCSSLERGRLLLLDVEGALHEGVPNPFGWDELER
                     ISDGDIEPYRAVRCMDGWWTMNLEGRVRHALEENHLGFGDDIVDYISSDGAGSILTAT
                     KEGLLRWSIAPGISGIRAAGRRTQEEEERRRLDWLQRSTMFESAQQAEDEGLWSRALE
                     LYRALGRDEDVRRILGLQEGSD"
     gene            829..1080
                     /locus_tag="HA345_04825"
     CDS             829..1080
                     /locus_tag="HA345_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF357 domain-containing protein"
                     /protein_id="HIH84713.1"
                     /translation="MNITDAARTKATPLVVPGSDEERRLNDMLRMCDDYRKDAAHFLE
                     AGDLVRAFGAVYYAHAWVDAGVRIGWLDGHGDDELFTLP"
     gene            complement(1081..1440)
                     /locus_tag="HA345_04830"
     CDS             complement(1081..1440)
                     /locus_tag="HA345_04830"
                     /inference="COORDINATES: protein motif:HMM:NF037434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84714.1"
                     /translation="MPDLLIDACGWVAVVDARINIDLEIERTIGPANWILPAQAKEEI
                     ERLAKARNDLLLDLLTTRVTVIDSEDGHTDDVLVHLAQRLEAPVLTVDKNLKRRLTAV
                     GCAYLEVVRDRSLRLVD"
     gene            complement(1445..2683)
                     /locus_tag="HA345_04835"
     CDS             complement(1445..2683)
                     /locus_tag="HA345_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004591834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HIH84715.1"
                     /translation="MSVLPRQPEVNIGLVGHVDHGKTTLTRALSGTWTDTHSEERKRG
                     ISIKLGYADTAFYRTDDGQHYAMGKRPDGGKDEPKELQRTISFVDAPGHETLMAVMIS
                     GASIMDGALLLIAANEACPQPQTREHLAALQIAGIENIVIVHNKIDLVSRERAMESHQ
                     EINDFVKGTIADGAPIIPVSAHHDVNLDILIEAIEDRIQTPDRTGEKEGVMQIARSFD
                     INRPGARPSQLKGGIIGGSIIQGTFAVDDEVVIAPGRRITKGSKQSWEPIETRIISMK
                     GGGKDLDEMHAGGLCGIATPLDPTMTKADNLTGQVMAKKGEMPPVWDSLNLDLTLLER
                     MVAGDEESADIVKPLALGEMLMINASTATSVGTVTKVSKGKTTLTLRLPICADITSRV
                     TLSRRIDSRWRLIGHGTISG"
     gene            complement(2702..3193)
                     /locus_tag="HA345_04840"
     CDS             complement(2702..3193)
                     /locus_tag="HA345_04840"
                     /inference="COORDINATES: protein motif:HMM:NF013273.1"
                     /note="the function of this ribosomal subunit is unknown;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6e"
                     /protein_id="HIH84716.1"
                     /translation="MSDRVFKAVVNDSKTQMKRENAKGDKRTYSPSYQTEVSGNNYNA
                     LLGKKIGDDVSGINIHDDMNGYTLRITGGSDKTGTPMRSDLHGAGVNAVLVGPGTGYK
                     GKRYVRKNGKVYRYKYDGIRRRRNLRGNTISVDTRQINLTVVEKGARALGDIFGAGES
                     SDE"
     gene            complement(3258..4442)
                     /locus_tag="HA345_04845"
     CDS             complement(3258..4442)
                     /locus_tag="HA345_04845"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84717.1"
                     /translation="MADYLDRIGAGKILLDPNPLSFDWIPQELVARNEQLGELASMFI
                     GIDTSQSSGRAIVTGPVGSGKTVLVRRFSEDLMRHLDGRRRIQPVHINCRNHPTTSQV
                     LQRIAHQLDHGHPERGFSPGEIIQSIRRNLISSERHMVLVLDEVSVLLLREGDDLLYQ
                     LLRIDEGRNESGTLSLILVSQEPIVHLFEAAVKSRFGQSNRIRLEHYGEEGLREIVLQ
                     RTTASCRPGSVPEEAISRISGYAASTGDARHAIELLQSSIRRAEQRGGNEITIEDIQP
                     SSRLSSSIEPDMVDGLTDQQKMALLALCRRLRRAETVTSGDAEKLYHVVCEEFGKERR
                     GHTSFWGYIKRLEEIGFVSTQTGNALQGRGRTTLIRAVNILPATIEKRLEQELNRSVK
                     GD"
     gene            4519..6012
                     /locus_tag="HA345_04850"
     CDS             4519..6012
                     /locus_tag="HA345_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HIH84718.1"
                     /translation="MATLAEHYARAFGADRFFGLDMVINWIALVIIVWIIGLSYLVWK
                     SDSTNIQNRFISTLLLFEGLKGLWQASNILPYSFEFQEIWNGLWILKIDVFMIANITA
                     VILYFLFPVYFRINALKFMFNEKIQKFAWWIAPIIGIITWILIKDTPPFILENASWLS
                     CSAVGAEPVLHVWYGQVTAEAENIRSSIGTCPAVFDSLVSDQRVALWFLTLIGTPVSI
                     IALIFIRITLKQGNLDGDNYLIPPTFYTGFLGKVIANTIFFSTILIFMPLINGGPAGF
                     LAVLEWRYVDRSAMANVKYFIWTLNLGLPIVAVGFEAMMFVYASTKDTVLGIDERLRK
                     TFTNTIFTGVGAISFIAASEIMENVLGFGLVGGVVLGVGLFAVRKPVIGILDGFSNRL
                     IPSEYSAEEMEYLELFSKSMKDNQVTENERILLKTLATAYGITDVRVMEIENSFNEIN
                     SQLSDELVVENDVSVTQQWTDDSGYTWRKMSDDTIQWWNGNTWDDYR"
     gene            6059..>6888
                     /locus_tag="HA345_04855"
     CDS             6059..>6888
                     /locus_tag="HA345_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84719.1"
                     /translation="MTTISEYYLAQFSAEGTYGLGSIFPGWLAVFILFWMLTLSVLVW
                     KAAPKEMDNRFIAVLLIAEGFKAAYMLPSIFPESPDWWWLYEYTMHFRGALFQTAHIV
                     AILMYFCFPIYFRVNRLSFLYKPSLQRHAWYLPALLTVVYMGVQVYQQNPAHVAQNLA
                     YIQCNSIGSAPTALVVIGTETAVMTDMLQSIGTCEAELWFLLGNGGEFGWAAIALSFL
                     VSIFALFIMRASMKQYASGSNQNASQSLTSRSLYIGFLGKVLGTTFFFLMIFFITPIL
                     "
     assembly_gap    6889..7193
                     /estimated_length=305
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            7309..7812
                     /locus_tag="HA345_04860"
     CDS             7309..7812
                     /locus_tag="HA345_04860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84720.1"
                     /translation="MLNGYLISLPIAFEALMFVHASMKDTVLGIDQRLRKTFGTAILT
                     GLGAVLFLIGSEAVEGLLPLPGMLGGVLLGGTILAVRKPIMNIVDGFSTNLLPSAYTD
                     SEIAYLEAYTTAMEDNIVTSQERSMLVTLANSLKISEQRAIEIETFLNTQRTDESPSK
                     EDGEVLA"
BASE COUNT         1806 a         1704 c         1924 g         2240 t
ORIGIN      
        1 cccgctcagt gatggaagaa gtattcctgg tggatatcgg caggttcttt ctaggccagg
       61 tggaggttgg gtggctgccg atcgaggcga tcatctccac gtcttccggc caaacggtcg
      121 tggcatacgt cgtctcaggg tagggcccat gcgtgctttg gtcggatggt tagaccgaga
      181 acaccttctc atgcttgatc tcgatggagc attacgttgc gttcgtttgc atggagagca
      241 tgcacagcga cgtatcgaag atcgtcgttg gatgtggtgc agttctctgg aacgaggtcg
      301 gcttcttctt ctcgatgtcg aaggtgcgtt acatgagggt gtaccgaatc cctttggatg
      361 ggatgagctt gagcgtatct ctgatggtga tattgagcca tatcgggctg ttcgttgcat
      421 ggacggatgg tggacgatga atcttgaagg gcgagtccgg catgcattgg aagagaatca
      481 ccttggattt ggtgatgaca tagtcgatta catctcatcg gacggagcag gtagtatact
      541 gactgctacg aaggagggtt tgctccgttg gagtatagcg ccgggtatca gtggtatcag
      601 agcagcaggt cgccgtacac aggaagagga ggaacggcgc cgtttagatt ggcttcagcg
      661 atccacgatg tttgaatccg cacaacaggc ggaggacgaa ggtttgtggt cacgggcatt
      721 ggaactctat agggcactgg gtagagatga ggatgtgcgc aggattctcg gacttcagga
      781 ggggagtgat tgatggaggc gttgactgtt gagcgtgttc aagaagcaat gaacatcact
      841 gatgcggcac gaacgaaggc gacaccactt gtcgtacctg gaagtgatga agagagacgt
      901 ctgaatgata tgctgcggat gtgtgacgat tatcgtaaag atgccgccca ttttcttgag
      961 gctggagatc ttgttcgtgc ttttggtgca gtatactatg ctcatgcttg ggtggacgca
     1021 ggcgtgagaa tcggatggtt ggatggccat ggcgacgacg aattattcac tctgccataa
     1081 tcagtccact agtcgcaggc tccggtcacg tactacttcg agataagcgc atccaacagc
     1141 ggtaagtcgg cgttttagat tcttatctac cgtcagtacg ggcgcctcta ggcgttgtgc
     1201 aagatggact aggacatcat cagtatgccc gtcttcacta tcgataactg tgaccctagt
     1261 agtgagtaga tctaggagta gatcgttgcg cgcttttgct aatcgttcaa tctcttcttt
     1321 cgcttgtgca ggtagaatcc agttcgctgg accaatagtt cgttctattt cgagatcgat
     1381 attgatacgc gcatcgacga cagcaaccca gccgcaggca tcgatcagga ggtcgggcac
     1441 gggctcaccc gctgatagtg ccatgtccga tgagtcgcca tctagaatca atacgtcgag
     1501 aaagtgtaac gcggcttgtg atgtctgcac agattggtag ccgtagcgtc aatgtggtct
     1561 tgcctttgga gaccttggtc acggtaccaa cagatgtggc tgttgaagcg ttaatcatga
     1621 gcatctcacc aagggcaaga ggcttgacga tgtcagcgct ttcttcgtca cctgcaacca
     1681 ttctctcaag tagggtgagg tcgagattga gtgaatccca tacaggaggc atttctccct
     1741 tctttgccat tacctgtcca gttagattgt ctgcctttgt catggtgggg tcgagaggtg
     1801 tagcgatacc gcagagacca cctgcgtgca tctcatcaag gtccttacct cctcctttca
     1861 ttgaaatgat tcttgtctct atgggctccc atgactgctt agatcccttc gttattcttc
     1921 gacctggagc aatgacaact tcgtcatcca cagcaaatgt tccttggata atcgaaccac
     1981 ctatgatgcc tcctttgagt tggctcggcc gagctcctgg tcgattgatg tcgaaggatc
     2041 gggcgatttg cataacacct tctttttctc ctgtacgatc aggtgtttga attcggtcct
     2101 cgatggcctc gatgaggata tcgagattca catcatggtg agcagatacg gggataatcg
     2161 gcgccccatc tgcgatagtg cctttgacga agtcattgat ttcctgatgt gattccatcg
     2221 cacgctctcg gctaacaagg tcaatcttgt tgtggacgat tactatgttc tcgatacctg
     2281 caatttgtag ggctgcgagg tgttcacgag tttgtggctg cgggcatgct tcgttggctg
     2341 cgattaggag cagagccccg tccataatcg atgctccaga aatcatgact gccatcaggg
     2401 tctcgtgacc cggggcatca acgaatgaga tggttctctg cagctcctta ggctcatcct
     2461 ttcctccatc tgggcgcttg cccattgcat agtgctggcc gtcatcggtc cgatagaatg
     2521 cggtgtcggc atatccaagc ttaatcgaga tgccacgttt cctctcttcg gaatgagtat
     2581 ccgtccatgt acccgaaagt gcccgggtca gcgttgtttt tccatggtcg acatgtccaa
     2641 caagcccgat attgacctct ggttgacgag gtagcacgga cagacttcat ccactccaag
     2701 ttcactcgtc gctggattcg ccggcgccga agatgtcgcc gagggcgcga gcacccttct
     2761 ctacgactgt gagattaatt tggcgagtgt ccacggaaat cgtgttccct cgtaggtttc
     2821 tacggcggcg gattccgtcg tatttgtagc ggtagacctt cccgttcttg cgaacgtaac
     2881 gcttcccttt gtagccagtt cctgggccga caaggactgc gttaacacct gcgccatgga
     2941 gatctgatcg cattggagtt ccagtcttgt cactgccgcc ggtaatccgg agggtgtaac
     3001 cgttcatgtc gtcatggatg ttgatgccgg atacatcgtc cccaatcttc ttcccaagga
     3061 gcgcgttgta gttgttcccc gagacctcag tttggtatga cggagagtaa gttcgcttgt
     3121 ctcctttcgc gttctcacgc ttcatttggg tcttggagtc attgacaacg gccttgaaga
     3181 ctcggtccga cattgtactc accgcaactc gccgacaatt ggcccctata agagcggttc
     3241 gctacattcg tagatgctca atcacccttt acactccgat ttagttcctg ttccaaccgt
     3301 ttctcgatgg tcgcaggaag gatgtttaca gccctgatta atgtggttcg accgcgcccc
     3361 tgtagagcgt ttcctgtctg tgttgaaaca aaaccaattt cctcaagtcg cttgatatat
     3421 ccccagaagg aagtgtgtcc tcttctctcc ttaccgaact cttcgcatac aacgtggtag
     3481 agtttctccg catcgccact agttactgtc tcggcccgac gcaggcggcg acatagggcg
     3541 agtaaggcca tcttctgttg atcggtgagt ccatcgacca tatctggttc gatactagat
     3601 gatagacgag aactgggttg aatgtcctcg atagttatct cgttccctcc tctctgctct
     3661 gctcttctga tggaactttg gagcaattcg atagcatggc gggcatctcc agtactcgct
     3721 gcgtagccag aaatccgaga tattgcctcc tcaggaacac tgcctgggcg acaggaagca
     3781 gtagtcctct gcaagacaat ttcacgaaga ccctcctcgc catagtgttc gagacgaatg
     3841 cgattgctct gaccgaatct cgacttcact gcagcctcaa agagatgtac aatcggttct
     3901 tgactcacaa gaatcagaga taatgtgcct gattcgttgc gtccttcatc gattcggagt
     3961 aactgataga ggagatcatc tccctctctt aacaggagta cactgacttc gtcaaggaca
     4021 agtaccatgt gacgttccga gctgatgagg ttcctcctga tgctctggat aatctcaccg
     4081 gggctgaatc ctcgttcagg atgcccgtgg tctaattgat gggcgattcg ttgtaggact
     4141 tgagaagtcg tggggtggtt tcgacagttt atgtggactg gttggattcg ccttcggcca
     4201 tctaggtgcc tcattaggtc ctctgagaat cggcgcacaa gtacggtttt accgcttcct
     4261 acggggccgg tgactatcgc acgcccacta gattgtgatg tatcaattcc aatgaacata
     4321 gaggcaagtt cacctagttg ctcgttccgg gccaccaatt cttggggaat ccagtcaaac
     4381 gatagagggt tagggtcgag cagaatctta cctgctccaa ttcggtctag atagtccgcc
     4441 attcagggtg aggttctgct cagccgttct tagagatatt gagggcgaaa ttaaatcctg
     4501 attattcgtg gaaaaaatat ggcgactctt gctgaacact atgcaagagc atttggcgcg
     4561 gatcgttttt ttggattaga catggtcata aattggattg cgttagtgat tattgtatgg
     4621 attattggcc tttcatattt agtgtggaaa tctgattcaa caaatattca aaatcgattc
     4681 ataagtactt tgttgctttt cgagggtctc aagggacttt ggcaggcctc taatatcctt
     4741 ccttattcat tcgagtttca agaaatatgg aatgggttat ggattctaaa aattgatgtt
     4801 tttatgattg caaacattac cgcagttatt ctttatttct tattccctgt atattttaga
     4861 ataaacgcgt tgaaatttat gttcaatgaa aaaatccaaa aatttgcatg gtggattgca
     4921 cctattatcg gaataataac ttggatttta atcaaggaca cccccccatt tatcctagag
     4981 aatgcatcat ggctaagttg ttcagcagtg ggtgctgaac ctgttttgca tgtgtggtat
     5041 ggtcaagtta ctgctgaagc agaaaatatt cgaagttcaa taggaacctg tccagctgta
     5101 tttgatagcc ttgttagtga tcaaagagtt gccctttggt tccttactct tattgggacg
     5161 ccggtatcta ttattgctct tatttttatt aggattacac tcaaacaagg taatctagat
     5221 ggtgataatt atctaatccc gccgacattt tacacgggtt tcttgggtaa ggttattgcg
     5281 aatacaattt tcttctcaac aatactcata ttcatgcctt tgattaatgg gggacctgca
     5341 ggattcttgg ctgttttaga atggagatat gttgatcggt cggccatggc gaatgtaaaa
     5401 tatttcattt ggactctgaa tttaggactc cccattgttg ctgttggttt cgaagctatg
     5461 atgtttgtat atgcatcaac aaaagataca gttctcggta tagatgaaag attaagaaag
     5521 acatttacaa atacaatttt cactggtgtt ggtgctattt catttattgc tgctagtgaa
     5581 ataatggaaa atgtgcttgg atttggattg gttggtggtg tagtattggg tgttggtttg
     5641 tttgcggtaa gaaagccggt aatcggaatt ctggatggat tttctaatcg tctgattcct
     5701 tccgaatata gtgctgaaga aatggaatat ttggaattat tttctaaatc aatgaaagat
     5761 aatcaagtca ctgagaatga aagaatactg ttgaagacct tggccacagc atatggaatc
     5821 acagatgtta gagtgatgga aattgagaat tctttcaatg aaatcaactc acaattatct
     5881 gatgaattag ttgtggaaaa tgatgtttct gtaactcaac aatggactga tgattcaggt
     5941 tatacttgga ggaagatgag tgatgataca attcaatggt ggaatggtaa tacttgggat
     6001 gattaccgtt gaattttaac taattgattt tagatggcgg aattctaagg tgaactaaat
     6061 gacaactatc tcagagtatt acttggctca attcagtgct gagggtacct atggtcttgg
     6121 gagtatcttt ccaggatggc ttgctgtttt catcctgttt tggatgttga ctctgagcgt
     6181 cctagtgtgg aaggctgcac ccaaagaaat ggataatcgc ttcattgccg ttcttctgat
     6241 tgcagagggt ttcaaggcag cctacatgct accctcgata ttccctgagt cgccggattg
     6301 gtggtggctc tacgagtaca caatgcactt taggggtgct ttgtttcaga cagctcatat
     6361 tgttgcaatt ctgatgtatt tctgtttccc aatatacttc cgagtcaacc ggttaagttt
     6421 cttgtataaa ccaagcctac aacggcatgc atggtatctt ccagcacttc ttactgtagt
     6481 gtatatgggg gttcaggtat accaacaaaa ccctgcccat gttgctcaga acttggctta
     6541 catacaatgc aattctatcg gatcagcacc taccgcatta gttgtaattg gaactgaaac
     6601 agcagtgatg actgatatgc ttcaatcgat tggaacatgt gaagcagaat tgtggttcct
     6661 attggggaat ggcggtgaat ttggatgggc cgcaattgcc ttatccttcc tagtatccat
     6721 atttgccctc tttatcatgc gtgcatcgat gaagcaatat gcaagtggca gcaatcaaaa
     6781 tgctagccag agtcttacat cgaggtcact atacattggt ttccttggga aggtattggg
     6841 gaccacattc ttcttcttga tgatcttctt catcacccca atcctcaann nnnnnnnnnn
     6901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnncttcttc
     7201 atcaccccaa tcctcaatcc agtttctgga gtagacattt ttgttgatca agcattagtg
     7261 aaattacaaa ctccaacgtt tcaaggtaag ctattccttt actcgatgat gttgaatgga
     7321 tatcttattt ccctccccat cgcatttgag gcgctaatgt ttgtccatgc ttcgatgaag
     7381 gacaccgttc tagggataga tcagcgtctc aggaagacct ttgggaccgc tatcttgact
     7441 ggtcttggtg ccgttctttt cctaattgga agcgaggccg tggaaggact actgcctctc
     7501 ccagggatgc ttggaggcgt gctgcttgga ggcacaatcc tcgccgtgag gaagccaatc
     7561 atgaacatag tcgacggttt ctccacaaac ctccttccgt cagcgtatac cgattctgag
     7621 attgcctacc ttgaagcata tactacggcg atggaggaca atatcgtcac gagtcaggag
     7681 aggtccatgc ttgtcacact cgccaattcg ttgaagatta gtgagcaacg agctattgag
     7741 attgagacat tcctgaatac tcaacgtaca gatgaatccc cctccaaaga agacggagag
     7801 gtattggcct agaatgtggg atacactctt ctgtctcgca tttgctcttc tcctgttctt
     7861 ctggctcgct gcaagaagcg tctcctctga aacgtcaggg tcatctgtcc ataattcgtt
     7921 tacatccgcc ggttcaaacg aaggtggagg attatcactc gaccccatgg acattgaag
//
LOCUS       DUKB01000146            3913 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_122268, whole genome shotgun sequence.
ACCESSION   DUKB01000146 DUKB01000000
VERSION     DUKB01000146.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3913)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3913)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3913
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_122268"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            31..528
                     /locus_tag="HA345_04865"
     CDS             31..528
                     /locus_tag="HA345_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84721.1"
                     /translation="MEQLRESIGGMTSEKSTAPIVFHRRIIGGGIHDGDEVIDYQYWI
                     RDLPVHFIHTKESAIEATDGVWDMPMQIAMFDGVLTGSTTTAAEAVIHGMPTFLISKA
                     ERGFLDELESRSPDLLFRWRSTSSDGFDRTTHDWIEAMQRDRRTSQIRKDSLAFFERE
                     LGPVA"
     gene            complement(529..966)
                     /locus_tag="HA345_04870"
     CDS             complement(529..966)
                     /locus_tag="HA345_04870"
                     /inference="COORDINATES: protein motif:HMM:NF012514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HIH84722.1"
                     /translation="MTERCETCGNDTWPKPSLAVDAIATRNGKNGMEVLLIRRGNDPW
                     KGAWAFPGGFVDEGEDPKDAVLRELLEETGIIGEAPCIHTVRGNPNRDPRKHIVSIFY
                     RVDVDPESTPIGGDDAAYADWVEADVVINEGMAGDHLEVLLGL"
     gene            complement(971..1840)
                     /gene="uppS"
                     /locus_tag="HA345_04875"
     CDS             complement(971..1840)
                     /gene="uppS"
                     /locus_tag="HA345_04875"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018034969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HIH84723.1"
                     /translation="MGWLGRIIDRTAKLLLSFSIIRAPARWLANSRFAWSFVSRTDRV
                     RANRLRDRVKRGEIPQHVSIIMDGNRRFAEKEGIESSTGHRYGKKKLEEVMDWVLDLD
                     IPYLTVYALSTENVISRTGAELEVLFDLYVEGLRELLENERIYSNRVQVRIAGHKELL
                     PSRVLAAIEAAEKGTADHDGCVFTICLAYGSREEILKAVRSIAKDHAAGEISLEQIDQ
                     ASISDRLYTAGLPDPDLIIRTSGEERISNFLLWQAAYSELYFTDVFWPSFSKADFYTA
                     IESYQNRRRRFGS"
     gene            complement(1901..2440)
                     /locus_tag="HA345_04880"
     CDS             complement(1901..2440)
                     /locus_tag="HA345_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84724.1"
                     /translation="MTQDPLPLAVDLDGTVILSDMTKISARRIILRRPWYILLIPLFE
                     VTKGRPYWKKRVANFISIDPKTLVYHEAFVNWLKEQKATGREIILATASHIVQAHPIA
                     EYVGLFDDVMGSEGAVNLGGKHKAKALVERYGEGGFAYCGNSKADLEVWPDAGEIIVV
                     NPSRGVLSGLHRDPDILFE"
     gene            2532..3818
                     /locus_tag="HA345_04885"
     CDS             2532..3818
                     /locus_tag="HA345_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84725.1"
                     /translation="MEFPDVAGEPWFPRGAVSTNPVPAEHAPVGFSSFEVPLPWTTTV
                     MLWPNAGLPNLEELQIWSESENLWGDATCLRSATSLDWASGSLGPIGKMDCGRDGIWR
                     IEILPFDYDGHGRRLSEHIGSNPYVAQGGLQWRGRDVLLFWRDLGAWPSAADVLESLI
                     ESEELDDARILIEECGRALGRFHLSTVEVADPTKVAKRWNERLKVLEERTKSSTLWRA
                     PHGRRTVGTLTHRNFSLRNIVVLNDIHSKPNLEDVHILFPGDGVYGALIPLEHRAPAL
                     QDLAAGYRSIERIEGGTSGMRIELRRCFLDGWRSTAPPRWVSDDALDSHKGGVPIWEY
                     EQVLKEVLYAHAFDDEIDSRTHWFLNHVDRIQAGMFRARTIAAGALTCTALLGFGIYA
                     GVTELLEWSDAIPLMLCGLAVPPLRQLYRNLAPPPY"
BASE COUNT          926 a          944 c          987 g         1056 t
ORIGIN      
        1 gaacagggga tttcgatgag gaatcaggca gtggaacaat tgcgtgaatc tattggagga
       61 atgacaagtg agaaatccac tgctccgata gtattccatc gaagaatcat tggtggaggg
      121 attcatgatg gagacgaagt aatcgattat caatattgga ttagggactt accagtccac
      181 ttcattcaca caaaggaatc tgcgattgaa gcaacagatg gtgtgtggga tatgcctatg
      241 cagattgcta tgttcgacgg agttctcaca ggttccacta cgacggcagc agaagcagtc
      301 attcatggca tgcccacgtt cctcatttcc aaggctgagc gaggtttcct cgatgagttg
      361 gaaagccgca gtcctgattt gctgttccgt tggcgaagta catcgtcaga tggattcgat
      421 agaacaactc acgattggat tgaagcgatg caaagagatc gtcgtacctc tcagattagg
      481 aaggatagcc ttgccttctt cgaaagagaa ctcggtcccg ttgcttgatc aaaggccgag
      541 tagaacctca agatgatcgc ctgccatacc ttcgttgatg acaacatctg cctccaccca
      601 atctgcataa gcggcatcgt ctccaccaat gggcgttgat tctgggtcaa catcaacacg
      661 atagaaaatc gaaactatgt gcttacgtgg gtcccgattg gggtttcctc gaaccgtgtg
      721 gatgcaagga gcctccccga taattcctgt ttcttctaga agctccctca gaacagcatc
      781 cttcgggtct tcaccttcgt ctacgaaccc accaggaaag gcccatgcac ctttccaagg
      841 gtcattgccc cgtctaatca gaaggacttc cattccgttc ttaccattcc gagtcgcgat
      901 agcatccacc gctagagagg gttttggcca agtgtcattg ccacatgttt cgcagcgttc
      961 cgtcattgaa tcaacttcca aatcgtcgtc ttcgattttg ataggattcg atagcagtat
     1021 agaagtcggc tttggagaat gatggccaga atacatcggt gaaatagagt tcggaatatg
     1081 ctgcttgcca gagtaggaaa ttggagattc tttcctcccc agaggttcgt atgatgagat
     1141 ccggatcagg tagccctgcg gtgtaaagtc ggtctgagat tgaggcttga tcgatttgtt
     1201 ccagggaaat ttcccctgct gcgtgatctt tagcgatgct acgaacagcc ttcagaatct
     1261 cttcacgtga accgtaagca agacagattg tgaacacaca tccgtcgtga tctgcagttc
     1321 ccttttctgc tgcttcaatt gctgctagaa ctcgtgatgg taacagttcc ttgtgacctg
     1381 cgatacggac ttgtacacga tttgagtaaa ttctctcgtt ttcaagaagt tctcgtagcc
     1441 cttcgacgta gagatcgaac aagacctcaa gctctgcccc agttcgactg attacgttct
     1501 ccgtacttag tgcatataca gtgagatagg ggatatcaag gtcgaggacc cagtccatca
     1561 cctcctccag ttttttcttg ccatagcggt ggcctgttga ggattcaata ccttcctttt
     1621 ccgcgaatct tcggttacca tccatgatga tcgaaacatg ctgggggatc tctcctcttt
     1681 tgacacggtc tcgaaggcgg tttgcccgga cacgatcggt tcgagatacg aagctccaag
     1741 cgaatcttga gttcgctaac caccgcgcag gtgcccgtat gatgctgaag gagagcagca
     1801 acttcgcagt tctatcgatg attctaccga gccagcccat gtactccccc cttcatgaga
     1861 ggcgcgtttg ggatttcatt cctcgcgctg atacgtggat ttactcaaac agaatgtctg
     1921 gatccctgtg gagccctgaa aggaccccac gacttggatt tacaacgata atttctccag
     1981 catccggcca tacctcaagg tcggcttttg agttcccgca ataggcaaat ccaccttcac
     2041 cgtagcgttc aaccaatgcc tttgccttgt gtttacctcc gagattgaca gccccctcag
     2101 accccattac atcgtcgaat agtccgacat attcggcgat cggatgtgct tgcacgatat
     2161 gcgacgctgt ggcgagaatg atttcccgtc cagtcgcttt ctgttccttt agccagttta
     2221 cgaatgcctc gtggtagacg agtgttttag ggtcgattga aatgaaatta gcaactcgtt
     2281 tcttccagta aggtcgcccc ttggtgacct caaagagtgg aatcagtagg atgtaccatg
     2341 gacgtctgag tataattcgc ctagcactaa tcttcgtcat atccgatagg ataaccgtcc
     2401 catctaggtc gacagccaga ggcaatgggt cctgcgtcat tgtatcggcg tgaagcaggt
     2461 gttgaacaat ccttccgctc tacagagatt cagaccggtc gtctcaagga ttgagacgct
     2521 ctcctcgggc tatggagttc ccggatgtcg ctggtgaacc ttggttcccg cgaggggcgg
     2581 tctcaactaa tccagtccct gctgagcatg cacccgttgg attctcctcg tttgaagtcc
     2641 ctcttccttg gacaactacc gtgatgcttt ggccgaatgc aggacttcct aatctagaag
     2701 agttgcaaat ctggtctgaa tcagaaaatc tctggggtga cgcgacatgt ttgcgatctg
     2761 caacgtcact tgattgggcc tcaggttcgc ttggtcctat agggaagatg gattgtggtc
     2821 gtgatggaat ttggcggatt gagattctcc ccttcgatta tgatggtcat ggacgtaggt
     2881 tgtctgaaca tatcggcagt aatccatatg tcgcacaagg gggcctccaa tggagaggtc
     2941 gagacgtcct cctcttttgg cgggatttgg gcgcgtggcc ttccgcggca gatgtacttg
     3001 aatcacttat tgaatccgag gaattggatg atgcgagaat cctgattgaa gaatgtggac
     3061 gtgcccttgg acgctttcat ttatccactg tagaagtggc agatcctacg aaagttgcga
     3121 agcgatggaa tgagcgatta aaggtccttg aggaacgaac gaagtcatcc acactatggc
     3181 gtgctcctca tggccgtcgt acagttggaa ctctaacgca tcgtaatttc agcctgcgaa
     3241 acatcgtagt actcaacgat atacattcta aaccgaatct agaagacgtg cacattctgt
     3301 ttccagggga tggcgtatat ggggcattga taccacttga gcatcgtgcg ccagcgttac
     3361 aggatttggc tgcaggatac cgttcgattg aacggattga aggcggaaca tctggaatgc
     3421 gtatcgaact tagacgttgt ttccttgacg gttggaggtc cacagctcca cctaggtggg
     3481 tatcggatga cgccttggat tcacacaagg gcggagtccc aatttgggag tatgaacagg
     3541 tcctcaaaga ggtgctttat gcgcatgcat ttgacgatga aatagattca cgaactcatt
     3601 ggttcctaaa tcacgtcgat aggattcagg cgggtatgtt tcgtgcccgc actattgctg
     3661 caggtgcctt gacctgcact gccttacttg gattcggaat ttatgcaggg gtgacggagt
     3721 tactcgagtg gagcgatgca atcccactga tgttgtgtgg tctcgcagtt ccaccgttac
     3781 gtcaattata ccgtaatctc gccccgccgc cgtactgatt attctgagtt attgacagtg
     3841 ttgattgtgt aatctaggac taggatttca acaatgtagg agacctcttc tccttcgtca
     3901 ttgtgattgc atc
//
LOCUS       DUKB01000147            2914 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_329118, whole genome shotgun sequence.
ACCESSION   DUKB01000147 DUKB01000000
VERSION     DUKB01000147.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_329118"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="HA345_04890"
     CDS             <1..186
                     /locus_tag="HA345_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012901724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HIH84726.1"
                     /translation="PDAMWGDPTKAIGGHIVGHASTFRIYLRKSKGGRRVARLIDSPN
                     LPEGDAVISVVEDGIRD"
     gene            complement(188..1873)
                     /locus_tag="HA345_04895"
     CDS             complement(188..1873)
                     /locus_tag="HA345_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006982454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HIH84727.1"
                     /translation="MTFVPDTLDATNWESLQPLYEDLVQRSVDTVTGLEELIRDESEL
                     REWVSEAGSRLYVAMTCSTDDEVKKEAYLDFVENTEPKLSEIGDRLNRRIMSSPVINE
                     LDPSTYGVMIRDIEADIRIFREENISLYTELTKLGQKYEEISGSMTVQFQGEERTMQQ
                     MGKFLQVTNRDTREEAYRAVWARRLKDSEIIENLYDQMLAIRHQIALNAGFENYRDYA
                     FVAKHRFDYTPTDCEDFHRAAEKICVPLSRTLDAQRKELLAVNSLRPWDLGVDVHGRD
                     PLRPFEEVDQMVAGTSRMFHRISNELGTMFDSLRDGESLDLDSRKGKAPGGYQISFDR
                     IRRPFIFMNATGLQRDLETMVHEAGHAFHAMYSSKQELIDNRSPPIEFAEVASMSMEL
                     LVHPHLDEFYSQDDADRARRVHLEGVVGLLPWIATIDAFQHWTHTHPSHSREERAEAW
                     RDLRKRFGANVDWSGMEEMRDIGWHRQLHLFTYPFYYIEYGIAQLGALQIWLQSLDSL
                     DGALQNYARAMELGGKLPLPALFEAAELTFSFGPETVKELIDAVQTRLADLPA"
     gene            complement(2213..2773)
                     /locus_tag="HA345_04900"
     CDS             complement(2213..2773)
                     /locus_tag="HA345_04900"
                     /inference="COORDINATES: protein motif:HMM:NF020201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84728.1"
                     /translation="MEPGDVPWFPAWGVDLDEPINDVGVLISDWIERRPSDRWALIAG
                     PIPSSDRHLWASWHVATRNEERDSMVARTIDAEFIRILAGTHQIRLAFDRIGPREGDD
                     HVWIVYLPRTTGIDSNGLLEGYPAHDPAIEQMASDLMPWLNGDLRTARPVPNREGADR
                     LEIPSSEPISGIESSMIMMAASADIR"
BASE COUNT          693 a          714 c          694 g          813 t
ORIGIN      
        1 cctgatgcaa tgtggggaga tccaactaaa gcgattggtg gccatattgt gggtcacgcc
       61 agtactttca gaatctacct ccggaagtcg aagggcggac gccgtgtcgc acgtctgatt
      121 gacagcccta atcttcccga aggtgacgca gtcatcagcg tggttgaaga tggaattcgt
      181 gactgaatca agctggaaga tctgctagac gggtctgaac tgcatcaatt agttccttca
      241 ctgtctctgg accgaaggag aatgtaagtt ctgcagcctc aaatagggcg ggcagtggaa
      301 gtttccctcc aagttccata gctcgtgcat agttctgtaa tgcaccatcg agggaatcca
      361 acgattgaag ccaaatctgt agggcgccga gttgagcaat tccatactcg atgtaataga
      421 aggggtaggt gaagaggtgg agttgtctat gccatccgat atctctcatt tcctccatgc
      481 cgctccaatc tacattggct ccgaagcgtt ttcttagatc tctccaagct tcagcccgtt
      541 cttctcgtga atggcttgga tgtgtgtgcg tccaatgttg gaaagcgtcg atggtggcaa
      601 tccaaggaag tagtccgacg acaccttcga ggtggacacg tcgtgctcgg tccgcatcgt
      661 cttgagaata gaactcatct agatgagggt gtacaagaag ttccatcgac atcgaagcga
      721 cctcagcaaa ttcaattggt gggctacgat tgtcgattag ttcttgttta ctggaataca
      781 ttgcatggaa ggcatgaccc gcttcatgca ccatcgtttc gaggtctctc tgcaatccag
      841 tggcgttcat gaaaatgaat ggacgtcgaa ttcgatcaaa actgatttgg tatcctcctg
      901 gggccttccc ttttcgactg tctaaatcca aggattcccc gtctcggagg ctatcaaaca
      961 tcgttccgag ttcattgcta atacggtgga acattcggga tgtacccgct accatctgat
     1021 cgacttcttc aaacgggcga agcggatcac gaccatggac atctactcca agatcccatg
     1081 gacgtagtga attgactgct aggagttcct tcctctgtgc atcaagtgtt cttgacaatg
     1141 gaacacagat tttttctgca gctcgatgga aatcctcaca atccgtggga gtgtaatcaa
     1201 atcggtgttt ggctacaaag gcatagtcac ggtagttctc gaaccccgca tttaatgcga
     1261 tttgatgacg aattgctaac atttggtcat acagattttc gataatctct gaatccttca
     1321 agcgacgagc ccataccgct ctgtatgctt cttccctagt atctcgatta gtgacttgga
     1381 gaaacttccc catctgttgc atggtgcgtt cctctccttg gaattgaact gtcattgatc
     1441 cggagatttc ctcatatttt tggccaagtt ttgtgagttc ggtgtagagg gatatgttct
     1501 cctctctgaa tatgcggatg tctgcctcaa tatctcgaat cattactcca taggtgcttg
     1561 gatctaattc attgatgact ggactagaca tgatgcgacg gttcaatcga tcgccaattt
     1621 cggaaagttt cggctctgtg ttttcaacaa aatcgaggta cgcctccttc tttacttcat
     1681 catcagttga gcaagtcatt gccacataga gccgggagcc ggcttctgag acccattctc
     1741 tcagttctga ttcatcccga atgagttctt ccagcccagt tactgtatct actgaacgtt
     1801 gcactaggtc ttcgtacaac ggttgtagtg attcccaatt ggtggcatcg agagtatctg
     1861 gaacaaaggt catgcatcta atgtcgaaga cctaatccgt aaatgattgg atgaaatgat
     1921 tagtccgatt gaacagattt cggaccaaca ggcaacggtc cttcctcgcg agtccatttc
     1981 gcacatttcc agatctcaac tgcctccgtt accttttgac gcaaggcttc gagttctgga
     2041 tgatcaggat tgttttcctc agtccaacag gcgatacagt agcgcttccc cttgttgtcc
     2101 acgtagttca ttggtgtgca gtagacatcg catgtcacac agttacggag accatggaac
     2161 ttcggcattg ccctagccac gggtgttcac cctatgaggt tcacgatgat aatcaacgga
     2221 tatctgcgct cgctgccatc attatcattg atgattcgat accgctaatc ggttcagaag
     2281 atgggatttc tagtcgatct gcaccttctc gattcggcac aggtctagca gttcgcaggt
     2341 ctccatttaa ccatggcatg aggtctgaag ccatctgttc aatcgctggg tcgtgtgcag
     2401 gatacccctc caataggccg tttgaatcaa ttccagtggt tcttggaaga tagacaatcc
     2461 atacatggtc atctccttct ctcggaccga ttcgatcgaa agcaagtcga atctggtgtg
     2521 ttcctgccag gatacgaata aattctgcat caatagtcct tgcaaccata gaatctcgtt
     2581 cctcattacg ggttgcaaca tgccaagagg cccataggtg tctatcgctg gagggaattg
     2641 gtccagcgat cagcgcccat ctatcagatg gacgacgttc aatccaatca ctgatcaata
     2701 ctcctacgtc gttgattggt tcgtcgaggt cgacacccca tgcggggaac catggtacat
     2761 cgccgggttc catgaacggt gccagaacgt tcgatttttc aacgcctcgt tcagcgacgt
     2821 cgtgcaagga gtcgttgtgc attagaaatc gtattatcga cgagtcgtgg actccatccg
     2881 cgaagatcct ccaatcgctt tcgatctcgt gggc
//
LOCUS       DUKB01000148            2706 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_171439, whole genome shotgun sequence.
ACCESSION   DUKB01000148 DUKB01000000
VERSION     DUKB01000148.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_171439"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     assembly_gap    146..439
                     /estimated_length=294
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<440..1754)
                     /gene="tmk"
                     /locus_tag="HA345_04905"
     CDS             complement(<440..1754)
                     /gene="tmk"
                     /locus_tag="HA345_04905"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:NF014299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HIH84729.1"
                     /translation="MYLITLEGGDGSGKGTATKMVADILRQEGAFTSVQITAEPRRNH
                     PLGQLAVEAVRTGDAGPLQEAGYFAADRLDHSHMWIRPRLMLGAAVVSERNVHSSLVY
                     QGIVGDLGLEEVARLNANALVPDLTIWVDCEPEIALKRINEGTLRMATVNKTEYFETD
                     ELQTRIRIGFQQLLGGEVTMPEPFNRGQVEGPIMNHKTEKDLEKTLRGTIRRFLRSSP
                     SPLNVSTQEVEMALLKQSMNAQDGQQTLNVGGEPQKDHEEWLNGTPPWRVLASAHSIY
                     ATAWEASDERLATQVPRSALSRTVFSIVGTLSLVPSADVRRLRATLGPVRSISHRHTQ
                     RMLQFLDGQQGWIRRHRSILGREAPRAELRPDWLAFGRMALILAPLRPWIDEWAKKAG
                     ERPRWRDSLPQILNEDEDDVRAAAWMAIERFQAVGTGLDPERPLPN"
     gene            complement(1759..2616)
                     /locus_tag="HA345_04910"
     CDS             complement(1759..2616)
                     /locus_tag="HA345_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84730.1"
                     /translation="MQDDDGLVKVRVMDEFDDLESELAADDEEIRVDSSDIRTEASEI
                     AIRAIRQGAEIGGELPVVRKIAIMLIMAGSLLGLLFGVLLISADPSDLLSNPTGIAEG
                     EAVVAGLLVNEITEEGEGGEYLEGVEVKLLDEQGNLITRAFTDQNGRFMFDEQTRQTR
                     IVEVRTDGNITEQRILIPGEVTQITITMRAGSGTNTVDLRMDSTLQDSVDVGTAVAVF
                     TVLTAAIGFGAAMEALRGNSYRRTQWLSGIALFSRGGVFIGPGLILAGMALNRIARRQ
                     FEDWTELEE"
BASE COUNT          532 a          639 c          591 g          650 t
ORIGIN      
        1 cactcgaccc catggacatt gaagagcctg ctaacatggc gatgtggatg gaactcggtg
       61 aactctgatt attctccacg ataccatcgt ttcagatcgt cgatatcgtt tggaagcggt
      121 cgttctgggt ccaagcctgt acctannnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnc gtttggaagc ggtcgctctg ggtccaagcc tgtacctact
      481 gcctggaatc tttcgattgc catccaagca gcagctcgca catcatcctc atcttcattg
      541 agaatctgag gtagtgaatc tctccagcga gggcgttctc cagccttctt tgcccattca
      601 tcaatccaag gtcttagtgg ggcaagaatc agggccatac ggccgaaggc aagccagtca
      661 ggtcttagtt cggctcttgg agcttcacgg cccaaaatgc tccgatgacg gcgaatccag
      721 ccttgttgtc catcgaggaa ttgcagcatt ctctgcgtgt ggcggtgact aatcgagcgc
      781 acgggtccga gagttgcacg tagtcgccgc acatctgcag atggaacgag gctcagagtt
      841 ccaacgattg agaatactgt tctggaaagg gccgatctag ggacttgggt ggctaggcgt
      901 tcatcggatg cctcccaggc agttgcatat atcgaatggg cagaggcaag tactctccac
      961 ggaggtgttc cgttaagcca ttcttcgtga tccttctgag gttctccacc tacattcaga
     1021 gtttgttgcc catcctgggc attcatagat tgcttgagca aggccatttc aacctcctgt
     1081 gtagaaacat tcagtggcga gggtgaggat ctgagaaagc gtcgaatcgt tcccctcagg
     1141 gtcttttcaa gatctttttc cgttttatga ttcatgatcg ggccttcgac ttgtccgcga
     1201 ttgaagggtt ccggcattgt aacctctcca ccaaggagct gctgaaatcc gattctgatt
     1261 ctagtttgta actcgtcagt ctcgaagtat tctgtcttgt taactgtcgc cattctcaat
     1321 gtaccttcat taattcgttt caacgcaatc tcgggttcac aatcgaccca gatggtaagg
     1381 tctgggacga gagcatttgc gtttagccgt gcaacttctt cgagacccaa gtcgcccact
     1441 atgccttggt agacaaggga tgaatgcaca ttcctctctg acacgactgc tgctccaagc
     1501 atgagtcggg gacgaatcca catgtgggaa tggtctaacc gatctgcggc gaagtaacct
     1561 gcttcctgca agggtccagc atcccctgta cggacggctt caactgccaa ctgtccgagt
     1621 ggatggtttc gtcgtggttc ggcggtgatc tggactgatg tgaatgctcc ttcttgacga
     1681 agaatatctg cgaccatctt cgtagctgta cccttgccgg aaccgtcgcc tccttcgaga
     1741 gtgatgagat acatcagctc actcctcgag ttcggtccaa tcctcgaatt gtcgacgagc
     1801 gattcgattt agtgccattc ccgcaagaat aagtccgggg ccgatgaaaa cgcctcctcg
     1861 gctgaataga gcgataccac tgagccattg agtgcgacga taggaattgc cgcgtaaagc
     1921 ctccatggct gcaccgaatc cgattgcagc ggtaaggaca gtgaatactg ccacagctgt
     1981 ccctacatct acactatctt gcagtgtact gtccattctc aaatcaactg tattggttcc
     2041 agaaccggcc ctcattgtga ttgtgatttg ggttacttcc ccgggtatga ggattcgctg
     2101 ttcagtgatg ttaccatcag ttcttacttc cacaattcgt gtttgccgtg tttgttcatc
     2161 gaacataaag cggccattct gatcggtgaa ggctcgtgtg atgaggtttc cttgttcatc
     2221 taacaatttg acctctacac cttctagata ttcgccacct tctccctctt cagtaatctc
     2281 attgacaaga aggccagcga caacagcctc cccctcggcg attccggttg gatttgagag
     2341 caggtcggat gggtctgctg agatgagtaa tactccgaat agtagcccaa ggagacttcc
     2401 tgccatgatt agcataattg cgatctttcg cacaactggc agttctccac caatctccgc
     2461 accttgtcgg attgcacgaa ttgcgatttc acttgcttca gtgcggatat cagacgaatc
     2521 aactcgaatc tcttcatcat cagccgctag ttcgctctca aggtcatcga attcatccat
     2581 tacgcgaacc ttgacaaggc catcatcgtc ctgcatctca agcctcctct tgaaggtcgt
     2641 taggggaggg ggcttgaatc cccttcggtt ccgagtttac tcgtaatgcc gaccctgcaa
     2701 gaggtc
//
LOCUS       DUKB01000149           12905 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_42114, whole genome shotgun sequence.
ACCESSION   DUKB01000149 DUKB01000000
VERSION     DUKB01000149.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12905)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12905)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12905
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_42114"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(37..954)
                     /locus_tag="HA345_04915"
     CDS             complement(37..954)
                     /locus_tag="HA345_04915"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012968.1,HMM:NF013200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HIH84731.1"
                     /translation="MEVTIIAETNEEGIHPVTAQMVTAAVSLGASPTILCPGGVGCDT
                     AASIEGVSSVISVEGDCFASFDGGAWAASLNSAAGSGLVLAAATPNGREVAARMAASR
                     GIPVLQDATGINDGLTVERPIYSGKAMESVKVDGDCVVTIRPNAFTAAGYGGSASVST
                     VNHSADVTVTVQEAIAKASARLDVAEADIVISGGRGMGSIDNWSSLEEVADQIGAAVG
                     ASRAVVDEWGLSHGIQVGQTGKVVTPTLYIAVGISGAIQHLAGMRSSKYIVAINKDAD
                     APIFGVADYGIVANWEDALPALKDALSSL"
     gene            complement(968..1729)
                     /locus_tag="HA345_04920"
     CDS             complement(968..1729)
                     /locus_tag="HA345_04920"
                     /inference="COORDINATES: protein motif:HMM:NF013200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HIH84732.1"
                     /translation="MDIAVLIKYVPDSTAKITVSGDRVNEGGVSKWSISPFDEYALEA
                     ALGMKESSGASVTAITCGPNRSEKGLRDAAAVGADSLVHISVDDLTALDSTKTQALLA
                     AAVQSSGASIVFCGKQAADTNAGSTGPGVAEIMGAACVTGVTEVAAEGSGLSALRATS
                     GGAERVTLSTPCVLTFDKTEIELRRPNVKGIMMAKKKPIDFQDAASLGVDTSGSTANI
                     TSHSPPAEKAPGQMFEGASTVNDVVQKLRNEARVL"
     gene            complement(1816..2568)
                     /locus_tag="HA345_04925"
     CDS             complement(1816..2568)
                     /locus_tag="HA345_04925"
                     /inference="COORDINATES: protein motif:HMM:NF025736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84733.1"
                     /translation="MPDWESRLLSPWPIWNRLLPVDQDVRSSLTRISVLTIVTMLPLY
                     GLTNWMQVWIGRSVMNPQIALDRDIPAIPESVWIYLGLFWFAYPVLLILVPKTVDGVR
                     SLITALQTLFVVELISIAIFFIAPAEVDLRDQMVAALVGLDTMSAQIVETMIGVDQPM
                     SSWPSLHVSHCVIIWAVGRNWMIHRKYPDVARILFGTTLLLIIFSTLTTKQHHIFDLV
                     TGGGLGLYASVLMLRQDTFIPLDSESNLESEE"
     gene            2671..3990
                     /locus_tag="HA345_04930"
     CDS             2671..3990
                     /locus_tag="HA345_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84734.1"
                     /translation="MVEQDSMVPVAAIVCFLLGVTTLILLNRSKDRMWMDRITGLMLG
                     WCLVFFGLRYAAASVRDTTWWEGVNSTPDLDIFQYLFYSFTIASIVIGAMFPFVYPYP
                     IFQKASSIKLVTPITFGLSLIIIISMMLTEYHYVWFSHILFLPGYLILLLVYFRFMSE
                     EMLGDDETARRMSLASGIILIAFFGQQMTWWLAQIISINDEFVGRFAIEAGVGDYTYV
                     PNWIGFTVMNSVAAISILSLTAGETWRATKKGINGFTIVIYMILGVGLISGIADFAVL
                     GIVESCMYSVCEDFPESYDIWYKFTTEALVLLFTPLMVMYLLLHFDVIDSAAENNQWM
                     TRIIVILMLLIVSSTMIELLQSILPVSDMISSAILAMVVAIFIGWEERIMKTLIAQGE
                     SISKKLQTLNELNEPEIEERDLQLFSKSMAVLTGFIFILCLLYSSIR"
     gene            3999..4700
                     /locus_tag="HA345_04935"
     CDS             3999..4700
                     /locus_tag="HA345_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84735.1"
                     /translation="MSSNEGDMKNVLSNLFSNREGTQFALISFIATLILISYTGYDTV
                     VIRTGIISEFADDNEYRITFSTQNETMQEVVTLQDDETRNLLFDLSEIDIPDGYSIGH
                     IDVSVTSEEESGFSGQCDSVAGDIIMNDLAAQWSDPRNNLSGQDSSCIPIELYLAIYP
                     NFNGESITVSAINEYQALQNWSEEGWGEGSLSIDLDLDVNAPLGFDPGGFDSDEEITV
                     DVYITLFKVSIQEIE"
     gene            complement(4707..5180)
                     /locus_tag="HA345_04940"
     CDS             complement(4707..5180)
                     /locus_tag="HA345_04940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015942474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HIH84736.1"
                     /translation="MQPAVVISVNVNPDGGVPKNPVECAFLRKGGVEGDRQNDLKHHG
                     GPNRAVCLFSSEIIEALRKEGHPIDAGSVGENLTISGLDWDVLQPGSQLNIGGALIEV
                     TGPAPPCRTIQKSFVEGNYSRISEKKNSGWSRWYARVLVEAQVHPKDAVIIRECQ"
     gene            complement(5181..6398)
                     /locus_tag="HA345_04945"
     CDS             complement(5181..6398)
                     /locus_tag="HA345_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="S8/S53 family peptidase"
                     /protein_id="HIH84737.1"
                     /translation="MRSLQVLLLSLLLMGSSIAGCFGKDTVDEVAENEPEEFGAYSVV
                     APIDTGINVYHERFILNETLPDWLLDGLGVTMWCNITMEGTWQERYEADQETCWDKIT
                     STDIVYFPGTRIIGTTPDDGTDIPILDDPADGHGTAVTGAVLDANPDAIIFFVEGFSD
                     AAVLAAANQPLVDIITTSFGPIGSVPVPGIEDATRVAVVENSKVHTGASDNTPSPAVQ
                     DSTAGPPWSIGVSGYAEEEDDQKETMSGSYPDMAADWTQLLPNHDDTSGYHETSGTSF
                     ATPRTAGILSLVLTMLREDVGDMGSGASDERGGFLVNSTNLSISNSDLRDALNLSAWY
                     PSFSTWDPTTGTLPISPIAPCTQVGWGVVNMSNVEPIHAHLAGVENMADRPADVVACM
                     EANQAIREAYWGD"
     gene            complement(6435..7067)
                     /locus_tag="HA345_04950"
     CDS             complement(6435..7067)
                     /locus_tag="HA345_04950"
                     /inference="COORDINATES: protein motif:HMM:NF024880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HIH84738.1"
                     /translation="MRPAVDVFSEWADAGKDIGMERGHAPAVGEILTAAFEEMNLSIL
                     ERGFTVIDAGCGNGWVVRMLAEREDCVIAMGIDGAPSMIANALEADPDGMYTCADLMV
                     WRPPEPVDLVHSMEVLYYLDDIPSMLHRIRDLWLVPGGVFAFGVDHYAENEDSLSWPE
                     KVGVHMTTLSENEWIELVESAGFDVLRCFLSAPGDGWPGTLSVIARAPSI"
     gene            complement(7080..8255)
                     /locus_tag="HA345_04955"
     CDS             complement(7080..8255)
                     /locus_tag="HA345_04955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014099546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HIH84739.1"
                     /translation="MPYEALDFYDIDRMLTEEEIMLRDMVRDWVDEKVIPNIEEAYNG
                     AYFPDEWIRDLGEMGVLGMVIPEDYGCAGMSYTAYGVVCRELERGDSGLRSFCSVQGS
                     LSMHPIHKFGTEEQKHKYLPGMATGEIIGCFGLTEPDYGSNPGGMVAKAEKVDGGYVL
                     NGAKMWITNGTIADIAIVWAKLDGDIRGFIVEKDDEGFTAPEQKGKHSLRASVTSELV
                     LQDVFVPEDRYLPGAKGLGGPFSCLNRARYGIAWGSLGSAQACFDAAKNYALERIQFD
                     HPIAAYQLIQMKLATMLREITKGQLLAYHLGRRVDEDDWFPEMISLAKMNNVDIALEI
                     ARVARDIHGANGVTDEYPIMRHMNNLESVKTYEGTHDIHNLIIARHITGIQSFTRKL"
     gene            complement(8330..9562)
                     /locus_tag="HA345_04960"
     CDS             complement(8330..9562)
                     /locus_tag="HA345_04960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HIH84740.1"
                     /translation="MDSGRILRALCLVLVLISVSMSPVAAESAVRIDEVIQLTDQTVY
                     LNALDSDESNVLAIGDDGVVLLIPPEQPSGAEMLSPITDEDLLAVDFHPAGNALIVGK
                     SGEIIRYDHQDRRLSNVSGIGAVEISTLTAVSWNTNGAWAYISSDSGLIWRFRSLAEG
                     NEIVPIENTRSSAVKAIDCHSVIRLCVVATESDGIALIDSDHQISWIGGSSVIWTDVE
                     CAFGNNPDCVAVGSNQNLATIHLDDSIDGSSTMDAVVLSEAGGEFTHICAHSADRLMV
                     AMVPFGLVEHDVAKEDSFPWLDHADIASTEDEIATRQVTCSWGTGADDGWILNDRGRV
                     ARFVPDNEIDNPLVSSMVGYVLTVVIVISVPGIVVGLIFMNSPSLQAMYNRWRRRRKG
                     LEPSLKDRREDRRRKRNS"
     gene            9657..10172
                     /locus_tag="HA345_04965"
     CDS             9657..10172
                     /locus_tag="HA345_04965"
                     /inference="COORDINATES: protein motif:HMM:NF037822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5611 family protein"
                     /protein_id="HIH84741.1"
                     /translation="MERFAVKRGLVKQVTADGGLGKLAQEFFDDVNATGENAFTGSHG
                     IMSDIKAHYDGDALITDVVNDRPNFDDRDAMKAAQDDRRKFTTFLDVATGYNSKQRGD
                     KAKEWVKKASKAKSAISGALHFMSMAKSMSDEKRETAEALIAEIEAALEAGDNTKAAG
                     RGEKLSKMLNQ"
     gene            10183..11319
                     /locus_tag="HA345_04970"
     CDS             10183..11319
                     /locus_tag="HA345_04970"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF006330.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HIH84742.1"
                     /translation="MSDAEEWISASNGSDDLDDASHNRLVTMLDGVEEAVGLDHLIGI
                     LNGAKSHSGDDVIRCYVGFEPSGKAHIGWKVIANLLRRLLDAETNVLVFLADWHAWIN
                     DKFGGNMESIQLTADYMEDVFRALLDHPDEGDGPGQLRFLRASELMENPDYWARMLRC
                     AKNQSLSRVRRTFSIMGRSEDSSDGDLSKFFYPAMQAADIFELEIDIAIGGMDQRKAH
                     MYMRGVADSQGWTKATCLHTPILSGLKTSGARMESFDHKMSKSDPSGAILLHDGAKKL
                     KKKVNGAYFDPNDAESPVYELIEHVILPEFGILEVRPNPKYGLPSDWEDMESIRNAIG
                     AGALHPLDLKIAVAEMLHKGLSRVSEYFEKHPDNLREVEKLLNL"
     gene            11387..>12905
                     /locus_tag="HA345_04975"
     CDS             11387..>12905
                     /locus_tag="HA345_04975"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013333.1,HMM:NF020129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase family
                     protein"
                     /protein_id="HIH84743.1"
                     /translation="MHMDVGIDDIAIHFPRLFFDMRDFAAFRGADYDKLNKGLGLNAM
                     SIPDAHEDTATMGANAVARLIDRNGLDPRSIGRIYLGTESALDGAKPTATYILDMLQQ
                     RYTRDHGDDCFRNCDVVDMTFACIGAVDALHNTLDWVARGGEDGDRIGIVVFSDNAKY
                     EMKSTGEYTQGAGGGAILVRMNPRLLVIPDHWGVSTTPVHDFFKPRREVPVRSVIDRV
                     LALAREAGQNLRSGLGDRMMRTLRRSEMTNDELFAEETLKIHRDTPVFDGQFSNRCYM
                     EAVKEAFIDFHGKAVRSGRHNPEDDPILTEQWKRIIVHLPYAFQGKRMFPDVFRHDRR
                     GTEVWKNIVEQIGAEPLPEHFDDTPEGLEEFGRLNDAYRRSISKTEEFKQFANERIER
                     GQRASSLIGNQYTGSIFLALMSTLECDYNENNPIEGREIGLCGYGSGAKAKVFEGIVQ
                     PQWKEIASRFMLFERLDCRYPIQSEDYEALHRGARTDSIVEPKEEFIRVKTPESEG"
BASE COUNT         3590 a         3283 c         2984 g         3048 t
ORIGIN      
        1 aatgaaaagg acgtcttgga tcttcttgat gacgaatcag agggatgaaa gcgcgtcctt
       61 gagggcaggt agagcatcct cccagttcgc gactatacca taatccgcta caccaaagat
      121 gggggcgtca gcatccttgt tgattgcaac aatgtacttc gacgaacgca tgccagcaag
      181 atgctgaatc gcgcctgaaa tacctactgc aatgtagaga gtcggcgtta cgactttgcc
      241 ggtctggcca acttggatac cgtgagaaag accccattca tcaaccacag cgcgggatgc
      301 gccaacagca gcgccaatct ggtctgcaac ctcttcgaga gatgaccagt tgtcgatact
      361 gcccatgccg cggccacctg agattacaat atctgcttca gcaacatcta gtcgagcgct
      421 tgccttagca atcgcctcct gaaccgtaac agtcacgtcg gccgagtgat tcacagtgga
      481 tacggatgct gaaccaccat aacctgcagc ggtgaaggca ttaggccgaa tagtcacgac
      541 acaatcgcca tcaaccttca cactctccat cgccttacct gaataaatcg ggcgctcgac
      601 cgtcaaccca tcattgattc cagtagcatc ctgtaggacc ggaatgccac gtgatgcagc
      661 catcctagct gcgacctcac gaccattagg agtagcagca gcgagaacga gacctgaccc
      721 tgcggcgctg ttcaaagagg cggcccaagc gccaccatcg aaagaggcga agcaatcacc
      781 ctcaactgag atgactgaac ttacaccttc gattgaagca gctgtatcac agccgactcc
      841 accggggcag aggattgtcg gagaggctcc aaggctgacc gccgcggtaa ccatctgggc
      901 agttactggg tgaatccctt cttcgttggt ctcagcaata attgtgactt ccatctctta
      961 cacctcatca gagtacccta gcctcatttc gtaacttctg aacgacatca ttcacagtag
     1021 aagcgccttc gaacatctgc ccgggtgcct tctctgctgg agggctatgg gatgtgatgt
     1081 tcgccgtaga tccggatgtg tcaacgccaa gtgatgctgc atcttggaaa tcaatgggct
     1141 tcttcttcgc catcatgatg cccttcacat tagggcgacg tagttctatc tcggtcttat
     1201 cgaatgtgag tacgcatgga gtggacaaag taacacgttc agcacccccg gaagttgctc
     1261 taagagcgga taggcctgat ccttcggctg caacctctgt tactccagtt acacatgcgg
     1321 cacccataat ctctgccaca cctggacctg tactcccagc attggtatca gccgcctgct
     1381 tcccacaaaa tacgattgat gctcccgaac tctgaaccgc tgctgcaaga agtgcttgcg
     1441 tcttcgtaga atccaatgca gttaggtcat ctacagagat atgaacaaga gagtcagcgc
     1501 caactgctgc cgcatctcga agccctttct cagatcgatt aggaccacat gtgattgcag
     1561 ttacactcgc accagaagac tccttcatac caagagccgc ttccaaagca tactcatcaa
     1621 agggactgat tgaccacttg ctgactccgc cttcattcac tcgatcacca ctgactgtga
     1681 tttttgctgt tgagtcagga acgtacttga ttagaacggc tatgtccatg tttccacccg
     1741 tggttatccc gcccaattga atcgcctcta tcaagattcg gcaaacacct gaacacaaga
     1801 acaggtgaga gtatctcatt cctctgattc aaggttagat tctgaatcga ggggtatgaa
     1861 ggtgtcctgt cgcaacatca agacagaagc atagagacca agccctcctc cagtcaccaa
     1921 gtcgaagata tggtgctgct ttgtggtgag ggttgagaat ataattagaa gaagtgttgt
     1981 accaaacaga attcgggcta catccggata cttccgatga atcatccaat tacggcctac
     2041 ggcccatatt atgacacaat gggaaacatg caaagatggc cacgaagaca ttggttgatc
     2101 tacgccaatc atggtctcaa caatctgagc tgacattgta tccaaaccaa ccaaagcagc
     2161 caccatctga tcacggagat caacctccgc aggtgcgata aagaaaattg cgatactgat
     2221 caactccacc acaaaaagtg tctgaagtgc cgtgatgagc gacctcacgc catctaccgt
     2281 ctttggcaca aggatgagga ggactggata ggcaaaccag aacaggccaa ggtatatcca
     2341 tacagattca gggatggcag gaatatctcg atccaatgcg atttgagggt tcatcacaga
     2401 gcgccctatc cacacctgca tccagttcgt cagaccatag agtggcagca tcgtgacgat
     2461 tgtcagcaca gatatgcgcg taagggacga cctgacatcc tgatcaacgg gaagaaggcg
     2521 attccaaatc ggccaaggcg aaagaaggcg actctcccaa tcaggcatag taatccgttt
     2581 accgattaag cacctgaacc ttcgcaatga taacggaaga tatggccaat atggaataat
     2641 gcgtataacc tagagtcgat acggtaagac atggtcgaac aggattcaat ggtgcctgtt
     2701 gcagccattg tttgcttctt attgggagtc acgacactga ttcttcttaa tcgatccaaa
     2761 gaccgaatgt ggatggatcg cattaccgga ttaatgttag gttggtgcct cgtcttcttc
     2821 ggattacgct atgctgcggc gtctgtaaga gacactacgt ggtgggaggg cgtcaattca
     2881 acaccggatt tggacatttt tcagtatctt ttttactcat tcaccattgc atcgattgta
     2941 atcggcgcaa tgtttccttt tgtttacccg tatccaatat tccagaaagc atcgtcaatc
     3001 aaattagtaa ctccaatcac attcggcttg agcctgatca tcattatctc gatgatgttg
     3061 accgaatacc actatgtttg gttttcacac atacttttcc ttccaggtta cctcatccta
     3121 cttttggtat acttccgttt catgtctgaa gagatgcttg gtgatgatga aactgctagg
     3181 agaatgtctc tggcatcagg gattatccta atcgcatttt tcggacaaca gatgacctgg
     3241 tggttagcac aaatcatttc aataaacgac gaattcgtgg gccgatttgc aatagaagcc
     3301 ggcgtgggcg attatacata tgtcccgaat tggatcggct tcaccgtcat gaattccgtg
     3361 gcagcaatct cgatattatc attgacagca ggagaaacat ggagagcgac aaagaaggga
     3421 atcaatggtt tcaccattgt aatttacatg attctcggag tcggattaat cagtggtatc
     3481 gcagactttg ccgtactcgg tatagttgaa agttgcatgt acagcgtttg cgaggacttc
     3541 cccgaaagct atgacatctg gtacaaattc actactgaag cactggtact actattcaca
     3601 ccgctcatgg tgatgtatct cctactacac tttgatgtca ttgactcagc ggcggaaaac
     3661 aaccagtgga tgacgagaat cattgtcata ctgatgctac taatcgtttc atcaacaatg
     3721 attgaattat tgcaatctat cttaccagta tccgatatga tatcctccgc gattctcgcc
     3781 atggttgttg cgatcttcat cggttgggaa gagcgaatca tgaagacact gattgcacaa
     3841 ggagagagca tctcaaagaa gttgcaaacc ctcaatgaat tgaacgaacc agaaatagag
     3901 gagagggatt tacaactatt ctccaaatct atggccgtac taactgggtt tatttttatc
     3961 ctctgtctct tgtattcgtc aattaggtag gtgtaaaaat gagttctaac gaaggagata
     4021 tgaaaaatgt cctgtctaat ctcttttcca acagagaagg aacgcaattt gcattaattt
     4081 cattcatagc aactttgatt ctaatcagtt acactggata cgataccgtc gttatcagaa
     4141 ctgggattat ctctgaattc gcagatgata atgagtaccg gattacattc tcaacacaaa
     4201 acgaaaccat gcaagaggta gtgacattgc aggatgatga gactaggaat cttcttttcg
     4261 atttgtctga aattgacatt ccagatggat attcaattgg ccacatcgat gtgagcgtca
     4321 catctgagga agaatcagga ttctccggcc aatgtgattc tgttgcaggc gacatcatca
     4381 tgaatgactt ggcagctcaa tggagcgacc cgaggaataa tctctcagga caagacagca
     4441 gttgtattcc aattgaactt tatttggcaa tctatccaaa cttcaatgga gagtcgatca
     4501 cagtatctgc tatcaatgaa tatcaggcac ttcagaattg gagcgaagag ggatggggcg
     4561 agggttcatt gtccatcgat cttgaccttg atgtcaatgc accactaggt tttgatccag
     4621 gaggttttga tagtgacgaa gaaattactg tcgacgtata catcacgtta ttcaaggtct
     4681 caatccaaga gattgaatga acgaatttac tggcattctc ggataatgac tgcatcctta
     4741 ggatgaactt gagcctcgac taggacacga gcataccacc tcgaccaacc agaattcttc
     4801 ttctctgaaa tcctcgaata atttccttcg acaaacgatt tttggatagt tctgcaaggt
     4861 ggagccggcc ctgtgacctc aatcaaggca cctccaatat tcaattggga ccccggttga
     4921 aggacatccc aatccaaacc agaaatagtt agattctcac ccactgaacc ggcatcaatt
     4981 ggatggccct cttttctcaa cgcttcgatt atctcgctcg agaatagaca tacagcgcga
     5041 tttgggccac catggtgctt caggtcattc tgacggtcac cttccacacc acccttacga
     5101 aggaaagcgc actcaacggg gtttttgggg acacccccat caggattcac attaacggat
     5161 atgacgaccg cgggttgcac ttaatccccc caatatgctt ctctaatcgc ttgattagcc
     5221 tccatacagg ccacaacatc tgctggtcga tcagccatat tctctacacc ggctagatga
     5281 gcatgaattg gttcgacatt cgacatgtta accacgcccc atccaacctg tgtacaaggc
     5341 gcaatagggg agattggtaa cgtccctgtg gtcgggtccc atgtcgagaa tgagggatac
     5401 catgcggaga gattcaatgc atcacgaaga tcagagttag agatgctaag attcgtacta
     5461 ttgacaagga agcctccgcg ttcatcggaa gcaccagacc ccatatcccc tacatcctcc
     5521 ctaagcatcg taagaacgag gctcagaata cctgctgtcc gaggagtcgc aaatgaagtc
     5581 ccagaggttt catggtagcc agatgtatca tcatgattag gtaagagctg ggtccaatca
     5641 gcagccatat ccgggtagga gccgctcatc gtctccttct ggtcatcctc ttcttcagca
     5701 tatcctgaga cgccaattga ccaaggaggt ccagctgttg aatcctgaac tgcaggcgag
     5761 ggggtgttat ctgatgcacc tgtatggacc ttggagttct caactactgc aactcgcgtt
     5821 gcatcctcga taccagggac tgggactgat ccaattgggc cgaaggaagt tgtgataata
     5881 tcgaccaatg gttgattcgc agcagcaagt actgcagcat cactgaatcc ctccacgaag
     5941 aaaataatcg catcaggatt cgcatctaga actgccccgg ttactgctgt cccatgacca
     6001 tctgctgggt catcgagaat tgggatatct gtaccatcat caggtgttgt accgataatt
     6061 cgtgtacctg ggaagtagac aatatccgta gaagtgattt tatcccaaca ggtctcctga
     6121 tcagcctcat agcgctcctg ccaagttcct tccatggtaa tattacacca catcgtgact
     6181 ccaaggccat ctagcaacca atccgggagt gtctcattga gaataaagcg ctcgtgatat
     6241 acattgatac ctgtatcaat cggcgcaact acgctgtatg ctccgaactc ctctggttca
     6301 ttctcggcaa cctcatcgac tgtatcctta ccgaagcatc cggcaattga agaccccatg
     6361 agaaggaggc tcaacagtag cacctgaagc gagcgcatat tctccggaat caggggtttg
     6421 gtttgaggtt gatgtcagat tgatggagca cgagcaatta cagacagagt tccaggccat
     6481 ccatcacctg gagccgaaag gaagcaccgt agcacatcga atccagcgga ttccaccaac
     6541 tcaatccatt cattctcaga caaagtcgtc atatggactc caaccttctc tggccatgat
     6601 agactatcct cgttctcggc atagtggtct acaccgaagg caaatacacc tccaggtaca
     6661 agccatagat ctctgatacg atgtagcatc gacggaatgt catcaagata atacaagacc
     6721 tccatcgaat ggacgagatc cactggttct ggaggacgcc agaccatcag gtccgcacaa
     6781 gtgtacatcc catccggatc agcctccaag gcattagcaa tcattgacgg tgcaccatcg
     6841 atacccatcg caatgacaca atcttctcgt tctgccaaca tacggactac ccaaccatta
     6901 ccgcaaccag catctatcac tgtgaatcca cgttcaagga tactcagatt catctcttca
     6961 aatgcagcag taaggatctc tcctacagca ggagcatgac cacgctccat acctatgtct
     7021 tttccagcat ctgcccattc actgaataca tcgaccgcag gccgcatccg gacatcacct
     7081 cagagcttgc gagtgaatga ttgaatccct gtaatgtgcc gggctataat gagattgtgg
     7141 atatcgtgtg tgccctcata cgtctttaca gattcaaggt tattcatatg cctcataatc
     7201 ggatactcat ctgtaacacc attggcacca tgaatgtcgc gagcaacgcg agcaatctca
     7261 agagcgatat cgacattgtt catcttcgcg agactaatca tctcggggaa ccaatcgtcc
     7321 tcatcgacac gtcggccaag atgatatgcg agaagttggc ccttcgtaat ctcacggagc
     7381 atagttgcaa gtttcatctg aattagttgg taggctgcaa tgggatgatc gaattggatt
     7441 cgctccagag catagttctt ggctgcatcg aagcacgctt gggcagaacc aagggagccc
     7501 caagcaatac catatcgagc acgattaaga caagagaatg gcccacctag acccttcgca
     7561 ccaggaagat accgatcttc agggacaaat acatcctgta gtaccagttc agaggtaaca
     7621 gatgcccgga gagaatgctt gcccttctgc tcaggagcag tgaatccctc gtcatccttc
     7681 tcgacgatga aaccacgtat gtctccgtca agtttcgccc aaacgattgc aatatctgca
     7741 atcgtcccat tggtaatcca catcttcgca ccgttcagaa cataaccgcc gtcgaccttc
     7801 tcggccttag cgaccatacc tcctgggttg gagccgtaat ccggctcagt gagtccgaag
     7861 caaccaatga tctcacctgt cgccataccg ggcagatact tgtgcttctg ttcctcggta
     7921 ccaaacttgt ggatagggtg catcgagaga gagccctgaa cgctacagaa agaacggagt
     7981 ccagagtcac cacgctcaag ctcacggcag acaacaccgt atgcagtata agacatacct
     8041 gcgcaaccgt aatcctcagg aatgaccatt ccaagaacac ccatctcacc aaggtccctg
     8101 atccattcat ctgggaaata agcaccattg tatgcctcct cgatgttcgg gataaccttc
     8161 tcatcaaccc aatcacggac catgtccctg agcataattt cctcttcggt aagcatccgg
     8221 tcaatatcgt agaaatccaa cgcttcgtat ggcatctgaa tcactccctg aaccactgcc
     8281 gaagcccgag ccgcttgaac cttcccgcac taggacctct acgttcgaat caagaattac
     8341 gcttgcgacg acgatcttct cggcggtctt tcagagatgg ttcaagccct tttcggcggc
     8401 gacgccaccg attatacatc gcttgcaatg aggggctatt catgaaaatc aaacctacta
     8461 caattccagg taccgagatt acgatgacca cggtcaagac atagccaacc atgctactta
     8521 ccagtggatt gtcaatttca ttatccggaa caaaacgggc aactcggccg cgatcattga
     8581 gtatccaacc atcatctgcc ccagtccccc aactgcaagt tacctgacga gttgcaatct
     8641 cgtcctccgt agaggctatg tctgcatggt ccaaccaagg gaaactatcc tccttagcca
     8701 catcatgctc gacgagtccg aatggcacca tagccaccat caaccggtcc gcgctgtggg
     8761 cgcaaatgtg agtgaactcg ccaccagcct cgctcaaaac aacagcatcc atggtggaac
     8821 tgccgtcaat ggaatcatct agatggattg tagcaagatt ttgattagac ccgacagcta
     8881 cacagtcagg attgttaccg aaggcacact ctacatccgt ccagattaca gacgaaccac
     8941 caatccagga tatctgatga tcagaatcga tgagagcaat accatccgac tcggtcgcaa
     9001 ccacacataa tcgaataaca gaatggcagt caatcgcttt cacagcacta gacctagtat
     9061 tctcaattgg aactatctcg ttaccttcag ccaatgaacg aaatctccag attaaacccg
     9121 aatcagatga gatgtaggcc caagccccgt ttgtattcca agagacagct gtcaaagtac
     9181 tgatttcgac cgctccaatt ccactaacat tcgatagacg ccgatcttga tgatcgtaac
     9241 gaatgatttc tccggactta cccactatca gagcatttcc agcaggatgg aagtccacag
     9301 caaggaggtc ctcatcagta ataggagaca acatctcagc acctgatggt tgctcaggag
     9361 gaatcagtaa gacaacgcca tcatccccta tagcgagtac attcgactca tctgaatcaa
     9421 gcgcattgag gtaaactgtc tgatctgtaa gttggataac ttcgtcaatg cgtaccgctg
     9481 actcggcagc gactggggac attgagactg aaatcagcac gagaaccaag cacaaagcac
     9541 gaagaatacg gcctgaatcc atggctctgc gagaaccttg gccttcatga tgtgaccggt
     9601 tcaacggagg atgtatacag agaggattca agtcctacct agcaccccct tgagacatgg
     9661 aacggttcgc ggtcaagcga ggattggtaa agcaagtgac agcagatggg ggtttgggca
     9721 aactggccca ggaattcttc gacgatgtga atgccacagg agaaaacgca ttcacgggct
     9781 cacacggcat catgtccgac attaaggcac actatgatgg agatgctctg attaccgatg
     9841 tcgtcaacga ccgaccgaac ttcgatgaca gagatgccat gaaggcagcc caggatgatc
     9901 gacggaaatt caccaccttc ctagatgtcg cgaccggtta caactccaag cagcgtggag
     9961 acaaagcaaa agaatgggtc aagaaggcct caaaggcaaa gtccgcaata tcgggggccc
    10021 tgcacttcat gtccatggct aagtctatga gtgatgaaaa gcgggaaact gcagaggcct
    10081 taatcgctga aattgaagcg gcacttgaag caggagataa taccaaggca gcaggccgcg
    10141 gtgagaaact ctccaagatg cttaaccaat gaggcgaatc taatgtcaga tgcagaggag
    10201 tggatctctg catctaatgg ctcagatgat cttgacgatg cctcccataa tcgacttgtt
    10261 acaatgcttg acggcgtcga agaagctgtc ggactcgacc atctaatcgg gatcttgaac
    10321 ggagcaaaga gccattccgg ggacgatgta atacgttgct acgttggatt tgaaccaagt
    10381 ggcaaggctc acatcggctg gaaagttatt gctaatctac tacgacgatt gcttgatgct
    10441 gagaccaacg tattggtatt ccttgcagat tggcatgcat ggatcaacga taagtttgga
    10501 ggaaatatgg agtcgatcca acttactgcc gactacatgg aagatgtatt tcgtgcactt
    10561 ctcgaccacc cagatgaggg agatggacca ggacagttac gcttcctcag ggccagtgaa
    10621 ctcatggaaa atccggatta ctgggcaagg atgcttagat gcgccaagaa ccagagtttg
    10681 agtcgtgttc gacgaacatt tagcatcatg gggcggagtg aagactcatc cgacggagac
    10741 ctctcaaaat tcttctatcc tgcaatgcag gcagcagata tattcgaact cgaaatcgac
    10801 atcgcgattg gaggaatgga ccagcgtaaa gcacacatgt acatgcgagg agtcgctgac
    10861 tctcaaggct ggacaaaggc aacgtgcctc cataccccca tactatcggg actcaagact
    10921 agcggcgcgc gcatggaatc tttcgatcat aagatgagta aatcggaccc tagtggagca
    10981 atattgcttc atgatggagc aaagaagctc aaaaagaaag tcaatggtgc atattttgac
    11041 cccaatgatg cggaatctcc agtttacgaa ctcatagaac atgtaattct gcctgaattt
    11101 ggtattcttg aagttcggcc taatccaaag tatggcctac caagcgactg ggaggacatg
    11161 gaatctattc gcaatgcaat cggcgcaggg gcacttcatc cactcgacct gaaaattgca
    11221 gtagcagaaa tgctacacaa aggcctatca agagtaagtg aatactttga gaaacatccg
    11281 gataatctac gagaagtgga aaaactgttg aatctctaaa ccacacctag ttgccaaaaa
    11341 tactggtaat ggtttgaaat gaggacatga ggccagcagg catgggatgc acatggacgt
    11401 aggtatcgat gacattgcaa ttcacttccc tcgcctcttt tttgatatgc gagacttcgc
    11461 cgctttccga ggcgctgact atgacaaact gaacaaggga ctcggtctca atgcgatgtc
    11521 cataccagat gcccatgagg ataccgcaac tatgggagca aacgctgttg cgcgcctcat
    11581 cgaccgcaac ggcctcgacc cccgatccat cgggcgcatc tacctcggca ccgaatccgc
    11641 acttgatgga gcgaagccga ctgcaaccta catccttgat atgcttcagc aacgctacac
    11701 tagagaccac ggtgatgatt gtttccgaaa ttgcgatgtt gtagacatga ccttcgcctg
    11761 catcggagcc gtagatgcac tccacaacac cctcgactgg gtcgctaggg gcggagaaga
    11821 tggagacagg attggcatcg ttgtattcag tgacaatgca aagtacgaaa tgaaatccac
    11881 aggggaatac acacaaggtg caggtggcgg agccattcta gtgcgcatga accccaggct
    11941 cctagtaatc ccagatcatt ggggcgtatc cacgacacca gtacacgatt tcttcaagcc
    12001 ccgtagagag gtacctgtcc gtagcgtaat cgatcgtgtt cttgctctcg cacgcgaagc
    12061 aggacagaat ctccgttcgg gccttggtga tcgaatgatg cggactctac gtcgatctga
    12121 gatgaccaac gacgaactct ttgctgaaga gaccttgaaa atccacagag atacgcctgt
    12181 atttgatgga cagttctcca atcgttgcta catggaagcg gtgaaagagg cattcatcga
    12241 ttttcatggc aaagcagttc gaagcgggcg acacaatcca gaggatgacc ctattctaac
    12301 cgagcagtgg aaacgcatca ttgtccacct cccatatgca ttccaaggca aacggatgtt
    12361 cccagacgtg tttcgacatg atcgacgcgg cacagaggtc tggaagaata tagttgaaca
    12421 aattggagcg gagccattgc cagaacactt cgacgatact cccgaaggcc tggaagaatt
    12481 cgggcgtctc aatgatgcat atcggagatc catttccaaa acagaggaat tcaagcagtt
    12541 cgctaacgag aggattgaac gtggtcagcg agcttcaagt ctaatcggaa accagtatac
    12601 tggatccatc ttcctcgccc tgatgtccac attggagtgt gactataatg aaaacaaccc
    12661 aatcgaagga agggaaatcg gcctctgtgg ctatggatcg ggtgcgaagg cgaaggtatt
    12721 cgaaggcatc gtacaaccac aatggaagga gatcgcgtcg cgtttcatgc ttttcgagcg
    12781 tctagattgc cgctatccaa tccagagcga ggactacgaa gcgttgcata gaggcgcccg
    12841 tactgactcg attgtagagc caaaggaaga attcattcgt gtcaaaacgc ctgaatcaga
    12901 aggac
//
LOCUS       DUKB01000150            2889 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_90430, whole genome shotgun sequence.
ACCESSION   DUKB01000150 DUKB01000000
VERSION     DUKB01000150.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2889)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2889)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2889
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_90430"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1586
                     /locus_tag="HA345_04980"
     CDS             <1..1586
                     /locus_tag="HA345_04980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84744.1"
                     /translation="TIEVEPVSGIEIVSIDAEATIDPGHKLRLPVEVRNLGNRPVSIH
                     LDILATDAQGTPLTDTPPTHFLYSSGWAVGVFDEYKIANLAPNESGVAILEYAAPFDA
                     EGEIHIRVLAQGLDDPFTILEENQTIRILRVRDASLTEENPAACERIDPGQTCITRMD
                     LENLGNLEDSFTIHVTESPPWASVTTSSEVYNVSESGTQTAIPIMITIDEGAEALQTG
                     SLEIEVKSGGITHATITRNIQVAPVIDWTLITTQDGREGNNVIISITIRNDGNDFDGV
                     MVALDMDVDAVFGLIPPEDALHSEADHVRYFECRDIEEGMNMTFQAYSSVPEGFTGNG
                     TATLELTVQSIRDPQQNFSASTNIDYTAIIQNPIEDEEPSAIAVAFENSLIFLLEWNG
                     LVMTVIVVAVGSILLNQALVRRQKDLERMKRENTPEIESKETVSDWKKRFSERSTGAR
                     ESVISPEVESDTFVESFRSKSKRSVESPRMVDQGKLSQASDILDRHEEEESIAAADNL
                     VLELLDEGDSTDTVFDLDL"
     gene            1596..2366
                     /locus_tag="HA345_04985"
                     /pseudo
     CDS             1596..2366
                     /locus_tag="HA345_04985"
                     /inference="COORDINATES: protein motif:HMM:NF000599.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
     gene            2356..>2889
                     /gene="gltX"
                     /locus_tag="HA345_04990"
     CDS             2356..>2889
                     /gene="gltX"
                     /locus_tag="HA345_04990"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF012951.1"
                     /note="Charges one glutamine molecule and pairs it to its
                     corresponding RNA trinucleotide during protein
                     translation; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HIH84745.1"
                     /translation="MTSDLDDPEVAKAIRKFALQNALEYDGAGEMKSVLGRMFGARPN
                     LKKHARDLVGLIQNAVDEANKLANEQGLEHVRVLLEEEAPEALEKRVKERREGLRPLD
                     GEPTGVVLRFAPNPNGPMSLGHSRGVVINSEFARMHEGEVILTFDDTDTKRKPPSIKA
                     YDTIAKEFEWITGRAPDR"
BASE COUNT          840 a          692 c          717 g          640 t
ORIGIN      
        1 tcacgataga ggttgaacct gtatccggta tcgaaatcgt gagtattgat gcagaagcta
       61 cgattgaccc cggacacaaa cttcgactcc cggttgaggt acggaatctt ggaaatcgcc
      121 ctgtaagcat ccacctagat attctggcta ctgacgctca aggaaccccg ttaaccgata
      181 cacctccaac acacttcctc tactccagtg gttgggcagt tggcgtcttc gacgaataca
      241 agattgcgaa tcttgcacca aatgaaagcg gtgtggccat tcttgaatat gcagcgccat
      301 ttgatgctga aggggaaatc cacattcgag tacttgctca aggattggat gacccattta
      361 ctattcttga agagaatcaa actattcgaa ttcttagagt cagagacgca tcattgaccg
      421 aagagaatcc ggctgcttgc gaacgcatcg accctggaca gacctgtatc acaagaatgg
      481 atttggagaa tcttggaaac ttggaggact cgttcacgat acatgtcaca gagtccccgc
      541 catgggctag tgtgacaact tcttctgaag tatacaatgt gagtgaatct gggactcaaa
      601 cagcgattcc gattatgatt actatcgatg aaggtgcaga ggccctacag acaggaagcc
      661 tagaaatcga ggtcaaatca ggggggatca cacacgccac catcacacgg aatatccaag
      721 ttgctcccgt aattgactgg acactcatca caacacagga tggaagagag gggaataacg
      781 tcattatctc aattacaatt cgtaacgacg ggaatgattt cgatggagtc atggttgcat
      841 tagacatgga cgtagatgct gttttcggcc tcatcccccc tgaagatgcc cttcattccg
      901 aagcggacca tgtccgctac ttcgaatgta gagatattga agaaggaatg aacatgacat
      961 ttcaggccta ttctagcgtc cctgaaggat tcactgggaa tggaactgcg acactagagt
     1021 tgactgtgca gagtattcgt gacccacaac agaatttctc ggcttcaaca aatattgact
     1081 acacggccat cattcagaac cccatagagg atgaagaacc ttctgcaatc gctgtagcat
     1141 tcgagaattc actaattttc ttgcttgaat ggaatggact cgtgatgaca gtaatcgtcg
     1201 tagcagttgg ttccattctg ctaaaccagg ctctcgttcg tcgacagaag gaccttgaac
     1261 ggatgaagag ggaaaatact cctgaaatcg aatccaagga gacagtttca gattggaaaa
     1321 aacggttctc tgagcggagc acaggggcgc gagaaagcgt catatcccca gaggtggagt
     1381 cagatacctt tgtcgaatcc ttccgttcaa aatccaaacg ttctgtagaa tctcctcgga
     1441 tggtggatca aggtaaacta tcgcaggcta gcgatatcct agatcggcat gaggaggagg
     1501 agagtatcgc cgcagcggac aacctagtgc tcgaactctt agatgaggga gatagcaccg
     1561 acacggtctt cgacctagac ctatgagtca cacacatgat cgtaggtgct gatgaggctg
     1621 gacgtggccc ggtactcggc cccctagtag tcgctgctgt cgccataccc gttgctgacc
     1681 ttcagcgact aatcgacctc ggcgtagatg attcaaaggc actttcacct aaaaaacggg
     1741 aagaactgag tcaaataatc catgaagagc cgacttggca ggtttctatc atcgaatgtt
     1801 ccccagaacg aatcgattta accatggaaa caaaaactct caacgatcta gaagtcgacc
     1861 tctttggtga agcaatcaat ggtttggaaa tcgaacgcat cgaagaacta atcctcgacg
     1921 cctgcgacac aaatgaagct cgattcggac ggaatgtcac ttcaagaata tctagtatca
     1981 aagtagttga ggcagtcatt tccaaacatg gagcagacgc agataatccg gttgctggtg
     2041 cggcatcaat cgtagccaag gtacatcgag acaaagtcat cgaatctatc gctaaagata
     2101 gaggattcaa tgttggttca ggctacccct ccgaccccaa cactcgatcg gtgctgccta
     2161 tacttctctc acaggaacaa ccggatcagg atcttaggtg gggctggaag acagtaaagc
     2221 gacaatggtc cgacttgggc aggggacttc ctccaaaacg ttcagacttc atagagggac
     2281 gccgacaatc acgaatcgac caatggtctt cggcaagcgt caagagcgaa gccgacacat
     2341 cgagggatga tagcgatgac ttctgatctt gacgacccgg aagtcgcgaa ggcgattcgg
     2401 aagttcgctc tccagaatgc actcgagtat gatggagccg gcgagatgaa atctgtgctc
     2461 ggccgaatgt tcggtgcacg ccccaatctc aagaagcatg cacgggacct tgtgggccta
     2521 atccagaacg ctgttgacga agctaacaaa ctggcgaatg aacaaggcct cgaacatgtc
     2581 agagttctgc tcgaagaaga ggcccctgaa gcattagaaa agagagtcaa ggaacggcgt
     2641 gaaggcctcc gtcctctcga tggagaacca actggagtgg tgctccgatt cgcacctaat
     2701 ccgaatggac caatgtccct aggacatagc cgaggagttg tgattaacag cgaatttgcc
     2761 agaatgcatg agggcgaagt tatcttgaca ttcgacgata ccgacacaaa gagaaaacca
     2821 ccttcaatca aagcctacga caccatcgca aaagagttcg aatggattac tggccgcgca
     2881 ccagataga
//
LOCUS       DUKB01000151           12377 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_38237, whole genome shotgun sequence.
ACCESSION   DUKB01000151 DUKB01000000
VERSION     DUKB01000151.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12377)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12377)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12377
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_38237"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..561
                     /locus_tag="HA345_04995"
     CDS             <1..561
                     /locus_tag="HA345_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019178145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1297 domain-containing protein"
                     /protein_id="HIH84746.1"
                     /translation="DFTIQEYVLGTRYYFQFFFDPLPDDGYQVDGIGSKEGQKIGRLE
                     LMSIDRRDEANVDEFYKLGSLRDLRDMGLEPSFVVTGNTPAVLRESLLPEAFRMGEGA
                     VAASMELKGAEQGMIGPFCLETIVTDKLEFRVFEVSARIVAGSNVAVGGSPYSDINEP
                     GISTGQRIARCIRKAIQKDRLLDIVS"
     gene            complement(567..2693)
                     /locus_tag="HA345_05000"
     CDS             complement(567..2693)
                     /locus_tag="HA345_05000"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017482.1,HMM:NF017633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding domain-containing protein"
                     /protein_id="HIH84747.1"
                     /translation="MREQSSSFDIARMVVELRAHIGARVRKAYHPHWEQVMLRLNSKT
                     DGASDLVIVRGRRLYLSDRDRPMPMSPSPFAMVIRKYLNNGRLVDVTQHGFDRILTLH
                     VDTAAGIHRLVIEMFREGNVILLNPEGVIIQPLTSTEYASRTLKRGEVYEWPPAQVDP
                     RDLDADGFSEILADSDADVVRTLAAKVNLGRGYANAICAATGIDPSMPISKLRTDEKD
                     EIMRVLTKMLETIDSIGAHGWAKDAESLNVIASGVTTGEMPPYLEVAPVALAHMDEAL
                     HIEHASLSAAVDAWWGAHDSAAYARREMEKMVEAGEAEETAGSRLGRRAVQQEQAIGR
                     FHEKAGKAQNVAAMITENWEHVNSLLVQIRRAVEQQGWSDVRAAVKGVEWIQSVDPAK
                     RTMQAFLPDEEGLPGIRVELYVDETVHQNSQRHFTVARTQKDKAKGAVKALEDTERKK
                     RKEEKQRAKDEASGRVGRVKRSKRLWFERHRWTMLSDGRLMVGGRDARGNDTVVKKHL
                     GKEDIYVHADLHGAPSCSIRIAEGFQSDSAPNPTLPKHVPSLRLTQSPDFGSPNEMIL
                     EEAAQMAVCWSRAWGGGGGAATAYHVGSNQVSKTAETGESLGRGAFVIRGQRNWHRNM
                     STEISLGVVAINGIPLPLVGTPAAIESICERWIRLQPGTLKKENIANQIAKATGLLQD
                     DILGCLPPGNLQIVEDRQLIAVNKEA"
     gene            2794..3819
                     /locus_tag="HA345_05005"
     CDS             2794..3819
                     /locus_tag="HA345_05005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84748.1"
                     /translation="MRIPRGGLSILVDSDQPESVGENDPGVRCFWYRPMMRIENGRMR
                     PDTDWGIHVESDCLADMAASVAGLMEQDGVVNASDIALDLCFLFGFDHEYFHHCVDSA
                     WTGHLQRLIEIQGNLPSEAGKYREMYMNRIDDVVDNWLLVEETLANAHVVRDPTRLGG
                     LREAFLRYGLLPDPDEWKRGPYALWDRAAFDSRAFTALSHHVWMQYLKGEADPCGIWS
                     DIEKICHEGGNESGFAEIVDRIVDAVDPSDLDDDAHSHVLDRAGVSVPISFGGFQQGL
                     LRRLSVPLRVHGSQSGLIRSRFGKDNPDWPYGIIEGLYMHFRIAEVGGESDDPFGDDD
                     DEFELTP"
     gene            complement(3820..4305)
                     /locus_tag="HA345_05010"
     CDS             complement(3820..4305)
                     /locus_tag="HA345_05010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84749.1"
                     /translation="MRSLALALLGLFFLAGVASAEIYIPGPTRADMMDPNMTYEYTLP
                     EWMDSACQNNLACRYETVSDQDIVHTYYGLNQGGTMELIVIKGEAQTYNITVSSLEIV
                     PDKLEITTGSTLIFTVVENDTNANIILPWNPDDPEPESTPGFGAELILFAIAIALIRR
                     R"
     gene            complement(4375..5226)
                     /locus_tag="HA345_05015"
     CDS             complement(4375..5226)
                     /locus_tag="HA345_05015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84750.1"
                     /translation="MEDPLGTEAAYFDEKFVEGSGGWYLRTLVWTPKVMDDATKRPVV
                     VIPGWTSVVEGWIPLLADWVRHRPVIYIETREKNYTKSPDGHRERAIDHSIPNHALDM
                     DAIVRNLGHDPSECDWFASSLGSTSILHGLKEGTLSVRTAFLLAPNSEFKFPLWMVFL
                     SSFPWWVYPPIMRMIAIPYMRWKVKEPGQKIRYTRTMRNADMRRLKLSSRSNRSYSVW
                     EGLQKVVEPIAVCVAKSDVIHAHDDAIRIAECLDNGELIEVPSNQFAHEADIRPIIED
                     WITRATE"
     gene            complement(5273..6466)
                     /locus_tag="HA345_05020"
     CDS             complement(5273..6466)
                     /locus_tag="HA345_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84751.1"
                     /translation="MDNQLTDIIEIRSHLEIPARLEILMDSDSDAIEAFQKALLEAQD
                     NSGSNQILNDVSDGFSNSPQVFSGSVSPGDSTSTQSNSSFFTVNEEKENSSLPPWALF
                     MMGMIVLPIITGLISFTLIGTVEFTDDWREYSTGDAIFNENVTIQDEIYYVHEFHLGD
                     GFGDELAGNSGEWEIFAEGQLGNDTWISSAIIRGDDDVQYADMAGDDDGNLWYKMEIG
                     WTNRGIGWNSYYGGYCEWEGNDLEDDDVRWWCKYEVDDEEWDDWWYYCEHHDSDWHCT
                     DDFDQREAHKDSAEENMWAESGEDTIVYIKLDGDEVDIATKNSEAPRWVGYYGGEDGE
                     SDTTRDIIETLAFVIWPISFIGGIIWGFATDKKPFAYGIMAAGVLSTVLPFVGFFLLL
                     ILFGF"
     gene            complement(6451..7995)
                     /locus_tag="HA345_05025"
     CDS             complement(6451..7995)
                     /locus_tag="HA345_05025"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012514.1,HMM:NF012955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84752.1"
                     /translation="MDEAPEGMVMPEARVATPRESTSILITRNGSEGPEVLLAHRIPT
                     LRAFADFWALPGGGIRRNDMEAAASVKGLDQLEDDWPAVYAAILRETAEEVGLAIGDG
                     EIERVSMALRHMIIEDSSAWNSAVAKGVISASPEKITHIGTRTTPPFSPLRFRNRFMH
                     VHLNDGAPEPELLDIGSEFDELRWMHPAEAVKVWKTGNMLTAPPIVTLLRDVAEALEA
                     NDDDIHAAMESMANEPKSGEHRIELAPNIECVPLRTATLPPATHTNCFILGEQGGERL
                     IIDPAARTSEELAYLQRRIHGIEEDGGTIIATIFTHRHQDHIGDLSKIAEMYTAPIWA
                     TPETLAEIQPSESNRVLNEGDIISLNGPSGEMKWTVHVTPGHCPGHICLASNRYLVSG
                     DLAVMVGTILVPSSDGDMDAYIDSLQRMRALNSEILFPAHGPFTHRPEKLLDRYIKHR
                     IGRHERVLEAVTSGLSSIEEIANHAYSDTPDANPILKVDQTRSHLSSHESAGLVRMEN
                     GKWIIN"
     gene            complement(8032..9357)
                     /locus_tag="HA345_05030"
     CDS             complement(8032..9357)
                     /locus_tag="HA345_05030"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HIH84753.1"
                     /translation="MTDEGQRSPLFILFLVVLIDMIGFTLVIPFLTYFVQDLAQADGF
                     IDMSSRDWWVGIVLASYTLGQFLFTPLLGSLSDRVGRRPILMFGLVCNTIFLIAFGLA
                     SALWMAIAVRFLAGAGNGNLAVTRAYIGDISTREQLPARMGMIGASFGLGFMIGPFVG
                     GILTDPASAFGGPFATDWWVAHPYFLPCLTAGLLSAVSFLLAIRMLPESLPKEKRSQE
                     GSQQGLKMVLRNLVGVRDLSPNVRRLIFVNATFLLAFTMMHTTFILFTAMPIENGGLG
                     YDERMNGYIFAYVGLVGAIVQGGLIRPLTKRYDVRNIMVIGIVLTAIGLGWIPYLQPT
                     PFAIGLLAMTFIATGNGFFQPTQSTLITTEARFNKLDLGRVMGAQEGYGALSRIIGPV
                     LAAFIWAATVDGTGLWTYHTVFRIAGLIAILGVFIQWGIQRIEEDDSEE"
     gene            9505..9954
                     /locus_tag="HA345_05035"
     CDS             9505..9954
                     /locus_tag="HA345_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010098201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 domain-containing protein"
                     /protein_id="HIH84754.1"
                     /translation="MDEPLEANPSVDNDPHSVDLNRSVVNRIFWFVSGLISMIVGLIG
                     IPVPGLPTTPLMILAAACFARSNQRFYDWIINNKLFGHHVKNYREGKGIPKKIKPIIL
                     LTLWTFVLFAVLVAIPDSAPMISKYSTLILAVIGTLFILRIPGFEEA"
     gene            complement(9971..10255)
                     /locus_tag="HA345_05040"
     CDS             complement(9971..10255)
                     /locus_tag="HA345_05040"
                     /inference="COORDINATES: protein motif:HMM:NF012964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HIH84755.1"
                     /translation="MGPTKWLSPSTTGTVEKLAKSGIKNLVIVSPAFVADGLETLEEL
                     EIEIKDEFIEAGGKSVRVVPCLNDRSDWITGLSGLIAKSFARTQLPQISE"
     gene            complement(10201..11157)
                     /locus_tag="HA345_05045"
     CDS             complement(10201..11157)
                     /locus_tag="HA345_05045"
                     /inference="COORDINATES: protein motif:HMM:NF012711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HIH84756.1"
                     /translation="MLTLIDPLKRALQIRPNALAFIDGEREVTFAEFDQRCGKLVGAL
                     RALGARAGARVAILANNSSQYFEAYIGIPAGGMVVVPLNTRHATPELVYALKDSGANI
                     LITDRTDVGELADVVEHVIMLPDAYETLLATVEPAELGEGVAETDLAGLFYTGGTTGA
                     SKGVMLTHRNLIANAQHWLAMVPQNEHDRSLVMAPMFHAAGSNGILAAIWQGALQVPL
                     GTFDPSAVLDLIEKHRINITLGVPSMLAAIAEEQHANPRDVSSLDVLIHGGSPIATEV
                     VRRSCSAFPSTQLIEVYGATATRVDWDLLNGLVHRPLELLKN"
     gene            complement(11223..>12377)
                     /locus_tag="HA345_05050"
     CDS             complement(11223..>12377)
                     /locus_tag="HA345_05050"
                     /inference="COORDINATES: protein motif:HMM:NF014564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HIH84757.1"
                     /translation="TRALAGPFGAGLLADLGANVIKVEPPSGDGYRNIPPFLPDHARP
                     HEERKAGTDFGAPFAAVNRNKRSVCLDLKDEADKAVFLQLCDQADAVLENLRAGVMDR
                     LGLGYEVIAARNPKIVYACVRGFGDPRTGDSPYAHWPSLDAAAQSFGGLVHANDGLVT
                     PAIADIFPGTLMALGVVSAMHSAQRSGKGQFLDVGMYDAMMAFQKSAVAQYGFTGKPN
                     PAGLQRAMTLYPFDLFPTQDGRIAIAVGQPRHWDLLCAAMERADLMEDERSFSNEARL
                     ANVDWVEAQICAWTQTQTRAEIMAKLDGAIPIGPVQTMADIYADPHVQARGMLETCSP
                     AGDNPDIVLAASPIKFSVTPTTLYQRPPNLGEHNAEVLAEFGIERPERND"
BASE COUNT         2970 a         3130 c         3052 g         3225 t
ORIGIN      
        1 gatttcacga ttcaggaata tgttttaggt actcgatact atttccaatt cttctttgat
       61 ccacttccag atgacggcta tcaggttgat ggaataggtt cgaaggaggg acagaaaatt
      121 ggtcgacttg agcttatgag tatcgatcga cgtgatgagg cgaatgtcga cgagttctac
      181 aaactcggaa gtctccgtga tctccgggat atggggctcg aaccatcctt tgtagtcaca
      241 ggcaatactc ctgctgtctt acgtgaatct ctacttcccg aggcattccg tatgggtgag
      301 ggtgctgttg ctgcaagcat ggaacttaaa ggagcggagc aaggcatgat tggcccgttc
      361 tgtctcgaga caatcgttac tgacaagtta gaattcaggg tctttgaggt cagcgcacgg
      421 attgtcgcag gcagcaatgt cgctgtagga ggatctccct attccgacat caatgaaccg
      481 ggcataagta ccgggcagag aatcgctcga tgcatccgta aggcaataca aaaagatcga
      541 cttctagata tcgtatcttg atagattcag gcttctttgt tgacagcaat tagttgcctg
      601 tcctctacaa tttgtagatt tcctggaggt agacaaccaa ggatatcgtc ctgtaatagg
      661 ccggtagcct tggcgatttg gttagcaata ttctctttct tcagtgtccc tggttgcagc
      721 cgaatccacc tttcacagat ggactcgata gcagcaggag tgcctacgag tggaagcggt
      781 attccgttga ttgctactac ccccagacta atctcagtag acatgttacg atgccagttt
      841 cgctgccctc taatgacgaa agcccctcga ccaagtgact cgccggtctc agctgttttt
      901 gatacctgat tggaaccaac atggtatgcg gttgcagcac cacctccccc tccccaagct
      961 ctcgaccagc atactgccat ctgcgccgct tcttcgagaa tcatctcgtt tggagaaccg
     1021 aaatcgggag attgggtaag tcgtagggat gggacatgct taggaagtgt tggattagga
     1081 gctgaatcgc tttggaatcc ttctgcgata cgaatggaac aggatggtgc accatgtaga
     1141 tccgcgtgaa catagatgtc ctctttgccg agatgtttct tcacaacagt atcatttcca
     1201 cgtgcatcgc gcccaccgac cattagccga ccgtcactaa gcatcgtcca gcggtgacgt
     1261 tcgaaccaga gtctcttaga tcgttttaca cgacctacac gcccagaagc ctcgtctttt
     1321 gcacgttgtt tttcctcctt gcgcttcttc cgttccgtgt cttcgagcgc tttcaccgct
     1381 ccttttgcct tgtctttttg agttcgagca accgtgaaat ggcgctgaga gttttgatga
     1441 acagtctcgt caacgtacaa ctccacccgt atgccaggta atccctcttc gtcaggtagg
     1501 aatgcctgca ttgttctctt tgcagggtcg actgattgta tccattcaac gccctttaca
     1561 gctgcacgaa catcggacca accctgttgt tcaacagcac gacgaatttg tactagtagg
     1621 gagttcacat gttcccagtt ttcggtaatc atcgctgcaa cattctgggc cttcccggct
     1681 ttctcatgga aacgcccgat tgcctgttct tgctgtactg cacggcggcc cagccggctt
     1741 ccagcagtct cttccgcctc tcccgcttct accatttttt ccatctcgcg ccgagcatat
     1801 gctgcagaat cgtgtgcgcc ccaccatgca tcgactgcag ccgagaggct ggcgtgttca
     1861 atatgcaatg cttcatccat gtgagcgagg gccacaggtg caacctccag atatggtggc
     1921 atctctccgg tcgtgacgcc agatgcgatt acattgagag attcagcatc cttggcccat
     1981 ccatgtgcac cgatggaatc tatggtttcg agcatcttgg ttagaactct cataatttca
     2041 tccttctcat ctgtcctaag tttcgaaata ggcattgaag ggtcgatacc ggtcgccgca
     2101 cagattgcat tggcgtatcc acggcctaga ttcacctttg ctgcaagtgt ccgtacgacg
     2161 tcagcatcac tgtctgcgag aatctcacta aatccatcag cgtcaagatc acgtgggtcg
     2221 acttgtgcag ggggccattc gtatacttct ccacgtttga gtgtccgaga ggcatattcc
     2281 gtcgaagtga gtggttggat aatcactcct tcaggattga gaagaatgac gtttccttca
     2341 cggaacattt caatcactag acggtggata ccagcggcgg tatcgacgtg cagggttaaa
     2401 attcgatcaa atccatgctg agttacatca acgagtcggc cattgttcag atatttcctg
     2461 attaccattg cgaacggtga gggcgacatt ggcatcgggc ggtcacgatc agataggtag
     2521 aggcgtcgtc cacgtacgat gacgagatca gaagcaccat ctgttttcga gttcagtcgt
     2581 agcatgactt gctcccagtg aggatggtat gccttacgga ctcgtgcacc tatgtgggct
     2641 ctgagttcca ctaccatacg agcgatatcg aaactcgacg attgctcacg catggggacc
     2701 gccaagtgaa ggagccttgt cgacccttca atagggaatc gcttgaagaa ccgtggaata
     2761 tgcttcatgt tcgtgcaacc gggaatcccc acgatgcgaa tcccgcgcgg cgggttgtct
     2821 atactagtag attcagatca accagaatct gtgggggaga acgatccagg cgtacgttgt
     2881 ttctggtatc gaccaatgat gcggattgag aacggacgca tgcgcccaga tacagattgg
     2941 ggtattcatg tggaatcaga ttgtcttgca gatatggcgg ccagtgtagc gggcctgatg
     3001 gagcaagacg gtgttgtgaa tgcttcagat attgctcttg acctctgttt cctgtttggt
     3061 ttcgatcacg aatacttcca tcactgcgtt gattcagcgt ggacaggcca cctccagcgt
     3121 ctgattgaga tacagggtaa tctaccttct gaagcaggaa aatatcgaga gatgtacatg
     3181 aatcgaatcg acgatgtagt ggataattgg cttcttgttg aggaaacact agcgaatgct
     3241 catgttgttc gagatccgac ccgtcttggc ggtcttcgtg aagccttcct gcggtatggt
     3301 ctactccctg atcccgatga gtggaagcgt ggcccgtatg cactctggga tcgtgcggct
     3361 ttcgattcac gtgccttcac tgccctcagt caccacgtgt ggatgcagta tctcaaaggc
     3421 gaagcagatc cttgtggaat ttggtctgat attgagaaaa tatgccatga gggtggaaat
     3481 gaatccggat tcgctgagat tgtggatcgt attgtggatg ccgtagatcc gtcagatctt
     3541 gatgatgatg cacatagtca tgtgctggat cgtgctggag taagtgtccc catttccttt
     3601 ggtggtttcc agcagggact cttgcgtagg cttagcgttc ctctccgggt tcatggtagt
     3661 caatcaggat tgattcgatc ccgttttgga aaggataatc cggattggcc ctatggaatc
     3721 attgaggggc tgtatatgca ctttcgaatt gctgaggtag gcggagaatc cgatgatcca
     3781 ttcggtgatg atgacgatga gttcgaactc actccgtgat tagcgtcgac gaattagtgc
     3841 aatcgcaata gcgaaaagaa tgagctccgc accaaatcct ggcgtggatt caggttcagg
     3901 atcatctgga ttccaaggga ggatgatatt ggcattagta tcattctcaa ctacggtgaa
     3961 gatgagtgtt gatccagtgg taatttctaa tttgtctgga acaatctcca aactactcac
     4021 ggtgatgttg taggtctggg cttcaccctt gatgacgatg agttccatgg tacctccctg
     4081 gttcagacca tagtaggtgt gtacgatatc ttggtcactc acggtttcat atcggcaagc
     4141 tagattgttc tgacaagcgg aatccatcca ttcaggaagt gtgtactcgt atgtcatgtt
     4201 ggggtccatc atgtcagccc tagtaggtcc cgggatgtag atctccgcag atgcgacacc
     4261 tgcaaggaag aagaggccta gtagggccag tgcaaggcta cgcatacccc tctcctgccc
     4321 gtcccagttc ttgcctttgt cggagattac gataggtatg gattcaattt tgagtcattc
     4381 ggtcgcacga gtaatccaat cttcgataat tggacgaata tccgcttcat gagcgaattg
     4441 gttactgggc acctctatta attccccatt atcgagacat tctgcaatac gaattgcatc
     4501 atcatgtgca tgtatgacat ctgattttgc aacacagacg gcaatcggtt ccaccacctt
     4561 ttgaagtcct tcccaaaccg agtaggagcg attcgaacgc gatgatagtt tgagtcgacg
     4621 catgtctgca ttacgcatcg tacgagtgta acggatcttc tgaccaggtt ctttcacctt
     4681 ccaccgcatg tagggtattg caatcattcg cattattggg ggatacaccc accatggaaa
     4741 gctggaaaga aaaaccatcc acaatggaaa tttgaactct gaatttggtg cgagaaggaa
     4801 ggcagttcgt actgaaagcg tcccctcttt caacccgtga agtatactcg ttgaacctag
     4861 cgaggaggca aaccaatcac actcagatgg atcgtggcca aggttgcgaa ctatggcgtc
     4921 catgtctaat gcatgatttg gtatcgagtg gtctattgct cgttcacgat gtccatctgg
     4981 actcttagtg tagttctttt ctcgggtttc gatgtatatg actgggcgat gccttaccca
     5041 atctgctaga agcggaatcc acccttcaac caccgaggtc catcctggaa taactaccac
     5101 tggacgcttt gttgcatcgt ccattacttt cggagtccat acaagggttc gaagatacca
     5161 ccctccactt ccttcgacaa atttctcgtc gaaataagca gcctctgtgc ccaacgggtc
     5221 ctccatggtt tagcaatatt agggggccaa atgatgctgc cggttttaga tttcagaatc
     5281 caaacagtat gagtaagagg aagaaaccca caaatggtag tactgtggac agcacacctg
     5341 cagccataat gccatacgcg aatggcttct tgtcagttgc gaacccccag ataatccctc
     5401 caataaatga aatcggccag attacaaagg ctagagtctc aataatatct cttgtagtat
     5461 cactctcgcc atcctccccc ccgtagtagc caacccatct cggagcttcg ctatttttag
     5521 tggcgatatc aacttcatca ccatcgagtt tgatgtagac gattgtatcc tctcccgatt
     5581 cagcccacat attttcttct gcagaatcct tgtgggcttc ccgctggtca aaatcgtcag
     5641 tgcaatgcca gtcggaatca tggtgctcac aataatacca ccagtcgtcc cattcctcgt
     5701 catccacctc atacttgcac caccatctga catcgtcatc ctccaagtcg tttccttccc
     5761 actcgcagta gccgccataa tagctgttcc aaccgatgcc gcgattagtc cacccaatct
     5821 ccattttata ccataaattt ccgtcatcat cccctgccat atcggcatat tgcacgtcat
     5881 cgtctcctct gattatggct gatgagatcc atgtgtcatt gcccaattga ccctcagcaa
     5941 agatttccca ctctccagaa tttcctgcta gttcgtcacc aaacccatct cctagatgga
     6001 attcatggac atagtagatt tcatcttgaa tcgtgacatt ttcattaaat atcgcatccc
     6061 ctgtcgaata ttcacgccaa tcatccgtga actcaaccgt tccaatcaga gtaaaactga
     6121 tgagtccagt gattattgga agtacaatca ttcccatcat gaagagtgcc caaggtggaa
     6181 gtgacgagtt ttccttttct tcattcactg taaaaaaaga tgaattcgat tgagtagacg
     6241 tcgaatcgcc tggagaaaca ctgccagaga atacttgtgg actattcgaa aatccatcag
     6301 agacatcatt tagaatttga tttgaaccag aattgtcctg ggcctctaag agcgcttttt
     6361 gaaacgcttc aatagcatca gaatcggaat ccatgagtat ctctaaacgt gcaggtattt
     6421 ccaaatgact cctaatttca atgatatctg ttaattgatt atccatttgc cattttccat
     6481 acgtacaagg cctgctgatt catgtgagga taggtgagat ctcgtttgat caaccttcag
     6541 aatcggattt gcatcaggtg tatcagaata cgcgtgattc gcaatttctt caatagagga
     6601 taaaccagag gttacagctt ctagaacacg ttcatggcgc ccgattcgat gtttgatgta
     6661 tcgatctagt agtttctctg ggcggtgggt aaatggacca tgtgctggaa acaatatctc
     6721 ggaattgagt gcacgcattc tctgtaggct atcgatgtag gcgtccatat caccatctga
     6781 acttggaaca aggatagtgc caaccatcac ggcgagatct ccagatacga ggtatcgatt
     6841 agatgcgaga cagatgtgac ctggacagtg acctggtgtg acatgcaccg tccatttcat
     6901 ctcgccactc gggccattga gtgagatgat atcgccttca ttcagcactc gattagattc
     6961 actgggctgt atctccgcca gtgtctcagg agttgcccat attggtgctg tatacatttc
     7021 tgcaatcttg gataagtcgc cgatatggtc ctgatgacga tgagtgaaga tagtcgcgat
     7081 gatggttcct ccatcttctt cgattccatg tattcgtcgt tggagatatg caagttcttc
     7141 agatgtcctc gctgcagggt caatgatgag tcgctcaccg ccttgttcac ctagaatgaa
     7201 acagttcgtg tgagttgcag gtggaagtgt tgcagttcgg agtgggacac actcgatatt
     7261 aggggcgagt tcaatgcggt gctctccaga tttcggttca tttgccatcg attccatggc
     7321 agcatggatg tcgtcatcat tcgcttcaag tgcttcagca acatctcgaa gtagtgtgac
     7381 aataggaggt gctgtgagca tatttccagt tttccagacc ttgacagctt cagcaggatg
     7441 catccatcgg agttcatcga actcgcttcc tatatcgagt aattcaggct caggggctcc
     7501 atcattgaga tggacatgca tgaatcgatt tctgaacctc agtggagaga acggtggtgt
     7561 tgtccgtgta ccgatgtgag tgattttttc tggtgacgcg gagattactc cctttgctac
     7621 cgctgaattc caggctgaag aatcttcgat tatcatatga cgtagtgcca tcgagacacg
     7681 ttctatttct ccgtcaccga tggctagccc tacctcctct gcggtctcgc gaagaattgc
     7741 cgcatagaca gcaggccaat cgtcctcaag ttgatcaaga cctttgacgg atgcagcggc
     7801 ttccatatcg ttccttctga tgccacctcc tggtagcgcc cagaagtcgg cgaaggctcg
     7861 aagggttggg atacggtggg cgagaaggac ttccggccct tcagatccgt tccgtgtgat
     7921 gagaatagac gtcgattctc gtggcgttgc aaccctcgcc tcgggcatga ccattccctc
     7981 gggggcttcg tccatggatg catcttatgg ctgagggcta tgaaaccgcg ctcattcctc
     8041 tgagtcgtcc tcttcgatcc tttggatgcc ccattggatg aatactccta ggatggcgat
     8101 gagtcctgct atacggaaca ctgtgtggta ggtccacaat ccagtgccat cgacagtggc
     8161 agcccagatg aaggcagcaa ggacgggtcc gatgattctt gagagtgcac catatccctc
     8221 ttgagcgccc atgactctgc caagatcgag tttattgaat cgggcctccg tcgtgattaa
     8281 tgttgactgt gtgggttgga aaaatccatt tccagtagct atgaacgtca tagctaggag
     8341 tccgattgca aacggtgtag gttgtagata cggtatccat ccaaggccga tagccgtcag
     8401 aacgattcca attaccatga tattcctcac atcatatcgc tttgtgagtg ggcggattaa
     8461 tccgccttga acgatggctc ctactagacc aacgtatgcg aatatgtagc cgttcattcg
     8521 ttcatcgtag cctaaacctc cattttcgat tggcatggct gtgaacagaa taaacgtcgt
     8581 atgcatcatc gtgaaagcga gaagaaatgt ggcattgaca aagatcagcc gtcgaacgtt
     8641 tggagagagg tcccgaactc ccacaagatt ccttagaacc atcttgagac cttgctgact
     8701 cccttcttgg gatctcttct cttttggaag gctctctggg agcatacgaa ttgcaagtag
     8761 gaaggatact gcagatagta gacctgcggt gaggcacgga aggaagtatg ggtgggctac
     8821 ccaccaatcc gttgcgaacg gtccgccgaa ggcactagca gggtccgtta gaatgccacc
     8881 tacgaatgga ccaatcatga atccaaggcc gaatgaggcg ccaatcatgc ccattcgagc
     8941 gggtaattgt tctcttgtac tgatgtcacc aatgtaagca cgtgtgacgg caaggttgcc
     9001 attaccggcc cctgctaaga agcgtacagc gatagccatc cagagggcgg aagcaagacc
     9061 gaatgcgatg aggaatattg tgttgcatac aagcccaaac atcagaatcg gacgccgacc
     9121 gacccggtct gagagagagc caagaagcgg agtgaatagg aactgtccca atgtgtagga
     9181 tgcaagaaca atccctaccc accaatctct tgaactcata tctatgaagc catctgcctg
     9241 agctaaatct tgaacgaagt aggttaggaa tgggattacc agagtaaatc caatcatgtc
     9301 gattagtaca acaaggaaga ggatgaagag tggtgaccgt tgtccttcat ccgtcatgtc
     9361 gggacttcgg cgcgactgtc gtttgaaggg tccgcatcac agcgtgttga atacacggtt
     9421 acctacctgt gttgtcaaat tccattgccc tatgaatccc gacgatatac taccacttaa
     9481 gtggcaaaga tagagcacag ggatatggat gagccactag aggcgaatcc ctcagtcgat
     9541 aacgaccctc attctgtaga tttgaataga tctgtagtga atcgaatctt ttggttcgtt
     9601 tcgggtctaa tttcgatgat tgttggtttg attggaatac ctgtacctgg tctgcctaca
     9661 acaccactga tgattctggc agcagcgtgt ttcgcaaggt ccaatcaaag attctatgac
     9721 tggataatta acaacaaatt gtttggacat catgtgaaaa attaccgaga aggcaagggt
     9781 attccaaaga agattaaacc gattattctc ctaactttgt ggacttttgt actgtttgcg
     9841 gtattggttg cgattccgga ttcagcacca atgatatcga agtactctac cttgattttg
     9901 gcagttatcg ggaccctgtt tatcctcagg attccaggat ttgaagaagc ataggattct
     9961 aggaatcaac tcattcagat atttgcggaa gctgtgttct tgcgaatgat tttgcaatca
    10021 aaccacttag tccggtaatc cagtcacttc tgtcgttgag acatggaaca acacgcacac
    10081 tttttccacc ggcttcgata aattcatctt tgatttcgat ctctagttct tccaatgttt
    10141 ctaatccatc ggcgacaaat gcaggggaga caatcactag atttttgata ccacttttgg
    10201 ctaatttttc aacagttcca gtggtcgatg gactaagcca tttagtaggt cccaatcgac
    10261 tctggtagct gtggcaccgt aaacttcaat gagttgggtg gatggaaacg cgctgcaact
    10321 gcgccgaacg acctccgtag caataggcga gccgccgtgg atgagcacat caaggctgct
    10381 aacgtcgcga gggttcgcgt gctgctcttc ggcaattgcc gccaacattg agggcacgcc
    10441 aagggtgatg ttgatgcgat gtttttcgat taaatccagc accgcagagg gatcaaaggt
    10501 gccaagcggc acctgcaatg cgccctgcca aatcgcggcg aggatgccgt ttgaacccgc
    10561 agcgtggaac atgggtgcca tgaccaagga gcggtcgtgc tcgttctgcg gcaccatcgc
    10621 taaccaatgc tgcgcgttag cgattaagtt gcggtgggtc aacatcacac ccttgctcgc
    10681 ccctgtggtg ccaccggtgt agaacaggcc ggcaaggtct gtctctgcaa cgccctcgcc
    10741 caactccgca ggttcaacag tcgctaacaa ggtttcgtat gcatcgggca gcatgatcac
    10801 atgctcgacc acgtcggcta actcacccac gtcggtgcgg tccgtaatca aaatgttcgc
    10861 cccagagtct tttagcgcat acacaagctc aggtgtggca tgccgcgtat ttagaggcac
    10921 caccaccatg cccccagcgg gaatgccgat ataggcctca aaatactgtg agctgttgtt
    10981 cgccagaatg gcgacccggg cacctgcccg agcgcccaag gcgcgcagcg cgccgaccag
    11041 cttgccgcag cgctgatcaa actctgcaaa ggttacctca cgctcaccat cgatgaaggc
    11101 cagcgcgttt ggcctaattt gcagggcgcg ctttaatgga tcgatcagtg tcagcatcga
    11161 ttttttcctc ccgaaaacgt caacgctaaa tcatttgccg cgctgcgact agattccaaa
    11221 aatcaatcgt tccgctcagg tcgctcgata ccaaattccg ccagtacctc agcgttatgc
    11281 tcgccgagat ttggcggtcg ttggtacaac gtcgttggcg ttaccgaaaa cttaattgga
    11341 ctggccgcca agacgatatc cgggttgtcg ccggctggcg agcaagtttc caacataccc
    11401 cgcgcctgca catgagggtc ggcataaata tccgccatgg tttgcaccgg cccaatggga
    11461 atcgcgccat cgagtttcgc catgatctct gcccgagttt gggtttgtgt ccaagcgcag
    11521 atttgtgctt cgacccaatc cacattcgca agccgagctt cgttggaaaa actgcgttcg
    11581 tcttccatca aatccgcgcg ctccattgcc gcgcaaagca ggtcccaatg gcgaggctgg
    11641 ccgacggcaa tggcgatacg gccatcctgg gtaggaaaca aatcgaaggg gtatagcgtc
    11701 atcgcgcgct gcaaacccgc cgggtttggc ttgcccgtaa acccgtattg ggcaacagca
    11761 cttttctgaa aagccatcat ggcgtcatac atgcccacat cgagaaactg tcccttgccg
    11821 ctgcgctggg cgctatgcat ggctgacacc accccaagtg ccatcagcgt gccgggaaaa
    11881 atatcggcaa tggccggcgt taccaggcca tcgttcgcgt gcaccaagcc gccgaaactc
    11941 tgcgcagccg cgtcgaggct cggccagtgc gcataagggc tatcaccggt acgcggatca
    12001 ccaaagcccc gcacgcaggc atagacgatt tttggattcc tagcagcgat cacttcatag
    12061 cccagtccca gccgatccat cacgccagct cgcaggtttt ccagcaccgc atcggcctga
    12121 tcacacagct gcaagaacac ggctttgtcg gcctcgtcct taagatccaa gcacacactg
    12181 cgcttgttgc gattaaccgc tgcgaagggc gcaccgaaat ctgtgccggc ttttcgctct
    12241 tcgtgggggc gcgcatgatc cggcagaaac ggtggaatgt tgcgataacc atcgccagag
    12301 ggtggctcaa ccttaatgac attggcaccc aagtccgcca gcaggcccgc gccaaaaggc
    12361 ccggccagcg cccgcgt
//
LOCUS       DUKB01000152            5869 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_103712, whole genome shotgun sequence.
ACCESSION   DUKB01000152 DUKB01000000
VERSION     DUKB01000152.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5869)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5869)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5869
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_103712"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1518
                     /locus_tag="HA345_05055"
     CDS             <1..1518
                     /locus_tag="HA345_05055"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994019.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12-dependent ribonucleotide reductase"
                     /protein_id="HIH84758.1"
                     /translation="QFKSLAGGGMLKIINNGVKLALSELGYNDVEIEDIESYVMGTKS
                     IERCETVTRERLMKAGFTEAEFARVEDAIGGAYDIRGAFSPNSLGESFCTDILGLNQE
                     QIENPFFDVLSHIGFTSVEIDGANDHVFGRMTIEDAPHLKEEHLEVFDCATPGGKYGT
                     RSIAWPAHVRMMAAAQPFISGAISKTVNLPSDATIDDIRDVYNLSHSTMNKATAVYRD
                     QSKLSQPLMNKLVDTTSMDEIDENESATVTTEQAVEQVKLALPLPDQQAQPIAEAFVQ
                     NYIATRRPLPDVRESKVMKARVGGHTVYLSSSMYDDGRLGEIMLTTSKEGMAWRSLLN
                     QFAIAVSIGLQYGVPLDAFVKSFTFQKFEPSGMVVGGSGRVKMATSIVDYIFRELAIN
                     HLDREDLAHVTEEDLDTTSISRPESTPDGMSRTMGSQRNIQTTLDSVMNVQEPQEPEE
                     EPSTSSELSAEENAMRSARALGFTGDICTNCGGSQMVRNGTCLKCNECGETTGCS"
     gene            complement(1519..2772)
                     /locus_tag="HA345_05060"
     CDS             complement(1519..2772)
                     /locus_tag="HA345_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84759.1"
                     /translation="MALLWQTSHDLLTELVRIGVGHAPFPPPPHLFEGIPVIESAPDT
                     IAQQAITVDALDKAGFKRIIVTHLESERPDHVRRAIDEERALDRYILETRDDLADHFL
                     KERIVEWLRAGLDEITPDSDRWFWGMALFTGACLGRPSCIQEDGFHLLESLALGRPPG
                     RWQTRAAPGPHHLDWDGRDVEGESVEVHVDGAIAAAWLLDIVDSIGEDSPLPEAWWAE
                     IVNRSHLYVPLRMAERLDSKLTDNEWSSILIKIIPHLLRTDAPRAGAIVNAILANGDE
                     KRRIDIASLAERIVSESVSIGKTIIDASLKEDGDAAVIATSALPVLAHHDPIEFMIRA
                     MRASQHENPRVRRRFVDSGLRMAMQIDPIDEQGILVNLIKMDDETSQVRVKRFANEMA
                     RLNPTAGLRLVQRLAENGIEFTLSE"
     gene            complement(2808..4805)
                     /locus_tag="HA345_05065"
     CDS             complement(2808..4805)
                     /locus_tag="HA345_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HIH84760.1"
                     /translation="MTEVWPPESIRLDSDARVLFLTKNLDLIRQQLYNGLNLKMEDLD
                     IDDLLDDINTDVMTPAWVCFDHDPAKIADNAYAGLLHEGERVFNQGALKEGGFQVIVS
                     GHRKGTGSSRETAPQCERWSGIRIVIAASFAPIHERNNINLGQVMGNHQILERLQNGE
                     VIQLDEFTQKYDPVTRLILENGGILPFAKKLKDSQIELPAVSTEHRGMTMAEKIIAKK
                     VIGKTGVECYVSPGDAVLATVDGGYSHEFTTAQVHNFLAAEYGADYTLPNPPKFAVFE
                     DHLLYATGVPRFGPFADKIQTLRDLQVAFQQHTGVRDYSAKDGVSPGICHQVAREEFI
                     DVGDFIQATDSHTCMGGASNALTYGVGSTEYANLVHNQFAFVKVPESIRFDLIGSLNP
                     GCTAKDVILHILWRYAKHSDTLDRSMEFGGSGLASISMDERATLCNMATECSAKTGIC
                     DPDQLTIDWLLERRSDLDEEQIRNAFVFPDEDAVYHGGIHTIDLDKIRPMVAHPGDPD
                     KGIPSDPTNGAYIDDIGIVPIDIAYAGSCTAGKDDDFSYYAKVAKAAKDAGLKVADGV
                     ECYIQFGSGSVKQLSERMGWTALFEEVGIHLIDPGCGACIGAGPGISNDSDQVTISAI
                     NRNFQGRSGPGQLYLASPLTVMASAFMGYITAWRPEIFSKV"
     gene            4934..>5869
                     /locus_tag="HA345_05070"
     CDS             4934..>5869
                     /locus_tag="HA345_05070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015324667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HIH84761.1"
                     /translation="MRAIISSERNQMSDAQVEDIVKCPECGSRELDRDETRGEIVCSM
                     CGLVIEDNVIDQGAEWRVFSPEQGDQRARTGAPMTVMLHDKGLSTDIDWQNKDYSGKT
                     ISSRYRSQFYRMRKWQKRSRVSNATERNLAMALAELDRMASRLNLPKSIREAAAVNYK
                     RAVEARLIRGRSIEGVAAASLYAACRQCGNPRTLDEISTASRTGRKEIGRTYRFMVRE
                     LRMKIPHTTPEMYIPRFCSGLDLDAEVQSKAYELIQKAQEKELTSGRGPTGIAASIIY
                     IASVLCGKRRTQREVAEVAGVTEVTIRNRYKELIQN"
BASE COUNT         1587 a         1398 c         1321 g         1563 t
ORIGIN      
        1 cagttcaaat cccttgcagg tggaggaatg ttgaagatta tcaacaacgg cgtaaaactc
       61 gctctttcag aactcggtta caatgacgtc gagattgagg atatcgaatc ctatgttatg
      121 gggactaaga gcatcgaacg ttgtgagaca gtgacccgtg aacgattgat gaaggctgga
      181 tttaccgaag ctgaattcgc tcgagttgaa gatgccattg gaggagcgta cgatattcgt
      241 ggcgcattca gtcccaatag tttgggcgaa tccttctgca ctgatatcct cgggttgaat
      301 caagagcaaa ttgagaaccc cttctttgat gttctcagtc atatcgggtt cacttcagtt
      361 gagattgatg gcgctaacga ccatgtattc ggtcgcatga ccattgagga cgcacctcat
      421 ctaaaggaag aacatcttga ggtcttcgat tgtgcgactc cgggagggaa atatggtacc
      481 cgttctatcg catggcccgc tcacgttcgg atgatggcgg ctgcccaacc atttatctct
      541 ggcgcgattt caaagacagt aaatctccca tctgacgcta ctatcgatga tattcgcgac
      601 gtgtacaatc tctcacattc tacgatgaat aaggcaactg cagtatacag agatcagagt
      661 aagctatcac agccgttgat gaacaaactt gtagatacca cttcgatgga tgaaatagat
      721 gaaaatgaat cggctaccgt aaccactgaa caagcagttg agcaagttaa gttggccctg
      781 cctctacccg atcaacaggc acaaccgatt gcagaagcct ttgtccaaaa ttacattgca
      841 acacgccgac cactccctga tgtccgagaa tcaaaagtga tgaaggcacg tgttggaggg
      901 cataccgtct atctctcatc gagtatgtat gatgatggcc gccttggtga gattatgcta
      961 acaacttcga aggaaggaat ggcttggcgc tcattgttga atcagtttgc aatcgcggtt
     1021 tcaattggcc tccagtatgg agtccccctc gatgctttcg tcaagtcatt caccttccag
     1081 aagtttgagc ctagtggcat ggtggtcggg gggtcaggtc gagtgaagat ggccacatcc
     1141 atcgtggatt atatcttcag agaattagcc atcaatcatt tggatcgtga ggatttagct
     1201 catgtaactg aggaagatct tgatacgact tccattagcc gccctgagtc tacaccagat
     1261 ggaatgtctc gcaccatggg ttctcagcgc aacatccaga ccacgttgga tagtgtgatg
     1321 aatgtccagg aacctcagga gccagaagag gagccatcaa ccagttctga attgagtgca
     1381 gaagagaatg cgatgcgaag cgctcgcgca ctcggtttta caggagatat ctgcacgaat
     1441 tgtggaggaa gtcagatggt tcgtaatgga acctgcctca agtgcaatga gtgcggtgag
     1501 actaccggct gttcctgatt attctgaaag ggtaaattca atcccatttt cggcaagacg
     1561 ttggactaat cttaatccag ccgtcggatt gagtcgagcc atttcgtttg caaaacgctt
     1621 gactcgtact tgggaagttt cgtcatccat cttaatcaaa ttcactaaaa tcccttgttc
     1681 atcaatcgga tcaatctgca ttgccattct caagcctgaa tctacaaacc gccttctgac
     1741 tctaggattc tcatgctgac ttgctctcat cgctcgaatc atgaattcga ttggatcatg
     1801 atgggccaga acaggtagag cactagttgc aattactgcg gcatctccat cttctttgag
     1861 actggcatca ataatcgtct tcccaatact gactgattcc gaaacgattc tttcagcaag
     1921 tgaagcgata tcgatgcgcc ttttctcatc tccatttgca agtattgcgt ttacaatcgc
     1981 tcctgcacgg ggtgcatctg ttcgcaaaag gtgaggaata attttgatca gaatagatga
     2041 ccattcgttg tctgttaact ttgaatcaag cctctctgcc attctgagcg ggacatacaa
     2101 atgactccgg ttgacgattt ctgcccacca tgcttctgga agcggactat cttccccaat
     2161 tgaatcaacg atatcgagta accaagctgc tgcaatagca ccgtcgacat gtacttctac
     2221 agattctccc tccacatccc ggccatccca atcgagatga tgtggtcctg gtgcagctct
     2281 cgtttgccac cttccaggag gccgcccgag agcgagtgat tctaggagat ggaatccatc
     2341 ttcttggatg cacgaaggcc gtccgagaca ggctcctgtg aacagtgcca taccccaaaa
     2401 ccaccggtct gaatcaggtg tgatttcatc gagaccggct cgtaaccact cgacaattct
     2461 ctctttgaga aaatggtctg ctagatcgtc tcgtgtctca aggatatatc gatcgagagc
     2521 tctctcttca tcgattgcac gccgcacatg atctggcctt tcagattcga gatgagtgac
     2581 gattattcgt ttgaagcctg ctttgtccaa cgcatcgacc gtgatggctt gctgtgcaat
     2641 agtatctgga gcggactcaa ttacaggaat tccttcaaag agatgtggcg gtggaggaaa
     2701 aggagcatgg cccactccaa tccttacaag ctccgttaac aggtcatgag atgtctgcca
     2761 gagtagtgcc atcggctctc ttctatccaa ttcaatccct tctctggtca aacttttgaa
     2821 aagatttcag ggcgccatgc tgttatgtat cccatgaatg cactagccat gacagtcaga
     2881 ggactggcaa gatacaactg acctgggcca gagcggccct gaaagttacg attaatcgca
     2941 gatatggtga cttgatctga atcattactg ataccaggcc ctgctccgat gcaagcacca
     3001 caaccaggat ctatgaggtg aataccaact tcttcaaaga gcgcagtcca ccccatcctc
     3061 tcagaaagtt gcttgaccga tcccgatccg aattgaatgt agcattcaac accatctgca
     3121 actttcaagc ctgcatcttt agcagccttt gcaacttttg cataatatga gaaatcatca
     3181 tctttgcctg cagtacaaga tccagcatag gcgatgtcga taggaacaat tccgatatca
     3241 tcgatgtaag ccccattagt tgggtccgat ggaattcctt tgtcggggtc tcctggatga
     3301 gctaccatcg gtcgaatttt gtcaagatca atggtatgta ttcctccatg gtatacagca
     3361 tcctcatcag ggaacacaaa cgcatttcta atctgttctt catccaaatc acttcgtcgc
     3421 tccaacaacc aatcgatagt caattgatca ggatcacaaa tcccggtctt ggcactacat
     3481 tcagtagcca tgttgcatag cgtcgctcgc tcatccattg agatagaagc aagtcctgat
     3541 ccaccgaatt ccatcgaacg atcaagtgta tcagagtgtt ttgcataacg ccatagaatg
     3601 tgaagaatga catctttagc tgtacatcca gggtttaaac tccctatcaa atcgaaacgg
     3661 atgctttcag gcactttgac gaaagcaaac tgattgtgaa ctaaatttgc atattctgtt
     3721 gaacccacgc cataagtcaa cgcatttgag gcgcccccca tgcaagtgtg actatctgta
     3781 gcttgaatga aatcaccaac atcgatgaat tcctctcggg ctacttggtg gcaaattcct
     3841 gggctaacac catctttggc tgagtaatcg cgaacaccgg tatgctgttg gaatgctact
     3901 tgtaaatctc gtaatgtttg aattttatcg gcaaacggcc caaatcttgg aacacctgtt
     3961 gcatagagta aatgatcttc aaacacagca aactttggcg gatttggcaa cgtataatcc
     4021 gcaccatatt cggctgctag gaaattatga acttgagcag ttgtaaactc atgactgtag
     4081 cctccgtcga ctgttgccaa cactgcatca cctggagaca catagcattc aacccccgtt
     4141 tttccaatca ccttctttgc aataattttc tcagccattg tcatacctcg gtgctcagta
     4201 gaaacggctg gcaactcgat ttgactatct ttcaatttct tggcaaaggg aagaatccca
     4261 ccattctcta gaattaatcg agtgacggga tcatattttt gtgtgaattc atcgagttga
     4321 attacttctc cattttgcaa tctctcaagt atctgatgat tacccatcac ttgcccgaga
     4381 ttgatgttgt ttcgttcatg aattggagcg aacgaggcag caatcacaat tcgaattcca
     4441 gaccaccgct cacactgtgg tgcagtttca cgactacttc cagtaccttt tcgatgccca
     4501 ctaacaatta cttggaaacc cccttctttt agggcccctt gattgaaaac acgttcacct
     4561 tcatgcagta ggccagcata tgcattgtca gcaatttttg caggatcatg atcgaaacag
     4621 acccatgctg gcgtcatcac atctgtgttg atatcatcta acagatcatc gatgtcgaga
     4681 tcctccattt tgagattcaa accattgtac aactgttgac gaattagatc gagattttta
     4741 gtcagaaaca ggacacgtgc atctgagtct agcctgatcg attcaggggg ccagacctca
     4801 gtcacgtaat ttcaccagtt gcaccatagg ttcagcctat ttgaccatta gccgttgtta
     4861 atgacctatt ttttaactta attcaatcta aaatacacca aaaaagaacc attaggattt
     4921 aaatacctta gccatccgag caataatatc ttcggagagg aatcaaatgt ctgatgcaca
     4981 agtggaagat atcgtcaaat gcccagaatg tggtagcaga gaactagatc gcgatgagac
     5041 gcggggagaa atcgtgtgct caatgtgcgg cctggtgatt gaggacaatg ttatcgatca
     5101 gggagccgaa tggcgtgttt tcagtcctga acaaggagat cagagggcta ggactggagc
     5161 acctatgact gtgatgcttc acgacaaagg tctctctact gacatcgatt ggcagaataa
     5221 ggactactct ggtaaaacaa tctcttctcg atatcggagt caattttatc gcatgagaaa
     5281 gtggcagaag agatcacgtg tttcgaacgc gaccgagaga aaccttgcta tggctctcgc
     5341 agaactcgat cgaatggcta gccgtttgaa ccttccaaaa tcgattcgtg aagctgcagc
     5401 tgtcaactat aagcgtgcag tagaagcccg tcttattcgc ggacgttcca tcgaaggcgt
     5461 cgctgcagcc agtctttatg cagcctgtag acagtgtgga aacccacgaa cacttgacga
     5521 aataagcaca gcatccagga caggccggaa agagattggc cgtacttacc gttttatggt
     5581 cagagaactt cgaatgaaga ttcctcatac gactccagag atgtatatcc cacgattctg
     5641 ttcaggtctt gatctcgatg cagaagtgca atcaaaagcg tatgaattga ttcagaaggc
     5701 tcaggaaaag gagttgacta gtgggcgagg tcctacggga atcgctgcct ccattattta
     5761 catcgcttca gtcctctgtg gtaagcgccg tactcagcgt gaagtcgcag aagttgccgg
     5821 agttactgag gtcacaattc ggaatcggta caaggaattg attcagaat
//
LOCUS       DUKB01000153            6099 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_391403, whole genome shotgun sequence.
ACCESSION   DUKB01000153 DUKB01000000
VERSION     DUKB01000153.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6099)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6099)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6099
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_391403"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..501)
                     /locus_tag="HA345_05075"
     CDS             complement(<1..501)
                     /locus_tag="HA345_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HIH84762.1"
                     /translation="MDEHGPKSPVSGMPIRDWLKDRRRIGMQPGLEATMTMLARLDMP
                     HMHFPCVHIAGSNGKGTTASHLANALTLGGNMVGLFTSPHLCHVEERIRVDGKLIDPK
                     QLDKALHAIRTLSTKAPAIEISYFETLFLAAMIIFRSVGVDRAVIETGLGGRLDATRA
                     CIADLTI"
     gene            546..2294
                     /locus_tag="HA345_05080"
     CDS             546..2294
                     /locus_tag="HA345_05080"
                     /inference="COORDINATES: protein motif:HMM:NF018279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84763.1"
                     /translation="MAPKEPSLSEAMEGQWASMIGMATMFVTTIGLAALIQPFYNHDA
                     TRAFGPGSETKLGFIILEGVFILVFTFVIIWLAKKNLQKFIQVGILLVLWIALTYSVV
                     PMAHLMMPIDDPTMDSTEAGSNAMMIPGLSTSDELVLTNGTAIMSVENVDGGMEALAG
                     GNIRWSFDIENQTGEPATSRDPTIVASHGSYVICDDTSWKRFDPDTGNILETYADDCT
                     VGFVDANGEAWHIVRQRILKIDPFKPIEEIDTPLDLNWMWVMPDGFNPNTILRIEHIG
                     TSHLLIVCESWAGVIEIPAERSEAGFEPMGIPTTWNMTLPAEGIFSAVAYGNTPGNAI
                     NDTAKSFSLFLGQPDGSVEALLVHSNGSVADNPDINLNEAFEGPIRGLMLADCCNGGS
                     NDLWIVDGNDLRILMGSSMTDRSRGTTIEGEGHVAMALIYRDSSNHDILMDGILLVDT
                     ELLNQSSPWVRADFVIPEGAPFEIGGVGVQYADIIGIGIATLLMIALIIRPEWYVVNT
                     AGILVGSGVSVMLGVSFVPWLVIIFMIGMAVYDHWAVNGSKHMLTLADTMIDLKLPIL
                     LVAPKDKDYSFLDEGD"
     gene            2298..2699
                     /locus_tag="HA345_05085"
     CDS             2298..2699
                     /locus_tag="HA345_05085"
                     /inference="COORDINATES: protein motif:HMM:NF018279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84764.1"
                     /translation="MTDRGVEAHVELPSESVEPISTNTPPKPVRKKKSADAMFMGLGD
                     VIFPGILVISSMTFLSGGAGFGIWSGPTMVAFGTLIGGLCGYMALMTKVARGKPQAGL
                     PLLNGGSILGYLISALLFIGPSALAFNITLF"
     gene            2746..4029
                     /gene="serS"
                     /locus_tag="HA345_05090"
     CDS             2746..4029
                     /gene="serS"
                     /locus_tag="HA345_05090"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011843655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HIH84765.1"
                     /translation="MLEMRLFRDAPEMIRADHDRRGLPHDMIDQVIALDTRWKDLRYQ
                     ADQLRKKRNESARGIAAAKKSGNKEEADRILSEVADIGAEIERLGNESDEAENERDRV
                     RMRVPNIMHESVPIGDDDTKNIERSMHGVMPKFAFEPKVHNDLIEENAWVDLGRAAKV
                     AGSRFYYLKGDLARLEMALQQHTIDFLVNRGFTLVQPPVMMNREAYEGVTDLSDFETV
                     MYGIQPDGFYAIATSEHPLTAMFMDEIIEPALLPIKMAGVSPCFRREVGAHGLSDKGI
                     WRVHQFTKVEQIIICRPEDSWNHHEELLQNCIDLWDGLGLHYRVVDICTGDMGTVAAK
                     KYDLEAWLPGAGAYKEVVSCSNCTDYQANRLKMRYRTAEGNTSVHTLNSTAVATSRAL
                     VAIMEQGQEEDGRVIIPEALRPYMGGMSHIEKSNW"
     gene            complement(4083..4583)
                     /locus_tag="HA345_05095"
     CDS             complement(4083..4583)
                     /locus_tag="HA345_05095"
                     /inference="COORDINATES: protein motif:HMM:NF012584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84766.1"
                     /translation="MVDLKMQDGRIVSVSVGGDPVSIVKILEDGEDIIPIVGNVRVDS
                     RPSRIVIERDGVESIVHCARVGDRWWIHLDGYVHVVDVIEPGAANASDAEGAFTAPMP
                     GKVLDVLVPEGARVREGQDLMVLEAMKMEHRIAADRDGTVSSIYFQTGDQVDAGSVLL
                     DFVEDE"
     gene            complement(4593..5741)
                     /locus_tag="HA345_05100"
     CDS             complement(4593..5741)
                     /locus_tag="HA345_05100"
                     /inference="COORDINATES: protein motif:HMM:NF014805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HIH84767.1"
                     /translation="MDAGVPVIPGQEIVDSDDEGRLIDALVAAATEVDYPLLLKASAG
                     GGGKGMRAVHEPKNLQQEFLAARREAQTAFGDGTVYIERLLDGSRHIEVQILADLHGS
                     TVHLFERECSIQRRHQKVVEEAPSPVLDESTRLAMGDAAVAAAAAVDYAGAGTVEFLL
                     APNGSFYFLEMNTRLQVEHPVTECITGVDLVEQQIRVASGLPLPFTQEDLTIRGHAIE
                     VRIYAEDPSQGFLPATGPLAVFRPPEGPGIRLDTGVREGDVARIDFDPMLGKLIVHGS
                     NRDHAIRRMMSALSDFVILGATTNIGFLSDVIAHPAYRAGETDTGFIQRHYPKDWVAP
                     APSEALLLIAAASEHLGIHRKSVGLTAVNDTGRTTPNDPFQRLDRRYP"
     gene            complement(5748..>6099)
                     /locus_tag="HA345_05105"
     CDS             complement(5748..>6099)
                     /locus_tag="HA345_05105"
                     /inference="COORDINATES: protein motif:HMM:NF012510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acety-l/propionyl-CoA carboxylase subunit alpha"
                     /protein_id="HIH84768.1"
                     /translation="VLVANRGEIACRVLRACNEMGLESIAIRSDADYGALHTEVADSV
                     VHLEGETLADTYLNIDAILAAARSSGADAIHPGYGFLSERAAFARAVQEAGLIWIGPP
                     AEAIESMGDKVTAR"
BASE COUNT         1658 a         1502 c         1451 g         1488 t
ORIGIN      
        1 aatagtcaga tcggcaatac atgcacgcgt tgcatcaagt cgcccaccca aaccagtttc
       61 aatcactgct cgatctacac ctacagaacg aaagataatc atcgctgcaa ggaataatgt
      121 ctcaaaatat gatatttcga tggctggagc ctttgtagaa agagtacgta tggcatgaag
      181 tgccttatcc aactgctttg gatcgataag tttgccatca actcgaattc tttcctctac
      241 atggcataga tgaggagagg tgaacagtcc aaccatatta ccgcctaaag tcaaggcatt
      301 ggcaagatgg ctggcagtag tcccttttcc gtttgaacct gcaatgtgta cacagggaaa
      361 atgcatgtga ggcatgtcaa gccgggcaag catcgtcatc gtagcttcaa ggccaggctg
      421 cattccaatg cgacggcgat ctttcaacca atccctaatc ggcattccag acacaggtga
      481 tttcgggcca tgttcgtcca tcaagtgtac atatactgaa atgcgatttc aacttcccta
      541 caataatggc gcccaaggaa ccctccctct ctgaggctat ggaaggccaa tgggcatcga
      601 tgattggcat ggctacaatg ttcgtgacca caatcggatt agccgcgtta atccagccat
      661 tctacaatca cgatgccacc cgtgctttcg gacctggttc tgagaccaaa ttaggattta
      721 ttatccttga aggtgtattc atactcgtct tcactttcgt tattatttgg ttagcgaaga
      781 aaaatttgca gaaattcatc caagttggta tcctactcgt gctctggatc gctctaacct
      841 attcggtggt accgatggcc cacctcatga tgccgatcga tgaccccaca atggattcca
      901 ccgaagccgg ttccaacgcc atgatgattc caggattgtc tacatccgat gagttagtcc
      961 taacaaatgg aactgcaata atgtccgtcg aaaatgtcga tggaggcatg gaagcccttg
     1021 ctggaggaaa catccgatgg agttttgata tcgaaaatca aacaggtgaa cccgctacat
     1081 caagagaccc cacaattgtt gcgagtcatg gatcctatgt gatttgtgat gatacctcat
     1141 ggaaaagatt cgatccggac accggcaaca tactagaaac gtatgcagac gattgtactg
     1201 tgggctttgt tgatgcaaat ggagaggcat ggcacatcgt tcgccaacgt attctcaaga
     1261 ttgacccgtt caagcccatc gaggaaatcg atacaccgct agatctgaac tggatgtggg
     1321 taatgccaga tgggttcaat ccgaacacaa tcctacggat tgaacacatt ggcacatcac
     1381 atctgctgat tgtatgcgag agttgggctg gcgtcatcga gattcctgct gaacggtctg
     1441 aggcaggatt tgaaccgatg ggaatcccca caacatggaa catgacgctt cccgcggaag
     1501 ggatattctc agctgttgcc tacggaaaca cacctggtaa cgcgattaat gatacagcaa
     1561 aatcattcag cctattcctt ggccaacctg acggttcagt ggaggcactt ctcgtgcatt
     1621 caaatggtag cgtggcggat aacccagaca tcaatctcaa cgaggcattt gagggcccaa
     1681 ttcgcggact tatgctagct gattgctgta atggtggttc gaatgacctc tggattgtcg
     1741 acgggaatga tctgaggata ttaatgggga gttcgatgac tgatcggtct agaggcacaa
     1801 ctatcgaagg cgagggccat gtagccatgg cactaatcta tcgagacagt tcgaatcacg
     1861 atattctcat ggatggaata ctgttggtgg acactgaact cctcaaccaa tcctctccat
     1921 gggtgcgagc ggattttgtg ataccggaag gagcaccatt cgagattggg ggagtaggtg
     1981 ttcaatatgc agatattatt ggtattggga ttgcgacatt gttgatgatt gctctcatca
     2041 ttagacctga atggtacgtg gtcaatactg ccggaattct cgtaggctcc ggcgtcagcg
     2101 tgatgctagg ggtatcgttc gttccatggc ttgtaatcat cttcatgatt ggtatggccg
     2161 tctatgacca ctgggctgtc aatggtagca aacacatgct gacgttggcg gacacaatga
     2221 ttgatctgaa actaccgata cttctcgttg ctccgaaaga caaggattac tcattcctag
     2281 atgaggggga ctaagtaatg acagataggg gagtagaagc acatgttgag ttaccatctg
     2341 aatccgttga accaatatca actaacactc cacccaagcc ggttcgcaaa aagaagagtg
     2401 ctgatgccat gttcatgggt cttggtgacg tgatcttccc tggaatcctt gtaatttcat
     2461 ccatgacatt cctcagtggt ggtgctggat ttggaatctg gtccggacca actatggtgg
     2521 cattcggaac tctaatcgga gggttgtgtg gatatatggc actcatgacg aaagttgctc
     2581 gaggaaaacc acaagccggt ctcccattgc taaatggtgg ttcaatcctc ggttatctga
     2641 tatctgcgct actgttcatc ggccccagcg ctctcgcatt caatattact ctcttctgag
     2701 gagaggaacc gttgaagcga agagccccct cctcgatgtg ttgctatgct tgagatgcgc
     2761 ctctttcgag atgctccgga gatgattcgg gcagaccatg accggagagg tttaccccac
     2821 gatatgattg accaagtaat tgctttggac actcgttgga aagatcttcg ataccaagca
     2881 gatcaacttc gaaagaagcg taatgaatct gctcgaggta ttgcggcagc aaagaaatca
     2941 ggaaataagg aagaagcaga tcgaattctc tccgaagttg ccgacatagg tgctgagatt
     3001 gaacgccttg gaaacgaatc tgatgaagcc gagaacgagc gggatcgcgt gagaatgaga
     3061 gtgcccaata ttatgcatga gtctgttcca ataggtgatg acgataccaa aaatatcgaa
     3121 cgctccatgc atggtgtgat gccaaaattc gcattcgagc caaaggtcca caacgatctc
     3181 atcgaagaga acgcatgggt ggatttaggt agagctgcga aggttgctgg atcaagattc
     3241 tactacctga aaggtgatct agcccgactt gagatggcgc ttcagcaaca taccattgac
     3301 ttccttgtta atcgcggatt cacacttgtc caaccacctg taatgatgaa tcgagaagcc
     3361 tacgaaggcg taacggatct ctctgacttt gagaccgtca tgtatggaat tcaacctgat
     3421 ggattctatg ctattgccac aagcgaacat cctctaacgg cgatgttcat ggatgaaatc
     3481 atcgaaccgg ctctccttcc aattaagatg gcgggcgtca gtccctgttt ccgtagagag
     3541 gttggagctc acggactatc cgacaaaggc atctggcgtg ttcatcaatt caccaaggtt
     3601 gagcagatta ttatctgtcg acctgaggat tcctggaatc accatgaaga gttgctccaa
     3661 aactgcatcg acctatggga tggattaggg ctccactacc gtgtagttga catctgtaca
     3721 ggagatatgg gcacagtggc agcaaagaag tacgatctcg aagcatggct ccctggtgca
     3781 ggtgcataca aggaagtcgt atcttgctcc aattgtacag attatcaggc caaccgactg
     3841 aagatgagat atcgaactgc agagggtaac acgtcagttc acacgctcaa ttccaccgct
     3901 gtagcaacga gtcgggccct cgtcgcaatc atggaacagg gtcaggaaga agatggacgc
     3961 gtgattattc cagaggccct acgtccatat atgggtggaa tgagccatat tgaaaaaagc
     4021 aattggtaat ttaaattatc aattggaaaa tttcatttaa ttcaaaatga atcccaattg
     4081 gttcattcat cctcaacgaa atcaaggagt actgaaccag catcaacttg atcaccagtt
     4141 tggaaataaa ttgaggagac agtaccatca cggtctgctg caatccgatg ctccatcttc
     4201 atcgcctcaa gaaccatcag atcttgccct tctcggaccc ttgccccctc aggtacaagg
     4261 acatccaaaa ccttgcccgg cataggtgca gtgaatgccc cctctgcatc tgaagcatta
     4321 gccgcgccag gttcgataac atcgaccaca tggacatacc catcaagatg gatccaccaa
     4381 cgatcaccca cacgggcaca atgaacgata gattcgacac cgtccctctc gattacgatt
     4441 ctagatggcc gagagtcgac tctcacattc cccacgattg gaatgatgtc ttctccatct
     4501 tcgagtatct tgacaattga gacggggtca cccccaacac taaccgaaac aattcggcca
     4561 tcctgcatct tcaaatcaac catgatatca cctcaagggt acctccgatc tagacgttgg
     4621 aatggatcgt ttggtgtcgt tcgacctgtg tcatttaccg ccgttaaccc tacactcttc
     4681 cggtgaatac cgagatgctc agaggcggca gctatcaaca agagagcttc ggatggtgca
     4741 ggtgcaaccc aatccttggg ataatgacgt tgtatgaaac cagtatcagt ttctcctgca
     4801 cgatatgccg gatgtgcgat gacatcggag agaaatccaa tattcgtagt cgcaccaagg
     4861 atgacgaaat cggacaaggc actcatcatg cggcggattg catgatcacg attcgaacca
     4921 tgaacgataa gtttcccgag catcgggtcg aaatcgatac gagccacatc accctcccta
     4981 actcctgtat ctaagcggat acctgggccc tcaggtggtc tgaacactgc caaggggcca
     5041 gttgcaggta ggaatccttg agacggatct tcagcataaa tccgaacttc aattgcatgg
     5101 ccgcggatag tgagatcttc ttgagtgaaa ggtagtggga ggcctgaagc aacacgaatc
     5161 tgttgttcaa ctaaatcgac cccagtaatg cattccgtaa ctggatgttc gacctgaaga
     5221 cgagtattca tctcaaggaa ataaaacgaa ccatttggag cgagaagaaa ctcaacggtc
     5281 cctgcacccg cataatcaac agctgccgca gccgccactg cagcatcacc cattgctaac
     5341 cgcgtagact catctagaac cggggacggt gcttcctcca ccaccttctg gtgacgcctc
     5401 tgaatcgaac attctctttc aaaaagatga actgtagaac catgtaaatc tgcaagaatc
     5461 tggacctcga tatgacgaga cccatccaat agacgttcga tatataccgt cccatcacca
     5521 aaagcagtct gtgcttctct tcgagcagca agaaactctt gctggaggtt cttcggttcg
     5581 tgaactgcac gcatcccctt tcctcctccc cctgcactcg ctttcagaag gagaggatag
     5641 tcgacttccg tggctgccgc cacgagtgca tcgataagac ggccttcatc atctgaatca
     5701 acaatctcct gaccaggaat tactggaact cctgcatcca tcatccgtca acgcgcagtc
     5761 accttatccc ccatggattc gattgcttca gcaggaggac cgatccagat gaggccagct
     5821 tcttgtacgg cacgagcaaa ggctgcacgt tccgagagaa agccataacc cggatggata
     5881 gcatctgctc cacttgaacg agcggcggcg aggatggcat caatattgag ataggtatca
     5941 gcgagggttt caccctccaa atgtactacg ctatctgcga cttcagtatg taacgcacca
     6001 taatctgcat cagatctgat tgcgatactt tccaatccca tctcgttaca ggcacgcaat
     6061 actcggcagg cgatctcacc tcgattcgca acgaggacg
//
LOCUS       DUKB01000154            2838 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_317566, whole genome shotgun sequence.
ACCESSION   DUKB01000154 DUKB01000000
VERSION     DUKB01000154.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2838)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2838)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_317566"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="HA345_05110"
     CDS             <1..523
                     /locus_tag="HA345_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84769.1"
                     /translation="SEELVSEELVSEELVKIPDDLIGILSQWIEKSEYGKDALQLLET
                     KSQIEQIRPGVSWRVTLEQECGISSSIPPTKLFEEISQHRTFVVEHWKVFVISCLNEI
                     DENTWLNGTTLGHKLVHYISKSEFNNRKELNKALGMESNSTIPNSILTHLDSKIEIDW
                     PDPTYWRIRRKTK"
     gene            complement(533..1258)
                     /locus_tag="HA345_05115"
     CDS             complement(533..1258)
                     /locus_tag="HA345_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84770.1"
                     /translation="MAKRKRGGFGKFLGNLGGNPYDRLMSQFERTVKQAGDDDDELAD
                     QLNRFARIVKRRYEEGEIDDEEHDLLIEEVEDAHPDDKSFARLGDGSDEFYDSDDLPD
                     APELKVGKDVDLDDLLQGSRSDSTGSWGSDEYDEYRQRMAEEFMRESDEAIASGDHEM
                     VQAQDPGGGRVFGDDEEEAEKMKRKIMIEEGMISEEEDTAEESDDDDGIEVDEDGVEW
                     WEDEDGQWWYRPPDEEDWFAYDE"
     gene            1321..2079
                     /locus_tag="HA345_05120"
     CDS             1321..2079
                     /locus_tag="HA345_05120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84771.1"
                     /translation="MVEPWLLDAAAAYNRQSLEQRDGYRGLILLPVVHLKTILDWAFH
                     SLPDEILVGFDPMMDSPHPEDVDEIFTGDDYRAGLHQGEGFILGEPHLVNRGDSYSVH
                     HIPEEWVDEVFAADRGGRGGRFTHWLHTHPNAVAIPSGADADAAQWTAGVDMILGIQF
                     TPEGPLPWFDNVEGVRRLLNPEEAAKRVDEMKPTGRRGWARVRHSREQRSVLGRAPTG
                     HRIHGLELIAFHRTGVGINVVLVDDKGRAIGMDN"
     gene            complement(2112..2651)
                     /gene="orn"
                     /locus_tag="HA345_05125"
     CDS             complement(2112..2651)
                     /gene="orn"
                     /locus_tag="HA345_05125"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012830261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HIH84772.1"
                     /translation="MTSERLVWIDLEMTGLDPVENKIIEIATIVTDGDLNIIAEGPNL
                     IIYQPEEELDKMDDWNVRHHTANGLIEQVRTSETSLEDAEAETLAFLQEHCIENQSPL
                     CGNTIGQDRRFLRRYMPVLHEFFHYRSVDVTTVKILMDLWYQAPQYHKGDGHRALDDI
                     RMSIEELRHYRRIGFKSEL"
BASE COUNT          762 a          700 c          663 g          713 t
ORIGIN      
        1 atctgaggaa cttgtatctg aggagcttgt atctgaggaa cttgtaaaaa ttcctgacga
       61 tttaatagga atcctatcgc agtggataga aaaatcggag tatgggaaag atgctttgca
      121 attattagaa actaaatctc aaattgaaca aataaggcca ggagttagtt ggagagtcac
      181 actagaacaa gaatgtggta ttagttcatc tataccccca actaaattat ttgaagaaat
      241 cagccagcat cgaactttcg tggtcgagca ttggaaagtt ttcgtaatca gttgtttgaa
      301 tgaaattgat gaaaatactt ggttgaatgg gacaacattg ggacacaaac tagtacacta
      361 tatctctaaa tcggaattca ataatcggaa agaattgaac aaagcactag gaatggagag
      421 taattcaaca atacctaact cgatattaac tcatctcgat tcaaaaattg agattgattg
      481 gcctgaccca acttactgga gaatcagaag aaaaacgaaa tgaggagaaa aatcactcat
      541 cataggcaaa ccaatcttct tcatcagggg ggcgatacca ccactgacca tcctcgtcct
      601 cccaccattc aacgccgtct tcgtcaacct ctattccatc gtcatcatcg gactcttcag
      661 cggtatcttc ctcttcgcta atcatgccct cttcgatcat aatcttgcgc ttcatcttct
      721 ccgcttcttc ttcatcatca ccaaagacgc gccctccgcc agggtcctgt gcttggacca
      781 tctcatggtc acctgatgcg attgcttcgt cagactcgcg catgaattcc tcagccatcc
      841 gctggcgata ttcatcatac tcatcggagc cccatgaacc cgtagagtct gaccgggatc
      901 cttgaagaag gtcgtcgagg tcgacgtcct taccaacctt caactcaggt gcatctggaa
      961 gatcatcaga atcatagaac tcatcggaac catcaccaag tcgagcaaag gacttgtcat
     1021 cagggtgagc atcttcgacc tcctcaatca gtaggtcgtg ctcctcatcg tcaatttccc
     1081 cctcctcata acgacgtttc acaattcgag caaaacgatt caactgatct gcaagttcat
     1141 cgtcatcatc accggcctgt ttgacggtgc gttcaaactg actcattaga cggtcgtagg
     1201 ggttgccacc gagatttccg aggaacttgc cgaaaccgcc gcgtttcctc ttcgccatac
     1261 cgataaccag atggcactcg gggtcgaacc ctcattagtc cttcccgaca tcgaagggac
     1321 atggtcgagc cgtggcttct agatgcagca gcggcataca accggcaatc attagagcag
     1381 cgcgacggtt accgtggact catcctcctt cccgtagttc acctcaagac aatcctcgac
     1441 tgggccttcc actctcttcc cgatgagatt ctcgtcggat ttgatccgat gatggattca
     1501 ccccatccag aggatgtaga tgagatattc acgggtgacg attaccgcgc aggactccat
     1561 caaggcgaag gattcattct cggagaacca catcttgtta atcgtggtga ttcctactca
     1621 gtgcaccata ttccagaaga atgggttgac gaggtcttcg ctgcggatcg cggtggacga
     1681 ggtggacgtt tcacacactg gttacacaca catccaaacg ctgtcgcgat tccatctggt
     1741 gcggacgcag atgcagcgca gtggaccgca ggagttgaca tgattctcgg tatacaattc
     1801 acacctgaag gaccgttgcc ttggttcgac aacgtagagg gagttcgtcg actattgaat
     1861 ccggaagagg ctgcaaaacg tgttgatgag atgaagccga ctggacggag gggatgggcg
     1921 cgtgttcgcc actcaaggga gcagcggtct gttctcggac gagcgcccac tggacatcga
     1981 attcacggtt tggaactgat cgcatttcac cgaaccggtg ttggaataaa tgtggtatta
     2041 gtcgacgata agggacgtgc tattgggatg gataactaaa ccaatcaagt tgaatctagt
     2101 gtttggaaca tctataattc agatttgaaa ccaatgcgac gataatgcct gagctcctct
     2161 atactcattc gaatatcgtc caatgcacgg tgcccgtcac ccttgtgata ctgaggtgct
     2221 tgataccata gatccatgag aatcttgact gttgtaacat cgactgaccg gtagtggaag
     2281 aactcgtgaa gaactggcat gtaacggcgt agaaaacggc ggtcttgtcc aattgtatta
     2341 ccgcataagg gcgattgatt ctcaatacaa tgctcctgta agaatgcgag tgtttctgcc
     2401 tcagcatcct caagcgaagt ctccgaagta cgaacctgtt caatcaagcc attagcagta
     2461 tgatgtcgga cattccaatc atccattttg tccaactcct cctccggctg gtagataatg
     2521 agattcggcc cctctgcgat gatattcaga tcaccgtcgg taacaatggt tgcaatctcg
     2581 attattttgt tctcgaccgg gtccaaaccg gtcatctcaa gatcaatcca gacgaggcgt
     2641 tcggaggtca tagtgctcgg gtctagttgg cctgacttag tggttcggac gggactgaca
     2701 gatgggcagg atgaaagagg gttgagttac ggaaccaaca tggaggatgg caccatatcg
     2761 gaacgggtag gatatctcga aatcctgcaa gtcaatccga cctaccggcg atacttcatc
     2821 gccaacgtgc tgtcaatg
//
LOCUS       DUKB01000155            7087 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_371278, whole genome shotgun sequence.
ACCESSION   DUKB01000155 DUKB01000000
VERSION     DUKB01000155.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7087)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7087)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7087
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_371278"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>202
                     /locus_tag="HA345_05130"
     CDS             <1..>202
                     /locus_tag="HA345_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006523852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84773.1"
                     /translation="GCDMGTCGCCAVLVDGEPVLSCLTLAFEVEGKEITTVEGLADGH
                     HLHPIQQCFADHGGSQCGFCTPG"
     assembly_gap    203..502
                     /estimated_length=300
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <503..779
                     /locus_tag="HA345_05135"
     CDS             <503..779
                     /locus_tag="HA345_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006092370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HIH84774.1"
                     /translation="GGSQCGFCTPGFLVVSAALLDKEPDPSEAAIKEAIEGNLCRCTG
                     YQQIVTSIQEAGEMLRNGLTGDDRTEAASDPHPVGPDEPTLPPGDAR"
     gene            784..3591
                     /locus_tag="HA345_05140"
     CDS             784..3591
                     /locus_tag="HA345_05140"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013482.1,HMM:NF014758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HIH84775.1"
                     /translation="MSKGYRQAPGGSSDKKRKDGKRTAGKQDFGVPGSGGSNPYSELQ
                     DIERIPNSQGGQLEQPRGPHVHDPHITGQTIGKATPLVDSRWKVTGQAEYGDDIRLPN
                     ELVGRILRSPHHYARIVSIDTSEAEALPGVRAVSTGMDSVNRFGVLPVTKDEHAMAQD
                     KVRHVGDLVACVAAESEEIAIEALNHIHVDYEVMESIHDMEDGLLDSENPIHDRGKYH
                     IGESNVQKRVFQQFGHTDAMHDAPFQSKSDWTFAGLHHGFTEPHAVVAHWDPNGRLQL
                     YTPQQVPHYVHRALSSVLDVPMHQINVIRTFVGGGFGGKSDPFPHEMCAAILAKKSGR
                     PVRINFDREEVYWINRGRHPSRIQMEVYADEKGRIAGIETDALIDGGAFASFGHVTTY
                     YNGVLHTSPYEIGGFHYTGARVWTNKPASGAMRGHGAVNSRCAVEVAIDDVCEQMGVD
                     PMTFRLANLLPPHCRTITGFRITSTGMRECLDEVRKQSGWDDKFRKMPLGRGIGVGCG
                     FFISGSGLPIHWDPENFPHATVHLQCDMDGGVTVHTGAADIGQGSDTAVAQSVSEVLA
                     LPLDMIRIRSRESDTAPVDLGSYSSRVTFMNCNAAIRAAIELREKVLNAAWEIIGYHP
                     DSLVLGDRRIYYKRDPAIGVSWLQAVHKAQADTGSLIASGAYRTPPMGGVHKGAAAGL
                     APAYSFSAYVAEVEVDPETGFVRVIKAWAAHDCGKALNPLAVEGQIIGSCHMGMGQVL
                     SEEMRYGRTGHLLNPDLLDYKIMSVHEMPEVVPIIVESNDPEGPFGAKEAGEGPLLPI
                     LPAVVNAIYDAVGVRVNELPVSPDRLYSTIEKQCRKMGIKDPLDLPNPSFEPSSLQAD
                     LENRAKEHAHRDLQRDLLKDRSSYVNGVLFGFDPDRPLPEQSEGWRESVTPTPEDLAD
                     PKKRAARAWSHVERRKRRDDA"
     gene            3588..4562
                     /locus_tag="HA345_05145"
     CDS             3588..4562
                     /locus_tag="HA345_05145"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013134.1,HMM:NF015415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84776.1"
                     /translation="MKTPPFRLHRPTTIDEAVTLAADLVKRKQGFDWVSGGTDLLANY
                     KWHINTQPHVISLASIEELTRHDAHHIGAMVRLHELEHGPTHPLLRQAAGTIASTLIR
                     RSATVGGNLCLDTRCFWYNQTEDWRRSIDWCHKCDCDTGADCRVIPNQNTLCVATYQG
                     DLAPCLMVLDATIHLAGPEGVRSMSIADFYALDGMTRNVLKIGEFVTHVSTPEESNDL
                     EGDYQKLSLRESWDFPEAGVAAAWKRTDTGLTTLRIATTACESIPRIHLEPAEAALVD
                     WNGESTTIEIAEAIRREVKPVNNTYFPPAYRRKMLRVLTKRALKGTWM"
     gene            4568..5512
                     /locus_tag="HA345_05150"
     CDS             4568..5512
                     /locus_tag="HA345_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84777.1"
                     /translation="MRAHLLIFLLVAPLLATAATAQTDPPSDPFGWDLTIIEPNDGPD
                     YDLSTNGEVTVEFFIENTGLTDIQISIEYDVPFNASSDGPTEESIGAGENETFTVKLT
                     GVNVITNTAGLAASLKIEATLETRAGTPIGSGDSRSDEVDIRIPRIYQLMIGDPTVAL
                     DFNSGTMMDFQLEVTNHGNSEDRIGDVELEDDCPLLSVSVDEASDLEKVLKPQMDQNP
                     GVANLKIVLDISAAHPPRACDIDIRVSSHGSKAEGTMVWVETTVRIEVIGGESEENTE
                     DNTPNDPTIVTKTTVPAPSIFYLLISTLVAFGVASKRK"
     gene            5643..>7087
                     /locus_tag="HA345_05155"
     CDS             5643..>7087
                     /locus_tag="HA345_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84778.1"
                     /translation="MVANEGEGSRFNLVIAIALAATLLLVLMLPMAFAAGKDTAYSAY
                     DQSQGAGQITDVRATLGNGEVGDITGLGYTMGNTISTPMLVNDWQNPHRTLLMVIAPE
                     KPIGETEAQAIFEFVTEEGGKVIVASDNKNANVLAGKFGLTYYNDPLFDNDQVYEVVN
                     EDGDIERHPTNVWGLHSFNKDISEMQEGELSTGCSETALATRTIDSCRMPVMYRGPSG
                     IQVGGLESDDPESNEYIERDVNVLAYASPGAFIDILGDGSEGNVENDAPGDIALSVRI
                     DYPGITTMDKLRGTGSSNEYGELSVTGSIVFFADDEVFANQYWTLERAQEAGLDANCA
                     GATCWQRDISGGTWSGNYEYVHTLIWDMMEFDNGDLAQSVATGRGNFHIVFDESRHVT
                     GVASQPFIETISTIVLLTSDNFLKWLIILNLGLLLLVSIMVVPEKANWRHVFDLTRFR
                     ERPTKVNSSDYRQRVQKALFAKVRVFYDLTR"
BASE COUNT         1794 a         1741 c         1730 g         1522 t
ORIGIN      
        1 aggatgtgac atggggacct gcggctgctg tgccgtactc gtcgatggag aacccgtact
       61 ctcctgcttg actcttgcat ttgaggtcga ggggaaggaa atcaccactg tcgaaggcct
      121 agcagacggt caccatcttc atccaatcca acagtgcttc gccgaccatg gtggaagcca
      181 atgtggattc tgcacacctg gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nntggaggca gtcaatgtgg attctgcaca cctggtttcc
      541 tcgtagtgag tgcagctctc ctcgacaaag aaccggatcc atccgaagcc gcaatcaaag
      601 aggcgattga ggggaatctc tgccgctgca cgggctacca acagattgta acctcaatcc
      661 aagaagccgg agaaatgctc cgaaatggac tgactggtga tgatcgtaca gaggctgcct
      721 ctgacccaca tcccgtcggc ccagatgaac cgactctacc gccaggcgat gcgaggtgat
      781 tccatgagca agggatatcg gcaggctcca ggcggctcct cagataagaa gcggaaggac
      841 ggaaaacgga ccgctgggaa acaggacttc ggagtccctg gaagcggcgg atccaatccc
      901 tacagcgagt tacaagatat cgaacgtatc cccaacagcc aaggagggca acttgaacag
      961 ccacgtggcc cacatgtgca tgaccctcac atcactggcc agacaattgg aaaggctacg
     1021 ccattggttg attcgaggtg gaaggtcacg ggtcaagccg agtatggcga cgatattcgt
     1081 ctacccaatg agctcgtagg tagaatcctt cgttcacctc accattatgc tcgaattgta
     1141 agcatcgata cgagtgaggc agaagctctt ccaggcgtgc gcgccgtctc cacgggaatg
     1201 gattcagtca accgattcgg tgttctccca gtgaccaagg acgaacacgc gatggctcaa
     1261 gataaggtca gacacgtagg ggatcttgtt gcctgtgtcg cagccgaatc cgaggaaatt
     1321 gcgattgaag ccctcaacca tattcatgtg gactacgaag ttatggaatc gattcatgac
     1381 atggaagatg gactcctaga cagcgagaat cctatccacg accgaggaaa atatcacatc
     1441 ggcgaatcca acgttcagaa acgtgttttc caacagttcg gccacaccga tgcaatgcac
     1501 gacgccccgt tccaatcaaa gtcagactgg actttcgcgg gcctccatca tggtttcacc
     1561 gaaccccatg cagtcgttgc acattgggat ccaaatggtc gacttcaact gtatacgcca
     1621 caacaagtcc ctcattatgt gcatcgtgct ctatcctctg tactcgatgt cccaatgcat
     1681 cagatcaatg tcattcggac ttttgttgga ggaggttttg gtggcaagtc ggacccattt
     1741 cctcacgaaa tgtgtgccgc catcctcgca aagaaaagtg gccgacctgt cagaattaac
     1801 tttgaccgag aggaggtcta ttggatcaac cgtggccgac acccgagccg tatccagatg
     1861 gaggtctacg cggacgaaaa agggagaatt gccggcatag aaactgatgc tctaatcgac
     1921 ggaggtgcat tcgcatcttt cggacatgtt acgacatatt acaacggcgt gctccatact
     1981 tcgccctacg agattggtgg attccactat acgggcgctc gtgtatggac aaacaagcct
     2041 gcaagtggtg ctatgcgtgg ccacggtgca gtcaactcac gctgtgccgt cgaggttgct
     2101 atcgatgatg tctgtgaaca aatgggtgtt gacccgatga cattccgtct cgcgaatctt
     2161 ttgccaccgc attgtcgaac cattactgga ttccgcatca caagtaccgg gatgcgtgaa
     2221 tgtcttgacg aagtacgcaa gcaatccggc tgggacgata agttccgaaa gatgcctctt
     2281 gggcgaggta ttggtgtcgg ctgcggtttc ttcatctccg gatctggact accaatccac
     2341 tgggatccag aaaacttccc tcatgcaact gtacatctcc aatgcgatat ggacggaggc
     2401 gtcaccgtcc acacaggagc cgcagacata ggccaaggaa gcgatactgc agtggcccaa
     2461 tcggtatctg aggtgctcgc tttaccactt gacatgattc gtatacgtag tcgtgagagc
     2521 gacactgccc cagtagatct tggctcatac tcatcccgcg tgaccttcat gaactgtaat
     2581 gccgcgattc gtgcggcaat tgagctccgt gagaaggtcc tcaacgcggc ttgggaaatc
     2641 ataggttacc accctgattc tctcgttctt ggtgatcgga gaatctacta caagcgtgac
     2701 cccgcgattg gggtatcctg gctccaagca gtacacaagg cacaagcaga tactgggtcc
     2761 cttattgcaa gtggcgctta tcgtacacct ccaatgggcg gtgtccacaa gggtgctgca
     2821 gcaggcttag ccccagccta ttcattctca gcatatgtcg ctgaggtcga agtcgaccca
     2881 gagactggct tcgttcgagt tatcaaggcg tgggctgcac atgattgcgg caaggcactc
     2941 aacccactcg cagtagaagg tcaaatcatt ggttcctgcc acatggggat ggggcaggtc
     3001 ctctcagagg agatgcgcta tggccgtact ggacatctgc tgaaccctga tttgcttgat
     3061 tacaaaatca tgagcgtcca cgagatgccg gaggttgtac cgattatcgt agaatccaat
     3121 gatcctgaag gaccattcgg tgcaaaagag gcaggagaag gaccccttct acccatcctc
     3181 cctgcagtag tcaatgcaat ctacgatgct gtcggtgttc gtgtaaacga actgccagtt
     3241 tcaccagatc gattatactc aactattgag aaacaatgca ggaaaatggg catcaaagat
     3301 cctctggatt tacccaaccc atcctttgaa ccatcctctc tccaagccga cttggaaaat
     3361 agagcaaagg aacatgctca ccgcgatctg caaagagatc tgttgaagga tcgaagctcc
     3421 tacgtcaacg gtgtcttgtt cggattcgac cccgatcggc ctcttccgga gcagtcagaa
     3481 ggttggcgag agtctgttac tcctacgcct gaggatctcg ccgaccctaa gaagcgtgct
     3541 gcgcgcgctt ggtcacatgt agaacgtcga aaaaggaggg atgatgcatg aagacaccac
     3601 ccttccgact ccatcgtcca acaacgattg atgaggccgt cactctagcc gcagaccttg
     3661 tgaaacgtaa gcaagggttt gattgggtct ctggaggaac ggaccttctc gcgaactaca
     3721 aatggcacat caacacacag ccccatgtaa tctccttggc ttcaatcgaa gaactgacac
     3781 ggcacgatgc acatcatatc ggcgccatgg tgcgcctaca cgaacttgag cacggaccta
     3841 ctcatccact cctaaggcaa gctgcaggca ctattgcaag taccctgatt cggcgctctg
     3901 caactgtagg cggtaatctc tgtctcgaca cacgctgctt ctggtacaac cagactgaag
     3961 attggcgccg atccatcgat tggtgccaca agtgtgactg tgatacaggg gcggattgcc
     4021 gtgttattcc aaatcaaaat acgctctgcg ttgcgaccta tcaaggcgac ctcgcaccat
     4081 gtctaatggt gcttgatgcc acgattcatc tcgccggccc cgaaggtgtc aggtcaatgt
     4141 cgatcgcaga tttctatgca ctagacggca tgacacgtaa cgtcctgaag atcggtgaat
     4201 tcgtcaccca tgtgagcacc cccgaggaat ccaacgacct tgagggggac tatcaaaaac
     4261 ttagcctgcg cgaatcttgg gacttccccg aagcaggcgt tgccgcagca tggaaacgta
     4321 cggatacagg cctcactaca cttcgaatcg caacgactgc atgcgaatca attccgagaa
     4381 ttcatctaga accagcggaa gcagccttag tggactggaa tggcgaatct accactatcg
     4441 agattgcaga ggctatccga agagaggtca aacctgtgaa caatacctat ttcccgcctg
     4501 cctaccgacg aaaaatgctc agggtgctta ccaagcgcgc attgaaagga acatggatgt
     4561 gaagtagatg cgtgctcacc tgctaatatt cctactagtc gcacctttac tcgccacggc
     4621 tgctactgcc caaaccgatc ccccatcgga tccgttcggt tgggatctga caataatcga
     4681 accaaatgat gggccggact atgacctctc tacaaatggg gaggtcacag ttgagttttt
     4741 cattgaaaat acaggattga ctgacattca gatttctatc gaatacgacg tgccattcaa
     4801 tgcgtccagt gacgggccta cagaggaaag tatcggagca ggtgaaaatg aaacattcac
     4861 tgtgaaactt acaggtgtta atgtcataac gaatactgca ggattagctg cctcattgaa
     4921 gattgaggct acgttagaaa cgcgtgcagg gacacccatt ggttcaggag actctcgtag
     4981 tgatgaagtg gacatacgta tacctagaat ctaccaactc atgattggag atcctacggt
     5041 tgcccttgat ttcaattcag gcacaatgat ggatttccaa cttgaagtta ccaatcatgg
     5101 caacagcgag gatcggattg gagatgtaga actcgaagat gattgcccat tgctaagtgt
     5161 ctctgtcgat gaggcttcgg atttagagaa agttctgaag ccacagatgg atcagaatcc
     5221 aggggtggct aacctgaaaa tcgtcctcga catctccgca gcccatccac ctcgtgcatg
     5281 tgatatcgat atcagagtca gctcacacgg atccaaggca gaaggtacaa tggtttgggt
     5341 agaaacaaca gttcgcatcg aggtcatagg aggagagtca gaagaaaata ctgaagataa
     5401 tactccaaat gacccgacaa tcgtgacaaa aacaaccgtc ccagcaccaa gcatattcta
     5461 tctgctaatt tctacccttg ttgcattcgg tgtagcctcg aagcgcaaat agtaccccta
     5521 atgaagggac gtccaccgat tcatcagcat ccaacgatgg acaacatata tgcgtggaac
     5581 cgggttggga aggataggcg tttcactccg aggcgcgaaa gaagaaagga tggtgagtgg
     5641 aaatggttgc taacgaaggc gaaggtagcc gcttcaacct cgtcattgct attgccctcg
     5701 cagccacgct cctactggtc ctaatgctac caatggcctt cgctgcaggt aaggatactg
     5761 cctacagcgc ttatgaccaa tcccaaggtg caggacagat aaccgatgtc agagccacac
     5821 tcggcaacgg tgaagttggt gacatcaccg gtttaggata cacaatgggg aacacgatat
     5881 caacgcccat gttggtcaac gactggcaaa acccccatcg gacacttttg atggtcatcg
     5941 cgcctgagaa gccgattggt gagaccgaag cacaagcaat ctttgagttc gtaactgaag
     6001 aaggagggaa ggtaattgtt gcatctgaca acaagaatgc caatgtcctc gctggtaaat
     6061 tcggcctgac ctactacaac gaccccctgt ttgacaatga tcaagtatac gaggtcgtga
     6121 acgaggatgg cgatattgag cgacatccaa ccaatgtatg gggcctacac agtttcaaca
     6181 aggacatctc cgagatgcag gaaggtgaac tctccacagg ctgtagtgag accgctcttg
     6241 ccacacgtac tatcgactcc tgcagaatgc cagtgatgta ccgtggtcca agtggaattc
     6301 aggtaggggg ccttgaatcc gatgaccctg aatcaaacga atatatcgaa cgcgatgtga
     6361 acgttctcgc ctatgcatcc cctggcgcat ttatcgatat cctaggtgat ggatcggaag
     6421 gaaatgtcga gaacgatgca ccaggggaca ttgcacttag cgtccgaatc gattaccctg
     6481 gaattacgac aatggataaa ctccgaggca ctggatcaag taacgaatat ggcgaacttt
     6541 cagtcactgg aagtatcgtg tttttcgcag atgacgaagt attcgcgaac cagtactgga
     6601 ctctagagcg cgctcaagaa gctgggctcg acgcaaattg cgccggcgct acatgctggc
     6661 agcgcgatat atccggtgga acttggagtg ggaactacga gtatgtccac acactaattt
     6721 gggacatgat ggaatttgac aacggcgacc ttgcccagtc agtagcaaca ggtagaggaa
     6781 atttccatat cgtctttgat gagagtcggc acgttacagg ggtagcatca caaccgttca
     6841 tcgagacaat cagtaccatc gtattgctca cctctgataa tttcctaaag tggttgatta
     6901 tcttgaatct cggcctcctt ctcctagtat ccatcatggt cgttccagaa aaggcaaact
     6961 ggcgccatgt gtttgattta acacgcttcc gagaacgacc tacaaaggtc aactcgagcg
     7021 attatagaca gcgggttcag aaagccctgt ttgcgaaggt gcgggtattc tatgacctga
     7081 cacgtga
//
LOCUS       DUKB01000156            6713 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_165169, whole genome shotgun sequence.
ACCESSION   DUKB01000156 DUKB01000000
VERSION     DUKB01000156.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6713)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6713)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6713
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_165169"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            186..1019
                     /locus_tag="HA345_05160"
     CDS             186..1019
                     /locus_tag="HA345_05160"
                     /inference="COORDINATES: protein motif:HMM:NF012596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HIH84779.1"
                     /translation="MVKKPDIDELTVEEVISGTGVVVIATVNRPEKLNALNHEVKEAI
                     KELATWADGADHVRVIIFQGAKPGPAPEGKRPKPHAFVAGADVSDFKGKDSVTIRPEF
                     EDNVWEAVWNISKPTIALIDGYALGGGSELAISCDIRIATPRSMFGTPEINLGLIPGG
                     GGTQRLTWLIGYGRAMEMVMGGGMIDAEEAHRIGLVNHVIEADLLMEKGMELAENLAS
                     KSPLTIQVAKRAVRAALDHPISDGILLEHNMFVDLFDTKDKDIGVNAFLERSTPEWTG
                     E"
     gene            976..1791
                     /locus_tag="HA345_05165"
     CDS             976..1791
                     /locus_tag="HA345_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012034934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84780.1"
                     /translation="MPSLSAVPLSGLESDSVSETLVEAQGLAKRFGDFVALQPLDVKV
                     KSGEFFGVFGPNGAGKSTFIRLLTGQLSPTEGEAKILGIDVGDKPRLVKANIGIVPES
                     ESPPSYLTAAEFLEFVARLRRVDNLSEKVAYWLDWFGMTDKRTTLCKDLSKGQRQKVM
                     LASAFIHEPRLLFLDEPFVNLDPIYQRKCRELLLEHVANGGTIFLCSHILEIAERLCT
                     RVAVIDHGRVLAAGRLSDLRETDEETLEDIFIRLVGRSIEDIEAESDGLTEEE"
     gene            1797..3425
                     /locus_tag="HA345_05170"
     CDS             1797..3425
                     /locus_tag="HA345_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84781.1"
                     /translation="MSARRDEAHFLDAFPITFRMMFKEEWRQNVDFAKSRRILLFPAL
                     LAVVAMAVTIGLRFLTGDGVVGANAEELARETFTFDELRQGIHLMVFLFSMGMGSFAF
                     LGQSIVSQRGGGKNFLLASPAMLPIDLQTTYLAYYLKEVAFYIVLILTPVTIGMGLGI
                     LSQSFLGISTPLLWSSLLPFLLCVSLTMAQGIALSFFGSTLISRGQPFTFGIPILAAL
                     LGATVYMDIIPIDRVVLGLYAHATAIFWWTPLGFLICIVVAWIAAGLLPEDFEVRISA
                     RDDLFLPMFERLGKLGLKEDSRMRILIAKEIVDVLRSGTLFKMLGSFAVPLLFLLLMA
                     WGAEFAAFPIPFNLLSYAPFIGFFGFNFYSWLNAIDAPDHLNTMPVSVPELLRAKIWT
                     YFLLTSWIGVLFILLMAWMLNQWDVMLASMVVMLANSIYIVSLSAWLMGLRPNKAIFD
                     SGIMARFWMATAFPLIGLFLLSWTQGDTTLLENWGMQVSSSGLDAEAQALKLEDRQST
                     DMTYIMGICAILLSFSFLFLRLIDRKWRSAPFEN"
     gene            3468..4016
                     /locus_tag="HA345_05175"
     CDS             3468..4016
                     /locus_tag="HA345_05175"
                     /inference="COORDINATES: protein motif:HMM:NF024635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84782.1"
                     /translation="MSRVLVLTGLPGSGKSVASEIAVMMDIPVITMGDVIRAETAKRG
                     LEPNGDNIGEVAVDLRKEFGDDVVLRRLWPDIQNAVSKHPLVLIDGMRSTPEKDTLIE
                     LMGSGPDILAILASESTRNSRLSGRGRSDDEGTSTRDTRERNWGVEALINEANYLIQN
                     EDDINSFREEVKALLEGLSRTD"
     gene            4072..>5123
                     /locus_tag="HA345_05180"
     CDS             4072..>5123
                     /locus_tag="HA345_05180"
                     /inference="COORDINATES: protein motif:HMM:NF012652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system ATPase subunit"
                     /protein_id="HIH84783.1"
                     /translation="MARKGRGSQGKKQQKQQNKFEELDKYPVSPPHSFARIVRDLRTL
                     NILYQVIEPPLNKKETEQKDQIMNIFVQALNADIEEIDADPVAYLRAAMDQIIKSYRL
                     KISKKSRSKIFYYIRRDLIGYGRMDVLMNDANVEDISLDGTNVPIFAYHRKFESVETT
                     IAWPTDDELEAYVIKLAQRCGKHISVAEPLLDATLMDGSRIVMKLGREVSTRGSAFCI
                     RRFREDPFSPCDIVAFRTMTSLMVAYLWIAFQQGVSMLFVGGTASGKTTTLNAMCLFI
                     PWQMKIVSIESTREVNIPQPNWIPGLTRQGFGGESSEGEITEFELLKAALRERPEYII
                     VGEIRGSEAYVLFQAMA"
     assembly_gap    5124..5426
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <5427..>5682
                     /gene="tadA"
                     /locus_tag="HA345_05185"
     CDS             <5427..>5682
                     /gene="tadA"
                     /locus_tag="HA345_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HIH84784.1"
                     /translation="YVLFQAMATGHCSYSTVHADSAASLVHRLENKPIDIPRVLLPAL
                     EAIAIQIQTRINGRRVRRTKQIVEIVGVDPHSQEIITNEVF"
     assembly_gap    5683..5983
                     /estimated_length=301
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    6148..6486
                     /estimated_length=339
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1501 a         1435 c         1406 g         1428 t
ORIGIN      
        1 gcggctgaag aggagcctgc tctcgatttt ggaggcctgc ctccaccgcc tttaccgggg
       61 gagggaggac tccctctgcc tcctcctcca agcgatatgg acctgccacc acctcctgaa
      121 tgagggtgga ttaccagatc tttccaaacc atgatgctat gtatcgaacg cgcttccacc
      181 cccttatggt caagaaacct gacatcgatg aactgactgt cgaagaagtc atttctggaa
      241 ctggggttgt tgttattgca actgtgaatc gtccggaaaa actgaatgct ctaaatcatg
      301 aagtcaagga ggcaatcaaa gaactcgcta cttgggctga tggagcagac catgtgcgtg
      361 tcattatttt ccaaggtgca aagccaggac cggctcctga aggtaaacgc cccaaaccac
      421 atgccttcgt cgcaggagcc gatgtctctg acttcaaagg aaaagacagc gtaacaatac
      481 gtcctgagtt tgaagataat gtctgggaag cagtatggaa tatctcaaaa ccaactatcg
      541 cactcattga tggatacgct ctcggcggtg gaagcgaact agccatatcc tgtgacatca
      601 ggattgccac ccctcgctct atgtttggca ctcccgagat caatcttggc ctaattcctg
      661 gaggcggagg aacgcagcga cttacctggc ttatcggtta cgggcgtgca atggagatgg
      721 tgatgggtgg tggcatgatt gatgcagaag aagcacaccg tattggactc gttaatcacg
      781 taattgaagc ggatttacta atggagaaag ggatggaact cgcagagaat ctggcttcca
      841 aatccccact aacaatccaa gtggctaagc gggctgtgag agccgccctt gatcatccaa
      901 tctcagacgg tattctgtta gagcacaaca tgttcgtaga tctcttcgac acaaaggaca
      961 aagatatcgg ggtaaatgcc ttccttgagc gcagtacccc tgagtggact ggagagtgac
     1021 tcagtgtccg aaactttggt cgaggcacag ggtctcgcta agagattcgg tgatttcgtc
     1081 gccctacaac ccctcgatgt taaagtcaaa tcaggtgaat tcttcggagt cttcggccca
     1141 aatggagcgg ggaagtccac cttcattcgt ctgctcacgg gtcaactctc acctacagaa
     1201 ggagaggcta agattctcgg tatcgacgta ggagacaaac cgcgacttgt caaggctaat
     1261 attggaatcg tccctgaatc tgaatctccc ccatcctacc tcactgcggc tgaatttctc
     1321 gaatttgttg cacgtctcag gcgtgtcgac aatctatcag aaaaagtagc atactggctt
     1381 gattggtttg gcatgaccga taaacgaact acgctatgca aggatttgag caagggtcaa
     1441 cgacagaagg ttatgctagc ctcggccttc atacatgaac ctcgattatt gttcctcgat
     1501 gagccattcg tgaatcttga ccccatctat caaagaaaat gtcgtgaact cctactcgaa
     1561 cacgtagcta atggaggcac tattttcctc tgctcccaca tcctcgaaat cgccgaacga
     1621 ctctgtaccc gggtagcagt cattgatcac ggacgggttc ttgcagcggg acggctctca
     1681 gatctaagag agaccgatga agaaaccttg gaggacatct tcatccgcct cgtaggacgc
     1741 tccatagaag atattgaagc cgaatccgat ggcttgaccg aagaggagtg aaagccgtgt
     1801 cggctcgccg ggatgaggca catttcctcg atgcttttcc aatcactttc aggatgatgt
     1861 tcaaggagga atggcgacag aatgttgact ttgccaagag tcggcgcatc ctccttttcc
     1921 ccgctcttct tgccgtcgtt gcgatggcgg ttacaattgg actccgattc ctgactggag
     1981 atggagttgt aggggccaat gccgaggaac tcgctcgaga aaccttcacc tttgacgaat
     2041 taaggcaggg tatccacctc atggtgttcc tgttctcaat gggcatggga agtttcgcct
     2101 tcctaggaca atctattgta tcccaacgag gcggtgggaa aaatttcctc ctagcatcac
     2161 cagctatgtt acctattgat ctgcaaacca cctaccttgc atactacctc aaggaagtcg
     2221 cattctacat cgtactaatt ctgacaccag taacaattgg gatgggttta ggaatcctgt
     2281 cacaatcttt cctaggcatc tcgacgccgc tcctatggtc gtcgcttcta ccattcctgt
     2341 tgtgtgtctc actgacgatg gcacagggaa ttgcactatc cttcttcggc tcgacattga
     2401 tatccagagg acaacctttc acattcggca tcccaatact agcagctctc cttggggcca
     2461 ctgtgtacat ggatatcatt ccaattgacc gcgtagtact cggcctctat gcccatgcta
     2521 ccgccatctt ctggtggaca cctctgggtt tcctgatttg tatcgtcgtt gcatggattg
     2581 ccgctggcct acttcctgaa gacttcgaag tgagaatatc tgcacgagat gatctgtttt
     2641 taccgatgtt cgaacgactc ggaaaacttg ggttgaagga agacagtcgc atgaggattc
     2701 ttatcgcaaa ggagatcgta gatgtccttc gttcagggac tctcttcaaa atgctagggt
     2761 ccttcgctgt ccctcttctt tttctcctac tcatggcatg gggagcggag tttgctgctt
     2821 tcccaatacc attcaatctc ctatcctatg ctccatttat cggcttcttt ggattcaatt
     2881 tctactcatg gctgaatgcg attgatgcac cagatcatct caacacgatg cctgtctcgg
     2941 tacctgaact actaagagca aaaatctgga cttacttcct actaaccagt tggattggag
     3001 tcctatttat tctccttatg gcatggatgc tgaatcagtg ggatgtaatg ttggcctcca
     3061 tggtcgtaat gctcgccaac tcgatttaca tcgtgtcact ctcagcttgg ctaatggggc
     3121 tacgcccgaa caaggccatc tttgacagtg gcatcatggc tcgcttctgg atggcaacag
     3181 cattcccact catcggctta ttccttctat cgtggacaca aggagacacc acgttattgg
     3241 aaaactgggg catgcaggtc tcatcatcgg gccttgatgc tgaagctcaa gcactcaaat
     3301 tagaggatag gcaatccact gatatgacct acatcatggg tatctgtgct attctgcttt
     3361 ccttctcttt cctattcctc cgcctgattg atcgaaagtg gaggagtgca ccgttcgaga
     3421 actgagcgta cggtgtcttc atgagcgacg aatagatacc acctctcatg tcaagggttc
     3481 tggtactcac aggacttccc ggatcgggca agagtgtggc ctccgaaatc gctgtgatga
     3541 tggacatacc agtaatcaca atgggagatg tgattcgtgc tgaaaccgcg aaacgcggct
     3601 tggaacccaa cggagataac atcggagaag tagcagtcga tctccgcaaa gagttcggag
     3661 atgatgttgt cctgagaaga ttatggccag acattcaaaa tgcagtatcc aaacatccac
     3721 tcgtccttat cgacggtatg cgaagcacgc ccgagaaaga tactttgatt gaactgatgg
     3781 ggtctggacc agatatactt gcgattctcg cttccgagag caccaggaac tccagattga
     3841 gtggacgggg gcgatccgat gatgagggca cctctacacg ggatacgcgt gagcggaatt
     3901 ggggtgttga agcactaatc aatgaggcaa attatctgat tcagaacgaa gatgacatca
     3961 attcattccg ggaagaggtg aaagccctct tggaaggcct tagcagaact gattgaaggc
     4021 caaaggttat gccaatcctc atgcctattc cgcatggact gaggtgacac catggcgcgg
     4081 aaaggacgag gcagccaagg aaaaaagcag cagaagcagc agaacaagtt cgaggaactt
     4141 gacaaatacc cggtgtctcc tccgcattcc ttcgcacgga tcgtacgcga tctacgtacc
     4201 ctgaatatcc tctaccaagt gattgaaccg ccactaaaca agaaggaaac cgagcagaag
     4261 gaccagatta tgaatatctt cgtccaagca ctaaatgcgg acatcgagga aattgatgct
     4321 gatcccgttg cataccttcg cgccgcgatg gatcagatta tcaaatcata ccggctgaaa
     4381 atcagcaaga agtctcgatc caagattttc tactacatcc gacgtgatct aattggttac
     4441 ggccgaatgg atgtgctgat gaatgatgct aacgttgagg atatctcact cgatggtaca
     4501 aatgttccga ttttcgcgta ccatcgaaaa ttcgaatccg tggaaacgac cattgcatgg
     4561 ccaacagatg atgaattaga agcgtatgtg attaagctcg cacaacgctg cggcaagcac
     4621 atctccgtag cggaacctct gcttgatgca acgctaatgg atggttcccg tattgtcatg
     4681 aaactcggtc gcgaagtatc gacccgcggt tccgcattct gtattcgccg attccgcgaa
     4741 gatccgttca gcccatgtga tattgtggcg ttccggacta tgaccagcct gatggtagcc
     4801 tacctatgga tcgcattcca gcaaggtgtg tcaatgctat tcgttggagg tactgcctcc
     4861 gggaaaacta ctactctaaa tgcgatgtgc ctattcattc catggcagat gaaaatcgtc
     4921 agtatcgaat caacacgtga agtaaacatc cctcagccaa actggattcc aggacttacc
     4981 cgccaaggat tcggaggtga atcctcggaa ggagaaatta cagagttcga acttctcaag
     5041 gccgccctcc gtgaacgacc tgaatacatc attgtgggtg aaattcgtgg ttctgaggca
     5101 tatgttctat tccaagcaat ggcnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnatat gttctattcc aagcaatggc aacagggcac
     5461 tgttcttatt ctacagtcca cgctgattca gccgcatcac tagtccaccg gttagagaac
     5521 aagccgatcg atattccacg tgtactttta cctgcactcg aggcaatcgc aattcaaatc
     5581 cagacaagaa tcaacggtcg acgtgtacga cgaactaagc aaattgtcga gattgtaggg
     5641 gtcgaccccc atagccaaga aatcatcacc aatgaagtgt tcnnnnnnnn nnnnnnnnnn
     5701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5941 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnngaaatca tcaccaatga
     6001 agtgttcaag tgggatccat caagagacga cttcgacttc agtggcaaat catatgtcct
     6061 cgagaaaatt atggttaaaa tcaacttcag ccaagagcgg atgcggaatg aactccggac
     6121 ccgtaagcgc gtcctagact ggatggtnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     6481 nnnnnnctca atgacatccg aaagtcggat caggtcgcac agatcatcac ggagttctac
     6541 gtcaggcctg aggaaatcct cgcccgcgtc gatggccttc gctgaacccg gagggaagag
     6601 ggatggctaa gaaacgaaaa tcgagggaga aggtctacga attcgaaggc atggtcctca
     6661 caacgtggca aaagttctcc acggctttct ttggaaggat gtatcgcgat cct
//
LOCUS       DUKB01000157            3932 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_121476, whole genome shotgun sequence.
ACCESSION   DUKB01000157 DUKB01000000
VERSION     DUKB01000157.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_121476"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..330)
                     /locus_tag="HA345_05190"
     CDS             complement(<1..330)
                     /locus_tag="HA345_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84785.1"
                     /translation="MATEDLSETREGEQAKPSLADLRSKVVGSASESFQGTQKSIQAL
                     DREAGLRTQVDRERRLRIAEQSERIANMKSAMRKANEIIHDEEYRLLERSLRDDLESE
                     LKRLESQV"
     gene            complement(439..852)
                     /locus_tag="HA345_05195"
     CDS             complement(439..852)
                     /locus_tag="HA345_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84786.1"
                     /translation="MTGEQEDTPVAYEIMSRISPPPANCPSCQSLLPSNLGELDCVVC
                     SAKVRVEHEPTRHDWLNEKVTCPACRHVLVAGTDVRPADLRCASCRHEFTLSPKVIKV
                     EIKCPACERGLRITQRPGERNLKCPACQEGFRVTF"
     gene            complement(889..3714)
                     /locus_tag="HA345_05200"
     CDS             complement(889..3714)
                     /locus_tag="HA345_05200"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012621.1,HMM:TIGR01525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HIH84787.1"
                     /translation="MVEDSEDLFLDEEIDSVVHDAMVMSSESTVLEAEIVESSGINLK
                     EMFQGVIANISRAFTSVTLFAGSIGGGARSKVSDLRQERKENVERAAAVREIKASSDA
                     IVMVASEIQSYEWDLLGMDCPDCAMKATRAVSRIDGVESCNVSVMDGNIRVKIDVSKT
                     HSSRLARVLSSIGYAPNLPWEVIQGVTPRMVENARTIDRRTLRRELLQVPGILDLQMV
                     EGRIEIKRVNQIHTSSDLLAGLREILGVEPVLVISSNRSLRPDQWRLLGALATIPILG
                     VIMFLEYRDMATIAEVVAFVSVFIVGWSMMSEAFNSILNRILAFQVLTTAAVVGALVL
                     QEYVEALMVVGLVSFASHLEERAIVKARELMQGGLDRLPREARLVNEKKATSKFMPFT
                     EITESKLSINVQPINASHSFSPTNIVPIDTLQIGDQVEVRSGETIPVDGRIVEGSGYI
                     DRAPLTGESLPVEISLGDFVEAGLTLTRGPLVIETTALEDDTRLAGLIDMVRVFKESP
                     PSVQTTIETFTKWWVPMVLFGAPIIAWIAYGVSEQTILTTLLLWVVSCPCALLLASPI
                     PHAAALSHASSQGIVARGGDVLEKTAQVNLVLLDKTGTLTSGRPRLHSIVTTKGSEVG
                     QSLRLAAGLEVRSNHPYAQVILSALPDGDSPMSIKSLKDGDAGVYGLFRSKPVIIGRA
                     DWLQSQGVDISSDLDQAIRNASEEGHGVSILAENGKAIALFRFVHDDPREGAQELVTS
                     LKRAGIVVEILSGDEQSSVEVFGRILGLDAKQCTGNVTPEEKTSFVQKRSVARNTLMA
                     GDGFNDAGALAVADVGIAVGSGDQVNLEAADVLIPGENPCAILTLTRLARSARRIVRL
                     NIGISLALTMTLVAIVLSGVKISITAGVLLHEASALFVILNGMWVAGSGIQRFTTVID
                     IFRDVTKDTIEAIGILIGSRVNSGATD"
     gene            3792..>3932
                     /locus_tag="HA345_05205"
     CDS             3792..>3932
                     /locus_tag="HA345_05205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84788.1"
                     /translation="MSTPESPLTNGQRPSMLICDIDGTLTDEHYGLHPDLPEAFRRLE
                     AAG"
BASE COUNT         1036 a         1050 c          890 g          956 t
ORIGIN      
        1 cacttggctc tcaagccgct tgagttcgga ttcgagatcg tctcgcaacg aacgttctaa
       61 caaacggtac tcctcatcat ggattatttc gttagccttg cgcattgcac tcttcatgtt
      121 tgcaattcgc tcggattgct cggcaatacg aagcctccgt tctcgatcaa cctgtgtcct
      181 cagaccggct tcacgatcaa gagcctggat agatttctga gtcccttgga atgactcact
      241 agctgaacct actaccttac tgcggaggtc tgcaagcgaa ggcttcgcct gttccccttc
      301 ccttgtctcc gacagatctt cagttgccat gggttcccat ccccaaccga gatcgacatt
      361 tcatggtaaa taatgtcgac agttcctaac atgcggaaaa tgtcgattta tcagcccaat
      421 ggatgcaacc gtcactaatc agaaggttac tcggaatcct tcttggcaag cagggcactt
      481 gaggttccgt tctcctggac gctgagtgat tcgtaaaccc cgttcacagg ccggacattt
      541 gatctccacc ttgatcactt taggagatag agtgaactcg tgacggcaac ttgcacagcg
      601 caaatcagca gggcggacat cggtacccgc aactagcaca tggcggcagg ccggacaagt
      661 gactttctca ttcaaccaat catgacgggt tggctcatgc tcgacgcgta ctttcgcact
      721 acatacaaca caatcgagtt ctccaagatt ggatggtaga agtgattgac aggatggaca
      781 gttcgctggt ggagggctga ttctgctcat aatttcgtaa gcaactggag tatcctcctg
      841 ctcccctgtc atggttgtcc cccgtatatg ctccaatgcc tcgatatttc aatcggtcgc
      901 accgctgttg acccttgaac caatcaagat ccctatcgct tcgatagtat ccttggtcac
      961 atcacggaaa atatcgatta ccgtagtgaa gcgctgaata ccacttcctg cgacccacat
     1021 cccattcagg attacaaata aggcgctcgc ttcatgaaga aggacacctg ctgtgatact
     1081 gattttcaca ccactcaaaa caatagctac gagtgtcatg gtaagagcca aactaatccc
     1141 gatattcaag cggacgattc gacgagcgga acgagctaat cgggtaagcg tgagaatagc
     1201 acatggattc tcccctggaa tcaggacatc ggcggcctcg aggtttacct gatctcctga
     1261 gccaactgcg ataccaacat cagcgactgc gagagcgcca gcgtcattga acccgtcacc
     1321 tgccatgagt gtatttcgtg cgactgaacg tttctgaacg aaggaggtct tttcctcagg
     1381 ggtgacatta cctgtacatt gctttgcatc aagaccaagg attcgtccga acacctcgac
     1441 agatgactgc tcatctccag aaaggatttc aacaacaata ccggcacgct tcaatgaagt
     1501 gactagttcc tgagcacctt ctctggggtc atcgtgaaca aagcggaaca atgcgatagc
     1561 cttaccattc tccgcaagaa tggacacgcc gtggccttct tcagaggcat ttctaatcgc
     1621 ttgatccaaa tctgaactaa tatcaacgcc ttgggattga agccaatctg cccttccaat
     1681 aatcacaggc ttactacgaa ataacccata gacgcctgca tccccgtcct ttagcgattt
     1741 gatggacatt ggactgtctc catcgggtag tgcggagaga ataacctgcg cgtaaggatg
     1801 atttgatcgg acttcaagac cggctgcaag gcgcaaagac tgaccaacct ccgaaccctt
     1861 tgtagtgaca atggaatgaa gtcttggacg tccagaagtg agagttcccg tcttgtcgag
     1921 caagacgaga ttgacttgtg ctgtcttctc aagaacatcc cctcctcgcg caacaatccc
     1981 ttgggatgag gcatgtgata gcgcggcagc gtgggggatg ggtgaagcaa gtaggagggc
     2041 acaaggacag gatacaaccc agagaagaag ggttgttaga atggtttgct ccgatacccc
     2101 gtacgcaatc caagcaataa tcggcgcacc gaagagcacc attgggaccc accattttgt
     2161 gaacgtctcg atggttgtct gaaccgatgg aggactttcc ttgaatactc gaaccatatc
     2221 aatcaagcca gcaaggcgag tatcatcctc aagggcagtt gtctcaatga cgagtggtcc
     2281 acgtgtgagt gtcaatcctg cttcgacgaa atcacccaga gaaatctcca cgggaaggga
     2341 ttctcctgtg agaggggctc tatcgatgta acctgatcct tccacaatgc gcccatcaac
     2401 tggaatcgtc tctccacttc gcacttccac ttgatcgcca atctgaagag tatctattgg
     2461 gacgatattc gtcggcgaaa aggagtgcga ggcattgatt ggctgaacat tgatactaag
     2521 tttagattcg gtaatttctg tgaacggcat aaactttgaa gtggcctttt tttcgttaac
     2581 aagacgagcc tctcgaggca accgatcaag accgccctgc atcaattcac gggcctttac
     2641 gatagcccgt tcctcgagat gggaagcgaa tgataccagc cctaccacca tcagagcctc
     2701 aacatactct tggagtacaa gtgcgccaac aactgcagca gttgttaaaa cttggaatgc
     2761 gagaatccga ttcaatatac tattgaatgc ctctgacatc atcgaccagc caacaatgaa
     2821 cacggataca aaagcaacta cctctgcaat agtcgccatg tcacgatact ctaggaacat
     2881 aatgacgcca agtatcggta ttgtcgcgag ggccccaagt aatcgccatt gatccgggcg
     2941 aagcgagcgg ttagagctaa tcaccaatac tggctcaaca ccgagaatct ctcgaaggcc
     3001 ggccaataaa tccgatgaag tatgaatctg gttaactcgt ttaatctcaa ttcgcccctc
     3061 aaccatctga agatcgagta tgcctggaac ctgcagaagt tcacgacgta aggttctacg
     3121 atcaattgtg cgtgcattct ccaccattcg tggagtaacg ccttgaatca cctcccaagg
     3181 aagattagga gcgtacccga tactactcag aactcttgca aggcgagaag aatgcgtctt
     3241 tgatacatcg attttcacac gaatgtttcc atccataaca gagacattac acgattcaac
     3301 accatcaatc cgcgatacag ctcgcgtcgc tttcatcgca caatctggac aatccatccc
     3361 tagaaggtcc cattcgtaac tttggatttc agatgccacc atcacaatgg cgtcactgct
     3421 ggccttgatt tcacggacgg ccgcggcgcg ttcgacattt tcctttctct cctggcggag
     3481 atcgctaact ttagatcgag cccccccgcc aatcgatcca gcgaatagag tgactgatgt
     3541 gaaagcacga ctgatattcg ctattacacc ctgaaacatt tccttcaagt tgattcctga
     3601 agactcgacg atttctgctt caagaaccgt ggactcggag gacataacca tggcatcatg
     3661 gactacagaa tcaatttctt catctaggaa gaggtcctcc gagtcctcaa ccatgaatgt
     3721 atgagtcaat tgctcccttt caacatctcc accacggttc attgaaatcg gtttggagat
     3781 tatggagttg tatgagcacg ccagaatcgc ctctaaccaa cggtcagcgc ccatctatgc
     3841 tcatctgtga tatcgatgga accctcaccg acgaacatta tgggttacac cccgatcttc
     3901 ctgaggcatt tcgacgactc gaagcagctg gt
//
LOCUS       DUKB01000158            3448 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_137280, whole genome shotgun sequence.
ACCESSION   DUKB01000158 DUKB01000000
VERSION     DUKB01000158.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3448)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3448)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3448
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_137280"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="HA345_05210"
     CDS             <1..402
                     /locus_tag="HA345_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015591369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HIH84789.1"
                     /translation="IEMAASATPRFDGDRFGVLFRSSPRQSDVLLVNGPISKKFADPI
                     VRLWEQMPEPKYCIAMGECAISGGPYYQSYNILEGVDTVIPVDIYIPGCPPRPEASID
                     GFGKLREKIIRIGGAPSTGRDGDKPIIVGDD"
     gene            395..1054
                     /locus_tag="HA345_05215"
     CDS             395..1054
                     /locus_tag="HA345_05215"
                     /inference="COORDINATES: protein motif:HMM:NF012549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HIH84790.1"
                     /translation="MIEMGTTITKEQNSEAAKAATDNLNARYEDAGITAEVVAHKAGK
                     KFDFVRVTCSPEQWRAVAKHMKFELGVNHCAMVTGTHYPSGGDKGWEVAYHLHRWPIM
                     NVEAHTMVVHEGETLKGDDIPMEFEVFINLPEGETPSVPSIQDIWEGADWHEKETWDL
                     VGIDFEGHVNMHRVLNPHDSPVGFHPLQRQHKIRYHDFNEMYDDPQGFGRKPVDEGRV
                     K"
     gene            1064..2203
                     /locus_tag="HA345_05220"
     CDS             1064..2203
                     /locus_tag="HA345_05220"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019176180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HIH84791.1"
                     /translation="MAEMWITMGPQHPMTHGLWTLRVKVDGETVTDTEAELGYIHRGV
                     EKICEARDFTQITPYCDRLCYVSAMTWAHSYIMAAEDLLEAEVPERAEYIRLMAAEVQ
                     RLASHLMWLGAFGPDIGNLTLMTWCLRDREMFLDLLQELGGSRMHYNYPRVGGVKRDI
                     PIGWANRLKAKVKLFENRINEYEMLLDESTIWLVRLQGVGYATAEDQLDAGVTGPNIR
                     AAGVNTDARWTNPYSVYDEVDWEPAVEKPTSVKGADCYDRYRVRMEEMRQSCRMLLDA
                     IEKIPGGANTHYQPGDEMILTKAPTRAPEGATGFSTYECTRGVSNFYLKGGGDARGKN
                     PYRVSIRSPMFLTIPYVAKTMIGYKVADIPAIMGSFDPCIGETDR"
     gene            2214..>3448
                     /locus_tag="HA345_05225"
     CDS             2214..>3448
                     /locus_tag="HA345_05225"
                     /inference="COORDINATES: protein motif:HMM:NF012373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit H"
                     /protein_id="HIH84792.1"
                     /translation="MDDWLGLHDFIYYRTREGANALFDGTFLDSSSNDIAFFVYTLMV
                     CLTTFAGIMLSMFMILWIERKFYARVNDRRGATTALRSLWVGENGVTAGEWWNMIPYG
                     LGKPIGAINGWLNKVAGNSGHKHEMVNRVGNRSWYGVTIFPGFFQNIADGMKFLTKEH
                     MVPSRADKVIFELAPFLVISSTIMILGMIPLSSGIYGANPELSVLFAFAIFGIAPLGV
                     FFAGWSSNNKYTLLGGIRSAAQLTAYEIPLLLSILGVCIMAGSFNFLEIVHFQHSSGV
                     WLFFLMPLGGVLFLVSMIAEVERIPFDMPEAEAELVEGWWTEYGGMRFGLLFAAEYMR
                     VYAASILFAHFFLGGWHAPFAGTIGSIPYLGDAWLAIPGIIWTLLKAWFIFTVVFVWA
                     RTALPRIRTDQILEFGWRM"
BASE COUNT          943 a          721 c          864 g          920 t
ORIGIN      
        1 atcgaaatgg cagcatctgc aactccaagg ttcgatggtg atcgtttcgg agtattgttc
       61 cgttcaagcc cacgtcagtc tgacgtttta ctggtaaacg ggccaatctc taagaaattt
      121 gcagatccta tcgttcgcct ttgggagcag atgcctgagc caaagtattg catagctatg
      181 ggcgaatgcg caatttctgg tggcccgtat tatcaatctt acaatatctt ggaaggagtc
      241 gatactgtga ttccagttga catttacatt ccagggtgcc ctcctcgtcc tgaggcatca
      301 atcgacgggt tcggtaaact tcgtgagaag attatccgaa ttggaggtgc accttcaacc
      361 ggccgtgatg gcgacaagcc aattatcgta ggagatgatt gaaatgggta cgaccattac
      421 aaaagagcag aactctgaag ctgctaaggc tgcaacagac aatttgaatg cgcgctatga
      481 agatgcgggg attacagcag aagtagttgc acacaaagct ggtaaaaaat tcgatttcgt
      541 tagagtaaca tgttctcctg aacaatggag agcggttgca aaacacatga agtttgaact
      601 tggagtgaat cattgcgcta tggtcactgg aactcactat ccctcgggag gggacaaggg
      661 ctgggaagtt gcatatcacc tgcaccgctg gccaattatg aatgtagaag ctcacacaat
      721 ggttgtccat gagggtgaaa ctctcaaggg agatgacatc ccaatggaat ttgaagtatt
      781 tatcaatcta ccagaaggcg agacgccctc tgttccttca attcaagata tttgggaagg
      841 agcagattgg catgaaaagg aaacatggga cctggttgga atcgatttcg aaggccatgt
      901 aaacatgcac cgagttctaa atcctcacga ttctcctgtc ggattccatc ctttacagag
      961 gcaacacaag attcgctatc atgatttcaa tgagatgtac gatgacccgc aagggtttgg
     1021 tcgtaaaccg gttgatgagg gccgggtaaa gtgaggtggt atcatggcag aaatgtggat
     1081 tacaatggga cctcaacatc caatgactca cggtctttgg acactacgcg taaaggtcga
     1141 cggagagaca gtgacagata ccgaagcaga acttggatac atccatcgcg gagttgaaaa
     1201 gatatgcgaa gcaagagatt tcacacaaat tacaccgtac tgcgaccgct tgtgctatgt
     1261 tagcgcaatg acttgggcgc attcttacat catggcggca gaggatctcc tagaagcaga
     1321 agttccagag agagcagaat atattcgttt gatggcagca gaagttcaga gactagcgag
     1381 ccacttgatg tggctcggag catttggacc agacattggt aatttgacat tgatgacatg
     1441 gtgccttcgc gaccgtgaaa tgttcctaga tctgctccag gaattaggcg gatctcgtat
     1501 gcactacaac tacccgcgtg taggtggtgt caagagagac atacctattg gatgggcaaa
     1561 tcgattgaag gctaaagtca aacttttcga aaatagaatt aacgaatatg agatgctact
     1621 tgatgaatct actatttggc tagtcaggtt acaaggagtg ggatacgcta ccgctgaaga
     1681 ccaactcgac gctggagtaa ccggacctaa tatccgggct gccggagtta acacagatgc
     1741 cagatggaca aacccttact ctgtttacga cgaagtggac tgggagccag cagttgagaa
     1801 gccaaccagc gtcaagggtg cggattgtta tgatcgctat cgagtacgaa tggaagagat
     1861 gagacaatca tgtcgtatgc ttctagatgc aatcgaaaag ataccaggcg gtgcaaatac
     1921 ccactatcag cctggtgatg agatgattct aacaaaggct ccaactcgtg caccagaagg
     1981 tgctacagga ttcagtacat acgagtgcac tcgtggtgta tcgaacttct acctcaaggg
     2041 cggaggagat gcacgtggaa agaacccata tcgagtatca atccgttcac cgatgttcct
     2101 tacaattcct tatgttgcta agacaatgat tggttacaag gttgcagaca tacctgcaat
     2161 tatgggcagt ttcgacccat gtatcggaga gacagaccgc tgaggtgatt atgatggacg
     2221 attggttagg acttcatgat ttcatttact atcgcacccg tgaaggtgca aatgcgttgt
     2281 tcgatggcac atttttggac tcgtcctcta acgatatcgc attcttcgtt tacaccctca
     2341 tggtttgttt gacaactttc gcaggcatca tgctttcaat gttcatgatt ctatggattg
     2401 agaggaaatt ctacgctcgt gtcaacgatc gtcgcggagc aacaaccgct ctaaggtcac
     2461 tttgggtggg agaaaatggc gttactgctg gcgaatggtg gaacatgatt ccatacggac
     2521 ttggaaaacc aatcggtgca atcaatggtt ggttaaacaa ggtcgcaggc aactctggtc
     2581 acaagcatga aatggtcaac cgtgtaggca accgctcatg gtatggggtt acaatattcc
     2641 ctggtttctt ccagaatatt gcggatggaa tgaagttcct gaccaaggaa cacatggtcc
     2701 catcacgtgc tgataaagtg attttcgaac ttgcgccatt cttggtgata tcctcaacca
     2761 ttatgattct tggaatgatc cctctttcca gtggaatcta cggagctaac cctgaattat
     2821 cggtgttatt tgcattcgca atatttggta tagcgccatt aggcgtattc tttgccggat
     2881 ggtcctctaa caacaagtac acactacttg gtggtattag aagcgctgca caattgactg
     2941 catatgaaat cccacttctg ctatcaattc tcggagtttg tataatggct ggttccttta
     3001 acttcttaga aatcgttcat ttccaacatt cttcaggcgt ttggctattc ttcttgatgc
     3061 ctctaggtgg agtgttattc ttagttagca tgattgctga ggtagagaga attccgttcg
     3121 atatgccaga ggctgaagct gaacttgtag aaggatggtg gacagaatac ggtggcatgc
     3181 gtttcggtct tcttttcgct gcagaataca tgcgtgttta cgccgcaagt atcctattcg
     3241 ctcatttctt cttaggaggg tggcatgcac cattcgctgg aacaattggc tcgataccat
     3301 accttggcga tgcatggtta gcaattcctg gaataatttg gacactactg aaggcttggt
     3361 tcatattcac cgtagtattc gtttgggcta gaactgctct acctagaata agaacagacc
     3421 agattctaga atttggttgg agaatgtt
//
LOCUS       DUKB01000159            4815 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_232521, whole genome shotgun sequence.
ACCESSION   DUKB01000159 DUKB01000000
VERSION     DUKB01000159.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4815)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_232521"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..620)
                     /locus_tag="HA345_05230"
     CDS             complement(<1..620)
                     /locus_tag="HA345_05230"
                     /inference="COORDINATES: protein motif:HMM:NF016450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84793.1"
                     /translation="MKEIIEAYFNERSLVNHQIGSYDDCIPSSGEKGDGKNQRMNRME
                     RIVRAIRVGTDEIIEDDEGGMIKLDVLDKEIIVRIKNVSLGKPVIREANGSIHESTPV
                     QCRLRKLTYESPLYMDFKIYRDDKPTPDEETRVQIGSLPIMVRSRRCNVHPENIDNSG
                     AGKLNITSSLEDRNRYHRLLEKYGEDPLDPGGYFIINGTERVLISM"
     gene            complement(634..1047)
                     /locus_tag="HA345_05235"
     CDS             complement(634..1047)
                     /locus_tag="HA345_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009887211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit H"
                     /protein_id="HIH84794.1"
                     /translation="MALIRQQPTRTRRSRSAKRTISQKLEDEDIIGHNDRFNVLNHEL
                     VPHHELVDVEDEAKVLSPWSLMTTDAEGNQRLAKERLPKILINDPAVQILKEMEEAKV
                     EGLPAGWLTNRVVKVIRYSRSAGATTAYRLIVEAH"
     gene            complement(1273..1346)
                     /locus_tag="HA345_05240"
     tRNA            complement(1273..1346)
                     /locus_tag="HA345_05240"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1310..1312),aa:Lys,seq:ttt)
     gene            1488..2858
                     /locus_tag="HA345_05245"
     CDS             1488..2858
                     /locus_tag="HA345_05245"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015084.1,HMM:NF024880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HIH84795.1"
                     /translation="MGSSIEREIELSQQRGFEVEWTDGNGIQRLVDVPRTVYPPREDS
                     TLLHRALLKLQGAPGRLLEIGCGSGVISHSMAMIGWNVVAIDPNPFAVACARSLDDTG
                     MIVLEGELEEGPHLSHGPFDVIAWNPPYLEPIEDHLGPMEEAALTRPEIHPILQAIDH
                     LENTGCLAKDGCIVIITSDDDATRQALSQADRREWCSRRIDGHSKGGERLAAVCIWRP
                     WRFEPKRIKETESTMDELPDDSEVGDVVIADTQTSGRGRRGNDWIGIDGDFFGTWCIV
                     GPGTTKLTTRDLHIMSVTAVLEALQAFTGNGIDRIGWRPKSDLGVRWPNDLVRGEDAE
                     KCGGLLLHARTRGNEVRIHLGIGMNGSSRTVEDYLYPPILEGTLDGLEDRIHHALAGW
                     FMIHPRVPSPDLEAMRRTWWAASRTTRVISEIRRGEMQVNAFHLDEEGLHGWNGVSVI
                     DLSDVI"
     gene            complement(2864..3331)
                     /locus_tag="HA345_05250"
     CDS             complement(2864..3331)
                     /locus_tag="HA345_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84796.1"
                     /translation="MGGGGSAESIPVWDLSSLIGATLLIGTVLMALWSPSHDLSLESG
                     SGVVQITSVDVGLLGSSDAVQIDVSPGETCSGDNATTCSLIVNIGPESFEFNEAGGDA
                     TSQRSSDGPLNVTVEGEGDYTLTVSVQRQLPLEALPVILGLFLVIWGEWRKRQ"
     gene            complement(3365..3673)
                     /locus_tag="HA345_05255"
     CDS             complement(3365..3673)
                     /locus_tag="HA345_05255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84797.1"
                     /translation="MARLSKAKRVKRRWVGLRIKSESDRASLESLIQDMIPDADLRLY
                     DLRSEGDSSLAIIRVYLPDLPRFRAVAGECGWIETLTTSGKIRLVRERLGMPKPPRRR
                     "
     gene            3724..>4815
                     /locus_tag="HA345_05260"
     CDS             3724..>4815
                     /locus_tag="HA345_05260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84798.1"
                     /translation="MSERDEGISIDGPLQLLKVLLRPDTLPHIVLLILGTGGLYGYLA
                     ISGGGAGYAAIVFTSAMLAYLIIGLLGNNETIAKMLRAPPEKSVLIRIIGPVIMPIAL
                     MTSLTIIAWSTLGRDEDIRNGWALALASMFALWSIGQGLALRASATGWTSGKLKTDGI
                     RDSPLSEATNWDVRKLMIGTVVSTGIIAAIRGITLPSISGSEPLLVQWSAYLIGCIGL
                     LLLAVWLARDAIAPIDTSWTRADRRRTHRTGQLLLFLSAWHISSAWSRFTTSESGAMW
                     SEEVVLVIITVISAVWAMTNRNRSRITIVTENTAVFWAIAFGFGYAGSITIMADLSTD
                     LIGDLPLIGLLSKQFGIGSIASTLGIGHVL"
BASE COUNT         1247 a         1212 c         1190 g         1166 t
ORIGIN      
        1 tccatcgaaa ttaggacacg ctcggttccg ttaatgatga aataaccacc cggatcgaga
       61 ggatcttctc catacttttc tagaagacgg tgatatcgat tacgatcctc cagagaacta
      121 gtgatattca acttgccagc tccactgttg tcaatattct cagggtgcac attacaacga
      181 cgggaacgca ccataattgg gagtgaacca atctggacac gagtctcctc gtcgggtgta
      241 ggtttgtcat ccctgtagat cttgaaatcc atgtatagag ggctctcgta ggtcaactta
      301 cgcagccgac actgaacagg agtagattca tggatagatc cgttcgcttc tcgaatcaca
      361 ggcttaccca atgaaacgtt cttgattcga acgatgattt ccttgtcaag aacgtcgagt
      421 ttgatcatcc cgccctcgtc gtcctcgata atctcatctg taccaacacg gattgcacgg
      481 acgattctct ccatgcgatt cattcgctga tttttgccgt cgcccttctc acccgaagag
      541 gggatacagt cgtcgtagga accaatctgg tggttgacca agcttctctc gttgaagtat
      601 gcttcaataa tttccttcat aataatccct ccctcagtgg gcctccacaa tcaatcggta
      661 ggcagtagtt gcgcctgccg aacggctgta acgaatgact ttgacgacac ggtttgtcaa
      721 ccaacctgct ggcagtcctt cgacctttgc ctcttccatt tctttcaaga tttgaactgc
      781 aggatcgtta atcaaaatct ttggaagacg ttccttggca aggcgttggt taccctcagc
      841 atcggttgtc atgagagacc atggagaaag gaccttggct tcatcctcaa cgtcgaccaa
      901 ctcatgatga ggaacgagtt catggttcaa cacattgaat cgatcattgt gaccgatgat
      961 gtcctcatcc tctagtttct gactgatagt acgcttagca gaacgagagc gtcgcgtgcg
     1021 cgtaggttgt tgacgaatca gtgccatgta cttctcgacg accttgtcat cagctgggag
     1081 gctgattctg tcagcaatct gctctgaaga gagcatcttg agttggctga gatttgtatc
     1141 gtccgccaac ttgctcgcgt gcccttcatc gacgccaagt tcgatgagtt ttttcttcgt
     1201 tgaactcttt accgccatgt gacacacccc ttgcctccac accaaaaacc gatagacccg
     1261 agcaaagtca ggcgggcctg aggggatttg aacccccggc caacggatta aaagtccgtc
     1321 gctctacctg gctaagctac aggcccatgg ctgatgctgg gccttcgtcg gaccgagggg
     1381 gtattcttaa agattccccg atagaagagg gacatcagaa ggcacctcta tcatgaaaga
     1441 gaactgactc tccattcaat aaaccaccgc aaccgaagta tagtgcaatg gggagctcga
     1501 ttgaacgcga aatcgagctt tctcagcaga gaggatttga agtcgaatgg actgatggaa
     1561 atgggattca acggctcgtt gatgtccccc ggacagtata tcctccaaga gaggattcaa
     1621 ctctcttaca tcgtgctcta ctcaaacttc agggcgcgcc aggacgtttg cttgaaattg
     1681 ggtgcgggag tggagtaatc tcacactcta tggccatgat tggctggaat gtagtggcta
     1741 tcgatccgaa tcccttcgct gttgcctgtg cccgttctct cgacgataca ggcatgattg
     1801 tccttgaagg agaattagag gaaggcccac atctgagcca tggaccattc gatgttatcg
     1861 catggaatcc accataccta gaaccgatag aggaccacct ggggccgatg gaggaggcag
     1921 cattgacgcg cccagaaatc catccgattt tacaggctat tgaccaccta gagaatacag
     1981 gttgtctggc taaggatggc tgcattgtaa tcatcacttc agacgatgat gccacgcgtc
     2041 aagcattgtc ccaagcagac agaagggagt ggtgctcacg tagaatcgat ggtcattcca
     2101 agggaggtga acgtcttgcc gccgtctgca tatggcggcc atggagattt gaaccaaaac
     2161 gtatcaagga aacagaatcc accatggacg aactaccaga tgactcggaa gttggagatg
     2221 tagtaatcgc agatacacag acgtcaggaa gaggccgaag gggtaacgat tggatcggaa
     2281 ttgatggcga tttcttcgga acatggtgta tcgtaggacc tggaacaacc aaactcacca
     2341 cacgcgatct ccacatcatg tctgttactg ctgtgttaga ggctttgcag gcatttacgg
     2401 gcaatggtat cgaccgcata ggttggcgcc ctaagtccga tctcggcgtc cgctggccga
     2461 atgatctcgt caggggagaa gatgcagaga aatgtggagg actcttactt catgcacgaa
     2521 cacgcgggaa tgaggttcga attcatctcg gtatcggcat gaatggctca agtcgaaccg
     2581 ttgaggatta cctgtaccca cctattctag agggtaccct cgacggattg gaagatcgca
     2641 tccatcatgc tctagcgggt tggttcatga tccatccacg agtaccatct cctgatttag
     2701 aagcaatgag gcgaacttgg tgggctgcct caagaacgac acgtgtaatc agcgagatac
     2761 gaagaggcga aatgcaagtc aacgcattcc atctggatga agaaggactc catggctgga
     2821 atggtgtatc tgtaattgac cttagtgacg tgatctgaaa acatcattga cgcttgcgcc
     2881 attcgcccca aatcacaagg aagagaccca ggatgactgg aagcgcctcc aaaggcaact
     2941 gacgctggac gctgacagta agtgtgtaat caccctctcc ttccacagtc acattgaggg
     3001 ggccatcaga tgatcgttga ctggtcgcat ctcctccagc ctcgttaaac tcaaaggact
     3061 caggtccaat attcacaatg aggctgcagg tagtcgcgtt gtcacctgaa caggtttccc
     3121 ctggagacac atcaatctgg actgcatcag aggaacctag gagcccaaca tccacactgg
     3181 taatttgtac aacgcctgat ccagattcca aggataaatc atggctagga gaccagaggg
     3241 ccattagaac agtaccaatg agtaaagtcg caccaatcag agaggaaagg tcccatacag
     3301 gaattgactc ggcactccct ccaccgccca tagaactgcc aaccgtatag aggtcatgaa
     3361 tgcttcatct gcgccgaggg ggtttgggca tacccaatcg ttctcgcaca agtcgaatct
     3421 ttcctgaagt agtcagggtt tcaatccatc cacattcgcc tgcaacagcg cggaagcgag
     3481 gcaggtcagg gaggtaaact cgtataatcg cgagactgga atcaccttct gaacggaggt
     3541 cataaagacg taaatccgca tcgggaatca tatcttgaat cagagattca agagacgctc
     3601 ggtccgactc actcttgata cggagaccta cccatcggcg cttgacacgc ttcgctttag
     3661 acaggcgcgc catgctcttt ctgacaacga cgatttattt catcccccac tatcggagtt
     3721 tgaatgtcag agcgggatga aggaatttcc atcgatgggc cgcttcagct tctcaaggta
     3781 ctactgcggc cagatacatt gcctcacatc gtactactaa tccttggcac aggcggactg
     3841 tatggttacc ttgccatatc cggaggaggc gctggatacg cagcgattgt ctttacatcc
     3901 gccatgctcg cctacctaat cattggctta ctcggaaata atgagactat agccaagatg
     3961 cttcgcgccc caccagaaaa gagtgtacta atccgaatca ttgggccagt catcatgcct
     4021 attgcactca tgacttcact cacaataatc gcatggtcaa cattgggcag agatgaagac
     4081 atacgtaacg ggtgggcact tgccttagcc agtatgttcg ccctatggtc aatcggacaa
     4141 ggacttgcat tgagagcaag tgcaactgga tggacatcgg ggaagttgaa gacggatgga
     4201 atcagagatt cacctctcag tgaagcgacg aactgggatg ttcgaaaact tatgattggc
     4261 actgttgtat ctactggaat tatcgcagct atacgaggga taaccctacc gtccatatcg
     4321 ggatctgaac cactcctagt acagtggagt gcatatctga ttggttgcat aggtctactt
     4381 ctactcgctg tctggctcgc acgagatgcc attgctccga tagatacatc ctggactcgt
     4441 gccgatcgcc gaaggactca tcgaacgggc caactcctac tattcctctc agcgtggcac
     4501 atctctagtg cttggtctag gttcaccaca tccgaatctg gcgcgatgtg gtctgaagag
     4561 gtagtattag tgatcatcac agtgatcagc gccgtatggg ctatgaccaa ccggaacaga
     4621 tctagaatta ccattgtgac tgaaaacaca gcagtattct gggcaatagc ctttggtttt
     4681 ggatatgcag ggagcatcac gattatggct gacctctcta ccgatttgat aggagacctt
     4741 ccactaatcg gcctcctcag caagcaattc ggcataggaa gtattgcatc gacacttggc
     4801 ataggccacg ttcta
//
LOCUS       DUKB01000160            3784 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_167914, whole genome shotgun sequence.
ACCESSION   DUKB01000160 DUKB01000000
VERSION     DUKB01000160.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3784)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_167914"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..>695)
                     /locus_tag="HA345_05265"
     CDS             complement(<1..>695)
                     /locus_tag="HA345_05265"
                     /inference="COORDINATES: protein motif:HMM:NF014081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HIH84799.1"
                     /translation="KIFMGSSTGDLLVHEQEHLENIFANTGGIIATHAEDENRLQNRI
                     PQFEHRTDIAAHAECRDVECALLATKRASALAKDYDHRLHIVHLTSGSEANWLASNKG
                     ELITTEVCTQHLTFDQDDVEKLGVRALMNPPIRYTEDRDTLWKRLKDGTIDCVVTDHA
                     PHTLQAKSIGYPKAPAGMPGVETSLPLMLTHAMDGKCSVSDVVRWMCAGPAKVYGMEN
                     KGSLIEGYDGDLT"
     assembly_gap    696..997
                     /estimated_length=302
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<998..1465)
                     /locus_tag="HA345_05270"
     CDS             complement(<998..1465)
                     /locus_tag="HA345_05270"
                     /inference="COORDINATES: protein motif:HMM:NF014081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HIH84800.1"
                     /translation="MTGNLLVQNAMMALPNGIVEGDLRVVNGTIHTVAPNGGLVPKDG
                     EFVIDATGLHLLPGAIDPHVHFRDPGNPEKEDLESGSRAAASGGITSFLDMPNTIPNA
                     TNRMELESKIALASEKAVTHHGFFIGATSNNVADLQSIEGMDGVCGIKIFMGSS"
     assembly_gap    1593..1902
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2019..2780
                     /locus_tag="HA345_05275"
     CDS             2019..2780
                     /locus_tag="HA345_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84801.1"
                     /translation="MDGRLRFGAVLVVLLFVGCAGEGTVSAVELNVSVSGEPGNVHIE
                     KSANNGTSAMNELRVTFDFLGTESSRGALTEYWLNPGDGGQRVSVNAAEASTLFRDYE
                     SHGVFQSVAGANDSGENSAEEEIRIVVNGAFYLNQTQPTGVDEPADLHIDAPSDNSVE
                     SPHSMSISSTITNVENFAQQFPPAADVEITWRLLDPTGTEIISYTQLINEGQSYTWTH
                     EETSPAVGGWTLEVSDSVSDENVQQETSVVVRYTE"
     gene            2934..>3784
                     /gene="radA"
                     /locus_tag="HA345_05280"
     CDS             2934..>3784
                     /gene="radA"
                     /locus_tag="HA345_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HIH84802.1"
                     /translation="MASKKKTATKKDDIDEEVIVIDVEDENEPTIEDLPGVGPATAEK
                     LREAGFDDLLAVAVMSPSELADQAELGEAVSSKIIQGAKKLANIGGFVSGTALLDRRK
                     QVQKLRSGAQSLDELLGGGFETQSICEVFGEFGSGKTQIGHQLAVNTLLPVDQGGLGG
                     EVFYIDTEDTFRPERIAQMANGIGLDPNEALERIHVARAYNSAHQMLLVDEIKRMSKS
                     VDVKLIIVDSLTSHFRAEYVGRGMLATRQQKLNRHLKELKQLSDIFNAIVLVTNQVMS
                     KPDAMWG"
BASE COUNT          793 a          730 c          818 g          831 t
ORIGIN      
        1 atgttagatc cccatcatag ccctcgatga gtgacccctt gttctccatg ccatacacct
       61 tcgcaggccc ggcacacatc caccttacca cgtctgagac actgcactta ccatccatcg
      121 cgtgagtaag catgaggggt agagatgttt cgacaccagg catacctgca ggggctttgg
      181 gataaccgat tgatttcgct tggagcgtat gtggggcgtg gtcagttacg acacagtcga
      241 ttgttccatc cttgaggcgt ttccatagag tatctctgtc ctcagtgtac ctaattggcg
      301 gattcattag tgcccgaact ccgagttttt caacatcatc ctggtcgaat gtcaggtgtt
      361 gagtgcatac ctcggtcgtg attagctctc ctttgttgga tgccaaccaa ttggcttcag
      421 atccactggt taagtgaacg atatgtaatc gatgatcgta atctttggcg agggcagaag
      481 cccgtttcgt tgccaatagt gcacattcta catctctaca ttctgcatga gcagcgatat
      541 cagttcgatg ctcaaattga gggatccgat tttggagccg gttttcgtct tcagcgtgtg
      601 ttgcgatgat gccgccagtg ttcgcaaaga tgttctctaa gtgctcttgc tcatgaacga
      661 ggaggtcccc tgtgctacta cccatgaaga tcttgnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnngct actacccatg aagatcttga
     1021 taccgcagac accatccatc ccctcgatac tttgcaaatc tgcgacatta ttcgatgtgg
     1081 cgccgatgaa aaagccatga tgggttaccg ccttctcgga agctaacgca attttcgatt
     1141 ctaattccat tcgatttgtc gcattaggta tggtgttcgg catgtcaagg aaagaagtaa
     1201 tgcctccaga agctgcagct ctgctcccgc tttcgaggtc ttctttctct ggatttccag
     1261 ggtctcggaa gtggacatgg gggtcgattg cacctgggag gaggtgcagg ccagtagcat
     1321 cgatgacaaa ctcgccgtct ttgggcacta gacctccatt aggagccact gtatggatag
     1381 tgccgttgac gacccgcaga tcaccttcta caatcccatt tgggagagcc atcatcgcgt
     1441 tctggacaag caggttgcct gtcatcagta actctctatg gtaacgactc aatgagcatt
     1501 ctcccctttc ggagtccttg aaataggggt ggcagacacg agtggctagc gaggtggggt
     1561 agtctggtta tcccgtcggg ctcataaccc ggnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nncgtcgggc tcataacccg
     1921 gagatcgatg gttcaaatcc atccctcgct accaattacc tctcgatata cgcagatgta
     1981 acgcttggtt tatgcagaac cgttgttgaa gaaacaacat ggatggaagg ttacgcttcg
     2041 gtgccgtcct cgtcgtcttg ttatttgttg gatgcgcggg tgaaggaact gtaagcgcag
     2101 ttgaactcaa cgtctcggtc tctggggagc ctggtaatgt tcacattgag aaatccgcca
     2161 ataatggaac ctcagcgatg aatgaactta gggtgacttt cgatttcttg ggtacagaat
     2221 ctagcagagg tgcgttgacg gaatattggt taaatcccgg tgatggcggt caacgagttt
     2281 cggtaaatgc cgctgaggca agcaccctct tcagagatta tgaatcacat ggagtattcc
     2341 aatccgttgc tggtgcaaat gattcaggtg aaaactctgc cgaagaggaa atccgaattg
     2401 tggttaatgg cgcattctac ctgaatcaga cacagcctac tggagttgat gagccggcag
     2461 atcttcacat tgatgctccg tctgataatt cagtagaatc tccgcatagt atgtccattt
     2521 catcgactat cacaaatgta gaaaattttg cacaacaatt tcctccagca gctgatgttg
     2581 agattacctg gcgactccta gatccaactg gaactgagat tatatcttac acgcagctga
     2641 ttaatgaagg ccagtcatac acttggacgc acgaggaaac ctctcctgca gtcggtggtt
     2701 ggacattaga ggtaagcgac tcggtttcgg atgaaaacgt tcagcaggag accagtgtgg
     2761 ttgtcaggta cactgagtaa tcagtttcat aatcgattga atatcgactg aaagtgaaaa
     2821 aaagcctaca caatggaaac taatgctgta atcgtgtgga tttgcaattg aggcctcctt
     2881 cgtttgttga tataccccgg tacgtggttg ggagacaacg caaggtgaat aggatggcta
     2941 gcaagaagaa gaccgcaacg aagaaagacg acatcgacga agaagtaatt gtgatcgatg
     3001 tggaggatga gaacgaaccg acgattgagg acctaccagg tgttggtcct gcaactgcag
     3061 agaagttgcg agaagctgga ttcgatgacc ttcttgcagt tgcagtgatg agcccatctg
     3121 agcttgcgga tcaggctgaa cttggtgaag cagtgtcctc gaagattatc cagggtgcta
     3181 agaagctcgc gaatatcggt ggattcgtta gcggcaccgc ccttctcgat cgtcgcaagc
     3241 aagtccagaa gcttcgaagt ggagcacaat cacttgatga gcttcttggt ggtggttttg
     3301 agactcagag tatctgcgaa gtgtttggcg aattcggtag tggcaagaca cagatcgggc
     3361 atcaacttgc tgttaacacc ctccttccag ttgaccaagg tggcctcgga ggggaggtat
     3421 tctacatcga cacagaagat acattccgcc ccgagcgaat tgctcagatg gctaatggaa
     3481 tagggcttga tccaaatgag gcactggaac gaatccatgt tgctcgtgct tacaactcgg
     3541 ctcaccagat gcttctcgta gatgaaatca agcggatgtc aaagtctgta gatgtcaaac
     3601 tcattatcgt ggattctcta actagtcact tccgtgcaga atatgtcggt cgtggaatgc
     3661 ttgctacacg tcagcagaag ttgaatcgtc acttgaagga actcaagcaa ctttctgaca
     3721 ttttcaacgc cattgtgttg gtaactaacc aggtcatgtc caagcctgat gcaatgtggg
     3781 gaga
//
LOCUS       DUKB01000161            4584 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_185854, whole genome shotgun sequence.
ACCESSION   DUKB01000161 DUKB01000000
VERSION     DUKB01000161.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4584)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4584)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4584
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_185854"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            65..499
                     /locus_tag="HA345_05285"
     CDS             65..499
                     /locus_tag="HA345_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32e"
                     /protein_id="HIH84803.1"
                     /translation="MHRAKQKPELDDETRKALATRDAQGRKQPKFRRQEWYRYKRLSR
                     SGWRKPKGYQSKQRLNMKYRTPMARVGYGKIKAARDLHPSGFEEVLVHNTEGLDGVNP
                     STQAVRIGRGVGNRKRSAIHDKADEMGIRILNRRPIEKRGDL"
     gene            496..975
                     /locus_tag="HA345_05290"
     CDS             496..975
                     /locus_tag="HA345_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015412332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HIH84804.1"
                     /translation="MMQITNQRRMAASILSKREGRTVGVHRIWIHPDYIDQVSSAVQK
                     EDIRELIDEGVIKARPIKGTSRGRARKADIQRAKGRRVGHGSRKGSKKSRTPKKEKWM
                     KTIRAQRRVLKDFREVGTLDPSQYRYYYRKAKGGSYRSIAHMRTNIELDGISIGGDE"
     gene            975..1490
                     /locus_tag="HA345_05295"
     CDS             975..1490
                     /locus_tag="HA345_05295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008083189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HIH84805.1"
                     /translation="MAVHGKNQRARYKRRRTGETDYRRRLKLLRGESPRAVVRISNTR
                     IIAQIVEFNLDGDNVRLQFTSSELRSHGWPKDASVKSVPSAYLTGFALGKKALSAGID
                     EAVLDIGLAASTRGNRVFSALKGMVDAGMHIPHSEEILPSDDRVNGEHINEKLAGAVE
                     KTRTKIEGAMS"
     gene            1487..2254
                     /gene="rpsE"
                     /locus_tag="HA345_05300"
     CDS             1487..2254
                     /gene="rpsE"
                     /locus_tag="HA345_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HIH84806.1"
                     /translation="MSEEFTIAPGLAWALGQVEDDSNAGGPRRRGPDPRLALREWVQN
                     GARTRLGRMVISGEITSFEQAISSRLPIREPEIVDAFFQPNLHVEMIGRPRRIQRMTD
                     SGQRTRFNVMVVVGNKDGVVGLATSKGKEVAATIQKATNKAKLNMISVRRGNGSWESG
                     GGPGRSVPMKITGRAGSTRITLMPAPTGKGLVIGETGRMILDMAGITDVWSSSKGQTR
                     TQYNFARATFNALKETNLLRISREDVERLHIARGGMS"
     gene            2254..2724
                     /locus_tag="HA345_05305"
     CDS             2254..2724
                     /locus_tag="HA345_05305"
                     /inference="COORDINATES: protein motif:HMM:NF004711.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HIH84807.1"
                     /translation="MAWLVIRARSDRGVERSIRETMGHLNLTRVNHAVIIPENDTYAG
                     MLQKVKDYVTWGQVSADSIATLLRERGRLIGDKPVDDAAISASTDHGDIASFAAAIAS
                     GDATMKDAADFKRVFGLHPPRGSKGWGGLKRAYTVGGALGHRGAAIEDLAARMM"
     gene            2735..3151
                     /locus_tag="HA345_05310"
     CDS             2735..3151
                     /locus_tag="HA345_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015492811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HIH84808.1"
                     /translation="MPSRTNKFRGRSRYHGRGKKAGRGAGKRGGRGNAGLNKHRLMTR
                     LKYMPDHWGMHGFNRDPSLRTVHNSVNVSVVENMLGDDDTINLGEMGIDKLLGSGRVT
                     RALHITVEHASARAVEKIEAAGGSVTLAEGDEWEEE"
     gene            3199..>4584
                     /locus_tag="HA345_05315"
     CDS             3199..>4584
                     /locus_tag="HA345_05315"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012564.1,HMM:NF022033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84809.1"
                     /translation="MVGRGVNTIGAVTMAVLYWGGLIYWRSDELFGTDSAAQMEAGYL
                     LLASVPYAFFFMWGLRNDLPEQMSDNPFLKYTKLYIWLLYVAGLFYWCILDSQNVGFL
                     LVGIMILGAGTAASIACLIYTGDESSRLYALRRLVDVYPSIQKPEGHVRFMSKLWTTT
                     LVLIVYFMMTNVMIFGLAESTLDIFSSFRAIMAGASGSIMHLGIGPIVTASIIMQLFA
                     GAKIINLDLQDSDDKQLYQGIQKLLVLFMIPIESIPQVYGFLDPHPDFIISYGEGWAQ
                     ALIVVQLFLGSYLVFLLDELVSKWGIGSGISLFIAAGVAQSTFVGTLSPLPTVAEAPI
                     SLDNPPSGTLPMIFYTLRTASNLEMTQGGAGGGGMFETMLLNHANPIAALVSSIVVFL
                     VVAYAESSKLELPLTHGKMRGHKGQYPIRLVYASNIPVILMAALLANVNMFTLLFWSH
                     PVLSTVPILGRE"
BASE COUNT         1056 a         1115 c         1254 g         1159 t
ORIGIN      
        1 cgacgatgac gacgacttcg acgacttcga tgatgattgg gatgatgatg atgaagatga
       61 ggaaatccat cgtgctaagc agaagcctga acttgatgac gagacccgta aggctctcgc
      121 tactcgtgat gctcagggtc gtaagcagcc caagttccgt cgtcaagagt ggtaccgtta
      181 caagcgcctt tctcgttcag ggtggcgcaa gccgaaggga taccagtcca agcagcgcct
      241 gaacatgaag tacagaactc cgatggcacg cgttggttat ggaaagatca aggcagcacg
      301 tgaccttcat ccatctggct ttgaagaggt tcttgtgcac aacactgagg gcctagatgg
      361 tgtcaatcca tctactcaag cagttcgtat tggacgtgga gtaggtaatc gaaagcgtag
      421 tgcaatccat gacaaggccg atgagatggg gattcgtatc ctcaaccgcc gccctatcga
      481 gaagagaggt gacctctgat gcagattact aaccagcgcc gtatggctgc cagcattcta
      541 tcgaagcgtg aaggcagaac tgttggtgtc caccgtatct ggattcatcc tgactacatc
      601 gaccaggtgt cgagtgcagt ccagaaagag gacattcgcg aactcattga tgagggcgtc
      661 atcaaggcgc gcccaatcaa gggtaccagt cgaggtcgag cccgtaaggc agacatccag
      721 cgtgctaagg gtcgtcgtgt tggccacgga agtcgtaagg gttcgaagaa gtcccgtact
      781 ccaaagaagg agaagtggat gaagaccatt cgggctcaga ggcgagttct caaggatttc
      841 cgcgaggttg gaactcttga tccgagccaa tatcgctact actaccgtaa ggccaagggc
      901 gggagttacc gttctatcgc gcacatgcgg accaacattg agttggatgg aatttctatt
      961 ggaggcgatg aatgatggcc gtacacggta agaatcagcg agcgaggtat aagcgtcgac
     1021 gcacaggtga gaccgactat aggcggcgcc tcaagttgct tcgcggggag tctccacgtg
     1081 ctgttgttcg aatcagcaat acacgtatca tagctcagat tgtagaattc aaccttgacg
     1141 gagacaatgt ccggcttcag ttcactagca gcgaacttcg ttctcacggc tggcctaagg
     1201 atgcatctgt caagtccgta ccttcagcct acctaaccgg atttgcattg ggtaagaaag
     1261 ccctctcagc aggtatcgat gaggcagtcc tcgatatcgg cctcgctgca tctactcgtg
     1321 gtaatcgcgt gttctctgct ctcaagggaa tggttgatgc cggaatgcac atccctcaca
     1381 gcgaagaaat tcttccatcc gatgaccgcg ttaatggcga gcatatcaat gagaagcttg
     1441 caggggcagt cgagaagact cgtaccaaga tcgagggggc gatgtcatga gtgaggaatt
     1501 cactattgca ccaggccttg cttgggctct tggtcaggtt gaggacgact ccaatgctgg
     1561 cggtccacgc cgtcgcggtc cagatcctcg cctcgcgttg agggaatggg tccagaacgg
     1621 cgcccgtact cgtctcggac gcatggttat cagcggagaa atcacctcat ttgaacaggc
     1681 gatttcttcc cgtctcccta ttcgtgagcc tgaaattgtt gatgctttct tccagccgaa
     1741 tctccatgtt gagatgattg gccgccctcg tcgtattcag cgaatgaccg actccggtca
     1801 gaggacacgc ttcaacgtca tggttgtcgt aggtaacaag gacggcgtcg tcggtcttgc
     1861 tacttcgaag ggcaaggagg ttgcagcaac tattcagaag gctactaaca aggctaagct
     1921 caacatgatc agtgttcgcc gcggcaatgg ttcgtgggaa tccggtggtg gaccgggccg
     1981 ttctgttccg atgaagatta ctggccgagc aggctccacg cgcatcacct tgatgccagc
     2041 acctactgga aagggtctcg ttatcggtga gaccggtcgt atgattctag acatggctgg
     2101 aatcaccgat gtctggtcaa gcagtaaggg tcaaacccgt acccagtaca acttcgctcg
     2161 agctactttc aacgctctga aggaaaccaa cctcctccgt atcagtcgcg aggatgttga
     2221 acgtcttcat atcgcacgtg gagggatgtc ctgatggctt ggctcgtaat tcgtgctcgt
     2281 agcgatcgtg gtgtagagcg atctattcgt gagactatgg ggcacctcaa cctcactcgt
     2341 gttaatcacg cggtaattat ccctgagaac gatacatacg ctggaatgct ccagaaggtc
     2401 aaggactacg tgacatgggg gcaggttagc gccgattcca ttgctaccct tcttcgtgaa
     2461 cgtggacgtt taatcggtga taagccggtc gatgatgcag caatttctgc atcaactgat
     2521 cacggtgata tcgcttcttt tgcggctgca atcgcttcag gcgatgctac gatgaaagat
     2581 gctgctgatt tcaagcgtgt tttcggactc catccccctc gtggaagcaa gggttggggt
     2641 ggactcaagc gagcgtacac tgttggtggc gctctgggtc accgaggtgc agcgattgaa
     2701 gatctcgctg caaggatgat gtgaggtgaa taatatgcca tcgagaacca acaaattccg
     2761 aggaagaagc cgctatcacg gccgaggaaa gaaggccggc cgtggtgcag gaaagcgcgg
     2821 aggtcgaggt aatgctggtc tgaacaagca ccggctcatg actcgtctga agtacatgcc
     2881 agatcattgg gggatgcacg gtttcaatcg tgatcctagc cttcgtactg tccacaacag
     2941 tgtcaatgtc tctgttgtcg agaacatgct cggcgacgac gacacaatca acttgggtga
     3001 gatgggtatt gacaagttgc tcggttctgg tcgagtaact cgtgctttgc acattaccgt
     3061 ggagcatgcc tctgctcgcg cagtcgagaa gattgaggct gctggtggtt ccgttaccct
     3121 tgctgagggt gacgaatggg aagaggagta actctgccaa tctaatgggg taggaagcga
     3181 gattcgggaa gtgagtgcat ggttggacgt ggagtgaaca ccattggtgc agtcaccatg
     3241 gccgtcttgt actggggtgg cctgatttac tggcgctccg acgaactatt cggaactgat
     3301 tctgcagcac agatggaggc tggatacctt ctcttggcta gtgtgccata tgctttcttc
     3361 ttcatgtggg gacttcgaaa cgacctgcct gaacagatgt cggataaccc cttcctgaaa
     3421 tataccaaac tctacatctg gctgctgtat gtcgctggcc tcttctattg gtgtatcttg
     3481 gactcgcaga atgtaggttt ccttcttgta gggattatga tcttgggtgc agggactgct
     3541 gcgtcgattg cctgcctaat ctatacgggc gatgaatcga gtcgcctcta cgctctcagg
     3601 cgtctggttg acgtatatcc ttcaatccag aagccggagg ggcacgtccg atttatgtcg
     3661 aaactatgga cgacaactct tgttctaatc gtctacttca tgatgacgaa tgtgatgatt
     3721 ttcggccttg ctgaatccac gctcgacata ttctcttcct tccgtgctat catggctgga
     3781 gccagtggtt ccatcatgca tttgggaatc ggtccaattg ttactgcatc gattatcatg
     3841 caactcttcg ctggtgcgaa gatcatcaat cttgatttac aggatagcga tgataagcaa
     3901 ctctaccagg gaattcagaa acttctggtt ctctttatga tcccaatcga gtcaattcct
     3961 caggtgtatg gtttccttga tcctcatccg gatttcatca tatcctacgg tgaaggatgg
     4021 gctcaggcac ttattgtagt acaacttttc cttggatcct atcttgtgtt cttgctggat
     4081 gagcttgtta gtaagtgggg tatcggttct ggtatctctc tattcattgc tgcaggtgtt
     4141 gctcagtcca ctttcgtggg gactctctct ccgctaccta cggtcgcaga ggcgccaatc
     4201 agcctcgata accctccatc aggaactctt ccgatgatct tctacactct ccgaacggcc
     4261 tcgaacttgg agatgacgca aggtggagcc ggaggagggg gtatgttcga aaccatgttg
     4321 ttgaatcatg caaatccaat tgctgcccta gtatcttcaa tcgttgtgtt cctagttgta
     4381 gcctatgccg agtcctcaaa actcgaacta ccattgactc acggtaagat gaggggtcac
     4441 aagggtcagt atcctattcg cctcgtttac gcttcgaaca ttcccgtgat tttgatggca
     4501 gcacttcttg caaacgtgaa tatgttcacg ttgctattct ggagccatcc agtgctttct
     4561 acggttccga tacttggccg agaa
//
LOCUS       DUKB01000162           26128 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_16625, whole genome shotgun sequence.
ACCESSION   DUKB01000162 DUKB01000000
VERSION     DUKB01000162.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 26128)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 26128)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26128
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_16625"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1275
                     /locus_tag="HA345_05320"
     CDS             <1..1275
                     /locus_tag="HA345_05320"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF015772.1"
                     /note="unique DNA polymerase that is similar to eukaryotic
                     polymerases; forms a heterodimer of the small and large
                     subunits; possesses polymerization and 3' to 5'
                     exonuclease activities; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HIH84810.1"
                     /translation="PIEKGILRAAHDITAFKDGTVRYDMIDVPVTHFRPREIGTSVEQ
                     LIKMGYTHDVRGNELVADNQILELYPQDFIPSRDGGEHLLKASQFIDDLLVRYYGLEP
                     IYNAKAIDDLVGQLGIALAPHTSGGVLCRLIGWTDASAGYAHTLFHAAKRRNCDGDED
                     CIMLLLDGLLNFSRKILPSSRGGQMDAPLTLTTRLNPMELDKEALHVDAGWSYSTEFF
                     EATKSMPHPKDLLGEVDLVLSRIGEIGAVRGYGYTHETSSLDDGPVNSAYKTLGSMAD
                     KMSAQLSLGRRLRGVDAQVVASSVIGSHLLPDVRGNLNAFSRQKVRCGSCNHSYRRMP
                     LAGKCIQMIDSIGGLHGHRSSGGEKSRCGGNLILTVSQGAVRKYLGVIDHVIDSFGID
                     DYTQQYVDWMAVSVESLFQNDRVTVFTLDDFL"
     gene            complement(1276..2160)
                     /locus_tag="HA345_05325"
     CDS             complement(1276..2160)
                     /locus_tag="HA345_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84811.1"
                     /translation="MTEKKTRSVATAIITFVLLNLIWTGALQATADQHIIAPGSDIVQ
                     DYPFTMPDLHGRDIPLHVMFTVEPVEGAADTDVVLMLEDSNGERTTLYSSSSEGSDER
                     WITMPPGPSMFILIVSNSTGQISIPKQHVVIDLETEMDLYGPIQVEGYIAANILALSL
                     LISDRAIRGWLKSRRRKRSNPMMRKLHEDWKATKQALSGGDAVDVEDLTSSLTASTQT
                     SSIGKRRAWSIEAKDVDESEHEKGDQDIEDAEAIADELDALGEGDESRLQGKAEIDED
                     LKTVSDLWDRMNDDKKRR"
     gene            complement(2157..2906)
                     /locus_tag="HA345_05330"
     CDS             complement(2157..2906)
                     /locus_tag="HA345_05330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84812.1"
                     /translation="MGPHEVRAIAMRVQDRVRAQFDWSLHQDLHVANLLCQRVTKESS
                     NRETWTVSGREESLESLIDRLEDGPIATVGAAAEPQEIETALSEGYRLVFADGSIGVI
                     GELSEKSQDEAWSNTLLLVSDGDGDPHIAEAAQRGILHAIHAHGDNENSLIAMLDRLV
                     ALETPPAILLTHQTPDRIDGMLNPGGFTDGDRAVCLCAFLGVPIANIRLIGYTTSEIG
                     RWTGTTNPIRKMRKLTFMQEVLDGLGAGGEL"
     gene            2966..4123
                     /locus_tag="HA345_05335"
     CDS             2966..4123
                     /locus_tag="HA345_05335"
                     /inference="COORDINATES: protein motif:HMM:NF016030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84813.1"
                     /translation="MPMPPHPPVIEDPRILARYPFLPQAVKHTRSILENNGVTMESLL
                     TDGWLSDIRRRGDLRVKESILHDDGIGVPTSDISTDLGRMTESLSFLYAMLVACSTFE
                     ERVTARWAEGEASRADAILGLDNESFDIIARTYISNLRSEQIDGALVYSIPMTDFIEL
                     GPRISGDYWRLPNRPLDHGWVTMNPHSGENSKQRLARLLKERIREDLRTRCDERMERI
                     DESFAERLSEPVGAVLTILQSRAKMDFNAGDATRSDWPPCMESAIAELAMGENVNHAG
                     RVFLAAMSAAIGIDIDQCAGFFSGAPDFNLDTTRYQIGHIYDREYTPAGCSRLKLDGR
                     CPVSKGDDSICDKPKMKHPLSYVWWKQRDRGQRPEEVQEESTTQDMESANP"
     gene            4157..5269
                     /locus_tag="HA345_05340"
     CDS             4157..5269
                     /locus_tag="HA345_05340"
                     /inference="COORDINATES: protein motif:HMM:NF016048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HIH84814.1"
                     /translation="MTRTLVLTIDRDNDLGIKAGLRGPVIGRKATLSAALRLGLADPE
                     ESDTNAILGALHHHDRILDSGEPNDTVEVAILTGDERVGARSDRAIAKQLEEVIAEFQ
                     PDCAILVTDGAEDEAVMPILQSRVRIDYVEKIIVRQSKGIEGTFYYIMKAIEDPKWRA
                     RLLVPLSVFMMIIGLGMIIPGGGVLIGAMPLFVGLWLLAKGLGAETQFERLIVDMRES
                     AMGGIVSSLLWAFASFAGLLAILEVYREIAQASSEMSGFEIGVEAMDSGLQWIVLASL
                     AVAMSMVVLRWRRGTLSGRIFQLVAGGAVIYAFAEASLDVARKIAQGETYELDPGVIY
                     SDWGLVLVTIVVWWMVRTGIRSWSTRQEIQGKFWGV"
     gene            complement(5270..5707)
                     /locus_tag="HA345_05345"
     CDS             complement(5270..5707)
                     /locus_tag="HA345_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84815.1"
                     /translation="MSDVPASVIAELNALDGYEKMLAIDRVTVEHGVSSDELLRLMEM
                     ALSGTTMSASEPEWDMSISRSKGSVDPMMETTPPPQTGAEALSEAHRYRMEYDPSSEG
                     RSRQSQVEQAIVCPACRSPLGIPSVRPIKVTCPQCMTETLFES"
     gene            5787..6149
                     /locus_tag="HA345_05350"
     CDS             5787..6149
                     /locus_tag="HA345_05350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011747585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2237 domain-containing protein"
                     /protein_id="HIH84816.1"
                     /translation="MHPSVNVLGTPLKTCNEEPLTGWFRDGCCNTDDSDRGMHTVCVV
                     VDEAFLTFSANVGNDLSTPRPEFRFPGLNPGDRWCLCATRWKEAWAEGCAPPVDLEAT
                     HVRTLEVIDLSVLEMYAM"
     gene            6192..6899
                     /locus_tag="HA345_05355"
     CDS             6192..6899
                     /locus_tag="HA345_05355"
                     /inference="COORDINATES: protein motif:HMM:NF024809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84817.1"
                     /translation="MSDAAANVGTLYMLNTCPFTWKVRALLDYLDLPHDRVQVNPMRI
                     KKSVSFAGDWGKTPVWKMHDGEVVVDSTPIMKRIDKIHNDGQLASSSDLARRDEWIEW
                     ADLHVKNATIPILYGSIGSALSTTRSVSRHEKFGLITGRLYAWAGFPIMWGIIARKRT
                     KNTGMNPKQLWHHLLDQWTGEIGEQQFFGGDEPDLVDLIVYGYMRSIEMHPKAFRHIE
                     EHENGMVWFKRMKGVAA"
     gene            complement(6900..7787)
                     /locus_tag="HA345_05360"
     CDS             complement(6900..7787)
                     /locus_tag="HA345_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase regulatory-like
                     domain-containing protein"
                     /protein_id="HIH84818.1"
                     /translation="MGDRKEDSSDPPIVMIPEEEPVFSSTGATLQLPKDAPRDPRMHA
                     ALLFILVAGIFGVINGLDFIEGDRGLVTDRGFIYSQTQTASIISQSLPGSAILTGTLT
                     LHDGSPGSNFTIEVVTTVVENGTQRITRPSNVTDAEGRFRLEGLNPGLMTMFVVNNTH
                     DSEGMTHRIILSPGALFEPYGFTHLDVDYESPTVFDAVEEENNGLMRWIDLSEEQRGR
                     ELYDPTAAAVYDIVGTIFFGIGLIAIVLGIMGWKAKSALLLRTAGGLVFFSQGHFYSA
                     CCLGMLAMISTYGLNISDG"
     gene            complement(7810..9198)
                     /locus_tag="HA345_05365"
     CDS             complement(7810..9198)
                     /locus_tag="HA345_05365"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014036.1,HMM:NF024566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HIH84819.1"
                     /translation="MKDPDWDPVPLIAGSGGVLTEELRTSHAGRRALMLTRNENPTEF
                     LALADTMDVQVVEIVAQRGRSDKRTHLGRGRLEAIRDELRMAPESHPWFGIDLVLVNA
                     NLSARQLVNMTDMLQCETWDRVRLLLELFTQHASSVEARNQVRIARLNADRNVLRELV
                     NRETTGERLGYGAGGRTGWNVALNALNRELKTLRGRQRRYSRAIKERQRQRRASGART
                     VGLAGYTNAGKSSLFASLCGKPVIVEDRYFSTLETTVGRMQFSPRVLLVDTIGFIDDI
                     PSDLLDAFSATLKESLECDLLLLLLDCSDPVEEVVRKFETSRRELFDRSDPDAGSYDL
                     LVVLTKQDSCSESHVVAVNHALDSFGVSETILTSSTSSEGIEHLRSNILTRLHGPPIS
                     FLVSPPNSASDRPIAAIESEIRRNSMVGERRMSDEGLHLVAWIDPADWVRLNRSLGDR
                     IHREVDQPSQAE"
     gene            complement(9195..10181)
                     /locus_tag="HA345_05370"
     CDS             complement(9195..10181)
                     /locus_tag="HA345_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013015071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HIH84820.1"
                     /translation="MSGLSESVQGRILEWYDVEARDLPWRSDPDPWAVLVSEFVLQQT
                     QMKVGLAHWYRMMERFPTIESMAAAPVEDVLEAWQGCGYYARARNLHALSVEIISRNP
                     PSLPSNPRDLQNLPGIGPYTSAAVSSIAFGYPVAAVDGNIRRIYARISAEERPKDRDT
                     QTWADESLYRNRPGDWNQALMELGATVCTPRRPLCGRCPAEDVCLAVKTDEPTKFPAS
                     RKRNSKRIDGHALVIRTPFGIHLTKRKGSRLGGLWGVPITEDPKGIDVLCDNHHVEKH
                     RSVGRVRHAFSHRDWNLEVWVAERNDGGLDPASVPISKLDERILETAGWIRA"
     gene            10235..10471
                     /locus_tag="HA345_05375"
     CDS             10235..10471
                     /locus_tag="HA345_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84821.1"
                     /translation="MTAHEAVLVLRGESIERLSTLKASISVDDPESFSIKMDHEAVEM
                     HIIVQSNNMRTLRNTMDDILACIAAVETTLEQIE"
     gene            10518..11549
                     /locus_tag="HA345_05380"
     CDS             10518..11549
                     /locus_tag="HA345_05380"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013857.1,HMM:NF014769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84822.1"
                     /translation="MTEFGDSETPDVGEEVLATTAHRVRLPHDRASDLWIDDSPSPIL
                     TESMERWTRTLLEDDGYRPIGQTRVLVRARVIAKQEGVLCGSHVVNHLLRTRLPEVQM
                     SWHKREGERFQIDDTLLILDGAALEILAVERVLINLIGRMSGIATETERWVNRLNGLR
                     VASTRKTAWGILDKWAIHIGGGLTHRLRKSDAWMIKENDQTVLKMNLEESKKETMQKW
                     ITTTDLNKHGAFTVIEVDSISMANVIAKAWCNRMMETEEDRVLVIMLDNMGPAKTKEA
                     VLDIQSHGYNQWICTEASGNIRFEDLDDWMTTGVDVLSTSSMNMGVRSIDISMLIDES
                     GVRTLPSED"
     gene            11575..12315
                     /locus_tag="HA345_05385"
     CDS             11575..12315
                     /locus_tag="HA345_05385"
                     /inference="COORDINATES: protein motif:HMM:NF010324.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate/pantothenate synthetase"
                     /protein_id="HIH84823.1"
                     /translation="MGEVPESHPRHASLMSRQRLVDAMKEGLLADSALIAHGRGEAFD
                     YLLGEQTMPGATMAIDEVAARLLIANQPVISVNGNTVALACDELLQIADTLGCPLEVN
                     IYYRTPERMTALLGRIRSRATALNLNHVEILGANPNGQIPGLDGPRANCCQEGILGAD
                     VVLVPLEDGDRCEALVAMGKQVFVIDLNPLSRTAKTATICIVDEVQRTSSALLSRLKN
                     PKDSDPHFDADASRRAVLEVMLGALERD"
     gene            complement(12312..13505)
                     /locus_tag="HA345_05390"
     CDS             complement(12312..13505)
                     /locus_tag="HA345_05390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010311277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate dehydrogenase family
                     protein"
                     /protein_id="HIH84824.1"
                     /translation="MALHRITTLPGDGTGREVMTEAMKLLQTIESNSPMTFQITEIQC
                     GGQHYLETGEEWPEGSFEYCRDQSDAILLGAIGWPGATMPNGDLAGGQVILGLRSGLD
                     LYANVRPIKLYKGIQHKIHGGFKQVWSPGLVDMVVVRENTEGLYQTLLSRSSHAAQGI
                     PYPSVPEIEIPGVDGEFAWDPRPISRKGSERVIRFAFDIAERRSGTPSDGTSRVSCID
                     KSNVTRGCQLFRSIYLEIAENHPDIETDMAYIDAFTMWLVRQPEFYDVVVTSNMFGDI
                     ATDLASTLQGGMGMAASANIGDDHMMFEPVHGSSPKYAGKGVVNPIAMLSSVQMMLDW
                     LGRRSGDTDATVAAEIVESAIENQVSEGGTLTYDLGGEASTSEVSEAICARVASMLAT
                     HYTSA"
     gene            13622..14218
                     /locus_tag="HA345_05395"
     CDS             13622..14218
                     /locus_tag="HA345_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84825.1"
                     /translation="MDELGSSEDSTSGRINPSSLPQVVRDLWESMLRIDPNWSFEDWL
                     ISRAEEESELLVSKLNDEALRLEHRRHRVERLIERVQRQISEPKRISDPHQKNLFEAY
                     NEPVKIPIKIQKAEIPIDETIDDIEDGIDDPILHICCEHILQEMEEASDGAAHEDDLM
                     EICAAVGFDESEVREAIEHLVVANQISHLGDGLYGFAD"
     gene            14276..15046
                     /locus_tag="HA345_05400"
     CDS             14276..15046
                     /locus_tag="HA345_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84826.1"
                     /translation="MPRTRALLIGIAGAGLLIQEYPRGHFAAVTFGIVLMILADAPHH
                     ASRHRHFRKMSSMQSKDMERLNRQLRSNRRAYIDLEHSAQTMQAELERRDAVGAPEAR
                     RLLDEQRRAMSLQSEALKEAKRMLSQQHRVMQQNQSLLDRISTTQDNGVERWEQMMVS
                     IERLLDGQARRTETVHARVMADTRRSNDEVTRNNRTIQDILSEIVTQMARIPREQTIQ
                     LNDSVLMSEAKDAIGIRLPELPTQNIDSWVRALEEDLG"
     gene            15058..15738
                     /locus_tag="HA345_05405"
     CDS             15058..15738
                     /locus_tag="HA345_05405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84827.1"
                     /translation="MSDIDEGIGEGLASLEDRARNAEFEFARTMRRLVIGIVTQIALV
                     GLIIMMFDIGPLIDAVGVPVAFLIGFLFPMLLIIAWAGANHQVRMEPMVEDQEHEVET
                     VVDQIIEEAPDNPLQKTMSPSGGAVYMTRGRDPKGVAEGGGADTFDPRNPQIDGMDLR
                     PEHEGLEGELRKSHEVKIEADEIVAEEVQKAWEEAEKNDPDLIEAGVERLGDLVGTGH
                     FGGRTPEN"
     gene            15786..16565
                     /locus_tag="HA345_05410"
     CDS             15786..16565
                     /locus_tag="HA345_05410"
                     /inference="COORDINATES: protein motif:HMM:NF012695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar nucleotidyltransferase"
                     /protein_id="HIH84828.1"
                     /translation="MAPPPMKAVLVAGGLGSRMLPFTRYMHKAMLPLYHRPVIDFALG
                     FIRRAGIKDITIIGNRFIGQIAQHVGVGLPGENIHYVIEESPQGVAYALNLARPHIEG
                     SRLMVYFSDNITTAELTGEVRHWKTSDEPPGCLLLGRSVEDPRAFGVAVLDEEGKLTD
                     IVEKPENPPSDLAIGGIYLYDERFWELLDECYGTENDGFSITDLNRKYIELGAAELKD
                     LGDEEWLDCGTTDALLRASGLAKEGRLSPEPCNRRENDPTS"
     gene            16611..17435
                     /locus_tag="HA345_05415"
     CDS             16611..17435
                     /locus_tag="HA345_05415"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013175.1,HMM:NF015666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HIH84829.1"
                     /translation="MKVGIIGAGIVGGAIEHWFGPVHDLFIHDPVRGTTLADVTDHVD
                     MAYIAVPTPMSDTDGSCDLSIVTSILSDLPDGFTAVIKSTVVPGTTQRFHEEYPHLKI
                     AYSPEFLVERRHLEDFGNQDILVCGTHHADVAERVFQQHREAGVIKSDQTFHVEPAVA
                     EMVKYSKNTFYALKVIFANQMYDICQGLNADWYKVSEIITAPQAQPIGPSHLDPIFGL
                     NRGFGGKCLPKDSNALRVLAGNLDVKYDWMEAIQSDNARLRSILTGKPSDVTTNDD"
     gene            17483..17920
                     /locus_tag="HA345_05420"
     CDS             17483..17920
                     /locus_tag="HA345_05420"
                     /inference="COORDINATES: protein motif:HMM:NF016955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerB family tellurite resistance protein"
                     /protein_id="HIH84830.1"
                     /translation="MLPDTLHTLPQNERFAYAKLLAYITKVDDEVTVDEMAMFEQRMG
                     TALLSPNQRSAIRDYLKNPPTLKECISDLKDSTDGRAGKLALRDAIMMSAADGTVDED
                     EFDVLGKIATGLGMKESVVDDLLDWVMEGYDWMDRGLTILNAS"
     gene            17930..18394
                     /locus_tag="HA345_05425"
     CDS             17930..18394
                     /locus_tag="HA345_05425"
                     /inference="COORDINATES: protein motif:HMM:NF016291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF533 domain-containing protein"
                     /protein_id="HIH84831.1"
                     /translation="MLPDVIDRLDEHDREGYVRILISLAGADGTLVREETAAIEAAMG
                     RALIPPHRRNVFRQELKRSIDLSDIIDGMGVPALRLALRDAAIVGACDGEFQEEEIEF
                     LKRLAVHADVDEDTLAKVLKWVDQGWTWIEKSRRLLGIRNQDLGKYAENDDD"
     gene            18560..19144
                     /locus_tag="HA345_05430"
     CDS             18560..19144
                     /locus_tag="HA345_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008084763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide kinase"
                     /protein_id="HIH84832.1"
                     /translation="MGVHPKIGITGLPRSGKSAVMQKVIEMLVNERTGEIRARGENPD
                     TIRIIAGMRTEPLIEDGERKGYRCIDIVTGEEAVMAHKDIDTRTRVFGFGIDKETMNT
                     VAIPAIRTAMEEAEVIVIDEIGKFSVESDEFVEIVRAALELDKPTVMTLAKKSRHPLL
                     QDIRRRDDARILEVTPVNRALLPYKIHKLMRETY"
     gene            19185..19565
                     /locus_tag="HA345_05435"
     CDS             19185..19565
                     /locus_tag="HA345_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84833.1"
                     /translation="MDTPARTIERLFTLATVGSAFSAGFLLLESSTCNDSLDVAITCT
                     ESASGDVGRVLLAVATLLGLLVTQAWFARSSNRSSWISMIFDDRTEEEVRLDADSVTD
                     DVEDMGEGWAKLEEQMLTSRIEEE"
     gene            complement(19567..19643)
                     /locus_tag="HA345_05440"
     tRNA            complement(19567..19643)
                     /locus_tag="HA345_05440"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19607..19609),aa:Cys,seq:gca)
     gene            19778..20230
                     /locus_tag="HA345_05445"
     CDS             19778..20230
                     /locus_tag="HA345_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84834.1"
                     /translation="MTPAEGEGQLQVQVFLDGISDLDLNTKTRDWYTMDVSTMIQDID
                     IVDHEIDDETGCSLLFLRNSVIHCCPDSQRIKHYPKHLIHCFVENRSGRKPLSETSNT
                     SKEPVFFAELFSISPCEEQLNWSVGSHLEGDVPRLQARTARWLRYLNS"
     gene            20270..21520
                     /gene="eno"
                     /locus_tag="HA345_05450"
     CDS             20270..21520
                     /gene="eno"
                     /locus_tag="HA345_05450"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005391845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HIH84835.1"
                     /translation="MDAYITGLMARAILDSRGNPTVEVECFVNGGLAGRAAVPSGAST
                     GSHEAVELRDGGDRWMGKGVDLAVQNVVEVIQEALVGLRVDDQATIDQCILDLDDSPN
                     KATLGANATLGASLACLHAGANIHSQPLWRYVGGLSGGSLPVPLMNILNGGAHAASDV
                     DVQEFMVVPHGFDDFSEALRAGVETYHSLRSVLKEKGLLGGIGDEGGFAPNLPSNAEG
                     LGLLTQAIERAGYSPGDELGIALDVAAQEFLHDDGYHIDGAVLSGDQLAETYATWADE
                     HPIVSIEDPFGEDDWSSWSTLTAEIGDRVQIVGDDLFVTNVNRLSDGIDRAAANAILI
                     KPNQIGTVTETLECIEMAKSHGFGTVMSHRSGETSDDTIADLAVGARTGQIKTGAPAR
                     SDRTSKYNQLLRISESCTEFLPPF"
     gene            complement(21522..22652)
                     /locus_tag="HA345_05455"
     CDS             complement(21522..22652)
                     /locus_tag="HA345_05455"
                     /inference="COORDINATES: protein motif:HMM:NF012382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HIH84836.1"
                     /translation="MPEVPERFSNLAIGFTPYLVKPSEDVIRWTVGEPGFDTPRPVVD
                     AAIEALEAGQTKYTRGPGSMELCTQISEQLNRMWGLETTPETVMVTPGAKQALLYAMM
                     VTMEAGDELLVPAPAWPTYEGQTALLGINIVFTETNDLFHPMIESMRSSITDKTKAIL
                     LNSPNNPTGAVYTPEEIQAIVALAVEHDLWIISDEIYARLLWVDWPHISPASIPGGAE
                     RTMIVTGFSKSFAMTGWRLGVLTGPKEAMKAAFACQANANSHVPTFLMPAASVALTQD
                     EAVDEFCIQYNRRRNILMEGIASIPGMDLVEPEGAFYAFIDITSSGMTSIEFADRALD
                     EARVQLIPGSLIEGGEGFVRVSYATDEADIREGIARLKAWLS"
     gene            22762..23151
                     /gene="gcvH"
                     /locus_tag="HA345_05460"
     CDS             22762..23151
                     /gene="gcvH"
                     /locus_tag="HA345_05460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008376561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HIH84837.1"
                     /translation="MSDIPEGLKYTKEHEWVRVDGDEIVIGITDFAQNALTDVVWVEM
                     DPDMEGSTVAEMEAFCSVESVKSVSEIYAPIAGTISALNLDLEDAPETINQSPYEDGW
                     IARFRPNNMVDVEGLLDAAGYAAVIGE"
     gene            23160..23699
                     /locus_tag="HA345_05465"
     CDS             23160..23699
                     /locus_tag="HA345_05465"
                     /inference="COORDINATES: protein motif:HMM:NF012304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84838.1"
                     /translation="MVDTPPVSIYIDGSCIENRNVTADTAAGWGFVVVIGDRGVGRGT
                     GDLMHESSGPVITNSNSDEWLGAEVGSNNTGELSAMVHALRWILVNCPKGEVTIRADS
                     MYALRITDGSWSAKANKKLAYLSQELWKEVAQVVDLHNAHVKAHSGHRWNERADHLAY
                     RGQGDDDPIPLQFWRPGQR"
     gene            complement(23711..26104)
                     /locus_tag="HA345_05470"
     CDS             complement(23711..26104)
                     /locus_tag="HA345_05470"
                     /inference="COORDINATES: protein motif:HMM:NF017183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84839.1"
                     /translation="MPTSLTFLNSSIVLTNNTMMIPEEASLTGPGEILTWELEGTLPL
                     GIEFNPNNGTISGTPTELWPMTNYTIWANNTGGPISLQIDITVLDQLPTITYNHASLV
                     LTNNTADSRLPLNPVLSGPGEILTWKISGALPNGLVFSQSNGSLNGTPVELWPSTIYT
                     IWANNSGGHRTFSLTLAVIDQLPTNIVFDGGSIILTNNTVMIPETPSITGPGEITSWY
                     VNGTLPSGVNLDSNTGIISGTPTELWPVQTYTVWANNSGGSVEFTFDLTVIAEHPDVT
                     FSSTSLSLTVGQAMSPLLPSSDGGEVVSWEIEPALPDGLSMDSVTGEISGTPTTPQST
                     ESYTIRANNTGGSVTKTLTITIVDVPATPSITTTEITLTIDEAMAPFTITIVGGEVVE
                     WGLHPELPLGLTFNEETGSISGIPTVLSEEQTYTIWANNSGGSQSVSFTIEVVDEPPI
                     IEYVEEEFVLYANVTEVSIEAISSGGDVIGFSVSPELDNGLQFSDTNGTIWGIPDTTH
                     ERMTFTVTATNSGGSSVSTVNITVLPSVGCTDSLAENYDPIAIEDDASCVYTDTDGDG
                     VPDIDEVFGCTDPDAFNHNAAATEDDGLCIAVLEVVYPEVTLNLTVDESVVAMIPTVY
                     NQTVETWTVEPELPDGLEFNRLIQNGVLILDKGTIQGIPTETIDARIFTVTATDLDTG
                     QTATILLTIEVIDPNAISVGNITPIPEPITDTDGDGYEDDFELECGTDPENSAQYPLS
                     DDLATCKVGLTGPDTPPGNLFLWFLMPLFILILIALYTMIFLIKHKDEEDKEDEKSS"
BASE COUNT         6841 a         6315 c         6521 g         6451 t
ORIGIN      
        1 ccaattgaga aggggattct acgagccgca cacgacatca ccgcattcaa ggacggtaca
       61 gtccgctacg atatgatcga tgttccagtt acacatttcc gacccagaga aattggcaca
      121 tctgtcgagc aattgatcaa gatgggatat acacacgatg tgagaggtaa cgaactggtt
      181 gcagataatc aaattcttga gctctaccct caggacttca tccccagccg agatggtgga
      241 gaacatctac tgaaggctag tcagttcatc gacgatttac tcgttcgata ttatggactc
      301 gaaccgatat acaatgccaa ggcaattgat gatctcgttg gacaattagg gattgctctg
      361 gcaccacaca cttctggtgg cgtcctctgt cgcctaatcg ggtggactga tgcctctgca
      421 ggctatgctc acacgctctt ccatgctgct aaacgccgga attgcgatgg agatgaagat
      481 tgtattatgc tactcctaga cgggctgttg aacttcagta ggaaaattct gccctcatca
      541 aggggtgggc agatggatgc gccgctgact ctgacaacac gacttaaccc gatggagctc
      601 gacaaggagg ctctacacgt ggatgcgggg tggtcctatt ctactgaatt ctttgaagca
      661 acaaaatcga tgcctcatcc aaaggatttg ctcggggagg tagatcttgt cctctcccga
      721 atcggagaga tcggtgcagt ccgtggttac ggttacactc acgagacatc atcactggat
      781 gatggacctg tgaactctgc atacaagacg ttgggtagta tggcggacaa gatgagtgct
      841 caactatctc ttggacgccg acttcgagga gttgatgccc aagtcgttgc ttcttcagtc
      901 attggctccc atttactccc agatgtacgt ggtaatctca acgcattcag tcgccaaaag
      961 gtccgatgtg ggagttgcaa tcattcctat cgccgtatgc ccctagccgg taagtgtatc
     1021 cagatgattg attccatagg tggtttgcat ggccatcgct cctctggcgg ggaaaagagc
     1081 cgttgcggag ggaacctcat cctcacagta tcccaaggtg cagtacggaa gtatctgggt
     1141 gtaatcgatc acgtgattga cagttttgga attgacgact acacccagca gtatgtcgat
     1201 tggatggcgg tcagtgtaga atctctcttc cagaacgacc gtgtgacggt attcacacta
     1261 gatgacttcc tctgattagc gacgtttctt atcgtcattc atccgatccc aaaggtcact
     1321 cactgtcttc agatcctcat cgatttccgc cttgccctga agacggctct cgtcaccttc
     1381 accgagggca tcaagctcat cggcaattgc ttctgcatct tcaatatcct gatcgccctt
     1441 ctcatgctct gactcatcta catccttcgc ctctatcgac cacgcacgtc tcttcccgat
     1501 gctgctagtt tgagtcgagg ctgtcaacga tgatgttaga tcttcaacat ccacagcatc
     1561 acctccactc agagcctgtt tagttgcctt ccaatcctca tgcaacttcc gcatcattgg
     1621 attggaacgc ttccttcgcc tcgatttgag ccaacctcga atcgctcgat ctgagatgag
     1681 aagtgagaga gcgaggatat ttgcggcgat atatccctcc acctgaatgg ggccgtagag
     1741 atccatctcg gtctctaaat cgataacaac atgctgctta gggattgata tttggcctgt
     1801 gctattggac acaattagaa tgaacatcga gggacctggc ggcattgtaa tccagcgttc
     1861 gtcactccct tctgaggaag aagagtagag ggttgtacgt tcaccattcg aatcctccag
     1921 catcaagaca acatcggtgt cggctgctcc ttctactggc tcaacagtga acatgacatg
     1981 caggggaata tctctaccat gtaaatcagg catcgtgaat ggataatcct gaacgatatc
     2041 gcttccaggt gcgatgatat gttgatccgc tgttgcctgt aatgcccctg tccatatcag
     2101 attcaggaga acgaaggtga tgatggcagt cgccacagaa cgagtcttct tttctgtcat
     2161 aactcccctc ctgcacccaa tccatcgagg acctcctgca tgaatgtgag ttttcgcatc
     2221 ttgcgtatag gattggtagt gccggtccat cgaccaatct ccgaagttgt gtaaccaatt
     2281 agacgtatat tggctatcgg tactccaaga aaggcacaca aacatactgc cctatcacca
     2341 tcggtgaagc cacccggatt gagcatgcca tcaattcgat ccggtgtctg atgagtgaga
     2401 agaatcgctg ggggtgtttc aagtgcgacc aagcgatcaa gcatcgcaat cagtgaattc
     2461 tcattatcgc catgagcgtg aatagcatgc aagatcccac gttgggctgc ttcggcgatg
     2521 tgtggatcac catcgccatc gctgaccaga agcaacgtgt tggaccatgc ctcatcctga
     2581 gatttctcag acagttcacc tatcacccca atagagccgt cagcgaatac caaacgatat
     2641 ccttcagata gggctgtttc gatttcttgt ggctcagcag ccgcaccgac tgtggcaatt
     2701 ggtccgtcct caagcctatc aatgagggat tcgagtgatt cttcacggcc agaaacggtc
     2761 cacgtctctc gatttgagga ttccttagtg actcgttgac agagaagatt ggccacatga
     2821 agatcctggt gtaacgacca atcaaactgg gcccgaacac ggtcttgaac gcgcatagcg
     2881 atagccctga cctcatgagg acccatgtcc ggtcttcacc ggtcgcgttg aagaacccca
     2941 gtgttcaatc atagagtgaa tccggatgcc gatgccacca catccacctg tcatcgagga
     3001 ccctcgcatc cttgcccggt accctttcct accacaggct gtgaagcata ctcgtagcat
     3061 ccttgagaac aacggagtca ccatggagag cctattgaca gatgggtggt tgagcgatat
     3121 tcgaagaaga ggagacttgc gtgtcaagga atcaatacta catgacgatg gcatcggagt
     3181 cccaacatcg gatattagta ccgatctcgg tcgcatgact gagagcttgt ctttcctcta
     3241 tgcaatgctt gtagcttgtt cgacctttga ggagcgggtt actgcccgat gggctgaagg
     3301 agaggcgagt cgggcagatg caattcttgg attagataac gaatcattcg atatcattgc
     3361 ccgtacttac atctcgaatc ttcgatctga acagatagat ggagcattgg tctacagcat
     3421 ccctatgact gacttcatcg aattggggcc acgtattagt ggagattact ggcgacttcc
     3481 aaaccggcct ctcgatcacg gctgggttac aatgaatccc cattctggag agaactcaaa
     3541 acaacgactt gctagattgt tgaaggaaag aatccgagaa gatctaagga cgcgttgtga
     3601 tgaacgtatg gagcgcatcg atgagagttt tgctgaacga ctaagtgagc cagttggtgc
     3661 tgttctaact atccttcagt ctcgtgcaaa aatggatttc aatgcaggtg atgcgactcg
     3721 ttctgactgg cccccttgca tggagtcagc aattgccgaa ctcgctatgg gagagaacgt
     3781 caatcatgca ggtcgtgtct tccttgcagc aatgtccgct gcaataggta tcgatattga
     3841 ccaatgtgct ggattcttct ctggtgctcc ggattttaat ctggatacaa cacgctacca
     3901 aatcggccac atatacgacc gagaatatac tccagcaggt tgcagtcgac taaaactcga
     3961 tggacgctgc ccggtctcca aaggagacga ttccatatgt gacaaaccga agatgaaaca
     4021 tccactatct tacgtctggt ggaagcagag ggaccggggt cagcgaccag aagaagtgca
     4081 ggaagaatcc acaacgcaag acatggaatc tgccaaccct tgattaggac agcccgataa
     4141 gagcccatcg aagcacatga cacgaacgct agtgttgacc atcgaccgag acaatgatct
     4201 cgggattaag gccggcctta ggggacccgt catcggtagg aaggcgaccc tcagtgctgc
     4261 acttcgacta gggcttgctg atccagagga gagcgataca aatgccatcc tcggagcatt
     4321 gcatcatcac gaccgaattc tcgattcggg tgagccaaac gatacggtcg aagttgctat
     4381 tctgactgga gatgaaagag ttggtgcccg gtcagaccgg gcaattgcaa aacagttgga
     4441 agaggtcatc gctgaattcc aacctgactg tgcgatattg gtgactgatg gagcagaaga
     4501 tgaagcagtg atgcctattc tgcagagtcg ggttcgaatc gattatgtcg agaaaattat
     4561 cgtacgtcaa agcaagggta tcgaagggac gttttactac atcatgaagg caatcgagga
     4621 cccaaaatgg cgagctcgct tgctagttcc gctctctgta ttcatgatga ttattgggct
     4681 aggcatgatc attccaggcg gaggtgtcct gattggtgct atgccattat tcgttgggct
     4741 gtggctactc gccaagggcc tcggtgcaga aacacaattc gaacgcctca ttgtcgatat
     4801 gcgagaaagt gcaatgggtg gcattgtttc ctctctattg tgggcctttg cgtcgtttgc
     4861 aggcttactc gctattcttg aggtatatcg agagattgct caagctagtt ccgagatgag
     4921 tggatttgag attggcgtgg aagcaatgga tagtggttta cagtggattg tgctagcctc
     4981 ccttgctgtg gctatgtcca tggttgtcct acgctggagg cgtggtacgc tatcaggacg
     5041 aatcttccaa cttgttgcag gaggggctgt aatctacgca tttgcagaag cgagtctcga
     5101 tgtagcacgt aaaattgctc aaggcgaaac ctacgagctt gaccctggag taatttacag
     5161 cgattggggg ctcgttctag tgactattgt cgtttggtgg atggttcgga ctggtatacg
     5221 ttcttggtcc actcgacaag agattcaagg caagttctgg ggagtctaat caggactcaa
     5281 ataatgtctc agtcatacac tgtgggcatg tcaccttaat cggtcgaacc gaggggatac
     5341 cgagtggtga tcggcaagca ggacagacaa tggcttgctc gacctgcgac tgacgtgacc
     5401 gcccctcact actcgggtca tactccatac ggtatcgatg ggcttcagaa agcgcttcgg
     5461 ctcctgtttg aggagggggg gtggtttcca tcattgggtc aacgctccct ttggatctcg
     5521 aaattgacat atcccattcc ggttcactag cgctcattgt cgttccagat aatgccattt
     5581 ccataagacg aaggagctca tctgatgata ctccatgctc gaccgttaca cgatctattg
     5641 caagcatttt ctcatatcca tctaacgcgt tcaattctgc gatgacagag gcaggcacgt
     5701 cactcatggg ggtcactcat acccgtctca cttgagggtt gaggatggac gagaactcat
     5761 ctatacgaat catcctcgga ttacacatgc acccatcagt caatgtcctc ggtaccccgc
     5821 taaagacctg caacgaagaa cctctcactg gctggttccg tgacggatgt tgcaacactg
     5881 acgattcaga tagaggcatg cataccgtct gtgtagtggt ggatgaagcc ttcttgacat
     5941 tcagtgctaa tgtgggtaac gacctttcaa caccacgacc agaatttcga tttccaggac
     6001 tcaatccagg agacagatgg tgcctgtgtg caacgcgatg gaaggaagca tgggctgagg
     6061 gatgtgctcc tcctgtcgat cttgaagcca cgcatgtaag gacgcttgaa gtgattgatt
     6121 tgtctgtgct tgaaatgtac gctatgtgaa ggaaacgaac cgttcacaaa ggatgaggga
     6181 gacgatggat tatgtctgat gctgcggcca atgtcggcac attgtacatg ctcaacactt
     6241 gcccctttac ctggaaggtt cgggccctgc tcgattatct cgatctccct cacgaccgag
     6301 tacaagttaa tcccatgcgg atcaagaaaa gtgtctcctt tgcaggggac tggggcaaga
     6361 cccctgtctg gaagatgcat gatggtgaag tggttgtcga ctccactcct atcatgaaac
     6421 gtatcgataa aattcacaac gatggtcaat tagcctcttc ttcagatcta gcccggcgcg
     6481 atgaatggat tgaatgggca gatcttcacg tcaagaacgc cactattcct attctatacg
     6541 gtagtattgg atcagctctg agcaccacac gttcagtatc acggcatgag aagtttggac
     6601 tgataactgg gcgattgtac gcgtgggcag ggtttccaat catgtggggt ataatcgcac
     6661 ggaaacgaac gaaaaacacc ggtatgaatc ctaaacaact ctggcatcac cttctagatc
     6721 aatggaccgg cgagattggt gagcagcaat ttttcggtgg cgacgagccc gatcttgttg
     6781 acctcattgt ctatggttac atgcgatcaa ttgagatgca tccgaaagca ttccgccaca
     6841 ttgaagaaca tgaaaatggg atggtttggt tcaaacgcat gaaaggtgtt gctgcttaat
     6901 tatccatcac tgatattgag accgtaggtg gaaatcatcg caagcatacc aaggcaacaa
     6961 gctgagtaga agtggccttg gctaaagaag acgagtcccc cggcagtccg gagaagcaaa
     7021 gcactcttgg ctttccaacc catgatgccg agaacaatcg caatcaatcc aataccaaag
     7081 aaaattgtac ctacgatatc gtacactgct gctgcagtag gatcatacaa ttcacgacca
     7141 cgctgctctt cagataagtc aatccagcgc atcaatccat tattttcctc ttcaacagca
     7201 tcgaatactg taggagattc gtaatcaacg tccaagtgtg taaatccata cggttcaaac
     7261 aaagcaccag gtgacagaat aatccgatgc gtcatacctt ctgaatcgtg ggtgttattc
     7321 accacaaaca tcgtcatgag acctggattc aaaccctcaa gacggaagcg gccttccgcg
     7381 tcagtcacat ttgatgggcg agtgattctc tgagttccat tctctacgac tgtcgttaca
     7441 acctcgattg taaagttaga tcctgggcta ccatcatgca gggtcaaggt acctgtgagg
     7501 attgctgatc caggtaagga ttgactgatg atggaggcag tctgtgtttg actgtaaatg
     7561 aagccccgat cggtcacaag accacggtct ccctcaataa aatcaaggcc gttgataaca
     7621 ccgaatattc ccgcgacgag gatgaacagg agggccgcgt gcatccgagg gtctcttgga
     7681 gcgtccttcg gtaactgaag tgttgctcct gtagaggaaa atactggttc ctcctcagga
     7741 atcatgacaa ttggaggatc cgaggagtcc tcttttctgt cccccatgag tatggataga
     7801 aggtgtcctt tattccgctt gcgagggctg atctacttct ctgtgaatcc tatcgcccaa
     7861 cgaacggttg aggcgcaccc aatcggctgg atctatccat gcaactagat gcaggccttc
     7921 gtcactcatc ctccgttctc caaccatcga attgcgacgg atttcggact cgatagctgc
     7981 gattggacga tcggatgcgc tattgggtgg cgaaaccaaa aacgaaattg gagggccatg
     8041 taaacgtgtc aagatgttag aacgaaggtg ttcgatacct tcagacgaag ttgaagatgt
     8101 tagaattgtc tcagaaaccc cgaaagaatc caacgcatga ttcactgcaa caacgtgaga
     8161 ttcactgcac gaatcctgct tggtcaaaac cacaagcaaa tcgtacgaac ccgcatctgg
     8221 atcactacga tcgaagagtt ctcggcgtga agtctcaaac ttccggacca cttcctccac
     8281 tggatccgag caatccaaca aaaggagcag gaggtcacat tcaaggctct ctttgagagt
     8341 tgcagaaaat gcatcaagga gatctgaagg gatatcgtcg atgaacccaa ttgtgtcaac
     8401 gagcagtaca cgagggctga actgcatccg gccaactgtt gtctccaacg tcgagaaata
     8461 acgatcttcg acaatgactg gtttaccaca gagggaggcg aataaactcg atttcccagc
     8521 gttggtatat ccagctaaac ccaccgttcg ggccccgctt gctcgacgct gtctttggcg
     8581 ctccttgatt gcccgactat atcttcgctg acgtccacga agtgtcttca gttctctatt
     8641 tagggcattc aatgcaacat tccaaccagt tcgaccgccg gccccgtaac cgaggcgttc
     8701 tccggttgtc tctcgattca ccaattcacg caaaacgtta cgatcagcgt tcaaacgggc
     8761 aatacgcact tgattgcgtg cttcaaccga tgaggcatgt tgagtaaaga gttctagaag
     8821 aaggcgaact cgatcccaag tctcacattg taacatgtca gtcatattca ctaattgacg
     8881 agcacttaga ttcgcattca cgaggacgag atctattcca aaccaaggat gactttcagg
     8941 agccatacgc aattcatcac gaattgcttc aagtcggccg cggcctagat gtgttcgttt
     9001 gtccgatcga cctcgctgag caacgatttc aacaacttgg acatccattg tatccgcaag
     9061 tgcaaggaac tccgtcggat tttcattgcg agtcagcatc aatgctcggc gacccgcatg
     9121 agaggtccgc aattcttcgg tcagaactcc ccctgaacct gctatcaaag ggactgggtc
     9181 ccaatctgga tctttcatgc tcgaatccac cccgcggttt cgaggatacg ttcatctaat
     9241 tttgaaatag gaactgaagc cggatctaac ccaccatcgt ttcgttccgc gacccatacc
     9301 tcaaggttcc agtctctgtg actgaaagca tgtctgaccc tacctacaga tctgtgtttt
     9361 tcgacatggt gattatcgca tagcacatct attcccttag gatcctcggt tattggtaca
     9421 ccccacaacc cacccagcct cgagcctttt cttttggtca gatgaattcc aaatggtgtt
     9481 cgaattacga gagcgtgtcc atcaattctc tttgaattcc gtttacgtga tgcaggaaat
     9541 ttagttggct catccgtttt tactgcaaga catacatctt cagcaggaca tctgccgcat
     9601 aaggggcgac ggggcgtaca aacagttgca ccaagttcca ttaaagcctg attccaatct
     9661 cctggtcgat ttcgataaag ggattcgtca gcccatgttt gagtgtcgcg atctttgggt
     9721 cgttcctctg ctgatatacg agcatagata cggcgaatat taccatccac agctgcaaca
     9781 gggtaaccga atgcaatgga agatacggct gctgatgtgt atgggccgat tccaggcaaa
     9841 ttctgtaaat ctcgaggatt agaaggtaga gaaggagggt ttcgagagat gatttcaaca
     9901 gagagagcat gcagattacg tgcccttgca taatacccgc aaccctgcca agcctctagg
     9961 acatcctcga cgggggcagc agccatggat tctattgtcg gaaagcgttc catcattcga
    10021 taccaatgtg caagaccgac tttcatctgt gtctgttgta gcacaaattc ggagacaagg
    10081 actgcccatg gatctggatc gctccgccat ggaagatcgc gtgcctcgac atcgtaccac
    10141 tccagaatgc gcccctgaac ggattcggac agcccgctca tcgtttgtct ccttagccgg
    10201 agcatccata gcgattgcct ccgaagtaga actgatgaca gcacatgaag cggttctcgt
    10261 gctaaggggc gaatcaatcg agcgcctctc aactctgaag gcctcgatat ctgtagatga
    10321 ccctgaaagt ttctctatca aaatggacca cgaagccgta gaaatgcaca ttatcgtcca
    10381 gagtaacaac atgcgaacac tacggaacac catggatgac attctcgcat gcatcgctgc
    10441 agttgaaacc acccttgaac aaattgaatg agtgaaatcc acaatccttc aagtgcaatg
    10501 ggcgagtccg cggctcagtg acggaattcg gagactccga aacccccgac gtcggggagg
    10561 aggtgctcgc cacaacggct caccgagttc gactcccgca tgaccgggct tccgatcttt
    10621 ggatagacga ctcacccagc cccattctga ccgaaagtat ggagcgatgg acgaggactt
    10681 tgttagaaga cgatgggtac cgcccaatcg gccagacaag agtcctggtg cgagcacggg
    10741 tcatcgcgaa acaagaaggt gtgctgtgcg gaagtcatgt cgtcaaccat ctactaagga
    10801 cacgacttcc tgaagtgcaa atgtcttggc ataaacgaga aggtgagcga tttcaaattg
    10861 atgatactct cctgatactc gatggtgccg ccttggagat tcttgccgtc gaacgtgtcc
    10921 taatcaacct catcggacgg atgtcgggca tagcaacaga gaccgaacgt tgggtaaatc
    10981 gattgaatgg actgcgagtt gcttctactc gtaagactgc atggggaatc ttagacaaat
    11041 gggcaatcca catcggtggt ggcctgacac atcggctgcg caaaagtgat gcttggatga
    11101 tcaaagagaa tgaccagact gttctcaaga tgaatcttga agaatcaaag aaagaaacta
    11161 tgcaaaaatg gattacaaca acggatctca acaaacacgg tgccttcaca gtcatcgaag
    11221 tagattccat atcaatggca aatgtgattg caaaagcttg gtgtaatcga atgatggaaa
    11281 ctgaggagga tcgggtcctt gttatcatgc tagataacat gggaccagcc aagacaaagg
    11341 aagccgtgct cgacattcag tcccacggtt acaatcaatg gatttgcaca gaagcaagtg
    11401 ggaatatccg tttcgaagat ctcgatgatt ggatgacaac tggagttgac gttctatcta
    11461 cgagttcgat gaatatgggc gtacgatcaa tcgacatcag catgctcatc gatgaatctg
    11521 gagtcagaac tctaccctcg gaagactgat ggtgtacttc acggtccaat gaccatgggt
    11581 gaggtacccg aatctcatcc acgtcatgcc tcccttatgt cacggcagcg acttgtcgat
    11641 gctatgaaag aggggctcct tgctgattct gctctcattg ctcacggccg tggggaggcc
    11701 ttcgactatc tactcggaga acaaaccatg cctggggcga ctatggctat cgatgaagtt
    11761 gcagcgaggc tccttatcgc taaccagccg gtaatctctg tgaatggcaa cactgttgct
    11821 ctcgcctgtg atgaacttct acaaatcgcc gatacactcg gatgtcccct cgaagtcaac
    11881 atctactatc ggacaccaga acgaatgacg gcacttctcg gaagaattag atctcgtgct
    11941 actgctctta atctgaatca tgttgagatt cttggtgcca atccaaatgg acagattccc
    12001 ggtcttgatg gaccgcgcgc aaattgctgc caagagggga tacttggagc agatgtagtt
    12061 ctcgtcccgc ttgaagatgg ggatcgatgc gaggcgttag tagcgatggg gaagcaagta
    12121 ttcgtgattg atttgaatcc actatcaaga actgcgaaaa cagcgacgat atgtatcgta
    12181 gatgaagtgc aacgtacatc atctgctctt ctctctcgac tcaaaaatcc aaaggattct
    12241 gaccctcact tcgatgcaga tgcttcacga cgtgccgtcc ttgaagtgat gctcggcgca
    12301 ttggagcggg attaggccga agtatagtgc gttgccaaca tagaagcaac acgtgcacag
    12361 atggcttcgg aaacctcgga tgttgacgct tctccgccga gatcataggt gagggttcct
    12421 ccttcactaa cctgattttc gatggctgat tcaacaattt cagctgcgac tgttgcatca
    12481 gtatcaccac tgcgccggcc aagccaatcg agcatcattt gcacactact caacatagca
    12541 attggattta ccacaccttt gccagcgtac tttggacttg acccatgcac tggttcgaac
    12601 atcatatggt catcaccaat gtttgcactc gcagccatac ccataccacc ttgaagtgta
    12661 cttgcaagat cggtagcgat gtcgccaaac atgtttgatg tcacaaccac atcgtaaaac
    12721 tccggttgac gaaccaacca catagtgaag gcatcgatgt acgccatatc cgtctcgatg
    12781 tctggatgat tttctgcaat ttccaaatag attgaacgga aaagttggca accacgcgta
    12841 acattactct tgtcaatgca actcactctg gatgttccat cagaaggagt ccctgagcga
    12901 cgttccgcga tatcgaatgc aaaacggatt acacgttcag agccctttcg gctgattgga
    12961 cgagggtccc aagcaaactc gccatccaca cctggaatct caatttcagg cacactagga
    13021 tacggaatac cctgagccgc atgtgaagac ctagacagaa gcgtctgata caggccttcg
    13081 gtgttttcac ggacaacgac catgtccaca aggcccggag accaaacctg tttgaaaccc
    13141 ccatggattt tgtgttgtat gcccttgtac agtttgattg gacggacatt ggcgtagagg
    13201 tctaagccag aacggaggcc gagaataacc tgcccaccag ctaggtcacc atttggcatc
    13261 gtggcgccag gccaaccaat cgctccgaga aggattgcat ctgattgatc ccggcaatat
    13321 tcgaaggagc cctctggcca ctcttctcct gtctcgagat aatgctgacc accacattga
    13381 atctctgtaa tttgaaaagt catcggagag ttcgattcaa tcgtctgaag caacttcatg
    13441 gcttcagtca tgacctctcg gccggtcccg tccccgggca gagtcgtaat ccgatgaagg
    13501 gccatgtgag gggcatccgg tccaccttga tgaatgcccc tgtcagagat ttgaatcaaa
    13561 gtcgaagggt gcaacctaac aggggaatcg ttcatagacg gagatatcaa gtcgactggg
    13621 tatggatgaa ctcggttcct cagaggattc aacctctggg aggattaatc cttcatccct
    13681 accccaagtg gtccgagatc tttgggagag tatgctcaga atcgatccta actggagttt
    13741 tgaagattgg ctcatttctc gtgcagaaga ggaatcagaa ctacttgtat caaaactcaa
    13801 tgatgaggcc cttaggctag aacatcgccg gcacagagtt gagcgtctta tcgagcgcgt
    13861 ccaacgccag attagtgagc ctaaacgtat ctctgaccct catcagaaga atcttttcga
    13921 ggcatacaac gagccagtga agattcctat taagattcag aaggctgaga taccaatcga
    13981 cgagacaatc gatgatatcg aagacgggat tgatgatcct attctccaca tttgctgtga
    14041 gcacatcctt caagaaatgg aagaggcgag cgatggtgcg gcacacgaag atgaccttat
    14101 ggaaatctgt gcagctgttg gattcgatga atctgaagtc cgtgaagcga ttgaacacct
    14161 agttgttgca aatcagatat ctcacctagg tgatgggctc tacggcttcg cagattgatg
    14221 gggcccgggg cgtccccatc gactggtcat ataccatgag gcacgaatgt aaatcatgcc
    14281 gcggactcga gcactcctaa tcggaatcgc cggggctgga cttctcattc aagagtaccc
    14341 tcgtggccat ttcgcagctg tgacatttgg aattgtgttg atgattttag ccgacgctcc
    14401 tcatcacgca agtcggcatc gacatttcag aaaaatgtcc tcgatgcaat ctaaggatat
    14461 ggagcgcctg aatagacaat tgcgatctaa tcgtcgagct tacatcgatc ttgagcattc
    14521 agcccagaca atgcaagcgg aattagagcg cagagatgct gttggtgctc ctgaagctcg
    14581 tcgcctatta gatgaacaaa gacgtgcaat gtcacttcaa tccgaggcat tgaaggaagc
    14641 aaaacggatg ctttcccaac agcatcgagt catgcaacag aatcaatcgc tccttgatcg
    14701 tattagcaca acccaagaca atggagtgga acgttgggag cagatgatgg taagtatcga
    14761 acggctcctt gatggtcaag cacgacggac agaaacggtt cacgcacgtg taatggcgga
    14821 tacccgtcgc tctaacgatg aggttacacg aaataatcga accatccagg atattctctc
    14881 tgaaatcgtg acacagatgg ctcgtattcc tcgtgaacaa accatccaac taaacgattc
    14941 tgttctaatg tcggaagcaa aggatgctat cggaattcgg cttcctgaac ttcccacaca
    15001 aaatattgac tcatgggtcc gagcacttga agaggacttg ggctgaattc agtggacatg
    15061 agcgacatcg atgagggcat cggtgagggc ttggcatcct tagaagatag ggccagaaac
    15121 gcagaatttg agttcgcaag gaccatgcgt cgcctcgtta ttggtattgt cactcagatt
    15181 gcgcttgtcg gtctaatcat catgatgttc gacattggtc cacttatcga tgcggttgga
    15241 gttccagttg ctttcctcat cggcttcctt ttcccaatgc tcctcattat cgcatgggct
    15301 ggtgcgaatc accaagtgcg aatggagcct atggttgaag atcaagaaca cgaagttgag
    15361 acggttgtcg atcagattat cgaagaagcc ccagacaacc ctctacagaa gactatgtcg
    15421 ccatcaggag gggctgtcta catgactcga ggacgagacc caaagggtgt cgctgaaggt
    15481 ggaggggctg ataccttcga ccccagaaac ccccaaattg atgggatgga tttgcgacca
    15541 gagcatgaag ggttagaagg agaactaaga aagagtcacg aagtgaaaat cgaggctgac
    15601 gaaattgttg cagaagaagt acagaaagct tgggaagagg cagagaagaa tgatccagac
    15661 ctcatagaag cgggagtgga gcgtttaggt gatctcgtcg ggactggaca tttcggtgga
    15721 cgcactcctg aaaactgatt agaaagccat gaaagtccat ttaccagagt caggtgaaga
    15781 ataccatggc cccccctcca atgaaggccg tactcgtggc aggtggactc ggttcccgca
    15841 tgcttccttt cacacggtat atgcacaaag caatgctccc gctataccat cgccctgtga
    15901 tcgattttgc tctcggattc atccgacgag cgggcatcaa ggatatcaca atcattggaa
    15961 atcgtttcat cggtcaaatt gctcaacatg ttggtgtcgg actccctgga gagaatattc
    16021 actatgtgat cgaggaaagc ccgcaaggtg tagcatatgc tctgaatctc gcacgacctc
    16081 atatcgaagg aagtcggcta atggtctact tctctgacaa tatcaccacc gcagaactca
    16141 ccggagaggt aagacattgg aaaacctcag atgaaccccc tggatgttta ctccttggac
    16201 gctcggttga agacccccgc gccttcggag tggcagtgct cgatgaagaa ggaaagctca
    16261 cagatatcgt cgaaaaaccg gaaaatcctc ctagtgacct tgcaataggg ggcatctacc
    16321 tctatgacga acgcttttgg gaactgctcg acgaatgcta tggtactgag aacgatggtt
    16381 tctcaattac cgatctaaat cggaaataca tcgagcttgg cgcggcagaa ttgaaggatt
    16441 tgggcgatga ggaatggctc gattgtggga ctactgatgc tctgttaagg gcgtctggac
    16501 ttgcaaaaga agggcggcta tcacctgaac cgtgtaatcg tcgtgaaaat gacccaacat
    16561 catgaaagtg acatgctagt acttacaaga tagagaagga ggatttgtgc atgaaagtgg
    16621 gtataattgg agcagggatt gttggaggag ctatcgaaca ctggttcggg cccgtccacg
    16681 atttattcat ccatgatccg gttagaggaa caacacttgc cgatgtaacc gatcatgtgg
    16741 atatggctta catcgcggtc ccaacaccaa tgtcagatac agacggatct tgtgatctct
    16801 cgattgtaac ttccatcctc agcgatctcc ctgatggctt cacggctgta atcaaaagca
    16861 cagttgtgcc tggtacaaca caacgtttcc atgaagagta tccacacctc aagattgctt
    16921 attcccctga attccttgtc gaaaggaggc atctggaaga ttttgggaat caggatatcc
    16981 ttgtctgtgg aacacatcat gcagatgtag ctgaacgtgt tttccaacag catcgcgaag
    17041 caggcgttat caaatcagat cagacctttc atgtcgagcc ggcagtcgca gagatggtga
    17101 agtattcgaa aaacaccttt tacgcactga aggtcatctt tgcaaaccag atgtacgaca
    17161 tttgtcaggg tcttaatgcg gattggtaca aagtaagtga aatcatcacg gcaccccaag
    17221 ctcaaccgat tggaccatct catctcgatc ctatctttgg tctgaatcga gggtttgggg
    17281 ggaagtgcct tccaaaggat agcaatgcgc tccgtgtact tgctggtaat ctcgacgtga
    17341 agtatgattg gatggaggcg attcaatcgg acaatgcccg cttacggtct attctcacgg
    17401 ggaaaccatc agatgtcacg accaacgatg attgagatac attcgacggc agattgatgg
    17461 ggagcaacac gaagccggtc gcatgcttcc ggacacgctg cacaccctcc ctcagaatga
    17521 gaggttcgct tatgccaaac tcttggccta tatcacaaag gtcgatgatg aagtcacagt
    17581 cgacgaaatg gccatgtttg aacaacgaat ggggactgcg ctcctctctc caaatcagcg
    17641 gtcagcaatc cgagactacc tcaaaaatcc accaacgcta aaagaatgca ttagtgatct
    17701 aaaggattcc acagatgggc gtgcgggtaa gctcgcacta cgtgatgcaa tcatgatgtc
    17761 cgctgctgat ggaaccgtag acgaagatga attcgacgtc ctcggtaaga ttgccacggg
    17821 tcttgggatg aaggaaagcg ttgtcgatga tctcctcgac tgggtgatgg aaggctacga
    17881 ttggatggat cggggtctta cgatcctcaa tgcttcctga ggtggacgat tgctgccgga
    17941 tgtcatcgat cggctcgatg agcacgatcg agaaggatat gttcgcatac ttatctctct
    18001 agctggtgca gatggtactc ttgtccgtga agagaccgct gcaatcgagg ctgcgatggg
    18061 acgggcacta atccctccac atcgccgaaa cgtgttccga caagagctga agagaagcat
    18121 agacctctca gatataatcg atgggatggg ggttcctgca ttgcgcttag cgctgagaga
    18181 tgctgctatc gtcggagctt gtgatggtga gttccaagaa gaagagatcg aatttctgaa
    18241 gcgtctcgcg gttcatgcag atgtggacga agataccctg gctaaggttc tcaaatgggt
    18301 agatcaaggc tggacttgga ttgaaaaatc tcggaggctc cttggaatca gaaaccaaga
    18361 tttaggaaaa tatgcagaaa atgacgatga ttaggattca gctgctaaaa taactgagag
    18421 tacaaagaaa taattccgat ttccgcgaat ccaatttcat ttcttagagg ttgcataact
    18481 ctccaataag gcagattctt catagggtag aacttcacat cgcgacacct agcacgagca
    18541 attcggggtg agcggtagta tgggagttca cccgaagatt ggaatcacag gtcttccgcg
    18601 tagtggaaag tctgctgtga tgcagaaagt aatcgaaatg ctcgtcaacg aaaggacggg
    18661 tgaaatccgt gcacgtggtg agaacccgga tacaattcga attattgctg gaatgcgaac
    18721 agaacctctc attgaagatg gtgaacgcaa gggataccgg tgtatcgata tcgttactgg
    18781 agaagaagcc gtcatggctc acaaagacat cgacacccga acacgcgtat tcggattcgg
    18841 catcgataag gagaccatga acaccgtcgc gatccctgca attcgaactg caatggaaga
    18901 ggccgaagtc atcgtaatcg acgagattgg aaagttcagt gttgagtccg atgaatttgt
    18961 cgagattgtc cgagcggcgc ttgaactcga caagccgaca gttatgacac tcgccaagaa
    19021 atcacgacat ccgcttcttc aggacatccg tagaagggac gatgcacgaa tacttgaggt
    19081 gaccccggtc aatcgagctc tgcttccata caaaattcac aagctgatgc gcgagaccta
    19141 ctaacggccg ttgacttcat gcataggata gcgagtctag ggtcatggat acgcctgctc
    19201 ggaccattga gaggttgttc actctagcca ccgtcggttc agccttcagt gctggtttcc
    19261 tattgcttga gtcatccact tgtaacgaca gtctcgacgt tgcaatcact tgtactgagt
    19321 ctgcatcagg ggacgtcggg cgtgttcttc ttgcagtcgc aactctacta gggcttcttg
    19381 taactcaagc atggttcgca cgctcatcga atcgaagttc atggatttca atgatcttcg
    19441 acgaccgtac cgaggaagaa gtgcgtcttg atgctgattc agtaaccgac gatgtcgaag
    19501 atatgggtga aggatgggca aaactcgagg aacagatgct cacaagccgt attgaagaag
    19561 aatgaatgga gcacaggagg ggattcgaac ccctgtaaaa tggatttgca gtccatcgcg
    19621 taaccgggct ttgctacctg tgcgttgacc gctcgtgagt gccgtcgtat atcaaaacca
    19681 cgagcgtttt ctacatgtca gaattcgaca ttcggccatc cagatgaact tgagaaatcc
    19741 atcggcttca tatgggcccc gagtggttct cgttctcatg acacctgctg agggcgaagg
    19801 tcaacttcag gttcaggtat tcctcgatgg tatctcagac ctcgatttga acacgaaaac
    19861 ccgtgattgg tacacaatgg acgtctctac aatgattcag gatattgaca tcgttgatca
    19921 cgagatcgat gacgagaccg ggtgctccct tctattctta cgaaacagcg tcatacattg
    19981 ctgtccagat tctcagcgta tcaagcacta tcccaagcat ctaatccact gttttgttga
    20041 gaatcgttca ggccgaaaac cgctttctga gactagtaat acctcgaaag aacctgtttt
    20101 cttcgctgaa ctattctcca tttcaccctg tgaagaacag ttgaattgga gcgtaggatc
    20161 tcatcttgaa ggcgatgttc ctcgactcca agcgagaact gcacgttggc ttagatacct
    20221 caattcctga ttcgcttgat tcatgaaccc atcacgagaa ggcccgcgca tggatgccta
    20281 catcaccggc ctcatggcgc gggcaatcct tgattcaaga ggaaacccaa ctgtcgaagt
    20341 cgaatgcttc gtaaatggag gattggcggg acgtgcagct gtgccatctg gcgcaagtac
    20401 aggaagccac gaggcagtcg aattgagaga tggaggagac cgttggatgg ggaagggtgt
    20461 tgatctagcc gtccaaaacg tcgtcgaagt aattcaggaa gccttggtgg gactacgagt
    20521 tgatgaccaa gctaccatcg accagtgtat tctcgatctt gatgattcac cgaacaaagc
    20581 aacgcttggt gccaatgcga cgcttggtgc atcactcgcg tgccttcatg caggcgcaaa
    20641 catccactct caacccctct ggcgttacgt cggcgggcta tctggaggga gcctccccgt
    20701 acctctgatg aacatactca acggaggtgc ccacgccgca agtgatgtgg atgttcagga
    20761 gttcatggtc gtcccccatg gctttgacga cttttctgaa gcacttcgcg caggagtcga
    20821 aacctaccat tctcttcggt cagtcctcaa ggagaaaggg ctcctcggtg gcatcggaga
    20881 tgaaggtggt tttgcaccaa atctcccgag caatgccgaa ggacttgggc tattgaccca
    20941 agcaatcgag cgtgcaggat actcaccagg agatgagctt ggtatcgcat tagacgtggc
    21001 agcacaggag ttcctacatg acgatggcta ccacattgat ggtgcggtcc taagcggtga
    21061 ccaactcgct gaaacctatg caacttgggc tgacgaacat cccatcgtat ctatcgagga
    21121 tccttttggc gaagacgatt ggagttcttg gtcgacgttg accgctgaaa tcggagatcg
    21181 agtccaaatt gttggtgatg acctattcgt gacaaatgtg aatcgtctgt cggatgggat
    21241 tgaccgagcg gctgctaatg cgattctaat caaacccaat caaattggga ccgttaccga
    21301 gacactggaa tgtattgaga tggcgaagag tcacggcttc gggacagtca tgagtcatcg
    21361 ttccggtgaa accagtgatg atacgattgc tgatctcgca gtaggtgcgc gaactgggca
    21421 gatcaaaacc ggggcccctg cacgctccga tcgaacctca aagtacaatc aacttctacg
    21481 aatatctgaa tcctgcacag aattcctgcc accgttctaa atcaagacaa ccaggcctta
    21541 agccgggcaa taccttcacg gatatctgcc tcatcggttg catatgaaac ccgaacaaag
    21601 ccttcaccgc cctcgattag tgaacctgga atgagttgaa cacgggcttc atcaagagca
    21661 cgatctgcaa actcaatcga cgtcattcct gaacttgtga tatcgatgaa ggcgtagaag
    21721 gccccttcag gttctacaag atccatgccc ggaattgaag cgatgccttc catcaggatg
    21781 ttacgtcgtc ggttgtactg tatacagaac tcatctacgg cttcatcttg agtcaatgca
    21841 acagacgccg ctggcatcaa gaaagtagga acatgtgaat ttgcattagc ctgacatgcg
    21901 aaggctgctt tcatcgcttc cttgggccct gtgaggacgc caagacgcca acctgtcatt
    21961 gcaaatgact tcgagaagcc tgtgacgatc attgttcgct ctgctccacc agggatactc
    22021 gctggagata tgtgaggcca gtctacccag agaaggcgag catagatctc gtcactgatt
    22081 atccaaagat catgttcaac cgcaagagcg acaattgcct gaatctcctc aggtgtgtaa
    22141 accgctccag tcggattatt gggagagttc agcaagattg ctttggtctt gtccgtgatg
    22201 gatgagcgca tcgattctat catcggatga aagagatcgt tggtctcagt gaaaacgatg
    22261 ttaattccaa gaagggcggt ttgaccctca taggttggcc aagctggagc aggtacaagc
    22321 aactcatcac cagcttccat agtgaccatc attgcataca acagagcttg cttggctccg
    22381 ggtgtaacca tcactgtctc gggtgtagtt tcaaggcccc acatacgatt cagttgttct
    22441 gaaatttggg tacacaactc catcgaaccc ggaccacgcg tgtactttgt ctggccagct
    22501 tcaagtgcct caattgcagc atcaacaact gggcggggag tgtcaaatcc gggttctcca
    22561 acagtccagc gaatgacgtc ctcagagggc ttgactagat acggcgtgaa cccgatggcg
    22621 aggtttgaga atcgctccgg tacctcgggc atgacgcgca gagtcgcgtc ctgcttatgt
    22681 ctttgatgcg agaattcgtg cctatgcctc aagcgaaacc ttgacccatc ttctcggacc
    22741 ccctgtaatt gaggagagca catgtccgac attcctgaag gtctgaagta cacaaaagaa
    22801 cacgaatggg tgagggtcga tggagacgaa atcgtcatcg gtatcactga ttttgctcag
    22861 aatgctctca cagatgttgt gtgggtcgag atggatccgg atatggaagg ctcaacagtc
    22921 gcagaaatgg aagctttctg tagtgtggaa tctgtaaaat ctgtgagtga gatttacgca
    22981 cctattgctg gaacgatctc ggcactaaat ctggatctcg aagatgcccc tgaaacaatc
    23041 aaccaatccc cttacgaaga tgggtggatt gcacgtttcc gtccaaacaa tatggtagat
    23101 gtcgaaggtc tccttgacgc agctggttac gctgctgtca tcggagagtg agttctgctg
    23161 tggtcgatac ccctccggtt tcaatctaca ttgatggatc atgtatagag aatcggaacg
    23221 tgactgctga cactgctgcc ggttggggtt ttgtcgtcgt aataggtgac cggggtgtag
    23281 gccgcgggac aggcgacctc atgcacgaat cttcaggtcc agtgattact aattcaaact
    23341 cggatgaatg gttaggggcg gaggttggat caaacaacac cggggaacta tctgcgatgg
    23401 ttcatgccct tcgatggatt ctcgttaatt gtccaaaggg tgaagtcacc atccgtgcag
    23461 attcgatgta tgcacttcgg attactgacg gatcttggtc agcgaaggca aacaagaaac
    23521 tggcttacct ctctcaagaa ctatggaaag aagtcgcaca agttgtagat ttacacaatg
    23581 ctcacgtcaa agcacattcg ggacatcgct ggaatgaacg agccgatcat cttgcttacc
    23641 gcggtcaagg agatgatgat cctattccgc ttcaattctg gcgcccaggg caacgataaa
    23701 cggtttaatt ctaggatgat ttttcatctt ccttatcttc ttcatcctta tgtttaatca
    23761 agaaaatcat cgtgtaaaga gcaatcaaaa tcaggataaa taagggcatc aggaaccaaa
    23821 ggaataggtt gcctgggggc gtatcaggcc ctgttaatcc caccttacaa gttgccaaat
    23881 cgtcactcag aggatactgt gcgctatttt ctggatcggt tccacattcc aattcaaagt
    23941 cgtcttcgta accgtcccca tccgtatctg tgattggttc tggaatcgga gtaatgttcc
    24001 cgacggaaat cgcattggga tcaatcacct caatggttag cagaatagta gctgtttgac
    24061 ctgtatcaag atctgttgct gtgactgtga agattctagc atcgatagtc tcggtcggga
    24121 taccttggat tgttcccttg tcaagaatca aaacaccatt ctggattaga cgattgaact
    24181 ctaacccatc cggtaattcg ggttctaccg tccaagtctc aaccgtttga ttgtaaacag
    24241 ttggaatcat tgcaacaaca gattcgtcga ctgtgagatt tagcgtaact tctggatata
    24301 ccacctcaag gacggcaatg cataatccat catcttctgt agcggccgca ttatgattga
    24361 aggcgtctgg atctgtacaa ccgaagacct cgtcgatatc tggaactccg tctccatctg
    24421 tatcggtgta aacgcatgaa gcatcatcct caatcgcgat tgggtcataa ttctcggcta
    24481 aagaatctgt acagcccact gaaggaagga cggtgatgtt cactgtcgaa acggatgaac
    24541 cgccagaatt cgttgctgta accgtgaatg tcatgcgctc atgtgtggta tctgggatgc
    24601 cccaaattgt accatttgta tctgagaatt gtagaccatt gtctaattca gggctcacac
    24661 tgaatccaat aacgtctcca ccactagaga ttgcctcgat actaacctct gtaacgttcg
    24721 catacaatac aaactcctct tcgacatact cgataatcgg cggttcatcc acaacctcga
    24781 ttgtaaagga tacagattgt gagccgccac tattgttcgc ccaaattgtg tatgtctgtt
    24841 cctcggatag caccgtcggt atacctgaaa ttgatccagt ctcctcattg aaagttagac
    24901 ccagaggtaa ttctggatgg aggccccatt cgacaacttc gccaccgaca attgtaatgg
    24961 tgaaaggagc cattgcctca tcgatagtaa gcgtaatctc agtggtggtg attgaaggtg
    25021 ttgcaggcac atcgacgatt gttatggtga gtgtttttgt cactgaacca cctgtgttgt
    25081 ttgccctgat tgtataggac tctgtggatt gtggagtcgt cggagtaccg ctaatctcac
    25141 ctgtaactga atccatactc agtccatctg gtaatgcagg ctcaatctcc caagacacta
    25201 cttcgccacc atcgcttgat ggaagtagag gagacatcgc ttgaccaaca gtcaatgaaa
    25261 gcgaagtgga tgagaaggta acatcaggat gctctgcaat aactgtgaga tcgaaagtga
    25321 actcaaccga accgcccgaa ttattggccc aaactgtgta cgtttgcacc ggccagagtt
    25381 cggttggtgt tccggatatg ataccggtgt tcgaatcaag gttcacgccc gagggtagag
    25441 ttccattgac ataccaacta gtaatctcac ctggtccggt gatagatggg gtttcaggaa
    25501 tcattactgt gttatttgtg agaataattg acccgccatc aaagacaata ttggttggaa
    25561 gttggtctat tactgccagt gtcaaactga acgttctgtg acctccgcta ttattcgccc
    25621 aaattgtgta gatagtagag ggccaaagct ctacaggagt tccattcaga gatccgttag
    25681 attgactgaa gacaaggcca tttggcaatg ctccactaat tttccaggtt agaatctcgc
    25741 ccgggcctga cagaactgga tttaatggta agcgagaatc tgcagtatta ttcgtcagta
    25801 ccaatgaggc atgattgtag gtgatagtag gtagctgatc aaggactgtg atatcgattt
    25861 gtagcgaaat cggcccgcct gtattattcg cccaaattgt gtaattcgtc attggccaca
    25921 gttcagtagg ggtacccgaa atcgttccat tattgggatt aaattcgatt cctaacggta
    25981 gggttccttc aagctcccaa gttagaatct cacctggtcc tgtaagactg gcctcttcag
    26041 gaatcatcat cgtattattg gtaagaacaa tgctactgtt caggaacgtt aggcttgttg
    26101 gcacctgatc attgactgta atgttcag
//
LOCUS       DUKB01000163            3218 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_188556, whole genome shotgun sequence.
ACCESSION   DUKB01000163 DUKB01000000
VERSION     DUKB01000163.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3218)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3218)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3218
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_188556"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1884)
                     /locus_tag="HA345_05475"
     CDS             complement(<1..1884)
                     /locus_tag="HA345_05475"
                     /inference="COORDINATES: protein motif:HMM:TIGR03675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HIH84840.1"
                     /translation="MRLTLSEIKKKAKEVIPDGIPYTVELEAGTIALITPTPDAFSQK
                     GNALTVKLAKAIRRRIVVRPDPSILAKEEDVMSTVKEVIPEEAGLTNIWIDPALSEVT
                     IECHDPSTAIGAKGANLVELRDRLGWLFRAERSSAIESKTLNNIRRYRRETAAERKEL
                     FRKFGSRIYRPKRSSAPWVRLTALGSYREVGRAMHMVTTNESRVLVDCGAKPTNNRSE
                     IQPFFDAPELLPLDNIDAVIITHAHVDHIGMLPVLFKFGYRGPVYCTPPTRDLMALLQ
                     QDYIKVSRMEHGDEAPYSIADIEMCIKHVIDIEYGQKIDVAPDMKMTMENAGHILGSS
                     SVYLEIGEDKNLHRLLFSGDIKYEKSWLFDAATVRFPRVDSLVIESTYGGRSSFQPTR
                     QEATAELQDLIRRTLARGGKIFCPVFAVGRSQEVMVAIDQLFKSEDFTSDPCTVWLDG
                     MIAEATAIHASHPNFLNRDLRQQVLRGGDENPFNSPWFRTVDSRERREQIVLDPSPCI
                     VLATSGMMTGGPILHYLQHWAPNDRATLAFVGYQASNTLGRRLQEGYSEVPMAQDGHT
                     MMVDVKCDIVTIDGFSGHSDRRQLLDYVNALNPKPRRIICHHGDDTVCNEFRKTLTET
                     FKVR"
     gene            complement(1966..2583)
                     /locus_tag="HA345_05480"
     CDS             complement(1966..2583)
                     /locus_tag="HA345_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008442226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HIH84841.1"
                     /translation="MMEQTKTGTSTVGVTFDGGVVVGADHRATMGHFVANKSVQKLFR
                     IADNLALTTAGLVGHAQALSRSLAAELALFELKRGTQMSVKGAATLTANILGGRPHWV
                     QLLIAGVDEEGSHVYSIDSAGGSIPDVYCATGSGSPYMYGVLEDKFREGMNRDEAVEV
                     VARALLASAQRDAASGNGMDVCVITAKDGYQLIPQEELEALFKRL"
     gene            2731..3123
                     /gene="sepF"
                     /locus_tag="HA345_05485"
     CDS             2731..3123
                     /gene="sepF"
                     /locus_tag="HA345_05485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HIH84842.1"
                     /translation="MPGEDEPQWIPIGRASRTAEMQEGETFHWMDGRYPDPPIPASIN
                     GTIIHRAEIRDITGLPQLLDWAAEGDISIVNTRHLMSRKTEFNAVIEELAEFVERDLG
                     GEIVQIGDSRILILPKGVRATQSADERR"
BASE COUNT          848 a          840 c          783 g          747 t
ORIGIN      
        1 acgtaccttg aacgtctctg tgagtgtttt acggaactcg ttgcacacag tgtcatcccc
       61 gtgatggcag ataatccgtc gaggtttcgg gttgagggca ttgacataat cgagtagttg
      121 ccgtcgatca gaatgacctg agaaaccatc aattgtgaca atatcacact tgacatcgac
      181 catcatcgta tgtccatctt gagccatagg gacctcggaa tatccttctt gtaaacggcg
      241 gccgagagtg ttcgatgcct gatagcccac gaacgcaagt gttgcacggt cattcggtgc
      301 ccaatgttgt agataatgca atattgggcc accggtcatc ataccactcg tcgcaagtac
      361 gatgcaaggc gatggatcga gaacgatctg ctcccgacgt tcgcgcgaat ctacagtacg
      421 gaaccatgga gagttgaatg gattctcgtc gcctcctcta agcacctgct gccggagatc
      481 acgattcaag aaattcggat gcgatgcatg gattgctgta gcctctgcaa tcataccatc
      541 cagccaaacc gtacacggat cacttgtgaa atcctcggac ttgaacaatt gatcgatcgc
      601 gaccatcact tcttgagacc gccccacagc gaaaacagga cagaaaatct tgccaccacg
      661 agcaagcgtc ctacgaatga gatcctgcag ttcagcagtc gcctcctgac gtgtaggttg
      721 gaaagaagaa cgacccccat aggtggattc gatcactaag gaatcgactc gagggaaacg
      781 gactgtcgca gcatcgaaga gccaggattt ttcgtatttg atatcgccag agaataagag
      841 gcgatggaga ttcttatctt caccaatctc gagatatacc gaggaagaac caaggatatg
      901 cccggcattc tccatggtca tcttcatatc tggagcaacg tcgattttct gaccatattc
      961 gatatcaatt acatgcttga tgcacatctc gatatcggct atactgtaag gtgcttcatc
     1021 accatgctcc atccgactca ccttgatgta atcctgctga agcaatgcca tcaggtcacg
     1081 agttggaggg gtgcagtaga caggcccacg gtatccaaac ttgaagagga ccggaagcat
     1141 accgatgtgg tcaacgtgtg cgtgcgtgat gattacagcg tcaatgttgt cgagtggtag
     1201 gagttctggt gcatcaaaga agggttggat ttctgaacga ttgttagtcg gcttcgctcc
     1261 acagtcaaca agcacacgac tctcgttggt cgtaaccatg tgcatagcgc gaccaacctc
     1321 acgatatgag cctagagccg tcagacggac ccaaggtgcg ctggaacgct ttgggcgata
     1381 tatacggcta ccaaacttcc gaaacagttc cttcctctcg gctgctgtct cccgccggta
     1441 ccgacgaata ttgttgagcg tcttcgattc gatagcagag gatcgctccg cacggaacaa
     1501 ccaaccaaga cgatcccgaa gttcgacaag attggcaccc ttagcaccaa tcgctgttga
     1561 aggatcatga cattcgattg taacctcaga taatgcagga tcaatccaga tattggtaag
     1621 acccgcttct tctggtatta cctccttcac tgtactcatc acatcttcct cctttgccaa
     1681 tatggacgga tctggacgaa ccacaattcg acgacgtatc gccttagcta gtttcaccgt
     1741 caatgcattc cccttttgag aaaacgcatc tggtgtaggg gtgatgaggg caattgtccc
     1801 tgcttccaac tctactgtgt atggaattcc atcaggtatg acctccttgg ccttcttctt
     1861 aatctcgctc aatgtcagtc tcacggattc aactccttgt tatccctcag catccgcacg
     1921 taaatccgga gatgacgcgc gggcgtcagg gaattggatt ggcgatcaga gtcgcttgaa
     1981 cagagcctct agctcttcct ggggaatcaa ttggtaacca tcttttgccg tgatgacaca
     2041 gacatccata ccattgccag atgcagcatc gcgctgagca gaagcgagaa gagcacgggc
     2101 aacgacctcg acggcttcgt cgcggttcat accttcacgg aacttatcct caagcacacc
     2161 atacatgtag ggtgaaccag aaccagtcgc gcagtaaaca tcagggatag aaccacctgc
     2221 agagtcaatg gagtatacgt gagacccttc ttcatccact ccagcaatca acagctgaac
     2281 ccaatgaggt cgcccgccaa gtatgttcgc ggtaagtgtg gctgcaccct tcacagacat
     2341 ctgtgtgcca cgctttagct caaagagagc aagttcagca gcaagagagc ggctgagtgc
     2401 ttgtgcatga cctacaaggc cagcggtagt gagggcgagg ttatctgcga tacggaagag
     2461 tttctgaact gacttattgg caacgaagtg acccattgta gcacggtgat cggcgccaac
     2521 gacaacacct ccgtcgaaag tgactccaac agtgctcgtt ccagtcttgg tctgttccat
     2581 catgccgtcc ataggttcac aaccgcccct caccgattga cttgggacaa aaaggaagaa
     2641 tccgcggccc cttatgaata cgccgtcaac tctcattcaa tagcactcaa gaccctcaga
     2701 ttcatgaccg gtcgctgtga aacagtgact atgcccggcg aggatgaacc tcaatggatt
     2761 ccaatcggaa gagcatccag aacagccgaa atgcaggaag gtgagacatt tcactggatg
     2821 gatgggcgtt accctgaccc acctattccg gcctcaatca atggaacaat aatccatcgg
     2881 gctgagattc gcgatataac cgggctacct caacttctcg attgggcagc agaaggagat
     2941 atctcaattg tgaatactcg ccacctcatg agcaggaaaa ccgagttcaa tgcagtcata
     3001 gaggaacttg cagaatttgt cgagagagat ctgggcggag aaattgttca gatcggcgat
     3061 tctaggatac tcatactacc caaaggagta cgtgcaaccc aatctgctga cgaaaggcgg
     3121 tgagtacatc gacagccgaa ttgaccaccc gtgtccgatt tgtgctcaca gtggtggcct
     3181 gaagatgacg gtccacatag atgagatacc atacttcg
//
LOCUS       DUKB01000164            8805 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_125021, whole genome shotgun sequence.
ACCESSION   DUKB01000164 DUKB01000000
VERSION     DUKB01000164.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8805)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8805)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8805
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_125021"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..834)
                     /locus_tag="HA345_05490"
     CDS             complement(<1..834)
                     /locus_tag="HA345_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84843.1"
                     /translation="MGRLSAFLLVFTLVAMSAGPLLAPPSPSDSPIEAFDTSGRALVD
                     FTVSDISFGNVSSSASTFTQPNGSSVDYIYVRETIALSFEFRNAGTRLDPASAVGTME
                     VWHPIGFVVESWSVNLSLAGGQSTIESVDWTPAAAHSHLSDDGTLGGGYILRGSVDGG
                     VLDGNEANDVYDENIIVGLYHDRVEGAVCGDVDGDGAADCPNAWSFDNPVWIGAGYDV
                     GNDFSVKDEGQFQMLTSSTSAEGSRHLQIASDTGVYVSNRNDRMWWMWPDSNQDCNDG
                     FD"
     gene            992..2134
                     /locus_tag="HA345_05495"
     CDS             992..2134
                     /locus_tag="HA345_05495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84844.1"
                     /translation="MAVVRSLFARIWLTMIIGGQVLIAPAVAFAITYLVEIDTQAATL
                     SIQLELMPWILSAALAYGIISFILALVAGGFMPLTVADSGGWLAQLRLSNRYRNPEAV
                     DSARERLRTSPFGRMIRIVHEQVQTRRRGLLEVHGGLQILAAPMQVILVLVPVIAMQY
                     APDRMIAEGHLFEFGLMVYFIGLMAGFRIYPLYAARFVGAASTLRMLMEKVTKLTWTL
                     PVLILWLIVRVLIGISFNWLGIDMENWQSLAVEKRLIESLLPVEATVPESSFIDMLVA
                     LSVLPIATFTTITVLGGGAIAVPRWMQDPANRLVEIEKTNEEIETVSYDYEFDMFTPS
                     EDISEPMDSEPNTDAGLLPEVPIGGLSGWVASQVAGRLEARKKAKE"
     gene            complement(2135..2719)
                     /locus_tag="HA345_05500"
     CDS             complement(2135..2719)
                     /locus_tag="HA345_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84845.1"
                     /translation="MSLSIELSRFIIALSISWFVTRLPLFLLPRITLHDLPLVDHPAP
                     LPIDEALILQLLRVRRAYWASIPIGLVPIVLGLLMIVQSPSSFGFGLIVGAAWVLIAR
                     ITPFSLEPTGRYPYSMALIHELNRLRLEPVSCCTNPSPSWELDGVRCISCHALLLAES
                     RPDLGRRRSDNILAALLRVILLDGRPFVDAAEEE"
     gene            complement(2722..3870)
                     /locus_tag="HA345_05505"
     CDS             complement(2722..3870)
                     /locus_tag="HA345_05505"
                     /inference="COORDINATES: protein motif:HMM:NF012382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HIH84846.1"
                     /translation="MAGFSDRVNSIQPTGVRPMFDMAGDDVISFGLGEPDFQPPQVAI
                     DAMHQAMLAGHNKYTTTAGLPELRLKIAESLGYLQPGMDESNVCMTMSGTNALLNCFL
                     TLVNPGSNVLMPEPYFPLYGPDVLIAGGESRFYPCLFENEFIPQIDVLESLVDEDTVA
                     ILYNFPSNPTGATITSEQRDELLAFAKRHDLWIITDEVYDRIVYDVDHVSFLGTGYDQ
                     TLLINSFSKTFAMTGWRIGYICCPNPDTVRQIIKMQYYITACSNDAMQYAVLTAFDEA
                     SNYPEEMAKEFQARRDLICDRLNAMPGVSCHVPKGAFYVFPKMEVPGLSSEELAIELL
                     HGGVLASPGSAFGESGEGHIRFAYTISRDDISAGMDKVEAVLARLRGE"
     gene            complement(3907..6120)
                     /locus_tag="HA345_05510"
     CDS             complement(3907..6120)
                     /locus_tag="HA345_05510"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:NF014133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH84847.1"
                     /translation="MSRTITPAIGMVLLLLFPLVGSLGAPSEFVPVSDSPGQYTRMEW
                     TMEIPHQEFEAGPEVPWWERTTLDNDRNNIHDSLQEREGILWIGLSYGRDVVEQDLDE
                     LRALGIDPKLRIDAVDAILLGAIDASYLNDLTMLNGVVMVEEYGLLRFHGDIQTHAVK
                     ARPSDVYPDGAWNLSVSGQGINIALTDTGVDSEHPGLLGKHVAGYDAVCFVHSDPTCI
                     FNGGRETDGSFDPDDGNQHGTACMGMAAASGIGPDGSQTDYYGSAPNASLVDVRIGTD
                     LGAGPFENYLLEQEFYESAMNGIQWIIDNKDTAWAGADEDLHGIDIISLSWGITSHEG
                     GGSDGEDMHSRILNEATLAGVTVSVAAGNDGPDNEGLSGMGSSSLSITVGATDDKNTI
                     EREDDTVAGYSSRGPRRDNGDSNPINELKPDLSAPGTNIIQAEGCVTSGGCNNLVPGQ
                     DASGNDYTGRGSGTSYATPAVTGVIALMMEANPDLDPLQIREVLKQTAERRGEATQPD
                     VDPYWNRDFGWGMVDARAAVELSFHLIDTNQTSMVDWTLKNHHLNTTVDASGMAVITG
                     HSWGIDSPVESVEFRIDGGQWSQTSYEAAPSELPSLVPFNWTLALDADSLSSGAHVVE
                     IRAADADGISLPVVLEIEGGGSVEGAAGLSAYVFSLAIVLIVVLVSSVVLFLRTGDDE
                     GTSEIMEATLVASADDGLDGLTVAELKESLRSEGLPTSGKKGDLIQRLRDMSKSR"
     gene            complement(6168..6662)
                     /locus_tag="HA345_05515"
     CDS             complement(6168..6662)
                     /locus_tag="HA345_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009641302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84848.1"
                     /translation="MTISSDEMIAYVDMDGVLVDFPYNIEDVHESILEECKEWCARTK
                     NHHSDFDGLFSTLPPVLGGAEALVRLEAGGYIVYLLSTAPWSNHSSSSDKRRWVENHL
                     PDLPIKRLILSHRKDLNRGALLIDDRPNNGAKEFGDFEGQRWIHFGSEKFPDWGSVLT
                     ELGC"
     gene            complement(6721..6832)
                     /locus_tag="HA345_05520"
     tRNA            complement(join(6721..6755,6795..6832))
                     /locus_tag="HA345_05520"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6796..6798),aa:Trp,seq:cca)
     gene            complement(7070..7143)
                     /locus_tag="HA345_05525"
     tRNA            complement(7070..7143)
                     /locus_tag="HA345_05525"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7106..7108),aa:Arg,seq:tct)
     gene            complement(7182..8045)
                     /locus_tag="HA345_05530"
     CDS             complement(7182..8045)
                     /locus_tag="HA345_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84849.1"
                     /translation="MVLLLSVVFYIRFHSRGGGLDIFLLHGTGGLDSLIRALYRIGAG
                     YLAFHTAFFWMVRNPVPGSMTPLFRDESVIKPHPSIGLERLVPFSSWTLIIFGLSMWI
                     NGLISLSILFGAIPPDILVKVGVAFFSTAFSAAALTAVIVRYVILPSMIQNGAPIDHM
                     FLPHEQVMHNWALILLAIELGLGWMAVQTPMVSLGLTYGALYLIFAELWALWGGGYYV
                     YQFIDPRPRFAPYLLLGLTLVCALSFGVGLLVSLIRAQNPLLAVFLLFLLVIGSTRFK
                     NPAALGDSTSN"
     gene            complement(8115..8729)
                     /locus_tag="HA345_05535"
     CDS             complement(8115..8729)
                     /locus_tag="HA345_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HIH84850.1"
                     /translation="MVGRTPRVPHRVISVDAAPTDQPPPDSKEWLDIIRNQVDGNEAP
                     FLNGLNRWLKVSWSDPSSDLLGVTRFEMDPNELMRRRRMQAPSGPVCIELHPILVDDP
                     ALLAHTFVHELLHAVGLTDHDNRHASLTEMIAPAPSLADSPVLMRLRSEVLDGQEIQG
                     WTCTNCGTSWKRTTVSRPKRCPRCARSTVIPHEASSDDDIEKGS"
BASE COUNT         2476 a         2263 c         2080 g         1986 t
ORIGIN      
        1 atcaaaaccg tcgttacagt cctgatttga atccggccac atccaccaca ttcgatcatt
       61 tcgattactg acatatacac ctgtatcgct agcaatttgc aggtggcggc ttccttctgc
      121 ggaggttgat gatgtaagca tctggaattg gccttcatcc ttgacactga agtcattgcc
      181 aacatcatac ccggcaccaa tccaaactgg attatcaaaa gaccatgcat tgggacaatc
      241 agcggcaccg tcaccatcaa cgtcaccgca tacagcaccc tctactctgt catgataaag
      301 tccaacgatt atgttctcat catagacatc attggcctca ttgccatcga ggacacctcc
      361 atcaacgctg ccacggagaa tgtatccacc gccaagtgtt ccatcatctg agagatgact
      421 gtgagccgcc gctggagtcc aatccacaga ttcgatagtg gattgcccac ctgcaagtga
      481 caaattcacg gaccaagatt caacaacgaa accaatcgga tgccatactt ccatggtgcc
      541 aactgcagaa gccggatcaa gacgagtacc ggcatttctg aactcaaatg aaagagcaat
      601 tgtctcacgc acgtagatgt aatctacgct agatccattt ggctgagtga atgtgctagc
      661 agaggatgat acattgccaa aactgatgtc gctcacggtg aaatcaacca gagcacgacc
      721 cgaggtatcg aaggcctcaa ttggcgaatc tgagggagac ggtggcgcaa ggagaggtcc
      781 tgcagacatg gcaaccaaag tgaagaccaa cagaaatgca ctcaatcgac ccatcgatac
      841 caacactcaa cgcagtcgtg gcgcgataat aaggttgagg cgaaaccgag cgcctcaaca
      901 acggtggctt tcagcagaac ttgcatgaaa cacggcttga cttccttgtc atcggcaatc
      961 acttaggtcg agaggttacg gacgaaccta cgtggcggtc gtcagatcac tcttcgcccg
     1021 aatctggctt accatgatta tcggaggtca agtcctgatt gctcctgccg tcgcgttcgc
     1081 aatcacatat ctcgtcgaaa tcgatacaca ggcagcaaca ctttccatcc agttggaact
     1141 gatgccttgg atactatccg cagcgcttgc atacggaatc atatcgttca ttcttgcact
     1201 tgtcgcaggt ggattcatgc cacttaccgt tgcagactcc ggaggttggc ttgcacaact
     1261 aaggttgagt aatcgatacc gtaaccctga ggccgtagat tcggcaaggg agcgcctccg
     1321 aacgagtccg ttcggccgta tgattcgaat tgttcacgaa caggtccaga cgcgccgccg
     1381 tggactactg gaagtacatg gcggactcca gattctcgca gcacctatgc aagtcatcct
     1441 cgttcttgtc ccagtgattg caatgcagta cgcccctgac agaatgattg ccgaggggca
     1501 tttgtttgaa ttcggactaa tggtctactt cattggtctc atggccggat tccgaatata
     1561 tccactgtat gcagcacgat ttgttggagc tgcatcaacg ctccgtatgt tgatggagaa
     1621 agtgacaaag ctgacctgga cgcttccggt cctcatactc tggctaattg ttcgcgtctt
     1681 gattggaatc tccttcaatt ggcttggaat tgacatggaa aactggcagt cgctcgctgt
     1741 tgagaaacgt ttgattgaat ctctcctccc cgtagaagcc acagttccgg aatcatcctt
     1801 catcgacatg ctcgttgcct tatccgtact acccattgct acattcacta ccatcacagt
     1861 gctaggagga ggtgcaattg cggtacctcg atggatgcaa gatcctgcga ataggctagt
     1921 cgaaattgaa aaaacgaacg aagagataga gaccgtttcc tacgactatg agtttgacat
     1981 gttcacaccg tcagaagata tctcagagcc aatggattct gaaccaaata cggatgctgg
     2041 actccttcct gaagttccaa taggtggatt atctggatgg gttgcctcac aagttgcggg
     2101 aaggttggaa gcacgaaaga aggcaaagga gtaactattc ttcttcagcg gcatcgacga
     2161 atggtcgccc atcaagaaga ataacgcgca gcaaagcagc cagaatgttg tccgaacgtc
     2221 gacgaccgag gtcaggccga gattcggcaa gaaggagggc atgacaggat atgcatctga
     2281 caccatcaag ttcccatgac ggcgagggat tagtacaaca cgaaactggc tcaagtcgga
     2341 gtcggttcaa ctcatggata agtgccatcg agtaagggta gcgccccgtg ggttcgagcg
     2401 aaaacggcgt gatacgtgcg ataaggaccc aagcagctcc gacaatcaaa ccaaaaccaa
     2461 acgatgacgg cgattggaca atcatcagca atcctagaac gatgggcact aaaccaatcg
     2521 gaatggatgc ccagtatgct cgacgaactc gtaacaactg aagaatcaac gcctcatcaa
     2581 taggaagagg tgcaggatga tccacaagcg gcaggtcgtg tagggttatt cgagggagaa
     2641 gaaaaagagg gagccgtgtt acgaaccaag agattgaaag ggcgattatg aagcgagata
     2701 actcgatgct gagcgacatc ctcactcccc tcgaagacgg gcaagtacag cctcgacctt
     2761 gtccatgccc gcggagatat cgtcacgcga gatagtatat gcaaagcgaa tatggccctc
     2821 tccactttct ccaaaagcag aaccaggcga ggctaagacc cccccatgta ggagttcaat
     2881 tgcaagttct tcggaagaca aaccaggcac ctccatctta gggaacacgt agaatgcacc
     2941 cttgggcaca tggcaagata cacctggcat cgcattaaga cgatcacaaa tcagatcacg
     3001 acgagcttgg aactccttag ccatctcttc aggataatta gatgcttcat caaaggcagt
     3061 tagaacagca tactgcatag catcattact acatgccgtg atgtagtact gcatcttgat
     3121 gatttgacga acagtatccg gatttggaca gcagatatat ccgattctcc accctgtcat
     3181 cgcgaatgtc ttagaaaagg aattaatcag cagtgtctgg tcatatccag taccaagaaa
     3241 cgatacatga tccacatcat agacaattcg atcgtagacc tcgtctgtga taatccagag
     3301 atcatgacgt tttgcaaacg cgagtaattc atcacgttgc tctgatgtaa tcgtcgcccc
     3361 tgtagggtta ctcgggaagt tgtagagaat tgctactgta tcttcatcaa ctagagattc
     3421 aagtacatcg atttgaggaa tgaattcatt ttcaaagaga cagggataga atcgtgactc
     3481 tccaccagca atcagaacgt ctggaccata gagggggaaa tatggctcag gcataagcac
     3541 gtttgaaccc ggattgacca gagttaggaa gcagttgagc aaggcatttg ttccactcat
     3601 cgtcatacaa acattggact catccattcc aggctgaaga tagcctaatg attcagcaat
     3661 cttgaggcga agttcgggta gacctgcggt tgtagtgtat ttgttgtggc cagcaagcat
     3721 agcttggtgc attgcatcaa tagcaacttg cggaggttgg aaatctggct cccctagacc
     3781 aaaggaaatg acatcgtcgc cagccatatc gaacatcggg cgaacacccg ttggctgaat
     3841 ggaattcacc ctgtctgaaa atcccgccat aaccgacgca cacgggaccc ggttatgaag
     3901 ccccggctaa cgagacttcg acatatctct tagccgttga ataagatcgc ccttcttccc
     3961 tgatgtcggt aacccctcgg agcggaggct ttccttcagt tcagcgacgg tcaggccatc
     4021 caacccatca tcagcagagg caactaatgt tgcttccata atctcagaag tcccctcatc
     4081 atcaccagta cgaaggaaaa gaaccacgct agacacgaga accacaatca gaacaatggc
     4141 caaagaaaat acgtaagccg aaagacccgc agcaccttca acagaacctc cgccttcaat
     4201 ctcaagcact actggaagtg agatgccatc cgcatcagcg gcacgaatct caacaacatg
     4261 ggccccagag gaaagtgaat ctgcatcaag tgcgagagtc cagttgaatg gaacaagaga
     4321 tgggagttcc gatggtgccg cttcgtaaga cgtctgagac cactggcctc catcgatacg
     4381 gaattcaaca ctctcaacag gagagtcaat gccccaagaa tggccggtga tgaccgccat
     4441 gccggaagca tctaccgtgg tgtttagatg gtgattctta agagtccagt ccaccatcga
     4501 ggtttgattg gtatcaatca gatggaatga aagctctaca gcggcacgtg catccaccat
     4561 accccatcca aaatcccgat tccagtatgg atccacatca ggttgtgtag cctcaccacg
     4621 ccgctctgca gtctgcttga gaacctcacg aatttgtagt ggatcaagat cagggttcgc
     4681 ttccatcatc aaggcaatga ctccagtaac tgccggagta gcatacgatg taccacttcc
     4741 tcggccagtg tagtcattgc cagaggcatc ctgtccaggg acgagattgt tgcaaccacc
     4801 actagtaaca caaccctcag cttggatgat gttcgtacct ggcgcagaga ggtctggttt
     4861 gagttcattg attgggttgg agtcgccatt gtcacgacgt ggaccacggc tggaataacc
     4921 cgcaacagtg tcatcctcgc gttcgattgt gttcttatcg tcagtggctc caactgtaat
     4981 agagagacta ctcgacccca ttccggataa cccctcattg tctgggccat cattgcccgc
     5041 agcaacacta actgtcacgc cggccaatgt tgcctcattg aggatacgac tatgcatgtc
     5101 ttcaccgtcg ctaccgccgc cctcatgact cgtaatcccc catgagagcg aaatgatatc
     5161 gatgccatgc agatcttcat cagcacctgc ccaagccgta tccttgttgt caataatcca
     5221 ttgaatccca ttcatagcgg attcgtagaa ttcctgctcc agcagataat tctcgaaagg
     5281 acctgcccct aaatcggtac caatacgcac atcgactagc gaggcatttg gagcggaacc
     5341 gtagtaatcg gtctggctac catctggacc aataccactc gcggcagcca tacccataca
     5401 tgcagtccca tgctggttcc catcatccgg atcgaaggaa ccatccgtct ctcgaccccc
     5461 attaaagatg caagtcggat ctgaatgaac aaagcaaacc gcatcatatc ctgccacatg
     5521 cttgccaagt aaaccgggat gctcgctgtc aacaccggtg tctgttaggg cgatgttgat
     5581 cccttggcct gaaactgaga gattccatgc accatctgga tagacatctg atggacgagc
     5641 ctttactgca tgcgtttgga tgtcgccatg aaaacgaaga aggccatatt cctctaccat
     5701 cacaacccca ttgagcatag ttagatcatt cagataggat gcatcaatag cgccgaggag
     5761 aatcgcgtcg actgcatcaa tcctgagttt aggatcaatc ccaagcgcac gtaattcatc
     5821 taaatcctgt tcaacgacat cacgaccata actcaatcca atccacaaga taccttcgcg
     5881 ttcttggagc gaatcatgga tattgtttcg gtcattatcc agtgtggtac gctcccacca
     5941 aggcacctct ggaccggcct caaattcttg atgaggtatt tccatcgtcc actccatacg
     6001 agtatattgg cctggtgaat cagatactgg cacgaactcg ctaggtgcac caagactacc
     6061 cactagaggg aaaagcaaca gcagaaccat gccaattgca ggagttatgg tacgggacat
     6121 tgaagcgagc gaagtcatgg atagaaatga acccctcgac ggtggagtta acagccgagc
     6181 tcagtaagca cggagcccca atcaggaaat ttctctgaac cgaaatgaat ccaacgctgc
     6241 ccctcaaaat ctccaaactc tttcgcgcca ttatttggcc gatcatcgat taggagagcg
     6301 cctcgattga ggtcctttcg gtgactaaga atcaatcgct ttatcggaag atcaggaaga
     6361 tgattttcta cccatcgacg cttgtctgat gacgaagaat ggttactcca aggggcagtt
     6421 gatagcagat atacgatgta acccccagcc tcaagtcgaa caagtgcttc cgccccccct
     6481 aatacaggtg gcagagtcga gaacagaccg tcaaaatctg aatgatggtt ttttgttcgt
     6541 gcacaccatt ccttacattc ctccaatatg gactcatgaa catcttcgat attgtatgga
     6601 aaatcgacaa gcactccgtc catgtcaacg taagctatca tctcatctga tgaaatcgtc
     6661 atagtgtaaa tcaacagaac tcggtgtttg atgtctgtgg cgaactaatg gtgaatgagg
     6721 tgggggcact gggatttgaa cccagatcag cgggtgtctt ccgcttcatt tgcaattaca
     6781 aattgcatgg gcatttggag cccgcggtac tgccaggtta tactataccc ccgaaggtaa
     6841 gttcggcgaa gaaagaaccg cttatgattc cgacggtcta ctgccgtgcc tgacgtcgag
     6901 cccgcttacg gcgacggagc ttcttcttac gccacttcca gcgctgattg ccgcgcttct
     6961 tccaagctcg tgaaccgcgc ttcatgcgct ttcccgacct gccccctgta tatcagcgct
     7021 acggaagaga aagacggata caaattgcca atcatacgga ttttaggagt gggcgataca
     7081 ggattcgaac ccgtgtcagc ggcttagaag gccaccatga tatccagact acaccaatcg
     7141 cccaattcaa tccgaggtgc ggacacattt caattgtgca ctcaattcga tgttgagtca
     7201 cccaatgcag cgggattctt gaagcgcgtc gaaccaatta caagaagaaa caacaaaaat
     7261 actgccaata agggattctg tgcacgaatc aaactgacca aaagccccac accgaacgac
     7321 agagcacaaa caagagtaag ccctagaagg agataaggtg caaaccgtgg ccgtggatca
     7381 atgaattggt agacgtagta cccaccaccc cagagtgccc ataactcagc gaaaataagg
     7441 tagagggcgc cataagtgag gccgaggcta accataggcg tctgcactgc catccaccca
     7501 agccctaatt cgatggcgag gagaatcaat gcccaattat gcataacctg ttcatgcggt
     7561 aagaacatat gatcgatagg cgctccgttt tggatcatag atggaagaat cacataacga
     7621 actatcactg cagtgagagc ggctgcactg aatgctgtag agaaaaatgc gacaccgact
     7681 ttgacaagaa tatctggagg aatcgctcca aacagaatag agagggaaat tagaccatta
     7741 atccacatag ataagccgaa aatgatcagg gtccaagagc tgaatgggac gagccgctcc
     7801 aaaccaatag aggggtgagg tttgatcacc gactcatctc tgaaaagagg tgtcatcgaa
     7861 ccaggtactg gatttctaac catccagaaa aatgctgtat gaaaagcaag atatcctgcc
     7921 ccaatccggt acaatgctcg aatgaggcta tccaacccac cggtaccatg taaaaggaag
     7981 atgtcgagac cacctccacg gctatggaaa cggatgtaaa ataccacaga aagaagcagg
     8041 accaacaata ttagagatct agagatccat gtacggtcat aaccttcgag atcaactaat
     8101 cgagtaataa ggcatcaact ccccttctca atatcgtcat ctgatgaagc ctcgtgaggt
     8161 attacagtag accttgcaca tcgagggcac cgcttaggac gagatacagt cgtgcgcttc
     8221 catgaagtac cacaattggt gcatgtccag ccttgtatct cctggccatc taatacctca
     8281 gaacgtaagc gcattagaac tggagaatcc gccagagagg gagcaggtgc aatcatttca
     8341 gtcagagagg cgtgccgatt atcgtgatca gttaatccta ctgcatgaag caattcgtga
     8401 acgaaggtgt gcgctagcaa agccggatca tctacgagaa tagggtgtag ttcgatgcat
     8461 actggtccgc ttggagcctg catacgtctc ctccgcatca gttcatttgg gtccatttca
     8521 aatcgcgtaa ctccgagtaa atccgaagat ggatcagacc aagaaacctt gagccaacga
     8581 ttcaatccat tgaggaatgg tgcctcgttt ccatctacct gattacgaat gatatccaac
     8641 cattctttag agtcaggagg aggttggtct gttggagcgg catcaactga aatcacacgg
     8701 tgaggtaccc tcggagtccg gcccaccata gcctgtggga gtgccgggca tccttaaatc
     8761 gggccgacga gtcgcttact cattgggcgt gtggcgcagc ttgga
//
LOCUS       DUKB01000165           21038 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_104047, whole genome shotgun sequence.
ACCESSION   DUKB01000165 DUKB01000000
VERSION     DUKB01000165.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 21038)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 21038)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21038
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_104047"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(231..1271)
                     /locus_tag="HA345_05540"
     CDS             complement(231..1271)
                     /locus_tag="HA345_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84851.1"
                     /translation="MRRCIALLLILLIAGSVQAESGSESTPGLRVYVGETGGMEMSGM
                     IGGIAIDVGTGNLSNSTGDIPSTQWPDIAEVYTATWCANCLDSEHAIEELNGERSIEP
                     LHYHREYSEISDPFGTEVGDDRWITRYGVTNKVATDGLERLPPSVVFNGEWLHSGSVP
                     KVADSLSGDYAMSINLGKSIPNDGLTASLSWAPDDANSTNGTASWSMDQDILERTVVD
                     IWLDDCYGPPVVSVTPVLFIVENIARYEDGSNGLEYYPHVIRDIIRVENAIDTSSGST
                     LIQMPDVWDGEDLRIVLALEWSTVFSDTQIPGCSNDTGESNDRSIPAIGALSSVLILG
                     TAALFSRSRKYV"
     gene            complement(1297..3414)
                     /locus_tag="HA345_05545"
     CDS             complement(1297..3414)
                     /locus_tag="HA345_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84852.1"
                     /translation="MMLGNDETDGTTDGLCICCGIEPAMDGMRWGRICHAMIRPRTNR
                     AMPSTNIRREDIEIVDKILDRHSPQATVSRLRELVASFPESDQSWANSPTMVRHQKPL
                     DPLMSEEDAAKLRKRVFEAIDQDDIDRCQRLLRRGFPLPGGLWLTVLEGPGTPATVVL
                     DGKIQVSRSFPGRHLVKTMSKMTASQIESIDWDRFVKVLCTLFPAIRTRIGRAFALGR
                     GYPFIGDRSRNADFCYATVLFSQIVELTGKELDPVGWDRQHREGQPAALAALPHAVEQ
                     LTQSEYEGQPWLRQWREVTEDWCDPSFLSRDNQAMIQVRNGHLHIRIRSIHGRTKIRK
                     LPMDISVWQGIISAQLSPPGSPQHDRLWLLLENWNLGRVAPAIPDEPDRTAAKTLVEK
                     VLAHNRIHILDKQQAIEIQGTSGASYRIEIKPKYISRDSLMVSGSTTGRQNQGICIHQ
                     PPEQLSLPIGDQILTIVMVCVEDLDNHPLISTITQFLERNDLLRARDSKVNDEMYVLE
                     QENQNLPHLQRRNLRALQENWRRNHREAIDEWDHEDGHIEHGRLPVFPITDDVLANLE
                     PRQRIPRLIANALVALRESPLGAQAQVPRVPGEFFTILRLTNVYETREEIDLLRTLLP
                     VCGWQQEGDDDTDDEIWRRRARLECDRGTLFTSLAPLQEIHNPQGRPWWAAIEEIVTR
                     FRNEPWTMRRLNHRLVEHDSAED"
     gene            complement(3460..4500)
                     /locus_tag="HA345_05550"
     CDS             complement(3460..4500)
                     /locus_tag="HA345_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006929877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low specificity L-threonine aldolase"
                     /protein_id="HIH84853.1"
                     /translation="MREYPSDRVDLRSDTVTQPTAGMREAMAQAVVGDDVLGDDPTVT
                     ELENRMATLLGKEAGLFVSSGTMSNAVAIRTHTQPGDEIVTESTSHIYVYEGGGYAAI
                     SGCSIALVEGEYGIMDPKHVKDAIRKADGSQSHYPDGRLVCVENTSNRGGGSCYPQTT
                     LDAIATIAAENACLSHIDGARLFNAAVATGTTPNRMAQEYDSISICISKGLGAPVGGV
                     LIGSQEFIARAHRWRKMFGGGMRQAGILAAGGLYALNHHIDRMAEDHARARTLAERLN
                     GNSGLSIDLSTVQTNMVYAETERPAIEVVELLRERGIDLFDLRPNTIRLVTHLHITDE
                     DIERTIAAFESI"
     gene            complement(4565..4966)
                     /gene="pth2"
                     /locus_tag="HA345_05555"
     CDS             complement(4565..4966)
                     /gene="pth2"
                     /locus_tag="HA345_05555"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: protein motif:HMM:NF014083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HIH84854.1"
                     /translation="MAWWNRRREQTVPIPNVEHKLVCVVDASLKMGKGKIAAQVGHLC
                     MEVALGLERNRPRLLQTWTRKGQAKVVLKALDSEEMHLLIDRAKEANLLTWSVRDAGR
                     TQIPSGSMTVIGIGPAPVEQVDDVTSYLKLL"
     gene            complement(5028..6422)
                     /locus_tag="HA345_05560"
     CDS             complement(5028..6422)
                     /locus_tag="HA345_05560"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015331.1,HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HIH84855.1"
                     /translation="MMQYKHETAVKAPRQTVWEWHNREGAFDRLTPPWEVMETLSAPP
                     DLSPGGRRVMRFPLLGPIKGRWIAEHTDLIEGEMFADRMVRGPFKRWWHTHRFVEKDD
                     LTIVEDEINYDVPMGFLGRLFGGRMAKKRIRQMFTAREKGLINDITRHMEFENTPRKR
                     VLVVGGSGLIGSNLIPFLDCMGHEVLQLVRREASHPRHRFWDPKNGVLDTAHLENIDA
                     VIHLGGVGIGDKRWTKKRKTAIIESRRKSVTLLAEKMAGMESPPEVFIVASAIGYYGD
                     RGDEGLDESSERGDGFLPETVEMWEASADAARAASIRTIHLRSGIVMSPLGGALGRML
                     LPFKLGGGGPIGNGKQWFSWISMNDHIAAIQHLMMTPECEGAFNLTSPNPVRQKQFAR
                     VLGRVLRRPAFIPLPGFVLRIVFGELARPLLLEGQKVHPHRLLESGFEFRTPNLEESL
                     RDILGAWKPNSTSL"
     gene            complement(6431..7960)
                     /locus_tag="HA345_05565"
     CDS             complement(6431..7960)
                     /locus_tag="HA345_05565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012527120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photolyase"
                     /protein_id="HIH84856.1"
                     /translation="MTLSTKHLPGRIRDLNGAPVAKNGEFVLYWMTAQRRTRWNPSLE
                     HAAQLAEELDRPLIVIEPFSIDHQYASDRLVTFVAQGMLDNRESFKGTGVRYIPWIET
                     HRKRGTGLLRRISSRACVVVIDDFPTGYPRHVMERAADIVPVCLLAVDGCGVIPLNWT
                     EKAPPLAHTFRRTVQRRVLEAISTAPMEDPLTGRSSTIWMPDVEFDRLMEDLRFEMTP
                     LEWLWRVAEGGTTAKQALEPLPIDHQVPPVLGSRGGSFEAGRLLDTFIHQRLSKYVEG
                     RNNPSNPMTSRLSPWLHFGHISSMEVVFRVLRNVSWDPSMTEEKVTGSRNGWWGLPES
                     HESFLDQIITWRDLGFHFAHHRPDHATFSSIPEWAQVTLAEHAADPRPSYTFKELEES
                     NTHDEIWNAAQQELRETGIIHNYLRMLWGKRILEWAPDPVTASDWMVRLNDRWALDGR
                     DPNSYTGIFWVLGRHDRAWGPERPVFGKVRFMSSMNTARKLDLKRYLAQFGTGCNDSV
                     A"
     gene            complement(7957..8460)
                     /locus_tag="HA345_05570"
     CDS             complement(7957..8460)
                     /locus_tag="HA345_05570"
                     /inference="COORDINATES: protein motif:HMM:NF012514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HIH84857.1"
                     /translation="MPSVGCDLGVAACTVSGNQILLVQEATGPYAGQWGMPKGFVEPG
                     ELPFDAALRELKEECGIEGDVNGLVGVRETVKHGLISVFLAYYVKPLSMDVNVDSKEI
                     DDFGWFNANQLESVDWVSPTMQSIAASALSCGAPTTSLDLSENRGIPYFVHLMPDHIE
                     LARGVSR"
     gene            8561..9178
                     /gene="ribA"
                     /locus_tag="HA345_05575"
     CDS             8561..9178
                     /gene="ribA"
                     /locus_tag="HA345_05575"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019519737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HIH84858.1"
                     /translation="MVLTKQQDESSRSVRADAHLPTEHGNFRVRAFPELSEEDHCVIY
                     TGQPGLVDAPLVRIHSECLTGDAFSSLKCDCGPQLKRSLEEIQKNGTGMVIYLRQEGR
                     GIGLSAKIQAYALQDRGYDTLDANLLLGHPADARDYTIAAQMLKKMNVSRVRLMTNNP
                     LKYQALEENGIEVIQRIEHIDGVGPFNREYLSTKAARMGHLIDLK"
     gene            9199..9693
                     /locus_tag="HA345_05580"
     CDS             9199..9693
                     /locus_tag="HA345_05580"
                     /inference="COORDINATES: protein motif:HMM:NF020123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HIH84859.1"
                     /translation="MSKDKSHSTRSLIGQRAPNFTLESSEGEMVSLSDFDGQWKVVFF
                     YSLNGSPTCKRGCLNFKEQYSLFRSVDCEIIGISQDPKNDHKEFKEENELPFPILGDP
                     NREAAKAYGVSMHLGQFPSKSSFVIAPDGTIRHVYDWLFRPRTHVAKILAALSDVTDG
                     GRFE"
     gene            9690..11087
                     /locus_tag="HA345_05585"
     CDS             9690..11087
                     /locus_tag="HA345_05585"
                     /inference="COORDINATES: protein motif:HMM:NF014080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84860.1"
                     /translation="MSWEQVLADAGLNDREIKSVLILSSNPKMKASELASELGTTRLD
                     AYNSLSRLQEIGLVTTTADRPMKFSSPPVNEAIELLIGMKKEQLRRVEIGYESVLEGR
                     TIVGKNVQENHSDEPKFAVLKERVHIHKRIEQMASEAEERIVLMLGEYGILALCRGPA
                     VEAVNDAVKRGVRVQVLAKLHRRTVRFFQQLDEAIEVRHSDDVDTQGALKDESEVLQM
                     LKIESNPVGRGREDAALYVLSEQFSTSQANLIDAIWPEAVPFEQAVKRFTEKQIVDPL
                     RIEIGQGSFLEKLRNALGVDLELPDEDTPFDPDAMIKAGREVSNARRSLSENSLASLT
                     ILGFDMQMMMRQVGRRVGEELAFTLRSIEDNIEFLNELMDLWEAAGLGTLTYEFDPNF
                     FVQVGLNELPEVDNPEVLPLWELDDGIIEGALAARYPEEGDVRVIREEGSGEIDDVWR
                     YHLLLQEKPEIESEN"
     gene            11116..11667
                     /locus_tag="HA345_05590"
     CDS             11116..11667
                     /locus_tag="HA345_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84861.1"
                     /translation="MEISRDAIRLFTTIAGGFVLLAYVYGVSRMEDATALWGGVTGML
                     QRFSIIFMFVAAIGYLIFWWTTLFQMDVAVLADLRWPWSESDGGGTGRLLLAFAIFLI
                     PSMLWLESTGFHLRTDAAWTPALVVGILLLVAIGNVMFGLLGYSAHIDGHPEGKWMIF
                     GAAAISIQCILNDLIIWSWKFPW"
     gene            11714..12949
                     /locus_tag="HA345_05595"
     CDS             11714..12949
                     /locus_tag="HA345_05595"
                     /inference="COORDINATES: protein motif:HMM:NF015094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HIH84862.1"
                     /translation="MRLLTFLRFMRQIMKKGPANLEWIQRQGLLAVKLAQIFALRSDI
                     LPVEKCRQLQSLYQHAATIPSEDVFANIKNRGPEGFMDAFDTIDQEPLAAASVGQVHR
                     GRLKTGQEVVVKIIKTQNEKQFLRDVQRMRRWLRIFLIFSPKLRKVGNPMALLNHVAD
                     YTTRELDLRNEIAGANELQDIQERLKDDFPMPLLRFPIYYPNLSNEHVLVSEFIEGQS
                     LEEGIENNTLSWQTLLDLFRIHGAFLFGIGTFHGDLHPGNCIIDQQGNFVFIDNGAIC
                     HAPKHVNNALFHFFEQLSNRKFSEAYDALLAMSEVKLNEKRLAKYYAKMDEIYTGFET
                     KPVGEQSLTRVMMHTVRAAVEKAGADFGEEAFPIIRALMYLDGLVIRTHPDVMLIESM
                     GPYLEEFRTGLGIDGGTLA"
     gene            12946..13680
                     /locus_tag="HA345_05600"
     CDS             12946..13680
                     /locus_tag="HA345_05600"
                     /inference="COORDINATES: protein motif:HMM:NF024950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HIH84863.1"
                     /translation="MKVAWILGAGGGIGGFTAKRLAATGWTIVVSGRELGPLEAISEQ
                     IGGADIQPVDARDADAMKIVSKGILERHGSIDAVVVAVGSILLRPLHGTSPDQVRETI
                     EQNFYTAFNALRATAPLMMRGDGGRVVLFSSVAATYGMSNHAAIAASKAAVEGLARAA
                     AADYAKRGIRVNAIAPALTDTPMAGRLVANEASRDISDNMHPVGRIGDADEVASIAAW
                     LVDGAPDWMTGEVVHVDGGLGRVKAQ"
     gene            13692..14999
                     /locus_tag="HA345_05605"
     CDS             13692..14999
                     /locus_tag="HA345_05605"
                     /inference="COORDINATES: protein motif:HMM:NF013739.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009532047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HIH84864.1"
                     /translation="MRQSMEGQRVAIVGAGIAGLHCASILIENGIEVLIFDQEKEVGG
                     RMKTTRKDGFLLDHGFHVLQTAYPTASRVLDYKALRCKAFQPGALVVDSRKGKQKVRR
                     MADPWRQPIRGMMSAFNGFAGMSDLLRVAQLRREVVKGSIDSQFDGNDATTMEWLHSK
                     GFSESMIQRFFLPLFSGIFLESDLRTNERMFRFVFRMMSKGKMVLPAEGIGSVPEKMA
                     EQIGNDRLRLGVRISGIDEGAVRFRGEAHRFDTVVKTFSEPTEEGLTRSVWTIHLDAE
                     KAPFRSKHILLNGNLSEPSSLITHVAVPSNVQSSYAPDGRSLVTVTIVGDRVTAAGIQ
                     EPSGIEAAARDELGRWFGDGTVSTWRTLDVNCIEHALPEIGAGMRLTNQPRQGESGVI
                     ECGDYLLHGSVEGALLTAEKAAQEIIEKLKTPTSGNQQPMRRF"
     gene            15043..17403
                     /locus_tag="HA345_05610"
     CDS             15043..17403
                     /locus_tag="HA345_05610"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012289.1,HMM:NF017874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Vps62-related protein"
                     /protein_id="HIH84865.1"
                     /translation="MGMADYGPRSPASRGMAQFDKTINPEYYENVKASNKTIRGLLGI
                     QIILAPMAIYPTGMLWEAGLSANNPGEAFFVLLAILLTSVSAIPIGLILPKLATRGIR
                     PEDLDEKWANDTYSLIFTTPLGMIWVALWIWCLPNVWTLLPLGPWQVNWWKIFPYIGI
                     VPMSMMGLIGLPALARNLKNPITKEEAKDMNGIEVIQNNPGQEIIVRIIEPHYKNDAW
                     IGLYNAGSGDNEHGDRWKWMRDVDANHISLPAQGVGAWSVRLFKDGGYTQISSIDFRI
                     GLSNQALTQRYMFVPEEMTWNGHNGRAKAMGGHLASISSAEENEEVTRISGGKPVWIG
                     GIRKGSGNGPGADYWYWSDGQPWTYTNWHPGEPNNYGGHENRVHLGLQARGTWNDVPE
                     GWSGPAVYEMSTISHTNASPTEQGNFEFIAISEYDEVWNDKGSRAQQDVSVWKARLPA
                     GCHLLGMTAKNGHSRPTFPTLVIRAGGSDIAPPERFDLVWWQERGQRRFWCWRPIPPP
                     GYASLGDVGTLSENPPSRGDVVCVAIGCLSANKQPLGEQIWNDRGGGAPKDGAFFAQP
                     GGTGLFRCSDDDTHNRPRGEFYIPGSMASKNSNETRGSGIDILSFNQGQPIRFRINNR
                     PSSNDAWVGIYPVNAGDNEHGERWRWLRDIDGSNASLPGQAKGQWSIRVFSDGGYTLH
                     DRVDFEITDDYKTEVWMQNVRIDDNRLKGLALEHPKHGTTNVTTSPIVERTRQGDVNR
                     FETYNTIYLVNNRDLQDEDVSGNSDQEKINAELLMRAFQDQLLKKE"
     gene            17453..18703
                     /gene="rmuC"
                     /locus_tag="HA345_05615"
     CDS             17453..18703
                     /gene="rmuC"
                     /locus_tag="HA345_05615"
                     /inference="COORDINATES: protein motif:HMM:NF014680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HIH84866.1"
                     /translation="MALLEIGFIVLGVVLGAAIGWLLASNRFSGEIIDLKARSEAKVS
                     MDSTIKEREEAMAAHMEVIANRVTQSNSESFLTLAEERLGKFQSEAGKDYDARKKEVE
                     TLVSPIAEHLKKLETATTEMEKNREGAYQGLKRVVEGLQQQTTNLRDTNVQLSTALRG
                     SVKARGNWGQVALKNIAEASGMLEHCDFDVEFTLKSGAGGARVDLLARIPNGGKIPVD
                     SKVPLAAYWDGLNLEDGDGRTLKMKEHAAAVKKHINDLATRDYPKMMDGVDFTVMFIP
                     AEPILSAAFEFDSTLQEYAFDKHVLIVTPVTLIALLRTVSLYWQQQSMADNAKEIHTQ
                     AREFYDRVAKFSNDLAKMGRGINTVVGAYNDAVSSYDARVVPSGKRLEQLKVTEGAQR
                     KMAELPPVSVSTQGVKHLKPPEEE"
     gene            18768..20408
                     /locus_tag="HA345_05620"
     CDS             18768..20408
                     /locus_tag="HA345_05620"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012235.1,HMM:NF024256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HIH84867.1"
                     /translation="MTRELILVDDIHKAFGAKVVFEGISLRIDEGDRIGIVGHNGSGK
                     TTLLNLISDQEVDMGDIKFSPGLRIAYLTQIRDLDESATIEEELGRRGRQFEDLENEI
                     AEIEAQMADPSFYDSDWQPVMDRYSELQSMMAKSGGMDAAGHAQNIMEKLGLGHHPLS
                     MPLSNLSGGERAKVALARQLVGLDDIDLLFLDEPTNHLDIETLEWLEEFLLEFQGALL
                     IVSHDRYFLDRVANNIVEVADAKIKGFNGNYTAFQKQKELFMQTLDDRIEKAQKEIKR
                     LTGALQSMKRANKYDKSISQKRFMLNRAQGELRWLKSIKPNQRKNLNFQLKATEKASM
                     EITDLDEACLTFDGLQRPILNDVRVGISKGQRIGIVGGNGAGKTTLLRVIIGEISLDS
                     GKLDVPPGVQIGYFHQDHRTLEFTTTPVEQIQKLKPKMEYGDIRALLGRFQFTSEQVG
                     TKLSDLSGGERARIAMLKLLLEENNVLLLDEPTNHLDIQAKEALEEALEDYDGTLVIV
                     SHDRYFLDQVCNTIWHLPGDGSLKVHPGNYSDFMRRSS"
     gene            20447..20896
                     /locus_tag="HA345_05625"
     CDS             20447..20896
                     /locus_tag="HA345_05625"
                     /inference="COORDINATES: protein motif:HMM:NF022151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2493 domain-containing protein"
                     /protein_id="HIH84868.1"
                     /translation="MAENDGAGTLQRLGGKDLNDDGRVINLVIVGSSRFYDYSVIEDA
                     IEDWVEMEAYPDLVIVGGASGVDYLAERWANNHAIPFVVFSEQWSAPRPGLEDSGRGE
                     APTSLTHQLLDAATHVLAFPSPTSKWTRKIIDMANERKISMVVHEVN"
BASE COUNT         5742 a         5015 c         5087 g         5194 t
ORIGIN      
        1 ttgatcgata actatgttga gaaatctgtc tcgcgcgata gagccagaat ggagaaaaag
       61 aatacgggaa gggccacctt cactatactc taatgggttg gtagcttgtt gaattgaatg
      121 gtcgaagatc caagcaggta aggagcctct tggaatctgt tcgattgtaa ccgacaactc
      181 cgagccacct cagcaactct ccatgttgag ggttgttaaa tccgcgccaa tcagacatat
      241 tttcttgaac gtgagaataa agccgcagtg cctagtatta acacagaaga taatgcgcca
      301 atcgccggaa tactccgatc attagattca cccgtatcat tactacaacc tggtatttgt
      361 gtatccgaaa agaccgttga ccattcaaga gctagaacaa tacgaagatc ttcgccatcc
      421 cagacatctg gcatctggat taacgtggat ccagaactag tatcaattgc attttcgaca
      481 cgaataatgt ctcgaatcac atgaggataa tactccagac cgttgctccc atcttcatat
      541 ctagcaatat tctctacaat gaaaagaaca ggtgtgacag aaaccactgg tggaccgtag
      601 caatcatcta accagatatc cacgacagtc cgctccaaaa tatcttgatc catagaccaa
      661 gaggcggttc cgttagtaga gttagcatca tctggtgccc atgaaaggga ggctgtcaaa
      721 ccatcattcg ggatactctt cccaagatta atactcatcg cataatcacc tgaaagggaa
      781 tctgccacct taggaaccga ccccgaatgg agccattctc cattgaacac tacagaggga
      841 ggtaaacgtt ccaatccatc agtagcaact ttgtttgtaa caccataacg agtaatccag
      901 cgatcatctc caacttcggt accgaaggga tctgagattt ctgaatactc acgatgatag
      961 tgaaggggct caatggaacg ttcgccatta agttcctcaa tcgcgtgctc cgaatcaaga
     1021 caatttgcac accatgttgc agtatatact tcagcaatat ctggccattg agtagatgga
     1081 atatcacctg tagaattgct gagatttccg gtcccaacat caattgcaat accaccaatc
     1141 atgccactca tctccatccc tcctgtttct cctacatata ctcgcaaacc aggagtcgat
     1201 tcagagccac tctcagcttg aaccgatcct gcaatgagaa gaatcaggag gagggcgata
     1261 catcgacgca tgcatcaata ctggaccagt cttaggtcaa tcttccgctg agtcgtgctc
     1321 taccaagcga tgattcaagc ggcgcattgt ccatggttcg ttcctgaaac gtgtgactat
     1381 ctcctcaata gcggcccacc acggtcgacc ttggggattg tgaatctcct gaagaggcgc
     1441 tagactagtg aagagagtac ctcgatcaca ttccaacctt gccctacgtc tccatatctc
     1501 atcatctgta tcgtcatccc cctcctgttg ccaaccacaa accggaagaa gagttcgaag
     1561 aagatctatc tcttcacgag tttcatacac attggtcagc ctcagaatcg tgaagaattc
     1621 ccctgggaca cgaggcactt gagcttgggc tcccaacggc gactctcgaa gagcaactag
     1681 ggcattcgca atcaaccgag gaatccgctg acgtggttca agattcgcca agacatcatc
     1741 tgttatcgga aatactggta gccgcccatg ctcaatatgc ccgtcctcat gatcccattc
     1801 atcgattgcc tctctatggt tcctacgcca attttcctga agagcgcgta gattacgacg
     1861 ttgtagatgt ggaagatttt ggttttcctg ctcaaggaca tacatctcat cattgacttt
     1921 ggaatcccga gcacgcaaca aatcattacg ttcaagaaat tgtgtaatgg tggatattag
     1981 aggatgatta tccaaatcct ctacacaaac catgacgatt gttagaatct gatcccctat
     2041 gggtaaggac agttgttccg gcggctgatg gatgcaaatc ccttgatttt gacgtccagt
     2101 ggtacttccc gagaccatga ggctgtctcg tgagatgtat ttgggtttta tctcaatccg
     2161 atatgatgca cctgaagtac cctggatttc gatagcctgt tgtttgtcaa ggatgtggat
     2221 tcgattgtgt gcaaggacct tttccaccag cgttttcgct gcagttcgat ccggttcatc
     2281 tggaatcgca ggagcgacgc gcccgaggtt ccaattttct agaagaagcc aaagacgatc
     2341 atgctgaggc gagccagggg gggacaattg cgctgaaatt attccctgcc acacagagat
     2401 atccatgggt aacttccgaa tcttagttcg gccgtgtata ctccgaatac ggatatgaag
     2461 atggccgtta cgaacctgaa tcatggcttg attatccctt gataagaaac tcggatcaca
     2521 ccaatcctca gtcacttctc tccattgccg taaccaaggc tgtccctcgt attctgattg
     2581 agtcaattgt tcaaccgcat ggggaagagc ggccaaagca gcaggttgtc cctctcggtg
     2641 ttgacgatcc catccaaccg ggtccaattc ctttccagta agctcaacaa tctgtgagaa
     2701 aaggactgtc gcataacaaa aatcagcgtt ccttgaacga tcacctatga atggatatcc
     2761 gcgacccaaa gcgaaagcac ggccaatgcg ggtcctgatt gccggaaaaa gagtgcatag
     2821 aactttgaca aaacgatccc aatcgatgct ctcaatctgg gatgctgtca tcttggacat
     2881 cgtcttcaca agatggcggc ctgggaaaga acgtgacacc tgtatcttcc catccagaac
     2941 aacagtggcg ggagtacctg ggccttccaa gacggtgagc cacaaacccc caggcaacgg
     3001 aaaaccgcgt cgaagaagcc gctgacatcg atctatatca tcttgatcaa ttgcttcaaa
     3061 gacgcgtttt cgtaacttgg cagcatcctc ctcactcatc aaaggatcta gcggcttctg
     3121 atgacgaacc atcgtgggac tattagccca actttgatca ctctccggga aagaggctac
     3181 taattccctc aatcggctaa cagtagcctg aggagagtgc ctatcgagga tcttgtcaac
     3241 aatttcgatg tcctctcgtc tgatattagt agatggcata gcccggttgg tacgtggacg
     3301 aatcatcgcg tgacaaattc gcccccatct catgccatcc attgcaggct caataccaca
     3361 acagatacag aggccgtcgg tcgttccatc tgtttcatcg ttccctagca tcaagaatcc
     3421 gtgcatcatc gacccgttat gaatgaatga agatgtaaat caaatcgatt cgaatgcagc
     3481 gatggtccgc tcgatatctt cgtcagtaat gtgaagatgt gtaacaaggc gaatggtgtt
     3541 cggccggaga tcgaatagat cgatacctcg ctctcgaagc agttcaacta cttcgatcgc
     3601 aggacgttcc gtctctgcat agaccatgtt cgtctgaact gtagaaagat cgattgaaag
     3661 tcctgaattt ccattcaatc tctctgcaag agtacgtgca cgtgcgtgat cctccgccat
     3721 acgatcaata tggtgattca gagcatataa tccgcctgct gcgaggattc cggcctgcct
     3781 catccctcct ccgaacatct tcctccaacg atgagctcgt gcaatgaatt cctgcgaacc
     3841 aatgaggaca ccaccgactg gtgccccgag gcctttagag atacaaattg agattgaatc
     3901 atactcttgt gccatacgat ttggtgtggt gccggtggcg accgccgcgt tgaacaaacg
     3961 tgcaccatca atgtgtgaaa gacaagcatt ctctgcagca atggtggcga tggcgtctag
     4021 ggttgtttga ggataacaac taccgccacc acgattcgat gtgttctcca cacacacgag
     4081 acgtccgtca gggtagtgac tctgacttcc atccgccttc ctgattgcat ctttaacatg
     4141 cttaggatcc atgattccat actcgccttc cacaagagcg attgaacaac cagaaattgc
     4201 tgcataacct ccaccttcgt agacgtagat atgactagtc gactcagtta caatctcatc
     4261 acctggctgc gtatgagtcc gaattgcaac tgcattagac attgttccac tactcacaaa
     4321 gagtcctgcc tccttaccaa gaagggtggc catacgattc tcaagttctg ttacagtcgg
     4381 atcatcccca aggacatcat cccctaccac ggcttgtgcc attgcttcgc gcatccctgc
     4441 agtcggctga gtaaccgtat cactacgaag atcaacccta tccgaaggat actcgcgcat
     4501 ggtatgatgt gaggggccct tcacttaggc ttgaccttcc gatatgattg cgaaaaatgt
     4561 ctcattagag taatttcaga taactagtca catcatctac ctgttcaaca ggagcaggcc
     4621 caatcccgat aacggtcatt gatccagaag gaatctgggt tcggcccgca tcacggactg
     4681 accaagtaag caaattagct tccttcgcgc ggtctatgag gagatgcatt tcctctgaat
     4741 ccaacgcttt caacacaacc ttagcctgtc ctttacgagt ccatgtctgg agaagacgtg
     4801 gtcgatttcg ttcaaggcca agggcaacct ccatgcatag atgacctacc tgtgcagcga
     4861 tttttccctt ccccatcttc aaagatgcat caacaacaca cacgagttta tgctctacat
     4921 taggaatggg gacggtttgt tcccgccgac gattccacca tgccataaac gaacgaaggc
     4981 gtcaccctgt ttcagaccta tgcagaatgc tccgctatcg atgcagatta caaagacgta
     5041 gaattaggct tccaagcgcc taggatatca cgtaatgact cctctagatt tggtgtacga
     5101 aattcaaagc cagattccag tagacgatga ggatgaactt tctgaccttc aagaagcagt
     5161 ggacgggcca attcgccgaa tacaattctc agtacgaagc cggggagtgg gatgaatgcc
     5221 ggtcgcctaa ggactcgacc aagaacccgg gcgaactgtt tctgccttac gggatttgga
     5281 gatgttagat tgaaagctcc ttcacattca ggggtcatca tcagatgttg aatcgccgca
     5341 atatggtcat tcattgaaat ccaagagaac cattgcttac cattaccaat ggggcctcca
     5401 ccgccgagtt tgaacggcaa taacatgcgg ccgagtgcgc ctccaagtgg agacataaca
     5461 ataccagaac ggagatggat ggtgcggatt gatgctgctc gagcagcatc agctgaagcc
     5521 tcccacatct cgactgtttc agggaggaaa ccatcgccac gttcgctcga ctcatcaaga
     5581 ccctcatctc cacgatcgcc atagtatccg atggcgcttg caacgatgaa gacctctgga
     5641 ggagattcca tgcctgccat tttctcagca agaagtgtga cggattttct gcgtgattca
     5701 ataatggccg tcttgcgttt ctttgtccat cgcttatccc cgattcctac tccccccagg
     5761 tgaatgacag catcgatatt ctcaagatgt gcggtatcta gaacaccatt ctttgggtcc
     5821 cagaacctat gacgtggatg ggatgcctct ctacgaacca actgaagcac ttcgtgaccc
     5881 atgcagtcaa gaaacgggat tagattcgac ccgattaaac cacttccacc tacaacaaga
     5941 acacgtttac gaggcgtatt ttcgaactcc atgtggcgag taatatcgtt gatgagacct
     6001 ttttctcgcg cggtgaacat ttgccgaatc cgcttctttg ccatgcggcc accaaataac
     6061 ctacccagga atcccatagg cacatcgtag ttgatctcgt cctcaacaat cgtcaaatca
     6121 tccttctcaa cgaagcggtg agtgtgccac cagcgcttga atggaccacg taccatgcga
     6181 tcagcgaaca tttcaccctc gatgaggtct gtgtgctcag caatccatcg acccttgatt
     6241 ggtccgagta gggggaagcg catcactctg cgccctcctg gacttagatc gggtggtgca
     6301 ctcaaagttt ccatgacttc ccaaggagga gtcaatcgat caaaggcacc ttcacgatta
     6361 tgccattccc aaactgtctg tcgtggagcc ttcactgccg tctcatgttt gtactgcatc
     6421 attatcacca ctaagcaacg ctgtcattac atcccgtacc aaattgtgcg aggtatcgtt
     6481 tcaaatcgag ttttcgagca gtattcatgc ttgacatgaa gcgaactttt ccaaatacag
     6541 ggcgctcggg gccccatgca cgatcatgcc gtccaaggac ccaaaatatc cctgtgtacg
     6601 aattaggatc tctgccatca agggcccatc ggtcgtttag acgaaccatc cagtcggatg
     6661 cagttactgg atcgggggcc cattcgagaa tgcgcttacc ccaaagcata cggagatagt
     6721 tgtggataat tcccgtttct ctcaactctt gttgagccgc attccaaatc tcgtcatgag
     6781 tattgctttc ttcaagttct ttgaatgtgt aagatggcct aggatctgca gcatgctcag
     6841 ccaaggtaac ttgcgcccat tcaggaatgg aactgaaggt cgcatgatct ggacggtgat
     6901 gggcaaagtg gaatccaaga tcacgccaag taatgatttg atcaaggaag gattcgtgag
     6961 attcgggtaa tccccaccat ccatttcgtg agcctgtcac tttttcttca gtcatcgaag
     7021 gatcccaaga tacgttgcgg agcacacgga ataccacttc catcgatgaa atatggccga
     7081 aatggagcca gggtgaaaga cgacttgtca tgggattaga tgggttattc cggccttcga
     7141 catacttgga aagacgctga tgaataaacg tatcaagaag ccgacccgcc tcaaaagagc
     7201 ccccccgaga ccctaggact ggaggcacct gatgatcaat agggaggggc tctaaggctt
     7261 gttttgcagt tgtgccaccc tctgcaactc tccatagcca ttcaagtggt gtcatctcaa
     7321 agcgaaggtc ctccatcaat cgatcgaatt cgacatcggg catccagatt gtactactac
     7381 ggccggtgag gggatcttcc atgggggccg ttgagatggc ttccagtaca cgacgctgaa
     7441 ctgtgcgtcg gaaggtgtga gctagtggtg gtgctttttc agtccaattg agagggatta
     7501 cgccacatcc atcgactgca agtaagcata ctgggacaat atcggctgct cgttccatta
     7561 catgccgagg gtacccggtg gggaaatcgt caatcacaac cacgcatgca cgagaagata
     7621 ttcgacgaag gagtccagtt ccacgcttgc ggtgagtttc aatccaaggg atatagcgaa
     7681 cacctgttcc tttgaaagat tcgcggttgt ctaacatgcc ttgagcgacg aaagttacca
     7741 agcgatcgct agcatattga tgatcgatac tgaatggttc gataactatc aacgggcggt
     7801 caagttcctc cgcaagctga gctgcatgct ccagtgaagg attccatcga gtacgccgct
     7861 gagccgtcat ccagtaaaga acgaattcac cattttttgc gaccggcgca ccgtttaaat
     7921 ctcggattct cccaggaagg tgcttcgtcg aaagagtcat cttgagaccc cccgggctag
     7981 ctcgatgtga tcgggcatca gatgaacaaa gtagggaatg cctcgatttt cagaaagatc
     8041 aagggaggtt gttggtgcac cacaggaaag ggccgaagcg gcaattgatt gcattgtagg
     8101 actaacccaa tcgactgact ctagttgatt tgcattgaac cacccaaagt catcaatttc
     8161 cttggagtcg acgttaacat ccattgagag gggtttaacg tagtaagcaa ggaagacgct
     8221 aattagccca tgtttgactg tttcgcgaac acctaccaag ccgttgacat cgccttcaat
     8281 cccacattct tcctttagtt cacgaagggc tgcatcgaac ggaagttctc ctggttccac
     8341 aaaacccttc ggcatacccc attgaccagc atagggccca gttgcctctt ggactaggag
     8401 aatttgatta ccactaacag tgcaagcggc tacaccaaga tcgcatccaa ctgagggcat
     8461 tcagattttt ttatctcccc ggctatatga atcggtgttc ttaggttgga ggtcaggatt
     8521 tgaacagttc ttcatatgta acgaggtgaa attcgctggc atggtcctga ccaagcaaca
     8581 agatgaatct agtcgttctg tccgcgcaga tgcgcatttg cctaccgagc acggtaactt
     8641 tagggttcga gcatttccag aattgtccga agaagatcat tgcgtaattt acaccgggca
     8701 acccgggcta gtcgatgcac cgctagttag gattcattcg gagtgtttga ccggagatgc
     8761 cttcagctca ctcaaatgtg actgtggccc tcaactaaag cgatctctgg aagaaattca
     8821 aaaaaatgga accggcatgg tgatctactt gcggcaagaa ggacgaggga ttggactatc
     8881 agcaaaaatt caagcctatg cattgcaaga cagaggatac gacactcttg atgccaacct
     8941 cttgcttggc catcctgcag atgcacgaga ttatacaatc gctgcacaaa tgctgaaaaa
     9001 aatgaatgta tcacgggtac gattgatgac taacaatcca ttgaagtatc aagcactgga
     9061 agaaaatgga atcgaagtta tccagcgcat agagcacatc gatggtgtgg ggccgttcaa
     9121 tcgtgaatat ctctcaacca aagccgctcg tatgggccat ctaattgacc ttaagtagat
     9181 gatatggagt ggccctgtat gagtaaagat aaatcgcatt caactcgctc gctaatcggg
     9241 caaagagccc cgaattttac ccttgaatca tccgaaggcg aaatggttag cttgagtgat
     9301 tttgatgggc aatggaaggt agtttttttc tactcactca acggttcacc gacatgcaaa
     9361 cgtggctgcc tgaatttcaa agaacaatac tcgctctttc ggtctgttga ttgcgaaatc
     9421 atcggtatca gtcaagaccc caagaatgac cacaaggaat tcaaagaaga aaacgaactc
     9481 cctttcccaa ttcttggcga tcctaatcga gaagctgcca aggcttacgg cgtatcgatg
     9541 caccttggcc agttcccttc gaaatcgtca ttcgtcatag ccccagatgg aactattcgc
     9601 catgtttacg actggttatt ccgtccgcgt acccacgtgg ccaaaatcct cgcagccctg
     9661 agtgacgtaa cggacggagg tcgtttcgaa tgagttggga gcaagtcctc gccgatgcgg
     9721 gcctcaacga tcgtgaaatt aaatccgttc tcatcctatc ctccaatcct aaaatgaaag
     9781 catctgaact cgcatctgag ctcggaacca ctcgactcga cgcatacaat tctctttctc
     9841 gacttcaaga gattggcttg gttacaacaa cagcggatcg cccaatgaag ttctcttccc
     9901 ccccagtgaa cgaagctatc gagcttctga ttgggatgaa gaaagagcag ttgagacgcg
     9961 tcgaaattgg ttatgaaagt gtccttgaag gccggacaat agtgggaaaa aatgtccaag
    10021 agaatcattc ggatgaacca aaattcgcag tcctcaaaga acgtgtgcat atccacaagc
    10081 gtatcgaaca aatggcatca gaagccgaag agagaatcgt tctcatgcta ggtgaatatg
    10141 gtatccttgc attatgtcga ggtcctgcgg tcgaagcggt gaatgatgct gtaaagagag
    10201 gtgttcgcgt gcaggtgctc gcaaaactcc atcgaagaac tgttcgattc ttccaacaac
    10261 tggatgaggc tattgaggtg cggcactctg atgatgttga tactcagggt gctctcaaag
    10321 acgaatctga agtgcttcag atgctcaaaa tcgaatcgaa tcctgttggc cgcggacgtg
    10381 aagatgcggc tctatacgtt ctttccgaac aattctctac atcccaagca aatctcattg
    10441 atgctatctg gccggaagca gttccatttg aacaggcagt aaagcgattc actgagaagc
    10501 aaatagtcga cccactacga atcgaaatag ggcaaggatc tttcctagaa aagctgagaa
    10561 acgctctagg tgttgacctt gaactccccg atgaagacac accattcgat ccagatgcca
    10621 tgattaaggc cggtcgtgag gtgtctaacg caagacgaag cctttcagaa aacagccttg
    10681 catcattgac tatcttagga ttcgatatgc agatgatgat gaggcaagtt ggtcgccgtg
    10741 tcggagaaga acttgccttc acactacgat ctatcgaaga taatatcgaa ttcttaaacg
    10801 aactgatgga cctatgggaa gcagctggtc taggaactct aacctacgaa ttcgacccga
    10861 atttcttcgt ccaagtcgga ctgaatgaac taccagaggt tgacaatcct gaggtgttgc
    10921 ccttatggga acttgacgat ggtatcatcg agggagcatt agcagcacga tacccagaag
    10981 agggtgacgt acgcgtcatt cgtgaggaag gatctggaga aattgatgac gtttggcgtt
    11041 atcacctact ccttcaagaa aaacctgaaa tcgaatcaga aaattgagca aacgccgtaa
    11101 gggggaatat ttgacatgga aattagccgt gatgcgattc gactcttcac tactatcgct
    11161 ggagggtttg ttctcttagc ttacgtctat ggtgtatccc ggatggaaga tgctacagca
    11221 ctatggggtg gcgttacagg catgctccag cgattcagta ttatcttcat gttcgttgca
    11281 gcgattggct atctaatctt ctggtggacg acattattcc aaatggatgt agcagtcctt
    11341 gctgacttgc gttggccttg gagtgaatct gatgggggag ggactggccg cttgttactc
    11401 gcttttgcta tatttctaat cccatcgatg ttatggcttg agagcacagg atttcatctc
    11461 agaacagatg ctgcttggac acctgcgctc gtcgttggaa tccttctgtt agtggcaatc
    11521 gggaatgtga tgttcggcct cctaggatac tctgctcata ttgacggaca tcctgaaggg
    11581 aagtggatga tttttggagc cgccgcaatc tcaattcaat gtattctaaa cgacctaatt
    11641 atctggtcct ggaagttccc gtggtgacgc gtctgaacat ctgttcatat ctccaagtac
    11701 aggatttcct ctcatgcgcc tcctaacatt tctccgcttc atgcggcaaa tcatgaagaa
    11761 ggggcctgct aatttggagt ggatccaacg acaggggctg cttgcagtga aattagctca
    11821 aatctttgct cttcgctcag acatccttcc tgtcgaaaaa tgtcgccagt tacaatctct
    11881 gtatcagcac gcggcaacta tccctagtga agacgtattt gcgaatatca agaatagagg
    11941 tcctgaaggc ttcatggatg ccttcgatac tatcgatcag gaaccgcttg cagcagcctc
    12001 cgttggtcaa gtccatcgtg gtcgcctaaa aactggtcaa gaggttgtag tgaagatcat
    12061 caaaactcag aatgaaaagc aattccttcg cgatgtgcag agaatgcgtc gttggcttcg
    12121 tatctttctc atcttttctc caaaattgcg taaagtcggc aaccccatgg cacttctgaa
    12181 tcatgttgct gattatacca ctcgtgaact cgatcttcgc aacgagattg cgggtgcaaa
    12241 cgaattgcaa gacatccaag aacggctcaa agacgacttt cctatgccat tacttcgatt
    12301 cccaatatat tatccgaatc tttcgaatga gcatgttctt gtctcggagt ttatcgaggg
    12361 acaatcactc gaggagggca ttgaaaataa tacactaagt tggcagacac ttctagatct
    12421 atttcgcatc catggcgctt tcttatttgg cattggaaca tttcacggcg acctacaccc
    12481 aggcaattgt ataatcgacc aacagggcaa tttcgtgttc attgataatg gtgcaatatg
    12541 ccatgctcca aaacatgtca acaatgcttt gttccatttc tttgagcagt tatcgaatcg
    12601 taaattcagt gaagcatatg atgcattact cgccatgtct gaagtaaaat taaatgagaa
    12661 acggctcgca aaatattatg ctaaaatgga tgagatctat accggtttcg aaaccaaacc
    12721 tgtaggggag cagagcctta ctcgagtaat gatgcatact gtccgagcag cagtcgaaaa
    12781 agccggagcc gacttcggtg aggaagcatt tcctatcatt cgggcactga tgtatctcga
    12841 cggtcttgtc atccgcactc acccggatgt tatgctaatc gaatctatgg gaccttatct
    12901 cgaagaattc aggactggac ttggtatcga tggtggaaca ctcgcatgaa agtagcttgg
    12961 attcttggcg cagggggtgg aatcggagga ttcactgcca aacgcttggc tgctactgga
    13021 tggaccattg ttgtaagtgg aagagaatta ggaccacttg aagcaatttc tgaacagatt
    13081 ggaggagcgg atattcaacc agttgatgca cgggatgcag atgcaatgaa aattgtatca
    13141 aagggaatct tggaacggca tggtagtatc gatgcggttg tagtcgctgt cggttcaatc
    13201 ctacttcgac cgcttcatgg cacatcacca gatcaggtta gggagaccat tgaacagaat
    13261 ttttacaccg cattcaatgc cttgagagcc acagctcccc taatgatgcg tggagatggt
    13321 ggtcgagttg ttctattctc ctccgtggcc gctacctatg gaatgtctaa ccatgctgca
    13381 atcgcggcat caaaggctgc agtagagggg cttgcccgag cagcagcagc cgattatgca
    13441 aagcgtggaa ttcgagtcaa tgccatcgca cctgcactca ctgatactcc tatggctggt
    13501 cgcttggtgg ccaacgaagc atccagagat attagtgaca atatgcaccc agttggtcga
    13561 atcggcgacg ctgacgaagt agcatcaatt gccgcttggc tcgtggacgg cgctccggat
    13621 tggatgactg gtgaagtagt tcatgtcgac ggtggacttg ggcgtgtcaa ggctcaatag
    13681 gtcgtccaga catgagacaa tcaatggaag ggcaacgagt tgccattgtg ggtgctggca
    13741 tcgctggcct ccattgcgct tcgattctta ttgaaaatgg aattgaggtc ctgatttttg
    13801 accaagaaaa ggaggttggt ggtcgtatga aaacgacaag gaaagatggt tttcttcttg
    13861 accatggctt ccatgtcctt cagacagctt atcctactgc gagtcgtgtt ctagattaca
    13921 aagcactccg atgtaaggcc tttcagccag gcgcattagt tgtcgattct cggaagggga
    13981 aacaaaaggt tcgacggatg gcagaccctt ggcgtcaacc cattcgcggt atgatgagtg
    14041 cattcaacgg cttcgccgga atgtctgatc tccttcgagt tgctcagctc cgtagagagg
    14101 ttgtcaaagg ctccatcgat tcccaattcg acggaaatga tgcgacaaca atggaatggc
    14161 ttcattccaa aggattcagc gaatctatga ttcaacgatt ctttctccca ctattcagtg
    14221 gaatcttcct tgaatcagat ttgcgaacga acgaacggat gtttcgcttc gttttccgaa
    14281 tgatgtcgaa aggcaagatg gtgcttcctg cagagggtat tggttcagta cccgaaaaga
    14341 tggcggaaca aattgggaac gatcgactcc ggttgggtgt tcgcataagt ggaatcgatg
    14401 aaggggctgt ccggttccga ggagaagcgc accgattcga tactgtagtc aagacattct
    14461 ctgaaccaac cgaagaagga ttgacacgct cagtatggac tatacatctc gacgctgaaa
    14521 aagcaccctt ccgatccaaa catatcctgc tcaacggtaa tctgagtgaa ccatcctcgc
    14581 tgattactca tgtcgcagtg ccctcaaatg tacaatcgag ctatgcccca gatggtcgta
    14641 gccttgtgac tgtcacaatc gttggagatc gagttactgc tgcaggtatc caagaaccgt
    14701 caggcatcga ggcagccgca cgcgatgagt taggacgctg gttcggagat gggactgtat
    14761 caacttggag aactctcgat gtcaattgta tcgaacacgc attaccagaa attggtgcgg
    14821 gaatgcgatt gaccaatcaa cctcgtcaag gtgaaagtgg agtaatcgaa tgcggagatt
    14881 atctactcca cggaagcgta gaaggggcgc ttctaacagc agaaaaagca gcacaagaaa
    14941 tcattgagaa acttaagacc cctacaagtg gtaatcaaca acctatgcgt cgattttgat
    15001 atctaaaaat gtcaatgatt ccataaacat ggcattgaat caatgggcat ggcagactat
    15061 ggcccgaggt ctccagcatc tcgtggtatg gcccagtttg acaagacaat taatccggaa
    15121 tattatgaaa atgtgaaggc cagtaacaag acaattcggg gtcttttagg aattcagata
    15181 atattggctc caatggctat ttatcctact ggtatgcttt gggaggctgg cttatctgcc
    15241 aataatccag gtgaggcatt ttttgtttta cttgcaattt tgttgacttc agtttctgct
    15301 atcccaatag gactgatact tccgaagtta gcaacccgtg gaataaggcc ggaagacctt
    15361 gatgaaaagt gggcaaatga tacctattcc ctgattttta caacaccact tggaatgatt
    15421 tgggtagcgc tctggatttg gtgcctaccc aatgtctgga cccttttgcc attgggtcct
    15481 tggcaggtta attggtggaa aatcttcccc tacattggca ttgttccaat gagtatgatg
    15541 ggtttgatag ggttaccagc cttagcaaga aacctaaaaa atccaatcac aaaagaagag
    15601 gcgaaagaca tgaacggaat cgaagtgatt caaaataatc ctggacaaga aatcattgtc
    15661 cgtataatcg aacctcatta caagaacgat gcatggatcg gactctacaa tgctggatct
    15721 ggagacaacg aacatggaga ccgttggaaa tggatgcgcg atgtagatgc caatcatatc
    15781 tctctcccag cgcaaggagt gggtgcatgg agtgtccgtc tgttcaagga tggtggctac
    15841 actcaaattt catcaatcga tttccgaatt ggattgtcaa atcaggcact cactcaaagg
    15901 tacatgtttg ttccagaaga gatgacatgg aacgggcaca acggtcgtgc taaggcgatg
    15961 ggaggacacc ttgcttcaat cagtagtgct gaggaaaacg aagaggtcac aagaatctct
    16021 ggcgggaaac ctgtatggat aggcggaatt aggaaaggta gtggcaatgg cccaggagct
    16081 gactactggt actggtctga tggccaacct tggacttaca ctaactggca tcctggcgag
    16141 ccgaacaact atggcggcca tgaaaataga gtgcatctcg gtctgcaggc ccggggaacg
    16201 tggaacgatg tccccgaagg gtggagtggc cccgcagtct acgaaatgtc tacaatatct
    16261 cataccaatg cgtcgccgac cgagcagggc aacttcgaat tcatcgcaat tagtgagtac
    16321 gatgaggtat ggaacgacaa gggatctcgc gcacaacaag acgtatcggt ctggaaagca
    16381 cgtctacctg cagggtgcca tctgcttggt atgactgcca agaatggtca ctcacgtcca
    16441 accttcccga cattggttat tcgtgcaggt ggtagtgaca ttgcaccgcc tgaacgattc
    16501 gatctcgtat ggtggcaaga acgtggtcaa cgccgcttct ggtgctggcg ccccatccca
    16561 ccaccgggtt atgcttcact tggcgatgtg gggacactaa gcgagaatcc accatcacga
    16621 ggcgatgtag tctgtgtagc tataggatgt cttagtgcaa ataaacagcc gttgggtgag
    16681 cagatttgga acgacagagg aggaggtgca ccaaaggacg gggcattctt tgcacagccc
    16741 ggtggcactg gacttttccg ctgtagtgac gatgatacgc acaataggcc acgcggtgag
    16801 ttctacattc ctggaagtat ggcgtcgaag aattcgaatg aaacaagagg tagtggtatc
    16861 gatatcctgt ctttcaatca aggtcaaccc atacgtttca gaatcaataa tcgccccagt
    16921 agtaacgacg cttgggttgg tatctatcca gtcaatgctg gtgataatga acacggagag
    16981 cgatggaggt ggctaagaga tatcgatgga agcaacgcct cgttaccagg acaagccaaa
    17041 gggcagtgga gcatacgtgt cttctcagat ggaggttaca ccttacatga ccgagtcgac
    17101 tttgaaatca cagatgacta caagactgag gtctggatgc agaatgtaag aatcgacgat
    17161 aatcgactca aaggtctggc acttgagcat ccaaaacacg gtactacaaa cgtcacaacc
    17221 agtccaatcg tagaacgaac taggcaagga gatgtgaatc gattcgaaac ctacaatacg
    17281 atttatctcg tcaataatcg ggatttacaa gatgaagatg tctcaggtaa tagtgaccag
    17341 gagaagatta acgcagaact cctaatgcga gcattccaag atcaattact gaagaaagaa
    17401 tgactctggt tcctttgatt tgttcatata cccccgcgtc gaagaatttg gcatggccct
    17461 cttagagatt ggattcatcg tgctcggtgt ggtgctaggt gctgcaattg gctggttact
    17521 ggcaagcaat cgattcagtg gtgagattat tgatctcaaa gctcggtcgg aagcgaaggt
    17581 atcgatggat tccacaatca aagaacgcga agaagcaatg gcggcccata tggaagtcat
    17641 tgctaaccgt gtaactcaat cgaactctga aagcttcctc acgctagctg aggaacggtt
    17701 aggtaaattt caatcggaag cagggaaaga ttacgatgcc cgtaagaaag aggtagagac
    17761 attggtttct ccaatcgctg aacatctgaa gaaattggaa acggcgacca cagagatgga
    17821 gaagaatcgg gaaggcgcct accaggggct caaacgagtc gttgaaggat tgcaacaaca
    17881 aaccacaaac ttacgcgaca caaatgtgca actttccact gcactacgag ggtcggtgaa
    17941 agccagaggt aattggggtc aagttgcgct gaagaatatc gctgaagcct ctggtatgtt
    18001 ggagcattgt gattttgacg ttgagttcac gctcaaatcc ggggcaggtg gagcaagggt
    18061 agatttgtta gctcgaatcc caaatggcgg caagattcca gtagattcca aggtccctct
    18121 tgctgcatat tgggacggat tgaatcttga agacggagat ggtcgcacgc tgaaaatgaa
    18181 agaacatgct gctgctgtaa agaaacacat caacgattta gcgactagag attacccgaa
    18241 aatgatggac ggtgttgatt ttactgtgat gtttattcct gcagagccga tcctttctgc
    18301 tgcttttgag tttgattcca cactacaaga gtacgctttt gacaagcatg ttttgattgt
    18361 aactccagtg acactcatcg ccttgttacg cacagtaagt ctctattggc aacagcaatc
    18421 aatggccgat aatgccaagg aaatccacac ccaagcaagg gagttttacg atcgggttgc
    18481 aaaattcagt aacgaccttg ccaagatggg gcgcggcatc aacacggtcg tcggagctta
    18541 caacgatgct gttagttcat acgatgctcg agtggtacct agtggaaaac gtctggagca
    18601 actaaaggtc acggaaggag cacagcggaa aatggccgaa ttacctccag tgtcagtatc
    18661 aacacaaggc gtgaaacatc tcaagcctcc tgaagaagag taaaccccta cactagcccg
    18721 aagggtcatg aggggaagac cacgccccgc ggactggagg cgacgcaatg actcgtgaac
    18781 taatccttgt ggacgacatc cacaaggcgt ttggagcgaa ggttgtcttc gaaggaatct
    18841 ccctacgtat cgacgaaggc gaccgtatcg gtatcgttgg acacaatggt tctgggaaaa
    18901 ctacacttct gaatcttatc tctgatcaag aagtggatat gggcgatatc aagttcagtc
    18961 caggactgag aattgcctat ctcacgcaga ttcgtgacct tgacgagagt gcaacaatcg
    19021 aggaggagtt ggggcgacgt ggtcggcaat ttgaggactt ggagaacgag attgcagaaa
    19081 tagaagcgca aatggcagac ccctcattct acgactctga ttggcaacca gtcatggatc
    19141 gttactctga actccaatca atgatggcaa aatccggcgg catggatgct gctggacatg
    19201 cgcagaatat catggagaag ttaggtcttg gccaccaccc actcagtatg ccattatcca
    19261 atctctcagg tggtgaacgt gcaaaagtcg ctctagctcg ccaactcgtc ggactcgatg
    19321 atatcgatct cctcttcctt gacgaaccta cgaatcacct cgacatcgag acattggaat
    19381 ggctcgaaga attccttcta gaattccaag gagcattgct aatcgtcagt cacgaccgtt
    19441 acttcctcga ccgtgtcgcg aacaatatcg tcgaagtagc tgatgctaaa atcaagggtt
    19501 tcaatggaaa ctacactgct ttccaaaagc agaaggaact gttcatgcaa accctcgatg
    19561 atcgaatcga aaaggcgcag aaggaaatca agcggctcac gggtgcgctc caatcgatga
    19621 agcgcgcgaa caagtacgac aagtcaatct cgcaaaagcg attcatgcta aatcgtgctc
    19681 aaggtgaact ccgctggctc aaatcgatta agccaaatca gcgtaagaac ctgaacttcc
    19741 aactcaaagc aactgagaag gcaagtatgg aaattactga ccttgacgaa gcatgtctca
    19801 ccttcgatgg acttcaacgg cccatcctga atgatgtccg cgtaggaata tcgaaggggc
    19861 agcgtattgg aattgtaggt ggtaacggtg ctgggaaaac aactctattg agagtgatta
    19921 ttggtgagat ttcgcttgac tcaggaaagc tagacgtgcc acccggtgtc cagattggtt
    19981 atttccatca agatcatcgt acacttgaat ttacaacaac cccagtagaa caaattcaga
    20041 aattaaagcc taaaatggag tatggggaca ttcgggctct actcggtcgc ttccagttca
    20101 catcagaaca agtaggaacg aagctctctg acctcagtgg tggtgaacgt gcacgtatcg
    20161 cgatgctcaa actcttgcta gaggaaaaca atgtgctgct ccttgatgag ccgacaaatc
    20221 atcttgatat tcaagcaaag gaagcactag aagaggcgct agaagattac gatggtactc
    20281 tcgttatcgt gagtcacgat cgttacttct tggaccaagt ctgcaacaca atttggcacc
    20341 tacctggaga tggttcactc aaagtacatc ctggcaacta ttcggacttc atgcgacgat
    20401 catcgtgagt ccgaggtttt atccacaact aacgtgatgc cgtggcatgg cggagaacga
    20461 cggcgcgggc acactgcagc gattgggtgg aaaagatctg aatgacgatg ggcgagtaat
    20521 caatctcgta attgtaggat cgagtcgctt ctacgactat tccgttatcg aagatgcgat
    20581 cgaagattgg gtcgagatgg aagcatatcc agatcttgtc atcgtcggtg gagcaagtgg
    20641 cgtagactat ctcgcagaac gatgggcgaa caatcacgct attccattcg tagtattctc
    20701 tgagcagtgg agtgcgcctc gaccagggct ggaagattca ggaagaggag aggctccaac
    20761 atctctaacc caccaacttc tcgacgctgc gactcatgtc cttgcatttc ctagtccgac
    20821 aagtaaatgg actcgaaaaa tcatcgatat ggcaaatgaa agaaaaatct cgatggtcgt
    20881 acatgaagta aactgaatgc cggtatacac aatatagtgg gtagattccc gaggccgtgg
    20941 aagaagacag aaaggcgaca tttcccgggc cacgcctgct cgtaggatcg attatcagca
    21001 tcgctttcct ttctttgtac tcacttcttg ttgtgctt
//
LOCUS       DUKB01000166            2781 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_406441, whole genome shotgun sequence.
ACCESSION   DUKB01000166 DUKB01000000
VERSION     DUKB01000166.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_406441"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="HA345_05630"
     CDS             <1..448
                     /locus_tag="HA345_05630"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HIH84869.1"
                     /translation="QFFNLLQDLTVMENILLIQELAGKKDTQRAEELLDLVGLGSEKG
                     RFPGEISGGQQQRVAIARSIAKKPTLLLGDELTGNLDTETSQKVMEVLVEACAKENIT
                     AVFVTHDEALIQYATRVIRIDSGRIISDEQHDKSRPTELSEPTQDM"
     gene            458..>2781
                     /locus_tag="HA345_05635"
     CDS             458..>2781
                     /locus_tag="HA345_05635"
                     /inference="COORDINATES: protein motif:HMM:NF014717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HIH84870.1"
                     /translation="MSSNLLNKRLARSLWGTKLRLVAVIGMIFVGVFAGITFGGYAAN
                     LEPMYDSLYDDSENGANLADIWVDNQSGTWTPEQVNAFCSDVRNAWPSDAAALDSCEG
                     RMILKGNLFHTNDTGNHLIPSIWHGIPENADIDRNWFPEGHSEGRTAVGAEEVVMDAH
                     VTEALGMSIGDRIEIGVGNGSFEFDIVGIAYHPLHIYIAPEGSLFPPLPGEYGIGYLS
                     DLGMARMTGNEIGSANNLMLDIEGTPSFDLPNTDEDEGDEIDGMKAIVSDSMEENSLE
                     GRIRDRGQNDAVEFMRQDLDGAKKMATPFTVMIQAIAAITIALSLQRLVQSQAREIAI
                     LRTLGVPRTSLMTGYLLAPLAIGAFGCGLGVLAGPYGMNGMLDFYEELVGLPIIERSI
                     PLELYGSVIGLTMFIVFVSGVFPAWKATRMEPLDVLGGHTDLRVGSNLLRTLTGWMPT
                     RLGLSIRSSLRKPIRLSMTFLAVGISLMLAGSIQMMTAGLTDTIVGGLEEGQTWDIQV
                     YTQPGGEDAIIEWAEERDAIHEAIIELPFGTLQDSSGVDRTFTLIALQGYAEGQSMRN
                     VEIISGDAPVQTSGTLQVMMDEGSLDMAGWAIGDTRTVDVAGTSTEIQITGSVRGEVA
                     RTMFFIQPDLSSIIGIEATAIYLQIPEGVEVDDSLANISTTIQDRQVLLEGITSLLEQ
                     QTQVLSTIMGLGILFTLAVMFNTMVMNIAERDFELATLRVLGASTAGLGSMLLFESVL
                     IGLVGGLVGVLFAFGGAIGLAASFSTWQFYFPVVL"
BASE COUNT          721 a          688 c          715 g          657 t
ORIGIN      
        1 ccaattcttc aatctccttc aggacctcac tgtgatggag aatatcctac tgattcagga
       61 gttggcagga aagaaggata cgcagcgtgc agaggaactt ctcgatctcg ttggcctagg
      121 ctcggagaag ggtcgattcc caggagaaat aagtggagga cagcaacaac gcgtagctat
      181 cgcacgtagt atagctaaga agcccacatt actactcggc gacgaattaa ctggaaatct
      241 ggatactgag acctcgcaga aagtcatgga ggtgctggtt gaggcttgtg cgaaggagaa
      301 catcacagcc gtattcgtaa ctcatgacga agcactcatt caatacgcaa cacgagtcat
      361 ccgcatcgac agtggtcgta tcatctctga tgaacagcac gacaaatcaa gacctaccga
      421 actaagtgaa cctactcaag atatgtgagg tgaacaaatg tcatctaact tgttgaacaa
      481 gcgacttgca agaagtctct ggggaaccaa actacgtctt gtcgcagtca tcgggatgat
      541 tttcgtcggt gtcttcgctg gaatcacctt tggcggctat gcagccaacc tcgaaccaat
      601 gtacgactcc ctctacgacg attcggagaa tggtgcaaat ctagctgaca tctgggtaga
      661 taatcaatca ggtacctgga cgcctgaaca ggtgaatgcg ttctgtagtg acgttagaaa
      721 cgcatggcca agcgatgctg cagcactgga ctcctgcgaa gggcgcatga ttctgaaagg
      781 caacctattc catacaaatg acacaggcaa ccatctcatc ccatctatct ggcacggaat
      841 ccccgaaaat gcagacattg accgaaactg gttccctgaa ggccactctg aggggcggac
      901 agctgtaggt gctgaagagg tagtaatgga tgctcacgta acggaagcgc tcggaatgag
      961 tatcggggat cgaatagaga ttggcgtagg taacggtagt ttcgagttcg acatcgttgg
     1021 aatagcctac catccgctcc acatctacat cgctcctgag gggtctctct tcccacctct
     1081 gccaggtgag tatggaatcg gatatctatc cgatctcgga atggcaagaa tgactggcaa
     1141 tgaaattggt tctgctaaca acctgatgct agatatcgag ggtactcctt cgtttgacct
     1201 gcctaatact gatgaggacg agggagatga aatcgatggg atgaaggcaa tcgtgtcaga
     1261 ttcaatggag gaaaatagcc tcgagggacg gattcgtgat cgaggtcaga acgacgctgt
     1321 tgaatttatg cgtcaagacc tcgatggtgc gaagaagatg gcaacaccat tcaccgtgat
     1381 gattcaagcc atagctgcaa tcacaattgc tctgagtctc cagcgccttg ttcaaagtca
     1441 agcccgggag attgccatcc tccggaccct tggagtacca cgaacttcac tcatgactgg
     1501 ctacctgcta gcacctctgg ccataggtgc attcggctgt ggcctcggag tactcgcagg
     1561 cccatacgga atgaatggga tgttagattt ctatgaggag ttagtcggac tccccatcat
     1621 tgaacgcagc atacctctgg aactgtatgg aagtgtgatt ggcttgacta tgtttatcgt
     1681 cttcgtatcc ggagttttcc ccgcttggaa agcaacaagg atggaaccac ttgatgtgct
     1741 tggtggacac actgacttgc gtgttggctc caatctactt cgcaccctta ctggttggat
     1801 gccaacccgc cttggtctat cgattcgttc aagcctgcgc aagcctatca ggctgagtat
     1861 gaccttcctt gcagtaggta tctcattgat gctcgctgga tcgattcaga tgatgacggc
     1921 cggcctaaca gacacaatcg taggggggct cgaagaaggg caaacgtggg acatccaggt
     1981 ctacacacaa ccaggcggag aggatgcaat tatcgaatgg gcagaggaac gagatgcaat
     2041 ccatgaggct attatcgaac tcccatttgg caccctacag gactcatcgg gagttgaccg
     2101 taccttcacg ttaatcgcac tacaaggata cgctgaaggt caatcgatgc ggaatgtcga
     2161 aattatttct ggagatgcgc ccgtccaaac ttcaggtaca cttcaggtca tgatggatga
     2221 agggtcactt gacatggcgg gatgggcaat cggagataca cgaacagtcg atgtggccgg
     2281 aacaagcaca gagatccaga ttacaggctc cgtgcgtggc gaggttgcgc ggactatgtt
     2341 cttcatccaa cctgacctct catcgattat cggtatagag gcaaccgcga tttatctcca
     2401 aatccctgaa ggagtcgaag tagacgattc cctcgcaaat atatcaacga ctatccagga
     2461 tcgccaagta ctactcgaag gcatcacctc cctgttggaa cagcaaactc aggtcctatc
     2521 cacaattatg ggactcggca tcctattcac tctcgcagtt atgttcaaca cgatggtgat
     2581 gaatatcgct gagagagact tcgaactcgc gaccctacgg gtcctcggag cttccacagc
     2641 tggtctcggc tcaatgctcc tctttgaaag cgtcctgatt ggactcgtag gcggactcgt
     2701 tggtgtcctc ttcgcattcg gaggcgctat tggtctcgct gcttccttct caacctggca
     2761 attctacttc ccagtggtcc t
//
LOCUS       DUKB01000167            7948 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_29844, whole genome shotgun sequence.
ACCESSION   DUKB01000167 DUKB01000000
VERSION     DUKB01000167.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7948)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7948)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7948
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_29844"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1087)
                     /locus_tag="HA345_05640"
     CDS             complement(<1..1087)
                     /locus_tag="HA345_05640"
                     /inference="COORDINATES: protein motif:HMM:NF034126.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019178635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Csl4"
                     /protein_id="HIH84871.1"
                     /translation="MSTSDGAFVTPGMALDLDGEVETGSGIGTTERGWIALRPGRVVI
                     SEGMADVISSGSTPRIPQIDEIIIGRVTRLHNKTAEIEILHIEGRDDADRTLDTFHRS
                     ADIFVSEIVDRFMPSPGDGMRTRDVVRARVIQSEPMVKASCKGNPALGVLHAICPVCG
                     KFLSVSDKVADQNVTCSRCDYTGYRALSNGYGHGHILPEGVDLSELNRGGERWTPEMD
                     GRLGHNGARPYLSPMADHRRGEDHEMPANKANRPVGRDGRPRREMHATKCTLCGTDTK
                     VPFEPTPGKPIRCRDCMDKVKGGNASKEELSKEREVINEMRKKAEKEAGVKLFVGGIP
                     HGASEEELRSIVEAHGEVRKVDIAKDKE"
     gene            complement(1115..1735)
                     /locus_tag="HA345_05645"
     CDS             complement(1115..1735)
                     /locus_tag="HA345_05645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013966722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HIH84872.1"
                     /translation="MRMRKLAMTLSQLPRHPLKEPTLEQYSTDGEVAAKWLASIDMKA
                     PFEEVDGVIDLGAGNGILGIAALLLGAPHAVFVEIDIEVCEVLQQSIGLMGFNDRCRI
                     INGDVTDIGDNLVHDVVIMNPPWGRQTPKADRPFLLAADRCARSTIHLLHGRGAAHID
                     PWAEKTGWESTRWMEVDLPLPASYPHHTRKRGSTEAAMWWLERPTR"
     gene            complement(1762..1971)
                     /locus_tag="HA345_05650"
     CDS             complement(1762..1971)
                     /locus_tag="HA345_05650"
                     /inference="COORDINATES: protein motif:HMM:NF024637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HIH84873.1"
                     /translation="MVHCTECGREQSDETKFCRYCGERTPGPDLTAQLRREAAAIQQA
                     KQSGAAPTSSTPQSSVRTGYRLGGV"
     gene            complement(2008..2766)
                     /locus_tag="HA345_05655"
     CDS             complement(2008..2766)
                     /locus_tag="HA345_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84874.1"
                     /translation="MARTEMKRGTLKGITVGSNDGRTHVLLLMPRAHRPDYESKIDMI
                     AHTETVYSTYLRPREGKEAIRDSGMEPDDHSFHLINIATRDLGVWMQNLIQQGWNRCE
                     MEVIPNNDTAMDIMCFGHPSSTVVERLPLPWNPFDVEGRCYNHIPDGTTIIEDAPDDL
                     DSDKVSEDISSTDSEIVEAEPVEAPAEITKVVVAEVPASELLEEEVRRTIDLLRADGM
                     DMMQVMEHPKFAEVSERAGAANVDVWTMVVSTFQ"
     gene            complement(2818..3891)
                     /locus_tag="HA345_05660"
     CDS             complement(2818..3891)
                     /locus_tag="HA345_05660"
                     /inference="COORDINATES: protein motif:HMM:NF013298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84875.1"
                     /translation="MGEGVGVILLGAGGLVAQRIQERLASHPLFRLEVVAGSPNTAGR
                     RLTDLKWDLDSPRPINLNHVVLSMKELLDAYDPNKTPIAFSTLPSDIAAEVEPTLVKR
                     GCRVYSNASTHRMLSNTPLIIPEVNGTVLERRKIENAGIICSTNCTVMPVAMTLAPIH
                     RAHHIQNVRIRTEQSLSGGGAALLRSGKLGEAFNQKIPGEAEKMEDELRRLLADIDDD
                     GIEEYATFDVDIECSRVGRPFGHEVHIEARTESIIDEEEILRLWATQSSVLHLALPSS
                     PTFPLMVRETIQPDRDLRAGEEAIGSAATFDLKQGMAIVVTPPRIENGWIRWRAFSAN
                     TIRGAAGGCVLLAEFDTQLRTRS"
     gene            4009..4935
                     /locus_tag="HA345_05665"
     CDS             4009..4935
                     /locus_tag="HA345_05665"
                     /inference="COORDINATES: protein motif:HMM:NF027681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HIH84876.1"
                     /translation="MGGERILVTGGGGFIGRHLVNLLLRKGRLVTVLDDLSTGRMIEG
                     ESNVRFIVGDIADPAFRSEALEDCCALVHLAAIASVPRCEGDPSLSERVNQRAAINLF
                     DEAAKAGVLAMVHASTSALYGVPEFLPISESHPIAPIGVYGLDKQAAELAITSRDDVG
                     ACALRLFNVYGIGQPSGSPYSGVLTIFSERLRNQQPLTVFGDGIQTRDFVHVSDVVQA
                     FSMVLESLEQEGTESPVHAQALNVCSGQTRTLLETIEAFGDAIGVDPVVKFNPPREGD
                     ILHSSGTSEALMNALGWSAQMNFTDGLRSLVS"
     gene            complement(4930..5640)
                     /locus_tag="HA345_05670"
     CDS             complement(4930..5640)
                     /locus_tag="HA345_05670"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HIH84877.1"
                     /translation="MRGLTLLLPTLDEAESLASVIRRIPRDTIESAGYQLRVVVVDGG
                     STDGTKQIAQSLDCETIQQAGGRGKGNGLREAFQHFMQTEDELLVIMDADGTYRPEEI
                     AGFLEHLGPPDVEIVIGSRMKGVIGPGAMTRRNYVGNQILTWLAVVLYSRYVSDLCTG
                     YWAFKRSAIEKMRLNSTGFEIEAEMYTSAVHENINMTEIPIHYDPRIGQSKLGSIRDG
                     IRIAMKLLKRRFIRQPRS"
     gene            complement(5652..7826)
                     /locus_tag="HA345_05675"
     CDS             complement(5652..7826)
                     /locus_tag="HA345_05675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84878.1"
                     /translation="MADRLHSILDGGRDAKSRILTVPAISMLLMLTIVGSNILLIGRL
                     SIPAILILCITCEFGLRWLMMKASCSIQIPEWEFSNDDFWVLAIAVIGALALMTPHLL
                     FREPLGIDWIGFASIAEAYASTGTATMVGSTDGSWLYPPAVPGTAAALMVITGIESHR
                     AISLLGHLGIALLCAGLAGTMGRNRASGAMLVAIVLGAGIFAKSIDSGHPTILSLLPL
                     IPLLLLTLSPRENRNKLWPLIAFLCIASAFTIHPTGGIYATLLLLADQVHESVFKTKD
                     MRAFLGWAITVGLGWIIVNGFLNSLVTGPIIAEYGWQGGGHLLRWNMPLLLVALWGFK
                     RGHQSMETRILIVWFILLWLSSLIHLLIGLEGSTFLTVSALVLYSMAMHGFHIPLACL
                     AAFAISPNPNGWLQRRDTMEIAPLPNPITPQILHTCFAIGGVLLLFTLAWFGSLTNHP
                     ELWARTEGDAELQSSLDLPEGSLVYVENRPWGHVIGTDVDVQRTAHPRVGITIMEESI
                     HNMVHNSIVWDDTDRISELGVTHAISSPRGEIGFHLAKSDHWSIEQEFDGSRLWTFHS
                     EPTIESALSHTIHPIDSVGCNDGCEWRSSPWTNLYPWKITTVTEERAFLTTGGVDETI
                     EIAESFNSDTARITVILEATPGVIITLEIDAGGNTSTVRQTMEGRLTTVTTTAEINHN
                     ETLSVRIRADTPEGVWLNPQGISGRGDRIIDMNGAWIHWIEV"
BASE COUNT         1865 a         2001 c         2007 g         2075 t
ORIGIN      
        1 cttccttgtc cttagcgatg tccacctttc ggacctctcc atgggcctcg acaatggacc
       61 gcaactcctc ctcacttgct ccatggggta tgcctcctac gaacaacttg acaccagcct
      121 ccttttcggc cttctttcgc atctcattga tgacctcccg ctccttggag agttcctcct
      181 tacttgcgtt tccacccttc accttgtcca tacagtctcg gcacctaatt ggcttgcctg
      241 gagttggttc gaagggaact ttggtgtcag ttccacagag cgtacatttg gttgcatgca
      301 tttcccggcg agggcgccca tctcggccga ctggtcggtt tgctttattg gcaggcatct
      361 cgtgatcctc gccacgacga tggtcagcca taggagatag ataggggcgt gccccgttat
      421 ggccgagacg tccatccatc tccggagtcc agcgttcacc tccacgattc aattcgctta
      481 gatcgacacc ttctgggagg atgtgtccat gtccgtatcc attggatagc gcccggtaac
      541 cagtgtaatc acatcggcta caggtgacgt tctgatctgc aaccttatcg gaaacagaca
      601 ggaacttgcc acaaacagga caaatcgcgt gtagaacacc aagtgcaggg ttgcccttac
      661 aacttgcttt aaccatcggc tcagattgga tgacgcgtgc tcgaactaca tcgcgggtcc
      721 tcatcccatc tcctggagat ggcatgaagc gatccactat ttccgagaca aagatgtctg
      781 cagagcgatg gaatgtgtcc aaggttctgt ctgcatcatc tcggccttcg atatggagaa
      841 tttcaatctc tgcggtcttg ttatggagtc gagtaactct accgatgatg atttcatcga
      901 tttgagggat tcttggtgtg gagcctgaac tgatgacatc agccatgcct tcagagatga
      961 caactcggcc cggacgaagt gcaatccagc cacgttccgt tgttccaata cccgaccctg
     1021 tttcgacttc accatcgaga tcgagggcca ttccaggggt gacgaaggcg ccatctgagg
     1081 tggacatcga acatagggac tggacagttc cctttcaacg cgtcggccgt tccaaccacc
     1141 acattgcagc ctcggtggac ccacgtttcc gagtgtggtg agggtaactt gcaggaaggg
     1201 ggagatcgac ctccatccag cgcgtggatt cccatccggt cttttctgcc catggatcga
     1261 tgtgggctgc tccacggccg tggaggaggt gaattgtcga acgtgcacag cggtcggcag
     1321 caaggagaaa cggtcggtcc gccttcggcg tctgacggcc ccaaggggga ttcatgatta
     1381 caacatcatg gacaaggttg tcacctatat ccgtaacatc tccattgatt atacgacatc
     1441 gatcattgaa tcccatcaat ccaatggatt gctgaagaac ttcacatact tcgatatcga
     1501 tctcaacgaa gacagcatgg ggtgcaccta gaagtagagc tgcaatccca aggattccat
     1561 ttcctgcgcc taaatcaatg actccatcga cctcttcaaa gggtgctttc atgtcgattg
     1621 atgctagcca tttcgctgct acttccccgt cggtgctgta ctgctctaga gtgggttcct
     1681 tcagaggatg gcgtgggagt tgtgagagcg tcatggcgag tttacgcata cgcatggaat
     1741 gtatccctcc aggtggcggg gttatacccc accgagacga tacccagtgc ggactgagga
     1801 ctgaggtgta ctcgatgtag gagcggctcc gctttgcttt gcttgttgga ttgctgctgc
     1861 ttccctacgg agttgcgcag ttagatctgg tcctggcgtg cgttctccgc aatatctgca
     1921 gaacttggtc tcatctgact gctcacggcc gcattccgtg cagtggacca tgactctacc
     1981 aattgctgca ggggtatgaa cagttcgtca ttggaacgta ctgactacca tggtccatac
     2041 atccacattg gctgcacctg cacgttccga gacctccgca aacttgggat gctccatcac
     2101 ttgcatcatg tccatgccat ccgcccgtag taggtcaatc gtcctacgaa cttcttcctc
     2161 cagaagttct gatgcaggga cctctgcgac aacgactttt gtgatctcag cgggcgcctc
     2221 cactggttcg gcttcaacaa tctctgaatc agtggaggag atatcctcgg agaccttatc
     2281 ggaatcaaga tcatcaggtg cgtcctcgat gatagtggtt ccatctggga tgtgattgta
     2341 acatctccct tcgacatcaa aagggttcca aggtagaggc agacgttcga caacagtact
     2401 tgatggatga ccaaagcaca tgatatccat cgcggtgtca ttatttggga tgacttccat
     2461 ctcgcatcga ttccaaccct gctggatgag attctgcatc cacaccccaa ggtctctcgt
     2521 tgcgatgtta atcagatgga aagaatggtc atcaggttcc atgcctgaat cacgaatggc
     2581 ttccttgcct tcacgggggc ggagataagt ggagtatacc gtctcggtat gagcgatcat
     2641 atcaatcttg gattcgtaat cagggcgatg tgcacgcggc atcagaagaa gaacatgtgt
     2701 tcttccatcg ttggaaccaa ctgtgatgcc cttgagagtt cctcgcttca tctccgtgcg
     2761 ggccatgtcg tttccaacat gaaggcggtt atagcaatca cgcgaatccg tgatatttca
     2821 tgaacgcgtt ctcagttgtg tatcgaactc agcgagtagt acacaaccac ctgctgcacc
     2881 acgaattgta ttcgcggaaa atgccctcca tcgaatccat ccgttttcga ttctaggagg
     2941 tgtcacaacg atggccatcc cttgtttgag gtcaaatgtg gcggcacttc cgatcgcctc
     3001 ctctcctgct cgtagatctc tatcgggttg aattgtctct cggaccatga gtgggaatgt
     3061 tggagaggag gggagagcaa gatggagaac agaggattga gtcgcccata ggcggagaat
     3121 ctcttcttca tcgataatac tctcagttcg ggcttcgatg tgtacctcgt gaccaaaagg
     3181 ccgacctact ctggagcatt cgatatctac gtcaaacgtt gcatactcct cgatgccatc
     3241 atcatcaatg tccgcaagta atcggcgtaa ttcatcttcc atcttctctg cttcaccagg
     3301 tattttttga ttgaatgcct ctcctaattt cccgcttcga agaagagcgg cacctccacc
     3361 ggacaaggac tgctccgttc tgattcgtac gttttggata tggtgtgcac gatgtattgg
     3421 agccaatgtc atcgcaactg gcatgactgt acagttagtt gagcagataa tgcctgcatt
     3481 ttcgattttc ctccgctcaa gtacagttcc gttgacttct ggaataatta gtggggtatt
     3541 agacaacatt cggtgggtag atgcattcga atagacgcga cagcccctct ttacgagagt
     3601 aggctcaacc tcagcagcga tatccgatgg aagcgtactg aaagcgatgg gagtcttatt
     3661 tggatcatag gcatccagta gttccttcat tgatagtacg acatgattga gattgattgg
     3721 gcgaggtgaa tctaagtccc acttgaggtc tgttagtcgg cgaccagcgg tgttagggga
     3781 gccagcaact acctctagtc ggaacaatgg atgggaagca agacgttctt ggatacgttg
     3841 ggcgacaagg cctccagccc cgagaagaat aactccgaca ccctctccca cgaaccttcc
     3901 cctatcttcg gcgtatcata ctgcgattat tgaatcgtcg ctctagccct cataaccatc
     3961 aggaatctaa ccaaattttc atgagcatag ataagtgatt catgaaatat gggaggagaa
     4021 cggattctcg tgaccggagg cgggggattc atcggtagac acctggtgaa tctccttttg
     4081 cgcaagggtc ggctagtaac agtcctcgac gatctctcca ctggtaggat gatcgaaggg
     4141 gaatcaaatg tccgtttcat cgtaggcgat attgccgatc cggcatttcg ttctgaagca
     4201 ttggaggatt gctgtgctct ggtccatctc gctgcgattg cttctgtgcc acgctgcgag
     4261 ggggatccat ctctcagtga gcgggttaac caacgtgcag ccatcaatct cttcgatgaa
     4321 gctgctaagg ctggagtcct tgcgatggtt catgcatcca cttcagctct ttacggggtg
     4381 ccagagtttc tacccatttc tgaatctcat ccaattgccc caataggagt atacggcctc
     4441 gataagcagg ccgcagagtt agccataact agtagagatg atgtcggcgc ctgtgcatta
     4501 cgcttgttca atgtctatgg tataggacag cccagtggtt ccccctacag cggagtactt
     4561 accatcttca gtgagcgctt acgtaaccag cagccattga cagttttcgg tgacgggata
     4621 caaactcgcg atttcgtcca tgtctcagat gtagttcagg cgttctccat ggttcttgag
     4681 tcattagagc aggagggtac agaatcacca gtacatgccc aagccctcaa tgtctgttct
     4741 ggtcagacca gaaccttact cgagacgatt gaagcctttg gagatgcaat tggtgttgat
     4801 ccggttgtca agttcaaccc tccgcgcgag ggtgatattc tacacagtag tggaacttca
     4861 gaggctctga tgaatgcatt gggttggtct gcgcagatga atttcacgga tggcctccgt
     4921 tcactagttt catgatcgtg gttgacggat gaatcggcgc ttgagtagtt tcatcgctat
     4981 gcggattcca tcacgaattg aaccaagctt cgattggccg atccgcgggt cataatgaat
     5041 tggaatttct gtcatgttga tattttcgtg aactgcagaa gtgtacatct ccgcttcaat
     5101 ctcgaatccg gtcgaattca gtcgcatctt ttcaattgca gagcgtttga atgcccagta
     5161 tccggtgcat aaatcagaga cgtagcggct atagaggacg acagctagcc atgttaggat
     5221 ttgattcccc acgtagttcc gtctcgtcat ggcgccaggt ccaattacac ccttcattcg
     5281 cgatccgatt acgatttcaa catctggggg cccgaggtgt tccaagaaac ctgcaatttc
     5341 ctctggacgg taagttccgt ctgcatccat gatgactaga agttcatcct ccgtttgcat
     5401 gaagtgttgg aacgcttctc gtaagccatt tccttttcct cggccgcctg cttgctgaat
     5461 agtctcacaa tctagtgatt gagcaatttg cttggttccg tcagtcgaac ccccatcaac
     5521 aacaacaact ctgagttgat atcctgcgct ctcgatagta tctcggggga tccgtctaat
     5581 cacactggcg agagactctg cttcatccag tgttgggagg agtaatgtca gtcctctcat
     5641 gtgaggtcct cctaaacttc aatccaatga atccatgctc cattcatgtc aatgattcga
     5701 tcacctctac ctgagatgcc ttggggattc aaccataccc cttctggcgt gtccgcccga
     5761 atacgtactg agagtgtttc gttgtgattt atttccgcgg tggttgtaac tgtggtcagc
     5821 ctcccctcca tcgtctgtct tactgttgaa gtgttaccgc cagcatcgat ttctagtgta
     5881 ataatcactc ccggggttgc ttcgagaatt actgtgatcc tcgctgtatc tgaattgaat
     5941 gattcagcga tttcgattgt ctcatctaca cccccagtcg ttaggaaagc tcgctcttct
     6001 gtgactgttg taatcttcca tggatacagg tttgtccaag gggaagaacg ccattcacag
     6061 ccatcattgc aaccaaccga gtcgattgga tgtattgtgt gggagagagc agattctatc
     6121 gtcggttctg aatgaaatgt ccagagccgg ctcccatcaa attcttgttc gattgaccaa
     6181 tggtccgatt tggcaagatg gaagccgatt tcccctcttg gacttgagat tgcatgagtc
     6241 acgccgagtt cggatattcg atccgtatca tcccacacga tggaattgtg taccatgttg
     6301 tgtatgctct cttccataat cgtaatgcct acgcgaggat gagcggtccg ttggacgtca
     6361 acatccgttc caatcacatg gccccaagga cgattctcga cgtagacgag gcttccttct
     6421 gggaggtcta atgaagattg taactctgca tctccttcgg tgcgagccca tagttcggga
     6481 tggtttgtca aggagccaaa ccaagcgaga gtgaacagta ggaggactcc tcctattgcg
     6541 aaacatgtgt gaaggatttg cggagtgatc ggatttggaa gtggggctat ctccattgtg
     6601 tctcgccgtt gtaaccaacc attggggttt ggagagatgg cgaatgctgc aaggcaagcg
     6661 agcgggatgt ggaatccgtg cattgccata ctgtagagaa caagagcact aacagtaagg
     6721 aaagttgatc cttcgaggcc gattaggaga tggatgaggc ttgataacca gagaagaatg
     6781 aaccatacaa tgaggattcg ggtttccatt gattggtggc ctcgcttgaa tccccataag
     6841 gccaccagga gcagaggcat gttccatcgg agcaagtgac ctccgccttg ccatccgtat
     6901 tcagcaataa ttgggccagt taccaaacta ttgagaaacc catttacgat aatccatccc
     6961 aatccaacgg taatcgccca accaagaaac gctcgcatat ctttggtctt gaagacactc
     7021 tcgtgaacct gatccgcgag tagaagcagg gtcgcataga ttcctcctgt tgggtgaata
     7081 gtaaaggcgg aagcaatgca taagaatgca atcaatggcc aaagtttgtt gcgattttcc
     7141 cgtggactta gggttaacag aaggagcgga ataaggggta gtagagagag gatagtcggg
     7201 tgtcctgaat cgatactctt ggcgaagatt ccagcgccta ggacgatggc aacgagcatc
     7261 gctccactag ctctgtttct acccatagtt ccggcgaggc cggcacatag tagggcgatg
     7321 ccgaggtgcc ctaataggga aatggctcga tgtgattcga tgcctgtgat gaccattaga
     7381 gcagcagcag ttccggggac tgctggagga tataaccaac ttccatcagt agatccaacc
     7441 atggtcgcag ttccagtgga tgcgtatgct tcagcaatag atgcgaatcc aatccaatct
     7501 atgcccaatg gttctcggaa gaggaggtgt ggggtcatca atgctaacgc cccaattaca
     7561 gcgatggcca atacccaaaa atcgtcattt gagaattccc attctggtat ttgaatcgag
     7621 caactggctt tcatcatgag ccatcgtaga ccgaattcac aggtaataca gagaatcagg
     7681 atggcaggga tactaagtcg accgatcaat aggatgtttg agccaacaat cgtcaacatt
     7741 aggagcatag agattgcggg caccgttaga atccgggatt tagcatcccg ccctccatcg
     7801 aggatagaat gtaaacggtc tgccattgag aggcagggcg caattaagag aagaatcgcg
     7861 agggattcga tgcgcccacc ctacccctgt tctgaggagg accctcatag cggattccct
     7921 acctcaggtg ttcatggtca attggcga
//
LOCUS       DUKB01000168            2732 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_272748, whole genome shotgun sequence.
ACCESSION   DUKB01000168 DUKB01000000
VERSION     DUKB01000168.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2732)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2732)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2732
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_272748"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            27..341
                     /locus_tag="HA345_05680"
     CDS             27..341
                     /locus_tag="HA345_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84879.1"
                     /translation="MGRNDILRTIKDAEATAEETVRSAKDKAAKILSEARVSASDALN
                     TGKKDADSSAQAAIQTARDAAAGDAAVVQKDGSENVDSINSSAESNRDAAVQSVIDTI
                     LS"
     gene            370..2583
                     /locus_tag="HA345_05685"
     CDS             370..2583
                     /locus_tag="HA345_05685"
                     /inference="COORDINATES: protein motif:HMM:NF013647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84880.1"
                     /translation="MAGELTNRPMARFNAAGVRKDLDSVMHILCSLKAVDLIDFDGEE
                     GEYLNLGSPRDNHDTVAKNLSTYRSISKWVDSSRPGSTQSEKTVRGWINGELTTEIES
                     ISETIAGIEDARSDANAAEERIAALGSFVELGVDLDLFDGYRTATVFIGQIGDKGSGQ
                     DALRSAGVSGHTASGGGLTMVVVANEDAAAVNNALESMRFSAVQPPSGTGSPREALSE
                     ATSLLKKLNLEAEKLESALDSWASKNGEKLVCGLELLERDFIEATAPARVAVSQHAFM
                     IDGWIVADREDEVRAALKGLCSYIEVDTDVAPKHHGVHGHGHHNDPSPPVAFGDHGLS
                     RPMELLTDAVGRSDYGKIDPTVFMLITYPLFFGLMLGDMLYGLMTLGLAGLIYSRVKD
                     SGNDLGILGAKLVAYIGLSTVLFGYIYGEFAGFEILPHYESCGAYAGTSGHAIAEVAS
                     GECHKGWHPYDGVPAWASSFSALYPYGGEFPNVVEHYGDHSLWETHLPMGVVLAFPFH
                     RVSYNLTDLILLTIYLGIAHLMMAFILGAIDEIRHGHGWSGALYGKVSWMLVLGGGFF
                     FSYAYLISGGGPSPEYAELLSNLKLGGLIAAAIGVVLLLVHLVHEGVPLWVACILAPI
                     EAIGMLPTTLSYVRLFAVGIVGVKIAEAGNSLLYPMIVEGFSTGGSILVAVLALIGWF
                     CVQIFAWVLGVFSPNIHAARLHFVEWMRQFYTASGKAFAPLGGRSRFVEVDTGQQ"
BASE COUNT          601 a          651 c          740 g          740 t
ORIGIN      
        1 agtcccgcgt catagggtag gttgcaatgg gtcgaaatga catcttgcga acaatcaaag
       61 atgctgaagc tacggctgag gaaacggttc gttctgctaa ggataaggct gcaaagattc
      121 tgagtgaagc acgcgtatct gctagcgatg cgctcaatac tggaaagaaa gatgctgatt
      181 catctgctca agcagcgatt cagactgccc gggatgccgc agctggtgat gcagcagttg
      241 tccagaaaga tggctcggaa aatgtcgatt caatcaacag ttctgccgaa tctaatcgcg
      301 atgccgcggt tcaatcggtc atagatacta ttctttcatg aggctgttta gtgaagaagg
      361 tgttgagata tggctggtga actgacgaat cgtcctatgg cgcgattcaa tgccgccggt
      421 gttcgcaaag accttgattc tgtgatgcac atattgtgtt ccttgaaggc tgttgatcta
      481 atcgacttcg atggagagga aggagagtat ctgaatctgg gctcccctcg agataatcat
      541 gatactgtgg cgaagaatct ctctacctat cggagtatat cgaagtgggt tgattcctcc
      601 cggcctggta gcactcagtc cgagaagacg gtgcgtggtt ggatcaacgg agaactcaca
      661 accgaaattg aatctatttc tgagaccatt gcgggaatcg aagacgcacg gtcagatgct
      721 aatgctgctg aagagagaat tgctgctctc ggctccttcg tcgaattagg cgtcgacctc
      781 gatctcttcg acggttatcg tacagcgact gtattcattg gccaaattgg tgacaaaggc
      841 tctggtcaag atgcactacg ttctgctggc gttagtggcc acactgcttc aggtggcgga
      901 ttgacaatgg ttgttgttgc aaatgaggat gcggcagcgg tcaacaatgc tctggaatct
      961 atgcgatttt ctgcagttca acctccctct ggaactggat ctccacgaga agctttgtct
     1021 gaggcaactt ctctactcaa gaaactcaac ttagaggcgg agaagcttga atctgccctt
     1081 gattcctggg catcgaagaa tggagagaag ttggtttgtg gccttgaact cctcgaacgt
     1141 gacttcatcg aagccaccgc tcccgctcga gtggcggtga gtcagcacgc cttcatgatt
     1201 gatggttgga tagttgctga tcgtgaagat gaggttcgtg cggctctcaa aggtctttgc
     1261 agttacatcg aggtagatac tgatgttgct cctaagcacc acggcgtcca tggccacggc
     1321 catcacaatg atcccagccc tccggtagcc tttggcgatc atggtctatc tcgtcccatg
     1381 gagcttctta cggatgctgt agggcgctca gattacggaa agattgaccc aacggtcttc
     1441 atgctaatca cctaccctct atttttcgga ttgatgctag gtgacatgct ttacgggctt
     1501 atgacgctcg gtcttgcggg cttgatttac tcccgcgtca aggactcagg taacgatctt
     1561 ggtattcttg gtgcaaagct tgttgcctac atcggactgt ctacggtcct atttgggtat
     1621 atttatggcg aattcgcagg gtttgagata ttgccgcatt acgaatcctg tggtgcatat
     1681 gcagggacat cgggacatgc tattgcagag gtggcatccg gagagtgtca caagggctgg
     1741 catccatatg atggagtccc tgcttgggca agctccttct ctgcactcta tccctatggg
     1801 ggtgaattcc ccaatgttgt cgaacattat ggcgaccaca gcctatggga gacacatctc
     1861 ccgatgggcg tcgtcctagc cttccccttc catcgagttt cctataatct aacagatcta
     1921 attctattga caatttatct cggtattgct cacctcatga tggccttcat tcttggtgca
     1981 atcgatgaga tacgtcacgg gcacggttgg tccggcgcac tatacggaaa ggtgtcctgg
     2041 atgcttgtgc ttggtggcgg tttcttcttc tcatatgcct acctcatttc aggaggtggc
     2101 cccagtccag aatatgctga gctgctttcc aatctcaagc taggaggtct aatcgcggct
     2161 gcaataggcg tggttcttct cctcgttcat ttggtgcatg agggtgtgcc tttgtgggtc
     2221 gcatgcatac ttgctccaat cgaggcaatc gggatgctcc ctactactct gtcctacgtt
     2281 cgcctctttg cagtgggtat cgtcggcgtt aaaattgctg aagcagggaa ttctctactc
     2341 tatccgatga ttgttgaagg gttctcaaca ggcggctcaa ttctagttgc agttctcgct
     2401 ctcatcggtt ggttctgcgt ccaaattttc gcatgggttc ttggagtatt tagtccgaac
     2461 attcacgctg ctcgtctcca cttcgtcgag tggatgcgcc aattctacac tgcttccggg
     2521 aaggccttcg cgcctctcgg gggtcggtcc cggttcgtgg aggtggacac ggggcaacaa
     2581 tgacattccc gcgcggtttc gcgccggata caaacacacg gaggaagaag aaatgaaccc
     2641 gaaaatgatg aggaacgcac tacgaatgat gattgtcctg ttggccgtta ttggcttgac
     2701 agacgtggtc gcagcggccg gggcagatgc ag
//
LOCUS       DUKB01000169           12283 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_51910, whole genome shotgun sequence.
ACCESSION   DUKB01000169 DUKB01000000
VERSION     DUKB01000169.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 12283)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 12283)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12283
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_51910"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="HA345_05690"
     CDS             complement(<1..737)
                     /locus_tag="HA345_05690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84881.1"
                     /translation="MAELPQGEVTERRRGGPGVLALLMLDATRTRFNGHLRIESLDGA
                     VGGLGIIDGMPAMAIHTSEGGEVAGGRDAMDRCLTSSADPSAALSVHSGNHVPAMMDS
                     HPHSRLLRSDLERLEEEPWWSDSRHRDLVAIGRQRSRWTSIESSFSRTGEDPIQFEPV
                     VMPTVVESGPSFGPGESWLVDDELPDSVLSIGSNLGSLGRPLMVFSRLPSERLRSKYS
                     IPDGSSIRLTERPSQEGDLGPSLEGIMR"
     gene            992..1690
                     /locus_tag="HA345_05695"
     CDS             992..1690
                     /locus_tag="HA345_05695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84882.1"
                     /translation="MNSLIPLIENDEIRMENLSPRNLNIWLISGALMAGLGIISEATS
                     TSSTLGIILIISSFIPTAISVTHWLENRKTAAALSIVATDSGHPWHPSDEDGDSHTYI
                     RDVKGEWIQLPPRSRIQIVSDPILKGWTVRDDDEDEKLHARLGPISEDIVELLEEVVN
                     QALILTRTLTEDEDPTLRDARQRENDAEGILERTWMDTTPGQVEIQFGQMGRAKEILG
                     RSDRQFDSASDSEE"
     gene            1730..2338
                     /locus_tag="HA345_05700"
     CDS             1730..2338
                     /locus_tag="HA345_05700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84883.1"
                     /translation="MDDWRDRIAALSDEQRAMFEGGTLSQFFLRWPLTASHPTFVGSF
                     YGLLISISLLGPILFIQSEAGSSTYDSLRSWSFLCLSLLMLCGIFGGVSALTVAITKR
                     MPIRLEQRRKYLFPIPFIGLLIFSIARIEPDLIGISDQLGWVLLIAPGPLYIHLSYAP
                     RWRLLERLSRGLELDETPMEVGKDRDLDTDLIEAVDEIHGEE"
     gene            complement(2340..3518)
                     /locus_tag="HA345_05705"
     CDS             complement(2340..3518)
                     /locus_tag="HA345_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012309282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HIH84884.1"
                     /translation="MAKDLDWMRERYEELVASGLNWDPPILESSNAPRVTIDGKESIM
                     LSANNYLNLSTHPKVVEASIEATRKYGAGSGSVRAIAGTMDIHLEAERVAADFKGVEA
                     ALIYSAGYTANVGLIPTLVKGKDDLIISDELNHGSIIDGVRLTKAQRAVYPHNDVEAL
                     ERILRENKGVDRKLIITDGVFSMDGDIAPLDEITAVAEEHDAMVFVDDCHGEGVLGDG
                     RGIVAHFGLQGRVDFEVGSYSKAMGVQGGILAGTAQTREHALNHSRSWLLSGSQPPGV
                     AAAQKAAVEVIMDEPEHVERLWGNTDYFRGELDSLGFDTGVSTTPIIPVMCGESTTAK
                     SLSAAMRDAGVIVGAIVFPMVARDKARVRTQMSAGLTRDDLDEVLRVFEKAGRTIGLI
                     "
     gene            3595..4470
                     /locus_tag="HA345_05710"
     CDS             3595..4470
                     /locus_tag="HA345_05710"
                     /inference="COORDINATES: protein motif:HMM:NF024118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84885.1"
                     /translation="MPPHPEAIILGIAQDGGVPQPACSCNTCTHYVENESRLSPTSIA
                     VRDGDDLHLFDVTRDLARQLLFIPEESRQVTDVWLTHGHLGHIDGLGLFGKEAMGASE
                     IRLHVSKSMLKLIRNTPRWNSMLEQGVFLPIPFVSNETSKCSSTLSIKPISVPHRDEL
                     TDTHAFLIQGSKRTLLHLPDHDRWDTTLTHVGMKSIRDWFEQIQADVVLLDGTFWSDG
                     EISRQTNVPHPPISETISLLGPRETHDIDIRFIHFNHTNPVISGGDESIDLDLKGWAL
                     ASEGEVIELFTDTTE"
     gene            4499..4969
                     /locus_tag="HA345_05715"
     CDS             4499..4969
                     /locus_tag="HA345_05715"
                     /inference="COORDINATES: protein motif:HMM:NF014084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HIH84886.1"
                     /translation="MELHGEVSSGLGRAHVFMAQNHYQDQFRGILGGTAWPGTLNIKV
                     SDEDLTQYLALRQKAGIDTLDATDERRNKAQEIDTSNIEALRIRGFLREGRSFGGATA
                     FKAQIRTEDLDHVECAILIPDLTRHVEVIEVIAEVFLRETLDLTDGNRVSLNLV"
     gene            complement(4952..5914)
                     /locus_tag="HA345_05720"
     CDS             complement(4952..5914)
                     /locus_tag="HA345_05720"
                     /inference="COORDINATES: protein motif:HMM:NF013575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84887.1"
                     /translation="MPKSTDDSVEVPLGDSEEEEPTQRVVMCIGYLGDAFHGSQLQPK
                     VRTSQGDVESTLRKLKWLGVDDHIWLSSRTDAGVHVRMNLASFDLPLSRWDSIGPDSL
                     LRALNDRLEDDIIVWSAYAVSDDVTVRLARRRVYFYRLQALLNWPVDMSPERLARWCR
                     VFEGGHDFTNFCRVEEGRTTVRTVHRCTPWVDVNGRVVGFRIEAESFLWNQVRRIAST
                     LHGLATENLDLSDVIRALHRPSDSIDFGRSPSDWLMLWSIQHPALPDLDTMPLESISE
                     WSNPPGGTDQRLHERWQEIARKEMKLMLQRGWIQGMEFQSDEIE"
     gene            complement(5925..6485)
                     /locus_tag="HA345_05725"
     CDS             complement(5925..6485)
                     /locus_tag="HA345_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84888.1"
                     /translation="MDPPMVDDELLTKAAQCITGGDFLGAMDIFQTVMDNHSDSPVGF
                     HGWAEAAMFEIQENGNIDDSGNDRFNEGQIQSFLKKATKMEPDNPEYLAAFANALIEF
                     DRVPMAIREFQRLHELGQASEENDVSFHLYEAARLLIDSIDVKTNFDRSHDFARKYVR
                     TAIEFSLLGLGFSSAEEAMEYMTSDE"
     gene            complement(6554..7570)
                     /locus_tag="HA345_05730"
     CDS             complement(6554..7570)
                     /locus_tag="HA345_05730"
                     /inference="COORDINATES: protein motif:HMM:NF015648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HIH84889.1"
                     /translation="MGGQMDTFREKLDVEAARDAVPEMSPYEEPYYRSGPIVLSMFPR
                     YLLIVFVMAVHLLFGIGYEAPEGEGGLNFLLNLFELLVSTGIAGFFVMMMILTWINRF
                     VNFSTSGGLYTVSLLVISITPGVFFIETVLTDSFISGFIGLQDSGFLPEWKDSFYLIF
                     GGGYAGVMFILTVLYQRAFTYVITDKQVYLKKDFLKFIDSNSHAISLSKIENLKVERS
                     LIGRILGYGSLHVITASGLGLKEDSMSFGAGAVTDVTDAATKETSNLVVRLFRFFIFM
                     MRLQRTRKTVDLNPEDCFYGIRRPMDVYALVNELRTRPGAPVDGAPADSNPEVASSTE
                     SIPE"
     gene            complement(7631..8800)
                     /locus_tag="HA345_05735"
     CDS             complement(7631..8800)
                     /locus_tag="HA345_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84890.1"
                     /translation="MERFEGDLDTLWRLDFLPTMHRLTWQWWWWLVVLPCKDHPERSR
                     QLMVLWSTKDTASIDVSGIPWGGERFHTDEHGGHVLGGMVCAWWYDGDRMYEPLVLRK
                     CRMAAIDHRHPSWPSDSLGGAVVPLTEDDLSMGLQPDASSFWLKLRSDEEHVAAGAPA
                     SFDLEMTPWNPAISGVTRSNNVFTGTMGYDILRIHGTKAKGRIGDEEVEGTAYFQKVI
                     VQAPSVPWFWGFLHFDDGSYFDWFFPHLSLSMTSNDSTAWRRRDRHRVPIRTAGLFHD
                     ARRQRTERFERCEVEVLHPGEGGPVDDQGSPLPGFKVRVWNGRTQISTILRASSRAHW
                     TFDQTTRAGLTSHFTYNEYPLVVEEIAICDEVEVRTAETYGWIRGNAEHSWGLLH"
     gene            complement(8839..10581)
                     /locus_tag="HA345_05740"
     CDS             complement(8839..10581)
                     /locus_tag="HA345_05740"
                     /inference="COORDINATES: protein motif:HMM:NF024091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HIH84891.1"
                     /translation="MTEKSRAYGDSSESSVTTSLVKSPVAPSGPSKPSLPPPRVLDTV
                     WTGLDRKASAIIEFTSRQLRVRSSTWVIGAVGVLVMTLLLATYAQEMATGIEPIDDDG
                     DSEDWDGDGYPQGQENQYGTSDWDAKEFPGSGRFVDVDWLDWDDRNVTGNYTYNGNGI
                     IEEYTWFANNSDDDRFIAINEQRSCSWEEEYTYGLGYGDSCMTDDNEIRFYGLVTVNG
                     TLAKSDQGWLSWGEMVGQSDTVVEPHDPSIYIDEDGINLDIDSGNVSQGYDDDGDCRN
                     YQDESTSIPDQTEYYWYSDMQDTNGNGIDCDVELIFDEDGNLIRIEADWGVDEDPSES
                     EFTLESAHRGFILAVSKVAFLFILGIFIPMFLATGLVRDEMASGTMYYLVGKPIHRAE
                     FFLYRILGFMLLAGPYMLGLAVTVGIVTGFLGPSESLFRFQDLTVWLIVGIASALVLL
                     AYSTTFAMFGVLSKRFGAYIAIVMGLWEFIMAFFSLLSGGQSRIAWLSVSHWGIEMVN
                     AAALIAWPDSQYYDIIGEGYYDSADIFSVFWNAPTTNESPAVALLVAAGVLVVYVLLM
                     VGLGQSFLGRREID"
     gene            complement(10578..11567)
                     /locus_tag="HA345_05745"
     CDS             complement(10578..11567)
                     /locus_tag="HA345_05745"
                     /inference="COORDINATES: protein motif:HMM:NF012235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH84892.1"
                     /translation="MMPDFDQVGQPAVQSIRVDATVPAVMLDHVTKFYGQVIGLNDVS
                     LAIGGGVTGILGQNGAGKSTLFKLLVGRLKPSKGSVRLFGVDPWRNPAPYSRIGYVSE
                     GEKLYDWMTGHEFVATLARLYGFTRDEAGARADHVLDFVNLSDVAHKQIGKYSKGMRQ
                     RVKIAHALVNDPDLIVLDEPLQGCDPVARTTIMNVIREIGSMGKTVIVSSHILSEIER
                     ITEQIVILHNSRLLALGNLHKIRSLLDKHPHRILLRTDEPRHLAAHVLPLEAIHGVRF
                     PLPGELELQTNDLNSVHSALPSLIRSSNIRVSAITNPDDNLESLLAYLTEGRS"
     gene            complement(11564..>12283)
                     /locus_tag="HA345_05750"
     CDS             complement(11564..>12283)
                     /locus_tag="HA345_05750"
                     /inference="COORDINATES: protein motif:HMM:NF024741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84893.1"
                     /translation="SMAALGFLLLASLIGDPTIMRGFGLNRVNIYTKILGFFPRNALF
                     WPLLTALVIGGMISEDRAHGTSAIYFSRPINRIDYAAMKYLSVASILGGVILISYVSF
                     YSLAIVVEGRGWGYIFDSFPLFISGLGIAFLLIITYTSIGMALSSVSKGKFFPAVGFL
                     SIILGTKLLAFLVDNLFDQSIVYLISPYDNLAHLGQYLMGIDLRYDHPVAFSVVSLLA
                     INAVSLYVLSARVNSLEVTRE"
BASE COUNT         3404 a         3238 c         2887 g         2754 t
ORIGIN      
        1 cgcataatac cctcaagact agggcctaga tccccctctt gagacggcct ttcagtcaag
       61 cgaatagaag aaccatcagg gatagaatac tttgagcgca gcctctcaga aggcagacga
      121 ctgaagacca tcagaggccg tccaagtgaa ccaaggttag acccaatcga taagacacta
      181 tccggcaatt catcgtcaac gagccaagac tcgccgggcc caaaggatgg accgctctcg
      241 actaccgttg gcatcacaac gggttcgaac tgaataggat cttcacccgt tcgagaaaat
      301 gaagattcga tacttgtcca tctactcctc tgccgtccaa tcgcgacgag gtcacgatgt
      361 cgtgaatcag accaccaggg ctcctcctca agacgttcaa gatcagaacg taggagacgt
      421 gaatgaggat gagaatccat cattgcaggc acatgattcc cagagtggac tgacaacgca
      481 gcacttggat ccgcagagga ggtcaagcat cgatccatcg catcccggcc cccggccact
      541 tcgccaccct cggaggtgtg gatagccata gctggcatcc catcgatgat tccaagcccg
      601 cccacggcac catcaagtga ttcaatacgg agatgtccat tgaatctggt acgagtcgca
      661 tcaagcataa gcagagcaag aacaccgggt ccaccacgcc gacgctccgt gacttcgccc
      721 tgtggtaact ccgccattcc caaacccact gctgaatggc cttccaaccc ctattgaaac
      781 ccccgctcac ctctcagtca aggcggccgt ttcgaccgtt ttctacgaac gccgacaacg
      841 aggattgaag catatgactc gactcaggac accatggccg aaactaccaa tcacgattgg
      901 gcggaattga ccatttgaca aagtaggaaa tttaagcagt cctgattgat gtcactcaac
      961 caagaacttg gcaactcccg gatgcgagaa aatgaattca ctaatcccct tgattgagaa
     1021 cgatgagatt cggatggaaa atctgagtcc acgcaacctc aatatctggc taatttctgg
     1081 tgctttaatg gcaggattag gaattattag tgaagcaaca tccacaagtt ctacacttgg
     1141 aataatcctc atcatatcct cattcatccc tacagccata tccgtcacac attggttgga
     1201 gaatcgtaag acagccgctg cactctcaat tgttgcaacg gatagtggtc acccttggca
     1261 cccttcagat gaagatggag attcacatac ctacatccgc gatgtcaagg gggaatggat
     1321 tcaactccct ccacgatccc gcatccagat tgtttccgac cctattctga aaggttggac
     1381 tgtgcgtgat gacgacgaag atgagaaatt acacgctagg ctcggaccaa tctcagaaga
     1441 catcgtagaa ttactagaag aagtggtcaa tcaagcgtta atcctaacac ggaccctcac
     1501 agaagacgaa gaccccacat tacgtgacgc tcgacagaga gaaaatgacg cagaagggat
     1561 actcgagagg acatggatgg atacgacacc tggccaagtt gagatccaat tcgggcagat
     1621 ggggcgggcc aaagaaatcc ttggccgcag cgataggcaa ttcgattcgg catccgactc
     1681 tgaagaatga cgcaacggtc ataggcataa tccttcaaat cgcaacctca tggacgactg
     1741 gagggatcgg attgctgccc tctcggatga acagcgcgct atgttcgaag gagggaccct
     1801 gagccagttc tttcttcggt ggccacttac tgcatcacac cctaccttcg taggctcctt
     1861 ctacggcctc ctaatctcca tctcactact tggccccatt ctcttcatcc aatcagaggc
     1921 tggaagttca acctatgata gcctgcgcag ttggtcattt ctgtgcctta gccttctgat
     1981 gctatgcggc atatttggag gagtatctgc gttgactgtg gcaatcacga aaagaatgcc
     2041 tatccgctta gaacaaagaa ggaagtacct attcccgatc ccatttatcg gactcttgat
     2101 attcagtatc gcaaggatag aacccgattt aattggcatt tcagaccagc tcggctgggt
     2161 acttctaatt gcgccagggc ccctatacat ccacctctca tatgcccccc gatggaggct
     2221 actggaacga ctatcgcgag gcttggagtt agatgaaaca cctatggaag tcggcaaaga
     2281 tagggactta gacaccgacc taatcgaagc agtagatgaa atccatggcg aagagtagat
     2341 caaatcagtc caatggttcg acccgctttc tcaaagactc ggagaacctc atcgagatca
     2401 tcacgagtta ggcccgctga catctgagta cgaacacgcg ccttatctct ggcaaccata
     2461 gggaatacta tcgcaccaac tatcacgcca gcatcacgca ttgctgcaga caatgatttt
     2521 gcagtagtgg actcgccaca cattactgga ataattggag ttgtggaaac gccagtatcg
     2581 aaaccaagtg aatctagttc cccccggaag taatcggtat taccccataa tcgctcaacg
     2641 tgctccggct catccatgat aacctccact gccgccttct gagccgctgc gacaccaggt
     2701 ggttggctcc ctgatagaag ccaagaacgg ctatgattca gagcgtgttc acgcgtctga
     2761 gcagtgcctg cgagaatccc tccttggacc cccatggctt tcgaatatga accgacctcg
     2821 aaatccacac gtccttgaag tccgaaatga gcgactatgc cgcgaccatc cccgaggact
     2881 ccttctccat gacaatcatc aacgaacacc attgcatcgt gctcctcagc gaccgcagta
     2941 atctcatcca gtggagcaat gtcaccatcc atgctgaata caccatccgt gataatgagc
     3001 ttgcgatcaa cccccttatt ctccctaagg atacgttcga gggcttcgac atcgttatgt
     3061 ggataaactg cgcgttgtgc cttcgtcaaa cgaactccat caatgatgga cccatgattc
     3121 aattcgtcag aaataatgag gtcgtccttt cccttgacaa gtgttggaat caagccgacg
     3181 ttagcagtat agcctgcgga ataaatcaaa gcggcttcaa cacctttgaa atccgccgca
     3241 actcgctcag cctccaaatg gatatccatg gtacctgcga tagccctcac tgatccgcta
     3301 ccagccccat acttacgtgt agcttcgatg gatgcctcga caaccttagg atgtgtgcta
     3361 agattcaggt aattgttggc agagagcatg attgactcct ttccgtcgat tgtaacacga
     3421 ggagcgttag aggactcaag gattggtgga tcccagttga gaccgctagc aaccagttcc
     3481 tcgtaccgct ctcgcatcca atcaaggtcc ttcgccataa cgagggcagg cataggattg
     3541 acatgatggt tccgacgacg gagtattgat gcagaatagc ggcaggtgag gctcatgcca
     3601 ccgcatccag aggccatcat ccttggaatc gcacaagatg gcggagtacc gcaaccggcc
     3661 tgctcttgca acacttgcac acactatgtg gagaatgaaa gccgactctc ccccacctct
     3721 atcgccgtca gagacggaga tgacttacat ctcttcgatg ttacacgaga cctcgcaagg
     3781 caactcctct tcattccaga agaatcacga caagtcacag atgtgtggct gactcatggc
     3841 catctcggac acatcgacgg cttggggctg ttcggaaaag aagccatggg agcatcggaa
     3901 attcggctgc atgtatccaa atccatgctt aaattgattc gaaacacacc acgatggaat
     3961 tcaatgctgg aacagggcgt attcctgccg attccattcg tttcaaatga aacttcgaag
     4021 tgttcatcca ccctctcaat caagcctatt tccgtccccc accgtgatga attgaccgat
     4081 acacatgcat tcctcatcca agggtcaaag cgaactctgc tccatcttcc cgaccatgac
     4141 cgatgggaca ctacacttac tcatgttggc atgaaatcta tacgcgattg gttcgaacaa
     4201 atccaagcag atgttgttct ccttgatggc acattttgga gcgatggaga gatctctcga
     4261 cagacgaatg tccctcatcc accgatatct gagaccatct ccctccttgg cccccgagaa
     4321 acccacgata tcgacatccg tttcatccac ttcaaccaca cgaaccctgt aatctcagga
     4381 ggcgatgagt caattgattt agacctcaaa ggatgggcat tagctagtga aggagaggtt
     4441 atcgaactct tcacggatac aacggaatga acaaatgtag gaggattgcc gcaggggtat
     4501 ggaactccat ggcgaggtca gttctggcct aggacgcgcc cacgtgttca tggctcagaa
     4561 ccactatcag gatcagttca gaggcattct aggaggaact gcttggccag gcactctcaa
     4621 catcaaggtg tcggacgagg acctcactca atatctcgca ctacgtcaga aagcgggcat
     4681 cgatacactt gacgccacgg atgaacggcg taataaggct caagaaattg atacatcgaa
     4741 tatcgaagcg ttacgcatcc gcggattcct ccgtgaaggc cgttcattcg gcggcgcgac
     4801 ggcattcaag gcgcagatta gaacggaaga tctagatcat gttgaatgtg caatcctcat
     4861 tcctgaccta acacggcatg tcgaggtcat cgaagttatc gcagaggtat tcctacgaga
     4921 gacccttgac ctcacggatg gaaacagagt atcactcaat ctcgtctgac tggaattcca
     4981 tcccttgaat ccaacctctc tgaagcatga gtttcatctc cttccgtgca atctcttgcc
     5041 acctctcgtg gagcctctga tcggtcccac ctggaggatt ggaccattcg gaaattgact
     5101 ccaagggcat cgtgtcgagg tcaggaaggg ccggatgttg aatcgaccag agcatgagcc
     5161 aatctgaagg acttcgtccg aaatctatgc tgtctgatgg acgatgaagt gctcgaatca
     5221 catcagataa atcgagattt tcggttgcca gaccgtgtag tgtagaagca atcctacgca
     5281 cttgattcca aaggaaactc tcggcctcga ttcgaaagcc aaccacacga ccgttgacat
     5341 ccacccaggg agtgcaacga tgaacagtac gaaccgttgt tcgaccctcc tccaccctac
     5401 agaagttcgt gaaatcatga ccgccttcga atacacgaca ccagcgagcg agacgttcgg
     5461 gagacatatc tacaggccag ttcagaagtg cttgcaaacg gtagaaatag acgcggcgac
     5521 gggcgaggcg aacggtgaca tcatcggata ctgcgtaggc tgaccagacg atgatatcgt
     5581 cctccaatct atcgttaagt gccctcaata agctatctgg acctatgcta tcccaacgag
     5641 atagagggag gtcgaaagag gcgagattca tacgtacatg gacgcctgca tccgtccttg
     5701 aagaaagcca aatatgatca tctacgccta gccacttcaa cttccgaaga gtgctttcaa
     5761 catcgccctg cgatgtacga actttgggtt gaagttgtga accgtgaaat gcatctccaa
     5821 gatagccaat acacattacc acgcgttgcg ttggctcttc ctcttcagaa tcccccagag
     5881 gcacctccac cgaatcatcg gtggacttag gcatacaagc gacctcactc gtcgctagtc
     5941 atgtactcca tagcctcttc agcggaactg aaaccgagac cgaggagaga gaactctatt
     6001 gcggtccgaa catacttacg agcgaagtcg tggctgcgat cgaagtttgt cttgacatcg
     6061 attgaatcta tcagtaatcg tgccgcctca tagagatgga atgagacatc attctcctcg
     6121 cttgcctgac cgagttcgtg aagtcgttgg aactcacgaa ttgccatcgg gacacggtcg
     6181 aattcaatga gtgcattagc gaatgctgcg agatattctg gattatctgg ttccatcttt
     6241 gttgcctttt tcaagaaaga ttgtatctga ccctcgttga atcgatcatt gcccgaatcg
     6301 tcgatattac cgttttcctg aatctcaaac atagcggcct cagcccagcc gtgaaaacca
     6361 accggactgt ctgaatgatt atccattaca gtttgaaaga tatccatcgc accgaggaaa
     6421 tctcctccgg taatgcattg tgctgccttg gtaagaagtt cgtcgtcaac cattgggggg
     6481 tccaccagtt gctgtgtcga ggtgatggtt cttcaacggt gcgggtcgaa ctacaccata
     6541 tagagaggcg aaatcattca ggaatagact cagtggacga tgctacttca ggattagagt
     6601 ctgctggggc accatctact ggtgcacccg gacgagtgcg gagttcattg actagggcgt
     6661 agacgtccat cggacggcgg ataccataga agcagtcctc tgggttgagg tcgactgtct
     6721 tcctagttcg ttgtaacctc atcatgaaga tgaagaaacg gaataaacga actacgaggt
     6781 tgcttgtttc ctttgtagcg gcgtcggtaa catcggtaac tgcacctgca ccgaatgaca
     6841 tcgaatcctc cttcagacca aggccagatg ccgtgataac gtggaggcta ccgtagccaa
     6901 gaattcgccc gataaggcta cgctcgacct tcaggttctc gatcttagag agactgatgg
     6961 cgtgactatt agaatcaatg aacttcaaga agtccttctt caggtagacc tgcttatccg
     7021 tgataacgta ggtgaatgca cgctgataca acaccgtgag aatgaacatc acaccagcat
     7081 atccgccacc aaaaatcagg tagaagctgt ccttccactc tggaaggaat ccgctatctt
     7141 ggaggccaat gaacccggag atgaaactgt ctgtaagaac tgtctcaatg aaaaatacac
     7201 caggcgtgat tgaaatcaca agcagggaca ccgtgtagag cccccctgat gtcgagaaat
     7261 tgacgaagcg gttgatccaa gtgagaatca tcatcatgac aaagaagcca gcgatgccag
     7321 tcgaaacaag caattcgaag agattcaaga ggaagttcag accgccttcg ccctctggtg
     7381 cttcgtaacc aatcccgaat aggaggtgga ctgccattac aaacacaatc agaaggtagc
     7441 gagggaacat agagaggacg attggacccg aacggtagta tggctcctca taaggagaca
     7501 tttcgggaac tgcatctctt gctgcttcaa cgtctaactt ctcacgaaat gtatccatct
     7561 gtccacccat caaatcaacc tcaactacag tttggacggg ttcgtatata attacattca
     7621 acaatctgcg tcaatgtaac aatccccacg aatgttctgc attcccacgg atccacccat
     7681 atgtctccgc agtacggacc tcgacttcat cacaaatcgc gatctcctct accacgagcg
     7741 ggtactcatt gtaggtgaaa tgagaggtca gacctgccct tgtggtttga tcaaaggtcc
     7801 aatgggctcg gcttgaagca cggagaattg tgctaatctg agttcggcca ttccaaaccc
     7861 taaccttgaa tccgggcaat ggtgaaccct gatcatctac aggcccaccc tcgcccggat
     7921 gaagaacttc cacctcacaa cgctcgaatc gctcggtacg ctgccgcctt gcatcgtgaa
     7981 ataagcccgc agtccgaatc gggacacgat ggcggtcacg acgacgccat gcagtagaat
     8041 cattcgaggt catcgaaagt gaaagatgtg gaaaaaacca gtcgaaatac gaaccgtcat
     8101 cgaagtgcag gaaaccccag aaccaaggca cagaaggagc ctggacaatc accttctgaa
     8161 aataggctgt cccctcgacc tcttcgtcac caatacggcc cttcgctttc gtaccgtgga
     8221 tacgaagaat gtcataaccc atcgtacctg tgaaaacatt gttcgaacga gtgacgcctg
     8281 aaatcgcggg attccaagga gtcatttcaa gatcgaaaga tgcaggagct cctgccgcaa
     8341 catgctcctc atccgagcgg agtttgagcc agaatgagga cgcatcaggc tggaggccca
     8401 tagacagatc atcttctgtc aatgggacga cagcgccccc gagggagtcc gaaggccaag
     8461 aagggtggcg atggtcgatt gccgccattc ggcatttccg taataccagc ggctcataca
     8521 tgcggtcgcc atcataccac caagcacaaa ccatcccacc gagaacatgc cccccatgct
     8581 catcggtatg gaatcgttca ccaccccatg gaataccgct gacatcaatc gatgctgtgt
     8641 ccttggtaga ccatagcacc atcaattggc gggaacgctc ggggtgatcc ttgcagggaa
     8701 gtaccacaag ccaccaccac cattgccatg tgagtcgatg catggtgggc agaaaatcga
     8761 gccgccagag agtatcgagg tcaccctcaa agcgctccat ggcacgacac ggaataaacg
     8821 gctgatgaac gctggccctc aatcaatctc tctacgaccg aggaaagatt gcccaagacc
     8881 gaccatcaag agcacgtata ctacaagcac accggctgcc acaagtagtg ccactgctgg
     8941 tgattcattg gtcgttggtg cgttccagaa caccgagaag atgtcggctg aatcatagta
     9001 gccttcaccg atgatgtcat agtactgcga atccggccaa gcgatcaatg cagcagcgtt
     9061 caccatttcg ataccccaat gtgatactga aagccaagcg attcggctct gacctccact
     9121 aagcagagag aagaaggcca tgatgaactc ccagaggccc atcacaatcg cgatataggc
     9181 accaaaacgc ttggagagaa caccaaacat tgcgaatgtt gttgaatagg caaggaggac
     9241 aagggcggat gcgataccta caatcaacca gaccgtcaaa tcttggaatc tgaacagtga
     9301 ttcagatgga ccgaggaaac cagtgacgat gcccactgtc actgcgaggc cgagcatata
     9361 ggggccagcg aggagcatga acccaaggat acgatagaga aagaactctg ctcgatgaat
     9421 cggcttgccg acaagatagt acatcgttcc tgaagccatc tcatcacgta ccaaaccagt
     9481 agcgaggaac ataggaatga atatcccgag gatgaacaag aatgctactt tgcttacagc
     9541 aagaatgaat ccacgatgcg cgctctctaa tgtgaactcc gattcagagg gatcctcatc
     9601 aacaccccaa tctgcttcaa tccgtatcag gttaccatct tcatcgaaaa taagctctac
     9661 atcgcaatcg atgccgttgc cgttggtatc ctgcatatca gagtaccaat agtactctgt
     9721 ttggtcgggt atggatgtac tttcgtcttg gtaatttcta caatccccat cgtcgtcgta
     9781 accttggctc acatttcctg agtctatgtc gagattaatc ccgtcttcat caatgtaaat
     9841 cgaaggatcg tgaggttcaa ccactgtatc cgactgcccc accatctcgc cccatgaaag
     9901 ccaaccttga tcggactttg caagtgttcc attgacagtg accagaccat agaaacggat
     9961 ttcattatca tccgtcatac atgaatcgcc gtatccaaga ccataggtat actcctcctc
    10021 ccaagagcag ctccgttgtt cattgatagc gatgaagcga tcatcatcgg agttgttagc
    10081 aaaccaagta tattcttcga ttatcccatt accattgtag gtatagttac ccgtaacatt
    10141 tctatcatcc caatccaacc aatctacatc tacgaatcgt cctgaaccag gaaattcctt
    10201 tgcatcccaa tcggacgttc catactggtt ctcttgcccc tgagggtaac cgtcaccatc
    10261 ccagtcctcg gaatccccgt catcatcaat tggctcgatt ccagttgcca tttcctgtgc
    10321 gtaggtcgca aggagcaaag tcattacaag aacaccaact gctccaataa cccaagttga
    10381 agaacggacg cggagttgcc ttgaggtgaa ttcgatgata gcagaggcct tacgatccaa
    10441 gccagtccat acagtatcga gaactcttgg aggagggagt gagggctttg aaggacctga
    10501 aggggcaact ggggatttca cgagagatgt tgttacagac gactccgatg aatcaccata
    10561 cgcgcggctc ttttctgtca tgaccgaccc tccgttaggt aagcgagaag gctctcgaga
    10621 ttgtcatctg gattcgtaat cgcgctaaca cggatgtttg aagacctaat cagagagggt
    10681 aatgctgaat ggacagaatt gagatcgttg gtttggagct ccaactcacc cggcaaaggg
    10741 aaacggacac catggatcgc ctccagagga agtacatggg cagcaagatg acgaggctcg
    10801 tcagtacgca acagaattcg atgagggtgc ttgtccagaa gtgacctgat tttgtgtaag
    10861 ttaccaagag ctaaaagacg actgttatga aggataacaa tttgttcagt gatacgctca
    10921 atctccgaca agatatggct tgatacgatt acagtcttac ccatcgaacc aatttcacgg
    10981 atgacattca taatcgtagt tcgtgccact gggtcgcatc cttgtagtgg ttcgtcgagg
    11041 acaataagat cgggatcatt gactagagca tgagcaattt tgacacgctg tcgcatacct
    11101 ttgctatact tcccaatctg cttgtgtgca acatcggaaa gattcacgaa gtcgaggacg
    11161 tgatctgctc gggctcccgc ctcgtcgcga gtgaaaccgt agagtcgagc gagagttgca
    11221 acgaattcgt gaccagtcat ccaatcgtag agtttctcac cctcggagac atacccgatt
    11281 cgagagtatg gggcaggatt acgccaagga tctacaccaa aaagacgtac agaaccttta
    11341 ctcggtttga gacgacccac gaggagtttg aacagtgtac tcttgccagc cccattttga
    11401 ccaagaatac cagtgacacc tccacctatc gcgaggctga catcgtttag gccgatgact
    11461 tgcccgtaga attttgtaac atgatcgagc atcactgctg gtacggtcgc atcgacgcga
    11521 atggactgca cagccggttg accaacctga tcgaaatcag gcatcattcc cgcgtcacct
    11581 ccagactatt cacacgagca gataagacgt atagcgatac agcattgata gcgagtagag
    11641 acacgactga gaaagcaaca gggtggtcgt aacgtaaatc gatacccatg agatattgtc
    11701 ctagatgtgc aagattatcg tatggactga ttagatacac tatgctctga tcaaacaaat
    11761 tatccacgag gaaagcaagg agttttgttc caagaataat cgataggaat ccaactgcag
    11821 ggaagaactt ccccttggat actgaagaca aggccatacc aattgaggtg taagtaataa
    11881 tcaacagaaa ggcaatgccc aaaccggaga tgaatagtgg gaacgagtcg aatatgtacc
    11941 cccaccctcg cccttcaaca acaatcgcta gagagtaaaa cgaaacgtaa ctgatcagaa
    12001 ttacgccacc aaggatacta gccacagata ggtacttcat cgcagcataa tcgattcgat
    12061 tgattggacg ggagaagtag attgcagaag tgccatgagc tcgatcttct gagatcatgc
    12121 caccgattac gagagctgta agtaggggcc agaatagggc gtttcgcggg aagaaaccta
    12181 gaatcttggt atatatattg acgcgattaa gcccgaaacc acgcatgata gttggatctc
    12241 caatcaggga tgcaagtaac aggaagccaa gagccgccat tga
//
LOCUS       DUKB01000170            4927 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_147878, whole genome shotgun sequence.
ACCESSION   DUKB01000170 DUKB01000000
VERSION     DUKB01000170.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4927)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4927)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4927
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_147878"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1613
                     /gene="glmS"
                     /locus_tag="HA345_05755"
     CDS             <1..1613
                     /gene="glmS"
                     /locus_tag="HA345_05755"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:NF001484.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HIH84894.1"
                     /translation="TRWATHGGVTEANAHPHMSMDQSIAVVHNGIIENARNLRQRLTE
                     TGIEFRSETDTEVIVHLISREIEAGRAPLEAVRRTLALLRGTWGIAVMIHGYDEVICA
                     RNGSPLVIGIGDGEMYISSDPHPLSSHTSRVIFLDDGDIAIISRSGVETHRIDGPADH
                     MVVTIEDQWGDSDLGDYPHFMLKEIHEQPEAIRQCISGRTLVSDGNARLGGLSLSAKR
                     LRSLPHVRLIGCGTALYAAQVGRLAIEHLARVPSFAHVASEFRNNDPVIDPKAVYFAV
                     SQSGETADTLAAVKAIQTKDAEVMGVINVVASSIARQCGQGVYIHSGPEQAVASTKAF
                     TNMVAALNLFALQIGRARDMPRTTGRTMVKALRALPDQVQSVIEDKAPYSAAVELLKD
                     AKSVLFLGRGFSAPVAREGALKLMEIAYIPCLAYPAGEMKHGPIALLEEGSPVVVIAP
                     DDVHRDKTISNIEECKARGARIILIHTEGDVIAEHGDVCFTIPSTEESLSPMLSVIPL
                     QLLAYYTGLALDRDVDRPRNLAKSVTVE"
     gene            complement(1617..2348)
                     /locus_tag="HA345_05760"
     CDS             complement(1617..2348)
                     /locus_tag="HA345_05760"
                     /inference="COORDINATES: protein motif:HMM:NF018455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84895.1"
                     /translation="MSDASNRIPTYVNGLDQGMQGGIPQGHIVLLAGASGSMKSSLGF
                     SLLYNAVREGRASGIYVTLEQGKKSLGGHMANMGMDVDDANVRSSIAIIDLADLRVQL
                     DARGIDKEVDWMGQLIKQLTNYRESIGFDILVFDSLGAFFTLTKMDNPRDEIFRLFEA
                     VRRLGLTAFFICEMMGEGKNQFGEFGIEDYLSDGVIHLTMERTGDSIERKLAVVKMRH
                     TDHVLGYYPWTWDSGTQHFSIDRRF"
     gene            2410..3051
                     /locus_tag="HA345_05765"
     CDS             2410..3051
                     /locus_tag="HA345_05765"
                     /inference="COORDINATES: protein motif:HMM:NF014591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Maf-like protein"
                     /protein_id="HIH84896.1"
                     /translation="MAKIVRLASSSSRRRQLLLERYTGIALDFGGLVGEELPPPNMCS
                     VHDQVDFILNQKIERARLEHHLISSKEEAAESLASANLWIVADTLVEDPHDSFLSLGQ
                     PSDTIAALHMLTNLSGRRHLVWSGTAVLDFSAADIVAHRSIESATVEFNQLSEDEIAE
                     LIESNSWKGKAGAYDLAGPAGAHAHLISGYEVTVLGFSHASTKFLDAILSNNS"
     gene            complement(3080..3526)
                     /locus_tag="HA345_05770"
     CDS             complement(3080..3526)
                     /locus_tag="HA345_05770"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013490.1,HMM:NF014762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HIH84897.1"
                     /translation="MSDGEAADRLEGLRSAHARDQNSRSERISVRIEDFLEVILELEN
                     RDGAARVSDIANHLSVSRPTVAKMLARMTEDGWLHREPYRAVNLSPKGREHAYWMRKR
                     HGVLVRFLKHLGTDDETAHFETEGIEHHLSESTVSAIAKLCERLEK"
     gene            complement(3536..4540)
                     /locus_tag="HA345_05775"
     CDS             complement(3536..4540)
                     /locus_tag="HA345_05775"
                     /inference="COORDINATES: protein motif:HMM:NF027681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HIH84898.1"
                     /translation="MRVLVTGGAGFLGSHLCESLLVDFHEVCAIDDMFRGRKKNLESC
                     KSSAAEIGVPFHLVMKDGAASESYETALKRLNGSVDVVYHLAAINGTRWFNERPDLVA
                     RVNLSTLQAALDFAVTNGARFVFTSSPEAFGDQHEMPIASNSDSQFRSSAIHQRHSYG
                     ASKYLGELLIQHAVKTHSLDARIVRPFNSYGPRLPGDSHGQVVSMMLERCLAEEPIEI
                     HGTGEQTRCFTWVEDMIQGIRFAGELDQGLDGSKLTGRAFNLGSTEETSIRKLAEVCR
                     TVTGTGISPIEVEGHPGDSERRVPDCTEARDALGWEANLPILDGIQRTWAWMKARHEA
                     "
     gene            complement(4580..>4927)
                     /locus_tag="HA345_05780"
     CDS             complement(4580..>4927)
                     /locus_tag="HA345_05780"
                     /inference="COORDINATES: protein motif:HMM:NF014091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HIH84899.1"
                     /translation="TYLGYVNRDTGVIEDPGHPLDGIAIENSILIYPKGSGSTVAPYV
                     LMGLIYTGKGPKAIVNRDVCPLSMPAASLLGIPYATGFNDDPCMEVNTGDRVRMSLQD
                     GIVHLEILERRTS"
BASE COUNT         1191 a         1266 c         1193 g         1277 t
ORIGIN      
        1 atactagatg ggcaacacat ggaggtgtca ccgaagcgaa tgcacatcca catatgtcga
       61 tggatcagag cattgcggtg gtccataatg gaatcattga gaatgcaaga aatctccgtc
      121 aacgcctaac cgaaacagga attgaatttc gatctgagac cgatacagag gtcatcgtgc
      181 acctcatttc acgcgagatc gaagcaggaa gggcaccact tgaagcggtt cgtcgaaccc
      241 ttgcactcct ccgtggaact tggggaattg ctgtgatgat acatggatac gacgaggtta
      301 tttgtgcacg aaatggctcc ccactagtca ttggtatcgg tgatggagag atgtatatct
      361 ccagtgaccc ccatccattg agttctcaca cctcacgagt catctttcta gatgatgggg
      421 acatagctat catttcacga tcaggtgttg aaacacatcg catcgacggt ccggcagatc
      481 acatggttgt gaccatcgaa gatcaatggg gtgattcaga tttgggagat taccctcatt
      541 ttatgctcaa ggaaatccat gagcaacctg aagcgattcg ccagtgcata tccggacgca
      601 ccctcgtcag tgatggcaac gcacgcctag ggggcctctc gttgagtgca aagcgtctac
      661 gttcgcttcc tcatgtccgt ttgattggtt gtggcaccgc actatatgct gcgcaagtgg
      721 ggcgattagc aatcgaacat cttgctcgag ttccctcctt tgctcatgta gcgagtgagt
      781 tcagaaacaa tgaccctgtc atcgatccta aggctgtata ttttgcagtt agtcaatcgg
      841 gggagaccgc tgatacgctt gctgcagtca aggccatcca aaccaaggat gccgaggtaa
      901 tgggcgtgat caatgtcgtt gcctcctcaa tcgcgcgcca atgtggtcag ggtgtttaca
      961 tccattcggg acccgagcag gcggtggcat ctaccaaggc attcacgaac atggtcgccg
     1021 ccctcaatct atttgccctt cagattggtc gagcacgcga catgccacgt actacaggtc
     1081 gtacgatggt gaaagctctc cgtgctttgc ccgatcaggt tcaatccgtc attgaggata
     1141 aggcacctta ctccgccgcg gtggaacttc tgaaggatgc gaaatcagtc cttttcctag
     1201 ggcgtggttt ctctgcccca gttgcacgtg agggtgctct caaattgatg gagattgctt
     1261 acattccctg tcttgcatat cccgctggcg agatgaagca tggaccaatt gctctccttg
     1321 aggagggtag tccagtcgtc gtaatcgctc cggatgatgt ccatcgagac aagacgattt
     1381 cgaatatcga ggaatgtaag gcgcgtgggg ctcgtatcat actcattcat actgagggtg
     1441 atgtgattgc agagcatggg gatgtttgct tcacaattcc ttctaccgag gaatcgctta
     1501 gtccgatgtt aagcgtcata cctctccaat tactggctta ctatacgggt ctagctctag
     1561 accgtgatgt cgatcgaccg aggaaccttg caaagtccgt cacagtcgag tgaatttcag
     1621 aatctacgat caattgagaa atgttgcgtc ccagagtccc aggtccaagg gtaataccca
     1681 agcacatgat cggtgtgacg catcttcaca acagctagtt tgcgttcgat tgaatcacca
     1741 gtacgttcca tagtaaggtg aattacgcca tcagagagat agtcctcaat accgaattcg
     1801 ccgaactgat tcttaccttc gcccatcatt tcgcagatga agaaagccgt taggccaaga
     1861 cgtcgtactg cctcaaagag tcggaagatt tcatcgcggg ggttatccat ttttgtcagt
     1921 gtgaagaagg ctccgaggga atcgaaaacg aggatatcga atccaatcga ttcacgatag
     1981 ttggtcaatt gcttgatgag ttgccccatc caatccactt ccttgtcgat tcctctagcg
     2041 tcgagttgga cacggaggtc agctaggtcg atgatcgcga ttgatgaacg gacattcgca
     2101 tcgtcgacat ccatccccat gttggccata tggcctccga gcgatttctt cccctgctca
     2161 agagtaacgt aaattccact tgcacgtcct tcgcggacag cgttgtagag caaggagaat
     2221 ccgaggctgg acttcattga tccactggca ccagcaagga gcacaatgtg gccttgcggg
     2281 atgccgcctt gcatcccttg atcaagcccg ttcacataag tcggaatccg gttgcttgcg
     2341 tcactcatct ctgcacccga tggtaaggaa ggacgatgac aacataaacg caactgacaa
     2401 ttgtcgttca tggccaagat agtccggctc gcctcctcct cctcccgccg aagacaatta
     2461 ttgttggaaa gatacacagg tattgcccta gatttcggtg gcctcgtcgg agaagagttg
     2521 ccaccgccta acatgtgcag tgtccacgat caggtagatt tcatccttaa tcagaagatc
     2581 gaacgtgctc gccttgaaca tcatctcatc agttccaaag aagaagcggc tgaatcattg
     2641 gcctcagcga atctttggat agttgcagac accttggtag aggatcctca cgattcattc
     2701 ctttctcttg gccaaccaag cgatacaatc gcggctctcc atatgctcac caacctttct
     2761 gggaggcgcc atttggtgtg gtcgggaacc gcagtcctcg atttctcagc tgctgatata
     2821 gtcgcccatc gttccattga gagtgcgacg gtagagttca atcaactctc tgaagatgag
     2881 attgccgaac tcatcgaatc gaattcatgg aagggaaagg ctggtgctta cgacttggca
     2941 ggccctgcag gtgctcatgc tcatctcata tccggatacg aggtcaccgt gctcggattt
     3001 tcacatgcat caactaaatt tctagacgcc attttgagta acaattctta atcgtagatt
     3061 actggaatcc gttcgctgat tatttctcaa ggcgctcaca tagtttggca attgcagaga
     3121 cggttgattc actgagatga tgttcgattc cttcagtttc gaaatgagcg gtttcatcgt
     3181 cagtaccaag gtgcttcaag aatcgcacta gcactccatg tcgcttgcgc atccagtatg
     3241 catgttctct ccccttagga ctcaggttga ctgcacggta aggttccctg tgtagccaac
     3301 catcttcggt catcctggcg agcattttcg ccacagttgg ccgggataca gagagatgat
     3361 ttgcaatgtc agagacccgc gccgccccat ctcgattttc aagttcgagg atgacttcta
     3421 gaaaatcttc aatccgtaca ctaatcctct cgcttcggga attctgatcc ctagcatgtg
     3481 cagatcgtag tccttccaat cgatcagcgg cttcaccatc agacaacaga tcacctcatg
     3541 cctcatgtcg tgctttcatc caagcccaag ttctctgaat tccatctaat atgggcaggt
     3601 tcgcctccca tccgagggcg tccctagctt cggtacaatc tgggactcgc cgttcagaat
     3661 cacctggatg cccttcgact tcaattggtg aaattccagt tcctgtgaca gttcggcata
     3721 cctctgctag tttacgtata ctggtctctt cagtggatcc aagattgaat gctcggccag
     3781 tgagttttga tccgtctaac ccttggtcga gttctccagc gaatcggatt ccttgaatca
     3841 tgtcctctac ccatgtgaaa caacgggtct gctcccctgt tccatggatt tctatgggct
     3901 cttctgcgag acaacgttcc aacatcatgg acacgacctg cccatgagag tccccaggaa
     3961 gccgtggacc ataggaattg aacgggcgta ctatacgggc atctagtgaa tgtgttttca
     4021 cagcgtgttg aatcaataat tcaccgagat actttgaggc gccgtaggaa tgccgttgat
     4081 ggatagcact ggatctgaac tgcgaatctg aattagatgc aatgggcatc tcatgctggt
     4141 ctccaaatgc ttctggactg ctcgtgaaaa cgaatcgtgc accattggtc acggcaaagt
     4201 cgagtgcagc ctgcaaagtc gagagattga ctctggctac gagatcgggg cgctcgttga
     4261 accagcgtgt tccattaatc gccgcaaggt ggtaaactac atcgacactt ccattcagtc
     4321 gcttcaatgc agtttcgtag gactcggatg cagccccatc cttcattact agatggaacg
     4381 gaactccaat ctctgcggca gatgatttac aggactcaag attcttcttc cgtcctctga
     4441 acatgtcgtc gatagcgcat acctcgtgaa aatcaactag tagcgactca caaaggtgac
     4501 ttccaaggaa tcctgcacct ccagtgacga gaacgcgcat acccctccga tggggtcacc
     4561 ctgtatgggc ttcaccccat catgatgttc tacgttcaag gatttcgaga tgaactattc
     4621 cgtcttggag actcattctg acacggtctc ctgtgttcac ttccatgcat gggtcgtcat
     4681 tgaatccagt agcataggga attccgagca ggcttgctgc tggcattgag agtggacata
     4741 cgtctcgatt tacaatggct ttcgggccct ttccagtata tatcaacccc atgagtacat
     4801 agggagcaac agtggacccc gaaccctttg gatagattag aatcgagttt tcaatagcaa
     4861 tcccatctag agggtgtccc ggatcttcaa ttacacctgt gtcacgattg acatagccaa
     4921 gataggt
//
LOCUS       DUKB01000171            4864 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_242004, whole genome shotgun sequence.
ACCESSION   DUKB01000171 DUKB01000000
VERSION     DUKB01000171.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4864)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4864)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4864
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_242004"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..729
                     /locus_tag="HA345_05785"
     CDS             <1..729
                     /locus_tag="HA345_05785"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014798.1,HMM:NF014799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HIH84900.1"
                     /translation="LRWRWGADVPLTVRIPLGAKTRSGPFHANMIESWFTNDPGLVIL
                     FPSCPQDAYDLLVEAAALPDPVLFLEHIGMYGLRGGKTGWGDSINQIVDTKTVLSRLD
                     AGDGSKEIGKARIVRGGSDVTIVTWGAMVHVARHAAERVAAEGIETEIIDLRTLQPFD
                     ADTCVDSVQRTGRLLVLQEAQWTGGFAHTISSRIQEEAFWSLEAPPMVVGALDTPVPF
                     SPPLEDYTIPDVDLVARHLRAIIG"
     gene            783..1883
                     /locus_tag="HA345_05790"
     CDS             783..1883
                     /locus_tag="HA345_05790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HIH84901.1"
                     /translation="MDEANAESNRPKMATYTVAFTLGILGLMMATESFWLNIGILLLS
                     TGLLILSADMFVNAVKIVARRFGMSELIIGLTIVSIGTSMPEILVGVSSSLEVAANGC
                     TPEACASDFALGNIYGSVLVQISLVLGIVVLIHPLEVRPDWLARDGLLMFLAVIVLTM
                     LILIDAKLDRMEGLILCLVYLMYLLNLIHQRDNIREDELMLTGSEVEITPVEMHDYAL
                     LASVVIGLSLAIWSATVLVSSATTIAEAMSIPPSFIGATVTAIGTSLPELAVALTAAR
                     HSKGVAIGTLIGSNITDPLLSIGITALVHPVTIGSSDIFFYLIIPATIITTGLSLLFM
                     YTDFKFQRWEGGVLVTCYVIFVGLLIAASNII"
     gene            1937..3085
                     /locus_tag="HA345_05795"
     CDS             1937..3085
                     /locus_tag="HA345_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012933137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HIH84902.1"
                     /translation="MVDLTLSEEQEMLKELAHEFARDSIRPMAEHWDENSEFPMEAIA
                     EAHELGLMNLHIPEEYGGMGFGCLTEAVVQEKLAWGDPGFATAAYSNGLTAAPIITGG
                     TEEQKQKYLGWLVEKPSIAAYAVTEPGAGSDVAAIQSTAVRDGDDYILNGNKMWITGA
                     GKADWYFVLAYTDKDAGYKGMSGFIVEADWDGVSLGKKENNMGQRASDTRAVNFENVR
                     VPVANLVGGVEGSGWFNAMAAFDVSRPSVAAHATGISQAAYEHALQYADERVTFGKKL
                     HQHQTIQFMLADMKTDIEAARLLTWKAAWMMDNGERNTEFAAHAKRFAADAAMRITTD
                     AVQVFGGYGYSEEYPVARLMRAAKVMQIYEGSSQVQRMIIGREIVRGL"
     gene            3095..3670
                     /locus_tag="HA345_05800"
     CDS             3095..3670
                     /locus_tag="HA345_05800"
                     /inference="COORDINATES: protein motif:HMM:NF024214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HIH84903.1"
                     /translation="MRKAHPLRCLILAAGASRRLGRPKALIEVEGVSVVRILVNRLQD
                     VGLNPVIVTRQELMLDIAQICQDSTVVVNPTPDLGRTGTIRCGILHLISQRGGERPFR
                     LLLVPVDRPGFSIETARTLSEQNHCCAPSKDGRGGHPILLMPEDIERILAEPDPDRPL
                     RDLVNPTYIPVEDPLLDLNLDLEEDLIGFES"
     gene            complement(3676..>4864)
                     /locus_tag="HA345_05805"
     CDS             complement(3676..>4864)
                     /locus_tag="HA345_05805"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012492.1,HMM:NF012493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH84904.1"
                     /translation="TRELAAQIGERFSAYGANLPLYHHVIFGGVSQKPQVRAVKRGID
                     ILTATPGRLLDLISQGHIDISHVEFFVLDEADRMLDMGFIRDIRKILKMLPKNRQNLL
                     FSATMPNSISELAGSFLRDAVRVEITPEEVAVDRIDQHILFVKTSDKKYLLTTLIKER
                     NVDKAIVFTRTKHGANRLVKQLGHAEIEAVAIHGNKSQGARTKALSQFKSGEISILIA
                     TDIASRGIDVDGISHVFNFDLPNIPESYVHRIGRTARAGKSGSAFGFCDDSESGYLVG
                     IQRLLGHDIPVIEDHPYHFPDAIPKPGQKPGETRKKKSRNSRAATRKQPNLRRERSDR
                     RRADEGRSPRGNNRNRSQNNRPNNQHSNSPQRRGNHGNKPGSDRSRGSGGDSNRGQRR
                     RRR"
BASE COUNT         1222 a         1198 c         1201 g         1243 t
ORIGIN      
        1 ctccgttgga gatggggtgc tgatgtcccg ttgaccgtgc gcattccact tggggcaaag
       61 acgcgatcag gtccattcca tgcgaacatg attgaatctt ggttcacaaa cgaccctggc
      121 ctcgttatcc tgttcccctc ctgtcctcaa gatgcctatg atctcctcgt tgaggcagcc
      181 gcccttcccg atccggtttt gttcctcgaa catatcggga tgtatggtct ccgtggaggg
      241 aaaaccggat ggggtgattc aatcaaccag attgtcgaca ctaagaccgt actttcccga
      301 ttggatgcag gagatggatc aaaggagatt ggtaaagcca gaattgtgcg gggcggaagc
      361 gacgtgacaa tcgtcacatg gggagctatg gttcatgttg cacgacatgc agcagagcga
      421 gttgccgcag aaggcattga aaccgagata attgatctaa ggacactaca gcccttcgat
      481 gcagatacat gtgttgactc agtgcaacga acaggacgac tactcgtcct tcaagaagca
      541 cagtggactg gtggttttgc tcacacaata tcgagtagaa tccaggaaga ggcattctgg
      601 tctctggaag caccccctat ggttgtggga gccctcgata cacctgttcc cttctccccc
      661 ccattagagg attatacgat tccagatgtc gatctcgtgg cccgacatct acgtgcaatc
      721 attggatgaa ggtgctaagc tgattccgac acgtccatta tcaacaaaca aggggaaggg
      781 gtatggacga ggctaatgct gagtctaatc ggcccaaaat ggcgacctat actgtcgcct
      841 ttacactggg cattttgggc ctgatgatgg caactgaatc attctggttg aatataggta
      901 ttctactgct ctcaaccggc ttactcatcc taagtgcgga tatgttcgtt aacgctgtga
      961 aaattgttgc tcggcgattt ggcatgtctg aactcattat cggactaacc atcgtaagta
     1021 ttggaacttc gatgccggag attcttgttg gcgtaagttc ctcactagag gtcgctgcca
     1081 acggttgtac tccagaagcc tgtgcgtctg attttgccct tggaaatatc tacggctctg
     1141 tactcgttca gattagcctc gtcctaggga ttgttgtcct gattcatccc ttagaagtcc
     1201 ggcccgattg gcttgctcgt gatggattac tcatgtttct agcagtcatc gtcttgacga
     1261 tgctgattct tatcgatgca aaactcgatc gaatggaggg attaatcctc tgcctagtgt
     1321 atctgatgta tcttctgaac ctaatccacc agagggacaa tatcagagag gatgaactca
     1381 tgctcacagg atcagaagtc gagattaccc ctgttgaaat gcacgattat gccctactag
     1441 caagtgtagt cataggactt tctctcgcaa tctggtccgc tacagttctg gtgtcgtccg
     1501 caaccactat tgcggaggcg atgtcgattc caccatcatt tatcggcgct acagttacag
     1561 ctatcggtac atcattgcct gaactcgcag ttgctctcac tgccgctaga cactcgaaag
     1621 gagtcgccat tggcacactc atcggctcaa acattaccga tccactcctt tcgatcggta
     1681 ttactgccct cgtccacccg gtcacaattg gttcttcgga cattttcttc tatctcatca
     1741 tcccggcgac aattatcaca acgggactca gcctactctt catgtatact gatttcaagt
     1801 ttcaacgatg ggaaggtggc gtccttgtca cctgctacgt aatcttcgtc gggcttctaa
     1861 tcgccgcttc aaacatcatc tagagcactc cgaacaacag ggtgaatgct aagtcggacc
     1921 gatggctgcc cgaagcatgg tcgacctcac attgtccgag gagcaggaga tgctgaagga
     1981 actcgcacac gagttcgcac gagattcaat ccgcccaatg gccgaacatt gggatgagaa
     2041 cagtgaattc ccaatggagg ctattgcaga ggcccacgaa ctaggtctga tgaatctcca
     2101 catacctgag gaatatggag ggatgggctt cggatgcctc acggaagctg tagtacaaga
     2161 gaagcttgct tggggtgatc ctggattcgc tactgcagca tattcgaatg gccttaccgc
     2221 tgcacccatc attacaggag gtactgagga acagaagcag aaatatcttg gctggttagt
     2281 tgagaagcct tcgattgctg cttatgcagt taccgaacca ggtgcaggaa gtgacgtcgc
     2341 agccatccaa agcacagcgg tccgagatgg tgatgactac atcctcaacg gaaacaaaat
     2401 gtggatcact ggtgcaggga aggcagactg gtacttcgta ctcgcctata cagacaaaga
     2461 tgcaggatac aaaggaatga gtggattcat cgtcgaagcc gattgggacg gagtatcatt
     2521 aggcaagaaa gagaacaata tgggtcaacg tgcatctgat actcgtgcag ttaatttcga
     2581 gaacgtacga gtccccgtag ccaacttggt cggtggcgtg gaaggatccg gatggttcaa
     2641 cgctatggca gcattcgacg tctcacgacc tagtgtcgct gctcacgcca caggtattag
     2701 ccaggctgcg tatgaacacg cattacaata cgcagatgag agagtcacat ttggaaagaa
     2761 gctccatcaa caccagacaa tccagttcat gcttgctgat atgaagacag atatcgaagc
     2821 agcacgccta ctcacttgga aggctgcgtg gatgatggat aatggggagc gaaacacaga
     2881 gttcgctgca cacgctaaac gattcgctgc ggatgctgca atgcgcatca ccactgatgc
     2941 agtgcaagta ttcggtggat acggctactc ggaagagtac cctgtcgctc gcctaatgcg
     3001 tgcggcaaag gtgatgcaaa tctatgaggg tagtagccaa gtccagcgga tgatcatcgg
     3061 gcgagaaatc gttcgcggac tctgaggcga ttcgatgcgt aaagcgcatc ctttgcgctg
     3121 cctgatactt gccgctggag caagccggcg gctcgggcgg cctaaggcgc tcatcgaagt
     3181 ggaaggtgtc tcagttgttc gaatattggt taatcgcctc caagacgtag gcctcaatcc
     3241 agttattgtc actcgacaag aactgatgct cgatatcgcc caaatatgtc aagattcgac
     3301 agtagtagtg aaccctaccc ctgacctcgg acgaacaggg acaattcgtt gtggcatcct
     3361 acatctgata tctcaaagag gcggagaacg tccgttccga ctactactcg tacctgtgga
     3421 ccgaccggga tttagtatcg aaacggcacg tacactctct gaacagaatc actgctgtgc
     3481 tccatcgaag gatggacggg gtggacatcc aattctctta atgcctgaag acattgagcg
     3541 gattttggca gaaccggacc cggatcgacc attgcgtgat ctagtaaatc cgacgtacat
     3601 tcccgtcgaa gatccgctac tggacctcaa tcttgacctg gaagaggatt tgattggctt
     3661 tgagtcataa ttagttcaac gacgacgacg acgttgacca cgattagagt cgccgcctga
     3721 accccttgaa cgatcagatc caggtttatt gccgtgatta cctcttcttt gaggcgaatt
     3781 ggaatgctga ttattaggac gattattttg gctacggttt cgattatttc ccctagggct
     3841 acgcccttca tccgctcgcc tccgatccga tctctcacga cgaagattcg gttgcttacg
     3901 tgttgcggct ctcgagttac gtgatttctt cttccgggtt tctcccggct tctgaccagg
     3961 ctttggaatc gcatccggga aatggtacgg atgatcctca atcactggga tatcatggcc
     4021 aagcaacctc tgaatcccca caagataacc actctctgaa tcatcacaga aaccaaaggc
     4081 tgagccactt ttacctgcac gtgccgttcg tcctatacga tgtacatagc tctcaggaat
     4141 attggggaga tcgaaattga acacatgaga tatcccatct acatcgattc ctctacttgc
     4201 gatgtcagta gcaatcaaga ttgaaatttc accacttttg aattgagaaa gagccttcgt
     4261 tcgagcacct tgactcttgt tcccatgaat tgcaactgct tcgatttcag catgcccgag
     4321 ttgtttaacc aaacgattag caccatgctt tgttcgagtg aaaacaattg ctttgtccac
     4381 attcctctcc ttgatgagag ttgtaaggag gtatttcttg tctgatgtct tgacaaatag
     4441 aatatgttga tcgattcgat caactgcaac ttcctcggga gtgatttcta ctctgactgc
     4501 atcgcgcaga aatgaccctg caagttcaga tattgaattc ggcatcgttg cactgaagag
     4561 gaggttctgc ctattcttag gaagcatttt cagaatcttt cggatatctc gaatgaaacc
     4621 catgtccaac atacggtcgg cttcatcgag tacgaaaaat tcgacatgag atatgtcgat
     4681 atgaccctgg gatattagat caagtagacg tccaggggtt gctgtcagaa tatcgattcc
     4741 acgtttaacc gccctcacct gtggcttctg gcttacaccc ccaaaaatga catgatggta
     4801 tagaggaagg ttagcaccgt aagctgagaa tcgttcgcca atctgtgcag caagttctcg
     4861 agtg
//
LOCUS       DUKB01000172            3236 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_274900, whole genome shotgun sequence.
ACCESSION   DUKB01000172 DUKB01000000
VERSION     DUKB01000172.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3236)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3236)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3236
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_274900"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            194..2827
                     /locus_tag="HA345_05810"
     CDS             194..2827
                     /locus_tag="HA345_05810"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013672.1,HMM:NF019552.1,HMM:NF028199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HIH84905.1"
                     /translation="MARDFIKGILIIALLLFPAQGGIMEWGNGTPSTYLDPASDSILG
                     VCHRAEGLHLSQTEEWTQDWTPSTSIQCAPKLPGALVLTLDDQSHLPSWWDNRMLFIE
                     HGIRLTLFIDRAWHLNDTEWEWLKTFEEDGHEIAVHTKDHASVTEHLDSGQTMDQYID
                     EQILPELELFHNQGFYPTAFAYPNGHRTSESDAALLEIFEIVRGTNRWHGNKNMPDLS
                     GMYDSQAIKGHSTDREYDPVHDLENMLEAAAQDGRAVVTYGHRLTAEENPFHTTEPDD
                     LIQLALTAQRLGMTMMTISELSTPANSEGTASMYRSVRVSNLTIADRMLENCWNLPRF
                     QEVCFDGDFPTWREDPYDENYWRFVFYSLRPLMHLLHAWETTGEDRYRERMISLLESF
                     NEGCLESHYVYRHQADKHGAAFRAMVLTEIRWSLAHRTSLSEPDRELLDGMVLSTADY
                     LMLPSNFESTYNHGFNQAAALLSISTNFPHLQGSYEWDQTARERLAHMMEFTVDEDGV
                     MMESTPYYHHYVLLLMGDVAIWSDKNSIPLPKVFHERFPKMLDYITDMARPDGSLPLI
                     GSGIPSGGLSSGGYTHWESIHPRLEYIRSGGTSGNPGVDDVMAPYIAHYPISGHTSMR
                     SSWSADTSNISHVMIDAGPYRTIHSQLDHFTLTWYKDGPVIVDPGLFSYEDGPMADYF
                     RGSSAHNVVVVDGQDQPKTYPIMGTEILQSGPSIGIQSTIKIHGCDWMRAIAIVEETS
                     LIIMDDLRCRRSHELIQTWHLDPRFTLNEGEVGVVFDSDSLQSGLVEWETNSDVSHSI
                     INGQMNPIQGWTIDAYESAIPAPVIEISTESEHLQIITVFQIEDHHQWTSDITEEEMK
                     IEIEGNVISIHIEDGLWRWDD"
     gene            complement(2844..>3236)
                     /locus_tag="HA345_05815"
     CDS             complement(2844..>3236)
                     /locus_tag="HA345_05815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015054418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HIH84906.1"
                     /translation="VVQSAAMAISNHPEVMVERRNIMGVVVPSVTGEHLTSTIDERGM
                     GLVGGSPHIDEAADGYSALIEKIVKAAEMEATLKRLLEEIEATKRRVNALEFVVIPQM
                     EEAKVFIQLRLEEMEREETFRLKRFKNK"
BASE COUNT          895 a          795 c          772 g          774 t
ORIGIN      
        1 cgatgaggac gaaatactcg gaaataatcc gctcaaggaa ctctcgttgc ccccacgcac
       61 gacgctcgac cttgagggcc ggaaccgccg aatcgtcgcc gctcatggga aatcggtcgt
      121 catggtccga tatgaccctt catgtctatc cacagaggac agtcatgaag aatcgatgcc
      181 acaaccgccc catgtggcga gggatttcat caagggcatc ctcatcatcg cccttctcct
      241 atttccagcc caaggaggca ttatggaatg ggggaacggg acaccgagca catatctcga
      301 cccagcatca gattcaattc taggagtatg tcaccgtgca gaaggattgc atttgagtca
      361 aaccgaagag tggacacagg attggacacc gagcacgagc atacagtgtg ctccgaaact
      421 acctggagca ttggtcctga ctctagatga tcaaagccac ctaccctctt ggtgggacaa
      481 cagaatgttg ttcatcgaac atggaatccg tctgacgttg ttcatcgacc gggcctggca
      541 tctgaacgat actgaatggg agtggctcaa gaccttcgag gaggatgggc acgagattgc
      601 agtccatacg aaggaccatg caagtgtgac agagcacctc gactccggcc aaaccatgga
      661 tcagtacata gacgaacaaa ttcttcccga attagaatta ttccataatc aaggatttta
      721 ccccacggca ttcgcatatc caaatggcca taggacctct gaatctgatg ccgcattgct
      781 tgagattttc gagatagtta gaggtacgaa tcgatggcat gggaacaaga atatgccgga
      841 tctttcagga atgtatgatt ctcaggcaat caagggccat tccacggacc gagagtatga
      901 ccctgttcat gacttggaga atatgttgga agcggctgca caagatggca gggctgtagt
      961 gacgtatggg catcgcctca ctgccgaaga gaacccattt cataccacgg agccggatga
     1021 tctgattcaa cttgctctaa ctgcacaacg tcttggcatg acaatgatga ctatcagtga
     1081 actttcaact ccagctaatt ccgaagggac tgcgagcatg tatcggagtg tcagagtgag
     1141 taacctcaca attgcagatc ggatgttaga gaactgttgg aacctacctc gattccaaga
     1201 agtatgcttc gatggagatt tccccacatg gagggaagat ccctatgacg aaaactactg
     1261 gcgattcgta ttctacagcc taaggccatt gatgcatctc ttgcatgctt gggagaccac
     1321 aggagaggac agataccggg aacgaatgat tagtttactc gagagtttca atgaaggatg
     1381 cttagagagc cactatgttt accgccacca ggccgacaaa catggtgctg cattccgtgc
     1441 gatggtcttg actgaaatcc gttggagcct tgcccatcgg actagcctct ctgagccaga
     1501 tagagaacta ctggatggaa tggtactctc aactgcagac tatctgatgt taccatcaaa
     1561 cttcgagtct acatacaacc atggtttcaa tcaagctgcg gcattattat caatttcaac
     1621 caacttcccc catcttcaag gaagttacga atgggatcag actgcaagag agcgtcttgc
     1681 ccacatgatg gagttcacag ttgatgaaga tggagtcatg atggagagca ctccttacta
     1741 ccaccattac gtacttctcc tgatgggaga cgtcgcaatc tggtccgata agaatagcat
     1801 cccattaccc aaggtattcc atgagagatt cccaaagatg ttggactaca tcaccgatat
     1861 ggctcgcccg gatggtagcc ttccattgat aggttcagga attccttccg gaggactctc
     1921 atctggagga tacacgcatt gggaatcgat tcatccaagg ttggaatata tccggagcgg
     1981 gggaacttca ggcaatccag gagtagacga tgtgatggcg ccgtacatcg cgcattatcc
     2041 aatctcaggc catacctcga tgcgctcatc gtggtcagcg gatacgtcca acatctcaca
     2101 tgtcatgatt gacgctggcc cataccggac catccattcc caattggacc acttcacact
     2161 cacatggtac aaggatggac cagtcatcgt cgaccctgga ctcttcagtt atgaggatgg
     2221 gccgatggct gattatttca gaggatctag tgcacacaac gtggtcgtgg tcgatggtca
     2281 ggaccaacca aagacatatc ccattatggg gactgaaatc ctgcaatcag gaccgagtat
     2341 tggtattcaa tccacaatta agatacatgg ttgcgattgg atgcgtgcta ttgccatcgt
     2401 ggaggagaca tctctgatta tcatggatga tctacggtgt agaagaagcc acgaactcat
     2461 ccagacatgg cacttagacc ctcgatttac tttgaatgag ggagaagtgg gagtcgtttt
     2521 tgattccgat agccttcaat caggattagt ggaatgggag acaaactccg atgtatctca
     2581 ttcaataatc aacggtcaga tgaatcctat ccagggttgg acaattgatg catatgaatc
     2641 tgcaattcct gccccagtca tcgaaataag cactgagagc gaacatctgc aaatcatcac
     2701 agtattccaa atagaggacc atcaccaatg gacctcagat atcacagagg aggaaatgaa
     2761 aatcgagata gaaggtaacg taatatcaat tcacatcgaa gatggattat ggcgttggga
     2821 tgactgatta ttgattcaga acatcactta ttcttgaatc tcttgagccg gaatgtctct
     2881 tcacgctcca tctcttcaag tcgaagctga atgaacacct ttgcctcctc catctgagga
     2941 attacgacga attcaagcgc attcacacga cgttttgtgg cttcaatctc ctcaagaaga
     3001 cgcttgaggg tagcttccat ctcggccgcc ttcactatct tctcgattag tgcagagtac
     3061 ccatctgcgg cctcatcgat atggggcgaa ccaccaacaa gacccatgcc acgctcgtca
     3121 atcgtactgg ttagatgctc acctgtaaca ctcggaacaa cgactcccat gatattgcgg
     3181 cgttcgacca tgacttcagg atggttcgaa attgccattg cagcactctg aacaac
//
LOCUS       DUKB01000173            6759 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_282698, whole genome shotgun sequence.
ACCESSION   DUKB01000173 DUKB01000000
VERSION     DUKB01000173.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6759)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6759)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6759
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_282698"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1049)
                     /locus_tag="HA345_05820"
     CDS             complement(<1..1049)
                     /locus_tag="HA345_05820"
                     /inference="COORDINATES: protein motif:HMM:NF013125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HIH84907.1"
                     /translation="MMAAHRVSRLAAILLTTLFVASTTTGYGLGLNPLTDIPVEADTQ
                     GRTSACVGDVCISEVLVNAFGAETDTVGPSDWTSGEWVEIHNAGTTSVDLASWTLHDH
                     YQRALPMATTNIVYPSSATSFTVAAGDYIVLARNGDGGACGMCLKNTNGVVELLTPSG
                     TLVHSVTWTLRPTEGSTLIEDASNPNGVWIESAAITPGTANGGSSSGPTYYDTGIRVR
                     EVLADPFFSDDNASWPGGEWLELENIGASTVDLLGYYIMDSSSNNISLNESHLIGFDA
                     TDSTSTHIHPGSRRVVAINSTSEYGVLNNGGDQLAVFASNGSVTDELTYPSVRVGHSK
                     IRSVNGLTWTDALFPT"
     gene            complement(1099..2856)
                     /locus_tag="HA345_05825"
     CDS             complement(1099..2856)
                     /locus_tag="HA345_05825"
                     /inference="COORDINATES: protein motif:HMM:NF014073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84908.1"
                     /translation="MLETYFADLFWLFVAFGAGAILGTFTGLIPGFHVNNVALIAVSL
                     TPIAVGIGLPLDLVAGMIVSCGTVHTFLNYIPSALVGAPDDNMALALLPGHRMLVTGQ
                     AAQGVAYSARGSQMGMIMAIPLLIVARLIFGDNPGLNWFEGSRDILPWLLLSISTFLL
                     MTETTRLPWPTFLQKITSWMRVPLPRPIRVSIPIFAFRYEREWNAIDLRFGSSSRKAG
                     IFVAMAFFLLSGMYGWAVFELPARSPVGMPSATLLMPSLAGLFGIANLIDIYVTTSEM
                     PKQEPNWELPPMKPLAVPTFLSAIVSSVMAILPGMTAAQATVVVMSIRNITGRLRDPN
                     FVPADFEYSPSSRDMSPEEMLAERRRLFMEEVGGPVDQKEDFDTNDMEVDVDEEKVEV
                     SASEDEEMTDFDTLIALAQDTPENFDEIEEVNKQDLEVIAVLSSVNTSVTVMVLGFLY
                     MVGRPRSGAALALNMIYPIDIWGTFEPPSDFVRLVAITIFAGLFSVPVMIKLSKGMLK
                     LHELIPLRTMVLSVILFVSGLVWFSTGFIGLGVLVIGTLMGLMPPRIGIRRSHGMGII
                     LVPIMIYTFGQQFDSFGFI"
     gene            complement(2866..4452)
                     /locus_tag="HA345_05830"
     CDS             complement(2866..4452)
                     /locus_tag="HA345_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84909.1"
                     /translation="MARMWVMFLTSLLLVMTMNFYAVVREPELVPIEDLPEYPMETVK
                     IEGILTSWIRDPYGDGDDRIDMQVMDKNDGYTVAEVRWVKNGYINESNIPAIGSIVYV
                     EGEIVEWNGSIWLQSSGRGAVYAKAGADVNPTWTSLSELARDPLAFDGESITVEAYVG
                     KSIAPNITRQSFYLQDNPSYSNADHMLYVRLEGRVMDQYEAGSKVRLTGWVLFDSRNL
                     RYQMFSQSSTLQILHEAGPAQLRWSANAMSLSYDVGKLVTIDGTLQMEGENLMLRGPT
                     TEDALCAIIDHNGEPPLDEYRENWTGRLQWSDSKATICMMIDLGEQPEPDIPNDGVIP
                     LDYIAMNPFLYANSSHTVEGWMSNPICPDYLKGYVQDAPEYTSGMIKLRIELSGERSK
                     CIEAGQAVRMVGTIVWDVEDARVIIRISEINLTGPTPGYATLTWGETYADWRWEENKI
                     VKIQGIIEAQDNGTTQTLRQAGTDRSICLIGDGTEASQFGEDVPTLDWRGRLILENDM
                     GGTSSAWVCLDIRGHEQTWA"
     gene            4544..5878
                     /locus_tag="HA345_05835"
     CDS             4544..5878
                     /locus_tag="HA345_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84910.1"
                     /translation="MKGLRRHTVPFLCLVLMCSANTLSPLEPVSEIVFVEGDEDPVRN
                     EILATVPIWVVGDQWTYTVMLDAISLVEDADTLEGASLDILAGTATRTVTSITDGTDY
                     GFNEPLYLVSTTMFAQGQGVFPVPAIGSVAGTLQISMAEAMLVRVADLGIVRTARAID
                     LDFASVVNLDIADVDEFANYTPVYEIYDFPVRSEDVHLISLERAMEYSGEGLVSFPDD
                     TQYNNTERSVGPLSVIESELLSIPCDGGALAFVERADDGVVIEERHYCPSIRNDVYWK
                     SHDIGLNGVKGEFQLISHLPGVDLSSSPNTPVVTVVLEDDDVPLDGPINITVNVVDVD
                     GSPAVGDVHLYRGLGHETVTLSSGQAIYNVTAGNNTDDTITIDDWASHGFVVCYDHDS
                     DANTFRACGVATVTIQGSAIGQLIREKLVSDVSVLIDDIGRTGQKAHRAIRF"
     gene            complement(5807..6652)
                     /locus_tag="HA345_05840"
     CDS             complement(5807..6652)
                     /locus_tag="HA345_05840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84911.1"
                     /translation="METIWENGSTMFESDLLNITIEMNVECWEPVDRIGIIPAFADCK
                     YNWNYLISFTVGPEDNTVEFEAVQWNNVTYSGDWPETFRIGDSWTTEENVDREYNHRS
                     RSNGGVWNETEIQSISEASTWSWTVMDEVNVYLGENADIKEEATRVQILEAGGFRNNT
                     YWLDEEGYVVRNEFREDGVLLATLQLTDWTYSLEDQRGTQVSGGTGASALFFGALITI
                     VLLTGIGWIGWRAYNLVNEEIIDEVAERIVETERRLRGNSSESDRPVGLLSRTSDVID
                     EDRDI"
BASE COUNT         1623 a         1664 c         1656 g         1816 t
ORIGIN      
        1 gtggggaaga gcgcatcagt ccaggtaagt ccatttacac tgcgaatctt ggagtggccc
       61 actctgactg atgggtatgt gagttcgtcc gtaactgaac cgttggatgc gaagacagct
      121 aattggtcgc ccccattgtt gaggacgccg tattctgagg tgctgttgat ggccacaact
      181 cttctgcttc cagggtgaat gtgggtgctg gtggaatcgg ttgcatcaaa tccaatcaga
      241 tgtgattcgt ttaggctgat gttgttagaa ctactatcca tgatgtagta gcctaggagg
      301 tcgactgtgg atgctcctat attctcgagt tcaagccatt ccccacctgg ccaagatgcg
      361 ttgtcatctg agaagaaggg gtcagcgaga acctcacgca cacggattcc tgtatcgtag
      421 taggttgggc cgctactgct tcccccattt gctgtaccgg gtgtaatcgc agcggattcg
      481 atccagaccc cattagggtt cgaggcgtcc tcgataagag tagaaccttc tgtggggcgt
      541 agagtccagg tgacggaatg taccagcgta ccgcttggag tcagtagttc aacaactccg
      601 tttgtgttct tcaggcacat cccacaggcg cctccatctc cgttcctcgc aagaacgatg
      661 taatctcctg cagctactgt gaaacttgtt gcactacttg gatagacaat gtttgtagtt
      721 gccattggaa gagctcgctg atagtggtcg tgcagggtcc atgatgcaag gtcaacagaa
      781 gtggttcctg cgttatggat ctctacccat tctcctgagg tccagtcgct tgggcctacg
      841 gtgtcggtct ccgctccaaa ggcgttaacg agtacttcag agatgcatac atcccctaca
      901 cacgcggagg ttcttccctg tgtgtctgct tccactggga tatcagtgag tggatttagg
      961 ccgagaccgt atcctgtagt ggtcgatgcg acaaagagtg tcgttaggag aattgcagcg
     1021 agacgtgata cacggtgagc ggccatcatc cgaacgaggc ccaagtcggg tctttaggct
     1081 gatgcaaggg tttagtcttc aaatgaatcc gaaactatcg aactgctgcc caaatgtgta
     1141 gatcatgatt gggacgagga tgatgcccat tccgtgcgaa cggcggatgc caatccttgg
     1201 tggcatcagt cccattagag tcccgataac taagacacct agtcctatga aacccgtact
     1261 gaaccagaca aggccactga caaagagaat cacagagaga accatcgttc gtaagggaat
     1321 aagttcgtgg agtttgagca tcccctttga gagtttaatc ataacaggaa cagagaacag
     1381 gcccgcgaaa attgtgattg ctacgagtcg gacaaaatca gatgggggtt cgaaggtacc
     1441 ccagatgtca attggataaa tcatattgag tgcaagtgcg gcacctgaac gcggtcgtcc
     1501 gaccatgtac aggaaaccga gaaccatcac cgtcactgaa gtattgactg aagaaagtac
     1561 ggcaattacc tcgaggtcct gcttgtttac ttcttcaatt tcatcgaagt tttcaggagt
     1621 gtcttgagct aatgcaatca aagtatcgaa gtcggtcatt tcctcatctt cgctagccga
     1681 gacttctacc ttctcttcgt ccacatccac ttccatatcg ttcgtatcaa agtcctcttt
     1741 ctgatccact ggccctccta cttcttccat aaacaggcgt cggcgctcgg cgagcatctc
     1801 ctctggagac atgtctcggg atgaaggtga atattcgaag tcagccggga cgaagtttgg
     1861 atcccttagg cggcccgtaa tgttccggat tgacatcact acaaccgttg cttgcgcagc
     1921 ggtcatgcca ggtaaaatag ccattacaga ggacacgatt gctgaaagga atgtaggtac
     1981 agcaaggggc ttcatgggag gaagttccca atttggttcc tgcttcggca tctcagaggt
     2041 tgtcacgtag atgtcaatca ggttggcgat accgaacaga cctgcaaggc tcggcattag
     2101 aagagttgca gatggcatac ctactggtga acgggccggc aactcaaaca cggcccaacc
     2161 atacatgcca gagaggagga agaatgccat agcgacgaag atgccagctt tccttgagga
     2221 actgccgaag cgcaaatcga ttgcattcca ttcgcgttca tagcggaagg cgaagattgg
     2281 gattgacact cgaataggcc gaggcaaagg taccctcatc caagatgtaa tcttctgtaa
     2341 gaacgtgggc caagggaggc gtgtggtctc agtcattagc agaaaagtcg agatgctaag
     2401 taggagccaa ggtagaatgt ctcgactccc ttcaaaccag tttaatcccg gattgtcacc
     2461 gaatatgagc ctcgcgacaa tgagtaaggg gattgccatt atcatgccca tctgtgatcc
     2521 acgtgcagag tatgctacac cttgtgcggc ttggccagtg actaacattc ggtgcccagg
     2581 taacagggcc agtgccatgt tatcgtcagg cgcacccacc aatgcgctgg ggatgtagtt
     2641 gaggaaggtg tggactgtgc cacaggatac gatcattcct gcgacaaggt cgagtggaag
     2701 gccgattcca acggcgattg gagtgagtga gaccgcaatc aaggccacgt tattgacgtg
     2761 aaatccaggg attagaccag tgaatgtacc gaggattgcc cctgccccaa aggccacaaa
     2821 gagccagaat aggtctgcaa agtaggtctc gagcatgtgg ctcacctatg cccaagtttg
     2881 ttcatgtcca cgtatgtcta agcataccca ggcgctgctg gtaccaccca tgtcattctc
     2941 aagaatgagt cgaccacgcc agtccaaggt tggcacatcc tctccgaatt gacttgcttc
     3001 agttccatcg ccaatcaagc agatacttcg gtccgttcca gcttgtcgta gtgtttgtgt
     3061 tgttccattg tcttgtgctt cgataatccc ttgaatcttc acaatcttgt tctcttccca
     3121 gcgccagtcc gcgtaggttt ctccccatgt caatgtcgcg tatccgggtg ttggacctgt
     3181 taggttgatt tccgagattc ggatgatgac tcgggcatcc tcgacgtccc aaacaatagt
     3241 tccaaccatt cgaactgctt ggccagcctc aatgcatttc gatctctcgc ccgagagttc
     3301 aattctgagc ttaatcatcc cgctagtata ttcaggtgca tcttgcacat accccttgag
     3361 atagtccgga cagattggat tagacatcca tccctctaca gtatgtgacg aatttgcgta
     3421 taggaatgga ttcatcgcga tatagtccaa tgggattacg ccatcattgg ggatatctgg
     3481 ttcgggttgt tcgccgagat caatcatcat gcagattgtt gccttactgt cactccattg
     3541 caatcgtccc gtccagtttt cacggtattc atccaaaggt ggttctccat tgtgatctat
     3601 aatcgcgcat aatgcatctt ctgttgttgg ccctctaagc atcagatttt caccctccat
     3661 ctgaagggtt ccgtcgatgg tgaccaattt gcctacatca taggataggc tcatcgcgtt
     3721 agctgaccac cgtaattgag caggtcctgc ctcgtgaagt atctgaagag tagaagattg
     3781 cgagaacatc tgatatcgca gattccttga atcgaacaga acccatccag ttagacgaac
     3841 tttgctgccg gcttcatatt ggtccatcac gcgcccctcc aatctcacgt agagcatatg
     3901 gtcggcgttg gagtaggatg gattgtcttg taggtagaag gattggcggg tgatattagg
     3961 tgcgattgac ttgccaacat aggcctcgac agtgattgat tctccatcga aggcaagagg
     4021 gtcacgtgct agttcagata ggctagtcca agtagggttt acatcagcgc ctgcctttgc
     4081 gtaaactgca cctctaccac tcgactgtag ccaaatactc ccgttccatt cgacgatttc
     4141 accttcaaca tatacaattg aaccgattgc aggaatattg gattcgttga tgtatccgtt
     4201 tttgacccaa cgaacctccg caactgtata tccatcgttc ttgtccatta cctgcatgtc
     4261 gatacgatcg tcgccgtctc cataggggtc gcgaatccaa gatgtcagga taccctcgat
     4321 tttgaccgtc tccatggggt attcggggag atcctcaatc ggtacaagtt cgggttctct
     4381 gaccacagcg tagaagttca tcgtcatcac gagtagaaga gatgtcagga acatcaccca
     4441 catgcgagcc atgttctcgg ctcagcatga acgacggcat gaatgtgttg aacggagtca
     4501 gttcgccgac gattctattt cactcgacgt accgtggatg cccatgaagg gccttcgtag
     4561 gcacacagtc ccctttctgt gcctcgtttt gatgtgttca gcaaacaccc tgtctcctct
     4621 tgaaccagtt tctgagattg tattcgtgga gggtgacgaa gatccagtgc gtaatgagat
     4681 acttgccact gtaccaatat gggttgttgg cgatcagtgg acctacactg tgatgcttga
     4741 tgcaatcagt ctggtagagg atgcggatac cctcgagggt gcttcgttag atatcctcgc
     4801 ggggactgct acacgaacgg tcacctccat cactgatggt actgattatg gattcaacga
     4861 gccattgtat cttgttagta caactatgtt cgctcaagga cagggtgtat ttcctgttcc
     4921 agcaattggg tcggtcgcgg gtaccctcca gatttcgatg gcagaggcaa tgttagttcg
     4981 agtagcggat ctcggtattg tccgaactgc tcgtgctatc gatctcgact ttgcttcagt
     5041 agtgaatctt gatatcgccg atgttgatga gtttgctaac tacacaccag tctacgagat
     5101 ctacgatttc ccagttcgtt cagaggatgt tcatcttatc tcgttggaaa gggcgatgga
     5161 atactctggc gagggccttg ttagtttccc tgatgatact cagtacaaca atactgagcg
     5221 ttcagtgggt ccattatcag tcatagaatc tgaacttttg agtatccctt gtgatggagg
     5281 cgccctcgca tttgttgaac gtgcggatga tggggtggtg attgaggaac ggcactactg
     5341 tccatctatt cgcaacgatg tgtactggaa gtcccacgat attgggttga atggggtgaa
     5401 gggggagttt caattaatct ctcatcttcc aggagttgac ctcagttcat ctccgaatac
     5461 ccctgtagtc acggtagtgt tagaggatga tgatgtccct cttgatggcc caatcaacat
     5521 cacggtcaac gttgttgatg tcgatggttc tccagctgtc ggtgatgtac atctttaccg
     5581 tggccttggt catgagaccg tcacgttgtc ttcaggtcag gcaatctaca atgtaacagc
     5641 aggcaataac actgatgaca cgataacaat cgatgattgg gcgagtcatg gcttcgtggt
     5701 ttgttatgat catgattccg atgccaatac atttcgagcc tgtggtgttg caacagtgac
     5761 tatccaagga tcagcaatcg gccaactaat ccgtgaaaaa ctggtttcag atgtctcggt
     5821 cctcatcgat gacatcggac gtacgggaca gaaggcccac cgggcgatca gattctgaag
     5881 aatttcctct gagacgtcgt tcggtttcaa caatacgttc cgctacttcg tcgattatct
     5941 cctcatttac gaggttgtag gctcgccatc caatccatcc tattccggtc aataggacga
     6001 ttgtaatcaa cgcaccaaag aatagggcac ttgccccagt tcctccgcta acttgagtgc
     6061 ctcgttgatc ctctagcgaa tatgtccaat cagtcaactg aagtgttgct aagagtacac
     6121 catcttctct gaattcattg cgcactacgt atccttcttc atcaagccaa tacgtattgt
     6181 ttcgaaagcc acctgcttct agaatctgaa ctcgtgttgc ctcttctttg atatccgcat
     6241 tttctccgag atagacattc acctcgtcca ttactgtcca agaccaagtg gatgcttcag
     6301 atatcgactg tatttctgtt tcattccata cccccccgtt agaacgtgat cgatgattat
     6361 attctcgatc gacattctcc tcagtagtcc atgaatcacc aatgcgaaag gtctctggcc
     6421 aatcccctga ataggtgaca ttgttccatt gaactgcctc aaactctact gtattgtcct
     6481 ctggtcctac agtaaaggag atcaggtaat tccagttgta tttacagtcc gcaaacgcag
     6541 gaatgattcc gattcggtcc actggctccc agcattcaac attcatttca atggtgatgt
     6601 tgagtaaatc agattcaaac atggttgaac cattttccca tatggtctcc ataacgatcc
     6661 tatggctttg ctgagcatat ccacagttcc cctcccaagc tgaacgcgtg cattctcttt
     6721 cacttccata cacaattgtc agtcgttgcc catctgtct
//
LOCUS       DUKB01000174            6140 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_4530, whole genome shotgun sequence.
ACCESSION   DUKB01000174 DUKB01000000
VERSION     DUKB01000174.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6140)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6140)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6140
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_4530"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(73..1323)
                     /locus_tag="HA345_05845"
     CDS             complement(73..1323)
                     /locus_tag="HA345_05845"
                     /inference="COORDINATES: protein motif:HMM:NF012497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84912.1"
                     /translation="MAADMLGHSDDSTIRINPKTVRSIEWDLAPSKSHMIRWLLLAAI
                     SDGSTVIRFNGSPGADIQSMARCLEQLGIVITRNPESWVVEGRHAQELIAPQAVVNCG
                     NSGTALRLLLPYAASFDVPVMVDGDRTLRSRYLPTLTTALNNLGAEISPLNEPDSLPC
                     LVKGPLESSSIEIDVSMSSQPLSSILFAMPRVSASVDVDLHGSAVSRRHAELSFRIAA
                     ETGSSNSWDATMDSIHLEPWSPAIPNNVHIPGDMSLISFGLLFSRLHDAELTIPRLPA
                     ENEGLGSEILLDLMNSPPHNPLDIDLRDANDLLPPLAAFLAIGPGGRLRNASHARYKE
                     SNRIRHSVELLSQFGLKIEEMEDGIQCVGGQSPIEPYSIVNVHGDHRLSMTAICLASK
                     VGGTIGGTGVWEITDPDFLKRVIS"
     gene            complement(1368..1874)
                     /locus_tag="HA345_05850"
     CDS             complement(1368..1874)
                     /locus_tag="HA345_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84913.1"
                     /translation="MDRVEEADGAVSPVIATVLLLAITVLLTSGIYLMVQDAVRVPDK
                     GIPYSQLSSQSLDNGFQVVRVTDLSTELLTATVKYQIIPPSTSNASMIEGMVNDADVY
                     GAIGSNVTFQDRDAGLTVNRGDYFILNATALGSEDGDWTFRLFFLGSGSRGAADLGQV
                     ILPPVVNS"
     gene            complement(1916..2731)
                     /locus_tag="HA345_05855"
     CDS             complement(1916..2731)
                     /locus_tag="HA345_05855"
                     /inference="COORDINATES: protein motif:HMM:NF018455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84914.1"
                     /translation="MSINFDPEDEEYYGDMGSIGSVKFDRILTGTPHNTGSIPRGFSI
                     LASGNAGAGMDLFAKQFASVAEDPENTILISTSETSNEILSVYRKYDWPTDIRVRTMG
                     EEYNTEVLTRELAASRYRIEGFTLSDIQKLAQTRFVEQKNHDFLTDLATQVTSLGPYF
                     RAVIDSLDFFYSRFDPARVTSMLRIMQAHAQRNRGLLLLTVSDQAVEKATERELMAIC
                     DIVMEFEVGMRGSDFDTRMVIRRFRNAPENLAFITFRVTPEEAITPETVERVA"
     gene            complement(2742..3326)
                     /locus_tag="HA345_05860"
     CDS             complement(2742..3326)
                     /locus_tag="HA345_05860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84915.1"
                     /translation="MIEYDAGIAEQLSQVTTTSSVQVRVGTSNSEMVLASVLQPLIQG
                     FGMGGVYITASKTAPNVIEMMNTIGLDISPIHFIDCVSPGILGGTQNPYTNIGYVDSP
                     IMLESMLLRSLHYLENSGSQQNFVILDSVNALSIYNEERILAEYLHTFINTCQNRQIL
                     SLIVNVPDQTPAGVLANMDLYCSDLIDRGQVVIN"
     gene            complement(3323..4081)
                     /locus_tag="HA345_05865"
     CDS             complement(3323..4081)
                     /locus_tag="HA345_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015282863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circadian clock protein KaiC"
                     /protein_id="HIH84916.1"
                     /translation="MLGAPSYERDRCVTGIRGLDEILRGGIPYGSAILVSGTCGSGKT
                     TLGMEFLMNGARSGEACAHFSATEPSVKLLENVRQFSFFDMSAVDQGLINVFDMDVLF
                     SWLGLDKSTFNLDDIDAMVKAITDIVNTIGVTRLVIDSVTSLCYKVPNEQLIRDFLFK
                     LGKSLSTLGCTTLLIAEITSVGGTAHRSAFGVEEAIADGIIVLGDVERMGHLLRYLQV
                     VKMRGTDHSRAKYALELTRSGVMLTPMLKWGVSD"
     gene            complement(4139..5176)
                     /locus_tag="HA345_05870"
     CDS             complement(4139..5176)
                     /locus_tag="HA345_05870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lamin tail domain-containing protein"
                     /protein_id="HIH84917.1"
                     /translation="MRRDMRRDDQALTAVIEFLSAFVLFLVIVSAFLSLTRLTLGPNE
                     PMVDRLDEHAADGLMRLTSSEGWAVPLEDGVRDTENSTSDWHLLNASTLLDSDVLPGL
                     ADSNGHIDPLRIQALQNLTEGQLKAGLGFPSYASVNLSVQIIESPESNRVGTVLFLDG
                     TPRSSATTSAASFRTMPMGAEIIEISLEVHNAGSLPPLLMITEFSPHAVIGEPEWIEI
                     HNEGGFAVDLNGWGVARNGFFTLIGTDALGGDQVLLLSGDPSVMEHGNASLVIDVSSS
                     YVLGRGLIDGLDDSADTLRLTYNEPGSSFSQGIHTIPYDNTWDFEAGYSAKLSVDGGW
                     NVSDTTSPGDL"
     gene            5338..>6140
                     /locus_tag="HA345_05875"
     CDS             5338..>6140
                     /locus_tag="HA345_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84918.1"
                     /translation="MSLRTRMVPLVLLLFITSTIPLSPAVDATSSRNLQDFQIVAPIE
                     PFINGSYDLWETQSLIVDVRNNASTPIGGRQLQVSVCAGDHTAGNACPNQASGFPKTL
                     FLPTLQPDEIYTAEFSGGIYTGNLQNQTYTVVYEFSSADIRPENDRISYLFHRVTPLK
                     DIVYLSNNADTTYNSGTEYTLSATASTGQFTPGDQAELGWTLNQIDALVGEQSDCTRI
                     GAGDQLPDTGASPDDAPPYISTELTSSNDWINLSVNATGLQIGETYAIT"
BASE COUNT         1737 a         1555 c         1408 g         1440 t
ORIGIN      
        1 ccagattgga aagacccccc cactggagag gatgattata cgatggtccg aatcagaacc
       61 gcgtgaatgg aatcaagaaa ttacacgctt gaggaaatct ggatcagtta tttcccatac
      121 acctgtaccc ccgatagttc ctcccacttt cgacgcaagg caaatcgcag tcatcgaaag
      181 tcgatggtcc ccgtgtacat tgacaattga atatggctca ataggagatt gaccacccac
      241 acattggata ccatcctcca tctcttcgat cttcagacca aactgagaaa gaagttcgac
      301 agaatgtcgg attcggtttg actctttgta ccgtgcatgg gatgcatttc gaagacggcc
      361 ccccggacca atcgccagaa aggccgccaa gggtggaaga agatcattgg catccctcag
      421 atcaatatct aagggattat gtgggggtga attcatcaaa tcaagtagaa tttcagaccc
      481 aaggccctca ttctccgcag gaagacgagg aatggtaagt tccgcatcat gtaggcgtga
      541 gaaaagtagt ccgaacgaaa ttaggctcat atcacctggg atatgcacat tatttgggat
      601 tgcaggggac catggttcaa gatggataga atccatagtt gcatcccaac tgtttgatga
      661 acccgtttct gccgcaatcc tgaagctcaa ctctgcatgt cgtcgagaca ctgcagaacc
      721 atggagatca acatcaaccg aggccgatac acgaggcatg gcaaacagga tggaagaaag
      781 tggttgacta gacatagaca catcgatttc gatagatgat gattctagag ggcctttaac
      841 gagacatgga agtgaatcag gctcattgag tgggctgatt tcagctccaa gattgttgag
      901 ggctgtagtc aatgttggaa gatatctact acgcagagtg cgatcaccat cgaccataac
      961 tggtacatcg aaagaggcag catagggaag tagaaggcga agagctgttc ctgaattacc
     1021 gcagtttacc acagcctgag gggcaatcaa ttcctgtgcg tgtcgccctt caactaccca
     1081 agattcagga ttacgagtga ttacgatgcc taattgttcc aagcatcgag ccatggattg
     1141 gatgtctgca ccaggggagc cattgaatct aatcaccgta gatccatccg atattgctgc
     1201 caacaataac caacgaatca tatgggattt cgacggagca agatcccact caatcgaacg
     1261 caccgttttc ggattaattc ggattgtgga gtcatctgaa tgacccagca tgtccgcagc
     1321 cattagacca actcacttag gcgataggct tcatccttcg ctcggaatca ggagttcaca
     1381 actggaggta ggataacctg tccaaggtca gcagcaccac gggacccact acctaggaag
     1441 aagagacgga aggtccaatc tccatcctct gagccgagtg ctgttgcatt cagtatgaag
     1501 taatcaccac gatttacggt taaccctgca tcgcgatctt ggaatgtcac attcgaacca
     1561 atggcgccat agacatcggc atcattgacc ataccctcaa tcatcgaagc attgctagtc
     1621 gaagggggga tgatttggta cttcacagtc gcagtaagga gttcagtaga caaatcggta
     1681 acacgtacaa cttggaaccc attatcaaga gactgagacg aaagttggct gtagggtatg
     1741 cccttgtcag gtacgcgaac tgcgtcttgt accatcagat agatgccact ggttaggagg
     1801 actgtgatag cgagaagaag cacggtagca attaccgggc tgactgcgcc atccgcttcc
     1861 tcgactcggt ccacatgtcc tatgtacacc acaccggact tgaaggttcg gcgcatcaag
     1921 cgacacgctc gacggtctcg ggagtaattg cttcctctgg agtcactcgg aaagtgatga
     1981 acgcaagatt ctcaggagca tttctgaacc gacgaatgac cattctagta tcaaaatcgc
     2041 ttccccgcat acctacttcg aattccatga caatatcaca gatagccatc aattcacgct
     2101 ctgttgcctt ctcaacggcc tgatcgctaa cagtcagaag aagtaaacca cgattccgtt
     2161 gtgcatgagc ctgcataatc cgaagcattg aggttacacg tgccggatca aagcgtgaat
     2221 agaagaaatc taagctatcg ataaccgctc tgaagtatgg tcctaaagaa gtgacttgcg
     2281 tagcaagatc ggtcaagaaa tcgtgattct tctgctctac gaaacgagtc tgtgctagct
     2341 tctgtatgtc tgacaaagtg aaaccctcaa tacgatatct agaggctgca agttcccgag
     2401 ttaggacctc cgtattgtat tcctccccca ttgtacgaac tcggatatcc gttggccagt
     2461 catactttct atagacagaa aggatctcgt tcgaggtctc tgaagttgat atcaaaatag
     2521 tattctctgg atcctctgcg actgaagcaa actgcttcgc gaaaaggtcc attccagcgc
     2581 ccgcatttcc tgatgcgagg atagagaatc cacgagggat actaccggtg ttatgagggg
     2641 tccccgttag gatacgatcg aactttactg aaccaatgga tcccatatcg ccgtagtatt
     2701 cctcgtcctc gggatcgaaa tttatactca ttcgaatcac cttagttgat aaccacttga
     2761 ccgcgatcaa tcaagtcact gcaatacaaa tccatattcg caaggacgcc tgccggtgtc
     2821 tggtctggaa cattgacaat taaactcaga atttgccgat tttgacaggt attgatgaaa
     2881 gtgtggagat attcagctag aattcgttct tcattgtaaa tcgaaagggc atttacagaa
     2941 tctaagatga cgaaattctg ctgactacct gaattctcaa ggtaatgtag agaccgaagt
     3001 agcatagatt ccaacataat ggggctatcc acatatccga tgttagtgta tggattctga
     3061 gtcccaccaa gtatccctgg agatacacaa tcaatgaaat ggataggtga gatatcgagg
     3121 cctatcgtgt tcatcatctc gattacgtta ggagccgtct tagacgccgt gatgtacacg
     3181 ccccccatgc cgaatccttg aatcagtggc tgaagcactg aggcgagtac catctcagag
     3241 ttactggtcc caactcgaac ttggacactg gaggtggtgg tcacctgact aagttgctcg
     3301 gcaatgccag catcgtactc aatcaatccg acacccccca cttcaacatt ggagtcaaca
     3361 tcactccgct tcgagtgagt tcaagagcat atttggcgcg gctatgatca gtacccctca
     3421 tcttcacgac ctggagatat cgcagtaagt gtcccattcg ctctacatct cctagcacaa
     3481 tgatcccgtc ggcaattgcc tcctctacac cgaatgcaga ccgatgtgca gtcccaccga
     3541 cagaagtaat ctcagcgatt aggagagtag tgcaaccaag ggtggataga gactttccaa
     3601 gtttgaagag gaaatcacga attagttgct cattgggtac tttgtaacaa agagaggtaa
     3661 ctgaatcaat aaccaaacgt gtcacaccga ttgtgttcac gatatcagtg atggccttca
     3721 ccattgcatc gatatcatct aaattgaaag tggacttgtc aagaccaagc cacgaaaaca
     3781 aaacatccat gtcaaagacg ttgatcaaac cctgatccac tgcggacatg tcgaaaaagg
     3841 agaactgacg gacgttctca aggagtttta ctgatggttc agtcgctgaa aaatgggcgc
     3901 acgcctcacc ggatcttgcc ccattcatga gaaactccat gccgagagtt gtttttcctg
     3961 aaccacaagt accagataca agaattgcag aaccgtaagg gatgcctccg cgaagaatct
     4021 cgtctagtcc acggatgcca gtgacgcaac ggtcacgctc gtaggaggga gcaccaagca
     4081 tgggtatcaa gacgcttcac aactaagccc gttgataagt ccacgcacaa cataccactc
     4141 atagatcgcc aggagatgtg gtatctgaca cattccaacc accatctaca ctgagttttg
     4201 ctgaataccc tgcttcaaaa tcccaagtat tgtcgtaagg aatcgtatga atgccctggc
     4261 tgaaggagga gcctggttcg ttgtaagtca gacgtagtgt gtccgcagag tcatcaaggc
     4321 catcgattag ccccctacct agaacataag atgaactcac atcgataact aggctagcat
     4381 taccatgttc catcacgcta ggatcaccgc tgaggaggag gacttgatcg ccccctaatg
     4441 catcagtacc aatcaatgtg aagaaaccat ttcgagcaac tccccacccg ttgagatcca
     4501 ctgcgaagcc gccctcattg tgtatctcaa tccactcggg ttcgccgatt acagcatgtg
     4561 gagaaaactc ggtaatcatg agcaaagggg gaagggaacc agcattgtgt acttcaaggc
     4621 tgatttcaat gatttcggca cccatcggca tagtcctgaa ggacgccgca ctcgttgtcg
     4681 cagaactcct cggcgtgcca tcaaggaata ggactgttcc aacacggttt gattctggac
     4741 tttcgataat ctgcactgat aaatttacag atgcatagga tgggaagcct aggccagcct
     4801 tcagttgacc ttcagtaaga ttctgcaatg cttgtattct aagtgggtcg atatgcccat
     4861 ttgaatcagc caagccgggc aacacatccg aatcaagaag tgtgctagcg ttgagtaaat
     4921 gccaatcaga agtactgttt tcagtatcac gaacaccgtc ttcaagaggc actgcccaac
     4981 cctctgaaga ggtgagtcgc atgagtccat cggccgcgtg ttcgtcaaga cgatccacca
     5041 tcggttcgtt aggaccaaga gtgaggcgtg ttaggctgag gaaagccgag acgatgacta
     5101 ggaatagaac gaaggcagaa aggaactcta tgactgcagt gagggcttga tcatctcgac
     5161 gcatatccct ccgcatacca tggtgttcct ctaagaggaa atgaaccctt tctccttact
     5221 tgcttggaga tgggcatgaa tccctcattc gaccgcttcc accacgccca aagggcgttg
     5281 attatttacc atacgaacgg ccatgaatga atcatgtcgg gcacatctgc agccccaatg
     5341 tcgctgcgga cgaggatggt acctctagtc ctgctcctat tcatcacatc caccatcccc
     5401 ctatctcctg ccgtcgatgc aacatcctca aggaatctcc aagacttcca aattgtcgct
     5461 ccaatcgagc cattcatcaa cggatcatat gacctatggg agacccagtc cctgattgtt
     5521 gacgtacgaa acaacgcctc tacaccaatc ggtggaaggc agctccaagt tagtgtctgt
     5581 gcaggcgacc ataccgctgg caatgcctgc ccgaaccagg catctggatt ccccaaaacg
     5641 ctcttcctcc caacactaca gcccgatgaa atctatactg ctgagttcag tggtggcatc
     5701 tacacaggaa atttgcaaaa tcagacttac actgtagtat acgaattcag ttcagctgat
     5761 atccggcccg aaaacgatcg tatctcctac ctattccacc gagtaactcc actcaaagac
     5821 atcgtctacc tctccaacaa cgcagataca acatacaatt caggtacaga atacacactt
     5881 tcggccactg cgagcacagg tcaatttacc cctggagacc aagcagaact aggctggacc
     5941 ctgaaccaaa tcgacgcctt agttggagaa cagagcgatt gtaccaggat tggggctgga
     6001 gatcaactcc ctgatactgg agccagtccc gatgatgcac ccccatacat tagtacagaa
     6061 ttaacttcaa gcaatgactg gataaacctc agcgtcaatg ccacgggcct acaaattggc
     6121 gaaacatacg ccattacttg
//
LOCUS       DUKB01000175            7330 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_58987, whole genome shotgun sequence.
ACCESSION   DUKB01000175 DUKB01000000
VERSION     DUKB01000175.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7330)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7330)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7330
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_58987"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="HA345_05880"
     CDS             complement(<1..431)
                     /locus_tag="HA345_05880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84919.1"
                     /translation="MEDRFILWAQVRSGTPRMRIDSGGVLRPERWPEGGGIVYLGDVA
                     SSFLSALGPHAPPEFIERPGFDEQRWTLAASSSGLQIIIRSESYWGFALLARCYLNRI
                     EIIGERSDVGRLVMDVLASLGHNPWNAAFGWAFKRHTNLSIP"
     gene            517..885
                     /locus_tag="HA345_05885"
     CDS             517..885
                     /locus_tag="HA345_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84920.1"
                     /translation="MAKPSKKVIDALTAIPGVGEATAKKLAGAGMKSKADVAKAGLKG
                     LKAAGISAGTATKIAGALASSAITKAKKKITEKPAKKAPSSKSTISDTESGVRGDQIG
                     KKLSAPKSVKDMMKRIRRSD"
     gene            923..1120
                     /locus_tag="HA345_05890"
     CDS             923..1120
                     /locus_tag="HA345_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84921.1"
                     /translation="MPRRKYGRLTKPLEIPPKDNCSRCRSGKHCPIPGHTGNIVRATK
                     DWTGPEDIEKRENKKRPGRKR"
     gene            complement(1121..2164)
                     /locus_tag="HA345_05895"
     CDS             complement(1121..2164)
                     /locus_tag="HA345_05895"
                     /inference="COORDINATES: protein motif:HMM:NF012798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HIH84922.1"
                     /translation="MDDQRQRSGWAADGPAGRIATPFDSSITGNNQVLPARLVRIQHL
                     ACLPLWETQLRSEKKSNHTIRSYMSTARRFSATIIPGEEEVDIEEISITEMHDRCNPN
                     NGRLDLFIQAIANLRPATINARIAAVSHLFRYIGHRIPDWVHRPTASRPLPRTLTREE
                     VMRVRRAAQDSENPLAHPIITLLLDTGMRVSELCALETGTIDLADCSARVYGGKGDKD
                     RTVLFTERSVDAMEAWFGTRRLLIQRKNPPNDDVDAVFLTNRVARISTRYVQKMMDVI
                     ADEALIPRTRLTPHTLRHNFATGLLERGVDLVSIQRLLGHSNIQTTRIYLDISDQTLR
                     EIYHRAQSASLEE"
     gene            complement(2259..3410)
                     /locus_tag="HA345_05900"
     CDS             complement(2259..3410)
                     /locus_tag="HA345_05900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HIH84923.1"
                     /translation="MRLCILSRGPQLYSTRRLVKEAENRGAEVEIVDPLETSLVLGER
                     NGQVIHRGWPIQADAVIPRIGYSVTSEGVRVVRQFESQGVYVANSADSILQSRDKLTA
                     SQILSHQGIPVPRTALVTSWRDTERAISRVGGVPCVIKASQGTQGNSVHLAHSIRDAS
                     ELVYRLLVNRETVLVQEYIRESHGRDVRVIVAGGEVVAAMRRVARGREFRSNFHLGGQ
                     VEAIELNDEYAKVAIRAANLLGIEVGGVDLLEGRSGPILLEVNSSPGLEGIEKASKIN
                     VAGKIIDMISQRHRIQSTDLQEVIRRRSGHGALTVRIKDWPEFIGRRIKDVQMGESRA
                     LTLLRGKDHIWSPNEDLVLQPNDELVIYGEIASIRAHMQRRNTASEERF"
     gene            3520..4797
                     /locus_tag="HA345_05905"
     CDS             3520..4797
                     /locus_tag="HA345_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84924.1"
                     /translation="MQPGNPPASEVSSSETPASVQGPSVAPPVGPKSAPAAAFDPISE
                     MEDRRNRKERREKQLSNLKENRSNKRMNVYLVLGVLTILFTFSFFPVTQGNHSENPHQ
                     NLSAIEVESWMDTSDANPNPHWSLEEVNDRAENKIWDGSDPNAGSFEQDLNQLIIGFP
                     ILDLGPINDVQVKVSIKGHRFDGGNTSFRLGLFEAPNGCAMMPSALPWETSSEMEDIS
                     TESQVIRYDQSDAPALPSGQEVEYALTVKPGRHCLVFQYIEGQQLSSDQWQGTNSQWK
                     ATVDAEAQMFWPRAFLLPICLIILPLLVATIIAAQKAGAAYKRVRYPEASDKSTEEQV
                     LDAADAERELGMDLTTGAENIDATNKSPTMPEEALSEDESPVESATESPAEVEQSGTD
                     SDNSGSAQIGGYTDEQLLAAGWSPEQIAQHRGN"
     gene            4893..6992
                     /locus_tag="HA345_05910"
     CDS             4893..6992
                     /locus_tag="HA345_05910"
                     /inference="COORDINATES: protein motif:HMM:NF014133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAP domain-containing protein"
                     /protein_id="HIH84925.1"
                     /translation="MKRSDLEKRTVADLKVLLEAMGLPRSGKKSELIDRIIDSLRLDE
                     QDTEDSDEDTPSEIQESNDDDSFLLLEEEEIESLDIPSEDPPSVIEVKVEKDSTEVLE
                     ATILEAVIVDPSEAKPRSEARSKPNASMPLGDSRKSSRAIFLGGLLLVAALAGGGYWW
                     TWMQDQQAFAVEPARYGDSMEFTMTGGSVQVNGNDMVALLRDNTGSALEKACGDLAIT
                     MNGMSSIAYRDAPTSEIGDPTDRDNAGATETRDGYGRIHLAAERSLSYDLLTDLSGRT
                     WTTDGSRCSSSLTWEMNANSVDISVTSWEELTEATTIRSEATVDFVTPDGDRSMLQNT
                     AFGGTGIAAVDEALPLFLQPAVPLDLRSTFGSILLEEGSTGTAEGWDYTVEPAQRVNG
                     ELLVPIKMEQPSIATCLGHAKLDLLVREGAPWPVEQKVDILIDKARESSDCSWHESAA
                     LDFAVPDGQLVITYTLRESTFTAGERAIVWGDLYNSRPGAGEGIPNTQVQWDGHMPDE
                     STIHAFTVEEAVECLMNSSAGNGVRSALNNDGYLYRMNHANDGAEETWNLSWVDPDSD
                     AGWTLVRSSGTDCTVVNDGTLAPSDAPEYNLNAIPNTLSIAEMQSRMMDTSDFLGATQ
                     VLMDGGVLRSDVEFTSRLVVTQDTDLLDFIDDIDEGEVTFTASRSWTDGNSENSFDLI
                     MDAERGRMVGWLQSTTE"
     gene            7056..>7330
                     /locus_tag="HA345_05915"
     CDS             7056..>7330
                     /locus_tag="HA345_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013584605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HIH84926.1"
                     /translation="MGSDEYPVVDILSIDDNLITDVSFNEVEHPIESEGFDTKARPRE
                     SIALPRAEPTVAGLSRVVTVTNQKGGVGKTTSVINIAAHVAMRGGRVL"
BASE COUNT         1857 a         1745 c         1901 g         1827 t
ORIGIN      
        1 gggattgata ggttcgtatg ccgtttgaaa gcccaaccaa atgcagcatt ccatggatta
       61 tggccaaggc tagctaagac atccatcacg agccgaccga catcactgcg ttcaccaata
      121 atctcgatac ggtttagata acatcgagca agcagcgcga aaccccagta cgattcgctg
      181 cggatgataa tctgtaagcc gctagaggat gctgctagag tccatcgttg ttcgtcgaat
      241 cccggacgtt cgatgaattc tggaggtgca tgcggtccta gtgcgctgag gaaggaactc
      301 gcaacatcgc cgaggtatac tattcctcca ccctcgggcc atcgttctgg ccgcaggact
      361 cctcctgagt cgatacgcat tctcggagtg ccacttcgca cttgcgccca taggatgaag
      421 cggtcctcca tggagattgg attccatccc tcggtcatca ttcatccggt gtaatgcagc
      481 gtgatgttca tacacggccg agaatccaac ctaaccatgg cgaagccaag caagaaggtg
      541 attgatgcgt tgactgctat cccaggtgtt ggggaagcaa cggcgaagaa gttggcaggt
      601 gctggtatga aatccaaggc agatgtcgct aaagccggtc ttaagggtct caaggcagcg
      661 ggcatcagtg caggaactgc aaccaagatt gctggagcac tcgcatccag tgcaattacc
      721 aaggcaaaga agaagataac cgagaagcca gcaaagaagg ccccttcttc taagtctact
      781 atcagtgata cagagagtgg tgttcgtggc gatcaaatcg gtaaaaagtt gagtgctccg
      841 aagagtgtta aggatatgat gaagcgtatt cgacgctcgg attaaccgca ttcactatct
      901 ccctcaactc gggaatgcaa tcatgccaag gcggaagtac gggcggctaa cgaagcctct
      961 tgagattccg cccaaggaca attgctctcg ttgccgttct ggtaagcact gtccgattcc
     1021 aggccatact ggcaatattg ttcgtgcaac caaggattgg acaggtcccg aagatatcga
     1081 aaagcgtgag aacaagaagc gaccaggccg gaaacggtga ttactcttct agagacgcac
     1141 tttgggcccg atggtagatt tctctcaacg tttggtcact gatgtctaga taaatccgcg
     1201 tcgtctgaat gttggaatgc cctagaagcc tctggattga gacaagatca actcctcgtt
     1261 caagaaggcc tgttgcgaaa ttgtgtctta gggtatgagg tgtcagacgt gttctcggga
     1321 tgagggcctc gtcagcaatg acatccatca ttttctgaac atagcgggta ctgatacgtg
     1381 caacgcgatt ggttaggaaa acggcatcta catcgtcgtt agggggattc tttctttgaa
     1441 tcaataatct ccgtgtcccg aaccaggctt ccatcgcatc tactgagcgc tctgtgaata
     1501 gtacggtacg atccttgtca cccttacccc catagactct ggctgaacag tcagctagat
     1561 cgatggtccc agtttcaaga gcgcataact cggatacacg cattccggta tcaaggagaa
     1621 gcgtgatgat gggatgagca aggggatttt ctgaatcttg agcagcccta cgaacacgca
     1681 tgacctcttc tctagtgagg gttcgtggta gaggccgaga agcagtgggg cgatgtaccc
     1741 aatcgggtat ccggtgccct atgtaacgga acagatgact tactgcagca atacgtgcgt
     1801 tgattgtcgc aggtcttaga ttagcgatgg cctgaatgaa taggtctagt cgtccgttgt
     1861 ttggattaca gcggtcgtgc atctctgtga ttgatatttc ctcgatatca acctcctctt
     1921 ctccaggaat aattgtcgct gagaatcgtc gtgctgtgga catatatgat cgaattgtat
     1981 gattactctt cttttcagat cttaattggg tctcccaaag cggaagacag gcaagatgct
     2041 gaattcgaac taagcgtgca gggagaactt ggttgttgcc tgtgatagat gaatcaaaag
     2101 gagtagcgat gcggcccgct gggccatctg cagcccatcc gctccgctgt cgttggtcgt
     2161 ccatgggtcc catcccatcc ccgaagggta aatgtggaac gaggtgtcgg gtttgaaccc
     2221 tctcatttca acagggggtc gagtggggga attgatcgtc agaatctttc ttccgaagca
     2281 gtattgcgcc tttgcatatg agcgcgaatg gacgcgattt ctccatagat cacgagttca
     2341 tcatttggct gtagaacgag atcctcgttg ggagaccaga tgtggtcctt accacgcaat
     2401 agcgtcaatg cacgtgattc tcccatttgc acgtctttga ttcgtcgtcc aatgaattct
     2461 ggccaatcct tgatccggac agtcaatgct ccatgaccgg agcgacggcg gataacctct
     2521 tgaagatcgg tggactgaat tctgtgacgc tgtgaaatca tgtcgataat cttccctgca
     2581 acatttattt tcgaagcctt ctcaattcct tcaagccccg gactcgaatt aacttcgaga
     2641 aggattggcc cgcttcgtcc ctcaaggaga tcgacaccac cgacctcaat gccaagcaga
     2701 tttgcggcac gaatagcaac cttagcgtat tcatcgttca attcaatcgc ttccacttgt
     2761 cctccaagat ggaagtttga ccggaattca cgtcccctcg ccacgcgacg catcgcagca
     2821 actacttcgc ctccagccac aattacacgt acatctcttc cgtgactttc tcgaatatac
     2881 tcctggacga gaacagtttc tcgatttacg agtaaacgat agacgagttc gcttgcatct
     2941 cggattgaat gagcaagatg gacagaattt ccttgagtcc cttgactcgc cttaatcacg
     3001 caaggcactc ctccaactct cgagatcgcc ctttctgtat ctcgccaaga ggttacgagt
     3061 gcggttcgtg ggactgggat accctggtgc gatagaattt gagatgcagt cagtttgtct
     3121 cgactttgaa ggatggagtc ggctgagttg gcaacataga cgccttgtga ctcaaactgt
     3181 cggacaacac gtaccccttc agatgtcacg gagtaaccaa ttcttggaat cacagcgtca
     3241 gcctgaatgg gccagccacg gtggataacc tggccattcc gttcgccgag aactaggctt
     3301 gtttctaacg ggtcgacaat ttctacctct gctccgcgat tttctgcttc ttttaccaaa
     3361 cgccgcgtgc tatacagctg cgggccgcgg gataagatgc acagacgcat cgccctcatc
     3421 attgaccgag ccaccccttt ccattttcaa atcatccctt gagagggcgc atcgaagata
     3481 tgggttcgat tgaaatcgaa gtccgtcatc ggtcaagcca tgcaacccgg gaatccaccc
     3541 gctagcgagg tatcatcatc agagacacct gcctctgtac agggcccatc agtggcacca
     3601 cctgttgggc ctaaatccgc tccagcagca gcgtttgacc ccatctctga gatggaagat
     3661 cgaagaaatc gcaaggagcg gcgcgaaaag caattgagta atctcaagga gaaccgctcc
     3721 aataagagaa tgaatgttta tcttgttctt ggagtcctta ctattctatt cacgttctcg
     3781 tttttccctg tgacacaagg aaaccattcc gagaatcctc atcagaacct tagtgcaatc
     3841 gaggtcgagt cttggatgga cacttcagat gcgaatccga atcctcattg gtcgctagag
     3901 gaggttaatg accgtgcaga aaacaagatt tgggatggca gtgatcccaa tgctggctcg
     3961 tttgaacaag atttgaatca attgataatc ggtttcccga ttctggatct gggtccaatc
     4021 aatgatgttc aggtcaaagt gagtatcaaa ggccatcgat tcgatggcgg aaacacctct
     4081 tttcgccttg gtttatttga ggcccctaac ggctgcgcga tgatgccatc cgctctccca
     4141 tgggaaacct cctcagagat ggaagatatc tcaacagaat ctcaggtgat tcgttatgat
     4201 cagtcagatg cacctgctct tccttcaggt caagaggtgg aatatgccct tacagtgaag
     4261 ccgggacggc attgcctcgt gttccagtac atcgaaggtc aacaattgag ttcggaccaa
     4321 tggcagggca cgaactctca gtggaaggcc actgtggatg cagaggctca gatgttctgg
     4381 ccacgcgctt tcttgcttcc aatatgcctc attatcctcc ctctactggt agctaccatc
     4441 attgctgcac agaaggcagg tgctgcgtac aagagagtca gatatccaga ggcttcagat
     4501 aaatcaacag aagaacaggt acttgatgca gcagatgctg agcgagaact cggcatggat
     4561 ctaactactg gcgcagagaa cattgatgct accaacaaaa gtccgaccat gcctgaggag
     4621 gcactttccg aggatgaatc cccggttgaa tcagctaccg aatctcctgc cgaggttgag
     4681 cagagtggca ctgatagtga caattcaggg tctgcacaga ttggtggata taccgatgaa
     4741 caactacttg ctgcaggatg gtcgccggaa caaatcgcac aacatcgcgg caactagtga
     4801 tagggtctca aatctccatc attcacactg cgagtccaac ggtttgatag tgacgacgga
     4861 gacgtccatg caaggaaagg gagcatgatc cgatgaagcg aagtgatctc gagaagcgaa
     4921 cagtcgctga tctcaaggtt cttctcgaag cgatggggct cccacgttct ggtaaaaagt
     4981 cagaattgat tgatcgcatt atcgattctc tgcgacttga tgaacaggat actgaggatt
     5041 ccgatgaaga tactccatca gagattcaag aatccaacga cgatgatagc ttcctcctgc
     5101 tcgaagagga ggagattgaa tcactagata ttccttcaga agatccacct tctgtaattg
     5161 aagtaaaggt agagaaagat agtaccgagg ttcttgaggc aacaattctc gaagccgtaa
     5221 ttgtagatcc gtcggaagca aagccgaggt ccgaggctcg cagcaagcca aacgcatcaa
     5281 tgcccctagg tgatagcagg aagtcaagcc gagccatttt ccttggaggc ctcctactag
     5341 tagcggcttt ggctggtgga ggctactggt ggacttggat gcaggatcag caagctttcg
     5401 ctgttgaacc tgcacgctat ggagatagta tggagttcac gatgacgggc ggttcagttc
     5461 aggtcaatgg taacgacatg gtcgctctgc ttcgtgataa tacaggttct gcgttggaga
     5521 aggcttgtgg agatcttgca attacgatga atgggatgtc aagtattgcc tatcgtgatg
     5581 ctccgacatc ggagattggt gaccctactg atcgggataa tgcaggggct actgagacga
     5641 gggatggtta tggccgcatt catcttgcag ccgaacgatc gctttcttac gatcttctaa
     5701 ccgacctctc aggaaggaca tggactacgg acggaagtcg ttgtagtagt agtcttacat
     5761 gggaaatgaa tgcgaattca gtagatatat ccgttacttc ttgggaggag ttgactgaag
     5821 cgacaactat ccgttctgaa gcgacagtgg attttgtcac tccagatggg gaccggagta
     5881 tgttgcagaa caccgccttt ggaggtacag gaatcgcagc tgtagatgaa gcattaccgc
     5941 tctttttgca acccgctgtt ccgttggatt tacgctctac cttcggttcc attcttcttg
     6001 aagagggttc taccggaact gcggaaggtt gggactatac agttgaacca gcgcagcgtg
     6061 taaacggtga acttcttgtt cctatcaaga tggagcaacc tagtattgcc acatgtcttg
     6121 gacatgcgaa acttgacctt cttgtacgag agggggcgcc gtggcccgtg gagcagaagg
     6181 tggatattct gattgacaag gcacgtgaat caagtgattg tagctggcat gaatctgcag
     6241 ctctggactt cgctgttcct gatggtcaat tggtgattac ttacacactt cgtgaatcta
     6301 ctttcactgc tggggaacgt gccattgttt ggggcgacct atacaatagt cgaccagggg
     6361 caggtgaagg gattccaaat acgcaggtgc agtgggatgg ccatatgcct gacgaatcga
     6421 caattcatgc atttacagtt gaagaagcag ttgaatgtct catgaattcg agcgctggaa
     6481 atggtgtacg ttctgccctc aataacgatg gttatctgta cagaatgaat catgcaaatg
     6541 atggtgctga agagacatgg aacctcagtt gggttgatcc tgattcggat gcaggatgga
     6601 ctttggtacg ttcttcaggc accgattgca ctgttgtgaa tgacggaacg cttgccccgt
     6661 cggatgcgcc ggagtacaac ctcaacgcga ttcccaatac attgtccatt gctgagatgc
     6721 aatccagaat gatggatact tcggacttcc ttggagcgac tcaggtgctg atggatggag
     6781 gtgtgctacg ttcagacgtt gaattcactt cacgtctcgt agttactcaa gatacagatc
     6841 ttctcgattt tattgatgat atcgatgagg gcgaggttac cttcaccgcc tccagatcat
     6901 ggacagatgg gaattctgag aactctttcg atctgataat ggatgcagaa cgaggccgga
     6961 tggtaggctg gctccaaagt acgactgaat gaaacgtcac tctaacctct atacgggcgt
     7021 caccttgaat gcctcaggca ttcgctgagg taacgatggg ttcggatgag tatccggtcg
     7081 tggacatatt atctattgat gataatctca tcacagatgt ctcattcaac gaagttgaac
     7141 atccaattga atcagaggga ttcgatacga aggcacgtcc tcgtgagtcc atcgcattac
     7201 ctagggcaga accaacagtt gcaggccttt cacgtgtagt taccgtgacc aatcagaaag
     7261 gtggagttgg aaagaccacc tcggtaatca atatcgcagc acatgttgcg atgcgagggg
     7321 ggcgtgttct
//
LOCUS       DUKB01000176            9862 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_29614, whole genome shotgun sequence.
ACCESSION   DUKB01000176 DUKB01000000
VERSION     DUKB01000176.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9862)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9862)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9862
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_29614"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1912)
                     /locus_tag="HA345_05920"
     CDS             complement(<1..1912)
                     /locus_tag="HA345_05920"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012337.1,HMM:NF014819.1,HMM:NF027522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84927.1"
                     /translation="MPLDESPQDPFEPIAIIGVGAILPDAPDAETFWQNVIDTHVSIR
                     EVPEHRWVVADHWVEGGPKNVPEGKTYSKIGGFVEGFEFDWRRWRVPPGSLTQIDLSQ
                     QWAVSVSAAALEDAGYLGENPRSEIPKARTGVIFANALGGENRNLSNHRVWADSFARK
                     AVEAGMPLESVDSFKEAISEGAPRVDEDTMPGELANVVAGRVANLLDLQGPNYATDAA
                     CASTFAAILDASRLLQARQVDLMIAGASDRTMDPATFSKFSAIGALSASHSTPFDADA
                     NGFVMGEGAGAFILKRLDDAISDGDRIYAVIRGLGGSSDGRGKGITAPSTRGQVQALA
                     RTYQQAGYGPETVEMIEAHGTSTIVGDATELNSLTELYGGDAKAGSVGVGSIKSQIGH
                     LKAAAGAAGLLKATFALHHRTLPPSAGFVNPNTSIDWSSIPFFVPTEARDWPSPKSHP
                     RRASISAFGFGGTNFHCALEQFDPEFHANLAAEWRMRRDAYLMKPSAGFSDSVLASVM
                     KRYGITNQADFLSHASAFDKDGNDYLNRKELTAAAEAFSEDSASMTWEEIQAIEGGLL
                     LLNASDIESMSNILSEMRSNIFDGSPTFDDSPKGRRLSVVLPQISAEYVAEGVRVGLV
                     ADSWATLEKRFTM"
     gene            complement(1922..2713)
                     /locus_tag="HA345_05925"
     CDS             complement(1922..2713)
                     /locus_tag="HA345_05925"
                     /inference="COORDINATES: protein motif:HMM:NF024950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HIH84928.1"
                     /translation="MLELEGKVALVFGVASEDSIAWAICQRLAEAGCRLILGFQPRYR
                     SRLFQLKDQLDAIEAFYPCDVASDEQTKEFFDEWQNESLGAKADILVHAIGFAPRDTF
                     DRHMLFNEMDSIDLAMRVSAHSLQRLMRHSVPHLNPDSSTITLTYAASTRYVPNYGVM
                     SVAKAALESWVRELAARLGEDGHRVNAISAGPIRTLAAGGIPGFDRILDHVERNSPLR
                     RNTTQQDVAGAAVWLASPLSGAVTGQILHVDCGYSVTMVPESIND"
     gene            complement(2792..3748)
                     /locus_tag="HA345_05930"
     CDS             complement(2792..3748)
                     /locus_tag="HA345_05930"
                     /inference="COORDINATES: protein motif:HMM:NF013213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84929.1"
                     /translation="MSAEGLQSPERFWSGTEWTGPITDGHLHLDRSGRFLDAAHDFHR
                     SGGTRIILVHKPNFECLPTTMDAIHAAYLDTLAMADEVRDSVGLKVQVVLGPHPVTWV
                     HQIPSIGIEAATKLHLDAVDVALDYFESGDSVAVGEVGRPHFPVEDEVWNAANQMLHE
                     VLHRCSKRSCPVQLHVECRADRTFAEIDQIRNSAGLPVKFTLRHYAPSNVTESFRSGL
                     PVTVSMGKESIRGIALSLIEEELAVQDMTPFLMETDYLDDPRRPGAVLGPKTLPKRTN
                     ELGRYLQMPVSEGGLGWNRATVADLLWMLHRVWPDTLYGECR"
     gene            complement(3758..4282)
                     /locus_tag="HA345_05935"
     CDS             complement(3758..4282)
                     /locus_tag="HA345_05935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84930.1"
                     /translation="MAGPTITVENQVFRYRTSVVLDDERLVKETRAVLSGNLVVKQMS
                     QPPYILLIDSSKGTITVHGAVKEDLARMAVSEFLLGLGESDSGLRTEFGPMTASCDMP
                     AGVDLEKAIKSISEARYEARLDAIRIADMDHEVEILVFRNGRTIFLDSLSRRISERAA
                     EFWARRFERSRLYT"
     gene            complement(4282..5067)
                     /locus_tag="HA345_05940"
     CDS             complement(4282..5067)
                     /locus_tag="HA345_05940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84931.1"
                     /translation="MKPPPLLTWGAVDWQDPDGGIIRILPYCPLVDSAEEVEWSGLSL
                     IASTEDLALWSDQRREEADSPGRVRDAMIANLGPSGRVVKEMVTLDDPDIACFPDPVP
                     YNLLQYARSEGRRIWCIEPNFDDSSWVDMTLLIADSRTRTRSLLRAIGANRRVMKMAK
                     AIAMEPPSTDHISFHIAASLQAAWWRNEMESVPKDILGALHVRLAARLRGALSQLRDD
                     LDGQVDDGDDKVMLVPVPQVRLPEVLEALGSMPESEDFTMEEE"
     gene            complement(5078..>9862)
                     /locus_tag="HA345_05945"
     CDS             complement(5078..>9862)
                     /locus_tag="HA345_05945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84932.1"
                     /translation="DLSSYETEYVRLKFVLEKNDISDPPVSADLQGWYIDGLRVGDAL
                     PSSGSVTFRTFSNTDAQGGESPNGFGFLNMEAEVTGDGQLTVDVLEPGTTNTIADRHG
                     NSMSGLSGSIIELWDIDTGDHAAIDLRFNFNSGANQLNSPELFGFNIGTRYTTGFNTS
                     AMVFGENGYQQPGSWTSSPSSPSGLGISPVWVDESYNPPSERSTFAKPITAIRPIISD
                     DCPANTPAVSLIPSNSAAAGGVGMISLNPGVWNDLTAMTNGFGLLVNYSSVQCEVTGV
                     HADLRFAHHAEEVRLDVAGDGDIEWGIIEPAFGALGEQTQYRTGSVGGVSIGSDTSTV
                     SVTAGGVGQGATFMLPRGADVTNAQIGFMQNQIEDVDIYVAAAAQEEFLNTIEDLPQL
                     SPQIISDPLSDFADALNTLLDYDSSVVPTSDVDDFGNEWIQFRMKVASQNATPGQSIT
                     FTDLVVNYDWSRVITDGNYLARELSQGVAMGTATTGNVNIPLKFTSATGGSILLDTLS
                     ITTSMGHSSTISLTNGFTGLYDDGNIYEIVTTHSVSAQGQAIAGASLLMESPRGNIEL
                     QYTISNDTFWEVSDPVDGIDLSVSVSAPSATSAMQVNWRFRVSSDWDDTQSVMIYASS
                     ISDSGVIGLPAAAPLSPTVGNAVENDAGITDFSVYNQAGVEQTDLMDVKSSQSLVLTG
                     KVRFEDLNNAPDPASYSIVLEELNTSNLESEEWNEVDRRNGFVDGDFTWTPSLPTQTA
                     GARSYRFMMANFTGGDTVCPPSELSPDSDCAIRMLVSMDPLPPQLVNISVMDGANWRE
                     LTDNTWIPASSCQTFRVIARDNPIAPDALTLNYWVEKDHDTNLDRIATIDEYAQVPLI
                     RTNALNESEYTIDNQGAACISDIANQGLMNSPLVSLFVSGTDVGGNSVNGAGGPGISF
                     DLVTYQAMESSQPSVTSIRIQDDFGTSLTSANTTMYAGNTYHLRVQGADPNGWGDIAE
                     VRINLNPINAGDMVIHYTPSNDTAWTDSDWIQVLDLVEDGQGAEMRRLDGGILLDPFE
                     TQFILDIPIVFEWSVTTLNGVRTPVVEVTDFDPNNGGWTTTSGGAGNYVQKVSYSDDF
                     KLDRSSFTIEDTIGYITPSVGARESGFVYPGDMLRISGEYAFSQRLSDGIVINPQVPL
                     TLRIEQQQVEPDNVKGYIFAPSQIFEYPFDNGTFDIQHPAPTQTNEFTFTFSLVGLPS
                     GATDGTQSVDSVFYVNVDSEAPSATQLSSWEISDGDSVEIPAGILSSTQFECVSVKAF
                     VAERQRLLEGDVHLNWMYFKDGGNWTEFYQAFPEMSHFSVPMTFSGNNPVRASVNCVN
                     LWNATLPADLSGVELRFWISGTDSAGNALIGGGTYENAFDGGNFNVVYESASFEIQNV
                     LLSDSTPAVGEAMEIIVTIQNTGNKPGSFSGKVVTVVSGTTQSTTPVNSPVIQPGETT
                     DWRIKMGDFPAPLVNVQYQLVDNETGDVLDESTTFVVSLESDEQSGFSGAMIGLVALL
                     ALILIGIVVAVVVLSGRGGDDEDDYIEDDDFLPQGEAVAPLKSRGPPSRGSPGRGPPA
                     AELTEMERALQEFTFWDENTIQGYFDMGWSIDQLRDWLAEQK"
BASE COUNT         2629 a         2635 c         2301 g         2297 t
ORIGIN      
        1 gcatcgtgaa ccgtttctcc aaggtcgccc aagaatcagc aacaaggccc acgcgaacac
       61 cctctgcaac atattctgca gatatctgag gtaagacaac cgaaagacga cgacctttag
      121 gagaatcatc gaaagtgggg ctgccatcga agatattact ccgcatctca ctaaggatat
      181 tcgacattga ttcgatgtcg ctagcgttca ataggagaag gccgccctca atggcctgaa
      241 tctcctccca tgtcattgat gctgaatctt cgctaaaggc ctctgccgct gccgtaagtt
      301 cctttcgatt taggtaatca tttccgtctt tatcaaaggc ggaagcgtga gacaggaaat
      361 cagcctgatt cgtaatccca taacgcttca tcacacttgc aagtacactg tcagagaaac
      421 ctgcagaggg tttcatcagg taggcatctc gcctcattcg ccactcagca gcaaggttcg
      481 cgtggaactc aggatcgaac tgctctaaag cacaatggaa gtttgtccca ccgaaaccaa
      541 atgcactgat ggatgcacga cggggatgac tcttggggga aggccaatct ctcgcttcgg
      601 tcggaacgaa gaaggggata gaagaccaat cgatactcgt attcggattc acaaaaccag
      661 cagatggagg cagagttcga tggtggaggg caaaagtcgc cttcagaagg cctgcggctc
      721 cagcggctgc cttcagatgt ccaatctgac tcttgattga accaacccca accgaaccag
      781 ccttcgcatc ccctccatac aactcggtaa gagaattcaa ctcagtggca tccccgacga
      841 ttgtcgatgt accatgtgct tcgatcattt ctactgtttc aggaccgtat ccggcctgtt
      901 ggtatgtccg ggccaatgct tgcacttggc cacgagtact cggtgcagta atccctttac
      961 ctcggccatc actacttcct ccaagcccac gtattacagc ataaattcgg tcgccatcag
     1021 aaatagcatc gtcaaggcgc ttcaagatga aggcgcccgc cccctcaccc atcacgaacc
     1081 cgtttgcatc tgcatcaaat ggcgttgaat ggcttgctga caaagcaccg attgcactaa
     1141 atttggagaa tgttgcagga tccattgtcc ggtctgaagc acctgcaatc atcagatcca
     1201 cctgacgcgc ttgaaggaga cgagacgcgt ctagaatcgc tgcaaaggta cttgcacatg
     1261 cagcatccgt agcgtaattc ggaccttgaa gatcgaggag attggcaact cgccctgcca
     1321 caacattcgc gagttctcca ggcatcgtat cctcatcaac acgaggcgcc ccctcagaga
     1381 ttgcttcctt gaatgaatca actgattcta gaggcattcc tgcctcaacc gccttccgtg
     1441 caaatgaatc ggcccatact cgatggttgg acaaatttcg attctccccc cccagcgcat
     1501 ttgcgaatat cacgcctgtg cgtgccttcg ggatctcaga acggggattc tctccgagat
     1561 agcccgcatc ctccagagca gcagcagata cactgacggc ccactgttga ctgagatcta
     1621 tctgagtcaa tgaaccgggg gggacgcgcc atcgtcgcca atcgaactca aacccctcaa
     1681 cgaagccccc gatcttagaa taggtcttgc cttcagggac attctttggc cccccctcaa
     1741 cccaatgatc tgcaaccacc caacgatgtt caggaacttc tcgaatagac acatgtgtat
     1801 caatcacatt ttgccagaat gtctcagcat caggtgcatc aggtaggata gcccctactc
     1861 caatgattgc aattggctca aacggatcct gaggggattc atcgaggggc atatcttcac
     1921 ctcaatcgtt gatgctctcc ggcaccatag taacactgta gccacaatcc acatgcaaaa
     1981 tctgtcctgt gactgcacca ctcaatgggc tcgcgagcca cacagcggct ccagctacat
     2041 cctgttgagt ggtattccta cgcaatggtg agtttcgttc cacgtgatca aggatacgat
     2101 cgaaaccagg aatccctccg gcggctagag tccgaatcgg cccggcagaa atcgcattga
     2161 cacgatggcc atcttctcca aggcgagcgg cgagttccct gacccaagac tctagagcag
     2221 cctttgcgac actcattacc ccataattgg gcacataacg agtgcttgca gcatatgtta
     2281 gagtgatagt agaggaatct ggattcaggt ggggaactga atggcgcatc agtcgctgta
     2341 gggaatgggc actcaccctc attgcaagat cgatggaatc catctcgttg aacaacatgt
     2401 gacgatcgaa ggtgtccctt ggagcaaatc cgattgcatg caccaggata tcggccttcg
     2461 caccaagtga ttcattctgc cattcatcga agaactcctt tgtctgctca tcactggcaa
     2521 catcacaagg gtagaatgcc tcgatggcat ccagttgatc cttcaactgg aaaaggcgac
     2581 ttcgataacg aggctggaat cctagaataa gcctacaccc cgcttcagca agccgctggc
     2641 aaattgccca agcgatggaa tcttcagagg cgaccccgaa tacaagtgct accttaccct
     2701 ctagttccaa catggaatcg aacgacaccc cccaatttca ccatagggag taccgaagcc
     2761 atatgaccgt tgccgacggt tgggtaggca atcaccgaca ttcgccatag agtgtatcag
     2821 gccaaactct gtgcaacatc cacagtaaat ctgcaacagt agctcgattc caacccaagc
     2881 cgccttccga gacaggcatc tggaggtagc gacccaactc gttggttctt ttagggagtg
     2941 ttttcggacc aagaacggct ccaggccgcc ttggatcatc aagataatca gtctccatga
     3001 ggaatggtgt catatcctgt acagccaatt cttcctcaat taggctcaat gcaataccac
     3061 ggatagattc ctttcccata ctgactgtaa ctggcaagcc agaacggaat gactcggtga
     3121 cattcgatgg agcgtaatgt cgaagagtga acttaacggg gaggcccgct gaattacgaa
     3181 tctgatcgat ctcggcaaag gtacgatcgg cccggcattc cacatggagt tgaaccggac
     3241 acgacctctt tgagcaccta tgaaggacct catggagcat ctgatttgcc gcattccaaa
     3301 cctcatcttc aacggggaaa tgtggacgac ctacctcgcc tactgcaaca ctatctcctg
     3361 attcaaagta atcaagagca acatctacag catcaagatg aagtttagtc gcggcttcta
     3421 tcccgatcga aggtatctga tgcacccaag tcactggatg tggcccaagc actacttgca
     3481 ccttaaggcc gacagaatcg cgtacctcat ccgccatcgc aagagtatct agatatgctg
     3541 catggatagc atccatggtg gttggcaagc attcgaaatt cggcttatga acgaggatta
     3601 tccgcgtacc tcctgaacga tggaaatcat gcgccgcatc gaggaatctg cccgatcgat
     3661 cgagatgaag atgaccatct gtgattgggc ctgtccattc agtccccgac cagaatcgct
     3721 cagggctctg gagaccttct gctgacatgt agtccactca agtatagagg cgggaacgtt
     3781 caaatcgacg tgcccagaac tcggcggctc gctcagaaat tcgacgactg agagagtcaa
     3841 ggaaaatggt tctaccatta cggaaaacga gaatttcaac ctcatgatcc atgtcagcga
     3901 tacgaattgc atcgagtcga gcctcatagc gtgcttctga gatgctcttg attgccttct
     3961 caagatcgac ccctgccggc atatcacaac tagcagtcat tggtccgaac tcggtgcgaa
     4021 ggccactatc agattctcca agaccaagaa gaaactccga aactgccatc ctggcaagat
     4081 cttccttgac tgctccatgg actgtgattg ttcccttcga tgaatcaatc agaagaatgt
     4141 atggaggctg actcatctgc ttgacaacaa gatttccaga caatacggct cttgtttcct
     4201 tgaccaatct ctcatcatct aatacgacag aggtgcgata tcggaacact tggttctcaa
     4261 cagtaattgt agggccagcc atcattcctc ctccatggtg aagtcctcgg actctggcat
     4321 actacccaag gcctcgagga cctccgggag cctcacctga gggaccggga caagcatgac
     4381 cttgtcgtct ccatcatcaa cctgtccatc caaatcatcc cttaattgac tcaaagcacc
     4441 cctaagtcgg gccgcgaggc gtacatggag agcgcccaaa atatccttcg gtacggattc
     4501 catctcatta cgccaccacg ctgcttgtag agatgcggca atatggaacg aaatgtgatc
     4561 agtagacggc ggttccattg caatagcctt cgccattttc atcactcgac gatttgctcc
     4621 aatcgcccgg aggaggctgc gggtgcgggt tcttgagtcg gcaatcaaca aggtcatatc
     4681 tacccaactt gaatcatcga aattgggttc aatacaccag atacgtcgcc cctcagacct
     4741 agcatactgg aggagattgt agggtacagg atcaggaaag caagcaatat ccggatcatc
     4801 cagagtaacc atctccttga ccacacgacc agatggccct agattcgcaa tcatagcatc
     4861 acggacacgc cccggagaat ctgcctcctc cctacgctgg tcactccaca gagcgaggtc
     4921 ttcagttgac gcgattagag acaatccaga ccattctacc tcctctgcag aatccacaag
     4981 aggacagtac ggaaggattc ggatgatgcc cccatcaggg tcttgccagt cgactgcccc
     5041 ccaggtgagc agggggggtg gcttcatggg actcggctca cttctgctcg gcaagccagt
     5101 cgcgcaactg atcgatagac cagcccatgt cgaagtagcc ctggattgta ttctcatccc
     5161 agaaagtgaa ctcctgtaga gcacgctcca tctctgtcaa ctcagccgca ggaggtccac
     5221 gaccaggcga gccacgactc ggtggaccac gagattttag tggagcgacc gcttcgccct
     5281 gtggtaagaa atcatcatcc tcaatgtaat catcttcatc atcgcctcca cgccccgaga
     5341 gcacaacaac agcgaccacg atgccgatta gtatgagagc caagagagca actagtccaa
     5401 tcatcgcacc actgaatcca ctctgttcat cggattctag agataccacg aatgttgtgg
     5461 attcatcaag gacatctccg gtctcattgt ctaccaactg atactggaca tttaccagag
     5521 gagccgggaa gtcacccatc ttgatgcgcc aatcagtcgt ttcaccaggc tgaattactg
     5581 gtgagttaac aggagttgta gactgggtag ttccgctaac cactgtgact acctttccag
     5641 aaaacgaacc tggcttgttc ccagtattct gaattgtaac aatgatttcc atcgcttcac
     5701 ctacagcagg tgtcgaatca gagagaagga cgttttgaat ctcaaatgat gctgattcat
     5761 acacgacatt gaagttacca ccatcgaagg cattctcata ggtcccacct ccaatcaagg
     5821 cattaccagc tgaatctgtt cctgaaatcc agaatcgaag ctcgacacct gaaagatctg
     5881 caggaagtgt agcattccat agattcacac aattaactga agcccggact gggttgttac
     5941 cactgaaagt catcggaaca gagaagtgag acatctcagg gaatgcttgg tagaactcag
     6001 tccagttacc accatccttg aagtacatcc agttaagatg gacatcaccc tcaaggagtc
     6061 gttgacgctc tgcgacaaag gcctttacag acacgcattc gaactgagtt gaagacaaaa
     6121 taccggcggg aatttcgact gagtcaccgt ctgaaatttc ccatgaactc aattgagtag
     6181 cactaggggc ctcgctatct acattaacat agaatacact gtccacggat tgggttccat
     6241 ccgttgcacc agagggtagg ccaacaagag agaaggtgaa ggtaaactca ttcgtctgtg
     6301 tcggcgcagg gtgttgaata tcgaaggtcc cattatcaaa cggatattcg aaaatctgag
     6361 atggagcgaa aatgtatccc ttgacgttgt caggttctac ctgctgttgc tcgatgcgga
     6421 gcgtcaaggg cacctgcgga ttaatcacaa tgccatcaga aaggcgttga gaaaacgcat
     6481 actcgccgga gatacgaagc atgtctcctg gataaacgaa gccagattcc ctagccccaa
     6541 cactcggcgt gatgtagcca attgtatcct cgatagtgaa ggacgagcga tctaacttga
     6601 agtcgtccga ataggacacc ttctggacat agtttccagc cccaccagag gtggtagtcc
     6661 aacctccgtt gttggggtca aaatcagtga cttctacaac cggtgttcga acgccattaa
     6721 gtgtggtaac agaccactcg aacacaatag gaatatcgag gataaattgt gtctcaaatg
     6781 ggtcgaggag gatgccacca tccaggcgac gcatctctgc accctgtcca tcctcaacca
     6841 gatcaagaac ctgaatccaa tcgctatccg tccatgcagt atcgttcgat ggagtgtaat
     6901 gaattaccat atcaccggca ttaatcgggt tgagattaat gcgaacctct gcaatatctc
     6961 cccaaccgtt cggatctgct ccttgaacgc gcaagtggta ggtattgcca gcgtacatcg
     7021 tagtgttcgc gctggttaag ctagtcccga aatcatcctg aattcggata gaagtcacac
     7081 tgggttggct actttccatt gcctgatagg ttacaagatc aaacgaaatg ccgggcccac
     7141 ccgcgccatt gactgagttt cctccgacgt cggtgcctga gacgaagagg ctaaccaacg
     7201 ggctgttcat cagaccctgg ttcgcaatat cgctgataca cgcagcgcct tgattgtcaa
     7261 tcgtgtattc tgactcgttc aatgcattgg tacgaatcaa aggaacctgc gcatattcgt
     7321 caatagtggc aattcgatcg agattagtgt cgtgatcttt ctcgacccag tagttgagtg
     7381 tgagggcatc tggagcaatc gggttatctc gagcaattac acggaaggtc tgacatgaac
     7441 ttgctggaat ccatgtgtta tctgtgagtt cacgccagtt cgccccatcc atcacgctga
     7501 tgttcactag ttgtgggggc aacgggtcca tcgataccag catacggatt gcacagtcag
     7561 aatcaggact caactccgaa ggggggcata ctgtatcgcc acccgtgaaa ttagccatca
     7621 tgaagcgata ggagcgggcg cctgccgtct gggtgggcaa ggatggcgtc caagtgaaat
     7681 caccgtcaac gaagccgttt cgacgatcga cttcattcca ctcttcagat tcaagattag
     7741 aggtgttgag ttcctcaagg acaatggaat aacttgcggg atctggagca ttattgagat
     7801 cttcaaaacg caccttgcca gtcaatacta ggctctgact actcttcaca tccatcaaat
     7861 ctgtctgctc gacaccagcc tgattataga cactgaaatc agtaatacct gcatcattct
     7921 ctactgcatt ccccactgta ggagagaggg gggcagcagc aggtaggcct atgactccgc
     7981 tgtcactaat cgaggatgca taaatcatga ctgattgcgt atcatcccaa tctgatgaga
     8041 cacggaagcg ccagttaacc tgcattgcac ttgttgcaga cggcgcactt acagacacag
     8101 acagatcgat accatcaaca gggtcactga cctcccagaa tgtatcattc gaaatggtat
     8161 attgtagctc gatattcccc cgtggagatt ccatcaacag agaagcacct gcaatggcct
     8221 gtccctgagc agacacagag tgtgttgtta caatctcgta gatgttcccg tcatcgtata
     8281 atccggtgaa accatttgtc agagaaatag tactcgaatg gcccatactt gtcgtaatac
     8341 tgagggtatc aagtaagatt gatccacctg tagcggaggt gaatttcaat ggaatattca
     8401 catttcctgt agttgcagta cccatagcaa caccctgtga tagttcacgg gccagatagt
     8461 tcccatctgt aatgacacgg ctccaatcgt agttgacgac aaggtccgtg aaggtaatcg
     8521 actgccccgg agtcgcattt tgactagcca ccttcatcct gaactgaatc cattcattac
     8581 cgaaatcatc tacatcggag gttggaacga ctgatgaatc gtagtcaagg agagtgttga
     8641 gtgcatccgc aaaatcactg agaggatctg aaataatctg tggactcagt tgaggtaaat
     8701 cctcaatcgt attcaggaac tcttcttgag cagcagcagc cacatagata tcaacatcct
     8761 caatttgatt ctgcatgaag ccgatttggg catttgtcac atcggctcct cttggaagca
     8821 tgaaagtagc accttgacca actcctccag cggtgacgct gactgttgag gtatcagatc
     8881 caatggatac accccccact gatcctgtac ggtattgggt ctgttcgccc agtgcaccaa
     8941 aggctggctc gatgataccc cactcaatat caccatcacc tgctacatcg aggcggacct
     9001 cttccgcatg gtgggcaaag cgaagatcag catggactcc agtgacttca cactggacac
     9061 tggagtagtt cacgaggagc ccgaaaccat tggtcatcgc agtgaggtca ttccaaactc
     9121 cagggttcaa actaatcatt ccaactcctc ccgcagcagc agaattgctt ggaataagcg
     9181 ataccgccgg tgtattggca gggcaatcat cggagataat cggtcttatc gcagtaattg
     9241 gtttagcaaa tgtggaacgc tctgaaggcg gattgtagga ctcgtccacc catactggtg
     9301 aaatccccaa accggatgga cttgaagggc tacttgtcca cgaaccaggt tgctggtatc
     9361 cattctcacc gaaaaccatc gctgaagtat tgaatccagt agtataccgt gtcccgatat
     9421 tgaacccgaa gagttcaggt gaattgagct gattggctcc tgaattgaaa ttgaatctga
     9481 gatctattgc ggcatggtca ccagtatcaa tatcccagag ttctataatc gaaccactca
     9541 ggccagacat cgaattacca tgacgatcgg cgatagtgtt cgtagttccc ggttcaagca
     9601 cgtcgacagt caactgtcca tcacctgtga cttctgcttc catattgagg aaaccgaacc
     9661 cattaggaga ttctccacct tgtgcatcag tattggagaa cgttctgaaa gtaacagagc
     9721 cagaagaggg taatgcatct ccaactcgaa gaccatcgat ataccagcct tgaagatccg
     9781 cagaaacagg tgggtcactg atgtcgttct tctcaagaac gaacttcaga cgaacatatt
     9841 cggtctcata gcttgagagg tc
//
LOCUS       DUKB01000177           14079 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_53550, whole genome shotgun sequence.
ACCESSION   DUKB01000177 DUKB01000000
VERSION     DUKB01000177.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 14079)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 14079)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14079
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_53550"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /gene="tadA"
                     /locus_tag="HA345_05950"
     CDS             <1..1097
                     /gene="tadA"
                     /locus_tag="HA345_05950"
                     /inference="COORDINATES: protein motif:HMM:NF012652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HIH84933.1"
                     /translation="FQVGDLRVTCASPPFSDAWEITVVRPVARLSIADYELQQDLIDR
                     LSDHHRGMFVVGKPGSGKSTFAAAIADHLDLEIGAMVKTMEAPRDLQVAQRITQYAPL
                     EGDLEKTAEIIFLVRPDFVIYDEVRRANDFRIFSDVRLAGVGLLGVTHANSGLEAIQR
                     LVGKVELGLISQVLDTVVHIERGKVHEVLELKMVVRAPSGMEAELSRPVIEIRRFPDG
                     TLTHEMFAFGSEIAVVPVSADGESNQSSPIRRLAAEELRRLIRGFTGVRVHHVQFTGE
                     SNAEVYVDDSAIGSVVGQGGDSVRALEEEVGGIRLKIKGYKELPHTLRREIDQLSHLQ
                     DHGFDPSTASRSWESSKGGRKGKRKKSRRR"
     gene            1154..5650
                     /locus_tag="HA345_05955"
     CDS             1154..5650
                     /locus_tag="HA345_05955"
                     /inference="COORDINATES: protein motif:HMM:NF014466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84934.1"
                     /translation="MRTSVALVALMVLPLLLQIPELPEYLEEDELTFPSVGATNPLGW
                     EWVNKDTDAGFTWVKEVEGQSNGSFYVAGVFLGGSLNLEGINGGFHTPKSILNHGGRD
                     VFVGHYTYNSGNGFWSWLSVFGGSEDEHVEDMILDSTGDLIVVGSYNSSSISVAGNSG
                     TLTLNNQGGRDGYAFKIDGSTGAYDWINSIASNGFDNITGVTETSVGDLAFCGWTSSA
                     SVIVNGTMSNGSGTDNDMFVAWSSSSGVWDQLRRYGSTGKEEAHDCAADGNDRIMLVG
                     EFSSTSLILDQTTIVHGGGTGSDSIVMRVARTGVEWVRKPIATANDRAWSVDVDSAGN
                     VFVAGEHFYNNSGSHEITWGSIRITNGRNHQMAYVVKFSNVGAIGWAIRSNFCSSTSS
                     YYSNHQQWNPTVTVVDSNIAFGLHSKGDNRLCFSGSSSSGQFYGNYYHSAYFLGISST
                     GSISTSYYRHSSNSHIFDVDAIDNPSGTDFAFGAWSSLPRQYGDFTGSDTTSLSTPAS
                     NAPFSHMVIHQWESSTSNPGPNSNLEGVEIGFTSSEWVVDQERINSTHSAILVQGESQ
                     GLRFGDLTAGGTNQENVWIATVNETGAWTDLGHFWFGEDRDESNIPFGIGMTTAPNGT
                     VWVVVYWRGFLHVPGVVSITSGWGVHVLSWVPGSGWSSADKLEGYQYSYYVPFDIVTD
                     GNGDVWVLGECYSTVTIAGNSFSGSNQHQVCVAQRSSSGWIGVARSYSQYYPRVDAIA
                     GHPNGGAVLWVRGDYWNRPSGGTQSISSSDAGGLVRLHGNNRTMWLWDWPTCQGGSGC
                     NDVESIDVRANGDIVIGGYFRNSISFSNCCSVNSGGGYDGYMALWNASNHRWDWSIAL
                     GGTNDDYLYDVRFIGNGSIAGVGEKSGVVSVGLTTLSNAGTGFVAMASDQGTWSWAQQ
                     PVGDTRIRTVIPAGNGSIEVAGELLHDSNIRTFGLDSLRSSDGEDLFVSRMSADQDAD
                     GITNNRDNCISIYNPPQADFENDGIGDICDDDDDGDGVLDVDDSCPMGAIGWTSLAVS
                     DHDSDGCADAAEDDDDDDDGILDIDDSCLYGALNWTSTASNDHDQDGCQDSVEDTDDD
                     NDQVYDNPDACPRGETGWISNSDTDLDGDGCLDGVEDDDDDGDGVDDDQDTCPTGATG
                     WVSQSSNDNDGDGCLDSQEDDNDDEDDFPDVDDSCPNGTIDWRSGSITDYDGDGCYDA
                     DEDLDDDADGVPDTSDNCPRGVIGWRTNPTIDLDQDGCHDYNEDWDDDGDGVNDLDDT
                     CPRTNLGLSVNTEGCAQGEVPQGSGDGGGSVTYVNNTYQNDTYVNNTYQNDTYVNNTY
                     QNETSQNDTYVNNTYSNSSTSIAYENETFQNMTYLNETTVDGEANETPAESTEQASDS
                     GFSFPLLEILFLILLGTLVLIQTLAFRRRPEPMSTFTDPHDHTSIFNDNNPDQENSHE
                     ELSTDVVEEIIEESDTKIDSPPLDSNGTVDESGFEWIEWPEGSGINHYRKAESQDTWE
                     IWHS"
     gene            5696..7285
                     /locus_tag="HA345_05960"
     CDS             5696..7285
                     /locus_tag="HA345_05960"
                     /inference="COORDINATES: protein motif:HMM:NF012346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84935.1"
                     /translation="MSEGQGAPPVVIVRPETNVTSGTAVQEKLISAAQAFADILKPTL
                     GPRGLDKMLYKTDGTTAVTNDGAKIVAELMVRHPAAKAFVSLAESQENACGDGVTRTL
                     LVAGELLVEADRLIRMGLHPLTIVDGYLAAMKVVEESIHEFSKSIDDIEGEPILSVAK
                     TALRGKSADQDLDRFAQIIFQATRQITRETSEGLRSEAEDVSMFLLGRKGIKDSHLLH
                     GIQVRRRVLLDRLEGERHNLRVAVIHGDLKPREMHRDVEIEVENPEQLSDFITEENER
                     KVALVENLLRLDVSAIFVSGEIDRDILHHLVDEGVFVADGFDDSELRNLCGVTQANLS
                     SSVHHLISDDIGYAESIHCERRSASDRVEDEIVVIGGERAEIVTIAVGGTEGVAAEEV
                     VRGLHDALRSTTLATRTNSLLPGAGATHIRLAMMVRAAAEQRSDRAKLAMNAFSRALD
                     IVPATLVENAGGDSLDAILALRTSSLEEQVFGIGMDGNVAPVPSDVLHPTDTILNGII
                     GATETACSLLRIDQVISARGD"
     gene            7333..8961
                     /gene="purH"
                     /locus_tag="HA345_05965"
     CDS             7333..8961
                     /gene="purH"
                     /locus_tag="HA345_05965"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: protein motif:HMM:NF002049.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HIH84936.1"
                     /translation="MGVDATSNRPRALISVYDKSGVVEFAQKISDMGWEILSTGGTAR
                     LLKEHSIDVVDVTDVTGHPEVFDGRVKTLHPAIHAGILARGSNLADLDTLDSLGYSRI
                     DLVCVNLYPFESVATESPPVEEDVLLEMIDIGGPTLLRAAAKSHQDVLVVPRKKYYRE
                     VIDALEEANHDPSGVSMDLRQRMAISAFQRTAGYDVMVATTLAERLSVNIESPEGIPA
                     HLLVSGGKANHLRYGENPHQAAGWFDSSSTSISSTGLSSAVQHGGKELSFNNYLDLDA
                     ALRFARSLIGSEWSSLPHTCVIIKHTNACGVASSTDQVSAWKDALASDSESAFGCVIA
                     FTTVVTQLTAEAIGGHFVECIIAPGFEPGAMDYLSQKKNRRLLTLDSFLPLTDEVRYR
                     QLDGVWLAQIEGVPEIDWDEAECVTSIEMESNDRNLARFGVAVCAQVKSNSVVLVDRT
                     PTGFATVGIGPGQTSRVEAVRIAARRAGVRAKGSMMVSDAFFPFRDGIDAANEIGVTS
                     IVQPGGSIRDQESIDAANEYGMSMIFTGMRLFRH"
     gene            complement(8958..9464)
                     /locus_tag="HA345_05970"
     CDS             complement(8958..9464)
                     /locus_tag="HA345_05970"
                     /inference="COORDINATES: protein motif:HMM:NF016211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 domain-containing protein"
                     /protein_id="HIH84937.1"
                     /translation="MTQSARLESVDAIVEKYAVSSNPVRRIIYVTIGCIFLVFAGIGV
                     LLPGWPTVSWAVPAAFLFSLSNERLFRYTLTNRFFGPAMFEYYATGKTLPSHVKYIIT
                     MMIAAMSSLSSYFVWNVSTRGADGQLLQPNTWSGADEFALGSLTIIGVGFLGIMYVLL
                     KVNTRNSD"
     gene            9560..10231
                     /locus_tag="HA345_05975"
     CDS             9560..10231
                     /locus_tag="HA345_05975"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF004194.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HIH84938.1"
                     /translation="MGGPRIGTPSSPLRLAVLISGGGSGMQALLDYESKIASPCFTTC
                     VVVSDRKGAGGLSITAEYGIAAEVVSLEDITVDAIPSRRRAHEMALQLVLERYEVEGI
                     ILSGYMRILTANFLQDWSGRVLNIHPSLLPRHPGAHAHHDVLTSGDTVSGCTVHFVDS
                     GMDTGAIIAQSEVPVHRDDTIEMLQERVKVVEHHLYPNVIADFAAGRFRLEGETVIWE
                     NLHDD"
     gene            complement(10203..10751)
                     /locus_tag="HA345_05980"
     CDS             complement(10203..10751)
                     /locus_tag="HA345_05980"
                     /inference="COORDINATES: protein motif:HMM:NF024214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HIH84939.1"
                     /translation="MGVDKAMLKINDVPMLEISVQNLEKSGAKSIHILVKDERQAEIY
                     RSMLGQRVSFHLDPPDTKGPWEVLVAILQQLKKEEIVQLLPVDAPWFDDIAIGLLQRQ
                     MELVPESDGALPKNEHGSHPLLAQFHSGKILELLLSQPPQSLRSLFKEGNLQFVNTDD
                     FHKAGCHPNCLLNLNRREDFPR"
     gene            complement(10799..11008)
                     /locus_tag="HA345_05985"
     CDS             complement(10799..11008)
                     /locus_tag="HA345_05985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84940.1"
                     /translation="MGTPLVPAGEPVVEPVLEWTICRDAEDIRTLMGWITSSTKRRER
                     EALIVRTRELLAEIEHAAQRLDELR"
     gene            complement(11035..11700)
                     /locus_tag="HA345_05990"
     CDS             complement(11035..11700)
                     /locus_tag="HA345_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84941.1"
                     /translation="MTDPLDDHLEQVTPKMLKRPKRLMKHLREAYPIGVPALAMKSTT
                     DRIGAHAGYSFHLGTPEPELQRIASWILTRMEGMDEAIETLIGRLWLRFGREDLVLSS
                     LLLANLSDADRNPEWRWLTLVDLVKHRRKKFGSIPLEVMLLHIEEMTRASRMEIPLNL
                     LERILNDDDSMQALGILAAHRRFREEGISEHILLALNNSNLPEGDGLLRRIRDALLSS
                     TEA"
     gene            complement(11705..12127)
                     /locus_tag="HA345_05995"
     CDS             complement(11705..12127)
                     /locus_tag="HA345_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TerB family tellurite resistance protein"
                     /protein_id="HIH84942.1"
                     /translation="MGSAPETLSVFSAVVETVLNDGVLTQEEKRLIITIGRELELDDG
                     DPVRVYNAVLEGEAITGGRKLTRNERVQVYRKSWRTVNFNDDESIDEAAVMKRLREVL
                     DFSKKEADELVKPLRSTQEEPVEDTSSISSRFRRMFGR"
     gene            12347..13513
                     /locus_tag="HA345_06000"
     CDS             12347..13513
                     /locus_tag="HA345_06000"
                     /inference="COORDINATES: protein motif:HMM:NF003113.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HIH84943.1"
                     /translation="MAEPKYVIEATIRTDGTVQRKDVVGAIFGQTEGLLGESLQLRAM
                     QRKGRIGHVDVELQNQRGKVQGIIRLPTMIDQVTTAVIAAALETIDRIGPCQANIKVQ
                     KIENVRSAKRTQVVDRAKNLLLNLVNSGAEESSSILDEVRSVLTLGTETNHHGMTCGP
                     NAIESNALIIVEGRNDVRNLLKHGIKNAIATMGSGITEELVELAKKKSNVTAFMDGDR
                     GGTLLLVELEGALGNKLTHVALAPESREVEHLEGKVITKCLNQKTEAKKILGRLKADL
                     EKQDDEVLGKKEDLAPVVVPDAVRDWKESFEGLAKNKACFVLEDGELSEPLGASKLAE
                     GAENVSGAVGMLFNGKITSRTLEIAKSAGVPHILASSVNEDTMEGVEVFVLSDL"
     gene            complement(13514..>14079)
                     /locus_tag="HA345_06005"
     CDS             complement(13514..>14079)
                     /locus_tag="HA345_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84944.1"
                     /translation="EEDSKVPTNILKETHQSPNPRDRPFITKQDIEDILPDYDGEYIH
                     LQKNGLSLRERLGIDKEDPLIIESSRGRDLRIQRLLRLIPLIETKFDQSEWTGVVEGL
                     EPLLDNIDQWIRVRSEHRNCWKNEEGIIQRMDRLLSVLDGVPGPGIQLPIGFDEAHLP
                     ETIEDITTEIEILARQKIRIAGGIQTA"
BASE COUNT         3681 a         2987 c         3546 g         3865 t
ORIGIN      
        1 ttttccaggt aggagatctt cgcgtgactt gcgcatcacc tccattctca gatgcatggg
       61 agattactgt cgtgcggcct gttgctcgat tgagtattgc tgattatgaa ttgcagcagg
      121 acctcataga tcgtctttca gatcatcatc gtggcatgtt tgttgttggt aagccgggtt
      181 caggaaagag tacttttgct gcagcgattg ctgaccacct cgatctagag attggagcca
      241 tggtaaagac aatggaggct ccacgtgatc tccaagttgc tcagcgaatc actcagtatg
      301 cgccattgga aggtgacctt gagaagacag cggagataat cttccttgtc cgtcctgatt
      361 ttgtaatata cgacgaggtc aggagagcta atgatttccg catcttttct gacgttcgcc
      421 ttgctggtgt aggtctcctt ggtgttactc atgcgaatag cggtcttgag gcaattcaga
      481 ggcttgtggg caaggtcgaa cttggattga tttcacaggt actcgatact gttgtgcata
      541 ttgagcgagg taaggtgcat gaagtccttg aactgaagat ggtagtccga gcaccttcag
      601 gcatggaggc agaattatcc cgcccagtta ttgagattcg tcgcttccct gatgggacac
      661 taacccatga gatgtttgct tttggttcag agattgcagt ggttcccgtg tcagcagacg
      721 gagaatccaa ccaatctagt ccaattcggc gacttgccgc tgaagaatta cgtcgcttga
      781 ttagaggttt tactggtgtc cgcgtacatc atgttcagtt cacaggagag tcaaatgcag
      841 aagtgtatgt tgatgattca gcaatcggct cagtagttgg tcaagggggc gattcagttc
      901 gagctctaga ggaagaagtt ggaggaattc gtttgaaaat caagggttac aaagagctac
      961 ctcatacgct tagacgcgaa attgatcagc tttcacatct acaagatcac ggatttgacc
     1021 cttcgacagc ctcccgttct tgggagtcgt ctaaaggtgg acgcaaagga aagagaaaga
     1081 aaagtcgtcg ccgttgaatc ttgaatcaac atcatcgggt gcattgatat tcttgattgc
     1141 ctactacggg ctgatgagaa cctctgttgc gttggtcgcc ttaatggtcc tcccccttct
     1201 tcttcaaatt cctgaactcc ccgaatatct tgaggaagat gaacttacat tcccatcagt
     1261 tggtgcaacg aaccccttag gttgggaatg ggtcaacaag gatacagatg cgggttttac
     1321 ttgggttaag gaagtcgaag gacagtccaa tggttcattc tatgttgcag gagtttttct
     1381 tgggggctca ttgaatttag aaggaatcaa tggcggtttt catacaccta agtctatatt
     1441 gaatcatggc ggaagagatg tttttgttgg gcactatact tacaattcag gtaacggttt
     1501 ctggtcttgg ctttctgttt ttggaggctc tgaggatgaa cacgtagagg acatgattct
     1561 tgattcaaca ggagatttga ttgttgtagg atcatacaat tcatcttcca tttctgttgc
     1621 aggaaattct ggaacattga cattgaataa tcaagggggt cgagacggat atgcattcaa
     1681 gattgatggt tctactggtg catatgattg gataaattca attgcgtcta acggtttcga
     1741 caatataacc ggcgtaactg agacttcggt tggggatttg gcattctgtg gttggacatc
     1801 aagcgcatct gtcattgtta atggtacaat gagtaatggt tcaggaacag acaatgacat
     1861 gtttgttgct tggagcagct ccagtggtgt atgggaccaa ttacgacgat atgggagtac
     1921 gggcaaagag gaagcacacg attgtgcagc agatggaaat gatcgcataa tgcttgttgg
     1981 tgaatttagt tccacatctt tgattcttga tcaaaccaca attgttcacg gcggcggaac
     2041 gggctcagac agtatcgtga tgcgagttgc ccgtaccgga gttgaatggg tccgtaagcc
     2101 aattgctact gcaaacgaca gggcttggag tgtggatgtc gactcagccg gaaatgtgtt
     2161 tgtagcgggc gagcatttct acaacaatag cgggtcacac gaaattacct gggggtcaat
     2221 tcgaattact aatggccgaa atcatcagat ggcctatgtt gtaaaattct caaatgtagg
     2281 agcaattggt tgggcaataa ggtctaattt ttgctcctca acgtcaagtt actattctaa
     2341 tcatcaacaa tggaatccaa cagttactgt agtcgatagc aacattgcat tcggacttca
     2401 tagtaaaggc gacaataggt tatgtttcag cgggagctcg agctctggac agttctatgg
     2461 aaattattat cattcagcat actttcttgg gatctcaagt acggggtcaa tctcaacgtc
     2521 ctattaccgc cattcaagta attctcatat ttttgatgta gatgcaatcg ataatccgag
     2581 tgggacagat tttgcctttg gagcatggtc gagcttacct cgacagtatg gggattttac
     2641 aggttcagat acaacctcac tttctacccc cgcgtctaat gctcctttct cccatatggt
     2701 aatccatcag tgggagtcat ctacatccaa tccaggccct aattctaatc ttgagggtgt
     2761 agaaataggg tttacctcat cagaatgggt tgttgaccaa gaaagaataa attcgacaca
     2821 ttcagcaatt cttgttcaag gggaatctca aggattgaga tttggtgatt tgactgctgg
     2881 tggcacgaat caagagaatg tttggattgc aacagtcaat gaaacaggag catggacaga
     2941 tcttggacat ttttggtttg gagaagatcg tgatgaatcc aatattccat ttggaattgg
     3001 gatgactact gcccccaatg gtactgtgtg ggtagttgta tattggcgcg gcttcttgca
     3061 cgttccaggt gtagtttcaa tcactagtgg ttggggcgtt catgtgctta gttgggttcc
     3121 agggagcggg tggtcttcag ctgacaaatt agaaggatat caatactcat actatgttcc
     3181 atttgacata gttaccgatg gaaatggcga tgtatgggtg ttaggtgaat gttattcgac
     3241 agtgacaatt gctggaaatt ccttttcagg ctctaatcaa catcaagtat gtgttgctca
     3301 acgttctagt tcgggttgga taggagtagc acgttcatac tcacaatatt atccaagagt
     3361 ggatgcaatt gcaggtcatc caaatggtgg cgcagtactt tgggttcgag gagattattg
     3421 gaatcgtcct agtggaggaa ctcagagtat ttctagctct gatgcaggcg gccttgttcg
     3481 acttcatggt aataatcgaa ctatgtggtt gtgggattgg ccgacttgtc aaggcggatc
     3541 aggatgtaat gatgttgaat caatcgatgt tcgagcaaat ggagatattg taattggtgg
     3601 atattttaga aattcaatct cattttccaa ttgctgctct gtgaattcgg gtggcggata
     3661 tgatggatat atggcattat ggaacgcttc aaaccataga tgggattggt caattgcact
     3721 tggcggaaca aatgatgatt atctctatga tgttcgtttc ataggcaatg gaagtattgc
     3781 aggagtgggt gaaaagagtg gtgttgtaag tgtcggttta accactctgt caaatgctgg
     3841 aactggtttt gttgcaatgg cttcggatca aggcacttgg tcctgggcac aacaaccagt
     3901 aggggacaca aggatacgaa cagtcattcc agcaggtaat ggcagcatcg aagtagctgg
     3961 tgaactactc cacgatagta acatacgaac atttggtctt gattctttaa gatcgtcaga
     4021 tggagaggat ttgttcgttt cacgaatgag cgcagatcaa gatgctgatg gcattactaa
     4081 caatcgtgac aactgtattt cgatttacaa tccaccccaa gcagattttg agaatgatgg
     4141 aattggcgat atctgtgatg atgatgacga tggagatgga gttctcgatg tcgacgattc
     4201 ttgtccgatg ggtgctatcg gatggacatc attggcggtc tcagatcacg actcagatgg
     4261 atgtgctgat gcagccgaag atgatgacga tgatgatgat ggcatcctcg atatcgacga
     4321 ttcttgtttg tatggggcgt tgaattggac atcaacagcg agtaatgatc acgatcagga
     4381 tggctgtcag gattcagttg aagacacaga cgatgacaac gatcaagttt acgataatcc
     4441 ggatgcttgt ccacgtggtg agacagggtg gatttcgaac tcagatacgg atcttgatgg
     4501 cgatggttgt ctcgatggag ttgaggatga tgatgatgat ggcgatggtg tagatgatga
     4561 ccaagacact tgccctactg gtgctacggg atgggtatca caatcatcca atgacaatga
     4621 tggcgatggg tgccttgatt ctcaggaaga tgataatgac gatgaagacg acttcccaga
     4681 tgtggatgat tcatgtccga atggaacaat cgattggcga agtggttcca taactgacta
     4741 tgatggcgat ggatgctacg atgcggacga agatctcgat gatgacgcag atggcgtgcc
     4801 agatacctca gacaactgcc cccgtggagt catagggtgg cggacgaatc caacaatcga
     4861 tctcgatcaa gacggttgtc atgattacaa tgaggattgg gacgatgatg gtgatggagt
     4921 aaacgatctc gacgacacat gcccaagaac caatctaggt ttgtcggtaa ataccgaagg
     4981 ttgtgcgcaa ggagaagttc cccagggctc aggagatggt ggcggcagtg taacgtatgt
     5041 gaataatacg tatcagaatg atacctatgt gaataatacg tatcagaatg atacctatgt
     5101 gaataatacg tatcagaatg aaacatctca gaatgatacc tacgtgaaca acacttactc
     5161 aaattcctct acttcaattg catatgaaaa tgaaacattc cagaatatga catacctcaa
     5221 tgaaactaca gtagatggtg aagcaaatga aaccccggca gaatcaacag aacaagcgtc
     5281 tgattctggg ttttcatttc ctttgttgga gatattattc ctaattctct tgggtacatt
     5341 ggttttgatt caaaccttag cgttccgaag acgcccagaa ccaatgtcta cattcacaga
     5401 tcctcacgac catacatcga ttttcaatga taataatccc gatcaagaga attcacatga
     5461 agaattgtca actgatgtgg tagaagaaat aattgaggaa tctgacacca agattgactc
     5521 cccacctttg gattctaatg ggactgtaga tgagtcggga tttgagtgga tagagtggcc
     5581 ggagggtagt ggaattaatc attatcgaaa ggcagaatct caggatactt gggaaatatg
     5641 gcactcatga gattcgcggt gacttcatga gaaggacccg gttcagacac cctgcatgtc
     5701 cgaaggacaa ggggccccgc cggttgtgat tgttcgtcct gagacgaacg tcacaagtgg
     5761 aacagcggtt caagagaaat tgatttctgc agcacaggct ttcgcagata ttctgaagcc
     5821 cacactgggt ccgcgcggcc tcgataagat gctctacaaa acagacggaa cgacggctgt
     5881 aaccaatgat ggtgccaaga ttgtcgcaga attgatggta cgccatccgg ctgccaaggc
     5941 ctttgttagt cttgcagaat cccaagagaa tgcttgtggt gacggggtga ctcggacgtt
     6001 acttgtcgct ggcgaacttc tcgtcgaagc agaccggttg attcgcatgg gtttgcatcc
     6061 cctaactatt gtggatggat atcttgctgc aatgaaagtg gttgaggaat caattcatga
     6121 attttccaag tcaattgatg atattgaagg cgagcctatc ctctcggttg caaagacggc
     6181 gttacgtggt aaatcagcag atcaagatct cgatagattt gctcagataa tattccaggc
     6241 aacacgtcag ataactcgag agacatctga aggactacgg tctgaagctg aagatgttag
     6301 catgtttctt ttaggtcgaa aaggaatcaa agatagtcac ctacttcatg gtattcaggt
     6361 tcgtcgccgc gtcttgttgg atcgccttga aggagaacgt cataatcttc gtgtagctgt
     6421 tatccatggt gatctcaagc ctcgagaaat gcatcgtgat gtggagattg aagtcgagaa
     6481 tcctgaacag ttaagcgatt ttatcaccga ggaaaatgaa agaaaagtcg cattagttga
     6541 gaacctcctt cgattagatg ttagcgccat ttttgtctca ggtgaaatag atcgcgacat
     6601 cctgcatcat cttgttgatg aaggcgtttt tgttgctgac ggcttcgatg attccgaact
     6661 tcggaatctc tgtggagtta cacaagcgaa cctgagttct tcagtccacc acctaatatc
     6721 cgatgatatt ggttatgcag aatcaattca ttgtgagaga aggtcagcaa gtgaccgtgt
     6781 tgaagacgag attgtcgtaa ttgggggaga gcgtgcggag atcgtgacga tagcggtcgg
     6841 tggcacagaa ggcgttgcgg ccgaagaggt tgtacgtgga cttcatgatg ctcttcgaag
     6901 tacgactttg gcaacgagga ccaactctct tcttccagga gcaggtgcca cacacatccg
     6961 tcttgcaatg atggttcgtg cagcagcaga acaacgctca gaccgagcaa agctagcaat
     7021 gaacgctttc tctcgggctt tagatatcgt tccagcgaca cttgtcgaaa atgcgggagg
     7081 tgattcattg gatgctattc tcgctctacg tacctcttcc ttagaagaac aggtatttgg
     7141 tatcggtatg gacggtaatg tagccccagt cccctccgat gttctacatc caacagacac
     7201 gatactcaac ggaatcatcg gtgctactga gacggcctgc tctctactcc gaatcgatca
     7261 ggtaatttca gccagaggag actgaatcac caatcttcaa gtggcctatc ctcccgttga
     7321 ggtggggtta cgatgggagt tgacgccacc tctaaccggc cccgggcact aatcagtgtc
     7381 tacgacaagt caggagtggt tgaattcgct cagaagatta gtgatatggg ttgggaaatt
     7441 ctgtcgacag gcggcactgc ccgtttgttg aaggagcata gcatcgatgt cgtggatgtt
     7501 acagatgtga caggccatcc agaggtattc gatgggcgtg taaagactct ccatcctgcg
     7561 attcatgctg ggattctagc cagaggttcg aatttggctg atctcgacac tcttgattcg
     7621 ttaggctatt ctcggataga tcttgtttgt gtgaacctct atccgtttga gagcgtggct
     7681 acagaatctc cacctgttga agaggacgtt ctgcttgaga tgattgacat tggtgggccg
     7741 acgctgttac gtgctgctgc gaagagtcat caggacgttc ttgtggttcc acggaagaag
     7801 tactacagag aggtgataga tgcccttgaa gaggcgaatc acgatcctag tggagtttcg
     7861 atggatctcc gccagaggat ggcaatatct gcattccagc ggactgcagg gtatgatgtc
     7921 atggtggcta ctaccctggc tgaacgcctt tcggtcaata ttgaatcccc agaaggaatc
     7981 cccgcgcact tacttgtttc aggaggaaag gccaaccatc ttcgatacgg tgagaatccc
     8041 caccaagcgg caggttggtt tgactcgtca tccactagca tttcatctac aggtctttct
     8101 tccgcggttc aacatggagg aaaagaactc tcattcaaca attatctcga tcttgatgcg
     8161 gctcttcgtt tcgctcgttc tcttattggt tctgaatggt caagccttcc acatacgtgt
     8221 gtgatcatca agcatacgaa tgcctgtggt gttgcatcat cgacagacca agtttcagct
     8281 tggaaagacg cccttgcctc agattccgaa tcggcctttg gttgtgtaat cgctttcaca
     8341 acagttgtaa ctcagttgac ggctgaagcc atagggggcc attttgttga atgcataatt
     8401 gcacctggct ttgagcccgg tgctatggat tatctttcac agaagaagaa tcgccgtttg
     8461 ttaacactag actcgtttct accactcact gacgaagttc gttatcggca gttagatggt
     8521 gtttggttag cccaaattga aggcgttcca gagatagatt gggatgaagc agagtgcgta
     8581 acttcgattg aaatggaatc taacgacagg aaccttgccc gatttggtgt tgcggtatgc
     8641 gcccaggtga aatccaacag cgtggtactt gtggatagaa ctcctacagg gttcgctact
     8701 gttgggattg ggcccggcca gactagtcgt gttgaggcag ttcgtatcgc ggctcgccgt
     8761 gcaggggttc gggcgaaagg atctatgatg gtatcagatg catttttccc attccgagac
     8821 ggcatagatg ctgccaatga aatcggagta acatccattg ttcaaccagg tggttcaatt
     8881 cgcgatcagg aatcaatcga tgcagcaaat gagtacggaa tgtccatgat attcacagga
     8941 atgcgattat tccgtcatta atcggagtta cgtgtattca ctttgagaag cacatacata
     9001 atcccgagaa aacccactcc aatgatggta agcgagccaa gagcgaactc atcggcacca
     9061 ctccatgtgt taggttgtag cagttgacca tctgcgccac gtgtagatac attccagacg
     9121 aaatacgacg acagagagga catagcggca atcatcattg tgataatgta ctttacatga
     9181 gaaggtaacg tcttccctgt tgcataatat tcgaacattg caggtccaaa gaatcgattt
     9241 gtcaaagtgt accggaagag acgttcgttt gagagtgaga ataagaatgc tgcaggtacg
     9301 gcccatgaga ccgttggcca accgggcaga agaactccga tgccagcgaa gacgagaaaa
     9361 atacaaccaa tagtgacgta gataatacga cgtacaggat tacttgatac agcgtatttt
     9421 tcgacgatag catctacgct ttcaagccgg gccgattgcg tcatctattc cggcccgtgg
     9481 catggtcatg gtaaaatcat gcgttcgcaa atcttgcatt tgtccatata ctcaaggcga
     9541 gaatgcccat ccacctttca tggggggccc acggatagga actccatcct ctccattgcg
     9601 ccttgcggtt ctgatttcag gcggaggatc tggtatgcag gcattactcg attacgaatc
     9661 taagattgct tcaccttgtt tcaccacatg cgtagtggtc agcgatcgca aaggtgccgg
     9721 ggggctttct attactgctg aatatggtat agctgctgaa gtagtatccc tggaagacat
     9781 tactgtcgac gcaatccctt cacgtcgcag agcccacgag atggctttac aattagttct
     9841 tgaaagatat gaggttgaag gaataattct ttcaggatac atgaggattt taacagctaa
     9901 tttccttcaa gattggagtg ggcgagtcct caatatccac ccctcacttc ttcctcgtca
     9961 tcccggtgct catgcacatc atgatgttct tacatccggt gatacggtct caggatgtac
    10021 ggtgcatttt gttgatagtg gaatggatac cggggcaatc attgctcaat ctgaagttcc
    10081 agttcacaga gatgatacta ttgagatgtt acaagaacga gtcaaggtgg tagagcatca
    10141 cctatacccc aatgtgattg ctgactttgc agcaggaaga ttccgtctgg aaggtgaaac
    10201 cgttatctgg gaaaatcttc acgacgattg agattcaaca aacaattagg atggcaacca
    10261 gccttatgaa aatcgtctgt atttacgaat tgtaagttcc cctctttgaa cagcgatcgt
    10321 agcgactgtg gaggctgcga tagaagcaac tccaatattt ttccagaatg gaattgagcc
    10381 aatagtggat gacttccgtg ttcattcttt ggtaatgctc catcggattc aggcacgagc
    10441 tccatctgtc gttgcagaag ccctattgct atatcatcga accaaggtgc atccactggt
    10501 agaagttgaa caatttcttc cttctttaat tgttgaagaa tggctacgag gacttcccat
    10561 ggaccctttg tatctggcgg atcaaggtgg aatgatactc gttgacctaa catgcttctg
    10621 tagatctccg cttgcctctc atcttttacg agaatatgga ttgattttgc accggatttt
    10681 tctagatttt gtactgaaat ttcgagcatc ggcacatcat taatcttcaa catcgctttg
    10741 tctacaccca tccgagatga acgcccacct gcaaggatca atcctcgaat gccctcacct
    10801 acctgagttc atccaatctt tgtgcagcat gctcaatttc agctagaagt tctcgtgttc
    10861 ggacaatcag ggcctctcgt tctcggcgtt tggtagagga ggtaatccac cccatcagag
    10921 ttcgaatatc ttcagcatct cggcaaatag tccattctaa cacaggttcg accacaggtt
    10981 ccccggctgg gacgagaggt gtacccatgg tcgagtcgtt aaccctagaa cctttcatgc
    11041 ttccgtgctt gagagcagcg catcgcgaat ccttctgagt agaccatcac cttcagggag
    11101 gttcgaatta ttgagagcga gaagtatgtg ttccgaaatc ccttcctccc gaaaccgtcg
    11161 atgtgctgcg agaatcccca atgcttgcat tgaatcatca tcattgagaa ttcgctccag
    11221 taaatttaga ggaatttcca tacgactggc ccttgtcatt tcttcgatat gcagaagcat
    11281 cacttccaat ggaatacttc caaatttttt ccgtcggtgt ttaacgaggt caacaagggt
    11341 caaccaacgc cattcagggt tacgatcagc atctgagaga ttggcgagga ggagggacga
    11401 gaggaccagg tcttcccgtc cgaaacggag ccagagtcgt ccaatcaatg tctcaattgc
    11461 ttcatccatt ccttccattc ttgtgagaat ccaagatgca atcctctgga gttcaggttc
    11521 aggtgttccg agatggaatg aatatcctgc atgcgcccct attcggtcag tagttgattt
    11581 cattgccaag gctggcactc ctattggata ggcctctctg agatgtttca tcagtcgttt
    11641 cgggcgtttc agcatctttg gagtgacttg ttcaaggtga tcatcgagag gatctgtcac
    11701 gatgtcacct tccgaacatc cgccggaatc gggatgaaat tgaacttgta tcttcaacag
    11761 gttcctcctg ggtcgaacgg agaggtttga cgagttcatc cgcttccttt tttgagaaat
    11821 cgagaacttc tctcaatcgt ttcataacgg ccgcctcatc aattgattca tcatcgttga
    11881 aattgacagt tctccaagac tttcgatata cttgtactcg ttcattccga gtcaatttcc
    11941 tccctccagt gatggcctca ccttcgagca ctgcattgta cactcgaacg gggtcaccat
    12001 catccaactc aagttcgcgg ccgattgtga tgattagacg cttttcctct tgagtgagca
    12061 cgccatcgtt caacaccgtt tcaacaacgg cactgaacac cgagagcgtc tcaggagcac
    12121 tgcccatacc aagtgtaatc cattacctgc cttgaaggct gtccatattg tgaatgcatt
    12181 acttaccagc atttactgac ggaggtttaa tcccatatgg accggccaga accaaatgtt
    12241 cgagtcacgt tcctggccgc attgcggtct tcgtgcccgc cggatggcgg gattattccc
    12301 gcttctgcgg cacagctggg ctcgctccaa ccaaggtgga atcaaaatgg cagaaccgaa
    12361 gtatgtaatc gaggcaacca tccgaacgga tggaaccgta cagagaaagg atgtggtcgg
    12421 agcaattttc ggccagacgg agggattgct tggcgagagc ctgcaactcc gtgcgatgca
    12481 gcgcaagggc cgcatcggac acgtcgatgt tgaattacag aatcaacgag gtaaggtgca
    12541 aggcatcatt cgcctcccga caatgattga ccaagtgact actgcagtaa tcgctgctgc
    12601 tctcgaaact atcgatcgta tcggaccctg tcaagcgaat attaaggtcc agaagatcga
    12661 aaacgttcgg tctgccaagc ggactcaagt tgtcgatcgt gcgaagaatc tcttgctcaa
    12721 tcttgttaat tcgggagcag aggaatctag cagcatctta gacgaggtcc gttctgtgct
    12781 tacacttgga accgaaacaa accatcacgg gatgacatgt ggacctaacg caattgagag
    12841 caacgctctc atcatcgtcg agggccgaaa cgatgttcga aatctgttga aacatggcat
    12901 caagaatgca attgccacaa tgggttcagg aattactgaa gaactcgtgg aactcgcgaa
    12961 gaagaagagc aatgttacag ccttcatgga tggtgaccgt ggtggtactt tgcttcttgt
    13021 tgaactcgaa ggtgcattgg gtaacaaatt gactcatgtt gcactcgctc cagagagccg
    13081 agaggtcgaa caccttgaag gtaaagtaat cacaaagtgt ctcaatcaga agacagaagc
    13141 aaagaagatc ctcggtcgtt tgaaggctga cctcgaaaag caagacgatg aagtacttgg
    13201 taagaaggaa gatttggcgc cagtcgttgt gccggatgca gtccgtgatt ggaaagaatc
    13261 gtttgagggt ctggctaaga ataaggcttg cttcgtcctt gaagatggcg aactttctga
    13321 accgttaggg gcgagtaaac ttgcagaggg cgctgagaat gtttctggag cagttggaat
    13381 gttgttcaat ggtaaaatca catcaagaac acttgagata gctaagagcg ctggtgtacc
    13441 tcacatttta gcgtcatctg tgaatgaaga tacaatggaa ggcgtcgagg ttttcgttct
    13501 tagcgatcta tgattatgca gtttgtattc cacccgcaat tcgaattttc tgtcttgcta
    13561 gaatctcgat ttcagtagtg atatcctcga ttgtttcggg aagatgcgcc tcgtcgaaac
    13621 cgatggggag ttgaatacct ggtccaggaa cgccatctag gacacttaac aaccgatcca
    13681 ttcgttgaat aatcccttct tcgtttttcc aacagtttcg gtgttcactt cttacacgaa
    13741 tccattggtc aatgttatcg agcaaaggtt ccaatccttc gacaactcca gtccattcgg
    13801 attgatcgaa tttggtttca atcaagggga tcaatcgaag tagacgttgg attctcagat
    13861 cacgacctcg tgatgattct atgattaacg gatcttcttt gtctatccca agccgttctc
    13921 taagactcaa tccgttcttc tgtaagtgaa tatattcccc atcgtagtca ggtaaaatgt
    13981 cttcaatatc ttgctttgtt atgaaaggcc gatctctggg attaggcgat tgatgagttt
    14041 ctttcaggat attagttgga actttagagt cctcttcaa
//
LOCUS       DUKB01000178           10738 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_69321, whole genome shotgun sequence.
ACCESSION   DUKB01000178 DUKB01000000
VERSION     DUKB01000178.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10738)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10738)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10738
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_69321"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1046)
                     /locus_tag="HA345_06010"
     CDS             complement(<1..1046)
                     /locus_tag="HA345_06010"
                     /inference="COORDINATES: protein motif:HMM:NF012492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH84945.1"
                     /translation="MSPMVLHPFLQDEAVEARAYQLEAVNACLSTSTLLVLPTGMGKT
                     AVQWMAIAERLRTKEGRIILVAPTNALVDQQHRGLERILAISDEDRVGRLTGATPPAK
                     RKDEWALNRIIVATPQVVRNDAMKGTLDLSDITLLVVDEAHRATGNAAVAQLGDLLMA
                     ANPDALILGATASPGWNEAGVEEVCERLHLSGIHARGSTETMLQPYASNLEVEEIKVP
                     VPQELKDLARPLEGWLETIVQRERRLGHYVRSGTITVGGLNEAMRRVQAAITREERIA
                     YRSAADIGVSIRLLTLSNLLVSQGVAAARESLSRMKSRADTRGKEARPINEFISDQRI
                     RFLSDRLDSMEEIH"
     gene            1351..2442
                     /locus_tag="HA345_06015"
     CDS             1351..2442
                     /locus_tag="HA345_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HIH84946.1"
                     /translation="MADKHRPRRGSMAFSPRKRANRQHGRVKSWPTTDLDEVRVQGFA
                     GWKAGMTHVLMRDLNPYSPSAGIEVRHAVTVVEVPPIRVLAVRGYHMTPYGLQTAGEA
                     WADAEDLDENIKGLFPRFANRSKADSQIQDGIKPAKRGGRQTMPKNHDSEANFNALKE
                     HVLEEVRLLVATQPSLVSGSPSKTPEIMELGLTGGNIEARLEWGKENLGKEIIFDDVY
                     GVGQDVDVVGITKGKGFQGSVKRWGVKLLSHKNSKRRRQAGNLGDFGTGYVRSTVPQA
                     GQVGFHHRTEYNKRILSIDDSENNNITPAGGFLRYGDVKNQYVIIKGSLPGPTKRLLR
                     FRDATRSKGDVEPEKIEITHVSNSSKQGV"
     gene            2446..3261
                     /locus_tag="HA345_06020"
     CDS             2446..3261
                     /locus_tag="HA345_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008414512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HIH84947.1"
                     /translation="MKTKTIAISFSDEASASAKSGSSISLPDAFSSAVRTDLVRRAVH
                     SSRANRRQPYGHRAHEGRRKPVAGMKHSVEWWGKGRGVSRIMRRSGSREGAENPHTRG
                     GRRAHGPKVAKDWSQKLNQKERRAARDSAIAASNDSDTVRSRGHRVSEDVSFPLVIEA
                     AKGSIESFDLDKGTQRFVSMMEAIGLGEDLSRAKSGRSIRAGKGKMRGRRRKTPKSVL
                     LVVSDKSTLGRAARNLPGVDVVAVKDLSAEHLAPGGDVGRLTVYTKEAVEEMR"
     gene            3267..3560
                     /gene="rplW"
                     /locus_tag="HA345_06025"
     CDS             3267..3560
                     /gene="rplW"
                     /locus_tag="HA345_06025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014122408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HIH84948.1"
                     /translation="MVDPYDVILQPWITEKSLNARRVADPDPSGHRENNNRIEFIVRR
                     RATKADIKAAVEDLLEVKVAKVNTRIMKTGKHASVKLAEGYDAEEAALKLGAF"
     gene            3574..4296
                     /locus_tag="HA345_06030"
     CDS             3574..4296
                     /locus_tag="HA345_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012123486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HIH84949.1"
                     /translation="MGKRTRSQRRGSSPKNRVRSHRFPGRSQVPRIEDEVVTVVELIH
                     SPVHTAPLARVKMDSGEDFHIVATEGMGVGQKIAIGGNVSLRPGNITTLGSIPEGTPI
                     SNVEARPGDGGKIARSGGNSAVVESNMGDIVRVRLPSGRMKELNANCRASIGILGGHG
                     RTDKPMMKAGSAHYRAKARGKLYPSVSGVAMNPVDHPHGGGNHQAVHGPNSVPRTAPP
                     GQKVGHIAPSRTGRGRSKSKEV"
     gene            4321..4791
                     /gene="rps19p"
                     /locus_tag="HA345_06035"
     CDS             4321..4791
                     /gene="rps19p"
                     /locus_tag="HA345_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015589759.1"
                     /note="protein S19 forms a complex with S13 that binds
                     strongly to the 16S ribosomal RNA; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HIH84950.1"
                     /translation="MFRTPKIARRQARKRRSQLAGRREREFLYRGYKIEELKAMPLVL
                     PDDDPGICIADIVPAKVRRTLLNGLPREQQHLYDRVVKSERTVRTHCRSMYVMPAMVG
                     KTIAIHNGQKFVEIEVREQMIGHALGEFAPTRRGVTHTGVGVGATRGSKHVALK"
     gene            4803..5426
                     /locus_tag="HA345_06040"
     CDS             4803..5426
                     /locus_tag="HA345_06040"
                     /inference="COORDINATES: protein motif:HMM:NF012462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84951.1"
                     /translation="MARDSTKPRSGYTQLLQSTPGFHSLTTARAVNLDIHHKHCYQIC
                     RFLRNKTVGDAIDYLELVIKADGWIEDPNNPDSYKRHNEHHIRRKARAIPYVRRSRKG
                     KGGNTMAGHRKGRMGPGRFPVKASLAYIRLLRSAMNNAREQYEDLDDVEDMVITHVAA
                     HRGQVHRAFRPRARGRASPKNHYQVNLEVFLEAVAEEGDWDMDDGDF"
     gene            5438..6232
                     /locus_tag="HA345_06045"
     CDS             5438..6232
                     /locus_tag="HA345_06045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019177525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HIH84952.1"
                     /translation="MAKGSKENIVRTFINRNVERHLVKEFLLHETQDAGFGGLTFKRT
                     PEGEMIVLEAENVGRVIGTRGRIINELTRRLEQDFNLHQPKLEVGECEKPALNAQIMA
                     SRLASSLERGWFFRRAGNSTAMNIMNEGARGCLIVLSGKVSGARNRTQKFQAGHIKFC
                     GETALSTMDVGYAVAVKKLGTIGCTVAIMRPGTRLPNELIIKSREEVGLEPLPRDYEI
                     TESRVGPVSEVEDEDVVPDMSEDEMVEASVQAIAEFEAEMTGGEEE"
     gene            6237..6437
                     /gene="rpmC"
                     /locus_tag="HA345_06050"
     CDS             6237..6437
                     /gene="rpmC"
                     /locus_tag="HA345_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HIH84953.1"
                     /translation="MTHLKAREIDEMSDEAREKRLIELREELLQLRAQKSLGGSVQNS
                     GEFKQTRRSIARLLTKMNEKKE"
     gene            6444..6743
                     /locus_tag="HA345_06055"
     CDS             6444..6743
                     /locus_tag="HA345_06055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012819635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor"
                     /protein_id="HIH84954.1"
                     /translation="MASICNLCGLPDELCICQEIAKEQQKAIIRTDRRRYGKMVTIVE
                     GIDDSAIDIHDLAKTLKSRCASGGTVKGRTIELQGDHKKRASKVLEQNGYTVEVR"
     gene            6744..6998
                     /locus_tag="HA345_06060"
     CDS             6744..6998
                     /locus_tag="HA345_06060"
                     /inference="COORDINATES: protein motif:HMM:NF013985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84955.1"
                     /translation="MEIIHLPWLSRNLRVVSSADPSLEGIEGCVLDETRRTVVVQKGE
                     REIRIPKSVIRFSIDGSEAIDGRSVCQRPENRIHMNWRMK"
     gene            7000..7341
                     /locus_tag="HA345_06065"
     CDS             7000..7341
                     /locus_tag="HA345_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015492824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HIH84956.1"
                     /translation="MTTPRDIGVDVKAPEGEWDGSENCPFYGSLRVRGQIIEGLVASV
                     GMNDSIIVQNERIRSMKKYERYEKRTNRYNAHLPTCIGDIAVGDRVRIMECRPLSKTV
                     CFCVIEKEVSE"
     gene            7338..7736
                     /locus_tag="HA345_06070"
     CDS             7338..7736
                     /locus_tag="HA345_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011177451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HIH84957.1"
                     /translation="MKGISSKVTRAIPSMGTMLCVDNSGAKVVQLITVLRRGSVHRRY
                     PAGGIGDLVQVTVKRGTPEVRRKVHHAIIVRQRRPFRRADGTWVQFEDNACVLTNEKG
                     ELKGSDIKGPVSRESAERWPRVAATAKQIV"
     gene            7747..8178
                     /locus_tag="HA345_06075"
     CDS             7747..8178
                     /locus_tag="HA345_06075"
                     /inference="COORDINATES: protein motif:HMM:NF028216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HIH84958.1"
                     /translation="MVRSSQPRKQRKAAGSAPNHSQRKRVRARLQLDDNSFTTVRNIT
                     VRAGDTVKVVRGDFGFPNSKKSDGRGKRNQGKRGASGIEGEVLKVNPDGTLHIEGIAV
                     TKSDGKDEPMPVRASNVVVIKLDDSDAKRMSKLAERENRGA"
     gene            8180..8890
                     /locus_tag="HA345_06080"
     CDS             8180..8890
                     /locus_tag="HA345_06080"
                     /inference="COORDINATES: protein motif:HMM:NF003312.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4e"
                     /protein_id="HIH84959.1"
                     /translation="MGRSSHMKRLAMPRSWPLPRKTSVWVQRPDPCGHPIERCMPIGI
                     VLRDILGVAGTRREVSQILNKSVVEVDGRVVTSTGRGVGLLDILTVGDQNYMCVLDNR
                     GRLAYNPISKKNAGTKFCRLNGKTTIKGGKTQLSFHDGRTLIVDDASKDSWATGSTCI
                     IDLASGKIKDTLKAEAGASCYLIGGNHVGEITTLKEIETKRSSMPNEITFEEGYGTIE
                     DYVMVIPSVDSLPLEVTE"
     gene            8887..9411
                     /locus_tag="HA345_06085"
     CDS             8887..9411
                     /locus_tag="HA345_06085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015492820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HIH84960.1"
                     /translation="MSESNVMTATRVTKITINIGVGEGGNRLQTAERVLEVLTGATPI
                     RTISKKTNRDLGTREGAPIGCKVTMRDQEQIQSFLKDAFWVRENTLPAWNFDSSGNLS
                     FGVSDYTDFPKQKYDPDIGIFGMDINVVLERPGHRVSRRRRRAHRVAMNHRVSREECM
                     AYFAGNYGLTIVEE"
     gene            9417..9569
                     /locus_tag="HA345_06090"
     CDS             9417..9569
                     /locus_tag="HA345_06090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010879404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HIH84961.1"
                     /translation="MGRDHGERIGRTIGCRRCGRKRGMVRRYGLRLCRQCFRDSAPEL
                     GFKKYE"
     gene            9582..9971
                     /locus_tag="HA345_06095"
     CDS             9582..9971
                     /locus_tag="HA345_06095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012997450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HIH84962.1"
                     /translation="MQFDPLSDAFVRMYNAEQAGHYMVTVSPASKLLGSMLAIIKERG
                     YIGEFEKLDNGRGGSYRIELIGAINRCGVIKPRYSVKRSDFEKWESRFLPAQDFGVLL
                     MTTNQGVMSHDKAKEARVGGRLLAYIF"
     gene            9981..10538
                     /locus_tag="HA345_06100"
     CDS             9981..10538
                     /locus_tag="HA345_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011822464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HIH84963.1"
                     /translation="MAKIDQVIHTIELPDGVTHSLDCDTLTLSKDGSQITREFRHSRV
                     SVRDSEGSLEVHCDLPRRREKALSGTWAAHIRNMVKGIDTGFTYRLKAVYSHFPMTIK
                     VQGNEMSITNLFGEKVPRIAPQPWSPTEVKVEVQNKVDVLVSGADIEKVGQTAANIER
                     ACRIRKRDRRVFQDGIYIVAKAETE"
     gene            10548..>10738
                     /locus_tag="HA345_06105"
     CDS             10548..>10738
                     /locus_tag="HA345_06105"
                     /inference="COORDINATES: protein motif:HMM:NF014133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAP domain-containing protein"
                     /protein_id="HIH84964.1"
                     /translation="MSEYEDMTVAELKVILKELGLSSTGKKADLIERLKAASEDTADE
                     EPTMVEEADEEVDDDDDFD"
BASE COUNT         2605 a         2629 c         3008 g         2496 t
ORIGIN      
        1 ctgtgaatct cctccattga atctaatcgg tcggagagga agcgaattcg ttgatccgaa
       61 atgaattcgt taattggtcg tgcttctttc cctctcgtgt ctgcgcgact cttcattcga
      121 ctcagagatt cacgagcagc cgcaacgcct tgagaaacta gtagattgct tagtgttagt
      181 aggcggatag atacgccgat atctgccgcg ctcctgtatg caattcgttc ttctctagta
      241 atagcggctt gtaccctgcg cattgcttcg ttcaatcctc ccacggtgat tgttccactt
      301 cggacataat gtcccaatcg ccgttccctc tgtactatgg tttccaacca cccttctagg
      361 ggtcttgcga gatctttgag ttcctgcgga acagggactt tgatttcctc aacctcaaga
      421 ttcgatgcat atggctgtaa catcgtttct gtcgatccac gtgcatgtat ccctgagaga
      481 tgaagtcgtt cacatacttc ctctactccg gcttcgttcc atccaggaga tgctgttgct
      541 ccgagaatta gagcatcagg gttcgcagcc atcagtaggt cgcctagttg cgctacagca
      601 gcattacctg tggcacgatg cgcctcatcg actacaagga gtgtgatatc ggataagtcc
      661 aatgtacctt tcatggcatc gtttcgaacc acttgaggtg ttgccacaat aattcgattc
      721 agggcccatt catctttgcg ctttgcagga ggcgttgctc ctgtaagacg gcctactcta
      781 tcttcatcgc ttatggctag gattcgttcc aagcctcgat gttgttgatc cactagggca
      841 ttcgtaggtg cgacaaggat gattctcccc tctttagttc ggagcctttc tgcaatcgcc
      901 atccactgaa ctgctgtctt tcccattcca gttgggagga cgagaagtgt agaggtcgac
      961 aagcatgcgt tgacggcttc tagctggtaa gcacgtgcct ctactgcttc atcctgaagg
     1021 aatgggtgca gaaccatcgg cgacatggaa ccatccttcc tctgtcaggg ttgaaaatga
     1081 ttccatctac taatgaggca tatttcgggg cggcgtgcat cgaagataac ccgattcaaa
     1141 gtcgaaccgt tgatatactc gactgaggtc ggagggctgc tcagtacgcg agcaaccaga
     1201 cactgacggg ctctgcaaca gcatcccggc acgccgccaa ggcaatcgcc gcagcggccg
     1261 ggtgtcacgg ttgctcctgc gttccctgag ccggttcacg ccgcttcggt ggcctctgaa
     1321 ttgcaaacaa cccattggag gaaacacaac atggccgaca agcatcgccc tcgtagaggt
     1381 agcatggcgt tcagcccgcg taagcgagcg aaccgacaac atggacgggt caaatcatgg
     1441 cccacgaccg atttggatga ggtacgtgtc cagggatttg ctggttggaa ggccggtatg
     1501 acccacgtac tgatgcgtga cctcaatccc tattccccta gtgctggtat cgaagtccgc
     1561 cacgcagtca ctgtcgtcga ggtaccacca attcgggttc tcgcagtccg tggttaccac
     1621 atgaccccct acggtcttca aaccgcaggt gaagcatggg ccgatgctga agatcttgat
     1681 gagaacatca agggactttt ccctagattc gctaaccgct ccaaggctga cagtcagata
     1741 caggatggaa tcaagcctgc caagcgcggt ggtcgccaga ccatgcctaa gaatcacgat
     1801 tctgaagcta atttcaatgc tctaaaggag cacgttctcg aggaagtaag gctccttgtt
     1861 gcgacacagc cctctcttgt gagtggttcc ccttccaaga cccctgaaat catggaactt
     1921 ggtttgacag gtggtaatat tgaggctcga ctcgaatggg gtaaggagaa cctcggtaag
     1981 gaaatcatct tcgatgatgt ctatggtgtt ggtcaagatg tcgacgtcgt tggtatcacc
     2041 aagggcaaag gattccaagg ttctgttaag cgatggggcg tcaagctcct cagtcacaag
     2101 aacagtaaga ggcgtcgtca ggccggtaac ctcggtgact tcggtactgg atacgttcgt
     2161 tctactgttc ctcaagcggg tcaggttggg ttccatcatc gtacggagta caacaagcga
     2221 atcttgagta tcgacgattc tgagaataac aatatcactc cagcaggcgg attcctccgc
     2281 tatggtgatg tgaagaatca gtacgtaatc atcaagggga gccttcctgg gcctaccaag
     2341 cgccttcttc gcttccgtga tgcgacacga tcgaagggtg atgttgaacc tgagaagatt
     2401 gagattacgc atgtgagtaa ttctagcaag cagggggtgt gatgaatgaa gacgaagact
     2461 attgcaattt cattctcaga tgaggcctct gcatcggcta agtccggctc ctcgatttct
     2521 cttcctgatg cattctcgag cgcggtccga accgacctcg tacgtcgtgc agttcactcc
     2581 tcccgtgcca atcggcgcca gccgtatggt caccgtgctc acgaaggtcg ccgtaagccc
     2641 gttgctggaa tgaagcactc ggttgagtgg tggggcaagg gtcgtggtgt tagccgaatt
     2701 atgcgtcgtt caggatctcg tgagggtgca gaaaacccgc atacacgcgg cggtcgccga
     2761 gctcatggtc cgaaagttgc caaagattgg tctcagaaac ttaaccagaa agagcgacgt
     2821 gctgcacgag atagtgctat tgctgcgtcc aatgactccg atactgttcg ttcacgtggt
     2881 caccgtgtct cagaggatgt atccttccca cttgtcattg aggcagcgaa gggaagcatc
     2941 gaatcgttcg atcttgacaa gggaactcag cgtttcgtgt ccatgatgga ggcgattggc
     3001 ctcggtgagg atctctcgcg cgcaaagagc ggtcgaagta tccgagctgg caagggcaag
     3061 atgcgcgggc gacgtcgaaa gaccccgaag agcgtcttgc ttgtcgtttc tgacaagtcc
     3121 actctcggac gcgctgctcg taatctacct ggcgtcgatg tcgtcgccgt gaaggatcta
     3181 tctgccgagc atcttgctcc tggcggtgac gttggacggc taacggttta caccaaggaa
     3241 gctgtcgagg agatgaggtg attctgatgg tcgaccccta tgatgtgatt cttcagccat
     3301 ggattactga gaagtctctc aacgcacgtc gtgttgctga tcccgacccg agtgggcaca
     3361 gggaaaacaa caaccgaatc gagttcatcg ttcgtcgccg tgcgacaaag gctgatatca
     3421 aggcagccgt tgaggattta ctcgaagtca aggttgcaaa agtcaacacg cgaatcatga
     3481 aaactggtaa gcatgcgagt gtcaaactcg ctgaaggtta cgatgcggag gaggcagcgc
     3541 tgaaactcgg cgctttctga tgaggtgatt attatgggta agagaacacg ttcacaacgc
     3601 cggggttcat ccccgaagaa ccgcgtccgg agccatcgtt tccctgggcg ttcccaagtt
     3661 cctcgtattg aggacgaagt ggttactgtc gtagagttga tccatagtcc agtccatacc
     3721 gcaccactcg cgcgtgtgaa gatggacagt ggtgaggatt tccacattgt cgccaccgaa
     3781 ggaatgggtg ttggtcagaa gattgctatt ggaggcaatg tctctcttcg acctggaaat
     3841 atcacgacac tggggagtat cccagaaggt actcctatca gcaacgtcga ggcacgaccc
     3901 ggcgatggtg gaaagatcgc tcgtagtggt ggaaattcag cagtcgtcga atcgaacatg
     3961 ggcgatattg tccgagtccg tcttccatcg ggtcgaatga aagaactcaa cgctaattgc
     4021 cgcgcatcca ttggtattct cggaggccat ggccgaaccg ataagccgat gatgaaggct
     4081 ggttctgctc actatcgagc taaggcacgc ggtaagttgt atccatcagt atctggtgtc
     4141 gccatgaatc ctgtggatca cccacacggt ggtggtaacc atcaggctgt acacggtcct
     4201 aactccgtac cacgaactgc tccacctggg cagaaggtcg gtcatatcgc acctagtaga
     4261 actgggcgcg gtcgctcgaa gtcgaaggag gtctgattca tgggtcgtaa gaagaagaag
     4321 atgttccgca cgccgaagat cgcgcgtcgt caggcacgta agcgccgttc tcaactcgca
     4381 ggtcgtcgcg aacgtgaatt cctttatcgc ggctacaaga tcgaggaact caaggcaatg
     4441 cctctggtcc tcccagatga tgatccgggt atttgcatcg cagatatcgt acctgcaaag
     4501 gtccgtcgaa ctcttctgaa cggactacct cgtgagcaac agcacctcta tgaccgtgtc
     4561 gtcaagagtg agcgcaccgt gcggactcac tgtcgaagta tgtatgtcat gcccgccatg
     4621 gtgggcaaga ctatcgctat tcataatggg cagaagttcg ttgagattga agtacgtgaa
     4681 cagatgattg gacacgctct cggcgaattc gctccaacac gacgtggagt cacgcacacc
     4741 ggtgtaggtg tgggtgcaac acgtggttcg aagcatgtgg cattgaagtg aggtgaagga
     4801 agatggcaag agattcaacc aagccccgta gcggatacac tcagctactc cagagtacgc
     4861 ctggcttcca tagcctaacc accgctcgtg cggtgaatct ggacattcat cacaagcact
     4921 gctaccaaat ttgtcgcttc ttgcgtaaca agacagttgg cgatgcgatt gactatcttg
     4981 aattggtcat caaggcagat ggttggatcg aggatccaaa caatccggat agttacaagc
     5041 gtcacaatga gcaccacatt cgtcgtaagg ctcgcgctat tccctacgtc cgccgttctc
     5101 gtaaggggaa gggtggaaac acaatggctg gccaccgtaa gggtcgaatg gggcctgggc
     5161 gtttcccggt caaggcatct ctagcttaca tccgccttct tcgctcggca atgaataatg
     5221 cacgtgagca gtatgaggac ctcgatgatg tcgaagatat ggtgattaca cacgttgcag
     5281 ctcaccgtgg ccaagtccac cgcgctttcc gaccccgtgc acgtggccgt gcaagtccaa
     5341 agaaccacta ccaagtcaat ctcgaggtat tcctcgaggc ggttgctgag gaaggcgact
     5401 gggacatgga tgacggagat ttctgaggtg atttaagatg gcgaagggaa gtaaagaaaa
     5461 catcgttcgt acattcatca accggaatgt tgagcgtcat ttggtcaagg agttcctact
     5521 ccatgagact caagatgccg ggtttggggg ccttactttc aagaggactc ctgagggcga
     5581 gatgatcgta ctcgaagcag aaaacgtagg ccgagttatc ggaactcgtg gccgtatcat
     5641 caatgaactc acccgccgtt tggagcagga cttcaacttg caccagccta agcttgaagt
     5701 tggcgaatgc gagaagcctg ctctgaatgc tcagattatg gcgagtcgcc tcgcctcctc
     5761 acttgagcgt gggtggttct tccggcgtgc aggaaacagc actgccatga acatcatgaa
     5821 tgaaggtgca cgtggttgtc tgatcgttct ttctggaaag gtcagcggcg ctcgtaaccg
     5881 gacccagaag ttccaagcag gtcacatcaa gttctgtgga gagaccgctt tgtccactat
     5941 ggacgtcggc tatgccgttg ctgtcaagaa actcggaact attggttgca ctgtcgcaat
     6001 catgcgccct ggcacacgtt tgcctaacga actaatcatc aagagtcgag aggaagttgg
     6061 tcttgagccc cttcctcgtg actacgagat tactgagtcc cgtgtagggc cagttagtga
     6121 agtcgaggac gaagacgttg ttcccgatat gtccgaggac gagatggtgg aagccagcgt
     6181 ccaagctatt gcagagtttg aagccgagat gactggcgga gaggaggagt gattacatga
     6241 ctcacctcaa ggcccgtgaa atcgacgaga tgagcgatga ggctcgcgag aagcgcctca
     6301 tcgaactccg tgaggaactc ttgcagctaa gggctcagaa gtcccttggt ggatcagtac
     6361 agaactcagg tgaattcaag cagactcggc gaagtatcgc ccgtttgctc actaagatga
     6421 acgagaagaa ggagtaggaa cgaatggcaa gcatctgtaa tctgtgcggc ctacccgatg
     6481 aattgtgcat ttgccaggaa atcgcgaagg agcaacagaa agcaatcatt cgcacagata
     6541 gaaggaggta tggaaagatg gtaactatcg ttgaaggaat cgatgattct gcaattgata
     6601 tccatgacct cgctaagacg ctcaagagtc ggtgcgccag tggtggcact gttaaggggc
     6661 gaacgattga acttcagggc gatcataaga agcgtgcctc gaaggtgctt gagcagaacg
     6721 gctacacagt ggaggtgcgt tgaatggaga ttatccacct tccttggcta tctcgtaatc
     6781 ttagagttgt cagttcggct gatccaagcc ttgagggcat agaaggctgc gttttggacg
     6841 agacgcgccg cacggttgtc gtgcagaagg gagagcgaga aattcgcatt ccaaagtccg
     6901 taatccgatt ctcgattgat ggttccgaag ccatcgatgg gcgttctgta tgccagaggc
     6961 cagaaaatcg gattcatatg aattggagga tgaagtgaaa tgaccacacc ccgtgacatc
     7021 ggcgtcgacg tgaaggcacc agagggcgaa tgggacggca gtgagaactg tccgttctat
     7081 ggaagcctcc gcgtgcgcgg acagataatc gaaggacttg ttgcaagcgt cgggatgaat
     7141 gactcgatta ttgtgcagaa tgagcgaatc cgttcgatga agaagtacga acggtacgag
     7201 aagcgcacta atcgctacaa cgctcacctc cctacctgta tcggcgatat cgccgtaggt
     7261 gatcgtgttc gcattatgga atgccgccct ctttccaaga cggtctgttt ctgtgttatt
     7321 gagaaggagg tctccgaatg aagggtattt ccagtaaggt tacgcgagca atcccatcca
     7381 tggggacgat gctctgtgtt gacaacagcg gtgcaaaggt ggttcaatta atcacggtcc
     7441 tccgaagagg ttcagtgcat cgtcgttatc ctgcaggcgg cataggcgat ctcgtccagg
     7501 tcactgtcaa gcgtggcact cctgaggtgc ggagaaaggt ccaccatgcg attattgttc
     7561 gtcagcgccg tccattccga cgtgctgatg gaacctgggt tcagtttgag gacaatgctt
     7621 gtgtcctaac caacgagaaa ggtgaactca agggatccga catcaagggt ccagtaagtc
     7681 gagaatccgc ggagcgctgg cctcgtgtcg ctgcaaccgc gaagcagatt gtgtgaggtg
     7741 aaagatatgg tacgtagcag tcagccaaga aagcaaagga aggcggcggg ttccgccccc
     7801 aatcatagtc agcgtaagcg tgttcgtgca cgcctacaac ttgatgacaa ttccttcaca
     7861 accgttcgca acatcacagt tcgtgcaggc gacacagtga aggttgtccg cggtgatttc
     7921 ggatttccga acagtaagaa gtccgatggt cgtggcaagc gaaaccaagg caagcgtggt
     7981 gcatctggca ttgagggcga ggttctcaag gtcaatccag atggtactct ccacatcgaa
     8041 ggtattgctg tcacgaagtc cgatggtaag gatgagccta tgcctgtccg cgcctcgaac
     8101 gtggtcgtaa tcaaactcga tgattccgat gcgaagcgga tgtctaagtt agctgagcga
     8161 gagaacagag gtgcatgaga tgggtcgaag cagtcacatg aagagattgg caatgccacg
     8221 aagttggcca cttccacgaa agactagtgt ctgggtccag cgtccagatc cttgcggtca
     8281 tcccatcgaa cgttgtatgc cgattggtat tgttcttcga gatattctag gtgttgctgg
     8341 gactcgtcga gaggttagtc agattctgaa caagagtgtt gttgaggtcg atggccgtgt
     8401 agtgacctct acaggtcgag gcgttggtct cctagacatt ctcactgtcg gtgaccagaa
     8461 ttacatgtgt gtcctcgaca atcgaggacg cctcgcatac aacccgattt ccaagaagaa
     8521 tgcaggcacc aagttctgcc gacttaatgg caagacgaca atcaagggtg gaaagaccca
     8581 gctctcgttc cacgatggac gaacgctcat cgttgacgat gcaagcaagg atagttgggc
     8641 cactggttcc acgtgcatca tagatctcgc atctggcaag attaaggata cgctcaaggc
     8701 ggaagccgga gcttcctgct acctcattgg tggaaaccac gttggtgaga ttacgaccct
     8761 caaggaaatt gagaccaagc ggtcctcgat gcctaacgag attactttcg aagagggtta
     8821 tgggaccatc gaggactatg tcatggtcat tccatctgtc gattctcttc cattggaggt
     8881 gactgaatga gtgaatccaa tgtaatgact gcgactcgtg tcactaagat cacaatcaac
     8941 atcggtgttg gtgaaggcgg caatcgcctt cagacggccg agcgtgttct tgaggtcttg
     9001 acaggggcta cgcccatacg aacgatttcg aagaagacga accgtgatct tgggacgcgt
     9061 gaaggcgctc caatcggctg caaggttact atgcgtgacc aggagcagat tcaatcgttc
     9121 ctaaaggacg cattctgggt tcgtgagaat acactcccag cttggaattt cgattcatcg
     9181 ggcaatttgt cctttggtgt ttctgactac actgatttcc ctaagcagaa gtacgatcca
     9241 gatattggca tcttcgggat ggatatcaac gtcgtactag agcgccctgg tcacagggtt
     9301 agtcgtcgtc gacgccgcgc acatcgtgtg gcaatgaatc atcgagtcag ccgggaggag
     9361 tgcatggcgt acttcgccgg aaactacgga ttgacaatcg tggaggagtg aataacatgg
     9421 gacgagatca tggagaaaga atcgggcgca caattgggtg tcgccgctgt ggacggaagc
     9481 gaggtatggt acgtcgctac ggtctgcgtc tatgccgcca gtgtttccgc gactccgctc
     9541 cggaattggg attcaagaag tacgagtgag gtgatgaaga gatgcaattc gaccccctaa
     9601 gtgacgcatt tgtgcgtatg tacaacgctg agcaggcagg ccattacatg gttacagtca
     9661 gcccagcgag taagctgctc ggaagtatgc tggcgattat caaggagcga ggctatattg
     9721 gagagttcga gaaactcgat aatggccgtg gtggctctta ccgaattgag ttgatcggcg
     9781 caattaaccg ctgtggcgtc atcaagccgc ggtattctgt caagcgcagt gatttcgaga
     9841 agtgggaatc acgcttccta ccagcacagg actttggtgt tcttctcatg acgaccaatc
     9901 agggcgtcat gagtcatgac aaggcgaagg aggcccgtgt cggtggtcgc cttctggcgt
     9961 atatcttctg aggtgagaaa atggcgaaaa tcgatcaagt tattcacacc atcgaactcc
    10021 ctgacggagt cactcattcg ttagattgcg atacactaac gctatccaag gatggctcac
    10081 aaattacccg cgaattcagg cacagccggg tatctgtccg cgactcagaa ggatcccttg
    10141 aggttcattg tgatctccca cgtcgccgtg agaaggctct ctctggtacc tgggcagccc
    10201 acatccgcaa catggtcaag ggtatcgaca caggattcac ctatcggctc aaggccgtgt
    10261 actctcactt cccgatgact atcaaggttc aaggtaacga gatgtcgatc accaatctat
    10321 tcggagagaa ggtccctcgt atcgcaccac aaccgtggag tcccactgag gtcaaggttg
    10381 aggtccagaa caaggtcgat gtcctcgttt caggcgctga tatcgagaag gtcggtcaga
    10441 ccgctgctaa cattgagcgc gcatgccgaa ttcgcaagcg tgaccggcgt gtattccagg
    10501 atggcatcta cattgttgcc aaggcggaga cggagtgagg tgagtaaatg tccgaatacg
    10561 aagacatgac tgttgcagaa ctcaaggtga ttctgaagga gctcgggcta tcgagcactg
    10621 gtaagaaagc cgatcttatt gagcgcctca aagcggcgtc tgaggatact gctgacgagg
    10681 aacctaccat ggtagaggaa gctgatgaag aggtcgacga tgacgacgac ttcgacga
//
LOCUS       DUKB01000179            8222 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_862, whole genome shotgun sequence.
ACCESSION   DUKB01000179 DUKB01000000
VERSION     DUKB01000179.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8222)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8222)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8222
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_862"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /gene="rpsI"
                     /locus_tag="HA345_06110"
     CDS             complement(<1..198)
                     /gene="rpsI"
                     /locus_tag="HA345_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010878625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HIH84965.1"
                     /translation="MAARSKKKISVESSGKRKTAIARASVKKGKGRVRVNGSPIEIMQ
                     PDMARMKAMEPLAIADAMGRLA"
     gene            complement(198..680)
                     /gene="rplM"
                     /locus_tag="HA345_06115"
     CDS             complement(198..680)
                     /gene="rplM"
                     /locus_tag="HA345_06115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015300981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HIH84966.1"
                     /translation="MAETTFVYDASDKVLGRLASHVANQLLSTAKAGDGARVIIVNAE
                     KAVVSGKKTEVFRDYKSKRELNHPRKGPFFPRMPDKILKRTVRGMLPYQKSRSGRIAL
                     RNLRVEIGTPSNLKGDLPDGHEWGDTSKFDRGLPNSFVRLEDISESLGADITRFGGEA
                     "
     gene            complement(673..1038)
                     /locus_tag="HA345_06120"
     CDS             complement(673..1038)
                     /locus_tag="HA345_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019177764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HIH84967.1"
                     /translation="MAGQNTKTNEGLVELISDLKAQTRSTGAALWRDVANRLERSRKN
                     WAEPNLSRLERHMPEDATVLVPGKLLGSGLVSGKRTVAAYSVSNGARVKIEQAGGRVI
                     TIRELMNENPKGTGVLILG"
     gene            1181..1621
                     /locus_tag="HA345_06125"
     CDS             1181..1621
                     /locus_tag="HA345_06125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84968.1"
                     /translation="MSNWMDLMTEAMTGDTTDVVATHRLLKQCEEAAMAEVQALLGSS
                     EEVSAAMTSLYGALSAYVQAVTLRAKAEGAEPGDLDHAFRTGQSYGVSCVLNHLIDDL
                     VDPNSGSILASLDEFSDSLHNEITSQVDEAGLTVEVLDAKGDMI"
     gene            complement(1828..2160)
                     /locus_tag="HA345_06130"
     CDS             complement(1828..2160)
                     /locus_tag="HA345_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HIH84969.1"
                     /translation="MGRWIYLGLAIISEVTATASLKATEGFTNLIPSVIVIIGYCSAF
                     YFMSLTLDTIPVGVVYAIWSGAGIVGIAIVSYILYGQRLDPGAIIGMGLIIAGIIVMR
                     LFSDASFE"
     gene            complement(2361..3050)
                     /locus_tag="HA345_06135"
     CDS             complement(2361..3050)
                     /locus_tag="HA345_06135"
                     /inference="COORDINATES: protein motif:HMM:NF012455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84970.1"
                     /translation="MKIEEKVSILNWKVEVENMTETVDGKMMTNEFLGSLAVVYFMTS
                     MAVGSSGVTNAMAAGLVLAVMMMTLSGAMILPWITLGRVMKQEMDWQTGVLAWLMQIL
                     GGVVAYSIDWWVMKGQGHDAMVEAAFTSYLSNFSLDASVILMTFIGAFLLMMVWSRLG
                     GGWAMGIFAWMLMSGGIDVVSAGGVGGMIVTASYGTDAIVQVLGMMILGGVGAAAWLY
                     FDEMVLSSEEE"
     gene            complement(3248..>7619)
                     /locus_tag="HA345_06140"
     CDS             complement(3248..>7619)
                     /locus_tag="HA345_06140"
                     /inference="COORDINATES: protein motif:HMM:NF024948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4129 domain-containing protein"
                     /protein_id="HIH84971.1"
                     /translation="PWDHDDFGGGLGIANPSDPSTGPDVIDNDDDNDTRTDLDYDHLE
                     ENEVCIDAAGNSYPASDWDSDNDCILDEDDKIPTRVNMSIPGTMWMDGRKAAIFSGSV
                     SWLDPSQNQFVPAPNLPVQVTIEWAGNGTEAVQTIDVLSSEFGGFTVGQFLLPEDLDV
                     GPNTTYNAYAEVTEMFIHDGSTSEMYPLEIRANTTFDYVAPEYLRSGENPLYLDFKTH
                     YSADWERGIFNNRIKYAPVAFEVSGGPFGTRDNPSIFDGAGQGFRADEGGYVSLTFVQ
                     NQGALGEWKQVRYNASLNNGPGTIPGGYEEIIWNGFLNNHDVVSTYEYTNTTLPKGKY
                     LFDGEANMSYAGPNEWPFPWLEGDELDTFEIDSVERMFIGSRIIVPSHNPVFFWDAQQ
                     FTGAYFGAWRPMFSEAGLVNAGYDTDMNNQISPSEFAAVSSGRQYSVLWNDNPADLPL
                     GNASENIDSPLRDFVTTNSTHWFVSMVNGADSNVPPCGPVDPLDQNSPIRCEIVPEMN
                     TGETFGTIGDVKNRTLVPWTDGTTVLQVDLDQDSVFAGSRESVNPKYPVLSGGLAVMD
                     FNWTWRTEYQALTYGVKVDFVDSNFFFTGNQTYTLSPTGAHVNVSVVGTTDFQLNTVP
                     VLYRGMNTTLEARLIDNSLQPVPFQPVNWTWSANGTSGLAQTDVNGVFKIPLNISKDH
                     FLGNFSMTFGFPGTQRLKSSSVTQALWVVSRTFINLEATTSGERSSGDVWSVSAQVTD
                     DNRTPSIRDLGQALDGIGENGGRVLLIFEGTDFDNRQHRRIISELTPNAGSVYHEMLL
                     NPQLLKDDPESFLPDGFGPVNVILRFEENLPHEGCVALENWMLSMQGAWDPCTSIPNN
                     EHFRRELQYNVDGFYLRGRTTLDVDDQIVYTSEVNPVTGEVVEKPMTVTGRLTDELGG
                     NLSNRDIQISYQMTGSAADVPQCEAGRTDNDGYFEIDCPLNGVFAGQAQVTVRYNADL
                     NNDGYRFKDATVIKNFAVFSNSTLNVEEVGPFLTDVDRYVFAGNGSSIPVLYLKEPFH
                     VHAALYQSNGNMLGGRCLNIYLSPEINPRPIASAVTDDADGRIEWYSGDPEQNPSRRG
                     VEPIGGQGLEGFRTLRVAYEPKMEVSGGCGQEANAVVNGSHMDITVLVRSRVDIILKD
                     TWSKADGYQPDEWVNGTVQVMRDRLDVPVSGEQVMFIREYWNGTDWVLENIDYQTTLD
                     NGEASFSWQYTAQDVPGSDDSAVGGKWRILVQFRDSPNFEQTFLNNTPEIVLGDEPMG
                     EQTSGLFTAQVMLPLLIALLLAAVIGAVMYRNYQERRRIEILRGILTDSLMSLRASNE
                     YIQAIFDCWKQLVSFFRSKGAMKKVYETTREFEDAVNRMLGGITPPHELDAFLSLFEE
                     ARYSDHEIGAAQRDRAIQTLQAVVNSLTLALGEIQLARVVDEGSRYENLTKAGEFVDA
                     DGQLRQAGVGEDGAADNFSL"
     assembly_gap    7620..7942
                     /estimated_length=323
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7943..>8222)
                     /locus_tag="HA345_06145"
     CDS             complement(<7943..>8222)
                     /locus_tag="HA345_06145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84972.1"
                     /translation="CFVGEEQHPFDHDNDGVPDGKGETDWDMDGITNTVELASQTPWI
                     SPWDHDNDGIRDDVDLDDDSDGMHDEDEILLWPQRYNNESTNPWDHDDF"
BASE COUNT         2059 a         2064 c         1840 g         1936 t
ORIGIN      
        1 tgcaaggcga cccatagcat cagcaatagc gagtggttcc atggccttca tgcgagccat
       61 atctggctgc ataatctcga tagggctgcc attgactcga actcggccct tgcctttctt
      121 gacactagcg cgagcaatcg cagtcttacg cttaccgcta gattcgactg agatcttctt
      181 cttgctacga gctgccatca tgcctcacct ccgaaacgtg tgatatccgc accaagtgac
      241 tctgagatgt cctccaaacg aacaaaactg tttggaagac cacggtcgaa cttcgaagtg
      301 tcgccccact cgtggccgtc aggaaggtca cctttgaggt tactgggtgt accgatttct
      361 acgcgaagat tgcgtagagc gattcgccct gaacgtgact tctggtaagg tagcataccg
      421 cggactgttc tctttaggat cttgtcaggc atacgtggga aaaacggacc cttgcgaggg
      481 tgattgagtt cacgcttgga tttgtagtcg cggaatactt ccgttttctt accgcttaca
      541 actgccttct cagcgttgac aataatgacg cgagcaccat caccggcctt agcagtagag
      601 agtaactggt tcgcaacatg actggccagt cggccaagca ccttgtcaga tgcatcgtag
      661 acaaacgttg tctcagccaa ggattagcac ccccgttccc ttaggattct cgttcatcag
      721 ctcacggatt gtgattacgc gtccgcctgc ctgttcaatc ttgactcgag caccattgct
      781 cacactgtat gcggcgacgg tgcgtttgcc tgaaaccaat ccactaccaa ggagcttgcc
      841 aggcacgagg acggttgcat cctcaggcat gtgccgctcc aaacggctca gattgggctc
      901 ggcccagttc ttacgacttc tttcgagtcg attcgcaaca tctcgccaca gcgcagcacc
      961 agtggaccga gtctgggcct ttaggtcgga gatgagctcc accaggccct cattggtctt
     1021 cgtgttttgt cctgccatat gactccctcg atgtattggg gattccggcg accgaccctt
     1081 ccgatatgaa ccctttgagc gaaaagggaa gactgctcca aggaatgaat atcggaaaag
     1141 gggggaatga ttcattcgtc cgaccctccc tgttcgcacc atgagcaact ggatggacct
     1201 gatgaccgag gcgatgactg gcgatacaac cgatgtagtg gccacccatc ggctactgaa
     1261 acaatgtgag gaggcagcaa tggctgaagt ccaagcactt ctaggctcat cagaagaggt
     1321 ctcggctgca atgacttcgc tttatggggc actttctgca tacgttcaag cagtcaccct
     1381 tcgagctaaa gcagaagggg ctgagcctgg agatctcgac cacgccttcc gcactggaca
     1441 atcctacggc gtctcctgtg tgttgaacca ccttatcgat gacttggttg atccaaactc
     1501 tggatctatc ctcgcaagcc tcgatgagtt cagcgactcc ctacacaacg aaatcacctc
     1561 tcaagtcgat gaagcgggcc ttacggtcga agttctcgat gccaaaggcg acatgattta
     1621 gactcatcaa taagttaatt caggattctc aatttggaat gaaaatggat gatggaaagt
     1681 caggcgaaga tgaccctaag ttgatactac ggtttggtat ggttttcttc gcaataattg
     1741 gtttagtgat tcttttgaga atattcacat ctgataatca atatccagat tttattggtg
     1801 agtttataga atgataaaat gtttgaatca ctcgaatgaa gcatcactga ataacctcat
     1861 cacgatgatt cctgcaatga ttagacccat tccaataatt gcaccaggat ctaatcgttg
     1921 cccatacaaa atgtaggaca ctatagcaat ccccactatg cctgcacctg accaaatcgc
     1981 gtaaaccact cctacaggaa ttgtatccaa tgtaagagac atgaaataaa atgcagagca
     2041 atatccaatg atgacaatca cggatggaat gagattagtg aatccctctg tagccttcag
     2101 agaagcggta gcggtaacct ccgatataat tgcaagacca aggtaaatcc agcgccccat
     2161 aaatcgggga cgaatagatg agaaatgatt cattcgcttg attgagcgtt taagaaaaag
     2221 gggccgagat gaaggaaagg cacgatgcgc caatccctca tcccgagggt tagagggaga
     2281 agcggccgaa gccgcatctc acctcatgtc attgggtcca aaggacagta attccacagc
     2341 catcaatggc tatgagtgga tcattcctct tctgaagaga ggaccatctc gtcaaagtag
     2401 agccatgctg cagctccaac tccaccgagg atcatcatac cgaggacctg gacgattgcg
     2461 tccgtgccgt atgatgctgt gacaatcatg ccaccaacac cgccagcgct gactacatcg
     2521 ataccgccag acatgagcat ccaagcaaag atacccattg cccatccgcc accgaggcga
     2581 gaccagacca tcatcagtag gaatgcgccg atgaacgtca tcaggataac cgaagcatcc
     2641 agagagaagt tcgagaggta cgacgtgaat gccgcctcaa ccattgcatc gtgcccctga
     2701 cccttcatga cccaccagtc aatcgagtaa gcgactactc cacctagaat ctgcatgagc
     2761 caagctagca caccagtctg ccagtccatc tcctgcttca tcactcggcc aagggtgatc
     2821 cacgggagaa tcatagcgcc cgagagcgtc atcatcatca ccgcgagaac aagccccgct
     2881 gccattgcgt tcgtcactcc cgaagacccg actgccatgc tcgtcatgaa gtacacaacg
     2941 gcaagtgagc ccaggaattc gttcgtcatc atttttccat caacagtttc agtcatattt
     3001 tctacctcta ctttccaatt aaggattgat actttctctt caattttcat atataaaaag
     3061 gtcggaaaaa ctgcgtttca agtgctgatt tgcggtttac ctgagtatat ccggtctacc
     3121 cagcgtagcc aagtttactt tctacaccag ttcagggatc agtgaaatga taattttcgt
     3181 gacctacggt cacgaacgct accgctattc cctagtgggc cgaacttcaa cgcagaactc
     3241 cagagaatca caaggagaag ttgtctgcgg cgccgtcctc gccaacgccc gcctggcgta
     3301 gctggccatc agcatctacg aattctccgg ccttagtcag attctcgtat ctactacctt
     3361 cgtcgacaac tctcgcgagt tgtatctctc caagtgctaa ggtgaggcta ttcaccacag
     3421 cctgtaaggt ttggatagcg cgatcgcgct gagccgcacc aatctcgtga tccgaatatc
     3481 gggcttcttc gaagaggctg aggaatgcat ccaactcatg aggtggagtg attccgccaa
     3541 gcatgcgatt tactgcatcc tcgaactcac gtgtggtctc gtagaccttc ttcatcgctc
     3601 ccttactacg gaagaaggag actagttgct tccagcaatc gaagattgct tggatgtact
     3661 cgttagaagc gcgcagcgac atcagggagt cggtcaagat accacggagg atttcgatac
     3721 ggcgacgttc ctggtagtta cgatacatca cagcaccaat caccgctgca agaagtagag
     3781 cgatcaagag tggaagcatg acttgagctg tgaacaagcc acttgtctgt tcacccattg
     3841 gctcgtcacc aaggacaatc tccggagtat tgttgaggaa cgtctgctca aagttaggag
     3901 agtccctgaa ctgcacaagt atcctccact taccacctac agcgctatca tcactacctg
     3961 gtacatcttg tgctgtgtac tgccaagaga acgatgcttc gccgttgtca agtgttgtct
     4021 gataatcgat attctcaagc acccaatccg taccattcca gtattcacgg atgaacatga
     4081 cttgttcgcc ggaaactggc acatcaagac ggtcacgcat gacctgaaca gtaccattga
     4141 cccattcgtc tggctgatag ccatccgcct tagaccaagt atccttcaag atgatgtcaa
     4201 cacggctacg cacgagtaca gtgatgtcca tgtgcgaacc attgactaca gcattcgctt
     4261 cttgtccaca tccaccgctg acttccatct ttggttcata ggcaacacgg agagttcgga
     4321 atccttcgag tccttgtcca ccaatcggtt caacaccccg gcggcttgga ttctgctcag
     4381 gatctcctga ataccactca atacggccat ctgcatcatc tgtaactgca gatgcgattg
     4441 gtcgcgggtt aatctcagga cttaggtaga tgttgaggca acgtccacca agcatgttcc
     4501 cattactctg gtagagtgct gcatggacat ggaacggttc cttgagatag agcacaggaa
     4561 tactggaccc attaccagcg aagacatatc gatcgacatc ggtcaagaag ggaccaactt
     4621 cttcaacatt cagagtgctg ttcgagaaaa ctgcgaaatt cttgatgact gttgcatcct
     4681 tgaagcgata gccatcgttg ttcaaatcag cattgtatct gactgtgacc tgagcctgtc
     4741 cagcgaagac gccattcagt ggacaatcaa tctcgaaata tccatcatta tcagttcgtc
     4801 ccgcctcgca ttgtggcaca tcagccgctg aacctgtcat ctgatagcta atctgaatat
     4861 cacggttaga gaggttccct ccaagttcgt cagtcaaacg accggtgaca gtcatcggct
     4921 tttcaacgac ttcgccagta actggattga cctcgctggt gtagacaatc tgatcgtcga
     4981 catctagcgt ggtgcgtcca cgaaggtaga atccgtcaac attgtactgt agttcacgac
     5041 ggaagtgctc attgttagga atcgaggtgc atgggtccca tgcgccctgc atcgaaagca
     5101 tccagttctc aagagcgacg catccctcat gaggtagatt ctcctcgaat cggagaatta
     5161 cattgactgg tccgaatcca tccggcaaga aggattcagg gtcatccttc agcaactgcg
     5221 gattcaatag catctcgtgg tataccgatc ctgcattagg agtcaattcg gagatgatgc
     5281 gcctatgctg ccgattatcg aagtctgttc cttcgaaaat cagtaacact cgcccaccat
     5341 tctcacctat accatcgagg gcttgcccta gatcacggat tgatggtgtc cgattatcat
     5401 cggtgacttg ggccgaaacg gaccaaacgt caccactaga acgctctcct gaagtcgttg
     5461 cttcaaggtt gatgaaagtc ctactaacaa cccaaagtgc ctgagttacg cttgaactct
     5521 tcagacgttg tgtcccaggg aatccgaacg tcatcgagaa attaccgagg aaatgatcct
     5581 tactgatatt caacgggatc ttgaacacgc cattcacatc agtctgagcg agacctgaag
     5641 tgccattggc ggaccaagtc caattcaccg gctggaacgg aactggttgg agtgaattgt
     5701 caatcaggcg tgcttcaagg gtggtgttca tcccacgata gagaacgggg actgtgttca
     5761 gttggaagtc tgttgtacct accactgaga cattcacatg ggcgccagtt ggcgacaaag
     5821 tgtaggtctg attaccagta aagaagaagt tagaatcgac gaagtcaacc ttcactccat
     5881 aggtcagagc ctggtattca gtgcgccatg tccagttgaa atccataacc gcaagacctc
     5941 cggatagaac tggatacttc gggttaacac tctcacgact accagcaaaa acactgtctt
     6001 gatcaagatc aacttggaga actgtggtgc catctgtcca tggaaccaag gtacgattct
     6061 tgacgtcgcc aatagttccg aacgtctcac cagtgttcat ctcggggacg atttcgcaac
     6121 gaattggact attctgatct aatggatcta ctgggccaca agggggcaca ttcgaatctg
     6181 caccattgac catcgagaca aaccaatgag tactgtttgt ggtaacgaag tcgcgcaatg
     6241 gagaatcgat gttttccgat gcattaccaa gtggaaggtc agctggatta tcattccaaa
     6301 gaaccgaata ctgacggcca gaagatactg ctgcaaactc cgagggtgaa atttggttgt
     6361 tcatgtccgt atcatatcct gcattaacca agccggcctc actgaacatt gggcgccaag
     6421 caccgaaata cgcaccagta aattgctgcg catcccagaa gaagacgggg ttatgtgaag
     6481 gaacgataat tcgtgaacca atgaacatgc gctctactga gtcgatttca aacgtatcta
     6541 actcgtcacc ctcaagccat gggaatggcc actcgttagg gccagcataa gacatgttag
     6601 cctcaccatc gaacagatat tttcccttgg gtagagtggt attcgtgtat tcatatgtgc
     6661 tcacgacatc gtgattattc aggaaaccat tccagataat ttcctcgtaa ccaccaggga
     6721 ttgtcccggg accattattg agagatgcat tgtaacgaac ctgtttccac tcgcccagag
     6781 caccttggtt ctggacaaat gtcaacgaga catagccgcc ttcatccgca cggaatcctt
     6841 gtcccgcacc atcgaagatg gatggattat cacgagttcc gaatggccct cctgagacct
     6901 caaaagcaac tggggcatac ttgattcgat tgttgaaaat tccacgttcc caatccgcag
     6961 aataatgggt cttgaagtca agataaagag gattctcgcc actccgcaag tactctggag
     7021 caacataatc gaaggttgta ttcgctcgaa tctcaagcgg atacatctct gaggtactac
     7081 cgtcatggat gaacatctct gtgacttctg cataggcgtt gtaggttgta ttcgggccca
     7141 cgtcgagatc ctcggggagt aagaattgtc caactgtgaa tccaccaaac tccgaagaga
     7201 gtacgtcgat ggtctgtact gcttcggtac cattccctgc ccattcaatt gtgacttgca
     7261 ctggcaagtt aggtgctgga acgaattggt tctgcgaggg gtcaagccaa gaaacagagc
     7321 cagagaagat tgctgccttc ctgccatcca tccacattgt tccagggatg ctcatattga
     7381 cacgagtagg gattttgtca tcctcatcca atatgcagtc gttgtcactg tcccaatcag
     7441 atgcagggta actattgccc gcagcatcta tgcagacctc gttctcctca agatgatcat
     7501 aatccaaatc cgttcttgtg tcattgtcat catcgttgtc gatgacgtca ggacctgttg
     7561 aagggtcaga tgggttagca ataccaaggc ctccgccgaa atcatcgtga tcccatggan
     7621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7921 nnnnnnnnnn nnnnnnnnnn nngaaatcat cgtgatccca tggattcgtt gattcgttat
     7981 tgtagcgttg aggccaaagg agaatctcat cctcatcatg cataccatcg gaatcatcgt
     8041 caagatcgac gtcatcacga ataccgtcat tgtcgtgatc ccatggacta atccaaggag
     8101 tttgactcgc aagttcgact gtgttagtga taccgtccat atcccagtcg gtctcaccct
     8161 tgccgtctgg aacaccgtca ttgtcatgat caaacggatg ttgttcctcg cccacgaagc
     8221 aa
//
LOCUS       DUKB01000180            4101 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_109234, whole genome shotgun sequence.
ACCESSION   DUKB01000180 DUKB01000000
VERSION     DUKB01000180.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4101)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4101)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_109234"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            89..274
                     /locus_tag="HA345_06150"
     CDS             89..274
                     /locus_tag="HA345_06150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84973.1"
                     /translation="MGGSLGVLFGIGVGVMFLFGVISWPILPYICAASIFGGGFAMFE
                     GWSGWCVVRAIGIRTPL"
     gene            complement(286..1191)
                     /locus_tag="HA345_06155"
     CDS             complement(286..1191)
                     /locus_tag="HA345_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017879404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84974.1"
                     /translation="MGTDVRIDTLDRLGNRYRSHRIGLIRTPSQFLANSSLIARCRRV
                     VTSFMPFLRLRSDVTNVVYTTWLLETESVKELVPNGLSLWERNGLTPFTILTYRHGNF
                     GPSFLGPLRRIFRSPLQSNWRLYLESPPEGAPQDASTVLFLKNSMSSHLYMLGTRLLS
                     DVLATHLPARFSHEIEGGRFFTIIESGSGNSPNFNSVTQSIREKELDIGFSDMFESWG
                     SAVEFLAMQDAAVSYTDQPSVLAFSEIELPIDLSNVSPLELVEEESSCPFLERFTRHG
                     GTLSFVIRELDFNATSECLLKPKDA"
     gene            complement(1206..2378)
                     /locus_tag="HA345_06160"
     CDS             complement(1206..2378)
                     /locus_tag="HA345_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003242719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HIH84975.1"
                     /translation="MNFEETDEQTMIRELVRDFAESVLTPTALERDREQRPPTEEWAQ
                     FIEYGLHTCTIPEEYGGTPLDDISEAIIVEELSRVDPSFGVYYCVHVGLCSMTISLHG
                     NNEQKAKYLPQLAADKVGAYSLSEAGAGTDAAAMVCKAKLSEDGSHYILNGEKMWVTN
                     GNSADIYVLFAKDVDHPDYGVKKHGGTTAFIVEKSFEGFSVGKKEDKLGIRSSDTCTL
                     VLEDCKVPIENMIKESGKGFPIAMNALDNSRIGIAAQALGIAQGALEAAVRYAHEREA
                     FGKPIAYHQTIGNYLADMATQTDAARLMVYRAAWAKEQHYHHGGPRHTKEASMAKLFA
                     GDTAMWVAERAVQVLGGYGYTTDFPVERFFRDAKITQIYEGTQEVQRIVINRALGN"
     gene            2499..3020
                     /locus_tag="HA345_06165"
     CDS             2499..3020
                     /locus_tag="HA345_06165"
                     /inference="COORDINATES: protein motif:HMM:NF013743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84976.1"
                     /translation="MSDDEEFTVAVGRRYTREHLWFQLISSPNEIPVEYKVGISDFIR
                     VEYGRIMRATLPNMSEGGGFRIVSEEEPEEEEMPLPPPTDDDEKVEIGIGELSTDDNL
                     VGIRCELETLNILSPIPCTVIGLNGEVENTPQLVNRDAYGDGWLINVRPHDGFDFDDL
                     MTAEEYVDYLEEV"
     gene            complement(3021..>4101)
                     /locus_tag="HA345_06170"
     CDS             complement(3021..>4101)
                     /locus_tag="HA345_06170"
                     /inference="COORDINATES: protein motif:HMM:NF024041.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012233724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HIH84977.1"
                     /translation="IALIPNAIPTGIQFGTVTVPPRGSDGPVEITTLRADGEYIDGRR
                     PTSVTYGASIEEDLERRDFTVNAMALEPVNRILIDPHLGRNDLDNGILRAVGDPMRRF
                     KEDGLRVLRAYRFMAHPSGPYLPDESLAHTLHDGGAVSLLVGVSKERVLMEMERLLTY
                     PSVEDTLVRMERDGVLQVVFGTEWSVASPEGLDDCFDDEVNPWALRIARFALLLRRTD
                     SVSRSILLDGLRMSGQDRSAVLAVCERLGQLPDPMDKGQLRRYRVALGTHLGAQLAAD
                     RCLDPSLADSVHNSLMALAPLKAGENPLVNGLMIVNRLSMEAGPELGRVKSLLYRVQI
                     ELDLSDAESIWDAAGDLDGPAHMWP"
BASE COUNT         1111 a         1042 c          971 g          977 t
ORIGIN      
        1 gagtctatac atcgcttcat atgcacaata gggtttcatt tcgcctatgg agtgcaacct
       61 cgatgcccgt ggaaaggcca ctcgtctcat gggaggaagc ctgggggtcc tatttggcat
      121 cggagtcgga gtaatgttcc tgtttggggt aatttcttgg cccattttac catacatctg
      181 cgctgcttcc atctttggag gagggtttgc aatgtttgaa ggatggtctg ggtggtgtgt
      241 cgttcgtgcg attggcatcc gaacaccgct ctgaagacga ttcatctacg catccttcgg
      301 cttgagaaga cactcggatg tggcattgaa atctaattct ctaatcacaa atgagagcgt
      361 ccccccatgc ctagtgaagc gttctaggaa cggacaactc gactcctctt cgaccaattc
      421 caatggactc acattcgata gatcgattgg caactcgatt tcagagaacg caagaacaga
      481 aggttggtcc gtatatgaga ccgcggcatc ctgcatagcg aggaattcga ctgcggaacc
      541 ccatgattca aacatatctg agaaaccaat atcgagttct ttttcacgaa tagattgagt
      601 tactgaattg aaattcggag aattaccact tccagattcg atgatggtaa aaaaacggcc
      661 cccctctatt tcatgagaga aacgagcagg gagatgagtc gctagaacgt cactaagaag
      721 acgggtacca agcatataca gatgactact catgctgttc ttcaagaaaa ggactgttga
      781 tgcatcttga ggagcaccct cgggtggaga ttcaagataa aggcgccaat tactctgtaa
      841 cggagaacgg aaaattctgc gcaatgggcc aaggaatgat gggccgaaat ttccgtgacg
      901 ataagttaga attgtgaatg gagtcaaacc attccgttcc cataatgaaa gaccatttgg
      961 aacaagttcc ttgactgatt ctgtctcaag tagccaagtc gtgtagacca cattagttac
     1021 gtcactcctc aatctaagga acggcataaa cgatgttacg acccttctgc aacgagcaat
     1081 aagagaggaa ttcgccaaga attgagaggg ggtgcgaatc agtccaatac gatgtgaacg
     1141 ataccgatta cctaaccgat caagagtatc aattcggaca tcggtcccca tcttaccaaa
     1201 tctcactaat tcccaagagc acgattgatg acaatacgct gaacttcctg tgtgccttcg
     1261 taaatctgtg taatcttcgc atcacggaaa aagcgctcaa cagggaaatc cgtagtgtaa
     1321 ccatagccac ctaggacctg gaccgcgcgt tcagcaaccc acatcgcagt atcacctgcg
     1381 aagagtttcg ccatgctagc ctcctttgtg tgcctaggac ctccgtggtg gtagtgctgc
     1441 tccttggccc atgccgcacg ataaaccatc aaacgtgccg catccgtctg cgtcgccata
     1501 tctgcaagat agttgccaat ggtctgatgg taagcgattg gttttccaaa ggcctcacgc
     1561 tcatgagcat aacggactgc agcttccaaa gccccctgag caattcccag agcctgcgca
     1621 gcaataccga ttctggaatt atcgagagcg ttcattgcga ttggaaaacc cttccctgat
     1681 tccttaatca tgttctctat cggcacctta cagtcctcaa gaacaagagt gcaggtatcg
     1741 ctacttcgaa ttcccagttt gtcttccttc ttaccaacag agaatccctc gaaggacttc
     1801 tcgacaatga aggccgtggt tccaccatgc ttctttacac cgtaatcagg gtgatcgacg
     1861 tcctttgcaa aaagcacgta tatgtctgca ctgttgccat ttgtgaccca catcttctct
     1921 ccattcagga tgtaatggga cccgtcttcg gaaagtttag ccttgcagac catagcagcc
     1981 gcgtctgtac cagcgccggc ttcagaaagc gaatacgctc cgaccttgtc agcagctaac
     2041 tgagggagat acttcgcctt ctgctcatta ttcccatgta gagaaatcgt catgctacaa
     2101 aggccaacat gaacacaata gtaaacaccg aaggatggat ctacccgaga caattcctct
     2161 acgataatcg cctcagagat gtcgtccaac ggcgtaccac catactcctc aggaattgtg
     2221 caagtatgga ggccatactc gatgaactga gcccattcct cagtaggagg gcgctgttca
     2281 cggtcgcgtt ctaacgcagt aggtgtaaga acggattccg caaagtctct cacaagttct
     2341 ctaatcatgg tctgctcatc cgtctcttcg aagttcatgg cccatccatc caacggtcgt
     2401 ttgtgaatgg ttcggagagg ttgagacgtg gataattcct gtttcaaacg aatgattgaa
     2461 atcagatagc accccggccg cgataaggaa gtgtttgaat gagcgatgat gaggagttta
     2521 cagttgcagt aggacgacga tatacccggg aacatttgtg gttccaactc atcagttctc
     2581 ccaacgagat acccgtggaa tacaaagtcg gaatctctga cttcattcgg gtagaatacg
     2641 gccgcatcat gcgtgccact ctacccaaca tgagcgaagg cggcggattc aggatagtat
     2701 ctgaagaaga gcctgaggaa gaagaaatgc ctctaccacc tcctaccgat gatgatgaaa
     2761 aggtcgaaat cggaatcggt gaactttcca ctgatgacaa cctcgtaggc atccgttgtg
     2821 aattggagac actgaacatt ctctcaccaa tcccctgcac tgtaatcgga ttgaatggcg
     2881 aagtagagaa taccccgcaa ctagtcaacc gtgacgcata tggtgatggt tggctcatca
     2941 acgtccgccc acacgatgga ttcgactttg atgacctcat gactgctgag gaatatgtgg
     3001 actacctcga agaggtttga ttacggccac atatgcgcag gcccatctag atcacctgca
     3061 gcatcccaga ttgattctgc atcagaaaga tctaattcaa tctggacgcg gtaaagtagg
     3121 ctcttaaccc ggccaagttc gggccctgct tccatggata ggcgattaac tatcatgaga
     3181 ccattcacca ggggattttc gcccgccttt aggggggcaa gggccatcaa cgaattatga
     3241 acggaatccg ccagtgaagg atcaagacag cggtctgcag caagttgcgc acccaaatga
     3301 gtgcccagag ctactcggta gcggcgcaac tggcccttgt ccataggatc tgggagttgt
     3361 ccaagtcgtt cacatactgc caacactgca gagcgatcct gcccggacat tcggagaccg
     3421 tcaagtagaa ttgagcggga aactgaatct gttcgccgga gaagaagagc aaaacgtgcg
     3481 atacgaagcg cccatggatt cacttcatcg tcaaaacaat cgtctaaacc ttcaggactc
     3541 gcaactgacc attcggttcc gaaaaccact tgcaggacac catctctttc catccgaacg
     3601 agagtatcct ctacagaagg gtatgtgaga aggcgttcca tttccatcaa caccctctcc
     3661 ttagagacac caacaagaag tgatactgcg ccaccatcat gcagagtatg agcgagagat
     3721 tcgtctggaa gataagggcc ggaggggtgt gccataaacc gatatgcacg tagcaccctg
     3781 aggccgtcct ccttgaatcg cctcattggg tccccaactg cacgaagtat gccattatcg
     3841 aggtcattcc gacctaaatg agggtcgatt aagattcgat tgacaggttc taaggccatc
     3901 gcgttgacag taaagtcgcg tcgttcaaga tcctcttcta tcgatgcccc ataagtcaca
     3961 gaagtaggac gtcgaccgtc gatgtattct ccatctgcac gtagggtagt aatctcaacc
     4021 ggcccatcac tcccccttgg aggaacagta acagtcccaa attggatacc cgtcggtatt
     4081 gcattaggaa tcaaagcaat c
//
LOCUS       DUKB01000181           13163 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_307, whole genome shotgun sequence.
ACCESSION   DUKB01000181 DUKB01000000
VERSION     DUKB01000181.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 13163)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 13163)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13163
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_307"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(75..1349)
                     /locus_tag="HA345_06175"
     CDS             complement(75..1349)
                     /locus_tag="HA345_06175"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012402.1,HMM:NF012872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CysJ"
                     /protein_id="HIH84978.1"
                     /translation="MSEYSNKNPYPSNININYVLNGEGSLKETRHIVFDLGDSGLEYK
                     AGDALGVFPTCPPDLVDLTIERLGCPPDEIVVVKDEEMTLRNALLTKSEIHRLSKRFI
                     QGLSTHFSDSGSSVKMQIVSRTRLDSDGVLLEQWMSAEEGDCPEGYAPLGPVDDPDFA
                     LWSSLVNDDAAMEDYIWSRDYVDLFEDMPSLNLGAQEFVDAVDTLKPRLYSIASSPDH
                     EPGTVHLTVGIVRYSHHGRDRTGLTTGYLADRCPESESTVSVFMSPTRSFVLPEDIST
                     DIIMVGPGTGIAPFRAFLQQRVADGATGRNWLFFGDWTEAGEFYYRDEIESWMEAGAI
                     ERIDLAWSREGSEKVYVQHLMAKHGEEIWSRIDAGGYFYVCGDKLRMAKDVHRTLISI
                     CAEHGGMSEADAAAYVEQRMMKDEKRYLRDVY"
     gene            1455..2237
                     /locus_tag="HA345_06180"
     CDS             1455..2237
                     /locus_tag="HA345_06180"
                     /inference="COORDINATES: protein motif:HMM:NF024118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HIH84979.1"
                     /translation="MASSLRFIGSGNAFCPPGRFHSCVVLDETILIDAPPTILPQLHA
                     AEISSAAITDLMITHWHGDHVFGLPFLLLERRFITNRDESRRLRIHLKASGIERMKAI
                     CELAFPGTLLPVIEERVEWVVNDVGEVGQWSYERFPVFHTPATEPHGYMLRDSNGFTL
                     LHTGDSGPCETIDQRRPESDAVILEMGVPDGAEFPHHHRPIDIVHVAESDPERTFLIT
                     HNYASGAGVETGFKIPALPPNAIQVEDGQKYHLEPRNITLHD"
     gene            2395..3633
                     /locus_tag="HA345_06185"
     CDS             2395..3633
                     /locus_tag="HA345_06185"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH84980.1"
                     /translation="MTNIFEAASRSNSMFSDRRVFDPRHSPSTLRHRDAQVHAMVLNL
                     ADALEGHIPGNMILYGTTGAGKTAAARFVIQQLEERAEAIGSSVTSHEVNAQHTNTRY
                     RVLHSIATRLWEKGDVTIPFTGWPADRVLEETVRRMDRRSGVHVIVLDEMDRLATQSE
                     EQLLYDLTTLGVLLSTARASIIGISNDFSFTDSLTGPIRSRLAAEDIVFTPYTADQVN
                     DILIDRATDGLREGTWDESGIRLCADLAAKEHGDARRAIDLLRVSAQRAEIGDANSIN
                     IEHVISAQAQMEQDRAITLMQGLPEHQKLILMSILINQRNGVHTQNSGTIWETYTQAC
                     SRAGFRPLTSRRVSTIINEFDSAGLAHVRNVFLGRHGRTKHVYSLIPKGIDAIQILSQ
                     DNPGLEAASKGAYKLQKRLG"
     gene            3685..4233
                     /locus_tag="HA345_06190"
     CDS             3685..4233
                     /locus_tag="HA345_06190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84981.1"
                     /translation="MADDAVDEVSPSFIPESPTLGRILTSIGIWALLVDVINVLYGAY
                     AAGQKVVWAGFLTYGYLADNTHVTHDGTVFSSGDMVFTAMALACLGLGFMILQSTEEN
                     GFVGWLQSFLTPDRWTPFFDASNGTNKMIGNWMTLIGLIFYFGWSGMNMTWVDPGVYA
                     ITIPLIGFGIMLPHLDSDAEDA"
     gene            complement(4234..5214)
                     /locus_tag="HA345_06195"
     CDS             complement(4234..5214)
                     /locus_tag="HA345_06195"
                     /inference="COORDINATES: protein motif:HMM:NF025025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HIH84982.1"
                     /translation="MLITIAVCARDAEDWVEDCLSSLCAQDYRPLQIIAVDDGSNDAT
                     LERMQSFLPPSDGGLELLVRSQGRVGLSAGRNRALNEAAGEWIAITDIDCRPDYNWIS
                     TMLTHLSGLEGEDVVALTGRTVFAPGSSRISRLRSEVIAKKYASRDKIVSLANGPCSI
                     FRADMLRSIGGFSPEWFHAEDMEVSIRMIQNGGTILYVPEATVQHVAEEGLLRFLKKR
                     CRDARAHFRIVRRYGFRGVKTSENLTMNHDFISDGAIISLILPMLGLWSLAVKLLCYD
                     YPTIALLGVFVEITMFALPWSRIRILWSVAIWLGVGQGIIDAILGRAGHR"
     gene            complement(5214..6221)
                     /locus_tag="HA345_06200"
     CDS             complement(5214..6221)
                     /locus_tag="HA345_06200"
                     /inference="COORDINATES: protein
                     motif:HMM:NF001985.0,HMM:NF015952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF359 domain-containing protein"
                     /protein_id="HIH84983.1"
                     /translation="MSERIGLLGGTFDRLHVGHHHLIEEVAARCDNLEIHVTSDSMAS
                     AKGNQVQSYDQRFESLSTFIEQTGVQASVHMLDDPFGPAPHREDCVVIGCTSETLDGC
                     ERINQMRLEAALKPLEIVVVAHFIDEAGEILSSSRIRSGIVSPSGNLWIQASDFDTVR
                     YMPAVLDDELKQPLGTLHKGPEDNPSIALESALSTVKDKSMIVAVGDVTVLSLEEGGH
                     IPRVAVIDGYTKRQEWSPSSRIALDESKRFYAVNPAGTLTRSMYEACRDAMDWDGPSV
                     IDVEGEEDLSPIPLILICPLGTVIMYGQPGEGIVVRCVDLAAKYRARRFLDAFQSTES
                     K"
     gene            complement(6560..9100)
                     /locus_tag="HA345_06205"
     CDS             complement(6560..9100)
                     /locus_tag="HA345_06205"
                     /inference="COORDINATES: protein motif:HMM:NF024908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HIH84984.1"
                     /translation="MANPIKATRIRGRHRRLILIQLAVESGTVTEIAQRAGLHVPHVS
                     TELKRMRQEGLIELTDAPGSRGASLALTTSGFNMLESDELSRITEGLFEEQKPKSGAV
                     ISILGRDALLVLSDRVESSVVHLPLIDGSWTIAETRERSSRHYNQMFERMDGHLGSNP
                     ERLEGWLDASFGLLRIRLLDDAVINRIALNRWVEIDTGSYGQEHPLSADPSAWQLGRV
                     GRDGPPAMSVNSVVSQVASDEVSMQLIQIAGNGAFSIGRRRILQRESTPLPLGILADW
                     IEIVHPRLRPQARSSRLVALQDHILRGRTGGRSRRVSDVTLRRFKDDFGGREFTEEWD
                     YDYVTINDLSTTGIQALLIWALNRSISMPLVLDVPTPLPDVLSRRIHRSEDLRLLIAP
                     WSTIQMTRGDRLEHHPIHRLPDLRWIRSDGTEGIVHIGYGAPSLFRPPLGWSVPDSPD
                     ELDDMSTSFTTSMRPPSIEDTLEEQILYACSIHGDGDEKFANSIERVNPLAAWIASSD
                     VNRIDRWQRTHDRMENHWSSLLAINQIPIPRIPEIIWITSDEWRLALDQHLYEVLIVD
                     DEKRSIMRRIALYAEDEKTRSWASGCLLSIAQWLTNNEAADLLRWGIDAWIKSPPIRC
                     SDTLSGVAHLLSVYPESRKGGIEIISESLIRRSYTLPVDHDLQSWRLLMHWNEFGSAP
                     DTRDIIRIIQHLPWSWWSSHAAEVLTILTESEYGRSALSFNPAPWPALLFQPLDSEVA
                     LPLASPGIHPGFRPSLSDRIRRLLSSTRFDEAVQDSLIDAAQAIEDMRADRPPRLGST
                     HRHVGWLCRPVEQWPSSHHLIDVDGSPAIMQLLGRVSAIPPSSTVSVN"
     gene            9385..9636
                     /locus_tag="HA345_06210"
     CDS             9385..9636
                     /locus_tag="HA345_06210"
                     /inference="COORDINATES: protein motif:HMM:NF024378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3860 domain-containing protein"
                     /protein_id="HIH84985.1"
                     /translation="MSENLRILIRSYLQNKPRNTSEIAEHAHANGNNASLEEIEKMLR
                     ADSQVVRVDLVRRSGVLSSGYRICEWASVDWMTNRREQQ"
     gene            9633..9881
                     /locus_tag="HA345_06215"
     CDS             9633..9881
                     /locus_tag="HA345_06215"
                     /inference="COORDINATES: protein motif:HMM:NF024378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3860 domain-containing protein"
                     /protein_id="HIH84986.1"
                     /translation="MRTTRLRERIKRFLAEKGEANTTEILEHVNTTTRHGTTPQQLGN
                     VLSKDKDIEKVSTTKRGGALSGRYDICVWRLREQAGEL"
     gene            complement(9882..11033)
                     /gene="nadA"
                     /locus_tag="HA345_06220"
     CDS             complement(9882..11033)
                     /gene="nadA"
                     /locus_tag="HA345_06220"
                     /inference="COORDINATES: protein motif:HMM:NF006883.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HIH84987.1"
                     /translation="MLEMSVGLPVASCAFDPDEENHRQRIIAAKAALKDRVLILGHHY
                     QRDSIIEHADATGDSFSLSRLAADSTAEHIVFCGVHFMAESADILTDSTQIVSMPTTR
                     AGCSMADMANVPDVEECWATLIDEFGLSDPANREDPDQVAKEEDAFLVPVTYMNSSAA
                     LKSFVGKHGGIVCTSTNARGVLEWALERAGGQGKVLFFPDQHLGRNTALSMGFDEQDM
                     AVWTPGEIWDDSCIQAARFILWHGYCSVHQRFTVDQIDRLRLTHSDAQIVVHPECSRE
                     VVDAADANGSTDYIRRYCDAAPSGSIIGVGTEVNLVERLDAQYQDKSIICLDDSICPC
                     STMYMIHPRFLAEQLEAILRGDINRNVIAVDERTAKNASIALNRMLATQ"
     gene            11080..11745
                     /locus_tag="HA345_06225"
     CDS             11080..11745
                     /locus_tag="HA345_06225"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kae1-associated serine/threonine protein kinase"
                     /protein_id="HIH84988.1"
                     /translation="MGAGMPWSEGPLIHEGAEGLVHLGQWFDGDAVMKVRRPRGYRNP
                     SLDRALTKTRILSELRILRQMHHIGMNTPLILDADIDSGTIIMTRISGLPLFEHLRSP
                     IMSESSAKDVLRSVGAIIRQLHLNGASHGDLTTHNIMWDEKEGVGLIDFGLGRLSPEI
                     EALGQDIQVLNECLSASHPDHPYALEEVLTGYADQQDSGEPSASEVIERFNQIRGRVR
                     YHG"
     gene            11738..12337
                     /gene="rdgB"
                     /locus_tag="HA345_06230"
     CDS             11738..12337
                     /gene="rdgB"
                     /locus_tag="HA345_06230"
                     /inference="COORDINATES: protein motif:HMM:TIGR00042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HIH84989.1"
                     /translation="MVEIKRILFLTSNEGKLREAKHALEPRGYEIVSFVGGTNKVQLV
                     EVQARDLVTVAQSKIEQAESYVGNAHQIDGVMVEDAGFFIDTYPSFPGVYSAHILESL
                     GLEGILQLMHGRKERGAEFQSAIVLQIGTERFVAQGRCRGRLSEDVRGNGGFGYDPLF
                     IPEDGDGRTFAEMSLDEKKALSHRGHAMARLVTLLEDRR"
     gene            12357..>13163
                     /locus_tag="HA345_06235"
     CDS             12357..>13163
                     /locus_tag="HA345_06235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84990.1"
                     /translation="MTLWPRKGGTMASFFRLVLWASLLIGVLGLLSVDLTLNAEMTYA
                     GILLILLAYLMFSGGEPAPQPRKSMSKARIEDDGGDDDEHPDSIESEVPIKRTRGVDV
                     VTEQEESSDEEALVEVQAIVEDVVEAQEYVVEIDAQSMLETEIDTVVETRRTTQDEIR
                     SEVEKRRRRQLAKIRGDTLRSRHIRTGNEELRELIKQSGSVLQIIDEPESPKPGHPYG
                     RILIQIDEKRVIKLRIPLDEGLRAAEEEPALDFGGLPPPPLPGEGGLPLPP"
BASE COUNT         3573 a         3351 c         3163 g         3076 t
ORIGIN      
        1 tcacctcgat tcgcaacgag gacgcggtgg aacatacctc gtcgaaggac aatccggttg
       61 atgataaaat cgggtcagta gacatcgcga agataccgct tctcatcctt catcatccgc
      121 tgctcgacgt acgccgctgc atcggcctca gacataccgc cgtgttcagc gcaaattgaa
      181 atcagagtac ggtgaacatc tttcgccata cgcagtttat ctccacagac atagaaatag
      241 ccacctgcat ctatacggga ccaaatctcc tcaccatgct tggccattaa atgctggacg
      301 tatactttct cggatccttc gcgagaccaa gcaagatcaa ttcgttcaat ggctccagcc
      361 tccatccaag actcaatttc atcacgatag tagaattcac ctgcttcagt ccaatccccg
      421 aagaacaacc agttacgacc cgttgccccg tcagctactc tttgttgaag gaaggcacgg
      481 aatggagcga ttccggttcc aggtccaacc atgataatgt ccgttgagat atcctctgga
      541 agaacgaaac tccttgttgg agacatgaaa acggaaactg tggattcact ctctgggcat
      601 cgatctgcga gataaccggt tgtcagacct gttcgatctc gaccatggtg agaataccgg
      661 acaataccaa ctgtaagatg gacggttcca ggctcatgat ctgggcttga agcaattgaa
      721 tacaagcgag gtttgagagt atccacagca tcaacgaact cttgagcacc aagattgagg
      781 gacggcatgt cctcgaagag gtcgacatag tcgcgtgacc atatgtaatc ctccatggcg
      841 gcatcatcgt taacaaggct ggaccaaagc gcaaaatctg ggtcatccac tggcccaagt
      901 ggggcatatc cttctggaca atcaccctct tcagcactca tccattgctc aagtagaact
      961 ccatcagaat ccaaccgggt tcgggataca atctgcattt ttacactact acctgaatct
     1021 gagaaatgtg tcgaaaggcc ctgaatgaag cgcttagaga ggcggtgtat ctcggactta
     1081 gtgagaaggg cattccgcag ggtcatctcc tcatccttta ctactacaat ctcatccgga
     1141 gggcaaccaa gacgttcaat ggtaagatcg acaagatcag gggggcaagt cgggaagaca
     1201 cccaacgcgt caccagcttt gtactcaaga ccagaatcac cgagatcaaa cacaatatgg
     1261 cgcgtttctt ttagcgaccc ttcgccgttg agcacgtaat tgatgttgat attcgaaggg
     1321 taagggttct tgtttgagta ctctgacatg gaatcgcacc cagtttgagg gggcccacta
     1381 tcggtatttg aagggcttca cctaatatct ctgaggagcg gttgaatcaa atgctggata
     1441 gaaaagcgga ctgtatggcg tcctcactcc gattcatcgg ttcaggcaat gccttctgtc
     1501 cacccgggcg cttccattcc tgtgtcgtcc tcgacgaaac tatcctgatt gatgctcctc
     1561 ccacgattct accccagctg cacgccgccg agatatcctc ggcagccatt actgatctga
     1621 tgattaccca ttggcatgga gaccatgtct tcggactccc attcttactc cttgaacgaa
     1681 gattcatcac caatcgagat gaatcaaggc ggctgcgaat acatctgaaa gcaagtggaa
     1741 tcgagcggat gaaggctatc tgtgaactag cattccctgg aaccttactc cccgtcatcg
     1801 aggaacgtgt tgagtgggtt gtcaacgatg taggggaagt tggccaatgg tcgtacgagc
     1861 ggtttcctgt attccacaca ccggcgacgg aaccgcatgg ctacatgctc cgagatagca
     1921 acggtttcac actcctacat actggcgatt caggcccttg cgaaaccata gatcagagaa
     1981 ggcctgaatc ggatgctgta atcttagaaa tgggagtccc agatggggct gaattcccac
     2041 atcatcaccg tccaatcgac atcgttcatg tagctgaatc tgatccggaa cgaacctttc
     2101 tcatcactca caactatgca tctggagcag gagttgaaac agggttcaag atacccgctc
     2161 tacctccgaa cgcaatccaa gtggaagacg gacagaaata tcatctggaa cctagaaaca
     2221 tcacactgca tgattgatat gtgaagattt aaacacccct aagatacaga aaaatatggt
     2281 tttctttcat ttcttaatgg gcagaattaa gtcattgacg cgggtgtgaa gcaagtccct
     2341 ttgccctatc ccgggaccaa ccgtggacat gggcttggat ttggagtgat tgaaatgacg
     2401 aacatctttg aagcggcgag tcgttcaaac tcaatgttct cagatcgtcg agtctttgac
     2461 cctcgccact ctccctcgac tctccgtcat cgagatgcac aagtacacgc catggtactc
     2521 aacctggcgg acgctcttga aggccacatc ccaggtaaca tgattctcta cggcacgaca
     2581 ggtgcaggga agactgcagc cgcccgattc gtaatccaac aacttgagga aagggcagaa
     2641 gcgattggta gtagtgtgac atcacatgag gtgaatgccc agcatactaa cacccgctat
     2701 agggtgctac acagtatcgc cacccgactc tgggagaaag gcgatgtcac tattccattc
     2761 actggatggc ctgcagacag ggtccttgag gaaaccgttc gtcgtatgga ccgacgatca
     2821 ggagtccatg tcattgttct cgacgaaatg gatcgtcttg caacacaatc cgaggaacag
     2881 ttgctctacg atctaaccac tctgggcgtt ctcctgagta cggcgcgagc ctcaatcatt
     2941 ggaatcagta acgacttctc atttaccgac tcactgaccg gccccatacg ttctcgacta
     3001 gcagcagaag atattgtgtt cacaccctac actgctgacc aagtcaatga cattctgatt
     3061 gatcgggcaa cagatggcct tcgcgaagga acctgggacg aatctggaat caggctgtgt
     3121 gccgacctag ctgcgaagga acatggtgat gcaaggaggg caatcgacct tcttcgtgta
     3181 tccgcacaac gtgcggagat tggtgatgcg aacagtatca atatcgaaca tgtaatcagc
     3241 gctcaagccc aaatggaaca ggatcgcgcc ataacgctca tgcaaggcct tcctgagcac
     3301 cagaaattga ttctgatgtc tatcctcatc aatcagagaa acggcgttca cacccaaaat
     3361 agtggaacaa tatgggaaac ctacactcaa gcttgctccc gcgcgggctt caggccattg
     3421 acatcacggc gtgtatccac aatcatcaac gagttcgatt cagcaggcct cgcacatgta
     3481 agaaatgtat tcctaggccg ccatggaaga acgaagcatg tgtatagcct catcccaaag
     3541 ggaatcgatg caatacagat tctatcccaa gataatccag gcctcgaagc ggcatccaag
     3601 ggtgcctaca aactccagaa aaggcttgga taagacgcag tctcatccgg caacggttaa
     3661 gacgacctct ccggtcgaac ggtcatggcg gatgatgcgg tcgacgaggt tagcccctcc
     3721 ttcattccag aatcgcccac acttgggcgc atcctgacaa gtataggtat ctgggctctg
     3781 ctcgtcgatg tgatcaatgt cctgtatggc gcatacgctg cgggacagaa ggttgtctgg
     3841 gctggattcc taacgtatgg ataccttgca gacaacacac acgtaaccca cgatggaact
     3901 gtcttcagtt caggtgacat ggtgtttacc gccatggctc tcgcctgcct cgggcttgga
     3961 ttcatgattc tacaatctac tgaggaaaat gggtttgttg gatggttgca aagtttcctt
     4021 acccccgacc gctggacgcc tttctttgac gcaagtaatg gaaccaacaa gatgattggt
     4081 aactggatga ccttgattgg actcatattc tatttcggat ggtctggaat gaacatgact
     4141 tgggtcgacc cgggtgttta cgcgattacc attcctctaa tcgggttcgg catcatgctt
     4201 ccacacctcg attctgatgc agaagatgct tgattaccgg tgtcctgcac ggccaagaat
     4261 tgcatctatg atgccttgtc cgactcccag ccagatagca acactccaaa ggattcgaat
     4321 ccgtgaccac ggtagtgcaa acatggtaat ttccacgaat acccccaata gagcaattgt
     4381 tgggtaatcg tagcaaagca atttgacagc aagtgaccat aaccccaaca taggaagtat
     4441 gagggatatg atagcaccat ctgagatgaa atcatgattc atcgtcaagt tttcagatgt
     4501 cttaactcca cgaaacccat atcgccgaac aattctgaaa tgagcgcgag catctcgaca
     4561 tctcttcttg aggaaccgta agagaccctc ctctgccaca tgttggaccg ttgcttcagg
     4621 gacatagaga atggttcctc cattctggat catccggata cttacctcca tatcttctgc
     4681 atgaaaccac tcaggtgaaa aaccaccaat tgaacgaagc atatcagcac gaaaaatgga
     4741 acatgggcca ttggcaagtg acacgatttt atcgcgactc gcatacttct tcgcgatgac
     4801 ctctgaacga agacgagaaa ttcgacttga tcccggtgcg aatacagtcc ggcctgtcaa
     4861 ggcgactacg tcttcacctt ctagaccaga caagtgagta agcatcgtac taatccagtt
     4921 ataatccgga cggcaatcga tatctgtaat cgcaatccat tctccagcgg cttcgttcaa
     4981 agcacgatta cggccggctg atagacccac tcttccttga ctacgaacga gaagttcgag
     5041 accaccgtca gagggtggta aaaatgactg catccgttcc aatgttgcat catttgaacc
     5101 gtcatccact gctatgatct gcaatggtcg gtaatcctga gcacagagcg aggaaagaca
     5161 atcctccacc caatcttcag catcacgcgc acatacagcg atagtgatga gcatcacttc
     5221 gactccgttg actggaacgc atcaagaaaa cgacgagccc tatatttggc ggctaaatcc
     5281 acacaacgga cgacgattcc ctctccaggc tgaccataca tgatgactgt accaagaggg
     5341 cagattagaa tcaaaggaat gggagaaaga tcttcctctc cttcaacatc gatgaccgag
     5401 gggccatccc aatccatagc atctcgacaa gcttcgtaca tagaccgcgt tagcgttcct
     5461 gctgggttga ccgcatagaa gcgtttagac tcatcaagag caatccgaga tgatggactc
     5521 cattcctgcc ttttcgtata accgtcgatg acagcaacac gcgggatatg gccaccctct
     5581 tcgagagaaa gaacggtgac atccccaact gcgacaatca ttgatttatc cttcacagtt
     5641 gaaagagcgg attcaagggc gatggatgga ttatcctctg ggcccttgtg caacgttccc
     5701 aagggttgtt tcaattcatc atcaaggact gcaggcatat accgaacagt atcgaaatct
     5761 gatgcctgaa tccagagatt tccagatggt gagacaatac cgctcctaat tcgtgatgat
     5821 gaaagaatct cccctgcttc atcgatgaaa tgcgccacaa ccacaatttc caacggtttc
     5881 aatgccgctt caagacgcat ctggttgatt cgctcacatc catcgagtgt ttcagaggtg
     5941 caaccaatga ctacacaatc ttcccgatgt ggcgcaggtc cgaatggatc atctaacatg
     6001 tgtactgaag cctgaactcc agtctgttca ataaatgtag aaagtgattc aaagcgttgg
     6061 tcgtaggatt ggacctgatt tcccttcgct gaagccatac tgtctgaagt cacatgaatc
     6121 tcaagattat cgcagcgtgc ggcgacctct tcaatcaggt gatgatggcc tacatggagg
     6181 cgatcgaacg ttccaccaag aaggccgatc cgttcgctca tgcccctagg tagagtcgga
     6241 gtgaattgaa acatccgaca gagtctgtgt cccggggcgt aacttcccgc ttcatcgccg
     6301 tagctcacgg gcctgaccct gccccaggac gtctgtcgga cggattggtt gtcccatgaa
     6361 tcatcccatt cggtcaaccg gggacccata gtccgtccag ccgtcgtttg cctcacggat
     6421 catcccagat ggtccccgtg aacttcgatc gacggcgaat ccccgaacgt ggtaccgaac
     6481 gtcatccttc cttccggcga gggaggtcgt cagcacggtg ttgcagtcgg ggcaagcata
     6541 ctccgactcc gttccgttat caattcaccg atacagtact cgaggggggt atggcggaca
     6601 ctctgccaag cagttgcata atcgcaggag aaccatcaac atcgattaga tgatgagaag
     6661 aaggccactg ctctactgga cgacaaagcc aacctacgtg acgatgcgta gagcctagac
     6721 gaggtgggcg gtccgccctc atatcctcga ttgcttgggc tgcatcgatt aaggaatcct
     6781 gtaccgcttc atcgaatcgg gtagacgata ggagacgtcg aattcgatct gaaagacttg
     6841 gacggaaacc aggatgaata cccggagagg ctaggggcaa agcaacctcc gaatcgagag
     6901 gttggaagag aagagccggc caaggtgctg gattaaatga cagtgctgaa cgaccatact
     6961 cactctcggt aaggattgtg aggacctcag cagcgtgtga tgaccaccat gaccatggta
     7021 aatgttggat gatgcgtatg atatcccttg tatctggggc agaaccaaat tcattccaat
     7081 gcattaacag tctccatgac tgtaaatcat ggtcgactgg aagagtgtag gatctacgaa
     7141 taagagattc ggagattatc tcgataccgc ccttgcgaga ttcaggatac accgatagca
     7201 gatgggcaac acctgacaaa gtatcagaac aacgaatagg tggagattta atccaagcat
     7261 cgatccccca tcgaagcaaa tcagcggctt cattattcgt taaccattgg gcaattgata
     7321 gaaggcatcc tgatgcccaa gaacgcgtct tctcatcctc tgcatacaac gcaattcgac
     7381 gcataatact gcgcttctca tcatcgacga tgagaacttc atagagatgt tgatcaagag
     7441 caagcctcca ttcatccgaa gtaatccata tgatctcagg gattcgtggg attggaatct
     7501 gatttattgc aagtagactc gaccagtgat tttccatacg atcatgggtc ctctgccaac
     7561 ggtcaatccg gttcacatca ctcgatgcaa tccatgctgc caatgggtta acccgttcta
     7621 tcgaattagc aaatttttcg tcaccatcac catgaatgga gcaagcatac aggatttgct
     7681 cctcaagagt atcctcaatc gatggaggac gcatggatgt agtgaaggaa gttgacatat
     7741 catcgagttc atcgggacta tctgggacac tccatccaag aggtggccta aacaaggaag
     7801 gagcgccata tccaatatgc acgatacctt cggttccatc ggaacgaatc catcggagat
     7861 cagggagacg atggatgggg tggtgttcga gacgatcacc gcgtgtcatc tggattgtgg
     7921 accacggtgc gatgagaagt cgtaagtcct cagaacgatg aatcctacga gaaagtacat
     7981 ctggcaacgg agttggaaca tcgaggacta atggcatcga aatcgatcga ttcagagccc
     8041 agataagtag agcctgaata ccagtcgttg aaaggtcgtt aatcgtgacg taatcataat
     8101 cccattcctc tgtgaattct cgtcccccaa agtcatcttt gaatctacga agagtcacat
     8161 cagatactct acgggatcta ccgccggtac ggccacgcag aatatggtcc tgaagcgcaa
     8221 caagccgaga ggaacgggcc tgtggtcgga ggcgagggtg tacaatttct atccaatcgg
     8281 ctagaattcc gaggggcaaa ggtgtacttt ccctctgaag gattcgacga cgaccgattg
     8341 aaaatgcacc attacctgca atctgaataa gttgcatgga cacctcatca gaagcaactt
     8401 gactgactac ggagtttact gacatcgcag gagggccgtc gcgccctact cgtcctaact
     8461 gccaagcgga tggatcggca gacagtggat gttcctgacc ataagatcca gtatctattt
     8521 ccacccaacg gttcaatgca atacgattga ttacagcatc atctaacaat cgaatccgta
     8581 acagaccaaa actagcgtct aaccaacctt ccaagcgttc aggattagac cccaaatgac
     8641 catccatcct ctcaaacatc tgattgtaat ggcgtgaact cctttcacgg gtttccgcga
     8701 ttgtccatga accatcaatc aatggaaggt gtacaacaga agattcgaca cgatcagaga
     8761 gaacaaggag agcatcccgt ccaagaatcg agatgactgc accagatttt ggtttctgtt
     8821 cctcaaacaa tccttcagta atccgtgaaa gctcatctga ctccaacata ttgaatccag
     8881 aagtagttaa tgcaagagat gcccctctac ttccaggggc atcagttagt tcgatgagcc
     8941 cttcctgacg catccgcttg agttccgtcg acacgtgagg gacatgaaga cctgctctct
     9001 gggcgatctc agtcacggtt ccggattcga ctgcgagttg aatgaggata aggcgacggt
     9061 gtcgaccccg aatcctcgtg gccttgatcg gattcgccat tgcgcactca gaagcgtctg
     9121 agcctcattc atatttcaat cttgatatat ttcttattca tcaaatgttt aagttacaat
     9181 ttgttacatc aaagtgagcg agtaggccaa atgttagcaa tggctaatca ttaaatcaga
     9241 aaaataaggt attttctgcg acgaatgtgt aactatcttc cagaatggcg gcggtcattt
     9301 gataaccccc ccgaccatgg cgcttacatc ggctggagtt gtacattgcg acgattgtgc
     9361 cggtagagac ctggaggccc ggaaatgagc gaaaatctca gaattctgat tcgatcctac
     9421 ctccagaata aacctcggaa tacgtccgag atcgcagagc acgcacacgc taatggcaat
     9481 aatgcgagcc tggaggagat agagaagatg cttcgagctg attctcaggt cgtccgcgtc
     9541 gatctcgtac gtaggagtgg tgtgctctct tccggctaca gaatctgcga atgggcttct
     9601 gtcgattgga tgaccaatag gagggaacaa caatgagaac tacaagacta cgagaacgca
     9661 tcaagagatt cctcgccgaa aagggcgagg ctaacacaac tgaaatcctc gagcacgtga
     9721 ataccacgac tcgacacgga accacccctc aacagttggg gaatgttctg tcaaaggaca
     9781 aggacattga gaaggtctcg actacaaaac gcggtggagc actctccggc cgatacgaca
     9841 tttgtgtctg gcgcttgcgt gagcaggccg gcgaactttg atcactgagt cgccagcatt
     9901 ctgttcaaag caattgaggc attcttcgca gttcgttcat cgactgcaat gacatttcga
     9961 ttgatatccc ctctgaggat tgcctcaagt tgttctgcta ggaatcgagg atgaatcatg
    10021 tacattgttg aacaaggaca tattgagtca tcaaggcaga taatcgattt atcttgatac
    10081 tgtgcatcta atctttcaac aagattgacc tccgtaccta cgccgataat agatccagaa
    10141 ggtgccgcat cacaatatct tcgaatatag tctgtggaac cgttagcatc ggcggcatct
    10201 acaacctcac gactacactc aggatggaca acgatttgtg catcagaatg tgtcaaacgc
    10261 aatcggtcaa tctgatccac tgtaaacctc tgatgcacag aacagtaccc gtgccatagg
    10321 atgaatcgag ccgcttggat acagctatca tcccatattt cccctggagt ccacactgcc
    10381 atatcttgct catcgaagcc catactaagt gcagtattcc tgccaaggtg ttgatcaggg
    10441 aagaagagaa ccttgccttg acctcctgct cgttcaagtg cccactcaag cacaccacgc
    10501 gcatttgtag aggtacatac aatgcctcca tgcttaccta cgaaggactt gagagctgcg
    10561 gaactattca tgtatgtcac aggaacgagg aatgcatctt cctccttagc aacctgatcg
    10621 ggatcctctc gattcgctgg atcagacaaa ccgaactcat cgattagtgt cgcccagcac
    10681 tcttcgacgt cgggtacatt cgccatatcc gccatagagc accccgccct cgtagtaggc
    10741 atgctcacta tctgggtaga atcagtcagt atatctgcag actcagccat gaaatggacg
    10801 ccacagaaca caatgtgctc cgcagtacta tctgcagcga gccgcgagag gctaaaggaa
    10861 tcccccgtgg catcagcatg ttcgattatt gagtcgcgtt gatagtgatg tccgagaatc
    10921 aatactcgat ctttcaaggc agccttcgcc gcaataatcc gctgacggtg attctcttca
    10981 tccggatcga atgcgcagga ggccacaggg agtccgacac tcatttcgag catgcgtcat
    11041 tcccggtgca tttgaatcca tcttcttcac cgtagagcca tgggggcggg catgccgtgg
    11101 tctgaagggc cccttattca cgagggcgcg gagggccttg tccatctcgg acaatggttc
    11161 gatggagatg ccgtgatgaa agttagacgg ccacggggat atcgaaatcc aagcctggat
    11221 cgtgcgctga ccaaaacacg catcctcagc gaattgcgaa tccttcgcca aatgcaccac
    11281 attggaatga atactccact aatcctcgat gcagatatcg attcaggaac tatcatcatg
    11341 acgcgtattt ccggcctccc gctgtttgag cacttacgtt cccccattat gtccgaatct
    11401 tctgcgaaag atgttttgcg ttcggtagga gcaatcatca ggcagctcca cctcaatggt
    11461 gcatcccatg gagacctaac cacgcacaac atcatgtggg acgagaagga aggagttggg
    11521 ctaattgatt tcgggctcgg tcgactctca cctgaaattg aagcactcgg acaggatatt
    11581 caagttctca acgaatgcct cagtgctagc caccctgatc acccatacgc cctcgaggag
    11641 gttttgaccg gttacgctga tcaacaagac agtggtgaac catctgcgag tgaggtcatc
    11701 gaacgattca atcagatcag agggcgggtt cgataccatg gttgagataa agcgaattct
    11761 tttcctaacc tctaacgaag gtaaattacg agaagcgaag catgcccttg aaccacgggg
    11821 atacgaaatt gtctccttcg taggaggtac caataaggta caacttgtcg aagtacaagc
    11881 tagggaccta gttaccgttg ctcagagcaa gatcgagcaa gctgaatctt atgttggaaa
    11941 tgcgcatcaa atagacggcg tgatggtcga agatgcagga tttttcatcg atacatatcc
    12001 tagtttcccc ggagtatatt ctgcccatat actcgaaagt ctaggccttg aagggatatt
    12061 gcaactaatg catggacgaa aagaacgtgg tgctgagttc caatctgcaa ttgtactcca
    12121 aatcggaaca gagaggtttg tagctcaggg tagatgccgt ggtcggcttt cggaagatgt
    12181 tcgagggaac ggaggatttg gttacgatcc cttattcatc cccgaagatg gggatgggag
    12241 gacgtttgca gaaatgtccc tcgatgaaaa gaaggctctt tctcaccgtg gccatgcaat
    12301 ggcacgactg gtgacactgc tggaagaccg aagatgaagc accaacctca atacacgtga
    12361 ccttgtggcc tagaaagggt ggaacaatgg catccttctt ccgattggtg ctctgggcga
    12421 gtcttctcat tggagtcctc ggtctactct ccgttgatct caccctaaat gccgagatga
    12481 catacgccgg aatattgctc atcttgcttg catacctgat gttctcagga ggagaacccg
    12541 ctccacaacc acgaaaatcc atgtctaagg cacgaatcga agatgatggg ggcgatgacg
    12601 atgaacaccc agattcgatt gaatcagagg tccccatcaa gcgtactaga ggtgtcgatg
    12661 tagtcacgga gcaggaagaa agctctgacg aggaggccct tgttgaggtt caagcaattg
    12721 tcgaagacgt agttgaagca caggaatacg tggttgaaat cgatgctcaa tcaatgcttg
    12781 aaaccgagat tgatacagtc gttgagaccc gccggaccac tcaggatgaa atccgtagtg
    12841 aagtcgaaaa acgcagaaga aggcagttag cgaaaattcg aggagataca cttcgatcta
    12901 ggcatattcg aactggaaat gaggaacttc gcgaactgat taagcaatct ggaagtgtat
    12961 tgcaaatcat cgatgaaccg gaatcgccta agccaggaca cccctatggt cgaatcctta
    13021 tccaaatcga tgaaaaacgt gtaatcaaac taagaatccc ccttgatgaa ggactccgag
    13081 cggctgaaga ggagcctgct ctcgattttg gaggcctgcc tccaccgcct ttaccggggg
    13141 agggaggact ccctctgcct cct
//
LOCUS       DUKB01000182            6866 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_302812, whole genome shotgun sequence.
ACCESSION   DUKB01000182 DUKB01000000
VERSION     DUKB01000182.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6866)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6866)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6866
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_302812"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..988
                     /locus_tag="HA345_06240"
     CDS             <1..988
                     /locus_tag="HA345_06240"
                     /inference="COORDINATES: protein motif:HMM:NF014466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84991.1"
                     /translation="DVNTDGCGASQRDTDNDGVNDALDECPGTPAATAVNNKGCDVAN
                     QDSDSDGISDVNDLCPDTPYWAKDSVDSDGCALSEKDSDGDGAYDDFDKFPQDPTQIY
                     DSDNDGYGDNESGNLPDGCPFEAGTSTGTPAGCPDLDGDGVADTVDDDTDGDGVVNEE
                     DAFPLDASETIDTDGDALGDNMDPDDDGDGFSDSTEIDCLSDPLDSISVPLDTDGDGQ
                     CDVFEVEDSGNETSSDGGEAEGINAMVIGGAVGLVVIIIAGIIGAMMFLSKDEDTPLG
                     TAAAVSTSTTQAEGQQGQMIPTGKNCTQCNAPGVVHIPAYGRDYCSTCGQYN"
     gene            complement(1021..2670)
                     /gene="pyrG"
                     /locus_tag="HA345_06245"
     CDS             complement(1021..2670)
                     /gene="pyrG"
                     /locus_tag="HA345_06245"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HIH84992.1"
                     /translation="MKYVVVSGGVLSGIGKGVTASSIGVLMKSLGLRVTAIKIDPYLN
                     SDAGTMSPFEHGEVFVLDDGGEADLDLGNYERFLDVTLSRDNNLTTGKIYSDVIGKER
                     KGDYLGKTVQVVPHITDEIQDWIERVAHTPADGTGEVPEICVIELGGTVGDIESAPFV
                     EALRQFQFRVGSNNICFLHVSLVPVIGVVGEQKTKPTQHSVKELMASGIQPDFLVCRS
                     SEPLLPEVKRKLSLFCHVSEEAVFSAHDVSNIYRVPLMLEEQGAIVQMASHFGLDIPA
                     ERPQLRDWGEMAQRMDDLSGEVRIAMVGKYTGLSDSYLSVIKALQHSALHEGVNLSID
                     WVEASNLENSNEGTDKHESAWSLVKGADGILVPGGFGDRGIEGKILAAKHARENTVPY
                     LGVCLGLQIATIEFARNRLGLKGANSTEFDEDTPHPTVIFMPEGSRTHMGGTMRLGSR
                     QTNLQTQDCAAYRLYDGEMEIHERHRHRYEVNPDLVTAFEEKGLRFVGRDTEGERMEI
                     IELEGHPFFFGTQYHPEFKSRPGRPSPPFLGLVKAALGRPV"
     gene            2789..3718
                     /locus_tag="HA345_06250"
     CDS             2789..3718
                     /locus_tag="HA345_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014032937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HIH84993.1"
                     /translation="MGTVPTRILVTGALGQIGTELVESLRDKYGHEAVISTDVRESEG
                     CIQLDVMDSKRIEDLVQSKGITDIYHLAALLSATGEKNPDLCWSINVDGLVNVISVAK
                     KHNCRLFSPSSIAVFGPECPKHAPQVTGLNPTTMYGKTKVVGEQLAMTSDIDMRGLRY
                     PGLISWKAPAGGGTTDYAVEIFHAALSDGYYNCFVREDTRLPMMYMDDAIRATLELME
                     APLDSLSGARGGYNIAGCSFTVGELVESIRRHIPEFTCNYEPDVRQNYADSWPDSIED
                     NVARKEWGWVPEFDLDHIVDEMMVNLRNSQSSS"
     gene            complement(3703..5310)
                     /locus_tag="HA345_06255"
     CDS             complement(3703..5310)
                     /locus_tag="HA345_06255"
                     /inference="COORDINATES: protein motif:HMM:NF012346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit"
                     /protein_id="HIH84994.1"
                     /translation="MARREHERILQDTEREQGHTALRNNVRAALALADAVRSTIGPLG
                     LDKMLISDEGDVQVTNDGVTVLEAAKVEHPTARMLISTSSVQDDEARDGTSSAIVLTA
                     ELLLNALDWIDRGIHPSVMVAGYRIAMDHSLIAIEDISRPMEEADNIRIVSTSLAGKV
                     GEDVRRILSNLAVETASIAADRGSSKHVDPDLIKRIIIRGGRIADCERVDGIVLRKTR
                     LDSQTPSRLDGGKVLLLDGGLDPKELSVNASIRITEPGMMARFLQRQKQEMKERVDAI
                     AEAGIDLLIVRDGIHEGAIPILRDAGIVTYRRVERTDLELIASACGARIVRDVQGIRS
                     ESIGEFNSVNEERWESIDHVRIHGSVGSGQTVVLRGSTDAVIDEVSRAFDDAIGVACG
                     LQEEPKMLPGGGAIQIALARRLRAHATSIPGREQLAVEAYAAALESIPRALAENSGLD
                     GLDQIIAITAAQTSSSNDWLGIDVTDRSIYPMNERGVLEPVRIARQAIIGATESAISV
                     LRIGDILWAKQDAQMPDWQSDINQDED"
     gene            5440..6054
                     /locus_tag="HA345_06260"
     CDS             5440..6054
                     /locus_tag="HA345_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84995.1"
                     /translation="MTEDWEENLIQQLLDMFKQLGLDMNKEQLTGLIDQVRGQFEGMG
                     IDMERLQSGEATVDAQANMEALAKALSTLMSEGDGIGNLFETMGFKVDVQASTPVTID
                     PSTPESTDSIDIDVPDADILIHQGRMTLTIDLANSLEEGIGIDLALTDSGRTLQIIKT
                     NQLRPFRRISLDPAAGKIVAWDLNNGILDVELEIENGDGTIHIG"
     gene            6069..>6866
                     /locus_tag="HA345_06265"
     CDS             6069..>6866
                     /locus_tag="HA345_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015044598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HIH84996.1"
                     /translation="MSGPVIGIDLGTTNSCVATLEGGDPIVIANAEGARTTPSVVAFS
                     KDGERLVGVTAKRQAVTNSERTILSVKREMGTNWSKNVDSDDYTPQEISAFILQKLKA
                     DAEAYLGHEVKQAVITCPAYFSDAQRKATQDAGRIAGLDVLRIINEPTAAALAYGVDK
                     DDDQTILVYDLGGGTFDVSVLEIYQVDDQPQIEVKATSGDNRLGGDDFDEAILDHIVA
                     EFKKSTGIDLAKDLQAISRVREAAEKAKIELSSAEQTDINLPFITADK"
BASE COUNT         1883 a         1715 c         1630 g         1638 t
ORIGIN      
        1 tgacgtcaat acagatggat gtggagcaag tcagcgagac accgataacg atggtgtaaa
       61 cgatgctcta gatgaatgcc caggaacacc tgcggctaca gcggttaaca acaaaggatg
      121 cgatgtggct aaccaagatt cggacagtga tggcatcagc gatgtgaatg atctttgtcc
      181 tgatacccca tactgggcga aagatagtgt ggattcagat ggatgcgccc tgtctgagaa
      241 agacagcgat ggtgatggtg cctacgacga cttcgataag ttcccacaag atcctacaca
      301 aatctacgac tcagacaatg acggttatgg ggacaacgag agtggtaact taccagatgg
      361 atgtcccttc gaagccggga cctcaactgg gactcctgca ggttgtcccg acctcgatgg
      421 agatggggtt gcagacactg tggatgatga caccgatggt gatggagtag taaacgaaga
      481 ggatgcattc ccattagatg catcagagac aattgacacc gatggggatg cccttggaga
      541 caatatggac cctgatgacg atggcgatgg attctcagac tcaactgaaa tagactgtct
      601 ctcagacccg cttgacagta tctctgtgcc tctggacacc gacggagatg gccaatgtga
      661 tgtttttgaa gtcgaagata gtggtaatga gacgtcttcg gatggtggag aagccgaagg
      721 aatcaacgcc atggtcatcg gcggagctgt aggattggta gtcataatca tcgccggaat
      781 cattggtgcc atgatgttcc tctctaagga tgaagataca cctcttggaa ctgctgcggc
      841 agtatccact agtactacac aggccgaagg acaacaggga caaatgatcc cgactggaaa
      901 gaactgtacc cagtgcaatg caccaggagt ggtccacata ccagcctacg gacgagacta
      961 ttgttctaca tgcggccagt acaattgatc ccatggtact gtcttttcga gatttaaatc
     1021 tcaaacggga cggcctagcg ctgccttgac caaaccaagg aacggtggac tggggcgccc
     1081 tggacgtgac ttgaattcag gatggtattg agtaccgaag aagaaaggat ggccctcaag
     1141 ttcaatgatt tccattctct cgccttcagt gtcacggccg acgaatcgta agcccttctc
     1201 ctcaaaagca gttaccaaat ctggatttac ttcgtatcga tggcgatggc gctcatgaat
     1261 ctccatttct ccatcataga ggcgataagc tgcacagtcc tgtgtctgaa gattcgtctg
     1321 acgactaccg agtcgcatcg tcccacccat atgagtacga cttccctcag gcatgaatat
     1381 gaccgtgggg tgtggagtat cttcatcgaa ctcagtgctg ttggcaccct ttagaccgag
     1441 acgatttcga gcgaattcaa tcgtcgcaat ctgaagacct aagcagaccc caagatatgg
     1501 aacagtattc tctcgagcgt gctttgcagc gagaatcttt ccttctatgc ctcgatctcc
     1561 aaatccgccg ggaacaagaa tcccatcagc acccttcacc aatgaccatg ctgactcgtg
     1621 cttatccgtg ccttcgtttg aattctctag attactagcc tctacccagt caatcgagag
     1681 gtttacgcct tcatgtaaag cagaatgctg gagtgccttg attacactca gataggaatc
     1741 tgacagcccg gtatacttgc caaccatcgc gattcgaacc tccccgctaa ggtcatccat
     1801 tctctgggcc atttctcccc aatccctcaa ctgaggacgt tcagcaggga tatcaagacc
     1861 aaaatgggac gccatctgta caatggcacc ctgctcctcg agcatcaacg gcacacggta
     1921 gatattcgac acatcatgag cactgaatac agcctcttcg gacacatggc agaacaagga
     1981 aagttttcgc ttcacctcag ggagtagagg ttcagaggac cggcatacga ggaagtcagg
     2041 ctgaattcca gaggccatca gctccttcac tgagtgttga gttggctttg tcttctgctc
     2101 gccgaccaca ccaattacgg gaacaaggct cacgtggagg aaacatatgt tgttgctacc
     2161 aacacggaat tggaattggc gcaatgcttc gacaaatgga gcagattcga tgtcacccac
     2221 agttccacca agctcaatta cacaaatttc cggaacttcg cctgtcccat ccgcaggcgt
     2281 atgagcgact ctctcaatcc aatcttgaat ctcatcagtg atatgtggga caacctgcac
     2341 agtcttaccg agataatcgc cctttctctc cttcccaatg acatcagagt atattttccc
     2401 agtagtgagg ttgttgtcac gagaaagtgt cacatcaagg aaacgttcgt aattccccaa
     2461 atcgagatcg gcctccccac catcgtcaag gacaaacact tcaccgtgct cgaaaggact
     2521 cattgtgcct gcatcagagt ttagataggg atcaatcttg atagcagtca ctcgcaaacc
     2581 gagggacttc atcagaactc caatgctact ggcagtcaca cctttgccaa ttccactgag
     2641 tacaccaccc gagaccacga catacttcat gcaatcaacg ggatttggag ccgtccacgt
     2701 tggcctatca aggttgtctg gaatgtggaa ggattccgtt tcatcctcta ttgtcaatca
     2761 tcaagtatcg gacttgccgt ctatacccat gggcacggtt ccaacccgga ttctagtgac
     2821 cggggccctc ggccagattg ggacagagtt agttgaatcg ctacgagata aatacggaca
     2881 tgaagcagtc atatccacag atgtccgtga atctgaagga tgcatacaac tcgatgtaat
     2941 ggattctaag agaatagagg atttagtcca aagcaaggga atcactgaca tctaccatct
     3001 cgctgcccta ttgtctgcaa ctggagaaaa gaaccctgat ctctgttgga gtatcaatgt
     3061 agacggactc gtaaacgtaa tctccgtagc aaagaaacac aattgtcgac tattctcgcc
     3121 atcctcaatc gcagtattcg gacctgaatg tccaaagcat gcccctcaag taactggatt
     3181 gaatccgact acgatgtatg gtaaaacgaa ggtcgttggc gaacagctag cgatgacatc
     3241 tgacattgat atgcgtggac ttcggtatcc aggcctcatc tcgtggaaag caccagcagg
     3301 gggagggacc acggactatg ctgtggaaat attccacgcg gctctctctg atggctatta
     3361 caactgcttc gtccgcgagg atactcgact tccaatgatg tatatggatg atgcaatacg
     3421 tgcaactttg gaacttatgg aagcccctct tgattcattg agtggagcgc gtggtggata
     3481 caacatagca ggttgctcat tcacagtagg ggaacttgtc gaaagtattc gccgtcatat
     3541 ccccgaattt acctgtaatt acgaaccgga tgtaagacaa aattacgctg attcatggcc
     3601 ggactcaatc gaggacaatg ttgctcgaaa ggaatgggga tgggtgcctg aatttgatct
     3661 cgaccacatc gtggacgaga tgatggttaa tctgagaaat tctcaatcct catcctgatt
     3721 gatatccgat tgccagtcag gcatctgagc atcctgcttt gcccaaagaa tatctccaat
     3781 tcgaaggaca gaaattgccg attcggttgc tcctatgatc gcttgacgag ctattcgaac
     3841 tggttcgaga actccacgtt cgttcatagg atagatggaa cgatctgtta catcgatacc
     3901 aagccaatca ttggaggaag aggtctgcgc agcagtgatg gcgattatct gatcaagacc
     3961 atcgagacct gaattctctg caagtgctct gggaattgat tcaagagctg ctgcgtacgc
     4021 ttccacagca agttgctcac gtccaggaat cgatgtcgca tgagcacgaa ggcgacgggc
     4081 aagagcgatt tgaattgctc ctcctccggg aagcatcttg ggttcctctt gcaaaccaca
     4141 agcaacacca atggcatcat caaacgcacg tgacacttcg tcaattactg catctgttga
     4201 gcctcgcaat acaacagtct gacccgaacc cactgatccg tgaattcgaa cgtgatcaat
     4261 actctcccat ctctcttcat tcactgaatt aaactcacca atgctctctg aacgaatacc
     4321 ttgaacgtcc cgaactattc gggcaccaca ggcacttgca ataagttcga gatcggtgcg
     4381 ttccactcta cgataagtga caatgcctgc atcacgaagt attggaatcg caccctcgtg
     4441 gattccatct cttacaataa gcaaatcaat acccgcttcc gcaatagcat ccactcgttc
     4501 tttcatctcc tgcttctgtc gctggaggaa gcgagccatc attccgggct ctgtgattcg
     4561 aattgaggca ttgacactga gttccttcgg atccagccca ccatcaagca agaggacttt
     4621 gccaccgtcc aatcgactag gagtctgtga atcaagacga gtcttacgga gaacgattcc
     4681 gtcaacacgc tcacaatctg caattcgacc acctcggatg attattcgct tgattaggtc
     4741 gggatcaaca tgcttagatg agcccctatc cgctgcaatg gaggccgtct caactgcgag
     4801 attcgaaaga attcggcgaa catcctcacc cactttaccc gcaaggctag tcgaaacaat
     4861 tcggatatta tccgcctcct ccatgggcct cgatatatcc tctattgcga ttaggctgtg
     4921 atccatcgca atcctatagc ccgcaaccat gactgatgga tgaatacctc gatctatcca
     4981 atctaatgcg ttgagtaaga gttctgcagt gagtacaatt gcgctactcg taccatctcg
     5041 agcttcatcg tcctgaacgc ttgatgttga tatcaacatt cgagccgtag gatgctctac
     5101 tttcgctgct tcaagaactg tgacaccatc attggtgacc tgaacatccc cctcatcgga
     5161 tatgagcatc ttatccaaac cgagaggacc aatggttgat cggaccgcat ccgctaacgc
     5221 caacgctgca cggacattgt tgcgaagagc agtgtgccct tgttctctct ccgtgtcttg
     5281 gaggatgcgt tcatgctctc tgcgtgccat aggaacatca caccgaccga ggatttgcac
     5341 ttgaacccaa tgcgggagat ttggcgcttt cacgaatggt tcatatagag tcgtccgaat
     5401 tggacattac aactcgaggt tgtatagtag ggattggaga tgactgaaga ctgggaagag
     5461 aatctaatcc agcaactcct agacatgttc aagcaattag gcctcgatat gaacaaggaa
     5521 caattgaccg gtctaatcga ccaagtccgt ggccaattcg aaggcatggg tatcgacatg
     5581 gaacgactgc aatctggtga agccaccgtg gatgcacaag ccaacatgga agcactggcc
     5641 aaggcactca gtaccctcat gagtgaaggt gatggaatcg gtaatctgtt tgagacaatg
     5701 ggtttcaaag ttgatgttca ggcctcaacg cctgttacca tcgaccctag tactccagaa
     5761 tccaccgatt cgattgacat cgacgtaccc gatgcagaca tactaatcca tcaaggtcga
     5821 atgaccctta ccatcgatct cgccaactcc cttgaagaag ggattggtat tgatctcgct
     5881 ttgacagata gtggtcgaac gctacaaatt atcaagacaa atcaattgag gccttttcga
     5941 cgaattagcc tcgatcctgc tgcaggaaaa atcgtagcat gggatctcaa taatggaatt
     6001 ctcgatgtcg aattagaaat cgagaacggt gatgggacaa tccacattgg atgaatggag
     6061 gaataaacat gagtggacct gtaattggaa tcgacctggg aacaacaaac agttgcgtag
     6121 caacactcga aggaggggac ccgatcgtca tcgcgaacgc agagggagcg aggaccactc
     6181 ctagcgtagt cgcatttagc aaagatgggg agcgtctagt tggcgttacc gcaaagaggc
     6241 aagcagtcac aaattcagag cgtacaatcc tctccgtaaa gcgtgagatg ggtactaatt
     6301 ggtcgaagaa cgtcgattct gatgattata ctccacagga aatatctgca ttcatcctac
     6361 agaagttgaa agccgatgct gaggcttacc ttggtcacga agttaagcaa gccgtcatca
     6421 catgtccagc atacttcagt gatgcacaga gaaaggcaac ccaagatgca ggacgtatcg
     6481 ctggacttga tgtcttgaga atcatcaacg aaccaactgc agctgcactc gcctatggtg
     6541 ttgacaagga cgatgaccaa acaattctcg tctacgacct tggtggtgga acatttgacg
     6601 tatctgtcct tgaaatctac caggtggatg accaacctca gattgaagtg aaggccactt
     6661 caggagacaa tcgcctcggc ggagatgact ttgacgaagc gattttggac cacatagtag
     6721 ccgaattcaa gaagtcaacc gggatcgatc tcgccaagga tttgcaggca ataagtcggg
     6781 ttcgtgaagc tgctgaaaag gcaaaaatcg aactttcgtc agccgaacaa acagatatta
     6841 acttaccatt tataactgct gacaaa
//
LOCUS       DUKB01000183            3725 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_356612, whole genome shotgun sequence.
ACCESSION   DUKB01000183 DUKB01000000
VERSION     DUKB01000183.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3725)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3725)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_356612"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            21..>310
                     /locus_tag="HA345_06270"
     CDS             21..>310
                     /locus_tag="HA345_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84997.1"
                     /translation="MGKHVYDLDANTESLENDMNPGETWAVPINIRNDGNGPDRYDMR
                     VTEIADSQGLAQPWDVEIFRSDMSELVRDSNQTVMVHVNAPAEVAAGDYQITL"
     assembly_gap    311..613
                     /estimated_length=303
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <614..1889
                     /locus_tag="HA345_06275"
     CDS             <614..1889
                     /locus_tag="HA345_06275"
                     /inference="COORDINATES: protein motif:HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH84998.1"
                     /translation="AGDYQITLSIFSEEAFDGTRLRDIIPLTVTINEFHDIQLSLDPF
                     VESAVKTTAPGRTVRFILNLTNNGNVPDIPTLHNHTKKGDGVWDPAPGLNALAGWASS
                     DGTAQAVEFAILDGFETEYPIELACLTIASGETPPVYECYYDEFTGTWNFPPMPAYTT
                     IQIVAIINVGSDAALGDQSMGIKALSEFGDSFDGGDHDETPEWADSCSIDSDEDGLPD
                     NDIGCDTNEQILHLRLRAPDLIFVGDPSIGDTSKEVGEMIPVTVQIQNIGNVHATDVN
                     IILCVGEVDDIKAEGCSEENIVYRRVIGALMLTSPDASSEAPAITLLYPVTAGSDHVV
                     VVIDPEQTIVESSDDNNYLDIQDDLQSENPIMDVALVVVSKWSVPTIIMGATAALIGV
                     AGLMMISRRKEALDRVAEQSSILQSADEDARF"
     gene            complement(1932..2690)
                     /locus_tag="HA345_06280"
     CDS             complement(1932..2690)
                     /locus_tag="HA345_06280"
                     /inference="COORDINATES: protein motif:HMM:NF024248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HIH84999.1"
                     /translation="MIGFEAALDILSNDTRREILRRLVREPHYGWQLASQLDVSQQAV
                     VKHLNVLEGAGFVNSEKVASEKGGPPKRIYSVKQSFSLRMDLGPDLFRTKHSQLPRGG
                     PLNISNVHGLPDTAIQIATHIGGRRRLAISEAAECITHIQEMLDRLDEQRNALVALHQ
                     HVMKRVSRSVEGEFEDYQERSIVHTMLEDPRRPFDLDAMAVAMAPRGLSMEGVEWNFD
                     QLMSGIIPRIGMMDSETFLPVTNNTPLPWWLVQR"
     gene            complement(2757..3596)
                     /locus_tag="HA345_06285"
     CDS             complement(2757..3596)
                     /locus_tag="HA345_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85000.1"
                     /translation="MAEKSGRSWARLVTIVAAGLLTISLIAFVTSMDAVEDILDPEKL
                     NIGIVDVSDSLDLELQSGRTYTLLRIVDNVGDDALENDLKIVDSEGNEMILDAPTWMH
                     PPRTGESGTVVYDTIATYSNEKTGMFTFENLNSTSNLFVVDDHEGDLAATREPVLLIA
                     SFSCCFGMLLLPIAGIIQLLTRKKQQQNLGNPIMTMPQNTIPTTDELFLIRQGVMMPE
                     DAKGVKQVKEVPPPFTDNSDKNQTIIQNITISDSVVMGDVTNSSSKKQDDDEDDWKAW
                     DTG"
BASE COUNT          927 a          781 c          784 g          930 t
ORIGIN      
        1 atgaggtaat tctctcgact atggggaagc atgtgtacga tcttgatgcg aacacggaat
       61 ctctagagaa tgatatgaat ccgggagaga catgggcagt accaatcaac atcagaaatg
      121 acggcaatgg accagatcgc tatgatatgc gtgtgactga gattgcagat tcacaagggt
      181 tagcacagcc atgggatgtc gaaatcttcc gatcagacat gagtgaatta gtacgtgaca
      241 gcaatcagac agtcatggtt catgtgaatg ctcctgcaga agttgcagca ggcgattacc
      301 aaatcaccct nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnagcaggc gattaccaaa tcaccctctc aatattctcc gaagaggcat
      661 ttgatggaac ccgtcttcga gacatcattc cattgactgt gacaatcaat gagttccatg
      721 atatacaact ctcactggat ccattcgttg agagcgccgt caaaactacg gcgccaggcc
      781 gaacagtccg attcatcctc aatctgacaa ataatggaaa cgtccccgac attccaactc
      841 tccataacca cacgaagaag ggcgatgggg tatgggatcc agcacctgga ttgaacgctc
      901 tggcaggttg ggcatcgagc gatggaacag ctcaggcagt cgagttcgca atcctagatg
      961 gtttcgagac agagtatcca attgaattag cctgtctcac aattgcaagt ggagaaaccc
     1021 cgccagtata cgagtgctac tatgatgagt tcactggaac ctggaacttc ccaccgatgc
     1081 cagcttacac cacaatccag attgtagcaa tcatcaatgt tggtagtgac gcagcacttg
     1141 gtgaccaatc gatgggaatc aaagccctct ctgaatttgg cgattccttt gatggtggcg
     1201 atcatgatga gacccctgaa tgggcagact cctgctccat cgattcggat gaagatggct
     1261 taccggacaa cgacattggt tgcgacacca atgaacaaat cctccatctc cgccttcgag
     1321 caccagatct gatatttgta ggtgatccat ctattggaga cacgagcaag gaggttggtg
     1381 aaatgattcc agtaacggtt cagattcaga acattggcaa cgtccacgct actgacgtca
     1441 acatcattct ttgtgtaggt gaagttgatg atatcaaggc agaaggatgt agtgaggaga
     1501 acatcgtcta tcgacgagtt attggcgctt tgatgctaac tagtccagat gcaagtagcg
     1561 aggctccagc aattacactg ctttatccag tgactgcagg tagtgaccac gtggttgtag
     1621 tcattgatcc tgaacagaca attgttgaaa gcagtgatga caacaattac ctcgatattc
     1681 aagatgatct tcaatctgag aatccgatta tggatgtggc tcttgttgtt gttagcaaat
     1741 ggtccgttcc aaccatcatt atgggtgcta cagctgcctt gattggcgta gcaggcctga
     1801 tgatgatatc acgtcgtaag gaagccttgg atcgcgttgc agagcagagt agtattctcc
     1861 aaagtgccga tgaagatgca cgcttttgat gacaacgtat ccacttaatg ggatactgag
     1921 ttagaagagc gttagcgttg tactagccac caaggtaggg gtgtattgtt agttactgga
     1981 agaaacgtct cactatccat catcccaatt cgtgggatga tgccactcat caactggtcg
     2041 aaattccatt ccacaccctc catgctcaat ccccttggag ccatggctac tgccattgca
     2101 tcgaggtcaa aggggcgtcg aggatcttcg agcattgtgt ggacgataga acgctcttga
     2161 tagtcttcga attcaccttc gaccgatctt gagacacgtt tcatcacatg ttgatggagg
     2221 gcaaccagtg cattcctttg ctcatctaaa cgatcgagca tttcttggat atgagtaata
     2281 cattctgcag cttccgaaat agcaagcctc cgcctaccac caatatgtgt cgcgatttga
     2341 attgcagtat ctggaagtcc gtgaacattg gagatattca atggaccacc acgtggtaat
     2401 tgtgaatgct ttgttctgaa taaatccggt ccaagatcca ttctcaggct gaaggattgt
     2461 tttacgctgt aaattcgctt tggaggacca cctttctcag aagcgacctt ctcggaatta
     2521 acgaacccag caccctcgag cacattgaga tgcttgacta cagcttgttg acttacatca
     2581 agttgtgatg cgagttgcca accgtagtga ggctcacgaa cgagacgcct gagaatttct
     2641 cgccgtgtat cgttgctgag gatgtcgaga gcggcttcga atccaatcat tgctccccaa
     2701 cctatggttg tgtagtggaa ggactagtaa aaactcgatg ctatgtcgta gataccttaa
     2761 ccggtatccc aggccttcca atcatcttca tcatcatctt gtttcttact gctagaatta
     2821 gtgacatcac ccataaccac tgaatcgcta atcgtaatat tctgtattat agtttgattt
     2881 ttatctgaat tgtcagtgaa aggtggaggc acctccttca cttgcttaac acccttcgca
     2941 tcttcaggca tcatcacccc ttgccgtatc aagaataact catcagtggt tggaatggtg
     3001 ttctgaggca tcgtcattat tggatttcca aggttttgtt gctgcttttt tcgggttaac
     3061 agttgtataa ttcctgcgat tggaagtagc aacattccga agcaacaaga gaaggaagca
     3121 atcaagagaa caggctctcg ggttgcagca agatcacctt cgtgatcatc gacgacaaac
     3181 aaattggatg tactattgag attttcaaaa gtaaacatcc ccgttttttc attagagtat
     3241 gtggcaattg tgtcatagac gacagtacca ctttccccag tccttggcgg atgcatccac
     3301 gtgggtgcat caagaatcat ctcattacct tcagaatcaa cgattttcaa atcgttttct
     3361 aatgcatcat ctccaacatt atcgacgatt cgtaagagtg tatacgtcct tccagattgt
     3421 aactctagat ctagagaatc acttacatca acgataccga tgttcagttt ttctggatca
     3481 aggatatctt ctacagcatc catggaggtt acaaatgcga ttaaggaaat tgtgagtaga
     3541 cctgctgcta cgattgtgac caagcgggcc caggatcgtc cgctcttctc cgccatgtta
     3601 tccaactgta gggggtttct cttgagttct cgtcttgatt aggtatactt cagatactca
     3661 aaccatattc tgctagtttt tccgggaggt aggtatcagt gacgaaatca agaccgtatt
     3721 ttgca
//
LOCUS       DUKB01000184            7401 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_274243, whole genome shotgun sequence.
ACCESSION   DUKB01000184 DUKB01000000
VERSION     DUKB01000184.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7401)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7401)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7401
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_274243"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(61..768)
                     /locus_tag="HA345_06290"
     CDS             complement(61..768)
                     /locus_tag="HA345_06290"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013570.1,HMM:NF019585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanyl-tRNA editing protein"
                     /protein_id="HIH85001.1"
                     /translation="MDTEARLLIHPSGQPSPFTSTVTDINEDWIRLASTEFYPTGGGQ
                     PHDTGSMSWNEGRCQVIDVKGRNEVLHHVEGELPVVGTIVDCSIDAPRRIRLAQMHTA
                     QHLASALAHEVWGAETVGNQIGIETTRIDLKFENRDAFDPLDLIERINDEIRSNHAVR
                     MDHRSLDNLRNDPNVRISLDRIPNVASLRTIEIEDIDVCPCAGTHVGFTGEIPEVAFD
                     ASKSKGAGKLRVSYRFA"
     gene            complement(771..1076)
                     /locus_tag="HA345_06295"
     CDS             complement(771..1076)
                     /locus_tag="HA345_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85002.1"
                     /translation="MSDASPSYESFESCPDCGALSRIGTVRCPECGRFHANIHIRQEA
                     TVEDARREARTRSSTEVDPSLYSLDPSAAIDIDGDEDIEDVSRPWDGGSTDFRFEEE"
     gene            complement(1080..3257)
                     /locus_tag="HA345_06300"
     CDS             complement(1080..3257)
                     /locus_tag="HA345_06300"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024600.1,HMM:NF025203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85003.1"
                     /translation="MADDEKDMATCGACQTEVPADSESCPNCGVSFSGVVEDNLGECG
                     ACSALVPLDSKTCPQCGVLFVHDDVVAVLADWMTSTGLDVETLFGRLDTDGNGHIDTE
                     ELRTGLIALKIAALPPVEVDRLVAEIDQDNNGEIELGELQFILSSGSMQYAESVLNRV
                     MKKHDISDADAFIQFARAFDENENRYLDQKELKKAAEAFVDKPEPEMVDEPEDVEEDE
                     VEDESPDEAEDVEADSEKSEEEETEEATESEETEDSDADEEMDSAFATMISESTNEEA
                     VEAEDDESEDDADSDDDSDDDEEPEFSGKGRSFDPSSLIDDDDEDVDDDDEEESSDDM
                     DDLIDSIDDDDDDDDDGSDDEDTDDESEEEELAPMDQESADGIMLEIGRNLNESNTTI
                     DALFEGFDVDESGELDHYEFAEGLKTLDLADLPPHEIDRIVKFLDTDDNGKIDLNELR
                     SNFNEWNVPISDLKPKRFEPAGWQKFFMKQYENVFPIMYVLLALLIAGLLINALVGPV
                     DGSGGNVAFDGQVGEFSVENNFYVEPGEIYPCDKAIQLTNCANSLTPLAGENGSSSMP
                     KKFYWDGIVGMVLGIGLLIGSVYLQLQTKGWREIVRAERKGDSEDSEDDEDSTEDGST
                     DTDDTDEEESEEAPDEDTDDAEDAEVDDAEDEESDESDEAVEDGGDGIDVGDRVGVEL
                     EDGEEAFGEILEFIEEDDEEFVVVLLDDGDEVEVEFDMIFLEE"
     gene            3393..4274
                     /locus_tag="HA345_06305"
     CDS             3393..4274
                     /locus_tag="HA345_06305"
                     /inference="COORDINATES: protein motif:HMM:NF017570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF835 domain-containing protein"
                     /protein_id="HIH85004.1"
                     /translation="MSDGVLEPGTVRLAPSIDPVTSLIALHRTHGKLTPIRAFTRTNP
                     KQIPDTARTTPHSIQWITDRDVDQAIRPTLENLFSIIERTIQEGRGILWQEGVELLVR
                     TNGFESVLKFVRGVVDICRTSEWTVIIVGAPGTMSDSEWARLRREAPALTIGDADIIE
                     SERIEDTIQEPEIGIHSDGPVKDVPPMLARLPSESMDYPSLLRRAEAWASFGFDVASL
                     IDAISIDLDLAREVYQRIEQDIRTATECLARIEEAEYISSPVRMKMRFRCMQLTSLED
                     IVSILDRIEKENLSAIK"
     gene            complement(4267..5652)
                     /locus_tag="HA345_06310"
     CDS             complement(4267..5652)
                     /locus_tag="HA345_06310"
                     /inference="COORDINATES: protein motif:HMM:NF006871.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid lyase"
                     /protein_id="HIH85005.1"
                     /translation="MEEIVASGLPAYGINTGFGDLVRVAIPDSDLKDLQSNLVRSHAC
                     GIGEEMPPSEVLGMMAIRANSLVTGHSGIRWSTIQSLVSMIRAGISPVVPRIGSLGAS
                     GDLAPLSHMALGLMGEGMVNVRNNGIWQKETAENALRTAGIEPVVLEAKEGLSLINGT
                     SQMCLWISLAEQRMSGLMAAAEVALALSIEGAHASMTPFHERLHQARPHPGQLKVASQ
                     MRYLLSDSPNMASHEGCEKVQDAYSFRCSPQVLGAIQESLDRVRSTISIELNSTTDNP
                     LIFTDSGDTEVISGGNFHGEVLGMAADALHLAVHETSSISERRIAKLLDPATTGLTAF
                     LAADPGLNSGLMILQYAAAASVAEIRARIGPATATNIVVSAQQEDHVSMGATASWMLL
                     QSIDNCAAVLAAEMITASEAMSHRSEDVGPNLISHLQMIRDVVPLNPGDSRRDEGIAA
                     LVPIILEGRFI"
     gene            complement(5769..>7401)
                     /locus_tag="HA345_06315"
     CDS             complement(5769..>7401)
                     /locus_tag="HA345_06315"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018696073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HIH85006.1"
                     /translation="AVFQNWAQYRITMKHLCEMTDHQTLVMYSGHPLGLFPSSEAAPL
                     VVVTNGMVIPNHSSKEDYDRMNALGVSQYGQMTAGSYMYIGPQGIVHGTTITLLNAAR
                     LYLDLPVGENLSGIRFVTSGLGGMSGAQAKAAVIAGASCIVAESNPVAAEKRHQQGWV
                     DLLFHDVDLAIDAMVESSDSGEPISIGYVGNIVTLWERLVEREVDVHLGSDQTSLHNP
                     FQGGYFPAGLDFDDATTMMSSNPEGFAELVRISLVRHVDAVNTMVERGMHFWDYGNAF
                     LLEAERAGASITDEQGEPIYPSYVEDIMGPLCFDLGFGPFRWVVTSANPADLQESDRI
                     AANVLRSMMDSAAPSIKQQIADNLRWIEHAQENALVVGSQARILYADDVGRRSIALAF
                     NQAIADGRISSPIVLGRDHHDVSGTDSPYRETANIRDGSRFTADMAVQNFVGDAFRGA
                     TWVSLHNGGGVGWGEVMNGGFGMVIDGSKSSRERIESMLHWDVNNGIARRAWARNRPA
                     EEAIERAMANEPRLKVNLPNHVSDELMDDLLGGES"
BASE COUNT         1951 a         1989 c         1624 g         1837 t
ORIGIN      
        1 ttatgacgtc gccttgacat ggcgaagatc ccaggttcaa ttcctggcaa gcccaccaaa
       61 tcacgcgaag cgatagctta cacgcaactt acctgcacct ttggacttcg atgcatcgaa
      121 agcaacctca gggatttccc ctgtgaatcc aacatgagta cctgcacatg gacagacatc
      181 gatatcttct atctcgatgg ttcgtaatga tgcaacgttt ggaattctat caagactaat
      241 cctcacattg gggtcattcc gaagattatc gagagaacga tggtccatac gtacagcgtg
      301 attcgatcta atctcatcgt tgatacgttc gattaaatcc aaaggatcga acgcatctcg
      361 attctcaaac ttgagatcga ttctggttgt ctcaatacct atctggttac ctacagtttc
      421 tgcaccccac acctcatgag ccaatgcact ggcgagatgt tgggcggtat gcatctgtgc
      481 cagacgaata cgacgaggag catctattga acaatcaacg atggtgccaa cgactggaag
      541 ttccccctca acgtgatgaa gaacctcgtt ccgacctttt acatcgatta cttgacaacg
      601 cccttcattc caactcattg aaccagtatc atgaggttgt ccaccacccg tgggatagaa
      661 ttcggttgat gccaatcgaa tccaatcctc attgatatca gtaacagtac tagtgaacgg
      721 agatggctga ccacttggat ggataagtaa gcgtgcttct gtatccatat ttactcctct
      781 tcaaacctga aatcagtgga acctccatcc cacggtcgag agacatcctc gatatcttca
      841 tcaccatcaa tatcgatggc agccgaagga tcgagtgaat acaacgaagg gtcaacctct
      901 gttgaagaac gagtccgtgc ctcacgacgt gcgtcttcga cagttgcttc ctgacgaatg
      961 tgaatgttag cgtggaatcg cccacattct gggcatcgaa ccgtaccaat tcggctcagt
     1021 gcgccacaat ccggacagga ttcaaaagat tcgtacgacg gagaagcatc actcattgct
     1081 cattcctcga ggaagatcat gtcgaactcg acctcgacct cgtcgccatc gtcgagtaac
     1141 acaactacga attcctcgtc gtcttcttcg atgaattcga gaatctcacc aaacgcttct
     1201 tcgccgtcct caagttccac accgactcta tctccgacgt caattccatc accgccatct
     1261 tccacagcct catcggattc atccgattcc tcatcttctg catcatccac ttcagcgtct
     1321 tctgcatcat ctgtgtcttc atctggagct tcttctgatt cctcttcatc agtatcatct
     1381 gtatctgtag atccatcttc ggtggaatcc tcatcgtctt ctgaatcctc ggaatcgccc
     1441 tttcgttctg cgcgaactat ctctctccaa cccttcgtct ggagttgaag atacacgctt
     1501 ccaatgagta gaccgatgcc caagaccata ccgactatac catcccagta gaatttcttg
     1561 ggcattgaac tagaaccatt ctctccagca agtggcgtga gtgagttcgc acaattagtg
     1621 agctgaatcg ccttatcgca aggatatatt tcgccaggct cgacatagaa attattctca
     1681 actgagaatt caccgacttg tccatcaaat gcaacatttc ctccagagcc atcaactggc
     1741 cctacaagtg cattgataag aaggccagca atgagcagag ccaatagcac atacatgatt
     1801 gggaagacat tctcatattg tttcatgaag aacttctgcc aacctgcggg ctcaaaacgc
     1861 ttgggcttaa gatcggaaat aggcacattc cattcgttga agtttgaacg aagttcattc
     1921 aaatcgatct tgccgttgtc atccgtgtct aggaatttga cgatacgatc tatctcgtgt
     1981 gggggaaggt ccgctaaatc aagggtcttg agaccctctg caaactcgta gtgatccaat
     2041 tcaccactct catcaacatc aaatccttcg aatagagcgt cgatggttgt gtttgactcg
     2101 ttcagattac gaccgatttc cagcatgatg ccatcggcgc tctcctgatc catcggagct
     2161 aattcttcct cttcggactc atcgtcagta tcttcgtcat cactgccatc atcatcatca
     2221 tcatcatcat catcgatgga atcaatgaga tcatccatgt catcggacga ttcttcttcg
     2281 tcatcatcgt cgacgtcctc atcgtcatcg tcgataagcg aactaggatc gaaagaacgg
     2341 ccctttccag aaaattccgg ttcttcatca tcgtcggaat cgtcgtcaga atcagcatca
     2401 tcttctgatt catcgtcttc ggcttcaact gcctcctcat tcgtagattc ggaaatcatt
     2461 gtagcaaagg ctgagtccat ctcttcatcc gcatcggaat cctcagtttc ctctgattct
     2521 gtggcttcct cagtttcctc ctcttcggac ttttcagaat ctgcctcgac atcttcagcc
     2581 tcatctggag attcgtcctc cacctcatct tcttcgacat cttcaggctc atccaccatc
     2641 tctggctcag gcttgtcaac aaaagcttca gctgcctttt tgagttcctt ctgatcgaga
     2701 tatcgattct cattttcatc aaaggcacgc gcgaactgga tgaaagcatc tgcatcagat
     2761 atatcgtgct tcttcattac gcgatttaga acggattccg catactgcat ggaaccactg
     2821 gaaaggatga attgtagttc accaagctca atttcaccat tgttatcttg atctatttct
     2881 gcaacaaggc ggtcaacttc gactggtggt aacgctgcga ttttgagagc aatcaacccg
     2941 gtgcgcaatt cctcagtgtc gatgtgacca ttcccatcag tatccaaacg tccgaacagg
     3001 gtctcaacat caaggcctgt agaagtcatc caatctgcaa gaactgcaac cacatcatca
     3061 tgcacgaaaa gtacgccgca ctgggggcag gtcttcgaat cgagtggaac aagggcagaa
     3121 catgcaccac actcgcctaa gttgtcctcg acgacaccag agaaagagac gccacagttt
     3181 ggacaactct cggaatccgc gggaacttcg gtctggcaag cgccacaggt ggccatatct
     3241 ttctcatcat cagccaactt atcttcccct cgaccttacg gccgcatgct taggagtcct
     3301 attctcgcta taacggttca cgcttgaatc ggttcgatta agcggctcgg aaccattcca
     3361 ttgatgaacc cagtgaacag gaaactgaaa ccatgagtga cggggttctg gaacctggaa
     3421 cggtccgact cgcaccctcc attgacccgg tgacctcttt gatagcgctt caccgaacac
     3481 atggaaagct gacgcctata cgtgcattca cgcgtacgaa tccaaaacaa attccagata
     3541 ctgcaagaac aacgcctcat tccatacagt ggattacgga tcgcgatgta gaccaagcta
     3601 ttcgtccaac tttagagaac ctcttctcaa ttatcgaacg aaccatccaa gaaggtagag
     3661 gcatcctttg gcaggaaggt gttgaactcc ttgtgagaac gaatggattc gaatctgtcc
     3721 tgaagtttgt tcgtggagtg gtagacatct gtcgaacgag cgaatggacc gttatcatcg
     3781 tcggcgcccc tggcacaatg agcgattcag aatgggcgag attgcgtagg gaagcgccag
     3841 ctctaacaat tggcgatgcg gatataatcg aatcagaacg aattgaagat acgatacagg
     3901 aacccgagat tggaatccat tccgatggcc ctgtgaagga tgtgccgcca atgctggcac
     3961 gcctacctag cgaatcaatg gactatccat ccctattacg acgagctgaa gcatgggctt
     4021 cattcggttt tgatgtggct tcactaatcg atgcgatttc tattgatctc gaccttgcta
     4081 gagaagtata ccaaagaatt gaacaagaca tccgtacagc aaccgaatgt cttgcacgaa
     4141 tcgaagaggc agaatacatt tcaagcccag ttcgcatgaa gatgcgcttc agatgtatgc
     4201 agttgactag cctagaggac atcgtttcga ttctcgaccg catcgagaaa gagaacctca
     4261 gcgctatcaa atgaaacgtc cttcaaggat gattggtaca agggctgcga taccttcgtc
     4321 acgtcttgaa tcgcctggat tcagaggaac aacatcacga atcatctgaa gatgcgatat
     4381 tagattgggg cctacatctt cacttctgtg gctcatcgcc tcagatgcag taatcatctc
     4441 ggctgcgagc actgccgcac agttatcgat tgattgcaga agcatccaag atgcggtcgc
     4501 acccatactc acgtgatctt cctgctgtgc tgatacgacg atgttagtgg cagtcgctgg
     4561 accgattcgt gcacgaatct ccgccaccga tgctgccgca gcatactgta aaatcatcag
     4621 accgctattc aatccaggat ccgcagcgag aaatgcggtc aatcctgtgg tggcaggatc
     4681 cagcaactta gcgatacgac gctcggaaat tgatgatgtc tcatggactg ctagatgaag
     4741 ggcgtcagcg gccattccga gtacctctcc atggaaattc cctcccgaga ttacctctgt
     4801 atcacctgaa tctgtgaata taagtggatt atctgtggtg ctgttcaatt caatcgagat
     4861 agtagaacga acacgatcga gtgactcttg gatcgcccct agtacctggg gagagcatcg
     4921 gaaggaatag gcgtcctgaa ccttttcaca accttcgtga gatgccatgt taggactgtc
     4981 agataatagg taacgcatct gagaggcgac cttcagttgc cccggatgtg gacgggcctg
     5041 gtgtaatcgc tcatggaatg gagtcattga agcgtgggca ccctcgattg agagtgcaag
     5101 ggcaacctca gcagcagcca tcaaaccact catacgttgt tctgcgagag aaatccacaa
     5161 gcacatttgt gaggtcccat tgatgagcga aagaccttct tttgcttcaa gaacgacagg
     5221 ttcgatacct gctgtgcgaa gagcattttc ggctgtttcc ttctgccaga ttccattgtt
     5281 tcgaacattt accatgcctt cacccatcag gcccaatgcc atgtgagaaa gaggagcaag
     5341 atcaccagat gccccaagcg acccgatacg agggacaaca ggggaaatgc ctgcacgaat
     5401 catggataca aggctctgta tcgtagacca tcgaattccg ctatgtccag taacgagaga
     5461 attcgcacgg attgccatca ttccgagaac ctcgctaggt ggcatttcct ctccgattcc
     5521 acacgcatga ctgcgaacta aattactctg caagtccttc aaatcagagt cagggatggc
     5581 gacacgaacc aggtctccaa aaccagtatt gattccatat gcaggcagcc cggatgcaac
     5641 aatctcctcc actgctcgcc gagaacttta cactgcttcg cggcaggtat catcgaggtg
     5701 cacgtcataa tcaccgccca cgatggccgc cacatccgac ggagagagac tggagccatc
     5761 gagacgaatc atgattcgcc acctaacagg tcatccatga gttcatcgct cacatggttc
     5821 ggaagattga ccttgagacg aggttcgttg gccatggctc gttcgattgc ctcctcagca
     5881 ggtcggttcc ttgcccatgc ccgacgtgca ataccattgt tgacatccca atggagcatt
     5941 gattcgatgc gttcacgact cgatttcgag ccatctatta ccataccaaa tccgccattc
     6001 atcacttcac cccagccgac tccgcctccg ttatgaaggc tgacccaggt ggcaccacga
     6061 aatgcatctc caacgaaatt ctgtacagcc atatcggctg taaaacgaga gccatccctg
     6121 atgttagcag tttcacgata tggagaatca gtgccgctaa cgtcgtgatg gtctctacct
     6181 agaacaatag gagatgatat ccgaccatca gcaatcgctt gattaaacgc gagagcgata
     6241 gaacgccgcc ctacatcgtc tgcatagagg atacgcgctt gggagccaac aacgagagcg
     6301 ttttcctgtg catgttcaat ccagcgaaga ttatcggcaa tctgctgttt gatagatggg
     6361 gctgcggaat ccatcatcga acgtaaaaca ttagctgcaa tgcgatctga ttcctgaaga
     6421 tcggctggat tcgcggaagt gactacccac cgaaacggac cgaatcctag atcaaagcat
     6481 aacggaccca tgatatcctc cacataagag gggtaaatcg gctccccctg ctcatctgtt
     6541 atggatgccc ctgccctctc tgcttcgagt aggaaagcgt tgccgtaatc ccagaaatgc
     6601 atacctcgtt ctaccattgt attgactgca tccacatgtc tcaccaacga aatacgcaca
     6661 agttctgcaa aaccctctgg attggaagac atcatcgtcg tagcatcatc aaaatctagg
     6721 cctgcaggga aatagccacc ctggaaggga ttgtgaagag aggtttgatc tgaaccgaga
     6781 tggacatcaa cctcacgttc aacgagacgt tcccacaatg tgacaatatt gcccacatat
     6841 ccgatagata tcggttcacc agaatcactt gattcgacca ttgcatcgat agccaaatcc
     6901 acatcgtgga acaaaagatc aacccaacct tgctgatgtc ttttctctgc ggcaacagga
     6961 tttgattcag caacaatgca ggatgccccg gcaatcactg ccgcctttgc ctgagcccca
     7021 gacatcccac ctagcccact ggttacgaaa cggatgccag agagattctc gccaacggga
     7081 agatcgagat ataaccgagc cgcattcagg agggtaattg tcgtaccgtg gacaattcct
     7141 tgcggcccga tatacatgta agaaccggcg gtcatctgac catactggct cactccaaga
     7201 gcattcatgc gatcataatc ttccttagaa ctatgattag ggataaccat cccatttgtc
     7261 accacaacta gaggagccgc ctcactgcta gggaagaggc ctaagggatg tccagagtac
     7321 atcactaggg tttgatggtc agtcatctca cagagatgct tcatagtaat acgatactgt
     7381 gcccagttct gaaacacagc a
//
LOCUS       DUKB01000185            3219 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_587656, whole genome shotgun sequence.
ACCESSION   DUKB01000185 DUKB01000000
VERSION     DUKB01000185.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_587656"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..749)
                     /locus_tag="HA345_06320"
     CDS             complement(<1..749)
                     /locus_tag="HA345_06320"
                     /inference="COORDINATES: protein motif:HMM:NF014671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85007.1"
                     /translation="MQDRSQRAGFRFQEHSRHPVSDAVASEAPLNTSCDGPDGRLYGT
                     LMRTPGDDKHLILGLMTGEGDLLRDDPLPEIQCQDGQVHVIWSGIPSRRSLDSTAACG
                     MCGRDEVQIVPIEGCSSMPNVKVDNTVINSISIMQPEGDSLYSVTGSSHSATSYTLKG
                     EIVQTMEDVGRHNAMDKLVGIHRIDSNWPMDKHIVSLSGRVSFEMVEKAVRSNVPILM
                     SVGGATSAAIDLAAFHDLTLIVFAREGRFTV"
     gene            876..1229
                     /locus_tag="HA345_06325"
     CDS             876..1229
                     /locus_tag="HA345_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007690938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HIH85008.1"
                     /translation="MAVQVEVVEATLDATDSAKEAMIGAMGSDTDTHVLMVSVEAGGC
                     SGHMYDMQIIERPDDISAFQSFQFGDITLLIHNKDSTLLNGIRIDYRDTLLGGGFQIE
                     NPNADKSCGCGQSFS"
     gene            1235..2119
                     /locus_tag="HA345_06330"
     CDS             1235..2119
                     /locus_tag="HA345_06330"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013720.1,HMM:TIGR03317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85009.1"
                     /translation="MPSHYVRTGDISVLIGDDSRSLLHSVSTQHLEDLSEGETQTCCI
                     LDANGRIEDRLLVWNLGDQIALTHMMGRAASTRELLVRSRSWKQNVDVIPLDEGFSLL
                     FREIQGDHVVNRVEQQGSVHSTIVRSLDTLEIVYLGPSQDIEILSEDFIERCSNLRDP
                     IEEDLYRIKRGHLTSSGLDQHRPIPLEVALDSDISFTKGCYIGQEMIARMDARGALAR
                     TSVTIETDTAIPPGSQSLAGGGRIIVMSSVEGTDSWWSACLVHPDVAHVGSSLHTKQL
                     EGVSVELNIRNSWKPSSD"
     gene            2165..>3219
                     /locus_tag="HA345_06335"
     CDS             2165..>3219
                     /locus_tag="HA345_06335"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH85010.1"
                     /translation="MHGTRVRLSVLLVMLFISLPQSSIVGATMTPPLNESVIDSALIN
                     AIETNEDTTHPVIIQFSGALVQDIRAFLISHEVTFVVESDFLKGGLAQLDAEQIAHLS
                     NHPEIRFLELDRPLQTFYLDEPIMTPEPILMHETVHVTNSTAAWSRAIIQRDGSLKLT
                     DTGAFAEWDGDGTTAVDVDTGVDAEHPDFDYAGPWTGDKVIYSAKFDGVGWTETKNSD
                     TSSGHGTHVGGTIAGNGDASGGRRLGTAKGAQLVALGTGDGVSIFAAEQGLEWVYEHS
                     RPGNNLNNIRVVSNSWGTDGDYNPQGAIATITDALTFENGVAVIFAASNSGGSGAEDD
                     SDLRTNVYANTPSAISIA"
BASE COUNT          807 a          732 c          785 g          895 t
ORIGIN      
        1 atgacggtaa aacgtccttc gcgagcgaat acaatcagtg tgaggtcatg gaacgctgct
       61 aggtcgattg cagcgctagt cgctccacca acactcatca ggataggtac atttgaccga
      121 acagccttct cgaccatttc gaaagacaca cgcccagaga ggctgacaat gtgtttgtcc
      181 atgggccaat ttgaatcaat acgatgtatt cccacaagtt tgtccatagc attgtgacgt
      241 cctacatctt ccatggtttg aacaatttct cctttgagcg tgtatgaggt tgctgaatgg
      301 gacgaacctg tgacgctgta cagggaatcc ccttctggtt gcatgatgga gattgaattg
      361 atgacagtgt tatccacctt gacattaggc attgaactac atccttcgat gggaacgatt
      421 tgtacttcgt cacgcccaca cattccacat gctgcagtcg aatctagtga cctgcgtgat
      481 ggaataccgc tccagatgac atgtacttgt ccatcttgac attggatttc aggcagtgga
      541 tcgtcacgaa gcaaatcccc ctcaccagtc attaggccga gaatcagatg tttgtcatct
      601 ccaggagttc gcattaaggt accatagagg cgtccatccg ggccatcgca ggaagtattc
      661 agcggtgctt cactcgcaac agcgtcactg actggatgcc tagaatgctc ttggaatctg
      721 aaaccagcac gttgacttct gtcctgcacg agttgttctt gtctacaatg tccatcaatc
      781 cagcggatat gagtgtagga ttgtcgagat tgatatatag cgaccttctg accagttgta
      841 tgggtcttat cggtagtgat gggttctctc ttccaatggc tgttcaggtt gaggtagttg
      901 aagcaactct tgatgctaca gatagtgcga aagaagcgat gattggtgcg atgggttcgg
      961 ataccgatac tcatgtgtta atggtctcag tcgaggcagg cggttgttca ggccatatgt
     1021 atgacatgca aatcatcgaa cgtcccgatg atatttctgc gttccagagt ttccagttcg
     1081 gagacatcac attactcatt cacaacaagg atagcacact tctcaatggg atccgcatcg
     1141 attaccgcga cacccttctt ggtggaggtt tccaaatcga gaatccaaac gcggacaagt
     1201 cctgcggctg cggtcagtcg ttcagttgag tcctatgcct tcgcactatg ttcgtacagg
     1261 cgacatctct gttctcatcg gagatgattc tcgttctctc ctccattctg tgtctacgca
     1321 acatctagag gatctatcgg aaggtgaaac tcagacctgt tgtatccttg acgccaatgg
     1381 tcgaattgaa gatcgtctcc ttgtatggaa tcttggtgac cagattgctc tcacccacat
     1441 gatgggtagg gcagcatcga caagggaact cttggtacgc tccagatcgt ggaaacaaaa
     1501 tgtggacgtc atacctcttg atgaggggtt ctcgcttttg tttagagaga ttcaaggaga
     1561 tcatgtggtc aatcgtgtcg aacagcaagg ttcagtccat tcgaccatag ttcgttctct
     1621 tgataccttg gaaatcgtct atcttggtcc atcacaggat atcgaaatcc tgagtgagga
     1681 tttcatagaa cggtgttcca atctaagaga tcccatcgag gaggatttgt acagaattaa
     1741 acgaggacat cttacttcat ccggattgga tcagcatcgt ccaattcctc ttgaagtagc
     1801 tcttgatagc gatatctcgt tcaccaaggg ttgctatatc ggtcaggaga tgattgcaag
     1861 aatggatgca agaggagcat tagcgcggac atctgtgacg attgagaccg atactgcaat
     1921 tcctcctgga agtcaatctt tggcaggtgg tgggagaata atcgtcatgt catcagtaga
     1981 aggaactgac tcttggtgga gtgcgtgtct cgtccatcct gatgttgccc atgttggttc
     2041 atccctccat actaagcaac ttgaaggcgt atctgttgaa ttgaatatac ggaatagttg
     2101 gaagccctct tcagattgat tacagacgcg taatacctta gaatgagggc gtttagccca
     2161 tgctatgcat gggacacgcg tcaggctgtc agtccttctt gtgatgctgt tcatcagcct
     2221 accacaatct agtattgttg gcgccacaat gactcctcca ttgaatgaat cagtcatcga
     2281 ttcagccctg attaatgcaa ttgagaccaa tgaagataca actcatccag tcatcattca
     2341 gttttccggg gctcttgttc aggatatccg tgccttcctt atctctcatg aagtcacctt
     2401 tgtcgttgaa tcggattttc taaaaggtgg tcttgctcaa ctcgatgccg aacagattgc
     2461 tcatctcagc aatcatccag aaattagatt cctcgaactt gatcgtccat tacagacttt
     2521 ctaccttgat gaaccaatta tgacacctga accaatcctg atgcatgaga ctgttcatgt
     2581 gacgaattct acagctgctt ggagtcgtgc aataattcag cgagatggat cattaaagct
     2641 cactgataca ggggcatttg cagagtggga cggtgatgga actacggctg tggatgttga
     2701 cacgggggtt gatgctgagc accccgattt cgattatgct ggcccatgga ctggagacaa
     2761 agtaatctat tctgctaaat tcgatggagt tggttggact gaaaccaaga actcagatac
     2821 atcatcaggt catggtacac atgtcggtgg aaccattgcc ggtaatggtg acgcctctgg
     2881 ggggcgtcgt cttggtaccg cgaagggggc tcaattagtc gcattaggca ctggagatgg
     2941 tgtttcgata ttcgctgccg agcaaggact tgaatgggta tacgaacata gtcgtccagg
     3001 aaataatctg aataatatcc gtgttgtttc aaactcttgg ggcactgacg gtgattacaa
     3061 ccctcaggga gcaattgcta ccattactga cgctttgacc tttgaaaatg gcgttgcagt
     3121 catctttgca gccagtaata gcggcggttc aggtgctgag gatgacagtg atcttcgcac
     3181 taatgtatac gcaaacacac cttcggcaat ttctattgc
//
LOCUS       DUKB01000186            6927 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_35817, whole genome shotgun sequence.
ACCESSION   DUKB01000186 DUKB01000000
VERSION     DUKB01000186.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6927)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6927)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6927
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_35817"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="HA345_06340"
     CDS             <1..274
                     /locus_tag="HA345_06340"
                     /inference="COORDINATES: protein motif:HMM:NF012383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HIH85011.1"
                     /translation="VAIVDDMISTGGTICRASDALRRQGAKEVHAACTHGLFTGGAIH
                     RLGNHVDGVHSTDSLPNPRANVSAAEALSRGVKRLIERMSSEIVVH"
     gene            367..747
                     /locus_tag="HA345_06345"
     CDS             367..747
                     /locus_tag="HA345_06345"
                     /inference="COORDINATES: protein motif:HMM:NF003212.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7ae"
                     /protein_id="HIH85012.1"
                     /translation="MTEHIAFETPQDVRDSVFELVKLVGKDGHGVVKKGANEVTKCAE
                     RQTAQMVIMAEDVNPPELLAHIPQICKEKGIPFIYVDSQEYLAEYAGMASGTKTAAIA
                     ILEVGRDATDRFQAIKEQATTLAA"
     gene            762..980
                     /locus_tag="HA345_06350"
     CDS             762..980
                     /locus_tag="HA345_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008082961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HIH85013.1"
                     /translation="MAVESWPAEVVEIVGRTGMRGEATQVKVRVNDAPNPRDVGRIIT
                     RNVLGPVRLGDVLMLRDTGREAKRLNAR"
     gene            992..1183
                     /locus_tag="HA345_06355"
     CDS             992..1183
                     /locus_tag="HA345_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009990483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HIH85014.1"
                     /translation="MPDTHTCSFSGEEIEPGTGMMFVKKDGSVLWFKDSKSRKNHLNT
                     KRNPRRIKWTRHYVKGGIK"
     gene            1215..1433
                     /locus_tag="HA345_06360"
     CDS             1215..1433
                     /locus_tag="HA345_06360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85015.1"
                     /translation="MDWSNLFSVAGILLIGLTIYDFFMAFTCGLGGSGVCDGDSPAYA
                     TYCISGALCICIALLFHKEKPVVLDEEE"
     gene            1479..1925
                     /gene="ndk"
                     /locus_tag="HA345_06365"
     CDS             1479..1925
                     /gene="ndk"
                     /locus_tag="HA345_06365"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006529547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HIH85016.1"
                     /translation="MQTTFVMVKPDGVQRGLVGEIIQRFERKGLRLVGLRGLIPSEKI
                     AETHYEVHKERPFYSGLISFITSGPVVAMAWAGVDAISVARTIIGPTNGRDAAPGTIR
                     GDHGMDIGYNLIHGSDGEDTAASELALWFPDGIMEWNRDIEQWIYE"
     gene            1940..3766
                     /gene="infB"
                     /locus_tag="HA345_06370"
     CDS             1940..3766
                     /gene="infB"
                     /locus_tag="HA345_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015282615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HIH85017.1"
                     /translation="MDGRRQPIVAVLGHVDHGKTSLLDHIRNLGSRSQGSVMAREAGG
                     ITQHIGATEVPADILNGICGPLLKGKEFLSPGLLFIDTPGHHSFTSLRTRGGALADIA
                     ILVIDIMDGCKPQTLESIRILRESKTPFIIAMNKVDRLYGWDSERGRSTAKSLREQSG
                     DVIGYLEEKHWKLVGQLGENGFNAERYDRITDFTNTIAMVPCSAKEGEGIQDLLAVVI
                     GLAERYLESQLTDVEGSGTATVLEVKEERGLGKTLDIILSKGSISKGDEIVVATENGP
                     KRTKVRGMFSPRGMTEMRDAGDRWDPVDSVHAAAGVKVSAVDLDDVLAGTTLHVVNTE
                     KEAEEAWMKAKEESTLSIDLKDKGVCIKADTLGGLEALAFELGERDISIRAASVGKIT
                     RRDVRIAEVGKEPEERVILAFSTNALPDAKKEIEKPSSDVCLIEDEIVYHIMEQHEEW
                     RENVLAEKEKEEREMVVHPGRLLFLPDHTFRASKPAVIGVRVLGGRTHIGQLLMKDGM
                     QIGQVKSIKKGQDNQKEAIQGDEVAIAIDGAVKRPGEEAMEATHVTVGRQIDEGDVLL
                     VSVPETHVRILRKRELSVVEKEILEEIIMMHRQNPDTPRWGL"
     gene            3836..4825
                     /locus_tag="HA345_06375"
     CDS             3836..4825
                     /locus_tag="HA345_06375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004069998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HIH85018.1"
                     /translation="MVSEYSGGGGRGREVVRVVSDISNALMNEVSKVIIGKQENLRRV
                     TIGILSNGNMLLEDFPGLGKTMLANTFARSLGCKFKRVQFTPDLLPSDIMGTYMYDQK
                     EGEFKLRPGPLFANLLLADEINRAPPKTQAALLEAMEEKQVTIEGITHKLPAPFVTLA
                     TQNPIEQEGTYPLPEAQMDRFLMKMSMGYPNRQEEKAILARRKMRGKDGHDVDQITSP
                     KKVVAMQKALEEVHIDPAILSYIVEVVQRSREDHRVITGASPRASQSLFKTGRAAAAI
                     DGRDYVIPDDIKGVALQVVSHRIVLKPEAKIRGITGMHIMRKILNEVPVPVIQ"
     gene            4889..5875
                     /locus_tag="HA345_06380"
     CDS             4889..5875
                     /locus_tag="HA345_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013006886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HIH85019.1"
                     /translation="MDPYKTIISCTNQKGGCAKTTTAVNLATSLAEGNPSMGIPPAKV
                     LLIDLDPQGNASTSFGVDKRLDVPTVYDLLMQPSDGTLNVHDYLIGPDILTDEMQRAF
                     KNMNQDSRIPPRLKVENLYLLPSNIRLSGAEIELATKLGRETRLREALAPVMDDFDHI
                     IIDTPPSLGLLTINALAASNWILVPVQAEYYALEGMSQLMNSIRLIQKRVNNHLKLFG
                     IAVTMYTPQSKLSAFVEGEVRKHFGEDVFQTVIPRLMSIAEAPKDGAPVVLLKKPTKR
                     NKGSKQYWGLAKEAHQRILARRAEYGVNPESVLRREAIEKGDPEHIWDDIED"
     gene            5902..6183
                     /locus_tag="HA345_06385"
     CDS             5902..6183
                     /locus_tag="HA345_06385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85020.1"
                     /translation="MPTTTVMAMFGAVTVTMMGSPEMTSVSVSFEIRRRLNSLKAMEG
                     VRSVDDLLKAVLKEHRLNRLRSEQDSIRLRIRDLEKSDIEAVIARITEE"
     gene            6186..6437
                     /locus_tag="HA345_06390"
     CDS             6186..6437
                     /locus_tag="HA345_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85021.1"
                     /translation="MKGQPRVVYVNGSTVLRGLVIEGSDEETLLHLAACNQVELISKR
                     REWNTVLLGLTEMVRLTGAEPFGGENLQQLRQSLPVDFR"
     gene            complement(6438..>6927)
                     /locus_tag="HA345_06395"
     CDS             complement(6438..>6927)
                     /locus_tag="HA345_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85022.1"
                     /translation="VTNKSSKEDEYVQKGATKEIETGSIEQVGGIIEDDAWGDDVAAL
                     LDMSDSSSKEEVDDATSKGKSRSVTEPVEDDSSESSDEDVDVDDGSGEWQDGEQGWQV
                     YDGTPSDSEDETAESPAAPVTEEIAPTEAPPLPEGGLPPGWTTDQWKWYGHEWLEKNG
                     GQ"
BASE COUNT         1862 a         1640 c         1766 g         1659 t
ORIGIN      
        1 tgttgcaatc gttgatgaca tgattagtac aggggggaca atctgtcgcg catcagacgc
       61 actccgacgc caaggagcaa aagaagtcca tgccgcctgt acccacggtt tgttcactgg
      121 tggcgcaatc caccgacttg ggaaccatgt agatggcgtt cattccacgg actcactacc
      181 aaatccaagg gcaaacgttt ctgcagcaga ggctctatcc agaggagtca agcgattgat
      241 tgagcgtatg tcctctgaga ttgttgtcca ttaaagcttg aattagaaaa ctgagtgacc
      301 catggggggt ccaatgcgtt tatatcgaat ccttccaccg cagcggatgc acaagaggta
      361 tctccaatga ctgagcacat cgcatttgaa acaccacaag acgttagaga cagtgtcttc
      421 gagctagtca agctcgttgg caaggatgga catggcgtcg tcaagaaagg agcaaacgag
      481 gttaccaagt gtgctgaacg ccagactgct cagatggtaa tcatggccga ggatgttaat
      541 cctcctgaac tcctagcaca tatccctcaa atctgcaagg aaaagggcat cccattcatc
      601 tacgtcgaca gtcaagaata tcttgctgaa tatgcaggca tggcttcagg caccaaaacc
      661 gccgcaattg ccatccttga agtcggtcga gacgcaaccg atcgattcca ggctatcaaa
      721 gagcaagcca ccacactggc tgcatgaaag gagggaatgg aatggctgtg gaatcatggc
      781 ctgctgaggt cgtggagatt gttggccgaa ctgggatgcg tggcgaagct actcaagtca
      841 aagtccgtgt caacgatgca cctaaccctc gcgacgttgg tcgcattatc actcgaaacg
      901 tactcggacc cgtccgtctt ggtgatgtct tgatgctacg tgacactggc cgtgaggcta
      961 agaggctgaa tgcccgctaa ggtgagaaga tatgcctgat actcacacat gcagtttctc
     1021 tggagaggag attgaacctg gaactgggat gatgtttgtc aagaaagacg gatcagtcct
     1081 ctggttcaag gacagtaagt cccgtaagaa tcacctcaac acaaagcgta acccaagacg
     1141 cattaagtgg actcgccact acgtcaaggg cggcatcaag tgattgaaac cacgcactgg
     1201 ttaggtgttt ggtaatggat tggtctaatc tcttctctgt tgcagggatt cttcttattg
     1261 gtctgaccat ttatgatttt tttatggcat tcacgtgtgg gttaggtggt tcaggagttt
     1321 gtgatgggga cagccccgca tatgcaacat actgtatttc aggtgcactt tgcatttgta
     1381 tcgcgctatt atttcacaag gaaaaacccg tagttcttga tgaagaagaa taggtatcgg
     1441 ttgaaataca cccatccggt cggcgggtca tgtccgacat acagaccacc tttgtcatgg
     1501 tgaagcctga cggtgtccag agaggccttg taggcgagat tatccaaaga tttgagcgta
     1561 aaggccttcg attggtgggc ctacgtggat taattccctc tgaaaaaatt gctgagacgc
     1621 actatgaagt acacaaggag agacctttct attcaggtct aatctcattc attacttccg
     1681 gtcccgtagt ggccatggct tgggcgggtg tagatgccat cagtgtagca cgcacaatta
     1741 tcgggccaac caatggtaga gacgccgcac caggtacaat ccgtggcgat catggtatgg
     1801 acattggata caatctcatt cacggtagcg atggtgaaga caccgccgcg agtgagctag
     1861 cgctatggtt ccctgatgga ataatggaat ggaatcgcga cattgagcag tggatctacg
     1921 agtgagggga cgtgatggtg tggatggacg acgtcaaccg attgtcgctg tccttggcca
     1981 tgtagaccat ggcaagacat ccctgttgga tcacatccga aacctaggct cgcgttcaca
     2041 aggttctgtg atggctagag aagcaggggg cattacccag catatcggtg ctaccgaggt
     2101 tcccgcagat attctcaacg gaatttgcgg ccccttgcta aaaggaaagg agtttctttc
     2161 tcccggacta ctcttcatag acacgccagg gcaccattct ttcacctcat taagaacccg
     2221 tggtggagca ttggccgaca ttgcaatcct cgtcatagac atcatggatg gatgcaaacc
     2281 tcagacgctc gaatcaatcc gtattcttcg agaatcaaag acacctttca tcatcgcgat
     2341 gaacaaggtc gaccgtctat atggatggga ttctgagcgc gggcgatcta ctgcaaaatc
     2401 tctacgagag caatccggtg atgtcatagg ttatcttgaa gaaaagcatt ggaaacttgt
     2461 tggtcaacta ggtgagaatg gtttcaatgc cgaacgctac gatcgcatta ctgatttcac
     2521 caacactatc gcaatggtgc cctgctctgc taaggaaggc gaaggcatcc aggatctgct
     2581 tgctgttgtc attgggcttg cagaaagata ccttgaatct cagttgactg atgtggaagg
     2641 aagtggtact gcaacggtct tagaggtaaa ggaagaacga ggcctaggaa aaacactcga
     2701 cattatcctc tctaagggtt cgattagcaa gggtgatgag attgttgtag ctacagaaaa
     2761 cggtccgaag cgaacgaagg ttcgaggtat gttttcacca aggggcatga ctgagatgag
     2821 agatgcaggg gaccggtggg atcccgtcga tagcgtccat gctgcagcag gagtcaaggt
     2881 cagcgcggtt gaccttgatg atgttcttgc aggtacaacc ctccatgtcg tgaatactga
     2941 gaaggaggct gaagaggctt ggatgaaagc aaaggaagaa tcaactctca gtattgatct
     3001 gaaagacaag ggcgtctgta tcaaagcaga tactcttgga ggccttgaag cacttgcatt
     3061 tgagctagga gagcgtgata tttccatccg tgcagcaagt gtgggtaaga ttacacgacg
     3121 tgacgtacga attgctgaag ttggcaaaga acctgaggaa cgcgtaattc tagccttcag
     3181 taccaatgca cttcccgatg cgaaaaaaga aatcgaaaaa ccaagttcgg atgtttgcct
     3241 cattgaggat gaaatcgtct atcatatcat ggaacaacat gaggaatggc gagagaatgt
     3301 tcttgctgaa aaagagaagg aagaacgcga gatggtcgtc caccctgggc ggcttctctt
     3361 tcttccagat cacaccttcc gcgcctctaa gccagcagtc attggtgtga gagttctggg
     3421 agggcggacc catatcggtc agcttttgat gaaggatggt atgcagattg gccaagtaaa
     3481 atcaatcaaa aaaggacaag ataatcagaa agaagcaatc caaggagatg aagtcgccat
     3541 tgccattgat ggtgcagtca agcgccccgg tgaagaagcg atggaggcaa ctcacgtcac
     3601 cgttgggagg caaatcgatg aaggtgatgt cctactcgtc tctgtcccag aaacacacgt
     3661 ccgaatcctt cgaaaacgtg aactcagtgt agtcgagaaa gagatccttg aggagattat
     3721 tatgatgcat cggcagaatc ctgatactcc aagatggggg ctttaaccca cgtacgggaa
     3781 cgacgaacct tgaagtagtt ctggatgggg tttagtgtct gctgaaggtg ctagaatggt
     3841 ctcagaatat tcaggaggag gaggccgcgg acgagaggtc gttcgtgttg tgagtgatat
     3901 ctcaaacgcc ctaatgaacg aggtgtctaa ggttatcatc ggtaaacaag agaaccttcg
     3961 acgtgtgact atcggtatct tgtctaacgg aaacatgctc cttgaggact tccctggcct
     4021 tggtaagaca atgctcgcga acacctttgc acgctcactt ggttgcaaat tcaagcgtgt
     4081 gcagttcacc cctgacctac ttccttcaga catcatgggg acctacatgt atgatcagaa
     4141 agagggcgaa ttcaagcttc gacctgggcc actatttgct aaccttctac ttgctgacga
     4201 gattaatcgt gcgcctccaa agacacaagc cgctctactc gaagcaatgg aagagaaaca
     4261 ggtgactatc gaaggaatca cacacaaact ccctgcacct ttcgtgactc tggctactca
     4321 aaacccgatt gaacaggaag gaacctaccc ccttcctgaa gcacagatgg atcgtttcct
     4381 gatgaaaatg agtatgggat atccaaaccg tcaggaggag aaggctatcc ttgcacgccg
     4441 aaaaatgcga gggaaggatg gccacgatgt cgatcagatt acctctccga agaaggtggt
     4501 cgccatgcag aaggcactcg aagaagtcca cattgaccct gcgattctct cctacatcgt
     4561 cgaagtagtc cagcgttctc gcgaagatca ccgtgtgatt actggcgcat cgcctcgtgc
     4621 aagtcaatct ctattcaaga ctggacgtgc agcagcagca atcgatggtc gtgattacgt
     4681 catacccgat gatatcaagg gcgttgccct ccaagtcgtc agccatcgaa ttgtcctcaa
     4741 gcctgaagca aagattcgtg ggattactgg aatgcacatc atgcggaaga ttctgaatga
     4801 agttcccgta cctgtcattc aatgattctg gggcttgctg actgccaata ctgatttagg
     4861 acggcgattg tgggattctt gaggacggat ggacccatac aagacaatca tctcctgcac
     4921 caaccagaaa ggtgggtgtg cgaagacgac tactgccgtc aatctagcaa cttcgcttgc
     4981 agaagggaat cctagcatgg gtattccacc tgctaaggtt ctactgattg atctcgatcc
     5041 acaaggaaat gcctccacta gtttcggtgt agacaaacga ctggacgtac ccactgtata
     5101 cgacctgtta atgcagcctt cagacggtac actcaatgtc cacgactatc taatcggacc
     5161 agatatcctt actgatgaaa tgcagcgcgc tttcaagaat atgaatcaag attcaaggat
     5221 cccccctcga ttgaaagtgg aaaacctcta ccttctgcca tcaaacatca gactttcagg
     5281 ggcggaaatt gagctcgcta cgaaactcgg tagagagacc cgacttcgag aggctcttgc
     5341 tcctgtaatg gatgatttcg accacatcat catcgacaca ccgccatctc ttggcctgct
     5401 taccatcaat gccttggccg cctcaaactg gattcttgtt cctgtccaag cagagtacta
     5461 tgccctcgag ggtatgagtc aactcatgaa ctcgattcga ctgatacaga agcgggtcaa
     5521 taatcatctg aaactgttcg gtatcgcagt cacgatgtat acacctcaat ccaaactctc
     5581 cgctttcgtc gaaggtgaag ttcgtaagca ctttggggaa gatgtgttcc aaaccgtaat
     5641 cccacgattg atgtctatcg ctgaagctcc gaaagatggt gcacctgtgg tccttctgaa
     5701 aaaaccgaca aaacgcaaca aaggtagcaa acaatactgg ggcctcgcca aggaggctca
     5761 tcagcgaatc cttgcaagaa gggcggagta cggggtgaat cctgaatccg ttctaaggcg
     5821 agaagctatc gaaaaaggag atccagaaca catctgggac gacatcgaag actgattcaa
     5881 cctccagaga acggcattac tgtgcctact acaaccgtca tggctatgtt tggagcggta
     5941 accgtgacga tgatgggctc ccctgagatg acctcagttt ccgtttcttt cgaaattcga
     6001 agacgattga actcgctaaa ggcgatggaa ggggttcgga gcgttgatga tctactcaag
     6061 gcggtattga aggaacatcg gctgaatcgg ctacgttcag aacaggactc tattcgatta
     6121 cgtattcggg atttagaaaa atcagacatt gaggcagtaa tcgcccgtat cacggaggaa
     6181 taatcgtgaa ggggcaaccg agggttgtat atgtcaatgg tagcaccgtc cttcgtggac
     6241 tagtaatcga aggaagtgat gaggagaccc tgctgcatct agcagcatgc aatcaggtcg
     6301 aactcatctc aaagaggcga gaatggaata cggttctcct tggtttgaca gaaatggttc
     6361 gtttaactgg agccgaacct tttggtggag aaaacctgca acaattgcga caatctcttc
     6421 cggttgattt cagataatca ctgcccgccg ttcttctcga gccactcgtg accataccac
     6481 ttccactggt ctgtggtcca ccctggaggt aaaccgccct ctggaagtgg aggtgcctcg
     6541 gtaggtgcta tctcttcggt gactggtgcc gctggagatt ctgctgtctc atcttctgaa
     6601 tcggagggcg taccatcgta gacctgccaa ccctgttcac cgtcctgcca ttcaccgctt
     6661 ccgtcatcca catcaacatc ctcatcagat gattcggatg aatcgtcttc aactggttct
     6721 gtaactgagc gagacttccc cttagaagtg gcatcatcga cttcttcctt cgatgaagaa
     6781 tcagacatgt caaggagtgc agcaacatca tcaccccatg cgtcatcctc gatgatacct
     6841 ccaacctgtt caattgaacc agtctcgatt tcttttgttg cacccttctg cacatattcg
     6901 tcctctttag atgatttatt cgtcaca
//
LOCUS       DUKB01000187            8817 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_25331, whole genome shotgun sequence.
ACCESSION   DUKB01000187 DUKB01000000
VERSION     DUKB01000187.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8817)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8817)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8817
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_25331"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..585
                     /locus_tag="HA345_06400"
     CDS             <1..585
                     /locus_tag="HA345_06400"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: protein motif:HMM:NF013916.1"
                     /note="catalyzes the reversible formation of fructose
                     1,6-bisphosphate from glycerone phosphate and
                     D-glyceraldehyde 3-phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HIH85023.1"
                     /translation="WDGFIAHLSASTVHGGPRSQFKVLVGSAHEALDRGAGAVSGQVN
                     LGDEHEPEMIADLGRLTGEAWSIELPVLGMVYPRGEHLRITSDDPTKGVAHAVRIAYE
                     LGCDVAKVPWTGSVDSFQMVTSAAPIPVLIAGGGAGTTMEDTLAMVRSSMEAGGAGVC
                     MGRRIFGSGRPKNVTQALRAIIDGSSMDEALSFL"
     gene            595..1527
                     /locus_tag="HA345_06405"
     CDS             595..1527
                     /locus_tag="HA345_06405"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: protein motif:HMM:NF014064.1"
                     /note="catalyzes the formation of 3-dehydroquinate from
                     3-deoxy-aribino-heptulonate 7-phosphate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HIH85024.1"
                     /translation="MELWAEKALVNVGSITPDRILSEDRAGIIEHTIADGTDRESIRE
                     YIGMVDWVLVRCTDWTMIPLENLISDMVGSGTRLCVEISVSEEVSGAIFALEIGVDGL
                     LLPDNSEIWSHADRVRKSRPSLTLKADEWRLEEFEVTHVEEGGIGERICIDLTERMEV
                     GEGLFTGSFSSCLLLIQAEVIENPHVPPRSFRVNAGAVHAYVLTPEGRTKYLEELRSG
                     DYVEIWGPEGPRRTAQIGRLKIERRPFLTIRGRTDQHEGQIMVQQAETVHFLDHNGKS
                     ISATDIQPGQILLAYCMGSARHIGKAVPSGVREV"
     gene            1530..2384
                     /locus_tag="HA345_06410"
     CDS             1530..2384
                     /locus_tag="HA345_06410"
                     /inference="COORDINATES: protein motif:HMM:NF012509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85025.1"
                     /translation="MAVLGRGTAYGSISLLHALGAGYGASLSLDLPAKVMLRDTPDRQ
                     EIIDPHGLLEAVMSTWVEVGLQVPDGELHWMVRSEIPSGVGLKSSSAVAAAAVLALAD
                     ATGTELETAQVVEVAVRAQFAAGCTVTGSVDDTWAALTLGWKVVNPSVPVAEGVALEG
                     MWPNPEDWAVFIVERGERTAEIDPQAFGMAQSNFQKALMAIQQGALDNAMTENGRGVA
                     SATRDAAGRKICNDLLVWGARCASISGSGPSIAFLIPTVNEAAIDRILETIEQRGLTV
                     FETAIRTE"
     gene            2395..3471
                     /gene="aroC"
                     /locus_tag="HA345_06415"
     CDS             2395..3471
                     /gene="aroC"
                     /locus_tag="HA345_06415"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: protein motif:HMM:TIGR00033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HIH85026.1"
                     /translation="MGMSLGRWPRLTLFGESHGAGVGVLIEGLPPGMEVDLDAMVADL
                     ERRRPGRRGLSQRTELDLPSVLSGVHDGKTTGWPLVLFSENGDVRSSDYSFLPDHPRP
                     GHADMVENIRTHGSADPRGGGSHSGRLTWGLVAAGSLVRPILEREGCRILAHAAAIED
                     LEAELPLDGESTPMTEEMIRLNCLDSAAAHNFVERINQLRRDKDSAGSRVDVLVTGLP
                     IGIGQPWFEGIEPSLAKGLSAIPAVRAVEFGHGVNASQMRGSAHNTAWHASDNGPQHG
                     TDGDGALGGISTGSPLRIRVHLKPPSSIPQAQDTLHLPSGEQRPLVVGGRHDPVLAPR
                     AAPVVEAVTAFLLTEALLSRTRPF"
     gene            3493..4845
                     /locus_tag="HA345_06420"
     CDS             3493..4845
                     /locus_tag="HA345_06420"
                     /inference="COORDINATES: protein motif:HMM:TIGR00657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HIH85027.1"
                     /translation="MGGTVEGLRTVLKFGGSCLKNSADISAIADRIRMFNPSPVVVVS
                     AFFGVTDRLLDAINDVRSHSFDQSSFLRWVRDHHCALAPEILTSDSLPRFEEALSNLD
                     VALASLLDGDGAEVSVLVSGERLSSVCLEAALSSRGIKVRAMWAEDVPIRVKGRAPFV
                     RMDLSQTSECARIPSNEIPLIAGWYGIDQSDNLATMSRGGSDCTATYLAAIIGAASVV
                     IWRDVPGVLSLDPSWGMRGRRIPYLNYLEAVEIASYSSRLLHPDAIEPLVESGIPMII
                     RPLHQPEEPGTYVGPSISIGHPTVRVLVCHRRRFDLLWRLRSGGGLSSSLTGLGRLLH
                     KQRIRIWSIRADPAGIRVLLDETDLARVESSILGFDSEAEIQIGSPLALLSVFGEGIS
                     ADHHVRETLLDSLLGLGIDAWELESQEEGHAIHLLFNDEDAPTAVGRLTECFELLDAD
                     "
     gene            complement(4851..5774)
                     /locus_tag="HA345_06425"
     CDS             complement(4851..5774)
                     /locus_tag="HA345_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85028.1"
                     /translation="MTASNDTAHLYDGKTVRSGAPSRKKAAGRVTSSTEIPKEAIPEV
                     HIPSFVESLFGGPLVPKMKFLPAAKNVQNLQFASGGAMVVLAVLTYIVTPQAGTPWFA
                     LGNVLGVPAIGTAFHVLIILGSIGTGFWGVFQRDSRFLLTSYVLFILISLRFAASAVT
                     FGTDLSLLPESEGGQKSLLVLYAVFLVMYIELSNGVIRFSMLDTSIRTGEVYVMNEKK
                     VLSRYQASLILTPLIAGTVAFMTLFVNVIIPLFIGILDKTSAARMEESLELTSVYGVA
                     LGTMIVFLIVAGMFAVNLPLRIQQFRENTDD"
     gene            complement(5784..7076)
                     /locus_tag="HA345_06430"
     CDS             complement(5784..7076)
                     /locus_tag="HA345_06430"
                     /inference="COORDINATES: protein motif:HMM:NF013998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HIH85029.1"
                     /translation="MFASLAAALYLLGLVLRNQQLVTVAVVFLSFLTYAAFRTSHADV
                     AATGRRMDDQEFDEGVQFRNLNAMRQLSQARVFEDSDIDITLRIQNLSNLSKILEVRD
                     SVPEVMRVKKGANYALMELGGRRETELKYTLECPLRGFYTIGPVAVRVQDTFGLFHRE
                     KEIHLYDDFLVFPKMEDVKDAFVKSRVPKIFTGAVNIRQPGEGSNFYNLREYVPGDAM
                     RKVNWKAMARAGKMMVNEFERDAVSDIILIIDSRSVAETGPVSRNSLVYSTRAAASLA
                     QYFLSRRDSVGLVIYGDEILSVDRDTGKKQLYILLTKLAGAMARGNTPLKVVTNRIIP
                     HINKGSPIIILSPLEDDPTVVDAVRDFRAREFDVTVLSPSSLEFEFDARRLDRTGYEV
                     LKTERDILISELRGLGANVMDWEPDMLLSTALAGARGF"
     gene            complement(7140..>7607)
                     /locus_tag="HA345_06435"
     CDS             complement(7140..>7607)
                     /locus_tag="HA345_06435"
                     /inference="COORDINATES: protein motif:HMM:NF036831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HIH85030.1"
                     /translation="PEAQLDRFMFKMSVGYPDRADEDEILARRIVRKKDAVDVDVITD
                     PARVVAMQQACEDVYVDPAVRMYMVEIVARTREDPRVLVGSSPRGSQALLKTSRAAAA
                     LRGRDFVTPDEIKAVAPIAISHRLILKPEHQIKGLETQEVVTDILRQVPVPTV"
     assembly_gap    7608..7914
                     /estimated_length=307
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<7915..>8104)
                     /locus_tag="HA345_06440"
     CDS             complement(<7915..>8104)
                     /locus_tag="HA345_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HIH85031.1"
                     /translation="LADEINRAPPKTQAALLEAMQEKQVTIGTVTHKLPSPFIVMATQ
                     NPVEQEGTYPLPEAQLDRF"
     assembly_gap    8105..8450
                     /estimated_length=346
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<8451..8645)
                     /locus_tag="HA345_06445"
     CDS             complement(<8451..8645)
                     /locus_tag="HA345_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015283209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium chelatase"
                     /protein_id="HIH85032.1"
                     /translation="MVNILSNGNLLFEDYPGLAKTLMTNTFADALGCDFKRVQFTPDL
                     LPADITGTNIYDAKKGEFTFK"
BASE COUNT         1820 a         1957 c         2283 g         2104 t
ORIGIN      
        1 tgggacggat tcatcgctca tctatccgca tctaccgtcc atggtggtcc gcgaagtcag
       61 ttcaaggtcc tcgttggatc cgctcatgaa gcgttagatc gaggggcagg cgctgtctcg
      121 ggtcaggtga atcttggcga tgaacatgaa cctgagatga tcgccgatct agggagatta
      181 acgggggaag cctggtcaat tgagttgcca gtactcggta tggtataccc tcggggggag
      241 catctgagaa tcacctcaga tgatcctacc aaaggtgtcg cgcatgccgt tcgcattgca
      301 tacgaactgg ggtgtgatgt tgccaaggta ccatggactg gaagtgtaga ttcctttcag
      361 atggtaactt ctgcagcacc catccctgtc ctcattgcag gtggtggcgc tggtacaacg
      421 atggaggata cacttgccat ggtgcgttcc tcgatggaag ccggaggggc tggtgtctgt
      481 atgggccgtc gtattttcgg ttccggacgt cctaagaatg tcactcaagc gctacgtgcc
      541 attattgatg ggtcaagtat ggatgaggca ctatcattcc tgtgagggtt ttgaatggag
      601 ttgtgggccg agaaagcatt ggtcaatgtt ggcagtatta ctcctgaccg tattttgtcc
      661 gaggatagag ccggtatcat cgagcacact atcgccgacg gaacggatcg agaatctatt
      721 cgtgaataca tcggcatggt cgactgggta cttgttcggt gcaccgattg gacgatgatt
      781 ccattggaga atctaatttc tgatatggtg ggaagtggaa cgagattatg tgtggagatt
      841 agtgttagtg aagaggtatc tggcgctatt ttcgctttgg agattggagt tgacggactt
      901 ttgttgcctg ataattctga gatttggagt catgctgacc gtgtccggaa atcacgacca
      961 tctctcacac tgaaggcgga tgaatggaga ttagaggaat tcgaagtcac tcatgtcgaa
     1021 gagggaggga ttggtgagcg catttgtatc gatctaaccg agcgtatgga ggtcggagaa
     1081 ggcctgttta ctggctcatt ctcatcctgc cttctgttaa ttcaggcaga ggttatcgag
     1141 aatccccatg ttcctccccg gtcgttccgc gtcaatgcag gagcagttca cgcctatgtg
     1201 ctgactccgg agggccgtac caagtatctg gaggagttgc gttcaggtga ctatgttgag
     1261 atatggggtc cagagggccc tcgtcgaaca gctcaaatcg gccgattgaa aatcgagcgc
     1321 cgtccgtttc ttacaatccg gggtagaacg gaccaacacg aggggcaaat tatggtgcag
     1381 caagcggaaa cggtgcattt cttagatcat aacggcaagt ccatctctgc aacagacatc
     1441 cagcccggtc agattctgct tgcatactgt atgggaagcg ctagacatat tgggaaggcc
     1501 gttccctcag gggtaaggga ggtctgattt tggcagttct gggtcggggc acggcgtatg
     1561 gttccatctc tctacttcat gctcttggag caggttatgg ggcctccctc tcccttgatt
     1621 tacctgcgaa ggtgatgtta cgtgatactc ctgatcgtca ggagattatc gacccacatg
     1681 gactccttga agcggtcatg agcacttggg ttgaagttgg cctccaagtt cctgatggtg
     1741 agttacattg gatggtccgt tctgagattc cttcgggggt tggcctgaag tcaagctctg
     1801 cagttgctgc tgccgcagtc ctcgctcttg ctgatgctac tggtactgaa ctcgagacgg
     1861 cacaggttgt tgaggtcgca gttcgagctc agtttgccgc gggttgcaca gttactggtt
     1921 ccgtggacga tacttgggct gcgctaaccc ttggatggaa ggttgtgaat ccgtcagtcc
     1981 ccgtcgctga aggtgttgcc ctcgaaggta tgtggccaaa ccctgaagat tgggcggttt
     2041 tcattgttga acgcggcgaa cggactgcgg agattgatcc gcaggccttt ggtatggctc
     2101 aatcgaattt tcagaaggca ttgatggcta ttcaacaagg ggcacttgac aatgcgatga
     2161 ccgagaacgg tagaggtgtt gcgtctgcta cgcgcgatgc agccggccgt aagatctgca
     2221 acgatctcct tgtttggggc gcacggtgcg caagcatcag tggttcaggt cctagcatcg
     2281 ctttcctaat tcctacagtg aacgaggcgg ccatagatcg aattctcgag accattgaac
     2341 agcgtggttt gacagtattt gaaacggcaa tccgcacaga atgaggtgga ttacatgggg
     2401 atgagccttg gccgatggcc acgattgaca ttattcggag agagccacgg tgctggcgta
     2461 ggtgtcctca tcgaaggtct tcctccaggg atggaggttg accttgatgc aatggttgct
     2521 gacctagaac ggcggcgacc cggaaggcgc ggtctttcac agcgtactga attggatctc
     2581 ccctctgttc tcagtggagt ccatgatgga aagacgacag gttggccgct tgtcttgttt
     2641 tcagagaatg gagatgttcg tagcagcgat tactcattcc ttcctgatca tcctcgtcca
     2701 ggtcatgcag acatggttga gaatatccgt actcatggtt cagcagaccc acgtggaggg
     2761 ggaagccact caggtcgact cacatggggt ctagtcgctg ccgggtctct tgtccggcca
     2821 atccttgaac gtgaagggtg tcgtattctt gctcatgctg ctgcaatcga ggatcttgag
     2881 gcggaattac cactggatgg tgaatctaca ccaatgacgg aagagatgat tcggctgaac
     2941 tgcttagatt ctgcagctgc tcataacttc gttgagagaa tcaatcaatt gcgtcgagac
     3001 aaggatagcg caggtagcag agtcgatgtg ttagtcacgg gtttaccaat tggtataggt
     3061 caaccttggt tcgaaggtat cgaaccatct ctagcaaagg gcttgagcgc aattcctgcg
     3121 gtgcgtgctg tcgagtttgg acatggagtg aatgcatcac aaatgcgcgg gagtgcgcac
     3181 aacacggctt ggcatgcttc ggataatggc cctcaacacg gtacagatgg tgatggtgca
     3241 ctgggaggta tatccacagg ttcacctctt cgaatcaggg tccatctcaa gccaccgagc
     3301 agtataccgc aagctcagga caccctgcac ctcccgtctg gcgaacaacg cccactagtt
     3361 gttggaggcc gtcatgaccc tgttctcgcc ccccgtgcgg caccagttgt tgaggctgtg
     3421 acagccttcc tgctaactga ggctctattg agccgaacac gtccatttta ggcagaacgc
     3481 actgcggagg ttgtgggcgg tacagttgag ggtcttcgga ccgttctaaa gttcggaggt
     3541 tcctgcctca agaatagtgc cgacatttct gcaattgctg atcggattcg aatgttcaat
     3601 ccctctcccg tcgtagtagt ttccgctttc ttcggagtca cagatcgtct cttggatgct
     3661 atcaatgatg tccgatcaca ttctttcgat caaagcagtt tcttacgatg ggttcgagat
     3721 catcattgcg ctctagcacc agagattctc acctctgatt ctctcccacg gtttgaagag
     3781 gccctctcca accttgatgt tgctcttgca tctttgctgg atggagacgg tgcggaggtt
     3841 tctgttctcg tgtccgggga gcgactgtct tcagtttgtc ttgaagcggc cctttcatct
     3901 cgtggcatca aagtgcgagc catgtgggct gaggatgttc ctatcagggt caaggggcgt
     3961 gccccctttg ttcgtatgga tctctctcaa acctctgaat gtgcacgcat ccctagtaat
     4021 gagatacctc tcatcgctgg ttggtatggt attgatcagt ctgataatct cgccacgatg
     4081 tcacgcggtg ggtcggactg tactgcaacc tatctggccg ctatcatcgg cgccgcatct
     4141 gtcgtaatct ggagggacgt accaggagtt ctaagcctcg atccatcatg gggtatgcgt
     4201 ggccggagga tcccctatct gaactatcta gaggccgtgg aaattgcctc ttattcatcg
     4261 cgtcttttgc atcctgatgc gattgaacca ctagttgaat caggtattcc aatgattatt
     4321 cgccctcttc accaaccgga agagccaggc acctatgtgg gtccatcgat atcgattggt
     4381 catccaactg tgagagttct tgtctgtcat cgtcgtcgct ttgatcttct ttggagatta
     4441 cgatcaggag ggggtctctc atcgagcctt actggtttag gtcgattgct gcataagcag
     4501 agaattagaa tctggtcgat tcgtgcagat cctgcgggga tccgtgtact tctagatgaa
     4561 acggatcttg cccgtgtcga atcctcaatc cttggttttg attccgaggc tgagattcag
     4621 ataggttccc ctcttgctct tctcagtgtt tttggcgagg gtatctctgc cgatcatcac
     4681 gttcgagaaa cgctacttga ctcattgtta ggactcggca tcgacgcatg ggaattagaa
     4741 tcacaggaag agggtcatgc catacatctg ctgtttaacg atgaggatgc acctactgcc
     4801 gtgggacgtc tcacagaatg cttcgaactt ctggatgctg actgattcaa tcaatcatct
     4861 gtattttcgc ggaactgttg gattcttagt ggtagattca cagcgaacat tcccgcgacg
     4921 attaggaaga caatcattgt ccctagtgcg actccgtaga cactagtaag ctccagcgac
     4981 tcttccattc gtgcagcaga tgtcttgtcg agaatgccga tgaatagtgg aataatcacg
     5041 ttgacgaaca gggtcatgaa ggccaccgtg cccgcgatta gtggagtcag gattaacgag
     5101 gcttggtaac ggctcaggac cttcttctca ttcatgacat agacctcgcc ggtgcggatt
     5161 gaagtgtcga gcattgagaa acgaataact ccgttactga gttcgatgta catcacaagg
     5221 aataccgcgt agaggacaag gagggatttc tgacctccct cactctcagg gagtaaactt
     5281 agatcggtac cgaaggtgac agcactggcg gcgaaacgca gagaaattag gatgaacagc
     5341 acatacgagg tgaggaggaa tcgggagtct ctctggaaga ccccccagaa ccctgtcccg
     5401 atgctgccaa ggatgatgag gacgtggaag gccgtgccaa ttgcaggtac accgagcaca
     5461 tttccaagtg caaaccaagg ggtgcctgct tgcggtgtta cgatgtaggt taggacggcc
     5521 agaacgacca tagctccacc actagcaaat tgtagattct gaacattctt tgctgcaggt
     5581 aggaacttca tcttcggtac gagaggtccg ccgaagaggc tctcgacaaa ggaaggtatg
     5641 tggacttctg ggattgcctc tttgggaatt tcagtggagg atgttacacg gccggctgcc
     5701 ttcttccgcg aaggagcccc tgatcgaacg gtcttaccgt cgtataggtg cgcggtgtca
     5761 ttactcgctg tcatttcatc acctcagaat cccctggctc cagcgagagc ggttgacagg
     5821 agcatgtctg gctcccagtc cataacgttc gcaccaagtc cgcgaagttc actaatcaga
     5881 atatcacgct cggtcttcag tacctcgtat ccagttcggt ccaaacgtcg tgcgtcgaat
     5941 tcgaattcca ggctacttgg tgagaggact gttacatcga attcacgggc acggaagtca
     6001 cgtactgcgt caacgactgt ggggtcatcc tcaagagggc tgagaataat gattggacta
     6061 cccttgttga tgtgcgggat tatccgattg gttacgactt tgagtggagt atttccacgg
     6121 gccatagcac cggcgagctt agtgagaagg atgtatagct gcttttttcc tgtatctcga
     6181 tcaacgctca atatttcgtc gccatagatt acgaggccca cggagtcacg cctagatagg
     6241 aaatactgtg cgaggctagc tgctgctcgt gtgctgtaga caagggagtt acggctgacc
     6301 ggtccggtct cggccacaga tcgactgtcg atgatgagga taatatcgga tacagcgtca
     6361 cgttcaaact cattcaccat catcttgccc gctcgagcca tagccttcca gttgaccttc
     6421 ctcatagcgt ctccagggac gtattctcga aggttgtaga agtttgatcc ctcgcccggt
     6481 tggcggatat ttactgcacc agtgaaaatc ttggggaccc tgctcttgac gaatgcatcc
     6541 ttgacgtcct ccatcttagg gaaaacaagg aagtcatcgt agagatgaat ctctttctca
     6601 cggtggaata ggccgaaagt gtcctggaca cgaactgcaa ctgggccgat agtgtagaat
     6661 cctcgaagtg gacactcaag cgtgtacttc agttcagtct cacgacgtcc acctagttcc
     6721 attagggcat agtttgcacc tttcttgacg cgcatgactt cagggacact atcgcggacc
     6781 tcaagaatct ttgagagatt cgatagattt tggattctaa gtgtaatgtc gatgtcactg
     6841 tcttcaaaga cacgtgcctg ggaaagttgg cgcatagcgt tcagattcct gaactggact
     6901 ccctcgtcga attcttgatc gtccattcgc cgtccagtgg ctgctacatc tgcgtgagat
     6961 gtgcggaatg cagcatacgt taggaaggat aggaacacta ctgcgacagt cactaactgt
     7021 tgattcctaa ggacgagccc gaggaggtat agcgcagcgg ccagcgatgc gaacatcgcg
     7081 gactttctgc tccacgccaa gtcaacactc tcccggaatc cgaatcctct gattcactct
     7141 cagactgtgg gtactggaac ctgccggagg atgtcggtga caacttcctg agtttccagt
     7201 cccttgatct ggtgttcggg ctttaggatt agacgatgcg agatagcgat tggagctact
     7261 gccttgattt catcaggcgt cacgaagtcg cgaccacgga gagcggctgc agcacgggac
     7321 gtcttgagaa gagcctgtga tccacgagga gatgaaccga cgaggacacg cgggtcttca
     7381 cgggttcgag caacaatctc aaccatgtac atgcgtacgg caggatcgac gtagacatct
     7441 tcgcaagcct gctgcatagc aaccacgcga gcggggtcag tgatgacgtc gacatcgaca
     7501 gcatccttct ttcgcacaat tctgcgggca agaatttcgt cttcgtcggc gcggtctggg
     7561 taacctacac tcatcttgaa catgaaacgg tcaagttgtg cttcaggnnn nnnnnnnnnn
     7621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     7861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngaaacg
     7921 gtcaagttgt gcttcaggta gaggataggt cccctcttgt tcgacagggt tctgagtcgc
     7981 cataacgatg aacggtgatg ggagcttgtg tgtcacggtt ccgatggtca cctgcttctc
     8041 ctgcatggct tcaaggagtg cagcttgtgt cttcggtggt gcacggttga tctcgtcagc
     8101 aagannnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8161 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn cttgaaggtg
     8461 aattctccct tctttgcgtc gtagatgttt gttccagtga tatcagctgg aagtaggtca
     8521 ggggtaaact gaacacgctt gaaatcgcaa cctagtgcgt ctgcgaatgt gttcgtcatc
     8581 agcgtcttcg caagtcctgg atagtcctcg aagagaaggt ttccattcga taggatgttg
     8641 accatgacat tgtcaattac gtgagattta ccgataatca ctttctggac ttcagcggaa
     8701 atcgcctgag aaatctgacc gactgcctgg agacgttcgc gcacctcagg actactctgg
     8761 tggcgtggag ccggagcagg agctggtgct gctggagcgg gtgcaggagc aggagca
//
LOCUS       DUKB01000188            2998 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_47343, whole genome shotgun sequence.
ACCESSION   DUKB01000188 DUKB01000000
VERSION     DUKB01000188.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2998)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2998)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2998
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_47343"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="HA345_06450"
     CDS             <1..180
                     /locus_tag="HA345_06450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4396 domain-containing protein"
                     /protein_id="HIH85033.1"
                     /translation="MSFISMLMMEIAMEITDLIYTGGQLGLDPRAVIPMLVVGFLTPW
                     PYNYWRLKKYGVSCH"
     gene            complement(186..884)
                     /locus_tag="HA345_06455"
     CDS             complement(186..884)
                     /locus_tag="HA345_06455"
                     /inference="COORDINATES: protein motif:HMM:TIGR00291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HIH85034.1"
                     /translation="MVSLDDAILARFERNGLRFEILINPDLVDAHRNNPQSVELDDLL
                     ATDEVWLDARGGERPTVEQIEAAFGTNDLRVCVDRILLDGAIQLTTVQRKARIETLRI
                     SIIHSIASTAIDPRSKLPHPPSRIENALEECRYSVDPFLPLERQVNDAVQMMRPLIPL
                     KFAIARLAFKVPGAQYGAVQKILRGLMVKDEWLSNGDWACVVEIPAGGKVDLMAEVAK
                     RSPDSDVKVIDEGS"
     gene            complement(924..1643)
                     /gene="psmA"
                     /locus_tag="HA345_06460"
     CDS             complement(924..1643)
                     /gene="psmA"
                     /locus_tag="HA345_06460"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit alpha"
                     /protein_id="HIH85035.1"
                     /translation="MQPSGRGYDHGVSTFSPDGRLYQVEYARESVKRGTTTVGLKYRD
                     GVVLIVDKRITSKLINVDSIEKMYKIDEHIGFTTSGLVADARQLVDRARVTCQVNRMT
                     YSDAIPVTTLVKKMCDHMQSFTQYGGARPFGTALLIAGVDDEGIHLYETDPSGAYQSY
                     EAGAIGRGRSTVVDSFEASWKPNMTLNAAIKLGLESLRESLDEELNTEAVEIAAVTAD
                     GYAKLSSDDTVKHIGKLKPLE"
     gene            1737..2504
                     /locus_tag="HA345_06465"
     CDS             1737..2504
                     /locus_tag="HA345_06465"
                     /inference="COORDINATES: protein motif:HMM:NF014015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85036.1"
                     /translation="MDVAVLSSGGKDSSYAVWWAIMKGWNVRLIITLRVTSEDSMMYQ
                     LEGTAMAGLQAAAANIPWLPILQEEEDGTDSLEQALIPFVAGSSWPRSNTWSRQNQAA
                     AMWPEDWPWPNIKRATPNRPIQGIVSGALRSDYQRTRIDCMAERLGIHSFSPLWHMPA
                     ERHMRNLLEADFDVRFSAVAAEGLDEEWLGKKLNEETLEMLIHLNKTNGLNIDGEGGE
                     FETSVLAAPWFKPLTWTIENHWKRQSGRIRITHASIR"
     gene            complement(2497..2730)
                     /locus_tag="HA345_06470"
     CDS             complement(2497..2730)
                     /locus_tag="HA345_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85037.1"
                     /translation="MGEALPPKPGERIPRRSPPDFEELDESHSVMSGIMHGGLLNVAV
                     KDVNQYGPHAMIALLGIVSGITGLLLLLMWKLT"
     gene            2811..>2998
                     /locus_tag="HA345_06475"
     CDS             2811..>2998
                     /locus_tag="HA345_06475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85038.1"
                     /translation="MTDLPEHGRFLHIAAEPGAGSTTLSLQLVHSGLKANGRVLWVGR
                     DMPHPDRLSAVFGDLPVTA"
BASE COUNT          792 a          750 c          704 g          752 t
ORIGIN      
        1 atgtcattca tttcaatgct gatgatggaa atcgcgatgg aaatcactga tttaatctat
       61 actggaggac aacttggatt agacccaagg gctgtaatcc caatgctagt tgtcggtttc
      121 ttgacacctt ggccatacaa ctactggcga ttgaagaaat atggagtatc ttgccactga
      181 gatgctcaag aaccctcatc gataactttc acatcggaat ctggagaacg tttcgctact
      241 tcggccatca aatccacctt tcctccggct ggaatttcaa cgacacaagc ccaatcgcca
      301 ttgctaagcc attcatcctt aaccattaga ccccggagaa tcttctgaac agctccatat
      361 tgagcccctg gaaccttgaa tgcaaggcgt gctatagcga atttcaaggg aattaaagga
      421 cgcatcatct gaacagcatc gtttacttga cgttctagag gaagaaatgg atcaacactg
      481 tatcggcatt cctcaagggc attttcgatc cttgatggcg gatgaggtaa cttcgatcga
      541 gggtcaatgg cagttgatgc aatactatgg atgatggaaa tcctcaaggt ttcaattcgc
      601 gcctttctct gaacagttgt aagttggatt gcaccgtcca gcaaaatacg atcgacacag
      661 accctcaaat cattagtacc gaatgcggcc tcaatctgtt ctacagtcgg tcgttcccca
      721 cctcgtgcat ctaaccaaac ttcgtcagtt gccaacaagt catcgagttc gacactctga
      781 ggattatttc gatgggcatc aacaagatcc ggattaatta gaatctcaaa gcgaagtccg
      841 tttcgctcaa agcgagctag aatagcgtca tcaaggctga ccatcgtgta actctaaaca
      901 gagacagaag atggatgtga cggtcactca agtggcttta gtttgccaat gtgcttcaca
      961 gtatcatccg aagataactt ggcataccca tcagcagtta cggctgcaat ctcgactgct
     1021 tccgtgttga gttcctcatc aagagactca cgcagtgact ctagaccgag tttgatggcc
     1081 gcattgaggg tcatgtttgg cttccaactg gcctcaaagg aatcaacaac tgttgaacga
     1141 cctcgtccga tggcaccggc ttcataggac tggtatgcgc cagacgggtc tgtctcatac
     1201 agatggatac cttcgtcatc gacacctgca atcagaagag cagttccaaa cgggcgtgct
     1261 cctccatact gtgtgaagga ctgcatgtga tcgcacatct tcttgaccaa ggtggtaaca
     1321 ggaatagcat cagaataggt catacggttg acctgacagg tgactcgagc cctgtctacg
     1381 agttgtcgag catctgcgac aagaccagag gtggtgaatc caatatgttc gtcaatcttg
     1441 tacatctttt caatagaatc gacgttgatt agcttgctcg taatcctctt gtcaactatc
     1501 agaactactc catcacgata cttcagacca acggtagtag taccccgctt gactgactct
     1561 ctcgcatact ctacttggta aagtcgtcca tccggactga atgtgctcac tccatggtcg
     1621 tatcctcgtc cgctcggttg catcagttcg cctccaatct tgacctccgg tcgacctctt
     1681 atgaaccttc attcgaccca tggctatgag cgagccgacc ttaggatgta gaaaagatgg
     1741 atgttgcagt gctttcttcg ggaggaaagg attcctcata cgccgtctgg tgggccatta
     1801 tgaagggatg gaatgttcgt ctaattatca cgcttcgagt cacaagcgag gattcgatga
     1861 tgtaccagct ggaaggcaca gccatggctg gcctccaagc agcggccgcc aacattccct
     1921 ggctcccaat tctccaagaa gaggaagatg gtactgattc actggaacag gcactcattc
     1981 cattcgtagc aggttcatct tggcctcgat ccaatacttg gtcccgacag aatcaggctg
     2041 ctgctatgtg gcctgaagat tggccatggc cgaacatcaa acgagctact cctaatcgac
     2101 caatccaagg catcgtatct ggtgctctcc gctcagatta ccaacgtaca cggattgatt
     2161 gcatggcgga acgtcttgga atccattcat tcagtccact ctggcacatg cctgcagaaa
     2221 ggcacatgcg gaatcttctc gaggcagatt ttgatgtccg attctctgcc gtagctgctg
     2281 aagggttaga tgaggaatgg ctcggaaaga aactcaacga agaaaccttg gagatgctta
     2341 tccatttgaa caagacaaat gggttgaata tcgatggtga aggaggagaa ttcgaaacat
     2401 ctgttcttgc cgccccttgg ttcaaaccct tgacatggac gattgaaaac cattggaaac
     2461 gacaaagtgg ccgaattcgc attacacacg catcaatcag gtgagtttcc acattagaag
     2521 tagaagaaga ccagtaattc cggatacaat gcccagaagt gcaatcatgg catgaggtcc
     2581 gtactgatta acatccttga cagcaacgtt gagcagaccc ccatgcatga taccactcat
     2641 gacactatgg ctctcatcga gttcttcaaa gtcaggtgga gacctacgtg gaatccgttc
     2701 gcctggcttc ggcggcaatg cttcacccat gaagcctgtt ggatggctca agcgtatagg
     2761 gatgacggag tgccgaacgg ctcattgacc tgaagcacta gggatgtttg atgacggacc
     2821 tacctgagca cgggcgattc ctgcatatag cagcagaacc cggtgctggt tcaactacac
     2881 tgtcactcca gttagttcat agtggactga aagccaacgg cagagtactc tgggtaggca
     2941 gagacatgcc tcatcctgat cgcctttcag cagtattcgg agatttgcct gtaactgc
//
LOCUS       DUKB01000189            3606 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_77091, whole genome shotgun sequence.
ACCESSION   DUKB01000189 DUKB01000000
VERSION     DUKB01000189.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3606)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_77091"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="HA345_06480"
     CDS             complement(<1..840)
                     /locus_tag="HA345_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85039.1"
                     /translation="METPPDEEDRFLQERQFGIGSGIDLSDLLDDVADSFKEEPKLEK
                     ADEKPEEDAAIGEILDPFAEDDGIGPGRVMRDGSVPVAPERDLIEDIAIQGEIRLNWA
                     LMGAMITVYSAISILIGTVVENPLFALLGLMALAGFGFTLGERWVPRPAMRQLGIVWL
                     IIAMKILYGLAIELGSWELFGISPLSENYVGVLLLALVGVNVGVAYRYDEDAIAAQAV
                     LVLLAISSTAGSLLGEIGVAGMIFGASVLFQLLALHRRSGNLASLGIASSNLWIGMHA
                     LTNG"
     gene            971..2593
                     /gene="pckA"
                     /locus_tag="HA345_06485"
     CDS             971..2593
                     /gene="pckA"
                     /locus_tag="HA345_06485"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013704733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HIH85040.1"
                     /translation="MGTAGVVTEPRLQAIGIEPEGDVHWNLESTDLIQHALQREEGRL
                     TAHGVFLAETGERTGRSPHDRFIVDETPFTDAVWWGDVNRPIERDSYLELKAKVIEHL
                     SSSSQLHVQDLACGANPNLRLPLRLVTNSAWHASFARNMFLRLTPEEIQTRASEFTIL
                     HAPDFEAPKNTPGLNSPVFVIISFAEGIVLIGGTRYAGEIKKSIFSIMNHILPSKGHL
                     PMHCSANVGENGDTAVFFGLSGTGKTTLSADPLRPLIGDDEHGWSNEGVFNFEGGCYA
                     KMIRLSEDDEPAIFATTRMPGSILENVILDAEGIPDFNDGKLTENTRGSYPIDFIENR
                     ISKSMAGHAHNVVFLTCDAFGVLPPIARLNPTQAAYHFISGYTAKVAGTEMGVKEPKA
                     TFSACFGAPFMPMHPSVYGDLLTEKIDEHEATCWMLNTGWIAGGYGKSDRIRIRWTRA
                     LLNAALDGSLNDVEMMIDPRFGFEVPVECEGVPSEILDVRSTWKKPEEYDAAAENLVH
                     LFKDNFERYEEDATTSVMAAGPQSMVEQPDNS"
     gene            2617..3288
                     /locus_tag="HA345_06490"
     CDS             2617..3288
                     /locus_tag="HA345_06490"
                     /inference="COORDINATES: protein motif:HMM:NF012360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase"
                     /protein_id="HIH85041.1"
                     /translation="MRGADVSDLFPSLSNAEDAPNFPKGPVWEILNPSSNFSLKTQLD
                     EMVENKKVNFERYKKDGLAILIHNSAKVGKGVVIEGPTYIGPNVVIRPGAYIRPYSWI
                     CDGSVVGHCSEVKHSILLPNSKAPHFNYVGDSILGSGVNIGAGCKLSNLRNDGRNILI
                     RDGETGELLEDSGLRKFGAILGEGVQLGCNVVTNPGTIMGKESGAWPNVTVSGLIKSG
                     QTVKE"
     gene            3294..>3606
                     /locus_tag="HA345_06495"
     CDS             3294..>3606
                     /locus_tag="HA345_06495"
                     /inference="COORDINATES: protein motif:HMM:NF014877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85042.1"
                     /translation="MERPLLHGTDGIRGAVKAAPMSDLEALKAIVEKREVNGRAFMLL
                     GMAFAEVLKEDLGRQPKIVIGWDRRPGNAMLVSGLTDGLHQVGAEVIHGGLVATPGLH
                     NS"
BASE COUNT         1002 a          851 c          902 g          851 t
ORIGIN      
        1 gccattagtt aacgcatgca taccaatcca aagattcgag gaagcgattc cgagcgacgc
       61 gaggtttcca cttctccgat gaagtgcaag gagttgaaac agaactgatg cgccaaagat
      121 catgccagct acgccaattt ctcctaacaa cgagcccgca gtggaggaaa tcgcaagaag
      181 aactaggact gcttgggctg cgattgcatc ctcatcataa cgataagcaa cgccaacatt
      241 gactcctacc aatgccaaaa gaaggacacc tacgtaattc tcactaagag gggaaatccc
      301 aaacaattcc catgatccaa gttcaatcgc caaaccatag aggatcttca ttgcaataat
      361 gagccaaaca atcccgagtt gacgcatcgc tggacgagga acccaacgct ctccaagagt
      421 aaatccaaat ccagcaagag ccatcaaacc aagaagggca aagagggggt tttcgacgac
      481 ggtgccgatt agaattgaaa tcgcagaata aactgtaatc atcgcgccca ttaacgccca
      541 attgaggcga atctctccct gaatagcgat gtcctcaatc aaatcccgtt ctggagcaac
      601 cgggacacta ccgtcccgca tgactcgccc tggtccaatc ccgtcatcct ctgcaaaagg
      661 gtcgaggatt tctccaattg cagcatcttc ctcaggcttc tcatcagcct tttccagctt
      721 aggttcttct ttgaacgaat ctgcgacgtc gtccaagaga tctgagagat cgatgcctga
      781 accgatgccg aattgccgct cctgcaaaaa gcggtcctcc tcatcaggag gtgtttccat
      841 gctcagtcct accattcgac tgaattgaag gtatcatcga tggaaggtgg aaaagaccga
      901 actccccaac cattcggccc aatcattgaa ggatggactg tggaccggtg gggccatggt
      961 tctgcccctc atgggcacag cgggggttgt gactgagcca cggctacagg ctatcgggat
     1021 tgaacccgaa ggcgatgtac actggaatct cgaatccact gacctaatcc agcacgcact
     1081 ccaacgagag gaggggcgct tgaccgcaca cggcgtattt cttgctgaaa ccggtgaaag
     1141 aactgggcgg tcacctcacg accgattcat cgtcgatgag acgcctttta cagatgcagt
     1201 gtggtggggc gatgtcaacc gaccgattga acgagattcc tatcttgaac tgaaagcgaa
     1261 ggtcatcgag catctctctt cttccagcca gttacatgtg caagaccttg cctgtggagc
     1321 caatccaaat ctaagactcc ctctacgcct cgtcaccaac agtgcatggc atgcctcctt
     1381 cgcacgaaac atgttcctaa ggctgacacc tgaagaaatt caaacgcgtg cttctgaatt
     1441 caccattctg catgcaccgg attttgaagc accaaagaac acccctggat tgaactcgcc
     1501 ggttttcgtc atcatttcct tcgccgaggg gattgtgttg attggtggaa cacgctatgc
     1561 tggagaaatc aaaaaatcca tcttctcaat catgaatcac attcttccaa gtaaaggaca
     1621 cctgcctatg cactgttctg ccaatgttgg agagaacggt gacactgcag tattcttcgg
     1681 cctttcagga actggaaaga cgacgctttc agccgacccg ctccggcctc taatcgggga
     1741 tgatgaacac ggttggtcta atgagggcgt attcaacttc gaaggcggat gctatgcgaa
     1801 gatgattagg ttgagtgaag atgatgagcc tgcaattttt gctacaacac ggatgcctgg
     1861 atcaatcctt gaaaatgtaa ttctcgatgc agaaggaatc ccggatttta atgacggtaa
     1921 gttaacagaa aatacaagag gatcatatcc tatcgacttc atcgaaaatc gcatttctaa
     1981 gagcatggca ggtcatgctc ataacgtagt tttcctgacc tgtgatgcct tcggtgtgct
     2041 accaccaatc gcacgtctta atccgactca ggccgcttac cacttcatct ctggatatac
     2101 cgcaaaagta gcgggtactg agatgggtgt caaagagccg aaagcaacgt ttagtgcgtg
     2161 ctttggggcg ccattcatgc ccatgcatcc aagtgtctat ggtgatctct taacagagaa
     2221 aatcgacgaa catgaggcca cctgctggat gttaaacact ggatggattg cgggaggtta
     2281 cggtaagagt gaccggattc gaatccgatg gactcgagca ctactgaacg cagcactaga
     2341 tggctccctc aacgatgttg aaatgatgat tgatccacga ttcggatttg aagtccctgt
     2401 tgaatgtgaa ggggttcctt cagagattct cgatgtgcga agcacatgga aaaaaccgga
     2461 agaatatgat gctgcggcgg agaatctggt tcatctattc aaggataatt tcgaacgtta
     2521 cgaagaggat gccacaacga gtgtgatggc tgcaggaccg caatcaatgg tcgaacagcc
     2581 ggacaactca tgaataatca gcgatgttga tgtggcatga gaggggccga tgtatcggat
     2641 ttgttcccga gtctttccaa tgctgaggat gctccaaatt tcccaaaagg gccagtttgg
     2701 gaaattttga atccaagttc aaatttttca ctgaaaacac agcttgatga aatggtagaa
     2761 aataaaaaag taaattttga gagatataaa aaggacggat tagcaatcct aattcataat
     2821 tcagcaaagg taggaaaagg tgttgtcatt gaagggccaa catacatcgg gccaaatgtt
     2881 gtaattaggc ccggcgcgta tattcgccca tattcttgga tttgtgatgg ttctgtggta
     2941 ggacattgtt cggaagtgaa acattcaatc ttacttccta attccaaagc acctcacttc
     3001 aattatgtgg gagattctat tcttggttca ggagtcaata taggagcagg gtgcaaacta
     3061 tccaatctac ggaacgatgg acgtaacatc ctcattcgcg atggtgaaac tggggaatta
     3121 ctcgaagatt cagggttgag aaagtttgga gcgatcctcg gtgaaggagt tcaactcgga
     3181 tgtaatgtcg tgacgaaccc tggcacaatc atggggaagg aatctggtgc atggccgaac
     3241 gtaaccgtga gcggtctgat caaatccggt cagacggtca aggaatgaat ggcatggaac
     3301 gccctctgtt gcatggaaca gatggtatcc ggggggctgt caaagccgcc cctatgagtg
     3361 acctggaggc tctgaaggca attgtcgaga agcgggaagt aaatggtcga gcgttcatgc
     3421 ttctcgggat ggctttcgca gaagtactca aagaagacct cggccgtcaa ccgaaaattg
     3481 tgattggttg ggatagacga cccggtaatg caatgctagt ctctggattg actgatggtc
     3541 tccatcaagt gggggcagaa gtcatccatg gtgggctggt tgcgactcct ggtctacaca
     3601 attcag
//
LOCUS       DUKB01000190            4728 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_335698, whole genome shotgun sequence.
ACCESSION   DUKB01000190 DUKB01000000
VERSION     DUKB01000190.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4728)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4728)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4728
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_335698"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..924
                     /locus_tag="HA345_06500"
     CDS             <1..924
                     /locus_tag="HA345_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85043.1"
                     /translation="VQVVCTVASIDAFEALPTSAMRHSLTGSAIGRLSSPSAATLVAH
                     LRRRCVSRGAAVDERILVAIVEHANTWGGSAHALDIVLASIEVGSIPMDEKDVLILLD
                     GRPIDARSEIRPDWNPEAIGERLVQTVLDDVLPRGVDVEVTGEIEVKPLSDSWSPAEF
                     ELPSGRLIPSSQPEGERGPQKVAPVISARIDERFSDAESELHRRRFALHEIERELEII
                     QSRMVDSTPADIVGLTDRLLALEGQLDAISETPLGTDLGPISPFDPGVIEVEVKYPIL
                     HPVSGQVPHLEEARQNHGTAVLRKRKVKIPV"
     gene            complement(925..1383)
                     /locus_tag="HA345_06505"
     CDS             complement(925..1383)
                     /locus_tag="HA345_06505"
                     /inference="COORDINATES: protein motif:HMM:NF015639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HIH85044.1"
                     /translation="MARRHIQPWWKDGILFTCLPNCGRCCDEPHGLVYLSKEDAHRIA
                     RHHEMDTQEWLERDARQTHDGRWVLKSNGDGICIYIQDDKSCDIHAAKPAQCSAFPFW
                     YENVRDDPSWRKTIGICPGLVHPDAILINGETIQAHLNADAHAEQGFRNL"
     gene            1497..2663
                     /locus_tag="HA345_06510"
     CDS             1497..2663
                     /locus_tag="HA345_06510"
                     /inference="COORDINATES: protein motif:HMM:NF012506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HIH85045.1"
                     /translation="MSEDEKSLFEVLPSHLDTGLRGIPVGTCGTSFVDPVDGVHYVGY
                     PISDLADFDPEDIVHLLFNKSLPTAEESKAMKQNLASRSVIPVGALDLFESIGEGQGH
                     PMDWLSIGIMALGRAEADDDILEDGMNLIAWMPELMARPFMKRGGRGDIASPSNPSLG
                     MVGNFVSMLGMEGDDARRAERVLKSFLVLHMDHGGGNLSTFAGKAVASGRASLFSSIA
                     SAMNALSGPLHGRANQSCLEFVQKVGTSDLNEVEAFVRAELAAKRPIFGFGHAVLRAE
                     DPRATVQMSIGEEVCPDDPLFSTVRTLREVVPRVLGENERISNPNANVDLVSGTLLYN
                     AGFMKPSYYTTFFGWARVIGITAQIVDERNSRGGKGVPIYRPKYIAKDRTVRRI"
     gene            complement(2664..3797)
                     /locus_tag="HA345_06515"
     CDS             complement(2664..3797)
                     /locus_tag="HA345_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85046.1"
                     /translation="MSNEWTQPRQNSIEAIAHAMTVADGAEYDIRMSIDGELILHHNA
                     RIERSEKDEQYEGLRPYVEQNHSDDLRNAGFDLFSDMIEDSRVRSAWIEGNAFSCIEI
                     KRPHPKSKLAGGYLPSEKRVDWIVRMMQRVSEIMEKEPAPERTAVFYCFDPATMRASQ
                     KADVNIPAAPINPFIPPWGPGPLRRTMALPSFARSTVPRMINRWRSAGSPVLPLASDH
                     IRSWSKYLHLGRPVSLTPSSVKRLNRQRKGYPIHVWPAPIDLERTIIDAGMTAVSDKM
                     DPTVLQTSRGETRWMKPGTKPLSPELWTRMADPSEDSELLLAEAKEYPTWSDLDMSER
                     REHLGHLASRLQCDSIAIDEGAPPWEMPRFIGHRGAGKSHKEG"
     gene            3921..>4728
                     /locus_tag="HA345_06520"
     CDS             3921..>4728
                     /locus_tag="HA345_06520"
                     /inference="COORDINATES: protein motif:HMM:NF024742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85047.1"
                     /translation="MSENSVQKEKRNVERGFAFYDWGKSAFETSVSVAILPAWFTYLF
                     LEANGLNVRIGSIEMTGDAVWSFAVSGAALLVALVSPSLGVLADRRRVKMWWLRILTY
                     TGVVGTLLIAAAPFLPISTQWIWMMVMFVIANVGMNGAGVFYNALLPHLGEPEDMDRI
                     SNLAFAYGYLGGGLLLVFHLGLLIGTGYADWAMMFAIASSGVWWYVFALLTFRWVPEP
                     EISNEMEPLGFVESTKLGVSEVIKTLSEVRRFKVLFLYMFAYFLFIDGINS"
BASE COUNT         1017 a         1137 c         1220 g         1354 t
ORIGIN      
        1 gttcaagtgg tttgtaccgt cgcttcaatc gatgcctttg aggctcttcc aaccagtgct
       61 atgcgtcact ctttgacggg atctgccatc ggccgactca gttcacccag tgctgcaact
      121 ttggtagccc atcttcggcg tcgttgtgtc tctagaggcg cagctgtaga tgaacgaata
      181 ctggttgcaa tagtcgaaca tgcgaatact tgggggggtt cagcccatgc gcttgacata
      241 gtcctagcct caattgaggt gggctcgatt ccaatggatg agaaagatgt cctgatttta
      301 ctcgatggac gtccgattga tgctcgttca gaaatccgtc ctgattggaa cccggaggcg
      361 attggagagc gtctcgttca gacagttctc gatgatgtac ttcctcgtgg tgttgatgtt
      421 gaggtcacag gagagatcga ggtgaaacct ctctctgata gctggtctcc tgctgagttc
      481 gagcttccaa gcggccgcct tattccgtca tctcaacccg agggcgagcg aggtcctcag
      541 aaggtcgccc cagtcatttc agcgcgcatc gacgaacgct tctctgatgc cgagagtgag
      601 ttacatcggc gtcgctttgc acttcatgag attgaacgtg aacttgagat aatccaatcg
      661 agaatggttg attccacgcc ggctgatatc gtgggcctta ctgatcgatt acttgctctt
      721 gagggtcagt tagatgctat ttctgaaacg ccgttgggta ctgatttagg tcctatttct
      781 cccttcgatc ctggcgtcat tgaggttgag gtgaagtatc caatactcca tcctgtctct
      841 gggcaagtgc ctcatcttga agaagcccgt caaaatcatg gtactgctgt tctgagaaag
      901 cgtaaggtca agattccagt ttgattagag atttcggaat ccttgttcgg catgtgcatc
      961 tgcattaagg tgggcttgaa tcgtttctcc attgattaga atggcatctg gatgaactaa
     1021 tccggggcag attccgattg tctttctcca tgacggatcg tcacggacat tctcatacca
     1081 gaatgggaaa gcagagcatt gagccggttt tgcagcgtga atatcacaac ttttgtcgtc
     1141 ttgtatgtat atgcaaatcc cgtctccatt cgatttcaga acccagcgcc catcatgggt
     1201 ttgacgggca tcacgctcca accattcctg tgtatccatc tcatgatgtc ttgcaattcg
     1261 atgtgcatcc tcctttgaga ggtaaactaa gccatgaggc tcatcacagc atcgtccaca
     1321 gtttgggaga catgtgaaga gaatcccgtc tttccaccat ggctggatat gacgcctcgc
     1381 catgttgttc gggaatcata ttcagggttg aaccctacgt ttctaaatca ggaaatacat
     1441 gcaaagggtt caagtcagaa attgaccggt tacatttcca cacggagcca gtaaccatgt
     1501 ctgaggatga gaagtcattg tttgaggtgc ttccatcgca tctcgataca gggcttcgtg
     1561 gaattcccgt tggtacctgt ggaacttcct ttgtcgaccc tgttgatggg gttcattatg
     1621 tgggttatcc gatttctgat cttgctgatt tcgaccctga ggacatcgtt cacctattgt
     1681 tcaacaagtc gcttcctact gccgaggagt ctaaggcgat gaagcaaaat ctcgcatcac
     1741 gtagtgtaat ccccgtaggt gccctcgatt tattcgaatc gattggtgag gggcaaggac
     1801 atccgatgga ttggcttagt atcggtatca tggcacttgg tcgcgccgag gctgacgatg
     1861 atatccttga ggatgggatg aatctcattg cttggatgcc tgaactcatg gctcgcccct
     1921 tcatgaagcg cgggggccgc ggcgacattg ccagtccttc aaatccatct ttgggcatgg
     1981 tggggaattt cgtttcgatg ctcggcatgg aaggtgatga tgcccgccgt gctgagcgtg
     2041 tcctgaagtc cttccttgtt cttcatatgg accacggagg aggaaacttg tctacctttg
     2101 ccggaaaagc cgtcgcctcg gggcgagcct cccttttctc ctccatcgct tctgcgatga
     2161 atgctctcag cggtcctctt catgggcggg caaatcagtc ctgccttgaa ttcgttcaga
     2221 aggtggggac gtcggatttg aatgaggttg aggccttcgt cagagccgaa cttgctgcta
     2281 agcgcccaat ctttggattc ggtcacgctg tccttcgtgc ggaggatcca cgtgctactg
     2341 tccagatgtc catcggagaa gaggtctgtc ctgatgatcc attgttctct acagtgcgta
     2401 ctctgcgcga ggttgtccct cgggttcttg gtgaaaatga acgcattagt aatccgaacg
     2461 cgaacgttga ccttgtctca ggaactcttc tctacaatgc aggtttcatg aaaccatctt
     2521 actacacgac tttcttcggt tgggcccgcg taatcggtat cacggctcaa attgtcgatg
     2581 agcgaaattc ccgcggtggt aagggtgtac caatttaccg gccaaagtat atcgcaaaag
     2641 atcgcactgt tcgccgtatc taatcagccc tctttgtggc ttttcccggc tccacgatgt
     2701 ccgatgaatc gaggcatttc ccaaggaggt gccccctcat ctattgcgat cgagtcacat
     2761 tggaggcgac tagcgagatg gcctagatgc tctcgccgtt ctgacatgtc gaggtcggac
     2821 catgtcgggt attcttttgc ttctgcaagg agtaattcgc tatcctctga cgggtctgcc
     2881 atccgtgtcc agagttctgg gctcagaggt ttcgttcctg gcttcatcca gcgggtctca
     2941 cccctactcg tctgtaggac cgtggggtcc atcttgtcac tgactgcagt cattcctgca
     3001 tcgataatgg tccgttccag atcgatgggt gctggccata cgtgaatggg gtatcctttc
     3061 cgttgtcgat taaggcgttt caccgatgag ggtgttaggc ttacaggacg gccgaggtgc
     3121 agatattttg accatgaacg gatatggtct gatgcgagtg ggagtacagg tgatcccgcg
     3181 cttctccagc gattaatcat tcgaggtact gttgatcgag cgaacgaagg tagggccatt
     3241 gttcgacgta atggcccagg gccccaaggt ggaataaagg gattaatcgg cgctgcaggg
     3301 atattgacat ctgccttctg acttgctcgc attgttgcag ggtcaaagca gtagaagaca
     3361 gccgtgcgct caggtgcagg ttccttttcc ataatctcac taacacgctg catcatacga
     3421 acaatccaat cgactctctt ttcagatggg aggtatcctc ctgcaagttt cgactttgga
     3481 tgcggacgct taatctcgat acatgagaag gcattgcctt ctatccaagc tgaacgtact
     3541 ctagaatctt caatcatgtc tgagaataaa tcgaatcctg cattccgtaa atcatcggag
     3601 tgattctgtt cgacataggg gcgtagaccc tcgtattgct cgtctttctc actacgttca
     3661 atacgggcgt tatgatgcag tatgagttct ccatcaatcg acatacggat gtcatattct
     3721 gctccgtcag ccactgtcat tgcatgggca atggcctcaa tcgaattctg ccgaggctgg
     3781 gtccattcgt tactcatggt gccgccccct catcctatct tctcccggtc aagtccttca
     3841 atccgatgaa cggattccaa tgtgataaag cacaatggtg atatggcgcg cgatagattt
     3901 gctgagaagg agttgctact ttgtccgaaa attcagtgca gaaagaaaag cggaatgttg
     3961 agagaggatt cgcattctat gattggggta aatccgcttt tgagacaagt gtatcagttg
     4021 caattcttcc cgcttggttc acttacctct ttctagaagc caacggattg aatgttcgta
     4081 taggctccat tgagatgact ggggatgcag tatggtcctt cgctgtgtca ggtgcagccc
     4141 tacttgtcgc tttagtcagt ccttcactcg gcgtccttgc tgatcgtcgt agagtcaaga
     4201 tgtggtggtt gcggattctc acatatactg gtgtagtggg aacgcttcta attgcagcag
     4261 ctccgttttt gcccatctca actcaatgga tttggatgat ggttatgttc gtgattgcta
     4321 atgtgggtat gaatggtgca ggggtgttct acaatgccct tctccctcat ctgggagaac
     4381 cagaggacat ggatcgcatt tccaatcttg cttttgccta tggatacctt ggaggagggc
     4441 tactattggt cttccatctt ggcctattga ttggtactgg atacgcagat tgggcaatga
     4501 tgttcgccat cgctagttca ggagtatggt ggtatgtttt cgcacttctc acgttccgct
     4561 gggtcccaga acctgagatt tccaatgaga tggaacctct aggtttcgta gaatctacta
     4621 agttgggagt atcggaagtc atcaagacac tctctgaagt tcgtcgtttc aaggtcctat
     4681 tcctctacat gttcgcctat ttcctcttca ttgatggaat taatagcg
//
LOCUS       DUKB01000191            3022 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_82906, whole genome shotgun sequence.
ACCESSION   DUKB01000191 DUKB01000000
VERSION     DUKB01000191.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_82906"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..720
                     /locus_tag="HA345_06525"
     CDS             <1..720
                     /locus_tag="HA345_06525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85048.1"
                     /translation="AGGVYAQLTGFEMPEISQQIYAASLVATTDNSAIISWSTTKESD
                     SQISCSSDGGQAITKSSDVLTISHQLEVGGLAAGTNYTCVMSASAGAITEEIMIETSS
                     ESDTTPPEILNTGTTDENGITTISWFTNEDTFGKIVLDSSEDVSEFGKNHEVSYSLCV
                     GNHEAEITATDPSGNVAVENLIFVVEGEGEKCSESGESGKVSTDDETSMLSSTNVQIV
                     VLVVILLVFLALIRTRKDTFE"
     gene            complement(792..1685)
                     /locus_tag="HA345_06530"
     CDS             complement(792..1685)
                     /locus_tag="HA345_06530"
                     /inference="COORDINATES: protein motif:HMM:NF015411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HIH85049.1"
                     /translation="MSNQQASTPGVSVIGLGAMGSGIAHTLIEGGFTVSVWNRSRTKV
                     DALVASGAIGCNEPGDALNANTDVIVCVSDYAVWQRIIQEHSLASRFEDTCIIQLTTG
                     TIDDVQTHASLIHDNGGRLVEGAVMCYPRNLGTDEAALLLSGAPDVMDECAPILTALD
                     ANWTSLGEDINQPSVLSRSLMSGLTGALMGLVNGAAICRAGGVPLDVFMKFNEGTNSI
                     LLAEQKRLIEAIRDGRTKENEASIKAWTEGNQALNSVAASLGTDLTLQNAIQAVFQEG
                     RRRGLDEHDLSALVDVFDPGQ"
     assembly_gap    1814..2123
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(2222..>3022)
                     /locus_tag="HA345_06535"
     CDS             complement(2222..>3022)
                     /locus_tag="HA345_06535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85050.1"
                     /translation="VDGFFGCSDGDGDGIADQYGEIPGPIPQDSDSDGVVDSEDNTDS
                     ESDESFIDSLFSGDRDTVTTTVGFGAIILAILALLQTNMVAATLPEAFKWVQVLRRSH
                     KLSNEEIKELTYLQSLVQAYHGDPQELTEELEQLKGDLTARYTNNEIKKQTREKLFTL
                     IDDLLVSSHEELNRIAHNDSYFGLTGSIDSEQRTKLLKEKLAMSEHTGTTAMSQPDQS
                     SLSENTEPSVNQTGTVKDDGYEWLEWPQGSGGWYYRRPHSNSSWIKWE"
BASE COUNT          703 a          652 c          622 g          735 t
ORIGIN      
        1 gctggtggag tttacgctca actaaccggc tttgaaatgc ctgaaatctc tcagcaaata
       61 tatgcggcaa gtctagtggc tactaccgat aattctgcga ttatttcatg gtcaacaacc
      121 aaagaatccg attcgcaaat atcttgttca tcagatggag gtcaggctat cacaaaatct
      181 tccgatgtgc taacaatttc ccatcagttg gaggtaggag gcttggcggc tggaacgaat
      241 tacacttgtg taatgagtgc ttcagctggt gcaattacag aggaaataat gattgaaacc
      301 tcatcagaaa gtgatactac cccacctgaa attctcaaca caggaacgac agatgagaat
      361 ggtattacaa caatatcctg gttcactaac gaagacacct tcgggaaaat tgtactagac
      421 tcttcagagg atgtgtcgga attcggcaag aatcatgagg tctcttactc tctttgtgta
      481 ggtaatcatg aagcggagat tactgccaca gatccttctg gaaacgtagc agttgagaat
      541 ctcattttcg tagttgaagg cgagggtgag aagtgctcag aaagcggaga aagtggtaag
      601 gtttcgaccg atgatgaaac ctctatgttg tcatcaacca atgtgcaaat cgttgttctg
      661 gtggtcatcc tgctagtgtt cctagcactg atacgaacac gcaaagatac cttcgaatga
      721 cctttcaaaa tagtcatttg cgtgggtagg gacgaatatg gtccactgta aacccttgcg
      781 aactttatcg gtcactggcc cggatcaaac acatcaacca aggcagagag gtcgtgctcg
      841 tcgagccctc ttcgccgacc ttcctggaat accgcttgaa tcgcattctg tagtgtgagg
      901 tcagttccca gcgaggctgc gacagagttc agcgcctggt ttccctctgt ccaggccttg
      961 atagaggcct cgttctcctt ggtacgtccg tcgcgaatcg cctctatgag gcgtttctgc
     1021 tcagcgagaa ggatgctgtt ggtaccttcg ttgaacttca tgaatacgtc cagaggtaca
     1081 ccaccggctc gacagatagc cgcaccgttg actagaccca ttaaggcccc cgtaagtcct
     1141 gacattaatg atcgactcag aaccgagggc tggttgatgt cttctcccag actcgtccaa
     1201 ttcgcgtcca gagcagtcaa gattggagca cactcgtcca tcacatcggg tgcaccggac
     1261 agtaagagtg cagcttcgtc cgtgccaaga ttgcgggggt agcacatgac tgccccctca
     1321 acgaggcgac caccgttgtc atggattaga gacgcatggg tctgcacatc atctattgta
     1381 cccgtcgtca gctgaatgat gcaggtatct tcgaagcggc ttgccagact atgctcttgt
     1441 attatgcgct gccataccgc gtagtcggag acacatacga tcacatcggt attggcattc
     1501 agtgcatcac cgggttcatt acagccgatg gctccactcg cgaccaacgc atcgaccttg
     1561 gtgcggcttc ggttccacac ggataccgtg aagccccctt cgatgagggt atgggcgata
     1621 ccagaaccca tggctcctag cccaatcacc gaaactccag gagttgaggc ttgttgattg
     1681 ctcatgtgat gtgcttcacc gaggggaata ttgtagtttc taacaccata gttcagagag
     1741 tagcgatacg aacggcccac tcacagccat tccgaacaag atctctgttc gcatgggtat
     1801 tcggatgaac cctnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnngcatggg tattcggatg aacccttacg atttatccaa
     2161 ttcacttgtt cgattaatat aatcagtaga caaactaatg gctaattcgt taaattggac
     2221 cttattccca ttttatccaa gatgaattag aatggggcct tctgtaatac catccaccac
     2281 taccttgagg ccactcaagc cattcatatc cgtcatcttt tacggtaccg gtttgattaa
     2341 cggaaggctc agtattctca gatagcgagg attgatcggg ttgagacatt gctgttgttc
     2401 cagtatgttc actcatagct aatttttctt tgagtaactt cgttcgttgt tcagaatcaa
     2461 ttgaacctgt tagcccaaag taagagtcgt tatgggcgat acgattcaat tcctcgtgag
     2521 aagatactag gagatcatca atcaatgtga agagtttctc tcttgtctgt ttcttaatct
     2581 cattgttagt ataacgagca gtgagatctc ctttcaactg ctcgagttcc tcagtaagtt
     2641 cctgtggatc accatggtag gcttgaacaa gagattgaag gtaagttaat tccttgattt
     2701 cctcgttgct aagtttgtga gaacgcctca atacttgtac ccatttgaat gcctctggaa
     2761 gggttgctgc gaccatgttt gtctgcaata gtgccagaat tgctaagata atcgcaccaa
     2821 atccaaccgt agttgttaca gtatctctat cgcctgaaaa taaggaatct atgaatgatt
     2881 catccgattc agaatcagta ttatcttccg aatcaactac tccgtccgaa tcactgtcct
     2941 gaggaattgg ccccggtatc tcgccatatt gatcggctat tccgtcacca tctccatcag
     3001 agcacccaaa gaatccatca ac
//
LOCUS       DUKB01000192            7866 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_68749, whole genome shotgun sequence.
ACCESSION   DUKB01000192 DUKB01000000
VERSION     DUKB01000192.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 7866)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 7866)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7866
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_68749"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            222..4571
                     /locus_tag="HA345_06540"
     CDS             222..4571
                     /locus_tag="HA345_06540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85051.1"
                     /translation="MKHPSVEPAASRTAGYLLVLLMLGLSLSPLISTVSANPSSITTF
                     SSGNSSETVLGNTTVDVALERNTTITGSSFELQYLSSDPSPGIVQMDIGNDGLLEWFF
                     GGNRYGELGSQTRFSTNGSIASNTPTKNTWAPIWSFDLPSEANVDLSELNISYAPEMG
                     GGVVPTGGSIDDMTVADVDNDGKSEIVILDRDKDPGNGSHPHIGIIDWTLSSGFSTVS
                     WTWTCAGGTELMTGDANADSRMDVYLIDAQNGSVCLHLANNTGIAPFANISLTSAGSL
                     GDVYVDDIDADGSSDIVYSTSDGNLCSTLRRSGGYSSLFVNITVPSNSSGMGGPGGSS
                     TSISDILSVNLWPGVKTAAVAEDMEGYVSFWNFSTNQQGGFTWVISMVNATSLEDNIQ
                     AVDIDGDGDDDLYGNAPMSGTTMAVFTNGGYQSTQSMAFFANEPVFADWDGSGTMTAL
                     LIDSGTSDGTDSTFTGDIDVRSISASGIASSGSVLLEPITAPTRMVVEDIDGDGVPEH
                     IVAGGEATYNIFIAGHHNMLVDFDDDTIAEVNISGYAGNGSQGVDEIEWLDTMGILPS
                     IIQSELTASTPSITDFYGIDYSTLQPDAYVRGEGAVLGSNLLITYSLSAQVDTNSGLG
                     NLTNALNREMVAGSGPFDVGLVFNMTSSTGQFTLQNLAITHIPGATSIDLPTEPVLIQ
                     MNISEDMAMQLQPPFVAFEWNNTSSDDESNFMMYEIHRTKDNSPLNLMTPYSTSQGSF
                     FMDQSLQPGTYRYYVRAMHQNSITSNLSSPLMITIDPPPPDTTPPDPVTNLTVLDVQG
                     DEGGHLLVSWDDGGSVDLNHHLVFVDTVHFTNASTRVQVANLTAGNSSIVVNMTSDVL
                     DNTGSVQQAGISIMDNTDHYLAVVAVDNLGNFNATVVTVGPVRALNNSNIFSSMTVEV
                     TTSSTLDVDGSTLPSVTRGESITISGLLDLDTESNVGRTVQIVLSDDAHSTQVIAITD
                     ASGAFSVAYSDWSTLLDSTSRFVGVVNVSATYAGGSTSMQQVILGSSATSEFVSTVTA
                     TVSAVQSSVQLDSDNQGTARLQVTTDSRDLSLLGAVSFDWTLGNATESIISSTGISVL
                     DQTGFIEEAVDYPGGGEIEFVYDENSRPFWLLLNPSTVSIDLQPPPLQTDTGGGANVT
                     DPTPDPFLLSLNVNCGDLPWSMSVNASLWSSDDSNLLECTVMNPNQNTVYVDLDLEMN
                     VIGVEIESDLGGSFSIQAGVDQILVLEIQDDTQFRDGSVDLSLTASAPDYQDSVTTLT
                     IQFQFTEETDSLTSPSNSSEGGASSDNNLVIIGGIVGVILVLGLLGAIMLRSGSDDEE
                     DLFSDDDDDEVGELPMVVSGGAKATRAEADIPKGVPLDELMKQGSRPAPVSMSKSKSP
                     SAVTTKSKEEDDSKEEDESSDEIESGEDSEEDYTGSDNYHVDDDGTEWWKDELDVWWW
                     RGPDDEDWSEYTE"
     gene            4613..5374
                     /locus_tag="HA345_06545"
     CDS             4613..5374
                     /locus_tag="HA345_06545"
                     /inference="COORDINATES: protein motif:HMM:NF021287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome assembly chaperone family protein"
                     /protein_id="HIH85052.1"
                     /translation="MGLPRPFELVVQHGTERERLGGTAICGFTTKGAVGAIAVDWVIK
                     TFEMEQLGSVLSESFPAMALVRGRRPQHPVRIYQGDGIGAFVSDIAFPDEFNLSFAET
                     VIKWFRDGGFDRLVMIDGVFLPNMTGEDIPPVFGVGSTDISRARLEEIGLESVEHGIV
                     PGITGYLLAEADRQGFDAYAILSPSNPGYPDARAALPALEALSEMLDRDIPLEGLMEK
                     AIVIEQKVREMMQEHQLALPEPKMDETSDDDPMVL"
     gene            complement(5377..5940)
                     /locus_tag="HA345_06550"
     CDS             complement(5377..5940)
                     /locus_tag="HA345_06550"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013286.1,HMM:TIGR00049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HIH85053.1"
                     /translation="MIGITEKASEMLAQFQSSADDDIERVLRVEIIGRGANGFRYDLN
                     LVDLAEKIASDVICEVEGTTVIIAERSAPYMEGAILDFVETLMGGGFQFENPNPMWVD
                     DISKSVADVISNDVSPMVASHGGTVELLGVDEDKAIIAFGGGCQGCGMVDVTLKQGIE
                     VVIREKVPAITGIVDMTDHAAGTNPFY"
     gene            complement(5990..6871)
                     /locus_tag="HA345_06555"
     CDS             complement(5990..6871)
                     /locus_tag="HA345_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85054.1"
                     /translation="MNKGLTITGGVVTGIFLLLAVVGMALSGSAGENLENMDDDPSPY
                     YTESVNGNATFTYIDEDRKGSIAFQVLVSLDYVDSDEDGFVDGCSNYTVTVTDEDGNN
                     VTNDVINRGCVFDEWTEEDQMHEGLVISAYVCETLFAKSDCKINENYTVSVTDSNNES
                     VDFTLFDNDAYLVIITEDLGGLVGGIGLSSVACCCGMPVGLILLIVGLAIGGPQPQVQ
                     MVNQFHMPVGNQVPVIGQMQAPVGQMQAPVGQMISQNTQMAPPISTPSQDMTAPEVPT
                     SMVDAHQQQFQQPPSDS"
     gene            6970..>7866
                     /gene="moaA"
                     /locus_tag="HA345_06560"
     CDS             6970..>7866
                     /gene="moaA"
                     /locus_tag="HA345_06560"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HIH85055.1"
                     /translation="MGAQFDRRGRPFRDLRISVTDRCNMRCDYCMPADVFDANHEFLP
                     RSDLLTFEEIEEVVISLIPHGLKKVRITGGEPLLRRNLEVLIRMLSKHSLDLALTTNG
                     LLFTSRAEALANAGLNRVTFSLDSLDPVTFERITGKSGHSIQRIIEGIEKAVTLGLSP
                     VRINSVIRRGVNEADIERLIERFQHLPVALRFIEFMDVGNHNRWDLASVVPSEEIRKH
                     VEERWDLQPTPSLHSGQVAQHWSLDSDTGFEVGFISSVTEPFCGDCNRARLSANGHIY
                     TCLFATSGHDLRPVLRNPEGLET"
BASE COUNT         1976 a         1847 c         1875 g         2168 t
ORIGIN      
        1 cagcggtgac tccctgctcc gtcccctcaa gatcgattcg agagttaccg acacggatgg
       61 aaagacgcgc tttcaaaccg tctcccgact cgtcgctcat ggaccccacc gaatgactca
      121 accattctcg ggcttgactt aaccgttccc gtcgtttcaa ctgagtttcc aaacccgaat
      181 ctcgccgatt ccttatgagt gcgagggggg aacgggagtc gatgaaacac ccctcagtgg
      241 aaccggctgc atcccgtact gcaggatatc tactcgttct tttgatgctt ggattgtccc
      301 ttagtcccct tatctcgacc gttagcgcca acccctcatc aatcacgaca ttcagtagtg
      361 ggaacagcag tgagacagtt cttggtaaca ccacagtgga tgtggcgttg gagcggaata
      421 ctacgattac agggtcaagt tttgagttgc aatatctttc ctcagacccg agtcctggta
      481 ttgttcaaat ggacattggc aacgacggtt tgcttgagtg gttctttggt ggcaatcgct
      541 acggagagct tggatcgcag actcgattca gtactaatgg ctcaatcgca tccaatactc
      601 caaccaagaa tacctgggca ccaatctggt ctttcgatct tccatcggaa gcaaatgttg
      661 acctctcgga gttgaacata tcttatgccc ctgaaatggg tggaggtgtg gtgccaacgg
      721 gaggatcaat tgacgatatg acggtggccg atgtcgataa tgacggtaag tcagagattg
      781 taatccttga tcgagataaa gatccaggca atggttctca tccacatatc ggaatcatcg
      841 attggactct atcttctggc ttttctactg tctcttggac atggacttgt gcaggtggta
      901 ctgaattaat gactggtgat gcgaatgccg attctcgcat ggatgtgtat ctaattgatg
      961 cgcagaatgg ttcggtttgt ttacatctag cgaacaatac tggtatcgct ccattcgcaa
     1021 atatctctct tacttcagcg ggctcattag gagatgtcta tgtcgatgat atcgatgcgg
     1081 atgggtcctc agatattgtg tacagtacct ccgatggaaa cctttgctcg acccttcgtc
     1141 gttctggagg ttattcgagc ctctttgtga atatcacagt accttcaaac tcaagcggaa
     1201 tgggtgggcc gggaggatct tcaacgagta tttcggacat actctctgta aatctctggc
     1261 ctggagtcaa gacggcagcc gtcgcggagg acatggaggg atatgtctcg ttctggaatt
     1321 tttccaccaa tcaacagggt ggttttactt gggttatcag catggtcaat gcaactagtc
     1381 ttgaagacaa tattcaggcg gttgacatcg atggtgatgg tgacgacgat ttgtatggta
     1441 atgctccgat gtcaggcaca acaatggcgg tcttcaccaa cggaggttac caatcgacac
     1501 aaagtatggc cttctttgca aacgaaccag tgtttgcaga ttgggatggt tcaggaacaa
     1561 tgactgcctt actcattgat tctggaacaa gtgatggcac cgattcaaca ttcactggag
     1621 atattgatgt ccgttcaatc tctgcttcag gcatagcctc cagtggatca gtccttctcg
     1681 aaccaatcac agcaccaact cgtatggtcg tcgaagacat cgatggtgat ggtgttccag
     1741 agcatattgt ggcaggtggt gaagcgacat acaacatctt cattgcagga catcacaaca
     1801 tgctagtcga tttcgatgac gacactatag cggaggttaa catcagtggt tatgcgggta
     1861 acgggagtca gggtgttgat gaaattgagt ggttggatac tatgggaatc cttccaagta
     1921 ttatccagtc ggaactcacg gcgagcactc cgtcaatcac ggatttctat ggaattgatt
     1981 actctacatt gcaaccagat gcatacgttc gcggtgaagg cgcagttctc ggttccaatc
     2041 tcctgattac ctattctctt tctgctcaag tggataccaa ctctggtctt ggcaatctca
     2101 ccaatgcgct gaaccgagag atggtagcgg ggtctggtcc ttttgatgtg ggccttgtgt
     2161 tcaacatgac ttcatccact ggacagttca cgcttcagaa tcttgctatt acacacattc
     2221 caggtgctac tagtatcgac ttgccgactg aaccagtttt gattcaaatg aatatctctg
     2281 aggatatggc aatgcaactt caaccaccct ttgttgcttt tgaatggaat aatacctcct
     2341 cagatgacga atcgaatttc atgatgtacg agatccaccg cactaaggac aattcaccgt
     2401 tgaatctcat gactccttac tcaacctctc aaggatcgtt cttcatggat cagtcccttc
     2461 aaccagggac ttaccgctac tatgtgcgtg cgatgcatca gaacagcatc acctcaaatc
     2521 ttagttcacc tttgatgatt acaatcgatc cacctccgcc tgacacaact ccacccgatc
     2581 ctgtaaccaa tctgacggta ttggatgtgc aaggggatga aggtggccat ttactcgtat
     2641 cttgggatga tgggggatcg gtagatctca atcatcatct ggtgtttgtg gatacggtcc
     2701 acttcactaa cgcatccact agagtgcagg ttgcaaattt gactgcagga aattcctcta
     2761 ttgtggtcaa catgacttcg gatgttctcg acaataccgg tagtgttcaa caggctggca
     2821 tatcgattat ggataacaca gaccattact tagcggtggt agccgttgat aaccttggaa
     2881 atttcaatgc aacagtcgtt actgtcggcc ctgtacgtgc tctaaataat tccaacatct
     2941 tttcatccat gaccgtcgaa gtcacgacat catctacatt ggatgttgac ggttcgactt
     3001 tgccttcagt cacacgcggt gaatcgatta caatttcagg actattagac ctcgatacag
     3061 aatcgaatgt agggcgaacc gttcagattg ttctcagcga tgatgcccat agcactcagg
     3121 ttatcgctat cacggatgcg tcgggggctt tctccgtggc atactccgat tggtcaactc
     3181 ttctcgattc gaccagcaga tttgttggtg tagtaaatgt ctcagctaca tatgccggtg
     3241 gttcgacatc gatgcagcag gtcatactcg gttcatctgc tacgtccgaa tttgtgagta
     3301 cagtaactgc gacagtcagt gcagttcaat catctgtgca acttgattcc gataaccagg
     3361 gaacagcccg cctccaagtc actaccgact cgagagatct ctctttactc ggcgcagtat
     3421 cctttgattg gacccttgga aatgccacgg aatctatcat atcatcaacg ggtatttcgg
     3481 ttcttgatca gacaggcttc attgaggaag cagtcgacta tccgggtgga ggggagattg
     3541 agtttgttta cgatgagaac agccgtccat tctggcttct gctgaatcct tcaacggtat
     3601 cgattgatct ccagcctccg ccgctacaga cagacactgg tggaggcgcc aatgtgacgg
     3661 atccaacacc agatccgttc ctcctctctc tgaatgtgaa ttgtggtgat ctgccttggt
     3721 ccatgagtgt gaatgcctcg ttgtggtcga gtgatgattc aaacctgctt gagtgcacag
     3781 tcatgaatcc aaatcagaat acagtatacg ttgatcttga tcttgagatg aatgtgatag
     3841 gtgtcgaaat cgaatccgac cttggagggt ctttcagtat ccaagcggga gtagatcaga
     3901 ttctcgttct agagatacaa gacgacactc agttccgtga tggtagcgtt gatcttagct
     3961 tgacggcatc ggctccagat taccaagata gtgttactac cctgacaatt cagttccagt
     4021 tcactgagga aacagatagt ctaacaagtc cttcgaatag ttcggaagga ggagcaagta
     4081 gcgacaataa tctcgttatt attggcggga tcgttggcgt aatcctcgta ctcggattgt
     4141 tgggggccat catgctccgt tctggatctg atgatgaaga ggatcttttc tcagatgatg
     4201 acgatgatga agttggagaa cttccaatgg tcgtttctgg tggagcaaag gccactcgtg
     4261 ctgaagcgga tatcccgaaa ggagtaccac tcgatgaact catgaagcag ggttcacgcc
     4321 cagcacccgt atcgatgtcg aagtcaaagt cgccttctgc tgttaccact aaatccaagg
     4381 aagaggacga ttctaaggaa gaagatgaat cgtcagatga aattgaatct ggagaagatt
     4441 cagaagagga ttacactggc tcggataatt accatgtgga tgatgatgga actgaatggt
     4501 ggaaggacga actcgatgtc tggtggtggc gtggacctga tgacgaggat tggtctgagt
     4561 acactgaatg accggacgag ggttgaaaac gacctaaggt gaggttgagc caatgggtct
     4621 accccgtccg ttcgaacttg tagttcagca cggtactgag cgcgagcgtc ttggagggac
     4681 agctatctgt ggtttcacta cgaagggagc cgttggcgct attgcagtgg attgggtcat
     4741 caagacgttt gaaatggagc aattaggttc ggttctaagc gaatcattcc cggcaatggc
     4801 ccttgtccga ggacgtcgcc cccagcatcc agtaagaatc taccaaggcg atggaattgg
     4861 ggcctttgtt agcgatatcg cctttcctga tgagttcaat ctctcttttg ctgagactgt
     4921 catcaagtgg ttccgtgacg gtggattcga tcgccttgtg atgattgatg gtgtgttcct
     4981 tccaaacatg actggtgaag acatccctcc tgttttcggt gtcggttcta cagatatatc
     5041 gagagctcgt cttgaggaga ttggtttgga atctgtcgag catggaattg tgccaggaat
     5101 caccggctat cttctagcag aggcagatcg ccaaggtttc gatgcctatg caatcctttc
     5161 cccatccaac cctggatacc cagatgcgcg tgcagcactt ccagcacttg aggcactttc
     5221 ggagatgctt gatcgagaca ttccacttga gggccttatg gaaaaggcga ttgtcatcga
     5281 acaaaaggta cgagagatga tgcaggagca tcaacttgca ttacctgaac caaagatgga
     5341 cgaaacttca gatgatgacc cgatggtgct ctaatttcag tagaaaggat tcgtcccagc
     5401 agcatgatcc gtcatatcaa caattccagt gattgctggg actttttctc ggattaccac
     5461 ttcgataccc tgcttcagcg tgacatccac cattccgcaa ccctggcatc cacctccaaa
     5521 agcgatgatg gccttgtctt catctacacc gagaagttcg acagtacctc catgagaggc
     5581 caccattggg ctaacatcgt tgctgatgac atccgctacg gattttgaaa tgtcatcgac
     5641 ccacattgga tttggattct caaattgaaa tcctcctccc attagtgtct caacgaagtc
     5701 aagtattgca ccttccatgt atggggcact tcgttcagcg atgattacag tcgtcccttc
     5761 gacttcgcaa atcacatcgc ttgcaatctt ttcagctaga tcgacaaggt ttagatcgta
     5821 gcgaaaccca ttcgctcctc tcccaataat ctctacacga agtacacgtt cgatatcatc
     5881 atcggcacta ctttggaatt gggcaagcat ctcgcttgcc ttctcagtga tgccgatcat
     5941 gactacccca ctccgtggtt ggatttgaat ctgagtgatt taacctattt caagaatcag
     6001 aggggggttg ctggaattgc tgttggtggg catcaaccat cgacgttgga acttctgggg
     6061 ctgtcatatc ctgtgacgga gtagagatgg gcggagccat ctgagtattt tgtgagatca
     6121 tttgcccgac aggtgcctgc atttgcccga caggtgcctg catttgtccg ataactggaa
     6181 cttgatttcc aactggcatg tggaattgat tgaccatctg tacttgaggt tggggaccac
     6241 caattgctaa tccaacaatc agaagaatca aaccaacagg cataccgcaa caacaagcca
     6301 cggaagagag acctatgcct ccaacaagac ctcctaaatc ctccgtgatt attaccagat
     6361 aagcatcatt atcaaagaga gtaaaatcaa ctgattcatt gttcgaatct gtcactgata
     6421 ccgtgtaatt ttcatttatt ttacaatccg atttggcgaa cagggtttca caaacatatg
     6481 cggagataac taatccttca tgcatctgat cttcttctgt ccattcatca aatacacaac
     6541 ctctgttgat tacatcattt gtaacattat taccatcttc atctgttact gtgaccgtgt
     6601 aattggaaca tccgtcaaca aaaccatctt catcactgtc aacataatcc aaactaacta
     6661 gaacttggaa tgcgatgctg ccttttctgt cttcatcgat ataggtgaat gtagcattcc
     6721 cgtttactga ttctgtgtaa tatggggatg gatcatcatc catattttca agattctcac
     6781 cagcggatcc agaaagtgcc atgcctacta ctgctagtag gagaaaaatc cccgtaacta
     6841 ctccacctgt gatggttaga cctttgttca tacctcttcc ttgcccggtt cgtatttcaa
     6901 atccttgtat ctcgtgacct tcacaggact agaggagggt tcatcgtcgt caacagtaag
     6961 aggatgtaca tgggggctca atttgatcgt cgaggccgtc cattccgcga cctccggata
     7021 tctgtaactg atcgttgcaa tatgaggtgc gattattgca tgcctgccga tgtcttcgat
     7081 gctaaccacg aattccttcc tcgtagcgat ttactgactt ttgaggagat agaagaggtt
     7141 gtaatctcac ttattcctca cggtttgaag aaggtccgaa ttaccggtgg agaaccgttg
     7201 ttgaggcgca atctcgaagt attaattcgt atgttgtcga agcattcttt ggatttagca
     7261 ttgacaacga atggactcct tttcacgagc cgtgcagaag ctcttgctaa tgcaggactt
     7321 aaccgagtca ccttcagtct cgatagcctc gatccagtta cttttgagag gattaccggg
     7381 aagtcaggac attctattca acgaattatc gagggaattg agaaggcagt tacgcttggt
     7441 cttagtccgg tacgcatcaa ttctgtgatt cgacgaggcg tgaatgaagc agatattgag
     7501 cgtttgatag aacgtttcca acatctaccg gtcgcattac gattcattga gttcatggat
     7561 gtgggcaatc ataaccgatg ggacctcgca tctgtagtcc ctagtgaaga aatcaggaaa
     7621 catgtggaag agcgttggga tctccaaccg acaccctctc tccattcagg ccaagttgcc
     7681 cagcattggt ccttagattc agatacggga tttgaagtcg gatttatctc gtctgttaca
     7741 gaaccattct gtggtgattg caatcgagcc aggctttcag caaacggtca tatctacaca
     7801 tgcctctttg caacatcagg acacgatctc cgccccgtct tacggaatcc cgaggggcta
     7861 gagacg
//
LOCUS       DUKB01000193            5915 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_49721, whole genome shotgun sequence.
ACCESSION   DUKB01000193 DUKB01000000
VERSION     DUKB01000193.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5915)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5915)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5915
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_49721"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..882
                     /locus_tag="HA345_06565"
     CDS             <1..882
                     /locus_tag="HA345_06565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85056.1"
                     /translation="PMDFDAEGNAPAVLTYSPGMEETTGTCNVELSPYVYFVPEAGSG
                     LSTLLLILPVFSAAIAMFLMRGAWKRLRDEEGRENEANEARSLYIGFTGKVTIKGMAV
                     ISIIATTVMFGRFNLADMSSIENTEQLVIYLYCLYAFLFSILLTGMFEGFMFTYAILK
                     NDILGIDEKLRKAFSAAIFAGIGGISLLLATEMMEGLIPGGGLVGGVIIGAPLVVLRK
                     PIFVAINNFSSMLMPEAFTKTELSYIEAYEIAMEDRIITDEERKFLKLQAKTLGLDDE
                     RVKYIESWYDENLEEEE"
     gene            complement(891..4256)
                     /gene="carB"
                     /locus_tag="HA345_06570"
     CDS             complement(891..4256)
                     /gene="carB"
                     /locus_tag="HA345_06570"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014585846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HIH85057.1"
                     /translation="MPKRTDIHRILLLGSGPIRIGQAAEFDFSGSQACRALRAEGYEV
                     ILVNSNPATIQNDPSMADRIYIEPLLPDVVRRILEIEKPDALLAGMGGQTALNIASTL
                     AHDGSLEALGVELIGCELDAIDDAEDRDRFKRVCEEIGLPVPRAIACASIDEVLTAAE
                     EIGGFPLLIRPAFTLGGLGGGTAWDRGQLVEIASQGILHSRIDQVLIEESILGWQEHE
                     YEVMRDAADNCIIVCTMENIDPMGVHTGESTVVAPQQTLSDRDHQMLRDAALRLIRRL
                     DIKGGCNVQFAFNQETGEYRTIEVNPRVSRSSALASKATGYPIARMGALIAVGYTLDE
                     LPNPITGKGTTAAFEPTLDYCVVKIPRWPFDKFRTADRTLGTSMKSTGEVMAIGRTFE
                     EAFLKAVASLEMGAPHPRPLTLADESEGEGQIERAATPLPDETLENWLRVPTDRRMLA
                     LIEAFRRGWGIERVREISGGITRWFLHRFSSIAATEMEVMAHGGSPSDIEGDDLQRWK
                     GAGMTDAHIADTLAGFPASGVRELDHDHGPLGVMERRHELGIHPVYRMVDSCAAEFAA
                     VTPYYYSTYEGGSAPPGIDTVPHERRSREDGSEASRHVVIGSGPIRIGQGIEFDYGCV
                     HAVQAIRDEGHEAILINNNPETVSTDFDTSDRLYFDPLNLECVVEVLLRENADGLLLQ
                     FGGQTAINLALPMHERLSHLRTMGISTQLIGTSPDAVDEASDRERFEKFAKKHGLRMP
                     VGLTGATSQEVRNAVVEIGYPVLIRPSYVLGGRGMEILSDDNQLDAYMSEAYITPDKP
                     LLVDQYLGGAMELDVDSVCDGESVLIGAVMEHLEEAGIHSGDSTCFIPTQNVSENILK
                     QVKEWTETIGVGLGIRGCFNIQFAIKGEVLYVLEVNPRGSRTFPFVAKSTGVPLARIA
                     ALLALGAKLSEVEIPRLETNLVCVKAPVFPFIKLRGLDPAPGPEMKSTGEVMGSHEVA
                     AAAYLKARMATEVPVPTSGGVYITVRDSDKENVITHATRLQEMGFTLHATPGTAQVLR
                     DQGGLEVNTAYRIAERKSPDALDLMRQGDIQLILNTPSKSGGAILDGNMMRRLAVELN
                     IPFVTTLSGARMEVEAIGVAKEGMPEPRRLIGT"
     gene            complement(4256..5614)
                     /gene="carA"
                     /locus_tag="HA345_06575"
     CDS             complement(4256..5614)
                     /gene="carA"
                     /locus_tag="HA345_06575"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: protein motif:HMM:NF009475.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HIH85058.1"
                     /translation="MSKGESEVGFRPGRGIPGVSESFVGEDAADCLVLGTEHGHSSAS
                     GIGVLLLADGGRYEGVLFGADTVAGGELVFTTGMTGFQESLTDPSFAGQVLTFTWPLL
                     GNYGVIPGVSESSRVWPRGVVCRQAIETPDHRDAVGSVHDLLVAHGVPGIQGVDTRSI
                     TRRVREYGTLLCAFGPIEMEDALLARLNASKSPDLDDLVDEVSRDDAVILNPGATNNS
                     GDRLPRLIAIDCGVKYNILRELCRRFEVIWVPADSSFEILVQDHQPDAFFCSNGPGDP
                     AHPGAATSARRVIASAIDAGYPTMGICLGHQLLGLAAGLRTYKLLYGHRGANQPVVDL
                     SDGTVSITSQNHGFAVADPEQGMLAPHPTGACSDAAPNAIGTDVEVRYVNANDRTVEG
                     LDVIGRPAFSIQYHPEACPGPHDASPLFDRFSSIVANHLGSPAPGDLPPVATPSLLGG
                     EN"
     gene            complement(5686..>5915)
                     /locus_tag="HA345_06580"
     CDS             complement(5686..>5915)
                     /locus_tag="HA345_06580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014406316.1"
                     /note="catalyzes the S-adenosyl-methionine-dependent
                     2'-O-ribose methylation of C56 in tRNA transcripts;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (cytidine(56)-2'-O)-methyltransferase"
                     /protein_id="HIH85059.1"
                     /translation="IVVGGAKVPGEVYGICQYNVGIGNQPHSEVAALAVFLRDLLPTG
                     SSPFEFLGGEIDIVPSVSNKHVNQVGTNEDE"
BASE COUNT         1540 a         1570 c         1423 g         1382 t
ORIGIN      
        1 cccatggact tcgatgccga ggggaacgct cccgctgttc tgacatactc tccggggatg
       61 gaagagacaa ccgggacctg taatgttgaa ctttcacctt acgtctactt cgtacctgag
      121 gcaggttcag gtctaagcac ccttctcctc atcctcccgg tattctctgc ggcgatagct
      181 atgttcctga tgcgtggtgc atggaagcgt ctccgagatg aagaaggtcg tgaaaatgag
      241 gcaaatgaag cgagatctct gtacatcgga ttcacaggta aagtgacaat caaagggatg
      301 gctgtaatct caattatcgc aaccaccgta atgtttggtc gattcaatct tgcagacatg
      361 agttcaatcg aaaacactga acaacttgta atctatctct attgcctata cgccttcctg
      421 tttagtattc tactgacagg gatgtttgaa ggattcatgt tcacatatgc tatcctcaag
      481 aatgatattc tcggaattga tgagaaactc agaaaggcgt tcagtgccgc aatctttgct
      541 ggtattggag gcatttcact tctacttgct accgagatga tggagggatt aatccccgga
      601 ggagggctgg tgggcggcgt catcattggc gccccgctgg tggtgcttcg aaaaccaatc
      661 ttcgtcgcaa taaacaactt ctcatcgatg ctaatgccgg aggccttcac aaagaccgaa
      721 ctatcctaca tagaggcata tgagattgct atggaagatc gcattatcac cgatgaggag
      781 cgaaaattcc tgaaactaca ggcgaagacg ctaggccttg atgatgaacg tgtaaaatac
      841 atcgagagtt ggtatgacga gaacctcgaa gaggaagagt gatgatacac tcaggtacca
      901 attaggcgcc tcggttcagg cattccttct ttcgctaccc cgattgcttc gacttccatc
      961 cttgcaccgc tgagtgtggt gacgaatgga atgttgagtt cgaccgcgag acgccgcatc
     1021 atgttaccat cgaggattgc tccgcctgac ttcgatggag tattgaggat tagttggata
     1081 tcaccctgtc tcatgagatc caatgcatcc ggactcttcc tctcagcgat acgatacgca
     1141 gtattgactt caaggccgcc ttggtcacga agaacctggg cagtccccgg agtagcatgg
     1201 agcgtgaaac ccatttcctg caaacgagta gcgtgagtaa ttacgttctc cttatccgaa
     1261 tcacgaacgg tgatgtacac tcctcctgat gttggaactg ggacttcggt ggccatccta
     1321 gccttgaggt aggctgccgc tgcaacctca tgcgacccca tcacctcacc agtggacttc
     1381 atctctggcc ctggagccgg atcaaggccc cggagcttga tgaacgggaa tacaggagcc
     1441 ttaacacaaa cgaggttagt ttccaaacga gggatttcaa cctcagataa ctttgcacct
     1501 agagccagaa gtgcggctat gcgtgcgaga gggacgccag tcgacttagc gacaaacggg
     1561 aaggtacggc ttccacgtgg attgacttcg agaacataga gcacctcgcc cttaatggcg
     1621 aactggatat tgaagcaacc acgaattcca aggccaactc caattgtctc agtccactcc
     1681 tttacctgct tgaggatatt ctcagataca ttctgtgtag ggatgaagca agtggaatca
     1741 ccagaatgaa tccctgcttc ctcaagatgc tccatcacag caccgatgag gactgattcg
     1801 ccatcgcaga cagaatctac atcgagttcc atggccccac caagatattg gtcaactagc
     1861 aacggcttat cgggagtaat atacgcctca gacatgtaag cgtcgagttg attatcatcg
     1921 gacagaatct ccataccacg accacctagg acgtaagaag ggcgaatcaa cacaggatag
     1981 ccaatctcta caactgcatt acggacttct tgggaggtag ccccagtgag tcctactggc
     2041 atcctcaatc cgtgcttttt cgcgaacttc tcaaacctct cgcgatcact cgcttcatca
     2101 accgcatctg gagatgtccc gatgagctga gtagaaatcc ccattgtgcg taaatgcgag
     2161 aggcgttcgt gcataggtag ggcgaggttg attgcagtct ggcctccaaa ctgtagaagg
     2221 agaccatcgg cattctcacg tagaagtact tctacgacgc attcaagatt caaaggatcg
     2281 aagtaaagac gatctgaagt atcgaaatct gtcgataccg tctcaggatt attattgatt
     2341 aaaatcgctt catgtccttc atcacggatt gcttgaactg cgtgtacaca tccataatcg
     2401 aactcaatcc cctgaccaat acggattgga cctgacccga ttaccacatg acgagaagcc
     2461 tcggatccat cttcgcgtga acgacgctcg tgaggtactg tatcgattcc cggaggagca
     2521 ctccctcctt cgtaggtcga atagtagtac ggcgtcaccg ctgcgaactc cgcagcacaa
     2581 gaatcaacca tacgatatac aggatgaatg ccaagttcgt gacgacgctc catcactcca
     2641 agaggaccgt gatcatgatc gagttcccta acaccagatg ccggaaagcc tgctaaggta
     2701 tctgcaatat gagcatcagt catacctgca cccttccaac gttgaagatc atccccctca
     2761 atatcagagg gtgaacctcc gtgcgccata acctccatct cagtagccgc tatggatgag
     2821 aaacgatgga ggaaccaccg agtaattcca ccactaatct cacggacgcg ctcaattccc
     2881 cagcctctcc taaaagcctc aattaatgct aacattcgac gatctgttgg cacacgtaac
     2941 caattctcaa gtgtctcatc aggaagcgga gtcgctgccc tctcgatttg tccttcgcct
     3001 tcagattcat cagccaaggt tagtggccga ggatgaggtg cacccatctc caatgaggca
     3061 acggctttca agaaggcctc ttcgaacgtc cgaccaattg ccatcacctc accagtactc
     3121 ttcatcgaag tccccagggt ccggtcagcg gtgcggaact tatcgaacgg ccaacgtgga
     3181 atcttcacta cacagtaatc gagagttggc tcaaaggctg cagtagttcc tttcccagta
     3241 atcggattgg ggagttcatc gagagtgtaa ccaacagcaa tgagcgcacc catgcgggct
     3301 atggggtatc cggtagcctt cgatgcaagc gcagaagagc gacttacccg gggattcacc
     3361 tcgattgtcc gatactctcc ggtttcttgg ttgaatgcga actgtacatt gcaccctccc
     3421 ttgatatcta aacggcgaat gagtcggagg gctgcgtctc taagcatctg atggtcacga
     3481 tcggagagag tctgttgagg tgcaacgaca gttgattcac ctgtatgaac gcccatagga
     3541 tcgatattct ccattgtgca gacaatgatg cagttgtcag cagcgtcccg cataacctca
     3601 tactcgtgct cctgccagcc aaggatgctc tcctcaatca gaacctgatc gattcgacta
     3661 tgcaagattc cttgactcgc aatctcaaca agttggccac ggtcccatgc tgtgccccct
     3721 cccaaaccac caagtgtgaa agcaggacga atgagaagtg ggaaaccacc aatctcttcg
     3781 gcggctgtaa ggacctcatc gattgatgca caagcgattg ctctcggaac tggaaggccg
     3841 atttcttcgc atacccgctt gaatcggtcc ctatcttctg catcgtcaat ggcatcgagt
     3901 tcacaaccta tcagttcaac gccaagcgcc tcaagtgaac cgtcgtgagc gagagtagag
     3961 gcgatgttca aagcagtctg accacccatc cccgcaagta gagcatctgg cttctcgatc
     4021 tctagaattc gacggacaac atctggtaga aggggttcga tgtagattcg atcagccatc
     4081 gaggggtcat tctgaattgt cgcaggatta ctgttgacaa gtatgacttc gtatccctct
     4141 gcgcgtaagg cacgacaggc ttgagaacct gagaaatcga actcagcagc ctgtccgatc
     4201 cgaattgggc cgcttcccaa gagaagaatt cgatgtatgt cagttcgctt cggcatcagt
     4261 tctcaccgcc taatagagac ggtgttgcca caggtggtag atctccaggt gcaggtgaac
     4321 caagatgatt agcaacaatt gaggagaatc gatcaaagag cgggctcgca tcgtgagggc
     4381 ctgggcaagc ttcagggtga tactgaatgg agaatgcggg tcttccaatg acgtcaagtc
     4441 cttcgacggt tcggtcatta gcattcacat agcgaacttc gacgtcagtt ccgatagcat
     4501 ttggtgccgc atcagagcag gcgcctgtag ggtgtggtgc caacataccc tgctcaggat
     4561 ctgcaacagc aaatccgtga ttctgagagg tgatacttac cgtaccatcc gagaggtcga
     4621 ccaccggctg attggctcca cgatggccgt aaagtagctt gtaagtccga aggcccgcag
     4681 ctagccctag caactggtga ccaagacaaa tccccatcgt agggtatcct gcatcgattg
     4741 cagatgcaat tactctccta gctgaagttg ctgcaccagg atgagcgggg tcacctggac
     4801 cgttagaaca gaagaatgca tcaggctgat ggtcctgaac caatatctcg aaagacgaat
     4861 cagcaggcac ccatatgacc tcaaatcttc gacatagttc acgtaggata ttgtatttca
     4921 caccacaatc gatagcgatt agcctcggga ggcgatctcc agaattgttg gtagctccgg
     4981 gatttagtat gactgcatcg tccctcgaca cctcatcgac gaggtcgtca agatcaggac
     5041 tctttgaagc attgagcctt gctaaaagag catcttccat ctcaattggc ccaaatgcgc
     5101 aaagcagtgt cccatattct ctgactcggc gagtgattga acgagtgtcg accccttgaa
     5161 ttcccgggac cccatgcgcc acaaggagat cgtgtactga acctactgcg tcgcgatgat
     5221 caggtgtttc aatggcttgt ctacagacaa ccccacgagg ccatactcgg ctggattccg
     5281 acacacctgg gattacacca tagttgccaa gaagtggcca agtgaatgtt agtacctgac
     5341 ccgcaaacga tgggtcagtt agagactcct gaaaccctgt cattccagta gtaaagacca
     5401 actctcctcc cgcaacagta tctgcaccaa ataggacccc ctcataacgg ccgccgtcag
     5461 cgagtaatag caccccaatg cctgaggcgg atgaatgtcc atgttcggtc ccaagaacga
     5521 ggcaatccgc tgcatcctct cccacaaagg actcagatac cccgggaata ccccggccgg
     5581 gacggaaacc aacctcggat tcgccctttg acatcagttc atttcgctat gaccgctcct
     5641 taattattgg cggtaaaaga ggggttacaa ccaactcaga ggattttatt catcttcgtt
     5701 ggttccaacc tgattcacat gcttgttaga gacactaggg acgatatcga tctcccctcc
     5761 aagaaactca aaaggagaag atccagtggg taaaagatct cgtagaaata ctgcaagagc
     5821 agccacttca gaatgtggtt ggttaccaat gcctacgttg tattgacaga tcccgtacac
     5881 ctcgcctgga actttcgccc cacctaccac gatag
//
LOCUS       DUKB01000194            6102 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_101621, whole genome shotgun sequence.
ACCESSION   DUKB01000194 DUKB01000000
VERSION     DUKB01000194.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6102)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6102)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6102
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_101621"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(91..1152)
                     /locus_tag="HA345_06585"
     CDS             complement(91..1152)
                     /locus_tag="HA345_06585"
                     /inference="COORDINATES: protein motif:HMM:NF012515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85060.1"
                     /translation="MRAMDEFDIAHLNRLKRVRTLMDAKPPTHITLVGDVMLDRFIFG
                     EIDTLASTAPVPALRVTNREDSPGAAAHIARSLSGFGVDSRFHSAVGDDTVGRRLIDT
                     LQSYGITTENILLSSSTTTLIKTRYFGGRSGMMDKRQMILQADMGGKSRLDDESYNQL
                     LDNSRKDLSGSGILILSDYDNGVITGENAQVLLKEAKEAGITTIMDPKLSGLGRAIGA
                     DVAIFERRGIELIQRRQLLVDEAETIAHLFDKYQWKAMLVIGGVHGTTLHLSDGTVEH
                     HACRVLNPKQQLGLHDAAATALSYALLCGSDLGDAACLAHAACEVILNADASREFVSK
                     EVLTVWLDEVLWQFQISNR"
     gene            complement(1185..2069)
                     /locus_tag="HA345_06590"
     CDS             complement(1185..2069)
                     /locus_tag="HA345_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85061.1"
                     /translation="MGGQNQLTVRERILLHLHNRRLDSEGMDAPLHDSQIGVAQGIGV
                     YRRHIPRTVRKMQEDGEIDIVLRHVQGISRKVQCYSLTNYGDTKASEIWKQVKEWDIE
                     SDSETVPFHTIALTPVDALQFLYPTDANPGDTPSIHRMVRIIRTALEDGIITDDEDRL
                     IRSIASELHIDSSSLQQIIDRISDEANASDPRIRLIRAAMIAAISDGVIDSSEERLLR
                     GMAKDCGITEDAYSSLLERIISESLSPEERAYSGAMDALEWSTTNHMDIIMDLRDALG
                     IDEDQHRRLSGLSRAKLN"
     gene            2161..3138
                     /locus_tag="HA345_06595"
     CDS             2161..3138
                     /locus_tag="HA345_06595"
                     /inference="COORDINATES: protein motif:HMM:NF014076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85062.1"
                     /translation="MEARDDIVVMTEPQWQRLWEKSAIGRRLKDGGLHLLPEEVIFCH
                     HHRHQPLPTDDWVQQNLNLDSSLEARFLILEALRVPGNLIILTEHEHSSQWDTELESW
                     ALRWHKENHPDSAEPTAEIRWHHSSDAVDWAELLFWTSAVINKHRIPEVLVIDDEGSI
                     VTYELSICQPQGNLSFNIDAFGEYVLEEKENRYGIDEWSMTHVGIPTRWGHRLNPSET
                     SLLDSNTKSSTNSVHLDLLSRGLALRSGFKYGTHWRGYSGPVGKDHAPYLIDTPENAP
                     KTWAKACLSARLAAGVNKNLLIAIEGEEIQYLQIDRPPSVRRWTNLHRR"
     gene            complement(3140..5185)
                     /locus_tag="HA345_06600"
     CDS             complement(3140..5185)
                     /locus_tag="HA345_06600"
                     /inference="COORDINATES: protein motif:HMM:NF017368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85063.1"
                     /translation="MTMRTIRVIFATLILLSAGFVHMNQEVIESMLQDVVTPEEESDD
                     STLVGLQNEEYWLVVIIEFPQLPTGPGKDAERIDTILTGVDGADDYIAEMSGGVSSLS
                     VTIVNTTYSADSAPSAWGTDTDGSRDIASDGARPSDLAQEAAIDSLTGLDLSPYDLDS
                     DGVVDRLLFIHTGRAQEVSGRTSDIWSHFQRFTEPITIGEHQIHHYTMASFQSGLGTI
                     LHEMLHQMGALDLYDVHDETSNSDWNGVGDWDIMASGNWNGNGRVPALPMAATLDLIG
                     VDRTIALNPTMGVMNVNLTAMSGGGRAVTLQISPNEFVYVENRGNYGFDRNLPGHGLL
                     VSIRDDYGKDLDRNEVNTDPDTAYLRLVEADGDDALLRGIDSGSFSDPFGLSTTFGNE
                     GVLIHDRHGRLVDWNITVQSASTDGIEIIYQPGMIRTHDILPPRSPIELLASESIPIT
                     VEQGCNLSADLYSTDGRDVILETNPTRIEWSAQSISGTKGYIRGTMACDNSIFQVDMD
                     WRIVPHRIADASFEQIIPHDDSTTIVIPLEYDGDGQRSYDVSAEGPLERIVAGPSTVD
                     LSSNEALELVIDPKGLLTPNMYAEGTLHLTSDGGDIVTIEIILYTSSNKFQGIGPIDS
                     QADLVTILLFLMALSVLPSRKQPNRLQTKVEQQTPTPQVTDSQLIQYDDLDDPQYPF"
     gene            complement(5222..>6102)
                     /locus_tag="HA345_06605"
     CDS             complement(5222..>6102)
                     /locus_tag="HA345_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85064.1"
                     /translation="ASVFTILFLWIGLPTFWLFIGPFILIELDSINSVSGMTNQYDVS
                     VIFEILLGISWAFLSTILGIMTRIAISMTHHKDHDNRMSLDARTLLFTAFLLYLSLSG
                     PLTGLWLPWMVVTIILMESMTVGITSSRIEVKQPRSILDADGDVHRITVLDCSCEGAC
                     PKLPVTPRGCGLLRTEALCLDNHEADRLLEALHLHQTTRLIVTGCDGSPMPFHIQSSL
                     ASQDVEVIGLSWLDQRGYHPEDLAMGDMYRKHTLMEYSMRQQMSFDTDSVLDPGWGRY
                     IPRGVIALPVSHDERP"
BASE COUNT         1720 a         1409 c         1312 g         1661 t
ORIGIN      
        1 gcatgttcaa ttgtttcagg ccaacttaca gtgtcttcga tacgaagccc catgtcagca
       61 gtagtctcga tgatagacca aggcacatga tcaccggttg ctgatttgga actgccaaag
      121 gacctcatcc agccagaccg tcaaaacttc cttagagacg aattcacgac tagcatcagc
      181 attgaggatg acttcacatg ctgcatgtgc gagacaagca gcatctccta agtcggaacc
      241 acagagaagt gcataggata gggcagtagc agccgcatca tgaagaccaa gttgttgttt
      301 aggattcaaa actctacatg catggtgttc cactgttcca tctgaaagat gcagagttgt
      361 accatggaca cccccaatga caagcatagc tttccattgg tatttatcga aaaggtgggc
      421 aatcgtttct gcttcatcaa caaggagttg gcgacgctga attagttcga ttcctcgccg
      481 ctcaaatata gcaacatcag cacctatggc cctacctaaa ccactgagtt taggatccat
      541 aatagtcgta atacctgctt ccttagcttc tttgagtaat acctgcgcat tctcgcctgt
      601 gattactcca ttgtcataat cagataaaat cagaattccc gaaccgctca aatcctttct
      661 ggagttatcc aataactgat tgtaggattc gtcatcgagt cgagattttc cacccatgtc
      721 agcctgtaat atcatctgtc gcttatccat catccccgaa cgaccaccga agtatcgagt
      781 cttgatcaga gtggtagtgc ttgaactgag aagaatattt tcagttgtga ttccatacga
      841 ttggagggta tcgattaatc gacgccctac ggtatcatcg cccacagcag aatgaaatcg
      901 actgtcgaca ccaaatccag aaagtgaacg ggcgatatgg gctgcagcac caggagaatc
      961 ttctctatta gtcacacgaa gtgctggaac aggagctgtg gaggctaatg tgtcaatctc
     1021 tccgaatatg aagcgatcca acatcacatc ccctacgaga gtgatgtgtg tagggggctt
     1081 cgcatccatt agagtacgaa cacgcttgag gcgattcaga tgggcaatgt cgaactcatc
     1141 catggcgcgc atgctcttcc ctcgttccta gggacgaggg gttgctaatt caacttcgcc
     1201 cgactcagcc cgctcagcct acggtgttga tcctcatcga tacccaatgc atctcttaga
     1261 tccatgataa tgtccatgtg attcgtagta gaccattcta atgcatccat agcacctgaa
     1321 tatgccctct cttcaggtga caaagattcg ctaataatac gttcaagaag tgaagaatat
     1381 gcgtcttctg taattccaca atcctttgcc atacccctga gtaatcgttc ttcactagaa
     1441 tcaatgacac catctgaaat ggctgctatc atagctgcac gaattaaacg gatgcgagga
     1501 tctgatgcat tagcctcatc tgaaatacga tcaatgattt gttgcaggga actagaatcg
     1561 atatgcaatt ctgatgcaat acttctgatt aagcggtcct catcatctgt gattatacca
     1621 tcttctaatg ctgttctgat tatacgtacc atgcgatgta tcgaaggagt atcgcctggg
     1681 ttagcatctg ttggatagag gaattgtaga gcatccactg gtgtcagcgc gatggtgtgg
     1741 aaagggacag tttcagaatc ggattcaata tcccattcct tgacttgttt ccagatttct
     1801 gaagccttag tatctccata gttcgttaac gagtaacatt ggacctttct tgatattcct
     1861 tggacatggc gaaggacgat gtcgatctca ccatcctcct gcatttttcg tactgttcga
     1921 gggatatgtc ggcgatatac accgatacct tgagcaacac cgatttgtga atcgtgaagc
     1981 ggagcatcca taccttcaga atctaaacgt cgattatgga gatggagaag gattcgctcc
     2041 ctcactgtca attggttttg accacccatc tatttgccac tatcaatggg atggtttgaa
     2101 tcattggcct taatgcatcc aaaccgcatg gatgatgatg tatgaccgat tcgaccacat
     2161 gtggaagcac gagatgacat agtcgtaatg acggaacctc agtggcaacg cctctgggaa
     2221 aaatccgcca taggtcgacg tctcaaagat ggaggtttac atcttctccc tgaggaagtc
     2281 atcttttgcc atcatcatcg acatcaacct ctacctaccg atgattgggt ccaacaaaat
     2341 ctcaatcttg attctagtct tgaggcacgt tttctcattc ttgaggcatt gagagtccct
     2401 gggaatctaa tcatcctaac cgagcatgag cattcatcac aatgggatac ggagttagaa
     2461 agctgggcgt tgaggtggca caaagaaaac catccagata gtgctgagcc tactgctgag
     2521 attcgatggc atcactcctc agatgcagta gattgggctg aacttctttt ctggacatct
     2581 gctgttatca ataagcatcg tattcctgaa gtattggtta tcgatgatga aggttctatt
     2641 gttacatacg aactttcgat ttgtcaacca caaggtaatc tctctttcaa tatcgatgca
     2701 tttggcgagt atgtacttga agaaaaagag aaccgatatg gcattgatga atggtctatg
     2761 actcatgttg gaatcccaac aagatggggt catcgtctca acccatcaga aacatctcta
     2821 cttgactcga atacaaaatc cagcacgaat tctgtccatc ttgatctctt atctagaggt
     2881 cttgctcttc gctccggatt caagtatggc actcactgga gggggtattc aggaccggtt
     2941 ggtaaggacc atgcaccata cctaattgat acccccgaga atgcaccaaa aacatgggct
     3001 aaagcctgtc tttccgcaag actcgcagcg ggtgtgaata agaatcttct aatcgctatt
     3061 gagggagaag aaatacaata cttgcaaatt gatcgtccac ctagtgttcg aagatggacc
     3121 aatcttcatc ggagataaat cagaacggat attgtggatc atccaagtca tcatattgga
     3181 ttaactgtga atcagtaact tgaggagtgg gtgtttgctg ttccaccttg gtttgcaaac
     3241 gattaggttg cttccgacta gggagtaccg agagagccat aaggaacagc aatattgtga
     3301 ctaaatctgc ttgagaatca atgggaccta ttccctggaa cttgtttgaa gatgtgtaaa
     3361 ggatgatctc tattgtgaca atatcacctc catctgatgt aaggtgcaat gttccttcag
     3421 catacatatt aggagtgagt aggcccttcg gatcaattac caattccagt gcttcattgg
     3481 atgaaagatc gactgtcgaa ggtccagcaa cgattcgttc aagggggccc tctgcagaaa
     3541 catcgtagga ccgttgcccg tcaccatcgt attccagtgg gatgacgata gttgttgaat
     3601 catcatgagg gataatctgt tcaaatgatg catctgcaat cctgtgagga acaatcctcc
     3661 aatccatgtc cacttggaag attgaattat cacatgccat agttccgcga atatacccct
     3721 tagttcctga aattgattgt gcgctccact caattcgtgt aggattagtt tcaaggatta
     3781 catctcggcc atcagtacta tacaaatcag ctgagagatt gcaaccttgt tcaacagtaa
     3841 ttggaattga ttcagatgca agaagttcaa tcggactccg aggtggaaga atatcatgag
     3901 tacgtatcat acccggttgg tagattatct ctattccatc agtagacgcc gactgtacag
     3961 tgatgttcca atcaacaaga cggccatgtc gatcatggat tagaacccct tcatttccaa
     4021 aggtagtcga tagaccaaat ggatcactga aagatccaga atctatacct cgaagtaacg
     4081 catcatcgcc atcagcttca acgagtcgaa gataggcggt atctggatct gtattcactt
     4141 cattacggtc cagatctttt ccataatcat ctcgaattga gacaagtagg ccatgccctg
     4201 gtaaattcct atcaaaacca taattacctc gattctcgac ataaacaaat tcatttggtg
     4261 aaatttgtaa ggttactgca cgaccaccac ccgacatagc tgtcaggttg acattcataa
     4321 cgcccatcgt tggattcaaa gcgatagttc gatccacacc aatgaggtcc aaagttgcag
     4381 ccattggtaa tgcagggaca cgaccattac cattccaatt gccgctggcc atgatatccc
     4441 aatcacctac gccgttccaa tcgctattcg atgtctcgtc atgaacatca tagagatcga
     4501 gagcgcccat ctgatgaagc atctcatgga gtattgttcc tagtcctgat tggaaactcg
     4561 ccatcgtata gtgatgaatt tgatgctcac cgatcgtgat tggttctgtg aatctctgaa
     4621 aatgactcca gatatctgat gtacgtccac ttacttcctg agctcgaccc gtatgaataa
     4681 agagaagtct atcgacgaca ccatctgaat caaggtcgta aggcgataaa tcgagacctg
     4741 ttagagaatc aatcgcagcc tcttgtgcta aatctgatgg tctagcccca tcggatgcta
     4801 tatctctaga accatctgta tctgtgcccc atgcagaggg tgcagaatca gctgagtaag
     4861 ttgtgttgac tatagttaca ctcaatgatg aaactccacc actcatctca gcaatgtaat
     4921 catctgctcc atcaactcca gtaagtattg tatctattct ctcagcatct tttccagggc
     4981 cagtaggcag ttgggggaat tctatgatta ctacaagcca atactcctca ttttgtaatc
     5041 caacaagtgt tgaatcatcg gattcttcct ctggcgtgac gacgtcttgc aacattgatt
     5101 caatgacttc ttgattcatg tgaacaaagc cagcagagag aaggattagg gtggcaaaga
     5161 tgacccgaat cgtccgcatt gtcattcgat gggttgccct ttgactatca aacccactcg
     5221 gtcacggacg ttcatcatgg gatactggca gagcaataac gcctcgaggg atataacgac
     5281 cccatcctgg atccaaaaca gaatcagtat cgaaactcat ttgttgcctc attgaatatt
     5341 ccatcaatgt gtgttttcga tacatatctc ccattgctag atcctcggga tgatatcccc
     5401 tttgatctaa ccaagatagt ccgattactt cgacatcttg tgaagctaaa gacgattgaa
     5461 tatggaatgg cattggtgag ccgtcacatc cagtgacgat cagtcgtgtt gtctggtgga
     5521 gatgaagggc ctcgagaagt cggtctgctt catgattatc tagacacaat gcctcagtgc
     5581 gcagcaaacc acaccctcga ggtgtaaccg gcaacttcgg acaagcacct tcacaggagc
     5641 aatccaacac tgtgatgcga tggacatctc catcagcatc caaaatgctc cttggttgct
     5701 tcacttctat tcttgaactt gtaatcccta ccgtcataga ttccattaga ataattgtga
     5761 cgaccatcca aggtaaccac aaaccagtca atggtccact aagagagagg tagagaagga
     5821 acgctgtgaa tagcagtgtc cttgcatcga gtgacatcct gttgtcgtga tccttgtgat
     5881 gagtcattga aattgcgatt cgagtcatga ttcctaggat cgtactaaga aatgcccaag
     5941 aaattccaag taatatctca aagataactg atacatcata ctgatttgtc atcccactaa
     6001 cagaattgat tgaatctaat tcgataagaa tgaaagggcc gatgaaaagc cagaatgtag
     6061 gtaatccaat ccaaaggaag agaatggtaa acactgatgc tg
//
LOCUS       DUKB01000195           11832 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_111694, whole genome shotgun sequence.
ACCESSION   DUKB01000195 DUKB01000000
VERSION     DUKB01000195.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 11832)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 11832)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11832
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_111694"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="HA345_06610"
     CDS             <1..320
                     /locus_tag="HA345_06610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85065.1"
                     /translation="NPLEDGLEIVDLVVEIHILQAIPIEIREEAAKVLPTLLKRKGRL
                     ISIGREATNRTKEEISLPWPLSRRWLMERFSSLEVVIFQPIVLEDWPDIDRYVGVWQR
                     TSQ"
     gene            complement(314..1210)
                     /locus_tag="HA345_06615"
     CDS             complement(314..1210)
                     /locus_tag="HA345_06615"
                     /inference="COORDINATES: protein motif:HMM:NF013045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HIH85066.1"
                     /translation="MSRIDVQVEADSDLLSVLQSVHDNATSNRLRRMIDDGRVHIDEK
                     VCRVARTPVIVGQKVSILPRAQGDAPKRQSRSSLELPKILYEDDRLLVADKPAGLLSV
                     TTSKGKEKDTMHARAFEYAAIEGGRVFIVHRLDRETSGCMLFAKDERTKRYLQEQFAD
                     RSIQRIYHAILLGYLPEDTGLARDWIQESKDLRVRIAPHRNATNAKEAITYWRVEDTS
                     ETHSLVRLDIRTGRRAQIRLQMAARNAPVVGDTMHGQGRAKTGRLCLHASSLSFNHPN
                     GETLQVKSQIPDIFRRVMKRGH"
     gene            complement(1212..4697)
                     /locus_tag="HA345_06620"
     CDS             complement(1212..4697)
                     /locus_tag="HA345_06620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85067.1"
                     /translation="MSLETYLRDCIEAGRRAGDDPNSRSRQLVSHPSFTLLDRAWKPV
                     AMAIVQKEEPRNPDQEVQVKATRRRGVRRRGARGASGIEAFLEPVDTIRISQESPAYR
                     LAVLLIHKGRDPKSWKAEDNSLIDELRSTCNSGVHPVWAQAARECPLIAMLGAFPSTT
                     PPTKETKESLDWIGGLRRDPSNFEEFGKWLENVEHSELDSKSVLDLQRLAKGLQGRIR
                     PTQIRKDAPKILSTTSNPPLILIDALLHIASNQPHLAVERIDGSDFKGKEIQSISNDL
                     YHLARLQSGDFDAWKSCACATGNDALSSAMLTAAWTNPIEQDLDLSTIESGIFHLEKN
                     NLPIPDSLQWMFIRALAAKGDIEEATKLIMDAKIEDSASFLAASRMAKGHEALAERLC
                     ELAINYDTNTWEGIIAEDEIPTQIRVCCATHLSRFQLSSSTLEQVIEILVKGNDIESL
                     ALVICKNELQGSENPYPILLASSLAPANLAPENISWIQEQAIMAHDIVESTEPPSYLS
                     INEAALIRLLDGASANLEEIQGRLTESGSEVLREARRALMDGGDGLVREQRVDTLESA
                     IDESNLPELERTLFLAIVDLLRMNRVNNDVQMTDSDRKERAYTILDTLISNRFNARFL
                     PLVTDLIMEHEVPSSALVSWLQNHRPRSEWTPVANAAISVREGQHLDAARLYKQAAPR
                     FQNPPHGDFERATLLYRKALINFALSNRWSEAADLLDEHTELAATITSRFQLYLKVSY
                     AFDKMPKSGSRSKRSRNHPKHMILDFADSRLPSVEANTPDDDGSKRRERERRKEDIIE
                     SLMAYPSSRRLPEEPFIGRVRAALNHIQRVTSSRRYHIETRFRNALNDFARPIEVYNI
                     ANEVASEDPLRALRMMEHAINVSSHYNGREQLALKASMDAMYQQYEGQIAVKERRGFN
                     SLALPPLIVIDTNLLLDGLASEILRRMTVDRNGLINPNSSLMFHQILRHRANTNLVRT
                     FVPSTALNEFRSRIMNTDTGEYDPQRALSLIYNVRRHINIDAYHAIITPKVLEEIHLS
                     ILEEFRDWPAPTEEGFHESVLAQTKAVENFLQAHHSIYEQVTIFKARRGGADKRTALS
                     EDGMTISEEGIYPEPGDLDIMKTASKLASDCLERVGAVVIATRDSDFTLLARALEETL
                     GVGVAKNAIELAQWL"
     gene            4804..5292
                     /locus_tag="HA345_06625"
     CDS             4804..5292
                     /locus_tag="HA345_06625"
                     /inference="COORDINATES: protein motif:HMM:NF015166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85068.1"
                     /translation="MEAVDFVILLLHPLIATVFGIWLYRHWSTIKAIRLKRGGAWSRI
                     RNRNRDDVIAEHERQGRWALPTILGVILFAILANLHRYVNLEVEFNELFSLHGWLGIT
                     LAFLTFYMTRTGKRMVTQREGKSSTAKMKGIHRRAGDLMLALLVAVMFLGFLRAIQII
                     QP"
     gene            complement(5289..6293)
                     /locus_tag="HA345_06630"
     CDS             complement(5289..6293)
                     /locus_tag="HA345_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85069.1"
                     /translation="MTDRISMLQSIEPHRVLTDGDLDGITTAGILLRAFPDLIVGFGH
                     PGGIRAGVFDDQIDSQTIICDLPSHPACGAVIDHHETNRADVEGVLNFWKATPSAARI
                     AFEIVGESQDVSDLQEMIDWVDVLDGGKVSREDFLSNHPMVVLSRSIEASERPEAAQR
                     IVRGIAEGWGIERILADPLVAESIHRREMEASKITKIIHDSLTVVNRIAIVRFDGTGI
                     RTNGYRITAEAGDECDACIVIHGDVKGSLNGPTHPLSASFYTNSFLHSNGGLVDLTRL
                     ATAFDPHGGGHRDACGCRIQPLGDDGLREDREVETEDVNRNIAAWIDKWSNERVRNIG
                     "
     gene            6369..6767
                     /locus_tag="HA345_06635"
     CDS             6369..6767
                     /locus_tag="HA345_06635"
                     /inference="COORDINATES: protein motif:HMM:NF012514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HIH85070.1"
                     /translation="METSCGLVLVNGDLVLLLRYPQGHWGFPKGHVEDTDASPHDTAL
                     RELREETGIDDAKVIGSWSQTTQYTHSRRGVEREKQVHWFPAKTKTFDVVLSHEHTDH
                     MWVEIDEAVDWITFPAEKEVLRGARQILGL"
     gene            complement(6756..7397)
                     /locus_tag="HA345_06640"
     CDS             complement(6756..7397)
                     /locus_tag="HA345_06640"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009538824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HIH85071.1"
                     /translation="MVRITRVHTGGGDGGETSLLTGERVPKSNPRVEMYGTIDELNSL
                     IGWIRMELSRLPKQHSDGGVRVPALRIEEELDPMLSMIQQELFDIGGESAGTPSALPE
                     QMSLVQMKHADRLVQEMDHWTDQQEPLSSFILPSGSPVVVALHVVRTVTRRSERCAVN
                     LLEAEGEGAVRPVVLAYLNRLSDWMFVAARHVNQALAEEEVLWVPLGTRDSES"
     gene            complement(7413..7706)
                     /locus_tag="HA345_06645"
     CDS             complement(7413..7706)
                     /locus_tag="HA345_06645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85072.1"
                     /translation="MNWDISRDSWSHGSILFWILSTWFGANLILQATWMGLYGVPLDA
                     QILFDAFGPYAWWIAGIEVILWLLLFSIAARRFYSKLRNSESRRAHSRAVEPA"
     gene            complement(7765..8487)
                     /locus_tag="HA345_06650"
     CDS             complement(7765..8487)
                     /locus_tag="HA345_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85073.1"
                     /translation="MLLWVLLFVGVAFALFVYARHQPFPEHGFTAGGIFLFVGLVLYI
                     AMGADRATSPIVPPALAIFFGGLFTIIGGRHMARTQRDVIVAPFSGLLLVVGIFGFVT
                     IDWIEQSTAEQIGNFATASLFILLEIYLLFRGLVVGVQGVTWSQSGLRQTQRGLIHGP
                     RGAIAHFERSWDMQDPVLNVMAHAALARIHSKIGDLSESEMHEDRLRRLGGWEVVDTS
                     WIEIIDSSLVSMSQGPENQSEE"
     gene            complement(8513..8848)
                     /locus_tag="HA345_06655"
     CDS             complement(8513..8848)
                     /locus_tag="HA345_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85074.1"
                     /translation="MGWWPFNRRRADSGDDNPHMRGSRMWLIDLQEACEREYQNPAAG
                     KAKVRELQVEWTEAHTRDEISDELLEGLDRRAFRLIRSDPEEWLRWLDDIEFWKPGWR
                     GDEGVPTTD"
     gene            8948..9385
                     /locus_tag="HA345_06660"
     CDS             8948..9385
                     /locus_tag="HA345_06660"
                     /inference="COORDINATES: protein motif:HMM:NF014629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HIH85075.1"
                     /translation="MARIVVHIHGKARDRAYSHLVDMYAERLESKGVRLIRHPSRMDH
                     DDYRKRLLKDSKNGVLILLDENAPSISTKDIVQRWNRWRSGSDTIHLAIGPVDGWKDG
                     FTDEHDTLGLGPLTMTYEMAAVVLLEQLYRASEIERGSSYHRD"
     gene            9855..>11832
                     /locus_tag="HA345_06665"
     CDS             9855..>11832
                     /locus_tag="HA345_06665"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HIH85076.1"
                     /translation="MAKRTTSTMKQASISEFFEKNKHFLGYDTLQRSIITAVKEAVDN
                     SLDACEEHRILPDIAIELRKVPKKNDRIIMVSQDNGPGIPSKSIEKVFGSLLFGSRFH
                     TIRQTRGQQGIGITGVVMYSQLTTGKTTRVTSKITKEATALQMDIGLDTKKNAALVSN
                     RERTHDFLDYNGMPVEHGLKVEAPMKAKFQRGRKSVGQYLRMTSIVNPHATIRYRAID
                     DNGEIIEEFVAERVTDRLPHPVRSIKPHPHGLEIGALNRLLRDPTERRMSLFLRHTFS
                     GVPMRAMKDTLAHAEVDPATSPNKVSPEEAQRILNAFNTVRLMAPPTDCLSPIEDLLI
                     KKGLSKSVDSAFVATVTRPPNVSLGNPFQVEVGLIFGREDIPADGAVDVLRFANRVPL
                     MYQQGGCLLTKAIESVSWKGYGLEQPGGKGVPKGAATILVHLASTNVQFTSEAKEAVA
                     DNEEVHNEIRLALQEVGRHLKNHRKKSAQKAKAQEKFELVNEILPAISTKASSLLGRD
                     EPDLAPVITRIMNAVFCEDEVTWDKEAKVHRCRIKIHNYTARPRAYSILAQYPETDTA
                     TFVENELGGRREVKGIWCWKLDTIPPGEAGNIEFSIQGLEHNDWNATEVFFRGSGDII
                     GASKIDEGILEQIRTEEEIATKKALEESNMALDDA"
BASE COUNT         3238 a         2781 c         2780 g         3033 t
ORIGIN      
        1 caaaccccct cgaagatgga ttggaaattg tcgacctagt agtggaaatt cacatcctgc
       61 aagcaatacc tattgaaatc agagaagagg ctgcaaaggt acttccaaca ttactcaaac
      121 gcaaagggcg cttgattagt atcggccgtg aagccacaaa tcgaaccaag gaggaaatat
      181 ctctaccttg gccactctct cgaagatggc tcatggaacg gttctcttcg ttagaggtag
      241 taatcttcca gccaattgtg cttgaggatt ggccagatat cgaccggtat gtcggtgtct
      301 ggcagcggac gtctcaatga ccacgtttca taacacgccg gaatatgtct ggaatctggg
      361 atttaacctg aagtgtttct ccatttggat gattaaagct caatgatgat gcatgtagac
      421 aaaggcgccc agtttttgca cgaccttggc catgcatggt atcaccaaca acaggtgcat
      481 tgcgtgcggc catctggaga cgtatctgtg ccctacgtcc agttcgaata tcgaggcgaa
      541 caagagaatg tgtctctgat gtatcctcta ccctccaata tgtaatcgcc tccttagcat
      601 tcgtagcatt ccgatgtgga gcaattctca cccgaagatc cttagactcc tgaatccaat
      661 ctctagcaag gcccgtatcc tctggtaaat aaccgagaag tattgcatga tatattcgct
      721 gaatagaacg atctgcaaac tgttcctgga gatagcgctt agtccgttca tccttagcga
      781 atagcataca tccagaagtc tctctatcaa gacgatgaac gatgaatacc ctacctcctt
      841 caattgcagc atattcgaag gcgcgagcgt gcattgtatc cttttccttc ccctttgatg
      901 tagttacaga caagaggcct gctggtttgt cggctactag taacctatca tcctcataga
      961 gaattttggg gagttcgagt gaacttcgag attgacgctt tggagcatct ccttgtgcac
     1021 gagggagaat cgatactttt tgcccgacta ttacaggagt tcgtgccaca cggcagacct
     1081 tttcgtcaat atgtacacgg ccatcatcaa tcatccgtcg aagacgatta cttgttgcgt
     1141 tatcgtggac tgattggagg acgctcagca gatcactgtc cgcctccact tggacgtcga
     1201 tacgagacat ttcacaacca ctgtgccaat tcaatggcat tcttcgcaac accgacgccc
     1261 agagtttcct caagcgcacg agcgaggagg gtgaagtcgg agtcccgagt agcaatgact
     1321 actgcaccca cccgttcaag gcaatcagat gctagtttcg aagccgtctt catgatatca
     1381 agatcccctg gttcagggta gatgccttcc tccgagattg tcatcccgtc ctcactaaga
     1441 gctgttctct tgtctgcacc tcctctgcgt gctttgaaaa tcgtaacctg ttcgtagatt
     1501 gaatgatggg cctgcaagaa attctcaaca gccttagtct gagcaagaac actttcatgg
     1561 aatccctctt ctgttggtgc gggccaatct ctgaactctt caagaatact aagatgaatc
     1621 tcttcaagca ctttaggcgt gattatcgca tggtatgcgt cgatattgat gtggcgacga
     1681 acattgtaaa tgaggctcaa cgctctctgt gggtcatatt ctccagtgtc tgtattcata
     1741 attcgtgatc taaactcatt gagagcggtc gatggtacaa aggttcggac aaggttcgta
     1801 tttgcacgat ggcggagaat ttggtggaac atcaaagatg aattgggatt tatcaaacca
     1861 tttctgtcca cagtcatccg ccgaagaatt tccgatgcaa ggccatcgag aaggagattc
     1921 gtatcaataa cgatgagagg agggagtgcg agtgaattga aaccacgtcg ttctttgact
     1981 gcaatttggc cctcatattg ctgatacatt gcatccattg atgccttcaa tgcgagctgc
     2041 tcacgaccat tgtaatgtga actgacatta atggcgtgct ccatcattct caatgctcta
     2101 agaggatcct cggaggccac ttcgttagca atgttgtaca cttcaattgg tcgagcgaaa
     2161 tcgttcaatg cattacggaa acgagtctcg atatggtatc gacgagacga tgtcacgcgt
     2221 tgaatgtgat tcagtgctgc acggactctt ccaatgaagg gctcctctgg taatcgacgt
     2281 gaagatggat aggccattag agactcaatg atatcctctt ttcgacgttc gcgctcccgc
     2341 ctctttgaac catcatcatc tggagtattc gcttctacag atgggagtcg cgaatctgca
     2401 aaatcaagaa tcatgtgctt aggatgatta cgagaacgtt tgcttctcga acctgatttt
     2461 ggcatcttgt cgaatgcata tgagaccttt aggtagagtt ggaagcgaga ggtgattgta
     2521 gctgccaact cagtgtgttc gtcaagaaga tctgctgctt cagaccagcg atttgaaaga
     2581 gcgaaattga ttaacgcttt tcgataaagt aacgtcgctc gttcaaaatc tccatgtggg
     2641 ggattttgga agcggggggc ggcctgtttg tagaggcggg ccgcatcgag atgttggccc
     2701 tcacgaactg agattgctgc attagcgacg ggggtccatt cagaacgagg gcgatgattt
     2761 tggagccagg atactagtgc tgaagaagga acttcgtgtt ccataattaa gtcagttacg
     2821 aggggtaaga aacgggcatt gaaacgattt gagataaggg tatcaagaat agtatacgcg
     2881 cgttctttcc gatcagaatc tgtcatttgc acatcattgt taacgcgatt cattctaagt
     2941 aaatcgacga ttgcaaggaa aagagtgcgt tcaagttctg gaagatttga ttcatcgatt
     3001 gccgattcta acgtatctac acgttgttct cgaactagtc catctccccc atccatcaaa
     3061 gcacgtcttg cttctcgaag aacttctgag ccgctctctg tgaggcgtcc ttgaatctcc
     3121 tcgaggttag cgcttgcacc atctaagagg cgaattaatg cagcttcatt gattgagaga
     3181 tacgaggggg gttcagtaga ttcaacgatg tcatgtgcca ttattgcctg ctcctgaatc
     3241 caagaaatat tttctggcgc taggttagca ggagcaagtg aagaagcaag taagattgga
     3301 taagggtttt cagacccttg aagttcattc ttgcaaataa ccagagctaa agattcgatg
     3361 tcgttacctt tcacaagaat ctcaattact tgttcaagtg ttgaagatga taattgaaaa
     3421 cgagaaagat gtgttgcgca acatactcta atctgtgttg gaatctcatc ctctgcgatg
     3481 atgccttccc aagtattagt gtcataattg attgctagtt cacacaggcg ctcagcaagc
     3541 gcttcatggc cctttgccat gcgagatgcg gccagaaaag atgcggaatc ttcaatctta
     3601 gcatccataa tgagtttcgt agcctcttcg atatcccctt tcgcagcaag agcgcgaatg
     3661 aacatccact ggagggaatc agggattggc aaattgttct tttcaagatg gaaaatacca
     3721 gattcaattg tcgacaaatc gagatcttgc tcgattggat ttgtccatgc tgcagttaac
     3781 attgctgaag ataaggcatc attccctgtt gcacatgcac aactcttcca agcatcgaag
     3841 tcgccagatt gtagtcgtgc aaggtggtat aggtcattgg aaatagattg gatttccttc
     3901 cccttgaagt ccgatccgtc aattcgttcc acagctaaat gtggttgatt cgatgcaatg
     3961 tgaaggaggg catcgatgag aatgaggggc gggttcgaag ttgtgctcag aattttgggg
     4021 gcatccttac ggatttgtgt aggtcgaatc cgaccttgga ggccttttgc gagacgttgt
     4081 aaatcaagaa cagatttgga atccagttca gagtgctcta cattctctaa ccatttaccg
     4141 aattcttcga aatttgaggg atctctcctc aaccctccaa tccaatccaa ggattctttc
     4201 gtttctttgg ttggaggtgt tgtacttggg aaagccccaa gcattgcaat tagagggcat
     4261 tctcttgctg cctgcgccca cacagggtgg actccggaat tacacgtaga gcgcaactca
     4321 tcaatgaggg aattatcttc tgccttccat gattttggat ctcgtccctt gtgaatcaat
     4381 aaaactgcaa ggcggtatgc tggactctct tgtgagattc gaattgtatc tacaggctca
     4441 agaaatgctt caattccact tgcaccacgt gcgcctcttc gacggactcc tcgacgacga
     4501 gtcgccttca cctgaacctc ctgatctgga ttgcgtggtt cctctttctg gactatagcc
     4561 atcgccacag gcttccatgc tctatcaagc agagtgaaag agggatgact cacgagttgg
     4621 cggctccgag aattcggatc gtcccctgca cgacggccgg cttcgatgca atctcgcagg
     4681 taggtttcca gactcaacac ttcccgacga ccgagtgccc acggccggga tacatcaacg
     4741 attcgctatg tttggtgatt ttagaccctc aggatgatgt tctgaacccg cgtcccccgg
     4801 tatatggaag cggtggattt cgtgattctc ttgctccacc ccctcatcgc aacagtattc
     4861 ggaatttggc tgtaccgtca ttggagtaca atcaaggcga ttcgactcaa acgtggcgga
     4921 gcatggtctc gaattcgtaa ccgaaatcgg gatgatgtta ttgcagaaca tgaacggcag
     4981 ggaaggtggg ctcttccaac aattctcggc gtcattctgt ttgcaatcct tgccaatctc
     5041 catcgatatg tgaatctaga agtggaattt aatgaattgt tcagccttca tggttggttg
     5101 ggcataactc ttgcattctt gacattctac atgacccgca caggaaagcg aatggttact
     5161 caaagagaag gaaaatcttc aacggctaaa atgaagggaa ttcatcgacg tgcaggagac
     5221 ctgatgcttg cgcttctggt tgcagtgatg tttctcggat tcctgcgggc aatccagatt
     5281 atccaaccct aaccgatgtt tctaacccgc tcattcgacc atttgtctat ccaagccgca
     5341 atgtttcgat tcacgtcttc cgtctcaacc tcgcggtcct cccttaatcc atcatcaccc
     5401 agaggttgaa tgcgacagcc acacgcatcc ctgtggcctc ctccatgtgg atcgaatgcg
     5461 gtagcaagac gagtcaaatc aaccaagcct ccattggaat gtaggaaaga attcgtgtaa
     5521 aatgatgcac taagtggatg tgtgggccca ttcaaggaac ctttcacatc tccatgaatc
     5581 acgatgcatg catcgcattc atcgcccgct tctgcagtaa ttcgataccc gtttgttcga
     5641 atacctgttc catcgaatcg aacaatggct attcgattca ctacagtgag tgaatcatga
     5701 atgattttcg ttatctttga tgcctccatt tcccttcgat gaatggactc ggcaactaaa
     5761 ggatctgcca aaatgcgttc aatcccccag ccctctgcta taccccgtac aatcctctgt
     5821 gcagcctctg gtcgttcaga tgcctcgatg cttctactaa gaacaaccat tggatgattt
     5881 gaaagaaaat cttcacgaga aaccttacca ccatcaagaa catctaccca atcgatcatc
     5941 tcttgaagat ccgatacatc ttgtgactcg ccaactatct caaaggcaat tcgggctgct
     6001 gaaggagttg ctttccaaaa attaagaaca ccttcaacat cggctcgatt ggtttcatgg
     6061 tggtcaatta cggctccaca tgcaggatgg cttggtaaat cacagatgat ggtctgagaa
     6121 tcgatttggt catcaaacac tcctgctcga atcccccctg ggtgcccaaa tcccacaata
     6181 aggtcgggaa atgcacgcaa caagatgcct gctgtcgtaa ttccgtcgag atctccatcc
     6241 gtcagaactc gatgtggctc aatactctgt aacatcgaaa ttcggtctgt catgaggttg
     6301 ccctttggtg tgagtctcaa gtccctttcg gccgaagggt gaaggggggg cagcgttcat
     6361 gacgcttcat ggagacttcc tgtgggctcg ttcttgttaa cggagatctt gtgcttctac
     6421 ttcgttatcc tcagggtcat tggggattcc cgaagggaca cgtcgaagat accgatgcta
     6481 gtccgcacga tactgcattg agagaactaa gggaagaaac tggaattgat gatgcaaagg
     6541 tgattgggag ttggtcacaa actacacaat acacccattc tcgacgaggt gttgagcgag
     6601 aaaaacaggt acattggttc cctgcgaaaa ccaaaacctt cgatgtggta ctatctcatg
     6661 aacacacgga tcacatgtgg gtagaaattg acgaggcagt cgattggatt acattcccag
     6721 cagaaaaaga agtattgaga ggtgcacgtc agattctagg actctgaatc tcttgtaccc
     6781 aagggcaccc aaagaacctc ttcctcggca agagcttggt taacgtggcg tgcagcaaca
     6841 aacatccaat cagaaaggcg attgagataa gcaagaacaa cggggcgaac tgcaccttca
     6901 ccttcagcct caaggagatt gactgcgcac ctctctgaac gacgagttac agtacgaaca
     6961 acatgaagcg ccactacaac cggtgagcca gaaggtagaa tgaatgagct gaggggctcc
     7021 tgttgatctg tccaatggtc catctcttgt acaaggcgat cggcatgttt catctgaact
     7081 agggacatct gctcaggtaa agcactagga gtacctgctg attctcctcc aatatcgaat
     7141 agttcctgct gaatcattga aagcattgga tccaactcct cttcgatacg gagcgcaggt
     7201 acgcgaaccc ccccatcaga atgttgctta ggcaatcgag aaagttccat ccgaatccaa
     7261 ccaattagag aatttagttc gtcgattgtc ccatacattt ccacacgtgg attggacttt
     7321 ggcactcttt cgcctgtcag aaggctggtc tcccctccat ctccaccgcc ggtgtggacc
     7381 cttgtgattc gtaccatctc tattcccgga cattatgcag gctcgacggc tcttgaatgc
     7441 gcacgtctag attcggagtt gcggagtttc gaatagaagc gacgtgcagc gattgaaaat
     7501 agaagtaacc aaagaatgac ttctatgcca gcaatccacc acgcgtaagg cccgaacgca
     7561 tcaaacagaa tttgagcatc caaaggtacc ccgtacagac ccatccacgt agcttgaaga
     7621 atcaggttgg ccccaaacca agtgctcaat atccagaaaa gaatcgaacc atgactccaa
     7681 gaatcacgcg aaatatccca attcacaata caatagtcgt tctgaagggt tatcaatgcc
     7741 tgtctttgat gtatcatcca gagtttattc ctcagattga ttttcgggac cctgggacat
     7801 agaaacaagg cttgaatcga taatttcaat ccaggaagta tcgaccacct cccagccacc
     7861 taagcgacgg aggcgatcct catgcatctc agattcagac aaatcaccaa ttttgctatg
     7921 aattctggcc aaagcagcat gcgccatcac attcagaact ggatcttgca tatcccaaga
     7981 acgctcgaaa tgtgcgattg ctcctcgagg accgtggatt aatccacgtt gagtttgacg
     8041 aagcccggat tgagaccatg ttacgccttg aacgccaact actaagccac ggaagagcaa
     8101 ataaatctcg agcaagataa acaaagaggc ggttgcaaag ttacctattt gctccgctgt
     8161 actctgctct atccaatcta tggtaacaaa accaaagatc cctaccacga gaagaaggcc
     8221 actaaacgga gcaacgatga catcacgctg agtacgggcc atgtgtcggc caccaataat
     8281 cgtaaacaga ccaccgaaaa agattgcaag agcgggtggg acgataggag atgttgctcg
     8341 atccgcaccc atagcaatgt agagaacaag gccaacgaaa aggaaaattc ctccagcagt
     8401 gaacccatgt tcagggaatg gttgatggcg agcatagaca aagagagcaa aggcgactcc
     8461 aacgaagagg aggacccaca gaagcatgaa ctgaggaggg ggcggtagga cttcaatccg
     8521 tggttggaac cccttcgtct ccacgccatc ctggtttcca gaactcaata tcgtcaagcc
     8581 atcgtaacca ttcttctgga tcagaacgaa ttaggcgaaa tgctcgtcgg tcaaggcctt
     8641 caaggagttc atcactaatc tcatcacgtg tatgagcttc cgtccactcg acctgtaact
     8701 ctctgacctt cgccttacct gctgcagggt tctgatattc tcgctcacag gcttcttgga
     8761 gatcgatgag ccacattcgt gagcctcgca tgtggggatt gtcatcacca gaatctgccc
     8821 gtcgtcggtt gaagggccac catcccatga agatggagag taggcggggg tctttcaagc
     8881 atcgactaaa ggaacgttga ggaagccatt gaagatagta aataccctat ggccgccaac
     8941 accaatcatg gcgcgcatcg tggtccacat ccacgggaaa gcaagggacc gagcctattc
     9001 gcatcttgtc gacatgtatg ctgaacgact tgagtcaaag ggggtacgcc tcattcgcca
     9061 cccatcacgt atggatcatg atgattatcg gaagcgtcta ctgaaggatt cgaaaaacgg
     9121 tgtcttgatt ctccttgacg aaaatgctcc atcaatctca acgaaggaca ttgttcaacg
     9181 atggaatcga tggagaagcg ggagtgatac tattcatctt gcgattggac cggttgatgg
     9241 atggaaggat ggattcactg atgaacatga tactctcggt cttgggccct tgacgatgac
     9301 ctatgagatg gctgcagttg tacttctgga acaactctac cgtgcctctg aaattgagcg
     9361 tggcagtagt taccatcgcg attgatgaat caatatcaat gactcagcaa ccgcatctat
     9421 catcacaatc tctgcaaacc cattcaaaat tatgtttgca tctgaatcca tgttctggac
     9481 agcaaggact gtttgctcta gtgcacatgc agaaaagcca aggtccgatt ttcccgcagt
     9541 ggtggcatga atattctgtc atgaaatgac gtcaatatga caattaataa ttattatttt
     9601 gaattaattt caagaatttg cttcccccac caatcaacaa tttcagtatc tagggcctca
     9661 atcagttgtc tctgctcttg gttgttggcc gagttagcga atgctgagtc aatatcaatg
     9721 atgactgtga tattctttgg ttcgtggatg cttcaatgat gatacttcaa taaccctcga
     9781 caaacgagac tcttcgttct gtgagtggcc ctacggcatt cggccgtggg aggactgcag
     9841 cagggggtat ctcattggca aagcgcacga ctagcacaat gaagcaagcg agtattagtg
     9901 agttctttga gaagaacaag catttcctag gttatgatac tctacaacga tccatcatca
     9961 cggctgtcaa agaagcggta gacaactcgc ttgatgcatg tgaagaacat cgaatccttc
    10021 cagatattgc aatcgagtta cgaaaggttc cgaagaaaaa tgaccgaatc atcatggtct
    10081 cacaagacaa tggaccaggg atcccgtcaa aatctatcga gaaagtattc gggagtctcc
    10141 tctttggttc gaggtttcac actattcgac agactcgggg tcaacaagga atcggcataa
    10201 ctggtgttgt gatgtatagc cagttaacta caggcaagac aacacgagtc acatcgaaaa
    10261 ttaccaaaga agccactgca ctccaaatgg acatcggact ggacacaaag aaaaacgctg
    10321 cacttgtctc gaatagggag aggactcatg acttcctcga ttacaatgga atgcctgttg
    10381 aacatgggct gaaagtggaa gcccctatga aagcaaaatt tcagcggggg cggaagagtg
    10441 ttggccagta tttgcgtatg acgtcaattg ttaacccaca tgcaacaatt cgatataggg
    10501 caattgatga taatggggaa atcatcgaag aatttgttgc tgaacgggtt actgaccggc
    10561 ttcctcaccc ggttcgaagt atcaaacccc acccacatgg tcttgaaatt ggtgcgttga
    10621 atcgacttct acgcgatcca accgaacgac gcatgagtct cttcctaagg cacaccttct
    10681 caggagtgcc gatgcgggca atgaaggata ctttggcgca tgcagaggtt gaccctgcaa
    10741 ccagtccaaa caaggtatca ccagaagagg ctcaaagaat tctgaacgca ttcaacacag
    10801 ttcgactaat ggctccacca accgattgcc tctccccaat agaggatctt ctaatcaaga
    10861 aggggttgtc aaaatctgtt gattcagctt ttgtagcaac tgtaactcgt cctccgaatg
    10921 tatctcttgg gaatccattt caagtcgaag tcggcctaat tttcggacgg gaggatattc
    10981 ctgctgatgg tgcagtcgat gtattgcgat tcgcaaatcg tgttccattg atgtatcaac
    11041 aagggggatg tttgctcaca aaggcgattg aatctgtatc ttggaaaggg tatggattag
    11101 aacaacctgg aggaaaaggc gtgcctaaag gtgcagcaac aatacttgtc catctcgcaa
    11161 gtacaaatgt ccaattcact tcggaagcaa aggaagctgt tgcagacaat gaagaggtgc
    11221 acaatgaaat tcggctcgct ctccaagagg taggacggca tctgaagaac catcggaaaa
    11281 agagtgctca aaaggccaaa gctcaggaga aatttgagct tgtgaatgaa atattacctg
    11341 caatatcaac gaaagcgtca agtctacttg gtcgagatga acctgacctt gcaccagtca
    11401 tcactcgcat catgaatgct gtattttgcg aagatgaagt aacatgggac aaagaggcca
    11461 aagtgcatcg atgtagaatc aaaattcaca actataccgc tcgacctcgc gcttattcga
    11521 tcctagctca atatcctgaa accgatactg caacttttgt cgagaacgaa ctcggtggtc
    11581 gacgtgaagt aaagggaatt tggtgctgga aattagatac gattcctccg ggagaagcag
    11641 gaaatattga attttcaatt caaggtttag aacacaatga ttggaatgca actgaagtgt
    11701 tcttccgagg ttctggagat atcatcggag catcaaaaat tgatgaagga attcttgaac
    11761 aaatacgtac tgaagaagag attgctacaa agaaggcgct tgaagagagc aatatggccc
    11821 tcgatgatgc aa
//
LOCUS       DUKB01000196            2543 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_508142, whole genome shotgun sequence.
ACCESSION   DUKB01000196 DUKB01000000
VERSION     DUKB01000196.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_508142"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /locus_tag="HA345_06670"
     CDS             complement(<1..917)
                     /locus_tag="HA345_06670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85077.1"
                     /translation="MAVLNVLCVSTEDFARNLGKRADDRDVESYIYKEMRDEQQDALT
                     FLRPRKHPERIRPLLAALDISDAGVIQVQRIDASLGEVLVATSVAGLRNGALVIDPEE
                     GEWVDPDQLSTIIKQAGLDGWKIMLKADVHTIREQAWETLDRKRKDSDNSIDTPLAIP
                     VDQNFSVKGVGLVAIGTVQTGVVNKHDNLVTAPGGDTGVVRSLQVMDVDVDTASSGDR
                     VGVALRNMKENALSRGIILTRPEDVGHIEVHSSSSIQIEKAPFQKRSIEEGTVIHASV
                     DLQFVVGRCKEVGERIHVDWDTPILVRTGA"
     gene            complement(955..1416)
                     /locus_tag="HA345_06675"
     CDS             complement(955..1416)
                     /locus_tag="HA345_06675"
                     /inference="COORDINATES: protein motif:HMM:NF015048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HIH85078.1"
                     /translation="MMEPYSNEAVTKMDEVFPQHTNAYNTLFGGRLLSIMDTAAGMAS
                     SKFAHREFVTVSVDALKFKRPAYQGDLIETTAKVVHTSTHTAGVYVVAKRLNRSEWER
                     EEICAGFFFMVAIDSQMRPIPIPQFIPETEEDHLFWNRAQTARDAMKANPS"
     gene            1617..>2543
                     /locus_tag="HA345_06680"
     CDS             1617..>2543
                     /locus_tag="HA345_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85079.1"
                     /translation="MAIVLTMLMLTMGLSQAASVSTYSNGQSQAIVELDDSSNYLDST
                     SGSILLPEGETVNAAAMVVGTQYLEYDNYDRYDAHSTGLGSYLWDPQYNGGFTLYSTS
                     NDFSVQDETLALQSLGYNQDFESPVPFTVGPAVNGFQENNWERGMTESGFPIPKCGSG
                     DWCYGTDFDSMNYRNEIGSYTYELTTDSIYVWGGKSQASFQSMHNLYYRNAPSSSFYY
                     EDCAYVMVQSSTDGSSWGAFEFLPFDQSNTTGVSNGNGMYTRGTSVNQITTKCNKYSF
                     PTGATMIGGTSNNSQTASNAGWATVGLDLSSYE"
BASE COUNT          623 a          614 c          579 g          727 t
ORIGIN      
        1 gctccagttc gaacaagtat aggggtgtcc caatcgacat gaattcgttc accaacttcc
       61 ttacatcggc caacgacgaa ttggagatct acagaggcat gtataacggt gccttcctca
      121 attgaacgct tttggaatgg ggccttttct atctggatag aactactaga atgcacttcg
      181 atatggccaa catcttcagg tcttgtcaga atgatccctc gagaaagtgc attctccttc
      241 atgttccgta gagcgacacc gacgcggtct cccgatgagg cagtatctac atcgacgtcc
      301 ataacctgaa gggaacggac cactccagta tcgcctccag gtgctgtgac taagttatcg
      361 tgtttgttga caactccagt ttgtacagtt ccaatagcaa cgagcccgac tcccttcaca
      421 ctgaagttct gatccacagg tatcgcgaga ggtgtatcta tggaattgtc tgaatctttc
      481 cgttttctat cgagagtttc ccaagcctgt tctcgaattg tgtgtacatc ggctttcaac
      541 ataatcttcc atccatcgag gccagcttgt ttgatgatgg tactcaattg gtcaggatcg
      601 acccattcac cctcttctgg gtcgataacc aaggcgccat tacgaagtcc tgcgacagag
      661 gtcgcgacaa gcacttcacc tagtgatgca tcaatacgct ggacctggat tacacctgcg
      721 tccgagatgt caagggccgc tagtaagggt cgaattcgtt ctggatgctt tcgtggtcta
      781 aggaaagtca aagcatcctg ttgttcatcc ctcatttcct tgtagatgta ggattcaacg
      841 tcacgatcat cagcccgttt tccaagattt cttgcaaagt cctcggtact cacgcacaga
      901 acattcagca cagccatagt tcgcgggaac ttcaactctg attcaatgat tgcgtcaaga
      961 tgggtttgcc ttcatcgcat ctcgagcagt ttgtgctcga ttccagaata ggtgatcttc
     1021 ctccgtttcc gggatgaatt gaggaatagg aattgggcgc atctgtgagt cgattgcaac
     1081 catgaagaag aatcctgcac agatttcctc tcgttcccat tcacttcggt tcaatctctt
     1141 tgcgacgaca tagacaccag ctgtatgagt actggtgtgc actactttcg ctgtcgtttc
     1201 aatgaggtca ccttggtatg ctggccgctt gaatttgagt gcatcaaccg agaccgtgac
     1261 gaattcacga tgagcgaatt tacttgatgc catacctgct gcagtatcca tgatactgag
     1321 aagacgtcct ccgaataggg tgttgtaggc gttcgtatgc tgtggaaata cctcatccat
     1381 cttggttacg gcttcattcg agtatggctc catcatggaa atgcaccgta tcctcctctg
     1441 atttgaacca gtggttgagt cggcatctga gatgaggatt cagccgtatt atgtctcatt
     1501 ccagagggca ccatgaacga gtggtgtttt aagccatcca accgtggatt agccacccac
     1561 ctttgggtat gtgatggaag atgacgagtg aatcaatcaa tcgcaccaag agaactatgg
     1621 ccatcgtgct gactatgcta atgctgacaa tggggctatc acaggctgca tctgtatcta
     1681 catattccaa cggtcagagc caagcaattg tcgagttaga cgattcttct aactaccttg
     1741 attcgacttc tggttcgatt cttctacccg aaggtgaaac agtcaacgca gcggcaatgg
     1801 ttgttggaac acaatacttg gaatacgata actatgatcg atacgatgcc cattctactg
     1861 gcctcggatc ttatctctgg gatcctcaat ataatggggg attcactctt tattctacct
     1921 ctaatgattt ttcagtacag gatgagacct tggctctaca gagtttaggt tacaatcagg
     1981 attttgagtc ccccgtacct ttcactgtag gtcctgcagt caatggtttc caagagaaca
     2041 attgggagcg cggtatgact gaatcaggtt tcccgattcc taagtgcggt tctggtgact
     2101 ggtgttatgg gacagatttc gattcaatga actaccggaa tgaaattggt tcctacactt
     2161 acgaacttac cactgattcc atctatgttt ggggtggaaa atctcaagcg tcgttccaat
     2221 ccatgcataa tctgtactac cgcaatgccc cctcctcatc tttctactac gaggattgtg
     2281 cctatgttat ggtccagtca tcgactgatg gttcctcatg gggtgccttt gagttccttc
     2341 cctttgatca atccaatact actggtgttt caaatggtaa tgggatgtat acacgtggaa
     2401 cttccgttaa tcagattacg acaaagtgca acaagtactc cttcccaact ggtgcaacta
     2461 tgattggagg gacttcaaac aatagtcaga ctgcttctaa tgcaggatgg gcgactgttg
     2521 gcctcgacct ctcaagctat gag
//
LOCUS       DUKB01000197            8027 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_9233, whole genome shotgun sequence.
ACCESSION   DUKB01000197 DUKB01000000
VERSION     DUKB01000197.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8027)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8027)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8027
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_9233"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /locus_tag="HA345_06685"
     CDS             <1..604
                     /locus_tag="HA345_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85080.1"
                     /translation="EAEAEAENQRKQAEKEAAERQARMDKELEERRKRLQNLDEKARK
                     KEEELIRVAEKAKTIDFGTLGVAASSKLKKKVEKGTEDLEVADASRFDDKGEAFISDT
                     DGGARISWSGKAGNRLTGVKGIKRGFAAAAVLTVSDDLQKIKGIGPFIEDKLHALGIY
                     TFDQVGRMTAELEETVNVAIEFFPGRVKRDEWAKQARKFA"
     gene            712..>8027
                     /locus_tag="HA345_06690"
     CDS             712..>8027
                     /locus_tag="HA345_06690"
                     /inference="COORDINATES: protein
                     motif:HMM:NF017183.1,HMM:TIGR04534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85081.1"
                     /translation="MVTLAQTAYSSGLTGWEYPERLSNQDDSMGSIACNTATLGANDP
                     IHVDRVNGSDAWAGTAACPKASITSAVGNASAGDEIIVHAGIYHENITIDNKDNLLLR
                     AASGERVVMDGTRSISDDFDLTWDIADGSGIQEVALPQSGWQLFLNRTEQVPARWPNA
                     AFSNNSVFNRTYWAEGTLTNSNNAYTLGWLQDAGPESGIHDGLNETINATGLDPVGAI
                     AILNVGSFKSFSREITSWNPSNGTFGYDGTGMSWKTKHHAYFLEGQRELIDVDGEWWL
                     NSTNNRLHYRPPSGQDANDLDLRVKVQPFAITVQNSDGVSIEGIDFFGTTIKVDQCDE
                     CTFANSTLEYSSTSRRSQGIAGESADERFVTYFYRCTNTLVDAVSITNTDGAAIEFHG
                     AAGQSNGNIVNNSYFHAIDWSASDQKGLMTTIYEGGRDMTFSNNTVHLTGASSVLSIG
                     DSPTVIYNEVWDVGHLQTDGAVVQLMQGEVEGSEIAYNWIHDIGKYGIRFDAPIGQSS
                     TGNNGSIHHNVIWNASGGIMVKGDYHDISNNTVFGNQVDGKNNIIILHESNTGNENST
                     IWHNAADAIAAHRSNAWPSNPLQAGTYGNNWNGYLNASTQLGFEIEEPGTNSMHGVVS
                     LNGDGTRVAVGASQDYGWKGSAKVYEFTPSNDTWSQIGNGIYGAAIFESVGASVALNE
                     TGDRMIVGAPGELSSSLHGVALIYEYTSSNDTWWQMGDNITAASNGIRFGSAVAINDQ
                     GNRVVIGDWANTVGGTNSGQVKTFEYSSLNNTWWQIGATFNGGYLDWLGYSLSMNSAG
                     DRIAIGSPYDGGGATKIFQYSATNDTWWQIGSTITGITNSISGNSLSLDSVGNTLIVG
                     EPAFQGAALVGQARVFNYTASNDTWWQLGENITGTLNGANGNRLGYHVDIDADGDTVA
                     IGTPLQDASATNAGKVEVFRYSTSNDTWWQDGEDIDGFVAEARYGHVSLNDAGTRLAV
                     GTTSGTAIDPVRIFSLPPANTVGIGYGPSVEAMLVDPDSQDFRPKVDSTLDQLDAGAY
                     DAADNDPWDAGIEWSYSRSSNYTTGCMDSIALNYDPNAGFDDGSCRYLEAEVDERVGI
                     LNQAIEPITFTESLSNFDFGTWSTGVSNGTTTFSQSWRKPAGASTDANYDFQDFAIAE
                     NGDQAIVFTQNHSGGSTPHSLALMYKPFNGAWSSSIIDNSTNTGFKPSIAIDRTGALH
                     IAYIDNANDTIRYATNVSGPWAFSTLGDADWTDSHSRKTDIAIDPITDAVYIVHTMKD
                     VGDSGSALEGARFHTNEDGSWVNETITHRGLKSGYDSQIALDSDGNIHVAYYLDQGSD
                     LKIASRINGVWQNETIAGSTASSGSNFNAGNTPAIAIDSQDVIHIISMTNHGSSNKRL
                     ALYSGTIGSWTATTFGTTSLYRHSYNPSIAVDSNDAIHIAYHYGTTSKHLHYISNMSG
                     PWSLETLDSSLAGWGARVSIDNNDDIHIAHSDLVGSGTTAHYLEVTKRTGSGEGLTAH
                     PIFDISPPLPDGLSMNWRNGTITGTPEEFQQNTTYTVWANISEISASTSISIGVDWSL
                     RPSVPGVSSTLNSAITPITFEWNTTIWESRVTNGSDHPSSATNSNEAGKATDVAADSN
                     GKTHVVSFDDNNDDLRYTTNAGGTWTSALINTSGNTGRHPSIVIDSNDMIHVVFVRQT
                     GTSLVYMNKSVSATSWSSPTTISSDAWNKATGLALDEDDNLYVSWARNDANYKRQCFV
                     KTKPVSSSTWSDLPGLYTHYQSENHRVRSACDVAVDSNKKVHIVAHDATPSSNSGDLR
                     YTTNVSGSWVSSDVRGYSSSSADTGRLVKIAIDSNDKIHLTYVEDTGTARVYHDTNSA
                     GSWSQTLVSWGDHPAIAIDSNDDVYIVLGNSGGLSGYRRAASSTGSFSYTTSPSCSGG
                     CDEYTSVVADNNDDFHISFARHLNNRLGVSYEQGTGKGVKNDPGSWRPVISAISSCEV
                     SPSLPQGLSINNARCTLSGTPTEVSSNQTYTVWANTSSGESFTTQIWLRVVQSPGAFE
                     YNPENNILTNNTEFHLAPNFINVATGNGSTWQITNNPGAGSSYPGDYLQLLVGDTLYF
                     SSDDGSTGIELWAHDTSNHSTWQVADISSGGSSSIPGNYLEILVGDTIYFSANDGSTG
                     VELWAHDTSNHSTWQVADIRSGSASSSPGNYIKILVGDTLYFSANDGTSGTSTGTELW
                     AHTTSNHSTWRVADTYSGTGNSNPGQFMQLLVGDTIYFDANDGSRGTELWAHTTSNHS
                     TWQVADIRSGGSNSHSNPGFLHQPILIGNTIYFSANDGSNGYELRAHNPSSINYSTNT
                     GGDVTSWEINASLPGGLFIGPSNGTIYGTPTELWTQPSYMVWANNSAGPSVAYLNITV
                     VDEAPDISYSPDWFVLTNNTAMSPTATPTNSGGAIPSGIIDSTGNVGEYTSIAIDSNG
                     FRHISYYDSTNTDLKYA"
BASE COUNT         2280 a         1821 c         1913 g         2013 t
ORIGIN      
        1 agaggcggaa gcagaagctg agaatcaacg aaagcaggct gagaaggagg ccgctgaacg
       61 ccaggctcgc atggacaaag aactcgagga acgtcgcaag cgtctacaaa atctcgatga
      121 gaaggcacga aagaaggaag aagaactcat tcgtgttgct gagaaagcga agacaattga
      181 tttcggcact cttggtgttg ctgccagtag taagctgaaa aagaaggtcg agaagggtac
      241 cgaggacctt gaggtagctg atgcatctcg cttcgatgat aagggcgagg cattcatttc
      301 tgacacagac ggtggcgcac ggatttcttg gtcaggtaag gcaggtaacc gacttactgg
      361 cgttaaggga atcaagcgtg gctttgcagc agcagcagta ctgacagttt ctgacgatct
      421 tcagaagatc aaaggaatcg gaccgttcat tgaggacaaa ctccacgctc ttggcatcta
      481 cacattcgat caagttggcc gaatgactgc agaacttgag gagacggtaa acgttgcaat
      541 cgagttcttc cctggccgag ttaagcgaga cgaatgggca aaacaagccc gtaaatttgc
      601 ttaaatcgct gatttgagat aacaacctaa taatgtaaaa tcagccccaa aggggctgtg
      661 tacggcacca ttcgtggtaa acgggctcgg gccatctgcc tcgccgtcct catggtaaca
      721 cttgcacaaa cagcgtattc cagtggtttg actggttggg aataccccga acgcctcagc
      781 aatcaagacg attcaatggg ttctattgct tgcaatactg caacgcttgg agcaaatgat
      841 ccaatccatg ttgatcgggt caatggtagt gatgcgtggg ctggcacagc agcttgccca
      901 aaggccagca ttacttcagc agtaggcaat gctagcgcag gtgacgaaat catcgttcat
      961 gccggcatat atcacgaaaa tatcaccatc gacaacaagg acaacttgct tcttcgagca
     1021 gcttccggtg aacgtgttgt tatggatgga acaaggagta tttctgatga tttcgacttg
     1081 acttgggata ttgccgatgg tagcggaatc caagaagttg cccttcctca atcaggttgg
     1141 caacttttcc tcaataggac tgaacaagtt cctgctcgct ggccgaatgc ggctttttcc
     1201 aataacagcg tcttcaaccg tacctattgg gctgaaggca ctcttaccaa ttcgaataat
     1261 gcatacacac tgggatggct gcaggatgct gggccagaat ccggtatcca tgatggacta
     1321 aacgagacaa tcaatgcaac tggtcttgat ccagtgggag caattgccat tttgaacgtg
     1381 ggttcattca agtcattcag tcgagagatt acatcttgga atcctagcaa tggcaccttt
     1441 ggatatgatg ggacagggat gtcctggaag acaaagcacc acgcttactt cctcgaagga
     1501 caacgagaac tcatcgatgt ggatggtgaa tggtggttaa acagcacaaa caatcgtctt
     1561 cactaccgcc caccttctgg tcaggatgcg aatgatcttg atcttcgagt aaaggtccag
     1621 ccctttgcaa tcacagttca aaattcagat ggagtgtcga ttgaaggcat cgacttcttt
     1681 ggcaccacca tcaaagtaga ccaatgtgat gaatgcacat ttgcaaattc tacactcgaa
     1741 tattcaagta cgtctcgacg cagccaaggt atcgctggtg aatctgcaga tgagcgattc
     1801 gtgacatact tctaccggtg tacaaatacc ctagttgatg cagtttcaat tacgaataca
     1861 gatggtgcag cgattgaatt ccatggtgct gctgggcagt caaatggtaa cattgtgaac
     1921 aattcatact tccatgccat cgattggtct gcatccgatc agaaagggtt gatgaccaca
     1981 atttacgagg gtggccgcga tatgaccttc tcaaataaca cggttcatct tacaggtgca
     2041 tcttctgtac tttccatcgg cgattcaccg actgtaatct acaacgaggt atgggatgtt
     2101 gggcatctcc aaaccgatgg agcggtcgta caattgatgc agggtgaggt tgaaggctca
     2161 gagattgctt acaactggat tcacgacata gggaagtatg gaatcagatt cgatgcacca
     2221 ataggtcaat cctcaacagg gaataatggc tcaatccatc ataacgttat ttggaatgcg
     2281 agcggaggca tcatggtgaa aggcgattat catgatattt ctaacaatac agtatttggg
     2341 aatcaagttg atggtaagaa caacatcatc attctccacg agagtaacac tggaaacgag
     2401 aactcaacaa tttggcataa cgccgccgac gctatcgcag cccaccgctc taatgcctgg
     2461 ccctccaatc ccttacaggc tggcacgtat ggcaacaatt ggaatgggta tctgaacgct
     2521 agcacccagt taggctttga aatcgaagaa ccagggacaa actccatgca cggagtcgta
     2581 tcattgaatg gtgatgggac cagggtcgca gttggtgcgt ctcaggatta tggatggaaa
     2641 ggatcggcta aagtgtacga atttacccca tctaacgaca catggtcgca gattggaaat
     2701 ggaatatatg gtgcagcgat ttttgaaagc gtaggggcat cagtggccct gaatgagact
     2761 ggagatcgca tgatagtcgg agctcctggt gaattatctt ctagtctaca tggcgttgct
     2821 ctcatctatg aatacacttc ttcaaatgac acttggtggc aaatgggtga caacataacc
     2881 gccgcttcga atggaattag attcggtagc gcagttgcta tcaacgatca aggaaatcga
     2941 gttgtgattg gtgattgggc caacactgtt ggtggaacaa atagtggaca ggtcaagacg
     3001 ttcgaatatt cttctttgaa caacacatgg tggcaaatag gtgcaacatt caatggagga
     3061 tacctggatt ggctaggtta ctcgctttcc atgaattccg ccggagatcg aatcgcaatt
     3121 ggctcacctt atgacggtgg aggagcgaca aagatcttcc aatacagtgc cacaaatgat
     3181 acatggtggc aaatcggctc gacaattacg ggcattacca atagtatatc aggaaattct
     3241 ctctctctag attctgttgg taacaccctc atcgtaggag agccagcatt ccaaggggct
     3301 gcgctggttg gtcaagcacg tgtcttcaac tacaccgcat ctaatgacac ttggtggcag
     3361 ctgggagaga atatcactgg tactctgaat ggagcaaatg gtaatcggtt gggttaccac
     3421 gtggacatcg atgctgatgg agacacagtc gcaatcggta cacccttaca ggatgcctct
     3481 gctactaatg caggaaaggt cgaggtcttc cgatacagta cctcaaacga cacatggtgg
     3541 caggatggcg aggatatcga cggtttcgta gcggaggcaa gatatggaca cgtctcattg
     3601 aatgatgcag gtactcgact tgcggttggg acgacctcag ggaccgccat agatccagtt
     3661 cgaattttct ctttaccacc ggcgaacacc gtagggattg gctatggtcc atctgtagag
     3721 gcgatgttag ttgaccctga ttcacaagat ttcagaccga aggttgactc aacattagac
     3781 caactggacg caggagccta cgatgctgca gacaatgatc catgggatgc aggaattgaa
     3841 tggtcctatt cacggtcttc aaattacaca acaggatgta tggattctat tgcattgaat
     3901 tacgatccaa acgctgggtt tgatgatgga agttgtagat atttagaggc tgaagttgat
     3961 gaaagagttg gcatattgaa ccaggcaatc gaaccaatca ccttcactga atcattgagt
     4021 aatttcgatt ttggaacttg gtcaactggg gtttccaatg ggacaaccac attttctcaa
     4081 agttggcgca agccagcggg ggctagtact gatgcaaatt atgacttcca agattttgca
     4141 attgctgaga atggtgatca agcaattgta ttcactcaga atcatagtgg cggaagtaca
     4201 cctcatagtt tggctctaat gtacaaacca ttcaatggcg cttggtcttc gagtattatt
     4261 gataattcta cgaatactgg attcaaacca tcaatagcaa tcgatcgtac aggagcactc
     4321 catatcgctt acatcgataa tgcgaatgat acaattcgct atgctaccaa tgtgtctggc
     4381 ccatgggcgt tctcaacgtt gggcgatgca gattggactg attctcatag tcgtaaaaca
     4441 gatatcgcca ttgatccgat tactgatgca gtatacattg ttcacaccat gaaagatgta
     4501 ggtgattctg gaagtgctct agaaggtgcg cgtttccata ccaatgaaga cggttcatgg
     4561 gtgaatgaaa ccattacaca tcgaggatta aaatcaggat atgactcaca aatcgctcta
     4621 gattcagatg gcaatatcca tgttgcgtat tacttggatc aaggaagcga tttaaaaatc
     4681 gcgagcagaa tcaatggtgt ctggcagaat gaaactatag ctggaagcac cgcatcgtca
     4741 ggtagcaatt tcaatgctgg aaatactcca gcgattgcta ttgattctca agatgtgatt
     4801 catatcatca gtatgaccaa tcatggatca agtaacaagc gcttagccct atattctgga
     4861 acaattggct cctggacagc gacaactttt ggcacaacat ctctttatcg ccattcctac
     4921 aacccttcaa tcgctgtgga ttcaaatgat gcaattcaca tcgcctatca ttacggtaca
     4981 acatccaagc atttgcatta catatcgaac atgtcagggc cttggagtct ggaaactcta
     5041 gacagtagtc tagctggatg gggtgctcga gtatctatcg ataataatga tgatattcac
     5101 attgctcatt ctgatttggt aggatcaggg acgactgcgc actaccttga ggtgacgaag
     5161 agaacaggtt caggagaagg tttgaccgcc catcctatct tcgatattag ccccccactt
     5221 cctgatggat tatcgatgaa ttggcgtaat ggtacgatta ctggaacgcc cgaagaattc
     5281 caacagaaca ccacttacac ggtatgggca aacatatctg aaatatcggc atctacatcg
     5341 atttctatcg gcgtagattg gagtttgagg ccgagtgttc ccggggtgtc atcaaccctt
     5401 aattcagcaa ttactccaat cacgtttgag tggaacacaa ccatatggga atcacgggta
     5461 acgaatggga gcgatcaccc aagttctgca actaattcta atgaggcagg aaaagcaaca
     5521 gacgttgctg cagattcgaa tggtaaaacg cacgtagttt ctttcgatga caataatgat
     5581 gacttgagat acaccaccaa cgcaggggga acttggacct ctgctctaat caatacatca
     5641 ggaaatacgg ggcgacatcc atcgattgtc atcgattcca atgatatgat ccatgtagtg
     5701 tttgtccgac aaacaggtac cagtttagtg tacatgaaca agtcagtttc tgcaacttca
     5761 tggtcttcgc caacgacaat tagtagcgat gcttggaata aagcaactgg gcttgcacta
     5821 gatgaagacg acaatttgta tgtatcttgg gcgagaaatg atgcgaatta caagcgacaa
     5881 tgtttcgtta aaaccaaacc tgtgtcctct tctacatgga gtgacctacc tggtttgtat
     5941 acccattatc aatccgaaaa ccatcgggtg agatcggctt gcgatgttgc tgttgatagc
     6001 aataagaaag tccacattgt tgctcatgat gccactccaa gtagcaatag tggagacctc
     6061 cgatatacaa caaatgtaag cggttcatgg gttagttctg atgttagagg atattcctct
     6121 tcaagtgcag atacaggcag actcgtaaaa attgcaattg attccaatga taagatacat
     6181 ctgacatacg tagaggatac agggactgca cgggtatatc atgatactaa ttcagcaggc
     6241 agctggtccc aaacccttgt ctcttgggga gaccatccag caattgccat cgattccaat
     6301 gatgatgtgt atattgtttt aggcaatagt ggagggcttt caggataccg gcgtgctgct
     6361 agttccacag gttctttttc ttatacaacc agccctagtt gttcaggagg ttgtgatgaa
     6421 tacacctcgg ttgttgccga taacaatgac gatttccata tctcctttgc acgacatctg
     6481 aataatcgat taggcgtatc gtatgaacag ggcactggaa aaggagtgaa aaatgatcca
     6541 ggttcttggc gccctgtaat ttctgcaata tcatcttgtg aagtttcacc atccttgccc
     6601 cagggtcttt caatcaataa tgcacgatgt actctttcag gaactccaac tgaagtatcc
     6661 agtaaccaaa cttacacggt atgggcaaac acaagttccg gggaatcatt caccacccag
     6721 atttggcttc gagttgtgca atctccgggc gcatttgagt acaatccaga gaacaatatt
     6781 ttgacaaata atacagaatt ccatcttgct ccgaatttca tcaatgtggc gactggaaac
     6841 ggttcaacat ggcagattac caacaacccc ggtgcaggaa gtagttaccc tggggattat
     6901 ctgcaactcc tcgttggcga caccctctat ttctcctccg atgatggaag cacagggatt
     6961 gaattgtggg cgcacgatac ctccaaccat tccacatggc aagtggctga catcagcagc
     7021 ggtggatcca gcagcatccc tgggaactac ctcgaaatcc tcgttggcga taccatctat
     7081 ttctctgcca atgatggaag cacaggggtt gaattgtggg cgcacgatac ctccaaccat
     7141 tccacatggc aagtggctga catacgcagc ggttcagcaa gcagctcccc tgggaactac
     7201 atcaaaatcc tcgttggcga caccctctat ttctctgcca atgatggaac ctcagggact
     7261 agcacaggga ctgaattgtg ggcacacacc acctccaacc attccacatg gcgagtggct
     7321 gacacctaca gcggtactgg aaacagtaac cctggacaat tcatgcaact cctcgttggc
     7381 gacaccatct atttcgatgc aaatgatgga agcagaggga ctgaattgtg ggcacacacc
     7441 acctccaacc attccacatg gcaagtggct gacatacgca gcggtggatc caatagtcac
     7501 agtaatcctg gatttttaca ccagccaatc ctcattggca ataccatcta tttctccgcc
     7561 aatgatggaa gcaacggata tgaattgcgg gctcacaacc catcgagcat caattacagc
     7621 accaacacag gcggggatgt tacttcatgg gaaatcaacg ccagcctacc aggcggtctt
     7681 ttcattggcc caagtaacgg taccatctat ggtacaccaa cagaactgtg gacacaaccc
     7741 tcctacatgg tctgggcgaa caacagtgct ggtccatcag ttgcttatct caatatcact
     7801 gtagtcgatg aagctccgga tatctcgtat tcaccagact ggtttgtctt gactaacaac
     7861 accgccatgt caccaacagc aacaccgacc aattctggcg gtgcaattcc atcaggcatt
     7921 atcgactcca caggtaatgt gggcgagtac acctctatcg ctatcgattc gaatggattt
     7981 aggcacattt catactatga ttcaaccaac acggacctca agtatgc
//
LOCUS       DUKB01000198            4010 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_259649, whole genome shotgun sequence.
ACCESSION   DUKB01000198 DUKB01000000
VERSION     DUKB01000198.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4010)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4010)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4010
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_259649"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1398)
                     /locus_tag="HA345_06695"
     CDS             complement(<1..1398)
                     /locus_tag="HA345_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85082.1"
                     /translation="MNCLYHCPDGAAMVGATRLPAGPTVRADPFILRALNNSQQSMLV
                     GRQGVASLIIDQMTHGTPAVHLIVGPSGSGRTSLLNCLAPEDSRHIGNIWNEETKTTG
                     VIHEAVAKFTNQFQIPPTPQSAADYLRRHLEGRTGHLDLIAFDYPYIPTSDLLAIVQN
                     IVPALQTMRAMTVVSMSDAQYRDLGQSIEGSFEWIHHLSPLSLEETRTLVDLRMNSVS
                     NEVLLEQGEGISRLHAYTGGNPKEIVRQCGLHLRHLRFPDQYPLDAPFMNQQLPISPS
                     IQSNIGSPHSSSSRMGPRPEPQRPLFPSTTVVPVQEIPPHSHEVNDDGYDAWFADSKV
                     ENQLPKSFDSNHIEVSSVDINDDNRPLFESIDDDPYGGIGFDPEVIHIADQDEVIDFD
                     ESQVLYLETEEMESELPNMLDQEEEVFDDSYEATGSNDSELLSMDSGPVSDIHTSDMY
                     AENDVNISSEPIGLEP"
     gene            1633..2928
                     /locus_tag="HA345_06700"
     CDS             1633..2928
                     /locus_tag="HA345_06700"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HIH85083.1"
                     /translation="MPVDDSRISGFYALDANERRKIIADYTGIGLDEMAAWSNPDSMD
                     ADTADRMIENVVGRYSLPVGIGMNFLIDGTPRLIPFCVEESSIVAAASNIAKRAHPCG
                     GFQTEMDPPMMIGQLQILDVDDVSAAVAAIESEKFSIIERCNDIESTMIRLGGGCKDI
                     RCRTLETASQTMLIVHLVVDTRDAMGANAVNTMAERAAPWFESLTGGRVLLRILSNLA
                     TERLARATVRISPEAISSKGDAEEGRRIIEDIILAYEFADADPWRAATHNKGIMNAVS
                     SIGVACGQDWRAIEAGAHAYAALSGRYRSMTRWWIDGEGWINGSIEIPLAVGTVGGAS
                     KVHPVARLNLRLADVEGSQDLASLMVCAGLAQNLGAMRALATKGIQAGHMRLHLRNMV
                     ISAGADGDEIDTVADAVRNHGGAITQSLVDTMLAKHRQI"
     gene            complement(2925..3545)
                     /locus_tag="HA345_06705"
     CDS             complement(2925..3545)
                     /locus_tag="HA345_06705"
                     /inference="COORDINATES: protein motif:HMM:NF016005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HIH85084.1"
                     /translation="MTDPSIESIVEALLFCSGRSLKSSEISEQSGHPESAIVDSLTTL
                     QNQYRRRRDSALSIVEVGGRWSMEVHPRLSAHLPSELRGDIPDRLQRAAALIAYHQPM
                     MQSDLVQMMGPIAYDYVRALARLGLVDRRRQGNSRRLRTTRYFAERFQCPHTEPKKVR
                     EWFRGQAEASGITSQNLVDSIRELDPDVGDMDFVPESDGTEDDLED"
     gene            complement(3542..>4010)
                     /locus_tag="HA345_06710"
     CDS             complement(3542..>4010)
                     /locus_tag="HA345_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85085.1"
                     /translation="MLFSLKAAHDQAEDRRLREAARIRHQVDVEEAMANVSSRMHREN
                     LEEDIQRCWSALRKLGRDGSPVELADVRTYLSSIAVEEGASEDEAEAEGEISGFVASL
                     FLTHRGFAEIWQMGEANQGRIFLRDRWPKVETFDEARVAIARERGITLEEVEA"
BASE COUNT         1081 a         1006 c          992 g          931 t
ORIGIN      
        1 tggctcaagt ccaattggtt cagaactgat attgacatcg ttttcagcat acatatcaga
       61 cgtatgaata tcagatacgg gtcctgaatc cattgacaac agttccgaat cattggaacc
      121 cgttgcctca tacgagtcat caaacacctc ctcttcttga tccaacatat ttggcagttc
      181 agattccatt tcctctgttt caagatatag tacctgactc tcatcaaaat cgatgacctc
      241 gtcctgatcc gcaatatgaa tcacctccgg atcgaatcca attccaccgt aagggtcgtc
      301 atcgatggat tcgaagaggg gacgattatc atcattaata tcaaccgaag acacctctat
      361 atgattcgaa tcaaaggatt tcggcagctg attttcgacc ttggaatcag caaaccaggc
      421 atcataaccg tcatcattta cctcatgaga atgaggtgga atctcttgga ctggaacaac
      481 ggtagtggaa ggaaaaagag gtcgttgagg ctctggacgg ggacccatac ggctactaga
      541 tgaatgagga ctccctatgt tggactgaat cgagggcgag attgggagtt gctggttcat
      601 gaatggagca tcaagtggat actgatcagg aaatctcaga tggcgcaaat gcaacccaca
      661 ttggcgaact atctcttttg gattgccacc agtgtaagca tgtaggcgag atatcccttc
      721 gccttgctcg aggagtacct cattggatac cgaattcatt ctcaaatcga ccaacgtccg
      781 ggtctcttca agagacaacg gggaaagatg gtgaatccac tcgaatgacc cctcaatgga
      841 ttggcccaaa tcgcgatact gtgcatcact catggaaacg acggtcatgg ccctcatcgt
      901 ttgtagtgcc ggaacaatat tctgaacaat agccaatagg tcagaggtag ggatgtatgg
      961 ataatcgaag gctatgaggt ccaagtgccc cgttctccct tccaaatgac gtcgtaagta
     1021 atcggcagct gactgaggag taggtggaat ctggaactga ttagtgaact tggcaactgc
     1081 ctcgtgaatg acgcccgtgg tctttgtctc ctcattccag atattaccaa tatggcgtga
     1141 atcctcagga gctagacaat tcaacaggct agttctccct gaaccgcttg gaccgactat
     1201 gaggtggaca gctggcgtcc catgagtcat ttgatcgatt atgagagaag ccaccccctg
     1261 gcgaccgacc aacatgctct gttgagagtt attcagagcg cggagtatga atgggtcagc
     1321 acgaacggtt ggacccgcag ggagccttgt tgcaccaacc atcgctgccc catcagggca
     1381 gtgatataaa caattcacac aaattcacac aacattcacg catttctcaa tcattttctt
     1441 agacgccaga gaaagaaaac gatggcttgg agaccattta gaatttgaaa atgacgggaa
     1501 ataacggaaa ttaacactta gcaataaagc gttaattgcg ttaattgcac tgtttcgaag
     1561 gggatccggc tgcatcttcg cgtgggcaag ggacatagga tgccccgatt tcggagggaa
     1621 tggggcgaga caatgccagt ggacgatagt cggattagtg ggttctacgc actagatgca
     1681 aatgaacgac ggaagatcat agcagattac actggaatcg ggctcgacga gatggccgca
     1741 tggtcaaatc cggattcaat ggacgcagat acagctgacc gcatgattga gaacgttgta
     1801 ggcagatatt cgctaccagt gggcatcgga atgaactttc ttattgacgg gacacctcga
     1861 ctgatcccct tctgtgtcga agaatctagt atagtcgcag ctgcaagtaa tatcgcaaag
     1921 cgtgcccacc cctgtggcgg attccaaact gagatggacc cccccatgat gattggtcaa
     1981 ctccagattc tcgatgtgga cgatgtttct gcagccgtcg ctgctatcga atctgaaaag
     2041 tttagcataa tcgaaagatg caacgacatt gaatctacca tgatccggct cggaggaggg
     2101 tgcaaagaca tacgctgtag aacacttgag acagcgtcgc aaacaatgct catcgtacac
     2161 ctagtagtag atacaagaga cgcaatgggg gcaaacgcgg ttaataccat ggctgaacga
     2221 gcagcaccct ggtttgaatc actcactgga ggacgtgtac ttctccgcat cctatcgaat
     2281 cttgcaactg agcggcttgc acgagcaact gttcgaatct ctccagaagc aatatccagc
     2341 aaaggagatg cagaagaagg gcgcagaatc attgaggaca tcatcctagc ctacgaattc
     2401 gctgacgctg acccttggcg tgctgcaaca cacaacaaag gcatcatgaa tgctgtttca
     2461 tccataggag tagcctgtgg ccaagattgg agggctatcg aagcaggagc ccatgcctat
     2521 gccgctctaa gcggaagata ccgctccatg acacgctggt ggattgatgg agaaggttgg
     2581 attaacggtt caatcgagat accgttggcc gttgggaccg ttggaggtgc ctcgaaagta
     2641 caccctgtcg caagattgaa cctccgatta gccgatgtag aggggtccca agaccttgca
     2701 tctctgatgg tctgcgctgg gttggcgcaa aacctcggcg cgatgcgcgc cctagctacg
     2761 aaggggatcc aagcggggca tatgcgcctt cacctccgga atatggtgat ctccgctgga
     2821 gcagatggag atgaaataga cacagttgca gatgcggttc gtaaccatgg aggcgcaatc
     2881 acacaatcct tggtagatac gatgctagca aaacatcggc aaatctagtc ctcgaggtca
     2941 tcctctgtac catcagattc tggaacaaaa tccatgtcgc caacatcggg atcgagttct
     3001 ctaattgagt cgaccagatt ctgcgacgtg atgcctgatg cctctgcctg ccccctaaac
     3061 cactctctaa ccttctttgg ctcagtgtga gggcattgaa agcgctcagc gaagtagcga
     3121 gttgttcgca aacgacgaga attaccttgc ctacggcggt cgactaagcc aagccgtgct
     3181 aatgcacgaa cgtaatcata ggcaataggc cccatcatct ggactagatc actctgcatc
     3241 ataggctgat gataggcaat aagtgcagca gcacgttgaa gtctgtcagg aatatcgcca
     3301 cgaagttcgc tcggcagatg tgctgaaaga cgcgggtgga cttccatgga ccatctgcct
     3361 ccaacctcga caattgaaag agcactatcc cgcctacgac gatactggtt ctgcagcgta
     3421 gtcagagaat cgacaatcgc agactcagga tgcccagact gctcagatat ctcggaggat
     3481 ttcaacgacc gaccagagca gaacaacaat gcctctacga tggattcgat ggatggatca
     3541 gtcatgcctc tacctcctca agggtaatcc cacgctcacg agcaatagcg actcgtgctt
     3601 cgtcaaacgt ctcaactttc ggccaacggt cccgaaggaa gatacgccct tgattcgctt
     3661 cacccatctg ccatatttcc gcgaatccac ggtgtgttag gaataaggat gcgacaaatc
     3721 ctgaaatctc gccctccgct tccgcttcat cttccgatgc gccttcttcg acagcgattg
     3781 aggaaaggta ggtacgaaca tcagcaagtt cgacaggtga accatccctc ccaagtttcc
     3841 gtaatgctga ccagcaacgc tgtatatcct cctctaggtt ctcacgatgc atcctcgatg
     3901 atacgtttgc catagcctcc tcgacgtcca cctggtggcg aatccgagca gcttccctta
     3961 atcgacgatc ttcagcctga tcgtgtgctg ccttgagtga gaataacatc
//
LOCUS       DUKB01000199            5281 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_34315, whole genome shotgun sequence.
ACCESSION   DUKB01000199 DUKB01000000
VERSION     DUKB01000199.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5281)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5281)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5281
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_34315"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            31..4383
                     /locus_tag="HA345_06715"
     CDS             31..4383
                     /locus_tag="HA345_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85086.1"
                     /translation="MSGDLSITSGMSPLVEGAQIGYRIDGGSLSVPSDSSLHCSDSAI
                     ACLSLASTSINVPLVEAVNSSAIVLLNPGGNLTALELIGDDIGIGVQIHGGANLSVTN
                     LNLTDANVGVSQTGAADTRIGSIHLTGENGIVVDWASSSGGVIDNIATTSGGTVREAI
                     HAEGVIDGFVANVTVAGSGTHPALHLGVDGTINIYSFTGTGFAEGVMLRGSGTANLDG
                     VDLSVSDRLIDTIGAATLHLSNSDWVTAGKFGTLASTSSILIGVNMTGTSTVEDGLEL
                     ITGNHQLEDVLLERPYIASDRVSTGLRCIWSESDLTSVQLIGWYRGAVLEQDAHVTAQ
                     SLNISGGGRDGGASVVVDGGSFQATSLHTEDADHGIEVLNGTSLWDDGPSVHIDQWTA
                     ADHRDITLLMSDETSVTVRNLPTFQTTSAYDAFGDGYLLWGGPSSGRVSVSGSHHLIE
                     HGLTVQDLGGQVVFGAEVESLGFNTTSAIDGSVTLPIFETGHTTVTATSGGIGTTQMT
                     DSSSGIIQIPLLPTSGDWRITTGNTAILQGGNFTIPGDLIIESGAALHLVGATLMLNS
                     NAFYTSEGGQLFGAEGSITGGTGSHGSVFSPLAYSGDLTVDQLVEVNCTENATADGNF
                     LSTLTIGSGCTLTVHGSVNGDVILSTGASVLVESPIRVRILDRGFPVEGATVIVGALQ
                     MNTASDGTAEGSVVSARYEEIESVITGTVTIVVRQQGIESLRSWDTSGPFDEDISVST
                     LDAGTLTGWTRIEPQFSPVHLLGDLVVPAGVTLQILPQASLRIGSSMTVDIQGNLDAE
                     DATITGYDWLSLRISGDAMIRGTQITGGPIDVASDGVLTVIDSLLNAAPIDSTGSSQV
                     IVQSSRLLGSSTCLSGMDQSVLNVQDTTFESCHQQGILAFGSIVEFTDITLAPGNGRG
                     IWLQSANGNVTNLESTEHTGKAALLLEDVGDLRVRGGTFNASLEPALISQYTDSLDIV
                     GGNIIASTGVMLEESSGIMEAMSFDGGGTGAVGLRVDGSTSRLLTLRNLSFHGWAHGI
                     ELIGDKDDLENPAVRIEECNIDTIESISSVSLPFLATSTTLTGSVNVSTTAFSFEAAL
                     ISSMPAGGIEVIDPATVRIAEERRIILQDQSGNALDSGLIEYYLPEFHSSLPAQSAIV
                     ENGDSIILYHRVMTQDFDLTYPQVQLDSTAGGYLSEINSVEVGDGMSSDIVIQMDTNT
                     VPTITITQPANGQVTYLGDALLIEVQVTDPDVIQASALMVTYEISEEGSSDSQQIGSE
                     TGFAHPYAILSNTVYPTELGTYVLTVSVRDPAGGVATDSIIFQVWPQDNDNDFIDTCQ
                     TTGDYAWYDPVEEVRCGPDEYDEDDDNDGMRDTLDSFPNDPCAWQDTDQDGNPDEIVD
                     SCTTDLIADDDDDDDGILDQDDSDPKVPLTVSESTSEDPLIVTLLSPGVILPLLVVVV
                     ATALLARQRRNSDG"
     gene            4392..4967
                     /locus_tag="HA345_06720"
     CDS             4392..4967
                     /locus_tag="HA345_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85087.1"
                     /translation="MSEIFETFDDTTSIVGFGAIALVSIIVVIDTFRYFMMEREVPRL
                     GALPNGGWAWSTTIRYEYERNWANVITLIVMGLMPLLLNPILDIPPLQLFLFPLALFG
                     MLLLQIFPKRYAVTRDLLSADGFTFEWDRVVWRGWEGGRRIVLQRTGWWLFAPLPLGG
                     SPDDLEQAALRIEAAVTNRWEEIIELLQEEE"
     gene            5012..>5281
                     /locus_tag="HA345_06725"
     CDS             5012..>5281
                     /locus_tag="HA345_06725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="1-pyrroline-5-carboxylate dehydrogenase"
                     /protein_id="HIH85088.1"
                     /translation="MADYPDNEPILSYAPGSVERVELQEEMDRQMCEVVEIPCIINGV
                     EIFTGNTMPQVIPHKHGHVLANVHLAGPEEMEAACDAAVNAQKDWI"
BASE COUNT         1272 a         1203 c         1336 g         1470 t
ORIGIN      
        1 acaatcacac actcgcgggg gggattcgat gtgtccggtg atttgtccat tacctcaggg
       61 atgagccccc tcgttgaagg tgctcagata ggttaccgta tcgatggagg ctccctgtct
      121 gtcccttcgg attcgagttt acactgctca gattcagcga ttgcttgttt gagccttgct
      181 tcaacttcga tcaacgtccc tcttgttgag gctgtaaact cctccgccat cgtattgttg
      241 aatccaggcg gcaatctaac ggccttggaa ctaattggag acgatattgg cataggagtt
      301 cagattcacg gtggtgcaaa cctctcagta actaatctca atttgactga tgcgaatgta
      361 ggcgtatcac agactggagc tgcagatacg cggatcggct ctattcactt aaccggcgag
      421 aacggcatcg tcgttgattg ggcgtcatct tctggaggtg ttattgacaa catcgcgacc
      481 acatctggag gtacggtgcg ggaagcaatt cacgctgagg gcgtgattga tggcttcgtt
      541 gctaatgtaa cagtagcagg gtctggaaca caccccgctc ttcatcttgg cgtggatggc
      601 acgattaaca tctattcctt cactggaacc ggatttgcgg aaggtgtcat gctccgaggt
      661 tcgggaactg ctaacctcga tggagtggat ctttcggtat cagatcgatt aatcgacacg
      721 ataggggctg caacacttca tctcagtaat tcagattggg ttacggctgg taagtttgga
      781 actcttgcca gtacatcatc gattttgatt ggagtaaata tgacagggac atctactgta
      841 gaggacggtt tggaactcat tactggcaac catcagctag aggatgtgct tctagaacga
      901 ccatacattg catcagatcg tgtatctacg ggccttcgtt gcatatggtc tgaatcagac
      961 cttacatctg ttcagttgat tggatggtac cgtggagcgg ttctcgaaca ggatgcacat
     1021 gttacagccc agagtctcaa tatctctgga ggaggccggg atggtggtgc ttcagttgtg
     1081 gttgacggag gatccttcca agcgacatct cttcacacgg aggatgccga tcatggaatt
     1141 gaggttctga atggtacttc tctctgggat gatggcccat ctgttcacat cgatcaatgg
     1201 acggcggccg atcatcgtga cattacctta ttgatgtcag atgaaacctc tgtcacggta
     1261 cgaaatcttc ctacattcca gacaacttct gcgtacgatg catttggtga cggatatctt
     1321 ctctggggcg gcccaagttc gggacgagta tctgtatcgg gatcccatca tctgattgaa
     1381 catggcctta ctgtccagga cctcggtggg caggtcgtgt ttggtgcaga ggttgagagc
     1441 ctcggtttca atacgacctc agccattgac ggttcagtca cactccccat ttttgagacg
     1501 ggtcatacga cggttacggc aactagtgga gggattggaa caacacagat gaccgattcc
     1561 agttcaggca tcatccagat tcctttgcta cccactagtg gtgattggag aatcaccaca
     1621 ggtaacaccg ccatactcca aggtggaaac ttcactatac ctggtgatct aatcattgag
     1681 tccggggctg ctttgcacct agtcggtgct accttgatgt tgaattcgaa cgcattctat
     1741 acctcagaag gaggacaact attcggagcg gaagggtcga ttaccggtgg aactggtagt
     1801 cacggttctg tattttcccc actcgcttac agcggcgatc tcactgtgga tcagctggtt
     1861 gaagttaatt gtacagagaa tgcaacagcc gatggaaact tcctctcgac acttacaatc
     1921 ggatctggtt gcactcttac agttcatggt tcagttaacg gagatgtgat tttgtccacc
     1981 ggcgcgagtg ttctcgtgga gtcaccgatt cgtgtaagga ttcttgaccg aggctttccc
     2041 gttgaagggg cgacggtgat tgttggcgcc cttcagatga acactgctag tgatggaaca
     2101 gctgagggca gcgtagtatc tgcgagatat gaggaaattg agagtgtaat tacaggcacg
     2161 gtgacaatcg ttgttcgaca acaaggtatc gaatcccttc gttcatggga tacatcgggt
     2221 ccattcgatg aggatattag cgtttcaact cttgatgcag gaacccttac tggatggact
     2281 cgtatcgaac ctcagttctc accagttcat cttctcggag atcttgttgt ccctgctggt
     2341 gtgacgttgc agatcttacc ccaagcatct ctccgaatcg gctcttccat gactgtggac
     2401 attcaaggca atctggatgc agaggatgct acaattacag gctatgattg gctatctctg
     2461 cgcatctctg gcgatgctat gattcgtgga acccagatta ctggtggacc aatcgatgtt
     2521 gcctcagatg gtgtgttaac tgtcatcgat tcgttactaa acgcggctcc aattgattcg
     2581 acgggctcct ctcaagtgat tgttcagtca tctcgcttgc tgggatcctc aacctgcctt
     2641 tcgggtatgg atcagagtgt gcttaatgtt caggatacta ctttcgaatc gtgtcatcag
     2701 caagggattc ttgctttcgg atctatcgtc gaatttaccg atattacctt ggcacctggc
     2761 aatggacgag gtatctggtt acaatctgca aatgggaatg tgacgaatct cgaatcaact
     2821 gaacatacag gtaaggcagc gcttttactc gaagatgttg gtgatttacg tgttcgagga
     2881 ggcacgttta atgctagtct tgaaccagca ttaatctcac aatacactga ctctctcgat
     2941 attgtcggag gcaacataat cgcgagtacc ggagtaatgt tagaggaatc ttcaggcatt
     3001 atggaagcga tgagtttcga tggaggtggc acaggtgccg tcggcctccg tgttgacggt
     3061 tcgacttcac gtctgttgac tctacgaaac ctctctttcc acggatgggc gcatggaatc
     3121 gaattgattg gtgacaagga tgacctagag aatccagccg ttagaatcga ggaatgtaat
     3181 attgatacta ttgaatcaat cagtagtgtt agcctaccgt tcctcgcgac atcaacaact
     3241 ctaactggtt ctgtgaatgt ctccacgact gccttttctt tcgaagcagc cttgatttca
     3301 tctatgcctg caggtggaat tgaagtaatt gaccctgcaa cagtacgtat tgctgaagaa
     3361 cgccgaatta tccttcagga tcaatcaggt aatgcacttg attcaggtct tatcgagtat
     3421 tatctcccag agttccatag ttcattacca gcacaatctg ccattgttga gaatggtgat
     3481 tcaattattc tctatcatcg agtcatgact caagatttcg atctcacata tccgcaggtt
     3541 caacttgatt ccactgccgg gggttacctt tctgaaatca attcagtgga ggttggggat
     3601 gggatgtcat cggacattgt aatacagatg gatactaaca ccgtcccgac aattacgatt
     3661 actcaaccag ctaatggcca agtcacatat cttggagacg cactccttat cgaagtgcag
     3721 gtaacagatc ctgatgttat acaagcaagt gcattgatgg tcacatatga gatatcggag
     3781 gaaggaagtt cagattctca gcaaattgga agtgaaacag gattcgctca cccatatgcc
     3841 atcctatcta acacggttta tccaactgag ttaggcacct atgtccttac cgtgtcggtc
     3901 agggatcctg cagggggcgt cgctacagac tcaatcatct tccaagtatg gccacaggat
     3961 aacgacaatg atttcatcga tacttgtcag actactgggg attatgcctg gtatgatcct
     4021 gtggaagagg ttcgttgtgg accagatgag tatgatgagg acgacgataa cgatggaatg
     4081 cgcgacacac tcgattcctt cccgaatgat ccctgtgctt ggcaggacac tgatcaggac
     4141 ggaaatcccg atgaaatcgt tgactcttgc actacagatc ttatcgcgga tgatgatgat
     4201 gatgatgacg gaattttgga tcaagatgat tctgacccga aggttccctt gacggtgtct
     4261 gaaagcacat cagaagatcc tctcattgtg actttactat ctccaggagt gattctacct
     4321 cttctcgtag ttgtggttgc tactgcatta cttgcccgcc agcggcgaaa ttccgatggt
     4381 taggtgatgt gttgagcgag attttcgaga cattcgatga tactacttcg atcgttggct
     4441 ttggagctat tgccttggtc tcaataatcg ttgtaatcga cacattccgt tatttcatga
     4501 tggaacgaga ggtccctcgt cttggagcac ttccaaatgg gggttgggca tggtctacca
     4561 ctattcggta cgaatatgag cgaaattggg caaatgtgat cactcttatt gtgatgggtt
     4621 tgatgccttt actcctcaat cctattctcg atattccgcc attgcaatta ttcctcttcc
     4681 ctctagcttt gtttggaatg cttctcctcc aaattttccc gaaacggtat gcagtaacgc
     4741 gggatctgct atctgcagat ggtttcactt tcgaatggga tcgagttgtc tggagaggtt
     4801 gggaaggtgg ccgtcgaatt gtgcttcagc gcactggatg gtggttgttc gcccccttac
     4861 ctctcggcgg ctccccagat gaccttgagc aggctgctct tcggattgaa gctgcagtca
     4921 ctaatcgatg ggaggaaatc atcgaactcc tacaagaaga ggaatgaact cctctcgcaa
     4981 tcatcaaaga cggacccgag aagcctattc catggctgac taccccgaca acgaaccaat
     5041 cctctcctat gcccccggta gtgtggagcg agttgaacta caggaggaga tggatcgaca
     5101 gatgtgtgag gtagtggaaa taccctgtat catcaatgga gttgagattt ttacagggaa
     5161 cacaatgcct caagttattc ctcacaagca tggccatgtt ctcgctaatg tacatcttgc
     5221 tggaccggaa gagatggaag cggcttgcga tgctgctgtt aatgcgcaga aggattggat
     5281 t
//
LOCUS       DUKB01000200            2953 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_174349, whole genome shotgun sequence.
ACCESSION   DUKB01000200 DUKB01000000
VERSION     DUKB01000200.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2953)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2953)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2953
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_174349"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..583)
                     /locus_tag="HA345_06730"
     CDS             complement(<1..583)
                     /locus_tag="HA345_06730"
                     /inference="COORDINATES: protein motif:HMM:NF016817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase/aspartoacylase
                     family protein"
                     /protein_id="HIH85089.1"
                     /translation="MSDSSKRKSAKNKSSTKVSNQLPRSRRKKVEQALEDGVNPKGSP
                     RSKKKPKIHRFARSRVKVGTMRTIRFPLLETEMGDPWPVRVTVIHGSKPGPVLTLLGA
                     VHGDELIGPMALTHLLGTQFCGPDRPIDPENLAGTIRIVPVVNLPGYRMRSRYFPDGR
                     DLNRESPGSSKGNTTSRVAQRVFKNIIEGSDYVI"
     gene            717..1193
                     /locus_tag="HA345_06735"
     CDS             717..1193
                     /locus_tag="HA345_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002617618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HIH85090.1"
                     /translation="MTEPSVQETHAPTSICFGCGPANEEGLRIRSFHRKDVEHGLRMS
                     FVTEEHHQAFPGMVNGGIIGTLLDCHGNWTASMAIMESNQMQEAPCTVTANYSIQLRR
                     PTPSGEELTISSEVTDLQIDRATVKMELYAGGELCARGEGLFVAVKEGHPAYHRWS"
     gene            1203..1739
                     /locus_tag="HA345_06740"
     CDS             1203..1739
                     /locus_tag="HA345_06740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85091.1"
                     /translation="MSRSKLVHIREQVLPVMIDIGVINLTQADDLRMVPLGMIRRNAT
                     RMHAVCRYHPGPRGGDKGIDDVKEIAIHPVAIEDKWRDYAQFLMYHEMLHAIGHVRHD
                     RLFRDLEARWPDKNARESGPSFGRHLRQRAARWNWTCPRCEREHYRSRRSNGRYLCRV
                     CKVKLIDVPTGQTHDAES"
     gene            1749..>2953
                     /locus_tag="HA345_06745"
     CDS             1749..>2953
                     /locus_tag="HA345_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85092.1"
                     /translation="MAGRIRGVLLTMALILLLTPVTTTGELGPVDNRLNLTCSDEQTC
                     QLTNLMIGIDTISKQENGASPFSPEIIRLEFVMSPPQEGHALIPEILETLVIELEIEE
                     DPGTYLRPDLNIILALGPSTNEWTIQGQSENPMTEAEEYRLEDEALDLSNGRLLSPGD
                     LVQISLTFEIDRPVTWKLGLKGNSYVDIPVQWNLIPSQVDVDEPSSMSEPVSIEIGEN
                     VNGALIEADIDCFTFSAGERAEELRIHIEWSPMPAEIAVPIPQPQLTTTQGVRQPAPS
                     VQTTERGDIIESTLRWKLSERANLRICIEGEEGRFGIYSWIAEEILSGSAANEASDFE
                     LDANWPTGTGWVGAPEEIVGSQGAGGIVSLGLILFSLPPARWIFLRPAAFSWSKNIGL
                     PVALIFILIS"
BASE COUNT          796 a          718 c          730 g          709 t
ORIGIN      
        1 cgatgacata atctgaccct tcgattatat tcttgaaaac cctctgagcg actctagatg
       61 tggtgttccc cttcgacgat ccaggtgact ctcgattcag gtctcttcca tctggaaagt
      121 aacggctcct catacggtat ccaggtaggt tgacaacagg tacgattcgg atagttccag
      181 ctaaattctc tggatcgatt gggcgatctg gcccacagaa ttgtgttcct aagagatggg
      241 tcaacgccat tggaccaatg agctcgtctc catgaactgc accgagaagt gtcaacacag
      301 gacccggttt agaaccatga atcaccgtaa ctcgaaccgg ccatggatca cccatctctg
      361 tctccaacaa aggaaaacgt atcgtccgca ttgtgccgac tttgacccga ctgcgtgcga
      421 aacgatgtat ctttggcttc ttctttgaac gtggagaacc ctttggattg actccgtcct
      481 caagcgcctg ctcgaccttt ttcctacgac ttcgagggag ttggttagat accttggtgg
      541 aggatttgtt cttggcggac ttccgcttag acgagtccga caaaaccaga cctcaacatt
      601 tcggggaatc tgtgggtcct tgaacctatt agatggaaaa tgttcgaaac tttgcttaac
      661 tcgatgaaag gtatggaccc cgaacctcaa ggaccgtttg cagccattcc atagagatga
      721 cagagccctc ggttcaggaa actcatgcac caacctcaat ttgcttcggc tgtgggccgg
      781 caaacgaaga gggtttgagg atacgttctt ttcatcggaa agatgtagaa catggattgc
      841 ggatgtcctt cgttaccgag gaacatcatc aagcgtttcc gggcatggtc aatggaggaa
      901 ttatcggaac attgctcgat tgccatggaa actggactgc ctccatggca attatggaat
      961 ctaaccagat gcaggaggca ccgtgtactg tcactgcaaa ctacagcata caattgagac
     1021 gtccaacgcc atcgggagaa gaactcacca tcagcagcga agtcacagac ttgcaaattg
     1081 acagagcgac tgtcaagatg gagttgtatg caggaggaga attatgtgca cgtggagagg
     1141 ggctcttcgt cgccgtaaaa gaggggcatc ctgcatacca tcgttggtca tgaggcaaga
     1201 aaatgtcacg ctctaaactc gttcatattc gtgagcaagt gctccctgta atgatcgata
     1261 taggagtcat caatctaaca caggcggatg acttacgaat ggtaccgttg ggaatgattc
     1321 gcagaaatgc aacacgtatg catgctgttt gccgttatca tccaggaccc cgtggtggag
     1381 acaaaggcat cgatgatgtg aaagagattg caatccatcc cgtagcaatt gaagacaaat
     1441 ggcgggatta cgcgcagttc ctgatgtatc atgagatgct gcatgcaatt ggacatgtga
     1501 gacatgaccg tttattcaga gaccttgaag cacgttggcc agataagaat gcgcgagaat
     1561 ctgggccttc ctttggccga cacctacgcc aacgagcggc tcgatggaac tggacctgcc
     1621 cgcgttgtga acgagagcat tatcgctccc gtaggagtaa cgggaggtat ctatgcagag
     1681 tttgcaaagt gaaactcatc gatgtgccca cgggacaaac tcatgatgca gaatcttgac
     1741 cctagggcat ggcaggcagg attcgaggag tcctcctcac aatggccctt atcctactac
     1801 tgacgccagt tacgactact ggagaactcg ggccagtgga taatcgcctc aatctaacct
     1861 gctccgatga acaaacctgt cagcttacca acctcatgat aggtatagat acaatctcaa
     1921 aacaagaaaa cggggctagt cctttttctc ctgaaattat acgtttagaa ttcgtgatgt
     1981 ctcctccaca agagggacat gctctgattc cagagattct cgagaccctt gtaatcgaac
     2041 tcgagataga agaagacccc ggcacttatc tgcgacctga tctgaacatc atactcgcac
     2101 tagggccctc caccaatgaa tggacaattc aaggtcagtc cgagaaccca atgactgaag
     2161 cagaagaata ccgccttgaa gacgaagcgc ttgatctcag taacggccgg ttacttagtc
     2221 cgggcgatct cgtacagatt tcactaacct tcgaaatcga ccgcccagtc acatggaaac
     2281 tcggactgaa gggtaattcc tatgtcgata tcccagttca atggaatcta attccatcac
     2341 aggtagatgt agatgagcca agctcaatgt cggaaccggt gagcattgag attggtgaaa
     2401 acgtgaatgg agcattgatt gaggctgata tcgactgctt cacattctct gcaggtgaac
     2461 gtgctgagga actcaggatc cacatcgaat ggagtcctat gccagcagaa attgctgtac
     2521 ccatacctca gccacaactc accacaaccc aaggtgttcg ccaaccggcc ccctcggttc
     2581 aaactacaga aagaggagac atcatcgaga gtacgttacg atggaaactc tctgaacggg
     2641 ctaatttgag aatctgtatc gaaggtgaag aaggacgctt tggcatctat tcatggattg
     2701 ccgaagagat actctcaggt tcagcagcga acgaagccag tgatttcgaa ctagatgcaa
     2761 attggcctac aggtacaggt tgggtagggg caccggagga aattgtaggg agtcaaggcg
     2821 caggtggcat cgtatccctt ggcctgatat tgttctcttt accacctgca aggtggattt
     2881 tccttcgccc agctgctttc tcttggtcga agaacatcgg cctgcctgtt gcactgatat
     2941 tcatcttaat ctc
//
LOCUS       DUKB01000201            2591 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_312087, whole genome shotgun sequence.
ACCESSION   DUKB01000201 DUKB01000000
VERSION     DUKB01000201.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2591)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2591)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2591
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_312087"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="HA345_06750"
     CDS             <1..446
                     /locus_tag="HA345_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85093.1"
                     /translation="MVMGALSIVGGLMNIGTGQVMSFFSNDLSRMDVALVPTWFYSVS
                     GVIGILGGIGFLYGGYRMQKFEMIGQWITLGTLAVVTILQVSMAFLMPEEIFTGGQDL
                     SEFGMSNETIIMIGKLSTVGGAVCQGGFCGAVFALPLLVGNHGLR"
     gene            complement(447..1529)
                     /locus_tag="HA345_06755"
     CDS             complement(447..1529)
                     /locus_tag="HA345_06755"
                     /inference="COORDINATES: protein motif:HMM:NF025025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HIH85094.1"
                     /translation="MEMGSVCVLIPSVGNANELKVVLEGLKQQDHGGPIEVVVVGPGN
                     DPGREVAEKNGARFIDDGGVRTRADACNIGIKNTESEFVFFTDDDVIVPSNWISSLIR
                     WFNRTEVAGVGGPNFAPPQESTFWQRVIDVTFCSRWVTAGTNYGNRAKGDLEEVEQLP
                     GVNAAYRRTVLEEVGGFDQGAIGCEDAMLDHRIRAAGHRLWQDGSAIMWHRRRGPGRV
                     RKQIGNYGLVRILASHRHPEMRSWSHILVGLFPILAALGILAFFYGATMGGGNWDLWF
                     SIEGPWSIERLSFHGSLGLMGLYVAICWAGALLGTSPSRGPLTIFAAPLMTFLMHWSY
                     GRGVLEGWKRIRAGRLGFQIDDRTRS"
     gene            complement(1582..2295)
                     /locus_tag="HA345_06760"
     CDS             complement(1582..2295)
                     /locus_tag="HA345_06760"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012908.1,HMM:NF014767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85095.1"
                     /translation="MRTIVDVLSVIVEEARMKFSAEGLDISVVDASHVALIKMHVDAA
                     AFETWEASDTVLAIELTKLRDLLKLAGPDDLVDVSYDPNVGQVDIKVGEVDRSIRPID
                     HTLMNEPKVPELDLKSKVKISATKLNKALQAARLVGELVTLSLDPKQFNLHVQGDQDS
                     VSVTHEAGQLEDLVAEAPVKSTYSTTYLQPIVKAIDGSVQSLEVCFDDKYPLNLNFEI
                     ADGAGRVTYFLAPRIEDTV"
     gene            complement(2412..2537)
                     /locus_tag="HA345_06765"
     CDS             complement(2412..2537)
                     /locus_tag="HA345_06765"
                     /inference="COORDINATES: protein motif:HMM:NF013277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85096.1"
                     /translation="MCPKCDCQRIYVELRQTRSSDEPETKIGTCADCGHKFREYA"
BASE COUNT          603 a          657 c          653 g          678 t
ORIGIN      
        1 ccatggtgat gggtgcactt tcaattgttg gtggccttat gaatatcggt actggccaag
       61 taatgagttt cttctctaat gatctaagta ggatggatgt tgcactcgtc cctacatggt
      121 tttactcggt atccggtgta atagggattc tcggcgggat cggattcctc tatgggggtt
      181 atcgaatgca gaagttcgaa atgattgggc aatggataac tctagggacg cttgctgttg
      241 taaccatatt acaggtatcg atggcctttc tcatgcccga agagatcttt acgggtgggc
      301 aagacctcag tgaatttggt atgtctaacg agacaatcat catgattggg aagttgagca
      361 cagtaggtgg agccgtgtgt caagggggtt tctgtggggc cgtatttgcc ctcccattac
      421 tcgtaggaaa tcatgggctc cgatgattac gatcgggttc ggtcatcaat ctggaatcct
      481 aatcgtcctg ctcgaattcg cttccacccc tcgaggacac cacgtccata cgaccagtgc
      541 attaggaaag tcatcaatgg agctgcgaag atagtcagtg gtccgcgaga aggtgaagtg
      601 cctaggagtg cccccgccca gcatatcgcg acatagaggc ccattaggcc gagagacccg
      661 tggaaggaga ggcgttcaat cgaccaaggt ccctcaatac tgaaccagag atcccagttg
      721 cctcctccca tggttgcacc gtaaaaaaat gcgagaatac ctaaggctgc gaggataggg
      781 aataggccaa cgagtatatg ggaccaagat cgcatttctg gatgtcgatg gctggcgagg
      841 attctaacta ggccgtagtt cccaatctgt ttacgcactc gtccaggtcc tcgacgtcgg
      901 tgccacataa ttgcagatcc gtcctgccat aaccgatggc ctgcagcacg gatacggtga
      961 tcgagcatcg cgtcctcaca accgattgca ccttgatcaa atcctcccac ttcttcgaga
     1021 acagttcggc gataggctgc attgactcca gggagttgtt ccacctcttc gagatcacct
     1081 ttcgctcgat ttccgtagtt ggttcctgcc gtaacccaac ggctgcagaa tgtcacatcg
     1141 atgactcgct gccagaatgt ggattcctgt ggaggagcga agtttggccc acctacgccc
     1201 gcgacttccg ttcgattgaa ccagcggatg agcgatgata tccaattaga tgggacaatg
     1261 acgtcgtcgt cagtgaagaa tacaaattca gattctgtat tctttatgcc gatgttgcaa
     1321 gcatcggccc ttgtacggac tcctccatca tcgatgaaac gcgcaccatt tttttccgca
     1381 acttcacgcc ccgggtcatt tccaggcccg actacgacta cctcaattgg gccaccgtga
     1441 tcctgttgtt tcaggccttc aaggacgacc ttcaactcgt ttgcattacc gacgctcgga
     1501 atcaggacac atacgctgcc catctccatg cccctcggac tccgaccttg ttcaagaccc
     1561 tcacgggtcg taggaggaga attagaccgt atcttcaata cgtggagcaa ggaaataggt
     1621 gaccctccct gctccatccg caatttcaaa attgaggttc agaggatatt tgtcatcaaa
     1681 gcagacctct aatgactgga cagatccgtc tattgctttg acaatgggtt gtaggtaggt
     1741 tgtgctgtag gttgatttca ccggtgcctc agcgacgagg tcttcgagct gtcctgcttc
     1801 atgagttaca gaaaccgaat cctgatcgcc ttgcacatgg agattgaatt gtttcgggtc
     1861 tagggatagg gttacgagtt caccaactaa acgagcagct tggagtgcct tgttcagttt
     1921 tgttgcacta atcttgacct tgctcttcaa gtcaagttca ggtacttttg gctcgttcat
     1981 gagtgtatga tcgatagggc gaattgagcg atcaacctca cctactttga tgtctacctg
     2041 tccaacattc gggtcgtaac tgacatcgac gaggtcgtcg ggacccgcga gcttgagcag
     2101 gtcacgtaac tttgtgagtt cgatggcaag tactgtgtcg ctagcttccc atgtctcaaa
     2161 tgctgctgca tcaacatgca ttttgatcag ggcaacatgg cttgcgtcta ccacactaat
     2221 gtcgagtccc tcggcggaga acttcatcct cgcttcctca acaatgacgc tcaggacgtc
     2281 gacaatagtg cgcatggttt cagggcgtga agtgaactgt agcatcttaa tcacctattg
     2341 gtcggtatcg agggtgctta aacgaggtcc aaaagggttc gtgggaatca acgctacttg
     2401 ttggagtgac atcatgcata ttcacggaac ttatgaccgc aatccgcaca agtgccaatc
     2461 tttgtttccg gctcatccga acttcgtgtt tgtcgaagtt cgacgtagat tctctggcag
     2521 tcacatttcg ggcacatgag ggacccttcc tgcaacacac cttgcccctc cgactcagca
     2581 atgacttcct t
//
LOCUS       DUKB01000202            3888 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_208709, whole genome shotgun sequence.
ACCESSION   DUKB01000202 DUKB01000000
VERSION     DUKB01000202.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3888)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3888)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3888
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_208709"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>2470
                     /locus_tag="HA345_06770"
     CDS             <1..>2470
                     /locus_tag="HA345_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85097.1"
                     /translation="FGSQPASTIDGAWDLSSEDGTYILMTSVGSSNLLTWNSLNTHAS
                     SASPMTPEYLWSSLSFGDVTATGTVGLYVDSNETLHLAIQDSVLWDVEVLRLYPDADR
                     DLIFDLVDDLPLLGNQWADSDGDGYGDNALGPLHDACETTNAPSSYYTYGCLDYDNDG
                     YADVDDACNDDPGESWIDRKGCDDYDQDGWSNNKFNYLDGDVFIFNWKLALDSDGDGY
                     GDNSSEGATTPDKFPTIPAAAVDTDNDGYPNNWTSLENGTNQAGLNIDNCPNIAGNST
                     TTINAEGAVIGYYGCIDTDGDGRDDFSDVFPQDPTQVADTDGDGWGDNPLGNDPDICP
                     DDFGYINGTDPDGVPGVGCPIPGEEPDDLDEDGVGDDLDDCNNTQAGQSVNEVGCSEY
                     QLDDDLDGVSNADDKCANTPANSGVDSDGCSSSQREVDSDGDGIYDPEDLCPNSDSEL
                     TIDDNGCTLSQKDSDNDGVNDLSDICPNTPTGATVLADGCADESCQYAVDCDGDGFLG
                     NYSYDTENETHSGDAFPFEVTQWQDLDGDGYGDNMIGENPDSCIGDAGNSTMKFQNGQ
                     TILHYGCIDTDGDGYSDDGDKFPLNPTQWADEDFDDWGDNPNGTDADQCLGTKSDSIS
                     IQQAKDNFGCSLSQSDTDGDSVTDDLDACPDTPAGAEVFQNGCKKESEAEPEEESDTV
                     MGMEPMIFFAVLGGGGILLIGVVLLILRSRNDDLDFDDDDDEDWFEDGDDNDDFMANI
                     LGGRGQSRNSQRGPASGPSRGPAGPGPSRGPPGVVPSRGPSRGPPGVVPRRGPAGPSP
                     SHGPPGAGPSRGPDPRGPARGPARG"
     assembly_gap    2471..2789
                     /estimated_length=319
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            2840..3070
                     /locus_tag="HA345_06775"
     CDS             2840..3070
                     /locus_tag="HA345_06775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85098.1"
                     /translation="MAKRKPITGDGKVRKAKVMIDPDLFDNDELADKNAAIDWTRSAL
                     KEGQSERSILMQLQTTGWSAPQSRAIIDLSKQ"
     gene            3133..>3888
                     /locus_tag="HA345_06780"
     CDS             3133..>3888
                     /locus_tag="HA345_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85099.1"
                     /translation="MSEDVADVSMPEGIEVDEAAAYFGVFESSDALHQMMEMPREKAF
                     ERFFLLLSDLVLKPGEFDFEEASERLNCEGGEIYFLVAGHLGVMTLPEQLALAISEGQ
                     FSESESTLLQEIADPMRLLKLFAIAQQTGGEGEATKYLKGVESLMSNPAANKDALLSL
                     ASEIQSAFDVAGHVTPIPSFASGDAEAKEVETGYEAPVSPASQNNLVTDNEVKTESVP
                     LPVPKPEVVVEQKEESVPLPSSEPVPLPKVEEPK"
BASE COUNT         1063 a          715 c          889 g          902 t
ORIGIN      
        1 atttggctca caacctgcat cgacgattga tggtgcatgg gacctctctt cagaagatgg
       61 aacatacatc ttgatgacaa gtgttggttc atcgaatctt ctcacttgga acagcctcaa
      121 tacacatgcc agttcagcat ctccaatgac tcctgaatat ctctggagca gtctctcctt
      181 tggcgatgtt acagctacag gtactgtcgg tctctatgtc gattccaatg aaacacttca
      241 ccttgcaatt caggacagcg tcctttggga tgtagaagtg ttgcgattgt atccagatgc
      301 agatagagac ctcattttcg acctcgtaga tgatttgcct ctgcttggaa atcagtgggc
      361 agacagtgat ggcgacggct atggagacaa cgcccttgga cctctacacg atgcttgtga
      421 aacgaccaac gcaccttcgt catactacac ctatggatgt ctggactacg ataacgatgg
      481 atacgctgat gtcgatgatg cttgtaatga cgatcctggc gaatcttgga ttgaccgaaa
      541 gggatgcgat gattacgacc aagacggatg gtcgaataac aaattcaact atcttgatgg
      601 tgatgttttc atctttaatt ggaaacttgc tttagacagt gatggtgacg gatatggaga
      661 taattcttca gaaggtgcaa caactccaga taaattccct acaatccctg cagccgcagt
      721 cgacacagac aatgatggtt atccaaataa ttggacttct ttagagaatg gaacaaatca
      781 agctggactc aatatagata attgtcctaa cattgctggt aattctacta ccacaatcaa
      841 tgcagaaggc gcagttattg gatactatgg ttgcatagac accgatggcg atggaagaga
      901 cgacttttca gatgtattcc cacaggaccc aacacaagtt gcggatactg atggtgatgg
      961 ttggggagat aatcctctag gaaatgatcc cgatatatgc cctgatgatt tcggctacat
     1021 caacggaaca gatccagatg gcgttccagg agtaggttgt cccattcccg gagaagagcc
     1081 tgatgattta gacgaggatg gagtgggcga tgatcttgat gattgtaaca atacacaagc
     1141 aggccaatcg gtgaatgaag ttggatgttc tgaataccaa cttgatgatg atttagatgg
     1201 tgtatcgaat gcagatgata agtgcgcaaa tactcctgct aactctggag ttgatagcga
     1261 tggctgttca agttcgcaaa gagaggttga ctctgatggg gatggaatat acgatccaga
     1321 agacctttgt ccaaattcag attctgagct tacaattgat gataacggat gtactctatc
     1381 tcagaaagat agcgataatg atggcgtaaa cgaccttagt gacatctgtc caaacacccc
     1441 aactggagct acagtacttg cagatggttg tgcagatgaa tcatgccaat atgcagttga
     1501 ttgtgatgga gatggattcc ttgggaatta ttcctatgat acagaaaatg aaactcacag
     1561 tggtgacgcg ttcccattcg aggtaactca atggcaagat ctggatggtg acggctatgg
     1621 agataatatg attggagaaa atcccgattc atgtatagga gatgctggta actcaacaat
     1681 gaaattccaa aacgggcaga caatccttca ctacggttgt atcgatacag atggtgacgg
     1741 atacagtgac gatggtgata aattcccact aaacccaacc caatgggcag acgaagattt
     1801 tgacgattgg ggagataatc ccaatggtac agatgcagac caatgccttg gcaccaaaag
     1861 tgacagcatc tctattcaac aagcaaagga taattttggt tgttcattgt ctcaatctga
     1921 tacagatgga gatagtgtaa ccgatgactt ggatgcttgt ccagatacac cagcaggtgc
     1981 tgaggtattc caaaatggat gtaagaaaga atccgaagca gaacccgagg aagaaagtga
     2041 tactgtaatg ggtatggagc caatgatctt cttcgcagtt cttggtggcg gaggaatcct
     2101 attgattgga gttgtattgt taatactacg ctcgagaaat gatgatctcg atttcgatga
     2161 tgatgatgac gaggattggt ttgaagatgg tgatgataat gatgacttca tggctaatat
     2221 tttaggaggg cgtggacaat ctagaaactc acaacgtgga cctgcttcgg gacctagtag
     2281 aggtccagca ggcccaggtc caagtcgcgg tccaccagga gtggttccta gtagaggtcc
     2341 aagtcgcggt ccgcctggag tagttcctcg cagaggtcca gcaggcccaa gcccaagcca
     2401 tggtccacct ggagcaggtc ctagcagagg ccctgatcca agagggccag caagaggacc
     2461 agcaagagga nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2701 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2761 nnnnnnnnnn nnnnnnnnnn nnnnnnnnng aggaccagca agaggaccag caacaattgg
     2821 ttcggcagca ggaaagaaag tggccaagag gaaaccgatc acaggtgatg gtaaggttcg
     2881 taaagccaag gtaatgatag atcccgattt attcgacaat gatgaattgg ctgataaaaa
     2941 tgcagccatt gattggacaa ggtccgctct aaaggaaggc caatcagaga ggtcaatctt
     3001 gatgcaactt cagacgacag gctggtctgc tcctcaatcc agagcaatta ttgacctttc
     3061 aaagcaatga tagttaacag gcatcacact caagaaggtt agtcaattcg gggaagttac
     3121 gggggttgga atttgagtga agatgtagca gatgtctcga tgccagaggg tattgaagta
     3181 gacgaagcag ctgcatattt cggagtattc gaatcttctg atgctttaca tcaaatgatg
     3241 gaaatgccaa gagaaaaagc ctttgagaga ttctttctat tactctcaga tctagtgttg
     3301 aaacccggtg aattcgactt tgaagaagcc agtgaaaggt tgaattgtga agggggggaa
     3361 atctacttcc tggttgctgg acatcttgga gtaatgactc taccagagca attggctctt
     3421 gccattagtg aagggcagtt ttcagaatca gaatctacct tactgcaaga aattgcagat
     3481 cctatgcgtc ttctcaagtt attcgctatc gctcaacaaa caggtggtga aggcgaggcg
     3541 acaaagtatc tcaagggtgt agaatcattg atgtctaatc cagcagcaaa caaagatgca
     3601 ttgctgtcct tagcttctga aattcaatca gcattcgatg tcgctggtca tgttactcca
     3661 atacccagtt ttgcaagcgg agatgctgaa gcgaaagaag tagaaactgg ttatgaagca
     3721 ccagtttcac ccgcctctca aaacaattta gttactgata atgaagtaaa aacagagtct
     3781 gtaccattac ccgttccaaa accagaagtg gttgtcgaac aaaaagaaga atcagtacct
     3841 cttccttcta gtgaaccagt ccctcttcca aaggttgagg agcctaag
//
LOCUS       DUKB01000203            3707 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_171459, whole genome shotgun sequence.
ACCESSION   DUKB01000203 DUKB01000000
VERSION     DUKB01000203.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_171459"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="HA345_06785"
     CDS             complement(<1..424)
                     /locus_tag="HA345_06785"
                     /inference="COORDINATES: protein motif:HMM:NF014502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HIH85100.1"
                     /translation="MWEYLLLSAVTGLAALKLSLILYRRRTYPEPHYDWDQIDTDSLS
                     FPDGFYWGSATAAHQVEGNLTNNWSAHEERKNLERSGAACDHWNRWKDDFQMMSDLGL
                     NSYRFSIEWSRLEPEPGEWNVKALEVYSDMIDDLIDRGI"
     gene            423..923
                     /locus_tag="HA345_06790"
     CDS             423..923
                     /locus_tag="HA345_06790"
                     /inference="COORDINATES: protein motif:HMM:NF025178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HIH85101.1"
                     /translation="MGWLTRRLVLEVRFTHNLAYYTTRIDTLEDQILTMSDTALPMEG
                     SQSQWKRVMKSAKLKMGKKKMKNIGLTSIMLIRTENGLHATGALCRHMWWPLAYGGKV
                     KDGCVRCPLHQSTYHLEDGGVKEWSPFPLFPLYGRLLAKMRKKRPLQIHNVREIDGWI
                     EVRLAC"
     gene            988..2586
                     /gene="crtI"
                     /locus_tag="HA345_06795"
     CDS             988..2586
                     /gene="crtI"
                     /locus_tag="HA345_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013579253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytoene desaturase"
                     /protein_id="HIH85102.1"
                     /translation="MKERSPTALIVGAGPGGLASALLLQHSGVDVTIVEKADVVGGRT
                     RIVEHDGFKFDRGPTFFHYPEVIEEIFQAIGRDAHEELGLMPLDPSYRLVYGAGGSID
                     ATSDLDKMTERIRELAGDKNAAGFERYVKENRRKLNTSKDCLQTPWSGPHNLFSKRAL
                     RVATVLKPWSNVASDLARLFDDERVRLAMSFQTKYLGMSPFHAPSLFTILAFLEYEHG
                     IFHAKGGLGSITVRMAEIAEEMGVDIRLNHTVDELIFEGKTVKGVRIGEELLLADKVV
                     VNADFAHAMTTMVPDEKRRKWTNKKLAKKSYSCSTFMLYLGVDKLYDLPHHQIYASKS
                     YEQSLKDITEFKVPWGDPSFYVQNACITDPSLAPEGCSTIYVLVPVPNTNDNIVWDDI
                     KDQFRDLIVKQMEKLGLENLEDHIISETVVTPDDWGNSDIYRGAVFNLAHGLDQMLWR
                     RPQNRFEEFNNVYLVGGGTHPGSGLPTIFESARISSKMLLADVGIKPDWNGVDTWFPG
                     QRHPLGRRKAAKIRSGKDGVSTPQ"
     gene            2591..3205
                     /locus_tag="HA345_06800"
     CDS             2591..3205
                     /locus_tag="HA345_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85103.1"
                     /translation="MKTLAIALLIVGSMMSGCLDWSPTEDIPVEISEESRYSFQAETL
                     NRTVDEGPVLTLHEHANGAPTLLIWVSPACGGCHDWVQDLIQDEVHTQIAEDGVRIVS
                     VHRYFQFEDVAEVMQQYGNESSDSYSPWPVVVPNDDVRAIDLSTGMISDIGIIEAFGT
                     PGTPTLQLIDGDGKMAWESDSYYFDEEEVQEMVGVIEELTKSGE"
     gene            3211..3654
                     /locus_tag="HA345_06805"
     CDS             3211..3654
                     /locus_tag="HA345_06805"
                     /inference="COORDINATES: protein motif:HMM:NF025473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4281 domain-containing protein"
                     /protein_id="HIH85104.1"
                     /translation="MEPLNISLFMLSTIWVGPFWMLMLVEPFSERTETWLKGNMLFLG
                     PLGVWLLATVLNPSGLLDLFTGNPLEFFDTMVSLLGTETGTVLAWAHFVAGDIMATRW
                     MWRKGIENQIGINRIRIIVFFGVMLMPVGLLLHVILNRESTANTE"
BASE COUNT         1018 a          836 c          899 g          954 t
ORIGIN      
        1 taattcctcg atcaatcaaa tcgtcgatca tatcagaata gacctctaat gccttcacgt
       61 tccattcacc tggttcaggt tccaaacggc tccattcaat cgagaaccga tacgaattga
      121 ggcctaaatc gctcatcatc tggaaatcat ctttccatcg attccagtgg tcgcaagctg
      181 ctccacttct ttccaaattc ttccgctctt catgggcgga ccaattgttg gtgagatttc
      241 cttcgacttg gtgtgcagcc gttgcggaac cccaatagaa accatcaggg aaggataggg
      301 aatctgtatc gatctgatcc caatcatagt gtggttcagg ataggttcgt cgtcgataga
      361 gaatcaggga gagtttgaga gctgcaagac cagtcactgc agagagaagc aggtactccc
      421 acatgggctg gctcactcgg cggttagtat tggaggttcg tttcactcac aaccttgcat
      481 attacacaac acgtattgat acgctagaag atcaaatact caccatgtcc gatactgctc
      541 tgcctatgga aggaagtcaa tcacaatgga aacgtgtgat gaaaagcgcg aaactgaaga
      601 tgggtaagaa gaaaatgaag aacatcgggc taactagtat catgctcatt cgtaccgaaa
      661 atggactcca tgcaactggt gcactctgcc gtcacatgtg gtggccactc gcctacggtg
      721 gtaaagtgaa ggatggatgt gtgcgttgtc cactgcatca gtcaacctat cacctcgaag
      781 atgggggtgt caaagaatgg tctccattcc ctcttttccc attatatggt cgcctcctag
      841 caaaaatgag gaagaagcgt ccacttcaaa ttcacaatgt acgagaaatc gatggatgga
      901 ttgaggttcg tctcgcgtgt tgagtgaaga ttcgggtaac ggaaaaaaac gcccgcttat
      961 atccgtgcag gacgtcggta ttacatgatg aaggagagga gccctactgc gttgattgtt
     1021 ggcgccggac caggagggct tgcaagtgct ctacttctcc aacattcagg tgtagatgtc
     1081 accatagtcg agaaagcaga tgttgttggt ggtcgcacaa gaattgttga gcatgatggt
     1141 ttcaaattcg accgcggacc aaccttcttc cactacccgg aagtgattga ggaaatcttc
     1201 caagcaattg gccgggatgc tcacgaagag cttggcctta tgccactcga tccatcgtac
     1261 cgactcgtct acggagcagg tggatcaatc gatgccacaa gcgacttaga caaaatgaca
     1321 gaacgtattc gtgagttagc cggagacaag aatgctgccg gttttgagag gtatgtcaag
     1381 gaaaaccgac gtaagttaaa cacatccaaa gattgtcttc aaaccccatg gagtggccct
     1441 cacaacctgt tctcaaaaag agcgctacga gttgcaaccg tgctcaaacc ttggtcgaat
     1501 gtagccagcg atcttgctcg tctcttcgat gacgaacgag ttcgccttgc gatgtctttc
     1561 caaacgaaat accttggaat gtcaccattc catgctcctt cactattcac catacttgcc
     1621 ttcttggaat acgaacacgg aatcttccac gctaagggtg gcctcgggtc gattactgtc
     1681 cgaatggcag aaattgcaga agaaatgggt gtagatattc gacttaatca cacggtggat
     1741 gaattaatct tcgaaggtaa aacagtcaag ggtgttcgaa ttggagaaga attactgctt
     1801 gctgacaagg tagtcgtaaa cgcggacttc gcacatgcca tgacaacaat ggtccctgac
     1861 gaaaaacgcc gtaagtggac gaataagaaa ctcgcaaaga aatcctattc atgttcaaca
     1921 ttcatgctct accttggagt tgacaaactc tacgacttac ctcatcacca aatttacgcc
     1981 tcgaagtcct atgagcagag cctcaaggat atcacagaat tcaaggtgcc ttggggtgat
     2041 ccttcattct atgttcagaa tgcctgcata actgacccga gtctcgcacc tgaaggatgt
     2101 tccacgatat acgtgctagt gccggtgcca aatacgaacg acaacatcgt ctgggatgat
     2161 atcaaagacc aattccgcga tcttatcgtc aaacagatgg aaaaactcgg cttggagaat
     2221 cttgaggacc acattatttc tgagaccgtg gtaacgcccg atgattgggg taattccgac
     2281 atttatcgtg gtgctgtatt caatctcgcg catggacttg atcaaatgct atggcgtcgc
     2341 cctcagaacc gttttgaaga attcaataat gtgtatcttg ttggaggggg aactcaccct
     2401 ggaagtggtc tgcctactat ctttgaaagt gcacgaatta gtagtaagat gctactagca
     2461 gatgttggaa tcaagccaga ctggaatggt gttgatactt ggttccctgg gcaacgtcac
     2521 cctctcggga ggcgaaaagc agcgaaaatt cgctcaggta aagatggggt ctcaaccccc
     2581 cagtgattgc atgaagacat tagcaatcgc cctcttgatt gtaggctcca tgatgagtgg
     2641 atgtctcgat tggtctccta cagaagatat tcctgtcgaa atctctgagg aatcgaggta
     2701 ctcatttcag gcggaaaccc tcaatcgaac ggttgacgaa gggccagtcc tgacattaca
     2761 cgaacatgcg aatggtgcac caacactgct tatctgggtc agtcctgcct gtggaggatg
     2821 tcatgattgg gtgcaggatc tgatacagga tgaagttcac acacaaatcg cagaggatgg
     2881 tgttcggatt gtttctgtcc atcgatattt tcaattcgag gatgtggccg aagtcatgca
     2941 acaatatggc aacgaatcaa gtgattctta cagtccatgg ccagtcgtcg taccaaacga
     3001 tgatgtccgc gcgattgatc tctcgacagg catgatctca gacataggta tcatcgaagc
     3061 ctttggtaca cctgggacgc cgacactaca gcttattgac ggcgatggaa aaatggcctg
     3121 ggaatctgat tcttactact ttgatgagga agaggtccaa gagatggtgg gcgtcatcga
     3181 agaattaacc aaatctggag aatgaataca atggaacccc tgaatatatc gctgtttatg
     3241 ttatcgacaa tatgggttgg ccccttctgg atgctaatgc tcgtagaacc attctctgaa
     3301 agaactgaaa cttggctaaa gggcaatatg ttgttcctcg gacctctcgg agtttggttg
     3361 cttgcgactg tattgaaccc aagtggacta ctggacttgt tcactggtaa cccgttagaa
     3421 ttcttcgata caatggtctc tttgcttggc acagaaaccg gtactgtact cgcttgggct
     3481 catttcgttg ctggagatat tatggccaca agatggatgt ggagaaaggg tatcgaaaat
     3541 caaatcggaa ttaatcgaat ccgaataatt gtgttctttg gtgtgatgtt gatgccagtt
     3601 ggactacttc ttcatgtaat tctcaatcga gaatcaactg caaatacaga atgatgactg
     3661 atcgattacg cagagggtac cccctgattc gtactacttg aatcagt
//
LOCUS       DUKB01000204            8593 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_345944, whole genome shotgun sequence.
ACCESSION   DUKB01000204 DUKB01000000
VERSION     DUKB01000204.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 8593)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 8593)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8593
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_345944"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..443)
                     /locus_tag="HA345_06810"
     CDS             complement(<1..443)
                     /locus_tag="HA345_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Ile2) 2-agmatinylcytidine synthetase"
                     /protein_id="HIH85105.1"
                     /translation="MPLFIGIDDTDHPNGGCTTWTSQVLAQLIEAAGAEILERRLVRL
                     WPFAPRRTRGNGAVCLVVDTDNTPSILEVVSSWFNSLLDELKKVDSSSHARPGLVVLK
                     EQYSDDAYWEAVRKEVAPSSLVGEMSNCLLYLHHPQGKDGLIGALA"
     gene            complement(449..1078)
                     /locus_tag="HA345_06815"
     CDS             complement(449..1078)
                     /locus_tag="HA345_06815"
                     /inference="COORDINATES: protein motif:HMM:TIGR01662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HIH85106.1"
                     /translation="MRAHRHRASLLDPLDLPKLPVAWVGRIAYLDRDGVINIGKETYV
                     NDVSEVEMLRGAGQAIGQLRRSGFRIVICTNQSPIGRGWWDHETLAKIHDYIQDKLLE
                     EDEDAYLDLILYSPYAPWLGAHARKGNPGMLEAGRQLIEAAESGLLLDDESFMDADAY
                     ASSDFDETSSVMVGDRSVDMEAADAFGVRGIQVDGAFGVASAIDSILMG"
     gene            complement(1086..1670)
                     /locus_tag="HA345_06820"
     CDS             complement(1086..1670)
                     /locus_tag="HA345_06820"
                     /inference="COORDINATES: protein motif:HMM:NF024969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HIH85107.1"
                     /translation="MDENTSFDGASFLHSYILDLKSALEAIDEDTVATLIRMVLDTRS
                     ADGSIHFLGNGGSAATPSHSAGDWSKEIGIRTIAHTDNTAMMTAFANDYGYDQIFIGS
                     LRTFLRPGDLVIGFSGSGNSPNVINGLEYAKANGGRTVGVTGNLNGAGAGQITDYADH
                     LVHFETESMERIEDLQLVLNHIVKESIKAMDALE"
     gene            1657..2688
                     /gene="artA"
                     /locus_tag="HA345_06825"
     CDS             1657..2688
                     /gene="artA"
                     /locus_tag="HA345_06825"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR04125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archaeosortase A"
                     /protein_id="HIH85108.1"
                     /translation="MFSSIICRCHRCLFTGWGKRTGVDDPIIEILHGLASALAIENSE
                     LKLLFGALGVILLGFGHFRASSKGSILAIIGWPMIGLHFYMDVPHYVEIQDPVLILMT
                     AAGLPLTIAVAVWDGRNISRGIEDEALIWARGAIALATGPYLIMAHVPIFNVIAVWIT
                     AWSANTFLAFSGHDGYVIGAMLVDTGTADVLWSEWEGNRWILTQQLGEAGFHTPLLDE
                     TSGQPSVSFVMACSAAQSMAVFIGALFAIRTAPWQRRMRALLVTVPTIFVLNTFRNAG
                     IVWLHTTYPQWDLLGITMFDFAHSYAAKAGSLFAMFLMALVLFDLLPEMHRHIMRLIK
                     PISDLRSAT"
     gene            complement(2663..5665)
                     /locus_tag="HA345_06830"
     CDS             complement(2663..5665)
                     /locus_tag="HA345_06830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85109.1"
                     /translation="MLIKEAENEIYHSDLDLPALEEFIQDMANDNVTMVHSRVKLPSP
                     LGMNLYISAFQDLLSMRTKAFLVKDIDPVILRRLLGKRSLHTDLNPERIDRYYTDKVP
                     APMSPDDLLRLMDVGGGLQEDSDHPLYVEKLSSVSPSTLRSWVEELAQAGRIMRIRGT
                     GSDQIDGKWFSKSMAGVHGTLGCLATAGASDMDNVRELYTGNLFFQATSSVNDSDWED
                     VGLSDPHECLRVKILDLLGSEGPKPADVLVERLPFPKRQIEVILHELEVRNLLSVGFY
                     KQTKDGEYILRVDEYKITGGKEDVIEARTIQNLLLDKSFSNCEDPLDVMRNHIMLSKQ
                     EELLYRSPDYRFGDWADIKHDSDVVMGRLLNNRIGYTLKEEIPLILGLRPPAWRGSNE
                     ERLLEMVPSDRNVERKELEVAFLRSYGSEQAEKGKRDFRNAIGNLDRSLSVAKQYKVV
                     PNRKRSLSLFHRVSDVYEPMSFEEALGIYVNRMGPIRLYTIRNNVTRAVEEIAETLRV
                     LEDKGIIEKVITLQPDPIEFYASPEDARRLRGYREEDRTLRILTQSDPYCSRFIQEIR
                     FVLRDGWYRPVFKGVDPIGRILMYKVNDYLEIKDIQVPHAYLDEFGTEFNRLLDNFRD
                     QLIDVSVLHNFNGQTIPEAPTEIQKLVESLGFIPMNDQRNRYIRGGVVATREKSIIHR
                     SLFKIHNLHQVTRKENEMKAVMEMDEVRDTIALRGRCEVMRADLDAMAAANQLHQGTN
                     LRRHLVWSSYDHFQRLLMIRNMPAPEELQDVLDAFTENTDPRAYMERYAMKRAEFRKL
                     IQPLLRSGYMVQDYRGGFKVVHAKPEYDVWEEKKSYLKDQILKYPVVSMKQMERLVGA
                     SFKPEEIAQVLHDMEDSGELVKGFLTVDSAEIQWGQPDLIEEGESLDPMRDFVMPPSD
                     PLLPYFSGLLRERFGFGSAYIVFHKEDAVAAFKANTRDDVFDITDFNGDPDTERQVLR
                     VMKEFAWEHNMPLVGRMFEKLKSRIASR"
     gene            complement(5666..7966)
                     /locus_tag="HA345_06835"
     CDS             complement(5666..7966)
                     /locus_tag="HA345_06835"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012492.1,HMM:NF012493.1,HMM:NF020083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HIH85110.1"
                     /translation="MEPVYATEPAETQDLLDSLCPPVRNWFKDKFPDFTDPQKLAIPA
                     LQRGDHLLLCSPTGSGKTLTAFLSIIDDLVRRSMEGTLEKAIHCVYISPIKALANDIQ
                     RNLIDPLREIKETYLPNRAQDIVVGLRTGDTPQSERQKMLRHPPHILITTPESLALAV
                     GSKRFRPILQNLRYMVVDEMHSMVPTKRGTHLALTLAHLDHTISKPVQRIGISATMEP
                     LSTVADFLVSSSSSIDTRPVQIAHVSGSRKLDLDIILPARDFNVRPLKEILDLNIPHI
                     RTLVEAHNTTLVFANTRKMTEVIVQKLRVAGVQGVEGHHGSMDKKIRLDVEQRLKRGE
                     LRCVVSSSSLEMGIDIGSVDMVVQVGSPGSIATALQRVGRAGHQVGGVPRARMLPTSP
                     HDLLELVALQNAILTGRMDQLRFPERCLDVVAQFLIGLVIQQEWDIDEAYELVVSSWP
                     YRELAYDDFIEVLDMLHEERRVWVDWEENIYSKRGFSQMIYYTNIGTISADNNYLVFT
                     QDGTLVGQLSSSFVQNLRGGDVFLLGGQTYRVHAINSTRVNVSPVTGHRPTVPSWTGE
                     AMSRTRELSDAVLEVLDQVARVVRIQKDPRQVFEQIYRLSSPVSNSLAEFLEEHLRET
                     FLVPTPHRILVEEIEGSMPTYVVTTCRGRAFNMALGNLFAALAEADEIKVVEASFDEN
                     GFLLKLTKEVNIGLVPGLLSEGNGREIIRKFLIDSQLFQKRFREVASRSMIIPRRIGA
                     DEVSPQQFQQKAEALLRKHRQMDSGD"
     gene            8171..>8593
                     /locus_tag="HA345_06840"
     CDS             8171..>8593
                     /locus_tag="HA345_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HIH85111.1"
                     /translation="MSENEDRVQTLMAMFKRRGVVRPAFELYGGVAGLFDYGPVGGRI
                     LRRTQEIWLHHWLRLGNIVEINSPTVTPHQVLEASGHVGAFNDHAVQCRSCEAVERAD
                     QLLEGHVKNPDALDATQLDAALSEYSIECPSCSANDWAG"
BASE COUNT         2263 a         2169 c         1930 g         2231 t
ORIGIN      
        1 gccaatgcac caatcaatcc atccttaccc tgtggatgat gaagatacaa tagacaatta
       61 ctcatttccc ccaccaagct tgagggagca acttcctttc gaactgcttc ccaatatgca
      121 tcatcagaat attgctcttt gagaacaact aatccaggac gagcatgaga cgaactgtcg
      181 actttcttca gttcatcaag aagcgaattg aaccaactac tcaccacttc aagaattgat
      241 ggcgtgttgt cggtatccac tactaagcaa acagctccat tacctcttgt tcttcttgga
      301 gcaaatggcc agagacgaac caatcgacgc tcaagaatct cagcacctgc cgcttcaata
      361 agttgggcaa gaacctgaga tgtccacgtc gtacatccac catttggatg atcagtgtca
      421 tcgattccga tgaagagggg catctatctc aacccatcaa aatggaatcg attgcagatg
      481 cgactccaaa ggctccatca acctgaatac cacgaactcc gaaggcatca gccgcctcca
      541 tgtcgacact tcgatctcct accatcacac tagatgtctc atcgaaatca gatgacgcat
      601 aagcatcggc atccatgaac gattcatcat caagtagtag accactctct gcagcctcaa
      661 ttaattgtcg acctgcttcc aacatccctg gatttccctt acgagcatga gcccccaacc
      721 atggagcgta cggactgtat agaatcaaat cgaggtaagc atcctcatcc tcttcaagca
      781 gtttgtcttg gatgtaatca tgaattttcg ctaatgtctc atgatcccac caaccacgac
      841 cgattggaga ttggtttgtg caaataacaa ttctgaagcc agatcggcga agttggccaa
      901 tcgcttggcc cgcacctctc agcatttcta cctcactgac atcattgaca tatgtctcct
      961 ttccaatatt gattacaccg tctcgatcca ggtaggcaat ccgaccgacc catgcaacag
     1021 gaagtttggg taaatcaaga ggatctagca aggacgcacg atgacggtgt gctctcattc
     1081 agacatcact ccaaggcgtc catcgctttg atggattcct tcacaatatg attcagcaca
     1141 agttgtagat cctcgatacg ctccatcgat tcggtttcaa agtgtacgag gtggtcggca
     1201 taatccgtaa tctgacctgc tccggcaccg ttcaaattac ccgttacacc aactgttcgg
     1261 ccgccattcg ctttcgcata ttcaagaccg ttgattacgt tgggagagtt accactcccg
     1321 ctaaatccga taacaagatc acccggccta aggaatgttc gaagagaacc aatgaagatc
     1381 tggtcatatc cgtagtcatt ggcaaacgca gtcatcatcg cagtattatc tgtatgagca
     1441 attgttcgga tgccgatctc cttagaccaa tctcccgcac tatgagatgg agttgcagca
     1501 ctaccgccat ttcctagaaa gtggatgcta ccatctgcgg atcgagtatc caaaaccatt
     1561 ctgatcaagg tagctacagt atcctcatca attgcctcaa gagcactctt gagatccaag
     1621 atgtaggagt gaaggaagct tgcaccatca aaggaggtgt tctcgtccat catctgccgc
     1681 tgtcatcgct gcttatttac aggttgggga aaacgcacag gtgtggatga cccgattatc
     1741 gagattcttc acggcctcgc ctccgcgtta gccattgaga actcggaact caaactcttg
     1801 tttggtgcac ttggagttat tctgcttggt tttggtcatt ttcgcgcctc atcaaaaggt
     1861 agtatcttgg ccatcatcgg ctggcccatg attggtttac acttttacat ggatgtccca
     1921 cattacgtcg aaattcaaga tccagtactt atcctaatga ctgctgctgg ccttcccctc
     1981 acaatcgcag tcgcagtctg ggatggacga aacatatctc gaggaattga agatgaagcc
     2041 ctgatatggg ccaggggagc tatcgctttg gcaacagggc cgtatctaat catggctcat
     2101 gtcccaattt tcaatgtgat agcggtatgg attacagcat ggagtgcaaa cacattcctt
     2161 gcattttctg gccacgatgg atatgttatc ggcgccatgc tagtagacac aggtactgcg
     2221 gatgtactct ggtccgagtg ggaaggtaat cgttggatac tcactcaaca actaggtgag
     2281 gctggattcc ataccccctt gttggatgag acatcaggtc aacctagtgt cagtttcgta
     2341 atggcctgtt cggcagcgca gtcgatggct gtattcattg gtgctctatt cgcaatccga
     2401 acggctccat ggcaacgcag aatgagagca cttcttgtga cggtccccac tatctttgtt
     2461 ctcaacacat tccggaatgc aggtatcgtc tggctccata ccacgtatcc tcagtgggac
     2521 ctcctcggca tcacaatgtt cgactttgca cactcatatg cagccaaggc tggttcctta
     2581 ttcgcaatgt tcctaatggc actcgttctt ttcgatctcc ttccagagat gcacagacac
     2641 atcatgcgac taatcaagcc tatcagcgac ttgcgatccg cgacttgagt ttctcgaaca
     2701 tacgcccaac aagaggcatg ttgtgttccc atgcgaactc tttcatcacg cgcagcacct
     2761 gtctctcagt atctggatca ccgttgaagt cagtgatgtc gaacacatcg tcgcgagtat
     2821 tagccttgaa cgcagcaact gcatcttcct tatggaagac gatgtaggca gaaccgaaac
     2881 caaacctctc tctaagcaac ccactgaagt aaggtaggag aggatctgaa ggaggcatga
     2941 cgaagtcccg catcggatcg agtgattcgc cctcttcaat caagtcaggc tgaccccact
     3001 gaatctctgc agaatctact gtaaggaacc ctttgacgag ctctccggag tcctccatat
     3061 catggagtac ttgggctatt tcctcaggct taaatgatgc accaaccaag cgttccatct
     3121 gcttcatgga aacaacaggg tatttcagaa tctgatcttt gagataggat ttcttttcct
     3181 cccacacatc gtattcaggt ttagcatgga ctactttgaa tccaccacga taatcttgca
     3241 ccatgtaacc tgaacgtaac agaggttgga tcaacttgcg gaattccgct ctcttcatcg
     3301 catatcgctc catgtaagca cgtggatctg tattctccgt gaaggcatca aggacgtcct
     3361 gaagttcctc aggagcaggc atattccgta tcattagcaa tcgttggaaa tgatcgtagg
     3421 acgaccaaac aagatgacga cgcagatttg ttccctgatg taattgatta gccgcagcca
     3481 tagcatcaag atcggccctc ataacctcac aacgaccccg taaggcgatt gtgtccctaa
     3541 cctcatccat ttccatgact gccttcatct cattctcttt ccgagtcacc tgatgcaaat
     3601 tatggatctt gaataatgaa cgatgaatga tactcttctc acgggtcgca accacgcctc
     3661 cgcggatgta tctgttacgc tgatcattca tcgggatgaa accgaggctt tctacgagtt
     3721 tctgaatctc agtcggagct tctggaatcg tttgaccatt gaagttatgg agaactgaaa
     3781 catcgattag ttgatccctg aagttatcca atagtcgatt gaactcagta ccaaactcat
     3841 ctaagtaagc atgaggtacc tgaatatcct tgatttcgag ataatcattc accttgtaca
     3901 tcagaatccg acctatcgga tcaacgcctt tgaacacagg cctgtaccaa ccgtcccgaa
     3961 gtacgaagcg aatctcctgg atgaagcgac tgcaatatgg atcactctgg gtgagaatac
     4021 ggagagtacg atcttcttca cggtaacctc gcaaccgtcg tgcatcctca ggtgaggcat
     4081 agaactcaat tgggtcaggt tgtagagtga tgactttctc gatgataccc ttgtcctcga
     4141 gtacacgtaa agtttcagca atctcctcga ctgcccttgt gacgttgttt ctaattgtat
     4201 agaggcgaat ggggcccata cgattgacgt atatccccaa tgcctcctcg aaagacatcg
     4261 gctcgtaaac gtcactcact cgatggaaca atgacaatga gcgcttcctg tttggcacca
     4321 ctttgtactg cttagctaca ctaagtgaac gatcaagatt accaattgca ttccggaagt
     4381 ctcgcttacc cttctctgcc tgctccgaac catatgacct caagaaggcg acttcgagtt
     4441 ccttacgctc cacattacga tcacttggta ccatctcaag cagacgttcc tcattggagc
     4501 cacgccatgc tggaggacgg agccccaaaa tcaacggaat ctcctccttc agagtgtatc
     4561 caatacggtt gttcaacaac cgacccatga ccacgtcaga atcgtgtttt atgtctgccc
     4621 aatctccgaa acgatagtct ggtgaacggt acagtaattc ctcttgcttc gaaagcatga
     4681 tgtgatttcg catcacgtca agtgggtctt cacagtttga gaatgacttg tccaatagga
     4741 ggttctgaat cgttcgtgcc tctatgacat cctccttacc ccctgtgatt ttgtattcat
     4801 caactcgtag gatgtattct ccatcctttg tctgcttgta gaagccgact gaaagtaagt
     4861 tgcgcacctc aagttcatgc agtataacct caatctgtct ctttggaaat ggaagtctct
     4921 caacgagaac gtcagccggc tttggaccct cagaaccaag gaggtcgagt atcttcacac
     4981 ggaggcactc atgagggtca ctaagtccca catcttccca atcagaatca ttcacgctcg
     5041 aagttgcctg gaagaagagg ttacctgtat acaactctcg gacgttgtcc atgtctgagg
     5101 ccccggcagt ggctaaacaa ccaagcgttc catgaactcc agccatggac tttgagaacc
     5161 atttgccatc aatttggtca ctaccagttc cacgaatcct cataattcgt cctgcttgag
     5221 ccagttcctc tacccaactt cggagagtag atggagaaac tgaactcagt ttttctacat
     5281 agagaggatg atccgaatcc tcctgaagac ctccgcctac atccatcaat cgtaacagat
     5341 catcggggct cattggagca ggtactttgt cagtatagta gcgatcgata cgctcaggat
     5401 tgagatctgt atgcaaagat ctctttccaa ggaggcgacg gagaataact ggatcgatgt
     5461 ctttgactag gaacgcctta gtcctcatag agaggagatc ttggaaggca gagatgtaca
     5521 gattcattcc gaggggagat ggaagcttta ctctagagtg gaccattgtg acattatcgt
     5581 tagccatatc ttggatgaat tcctcaagtg cgggcaagtc aagatcacta tggtaaattt
     5641 cattctctgc ctccttgatt agcaatcaat cgcctgaatc catctgccgg tgttttcgta
     5701 agagggcttc agccttctgt tggaattgtt gagggctaac ctcatcggct ccaatccggc
     5761 gtggaataat catacttcta gaggcaacct ctcggaagcg cttctggaat aattgtgaat
     5821 caatgaggaa tttacggata atctcacggc catttccttc gcttagaagg ccaggaacaa
     5881 gacctatgtt gacctcttta gtcagtttga gaaggaagcc gttttcatcg aacgatgctt
     5941 caacaacttt gatttcatca gcttcagcta aggcggcaaa gagattacca agcgccatgt
     6001 tgaacgctct accacggcat gttgtgacaa cataagtggg catactgccc tcaatttcct
     6061 caacaagaat acgatgtgga gtaggtacta ggaatgtctc acggagatgt tcctcaagga
     6121 actctgctag actgttagaa acaggcgaac tcaacctgta gatctgttca aacacttgcc
     6181 gcggatcctt ctggatacga acaactctag caacttgatc taggacttca agaacagcat
     6241 ctgaaagttc tcgtgtccga ctcatagcct cccctgtcca cgatggaact gtaggacgat
     6301 gcccggtgac tggactcaca ttcacacgtg ttgagttgat tgcgtggaca cggtaggttt
     6361 gtcctccaag aaggaaaaca tctccacctc ggaggttctg aacgaaagat gatgaaagct
     6421 gaccaacgag ggtaccatcc tgagtgaaaa ctaggtagtt attatctgca gaaattgtcc
     6481 cgatgttggt gtagtaaatc atctgactga atccacgctt tgagtaaata ttctcctccc
     6541 aatctaccca gacacgtcgc tcttcatgga gcatgtcaag tacctcgata aaatcgtcat
     6601 aagcaagttc tctgtaaggc catgaagaga cgacgagttc gtacgcctca tcgatatccc
     6661 actcttgttg aataacaagt ccaatgagga actgggctac cacatcgaga caacgttcag
     6721 ggaaacgaag ttgatccatt cgaccggtaa ggattgcatt ctgtagagcc accaattcaa
     6781 ggagatcgtg tggactcgta ggtagcattc gtgctcttgg cactccacct acctggtgac
     6841 ctgcccggcc aaccctctgc aaagcggttg cgatacttcc aggagaacca acttgaacta
     6901 ccatgtcgac agaaccgatg tctattccca tctcaaggct ggacgaagac acaacacaac
     6961 gaagttcacc gcgtttcaga cgctgctcca catccaagcg gattttcttg tccattgaac
     7021 catggtggcc ttcgacaccc tggacgccag ctaccctcaa cttctgaaca atcacctcag
     7081 tcatcttcct cgtgtttgca aatacaagtg tggtattgtg agcctcaacc aaagtccgaa
     7141 tgtgagggat attcagatcc agaatctcct tcagaggccg gacattgaaa tctcgtgctg
     7201 gtagaataat gtctaaatcg agttttcttg atcctgaaac gtgagcaatc tggaccgggc
     7261 gagtgtcgat agaactactc gatgagacga ggaaatctgc gactgtagac agtggttcca
     7321 tagttgcaga gatacctatt ctctgcacag gcttggaaat cgtatggtcc aaatgggcga
     7381 gagtaagggc gagatgagtc cccctctttg ttggaaccat ggaatgcatc tcatcaacaa
     7441 ccatgtacct cagattctga agaatcggtc tgaatcgctt agagccgact gctagggcaa
     7501 gtgattcagg agtagtaatg aggatatgag gaggatgcct gagcatcttc tgacgttccg
     7561 actgcggagt atctccagtt ctgagaccaa ctactatgtc ctgtgcccta ttggggagat
     7621 aggtctcctt aatctcccgt agaggatcaa tcagattgcg ttggatatca tttgccaacg
     7681 ccttaatcgg agagatgtaa acgcaatgga ttgctttctc cagagtgcct tccattgaac
     7741 gtcggacaag gtcatcgatt atgctcagga atgctgtcag agtctttcca cttccagtcg
     7801 gagaacagag gagaagatga tcgccacgct gaagagccgg tattgccaat ttctgagggt
     7861 ctgtgaaatc aggaaattta tccttgaacc aattcctaac gggagggcag agggaatcga
     7921 gtaaatcctg cgtttccgca ggctctgttg catatactgg ttccattgtt gattcctttt
     7981 ccaaatcggc gtctggacgg cacccgaacg aggttataac gctatccaaa cagattacaa
     8041 tttactcacc tattgaacat gaaaatttga gttgcaagtc atgccatacc tattatgaat
     8101 ccaaatgaga tggtcttgag gccattcagt gcgaaggatt gagaagcggc gtgccaagcg
     8161 atggataatc atgagtgaga acgaggacag ggtccagacc ctgatggcga tgttcaagcg
     8221 acgaggtgtc gttcgacccg cattcgaact atacggggga gtcgccggcc tattcgatta
     8281 cgggcccgtg ggtgggcgta tccttaggcg gactcaagaa atttggttac accactggct
     8341 tcgacttgga aacattgtcg agatcaatag tccaacagta acccctcacc aggtgcttga
     8401 agcgagtgga catgtgggtg cattcaacga tcatgctgtt cagtgtcgat catgtgaagc
     8461 cgtggaacgg gcagaccaac tgcttgaggg gcatgtgaaa aatccggatg cgttagatgc
     8521 gactcaactt gatgcagctc tctcagaata ttccattgaa tgcccatcct gttcagccaa
     8581 tgattgggct ggt
//
LOCUS       DUKB01000205            2975 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_73851, whole genome shotgun sequence.
ACCESSION   DUKB01000205 DUKB01000000
VERSION     DUKB01000205.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2975)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2975)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2975
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_73851"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..464
                     /locus_tag="HA345_06845"
     CDS             <1..464
                     /locus_tag="HA345_06845"
                     /inference="COORDINATES: protein motif:HMM:NF014305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85112.1"
                     /translation="GFAWWLRDAPPTDPLDEASIQQVENSVELVVDYILQEAPEGEII
                     VGGFSQGAAMALEIMQHSSIQSSVKGLILISGKVLRPHNVAKYLQKNPIPAVWMHGER
                     DEMVPMYQGLEVYDALMNAGCPLLDLRHAKGHMVDLSQKEKIVDWVTSITR"
     gene            complement(445..708)
                     /locus_tag="HA345_06850"
     CDS             complement(445..708)
                     /locus_tag="HA345_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007572582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin"
                     /protein_id="HIH85113.1"
                     /translation="MALSQLLASEEDFLLITTDVCWYCVRAKRTLEAKGLTYTEVDAH
                     QDRETHMEATVQTGWRTVPVIYDLRGDEPVFVGGSDELIELLK"
     gene            complement(739..1632)
                     /locus_tag="HA345_06855"
     CDS             complement(739..1632)
                     /locus_tag="HA345_06855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85114.1"
                     /translation="MAIILNLEPNDMKARAPTRIDLAGGWTDVPLYAAGFGGEVVNFA
                     INLHATATVATDDDGCLIASHRSTTPLGGGLGTTGAVNVAMIGAIDGGKSDPLEIAEN
                     AFQFEMKLGNTGGRQDQWAAALGGFNHLMFIGNDVEPLPIEPPMSAKNWLAKHLLLFD
                     SGLRHVSGDLHDSVWDRFKENDEDVHAGLLILRQAARTMAEGLNRDRRDSVVEALNRV
                     CEGVDLIDETIHAPFKTVVEPLLSTKHVMGWKAVGAGAGGCAILLVRPSAQDVVTQAC
                     TDAGWSRIEWDYDDEGLVIES"
     gene            complement(1617..>2975)
                     /locus_tag="HA345_06860"
     CDS             complement(1617..>2975)
                     /locus_tag="HA345_06860"
                     /inference="COORDINATES: protein motif:HMM:NF019368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85115.1"
                     /translation="PGVHVLHAIPGHASPSTLPDAPVSTEVDTGQLRAMENGHLRIEF
                     LPDGRFDLIDLATERRFPGIGRLEDVEDAGDAHDYSAGGHPGPQDTSMVLRVQPVDRR
                     LHDGDITRIQTTTMLQKSDEWCATAHIRVVWGVPAYFDPVTQSRSVELGTVVIDHFVS
                     LRLGANTVDVETWVDNQAEDHRLRMIVPTGMHLTHANVGSPFDVVRRPVLHPHDPTWH
                     QPLVPTQPMERFIAVEGTEDGRNEGGFALIAPGVNEYEVILSDDSDPGGYDIALTLVR
                     SVGWTSQAGFASRPSAADAIIAAPGAQCIGTSIVRWSLMPYTKAWSDADVHGAAERFS
                     TNAILHSAMKKPLPNGFFDEALTPGTIGRSMTHVRFDGDGPAPTLSCFKPSEDFGAMI
                     LRVYNPTETDWNGRIYSDIDLERVNECSMVENARKKKIDLKNGSFEASVPAGAIIQWR
                     LS"
BASE COUNT          688 a          755 c          756 g          776 t
ORIGIN      
        1 gaggttttgc ttggtggctt cgggatgcac cgcccactga tccgcttgat gaggcatcta
       61 tccaacaagt tgagaattcc gtcgagttag ttgtcgatta tattcttcaa gaagctcctg
      121 agggagagat cattgtagga ggcttctctc aaggggctgc tatggccctt gagattatgc
      181 aacactcctc tattcaatcc tctgttaaag gcctcattct catttctggc aaggttctca
      241 ggcctcataa tgtagcaaaa tatctgcaaa aaaatccgat tccagcagta tggatgcacg
      301 gggaacgtga tgagatggtc ccgatgtacc aaggtctgga agtatatgat gcgttaatga
      361 atgcaggttg cccgcttctt gaccttcgtc atgcaaaggg gcacatggta gatttgtcac
      421 agaaggaaaa aatcgttgat tgggttactt caataactcg atgagctcat cagaaccacc
      481 tacgaaaacg ggttcatcac cccttaggtc gtagattacg ggtacagttc tccatccagt
      541 ttggaccgtc gcttccatgt gtgtttcccg gtcttgatgg gcgtcgacct cggtgtatgt
      601 tagaccttta gcctccagag ttcgttttgc acggacacaa taccagcaga catcggtggt
      661 gattaggaga aagtcctcct cggatgcaag aagttggctg agagccatgc atggtcattg
      721 gttggatggt cttgaacttc acgactcgat gacaagtcct tcatcgtcgt agtcccattc
      781 aattcgtgac cacccagcat ccgtacaagc ctgagtaact acatcttgtg cacttggtcg
      841 aacaaggagg atggcacatc ctccagcgcc agctcctact gccttccaac ccatgacatg
      901 ttttgtagat agtaatggtt caacgactgt tttgaacggt gcatgtattg tttcatcaat
      961 gaggtctacc ccttcacata cccgattcaa ggcttcgact acactgtctc gtcggtctcg
     1021 attgagacct tctgccattg ttcgtgccgc ttgtcgaaga ataaggagtc ctgcgtggac
     1081 atcctcatca ttctccttga accggtccca gaccgaatcg tggagatctc ctgagacgtg
     1141 gcggaggccg gaatcgaata ggagcagatg tttggcaagc cagttctttg cactcattgg
     1201 aggttcaatt ggtagtggtt cgacgtcatt cccgatgaac atcaagtgat tgaaaccacc
     1261 taaggccgca gcccactgat cttgtcgtcc cccagtgttt cctagtttca tctcaaactg
     1321 gaatgcattc tctgcgattt ctagtggatc tgatttccca ccatcaattg caccaatcat
     1381 tgctacattg acagccccag tcgtacctag gccacctcca agtggagtag tgctcctgtg
     1441 actggcaatc aagcaaccgt cgtcatcagt ggccacagtt gcagtcgcgt ggagattaat
     1501 ggcgaagttg acaacttccc ccccgaatcc tgccgcatag agtggcacat ccgtccaacc
     1561 tcctgcgagg tcgattcttg ttggcgcgcg tgccttcata tcattcggct ccagattcag
     1621 gataatcgcc attgtatgat ggctccagcg ggaacactgg cctcaaagga accgttcttt
     1681 agatcgatct tctttttgcg ggcattttcg accatgctac attcattcac ccgttccaga
     1741 tcaatgtcag agtagattcg tccattccag tccgtctcgg ttggattgta tacgcgtaga
     1801 atcattgctc caaaatcttc ggacggtttg aaacaggaca gggtcggggc tggcccatct
     1861 ccatcgaatc gaacgtgagt catactgcgt ccaatagtcc ctggagtcaa tgcctcatca
     1921 aagaaaccgt ttggaagtgg ctttttcatc gctgaatgaa gtatggcatt tgtggagaaa
     1981 cgttcagccg ctccgtggac atcggcatca ctccatgcct tggtataggg catcaatgac
     2041 catcgcacga ttgatgttcc aatacattgt gcacccggcg cggcgataat cgcatcggca
     2101 gcactgggcc tagatgcgaa gccagcttgc gaagtccatc cgacggaacg gactagagtc
     2161 agagcaatat cgtaaccgcc cggatctgaa tcatcagaca gtataacctc gtattcgttt
     2221 actccgggtg caatgagtgc gaatcctcct tcattacgtc catcctcagt tccttcaaca
     2281 gcgatgaatc gttccatggg ttgcgttggt acgagtggct ggtgccacgt agggtcatgt
     2341 ggatgtagga ctggacgacg cactacatca aagggagaac caacgtttgc atgagtgaga
     2401 tgcattccag taggtacaat catgcggaga cggtggtctt cagcttgatt atccacccat
     2461 gtctcaacat cgacagtatt tgccccaagg cgaaggctga cgaagtggtc gataacaacg
     2521 gttccgagtt ctacgcttcg gctctgtgtt acggggtcga agtaggccgg gacgccccag
     2581 actacacgga tatgcgccgt agcacaccat tcgtcagatt tctgaagcat agtggtggtt
     2641 tgaattcgtg ttatgtctcc atcgtgaagg cgtcgatcta caggttgaac tcggaggacc
     2701 atcgaggtat cctgggggcc ggggtggcca cctgcactgt agtcgtgagc atcacccgca
     2761 tcctctacat cttccaatct gccgattcca ggaaaacgtc gttctgtagc gaggtcgatg
     2821 agatcgaagc gtccgtcagg gaggaactcg atgcgaaggt gtccgttttc cattgctcgg
     2881 agttgtccag tatctacctc tgtggaaacg ggggcatccg gtagtgtcga tggactagcg
     2941 tggcctggaa ttgcatgtag gacatggacc cccgg
//
LOCUS       DUKB01000206            2924 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_62149, whole genome shotgun sequence.
ACCESSION   DUKB01000206 DUKB01000000
VERSION     DUKB01000206.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2924)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2924)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_62149"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>639
                     /gene="glgP"
                     /locus_tag="HA345_06865"
     CDS             <1..>639
                     /gene="glgP"
                     /locus_tag="HA345_06865"
                     /inference="COORDINATES: protein motif:HMM:TIGR02094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HIH85116.1"
                     /translation="NAVSRLNAKVASEMFPGTKIHPITNGIHHRTWTSPATASLYDEH
                     IEGWRSEPNRISDAPSIPRDSLSKAREKNREALRKMVKERTGVELKPKLLTIGFARRF
                     ATYKRANLVFSDLERLRAIGAGRIQFVFSGKAHPRDEGGKALIRQIFEGAEELQNEIL
                     VAFLPDYSMEIGQVMTGGVDVWLNNPIRPMEASGTSGMKAAMNGVPNLSILDG"
     assembly_gap    640..956
                     /estimated_length=317
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <957..1224
                     /locus_tag="HA345_06870"
     CDS             <957..1224
                     /locus_tag="HA345_06870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glucan family phosphorylase"
                     /protein_id="HIH85117.1"
                     /translation="SILDGWWPEACIHGVNGWAIGDSEAERDDERDVKALYRILEQDV
                     LPVWENDREKWTHIMQASMAASTGFTGARMIRDYIGFYDQFRMD"
     gene            1193..2512
                     /locus_tag="HA345_06875"
     CDS             1193..2512
                     /locus_tag="HA345_06875"
                     /inference="COORDINATES: protein motif:HMM:NF014499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HIH85118.1"
                     /translation="MDSMINSGWIETMAQGKLERSLGILCHLTSLPEPYLSENGAIRF
                     LHHLQETGVSVWQMLPIHPPDPHGSPYASSSAFAGWELFLPQDEREITETEVTKFCEE
                     QGGWVEEYALFRVLKERFDEAPWTEWPEGCRTGTDCHLNGKEKLRFKEICEQQARFNH
                     AWMRFRKMATSMGIRLYGDIPFFVSHDSADVWSAPHRFYLDEGGKPTHVSGVPPDYFS
                     DTGQRWGTPLYRWESHHDENFDWWVRRMRRMFDLFDLVRIDHFRAFESAWSIPANHPT
                     AEYGQWETGPGDDLLKILKDTYPNGIIAEDLGIIPKTVENLRNRYEIPGMAVLQFSNE
                     DADNPHHPENHKENMVVYTGTHDNDTTVGWGEKPVELMIRNAMKSPAFLCIIPLQDVL
                     QLGSEARMNTPGTTERNWRWNFEWNDLNCHSVEWFTEIASESRPRTS"
     gene            complement(2507..2899)
                     /locus_tag="HA345_06880"
     CDS             complement(2507..2899)
                     /locus_tag="HA345_06880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85119.1"
                     /translation="MDVNATNHNSSAEVDDGSCEYLDDEPEPVPDNETNSTDPDPIVC
                     STDLCWDGSSRNSTDCSCPSEVANESDNENNTELEVPIDPGSEVEEDNNSDIEDESST
                     NQKRRPVLIVALVLVIIVSVTFMFFRRS"
BASE COUNT          730 a          628 c          641 g          608 t
ORIGIN      
        1 aatgctgttt cgaggcttaa tgcgaaagta gcctcagaga tgttccctgg tacaaagatt
       61 caccccatca cgaatggaat ccatcacagg acatggacga gccccgctac tgcatccctt
      121 tacgatgaac acatcgaggg atggcgtagt gaaccgaatc ggatctcaga tgcaccaagt
      181 atccccagag attctctatc taaagcacgc gagaagaata gggaagcact acgaaaaatg
      241 gtgaaggaac gcacaggcgt agaactcaaa cccaaactac tcaccatcgg tttcgcccgc
      301 cgatttgcga cctacaagag agcaaatctc gtattctcag atcttgaacg gctgcgcgcg
      361 attggtgccg gccgtattca gttcgttttc tcaggaaaag cgcatccgcg ggatgaagga
      421 ggtaaggccc ttattcgaca aatcttcgaa ggagcagagg aactacagaa tgagattcta
      481 gtcgccttcc tcccggatta ttcgatggag attggccagg taatgactgg cggagtagat
      541 gtatggctca acaatccaat tcggccaatg gaggcctctg gaacaagtgg aatgaaggct
      601 gccatgaatg gtgttccaaa cctcagcatc ctcgatggan nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnncagc
      961 atcctcgatg gatggtggcc cgaggcatgc atacacggcg tcaatggctg ggctatcgga
     1021 gattctgaag ccgaacgtga cgatgagcgg gacgtgaagg cactgtatcg gatccttgaa
     1081 caagatgtcc tcccagtttg ggagaacgat cgagaaaaat ggacccacat aatgcaggcc
     1141 tcaatggccg ctagtacggg attcactgga gcaagaatga ttcgggatta cattggattc
     1201 tatgatcaat tcaggatgga ttgagacgat ggctcaaggg aaattagagc gaagcctcgg
     1261 aatcctctgt catttgacta gtcttcctga accataccta agtgagaacg gcgcgattcg
     1321 attcctccat cacctccaag agaccggtgt atcggtctgg cagatgctcc ccatccatcc
     1381 tcccgatcca catgggtcac cttatgcatc atcgtctgcc ttcgctggct gggaattatt
     1441 tctaccccaa gatgaaagag agattacaga aacggaggtc actaaattct gtgaggaaca
     1501 aggtggatgg gtagaggaat acgcgctttt ccgagtccta aaggaacgat tcgatgaggc
     1561 accatggacc gaatggcctg aaggatgccg gactggaact gattgccatt tgaatggaaa
     1621 agagaaactt cgtttcaaag aaatctgtga acaacaggcc cgcttcaatc acgcatggat
     1681 gaggtttcgg aaaatggcca catctatggg aatccgcctt tatggagaca tcccgttctt
     1741 tgtctctcac gactcagctg atgtctggtc agccccccat cggttctacc ttgacgaggg
     1801 gggaaaaccc acacacgtct caggtgtccc acctgattac ttctctgata ctgggcaacg
     1861 ctggggcacc ccattgtacc gatgggagag ccatcatgac gaaaatttcg attggtgggt
     1921 gaggcgtatg aggcgaatgt tcgacctttt tgatcttgtt cgaatcgacc attttcgtgc
     1981 ctttgaatca gcatggtcga ttccagccaa tcatcccact gccgaatatg gtcaatggga
     2041 aactggacct ggtgacgatc tactcaagat cctcaaagat acatacccaa acgggattat
     2101 cgcagaagac ctaggcatca tcccaaaaac agtagagaat ctacggaatc gatacgagat
     2161 tccaggtatg gcagttcttc aattctcaaa cgaagatgct gacaacccac accatcctga
     2221 gaaccataaa gaaaacatgg tagtatacac aggtacacac gataatgata ccacagttgg
     2281 atggggtgaa aagcccgttg aattgatgat acggaatgcg atgaaatccc ctgctttcct
     2341 ctgcataata cccctacagg acgtgctaca acttggttca gaagcacgta tgaacactcc
     2401 cggtacgaca gaacgtaatt ggagatggaa ctttgaatgg aatgatttga actgtcactc
     2461 tgtcgaatgg ttcacagaga tcgcatctga atcaagacct agaacatcat gaacgacgga
     2521 aaaacatgaa tgttacagag acaatgataa cgaggactag ggcaacgatt agcaccggtc
     2581 gacgtttttg attcgttgaa gattcatctt caatatctga attgttatcc tcttcgacct
     2641 cagaaccggg gtcaatgggc acctccaact cagtattatt ctcattatcc gattcattcg
     2701 ccacttcaga tggacaggaa caatcggttg aatttcgact agagccgtcc cagcacaaat
     2761 ccgtcgagca tacaattggg tctggatctg tactattcgt ctcgttatca ggcaccggtt
     2821 ctggctcatc atctaggtac tcgcaagacc cgtcgtcaac ctctgcggaa gaattgtggt
     2881 tagtggcatt gacatccatg cagcctccga ttggatctgg aacg
//
LOCUS       DUKB01000207            4902 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_141335, whole genome shotgun sequence.
ACCESSION   DUKB01000207 DUKB01000000
VERSION     DUKB01000207.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4902)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4902)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4902
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_141335"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..>417
                     /locus_tag="HA345_06885"
     CDS             <1..>417
                     /locus_tag="HA345_06885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006192930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HIH85120.1"
                     /translation="LCSAVLDNHLHQGNELNLDPSRILWPRVLDMNDRTLRSAAIGLG
                     GPANGMAREERFDITAASEVMAILALARDYEDLRFRLGEIVIGPSRDGRPIKANDIEA
                     AGAMALLMRTAFLPNLVQTTEGTPAFIHAGPFANIAH"
     assembly_gap    418..718
                     /estimated_length=301
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <719..1501
                     /locus_tag="HA345_06890"
     CDS             <719..1501
                     /locus_tag="HA345_06890"
                     /inference="COORDINATES: protein motif:HMM:NF013436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HIH85121.1"
                     /translation="PFANIAHGNSSIIADRLSLALNDMVVTEAGFGADLGAEKALHIK
                     AQASGISPDCIVVNVTVRSMKMHGYGMSGITMAGDRLKEENLDMLRLGATANLGRHIR
                     NMARFGPDVVVSINRFPTDTDAEIETLMQIATDAGSAETVLYEGHAKGGEGAEPLAHA
                     VNRAVQRHMAAGRPFNPLFDADAPIEEKVQTIAMEIYGASGIEIETRAQKQLKQIIEW
                     GYGELPVCMAKTQYSFSHDPNLHGAPDGFTLPIREFRLNAGA"
     gene            1526..1615
                     /locus_tag="HA345_06895"
     CDS             1526..1615
                     /locus_tag="HA345_06895"
                     /inference="COORDINATES: protein motif:HMM:NF013436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HIH85122.1"
                     /translation="MMTMPGLPRRPAAADMDMDEDGNLTGVFS"
     gene            1626..2687
                     /locus_tag="HA345_06900"
     CDS             1626..2687
                     /locus_tag="HA345_06900"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015428.1,HMM:NF015430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pelota family protein"
                     /protein_id="HIH85123.1"
                     /translation="MKITHRSDQGCKVRVEDEDDLWTLAQVIRPGVIVKMFGHRRDQT
                     TGSRDGGRAKEAERKSMWLTILTESTEYAAFSDALRVTGIIIEADIDKGSHHTHSIEE
                     RSEVELLWEEMMPLEDDELLQRAATDGAKARVLMAVVESDEIMLFEVTANGLRESTTF
                     TMRGGGKRHGDSSKARTAFFEESAKESLLVLRPDMPLLLCGPGSAREAFADAIRKKGH
                     TGHIRSVATSIGGRAAANEILREGLADDILGEHTLTRQTKLIEQAFTQMSTEGLVAYG
                     GLEILEAAEQGAIETLLLVARLLRDPLERCVNRSWPDVAALVLDSGGEIEQTSEDHDA
                     GLQLAGIGGAVALLRWKIE"
     gene            2723..3424
                     /locus_tag="HA345_06905"
     CDS             2723..3424
                     /locus_tag="HA345_06905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85124.1"
                     /translation="MARPMGRILGFASEDSTETGVVHAAVSRLHDLDRDVWWIQRDGT
                     DCPYPPTVELKEIHRAAFDWHDLLNGARWLLTSGRSILGDEEEFASWSAALTFAELEG
                     TLNAFILDSPSNRFNDVWGVIVSRIRQLHILLLDGEEIDGIARLENWPIDSSKEGRIA
                     TLERIHRQTLVPHVIGRDIKQGWAADAHTYGVAEASSGESDTGAWLGLVMDGLIQSGH
                     VKGAAQEALGSASIS"
     gene            complement(3431..4339)
                     /locus_tag="HA345_06910"
     CDS             complement(3431..4339)
                     /locus_tag="HA345_06910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85125.1"
                     /translation="MAEETVEAELVDIASKEAPRSLAIRIASFYPLGKSPDQDPSKMI
                     RAVWLSTIVFTIPFLAALPLLNPEPEQEVENWYADWVTQSWSQEVGQTISSGSRVEAM
                     VTVDQGGLIGANYTVEMQGGSTIGLDCDPQWLVEMRAPDPVNYSDGTNNTAWSAENWE
                     GSDSVSIDTPVPEIEASTSDELQETIFNLRSDTQVWMYGKGEWLLSVTNQGSEGTFGN
                     CGGQQVTFFINLTVTNWREPRFADGDFNFTTSTVGGGTPVGTFVALGGSVPLLLIAAA
                     VTIGLRKSDTVSPKERADGDENVVED"
     gene            4436..>4902
                     /locus_tag="HA345_06915"
     CDS             4436..>4902
                     /locus_tag="HA345_06915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85126.1"
                     /translation="MDTMWKRRGTAVTWFILGVILASNRIFRELAGGEDIVDAVYWFA
                     YSSVSMMISIRIFEGWIVAGIVATVAIVVREIRSKGQMDIFAGFGQWIRPICLFFLGW
                     FSALAIIYILIDLFFAAGQIRATPFLIGAGMGLALMLLVLCDTHVAKTLEGMFR"
BASE COUNT         1201 a         1124 c         1187 g         1089 t
ORIGIN      
        1 ctctgtagtg ctgtgcttga taatcacctt caccaaggta acgaactgaa tctcgaccca
       61 tctcgcattc tctggccccg tgtactcgac atgaatgaca ggactctgag atccgcagca
      121 atcggacttg gaggcccagc taacggaatg gcacgtgaag agcgtttcga catcacggct
      181 gctagtgaag tgatggcgat tcttgctcta gcgcgagatt atgaagatct acgattccgc
      241 ttgggagaaa ttgtcatcgg accgtctcgt gatgggcgcc caataaaggc caacgacatc
      301 gaagcggccg gcgcgatggc actgctgatg cgaaccgctt ttctccccaa ccttgtccaa
      361 actactgaag gtactcctgc attcatccat gcaggacctt ttgcaaatat cgcacatnnn
      421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      481 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      541 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      601 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnncc
      721 ttttgcaaat atcgcacatg gtaattcaag catcatagcc gatcgtctat cccttgcact
      781 caacgatatg gtagtcactg aggctggatt cggcgcagat ctcggtgctg agaaggcttt
      841 gcacatcaag gcacaggcat caggaatttc cccggactgc atcgtagtca acgttactgt
      901 gcgcagcatg aagatgcacg gctatggcat gagtgggatt acaatggctg gtgatcggct
      961 caaggaagag aacctagaca tgttgaggct tggagcaacg gcgaacctcg gccgacacat
     1021 ccggaacatg gcacgttttg gcccggatgt tgtggtctcg attaaccgat tccccacgga
     1081 cacagatgca gaaattgaaa ctctgatgca aatcgctacc gatgcaggta gtgctgaaac
     1141 cgtcctctat gaaggacatg ccaaaggagg tgaaggggcc gaacctttgg cacatgcagt
     1201 aaatcgagca gtacaacgtc acatggcagc aggtcgccca ttcaacccgt tgttcgatgc
     1261 agatgctccg attgaagaga aggtgcaaac tattgctatg gaaatctatg gggcaagtgg
     1321 aatcgaaatt gaaacgcgtg cacaaaaaca actcaaacag attattgaat ggggctacgg
     1381 tgaacttcca gtttgtatgg cgaagacaca atactcgttc agccacgatc ctaatctcca
     1441 cggtgcaccg gatggattca cccttcctat tcgagaattc agactcaatg caggtgcttg
     1501 atttattgtc gccgcctgtg gctccatgat gaccatgcca ggattgcccc gtaggcctgc
     1561 cgctgcagac atggacatgg atgaagacgg gaacctaact ggcgtgttta gttgaggggt
     1621 gtaggatgaa gattacccat cgctccgacc aaggctgtaa ggttcgtgtc gaggacgagg
     1681 atgacctctg gacgctggcg caagtcatcc gcccaggagt gattgtcaaa atgttcggcc
     1741 acaggagaga ccaaacaact ggcagccgag atggtggtcg agcgaaggaa gccgaaagga
     1801 aatctatgtg gcttacgatt ctcacggaat cgactgaata tgcagctttt tccgatgccc
     1861 tcagagtcac gggaatcatc atcgaagcag acatcgacaa aggtagccat catacccatt
     1921 cgatagagga acgctccgag gttgagttac tatgggagga gatgatgcca ttggaggacg
     1981 atgaactact gcaacgtgcg gcaacagacg gcgcgaaggc tcgagtactg atggctgtag
     2041 tcgaatctga cgagattatg ctcttcgaag tgactgctaa tggcctacga gaaagcacga
     2101 cattcacgat gagaggagga ggtaaacgac atggtgattc gagtaaggca cggactgcct
     2161 tcttcgagga atccgctaaa gaaagcctcc ttgttctccg ccctgacatg cctctgctgc
     2221 tctgtggacc cgggagtgca agggaggctt tcgctgatgc aatccggaaa aagggacaca
     2281 caggacacat ccgatcagtg gccaccagca tcggaggcag ggcggctgca aacgaaatac
     2341 tccgagaagg gttggctgac gatatcttag gcgaacatac actgactcgt cagaccaaac
     2401 tcatcgaaca ggcatttacc cagatgtcaa ctgaaggact tgttgcgtat ggagggttag
     2461 aaatcctcga agccgctgaa cagggagcca tcgaaacact gctattagtt gcacgacttc
     2521 tccgcgaccc attggaacga tgtgtcaatc gctcatggcc ggatgtagcc gccttggttc
     2581 ttgacagtgg aggagagata gaacagactt ctgaagacca tgatgctgga ctccaactcg
     2641 caggcatagg aggcgctgtt gccctccttc gttggaaaat cgaatgaaca aactcattga
     2701 tgtgggttga ttggaacgcc ccatggcacg gccgatgggg agaatcctcg gattcgcttc
     2761 agaggactca acggaaactg gtgtagtcca tgccgccgtt tctcgactcc atgatttaga
     2821 tcgagacgtg tggtggattc aacgtgacgg gacagactgc ccatatccac ctacagttga
     2881 attgaaagaa atacatcgtg cagcctttga ctggcatgat ttactcaatg gcgccagatg
     2941 gctacttact agtggcagaa gtattctcgg cgatgaagaa gagtttgcat cttggtcggc
     3001 tgcgcttacc tttgccgaac ttgaaggtac actcaatgcg ttcatcctcg acagcccttc
     3061 caatcgtttc aatgacgtat ggggcgtcat tgtatctcgt atccgacaat tgcatatcct
     3121 cttgctcgat ggtgaagaaa tcgatggaat tgcccgactt gagaactggc caatcgattc
     3181 cagtaaggag gggaggattg cgacgcttga acgcatccat cgccagacac ttgtacctca
     3241 cgttatcggc agggacatca agcaaggatg ggcagcagat gcccatactt acggagtagc
     3301 tgaagcgtca tctggagaat cggataccgg cgcatggcta ggattagtga tggacggatt
     3361 aattcaatca ggtcatgtca aaggtgcagc ccaagaagca ttgggttctg caagtatatc
     3421 ctgagtcaga tcaatcttca acgacgtttt cgtctccatc cgcccgttcc ttaggagaca
     3481 cagtatctga ttttctcaga ccaattgtaa ctgctgctgc aatcaataat aggggcactg
     3541 aaccgccaag tgcaacgaaa gtaccaactg gagtaccgcc tcctacagtc gacgttgtga
     3601 aattgaagtc accatcagcg aaacgtggtt ctctccaatt agttactgtc agattgatga
     3661 agaaggtcac ctgttggccg ccacagtttc caaaggtccc ctcactcccc tgatttgtca
     3721 cagagagaag ccattcaccc ttaccataca tccacacttg tgtatcactt cgtagattga
     3781 agatcgtctc ctgaagttca tcactcgttg aggcttcaat ctccgggact ggtgtatcga
     3841 tactgactga atcggagcct tcccaatttt ctgccgacca agcggtgtta ttggttccgt
     3901 cggagtaatt gactggatca ggagcgcgca tctcaacaag ccattgaggg tcacaatcga
     3961 gacctatggt actcccgccc tgcatctcaa cggtataatt cgcaccgatt aagccgcctt
     4021 gatcaacagt gaccattgct tcgacacgag aaccactaga gatggtctgc ccgacctctt
     4081 gagaccaaga ctgtgtgacc caatctgcat accagttctc aacctcttgt tccggttcag
     4141 gattgagcag cggtagggca gcgagaaatg ggattgtgaa gacgatagtt gagagccaga
     4201 cagcacgaat catctttgag ggatcctgat caggagattt tccaagtgga tagaacgacg
     4261 ctatgcgaat tgcaagagaa cggggcgctt cctttgaggc aatatcaaca agttcagcct
     4321 caaccgtttc ctccgccata cctcaaccaa gagggacctc gacttgagat tgccgcgagt
     4381 acgagtagac aaacggtgaa aacctcaacc atacaaacac taaccgggca acagtatgga
     4441 tactatgtgg aaacgtcgtg gaactgctgt tacgtggttc attctcggcg tcatcctagc
     4501 atctaatcgg atatttcgag aacttgctgg tggcgaagat attgttgatg cagtctattg
     4561 gtttgcctac tcttcagttt caatgatgat ttcaattcgt atcttcgaag gctggatagt
     4621 tgcaggaatt gtggccactg tcgccattgt tgtaagagag ataagaagta aaggacaaat
     4681 ggacatattc gctggttttg gccaatggat tcgtccaata tgcttgttct ttcttggttg
     4741 gttttccgcc ctcgcgatta tctacatact catcgaccta ttctttgcag caggacaaat
     4801 tcgtgcaact cctttcctaa tcggagcagg gatgggactg gcactaatgc tactcgtact
     4861 ctgtgacaca catgttgcaa aaacactcga aggcatgttt cg
//
LOCUS       DUKB01000208            3719 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_308255, whole genome shotgun sequence.
ACCESSION   DUKB01000208 DUKB01000000
VERSION     DUKB01000208.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3719)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3719)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3719
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_308255"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..639)
                     /locus_tag="HA345_06920"
     CDS             complement(<1..639)
                     /locus_tag="HA345_06920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85127.1"
                     /translation="MERMGVYSTIHHPSSERLVVVRERIKEIELEEVQSLDDAWSALD
                     AGDLDLVLAPANLVWNERIKLASMQFDVVAALTRNHPHHVLVSEDGLEHFPAGGIILC
                     DEPLIGRQIRRRRKKIDVRKFETMNIEPTTAEGLRTAQNLIQSGEINGFVTHRGAYDV
                     AGLNGRRHALHNDPEARGVPRFVPTPFCDLIVVITRQGYPGHTLSDWTDEHAF"
     gene            712..1692
                     /locus_tag="HA345_06925"
     CDS             712..1692
                     /locus_tag="HA345_06925"
                     /inference="COORDINATES: protein motif:HMM:NF012568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HIH85128.1"
                     /translation="MVELDALQAELSSRRDIVENALEELVQTELGGPSSDAMRIARSI
                     LMAGGKRWRPVLTLLAHEAAGGDSHAPILDLALSFELIHTATLVHDDLNDGARLRRGA
                     PTLHTTYGDAEAIVVGDYLFAIGFGLGAKSEDRIVDAVMRTCSAIAAGELKQMKHIRD
                     LTTRPEDYDEIIRGKTAGPFSIACGSVAVVAGASEEVVAHLEAFGMGIGIAFQMVDDL
                     LDLTGDMQMGKPRGTDVHEGKMTLPLIHALTMLHGESRNRIAEILADFNDSHWDELLI
                     LLEEAGSLEYTMNLIETQLMTALNHLRSLPESPARRLMEGLAEISIGRRV"
     gene            1694..2794
                     /locus_tag="HA345_06930"
     CDS             1694..2794
                     /locus_tag="HA345_06930"
                     /inference="COORDINATES: protein motif:HMM:TIGR02032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HIH85129.1"
                     /translation="MAKIGEHDVVIIGGGPGGSTTARYAAMSGIDVLVIDGRDPIGTP
                     LQCGELVPSNDEMRRLCPDVPDMDDLFLTPDHAISRYSTEMHVVPPSGKPLKYPFEGL
                     VLNRVAHDEALVELAKKAGAKYLVDHYVQSVEGNTVHLRNGDTIVAKIIVGAGGHSDP
                     IRRDYWDEKSLKIPVKFVLMEGNFGDAVELHFGSSAPGGYAWMFPKTGFANIGLGIQR
                     NFAKGKSINAYTNDFISKYQGEITFRGAGALPMSGTIKTFVKGNYMLVGDSAGMVLPS
                     NGAGITIAMVGGRIAGQVISEHFENGTPLKEYESRWKKQMGKVMRNSKRSFKFGSVLF
                     RLPDWILNLLFNPLTKGIIWRAVTCRRMFGLF"
     gene            complement(2812..3522)
                     /locus_tag="HA345_06935"
     CDS             complement(2812..3522)
                     /locus_tag="HA345_06935"
                     /inference="COORDINATES: protein motif:HMM:NF013382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HIH85130.1"
                     /translation="MDHIRIGEEDWSTLQANLEATIPVYDRINRFATFGQDQRWRRMV
                     QDRLPSEGRVLEVGCGPGTFAENLEGRELTCLDPIPAMLAVAEPRVNEKRTARGYALA
                     TFVEGTAESLPFEDGTFDAVCTLFSFRDWYDKPAGLKEVLRVLKPGGRIVIVDPAKIN
                     RVHGWLGYLYMRMWVGSYARFICRQKDHPWKWLTKTYVHFGTTKDYVQMLKDTGFVEV
                     QSKVIFPGMSTIWQGQKA"
BASE COUNT          914 a          830 c          973 g         1002 t
ORIGIN      
        1 gaatgcatgt tcatctgtcc aatcagagag agtgtggccg gggtaccctt ggcgagttat
       61 gacgacgatt agatcgcaga acggggtggg gacaaatcgg ggcactcctc ttgcttctgg
      121 atcgttgtgc aatgcatgtc tccgtccatt taggccggcg acatcgtatg cccccctgtg
      181 ggttacaaat ccgttgattt ctcctgattg aattagattc tgagcagtac gcagaccttc
      241 agccgtggtg ggttcaatat tcatggtctc aaatttacga acatcgattt tttttcgccg
      301 ccgcctaatc tgtctaccga ttagaggttc gtcacagagg atgatccctc ctgcgggaaa
      361 gtgttctagc ccgtcttcac tgacgagcac gtggtgtgga tggttacgtg ttaatgcggc
      421 aacgacatca aattgcattg aagcgagctt tattcgttca ttccaaacga gatttgcggg
      481 tgcgagaacg agatctaggt cacctgcatc tagagctgac catgcatcgt caaggctctg
      541 gacctcttcg agttcaatct ccttaatccg ttcccggact accacaaggc gttcactgga
      601 tggatggtgt atggtagagt atactcccat tcgctccatt cgcctgtccc tcgattgtat
      661 tcgaccggac acccgttgat atagcacacc ccacggtatc catccatacc catggttgaa
      721 ctcgatgcgc ttcaggccga actgtcatct cgacgggaca tcgtagagaa cgctttggag
      781 gaacttgttc agacagaact tggaggtccg tctagtgatg cgatgagaat agctcgttcc
      841 atattgatgg cgggagggaa gcgttggcgc ccggtgttga cgcttctcgc gcatgaggcg
      901 gccggtggtg acagtcatgc accgattcta gatttggctc tctcgttcga actcattcac
      961 accgccacac tcgtccatga tgatctgaac gatggagcac gccttcgtcg tggagccccc
     1021 acacttcaca ctacttatgg agacgctgaa gctatcgttg tgggcgatta tttgtttgca
     1081 ataggtttcg gcttaggtgc taaatcagaa gaccggattg tggatgcagt gatgcgcacc
     1141 tgttctgcca tcgcagcggg ggaactcaag cagatgaaac atatccgtga tttgacgaca
     1201 cgtcctgagg attatgatga gattatccgg ggaaagaccg ctggcccatt ctccattgca
     1261 tgtggctcag ttgctgtagt ggcaggtgcc tcagaagagg tggtggcgca cctcgaggcc
     1321 tttgggatgg ggattggtat agccttccag atggtggacg accttcttga tttgaccgga
     1381 gacatgcaga tgggcaagcc cagaggaacc gatgtccatg agggtaagat gactctgcca
     1441 cttatccatg cgttgacgat gctacatggt gagtcgcgaa atagaattgc agagattctg
     1501 gctgatttca atgactccca ttgggatgaa cttctcattc ttcttgaaga ggcaggatct
     1561 ctagaatata caatgaatct aatcgagacc caacttatga ctgcactcaa tcatctccgt
     1621 tctctcccgg aatcaccggc tagacgtcta atggagggtc ttgcagagat ttcgattggt
     1681 cggagggtgt gaaatggcca aaatcggtga acatgatgtt gtaatcattg ggggcggtcc
     1741 aggaggtagt acaactgcca gatatgctgc aatgagcggt atcgatgttc ttgtgattga
     1801 tggtagagac ccgattggaa ctccgttgca gtgtggggaa ttggttccta gcaatgatga
     1861 gatgcgtcgt ctttgccccg atgttccaga tatggacgat ttgttcctaa cacctgatca
     1921 tgcaatatct cgatattcaa ctgagatgca tgtagttccg ccctctggaa aaccactgaa
     1981 atatcccttc gagggtttag tattgaatcg tgttgcacat gatgaagccc tagtagaatt
     2041 agccaaaaaa gcaggagcga aatacctagt tgaccattat gttcaatcag tcgaaggaaa
     2101 cacagtccat cttcggaatg gggacacaat agttgccaag attattgttg gagccggtgg
     2161 ccatagtgac cctataaggc gagattactg ggatgagaaa tcattgaaaa ttccagttaa
     2221 gtttgttttg atggaaggaa attttggcga tgctgtggag ttgcatttcg gctcatctgc
     2281 tcctggcggc tacgcttgga tgttcccaaa gaccggtttt gcaaatatag ggcttggaat
     2341 ccaacgtaat tttgctaagg gtaagtcaat taatgcatac acgaatgatt tcatctcaaa
     2401 ataccagggt gaaataacct tcagaggtgc aggggcgctg cccatgtctg ggacaatcaa
     2461 aacattcgtt aaagggaatt acatgcttgt tggggactct gcaggaatgg tattgccatc
     2521 aaatggtgca ggcattacaa ttgcaatggt tggggggaga atcgcaggtc aagtaatatc
     2581 agagcatttt gaaaatggca cccctctgaa agaatacgaa tcaagatgga agaaacaaat
     2641 gggcaaagtt atgcgtaatt caaagcgttc attcaaattt ggtagtgtct tattcaggct
     2701 tccagattgg attctgaatt tactgttcaa cccattaaca aaaggaatca tctggcgagc
     2761 tgtaacttgt cggcggatgt ttggattgtt ctagttcact atggcctgaa gtcaagcttt
     2821 ctgcccttgc catattgttg acattccagg gaatattacc tttgattgaa cttcaacaaa
     2881 tccggtgtcc ttcaacatct ggacgtaatc tttcgtggtc ccaaagtgga cataggtttt
     2941 ggttaaccac ttccaaggat ggtctttttg tcgacagata aagcgagcat atgatccgac
     3001 ccacatgcgc atgtagaggt aaccgagcca tccgtggact cggtttattt ttgcggggtc
     3061 cacgattacg attcgaccac ctggctttag cacccgaagc acttccttca gcccagcagg
     3121 cttgtcatac caatctctga atgagaataa tgtgcaaact gcatcgaagg ttccatcttc
     3181 gaaaggcaaa ctctccgcgg ttccttcaac gaaagtagcg agggcataac cacgtgcagt
     3241 tcgcttttca ttgactcgtg gttcagcgac agctaacatt gctggaattg gatcgaggca
     3301 ggtgagttca cgaccttcga ggttctccgc gaaggttccg gggccacatc ctacttcaag
     3361 gactcgtcct tctgaaggga gccgatcctg gaccatccgg cgccagcgtt ggtcttggcc
     3421 gaaggttgcg aagcgattga ttcggtcata gaccgggatt gtggcttcga ggtttgcttg
     3481 aagggtggac cagtcctcct caccgattcg gatgtggtcc acatttctcc gaaatcggtg
     3541 attgatttga gtttatgctg tctttttgcg tcagaaaaga gtatgagttt caatggagaa
     3601 tatgataagc ccatctttag tcccgcgtca tagggtaggt tgcaatgggt cgaaatgaca
     3661 tcttgcgaac aatcaaagat gctgaagcta cggctgagga aacggttcgt tctgctaag
//
LOCUS       DUKB01000209           14571 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_135135, whole genome shotgun sequence.
ACCESSION   DUKB01000209 DUKB01000000
VERSION     DUKB01000209.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 14571)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 14571)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14571
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_135135"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..968)
                     /locus_tag="HA345_06940"
     CDS             complement(<1..968)
                     /locus_tag="HA345_06940"
                     /inference="COORDINATES: protein motif:HMM:NF013964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HIH85131.1"
                     /translation="MDEKLRKNYSDSFRIVDDFLSSNDNSVKSPGFSKLEKERVLSQG
                     RRCPTCAEKLTSSSITLEHIHPRCLGGKNNKENKVAMCKECNFSRNEVMHHCLGGSNT
                     KFFKIRWPTNRTSVEEFLIWSHITVNPEFEHFGIFMHLDQRFTDARGIDYANSLKKPD
                     SIQKSWKNKFISKAVEMQQRWLAPKHNREEGTIVLCPRCPQKLRLNLENSKFKCPACE
                     CLLDGNGEEISQKIGSTIEHQKIMDIVANAIKPGSRLAAIPELILNTANNNSENVYEN
                     WIEIKTEMGFGKSTKISKIFREFGYTLRGSGSTVQYICRSEELVSE"
     gene            complement(968..1852)
                     /locus_tag="HA345_06945"
     CDS             complement(968..1852)
                     /locus_tag="HA345_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85132.1"
                     /translation="MSPSKQNKQTDYPTNENQDPITRYTELHGEPTWEDVEQECESWQ
                     LAADIARENRNEGNAIVKKYIDKRKEIQVQLRSFLDKVDQFQNKRNEANEKVKRIKEE
                     RAEAVENMKKLRGKEEETELNEAEKKRLEGYIASQDEYHVMVQKMSAEAQKYHNDMQE
                     TRSEVYLLRQTHNNTHKKVVRQREIADQHHHDFILFVSEYQRIIDSNSKVEADDEKDT
                     SWIVSEDEADSVIAIVKEYYTDIGEEDHLVEIYLDEGRIVIETYHPGKLIGKKGVKIK
                     SLVEMFDLPPKIEITKVA"
     gene            complement(1821..2105)
                     /locus_tag="HA345_06950"
     CDS             complement(1821..2105)
                     /locus_tag="HA345_06950"
                     /inference="COORDINATES: protein motif:HMM:NF024804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HIH85133.1"
                     /translation="MATAEQVMMIFKLRGLGWSQQEIADEIGLSRQAVAYQLNRLKRM
                     SLKEGAEAALKAALLGGVAIAGSVALALLIDELGKNRTDTNEPFETKQTN"
     gene            complement(2153..4045)
                     /locus_tag="HA345_06955"
     CDS             complement(2153..4045)
                     /locus_tag="HA345_06955"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HIH85134.1"
                     /translation="MAGQPKSPEAVLLTDFENDFESDTDTRREVRQLNIAAVSTAGFT
                     VIILLLSMVWNGDHSIAEDDPLDGDWWAVPLDDRWLMDLNMTGERSQLPEKGPYNWTG
                     PSEYFVEVDLPASEQDAGFPGPALMHIALWMPNVPPGTTVPVIATVHPYYDFGGEGIV
                     GDDSNPNTVPDRGVGEWVLEQFVPHGYALAQVSTFGTGQSTHCQDVKGLGEQTGIQAA
                     VEWLGTQEWSNGNVGLMGKSYAGTTNWEAAQNPSEHLKTIVPISGSIGVQQMFYRNGS
                     SESRAMLYDALYEGATTDATEDDMRMCSDDVIGPVSPFTTWAGAGLGGDEWNDYWDER
                     YHLQDVIDNYEGSVYIVWGLQDWNVDPYHAFPTYQMLNDAGVHTRVISGQWAHNYPDQ
                     PEIHGGLTSGYGEEAYPNMSRMDWAIEMWNWFEYYLKGNGEEPAAHAQMQTHDGRWHV
                     EETWPPEDMEWTTMDVSTWDSNGGMSVSATSSLTLTSPPMEEDLHIQGMPTFHVRAST
                     GLCNGGQLFVTMRDATDDLRLGHATMDVRYRDGGYESQAATPLSEYTMMMEFNPMDVR
                     VPAGHSIELVITEAGEDYLPSPCAAFGMTISGGEQPLGLPLTDRSDDAEEWFNVPPWW
                     DVEVSE"
     gene            complement(4085..4969)
                     /locus_tag="HA345_06960"
     CDS             complement(4085..4969)
                     /locus_tag="HA345_06960"
                     /inference="COORDINATES: protein motif:HMM:NF014527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85135.1"
                     /translation="MSTLSHADRLHETLEQWLENTKVGDPEKLHSDLPRRWERFDNVA
                     LLPLHSFTSDLWTEIISETWWAEVAEALKVERLFRKGEIKGERRESTAELLYGEGVDV
                     ERIEHGVRFVYRITECMFSQGNLNERARMGSINVEGEQILDLYAGIGYYTLPLLVGSK
                     TTEVIATEWNPNAIRDLHKGLLRNGVENRCTVIEGDNRTHGKRLQGCFDRVILGLLPQ
                     PWEGLQTAVEALRPEGGILHVHGIAPVENPEYWESEVIDRLKAIVPDAKIRGVEGIRV
                     KSYAPHWDHRVLDVQIES"
     gene            5037..8150
                     /locus_tag="HA345_06965"
     CDS             5037..8150
                     /locus_tag="HA345_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85136.1"
                     /translation="MRETRKQKALCTLVILLLVSVALPVISADPPPGSPEVTNTICDD
                     IPGTGFPYPDATICDDWDWTDDDTPGSTWVESEYAIEMNSLTEFTLDMEFAIHEFNRT
                     AIGLDSVNLGGNSTTSDGMPADYIRNYFPLPANPANPSGPTVKDTLLTEFGNVVETAL
                     TAAFGTSTGISVEYRQSIDVAGAPITCTDDPEQDSADEDASLPEDAYNPPICMRVVLT
                     VQSDSSNYGLGQGQEDNERLARGLLTMGTRIDTNFTLVAEQGHLVSYDLTPPSYANFE
                     VLDGTGVEVQRFENLFEYNAGLWVIDNRDATDGDGSAETEADIRVSRRETTTKTVQLG
                     SNDEAMSIEIEIDASDDTAAVATLSLSVNHLDASMLSTWGIQPFDSGVDMPWITSDGI
                     RMLQENGYVDMNDLVDIVPIDDFANSFTSMMDTSVSFSEVSFSPPDATGGLDFTHIPQ
                     VTCAELSPSGFCVEGQHAMNGTYPIRLETTSSEMNLGIIDLAARLLNVSDSNGDPLDV
                     SFIGNEDLALLMNVLSIEKEIDPDMIGDFIPETIPPADITIRLLLPDWLRSTSDSPEM
                     IELVYVHEGSEATDVGITGPNPWPWEHALCYETTDCTDESEDVFCLSTWRTCIRSEVE
                     LDLSSFSIKEFSGEVEMDLEASVQVHVHRIGLPESLDDDVPYISVESIPSDLIRHVIA
                     LGDDRDGGLLAGLVDAPILPFGDVNHTLEVSDQGFQNLSFALTQLISDSIQQLNQDID
                     DEMGGLNDQLKADLEAQGIPVEFNGLVIDLSGISLITEISPFTEIQGTELSDEIPITI
                     GARLEKTTIRIGMMEGKMFGIETISNPAQISASIMESLAGSFVGGLAVNSGMRGFAAP
                     VYTTEIPSVGSTAEGIELKPGVEVNLGFPRGLGVAEIHSEQGNAVVETIDGRQHVTYR
                     VPLCETEDCADSTDTLTFTLMLGYEFILIEITPYLTALAMLIIFLMYRRHAKRAKKRA
                     ILEEEKKRARRAVIQNTQAVLLEDGLPPVPMDGDWSESGGWGEDPWADNDPAEIYMQG
                     RIKQKIR"
     gene            complement(8154..9878)
                     /gene="uvrC"
                     /locus_tag="HA345_06970"
     CDS             complement(8154..9878)
                     /gene="uvrC"
                     /locus_tag="HA345_06970"
                     /inference="COORDINATES: protein motif:HMM:NF001832.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HIH85137.1"
                     /translation="MPVDGQSLDLPAKPGVYLFKRNDERVMYVGKATVLRDRVRSYFS
                     KNPDRAMIPSLVEAADHVDCIVTQNPSEALMLERQLIRKHKPRYNSLLKDDKSYPFIA
                     ITNEEFPRILYTRHPPEDAKIWGPFPDVGAAKRVIQVLRYEFGIRDKDCKGEDGCMSR
                     HIGLCKGPCHDPDGYPNIVKAVIGVLDGDARVLIESLQREMDEASQRMAFENAAKIRD
                     MIAAIHKTLSQQIIHSRFYQDCDAIGFSSHGDIGTVVILHTREGTIQGQVQYPLIHRG
                     DIMESIALILSEHYASRRPPRTLLLPTPVSEWMEHWLTERRNGAIEIRVPQRGELAKL
                     QAMADSNARIQAERNAKRKSGSIEQVAADDAANLLGMDSLNYIVCFDMAQLQGEERVG
                     ASVAMRYGRPLKEEYRTYKVKTDAPDDLRMMREVIERWIRKQEDWPDLVLLDGGETHL
                     NMMRDLLNDLELSDSITYAALAKKEETLYRPNEAPIILDRRGRLFIHARDEAHRFVNR
                     FHRKRRARSAIADPLETVPGLGAKKLQSLLRHFGGRKGIEHATAKDLASAPGIGPTLA
                     ERIIEHLH"
     gene            9930..12083
                     /locus_tag="HA345_06975"
     CDS             9930..12083
                     /locus_tag="HA345_06975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85138.1"
                     /translation="MPLTLADRLLCLLSEQSESLVSAWDVPRTASLPGLSERLGVVRS
                     ALHPHLKSLQEAGLILTRQAHVIDGGSRKRTVVHPTLEGRRRSMDFIEPTIECHGEIV
                     GFAPEKIDLIGRELMVTDLFERLVSGDTHVLTGLAGIGKTALLREIAHHAVLEGHKVR
                     WAQLDIDSDVRSIAHDLLGLTGPESQEAIVGMLDVEDLVIIDGIHEVHPRHEDAIIEL
                     ILRITGRGRTSIACRAPVPDALRDLPVIKIEGLTPENAAKMLPDDMDPEEALYLGEAL
                     GGHPLALALLDSNSALPIATTAVHDFVQQNVLVSLDERCHNVLDRVVLEPVLLRGNEV
                     EDEDGFVDLDERALLRWRSNLFGIETLIATVRMTDWPTSERVKIHSDLAGQWAERSGG
                     RARRIEMHHRIRSGEDNIADLLLPVIDEISAEIPSASITLVEDALEASDGDVRLRFEA
                     ARLSLERAEYNEAEAHLEKLSKSPMSDILRSRLLRVQGDSSAADNLELSAIERMDEES
                     RIRYTLSSIVRRIDDWIPTPKCREDANIILEVVDAFDSTLKPEHPLTAGARIANEFSR
                     FRLHLDLDDADAAQRVLDRLIAASGTRDPIIRRMRLRIEAHRAQPDDVPMIVARIEAE
                     PDNIERCRLMHSMLDRMLDPPPGLIAGFERSSHLQIPDISPLGRRLLASRWRLIARTD
                     PSRRIPALREAVHHLQRSECPHAASELIERVHRLI"
     gene            complement(12084..12320)
                     /locus_tag="HA345_06980"
     CDS             complement(12084..12320)
                     /locus_tag="HA345_06980"
                     /inference="COORDINATES: protein motif:HMM:NF013224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HIH85139.1"
                     /translation="MAAIGFVLIKTETGSEATVREELEAIDLVEGRWGIFGSFDVLVK
                     VVADDEVELTRCIMEQIRTIKGVMDTRTLIGSRI"
     gene            complement(12331..12564)
                     /locus_tag="HA345_06985"
     CDS             complement(12331..12564)
                     /locus_tag="HA345_06985"
                     /inference="COORDINATES: protein motif:HMM:NF013224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HIH85140.1"
                     /translation="MGAAFVLIKTHPGRERDVYVALDNLDAVLEVHVLYGEHDLIVRV
                     GSDNPKELAQILMNTFRTIDGIRDTETLITVDY"
     gene            12681..>14571
                     /locus_tag="HA345_06990"
     CDS             12681..>14571
                     /locus_tag="HA345_06990"
                     /inference="COORDINATES: protein motif:HMM:NF024627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HIH85141.1"
                     /translation="MSGKVCLLIALFLTASWIGVLQPSELDSEEAESIFVHSRAVTTW
                     SGTVQLSSSYTVASGDELRILSGTTIEMSQGARLNVDGRLSVLGTDVAPVLLTSGIST
                     QSHEGLQFNTSSNGFGSVIRNLTIQNADYGATIYGSNPLLDNLTILDPDYVGVDLFNS
                     ATPTIVNLHIDEAGQDLHGFANTWRYGLGLSIGAGSAPVVTGLRVNDAITRGINVWGG
                     SGGLIRDTHIHNVTLATQAISAGVWVEDSILLFQNLTVNRSDHGLYVRHITETGVTRP
                     TFRDTTIENSMYVGVFIERYNHSLYANIPMNAQFEDLTIRGTGGPNAKAPGLCTAALN
                     INTSGVYIENALIEDNDCIGFRGYMMGPSTTVRGLTVNGSGEVGAADPNLGSGIYLRS
                     VNWAPTFDDISVSGAAANGIHLRKASLRGTNWSVDNSSSIGLYIRESHPEVDGIIVED
                     NGLNGVHIFDANNVLLENVVSARNGASATGVADGVGYLYEESNTLTAETKDVTCRTCT
                     SIDDAQGGVMLSSSIDVVLENHTIVTPTGIGPALRVDNSAITRTGVVTIRSMAIHQEE
                     ASTHAVSIGSSDARINGLNLQGNHSGMFWTGSGASGLPSSLASSTLTGPNCLSLTAHS
                     ELSDDS"
BASE COUNT         3418 a         3575 c         3452 g         4126 t
ORIGIN      
        1 tcctcagata caagttcctc agatcgacaa atgtactgga cagtggaacc agatcctctg
       61 agtgtgtatc cgaattctct gaagatttta ctaatctttg ttgacttgcc aaaccccatt
      121 tctgttttga tttctatcca gttttcatac acattttcag aattattgtt tgcagtattg
      181 agaattaatt caggtatagc cgctaatcgg ctgcctggtt tgattgcatt ggctacgata
      241 tccataattt tctgatgttc aattgtgctt cctatttttt gactgatttc ttccccattt
      301 ccatccaaaa gacactcgca ggcaggacat ttgaacttac tattttctaa attcagtctc
      361 aatttttggg ggcatcgtgg acatagaaca atagtcccct cctctctgtt gtgtttgggt
      421 gccagccatc gctgctgcat ctctactgct ttggaaatga atttgttctt ccaagatttt
      481 tgtattgaat ccggtttttt taaggaattg gcataatcaa ttccacgcgc atcggtaaat
      541 cgttgatcta ggtgcatgaa gatgccaaaa tgttcgaatt caggattgac tgtaatatga
      601 gaccaaatca gaaattcttc tacagaggtt ctattggtag gccaacgtat tttgaagaat
      661 ttcgtattac tacccccaag gcaatggtgc attacttcat tccgagagaa attacactct
      721 ttacacattg caaccttgtt ttctttgttg tttttacccc ctaggcatct tggatggata
      781 tgttcgagag taatggatga agaagtcaat ttttccgcac acgtcggaca tcttctacct
      841 tgagaaagaa cccgttcttt ctctagtttc gagaatccag gactctttac agagttatca
      901 tttgaactaa ggaaatcatc aactattcga aatgaatctg aatagttctt tctcaatttt
      961 tcatccatta cgccaccttc gtaatctcaa tcttaggtgg caggtcaaac atctcaacca
     1021 atgatttgat tttcacccct ttctttccaa tgagtttccc tggatgatac gtctcgatta
     1081 cgatccgtcc ttcatccaga taaatctcta ccagatggtc ctcttcacca atatctgtgt
     1141 agtattcttt cacaatagcg atgactgaat ccgcctcatc ttcgctgact atccaagaag
     1201 tatctttttc atcatctgct tcaactttag aatttgaatc aattattctc tgatattcag
     1261 acacaaagag gatgaaatca tgatgatgtt gatctgcgat ttctctctgc cttacgactt
     1321 ttttatgtgt attattatgc gtctgtctca acaggtaaac ttcggatcga gtttcttgca
     1381 tgtcattatg atatttctgt gcttcagccg acatcttctg aaccattaca tggtattcat
     1441 cctgtgaagc tatgtatcct tcgagacgtt tcttttctgc ttcattcaat tccgtttctt
     1501 cctctttccc cctcaatttt ttcatatttt cgacggcttc agcacgttct tccttgattc
     1561 gctttacctt ttcatttgcc tcgtttcttt tattctgaaa ttggtcaact ttatccagaa
     1621 aggatcttaa ttggacctgg atttctttcc tcttgtcaat gtatttcttt acgattgcat
     1681 ttccctcatt cctattctct cgagctatat ctgcagccaa ctgccaagat tcacactctt
     1741 gctctacgtc ttcccaagtg ggttcaccat gaagttcagt atatctggta attgggtcct
     1801 ggttttcgtt cgtggggtaa tcagtttgtt tgttttgttt cgaagggctc atttgtatca
     1861 gtcctgtttt tgcccaattc gtcgatgagt aatgcgagag ccacacttcc cgcaattgcg
     1921 acaccgccga gcaaggcggc cttcagtgcg gcttctgctc cctctttgag ggacattctc
     1981 ttcaaccgat tcaattggta ggcgacagcc tgtcgtgaca gtccgatttc atcggcgatc
     2041 tcttgttgag accatccgag acctcggagc ttgaagatca tcatgacctg ctccgctgtc
     2101 gccatatgcc atattagtgg gcacattgct ataattgttg gcattatgcc aactattctg
     2161 aaacctcaac atcccaccaa ggtgggacat tgaaccattc ctccgcatca tcacttcgat
     2221 ctgtgagcgg taggcctagc ggttgttcac cgccagagat tgtcattccg aaggctgcac
     2281 aagggcttgg caagtagtcc tcgcccgctt cggtgattac tagctcaatc gaatgacctg
     2341 caggaacgcg gacgtccatc ggattaaact ccatcatcat cgtgtattca cttagtggcg
     2401 ttgctgcttg agattcgtaa ccgccatctc ggtaccgaac atccatcgtc gcatgaccaa
     2461 ggcgcaggtc atccgttgca tctcgcattg ttacgaagag ttggcccccg ttgcatagtc
     2521 cagtgcttgc acgaacatgg aatgtcggca ttccttggat gtgtagatcc tcttccattg
     2581 gaggcgaggt tagcgtgaga gatgaggtcg cagagaccga catgcctcca tttgaatccc
     2641 atgtggatac atccatcgtt gtccattcca tatcctctgg aggccaagtt tcttcgacgt
     2701 gccagcggcc gtcatgcgtc tgcatttgcg cgtgagctgc aggttcctcg ccgttgccct
     2761 tcaggtagta ctcgaaccag ttccacattt cgatagccca atccattcga ctcatgttgg
     2821 ggtatgcttc ctctccatat ccagaagtga gtcccccgtg gatttcgggt tgatcggggt
     2881 aattgtgagc ccattgaccg gagattactc gcgtatgaac gccagcgtcg ttcaacatct
     2941 ggtaggttgg gaatgcatgg taggggtcaa cgttccagtc ttgtaggccc catacgatgt
     3001 atacgctacc ttcgtaatta tcgattacat cttgcagatg atatcgttca tcccagtagt
     3061 cattccactc atcgccacct aggccagctc ctgcccaagt ggtaaacgga ctgactggac
     3121 caatgacatc gtcgctacac attcgcatgt catcttcggt tgcatctgta gttgcacctt
     3181 cgtagagagc gtcgtaaagc attgctcgcg actcactact accgttgcga tagaacatct
     3241 gttggactcc gatgctgcca gagataggta cgatcgtttt cagatgctcc gaagggttct
     3301 gcgctgcctc ccagttggtg gtgcctgcat acgatttacc catcagccca acattcccat
     3361 tcgaccattc ctgagtccca agccattcaa cagcagcttg gattccagtt tgttcaccta
     3421 gtcctttgac gtcttgacag tgtgttgatt gtccggttcc gaaggtcgat acttgtgcga
     3481 gtgcgtagcc gtgcggaacg aactgctcaa gcacccattc acctactcct ctatcaggga
     3541 cagtgtttgg attagagtca tcaccaacaa ttccctctcc accgaagtcg tagtatggat
     3601 ggactgtggc aatgactgga acagttgtac ctggggggac attcggcatc cacaaggcga
     3661 tgtgcattag agcagggccc gggaagccag catcctgttc tgaggccggt aaatcgactt
     3721 cgacaaagta ctcacttggc ccagtccaat tgtagggtcc tttctcgggt agttggctac
     3781 gttcccctgt catgttcaga tccatcagcc agcgatcatc tagtgggacc gcccaccagt
     3841 ctccatcgag aggatcgtcc tctgcgattg agtggtcacc gttccaaacc atagatagaa
     3901 gtagaattat gacggtgaaa ccggcagttg ataccgctgc aatattcagt tgacggacct
     3961 cgcggcgtgt atcggtgtca ctctcgaaat cattctcaaa atcggtaagc aggacggcct
     4021 caggtgactt tggctgcccg gccatgccat cttcaataac ttcgatttga tgagtctaac
     4081 gatttcatga ctctatttgg acgtcgagga cacgatggtc ccagtgtggg gcataggact
     4141 tgacacgaat tccttctact cctcgtattt tcgcatcggg aacaatggcc ttcaatcggt
     4201 ctattacctc cgattcccaa tactccggat tctccacagg agctatacca tggacatgaa
     4261 gaatgccacc ctctgggcga agagcctcaa ccgctgtttg taacccctcc caaggttgag
     4321 gtaagaggcc gagaataact cgatcgaagc atccttggag ccgtttacca tgtgttctat
     4381 tgtctccttc aatcactgtg caacgattct caacaccgtt tcgaagtagg cccttgtgta
     4441 agtcgcgaat cgcgttagga ttccattcgg tagctatgac ttcagttgtc tttgagccaa
     4501 cgagcaatgg tagcgtgtag taaccaattc ctgcatagag atccagtatt tgttctcctt
     4561 caacgttgat agaacccatc cttgccctct cgtttagatt tccttgtgag aacatacatt
     4621 ctgtaatacg gtagacgaat cgtacaccgt gttcgatacg ttcaacatca actccttctc
     4681 catacaggag ttcagcagta ctctctctcc gttcaccttt gatctctcct ttacggaaga
     4741 gccgttcgac tttgagggct tcagcaacct cggcccacca tgtttctgag ataatctcag
     4801 tccacaagtc agaggtgaag gaatggagtg ggagaagagc cacattatcg aatctctccc
     4861 agcgccgcgg gaggtctgaa tggagtttct cggggtcgcc tactttggtg ttttcaagcc
     4921 actgttctaa tgtttcatgg agtcggtcag catgactaag ggtactcatc tgacctctct
     4981 ccacaccgcg tgttaatggg aactgcatta taggatgcgg acctgagtcc gttgagatgc
     5041 gtgaaacaag gaagcagaag gctctgtgta ctctagtcat cctcctcttg gtctctgtcg
     5101 ctcttccagt gattagcgcc gacccacccc cgggttctcc tgaagtgacg aacaccattt
     5161 gcgacgatat tcctggaaca gggttcccgt atccggacgc caccatatgt gatgattggg
     5221 attggacgga tgacgataca ccaggttcta cgtgggttga atccgagtac gcgattgaga
     5281 tgaattcgct tacggagttc accctcgaca tggagttcgc gattcatgag ttcaatcgta
     5341 ccgctatcgg tctcgattca gtgaacctcg gaggcaacag taccacctcg gatggaatgc
     5401 cagcggatta tattcggaac tatttccctc tccccgccaa tcctgctaac ccgagtggtc
     5461 cgaccgtgaa ggacacgcta ctcacagagt ttggtaatgt ggttgaaact gccctgactg
     5521 cagccttcgg tacctcaact ggcatctcgg tagagtaccg tcagagtatc gatgtagccg
     5581 gcgctccaat cacttgcacc gacgacccag agcaggattc tgcagatgag gatgcatcct
     5641 tgcccgagga tgcctacaat cctccaattt gcatgcgtgt agttctaacc gtacaatctg
     5701 attccagcaa ttacggcctc ggtcaagggc aggaggacaa tgagagattg gctcgtggtc
     5761 ttctgacgat ggggactcga atcgacacga atttcaccct tgtggctgag caaggccatc
     5821 tcgtatccta tgatctcact ccaccttctt atgcgaattt cgaggtcctc gatggcacag
     5881 gagttgaagt gcaacgattc gagaatctat tcgaatataa cgcgggtctc tgggtcatcg
     5941 acaatcgtga tgcgacagac ggtgatgggt cagcggagac tgaggctgat atccgagtgt
     6001 ctcggcgcga gacgacgact aagacggtac agttgggatc gaatgatgaa gcgatgagca
     6061 tcgagattga gattgacgct agcgatgata ccgctgcggt tgcaaccctt tctctttctg
     6121 tgaaccatct tgatgcctcg atgctgtcta catggggaat ccaacccttc gattcaggtg
     6181 tcgatatgcc gtggattacc tccgacggaa ttcgaatgct acaggagaat ggatacgtag
     6241 acatgaatga ccttgtggac atagtgccta tcgatgactt cgccaattca ttcaccagca
     6301 tgatggatac ttcggtgtca tttagcgagg tgtcattctc acctccagat gcaacgggtg
     6361 gacttgactt cactcatatc cctcaggtga cttgtgctga gttgagcccg tcaggcttct
     6421 gtgtggaagg ccagcacgcg atgaatggga cctatccaat ccggcttgag acgacatcga
     6481 gtgagatgaa cctcggaatc attgatcttg cggctcgcct tctcaatgtc tccgactcaa
     6541 acggcgatcc actcgatgtg tcgttcatcg gaaacgagga tcttgctctt ctgatgaatg
     6601 tcctttctat cgagaaggag attgatccag atatgattgg ggacttcata cctgagacaa
     6661 tcccaccagc agatatcacg atccgtctac tattgcctga ctggttgcgg tccacctccg
     6721 attctcctga gatgattgaa ctcgtctatg tgcatgaggg atcggaggca acggacgtcg
     6781 gcatcaccgg gccaaacccg tggccttggg agcatgctct atgctacgag accacggatt
     6841 gtactgatga gagcgaagat gtcttttgcc tctccacttg gcgtacctgc attcgtagtg
     6901 aggttgaatt ggatttatcc agcttcagta tcaaggagtt cagtggagag gttgagatgg
     6961 atcttgaggc ttccgtgcaa gttcatgttc accggattgg tctgcctgaa tcattggatg
     7021 atgatgtgcc ttacatctct gtagaatcga taccatctga tctcatcaga cacgtgattg
     7081 ctctcggaga tgacagagat ggcggcttgc ttgcaggtct tgtggatgcc cctatacttc
     7141 cgtttggtga tgtgaatcat acgcttgagg tttcagatca gggtttccag aatctttcat
     7201 ttgcacttac gcagttgatt tctgattcga ttcaacaatt gaatcaggat atcgatgatg
     7261 agatgggtgg gctgaatgac cagttgaagg cggatcttga agcccaaggc attccagttg
     7321 aattcaacgg acttgtcatc gatctttcag gaatttctct tatcacggag attagcccat
     7381 ttacagagat acaaggcacc gaactctcgg atgagattcc gattactatc ggggcacgtc
     7441 ttgagaagac cactatccgg attgggatga tggaaggcaa aatgttcggt atagagacca
     7501 tatccaatcc tgcacaaatt tcagcaagca tcatggaatc cttagcgggt tctttcgtag
     7561 gtggacttgc agtcaacagt ggtatgcgtg gctttgctgc accggtctat actaccgaaa
     7621 ttccatccgt cggctctacc gccgaaggta ttgaactcaa gccaggcgtt gaggtgaatc
     7681 ttggatttcc tcgcggcctt ggagttgcgg agatacatag cgagcagggt aacgcagtag
     7741 tagagacgat cgatggtcgt caacatgtga catatcgtgt gcctctctgt gaaacagagg
     7801 attgcgcaga ttctacagat acactgactt tcacactgat gcttggttac gaatttattc
     7861 taatcgagat aacgccatat ctaactgcac tcgcgatgct cattattttc ctcatgtatc
     7921 gacgccatgc gaagagggct aagaaacggg caattctcga agaggagaag aagcgcgctc
     7981 gtcgtgcagt catccaaaat actcaggctg tgctgttgga agatggattg ccacctgtac
     8041 cgatggatgg cgactggtct gaatcaggtg gatggggcga agatccgtgg gctgataacg
     8101 accctgctga gatctatatg cagggccgaa ttaaacagaa gatacgctga ttatcagtgt
     8161 agatgttcta tgattcgttc agctaatgta ggtcctatac ctggtgctga ggccaaatcc
     8221 ttggctgttg catgttcgat gccctttctg ccaccgaaat gacggagaag tgattgaagt
     8281 ttctttgcac cgagtcccgg gaccgtttcg agaggatcgg caattgctga gcgtgctcgt
     8341 cgtttgcgat gaaagcgatt gacaaaccgg tgtgcttcgt ctctagcatg gatgaataga
     8401 cgccctctcc gatcgagaat tattggtgct tcattaggac gatagagcgt ttcctctttc
     8461 ttcgcgagag cagcatatgt gatggaatcg cttagctcga gatcattgag aagatctctc
     8521 atcatgttca gatgggtttc accaccatcc agtagaacga gatccggcca atcctcttgc
     8581 ttacgaatcc atcgttcgat aacttcacgc atcatcctta gatcatctgg agcatcagtc
     8641 ttcactttgt aagtccgata ttcctctttc aaaggccgac cataccgcat cgctacagat
     8701 gccccgactc gctcttcacc ttgtaattgc gccatatcga aacagacgat gtaattcagg
     8761 gaatccatgc ccagtaagtt agccgcgtcg tctgccgcaa cctgctcaat acttcccgac
     8821 tttcgcttcg cattacgttc agcttgaata cgtgcattag aatctgccat ggcttggagt
     8881 ttggctaatt cacctcgctg aggaacacga atctctattg cgccattcct acgttccgta
     8941 agccagtgtt ccatccactc tgatactgga gttggaagta gtaacgtcct aggcggtctt
     9001 cgtgaggcat agtgctcact aaggattaga gcaatggatt ccatgatgtc ccctctatgg
     9061 attagaggat actgtacttg tccctggata gtaccttctc tggtgtggag tattacgact
     9121 gttccaatat ctccatgtga agagaatccg attgcatcac agtcttgata gaaacggctg
     9181 tgaataatct gttgagacaa tgttttgtga attgctgcaa tcatatcacg aattttggcc
     9241 gcgttttcaa aggccattcg ttgtgatgct tcatccatct ccctttgcag agattcgatt
     9301 agtactctcg catctccatc tagtactcca attactgcct tcacaatatt cggataccca
     9361 tctggatcat gacagggccc tttgcatagt ccgatatgtc tagacataca cccatcttcc
     9421 cctttgcaat ctttgtctct gattccaaac tcatacctta gcacctgaat gactcgtttg
     9481 gcagcaccta catctggaaa tggaccccat attttcgcat cttcaggggg gtgtcgagtg
     9541 tagagaattc taggaaattc ttcgtttgtt atggcaatga agggatacga cttgtcgtct
     9601 ttcagtaacg agttgtatcg gggtttatgc ttccgaatca gttgacgttc tagcatcagt
     9661 gcttcactag gattctgcgt cacgatacaa tctacatgat ccgctgcctc gactagtgaa
     9721 ggaatcattg ctcggtctgg attcttagag aagtaagagc gaacacggtc gcgtagcact
     9781 gttgccttac ctacatacat cacccgctcg tcgttgcgtt tgaacagata tactccaggt
     9841 tttgccggta ggtcgagact ctgaccatcc actggcatgg gtccaccaac gcgcggacac
     9901 tcaagaactc ccgccttcct cgatggtatg tgccgctcac actcgctgac cgtcttctct
     9961 gtttgctctc ggagcagtca gagtccttgg tgagtgcttg ggatgtgcca cgcaccgcct
    10021 ctcttccggg gctgagtgag cgccttggtg tagttagatc cgccctccat cctcatctaa
    10081 aatctctgca ggaagcaggc ctaattctga ctcggcaggc gcatgtaatc gacggaggat
    10141 cgcgtaagcg gacagttgtt catccgacgc ttgaaggacg ccgtcgttcc atggatttca
    10201 tcgaaccgac gatagagtgt catggtgaaa ttgtcggttt cgctccggag aaaattgatc
    10261 tcattggcag ggagcttatg gttacggatc tctttgagcg cttggtctca ggagatacac
    10321 atgttctaac cgggcttgca ggcattggta agacggcgct tctcagagaa atcgcacatc
    10381 atgccgtttt ggaaggtcac aaggttcgct gggcccaact ggatatcgac agcgacgttc
    10441 gtagtattgc ccatgatctc cttggattga ccggtcctga aagtcaggaa gcgattgtcg
    10501 gaatgcttga tgtcgaggat ttagtaatca tcgatggtat tcacgaggtt cacccaagac
    10561 atgaggacgc cattatcgaa ctcatcctta gaattacagg gagagggcgg acatcgattg
    10621 cgtgtcgagc acctgtacct gatgcacttc gtgatcttcc tgtaatcaag atcgaaggtt
    10681 tgacgccgga gaatgcagcg aaaatgctgc ccgatgatat ggatcccgaa gaggcgctct
    10741 accttggtga agcattagga ggtcatccac ttgcgcttgc tcttttagat tctaattcag
    10801 cgctacctat tgctactact gcggttcatg acttcgtcca acagaatgta ttggtgagtc
    10861 tggatgagcg ctgtcacaat gttctggacc gtgtggttct cgaaccggtc ctcctccgag
    10921 gaaacgaagt tgaggatgag gatggttttg ttgacttgga tgaacgtgcc ctccttcgat
    10981 ggcgttccaa tcttttcggt atcgagaccc tcattgctac ggttcgaatg actgattggc
    11041 caactagtga acgtgtgaag atccatagtg atcttgctgg ccagtgggcc gaacgaagtg
    11101 gcggccgggc acgtcggatt gagatgcatc acagaatcag gtctggtgag gacaatattg
    11161 ccgacttact cttaccagtc atcgatgaaa tcagcgcaga gattccatca gctagtatca
    11221 ctcttgttga ggatgcactt gaggcgtcag atggtgatgt aaggcttcga tttgaggcgg
    11281 ctcgcttgag ccttgaacgt gcagaataca atgaggctga ggcgcatctg gaaaaattat
    11341 ccaagagtcc aatgagtgat attttacgtt caaggctact tcgagttcag ggcgattctt
    11401 cagctgcaga taatttggag ttgtctgcga ttgaacggat ggacgaagag tcgagaattc
    11461 gatatacgct gtctagtatt gtgcggagaa tagacgattg gattccgact ccaaaatgcc
    11521 gagaagatgc gaatattatc ctcgaagtcg tcgatgcttt cgatagtacg ttgaagcctg
    11581 aacatccact cacggcaggc gcgcgcattg caaatgagtt ctctcgcttc cgtctccatc
    11641 ttgatctcga tgatgctgat gctgcacaac gtgtactaga tcgtttgatc gcggcttccg
    11701 ggacaaggga tcctatcatt cgacgtatgc gcctccggat tgaagcacat cgtgctcaac
    11761 cggatgacgt acctatgatc gttgcaagaa ttgaagctga acccgacaat atcgaacgat
    11821 gtcgtctaat gcattcaatg cttgatcgta tgttagatcc accgcctggg ttaattgcgg
    11881 gttttgagcg ctcttctcat cttcagattc cagacatctc accacttggg cgtcgtcttc
    11941 tcgcctcacg atggaggtta atcgctcgta cggatccatc tcgtaggatc cctgcccttc
    12001 gagaagcagt ccatcatcta cagcgatccg aatgcccaca cgcagcatct gaattgattg
    12061 agcgagtcca tcgactaata taatcagatt ctagatccaa tcagggtcct agtatccatg
    12121 actcccttga ttgtacgaat ctgttccatg atgcatcggg taagttcaac ttcatcgtcg
    12181 gcaacgactt ttacgagtac gtcgaaggat ccgaagatgc cccaccgccc ttcaacaaga
    12241 tcgatagctt ccaattcttc tctaacagtc gcctcagaac cggtttcggt cttaatcaga
    12301 acgaatccga tagcagccat atattcaccc tcaatagtcc acagtaatca gtgtctcagt
    12361 atctcgaatt ccatcgattg tacggaaggt attcatcaga atctgagcga gttctttggg
    12421 gttgtcggat cctactcgaa caatgagatc atgttcaccg tataggacgt ggacctctag
    12481 gaccgcatct agattgtcca gggcgacata gacatcacgt tctcgacccg gatgagtctt
    12541 gatgaggacg aaggccgctc ccatacgatt cccatatcaa gccggtattc tcctgtcttt
    12601 gaactatgcg tttcatctca acccctcttt ctatcaggaa accggtgcat tgattcatgt
    12661 tggtatccgg tttcccactc atgtcaggca aggtatgttt actcattgcc ttgttcttga
    12721 ctgcaagttg gattggtgta ttacaaccgt cagaactcga ttctgaggag gcggagtcca
    12781 tctttgttca ctctcgtgca gttacaactt ggtctggcac ggtccaactt tcatcctcct
    12841 acacagtagc ttctggtgat gaactccgta ttctatctgg gacgactatc gagatgtctc
    12901 agggtgcacg cctcaatgtc gatggtcgtc tgagtgttct tggtactgat gtggctccgg
    12961 tgctacttac ctccgggatt tccacacaat ctcacgaagg cttgcaattc aatacttcat
    13021 cgaatggttt tggttcagta attcgtaatc ttacgattca gaatgcggac tatggagcca
    13081 cgatttatgg tagcaacccc ttgcttgaca atttgacaat tcttgatccg gattatgtcg
    13141 gagttgattt gttcaactca gcaactccta cgatcgtcaa tctccacata gatgaggcgg
    13201 gacaagatct ccatggattc gctaacacat ggcgatacgg actcggccta tcgataggtg
    13261 ctggatcagc acctgttgtt acaggattac gtgttaatga tgcgattact cggggaatca
    13321 acgtatgggg aggttctgga ggacttattc gagacactca tattcacaat gtgactttag
    13381 caacacaggc gatttcagcg ggcgtatggg ttgaggactc cattctcctg ttccaaaatc
    13441 taacagtgaa tcgatctgat catggtctat acgtacgtca tatcactgaa acaggagtga
    13501 cgcgccctac tttcagagac actacaattg agaactcgat gtacgttggt gttttcattg
    13561 aacgttacaa tcattctctt tacgcgaata tccctatgaa tgctcagttt gaggatctca
    13621 caatacgtgg cacaggtggc ccgaatgcta aggcgccggg actctgcact gctgcgttaa
    13681 acatcaatac ctccggagta tacattgaga acgcgctcat tgaggacaac gattgtatcg
    13741 gttttagagg ctatatgatg gggccatcta ccacggttcg aggcctaaca gtcaacggtt
    13801 cgggtgaggt aggggccgcg gatccaaacc tcggttcagg catctatttg cgttcggtaa
    13861 attgggcacc aacctttgat gatatatctg tctccggtgc tgctgcaaat gggatacatc
    13921 tgcgtaaggc aagtcttcgt ggtaccaact ggtctgtaga caacagtagc agtatcggcc
    13981 tctacattcg tgaatctcat cctgaggttg acggcataat agtggaggat aatgggctga
    14041 acggtgtcca tattttcgat gcgaacaacg ttctcttgga aaacgtcgtt tccgcgcgga
    14101 atggagcctc tgcaactggt gttgcagatg gtgtgggata tctctacgag gaatcaaaca
    14161 ctttgactgc tgaaaccaaa gatgtcacct gccgtacatg caccagtatt gatgatgctc
    14221 aagggggtgt aatgctcagc tcaagtattg acgtagtcct tgagaatcac acaatcgtaa
    14281 ctccaaccgg tattggtcct gctctccggg tcgataacag tgcaatcact cgaacaggcg
    14341 ttgtgacgat tcgcagcatg gcaatacatc aggaggaagc gtctacacac gctgtttcta
    14401 tcggttctag cgacgcgcgc attaacggct tgaacctcca aggcaaccac agtggtatgt
    14461 tctggaccgg atccggcgct tctggcctac catcgtcact cgcttcctct actcttactg
    14521 gaccgaattg tctcagcctg actgcacaca gcgaattgtc agatgactct a
//
LOCUS       DUKB01000210            4375 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_178650, whole genome shotgun sequence.
ACCESSION   DUKB01000210 DUKB01000000
VERSION     DUKB01000210.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4375)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_178650"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..866)
                     /locus_tag="HA345_06995"
     CDS             complement(<1..866)
                     /locus_tag="HA345_06995"
                     /inference="COORDINATES: protein motif:HMM:NF012789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HIH85142.1"
                     /translation="MSLNHGQRLALNLDAHLVLDAGAGTGKTKTIVERVIEHYLAPVQ
                     RASLLLPRPARPGRLAGGMIIDGEAERVDLNEWSGLLPTEVVVLTFTNAAAEELKHRL
                     RKALSALRAGSTSGDAKDRADSRIPVQGLPDQFRMLLEDAPIGTIDSFFSRLISSYRP
                     LLSERVSMEQISTAEKITLETLAVNTAWRLSSNRSRHGIAIDAGISQDMVEPFFDARS
                     RLSQTLGGTTTCRKVVRGLLTRSVFLEGVVNALGDDSGEIPEAALREAFTAWLDLDRV
                     IEVLERLQEPIQS"
     gene            complement(863..4342)
                     /locus_tag="HA345_07000"
     CDS             complement(863..4342)
                     /locus_tag="HA345_07000"
                     /inference="COORDINATES: protein motif:HMM:NF024117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HIH85143.1"
                     /translation="MTKKLFADLREPRVLPSNPALEQTIHRLMQVEAAKLSFPILHPH
                     PDWEWPITKTRNLLELDSVLRFQNVPLEVLEEHLSGLQTVLDTVEEKLNGTHPNRVLP
                     RLLTALLDEKRPAFTLEHLDGIVLLDQPPTLMPIQAEILQAIASRVPIHQLCYSGSHR
                     LGLHGWLLEDISPVKTSDDLPEWIPDHPIGGSDPDVPLHRIHVRKNDASAAALGRLVS
                     HAINTGIEDILIVHPNGKDLPRSHLDQLKAIGHRTSRGIIPLRSSPFVHWLAAAVGLS
                     HGEDGFSLERILAIAVQRTVRIFDPDSVDSHPLWNDLHPLPDRDSLESLARDRRLIGG
                     VGVLGDWLRALSADTDDDFRGKRLEATQWWFLNLLGAMRPILDEADVQVLMDESNHVG
                     CSSGEALPFEIVETTPDEWLDRVVSMMDHTSLPFRFDGNVEDGVVGLQTLLSAVSSLR
                     ENERALGLNSILEPKAWRDQIISMIDSAELQDTSKSVGRFTLCSPQEALGCHADLVIL
                     LDPLADNWDLRVRLPPLLSEEERQHLGILRPDGPIREARHHLSSLLHSGKEVIVVDST
                     HIDESTPPVAPYAEWCRDGKWKATLPSILPTNVGETDGWAWETIEELHCLIAESTTVF
                     SYPIDDPSMVVESSHGISRREDRANQGSRLLQRKDPDSNAPLSAPAIFARYEHDLMSD
                     RMGRQPLVIDSGSVYHPESVRTRVVSTRHLEIVPTPKHRKVTLPVVNPEWPVLGGSSS
                     TGASSSVSIDPRPISPDLIDVESMDHRMGGTLELEWPTSKIWSPSRLRVWLQCARRGW
                     LSKALDASADDLPDDELDNRVRGILIHEVYEGMIEDSLGMKRSVERTEFSIPSVGASS
                     FSDESLMTSMAQLLDAHAPWLVRSDVVTEERLRDLVGMREQEWRDWLVSGVDMNPAGR
                     FARIIEAERTLRDAIPLVMEHQIGSSIEREGDEQFRSPHIELDQHEDEPAIRINGWID
                     RVDLIPWDSDGTLVNESGSNSVIPLEGDSDWIPRRLVAIRDMKSAEINRKRKKHHELL
                     FEDIQLALYARAWEIEHPGDQVIAAGVTDIGLDTEHFLEIDLDWKEHLEQFSIGTQTE
                     DLTGIFRFPSSDPGTGKESAFRPWISNRVEAVQRVVNAAMSGQAIPNPDRFCNYCDVK
                     SICGLSHLGGDFR"
BASE COUNT         1213 a         1086 c         1024 g         1052 t
ORIGIN      
        1 gattgaatcg gttcctgcag cctttccagt acctcgataa ctcgatctaa atcgagccat
       61 gctgtaaacg cctctcgtaa agcagcctcc ggaatttctc ctgaatcatc tcccaacgca
      121 ttcaccacac cttcaaggaa aaccgaacga gtcagaagtc cacgcacaac cttgcgacaa
      181 gtggtagtgc cacccaatgt ctgagaaagt cgacttctcg catcaaagaa cggttcaacc
      241 atgtcttgtg aaattcctgc atcgattgcg attccatgtc tactgcgatt agatgacaaa
      301 cgccaggctg tgttcactgc taaggtttcc aatgtaatct tctcagctgt cgaaatctgt
      361 tccatcgaga cacgttccga aagcaaagga cgatacgaag atatgaggcg ggaaaagaaa
      421 gagtcaatgg tacctattgg tgcatcctct aagagcatcc tgaactgatc tgggaggcct
      481 tggaccggga tacgtgaatc tgcacggtcc tttgcatcac cactcgtact acccgcccga
      541 agggctgaga gagcttttct tagtcgatgt ttgagttcct cggctgcagc attcgtgaaa
      601 gttagaacta caacttcagt aggaagaagc cccgaccact cattgagatc tacccgttca
      661 gcttcgccat caataatcat ccctccagcc aacctccccg gacgagcggg acgaggaagg
      721 agcaaagacg cccgttgaac aggagcgaga taatgttcga ttacacgttc gacaattgtc
      781 ttggtcttac ccgtacccgc accagcatca agcacaagat gggcatcaag attcaaggcg
      841 agacgttgac catgattgag actcatcgga aatcacctcc aagatgagaa agcccacaaa
      901 tggatttgac atcgcagtaa ttgcaaaaac gatctgggtt gggaatagct tgtccagaca
      961 tcgcggcatt gacaactcgt tgaactgctt caacacgatt tgatatccat ggacggaagg
     1021 ctgattcttt acccgtccca gggtcagatg atgggaatcg gaaaatacct gtgagatcct
     1081 ctgtctgtgt gccaatggaa aactgttcaa gatgctcctt ccagtctaaa tcaatctcaa
     1141 gaaaatgctc agtatctagg ccaatgtccg tgaccccggc agcaatgacc tgatctcctg
     1201 gatgctcaat ctcccaagca cgagcataca gggcgagttg aatatcctca aagagaagtt
     1261 cgtggtgttt cttacgcttc cgatttatct cggcggactt catgtcacga atggctacca
     1321 atcgccttgg aatccaatca gaatcaccct caagaggaat gacactattg gatccagatt
     1381 cgttaacaag agttccatca ctatcccagg ggataaggtc tactcggtca atccaaccat
     1441 taattcgaat cgcaggttca tcctcgtgct gatctaattc gatatgaggg gaacgaaact
     1501 gttcatcacc ttcacgttca atactcgaac caatctgatg ttccatcacc aatgggattg
     1561 catccctcaa tgtgcgttct gcttcgataa tacgggcgaa tcttcccgcc ggattcatgt
     1621 cgactccaga tacaagccaa tctctccact cttgttctct catcccaaca aggtcacgaa
     1681 gacgttcctc tgtaaccaca tccgatcgca cgagccaggg cgcatgggcg tctagaagtt
     1741 gggccatcga agtcatcaaa ctctcatcag agaaggagga ggctccgact gaaggaatag
     1801 agaattctgt tctctcaaca gaacgtttca ttccaagaga atcctcaatc atcccctcat
     1861 agacctcgtg aatgaggatg ccccggacac gattatccaa ttcgtcatca ggaaggtcat
     1921 ctgctgatgc atcaagagct ttggaaagcc aaccacgtcg ggcacattga agccatactc
     1981 ggaggcgaga gggggaccaa atcttggagg tcggccattc caattccaat gttccaccca
     2041 tccgatgatc cattgattcg acatcaatca aatcaggaga tattggccgg ggatcaatgg
     2101 aaaccgagga tgatgcacca gtagaagagg agccccctaa aaccggccat tccggattca
     2161 ctactggaag agtcaccttg cggtgtttgg gtgtaggaac tatctccaga tgacgagtcg
     2221 acacaaccct agttcgaact gactcgggat gatagacaga tcctgaatca attacgagag
     2281 gttgtctccc catcctatca gacatcaagt cgtgttcgta acgagcgaat attgcggggg
     2341 cagacaaagg ggcattcgaa tctggatcct tccgctgtaa gaggcgagac ccttgattcg
     2401 ctctatcctc tcgtcgagag atgccatgac tactctctac gaccatacta ggatcatcaa
     2461 ttggatagga gaacacagtc gtagattcag cgatgagaca atgtaattcc tcaatcgtct
     2521 cccacgccca tccgtcagtt tctccaacat tcgtgggaag aatcgaagga agtgttgcct
     2581 tccactttcc atctcgacac cattcagcat atggagccac tggaggagtg gattcgtcaa
     2641 tgtgagtcga atcaacaaca atgacttctt tgccggaatg cagcaaagac gagagatgat
     2701 gtctagcttc acgaattggg ccatctggac gaagaatacc aagatgctga cgttcctcct
     2761 cggaaagaag tggagggagc cgaactcgga ggtcccaatt gtcagcaagg ggatcgagga
     2821 gaatcacaag atctgcatgg caacccagcg cctcctgtgg tgaacataag gtgaatcttc
     2881 caacagattt cgacgtatcc tgtaattctg cagagtcaat catcgagata atctggtctc
     2941 tccatgcttt gggttctaat atggaattga gacctagtgc tcgttcattc tctctaagag
     3001 aagaaactgc actcaacaat gtctgcaatc ctacaacacc atcctcgaca ttaccatcga
     3061 atctgaatgg gagagatgtg tggtccatca tactgacaac tcggtccaac cattcgtcag
     3121 gagttgtctc gacaatttcg aaaggcaagg cctctcctga actacagcca acatgattac
     3181 tttcatccat taggacctgt acatctgctt cgtcaagaat cggacgcatg gcgccaagga
     3241 gattcagaaa ccaccactgt gtagcttcca accttttacc tcggaaatcg tcatcagtat
     3301 cagccgatag ggctcgtaac caatccccga gaactcctac gcctccgata aggcggcgat
     3361 cccgtgctag agattccaat gaatcccgat caggtaaggg gtgaagatca ttccatagtg
     3421 ggtgagaatc aacactatct gggtcgaaaa tacgaactgt acgttgtacg gcaattgcga
     3481 ggattctttc taatgaaaaa ccatcttcac cgtgagacaa accgactgct gcggctaacc
     3541 aatgaacaaa ggggctactt cggagaggaa ttatacctcg cgatgttcga tgaccgattg
     3601 ccttgagttg atcaagatgg ctgcggggca aatccttacc attcggatga acaattagga
     3661 tgtcttcgat tcctgtattg atagcatggg ataccaacct acctaaagca gcggctgagg
     3721 cgtcgttctt acgaacgtga atacgatgga ggggtacatc tggatcagat cctccaatcg
     3781 gatgatctgg aatccattca ggcaagtcat ctgatgtctt cactggcgag atatcctcga
     3841 gaagccaacc atgcaatcct aatcgatggg aaccagaata gcagagttgg tgtatgggga
     3901 cacgagaggc tattgcttgg agtatctcag cctgaattgg cattagagtg ggtggttggt
     3961 caagtaggac aataccatca agatgctcga gagtgaaagc gggccgtttc tcatcaagga
     4021 gtgctgtaag aagtcgagga agaacccgat tcggatgagt cccattcagt ttttcctcta
     4081 cggtatcgag aaccgtctga agtccactga ggtgctcctc gagaacttca agaggtacat
     4141 tctgaaaccg caatactgaa tctagttcca gtaagtttct ggttttggta attggccatt
     4201 cccaatcagg gtgtggatgt agaatcggga aggaaagttt tgcagcctca acctgcatta
     4261 aacggtgaat tgtttgttca agtgcaggat tagatggaag aactctaggt tctcggagat
     4321 ccgcgaataa cttctttgtc aagcctccaa gagttagatg attcgtacga tcaat
//
LOCUS       DUKB01000211            3531 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_128717, whole genome shotgun sequence.
ACCESSION   DUKB01000211 DUKB01000000
VERSION     DUKB01000211.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_128717"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="HA345_07005"
     CDS             complement(<1..544)
                     /locus_tag="HA345_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85144.1"
                     /translation="MSGSRTLVLFLVSILIFSVLTPMSMSPASDTAYTSGRSVDVAID
                     QMEVISASADILGTPTLAPGDHVIRVRITNTGTSLATGTIELLEGPDFSSQTPVLDTQ
                     KSISVPAGGSEVHLLEFTKMSGNSAVTASVSASGDSEPSNNQMNLPAGLLTISSTPSH
                     ISVSDTIPNHGTTVASGPWVG"
     gene            complement(544..960)
                     /locus_tag="HA345_07010"
     CDS             complement(544..960)
                     /locus_tag="HA345_07010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85145.1"
                     /translation="MTVRVSRRARRFLRRIQKSREIPDLQVIANEIQNEVDARNITYE
                     EANQLGNQIQNRADMIDVSGLVYAISDRDTYRRTLEIYLKDGLLTRTEQMLLWDERRK
                     LGLTQEEHDRLIDKLITLYRSQGRSIRVQGPSGGDS"
     assembly_gap    1328..1660
                     /estimated_length=333
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1661..2186
                     /locus_tag="HA345_07015"
     CDS             <1661..2186
                     /locus_tag="HA345_07015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85146.1"
                     /translation="PEPVEEPEPVEEPEPEPLDLPSAPDLGDEEEVIGEEVEEVQEDL
                     FAERLGREGAKTGEVQISLIWFNKNDLDLSVVCPSGERISFDNKISNCGGRLDIDMNE
                     SGKSDEPVENVFWEKDAPKGRYRVFVEHFEKHDSTDVTEFSILVTVDGEPREFKGQIS
                     NKDPPQEVCFFDVE"
     gene            2370..3446
                     /locus_tag="HA345_07020"
     CDS             2370..3446
                     /locus_tag="HA345_07020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85147.1"
                     /translation="MVEFKLEVSESVAIRWMQEAIASGTSVEDWLIQCANRLDSRTSA
                     LGNENPHSTTPASEDTGTPGLRGLADRAWNRRARAADALLESKFGDRETLQLTSIRTD
                     APIGPNIGRLDDELLPPGLLRLLPLKHTLRLIWTMTGVTKDPVPDGELREKVSSMLEL
                     NGTRLSNEDDRDGRGRGERLSTGFSHLDDAARNRTVSWIIGSGQGSSKRSAMEIVGWT
                     TKDASGHRLTSHGLDLARLPNPVIDHEEGHRGAFSNLERGLILTSICHRLPLEWKIMR
                     TIIDGMRNGAVGNDRLDSRMMRRFGESTGYGWSNSTLQIRRVAAVTRMCELGLVVRQR
                     NGRKSVTRLVDNVDEILQFSESDD"
BASE COUNT          898 a          748 c          793 g          759 t
ORIGIN      
        1 ttccgaccca tggcccagaa gccacagtag ttccatgatt cgggattgta tcagagacag
       61 agatgtgcga aggtgtcgaa gatatagtaa gcaagcctgc tggcaaattc atttgattat
      121 ttgagggctc ggaatcacca ctcgcagaaa cagaagctgt gactgcagag ttaccgctca
      181 tctttgtgaa ctcgaggaga tggacttcag accctcctgc agggactgag atggacttct
      241 gcgtatcaag gactggagtt tgggatgaga aatctggccc ctctagcaac tcgattgtac
      301 cggtagcgag actggttcct gtgtttgtaa ttcgaacccg gattacgtga tcccctggag
      361 caagagttgg cgtaccaagg atatctgcag atgctgagat gacctccatt tggtcaatgg
      421 cgacatccac tgatcgccct gaagtatacg ctgtatcgct agcaggtgac atcgacattg
      481 gtgtaagaac gctgaaaatt agaatactca ctaggaatag aaccaatgtt cgacttccag
      541 acatcaggaa tcgcctcctg aagggccttg gaccctaatt gagcggcctt gactccgata
      601 gagggtaatg agcttgtcaa tcaatcgatc gtgttcttcc tgtgtcaagc cgagctttct
      661 tcgctcatcc caaaggagca tttgctccgt ccgagtaaga agcccatcct tcaaataaat
      721 ttcaagcgtt ctgcgatatg tatccctatc actgatggcg taaacgagcc ctgatacatc
      781 aatcatgtcg gctctattct ggatttggtt ccccagttgg ttcgcctcct cataggtgat
      841 gtttctcgca tcaacttcat tctggatttc attcgcgatg acttgcaaat cagggatttc
      901 ccgcgatttc tgaatgcggc gtaggaaacg acgtgctctc ctactcactc gcacagtcat
      961 ggcatggcct ccgctagtgg ttcaacgatt ccgaaaggat atgaatgaac cgcacaagaa
     1021 tggtttactt ccagagcaga accacccgaa acgaagacat acctcgccac gctacatcta
     1081 ctccgatgga ccccattagt gccactgtct tggcaacatt aggcattggg tccgctcaag
     1141 gcgtctacag gatcctcagg ggagacgcgc ggcgagcgat gctaccatcc atggcctcca
     1201 ttccagctcc agacattgac aaatctcttc gaagaacacg agggggcctc aatcgtagca
     1261 tcacactcag cgcagccccg gtacaggagc cccctgaacc agcacctgtc gaggaaccgg
     1321 aacctgtnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1381 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn accggaacct gtcgaggaac
     1681 cggagcctgt cgaggaaccg gaacctgagc cattggacct tccatcagcc cccgatttgg
     1741 gtgatgaaga agaggtgatt ggagaggaag ttgaagaagt ccaggaagat ctcttcgcag
     1801 aacggctagg acgcgagggt gcgaaaacag gtgaagtcca gataagcttg atttggttca
     1861 acaaaaacga tctcgacctc tcagtcgtct gcccatctgg ggaacgtatt tccttcgaca
     1921 acaagatttc gaactgcggt ggccgcctcg acatcgatat gaatgaaagt ggcaagtcag
     1981 atgagccagt tgagaatgta ttctgggaga aagatgctcc gaaggggcgt taccgcgtat
     2041 tcgttgaaca cttcgagaag catgactcta ccgacgttac tgaattcagt attcttgtta
     2101 cagtcgatgg cgaaccacgc gaattcaagg gccagattag taacaaggac ccaccgcaag
     2161 aagtatgctt cttcgatgtc gaatgatttc gaatcaaaaa cgattctata aatcgttttt
     2221 tatccattat tgattcaatt acaaaaaaaa tgaatttaga atttgaaata catatcttag
     2281 taattcgtta ttgacatgat ttattcaata taatgaatat taatcaatat aatagaatga
     2341 gttaataatg aattactaga gcgcgtaaag tggtggaatt caaactcgaa gtgagcgaat
     2401 ccgtcgcaat tcgatggatg caagaagcaa ttgcatcagg tacaagcgtg gaagattggc
     2461 tcattcaatg cgctaatcga ttggattcca gaaccagcgc cctaggtaac gaaaatccac
     2521 actctacaac acctgcatcc gaagatacag gcactcctgg gctgagaggt ttggcagata
     2581 gagcctggaa tcgccgggcg agagccgcag atgctttgct agaatcaaaa ttcggcgacc
     2641 gagaaactct ccaactaaca tcaattcgaa ccgatgcacc cattggacca aacattgggc
     2701 gactagatga tgaactccta cctccaggac tcctacgact gctcccattg aagcacactt
     2761 tgagattaat ctggactatg accggggtaa ccaaagatcc agtcccagat ggagagttac
     2821 gagaaaaggt atcgagcatg cttgaactca atggaacgcg tctttcaaat gaagatgatc
     2881 gcgatggaag agggcgtggt gagcgactat ctactggatt cagccatctc gatgatgctg
     2941 caaggaatcg gaccgtatcg tggatcatag gcagtggaca agggtcgtcg aaaaggtctg
     3001 caatggagat tgtgggctgg accacaaagg atgcatctgg acatcgacta acatcacatg
     3061 gcctggattt agcacgactt ccaaacccag tcatcgatca tgaagagggg catcgggggg
     3121 cattcagtaa tcttgagaga ggactcatac tcacttcaat ctgccatcgc ctcccattgg
     3181 aatggaaaat catgaggacg attatcgatg gaatgcgcaa tggtgcagta gggaatgatc
     3241 gtttggattc ccgtatgatg agacgatttg gagaatcaac gggatatggt tggtcgaatt
     3301 ctacgcttca gatacgaaga gtagcagcag tcactaggat gtgtgagctc gggctagtag
     3361 tccggcaacg taacggcaga aaatctgtga ctcgcctagt agataatgta gatgagattc
     3421 ttcaattctc tgaatctgat gattaatgat ggaaaccaag cattgatgcc atcgacaccc
     3481 accctcagac catgttctct gaaggagatg ctgcaccgga cttcaccgca a
//
LOCUS       DUKB01000212           10928 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_31421, whole genome shotgun sequence.
ACCESSION   DUKB01000212 DUKB01000000
VERSION     DUKB01000212.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 10928)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 10928)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10928
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_31421"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="HA345_07025"
     CDS             <1..320
                     /locus_tag="HA345_07025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85148.1"
                     /translation="PERGSAFSSLVTTCQLSKKPDLILAAIHYLREVEGQRDSPPREL
                     KQLFIDAGHDADDVEKWNISLYLNRLREQGRLTFPEDMPEKNRFMSLTDEGRAHLDSR
                     AAQ"
     gene            328..732
                     /locus_tag="HA345_07030"
     CDS             328..732
                     /locus_tag="HA345_07030"
                     /inference="COORDINATES: protein motif:HMM:NF013003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HIH85149.1"
                     /translation="MSDQEDQADPVDWSFQSKIDQDLRDSDLQNANLRRAILDGSNLQ
                     GSNLSGADLRNASLIGTDLMKCALDGADLRGARLTKAKLNLSNFQDAKMDGADLRGVR
                     GRYAIWRRANWWDAKMNEDLRKVLSKKWPKPE"
     gene            complement(734..1363)
                     /locus_tag="HA345_07035"
     CDS             complement(734..1363)
                     /locus_tag="HA345_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85150.1"
                     /translation="MEESFSIRWDEDEEESEGPAIAVPIRPQPGILRIIGSVLVIGGL
                     LALLSGASNLWTGMDDGPTDPAMYDQVTLQLQAAGEDVTSEEIASYYDAIAAKGYYEV
                     LGTLETCAGLLLLISGVLLFRRHSYGIRIGLTGGSLLLIDAAAGLYFLRSVEAPSAML
                     SLTLNILQVLVTTCGLFCTALPLLPLVLSGAREALDSNHASSLTSDESE"
     gene            complement(1389..1802)
                     /locus_tag="HA345_07040"
     CDS             complement(1389..1802)
                     /locus_tag="HA345_07040"
                     /inference="COORDINATES: protein motif:HMM:NF015048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HIH85151.1"
                     /translation="MAIELSRRVDWPMIDPANVVYYPQYWDLAHRFFEESWESICGID
                     YPTIISEHRLGFPAVATNSTHHAPLRYGDTAHCRLWVKEVGTSSIIWKYRFTDQKSNI
                     VWTAEVTTVCVDLDNFQPQPIPENIAESLRRCGED"
     gene            complement(1873..1946)
                     /locus_tag="HA345_07045"
     tRNA            complement(1873..1946)
                     /locus_tag="HA345_07045"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1909..1911),aa:Arg,seq:ccg)
     gene            complement(2035..2111)
                     /locus_tag="HA345_07050"
     tRNA            complement(2035..2111)
                     /locus_tag="HA345_07050"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2074..2076),aa:Arg,seq:gcg)
     gene            complement(2157..2396)
                     /locus_tag="HA345_07055"
     CDS             complement(2157..2396)
                     /locus_tag="HA345_07055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85152.1"
                     /translation="MGKQRAAREERLKREIRRYVSNNPECTASQIVAHLSIDLRMRNH
                     GLTPRKVGFFIPRFVDGVNWRLDSSTGKRLYSVAY"
     gene            complement(2460..2828)
                     /locus_tag="HA345_07060"
     CDS             complement(2460..2828)
                     /locus_tag="HA345_07060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85153.1"
                     /translation="MATSIEITKATLRERVVVDVNVWMDDPEDHDFSPRAHMSEGTLH
                     IQNAGQDEVSSTFDLEEEMLVAAERDRLIELRVKFGVHGMHGTLTHKTPLPCSGPNAK
                     KLAESRWKTLLPLEFPPKSR"
     gene            complement(2885..4060)
                     /locus_tag="HA345_07065"
     CDS             complement(2885..4060)
                     /locus_tag="HA345_07065"
                     /inference="COORDINATES: protein motif:HMM:NF012999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HIH85154.1"
                     /translation="MEGRRVGQGLLLTVLMLMLPLAGCTSAFNTVTPTARLSVDVDMI
                     DVGEAVNFDARASTSPDPTLIVDYRWDFGTSQRNTTQGYVSHVFDESGRFDIILTVVN
                     DIGGEDSLTVTIYVNEYPVAAVSGPTVVKTGTIVTMDGSTSSDPEGGVLQYAWDLDWS
                     MDSDADGNFQNDIDDTNNSATFIVGRAQNRTGSLTVTDDRGAATTIIWDLRILERTFN
                     VTWRHQTMKVSWDGYLKQGESYVINHIPGDGGRILEFNGTLELDRDFVPAGLPPEDNF
                     SMLLQIPESSWAAKAKTVQHNITEASTGSIERTNLNPYSTEAQTYTADSEEALLSTLI
                     SEPGARFGQGDWIWTITADESDPDLPIDGVDPDEGNNWTLEVEFVVLIPIILEVGLL"
     gene            4180..4989
                     /locus_tag="HA345_07070"
     CDS             4180..4989
                     /locus_tag="HA345_07070"
                     /inference="COORDINATES: protein motif:HMM:NF013122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HIH85155.1"
                     /translation="MVDDPFAGQRVVAFDLETTGLDVRKDRIVQYALIGSDDDGSTIT
                     VESLVNPQRRIPSQSSAVHGITDSDVRSASTFAEHVDQLSEILDGAIVIGHNIERYDW
                     RLLTAEYTRVGRLPPEPATMIDTLRLAKRLKIPGRHDLGTLCRSADITLNNAHNAAAD
                     AGATLMLLWRWMSRHPREFRRSPEELQAWISAGNTNQNALGPSLDDLDSMPGSGGRLR
                     IDGDSVVLAFGKHKARDILVVANEEPGYIRWLCSPAGPLNQEAIDAVKDLL"
     gene            complement(4995..6173)
                     /locus_tag="HA345_07075"
     CDS             complement(4995..6173)
                     /locus_tag="HA345_07075"
                     /inference="COORDINATES: protein motif:HMM:NF024117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HIH85156.1"
                     /translation="MTTPAHQLSPSSWNNYASCPRKYWLSRQRLPRKAGMAATIGTAV
                     HDSVEDFCNLDLSGQEADEVGWLPPTAKRILDLHWQKEKEIFLRTPRHPAFKDGEIVR
                     AHDLLIGSLNMLIANAKIGTAKMSEVSIAQWREVQDTVLAAEGTLRSPCGRLMGRLDL
                     LVKDLDEDRNPVGWIVADLKTGRPPPGGLYETVSRQLRFYRDMLLENNPNAPTVRAQG
                     WYSAGPKVYEAEGPSVLEDAFRAWEGMAITKEPLEATPDDDACRFCEWKAWCPAWFHA
                     RAEGNLPSPSGIFRDEVALILQFDEASGACMVELVSPKDEVGGIIPSGRTIGVICKGQ
                     ALDQMRDVMNSDHRGAVFLGSIRTNAKPWAMGDWSEVLPWAPLLESIRKAPRNKSEEE
                     "
     gene            6239..7048
                     /locus_tag="HA345_07080"
     CDS             6239..7048
                     /locus_tag="HA345_07080"
                     /inference="COORDINATES: protein motif:HMM:NF021287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome assembly chaperone family protein"
                     /protein_id="HIH85157.1"
                     /translation="MASEPILKISSDVDAEGALVVTCFPSVGYVTSIVAHYLIDQLEL
                     RFCGGVRASGLPAVCLVKDGQPMPPLRFYAGEPVCTVDGCDKLILIVSEIPVRNDMVL
                     PLTETLLDWSKEAKIAGGVLIDSFSHTDEHAHEIIDDDETEETILGIGATAATRERLE
                     KMDVQLLSQGVVAGMTGVLLGECRRRGLDTFAILAEANGPPGAGLPDARAASRIIEKL
                     DMLLPNLSLPTEPLIEEAERIEEQIREMLQVHLGKVAEDEENAGPSSMIYG"
     gene            complement(7049..9178)
                     /gene="ligA"
                     /locus_tag="HA345_07085"
     CDS             complement(7049..9178)
                     /gene="ligA"
                     /locus_tag="HA345_07085"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: protein motif:HMM:NF005932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase (NAD(+)) LigA"
                     /protein_id="HIH85158.1"
                     /translation="MEMNRQGGVTLDRVEHLAAEIARHSHLYYNLATPEIDDAEFDAL
                     WDELKRLSPEHPQLRRVGAEVPAGSVKVDHRFPMRSLDKATTDEEILHFVQETTAEGR
                     RFLAQPKLDGSALSLEYRRGRLVRAATRGNGERGEDVTANALRIPNIPHRLSWDGDCH
                     VRGEVVMRLDVFREKYADIAPNPRNLAAGSLRQKYVDSGKGDASDLTFLAYDARFIPS
                     DEAHPDSPKPLHFEHDSEIVHWLRSIGIEPAGDQVCEGDTVEKVTESMISQTKYWTDT
                     RSELPWEIDGVVFKLDDLSKRELLGMTAHHPRWALAWKFPPEEAVTVLMGVDWQTGRT
                     GAVTPVARVAPVVVSGVTVENTTLHNAGEVKRLGVQIGDKVRIVRRGDVIPKIIEVLG
                     PANSNDLTGRFHGDGAQFESTLPHRSVPNPPTSCPECASSLEIDGAFLRCNNLDCPAR
                     VVRTVLYWCRALEMDGIGQKLAEQLCDVGLVRTLPDLYRLSMNDLLTLDRMGEKSASN
                     VLSQLESTQSLMLSRFLSALGLPGIGPELATSIAAEVGDLENLMTMVEAKDKPVIDRL
                     VAIDGVGETVASSLLDGLAVRRSIVSDLAEILEITTETVSLTSSGVLEGKTFCITGAL
                     SRPRKEIALAIKASGGKVVSAVSGKLDYLVAGESAGSKLEKAQRLGVSILNESDLDTI
                     ISKGGDFEPQNNDESEVQRSGTLDDWI"
     gene            complement(9206..9466)
                     /locus_tag="HA345_07090"
     CDS             complement(9206..9466)
                     /locus_tag="HA345_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85159.1"
                     /translation="MRDPTMPPDFPSWTPDDSDRNRWDIRSRKAIIRRTRRVAIPHNA
                     HLVIRRRLRPIERQRIARLKGTRRRLLQTSIEFNSKFQKRWC"
     gene            complement(9553..>10928)
                     /gene="pruA"
                     /locus_tag="HA345_07095"
     CDS             complement(9553..>10928)
                     /gene="pruA"
                     /locus_tag="HA345_07095"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017950798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HIH85160.1"
                     /translation="NAQKDWIAIGLEARCAIFERAADLLATTWRAKANASTMLNQSKT
                     AFQAEIDAVCELVDFWRFNAYYARQFHDEFQPLHSPEGVINSTEIRPLEGFVLAITPF
                     NFTSISGNLPSAPALVGCTAVWKPSRNSIFSNYVIMKLMMEAGLPPGVINFVPGSGEA
                     ITSIALENPHFAGVHFTGSTNTFNGLWERIASALGNLASYPRIVGETGGKDFVVAHPN
                     CDHRALVIALLRGAFEFQGQKCSAASRAYIPRSVWESIKDELVEEVGRITMGDARDFT
                     NFMTAVIDQRSFDKITGYIQRAQTDPGCNIVCGGSSDDSEGWFIDPTIIVCDDPEYES
                     MIEEIFGPVLSIYIYEDDEFLDVLSMCDTASPYALTGSIFANDEKDIQTAFNALRFTA
                     GNFYINDKPTGAVVAQQPFGGARASGTNDKAGGPLNLLRWISPRSVKRTLSPAHEWGY
                     PFLQPDE"
BASE COUNT         2872 a         2792 c         2550 g         2714 t
ORIGIN      
        1 ttcctgagcg cggttctgca ttcagttcac tagtcacgac ctgtcaatta agcaagaagc
       61 ctgatctaat tctcgctgca atccactacc ttcgtgaagt tgaggggcaa agggactcac
      121 ctcctcgaga actcaagcaa ctcttcatcg atgctggcca tgatgcagat gatgttgaga
      181 agtggaatat ctccctctat ctgaaccgtc tccgtgaaca aggtcgactc accttccctg
      241 aagatatgcc cgagaagaat cgattcatgt ctctcaccga tgagggtcgt gcacatcttg
      301 attcacgggc cgctcagtga aggaccaatg tcagaccaag aagatcaggc ggatccagtt
      361 gactggtctt tccaatcgaa gattgatcag gatttgagag attcagatct tcagaatgcc
      421 aatctaagac gcgctatact tgatggttca aacctccaag gctcaaatct ctccggtgca
      481 gacctgcgaa atgcttccct cattgggact gatctcatga aatgcgctct agacggggcc
      541 gatctacgtg gtgcacgtct gacaaaagcg aaactaaacc tctcgaactt tcaggatgcg
      601 aagatggatg gagccgatct acgtggggtc cgtggacgat acgcaatctg gcgccgtgcg
      661 aactggtggg atgcaaagat gaatgaggat ctacgcaaag tgctctcaaa gaaatggcca
      721 aagccagaat gaatcattct gattcatctg aagttagtga agaagcatga ttcgaatcta
      781 aggcctcacg cgcgcctgac aatacgagag gtagtaacgg cagcgccgta caaaagagtc
      841 cacaagttgt aactaggact tggaggatat tgagagtcaa cgaaagcatc gcagacggag
      901 cctcaacaga acgaagaaag tagagccctg cagccgcatc tatgagaaga agagagcctc
      961 cagtaagtcc gattcgtatc ccataactat ggcgtcggaa taacaaaact ccactgatga
     1021 ggagcaagag gcctgcacag gtctccaatg tccctaggac ctcgtagtat cctttcgctg
     1081 caatcgcatc ataataagat gcgatttctt ctgatgttac atcctctcca gctgcctgaa
     1141 gttgtaaggt gacctggtca tacattgcag gatctgttgg cccgtcatcc attccagtcc
     1201 aaaggttgga agcgccactc agtaatgcaa gaagtccgcc aataaccaat actgacccga
     1261 tgattcggag aattcctggc tgaggtctaa ttggcacagc aatggcgggt ccttcagatt
     1321 cctcctcatc ctcatcccaa cggatagaga aagattcctc catagggtgc ggtgacctca
     1381 atcacgcatc aatcctcgcc gcatctgcgt agagattcag caatattctc aggaatcggt
     1441 tgaggctgaa aattatcgag atctacgcaa acagtcgtaa cctctgccgt ccaaacaata
     1501 ttcgacttct gatcagtaaa acgatatttc cagataatcg aggatgtgcc tacttcctta
     1561 acccagaggc gacaatgtgc agtatctccg taacgtaatg gcgcatgatg tgtagaattg
     1621 gtggcaaccg ctggaaatcc tagacggtgc tcagaaatta ttgttggata atcaatacca
     1681 caaatcgact cccatgactc ctcgaagaat cgatgtgcaa ggtcccaata ctggggataa
     1741 tataccacat tggctggatc tatcatcggc caatctacac gccgagaaag ttcgattgcc
     1801 atgattcaca ccttagccca tggcttccaa tctatttcgc tgatgtgggg cttctccatt
     1861 gaatcaatcg gatggaccca ccgcgattcg aacacgggtt tccagctccg gaggctagag
     1921 tgatatccag gctacactat gagtccaatg acacaaccag agtccacacc aatttcaacc
     1981 actcgggtac aatcagtttt cttacgctcc gctaatgcta agcagggtgg cgaatggcgg
     2041 acccaccgcg attcgaacac gggttacaag ctccgcaagc tcatgtgata tccaggctac
     2101 actatgggtc cagcggctcg gcgagatgtg ccatcggttt aaccccgacg gttgaatcaa
     2161 tatgcaacag aatagagtct ctttcctgtt gaactatcga gtctccagtt cacaccatcc
     2221 acaaatcttg ggatgaagaa gcccacctta cgcggagtga ggccgtgatt tcgcattcgc
     2281 aaatcaatgc tcaagtgagc tacaatctga ctggcagtac attcgggatt attcgaaaca
     2341 tatcttcgga tctcacgctt caatcgttct tcccgtgctg cacgttgctt gcccatggtt
     2401 ctatgtttac tggtaagcac ttgaaggcaa tctggggaga cccgggggcc caaggttgct
     2461 cagcgagatt ttggagggaa ctctagagga agaagggtct tccatcgaga ttctgcgagt
     2521 ttcttcgcgt taggccctga acagggaagg ggggttttgt gggtcaaggt accatgcatg
     2581 ccatgcacac cgaacttcac tcgtaattct atgagacgat cgcgctccgc agcaaccaac
     2641 atctcctctt caagatcaaa agtggatgag acctcgtctt ggcctgcatt ctggatgtgt
     2701 aacgtacctt ccgacatatg cgcacgtgga gagaagtcgt ggtcttcagg gtcatccatc
     2761 cagacattga catcgacgac tacgcgttca cggagagtcg ccttggtaat ctcaatggag
     2821 gtcgccatcg acccttccac ccagtccggg ttctaagggc ttcctttcaa gtcacacttt
     2881 ggaatcaaag caatccaact tctagaataa tagggatgag aaccacgaac tccacttcta
     2941 aggtccaatt atttccttca tctgggtcca caccatcaat tggtaagtcc ggatcggatt
     3001 catctgcagt aatcgtccaa atccaatctc cttgaccaaa tcgtgcgcct ggctctgaga
     3061 ttaatgtcga caacaacgcc tcttctgaat ctgcagtgta ggtctgtgcc tctgtagaat
     3121 atgggttgag atttgtacgt tcaatcgatc cagtcgatgc ttcagtgata ttgtgctgta
     3181 cggtcttcgc tttggctgcc caactggatt ctgggatctg taataacatc gagaagttgt
     3241 cctctggggg caatcctgca gggacaaaat ctcggtctaa ttccaatgta ccattgaact
     3301 ccagaatacg accgccgtct ccaggaatat ggttaatcac gtagctttct ccctgcttca
     3361 gatatccgtc ccaacttacc ttcatggtct gatgtctcca agtgacattg aatgttctct
     3421 caagaattcg caaatcccag attatcgtag ttgctgcgcc cctatcatca gttactgtca
     3481 gtgaacctgt acgattctga gccctaccta caatgaatgt ggcactatta tttgtatcat
     3541 cgatatcatt ctgaaagttt ccatcggcat cagaatccat agaccagtcg agatcccatg
     3601 catattgaag gacgccccct tctggatcag aagaagtaga gccatccatc gtgacgatgg
     3661 tgccagtctt gacaacggtt ggaccggata cagcggcaac aggatattcg ttgacgtaga
     3721 ttgttaccgt gagcgaatcc tcacccccaa tatcattgac cactgtcaaa ataatgtcaa
     3781 agcgaccaga ttcatcgaat acatgactca cgtatccttg agttgtgttc ctctgtgatg
     3841 taccgaaatc ccatcgataa tctactatta gggttggatc cggagaagtg gatgcgcgtg
     3901 catcaaagtt cacagcttca ccgacatcaa tcatgtcaac atcgacagag agacgggctg
     3961 ttggtgttac cgtattaaac gcactagtgc atccagccaa ggggagcatt agcatcagaa
     4021 ctgtgagaag taagccttga ccaacccttc gcccctccat agcccgaatt caaccctcac
     4081 cctgtttatg tctgacgcca tgattcgtca ttttctctac attctagttc aacttcgaaa
     4141 cgacgaggta tgaaaaacgg tcgcgttgga aggcgataca tggtggacga cccatttgcg
     4201 ggccaacgcg tcgtcgcgtt cgatttagaa accactggac tcgatgtccg taaagacaga
     4261 atcgttcagt acgcactcat cggaagcgac gatgatggtt caacaattac tgtagagtcc
     4321 cttgtcaatc ctcagcgacg tattcctagt caatcgagtg cagttcatgg catcacagat
     4381 tctgatgttc gttcagcaag cacattcgca gaacatgttg accagctgag tgaaattctc
     4441 gatggagcca tcgtaattgg acataatatc gaacgctacg attggcgact acttactgca
     4501 gaatatactc gagttggtcg cttaccccct gaacctgcaa caatgattga cacactacgt
     4561 ctcgccaaac gattgaaaat tccaggaaga cacgatctcg gaactctatg tagatctgca
     4621 gatatcactc tgaataatgc tcacaatgca gccgctgatg ctggagcgac gctgatgctt
     4681 ctgtggcggt ggatgtcaag gcatccccgt gaatttcgta gatctcctga ggagttacag
     4741 gcatggatct ctgctggaaa cacaaatcag aatgcacttg ggccatcctt agacgacctc
     4801 gattcgatgc ctggttcagg tggacgtctt aggatagatg gagatagtgt ggtactcgca
     4861 ttcggtaagc acaaagcaag agatatactc gttgttgcaa acgaagaacc cggatatatc
     4921 cgctggctat gctctccagc tggaccgttg aatcaggaag ccatagacgc agtgaaggac
     4981 ctgctctgaa tatttcattc ttcttcggat ttattacgag gcgccttacg aattgactca
     5041 agaagtggag cccatggaag aacctcgctc caatcaccca tagcccatgg ttttgcatta
     5101 gttcggatag agccaagaaa gaccgctcca cgatggtctg aattcatgac atctcgcatc
     5161 tgatcgagtg cctgtccttt gcagattact ccaattgtgc gacctgacgg gattatccct
     5221 ccaacctcat ccttaggact cacgagttct accatgcaag caccacttgc ttcatcgaat
     5281 tggagaataa gagcaacctc atcacggaaa attcctgacg gtgaaggcag gttaccctca
     5341 gctcgtgcat ggaaccaagc tgggcaccat gctttccatt cacaaaaccg acacgcgtca
     5401 tcatctggag ttgcttccaa tggttccttc gtgattgcca tcccttccca tgcacggaat
     5461 gcatcttcaa gcactgaagg gccctcagcc tcgtacacct ttggcccagc ggaataccaa
     5521 ccctgagcac gcacagtggg tgcattcgga ttattttcca acagcatatc tcgatagaat
     5581 cggagttgac ggcttactgt ctcatagagg cccccgggag gtggtcgccc cgtcttcagg
     5641 tctgcgacaa tccatccgac tgggttacgg tcctcatcga gatcctttac gagaaggtca
     5701 agtcgcccca tcagacggcc acatggtgag cgaagtgttc cctccgctgc tagaacagta
     5761 tcctgtactt cacgccactg agcaatggat acctcggaca tcttcgccgt accaatcttc
     5821 gcgttagcga tgagcatatt gagagagcca attagaagat catgagcacg aacaatttcg
     5881 ccatccttga aagctggatg tcgaggtgtt ctaaggaaaa tttccttctc cttttgccaa
     5941 tgaagatcga gaattcgctt cgcggttggt ggtagccaac caacctcatc cgcctcctgc
     6001 ccagaaagat cgaggttaca gaaatcctcc acactatcgt gcactgcagt tccaatcgtc
     6061 gctgccatcc ctgccttccg cggaagacgt tgccttgaca accagtactt acggggacaa
     6121 gatgcgtagt tattccacga agagggtgac aactgatgtg ctggagtggt catagtcaca
     6181 tcctcgatta cacatggtta ggcccaatga ttaacaccat cggccccaat cagtagatat
     6241 ggcgagcgag ccgattctaa agatctcgag tgatgtggat gccgaaggtg cgttggtagt
     6301 tacctgcttt ccgtcagtag gttatgtgac atctattgtt gcacattatc tcattgatca
     6361 acttgaactg aggttttgcg gaggtgtccg tgcatcagga cttcctgccg tctgtctagt
     6421 gaaagatggc cagcctatgc ctcctctccg attctacgcg ggcgagccag tttgcacagt
     6481 cgatggctgc gacaagttga ttctgattgt ctctgaaatc ccagttcgca acgatatggt
     6541 cctccctcta accgagactt tgttggattg gtccaaggag gcaaagattg ctggaggagt
     6601 actaatcgat tccttctccc acaccgatga acacgctcac gaaattattg acgatgatga
     6661 gacagaggaa accattctgg gcataggtgc aaccgcagct acgcgcgaac gattagagaa
     6721 aatggatgtt caattattga gtcaaggcgt tgtcgctggg atgaccggag ttctacttgg
     6781 tgaatgccga cgaagaggtc tcgatacttt cgcgattctc gccgaagcaa acgggccacc
     6841 tggcgcggga ctacctgatg caagagcagc ttcccgtatc atcgaaaaac tcgacatgtt
     6901 gctccccaat ctttccctcc ctaccgaacc tctcatcgaa gaagcagaac gaattgaaga
     6961 acagattcgg gaaatgctcc aggttcacct cggtaaggtg gctgaagacg aagagaatgc
     7021 gggtccttct tcgatgattt acggttaatc agatccaatc atccaaagtt cctgaccgtt
     7081 gaacctctga ttcatcattg ttttgtggct caaaatcccc tcctttggag atgattgtat
     7141 ccaaatctga ttcattcaag atcgatactc ccagacgttg tgccttctcc aactttgagc
     7201 cagcagattc accagcgaca aggtagtcca atttacccga aactgcactg acaaccttgc
     7261 caccagatgc tttgattgca agcgcaattt cctttcgagg acggctaagc gcccccgtaa
     7321 tgcagaatgt cttaccctcc agcacacctg aagatgtgag agacactgtc tcagtcgtaa
     7381 tctcaagtat ttctgctaga tctgacacaa ttgagcgacg cactgccaat ccatcaagaa
     7441 gtgaagatgc gactgtttct ccgactccat caattgcaac aagacgatca attacaggct
     7501 tatcttttgc ctcaaccatc gtcatcaaat tctctaaatc gccaacttca gcagcaattg
     7561 aagtagcaag ttcggggcca atccccggta gaccgagagc cgataggaat cgcgataaca
     7621 tcagagattg agttgattcc aactgagaga gaacattaga ggcgctcttc tcacccatgc
     7681 gatccaaggt aagtagatcg ttcatactca atcgatagag atcaggaagg gttcgaacta
     7741 gccctacatc gcagagttgc tctgcaagtt tttgaccaat cccatccatc tcgagggcgc
     7801 gacaccagta gaggactgtg cgaacaacgc gggctggaca atcgagattg ttacatcgaa
     7861 gaaaagcgcc atcaatctca agcgacgatg cacattctgg acaagatgtt ggtggattag
     7921 gtactgaccg atggggaagt gtcgattcaa actgagcccc atctccatga aatcgccctg
     7981 tcaaatcatt cgaattggct ggccccaata cctcgataat ctttggaatt acatcgcctc
     8041 tgcgcacaat cctaaccttg tccccaattt gaactccgag acgcttgacc tctcccgcat
     8101 tatggagggt agtattctca actgtcactc ctgaaacgac aactggtgca acgcgtgcaa
     8161 ctggggttac tgcgcctgtt cttccagtct gccaatccac acccataagc acggttaccg
     8221 cttcttccgg agggaacttc catgcaagag cccaacgagg atgatgtgca gtcattccca
     8281 gtaattctct cttagaaagg tcgtcgagtt tgaacaccac gccatcaatt tcccatggaa
     8341 gctcggaccg agtgtcagtc caatacttgg tctgagaaat cattgattct gttactttct
     8401 ccacagtatc gccctcacaa acttggtctc ccgctggctc gataccgata ctacgcaacc
     8461 aatggacaat ttcgctatca tgttcaaaat gaaggggttt aggactgtcc ggatgagctt
     8521 catccgaagg gatgaagcgt gcgtcgtaag caaggaaggt tagatctgaa gcatcgcctt
     8581 tacctgaatc cacatacttc tgacgaagag aaccagctgc aagatttctt ggattaggag
     8641 caatgtcagc gtacttctcc ctaaacacat caaggcgcat tacaacctca ccacgaacat
     8701 ggcaatcacc atcccaagaa agacgatgag gaatgttagg gattctcaga gcgtttgctg
     8761 taacatcctc gccacgctca ccattaccac gggttgctgc acgtacaagc cggccccgtc
     8821 gatattcaag cgaaagagcc gatccatcga gtttaggttg agcgagaaag cggcgaccct
     8881 cggccgtcgt ttcctggacg aaatgaagaa tctcctcatc tgtcgtggct ttgtcgagac
     8941 tcctcatagg aaaacgatgg tctaccttta ccgagccggc cggtacctct gcaccaactc
     9001 gtctaagttg agggtgttct ggagaaaggc gctttagttc atcccacaat gcatcgaatt
     9061 cagcatcatc aatctctgga gttgctagat tgtagtatag gtgggaatgg cgggcaatct
     9121 ccgccgcaag atgctcgaca cgatccaaag ttaccccccc ttgtctattc atctccacga
     9181 caggcaatga acctctttac tctcctcagc accagcgctt ctggaatttc gaattgaact
     9241 cgatagaggt ctgtaaaagg cgtctgcgtg ttcctttcaa tcgtgcaata cgttgacgct
     9301 caataggacg taagcgtctt ctaatcacta gatgggcatt gtgaggtata gcgactcttc
     9361 gagttcggcg aatgatggcc tttcgtgaac ggatatccca gcgattccta tcggaatcat
     9421 ctggtgtcca agatggaaaa tccggaggca tggttgggtc gcgcaaggtc cggatggcat
     9481 tcgagatagg acatcaacct taccatcttc ctctcacatg attcaacact ggcaaaggag
     9541 cagtggcgtg tttcactcat ctggttggag gaatgggtag ccccattcat gcgctggcga
     9601 tagggtccgc ttaaccgaac gagggctaat ccaacgaagt aagttgagag gtccgcctgc
     9661 cttgtcgttt gttccactag cacgagcgcc tccgaacggt tgttgagcga cgactgcgcc
     9721 ggttggcttg tcattgatgt agaagtttcc cgctgtgaag cgcaacgcat tgaaggcggt
     9781 ctggatatct ttctcatcat tagcgaaaat tgaacccgtg agtgcgtaag gtgatgcagt
     9841 atcacacata ctcaagacat caaggaattc atcatcctca tagatgtaga tcgacaaaac
     9901 gggcccgaat atctcctcaa tcattgattc atactctgga tcatcacaga cgatgatagt
     9961 tggatcgatg aaccatcctt cagaatcatc actgctacct ccacaaacaa tgttacaacc
    10021 aggatccgtt tgagctctct ggatatatcc tgtaattttg tcaaaggaac gttggtcaat
    10081 tacggcggtc ataaagttcg taaaatcgcg ggcatcgccc atagtaatac gtccaacctc
    10141 ctctacgagt tcatctttga tagattccca gacagaacgg gggatatagg ctcgacttgc
    10201 tgcactacat ttctgacctt ggaattcgaa agcacctcga agaagtgcaa taacaagtgc
    10261 acgatggtcg caatttggat gggcaacgac gaaatctttc ccaccggtct caccgacgat
    10321 acgcggatag gatgcaagat taccgagggc tgaagcaatc cgttcccata ggccattgaa
    10381 ggtgttcgtg gaaccagtga agtggactcc tgcgaaatgg ggattctcca atgcgatgct
    10441 agtaattgct tcacctgaac cgggaacgaa gttgatgacg cctggtggga ggcctgcctc
    10501 catcatcaat ttcataatta cataatttga gaatatggaa ttacgacttg gcttccatac
    10561 tgcagtacaa cccacaagtg ccggtgcact cggaagattt ccagagatac ttgtgaaatt
    10621 gaaaggagtg attgcaagaa caaatccctc aagaggtcgt atctctgttg aattaattac
    10681 gccctcagga gaatggagtg gttggaattc gtcatggaat tgacgagcat agtaagcgtt
    10741 gaatctccaa aagtccacaa gttcacaaac tgcatcaatc tctgcttgga atgctgtctt
    10801 tgattgattc agcatggtgg aagcgtttgc tttcgcccgc catgttgttg caagtaggtc
    10861 agcggcacgc tcgaaaatag cacatcgtgc ctcgaggcct atcgcaatcc aatccttctg
    10921 cgcattaa
//
LOCUS       DUKB01000213            3662 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_26667, whole genome shotgun sequence.
ACCESSION   DUKB01000213 DUKB01000000
VERSION     DUKB01000213.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3662)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3662)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3662
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_26667"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..433
                     /locus_tag="HA345_07100"
     CDS             <1..433
                     /locus_tag="HA345_07100"
                     /inference="COORDINATES: protein motif:HMM:NF014035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HIH85161.1"
                     /translation="TVRRIRHGRSEKDGGEVESLPLRAGVGFGGMVSSVLAIGAGAVY
                     IPVLNQFGGLGSRRAIGTSLGLMMVVVPIAVLVHGLLYSDPWPQVDVLAFLVLGVIAG
                     SVIGARVGLRISDPTILRIFAALLLIILSRYAWDLANQMLF"
     gene            complement(434..1708)
                     /locus_tag="HA345_07105"
     CDS             complement(434..1708)
                     /locus_tag="HA345_07105"
                     /inference="COORDINATES: protein motif:HMM:TIGR00261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HIH85162.1"
                     /translation="MKDEDTREGPVIRDSIVMGDVIHNVVHNHFPDNEENNTGTSTSV
                     AVVDIGDNIRLVGTAHISRASAELVKRQIEIYHPERIAVELDESRLIALEDPQTFDEE
                     TLGVAIRNGRAPLLLFQAMLATQQRKMGLETGEMPGVDLLTAVEEAREREIPFALVDR
                     DVRITLRRAWAKMGLIQRFRLLTALIAPEEEEEIDVDAIPEDLDLISSMMEELRQMIP
                     AAGEVLIDERDRYLGERIRQESTKGRVLAVIGAGHLSGVEDVLRGDPTPQEHLKEIDS
                     TPPPGLIRKVIPYALPALMIGVVAFLLARGDTQGLLDSTLLWLGINAACAGLSVLVVG
                     GHPISILTAAIASPITSLNPTLAAGWFAGAAQLKFSAPRNKDLQEFLLLDSLRLLFTN
                     RAGRVLLVTVMGNIGSSIGAWVAGPLILGSVL"
     gene            complement(1705..2547)
                     /gene="folP"
                     /locus_tag="HA345_07110"
     CDS             complement(1705..2547)
                     /gene="folP"
                     /locus_tag="HA345_07110"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009801858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HIH85163.1"
                     /translation="MPDWSTILRRRPDGRPRIMGVLNVTPDSFHADSRTNGIEAALKQ
                     ASKMQGEGADWIDIGGESTRPGADPVSIDEEKIRVIPIIEAVRRLHPEIAISVDTRRP
                     EVAHLALEAGANLINDVSGLRDPEMVELVLSTGAGVCIMHMQGDPKSMQDRPNYTDAR
                     TDVASVLLHRAHDLIESGHPPERICLDPGIGFGKRLEDNLALLSDADWIRGPHQLPVL
                     WGVSRKSMFRDLLNRTETSERLAGTLGVAAHAQKVGVDILRVHDVAEHVDLGRTLAEL
                     EARR"
     gene            2603..3232
                     /locus_tag="HA345_07115"
     CDS             2603..3232
                     /locus_tag="HA345_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85164.1"
                     /translation="MGPEDALSSNGGEAEMSRLSVSGTLSVPDKEQLELAEAILARLN
                     PADSHELRQMSTRFGLVSGMLLMIVALFWFLAIHVAGNEWGGNSGPSSILFDLNFSQI
                     SWLVPVLVFLATLLVSLSRERGGAITATLGGVFLILVIYLAIEPIGHAMLATEGSDLM
                     ISLMQTVRLGILGVLVHYSARHFLDAMLVTWVRSVLSGFDVVLAPQDED"
     gene            3273..>3662
                     /locus_tag="HA345_07120"
     CDS             3273..>3662
                     /locus_tag="HA345_07120"
                     /inference="COORDINATES: protein motif:HMM:NF014096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(56)-2'-O)-methyltransferase"
                     /protein_id="HIH85165.1"
                     /translation="MSSGPPIHILRLGHRRERDKRITSHLGLTARAFGADCFHLAGEE
                     DPNVLETLASVTDRFGGDFEARHEKRPLGWLRRFANEDAGDGSPGVAIHLTMYGRPWR
                     EVIPMLRRDRPMAIVVGGAKVPGEVYGI"
BASE COUNT          766 a          903 c          976 g         1017 t
ORIGIN      
        1 aacagtacgg cgaatccgtc atggacgttc tgaaaaggat ggtggtgagg ttgaatcgct
       61 tccattacgc gcaggtgttg gtttcggtgg gatggttagt tcagtccttg caattggagc
      121 tggggcggtc tacatcccag tattgaatca atttggcgga ctcggctcac ggcgagcgat
      181 tggcactagc cttggattga tgatggtggt tgttccaatc gcggttttag tccacggttt
      241 actatactct gacccttggc ctcaggtcga tgtattggcc tttcttgtgc ttggcgttat
      301 cgcagggtca gtcattggag ccagagtcgg tttacgtatc tcggatccga ctattctccg
      361 tatcttcgcg gcactacttc tgattattct ctctcgttat gcatgggacc ttgctaatca
      421 gatgctgttc taatcagagt acggatccaa ggattagtgg gcccgcgacc caagcaccga
      481 ttgaggatcc aatattgccc ataacggtca cgagtaagac gcggccagcg cgatttgtga
      541 agagtaggcg taggctgtct aagagtagga actcttggag atctttgttc cttggtgcac
      601 taaatttcag ttgagccgct ccagcaaacc atcctgctgc caatgttgga tttagtgatg
      661 tgataggtga tgctattgca gcagtcagaa ttgagatggg atgacctcct acaactagga
      721 cagataaacc ggcacaggca gcattgattc ctaaccatag aagtgtacta tcgagtagcc
      781 cttgtgtatc gccccttgcc agaaggaagg ccacaacgcc gatcattaag gcaggcagtg
      841 cgtatgggat taccttacgg attagccctg gaggtggagt tgaatcaatt tctttgagat
      901 gttcttgtgg agtagggtct cctcttagga catcttctac tccagataga tgccctgcac
      961 cgatgactgc tagcactcgt cctttagttg actcctggcg aattctttca ccaaggtagc
     1021 ggtctctctc atcgattagg acctctcccg cagcggggat catttgtctt agttcctcca
     1081 tcatgctact gatgagatct aggtcctctg ggatagcgtc gacatcaatc tcctcttctt
     1141 cttcaggtgc aattaatgcc gtgagaagac gaaatcgttg aattaatccc attttcgccc
     1201 atgctcttcg aagggtgatg cgaacatctc ggtcaaccag tgcaaaggga atttctcttt
     1261 ctctggcttc ctctacagca gtgagtaaat ccacacctgg catttctccg gtttccaaac
     1321 ccatcttcct ttgctgagtc gccagcattg cttggaatag aagtagtggg gcacgaccat
     1381 tacggattgc aactcctaga gtttcttcat cgaaggtttg ggggtcctct aacgcgataa
     1441 gtcgcgactc atcgagttcg acagcaattc gttcgggatg gtaaatctca atctgtcgct
     1501 tgactagttc agcagatgca cggctaatgt gtgcagtgcc aactagacga atattgtcgc
     1561 cgatgtctac tacggctact gaagtcgaag ttccagtgtt gttttcttca ttatcgggaa
     1621 aatggttgtg gacaacattg tgaatgacat cgcccatgac tatgctatct cggatgactg
     1681 gcccctcgcg agtatcctca tctttcatct tctcgcctcc aattcggcga gagtccgccc
     1741 aagatccaca tgttctgcga catcatgtac tcgtaagata tcgacaccta ctttctgtgc
     1801 atgtgcagcg actcctaatg tccctgcgag acgttcactt gtttctgttc gattgagtag
     1861 gtctctgaac atcgatttcc tactgactcc ccaaagaaca ggtagttggt gtgggccacg
     1921 tatccaatca gcatcggaga gtagggcgag attgtcttct aaccgcttgc caaatccaat
     1981 tcctggatcg aggcagatcc gctccggagg gtggccggat tcgattagat catgagcacg
     2041 gtggagtagt acgcttgcga catctgtacg cgcgtcagta taattcggtc tatcttgcat
     2101 cgatttcggg tcaccttgca tgtgcatgat gcacacgcca gcacctgtac tgagcacgag
     2161 ttcaaccatc tcagggtctc gtagccctga tacgtcgttg attagattgg caccggcttc
     2221 gagagctaag tgtgcgactt ctgggcgccg agtatcgaca gatattgcaa tttcggggtg
     2281 taatcttctg acagcttcga tgattggtat gacgcgtatc ttctcctcgt cgatgctcac
     2341 agggtctgct ccgggcctcg ttgattcgcc gccgatgtcg atccagtcgg caccttcgcc
     2401 ttgcattttg gaggcctgtt tgagggcagc ctctatccca ttggttcgtg aatcagcatg
     2461 gaatgagtca ggtgtcacat tcagaacgcc cattattctg ggcctcccat cgggtcggcg
     2521 acggagaatc gtggaccagt cgggcatccg agcctgcgag tcaaggcatg ctttatcatg
     2581 tgctgggcgt gagtgcttga gcatgggtcc ggaggacgct ctctctagca atggagggga
     2641 agcagagatg tcgaggctgt cagtaagcgg aacgctgagc gttccggata aggaacaact
     2701 agaactcgct gaagctattc ttgcccgttt gaatccagca gattctcatg aacttcggca
     2761 gatgtctacc cgattcggtc tagtttccgg aatgcttctc atgattgtcg cactcttctg
     2821 gttccttgca attcatgtcg ctggaaatga atggggaggt aattctggtc cgagttccat
     2881 cttgtttgac cttaacttca gccaaatatc ctggttggtc ccagttcttg tcttcctcgc
     2941 aaccctcctt gtctcgctct ctagggagcg cggaggtgcc atcactgcga ccctcggagg
     3001 cgtattcctg attctcgtca tctacctagc aatcgaaccg attggacacg cgatgctcgc
     3061 tacagagggt tctgatctca tgatatccct catgcaaact gtccgtctgg ggattcttgg
     3121 cgttcttgtc cattatagtg ctcgccattt cctcgatgcg atgttggtca catgggtccg
     3181 ttcagttcta tctggatttg atgttgttct cgctcctcag gatgaggatt aactagcgga
     3241 atccccaaag cgtacggcaa gagccgatgt ccatgtcctc gggcccgcca atccacatct
     3301 tgcggctggg gcatcgtcgt gagcgtgaca agcgtatcac ctctcatcta ggtctgaccg
     3361 cacgtgcatt cggggcagat tgtttccatc ttgcgggaga ggaggatccg aatgttttgg
     3421 agacactagc gtctgtaacg gatcgttttg gtggtgattt tgaggcgcgg catgagaagc
     3481 gacccttggg gtggttacgt cggtttgcga acgaggacgc aggcgatggt tcaccaggtg
     3541 tggcaatcca tttgacgatg tatggtcgac cctggcgcga ggttatcccg atgcttcgaa
     3601 gggatcgtcc gatggctatc gtggtaggtg gtgcgaaagt tccaggcgag gtgtacggga
     3661 tc
//
LOCUS       DUKB01000214            3082 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_110050, whole genome shotgun sequence.
ACCESSION   DUKB01000214 DUKB01000000
VERSION     DUKB01000214.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_110050"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2154)
                     /locus_tag="HA345_07125"
     CDS             complement(<1..2154)
                     /locus_tag="HA345_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85166.1"
                     /translation="MKERLLVLLMLLSVLSPLVQPPTALEEDPVQSATIQAPLPSNDW
                     GEALAGADITHFGVDWAVQSTRSLREFNILHLLHGGETSHSDNYSDLDMVLDRFGGMH
                     ACVHNGTSGSLEYFHLNSTGIVVRTIVDDHTTNVVGQSCDIELDARDRARIAYLDVTA
                     NELKFAIDTPYHYVNLQDWHVRTVTDFGTVTGPIDLVVLSGDEDFSGGAGTDVVLWID
                     SSTDYLHASYYTSTYWEHEPVIESAIEGFSARQEGTSVHILHEVSGLIRVAEWPSMNM
                     TNIDAGAYIGAPLDDDGQGDDIQTVYAGENETLIQFARSLSGRREGRITIDPVETITD
                     PDGIDSSPGLIQGDFDCDGVSDIVVLTGDEIGIHRGRTSGVNPLPDSTIALTLGEHYA
                     EVADMNVDGCDDLLLGSSGEDSAEIHLGTVSGLQLFWNHTGDQGSGFGAKIVPIGDVQ
                     NDGYEDWAVLANQESGSGSSIGRIHIFHGGLSPPSSSGLVLTGSGTNLQYGWAIEPLG
                     DIDGDGFDDMVISSAGGLTDLTGYGRVDLHTGSAIGHSTSPDSTWTRTLQGTFLGYAV
                     EVIGDVNGDGFNDLGIGEPYVDSAGPSSVGALHVLFGSASGFGGTYNQTIDGPSAGSR
                     LGVHMAAAGDVDRDGYDDVWAIRPGVGNDGDLILLWGSSTGLLPTPRIYEMEDLSDVV
                     RLSDIDGDGQEEWIFVGVGDLPIHEHLDFEIASIPG"
     gene            2276..2896
                     /locus_tag="HA345_07130"
     CDS             2276..2896
                     /locus_tag="HA345_07130"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR01378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HIH85167.1"
                     /translation="MTTLLCLPGKDLDKIHVPPHTLSIGVDSGADNALDYGIECSMIV
                     GDLDSVNRTRHINAEFIELPSQEKNDLEKALDFCLDRGWTDIMIIGMRGGRPDMEMAN
                     IAAVMAADASLQIQMLHPGMLALRVNSLNPLDMIAPIGTQVSIFTNTLTVVQTSGLEW
                     DIDGVLEPGSRGVSNLTKEANFTIEGESNTLVFIGNNQPSNGTQDA"
     gene            complement(2866..3069)
                     /locus_tag="HA345_07135"
     CDS             complement(2866..3069)
                     /locus_tag="HA345_07135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85168.1"
                     /translation="MRRGPRDSMGSLEDGLLVPPPEIDPVDESTDELPTYTDPQGITW
                     RQHPDGRMDWWDGAQASWVPFEG"
BASE COUNT          858 a          837 c          692 g          695 t
ORIGIN      
        1 acccgggata cttgctatct caaaatcaag atgttcgtgg ataggaagat cgcctacccc
       61 gacgaaaatc cattcctcct gaccatcacc atctatgtca gataaccgaa cgacatctga
      121 gaggtcctcc atctcatata ttcgaggagt gggaagaagg cctgtcgagg acccccatag
      181 gaggatgagg tcgccatcat tgccgacacc aggacgaatt gcccagacat catcgtaacc
      241 gtcacgatcc acatcaccag cagcggccat gtggacgcct aaacgggacc ctgctgatgg
      301 accatcgatt gtctgattat aggtgcctcc gaaaccagag gcactaccaa acaaaacatg
      361 taatgctcct actgaactgg gacctgctga gtcaacatat ggctcaccaa taccgagatc
      421 attgaagcca tcaccattca cgtccccgat gacttccaca gcatatccta ggaatgtacc
      481 ttgcagagtt cgagtccaag tggaatctgg agaagtcgaa tgaccgatgg cactacctgt
      541 atgcaaatcg acgcggccgt atccagtgag atcggttaaa cccccggctg aagaaattac
      601 catgtcatcg aagccatcgc catcgatatc accaagaggc tcaatcgccc aaccatactg
      661 caaattagtg ccgctgcctg ttagaacaag tccggaagaa gatggaggcg ataatcctcc
      721 gtgaaagata tggattcgtc caatggacga acctgaaccc gattcctgat ttgctaggac
      781 tgcccaatcc tcatacccgt cattctgtac atcaccgatt ggaacaatct ttgctccaaa
      841 tccagaacct tggtccccag tatggttcca aaacaactgc agcccactaa ctgtcccgag
      901 gtgtatctca gcgctatctt ctcccgaact ccccaacaac aagtcatcac aaccatcgac
      961 gttcatgtcg gcaacctctg catagtgctc acctaaggtc agagcaatcg tagaatccgg
     1021 taaggggttc acaccgcttg tccgtcctcg atgaatccca atttcatcac ccgtgaggac
     1081 tacaatatca gaaactccat cgcaatcgaa atcaccttga atcaacccag gagaagaatc
     1141 aatcccatct ggatcggtaa tagtttcaac agggtcgatt gtgattctac cctcacgtcg
     1201 gccactcaaa cttcgagcga actggattaa cgtctcattc tctccagcat atacagtctg
     1261 aatgtcatcg ccttgaccat catcatccag aggtgcgcca atgtaggcgc ccgcatcgat
     1321 gtttgtcata ttcattgaag gccattcagc tacacgaatc aaacctgaaa cctcgtggag
     1381 aatatggaca gaggtgcctt cttgacgtgc agaaaaaccc tcgattgcag actcgattac
     1441 gggctcatgc tcccaataag tcgaggtata gtaagacgca tgcagataat ctgtactaga
     1501 gtcaatccac agaacaacat ctgtaccggc gcccccgcta aaatcctcat ctcctgagag
     1561 gactacgagg tcaattggac ctgtaacggt tccaaagtca gttacagtcc tcacatgcca
     1621 gtcctgtaaa ttcacgtaat gatacggcgt atctatcgcg aacttcaact cattagccgt
     1681 gacatcgagg taagcaattc gagccctgtc ccttgcatcc aattcgatat cgcatgattg
     1741 gcccacaaca ttagtcgtat gatcatcaac gattgttcga actactatac cagttgaatt
     1801 gagatggaag tactctagag atccagaggt tccgttgtgc acgcatgcat gcataccacc
     1861 aaaacgatcg aggaccatat ccagatccga gtaattatcc gaatgggacg tttcccctcc
     1921 atggagtaaa tgaaggatat tgaactcacg cagagaacgc gttgattgga ctgcccaatc
     1981 tactccaaag tgggtgatat cagcccctgc caatgcctcc ccccaatcat tggatggtaa
     2041 cggcgcttgg attgtggcac tttgcactgg atcctcctct agagccgtgg gcggctgaac
     2101 gagaggagag agaacagaga gtagcatgag aagaacgagg aggcgctcct tcaccacttt
     2161 caccgccgta tggccgcacg gccacagcgc acctactcgc atccatgtcc taaagggttc
     2221 agccttgacg actcttcatc ggataaatca agacggagga cctctagttc ggtacatgac
     2281 taccctcctc tgtttaccag ggaaggattt ggacaagatc catgtcccac cacatactct
     2341 ctcgattggt gtggattcgg gagcggacaa tgctctagat tacggaatcg aatgtagtat
     2401 gatagtgggc gaccttgatt cagtaaaccg aacacgccac ataaatgcgg aatttatcga
     2461 gctcccatca caggagaaaa atgaccttga gaaagcatta gatttctgcc tcgaccgcgg
     2521 ttggaccgac atcatgatca ttggaatgcg tggcggacgt ccagatatgg aaatggctaa
     2581 cattgccgca gtgatggctg ccgatgcttc acttcagata cagatgctgc atccaggtat
     2641 gctcgctctc cgagtaaact cactgaatcc tctcgatatg attgcaccaa ttggaacgca
     2701 agtctcaatc ttcacaaaca ctctcacagt agtacagacc tctggattgg aatgggatat
     2761 cgatggagta ttggagccgg gttcacgggg tgtctcaaac ctcacaaaag aggcgaattt
     2821 tacgatagaa ggagaatcga ataccctagt tttcatcggg aataatcaac cttcaaacgg
     2881 aacccaagac gcctgagcac catcccacca atccatccgt ccatctggat gctggcgcca
     2941 tgtgatacct tgggggtcag tgtatgtcgg caactcatct gtagattcat ccaccggatc
     3001 aatctcggga ggtggtacaa gaagaccgtc ctcaagtgaa cccatggagt cacgagggcc
     3061 ccgacgcatt aggaggccaa cg
//
LOCUS       DUKB01000215            5081 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_75236, whole genome shotgun sequence.
ACCESSION   DUKB01000215 DUKB01000000
VERSION     DUKB01000215.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5081)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5081)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5081
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_75236"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /gene="pgk"
                     /locus_tag="HA345_07140"
     CDS             <1..774
                     /gene="pgk"
                     /locus_tag="HA345_07140"
                     /inference="COORDINATES: protein motif:HMM:NF012389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HIH85169.1"
                     /translation="LSGFARTLPCFAGNLMSAEIHALSKAIKDPPKPYVAILGGAKCD
                     DSLRIALNLLDQGVADTIVPVGVVGNLMLWAAGHRLGQGNEDFIRKTLGDDFDSTFQD
                     ATRCVEEYNDHLLLPVDLAIEIDNRRIAISLDELPASNPIYDIGISTLQSLHSVIRNA
                     GCILWNGPASYFEKEQFAFGTIEILNMICESKAFTIIGGGHTSALVSQRKMGHMVDHN
                     STGGGACLTMLAGDYMPVISSLELSSSLFESRLDELDMM"
     assembly_gap    801..1113
                     /estimated_length=313
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(1230..2648)
                     /locus_tag="HA345_07145"
     CDS             complement(1230..2648)
                     /locus_tag="HA345_07145"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012626.1,HMM:NF014877.1,HMM:NF014878.1,
                     HMM:NF014879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HIH85170.1"
                     /translation="MTWAVHCFKAYDIRGIAHSELDTSFAERLGHALATFLDCSALAV
                     GRDIRESSPDLHAAFVKGLTSIGVDVHDLGICTTGALYHATSSLKVDGGVMITASHNP
                     PEYNGFKMCRGTAAMAGAEIQDLRAVFESGNFRKSDAFGSHIILDDFTNQHLEAVVSA
                     TGDISRPVNAVIDSANAVPGPFMVALAEMLGSTGESIHCQWDNTFPNHPPDPTRPKNM
                     IDLAEAVVTSGAEFGVGVDGDGDRIGVVDEMGRFIHPDRLLAVFAEDILSNISEEAPE
                     EARTVIHDVKCSMALEHTIRHNGGIPHMMRTGHSFLKQAVREMPQCPLLGEMSGHFFF
                     HDRWNGFDDSLYGFARLVELVSRRLPNGEPFSSLFDNVPDFPSTGEAKVPLTGERFTT
                     MAAVKEAFADLESNQADGVRVRYDGHLGIKAGWFLCRPSNTEPILVMRAEADSEEGLA
                     AIREDVTHRIGDLIDLTIFHSS"
     gene            complement(2645..2872)
                     /locus_tag="HA345_07150"
     CDS             complement(2645..2872)
                     /locus_tag="HA345_07150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85171.1"
                     /translation="MPGSPYIDEVEGILDWRHVLSTICIVTLSLTIFGWYLGEGIGAI
                     GGGMVSLTFLWFLGWLIRGKPLRPSPYHHDV"
     gene            complement(2875..3249)
                     /locus_tag="HA345_07155"
     CDS             complement(2875..3249)
                     /locus_tag="HA345_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018108286.1"
                     /note="has endoribonuclease activity on mRNA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reactive intermediate/imine deaminase"
                     /protein_id="HIH85172.1"
                     /translation="MVKERIDTGGKVFGPYSPGVKANGIIWLAGQIAPEAGGIREQTQ
                     ASLDKIDALLAAAGVTKHEITFAQVLLDDINDFADMNEIYGSWIDGVEVPPARAAFEA
                     GALPGGAAVEIVIQAYDDKCCA"
     gene            3329..4483
                     /locus_tag="HA345_07160"
     CDS             3329..4483
                     /locus_tag="HA345_07160"
                     /inference="COORDINATES: protein motif:HMM:NF013799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85173.1"
                     /translation="MVFDPRSMRPLWATFVVGLILLSGSPTSLASPIEEFSQDSSYDP
                     LDELLQTIENAAAPRVMVIGIDGVRSDVAQISASREDSGFARMVSEGAWTYDSKVGPI
                     SISGPSWSSMLTGVWCDRHGVMGNSFDNHKLDQHLDLIDRVERHNSSLKTASLVYWAP
                     ISELIIGPEIADIQERYEEDADVHDRAVEILREDLDLDLLFVGYDDPDYAGHVHGFSP
                     DVSQYVDAVKLADDRFAELLDILDERISRGEDWLVIVTSDHGGGGSTLRGHSASSSEV
                     DLTTFMMVRGGDTVAGEMYGSVVVDVAVTALTHLEVPLPNGENTLDGRPLAFQPDSDA
                     SRVPNCSAPLVEVTFSYIVPIVQVGIILVLAVASFIFFKRRKSTFMDEEE"
     gene            4663..>5081
                     /locus_tag="HA345_07165"
     CDS             4663..>5081
                     /locus_tag="HA345_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85174.1"
                     /translation="MFRAREGRLPHRPHLWVDRPVGEGIGRFRRLILARRRLQAVRSF
                     LRKHPLVNRVVVKGASLEILAGKKEKCMERIYISDTESNHIAHRIALRGATNILLPES
                     WRESDATQIVTDYRVKRYPGILPDIYIDTEQGISMRN"
BASE COUNT         1168 a         1145 c         1151 g         1304 t
ORIGIN      
        1 ctctctggtt ttgcacgtac tcttccttgc tttgctggca acctgatgtc ggctgagatt
       61 catgcactat cgaaggcaat caaggatcca cctaagccat atgttgctat cctcggtggc
      121 gcaaagtgtg atgattcgtt gagaatcgcg ctcaatctcc tcgaccaagg tgttgcggat
      181 acgattgtac cggttggtgt cgtaggtaac ctgatgcttt gggctgcagg acatcgactc
      241 ggtcaaggca atgaggactt cattcggaaa actctcggcg atgatttcga ttcaacgttc
      301 caagatgcga cacgatgtgt cgaggagtac aacgaccatc ttcttcttcc ggtagattta
      361 gccattgaga ttgacaatcg ccgaatcgca atctctcttg atgaattacc ggcctcaaat
      421 ccaatttatg acattggtat ttcgaccctc caatccctcc attcggtgat tcgtaacgcg
      481 ggatgcatct tatggaatgg tcctgcatct tactttgaga aggagcagtt tgcctttggt
      541 actattgaga tattgaacat gatttgtgaa tctaaggcat tcactatcat tggtggtggc
      601 catactagcg cgctcgtatc tcagagaaag atgggtcata tggtcgatca taatagcaca
      661 ggtggggggg cttgtctgac tatgcttgca ggcgactata tgcctgtaat ctcttcccta
      721 gagctctctt cctccttgtt tgagtctcga cttgacgaac ttgatatgat gtaaattgga
      781 gccactgggg agatttgaac nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      841 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
      961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnccactgg ggagatttga actcccggcc
     1141 tcctgattac gaatcaggtg ctctaccagc taagctacag tggcggcgtc gcatggactg
     1201 acccccttcg gttaagcgaa tcggtccctt caagaagagt ggaagatcgt caaatcaatc
     1261 aggtccccga ttcgatgtgt aacgtcttca cggattgctg caagcccttc ttcactatct
     1321 gcttcagcac gcatcaccag aattggttct gtgtttgagg gcctacacag gaaccaaccc
     1381 gccttaatcc caaggtgtcc gtcgtagcgg acacggacac cgtctgcttg attcgattct
     1441 aaatcagcga atgcctcctt tactgctgcc atcgttgtaa atctctctcc agttaatggc
     1501 acctttgctt ctccagtgga aggaaagtcc gggacattat cgaagagaga tgagaaaggt
     1561 tcaccatttg gaagacgccg agaaactagt tcgacgagcc gagcaaatcc atagagtgaa
     1621 tcatcgaacc cgttccaccg gtcatggaag aagaaatgac ctgacatctc tcctaatagg
     1681 gggcattgtg gcatttctcg cacggcctgc ttgaggaagg aatgcccggt tctcatcatg
     1741 tgtggaatcc caccgttgtg acgaattgtg tgttccagtg ccatgctaca cttgacatcg
     1801 tggattaccg tgcgtgcctc ttcaggagct tcctctgaga tattgctcag aatatcttca
     1861 gcgaagacgg cgagcagccg atctggatgg atgaaccgtc ccatttcgtc gactacacca
     1921 atcctatctc catctccatc tactccaaca ccgaactctg caccactagt tacgacggct
     1981 tcggcgagat cgatcatgtt ttttggacgg gtaggatcgg gagggtggtt gggaaaggta
     2041 ttgtcccatt ggcagtggat tgattcccca gtcgagccaa gcatctcagc aagagccacc
     2101 atgaatggcc caggtacagc atttgctgaa tcgatgacag cattgactgg acgtgagata
     2161 tctcctgttg cagatacaac tgcttccaga tgttgattgg tgaagtcgtc gagaattatg
     2221 tgacttccaa aggcatcgga tttacggaaa ttgccacttt cgaatacagc ccgtaaatct
     2281 tgaatctcgg ctccagccat cgcggctgtt cctctacaca ttttgaatcc attatactct
     2341 ggagggttgt gactcgcagt aatcatcacg ccaccgtcga ctttgaggct agaagttgca
     2401 tgatatagtg caccagtagt gcaaatccca agatcatgta catcaacacc aatcgatgtc
     2461 aggcctttga cgaaagcagc atgtaaatca ggagaagatt cccgtatatc tcgtccaaca
     2521 gcgagagccg aacaatcgag aaacgtcgct aatgcgtgcc ccaatctttc cgcaaaggac
     2581 gtatcaagtt ccgagtgtgc tatgccccga atatcgtagg ctttgaagca gtgcaccgcc
     2641 cacgtcatac atcgtgatgg tagggtgatg gtcgtagtgg tttccctcta atgagccacc
     2701 cgaggaacca gagaaaggtc aacgaaacca ttcctccacc gattgctcca attccttcac
     2761 ccaagtacca gccgaatatt gtcaatgaaa gagtaacaat gcagatggta gataggacat
     2821 gtcgccagtc aaggattcct tctacctcat cgatgtaggg tgaacctggc ataattacgc
     2881 acagcacttg tcatcatacg cctgaatgac aatttcaacg gcagctccac ccggcagagc
     2941 gccagcctcg aaggcagctc gtgctggagg aacttctaca ccatcaatcc aagacccgta
     3001 tatctcgttc atgtcagcaa agtcgttgat gtcatctagc agaacttgag cgaaggttat
     3061 ctcgtgcttg gtgacacctg cagcagctag cagagcatcg atcttgtcga ggcttgcttg
     3121 cgtctgttca cgaattccac ccgcttctgg agcaatctgt ccagccaacc agatgattcc
     3181 attcgccttc acaccggggc tgtatggccc gaagaccttg ccacctgtat cgattcgttc
     3241 tttcaccatg atacatcaca tatcttggtg gctcatcaac gctccttcca ttcattctcc
     3301 agtcaatgaa tatcaaaata catatttcat ggtctttgac ccaaggtcaa tgaggccact
     3361 atgggctact tttgtggtcg gactaatcct gctttctggc tcacctacgt cactagcttc
     3421 tcccatcgag gagttttcac aggattcttc ttacgaccca cttgatgaat tgcttcagac
     3481 aattgaaaat gccgcagcac caagggtaat ggtcattgga atagatgggg tgagatctga
     3541 cgtagctcag atttcggctt caagagaaga cagtggtttc gctcgtatgg tatctgaagg
     3601 cgcgtggact tacgattcca aggtaggtcc aatttcgatt tccggaccat catggtcgag
     3661 tatgctgact ggagtatggt gcgatcgtca tggtgttatg ggtaacagtt ttgataacca
     3721 taaattggat caacatctcg atttaatcga tcgggttgag cgtcataatt cctcattgaa
     3781 aaccgcgagc ctcgtttact gggcccctat ttctgaattg ataatcggac ctgaaattgc
     3841 agatatccaa gagcggtatg aggaggatgc tgatgttcat gatagagctg tagaaattct
     3901 cagagaagac cttgatcttg acctcctttt cgttggctat gatgatcccg attatgcagg
     3961 tcatgtccat ggattctctc cagatgtttc gcaatatgtt gatgcagtaa agctcgccga
     4021 tgatcgcttt gcagaattgc ttgatattct tgatgaacga atttctcgag gagaagattg
     4081 gcttgttatc gttacaagtg atcatggagg gggcgggtcg acacttaggg gccacagtgc
     4141 atcatcctca gaagttgatc taaccacgtt catgatggta cgtggcggag atacagttgc
     4201 tggtgagatg tatggttcgg ttgtggtgga tgttgcagtt actgcactga cccatctcga
     4261 agtacctctt ccaaacggtg agaatacttt ggacggacgc cctctcgcat tccaaccgga
     4321 ttcagatgcg tcccgagtcc caaattgctc tgccccattg gttgaagtca cgttcagtta
     4381 catcgttcct atagttcagg ttgggattat tttggtcctc gcagttgctt cgttcatctt
     4441 cttcaaacga agaaaatcaa cattcatgga tgaagaggaa taattccact tagtttccgt
     4501 tcgcttgatt cgggattgac ccttccgagg accgtgagta gccctaatcc aacatgttgg
     4561 gtgatagatc atccagcgca ttttcagttc tttgcgcctt tcatcagggg tggccacgag
     4621 gctgatatcc ttgttttatc ttctcggcct gaggtacaga caatgtttcg agctcgagag
     4681 gggcgtcttc cgcaccgtcc acatttgtgg gtagatcgac cagtaggcga gggcattgga
     4741 cgttttagac gcctaattct cgcgagaaga aggcttcaag cggttcgctc ctttcttcgt
     4801 aagcaccctt tggtaaatcg tgtagttgtc aaaggtgctt cactggaaat acttgcaggt
     4861 aagaaagaga agtgtatgga acggatctac atttccgata ctgaatcaaa tcatattgct
     4921 catcgtatcg ctttgcgtgg agcaacgaat attcttcttc cagaatcatg gcgtgagagc
     4981 gatgctacac agattgttac agattatcga gtgaagcgtt atccaggaat tcttcctgat
     5041 atctatatcg atacggaaca ggggatttcg atgaggaatc a
//
LOCUS       DUKB01000216            6185 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_93893, whole genome shotgun sequence.
ACCESSION   DUKB01000216 DUKB01000000
VERSION     DUKB01000216.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 6185)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 6185)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6185
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_93893"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            127..1656
                     /locus_tag="HA345_07170"
     CDS             127..1656
                     /locus_tag="HA345_07170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85175.1"
                     /translation="MEEDMSRPKAGSPEDMSIPILDRIMTRTGMDLRTFGRSETYKAL
                     AIGLVLFSIIAYAGLSVFGMSSSLFAQTGESIPIEELEFQTLNRTNIEDGLTNETGWF
                     QLSEHRGKVIVLDMMAHDCSNCHGVQARIEAEMDNWYSLSDQRELVVIAYGSYYSESI
                     EYLNKSGGEYTVPTYATGIGSETAATVNGTQQDPNRLFTPGGTGVIPVVMVIDTEGYI
                     IASESSSTPAQGWGAFDNAIETAMTGTVADMAELRSFGVQEVDTSMLGIVFLGAMLSI
                     LVYFSPCAFPVLPGFISYYLTLGAREDELIESGKLKGKMPGPVVIGVLSGLGMWTFFA
                     FIGIIAWIMGRSFATSGIIHDIAIFIAALLLILGFFMLTGGTSHLMSWVQKIVDRFST
                     TEMDDTFTPRRNMYLYGIGYAAASIDCTAAAVLPFIGYLATIESASAVPFGLGSLMAG
                     LLILMVAVVSLVGFGRQQAIGFLRRATGMIKLIGAWMMMMAGAGLLFYLTNTDVVASF
                     F"
     gene            1666..2352
                     /locus_tag="HA345_07175"
     CDS             1666..2352
                     /locus_tag="HA345_07175"
                     /inference="COORDINATES: protein motif:HMM:NF012695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HIH85176.1"
                     /translation="MANLPQLVILAGGMATRLGDIATTTPKALIDIEGKPILTRILDH
                     VSEQGVDRALILIGHLGDAFDGYEHHTVDITFHREPEPLGTGGAIWNARHLLEAEFLM
                     MWGDDLHTIDLEPLLTTHSTERCLLTMTVTEAHNDVNLEHRNGRVIRYDKSGKNRDGL
                     NGYEAGTSLVDRRIVMEYGREGRWSWEEVVYPQLSGLIAAHHDDTQFHDMGTPERLER
                     LRSLFRMGTT"
     gene            complement(2326..3162)
                     /locus_tag="HA345_07180"
     CDS             complement(2326..3162)
                     /locus_tag="HA345_07180"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012509.1,HMM:NF020133.1,HMM:NF021988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85177.1"
                     /translation="MVARTVIVPSRVNILGEHTDRGGGLALPFATQPFLRLIVDPEDG
                     SGSSGDETVSALWKEAGGKSADIRVNSGIPIGAGMSSSAALCTAVAMAVNPNLDAMDL
                     AKEAQRLEHRVLGTKCGLLDQIAITHASAGFMMLIDFQNLDVAQIRFPDGWRLRLVDT
                     GVRRNLSETTYSGIQSNSEAMHLHVEEENARVRSAIGADAITLGCLLNESHASLRDHV
                     LVSTPEIEEKISAVRSTPGVLGARLMGGGFGGMLLAVVESDDVLPEALCPVPSGRAHS
                     EK"
     gene            complement(3257..4234)
                     /locus_tag="HA345_07185"
     CDS             complement(3257..4234)
                     /locus_tag="HA345_07185"
                     /inference="COORDINATES: protein motif:HMM:NF014010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HIH85178.1"
                     /translation="MSLPKRWVVEHGLVAKDHVRVEWRPSGNLRIIPETSSITRRREV
                     EIDLDTLPSNLAIDHLIAAYLSGAAIIRVRRIQGFSSSDRKLLRRFISIGRGIEIVNE
                     NDKMIEIESLVDLGSLSIYSSLNRMYLLVRTVLKDVMNAFETGDDSNLDDIEERENEV
                     DALRLLIERHIGGVLESASLEDSAGLNRWEAAELGNLVRTMERMGDHVNQLGHLASNI
                     ERAQKIDCNVLPFTIVPSWLKLFKALNSNIKRPNLKEIHEAKDELRKNLAILSQYEES
                     LWESSETSDALFLHRCSESIRRLCAYASDMAEILLNIIIHKNASMVVVE"
     gene            4441..5580
                     /gene="gcvT"
                     /locus_tag="HA345_07190"
     CDS             4441..5580
                     /gene="gcvT"
                     /locus_tag="HA345_07190"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HIH85179.1"
                     /translation="MHSARRTALFPSHQRHGGNIVDFHGWELPIWYTSMLEEHHATRN
                     AAGLFDVSHMGSFRFRGAGVLDWLDSIGTQKASKFGPGRCAYTHFLDKNGNVIDDMIF
                     AIVNENEVLGVPNASMIPVMLEWLSRHLPSDGSIQIDDLSEDTSILALQGPKSPQICE
                     AVLGSMNVVNHFRWREISENELGISGWIQGTGYTGERGFEIFVPNNQAETLWEAILST
                     GANEGVVPVGLGARDTLRMEKGFLLSGQDFHWEGLDEAAPDGFPDGFLSRTTLETNVP
                     FGLDLEHDFIGRDAMIIRADNGPRWHALKVVEKGPFPRNGTPVHLHVDDAPIGWITSG
                     GPSPTLGRVGIAMAYLKGVKIGDIVHIAPNPRRMLKAEIVRAPFV"
     gene            5631..>6185
                     /locus_tag="HA345_07195"
     CDS             5631..>6185
                     /locus_tag="HA345_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HIH85180.1"
                     /translation="MSSQWDQQVDSLAESIYKMVESGNGDIGELRETAHQTIDKVAGI
                     LPEAARVALHHRLDSKLDELIGLTAAAASNVVQDLGDAEVIERMIQTLRGMDPEMLDR
                     MYTFIDKDSSGGITIDEFNAFVSSAAPGGMNVTPEQAYATFRALDVDGNGILTKAALL
                     GIEHTMGNHEQEKMRLAEEEQQRRA"
BASE COUNT         1690 a         1546 c         1465 g         1484 t
ORIGIN      
        1 acgtcataac ccctagacca cgagtcctag taatcaggcc gacctagcta ttctgcttga
       61 aggtgacggg agtaatatgc tcttgccgcg gtggcattca tagacgaata ccatcacaga
      121 tgatgcatgg aggaggatat gtcgaggcca aaggctggtt ctccggagga catgagcatt
      181 ccgattctcg accgaatcat gactcggacg ggcatggacc tccgaacctt cggacggtct
      241 gagacctaca aggccctcgc catcggactt gtcctgttct cgatcatagc atatgctggc
      301 ctctctgttt tcgggatgtc gtcgagttta ttcgctcaaa caggagagtc aataccgata
      361 gaggaactag aattccagac cttgaatcgg actaatattg aagacggctt gacaaatgag
      421 accggatggt tccaacttag tgaacatcgt ggcaaggtaa tcgttctcga catgatggcg
      481 catgactgtt ccaactgtca cggcgtacaa gcacgcatcg aagcagaaat ggacaattgg
      541 tattcgttaa gcgaccagcg agaacttgta gtcatagcct atgggtcata ctattctgag
      601 agtatcgagt acctcaacaa atctggggga gaatacactg tcccaacata tgcgactgga
      661 attgggagtg aaaccgccgc tactgtgaac gggacacaac aggacccgaa tcgactcttt
      721 acaccaggag gtactggtgt catccccgta gtaatggtca tcgacacaga agggtacatc
      781 attgcaagcg agtcatcgtc gacgccggct caaggctggg gtgccttcga caacgcgatt
      841 gaaactgcga tgacaggtac cgtcgctgac atggcagaac tccgttcttt cggcgtacag
      901 gaggtagaca cttcgatgct cggtatcgtc ttcctcggcg cgatgctttc gattctcgtt
      961 tacttctcgc cgtgcgcgtt cccagttctc ccaggcttca tctcatacta cctcacgctt
     1021 ggtgcaagag aagacgaatt aatcgagtca gggaagctga agggaaagat gccaggacca
     1081 gtggttattg gcgtcctttc gggactagga atgtggacat tctttgcatt tataggcatc
     1141 atagcatgga tcatggggcg aagtttcgcg acttcaggaa tcatccatga catcgcgatt
     1201 ttcattgccg ccctcctact cattctcgga ttcttcatgc tcactggcgg aaccagccac
     1261 ctgatgtctt gggtacagaa aatcgtggat cggttctcta ccacagagat ggacgataca
     1321 ttcacgccac gccgcaacat gtacctttac ggaataggat acgcggcagc cagcatcgat
     1381 tgtaccgctg ccgcagtgtt accattcatc ggctacctgg caacaataga atccgccagc
     1441 gcagtaccat tcggccttgg atcgctcatg gctggtctac taatcctaat ggtcgctgtc
     1501 gtttccctcg tgggctttgg acggcagcag gcgattggtt tcctacggcg cgcaacagga
     1561 atgatcaaac tcatcggcgc atggatgatg atgatggcag gtgcagggct gttgttctac
     1621 ctcacaaata ccgatgtcgt agccagtttc ttctgagggc tccgcatggc aaatctgcct
     1681 caattggtca ttctcgcagg gggtatggct acacgtctag gagacatagc aacaacgacc
     1741 ccaaaggcat tgattgacat cgagggtaaa cccatcctaa cccgaattct ggatcatgtg
     1801 tcagaacaag gcgtagaccg tgccctcatc ctaattgggc atctaggaga tgcattcgac
     1861 ggttacgaac accatacagt ggacatcaca ttccacagag aacccgaacc tctcggcact
     1921 ggtggagcaa tttggaatgc gcgtcaccta ctagaggcag aattcctcat gatgtgggga
     1981 gatgatctcc ataccattga ccttgaaccc cttctcacaa ctcactcaac ggaacgatgc
     2041 ctattgacga tgacagtaac ggaggcgcac aatgacgtca atctagaaca tcgtaatgga
     2101 cgagttattc gatatgataa atcaggaaaa aaccgagatg gactcaacgg gtatgaagca
     2161 ggtactagct tagtagaccg gcgcattgta atggagtatg ggcgagaagg acgctggagt
     2221 tgggaggaag ttgtctaccc ccaactatct ggactaatcg cagcacatca cgacgataca
     2281 caattccacg acatgggtac tcctgaacgc ttggaacgtc ttcgctcact tttcagaatg
     2341 ggcacgacct gacggaactg gacacaaggc ctcaggaagt acatcgtcac tttccaccac
     2401 tgcgagtagc attccaccaa aaccccctcc catcaatcgg gcaccaagaa cccccggagt
     2461 ggaacgaact gcggagattt tttcttcaat ttccggagta ctgaccaaga catgatctct
     2521 cagtgaagca tggctttcat tgagaagaca tccaagcgta attgcatcag caccgattgc
     2581 agaacgtacc cgggcattct cttcctcaac atggaggtgc atcgcctcag aattagattg
     2641 aatgccagaa tatgtcgtct ccgataaatt tcgcctaacc cctgtatcaa caagtctcaa
     2701 cctccaacca tcggggaaac gaatctgtgc gacgtctaaa ttctgaaaat caatgagcat
     2761 catgaatcca gcactagcat gtgtaatcgc aatttgatca agtagcccac acttagttcc
     2821 aagaacacga tgctcgagtc gctgagcttc cttggccaaa tccatagcat ccagattggg
     2881 gttcaccgcc attgctactg ctgtacacag ggcagcagac gatgacatgc ctgcgccaat
     2941 aggaattcca ctattcactc taatatccgc cgattttcct cctgcctcct tccaaagtgc
     3001 actaaccgtt tcgtcaccac ttgatccact gccatcttcg ggatctacga tcaagcgaag
     3061 aaatggctga gtggcaaacg gaagagccag acccccccct cgatccgtgt gctcaccgag
     3121 gatattaacg cgagatggaa cgattactgt acgcgccacc atgatgatgc cagcccttca
     3181 cacgtcatgg gatttttcgt tgacttcggc tcaaaatgtg gtgcaaatat atgcaatcaa
     3241 gtaatgtaaa tatggattat tcgacaacaa ccatactcgc gttcttgtgt atgattatat
     3301 tcagtagaat ttcagccatg tcactcgcat atgcacaaag tctacggata gattctgaac
     3361 aacgatggag gaatagtgca tcagaggttt ccgagctttc ccagagtgac tcctcgtatt
     3421 gcgaaagtat agccaaattc tttcggagtt catctttagc ctcatgaatc tctttgagat
     3481 tagggcgttt aatgttggaa ttgagtgcct taaacaactt tagccacgaa ggtacgattg
     3541 tgaagggtag aacattacaa tcgatttttt gtgcacgttc aatattgcta gcaagatgac
     3601 ctaattgatt cacgtgatcc cccatacgtt ccatcgtcct taccaaatta ccaagttcgg
     3661 ccgcctccca acgattcaaa cctgcagagt cctccaaact cgcactctct agaacacctc
     3721 caatatgtcg ctcaatcagt aaacgtaacg catcgacctc gttttctctt tcctcgatat
     3781 catcaagatt agagtcatcg ccggtttcaa aggcattcat gacatctttg agtaccgttc
     3841 gaacgagaag atacatccga ttcaaagagg aatagattga cagagacccg agatccacaa
     3901 gggattcaat ttcaatcatc ttgtcgttct cattcactat ctcgatacct ctgcctatcg
     3961 aaataaaacg gcggagaagt ttacggtcag aggaactgaa tccttgtatc ctccgaaccc
     4021 tgattattgc tgctccagaa agataagcag caatcagatg atcaattgct agatttgatg
     4081 gaagcgtgtc caaatcaatt tcgacctctc ttcgtcgagt gatagatgag gtttcaggaa
     4141 tgatgcgaag attgccagag gggcgccact caacacggac atgatcctta gcgactaatc
     4201 catgctcaac aacccagcgc ttgggcaagg acacaatgaa agtcgaacca cctgtcagtt
     4261 gcaaccttcg aatctctgat ttcttcggct caaacaatct catctattca aagaatgctc
     4321 gaacatttac ctatatactt tattggcgac tatgaatgac gttaatggta aaaatatata
     4381 caaaatatag gacatcgaag attgccaatt atcaaaaccc taactgccag aggatttgca
     4441 atgcactcgg ctaggagaac cgccctgttc ccgtcacacc agagacatgg agggaatatc
     4501 gttgattttc acggctggga gctaccaatc tggtacacct ccatgctaga agagcaccat
     4561 gcaactagga atgctgcagg tctctttgat gtgtcacaca tggggtcttt tcgatttagg
     4621 ggagcgggag ttctcgattg gctagacagt atcggaaccc agaaagcttc gaaatttggg
     4681 ccagggcgct gcgcttacac ccatttcctt gacaaaaacg gcaatgtgat tgatgacatg
     4741 atttttgcca tcgtaaatga aaacgaagta ctcggcgtcc caaacgcatc catgatccct
     4801 gttatgcttg aatggctcag tcgccacctc ccctcggatg gcagtatcca gattgatgac
     4861 ctctctgaag atactagcat actcgcactg caaggtccaa aatcacccca aatctgtgaa
     4921 gctgtgcttg gaagcatgaa tgttgtcaac cacttccgat ggcgcgagat tagtgaaaat
     4981 gaactaggca tttcaggctg gattcagggc acagggtaca ctggtgaacg tggattcgag
     5041 atttttgttc caaataacca agcagagacg ctctgggaag cgatcctgtc aaccggcgcc
     5101 aatgagggcg tagtcccagt aggcctaggc gctagagaca cattacggat ggagaaagga
     5161 ttcctactct ctggccagga cttccattgg gagggtctcg atgaagccgc tccagatgga
     5221 ttcccggatg gattcctatc aaggaccaca ctagagacaa atgtcccatt tggattggat
     5281 cttgaacacg atttcatcgg ccgtgatgca atgattattc gtgcagataa tgggccgcga
     5341 tggcacgcat tgaaagtcgt tgaaaagggg ccatttccac ggaatgggac gccagtccat
     5401 cttcacgtag atgatgcacc aatcggatgg attaccagcg gaggccccag ccctacatta
     5461 ggcagagtag gaatagccat ggcatacttg aaaggagtca aaattggaga catcgtccat
     5521 attgcaccga atcctcgacg gatgttgaaa gcagagattg ttcgtgcccc attcgtctaa
     5581 aacacattat cctgcactta attcatattc cagtcagata tcctatggct atgtcctccc
     5641 aatgggacca gcaagttgac tcccttgcag aatcgattta caagatggtt gaatccggca
     5701 acggagatat cggagaactt cgagaaactg cacatcagac aatcgacaaa gtcgctggaa
     5761 ttcttccaga ggccgctcga gtcgccctcc accatcggct cgatagcaaa ctcgacgaat
     5821 tgattggatt gactgcggct gccgcgagta acgtagttca ggacttagga gacgccgagg
     5881 tgattgaacg tatgattcag accctccgtg gtatggaccc agaaatgctc gacaggatgt
     5941 ataccttcat cgacaaggac tctagtggag gaatcacaat tgatgagttc aacgcatttg
     6001 tttccagcgc agcaccgggt gggatgaatg tgacacctga acaagcatac gccacattcc
     6061 gtgccctcga tgtcgatggg aatggaatcc tcacaaaggc cgcactacta ggtatagaac
     6121 atacaatggg taatcacgaa caggaaaaaa tgagattggc ggaagaagaa cagcagcgta
     6181 gagcg
//
LOCUS       DUKB01000217            5515 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_110708, whole genome shotgun sequence.
ACCESSION   DUKB01000217 DUKB01000000
VERSION     DUKB01000217.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5515)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5515)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5515
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_110708"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            27..692
                     /locus_tag="HA345_07200"
     CDS             27..692
                     /locus_tag="HA345_07200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85181.1"
                     /translation="MVNITAGSSSPMLSSLSHNPQIIRADEATDIIITVVLDDPDRTT
                     GQVQARIAKDGIGSTIQLNDNGSGVDEVADDGIWSGSVLWTPNGGGYARLEAWATDGD
                     TVSPTIAVTINVEGAVDSGGILEELRGDITTVIGGVIIVVILLGGLIMFNRRRSLARD
                     LELIESWGGAPAGAKAGWDATTEVSAADAAMSPMNMDAADNAPMEEDDGKIRGGDLDW
                     DNV"
     gene            complement(693..1421)
                     /locus_tag="HA345_07205"
     CDS             complement(693..1421)
                     /locus_tag="HA345_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008081932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HIH85182.1"
                     /translation="MGETLPVHVTVVIPTRNEEAAIVDTIRSVPNDGWCEKLDFLIID
                     GNSTDRTRELAESEGATVYLEERRGYGRAYRTGFAMASGDIIVTMDADCTYPGEEVPD
                     LVRKLIEDDLEWITCDRLRRAEKGSMSGLHGLGNWVLSTTARALYWYGIHDSQSGMWV
                     FRKKILEDERIRPTNDGMPLSEEFKIRARRYLGRKKAIEISVPYRERVGDAEINTWGD
                     GWKNLRFLFSMRLGLARSKTEWGP"
     gene            1531..>3162
                     /locus_tag="HA345_07210"
     CDS             1531..>3162
                     /locus_tag="HA345_07210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85183.1"
                     /translation="MMEHLIADRSAGGELSQPSHNRSILRRFLASALLLCLLVSLLPT
                     AIADDDWSTANVLTDGSSSSDAVDHDGDSTDWWTIDILNGDRLEVDVTSPTGDYGFDL
                     FGCFGTDHWEGKVQIWDSQDVNGVMERDQKHFDQDFSSSGSASISALVNPSSSDWGSH
                     TGPTTWYIMVKSLSTCARDDFDYTISPSVDTTNRDTDEDGFVNSEDDCDDVPGTSTED
                     RKGCPDGDSDGWSDTGDRFPIDGTQWSDGDGDGYGDNPAPATMPDHCPQYFGNSDQDR
                     YGCRDSDADGWSDPDPTAIFSTESWNVSDGADAFEFDSTQWSDYDLDGYGDNWDNFDW
                     NASRAEAGVGVFYEGATEPDACPLRWGSSMEDRIGCPDSDVDGWSDPDTDWGVENGSD
                     AFPTDDTQWADRDLDGFGDNPDGDSPDAFPDNPSQWGDSDGDGWGDNQGPGATQVDYF
                     PSEPSQWADMDSDGYGDNSSGLNPDGCKDRAGTSTMDRYGCPDADGDGYSNSDADWPA
                     HPSGFADAFNDQASQWADTDGDGYGDRPVMPNGDFF"
     assembly_gap    3163..3429
                     /estimated_length=267
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <3430..4297
                     /locus_tag="HA345_07215"
     CDS             <3430..4297
                     /locus_tag="HA345_07215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85184.1"
                     /translation="WADTDGDGYGDNQSESAWRPDACKVTVGTSTIDRWGCPDSDGDG
                     ASDPQVDSGWLSHPAGLADAFPDDYTQWRDFDGDGYGDEPVGTNPDRCRETPGTSQDD
                     RYGCPDTDGDGWSDLGDRFPNDVTQWEDTDGDGYGDNPNGNMPDSCPTAALSEGISLL
                     DRLGCPDTDGDGYSDPDDEWGASPNGTADAFPRIRVQWADMDGDGFGDNAIGSLRDDC
                     PETSGSSTIDLQGCPDGDGDGYSDEFGFTNAQFMLMASNPTASLFTYLIPFTMFALTL
                     FGMMLGRRRGDL"
     gene            4297..>5515
                     /locus_tag="HA345_07220"
     CDS             4297..>5515
                     /locus_tag="HA345_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85185.1"
                     /translation="MRRVLIAFVLSALLLPLSASMAMAESGVMLSESRVDPMDLDNDG
                     NIDMLRVIYAVNTSTQSNAGVQVVVETGRLVLPFWNNLTLTSGETQFGSIDIQAWEMA
                     SYTLHLRVWDHDMEVIVYEEDLGTYDLTAALDPPSLALDFQGRSEVYTGEACSILRTF
                     SDEVGAHYGEMGVVSLTGIPWQVLNDTAPIDCSGWPAGQYTVSLQYTNGLGFGASTSL
                     DVTILNHPAPTFDLVVTGDNQRMGTGCAVEAVIDENSTTSMLTYGWTVIDPRGQQTET
                     SDINDIDCGLWIPGVHKIRVVASNAQMQSTTMGVNLVRLPPSDANDPTLGNITDDGTW
                     PDASIGGEYEPVPLFMNVQASAGAIAGGGVLIGILLGAFVGLLMRRGPRDSMGSLEDG
                     LLVPPPEIDPVDES"
BASE COUNT         1193 a         1232 c         1455 g         1368 t
ORIGIN      
        1 attcacttgg aagtatcagc atagatatgg tcaacatcac agctggttcg agttcaccaa
       61 tgctgagttc gctttctcat aatccacaaa ttatccgtgc tgacgaggcc actgatatca
      121 taatcacagt cgtgctagat gatccagacc gaacaaccgg gcaagttcag gcaaggattg
      181 ctaaggatgg aattggttcg acaatccaac tcaatgacaa tggttctgga gtagacgagg
      241 tagcagacga tggtatctgg tccgggtcag ttctatggac gccgaatggt ggaggatatg
      301 cgcgtcttga ggcgtgggcg acagatgggg atacagtatc tcccacaatc gccgttacaa
      361 tcaatgtaga gggggccgtc gattctggcg gaattcttga ggaacttcgt ggcgatataa
      421 ccacagttat tggaggagtg ataattgtag taatccttct tggtgggttg attatgttca
      481 atcgtcggcg atcacttgct cgtgatcttg aactgattga atcatggggg ggtgctcccg
      541 caggtgccaa ggccggatgg gacgccacaa ctgaagtcag tgcagcggat gcggcgatgt
      601 ctccgatgaa tatggatgca gccgataatg ctccaatgga ggaggatgac ggcaagattc
      661 gtggcggaga cctagattgg gataatgtct gatcatggtc cccattcggt cttcgatcga
      721 gcaagaccga gtcgcataga gaaaaggaat ctgagattct tccatccgtc gccccatgtg
      781 ttgatctcag catcgccgac acgttctcgg taagggacgc taatctcaat cgctttctta
      841 cgcccaaggt agcggcgggc gcgaatcttg aattcctcag atagaggcat cccgtcgttt
      901 gtaggccgga ttctttcatc ttcaagaatt ttctttctga atacccacat gccactctgt
      961 gaatcatgga ttccatacca gtagagagct ctcgcagtgg tagagaggac ccaatttcct
     1021 aaaccatgaa gtccagacat agatcccttt tctgcgcgtc ttaggcgatc gcaggtaatc
     1081 cattcaaggt catcctcgat gagtttccgc accaggtctg ggacttcttc tccaggatag
     1141 gtacagtccg catccattgt gacgattatg tctccggatg ccatagcgaa acctgttctg
     1201 taggctcgac cgtatcctct tcgttcctca agatagaccg tagctccttc actctcggca
     1261 agctcgcgag ttcggtctgt ggaattgccg tcgattatca aaaagtcaag cttctcacac
     1321 catccgtcgt tgggtacgga gcgaatcgtg tcgacgatgg ctgcttcttc gtttcgggtc
     1381 ggaattacga ccgtgacatg aactggtagc gtttcaccca tgaatcgcgg gttcagtgct
     1441 ttgatttgaa tgcattccat ctctaaatca tctcaaaatc attagttaat ctcgcacaca
     1501 actgatttac acggggacgc gagtgaggtc atgatggagc acctcatcgc ggaccgttcc
     1561 gccggcggcg agttaagtca gccttctcat aaccgctcca tcttgcgacg tttcctagcg
     1621 tctgcgttac tcctctgtct tctggtttct ttgcttccaa cagccattgc tgatgatgat
     1681 tggagtacag caaatgttct cactgatgga agtagctcct cggacgccgt agatcatgat
     1741 ggggattcaa ctgattggtg gacgattgac attctgaacg gcgaccgtct tgaggttgac
     1801 gtgacatcgc caacaggaga ttatggcttc gatctcttcg gatgctttgg gactgatcat
     1861 tgggagggta aggtgcaaat ctgggattct caagatgtca atggtgtaat ggaacgcgat
     1921 cagaagcact tcgatcagga cttctcaagc agtggttctg caagtatctc tgctctagtg
     1981 aacccctcct cttccgattg gggttcccat acaggcccca caacctggta catcatggtg
     2041 aagtcccttt ctacatgcgc acgtgacgat tttgattaca caatcagtcc ctcggttgac
     2101 accaccaatc gggatacaga cgaggacggt tttgttaact cagaggatga ttgtgacgat
     2161 gtcccaggaa catcgaccga ggatcgtaag gggtgtcctg atggcgattc tgatggatgg
     2221 tccgatacag gtgatcgatt ccctatagat ggcacgcagt ggagtgacgg agatggtgat
     2281 ggatacggtg acaatccggc gccagcaact atgcccgacc attgtccgca atacttcggt
     2341 aattcagatc aggaccgata tggctgccgt gattccgatg cagacggttg gtcagatcca
     2401 gaccctactg caatcttctc gactgagtca tggaacgtct ccgatggcgc tgatgccttc
     2461 gagtttgact ccactcagtg gtcggattat gacctcgatg gttatggtga taattgggat
     2521 aatttcgatt ggaatgccag tagggcggag gcaggtgtag gggtattcta cgagggtgct
     2581 actgagcccg atgcttgtcc actaaggtgg ggtagctcaa tggaggatcg catcggctgt
     2641 ccagattcgg atgtcgatgg ttggtctgat cctgatacag attggggagt ggagaatggt
     2701 tccgatgctt tcccgactga cgatactcag tgggcggacc gcgacttgga cggcttcggt
     2761 gacaatccag atggagattc tccggatgcc ttcccagaca acccttctca atggggtgac
     2821 agtgatggtg atggatgggg cgataatcag ggccctggag caactcaggt ggattacttc
     2881 ccatccgaac caagtcagtg ggctgacatg gattcagatg gttatggaga caattccagt
     2941 ggtctaaatc ctgatgggtg taaggatcgt gctgggacct caactatgga tcgttatggc
     3001 tgtccagatg ctgacggtga tggatacagt aattccgatg cggactggcc agcccaccca
     3061 agtggatttg ctgacgcctt caatgatcaa gccagtcaat gggctgatac tgatggagat
     3121 gggtacggag accgtcctgt aatgccaaat ggtgatttct tcnnnnnnnn nnnnnnnnnn
     3181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     3421 nnnnnnnnna tgggctgata ctgatggaga tggatacggt gacaatcaat ccgaatctgc
     3481 ctggaggccc gacgcttgca aggtgacggt tggaacatcg accattgacc gatggggctg
     3541 tccggactct gacggagatg gtgcgagtga tccacaggtt gattccggct ggctttccca
     3601 tcctgcgggt cttgcagatg ccttccccga cgattacacc cagtggcgag atttcgacgg
     3661 tgatggttac ggcgacgagc cagtcggtac taaccccgac cgttgcagag agacaccagg
     3721 tacgagtcag gatgatcgat atggatgtcc cgacacagac ggcgatggct ggagtgacct
     3781 aggcgatcgg ttcccgaatg atgtgacgca atgggaggac actgatggtg acggatacgg
     3841 cgacaatcct aacggaaaca tgccggactc atgcccaact gctgcgcttt ctgaaggcat
     3901 tagcttgcta gatcgacttg gttgccctga tacggacggt gatggctaca gtgacccaga
     3961 tgatgaatgg ggtgcgagcc ccaatgggac ggcggatgct ttccctagaa tccgggttca
     4021 atgggcagat atggatggcg atggatttgg ggataacgca atcggttcac tccgtgatga
     4081 ttgtccagaa acatcaggtt cctccaccat tgatttacag ggctgtccag atggcgatgg
     4141 tgacgggtat tccgatgagt ttggattcac caatgctcaa tttatgctga tggcttccaa
     4201 ccctacagct tctttgttca cttatcttat ccccttcacg atgtttgctt tgacactgtt
     4261 tggaatgatg cttggtcgtc gtcgaggtga tctctgatgc gtcgtgtcct gattgcgttc
     4321 gttcttagcg ctcttttact accactttcg gcgagtatgg ctatggcgga atcgggtgtt
     4381 atgctcagtg agagtcgagt ggacccaatg gacctagaca atgatggaaa tatcgacatg
     4441 ctccgtgtaa tttacgcagt caatacctct acgcaatcca atgcaggtgt tcaggtcgtt
     4501 gttgagactg gacggcttgt tctaccattt tggaacaacc taacacttac ctctggagag
     4561 acacagtttg gatcaatcga tattcaagcc tgggagatgg cgagttacac gctacatctt
     4621 cgagtgtggg atcatgatat ggaggtcatt gtttacgagg aagatcttgg aacttacgac
     4681 ttgacagctg cgttagatcc accttcactc gctctcgatt tccaagggcg atccgaagta
     4741 tacacgggcg aggcatgctc cattctacgg acattctctg atgaggttgg agcgcactat
     4801 ggtgagatgg gtgttgtctc cttgactggt attccatggc aggtgttgaa tgataccgct
     4861 ccaatcgatt gcagtggatg gccagcagga cagtacacgg tgtctctcca gtataccaac
     4921 ggccttggat tcggggcttc tacctctctc gatgtaacta ttctgaatca tcctgcacct
     4981 acattcgacc tcgtggttac tggtgacaat cagcggatgg gcacaggctg tgctgtggag
     5041 gcagtgattg atgagaactc aacaacatcg atgctcactt atggttggac tgtgattgat
     5101 ccaagaggcc agcagactga gacctcggat atcaacgaca ttgattgtgg cctttggatt
     5161 cctggtgtgc ataagattcg cgtagtcgcg tcgaatgccc agatgcagtc gactacgatg
     5221 ggcgttaatt tggtccgtct ccctccatca gatgctaatg atcctacgct tgggaacatt
     5281 acagatgatg ggacttggcc ggatgcgtcc attggaggcg agtatgaacc agttccattg
     5341 ttcatgaatg tgcaagcttc ggcaggagcc attgcagggg gcggtgttct cataggaatc
     5401 ctcctcggtg ctttcgttgg cctcctaatg cgtcggggcc ctcgtgactc catgggttca
     5461 cttgaggacg gtcttcttgt accacctccc gagattgatc cggtggatga atcta
//
LOCUS       DUKB01000218            9224 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_106122, whole genome shotgun sequence.
ACCESSION   DUKB01000218 DUKB01000000
VERSION     DUKB01000218.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9224)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9224)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9224
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_106122"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2871)
                     /locus_tag="HA345_07225"
     CDS             complement(<1..2871)
                     /locus_tag="HA345_07225"
                     /inference="COORDINATES: protein motif:HMM:NF015772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85186.1"
                     /translation="MANQTMSAIDEKRLSAEMERYHQALDEETERLYGVAAEARAKGL
                     DMSTEVEIPRAEDLADRTEKLLAEYLDGLEVAEDIREMLKVEEREITAIKIGQDVARR
                     MMERTGDQIKAIDAGLRTGLAILTEAILVAPLEGIGQVRLLSNTDGTTFLSIDFCGPI
                     RAAGGTAQAMAVLIGDMIRTELGIAKYNPTDPEVERVKEEFGLYRGGLQYRPTPEEID
                     VIVRACPVMINGESTEEQECAGYREVRNIDDGRVRGGVLLVIGEGLCLKAPKIQKHVE
                     RLEIPGWSFISDFANRGKDDGKSDEEKFVSRKIPIDKRFLKDIIAGRPVFGMPNRPGG
                     FRLRYGRPRASGLAAAGMNPASMRAMGEFLSVGTQMKIERPGKACAITPTDEIDGPSV
                     LLEDGTFRRIQTEEEWLQIESKVRAIWDNGELMLGFGEFLENNKKLVPASYTTDWWAS
                     ELLDSIKNQEDLEFVTKHLESEDLPNTEPPGVLRRRLRSKEHRLENEWALRDWHRFLR
                     KVSPSWEVAIACADRFGVAIHPNHNLCWSDIPIALLPHIHDSIGGAQVEGNSLRIPDA
                     AKGWTPPSVKIDSVANTDGSIRRERQLKRRVKEMDAADSSKGVWMIPDHPTGEWDGHL
                     SLSEHGIVKASLMALGIEHVHNGDDIVIENGWRGLLHGLGFESKKSGLTLRKGVQKTI
                     EKQIQQFIEAHSVVKKEEARTTALEDERRIARIAAETAARQRGEGIAATEAAGKRAEE
                     EIANSGPEDQKALNVAKQILDDNDVDGSLSIVREINDYRWEDAAPCRIGCRMGRPEKS
                     APREMKQRAHALYPIMNFGGPQRLLETAVSREGSIRVTVGPRRCLRCDKETPHVRCHH
                     RVISSEPKECGGRTTPAERRGSQMRNRQGELTTIPLADILEVKRIALGLDRLPTGIKA
                     MKGLTSRAQTPEPIEKGILRAAHDITAFKDGTVRYDMIDVPVT"
     gene            2969..3556
                     /gene="pyrE"
                     /locus_tag="HA345_07230"
     CDS             2969..3556
                     /gene="pyrE"
                     /locus_tag="HA345_07230"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HIH85187.1"
                     /translation="MATPTTPAEARALLIERVRNLAYLYQPEDPFTLASGRISPHFFD
                     MKPVMCDPECAHLLGVLTHDTLESIGDIDAVGGLELGAVPLTGIVIAKAPAGSGLRGF
                     IIRKEPKGRGGRKTGNPPGIEGSTLKAGDRCIILEDVTTTGGSALKACERLTEIGCKV
                     VGCITILDREEGGADAFRDADIPLYALLRLSDIRA"
     gene            3594..4154
                     /locus_tag="HA345_07235"
     CDS             3594..4154
                     /locus_tag="HA345_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011842892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HIH85188.1"
                     /translation="MAGTNVVMNTSAGDIKIELFTDTMPVTAGNFLALALDGYYDGLH
                     FHRVIQGFMLQGGCPHSADPNSPRAGTGGPKGGGTYTTTDGQSIVRDRGGNIPDELTQ
                     KFSNEVGTLSMANTGRPNSGGSQFFVNTQHNDFLDWFGRGASAHPVFGKVIEGMDVVK
                     AIETTPTGPGDRPQTPQKIESITLVI"
     gene            4350..6056
                     /locus_tag="HA345_07240"
     CDS             4350..6056
                     /locus_tag="HA345_07240"
                     /inference="COORDINATES: protein motif:HMM:NF024753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HIH85189.1"
                     /translation="MAFKLVAGATLEGSKVGLKPSLQASRISDSPARSGSMRKWIPWV
                     AILAVAVAVMLSLPTTVDPIVNRTVADVPLPPSPPCPPGSDCSDTHPCSAETMPSDEF
                     ETRWTAVGNNRMMSSPHATDLNGDSVLDIVVGTGAEESHSGSIIAVDGASGNLLWEAE
                     TDGEMFASAQFEDLNGDNVDDIALGGRDQQMFAVNGATGEILWSFDKASTLREAWYQF
                     YSGQFIDDINDDNVADWLVANGGDPMKEPDDERDNGYLMILSGADGLPLGVADLPDGR
                     ETYMSPLLYTPHPDMAIEVLYGTGGETWDGSLWSTSIDAIMQGDLSTSTQIVAPTPNV
                     KKGFMTPPAIADLTLDGIQDIVVSSFDGRLILVDGRNYTHTWTIDMHEVVENGTASGL
                     ESWASPTVGYFTPDSVPDVFVNYVIGVFPQYSSSYYALVDGATGDILWSETTEHTIFT
                     SPLSVDLDSNGRDDIVLVRGAEEWREEGSLSYNSASVLDTCSMNTISLYNRTNLSIGT
                     PLIADLDMDGDLEMVTTTTTGYLSETEGWTLTRMDLNASTPTRIGWGAYMGSQYDGLF
                     LD"
     gene            6131..7306
                     /locus_tag="HA345_07245"
     CDS             6131..7306
                     /locus_tag="HA345_07245"
                     /inference="COORDINATES: protein motif:HMM:NF013215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HIH85190.1"
                     /translation="MELSVDEALTLANLIRSDRTVPGITRSAKVPSEDASIDWTFKTA
                     GGKVLKDADRIAEINALTIPPAWTEVWVCPNNRGHIQATGVDGKGRLQYRYHPDWISM
                     KTRMKFAGIAGFAEVLPALRKKITRDLKRDSMDIEKVSALVVRLMDLYNIRVGSDEYA
                     RTNESYGLTTLRNGHMIRKTGDNAEGRHDAVFSFTGKSGKSWEILIEEDNIVDHLLET
                     RKLGSRGKDTDLFHFVNPETGNENDLKAEHINQYIQDATGESYTAKDFRTWAATWKCA
                     YRLAFIDNDTRGSVLEEFIDTLPANENLQNLVNKDERILLDSDTARNKAMLAVIDTVA
                     SNLGNTRAVCRSSYIHPLFLESFLDESLGKKWSKGQEGPRRTGLSDEESIALNVLRQ"
     gene            7352..>8374
                     /locus_tag="HA345_07250"
     CDS             7352..>8374
                     /locus_tag="HA345_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014561583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HIH85191.1"
                     /translation="MEERIERDTMGTLSVPSDRYWGAQTARSLMNFDIGEDAMPEGVI
                     RAFGILKMSAAETNKDLGTLDGDVADLIIAAASEVASGSLNDHFPLRVWQTGSGTQSN
                     MNANEVIANRAIEMAGGVLGSKDPVHPNDHVNKAQSSNDTFPTAMHISAAEAIMHSVI
                     PSVQSLRDSFQEKSEEWSDIVKIGRTHLMDAVPLTLGQEVGGWVAQIDASLSRIEASM
                     DDLYEIALGGTAVGTGLNTHPDFAVGVASKIAGHTGLPFRSAPNKFAQLAAHDAIVAT
                     SGALSVLAVSLMKIANDVRWLGSGPRSGLGELELPANEPGSSIMPGKVNPTQCEALTM
                     VCAQVMG"
     assembly_gap    8375..8682
                     /estimated_length=308
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <8683..9069
                     /gene="fumC"
                     /locus_tag="HA345_07255"
     CDS             <8683..9069
                     /gene="fumC"
                     /locus_tag="HA345_07255"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011556371.1"
                     /note="class II family (does not require metal);
                     tetrameric enzyme; fumarase C; reversibly converts
                     (S)-malate to fumarate and water; functions in the TCA
                     cycle; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HIH85192.1"
                     /translation="VCAQVMGNHTAVTVGGSQGNFELNVYKPMMIHNLLHSARILTDS
                     CHSFRERCIDGLQPNRENIREHLDNSLMLVTALNNHIGYDAAAKIAKNAHESGLTLKQ
                     SALELGLLTEAQFDEWVRPEDMTGPK"
BASE COUNT         2146 a         2202 c         2217 g         2351 t
ORIGIN      
        1 tgtaactgga acatcgatca tatcgtagcg gactgtaccg tccttgaatg cggtgatgtc
       61 gtgtgcggct cgtagaatcc ccttctcaat tggctcaggc gtctgagccc gagaagtcag
      121 ccccttcatc gccttgattc cggttggtag gcgatcgagc ccaagtgcga ttctctttac
      181 ttcaagaata tcggcgaggg ggattgttgt caactctcct tgacggttcc tcatttggga
      241 tccgcgtctc tcggcgggtg tagtcctacc accacattcc ttcggttctg aggatatgac
      301 tcgatggtga caacgtacgt gcggagtttc tttgtcacaa cgcaagcaac gtcgcggccc
      361 gacagtgacc cgaatgctac cttcacggga gacggcggtc tcaaggaggc gttgaggtcc
      421 accgaagttc atgattggat agagtgcgtg cgctctctgc ttcatctctc gcggcgctga
      481 tttttctggc cgccccatcc tacacccaat tcgacaaggc gcagcatcct cccatcggta
      541 gtcattgatt tctctgacga tagacaagga accgtcgaca tcattgtcat caagaatctg
      601 tttagcaaca ttgagcgcct tctgatcttc aggtcctgaa ttcgcgattt cttcttcggc
      661 cctttttcca gcagcctcag tcgcagcgat tccttctcca cgctgccggg ctgcggtttc
      721 tgctgcaatc cgtgcgattc ggcgttcatc ttcaagagcc gttgtacgtg cttcttcttt
      781 cttcacaacg gaatgcgctt cgatgaattg ttgaatctgt ttttcgattg ttttttgtac
      841 acctttccgg agtgttagac ccgatttctt cgattcaaat ccaagtccgt gtaataggcc
      901 tcgccatcca ttttcgatga caatgtcgtc cccattgtga acatgttcga ttccaagtgc
      961 cattagactg gccttcacga tgccgtgctc agacaaagag agatgcccgt cccattctcc
     1021 tgttggatga tctggaatca tccagacacc tttcgatgaa tctgctgcgt ccatctcttt
     1081 tactcgtctc ttcagttgtc tttctcgtcg aatggatccg tccgtgtttg ccacggaatc
     1141 aatcttcaca ctcggaggag tccatccttt ggcagcatct gggatccgga gtgaatttcc
     1201 ttcaacttgc gcaccgccta tactatcgtg aatatgtggg agtaaggcga ttggtatgtc
     1261 agaccaacat aggttatgat tgggatggat ggctactccg aatcgatcag cgcaggcaat
     1321 ggctacctcc caactaggac ttacttttct gaggaatcga tgccagtcgc gtagcgccca
     1381 ttcattttct aatcgatgtt ccttacttcg gagacgacgt cgtaggacac ctggtggctc
     1441 agtgttgggt aaatcctctg attcgagatg cttggttacg aattctagat cctcttgatt
     1501 ttttatcgaa tcaagtaact cacttgccca ccaatccgtg gtataggagg ctggaacgag
     1561 cttcttgtta ttctcaagga actctccaaa accaagcatt agttctccat tatcccagat
     1621 tgcacggact ttagattcta tttgcaacca ttcctcttca gtctgaattc gtcgaaaagt
     1681 tccatcttcg agtagaacag atggcccatc gatttcatct gttggcgtga tagcacaggc
     1741 cttccctgga cgttctattt tcatctgagt tccgacggag agaaattcac ccatggccct
     1801 catggaagca ggattcattc ctgcggcagc aagacctgaa gctcttggac ggccgtagcg
     1861 tagacggaat ccaccaggtc gatttggcat tccaaagacc ggacgtcctg caatgatatc
     1921 cttcaggaat cgcttatcga tgggtatttt ccttgatacg aacttctcct catcggattt
     1981 gccatcgtcc tttccacggt ttgcaaaatc actaatgaag gaccaaccag gaatctccaa
     2041 tcgctctacg tgcttctgaa tcttcggtgc tttgagacag agcccctcac caatcacgag
     2101 taatacacca cctcgtacac gcccgtcgtc gatattgcgc acttcgcgat atcccgcaca
     2161 ttcctgttcc tcggtagatt caccattaat catcacggga caagccctga caattacgtc
     2221 aatttcttcg ggtgttggcc tgtattgcaa acccccacga tagaggccaa attcctcttt
     2281 gacacgttct acttcggggt cagtcgggtt atacttcgct atgcctagct cagttcgaat
     2341 catgtctcca attaggactg ccatcgcttg tgcggtgcca ccagcagcgc gaattggacc
     2401 acagaaatca atggataaga aagtggtacc gtctgtattg ctgagtagtc tcacctgccc
     2461 aatcccttcc agaggtgcaa ccaagatcgc ttcagttaga atggcaagtc cagtcctcaa
     2521 tccggcatct atcgccttga tttgatcccc agtccgttcc atcattctac gagcaacatc
     2581 ttgcccaatt ttgattgccg tgatctctct ttcttctacc ttgagcatct cacgaatatc
     2641 ctcggcgacc tcgaggccat cgagatattc ggcgaggagc ttctccgtcc tatcggcgag
     2701 atcctctgca cgggggattt cgacttcagt agacatgtcg agtccttttg cacgtgcttc
     2761 ggcagcaacc ccgtagagtc gttccgtctc ctcatctagc gcctgatggt aacgttccat
     2821 ctcagcagag agacgctttt catcgatggc agacatcgtt tgattcgcca ttcgatgcca
     2881 cctcggaaac ggtactgaag aatgacgctc tttgaacaaa tcgctaggac tgacaacctt
     2941 catgcttcgt cgtcgttgcc tacaaccaat ggcgactcct acgactccag cagaggcccg
     3001 tgcccttctc atcgaacggg ttcgaaatct cgcttacctg tatcagccgg aagacccctt
     3061 tactcttgca tctggccgta tttcaccgca tttcttcgat atgaaaccgg ttatgtgcga
     3121 tccagagtgc gctcatcttc tcggggttct aacccatgat acgcttgaga gcataggaga
     3181 tatcgatgca gttgggggcc tcgaactagg ggcagttcct ctgactggta ttgtgattgc
     3241 taaagcccct gcaggtagcg gacttcgcgg cttcattatc cggaaggaac ccaagggcag
     3301 agggggccga aagactggca atccgccagg cattgagggt tcgaccctga aggcaggaga
     3361 tcgatgcatt atcctcgagg atgtcaccac taccggcggt tctgcgctaa aggcctgtga
     3421 gagattaaca gaaatcggct gtaaggtggt tggttgtatc acaatccttg atcgagagga
     3481 aggtggtgct gatgccttta gagatgcaga tatccctctc tatgcattgt tacgcctttc
     3541 cgacatccga gcatgatgca tgaggctaaa tcccacccct gtctggttga gccatggctg
     3601 gaaccaacgt agtgatgaat acgagtgcag gcgacatcaa gattgaactc ttcacggata
     3661 cgatgccggt gactgcaggc aattttctcg ctcttgcttt agatggctac tacgacggcc
     3721 ttcacttcca tcgcgtcatc cagggtttca tgcttcaggg tggttgccct cactccgcag
     3781 atccaaactc ccctcgagct ggaaccggtg gtccaaaggg tggaggcact tacacaacta
     3841 ctgacggcca gtccattgtc cgtgaccgtg gcggcaatat ccctgatgaa ctgactcaaa
     3901 agttctctaa cgaggttggt acactctcga tggcaaatac gggtagacca aacagcggcg
     3961 gttcccaatt cttcgtcaat acgcagcaca acgatttcct cgattggttt gggcgcggtg
     4021 catccgctca tccagtattt ggaaaagtca tcgaaggaat ggatgtagtg aaagcgattg
     4081 aaacgactcc tactggcccc ggtgatcggc cccaaactcc tcaaaaaatc gagtccatta
     4141 ctctcgtaat ttgattgtta tggctttact gaatatgtgg tcagtcggcc atttattgca
     4201 atggtttggg tttggcttct taacgagaat tggctggcca ttgttccttt tcctatcgat
     4261 tggatgggag attttggaaa tcttccttcc atacgaattt acagaggagg tttgggagaa
     4321 caaaatttca gatattgtgg ttaacaccgt tggctttcaa attggtcgct ggtgccacct
     4381 tagaaggttc caaggtgggt ctgaaaccat cccttcaagc atcaaggata agtgactccc
     4441 ctgcgcgtag tggtagtatg cgaaaatgga ttccatgggt agctatcctc gctgtagctg
     4501 tagcggtgat gcttagccta cctaccacag tggatccaat cgtgaatagg actgtagccg
     4561 atgttccgtt gcccccttcg cctccatgtc cgcccggaag tgattgttct gatacacatc
     4621 cttgttctgc agaaacgatg ccatcagatg agtttgagac tcggtggact gctgtaggaa
     4681 ataatcgcat gatgtcatct ccccatgcaa ccgatctcaa tggagattca gtccttgaca
     4741 ttgttgttgg gactggtgcg gaagagtcgc actccggctc gattatcgca gtagatggtg
     4801 cttctggaaa tttactttgg gaagcggaaa ccgacggcga gatgttcgca tccgcgcagt
     4861 ttgaggatct caatggcgac aatgttgacg acattgctct tggaggaaga gatcagcaaa
     4921 tgttcgcagt gaatggtgca accggagaga tcctttggag tttcgataag gcctccacac
     4981 tccgtgaggc gtggtaccag ttttactctg gacagttcat tgatgacatc aatgatgaca
     5041 atgtcgccga ttggttagtg gccaatggcg gagatccgat gaaggaaccc gatgatgaga
     5101 gagataatgg gtacctgatg attctctcgg gagctgatgg actgccccta ggcgtcgcgg
     5161 atcttccaga tggtcgtgag acgtacatgt cccctttact ttacacgcct catcctgata
     5221 tggccatcga ggttctctat ggaactggtg gagagacttg ggatggcagc ctctggtcta
     5281 caagtataga tgccattatg caaggcgatc ttagcacctc gacccaaatt gtagcgccta
     5341 ctcccaacgt gaaaaagggc ttcatgactc ctcctgcgat tgcagacctc actctcgatg
     5401 ggattcaaga tatcgtggta tcctccttcg atggtcgatt gattctagtg gatggtcgta
     5461 attacacaca cacatggacc atcgatatgc atgaagttgt tgaaaatggg actgcttcag
     5521 gtctagagtc ttgggcctcg cccacggtag gatacttcac tccagattca gttcctgatg
     5581 tatttgtcaa ctatgttatc ggcgtcttcc cccagtattc atcgtcttac tatgcgcttg
     5641 tggatggagc tacaggcgac atcctttgga gtgagacgac agaacataca atcttcacga
     5701 gtcccctttc tgtggatctt gattctaatg gtcgagacga cattgtcctt gttcgagggg
     5761 ctgaagaatg gagagaagaa ggctctctat cttacaattc tgcaagcgtt cttgatactt
     5821 gtagtatgaa caccatttca ttgtacaatc gaacgaatct cagtattgga acaccgttga
     5881 ttgccgatct cgatatggat ggtgatttgg agatggttac tacgactact acgggatatc
     5941 tgagcgagac tgagggatgg acgttgacac gcatggatct caatgcatct acgccaacgc
     6001 gtattggttg gggtgcatac atgggctcac aatacgatgg gttgttcctc gattgaaaga
     6061 cctcttgaag gtcctaattc cgaaatatag gggggaatac tcaagcatcg gcaaatgacc
     6121 taatgaattt gtggaactga gtgtggatga ggcattgact ctggccaatc ttatccgttc
     6181 ggatcgtacg gttcctggaa ttactaggag tgcaaaggtg ccttcagagg atgcctccat
     6241 cgattggaca ttcaaaacag ccggtggaaa ggtgttgaag gacgctgata ggattgctga
     6301 aatcaacgca ctcactattc caccagcctg gacagaggta tgggtgtgcc ccaataatcg
     6361 ggggcatatc caagcaactg gtgtcgacgg caaagggcgc ctgcaataca gatatcatcc
     6421 tgattggatt tcaatgaaga ccagaatgaa gttcgcaggt attgcaggat ttgcagaagt
     6481 actccctgca ttaaggaaga aaatcactcg tgatttgaag cgcgattcca tggatatcga
     6541 aaaggtcagt gctcttgttg tccgccttat ggacctctat aacatccgag tgggtagtga
     6601 tgaatatgct cggaccaacg aatcttacgg tctaaccaca ctccgtaatg gtcacatgat
     6661 taggaagaca ggagataacg ccgaaggtag acatgatgct gtattctcat tcacaggtaa
     6721 gtccggtaag tcatgggaga ttctgattga ggaagataat atcgttgatc accttctcga
     6781 aacacgtaag ttgggatcaa gaggtaagga cacagacctg ttccacttcg tgaatccaga
     6841 gacaggaaac gagaacgatt tgaaggccga gcacatcaat caatatattc aggatgcaac
     6901 tggagaatct tacacagcga aggatttccg tacctgggct gcgacatgga aatgtgcata
     6961 tcgtctcgct tttatcgata acgacactag aggaagtgtt cttgaggaat tcattgacac
     7021 attacctgca aatgagaatc tccagaatct cgtgaataaa gatgagcgaa tcctcctcga
     7081 ttcagacact gcgaggaata aggcgatgct tgccgttatt gacacagttg catcaaatct
     7141 aggaaacact cgtgctgttt gccgttcatc ctacattcat cccctcttcc tcgaatcttt
     7201 cctcgatgaa agcctcggaa agaagtggtc taaaggtcaa gaagggccac gaaggacagg
     7261 cctctccgat gaagagtcaa ttgcgctgaa cgtccttcga caatgaggtt gaggacgaaa
     7321 ctccatagcc cgattgtgaa gtcattgatt catggaagaa cggatcgaac gcgacaccat
     7381 gggcacactt tcggtgccaa gcgatcgtta ctggggtgcg caaaccgctc gttccctgat
     7441 gaatttcgat atcggcgagg atgcaatgcc cgaaggcgtc atccgcgctt tcggcattct
     7501 caagatgtca gcggcagaga caaacaagga tctcggaaca ttggatggcg atgtagcgga
     7561 cctgattatc gccgcagcat ccgaggtcgc ctctggttcg ctgaatgatc attttcctct
     7621 acgtgtgtgg cagactggtt cgggcacgca gtctaacatg aatgcgaatg aagtaatcgc
     7681 aaatcgagca atagagatgg ctggaggagt gcttggaagc aaggacccgg tacatcccaa
     7741 cgatcacgtc aataaagctc agtccagtaa cgacaccttc cccacagcga tgcatatctc
     7801 agctgctgaa gccattatgc acagcgtgat tccttctgtc caatctcttc gggattcatt
     7861 ccaggaaaag tcagaggaat ggtcagatat tgtgaaaatt ggcaggactc atctgatgga
     7921 cgcagtcccc ctgactcttg gtcaggaagt tggaggatgg gtcgctcaga ttgacgcttc
     7981 tctatcccgt atcgaagcat cgatggatga cctctacgaa attgccctcg gaggtaccgc
     8041 ggtcggaacc ggcctaaaca cacatccgga tttcgccgta ggagttgcct caaagattgc
     8101 tggtcacact ggtcttccat tccgaagtgc tccaaacaag ttcgctcaac tcgcagctca
     8161 cgatgcaatc gtcgcgacga gtggagcgtt gagtgttctt gctgtttctc tgatgaagat
     8221 cgccaatgat gttcgatggc tcggttcagg tccaaggagt ggccttgggg agttagagtt
     8281 gccagcgaat gagccgggtt catcgattat gcctggaaag gtcaatccta ctcagtgtga
     8341 ggcgttgacg atggtttgtg cccaagtaat ggggnnnnnn nnnnnnnnnn nnnnnnnnnn
     8401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     8641 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngtttgtgc ccaagtaatg
     8701 gggaatcaca cagctgtaac cgttggcggg tcgcaaggta acttcgaatt gaatgtgtac
     8761 aaacccatga tgatacacaa cctactacac tctgcacgta ttttgacaga ttcctgtcat
     8821 tcattccgtg agcgctgtat cgatggcctt cagcccaatc gcgagaacat ccgagagcat
     8881 ctcgacaatt cattgatgct cgttacagct ctgaataacc acataggata tgatgcagct
     8941 gcgaagattg cgaagaacgc tcatgagagt gggttgacgt tgaagcagag tgcccttgaa
     9001 ctcggacttc tcactgaggc ccaattcgac gaatgggtcc ggccagaaga tatgactggg
     9061 ccgaaataaa cagcaatttt gcatctagaa cctctgtcca aagaggtaaa ggagaatctc
     9121 ttcatccaat gtccatggac gcttacttgg agttgctttc aaagcagaaa gacattgaga
     9181 cgattggcca aatatcgggc ctccttggat gggatcagga ggtc
//
LOCUS       DUKB01000219            2555 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_412746, whole genome shotgun sequence.
ACCESSION   DUKB01000219 DUKB01000000
VERSION     DUKB01000219.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2555)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_412746"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..2029)
                     /locus_tag="HA345_07260"
     CDS             complement(<1..2029)
                     /locus_tag="HA345_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85193.1"
                     /translation="MASRSCSILLVALMLGSLGTVSGAAGDIGYSGEISTLSGSSIGW
                     ADLGNGQAAIVNESGNLTVIEVLGQNAGNVVWTGIINVSVLSLDHNPTDGLIAVGHNQ
                     GAAIYSTVFESVIYSISSGPVDALSFDAEGDLWITNRLDKRASEYSNGVSTGAMTTAH
                     SIGITSIEVTPQGDIITGGRDRTLRVHQGDGSHTGTLTEPNSEVTDIMGDSNGLVHAI
                     TKDGLYLAYNSSDWNLSHSTTPSPPGELASLHDIDAERIALGGAVGLVHLMNRSTGIT
                     EQTLNQGNGEVVGILGEGDALVVLMSFASSSDIMLFDIDTDGDGVVDSVDAFPLDSTQ
                     TNDRDGDGYGDSVNGNNSDRFPDDSTQWIDQDNDGYGDNPNGTNPDLFPQNSDQHKDT
                     DGDGYGDASYGQNGDKYPTDASQWADRDGDGYGDNLEGNSPDACPDMGGQSSEDRLGC
                     PDMDADGWSDEGDYFPDEPTQWADSDMDGYGDAQQGYRGDGCANQAGTSTRYLLYDSA
                     EDRVKTVSTYGCPDSDGDGYADESEAYWDADNCPGSLVGNATEWLDEDRDCLGSNTDY
                     DDREFNVQTIEDYCERNENESACLKLNQPVYTPINETNSEVDSNDFSAQIISFAPYGA
                     GIAIAMMVVIGILGMLGRRVTNKSSKEDEYVQKGATKEIETGSIEQVGGIIE"
     gene            complement(2083..>2555)
                     /locus_tag="HA345_07265"
     CDS             complement(2083..>2555)
                     /locus_tag="HA345_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85194.1"
                     /translation="GMPGVLGTQPAVKPIKPLSPRPSPTVDEEKEEPVTEDEVIETIA
                     EMDVEDTPATKGPPGGGRMVRDSTAAPSVKGPPVRRTIQPSTPVEDESVGEGMVEIRP
                     TTDRRMLMPAEAATTAAIRPVKVMKPQESEEKTAPIKQVRVLRPQVAEASNEEE"
BASE COUNT          630 a          695 c          560 g          670 t
ORIGIN      
        1 cctcgatgat acctccaacc tgttcaattg aaccagtctc gatttctttt gttgcaccct
       61 tctgcacata ttcgtcctct ttagatgatt tattcgtcac acggcgacct aacatcccta
      121 agatgccgat gacaaccatc attgcgattg cgattccagc tccataagga gcgaaactga
      181 taatctgggc actgaagtcg ttggaatcca cctcactatt ggtttcgtta attggggtat
      241 agaccggctg attgagtttc aaacaggccg attcattctc attacgttca cagtaatcct
      301 caatcgtttg cacgttgaat tctcgatcat cataatcggt gttagaaccc agacaatcac
      361 gatcttcgtc gagccattct gtagcattac ctactagaga accgggacag ttgtcagcat
      421 cccagtaggc ttcagactca tcagcataac catccccatc tgaatcaggg caaccatacg
      481 tcgaaaccgt cttcacacgg tcttctgcag aatcatagag caaatatcga gtgctagtac
      541 ctgcttgatt agcacatcca tcgccacgat aaccctgttg agcatcccca taaccatcca
      601 tgtcactatc ggcccactgg gttggttcgt caggaaagta atctccttcg tcagaccaac
      661 catccgcatc catatcgggg caaccgagtc ggtcctcgga ggattgtccg cccatatcgg
      721 gacaggcgtc aggactgttt ccttcgaggt tatctccgta gccatctcca tctctatcag
      781 cccactgtga tgcatctgtt ggatacttgt ccccattttg cccataacta gcatcaccat
      841 agccgtcgcc atcagtgtcc ttatgctggt cactattctg tgggaaaaga tctggattag
      901 ttccatttgg attgtctcca tatccatcat tatcctgatc tatccattgt gttgagtcat
      961 cagggaagcg atctgagtta tttccgttaa ctgaatcccc atagccatcc ccatcgcgat
     1021 cattagtctg ggtgctgtct aaaggaaatg catcaactga atccactacc ccatcaccat
     1081 cagtgtcgat atcaaatagc ataatatccg aagaactggc gaaggacatc agcactacaa
     1141 gggcgtctcc ttctcctagg attcctacga cctcgccatt accttgattc agggtctgct
     1201 cagtgattcc agtactacga ttcatgaggt gaacgaggcc aaccgcgccc ccaagagcga
     1261 ttcgttcggc atcgatatca tgtaggctgg ccaactcgcc aggtggcgag ggggtcgtag
     1321 aatgactcag gttccaatct gaagaattgt atgcgagata gaggccatcc ttcgtaattg
     1381 catgaacaag gccattactg tcacccataa tgtcggtaac ttcggaattt ggttcggtca
     1441 aagtacccgt atgtgagcca tctccttggt gaactcgaag ggtccgatct cgtccaccag
     1501 tgatgatatc cccttgtggt gtgacctcaa tggatgtgat tccgatagag tgtgcagtag
     1561 tcatagcacc ggtagacaca ccattcgaat attcgctcgc tcgcttatct aatcgattgg
     1621 taatccacaa atccccttct gcatcaaagg agagagcatc caccgggcca gaagaaattg
     1681 agtagattac tgactcaaag accgtggagt aaatcgctgc accttgatta tgcccaacag
     1741 caatgagacc gtcggtcgga ttgtgatcga gagaaagaac actgacgttg ataatacccg
     1801 tccagaccac atttccagcg ttctgtccta ggacctcaat cactgtgaga tttccagatt
     1861 cattcacgat tgcggcctgt ccattgccca aatccgccca gccaatactc gatccagaaa
     1921 gagtagaaat ctctccagaa taaccgatat ctcctgcagc cccactaaca gtgcctagag
     1981 aaccaagcat cagggcgaca agtaagatgc tgcatgaacg agaggccatg gctattcaga
     2041 gcatgattac tctttcaacc cggcggagta ttgagcaaag gctcattcct cttcattgga
     2101 tgcttctgca acctgaggac gaaggactcg aacctgtttg ataggagccg tcttttcctc
     2161 cgattcttgc ggcttcatga ccttcacggg acgaatcgca gcagtggtag ctgcttctgc
     2221 tggcatcaac atccggcgat ctgtagttgg acgtatctcg accattcctt cgcctacaga
     2281 ttcatcctca acaggggtgc taggttggat tgtacgacgc actggagggc ctttcacact
     2341 cggtgctgca gttgaatcac gaaccattcg tccgccacct ggtggaccct tagtggccgg
     2401 agtatcctca acatccatct cggcaatcgt ctcaatcacc tcatcttccg taacaggctc
     2461 ttctttctcc tcatctactg taggagatgg cctcggagaa aggggtttga ttggtttgac
     2521 tgctggctgt gttcctaaga cccctggcat accgg
//
LOCUS       DUKB01000220            9197 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_199262, whole genome shotgun sequence.
ACCESSION   DUKB01000220 DUKB01000000
VERSION     DUKB01000220.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 9197)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 9197)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9197
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_199262"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(42..1178)
                     /locus_tag="HA345_07270"
     CDS             complement(42..1178)
                     /locus_tag="HA345_07270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019176180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoD"
                     /protein_id="HIH85195.1"
                     /translation="MAEMWISMGPQHPMTHGLWTLKVKIDGETIVDTIPDLGYIHRGV
                     EKICEARDFTQITPYCDRLCYASANTWSHSYVYAAENLLEVEVPERAEYIRLIAVELQ
                     RIASHLMWLGAYCPDIGNLTAFVYCLREREMMLDLLQELGGSRMHYNFPRIGGVKRDL
                     PHGFAMRCRAKVKLFLERIHEYEALLDESTIFLIRTQGVGYAKPEEMVNHGVTGPNLR
                     AGGVNYDVRWAHPYSVYDELDWIPSVERSSVKGADCYDRYRVRLDEMKTSADLVLQAL
                     DGIPGGADTYHEPGDPALLGKAPSRASDGQTGFHHFEDPRGESLFYIVGGGDARGKNP
                     YRVSIRSPMFITIPYAAKCMIGYKIADVPAIMGSFDPCIGETDR"
     gene            complement(1191..1853)
                     /locus_tag="HA345_07275"
     CDS             complement(1191..1853)
                     /locus_tag="HA345_07275"
                     /inference="COORDINATES: protein motif:HMM:NF012549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HIH85196.1"
                     /translation="MKVDNDKQVSASNDLISAIQAEFADEGLTCELRFHAGGKQKRPF
                     VFIECPPAIWLIVAETLSEVHGVDYCSMITGIHWPEKAPEMEWQVVVHLMRMSIQNPK
                     SKDGILIPTITDASIVQGAAMPLELEISIPIPETRTPSIPSVQHIWVGADWNEKETWD
                     LVGIDFDGHKEMRRVLQPHETPAGFHPLQKQHKLRYHEFNEMYDDAQGFMRKSDDIGK
                     VK"
     gene            complement(1860..2456)
                     /locus_tag="HA345_07280"
     CDS             complement(1860..2456)
                     /locus_tag="HA345_07280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019176182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HIH85197.1"
                     /translation="MTDDGQNYSIFNSRLLIDVVGDVTDEALKASKLKEIIGIIGGRL
                     FNWASRKSFFPLHLGIKCCALEMAAAGGPRFDAQRFGLFFRSSPRQCDVLLVNGPISK
                     KFADPIVRLWEQMPEPKWCIAMGECAISGGPYFQSYNVLEGVDTVIPVDVYIPGCPPR
                     PEALIDGFDLLRQRILLNGVSPEMLSEDTPSPVVVGDD"
     gene            complement(2466..2933)
                     /gene="ndhC"
                     /locus_tag="HA345_07285"
     CDS             complement(2466..2933)
                     /gene="ndhC"
                     /locus_tag="HA345_07285"
                     /inference="COORDINATES: protein motif:HMM:NF012717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HIH85198.1"
                     /translation="MTSIPAEYLAVGLMAIVGILFPFGGFLTSYFLRPTQDPNDPTKM
                     RSILIPGMESDQSLYPRRLSTYECGADPIGDARIEFHFQYYWYAIIFLVFDIAFMFLS
                     FAGILVAESTSQGGSSVVSLDEAWGGLVSLTAIFGFMVLGVWYVFRKRGRIYI"
     gene            complement(3048..5897)
                     /locus_tag="HA345_07290"
     CDS             complement(3048..5897)
                     /locus_tag="HA345_07290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85199.1"
                     /translation="MQVLPFVVDVVQMLPRSWRKGMHTDGGHLIDGVTGVPMASGRRQ
                     ALFGVLLMLTLSLAPIVSAEAEVTLSSNTMAQEASPDEAAEYTITVRNTGSDDITVQL
                     ATAQGQDCQGFTSNIEQVSETISSGSSATVTLTVTVAQGAEGDCETTVTATANAAPPA
                     PPGQPAQDDITVTTTAGEGGNGLFGVSLSTSQPQKTYSSGEEEDWSVTVENTGQNSAQ
                     ITLTLDGDSSCDSDELSATVDPAQVTLQAEGDTEDVTVTVAIPDGSSTGAGSHCFILR
                     AEVTNDQNPSGRASDNLSLTLTIPERKECSASVSPTTLDITPGNTASVSFTVSNQGNT
                     DWSVSTDTSGTFQDWASNQDPSSALLVIDGSRSFTYDITPDDSIEAGDTTMITFKGMD
                     GTAMKCSTQLAVRLGQSYAASLNVATSILSNIDPGTPGVNSVTVGNLGNGPDILSLGA
                     TMSFVDGSGTPNGWTVQFASPSVSLSSRHSNSGDSETVEVLVGVPENARADKAVEVIV
                     TVTSNGASSSDVLATGAFEVRVAMFHEVSVSTIVGEGEVMQQTGSAGQIVRFPMTVNN
                     QGNVEDNFLLEVCDGGVPGDCVAPSWNTRFTDIQGNRITQITIQPGESAEIELQVTVS
                     STAFEFEDAEFRTNVYVQAQTSTMTSSDFRVQVSNFDYAANIAFVNPGDDPDTMDLSL
                     APGSSFRFDVMVTNAGNSSFVDEALVNAFGMEGLIDVTLTMNGSQLSDAFSIGAAGSE
                     SVLITVDLSLTELALDGDYGAITIEAASVNDAAEISTLNILVSVTTIYELDVTVISGT
                     ELEVNPPNSAVFELEVTNIGNAEAECIVNMSEALRGWSLSHNADTSFNLQPGESITVL
                     VKASPPVGLIDEDAFSFVVKIEPVESAIDGTPIDLKAIGSQQTLMDRIGLDEQQQQYV
                     QFGGAGIIALLLVGMIMRTVLQNRRYSKEFESDDS"
     gene            complement(5824..>9197)
                     /locus_tag="HA345_07295"
     CDS             complement(5824..>9197)
                     /locus_tag="HA345_07295"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:NF013636.1,HMM:NF019325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH85200.1"
                     /translation="SQGDHGRYTTSAADVDSRTSQYDQFWSYDGFTVLYSAGNDGSTG
                     LTPPATAKNSIAVANHHNRGGSAPDTIAQSSSKGPTDDDRIKPDLAAPGTWVRSCLSQ
                     DAQDTGGNSWKSTWYIEYSGTSMASPNAAGAAALVYEYLTEVAGRPSPQGALIKALLV
                     LGAEDMGARDIPNNSEGWGRINLANSLIPGSDTGVFVDDRTTLRSGGSATYEFNLTRS
                     GSPLKVVLAWSDYQGSSSSSNQLRNDLNLEVTAPDGTTTYLGNAFQSGRSAPGGSADN
                     KNNLEVVLVDSAVSGVWQVRISDVYHGGGRADQPFALAVRGVNVNDLRSDPIVILSDV
                     SYSSEVPQVGEQIEINVPIMNQGSGTAIDLVVDAGIQRVGTVGTDLGRQTIGLGPGQT
                     RIVSWMWTPQSEGEVTLQIIIDPDGAIEEADEDNNIANIPLVISAPGIRIDTNVLAQS
                     VISANQASTTWDLRLKNTALLPTNATIESGDPVRDHDSQSFNWFRSFNRTAIPLEGSE
                     STDVSFTLVHPSPPEPGTYRIPLTGVDEDNSLTFPLDLQLIVPVLPDVQTQTTSSQIS
                     LHPVDNTSFEFILTNRGNGPQGYDLRIDAPQSWHMGFDDLGSTIGASGGSSGTMGIGE
                     SLTVRMTAVPPYSMISAGTALQATVTVTSQVDPSESWTLDLPMVVAPFDRLDARLDTQ
                     VGVLAKDASIPLQYTITNTGNREVTITPDAEDRPSGWSISNNLQSFTLGIGEEEIYGV
                     GLIGNGYATSGSFNLLFRTDDGYEISAPARLNVEDDISGSIVFSSILLADGTLGSDTM
                     DVGSVSSGQPGFLLEWLVTNDGSTSWTGTYSLDVPSEWSYSCIDPGTLAAGVSDYLTC
                     SVVMPDNVEAGSIPAIGAMVSADDMDLLDIVSIRVASVESVTITTLTQIETMEIGSTT
                     SLEFEITNDGNVAIQHRIVVTSDDDWSIVILDDPSINLNPGSSQRIDIEITPTSRGSS
                     AIRVQVLGPEDVTIGSIEVDVYSERSSVEPAEGGSGAIILGIGIVLIGILAGAVMVLL
                     RKDKSTPQTIPVKARVGFSGTLPPPPTTSKPTVTLPKVSCWACSQPIEAEKRRACRDC
                     GARYHALGGCEHAGITVCRRCGADVASFMEEGHAH"
BASE COUNT         2500 a         2329 c         2074 g         2294 t
ORIGIN      
        1 ctgctcctcg aacatcgaac cagtcagttg caaccatatt atcaccgatc ggtctccccg
       61 atacaaggat cgaagcttcc catgattgcg ggaacatctg caattttgta gcctatcata
      121 cattttgcag catatggaat tgtaatgaac atgggagaac gaatggatac acggtatgga
      181 ttcttgcctc gagcatctcc tccacctaca atgtaaaaca atgattcacc cctcggatct
      241 tcgaaatgat ggaatccagt ctgcccatca cttgctcttg atggagcctt acccaagagt
      301 gcaggatcgc ctggttcgtg atatgtatcg gcgccaccag gaattccatc taatgcttgg
      361 agtacaaggt ctgcagaggt tttcatttca tcaagcctta cacgataacg gtcgtaacaa
      421 tcagcgccct ttaccgatga acgctctact gacggaatcc aatctaactc gtcgtaaact
      481 gagtaagggt gagcccatct aacatcataa ttcactccac cggctctgag gttggggcct
      541 gtgactccat gattcaccat ctcttcgggt tttgcatatc caactccctg agtcctaatc
      601 aaaaatatcg tagattcatc aaggagagct tcgtactcat gtatcctctc caagaagagt
      661 ttcacttttg cgcggcaacg catagcaaaa ccatgaggta aatcacgttt gacgccgcct
      721 attcttggga aattgtagtg cattcttgaa cctcccaatt cctgaagaag atcaagcatc
      781 atttcgcgct cacgaaggca atatacgaat gcagtaagat tgccgatatc tgggcagtaa
      841 gctcctagcc acatgaggtg gcttgctatc ctctgtaact cgactgcaat gaggcgaata
      901 tactctgcac gttctggaac ttctacttct aacaaattct ctgccgcata gacatacgaa
      961 tgtgaccaag tattggcact agcatagcat aaacgatcgc aatacggagt gatttgggtg
     1021 aaatctcgag cctcacaaat cttctctaca ccgcgatgaa tgtagcctaa atcaggtatc
     1081 gtatcgacga ttgtttcacc atcaatcttc actttaagag tccaaagtcc atgagtcata
     1141 ggatgctgcg gacccataga aatccacatt tctgccatgc gaatcactcc ttacttgacc
     1201 ttgccaatat catccgattt acgcatgaag ccttgggcat catcgtacat ctcattgaac
     1261 tcatgatatc gcaacttgtg ttgcttctgg agaggatgga agcctgcagg tgtctcatga
     1321 ggctgtagga ctcgcctcat ctccttatgt ccatcaaaat caattcccac aaggtcccat
     1381 gtctctttct cattccaatc tgcgcccacc cagatgtgct gaacggatgg tatagaaggg
     1441 gttcttgttt ctggaattgg tatgcttatc tccaattcca aaggcattgc agcgccttga
     1501 acgatagatg catctgttat cgtaggaatc aatattccat ccttggattt aggattctga
     1561 atgctcattc tcatcaagtg cactactact tgccattcca tttccggtgc cttttccggc
     1621 cagtggatac cagtaatcat tgaacaataa tcgacaccgt ggacctcgga gagagtttct
     1681 gctacaatta accaaattgc aggaggacat tcaatgaata caaagggtct tttctgtttc
     1741 ccgcctgcat gaaatcgtaa ttcacaagtc aaaccttcat cggcaaattc tgcttgaata
     1801 gcactaatca ggtcattgga tgcagagacc tgcttatcat tatccacttt catacccatt
     1861 caatcatccc ctacaacgac tgggctcggc gtatcttctg aaagcatttc aggactgacg
     1921 ccattgagga gaattcgctg gcgaagtaaa tcgaatccat cgattagagc ttctggccga
     1981 ggagggcaac ctggaatgta gacatcgact ggaattacag tatccacgcc ttcgagcaca
     2041 ttgtatgact ggaaatatgg gccaccagag attgcgcatt cacccattgc aatacaccac
     2101 tttggctctg gcatctgttc ccaaagtcgc acaatcggat ctgcaaactt ctttgatatc
     2161 ggaccattga caagcagtac gtcgcattgc ctagggctgc ttcggaagaa aagtccgaaa
     2221 cgttgagcat caaatcgtgg accaccggcg gctgccatct ctaacgcaca acacttgatc
     2281 ccaaggtgta acgggaaaaa cgactttctc gatgcccaat tgaaaagccg gccgccgatt
     2341 attccaatta tttctttgag cttgcttgcc ttcaaggctt catcggtaac atcgccaacg
     2401 acgtcaatca acaatctact gttaaagatg gagtagtttt gcccgtcgtc agtcattttg
     2461 ccacctcaga tgtagatcct gccccgctta cggaaaacat accatacgcc aagaaccatg
     2521 aatccaaaaa ttgctgttag gctaactaat ccgccccatg cctcatccag ggatacgaca
     2581 ctgctgccac cttgtgaggt tgattctgca accagaatac ctgcaaatga taggaacatg
     2641 aatgcaatat caaaaacaag gaagatgatg gcgtaccaat agtattggaa gtgaaattct
     2701 attcgagcat ctccaattgg atctgcccca cattcatagg tactcaatct tcgaggatac
     2761 aggctctgat cggattccat tccggggata agtatggagc gcatttttgt ggggtcgttt
     2821 gggtcctgtg ttgggcgaag aaaataggat gtcaagaatc ctccaaaggg gaagagtatg
     2881 ccgacgattg ccataagtcc aaccgccaaa tattcggctg gtattgatgt caaacctcgc
     2941 acctcaaagg accctcaagt cccgtaagtc aaaacaccgt aactctgctc ataaggctat
     3001 tctttacatc gcctaaagca ccattagaaa cgtgtgcatt ctacatctca agaatcgtca
     3061 gactcgaatt cctttgaata acgacgattc tgtagtactg tcctcataat catgcccact
     3121 aatagaaggg cgataatgcc tgcaccacca aactgaacgt actgctgctg ctgttcgtca
     3181 agaccgattc gatccatcag agtctgctga gaaccgattg ccttcaaatc aattggcgtc
     3241 ccatcgatgg cggattccac aggttcaatc ttcacaacga acgaaaaggc gtcttcatca
     3301 atcaaaccaa ccgggggaga tgctttgact aagacagtga tagattcgcc aggctgcaaa
     3361 ttgaatgaag tgtctgcatt gtggctcaaa gaccatccac gaagtgcttc agacatgttg
     3421 actatgcact ctgcctcagc attgccaatg tttgtgactt ctaattcgaa aactgctgaa
     3481 ttgggtggat taacctcaag ctctgttcca gagataaccg taacatcgag ttcgtagatt
     3541 gtagtgacgg aaacaagaat gttgagcgtc gatatttccg ccgcatcatt cacagatgca
     3601 gcctcaatcg taatggcgcc atagtcacca tccaatgcca gttcagtaag gcttagatcg
     3661 acggtaatga gaaccgattc agatccggct gcacctatcg agaaagcgtc agatagttgg
     3721 ctgccgttca ttgtcaaggt aacatcgatg agaccttcca ttccgaaagc attgacgagg
     3781 gcttcgtcca caaagctact attgcctgcg tttgttacca tgacatcgaa tctgaatgat
     3841 gagccaggag caagagagag atccatggtg tcaggatcat cgccaggatt tacgaatgcg
     3901 atatttgcag catagtcgaa atttgaaacc tgaactcgga aatcagatga ggtcattgtc
     3961 gatgtctggg cctgaacgta gacattagtt cggaactctg catcctcaaa ctcgaaagca
     4021 gtcgatgata cagttacctg tagttcaatc tctgcactct caccaggttg aattgtaatc
     4081 tgtgtgatac ggttcccctg tatgtcggtg aagcgagtgt tccaagacgg agccacacaa
     4141 tcgccaggaa ctccgccgtc acagacctca agcaggaaat tgtcctcaac gttgccctga
     4201 ttgtttacag tcatcgggaa gcgtactatc tgcccggctg aaccagtctg ttgcatcacc
     4261 tcgccctctc ctacaattgt agacacagag acctcatgga acatcgcaac acgaacctcg
     4321 aaagcccctg tcgcaagcac atcagaactc gatgcgccat ttgaagtgac tgtcacaata
     4381 acctcgactg ctttgtcagc gcgcgcattc tctggcacgc ctacgagtac ctcaactgtc
     4441 tcactgtccc ctgagtttga atgacgacta ctcagagaaa cagaaggaga cgcgaactga
     4501 acggtccaac cgtttggagt acctgatcca tcgacaaagc tcattgtggc gccaagtgaa
     4561 aggatatctg gaccgtttcc gagattacca acagttactg aattgacacc tggagtaccc
     4621 gggtcaatgt tcgacagtat ggatgtggca acattgagtg atgccgcata tgattggcct
     4681 aatctcacag caagttgagt ggaacacttc atcgcagtgc catccattcc cttgaacgta
     4741 atcattgtag tatcgccagc ttcgatggaa tcatctgggg tgatatcgta ggtgaaacta
     4801 cgactcccat caatcactaa caaagcagat gatggatctt ggttcgaagc ccaatcttgg
     4861 aatgtaccag aggtatcagt gctaacagac caatcggtat taccctgatt agagacagtg
     4921 aagctaaccg atgccgtgtt accgggcgta atatccagag tggttggact aacgcttgca
     4981 gaacattcct ttctctctgg gatagttagg gtcaatgaca agttatccga tgcacgaccc
     5041 gacggattct gatcattagt aacctctgca cgcaagatga agcaatgcga accggccccc
     5101 gtactactac catctggaat ggctaccgtg actgtgacat cctcagtatc tccttcagcc
     5161 tgaagtgtga cttgagccgg atcaactgtg gctgacaatt catcagaatc acaagatgaa
     5221 tctccatcca gagtcaatgt tatctgggct gagttctgac ctgtgttctc gactgtaacg
     5281 ctccagtctt cctcttctcc actggaatag gtcttctgtg gttgagacgt tgaaagagac
     5341 acaccgaaaa ggccattccc tccttcccct gcagtagtag tgactgtaat atcgtcctgc
     5401 gcaggttgac cgggtggagc aggtggagcc gcattagctg tagcagttac tgtagtctca
     5461 caatcacctt cagcaccttg agctacagta acggtcaacg tgacggtagc actcgaaccc
     5521 gaagaaatag tctcagaaac ctgctcaatg ttcgatgtga atccttgaca atcctgacct
     5581 tgagcggttg cgagttgcac tgttatgtca tctgaaccag tatttcggac tgtgatggta
     5641 tactctgcag cctcatcagg actggcttcc tgagccattg tattcgagga taaagtgacc
     5701 tctgcctctg cgctcacaat gggtgctaga gagagagtta gcatgagcaa aacgccgaat
     5761 agagcctgcc tccgaccgga tgccataggt acccctgtaa ctccgtcgat taaatgacct
     5821 ccgtcagtgt gcatgccctt cctccatgaa cgaggcaaca tctgcaccac atcgacgaca
     5881 aacggtaata cctgcatgct cacatcctcc taacgcatga tatcgggcac cgcaatcacg
     5941 acaagcacga cgtttttccg cctcaatggg ttgactacaa gcccaacagg aaaccttcgg
     6001 aagtgttacc gtaggcttcg aagttgtagg cggcggtggc aaggtgccac taaatccaac
     6061 acgagccttt acaggaatag tctgaggagt tgacttatcc ttgcgtaaga gcaccattac
     6121 tgctccagca agaatgccga tgaggacgat tccgattcca aggataatag cacctgaacc
     6181 accctcagct ggctccacgg aagatcgttc tgaatacacg tcaacctcaa tagatccaat
     6241 agtgacgtct tctggaccaa gaacctgaac acgaattgct gaactccctc tggaggttgg
     6301 tgtaatttca atatcaatac gttgactaga acctggattc aaattgatgc taggatcatc
     6361 gagaattaca atcgaccagt catcatctga cgtgactact atacgatgct ggattgctac
     6421 attaccatca ttcgtaatct caaattctag agacgttgtg gaaccaatct ccatggtctc
     6481 aatctgagtc aatgtagtga ttgtaacgga ttctactgaa gcaactcgga tagatacgat
     6541 gtcaagcaga tccatatcat ctgctgaaac cattgcacca attgccggaa ttgaaccagc
     6601 ctccacatta tctggcatga ccacggaaca agtaaggtag tctgacacgc ctgcagctaa
     6661 tgtcccagga tcaatacacg aataggacca ctcggatgga acatctagtg aataggtccc
     6721 tgtccatgaa gtgcttccat cgttagtcac caaccattcc agtaagaagc cgggttgacc
     6781 agatgataca gaacctacat ccatcgtatc gctacctaaa gtgccatccg cgagaagtat
     6841 agatgagaat acaatggaac cactgatgtc atcctcaaca ttcaaccgtg ctggagcaga
     6901 tatctcgtat ccatcatcag ttcggaacaa gaggttgaat gaaccggagg ttgcatatcc
     6961 gttaccgatg agtccgacac catagatttc ctcctcgcct ataccaagtg taaacgactg
     7021 aagattgttt gagatactcc aaccggaagg gcgatcctct gcatctggag taatcgtgac
     7081 ctcacgatta cctgtattcg tgatagtgta ctgtaatgga atcgaggcat ccttcgcgag
     7141 aacacctacc tgcgtgtcga gacgggcatc aagtcgatcg aagggtgcaa ccaccattgg
     7201 taaatcaaga gtccatgatt cgctaggatc tacctgagag gttactgtaa ctgtagcctg
     7261 caatgcagtc cctgctgata tcatagaata tggtggcacc gccgtcattc gaactgttag
     7321 cgattcacca atgcccatag taccagagga accacccgac gccccaattg ttgagccaag
     7381 gtcatcaaaa cccatgtgcc aactctgagg tgcatcaatc ctgagatcat atccctgggg
     7441 accatttcct cgattcgtga ggataaactc gaaggaggtg ttgtcgactg ggtgtaatga
     7501 aatctgagat gaagtggtct gtgtctgcac gtccggaaga acagggacaa tgagttggag
     7561 atccaacggg aaggtcagac tgttatcttc atccacacct gtcaagggaa tccgataggt
     7621 accaggttca ggtggacttg gatgaaccaa cgtgaatgag acatcagtcg attcacttcc
     7681 ttccaacgga atcgcagttc gattgaaaga acggaaccaa ttgaacgact gagagtcatg
     7741 gtccctaacc gggtctcctg actcgatggt ggcgttcgta ggtaacaatg ctgtattctt
     7801 gaggcgaaga tcccatgtgg tagaggcctg gtttgctgaa atcacactct gtgcgagaac
     7861 attcgtatcg attcgtatgc ccggtgcaga aattacgaga gggatattcg caatgttgtt
     7921 gtcctcatca gcttcttcga tggctccatc aggatcaatg atgatttgaa gagtaacttc
     7981 accttcgctc tgcggcgtcc acatccatga gacaatacgg gtctgaccag ggccaagacc
     8041 tattgtttga cgacctaaat cagttccaac agtacctact cgctggattc ctgcatcgac
     8101 caccaaatcg attgcggtac cactaccctg attcatgatg gggacattaa tctcaatctg
     8161 ctcaccaacc tgagggactt ctgaggaata ggacacatcc gagagaatta caattggatc
     8221 cgaacgaaga tcattcacat taacgccccg aacggcaagt gcaaacggct ggtcagcccg
     8281 ccctccacca tgatatacat ccgagatacg aacctgccaa acaccagata ctgctgaatc
     8341 gacaagaacc acttcgaggt tgttcttatt gtccgcagaa ccacctggag cagagcgccc
     8401 agattggaaa gcgttaccga gatatgtcgt ggtaccgtct ggtgcagtga cctccagatt
     8461 caaatcgttt ctcaattggt tactactgga agaacttccc tggtagtcgg accaagctaa
     8521 caccaccttg agtggagaac ccgatcgtgt caggttgaac tcataggttg cagaacctcc
     8581 ggaccgaagg gtggtacgat catccacgaa aacgccagtg tcagaacctg gaatgagaga
     8641 gtttgcaagg ttaatccgac cccaaccttc gctgttgttc ggaatatccc gtgcccccat
     8701 atcctcggca ccgagaacaa gaagtgcctt gatgagagcg ccttgtggtg acgggcggcc
     8761 tgctacctca gtaagatatt cgtatactaa ggctgcagca ccagcggcat tgggagaggc
     8821 catcgaagtt cctgagtact cgatgtacca ggtgctcttc cacgaattac cacctgtatc
     8881 ctgtgcatcc tgagataggc aagaacgaac ccaggtaccc ggagctgcaa gatctggttt
     8941 gattcggtca tcatctgtcg gacccttgct acttgattga gcaatggtat ctggcgcgct
     9001 tcctccacga ttatggtgat tagccacagc aatggagttc ttcgccgtag cagggggagt
     9061 caaccctgtt gaaccatcgt tacctgcaga atagaggact gtgaacccat cataggacca
     9121 gaattgatca tattgtgagg tgcggctatc aacgtctgct gcagaggtag tataccgtcc
     9181 atggtcgccc tgtgaac
//
LOCUS       DUKB01000221            5862 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_168384, whole genome shotgun sequence.
ACCESSION   DUKB01000221 DUKB01000000
VERSION     DUKB01000221.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5862)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5862)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5862
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_168384"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="HA345_07300"
     CDS             complement(<1..411)
                     /locus_tag="HA345_07300"
                     /inference="COORDINATES: protein motif:HMM:NF012964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HIH85201.1"
                     /translation="MTRGVILINVGTPDEATTASVRRYLKEFLLDPDVIDIPAPLRHM
                     LVRGIILNLRPRKVAPRYASIWMEEGSPLRVYTQRICQALNIENKDIEFEVGMRYGNP
                     SIRDALERLRSKGITELLIAPLYPHHAQSTTETSL"
     gene            503..691
                     /locus_tag="HA345_07305"
     CDS             503..691
                     /locus_tag="HA345_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85202.1"
                     /translation="MPFEEPKTIEEDLALMAEAMEMGINPFPPKREKKRWGRIALGSF
                     MIVLMVSWTSQFMMRFLP"
     gene            complement(719..791)
                     /locus_tag="HA345_07310"
     tRNA            complement(719..791)
                     /locus_tag="HA345_07310"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(755..757),aa:Gln,seq:ctg)
     gene            complement(842..1870)
                     /locus_tag="HA345_07315"
     CDS             complement(842..1870)
                     /locus_tag="HA345_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012256159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HIH85203.1"
                     /translation="MSIKLNVIERPKADYKGGPSSLCPGCGHDQISNVIIQACWENGI
                     EPHRIAKMSGIGCSSKTPAYFLGQSHGFNTVHGRMPSVTTGANMINKNLVYLGVSGDG
                     DSASIGIGQFIHAIRRNLNMVYIIENNGVYGLTKGQYSATVEIGSKKRKGMPNEKPPI
                     DLCKLAINVGCGFVARSFSGSKKQLTALLKAALSHKGMAVIDIISPCVTFANNDESYR
                     SYGYVKDNGEELHGVDYIHHFEPIAEVDIPEGEFEDVELFDGSVLRLETIGQSYDYTD
                     PTEALAALHNAEKEKKHITGLLHHSNEMQTADEDQKLVDTPLSDLSDDLMRPSREKHA
                     AMMARFLA"
     gene            complement(1867..3654)
                     /locus_tag="HA345_07320"
     CDS             complement(1867..3654)
                     /locus_tag="HA345_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017950792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HIH85204.1"
                     /translation="MDYIINDFTMNIATANGTGSQSANLILLNSMFEMGVPVSGKNLF
                     PSNISGLPTWYIIRVSDAGYQAPGDRTHIQVIMNKDTWFKDIESVEPGTIIIYNEDVK
                     MPVDREDCLVFGMPMTKMARGINPKLAKMIANMYYVGIIQHLLHIEQGALERAVEGQF
                     KGKTAAVELNLRAIEEGRTYASDNLDWDQPYRLQEREKDNQKFLVDGNESVALGAIYG
                     GINMLSWYPITPSSSMAEGIIQWLPELRDTEDDLSTCAVVQAEDELAAAGMVIGAGWA
                     GGRGMTCTSGPGISLMSEFIGLAYFAEIPGVIWDVCRVGPSTGLPTRTQQGDLNLLRE
                     ASHGDTDHIVLIPGTVEECFEFGWRAFDYAERFQTLVFGFSDLDLGMNNWVCSGFEYP
                     DEPLDRGKVLRTQEQMDAVQNYGRYRDVDGDGIPYRTLPGSGLDPILYRGTGHDEDGV
                     YSEDPVVYRELMERLKRKTDNARDLLPAPILREETELEIGIIYMGSMENTIQEIDDII
                     EETGVKVSQCRVRALPLHSEVEAFVERHDKVIVLEINRDGQLYGVLRKELPIHLVPKI
                     ISVAYSDGMPPRARFYAERIIDTLKEENQ"
     gene            3838..4881
                     /locus_tag="HA345_07325"
     CDS             3838..4881
                     /locus_tag="HA345_07325"
                     /inference="COORDINATES: protein motif:HMM:NF012387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HIH85205.1"
                     /translation="MPTPQALKDAWDEARSQTERGEPEDALKTMRSAWNTHGKDADDH
                     RTWTIVADAEAKIAGESTRPKDYRKSIQHYEKALDKGAGKDVRRQMNKVRADMDERGI
                     GMGSFRLYDDGSPTVYGVFALFVVGMLLLVSLRYVDGGLDLSDIFASDDDDSNPISVG
                     STAQLSISYVPAGMSESNRVTVAVMIDLHSEDAPVHVDNFVKLAQNGDYDNTIFHRII
                     DNFMIQGGDFTNMDGTGGHAAEFYGYCNGQPSASACSSEDAYTIPDEANNGRVHDPCV
                     LSMAKTSSPNTGGSQFFVIPEDSNPTHLDGVHTVFGTVTSGCSFVTAISSVDTGSNDR
                     PVYDVRLESVTIS"
     gene            4948..>5862
                     /gene="acnA"
                     /locus_tag="HA345_07330"
     CDS             4948..>5862
                     /gene="acnA"
                     /locus_tag="HA345_07330"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002649191.1"
                     /note="catalyzes the conversion of citrate to isocitrate;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
                     /protein_id="HIH85206.1"
                     /translation="MSDEHPFVALREFETSSGATATYAALSALEESGVVDNLENLPYS
                     IRILLEAALRKCDGFLVTKEDVKRIAGWSPTQSPAEIPFMPSRVILQDFTGVPAVVDI
                     AALRDAMVELGGDPVKVNPQVPVDLVIDHSVQVDVSGLFPDARERNLEIEYQRNMERY
                     QFLKWGQQSLDNFRAVPPGRGIVHQVNLEWIASVAREERGVWLMDSLVGTDSHTTMIN
                     GLGVLGWGVGGIEAEAVMLGQPIYMLLPEVVGFELTGTLRAGVTATDMTLRIVEMLRE
                     HGVVGKFVEFHGMGLSNLSLPDRATIANM"
BASE COUNT         1369 a         1344 c         1517 g         1632 t
ORIGIN      
        1 caatgaggtt tcagtagttg attgcgcatg atgtgggtag agaggggcaa ttaggagttc
       61 agtaattcct ttactcctta atcgttcaag agcatctcgg attgaggggt ttccatatct
      121 cattccaact tcaaactcga tatccttgtt ttctatgttg agagcttggc aaatcctctg
      181 cgtatatact ctgagtggcg acccttcttc catccatatc gaggcgtatc gaggtgctac
      241 ttttcttggc cgaagattaa ggatgattcc tcgaactagc atatgtcgaa gcggagcagg
      301 aatgtcaatt acatctggat cgagaaggaa ttccttgaga tatcggcgga ctgaagcggt
      361 agttgcttca tctggtgtac caacattgat cagaatgact cctctagtca tggtctcccg
      421 aaagtcaacc agtgtatgag tgtctgcttc tttcctcaat cttatccaaa ttcttgatac
      481 acattatctt gaatttcatc atgtgccgtt cgaggagccc aagacaatcg aggaggacct
      541 cgctctgatg gcagaggcga tggagatggg catcaatccg tttcctccta aacgtgagaa
      601 gaagagatgg ggtagaatcg ctctcggatc gttcatgatt gtcttgatgg tatcctggac
      661 gtcgcagttt atgatgcgat ttcttccata gtggtagttg cccgtttagt aagaaaagta
      721 gcccctcccg gattcgaacc agggtcacga gatccagagt ctcgtatgat ggaccactac
      781 actaaggggc tgtgtaatcg gccgagtcgg ccagtgtata tcagaacagc ggagttattg
      841 gtcaagcaag gaaacgtgcc atcatagcag cgtgtttctc gcggcttgga cgcatgagat
      901 catcactaag atcggagaga ggagtgtcta cgagcttctg gtcttcgtcc gctgtttgca
      961 tttcattact atggtgaagt agtcccgtga tgtgtttctt ttctttctct gcattgtgga
     1021 gtgctgcgag tgcttctgta ggatccgtgt agtcatagga ttgcccaatt gtctcaagac
     1081 gaaggacact accatcgaac agttcgacat cttcgaactc cccttccgga atatcgactt
     1141 cggcaattgg ctcaaagtgg tgaatgtaat ccacgccatg caactcttcc ccgttgtctt
     1201 tgacatatcc atacgagcga taagattcgt cgttatttgc gaaggtgaca cagggtgaga
     1261 tgatgtcaat gaccgccatt cccttgtggc ttagagcagc cttcaatagg gcagtcaact
     1321 gcttctttga gccggagaaa gatcgggcta cgaaaccaca accgacattg attgcgagtt
     1381 tacacaagtc aatagggggt ttttcgttag gcattccttt gcgtttcttt gatcctattt
     1441 cgacagtcgc tgagtattgc ccttttgtta agccatatac accgttgttc tcaattatgt
     1501 agaccatgtt cagattgcgt cggattgcat ggatgaattg cccaattccg atacttgcag
     1561 agtcaccatc gccggagacg ccaagataaa cgagattctt gttaatcata ttcgcacctg
     1621 tggtcaccga gggcatacgg ccgtggacag tgttgaatcc atgcgattgg ccaagaaagt
     1681 aggccggtgt cttagatgag caacctatgc cgctcatctt tgcaatacga tgaggctcga
     1741 taccgttttc ccagcaggcc tggatgatga cgtttgaaat ttggtcatgg ccacaaccgg
     1801 ggcataaaga ggatggtcct cccttgtaat ctgcttttgg tcgttcgatt acattcagtt
     1861 taatgctcat tgattttcct cctttagggt gtctatgatt ctctcggcat agaatcgtgc
     1921 ccgaggaggc atgccgtcag aataggccac gctgataatt ttcgggacaa ggtgtatcgg
     1981 gagttccttt cgcaggacgc catacagttg gccatcacgg ttaatttcga ggacaatgac
     2041 cttgtcgtga cgttctacaa atgcctcaac ttctgagtga agcggaagtg cgcgaacacg
     2101 acattggcta accttaacac ctgtctcctc gatgatgtcg tcaatttcct gaattgtatt
     2161 ctccatggaa cccatgtaga taatgccgat ttcaagctcc gtttcctcac ggagaatcgg
     2221 tgcaggcaag agatcgcgtg cattgtcggt cttgcgcttc aatcgctcca ttagttcgcg
     2281 ataaacaact gggtcttcgg agtatacgcc gtcttcgtcg tgaccagtac cacggtagag
     2341 aattggatca agtccagatc ctggaagggt tcggtatggg attccatcac catctacatc
     2401 gcggtatcgg ccatagttct ggaccgcatc catctgctct tgtgtacgca aaaccttgcc
     2461 gcgatcaagg ggttcgtcag gatattcgaa acctgagcag acccagttgt tcatgcctaa
     2521 atcaagatcg gagaatccga atacgagtgt ttggaagcgt tccgcgtaat cgaaggcacg
     2581 ccatccgaat tcaaagcact cttctacagt tccaggaatc agaactatgt ggtcagtgtc
     2641 gccatgacta gcttcgcgga gtaggttaag atctccttgt tgggtccgag tagggagtcc
     2701 agtggaaggt cccacgcggc agacatccca gatgacgccc ggaatctcag cgaagtatgc
     2761 gagaccaatg aattcggaca tcagtgaaat cccggggcca gaggtacagg tcatacctct
     2821 tccaccggcc cagccagcgc cgataaccat gccagccgcg gccaactcat cttctgcttg
     2881 aaccactgca caggttgaca gatcatcttc cgtgtctcga agttcaggga gccactggat
     2941 gatgccttct gccatcgatg atgaaggcgt gattggatac caagatagca tgttgatgcc
     3001 accgtaaatt gctccgagag caacagattc gttcccatcg accaagaact tttgattatc
     3061 tttctcccgc tcttgtaaac ggtaaggttg gtcccaatct aggttgtcag atgcataggt
     3121 gcgcccttct tcgatggcac gcaggttcag ttccactgct gctgttttgc ccttaaactg
     3181 gccttcaaca gcgcgttcaa gcgcaccttg ttcgatgtgg agtaggtgct ggatgatacc
     3241 aacatagtac atgtttgcaa tcatcttagc tagtttcggg ttgatgccac gtgccatttt
     3301 tgtcataggc atgccgaaga ccagacagtc ttcacgatca acgggcattt tgacatcttc
     3361 gttgtaaatg ataatggttc caggttctac tgattcaatg tccttgaacc aagtgtcctt
     3421 gttcattatt acctgaatat gtgttcggtc tccaggtgcc tggtagcctg catctgaaac
     3481 gcggatgatg taccatgttg gcaaccccga gatattgctc gggaagaggt tctttccgct
     3541 gacaggaact cccatttcga acattgagtt cagtagaatg aggttcgcgg attgtgaacc
     3601 cgttccgttt gcagtagcga tgttcatcgt gaaatcgttg atgatataat ccatctgtgc
     3661 ctaatctcct tcgttgatgg cctgctgctt tcgcccgtcc ttaaccaccg cgcgatggtc
     3721 cggggggaag gagggcatga cttaggtttt cggacagaag tatgcttttt tttcgtcctc
     3781 aagaggatgt acgttcatcc gttgccgttt tgaatgactt gttcatcgga aggggtgatg
     3841 ccaacgccac aggcactcaa ggatgcatgg gatgaggctc ggtcgcagac cgagcgaggg
     3901 gagcctgagg atgctctcaa aacgatgaga agtgcttgga atacgcatgg aaaagatgct
     3961 gacgatcacc gtacctggac aattgttgcg gacgccgaag ctaagattgc aggcgagtca
     4021 acccgtccca aggattaccg caagtcaatc cagcactacg agaaggctct ggacaagggt
     4081 gcgggcaagg acgtacgtcg tcagatgaat aaggtccgtg cagatatgga tgagagaggt
     4141 attggcatgg gttcattccg tctttacgat gatggttctc caactgtcta tggtgtcttt
     4201 gcgctattcg tagttggtat gctgttactt gtctcgctcc gttatgtcga tggaggtctc
     4261 gatctcagcg atatattcgc ttcagatgac gatgactcaa atccaatttc tgttgggagc
     4321 actgctcaat tgagcatatc ttatgttcca gcagggatgt ctgaatcaaa tcgtgtgacg
     4381 gtcgctgtaa tgattgattt acactcagaa gatgcacctg ttcatgtgga taatttcgtg
     4441 aagttagcac agaatgggga ttatgataat acgattttcc atcgtatcat tgacaacttc
     4501 atgattcagg gcggcgattt tacaaacatg gatgggactg gtggtcatgc tgctgaattc
     4561 tacggttatt gcaatgggca accaagcgcg tcggcttgtt cttctgaaga tgcatacaca
     4621 attcctgatg aagcaaataa cggtcgcgtg catgacccat gcgtcctctc catggcgaag
     4681 acctctagtc ctaacactgg aggaagccaa ttcttcgtga ttccagagga tagcaatccg
     4741 actcatctcg atggggtgca tacggttttc gggaccgtta cctctggatg ttcctttgtt
     4801 acagcgattt cttcagttga cactggcagt aacgatcggc cagtttatga cgtccgcctt
     4861 gagtcagtga ccatctcgtg attccatctc atattcgatg ggtcagattg atgggcaact
     4921 gttcggtgca ttgtcacggt gaagcctgtg tctgacgaac atcctttcgt ggccttgcgg
     4981 gaatttgaga cctcttcagg ggctactgca acctatgctg ctctctctgc tcttgaggaa
     5041 tctggggttg ttgataatct cgaaaacctc ccttacagca ttcgaatttt acttgaagcc
     5101 gctctcagga agtgcgatgg tttcctcgtg acgaaggaag atgtcaaacg aatcgcaggt
     5161 tggtcgccta cacaatcgcc agcagagatt ccattcatgc ccagtcgggt aattctgcag
     5221 gattttactg gtgtacctgc agttgttgat atcgctgctt tgcgtgatgc gatggtcgaa
     5281 ctgggagggg atcctgtgaa ggtaaatccg caggtcccgg tagatcttgt gattgatcat
     5341 agcgttcagg tcgatgtctc gggcctattt ccggatgcgc gtgagcgtaa cctagagatc
     5401 gaatatcaac ggaacatgga acgctatcag ttcctgaagt ggggccagca atcgttggac
     5461 aacttccgtg cagtgcctcc cggccgtggt attgtccatc aggtgaatct cgaatggatt
     5521 gcaagtgtcg ctcgtgagga aagaggtgtt tggttgatgg attcgctagt tggaacggat
     5581 agtcatacaa cgatgatcaa tggtctaggc gttcttggtt ggggtgtggg gggtattgag
     5641 gctgaagctg tgatgcttgg tcaaccgatt tacatgctat taccagaggt tgttggtttt
     5701 gagttgacag gaacccttcg agcaggagtt acagccaccg atatgacact gcgcatcgtt
     5761 gagatgttac gtgaacatgg tgttgttgga aagttcgtgg agttccatgg aatgggcctt
     5821 tctaacctct ctttacctga ccgtgcaaca attgctaaca tg
//
LOCUS       DUKB01000222            3762 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_189000, whole genome shotgun sequence.
ACCESSION   DUKB01000222 DUKB01000000
VERSION     DUKB01000222.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3762)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3762)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_189000"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1657)
                     /locus_tag="HA345_07335"
     CDS             complement(<1..1657)
                     /locus_tag="HA345_07335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85207.1"
                     /translation="MTRHRAGSRAVLLAFLMMLSTTLCVFSASATEAEIALDPWAIVD
                     SSKDVRNTQIATAGEDLVMLAYIEDGNRLEVQLLSASTTGLPNILIDETTGSIQSLAI
                     ATEGCESTTPCRLHVSWTTKDAGQNEGLHYSLQSIDAVNKTISHLSQNQQIVNRDNLR
                     DVAMAIDSRGGLHLAWTDNYDPSGILHGTDQIRYTMLQIMQGSQSNVLPMYADALISD
                     TLLTTNYGSKGHASIGIDSDDHVAIVWDDVRGSSVEMLFVMPNPTNGYMNGEWSDICT
                     VLYGGTYDQGTMPSLKEVAEDNGILLMETIYGLHDTIPTQANQNNCAGKNTNQNSRST
                     PLSASDDSGGIRKLQDGIYNGQTPSPWWKSERDDWGPGTTWACMSWRDANGNTGSQAN
                     PPTNSDHRWNEVATRIVVPFGVEGPYEGDPIQNSDRNSIAEAHRRCLDGNTMVAPVYA
                     YPVNNPSDVLDSMIDLAWCPDSGVNTQSRNCPGTSTTNRNMSSDVISWRQTNAALTDQ
                     WNALSNLMNTGSRDIWMTALDPWDFLDNSATFVNGTSATIFDSN"
     gene            1771..2118
                     /locus_tag="HA345_07340"
     CDS             1771..2118
                     /locus_tag="HA345_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85208.1"
                     /translation="MAQPEDDGFDAVVDNLMEFVGDEDVQKGTAITVILFLVACAIYG
                     IYLFVMAYYMEIMGVLILGLIIYYYTRPKISYCADCGNILGRGEPSGPCSRCQCNRWT
                     QRDPGVGMTFKHR"
     gene            complement(2171..3673)
                     /locus_tag="HA345_07345"
     CDS             complement(2171..3673)
                     /locus_tag="HA345_07345"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine dehydrogenase subunit 2"
                     /protein_id="HIH85209.1"
                     /translation="MSDIFAFKGSEDAGYAQPAPIADAEAAKERIPTSLRRAERAAWP
                     TASEPELVRHYTWLSQRNFGIDTGFYPLGSCTMKHNPRVNERIVQLAGMNDVHPLAPA
                     HHLQGLMAIFYEMQEMLGHCAGMDEVTLQPVAGAQGEFTAIRCIQEYHRSIGQPHRDK
                     VIVPDSAHGTNPASAAMCGYSIIEIPSGEDGRLDLDALRAVVGDDTAAMMITNPSTLG
                     VFEPDIAEAAQIVHDAGGQMYYDGANFNAIIGRTNPGLMGFDAVHYNLHKTFSQPHGG
                     GGPGSGPIGVKTHLAEFLPSPIVGRRPSEEGEIGAGDGWWYTWETPENSIGKVHQWHG
                     NAGAVVRSWAFYRRYGRDLKTMSEHAVLNANYLRYRIMNPSPEVREKIHAMPAEGCPA
                     DVVKHEFTLSMTPLVDAIGVNGKDVAKRLLDYGYMSPTLYFPMIVPECLMIEPTETES
                     KEALDKFADDFHAVLSEDAEILTTAPHTTDVKRVDEVWAARNLILRYPKE"
BASE COUNT          856 a          906 c          961 g         1039 t
ORIGIN      
        1 tgttgctgtc gaagattgta gcagatgtgc cattcacaaa ggttgcagaa ttatccagga
       61 agtcccatgg atcaagagca gtcatccaga tgtctcttga tccggtgttc atgaggttag
      121 acaaagcatt ccattggtca gttagtgctg cattggtttg gcgccatgaa attacatcgc
      181 tcgacatgtt tcggttagtc gtggatgtcc ctgggcaatt acgtgactgt gtattcacgc
      241 cgctatcagg acaccatgcg aggtcaatca ttgagtcaag gacatcactc gggttgttta
      301 ctggataagc gtagacaggt gcaaccattg tattgccatc gaggcatctg cgatgcgctt
      361 ctgcgatact gttacgatca ctgttctgaa ttgggtcccc ttcgtaaggg ccttccacgc
      421 cgaaggggac aacgattctt gtagcaactt cgttccaacg atgatcgctg ttagttggag
      481 ggtttgcctg acttcctgta tttccgttgg catctcgcca cgacatgcaa gcccatgtgg
      541 ttccaggtcc ccaatcatcc cgttcgcttt tccaccatgg agacggagtt tggccattgt
      601 aaataccatc ctggagtttg cgaatacctc ctgagtcatc gcttgccgaa aggggtgtag
      661 agcgactgtt ctgattcgta tttttaccag cacaattgtt ctggtttgct tgcgtcggaa
      721 tcgtgtcatg gaggccgtaa atggtctcca tcagtagtat tccattgtcc tcggctactt
      781 ctttgagcga aggcatggtt ccttggtcgt aagtcccacc atagaggact gtgcaaatat
      841 cgctccattc accgttcatg tagccgtttg taggattggg catgacgaac aacatctcaa
      901 cacttgatcc acgaacatca tcccaaacga tggcaacatg gtcatctgag tcgataccga
      961 ttgaggcatg tccctttgag ccataattgg tagttagcag cgtgtccgat attagggcgt
     1021 ctgcatacat tggtaacacg tttgattggc ttccttgcat tatctggagc atcgtatatc
     1081 ggatttggtc cgttccatga aggatcccag atgggtcata attgtcggtc caagctaggt
     1141 ggagtccgcc tctggaatcg attgccatgg cgacgtctcg aagattatcg cggttgacta
     1201 tctgctgatt ttgacttagg tgcgagattg ttttgttgac agcgtcaatc gattgcaagg
     1261 agtagtgcaa tccttcgttc tggccagcat cctttgttgt ccatgacacg tggagcctgc
     1321 atggagtcgt gctttcacag ccctctgtcg cgatggccaa tgactggatt gaaccagttg
     1381 tttcatcgat gaggatattc gggagcccag tcgtagatgc agagagaagt tggacctcga
     1441 gacgatttcc gtcttcgatg taggctagca ttacgaggtc ctcacctgct gttgcaatct
     1501 gggtgttgcg cacatccttc gatgaatcta cgatggccca tgggtcgaga gcaatctctg
     1561 cttccgtagc gctggctgag aagacgcaca gagtggtaga cagcatcatc aagaaagcca
     1621 gcaggaccgc acgagaacct gcgcgatgcc tagtcatgag atgggaaatg cttcgttcct
     1681 tcttcatact gtgtgttcca tccatcatct atctagggga ttcaaagatt aaccgaaaga
     1741 tacagatgca tcctccccag tatatcttcg atggcccagc ctgaagatga cgggttcgat
     1801 gctgtagttg acaacttgat ggaatttgtt ggagacgaag atgtgcagaa gggaaccgca
     1861 attaccgtaa tcctctttct tgttgcatgt gccatttatg gaatctattt gtttgtaatg
     1921 gcatattaca tggaaatcat gggtgttcta attcttggat taatcatcta ctattacacc
     1981 cggccaaaaa tttcttactg cgccgactgc ggaaatattc tcggaagagg cgagccatca
     2041 ggaccgtgta gccgctgtca gtgtaatcgt tggacacaaa gagatcctgg tgttggaatg
     2101 actttcaaac atcgttaatt tccctcatca taaagtcggt ttcttgtgtc taatttggct
     2161 gttatggaaa tcattccttc ggatatcgaa ggatcagatt gcgtgccgcc catacctcat
     2221 cgactcgttt tacatcggta gtatgaggtg cagtggtcag aatctcagca tcttcactga
     2281 gcacagcatg aaagtcatct gcgaacttat ccaatgcctc ctttgattct gtctcggtag
     2341 gttcaatcat gaggcattcg ggtacaatca ttgggaagta aagggtcggc gacatgtatc
     2401 cgtagtcaag taatcgtttg gctacatcct taccgtttac tccgatggca tcgacaagcg
     2461 gagtcattga cagcgtgaac tcatgcttta cgacatcagc cggacacccc tcagccggca
     2521 tcgcatggat tttctcacgt acctccggac tcggattcat gatgcgataa cgcaggtagt
     2581 ttgcattcag aacggcgtgt tcagacatcg ttttcaggtc gcgaccgtag cgccggtaaa
     2641 atgcccatga tcggacaaca gctcctgcgt ttccatgcca ttggtggact tttccgattg
     2701 aattctcggg agtttcccaa gtgtaccacc atccatcgcc agcacctatc tctccttctt
     2761 cggaaggccg tcggcctaca attggggaag gaaggaattc cgcgagatgt gtctttacac
     2821 caataggtcc actgccaggt ccgccgcctc cgtgaggttg actgaatgtt ttgtgcaggt
     2881 tgtaatggac tgcatcgaag cccatgagtc cggggtttgt tcgtccgata atcgcgttaa
     2941 agtttgcacc atcgtagtac atctgacctc cagcatcatg gacgatttgt gcggcttcag
     3001 cgatatctgg ctcaaagact cctagtgtgc ttgggttggt aatcatcatt gcagcggtat
     3061 cgtcgcctac tacggcacgg agtgcatcaa gatcgaggcg cccatcctcg cccgatggga
     3121 tttcaatgat tgagtaccca cacattgcgg cgctggcagg attcgttccg tgggcagaat
     3181 ctggaacaat gaccttgtct cgatgtggct ggccgatgct acgatgatat tcttggatac
     3241 agcggattgc ggtgaactca ccttgagcac ctgctacggg ttggagagta acctcatcca
     3301 ttcctgcgca atgtccgagc atctcttgca tttcatagaa tattgccatc aatccttgca
     3361 gatgatgagc tggagcgagg gggtgtacat cattcatgcc ggcgagttga acaatccgtt
     3421 cattgacacg agggttgtgc ttcatggtgc aggaaccgag agggtagaat ccggtatcga
     3481 ttccaaagtt cctctgtgag agccaagtgt agtgccggac taattcaggc tcgctggccg
     3541 taggccaagc ggcacgttcc gctctgcgaa gagatgtagg aatccgttct ttggcggctt
     3601 ctgcatcagc aatcggtgct ggctgtgcgt agccagcatc ttctgaacct ttgaaggcaa
     3661 agatatcact cattcaatca cctcctcagc ccatccagca acaccggcta tgagtgcggt
     3721 gacatcccca tctgttgtct gatcagtgca ggatacgagt ag
//
LOCUS       DUKB01000223            3250 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_220116, whole genome shotgun sequence.
ACCESSION   DUKB01000223 DUKB01000000
VERSION     DUKB01000223.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_220116"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..920)
                     /locus_tag="HA345_07350"
     CDS             complement(<1..920)
                     /locus_tag="HA345_07350"
                     /inference="COORDINATES: protein motif:HMM:TIGR03790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03790 family protein"
                     /protein_id="HIH85210.1"
                     /translation="MRVTSLLILALVAIHPWTLCVQPISTSDSLNEAGYAHSSSDLST
                     IAVPEGFHHTTWANYSDVAVLINNRSMDSVLIGEAFAAARGIPEERIFRLINESTPTG
                     ETINAGQFDEFFADPVREMILNRSLGGEINYIVTTKGIPLRVNGGTNARASFDSELAL
                     IDSAQYSPAIHANYWTEHAYGPWSDTDGDDYSSYSETPVPIFNRIDQGFYIVTRLTGY
                     DVSTALGLIDLANESYGSRGTTVLDLATNRNSSGYQFWNDALYRADEMVNGTLGFPTQ
                     FNQNSTYLTNVDDVIQYAAWGSNHGSWEDK"
     gene            1028..1666
                     /locus_tag="HA345_07355"
     CDS             1028..1666
                     /locus_tag="HA345_07355"
                     /inference="COORDINATES: protein motif:HMM:NF013798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85211.1"
                     /translation="MDTLIVRDCRHGQLRILIGDVLRVECDILVTGANNRLSGREGID
                     AKIHQAAGEELREACTQIARTQRTQNLQPCSVGSAVTTSPFNLPVQHLIHVVGPDCRR
                     PNQDQNRRDLLENAYNSMFAEIAAAENKGTVALAPLSMGVFSYPHREGARKTMEIILG
                     VLDGEEDPGIDRILLVTNDNNFVNNMKTVYRETEDQFPGTDMTRAFRRGLIQ"
     gene            complement(1673..1744)
                     /locus_tag="HA345_07360"
     tRNA            complement(1673..1744)
                     /locus_tag="HA345_07360"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1709..1711),aa:Gly,seq:ccc)
     gene            complement(1779..2468)
                     /locus_tag="HA345_07365"
     CDS             complement(1779..2468)
                     /locus_tag="HA345_07365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85212.1"
                     /translation="MLPSDPLPPGVSAWLGAPAEVGMSGDASGIPATIDTFHLAVERA
                     VHRLSHQGSIRLLLFGIDPGPRPGLAWIGDGIILGKEQFEEVDGVVDRVIDIARAIDH
                     DDLVIRVGNGSKTLANRIINTCMARSLNVERVDEARTSVGVPRHAHSSAALRIAHLQG
                     HAVKEKQRVRPTDGEIRDIQRRSRKVSGGRATIPSDLARAVAMGRLTIRDAIEDHIGN
                     GAESFLFSTER"
     gene            2700..>3250
                     /locus_tag="HA345_07370"
     CDS             2700..>3250
                     /locus_tag="HA345_07370"
                     /inference="COORDINATES: protein motif:HMM:NF013987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85213.1"
                     /translation="MGAGSQYERELRKVLAGSPDGVRAVIRSCSEEERALARLVIERP
                     FLVVRAAGSGIEGSGDLLALRGDICFPIEVKTSKHSTLYLNGRLRTQYEALEEIGQRC
                     GLMPLYAYRLKGTRGDSWRIFRIDTGRLEGRLSIIARRIPVCPLTSNGRPHLIWEEGL
                     PLHRFLALVCRPRESNKNGLAGL"
BASE COUNT          893 a          819 c          769 g          769 t
ORIGIN      
        1 tgcttatcct cccaagaacc atggttactc ccccatgcag catattggat cacatcatcg
       61 acattcgtca gataggttga gttctgattg aactgggtag gaaaaccaag ggtaccattg
      121 accatttcat cagcacgata caatgcatca ttccagaact gatatccaga agaatttcga
      181 tttgtagcta aatcgagaac agtggtacct ctagaaccgt atgactcgtt agcaagatca
      241 atgaggccta gtgcagtact aacatcatat ccagtcaatc tagtaacaat atagaatccc
      301 tgatcaatcc gattgaatat tggcacaggt gtctcactat aactggaata atcatctcca
      361 tcagtgtccg accaagggcc atacgcatgc tcggtccagt aattcgcatg aatcgccggg
      421 gaatactgcg cagaatcgat tagagctagt tctgaatcaa atgatgcacg tgcattagtg
      481 cctccattaa cccgaagtgg aatacctttt gtggtgacga tgtaattgat ttcgccacca
      541 agtgaccgat tcagtatcat ctctctaact ggatcagcaa agaactcgtc gaactgccct
      601 gcattgattg tctcaccggt aggggtgctt tcattgatta gacgaaagat gcgttcctca
      661 ggaataccac gagccgcagc gaaagcttcg cctatcagga cactatccat acttctgtta
      721 ttgatgagaa ctgcaacatc ggaataattg gcccacgtcg tatgatggaa accctctgga
      781 actgcgattg tagagagatc cgatgaggag tgagcatatc cagcctcatt caaggagtcc
      841 gaggtagata ttggttgaac acatagtgtc caaggatgaa tggctacgag ggccaaaatc
      901 agtagacttg tgaccctcat actggactcc aaatcgattc aagaattgaa ccaatcgggc
      961 aatggttccc ctgcaaggaa atattcgtga aaggatatat aacaaaattc ctgttggctg
     1021 gcacgtcatg gacacgctca tcgttagaga ttgtcgccac ggccaactcc gtatcctgat
     1081 tggagatgtc ctccgtgtag agtgtgatat cttggtcact ggagcaaaca atcggctttc
     1141 tggtcgtgag ggaatcgatg cgaaaatcca ccaagccgca ggtgaggaac ttcgcgaagc
     1201 ttgcactcaa atcgctcgga cccagcgcac tcaaaacctc cagccttgct ctgtcggttc
     1261 cgcggtgaca acatctccat tcaacctccc agtgcaacac ttgattcatg ttgttggccc
     1321 tgactgtcgc cgtccaaacc aagatcagaa tcgtcgagat ctccttgaaa atgcatacaa
     1381 ctctatgttt gcagagattg ctgcggctga aaacaaggga actgttgcct tagccccgct
     1441 atccatgggt gttttctcct accctcatcg tgaaggggca cgcaagacaa tggagattat
     1501 cctaggtgta cttgatggcg aagaagatcc tggaattgac aggattctgc ttgtcactaa
     1561 tgacaataac ttcgtaaaca acatgaagac cgtataccgt gaaacagaag accagtttcc
     1621 aggcaccgac atgacccgcg cattccgacg cgggcttatc cagtgaattt cctgcacaag
     1681 ccgggagtcg aacccgggtg acgagattgg gaacctcgta tcataaccac tagatcactt
     1741 gtgcgggaaa ccatgtcagg cattcttccc acttgacctc atcgctcagt agaaaacaag
     1801 aatgattcgg ctccattacc aatgtgatct tcaatcgcat cgcgtatagt aaggcggccc
     1861 atcgccacag cccgtgcgag atctgaaggt atcgtcgctc gaccaccaga aaccttgcgt
     1921 gaacgacgtt gaatgtccct aatttcacca tccgttggtc gaactctctg cttttccttg
     1981 actgcatgac cctggagatg ggcaatccga agtgcggcag aggaatgggc atgcctaggc
     2041 acgcctactg aggtccgtgc ctcatccact ctctcaacat tcaatgaacg ggccatacaa
     2101 gtgttgatga ttcgatttgc gagtgtcttt gaaccgttac caacacgaat cacaagatca
     2161 tcatggtcga tcgctctagc aatatcaatc actcgatcca ctacaccatc cacctcttcg
     2221 aactgttctt ttccgaggat gatgccgtca ccaatccatg cgagcccggg acgtggtcct
     2281 ggatcaattc cgaacaaaag taaacggata gaaccttgat ggctcaatcg atgtacagca
     2341 cgctcaaccg caagatggaa tgtatcgata gtcgcaggta tacctgaagc atcaccactc
     2401 attccaacct cagcaggagc ccccaaccaa gctgaaacac caggaggaag agggtctgaa
     2461 gggagcaatt gaatgcaacg tacaccacga cgtttgagtt ccgcaagaac gcggtacgcc
     2521 agtctgaaat cgcccgttct tacggcaatc gaacccacgt agaatgaaat tatacacgga
     2581 aggatttgaa gaatcgggct tctcgacccc tccggcggat gttttgagag attggaaacg
     2641 tgtctgatag tgccaataaa caccgaagag attaggttag caggtcgatg cggcaaagga
     2701 tgggtgcagg ttcacaatac gaacgagaac tccgcaaggt cctcgctgga tccccggatg
     2761 gtgttcgagc tgtaattcga tcctgtagcg aagaagaaag agcattggct cgcctcgtga
     2821 tagagcgccc cttcctcgtg gtgagagctg ctggaagtgg aattgaagga agtggggatt
     2881 tgcttgctct caggggtgac atatgttttc caattgaggt caaaactagc aaacactcta
     2941 cattatacct caatggacga ctccgaacac aatacgaagc gttagaggaa atcggtcaac
     3001 gctgcgggct tatgccactc tacgcctaca ggctgaaggg tactcgcgga gattcttggc
     3061 gtatcttcag aattgataca gggcggttag aaggaagatt atccatcatc gcacgcagaa
     3121 tcccagtatg tccgctcacc tcaaacggtc gaccacacct aatttgggaa gaaggtcttc
     3181 ctttgcatcg tttcctcgcc ctcgtctgtc gaccacgtga atccaacaag aatgggctgg
     3241 cagggttaca
//
LOCUS       DUKB01000224           15768 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_88975, whole genome shotgun sequence.
ACCESSION   DUKB01000224 DUKB01000000
VERSION     DUKB01000224.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 15768)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 15768)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15768
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_88975"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..1327)
                     /locus_tag="HA345_07375"
     CDS             complement(<1..1327)
                     /locus_tag="HA345_07375"
                     /inference="COORDINATES: protein motif:HMM:NF024627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HIH85214.1"
                     /translation="MTSQRTHSISLVLIMLISSLALLIGPVDQVSAATGAGTITSDEV
                     WSGTHSVTGDIVIAPGVKVTIQPGTNINLVNGSMITVRGNLCAGDIACGANGMASNAS
                     RIKFQWANPGDTSAIGDCANDPNQNPYLADDYYNRDPSCGEGILLKDSIDVGQTKFNH
                     VSIVDAFGIPAKVASVNNDFRTASLILDGASPTLEALKFQGVNTSSVLVHNLATPTFI
                     GGEFVNGDDETEIAGNGVQIYGAGTTFTPTTMTSPVFTGGSKGCGEQDGGRHVLWAQD
                     SFISIQNSVVSSGDYGFRSEASSGTISSATIGVTCNAIDVNGAKIVGSQKRTLTVTNS
                     DLNPAEGAGFTVADGAKVVFSNSKIEGSSEGSGIFVKSSEAHIHGNTIGPIGGWNGIW
                     QFGSFDTIIEGNTIQNTAREAIIVGDYHEGESGFGGVFSSPSRSHIANNT"
     gene            complement(1486..2682)
                     /locus_tag="HA345_07380"
     CDS             complement(1486..2682)
                     /locus_tag="HA345_07380"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH85215.1"
                     /translation="MRLDGRRVELLPEPDEPGMMTVIDREAPGYEPYISPVESPLSVP
                     QGSPFQTWRSGIMVVVLSILVLSYPLVESILFGPLIPTSEWAFEDTELRNLQDIGLDG
                     SGIHVCMVDTGVDRSHPAFIDAKFGGFLDLVNPENRDFIDHGIDYHGTMMAGLLIAED
                     AFQGGAPGVTLSVAAALGPTGYSIDDGAVGQAIDWCWRVQKADIISLSLGGEADPSMA
                     ISGPTVSAVEDALASGAYIVAAAGNRGENSSDVSIPGAMEGVISVAASTRTGDIWVDG
                     SRGSAVFEGDVRSDPNLKPEIASPGQDIISTNDPELGVPYASSSGSSVSTVFVTAALA
                     LILEAHGDKLQIIGEEQSVEDARNLLKTALMESANSDYEGHDDRLGYGVLDALEWERS
                     VAESLS"
     gene            complement(2726..12364)
                     /locus_tag="HA345_07385"
     CDS             complement(2726..12364)
                     /locus_tag="HA345_07385"
                     /inference="COORDINATES: protein
                     motif:HMM:NF014565.1,HMM:NF022100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85216.1"
                     /translation="MNDEENLTAAESPGIYGFLGPVLMIAMIAIAFAGASVNWIDMAD
                     TANLTDIAMPLGVLLIAGVAGISARPMLSSTPLNGSRATAVVILGGIAALFGADAAGH
                     TLLGVIGAMTFLIVHAFERNDRMEEANLSVGIIAGAMMALTLASSATLTAGGNANATY
                     SLLDVNRSYAMSIFMSFWLLSIALSITMVTALRGRTEFIAPGVGRWFRNLPDTLPNIV
                     PITFGVWALLHVISMLSMRQLADTDVYNLGIYLGNWWAIAGGIFMMIVAYLRSEGWVV
                     ASTIIAANFVLYTLTMLQDISFIDTLLANNEGALDTFQVWFTDTRGVLMWFFIWFFVN
                     FGIVSMGNRGRFGSVAYRREPGMASKWFSENGYTLVVMSALIFALFIRIVWNILPAMN
                     ANGTGLWDMTGGSDPWYMKRAVDYVVAHHSHFIIDADRAYPLGGVNPRPPLFTWSLAL
                     GGLAIHWITGIDLEQAVWFSVSGMPAIFGALIVLPVAASARTLHSKKSGMLAAWLIAL
                     MPSHVGHSTFGLADHDAFVILGISVAFYFWIRTVQSLDDRKLIDEAGFSPSLLLKAYS
                     AAWEKHKQTMVLSSMAGLSFATTALGWKGFVYGPGIVFLIFAMQIFLNMFRRKDSMLL
                     TMAAVNMMFLTLILTIPVYGHNQLHLLFEASGLEPMFYIAGITFGLGWTASAFRDKPW
                     LLVLGTTAVLGGTFVGILAFLQFGLNVYNGWDILFTGGYYFSANKIFGTIAEAQAPDR
                     ATLFASYGPIVMLLGVGFAVRGIWLGLRRNDRSQLLIGGWVVIAAYMAWSAGRFIFNA
                     TPAMAISGAIAMVILWDFVGASNFVRDWRRKGTSTPRARVRSVASASRSNPMVPALFL
                     VFLLVASQHMTYGFDSAIPRGSEEKADVDQAFHNIAPDLLRTSLPLPWLPDIPSILNS
                     AYPEPGTQAFDQYCQGCRYMGTFGPGFNGGDWNRAYDWLAAQDADLSFSEKPAFVSWW
                     DYGFQALAQGQHPSVSDNFQSGIPATGNMLLADGQEDLVSLFVVNLALGDIVHSKNGQ
                     FTSGFRNALSQHMTDAQIDEFYSVITLGGDEEFLLDRTMRVVKSSIPGSPSESPVYLL
                     TGHRLDASGAPSSDLIWEVIDKDGEVVSSPGATEVGANNRFNMTIGTSDVNEETTHYI
                     IGDQWYTEDIMTGLSDVSTSLHRENARLALGRQMMHAFMDMDAMVDLYHRITTGVEYT
                     VPSYDGGPGESITRNHDIRYFAVDSRLYPVGGLYNAQAGYHSYNPTGIFYAPTTLSGL
                     DPSIYIQSIYQTQRGEGPVIERTQQAYEEEYLLDITRQQSGATVDLIELVDINYAQQP
                     EFFETMIARTYVGYGTSTLGITAESAQPGQLFGGARAQGSPGSVLQYARPMPGAMMNH
                     FVLANWYEGENTEDQENIGYANAGTKVLKYYSGATLTGTVELGDIGVVPNARILIERD
                     AFSGEEVASANGEVIDRDPRNWWVPIGTVDADENGDFEFTVPAGRIRVTAMTGVVDTD
                     TDRDLIVSARGNQNSWAQWDADLYSPQAEGDRSINPVTGILGNVSGQTWLGETFVNVS
                     AIDGHSNGEAVLDVSISVDASGVTGQILFTGHNDFEGDAVPELDVTITSIWDEVDSDG
                     YTLTISSGTVTGEDMQFSGEGEATFTGDGTVIATGTMSVVDFTGNYTRTILNNHSFTG
                     NGLFEGRGSILGTVYHENGSEVTNPVSCENGTVPIGEFVCLVGDSDPVEHLILGKVTA
                     DGRFTANGSALFTTEMSRRSFSGTGTFQIDSSDDSLDHYGVFNGTGTFAGTGTFSGDM
                     VKPGSFHLVDAIRGDYHVTVHFLNGEESMLPMPLVVQSTPSSGVVLTLPAGHLSGELV
                     LENGTAVEGRVHLVEMNGSSQDSLGDCEELHYAPCWVDADENGTFSFGPVTTGNYTAL
                     VDGDMDGFSEIEQTFTVGMDTPTNITLSNPLPPTWDVQFTLVQDGEAVTLGENDSIEF
                     ENAYLDGLLPIEANYNAQTGEYNIELSPGVWIVNHDLNESSQFFAEFDLTDSDEENRL
                     IVTQFEYLPSTVVTGTVFVDNNMDKPEAGEDLRAVGSGIEITARWGSNEVNALTNSSG
                     DFSMLLPLGAEVNFTFVTVATQLTLSEKHTISENMHLNMTAASSLLIGGSVDMNRVGN
                     QYDIGIVDFRPITVVATSDDHSGDFVFEVDPDGRFSGKIVPGNWTLTVLDDRLNAEAL
                     TVDHQGDNESYDLMTYPENITVEVRLFTDHSMDGNESNGTMRTLDFQLVPLAGSTHGV
                     LVNVSADGPEWTGEGIAVISVEAGAYNLLIDPQNASDPANASAWNTVFFGDAPSVVYG
                     LSNGTEVLSAKLAPEWLAHINLTNTSGGQVAQRIVSFISADGELPDFIRYVDEFGLYN
                     GYIPEGEWIVSIDPYIIGADPMAIYRTLVTVNESTAPVQMDIQTVQSAHYVLNLSDAS
                     NDQALSGYVLTATSGDGLGDVQLSSTDEDGLVDVHLYPGNWSVSINRTDSQTRWVVES
                     FSIGELTSNNGSEEIDVEADRWLQIGGNLFWDLDNDDQYDATEGVSDVNVTLTSNQTG
                     AVWDAVSNQDGTWSLFVPAQMNFTVTFDKAGFAADDQYFVIDTIPVSTDHEMDAGEVQ
                     VSGIVDILPSSRWDEIAADTEIILYPSIGFERAAVTPDKVMENGIWTGEWSATIEPGD
                     WVVYVTYDAGQGSLSESQVGVAALDASISDGGSVNITLENAGMALIQTKWFDFDGLEH
                     TLTDTTVANAPMVSVPSISFNMISKSAGWNLTADSNGELNLLLPAGSVFIESEFHTTE
                     RGRDMEYSAGQGITIGESQESPDTMLEFTRRSIRTVNVTVASVTGVAEELDGASDVLF
                     EESGAEYTPVTFTYDAVFEGTVAVETYTVIGDVSGGDVGVWTVQFRNESQSDDSASDA
                     WLNELNLTLGLDDDMSQSITVRLTAPNQSAARHYDLGQELTVRFQASDGSVFNERTTV
                     RIPQTYAIDFEDGSIKTEYGVEPGKTTMLQFVIGNDGNGDDTVDVNITSMAPESWTVL
                     SSSSTSIGAGSSQMHTLDVSVPLNESAGSYDLVVVLTSEDGTVSSTETMSLRVARPIL
                     TFFEDWSSEPSQPLQGTMHNYSVTIFNTGLVQANDAVIELVRLSGTPGAEGTTPMEDT
                     RLIDVASIPAGENMTFTFMVDYTDDPVGTSPWFEVSVNTTNLVLENEPEVLYIQETLR
                     AQGVEETSNWLPLVVIVLVGFVLYGGTKIRGGRRPF"
     gene            complement(12486..13751)
                     /gene="purD"
                     /locus_tag="HA345_07390"
     CDS             complement(12486..13751)
                     /gene="purD"
                     /locus_tag="HA345_07390"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020105138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HIH85217.1"
                     /translation="MSDAVVLVVGGGGREHALVLGLIESLSVGSVHVAPGNAGTAMVA
                     TNHAVSTSDIDGIIGLAKTIDAELVVVGPEGPLVAGLSDCLREEGIPSFGPHAEGARL
                     EGSKEYAKQVMLSLGVPTAAVIRVEAHDAIDDALDSFSSPWVVKRDVLAGGKGVTVTE
                     DRNIAHSTISDAIDTDGFVLLEEFMAGEEASMLVLMDESGYVCLPASQDHKRVGEGDT
                     GPNTGGMGAYAPAPVVTDSVKMRAIEEIVEPMHAHLSTQKIPYRGCLYVGLMIDSEGT
                     PRVVEFNVRFGDPETQVTIPLIATDLNLLLGACANGSIADIDVKFHDAATMTVVLASE
                     GYPSTANTGRSLRGSDARIEEGALRGFIHHAGTRQNGAEIVSSGGRVCSATGIAPTLN
                     GAASIAYRLMESLELEGSHHRRDIGYRAL"
     gene            complement(13792..14460)
                     /locus_tag="HA345_07395"
     CDS             complement(13792..14460)
                     /locus_tag="HA345_07395"
                     /inference="COORDINATES: protein motif:HMM:NF013981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-archaeol synthase"
                     /protein_id="HIH85218.1"
                     /translation="MIPEGLFGSIDPLGVLALLLLYGPAYLANTGAMIFGKWLPELTG
                     APIWRIDGGRNWKDGFRLLGDGKSWNGLLGGPLLAGLLAVLATILWSGNGVDSKPFYD
                     PMMGFGHVDPWFGFLGLYGSAFFIGYVLGFGSLIGDSVGSFFKRRRGLKREGDVSSKA
                     PLLDTLPFAIICFIFGLVLFPNQLYGSWQLIPSMVWLLILTPVIHRSVNVLGYKLGLK
                     SVPY"
     gene            complement(14502..15260)
                     /locus_tag="HA345_07400"
     CDS             complement(14502..15260)
                     /locus_tag="HA345_07400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85219.1"
                     /translation="MKNTLIAILLFTMMLSLSVAGCLGGTSPEASDGTEIELGEPLDD
                     WPTYHVASASNLPTCPGANDANLGKLYYVEDVTEFQACTSSGWSTIDMGSSGITLNQP
                     PRITAKITALDDDTHNFTTDWYYVAMAYWSAIDPEGETVTVGIDADRDGVVDLSLNTA
                     EGFSIVEIDWNGSMQVERLELEGERFLHLYRIFDVIAEDASGVKSTISVISPAMQHEI
                     LRDLYDSDDVNENWFSELFFDVSQADIDWINAAP"
     gene            15343..>15768
                     /locus_tag="HA345_07405"
     CDS             15343..>15768
                     /locus_tag="HA345_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85220.1"
                     /translation="MRTLRARATSISFLLLMLLCTPLIGTISATEPPDGGQSLTITGD
                     VTWDQDDDFDGTVDIANGASLTITANLDVANGSRIIVHPGGILSISNGSLNAEWTDTD
                     YSWMRNSDEGHRSRIMIETAGRQGSFDVILTSAKNSYFNG"
BASE COUNT         4365 a         4115 c         3622 g         3666 t
ORIGIN      
        1 gggtgttatt cgcgatatgt gagcgcgagg gggatgaaaa tactccacca aagccggatt
       61 caccttcgtg gtaatctccg acgataattg cttcacgggc tgtattctga atcgtgtttc
      121 cttcaatgat ggtatcaaat gaaccaaact gccagatgcc gttccaacca ccaattgggc
      181 caattgtgtt gccatggatg tgcgcttcgg aactcttgac gaagattcca gagccttccg
      241 aactaccttc aatcttagag tttgaaaaga cgacttttgc gccatcagca acagtaaatc
      301 ctgcaccttc tgcaggattc aaatcagaat tagttacagt aagagtgcgc ttttgactgc
      361 caacaatctt agcaccattc acatcgatag cattgcaagt aactccgatt gtagcactcg
      421 atatagtccc tgatgatgct tcagacctga agccataatc accggacgaa acgacagaat
      481 tctgaatcga aatgaaggaa tcctgagccc ataggacatg gcgccctccg tcttgctctc
      541 cacatccctt cgagccacca gtgaatacag ggctcgtcat agttgtggga gtgaatgtag
      601 tacctgcacc atagatttgg acgccgtttc cggcaatttc agtttcatca tcgccattga
      661 caaattcacc tcctatgaaa gtgggtgtgg caagattatg cacaaggaca gaagatgtgt
      721 tgacaccttg gaacttgaga gcttcaagtg taggactcgc tccatcaagg atcaaagatg
      781 ccgttctgaa atcgttgtta acagaggcca ccttggcagg tattccgaag gcatcgacga
      841 ttgacacgtg attgaacttc gtctggccaa cgtctatgct atccttcaga agaattccct
      901 ctccacagga tggatcacgg ttgtagtagt cgtcagccaa gtacggattc tgattgggat
      961 cattagcaca gtcgcctatc gctgaagtat cacctggatt tgcccattgg aacttgattc
     1021 tcgaagcatt cgaggccatg ccatttgcgc cacatgcgat gtcccccgca cagagattac
     1081 cacgaaccgt aatcattgaa ccatttacga gattgatgtt agtacccggc tgaattgtca
     1141 ccttcacacc tggggcgata acaatgtcac cagtaacgga atgagtaccc gaccaaacct
     1201 cgtcagaggt aatggtacca gctccagtgg ctgcactaac ctgatcgact ggaccaatta
     1261 ggagagcaag gctgctgatc aacataatca gaactagact gatgctgtgc gttcgctggg
     1321 aagtcatacc cccttgtcgt tctgagttct gtataaccgt attgctccca tgcacactgt
     1381 tttaggcata attagccctc ttaaaatatt attaattact aaaaatatca ttaaaagtat
     1441 catataattt taaaaatatt acctgaaagt accacataaa aggtatcagg ataacgattc
     1501 cgccactgaa cgttcccact ctaatgcatc cagaaccccg tatccaagac gatcatcatg
     1561 cccctcatag tctgaattag cggactccat tagagcagtt ttcaagagat tacgtgcatc
     1621 ttccacactt tgctcttcgc caattatttg caacttatcg ccatgtgctt caaggatgag
     1681 agcaagtgct gctgtcacaa agacagtaga gacagaacta ccgctactag acgcgtatgg
     1741 tacacctaat tcgggatcat ttgtggaaat gatatcctgc ccaggtgaag caatctccgg
     1801 tttaagattc ggatcagatc ttacatctcc ttcaaacact gctgaacctc tagatccatc
     1861 tacccagata tcacctgttc gagtgctagc agcaacagag attacaccct ccatggcacc
     1921 tggaattgaa acatcactag aattctctcc tcgattccca gcagctgcaa cgatgtaggc
     1981 accagaagca agtgcatcct ctaccgcaga tacggtaggg ccactaatcg ccattgatgg
     2041 gtcagcttcc cccccaagag ataagctgat gatatcggcc ttctgcaccc tccaacacca
     2101 atcaatagcc tgaccaactg caccgtcatc aatcgaatat ccagtaggtc caagagcggc
     2161 tgctaccgaa agtgtgaccc ctggagcgcc accttggaaa gcatcctctg cgatgagaag
     2221 tcctgccatc atggtcccat gataatcgat tccatgatca ataaaatctc tattttcagg
     2281 gttcacgaga tccagaaaac caccaaattt agcatcaatg aaagcaggat gggaacgatc
     2341 cacaccggta tccaccatgc acacgtggat tccactacca tccaacccta tgtcctgtaa
     2401 attcctcaat tcggtatctt cgaatgccca ctcagatgtg gggataagtg ggccaaaaag
     2461 gattgattcc accaaaggat aactgaggac tagaatggac aggacgacga ccatgatccc
     2521 tgaacgccac gtctgaaaag gtgaaccttg aggcacactt agtgggcttt ccacaggtga
     2581 aatatacggc tcgtaacccg gtgcttcccg atcgatgacc gtcatcatcc caggttcatc
     2641 tggctctgga aggagttcga ccctacgccc atcaagacgc atgggccgtt tccctccgcc
     2701 agagtacttg gatgcgcgtc cttactcaga acggccggcg gccaccacga atcttcgtgc
     2761 caccatagag cacgaatcca acaaggacaa tcaccacaag cggcaaccag tttgacgttt
     2821 cttcgacacc ctgtgcacgc agagtttctt ggatatacag aacctcaggc tcgttctcta
     2881 ggactagatt tgttgtattg actgatactt caaaccaagg ggaggtccca acagggtcat
     2941 cagtataatc caccatgaat gtgaaagtca tattttcacc agctggaatc gaggcaacat
     3001 caatcaaacg agtatcttcc atcggagttg taccttctgc tccaggcgtc ccactcagtc
     3061 gaacaagctc aatcactgca tcattagctt gaaccaatcc agtattgaat atcgtgacag
     3121 agtagttgtg catggtgcct tggagaggct ggcttggttc gcttgaccaa tcttcaaaga
     3181 atgtcaagat cggccgtgct actcgtagag acatcgtctc ggttgaagac acagtaccat
     3241 cttctgaagt caagacgaca acaagatcgt aggaaccagc agattcgttc aacggaacag
     3301 acacatcaag ggtgtgcatc tgagatgatc cagcaccaat agaggtggaa gatgaactca
     3361 agaccgtcca agattcaggt gccatcgatg taatattgac atcgacggta tcgtcgccat
     3421 tcccatcgtt accaatcaca aactggagca ttgtggtctt tccaggctca acgccatatt
     3481 ccgtcttaat cgatccatct tcgaagtcga ttgcgtaggt ttgcgggatg cgcacagtgg
     3541 ttcgctcgtt gaagaccgaa ccgtccgatg cctggaatct cactgtgagt tcctggccca
     3601 aatcatagtg acgtgctgca gactggtttg gagctgttag acgcaccgta atggattgac
     3661 tcatatcatc atcaaggccg agggtgaggt tcaattcatt cagccaagca tcagaggcag
     3721 aatcatcact ctgggattcg tttctgaact gaacggtcca cacgcctaca tctccgccag
     3781 atacatctcc aattacagta tatgtctcga cggctacggt tccttcgaat actgcatcat
     3841 aggtgaaagt cactggagtg tattctgcac cagactcctc aaacaaaaca tcactagccc
     3901 catcaagttc ctctgcaaca cccgtcactg atgcgactgt tacattgaca gtacggatag
     3961 aacggcgtgt gaattcaagc atagtgtcag gagactcttg agattcacca atcgtaatcc
     4021 cctgccctgc agagtattcc atatcacgac cacgttccgt cgtgtggaat tcactctcaa
     4081 taaagacaga acccgctggt agaagaagat tcaactcccc attggaatca gcagtaaggt
     4141 tccatccggc cgactttgaa atcatattga aactgattga tggtaccgaa accattggtg
     4201 catttgcaac tgtagtatcg gtgagagtat gctctaatcc atcgaaatcg aaccacttgg
     4261 tctgaatcaa cgccattcca gcattctcaa gagtgatatt caccgaacca ccgtcggaaa
     4321 tcgaagcatc gagtgcagcg actccaacct gtgattcaga gaggcttcct tgacccgcat
     4381 cataggtgac atagactacc caatcaccag gctctattgt tgccgaccat tcaccagtcc
     4441 agataccgtt ttccatgacc ttgtcagggg taaccgctgc acgctcaaac ccaatagaag
     4501 gatagagaat aatctcagta tctgctgcaa tctcgtccca acggcttgaa ggtaagatat
     4561 cgacgattcc actcacctgt acctcgcctg catccatctc atggtctgtg ctaactggta
     4621 tcgtgtcaat cacgaagtat tggtcatctg cagcgaaacc ggccttgtca aaggtgactg
     4681 tgaagttcat ctgtgctgga acgaagagcg accacgttcc atcctgatta ctcactgcgt
     4741 cccatactgc acctgtctga tttgatgtca gtgtgacatt aacgtcagat acaccttcag
     4801 tggcatcgta ctgatcatcg ttatcaagat cccagaacag attaccacct atctgcaacc
     4861 atcgatcggc ctcgacatct atctcctcgc tgccgttgtt actcgtcaac tcaccaatcg
     4921 agaaagattc cacgacccaa cgggtctggc tgtctgtacg gttaatcgat accgaccagt
     4981 tcccgggata aaggtggaca tctacaagcc catcctcatc tgtcgaggag agttggacat
     5041 caccgagccc gtcaccgctt gtggcagtaa ggacgtatcc tgaaagtgct tgatcattcg
     5101 aagcatcaga gaggttcaac acataatgtg cggactgaac ggtctggata tccatctgaa
     5161 ctggagcagt tgattcgtta accgtcacaa gggtacggta aatcgccatc ggatccgcac
     5221 ctataatgta tggatcaatg gaaacaatcc attcaccttc ggggatatag ccgttgtaga
     5281 ggccaaattc gtccacatag cgtatgaaat caggaagctc tccatctgca gagataaacg
     5341 acacaatccg ctgtgcaacc tggccgcctg aagtgttggt cagattgatg tgtgctagcc
     5401 attcaggagc aagtttagca gagagaacct ccgttccgtt gctaagacca tagacgacac
     5461 taggcgcatc tccaaagaat acggtattcc aagcacttgc gttcgcagga tccgatgcgt
     5521 tttgaggatc gatgagaagg ttgtacgctc cggcttcaac agagataact gcaatgcctt
     5581 caccagtcca ctccggacca tcggcactca cattgacgag gactccatga gtagaacctg
     5641 caagaggtac caactggaaa tctagtgtcc gcatggtacc atttgactcg tttccatcca
     5701 ttgagtgatc agtgaaaagg cgaacctcca ctgtgatgtt ctcgggataa gtcatgagat
     5761 cataggactc gttgtcacct tggtgatcta cagttaacgc ctcagcattg aggcggtcat
     5821 cgagtacagt caaggtccag ttacctggga caatcttgcc actaaagcga ccatctggat
     5881 caacttcaaa gacaaaatca ccggaatgat cgtcactcgt ggcaacaacc gtaatcggac
     5941 ggaagtccac tatgccaatg tcatactgat taccaacgcg attcatgtct actgagccgc
     6001 caataagtag gctggaggca gcggtcatat tgaggtgcat gttttcacta atcgtatgct
     6061 tctcagagag ggttaactga gttgcaactg tgacgaatgt aaagttcact tccgctccaa
     6121 gtggtagtag catactgaaa tcaccactcg agttagtgag tgcgttaact tcgttggaac
     6181 cccatcgcgc cgtgatctcg atgccagaac caactgcccg gaggtcttcg ccagcttcgg
     6241 gcttgtccat gttattgtct acgaagaccg tgcctgtgac caccgtacta ggtagatact
     6301 caaactgagt aacaatgagg cgattctcct catccgaatc agttagatcg aactcagcaa
     6361 agaactgact cgactcattt aggtcatgat tcacaatcca tacgccgggt gacagctcaa
     6421 tgttatactc gcccgtctga gcattgtaat tggcttcgat tggtagaaga ccgtccaagt
     6481 aagcgttctc aaactcaata ctatcatttt ccccaagcgt aactgcttca ccatcctgta
     6541 ctagggtgaa ctgaacatcc caagtaggag gcaatggatt ggataacgtg atgtttgttg
     6601 gtgtatccat accgactgtg aaggtctgct caatctcact gaacccatcc atgtcaccat
     6661 cgacgagtgc agtatagtta ccagtagtga ctggcccgaa ggagaaggtt ccgttctcat
     6721 ctgcatcaac ccaacaagga gcataatgca attcctcgca gtcacctagg ctatcctgag
     6781 atgaaccatt catctcaaca agatgcacgc gaccctcaac agccgtacca ttctcaagaa
     6841 cgagttcccc tgataggtgg cccgcaggaa gggtcaggac gactccagat gaaggcgtac
     6901 tttgtacgac taacggcatc ggaagcatgg attcctctcc attcaggaag tgaacagtca
     6961 cgtggtagtc accccgaatc gcatccacaa gatggaaact tccaggcttg accatgtctc
     7021 cagagaaggt accagttcca gcaaaggtac cagtaccatt gaagacgcca taatgatcca
     7081 gagaatcatc ggacgaatcg atctggaagg ttcctgttcc cgagaaggaa cgtcgagaca
     7141 tctccgttgt gaagagagcc gaaccatttg cggtgaatcg cccatcagcg gtcaccttac
     7201 ccaaaatcag atgctcgact ggatccgaat ctcctacaag gcagacaaat tcgcctatag
     7261 gaacggtacc attctcacaa ctgactgggt tagtaacctc tgagccattc tcgtggtaaa
     7321 cggtaccaag tatggagcct cttccctcaa acaatccgtt tcctgtgaat gagtggttat
     7381 tcagaattgt tcgagtgtag ttacctgtga aatcgactac tgacatagtg ccagtcgcga
     7441 tgactgtgcc gtcaccggtg aaagttgctt caccttcgcc actaaactgc atatcctcgc
     7501 cagtaacagt tccgctacta atcgtcaaag tgtatccatc gctatcgact tcgtcccaga
     7561 tactcgtgat ggttacatct agctccggta ctgcatcgcc ctcgaagtcg ttgtgacctg
     7621 tgaataaaat ctggcctgtt acgccggaag catcgactga aatcgataca tccaacactg
     7681 cttcgccgtt actgtgacca tcgatagctg agacgtttac gaaggtctca ccaagccagg
     7741 tctggcctga aacattaccc agaattccag tcactggatt gattgaacga tcgccctctg
     7801 cctgagggga ataaagatca gcatcccact gcgcccaaga gttctggtta ccgcgagcag
     7861 atacgatgag atctcgatct gtgtcagtgt caacaacacc cgtcattgct gtaacacgga
     7921 tgcgcccggc aggtacggta aactcgaaat ctccgttctc gtcagcatct acggtcccaa
     7981 tcggcaccca ccagttacga gggtcacgat caatgacctc tccgttcgct gatgcaactt
     8041 cttctcccga gaatgcgtca cgctcaatta gaattctagc gtttggaaca actccaatat
     8101 cgccgagttc aactgttcca gtcaaggtcg caccggaata gtacttcagg acctttgttc
     8161 cagcattagc ataaccgatg ttctcttgat cttcagtatt ctcaccctca taccagttcg
     8221 caagcacaaa gtgattcatc atcgcaccag gcatcggccg agcatactgc agaactgagc
     8281 cagggctacc ttgagcacga gcaccaccaa agagttggcc cggttgagcc gactcagctg
     8341 taatacctag agtcgaggta ccgtatccta cataggtacg agcaatcatc gtctcaaaga
     8401 attctggctg ctgagcatag ttgatgtcga cgagttcaat caaatccacc gtcgcaccac
     8461 tctgttgccg cgtaatatca agcagatact cttcttcgta agcctgctga gtcctctcaa
     8521 taactgggcc ttcaccgcgt tgggtctggt aaatcgactg gatgtatatg ctaggatcta
     8581 gtccagaaag tgtggtaggc gcgtagaaaa taccagtcgg gttgtaactg tggtaacctg
     8641 cctgtgcatt gtagaggcca cccactggat agagacgaga gtctacagca aaatagcgga
     8701 tgtcgtgatt ccgagtaatg ctctcaccag ggcctccgtc gtatgatgga acagtgtact
     8761 cgacacccgt ggtaattcgg tggtagagat cgaccattgc atccatatcc atgaaggcgt
     8821 gcatcatctg acgaccaaga gcaagacgag cgttctcacg gtgaagtgaa gtagacacgt
     8881 cagatagacc tgtcatgata tcttcagtat accattggtc tccgatgatg tagtgtgttg
     8941 tctcttcatt gacatcagac gtaccgattg tcatattgaa tcgattattt gcaccaactt
     9001 ctgttgcccc tggtgaacta acgacttctc catctttgtc gataacctcc caaatcaaat
     9061 cactggaagg agccccagat gcatcaaggc gatgtcctgt aagcaggtat actggactct
     9121 cactaggtga cccgggtata ctgctcttga ccacacgcat agtacgatct agaaggaatt
     9181 cctcgtcgcc gccgagtgta atcacggaat agaattcgtc aatctgtgca tcagtcatgt
     9241 gttgactcaa agcgttcctg aagcctgaag tgaactgccc gttcttcgag tggacgatgt
     9301 caccgagggc gagattgact acaaagaggc tcacaagatc ctcttgaccg tcagcaagca
     9361 acatattacc agttgcagga attcccgatt ggaagttatc cgaaactgat ggatgctgtc
     9421 cctgagctag ggcttggaat ccatagtccc accatgatac aaaggcgggt ttctcactga
     9481 aactcagatc cgcatcctgg gcggcaagcc aatcgtaggc acgattccag tcaccaccat
     9541 tgaatccggg cccaaaggta cccatgtacc gacagccttg acagtactga tcgaatgctt
     9601 gagtcccagg ttcagggtat gcactgttca gtattgatgg gatgtcgggc aaccatggta
     9661 gaggaagaga tgttcgaagt aggtcagggg caatgttgtg gaatgcttga tccacatcag
     9721 ctttctcttc actaccacgt gggatagcag aatcaaatcc ataggtcata tgctgtgaag
     9781 ctacaagcaa gaagacaagg aaaagagcag ggaccatagg gtttgatctt gatgcggatg
     9841 cgacggaacg aacacgagca cgaggggtac tggtaccctt acggcgccag tctcggacga
     9901 agttagatgc accaacaaaa tcccagagta ttaccatcgc tatagcgcca gaaatggcca
     9961 tagctggagt cgcgttgaag atgaaacgac cagcactcca agccatgtag gcagcgataa
    10021 cgacccaacc accgatgaga agttggctgc gatcgttcct tcgcaatcca agccagatac
    10081 cacgaacagc aaaaccgaca ccaaggagca ttacaatggg gccataggat gcaaacagtg
    10141 tggcacggtc tggtgcctga gcttcagcaa ttgttccgaa gatcttgttg gctgagaaat
    10201 agtatccacc ggtaaacagg atgtcccaac cattgtacac attgagtccg aactgtagga
    10261 acgcgaggat acctacgaag gtaccaccga gaacggctgt tgtaccaaga acaaggagcc
    10321 aaggcttgtc acggaaagca cttgcagtcc atccaagacc gaatgtaatg cctgcgatgt
    10381 agaacattgg ctcaagaccg gaggcctcga agagcaagtg aagttggtta tgcccgtaga
    10441 ctgggattgt caggatgagc gtgaggaaca tcatgttcac agccgccatc gtaagcagca
    10501 tgctgtcctt acgtcggaac atgttcagaa aaatctgcat tgcaaagatt aggaagacga
    10561 taccggggcc atagacgaat cccttccatc cgagtgccgt agtggcgaag gataaccctg
    10621 ccattgagga tagcaccatt gtctgcttgt gcttctccca tgctgcagag tatgccttga
    10681 gaagaagtga cggggagaag cctgcctcat caatgagctt gcgatcatca aggctctgaa
    10741 ccgtgcgaat ccagaagtaa aatgcgactg atatccccag aattacgaag gcatcgtgat
    10801 cagcgagacc gaaagtcgag tgaccaacgt ggctcggcat gagagcaatc aaccatgctg
    10861 ccaacatacc ggattttttg ctatgcaaag tacgagctga agcagcaact gggagcacga
    10921 tgagtgcacc aaaaattgca ggcatgcccg aaacgctgaa ccataccgcc tgctcaagat
    10981 cgattcccgt aatccaatga atggcaaggc caccaagggc gaggctccat gtgaacaaag
    11041 gtggacgtgg attgaccccc ccaagtggat aagcacgatc tgcatcaatg atgaagtggc
    11101 tatgatgagc cacgacatag tcgactgcac gcttcatgta ccaagggtca gaaccgccag
    11161 tcatatccca aagtcctgta ccattggcgt tcatagccgg caagatattc cacacaatac
    11221 ggatgaatag cgcgaaaatc aaagcagaca tgacgaccag agtgtatccg ttctctgaga
    11281 accacttgct agccatccca ggctcacgac gataagcaac ggaaccaaat cgtccacggt
    11341 tacccatgga aacaattccg aagttcacga agaaccagat gaagaaccac atcaggactc
    11401 cccgagtatc tgtaaaccac acttggaaag tatccaacgc cccctcgttg tttgcgagga
    11461 gggtatcgat gaatgagata tcttgtagca tagtcaaagt gtagagcacg aaattggcag
    11521 cgattatagt ggatgcaacc acccatcctt ctgaacgaag ataggcaaca atcatcatga
    11581 aaatgccacc agcaatagcc caccagtttc caaggtaaat accgagattg tagacatccg
    11641 tatcggctaa ttggcgcatg ctaagcatac tgatgacatg caaaagagcc cagacaccga
    11701 aggtgatagg cacgatatta ggcagagtat ccggaagatt acggaaccat cgacctacac
    11761 ctggtgcgat gaactcggtc cgcccacgta gagctgtcac catggtgata ctaagtgcga
    11821 tactgagcaa ccaaaacgac atgaagatgc tcatggcgta cgatcgattc acatcgagca
    11881 gggagtaggt cgcgtttgca tttcctccgg cggttaacgt cgcacttgac gccaacgtga
    11941 gtgccatcat cgcaccagcg atgataccaa cactgaggtt ggcttcctcc atgcgatcat
    12001 tacgctcgaa ggcatggact atcaggaatg tcatggcgcc aataacgccc aacagggtat
    12061 gacctgcggc gtctgcgccg aacaatgctg cgatgccgcc gaggatgacg actgctgtgg
    12121 cccgagaacc attgagagga gtggaagaga gcatcggacg ggcagaaatc ccagcgacgc
    12181 ctgcaatgag caggacgccg aggggcattg caatgtcagt caggttggcc gtatcggcca
    12241 tatcaatcca gttgacggat gcaccggcga acgcgatggc gatcatcgcg atcatcagca
    12301 cggggccaag gaatccgtag attccgggcg actccgccgc ggttaggttc tcttcatcgt
    12361 tcatgttgct tcctctcttg gttcagcctg taggctgtag cgcctcgggg actttccttc
    12421 cggttataac gctcacgggg gtataggcaa catggattcc gaacctgtcc aacgatttcc
    12481 agccctcaaa gagccctata tccaatatcc cgtcgatggt gagacccttc tagttcaagg
    12541 gattccatca gacgataagc aatagacgca gccccattta gagtcggagc aataccggta
    12601 gcactacaga cacgaccccc tgaagagacg atttcagctc cattctgacg agtcccggca
    12661 tggtgaatga agcctctaag agcgccttct tcgatacggg cgtccgagcc ccgaagggaa
    12721 cggccagtat tggctgtgct cggatacccc tcagaggcaa gaacaacagt cattgttgcc
    12781 gcatcatgga actttacgtc aatgtcagca atcgagccat tggcacacgc tccaaggagg
    12841 agatttagat ccgtcgcgat gagaggaatt gtgacctgcg tttcgggatc tccaaatcga
    12901 acattgaatt ctacgactcg aggtgtaccc tcagaatcga tcatcaaacc gacatagagg
    12961 caccctcggt acggaatttt ctgtgtactg aggtgagcat gcatcggttc aacaatctcc
    13021 tcaatagctc gcatcttcac actatccgtc acgactggag ccggtgcgta ggcccccata
    13081 cccccggtat ttggccctgt atcaccttca ccgacacgct tgtgatcttg gctagctgga
    13141 aggcacacat atccagattc atccataaga acaagcatac ttgcctcctc tcctgccatg
    13201 aattcctcaa gcaagacgaa accgtctgtg tcaattgcat ccgagatagt agaatgagca
    13261 atgttccggt cctctgtgac tgtcacaccc ttgccgccgg cgagaacatc gcgcttcaca
    13321 acccaaggtg aactgaacga atctaacgca tcatcgatcg catcatgcgc ctctactcgt
    13381 atcacagcag cagtgggtac tccaagagat agcatcactt gcttcgcata ttccttggag
    13441 ccctcgaggc gagctccttc cgcgtgaggt ccaaaacttg gaatcccttc ttcccgaagg
    13501 caatctgaga ggccagcaac aagcggaccc tctggaccaa caacgacaag ttctgcatca
    13561 atcgtctttg cgagaccgat tatcccatcg atatcagatg tagatactgc atgattagtt
    13621 gcaaccatcg ccgtccctgc gtttccagga gctacatgga ctgaaccaac actgagggat
    13681 tcaatcagac cgagcacaag ggcatgttcc cggccaccgc cgccaacaac gagaacgaca
    13741 gcatcggaca tagtgcagag ggtagggaac gaacccataa tccattccac gtcaataggg
    13801 tacggatttc aggcctaatt tgtagcctag aacattcaca gaacgatgaa tgaccggtgt
    13861 caatatcagt aaccagacca tcgatggaat aagttgccac gaaccataca actgatttgg
    13921 aaatagtact aatccgaaaa tgaagcagat tattgcgaag ggtaatgtgt cgaggagcgg
    13981 ggccttggaa gacacatccc cttcacgttt caaaccccga cgacgcttga agaatgaacc
    14041 aacagaatcg ccaatgagtg aaccaaatcc aaggacataa ccaatgaaaa atgcagaacc
    14101 atatagtcca aggaaaccaa accatggatc cacatgccca aaccccatca taggatcgta
    14161 aaacggcttg ctatctacac cattaccact ccatagaata gttgctagca ctgctagaag
    14221 acctgcgaga agcggaccgc ccaacaaacc attccaagac ttaccatcgc caagaagtcg
    14281 gaaaccatcc ttccagttcc ggccaccgtc aatcctccag attggggccc ctgttaactc
    14341 aggaagccat tttccaaaaa tcatagctcc ggtgttagcg agataggcgg gcccatacaa
    14401 tagaagcaga gcaagaaccc cgagagggtc gatagaccca aacaagccct ctggaatcat
    14461 gactcaacgt acgaatgccg gcccttcaat acatccacgg attaaggtgc ggcattaatc
    14521 cagtcaatat ctgcttgtga gacatcaaag aataattcgc tgaaccaatt ttcattgaca
    14581 tcatcgctat catacaaatc acgtagtatt tcgtgttgca tagcaggaga aattacacta
    14641 attgttgatt tgacacctga ggcatcttcc gcaattacat cgaatatacg atagagatgc
    14701 agaaatcgct ccccttctaa ttcaagtcgt tcaacctgca tgcttccatt ccaatcgatt
    14761 tcgacaattg agaagccttc tgcagtgttg agactcaggt caactactcc atcccgatcg
    14821 gcatctattc caactgttac cgtctcacct tctggatcga ttgccgacca ataagccatt
    14881 gcaacatagt accagtcagt agtaaaattg tgtgtatcat catccaaagc tgtgatttta
    14941 gcagtgattc gtggtggttg gttaagagta atcccagatg aacccatatc tattgtgctc
    15001 cagccagatg atgtacatgc ttggaattca gtgacatctt cgacatagta caacttccca
    15061 agatttgcat cattcgcacc gggacaagta ggcagattag atgcagaagc aacatggtat
    15121 gttggccaat catctagagg ctcacctaat tcgatctctg taccgtctga agcctcagga
    15181 ctagtgccac caagacagcc agcgactgac aacgataaca tcatagtaaa caataaaatt
    15241 gcaattaggg tattcttcat gaatctgaat cttaaattta agcaaataat gattcgcaca
    15301 atatagcgag gatttgaagc accttgccat gaagccagag ccatgagaac ccttcgtgca
    15361 cgagctacct caatctcatt cttgctcttg atgctacttt gcaccccgct catagggacc
    15421 atatcggcta cagaaccacc tgatggagga caaagcctca cgattacagg agatgttaca
    15481 tgggaccaag atgacgattt tgatggcact gtggatatcg caaatggtgc ttctttaacg
    15541 attactgcca atctggatgt tgcgaatgga agccgaatca tagtacaccc cggcggcata
    15601 ctctcgattt ccaacggctc gctgaatgca gaatggactg atacagacta ctcatggatg
    15661 aggaacagcg acgaagggca tcgttcgaga atcatgattg agaccgcggg acgccaaggc
    15721 tcgttcgatg tcattctgac ctcagccaag aactcctact tcaacggc
//
LOCUS       DUKB01000225            2655 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_461931, whole genome shotgun sequence.
ACCESSION   DUKB01000225 DUKB01000000
VERSION     DUKB01000225.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_461931"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..473)
                     /locus_tag="HA345_07410"
     CDS             complement(<1..473)
                     /locus_tag="HA345_07410"
                     /inference="COORDINATES: protein motif:HMM:NF018242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HIH85221.1"
                     /translation="MRAVMALSGGMDSTSLLLNLLARGYTVTCISYRYGQKHSIEIVR
                     AKENIARFQSAGLPVYHSVVDLTSSMSVFHSALTSSEIEVPEGHYEEEQMKQTVVPNR
                     NAIFASILYGLALSVSEREDLDVSIALGVHSGDHAIYPDCRPEFYNALQNAFEIG"
     gene            complement(476..1078)
                     /locus_tag="HA345_07415"
     CDS             complement(476..1078)
                     /locus_tag="HA345_07415"
                     /inference="COORDINATES: protein motif:HMM:NF015983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HIH85222.1"
                     /translation="MTEVTYPIVEIFHSVQGEGYHAGIPHVFVRFGNCNLRCQWCDTD
                     FLTFTERTLDSIVEEVLSYNCNRVIFTGGEPAMQDLTTIGGRLKEHDITLSIETNGTI
                     EVDPIIDWICVSPKDQIYPGVKIRQRSGNELKVVYCGQDLEIYNDLIDGFEHLFLQPC
                     YMDNISVEENGRNFQSVESIVKLNPEWRLSLQTHKWMGVL"
     gene            complement(1090..1683)
                     /gene="folE"
                     /locus_tag="HA345_07420"
     CDS             complement(1090..1683)
                     /gene="folE"
                     /locus_tag="HA345_07420"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019994189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HIH85223.1"
                     /translation="MSELNREEAKTAVRTLLEWIERSEEESGSREGLVDTPERVVSMF
                     DEIFSGYTTSAAEILSSTFNGEGYDGIVLLKDIEFHSTCEHHLQPFSGRAHVAYIPVD
                     RIVGISKLARLTDLHAKRLQNQERITKGIADDLEEHIQPLGSAVIIEARHGCMRCRGV
                     LKQNAVMTTSAMRGVFFDRSEARSELLQLIQSNSKDL"
     gene            complement(1687..1863)
                     /locus_tag="HA345_07425"
     CDS             complement(1687..1863)
                     /locus_tag="HA345_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015053690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HIH85224.1"
                     /translation="MPKVSLDMPEQLMTDLRTHVGDDAKFVSLADAIRTACRKLLDQL
                     DDIDARHGRISKED"
     gene            complement(1916..>2655)
                     /locus_tag="HA345_07430"
     CDS             complement(1916..>2655)
                     /locus_tag="HA345_07430"
                     /inference="COORDINATES: protein motif:HMM:NF024091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HIH85225.1"
                     /translation="NGVSLTFDDVRDPVGWDAGGTTTDVATSGEQAAFAFAMFVPFII
                     ALWTATSAVQPSIDLTAGERERGTLEALLCTPIRRDDLMWGKWLAVAIIASASVLFQM
                     VGLFAAIHFLAGGFFSTPSVSLEGWVMFLVTIILFAVFVVAVEMAIAMRARSVKEAGS
                     TLGPVIILFIGPAIFAQFVNMESIELWWFIAPVFNISLGMRASLLDDFTLLYAVLWMG
                     SSILYALAATAWASRQFNREDLVESIS"
BASE COUNT          760 a          653 c          570 g          672 t
ORIGIN      
        1 ttaccaatct caaatgcatt ctgcaacgca ttgtagaatt cgggacggca atcaggataa
       61 attgcatgat caccactgtg gactccaagt gcgatgctca catccaaatc ctctctttca
      121 gatacactca gggcaagacc atacaggata gatgcgaaga ttgcattgcg atttggaacg
      181 acggtttgct tcatctgttc ctcctcataa tgaccctcag gtacttcaat ctcagatgag
      241 gttagagccg aatgaaatac tgacatcgaa gaagtaagat ccactactga atgatatact
      301 ggaagacctg cactctggaa acgggcaata ttttccttgg cacgaacaat ctcaatcgaa
      361 tgcttctgac cataacgata cgaaatacaa gtgaccgtgt aacctcgagc taagaggttc
      421 agtagtaaag aagtggaatc cataccaccc gataatgcca tgactgcgcg cataatcata
      481 acactcccat ccatttgtga gtctgtaaag aaagccgcca ctctggattc aacttcacta
      541 tcgattctac gctctggaag tttctaccat tctcttcgac tgatatgtta tccatgtagc
      601 atggttgaag gaacagatgt tcgaatccat caatcaaatc gttgtaaatc tcaagatctt
      661 gaccacagta tacgactttc aactcattac cgctacgttg acggattttc acaccaggat
      721 atatctgatc ttttggagat acacaaatcc aatcgatgat tggatctacc tcaatggttc
      781 cgttggtttc aatcgatagc gtgatgtcat gttccttcaa acggccacca atcgtcgtga
      841 gatcttgcat cgcaggttca cctcccgtga agatgacgcg attgcaattg taggatagaa
      901 cttcctccac aatggagtcc aaggtccgct cagtgaaagt cagaaaatct gtatcgcacc
      961 attgacatcg aaggttgcaa ttaccgaatc tcacgaaaac atggggaata ccagcatggt
     1021 atccttcgcc ctgtacagag tgaaatatct ccacgattgg ataagttacc tcagtcatct
     1081 ggaacactct cagaggtctt ttgagttcga ttggattaat tgtaaaagtt cggaacgtgc
     1141 ttctgaacga tcgaaaaaca caccacgcat cgcgcttgta gtcatgactg cattctgctt
     1201 caagacgccc cgacaacgca tacaaccatg cctcgcttca atgatgactg cggaaccaag
     1261 tggctggata tgttcctcaa gatcatctgc gatacctttc gtaattcgtt cctgattttg
     1321 caatctcttt gcatggagat ctgtaaggcg ggctaactta ctaattccaa caattcgatc
     1381 tactggaata tacgcgacat gggctcgacc agagaagggc tgaagatgat gctcgcatgt
     1441 agaatgaaat tcgatatcct tgagcagcac aatgccgtcg taaccttccc cattgaatgt
     1501 tgaagacagg atctcagcag ctgaagtagt gtatccagag aatatctcat cgaacataga
     1561 tacaacccgc tcaggtgtgt caactaggcc ctctctggaa ccagattctt cttctgaacg
     1621 ttcgatccat tctagtagag tacggacggc cgttttcgct tcttctcgat taagttccga
     1681 catgattcaa tcctccttcg aaattctacc atgcctagca tcaatatcat ccagttgatc
     1741 gaggagtttt cgacatgccg tccgaatagc atctgcaagg ctgacgaact tcgcatcatc
     1801 gccaacatga gtgcgaagat ctgtcatcaa ttgttcaggc atgtccagag atacctttgg
     1861 catgatacgc ggtcagacga ggtctacata atactatgct attactcaag taatatcaag
     1921 agatgctctc aacaaggtct tcccggttaa actggcgtga tgcccaagct gtcgctgcta
     1981 gtgcatagag gatactgcta cccatccata ggactgcata gaggagggtg aaatcgtcta
     2041 gtagagaagc acgcattcca agagaaatat tgaacacagg ggcgatgaac caccagagtt
     2101 cgatactctc catattgacg aattgagcga atatagctgg gccaatgaag agtatgatta
     2161 cgggacctag tgtagaccct gcttctttga cagaacgtgc acgcatcgca attgccatct
     2221 cgacggcaac gacgaaaacg gcgaaaagaa tgattgtcac caggaacatt acccaaccct
     2281 ccaatgatac gcttggtgta gagaagaagc cgcctgcaag gaaatgaatt gctgcgaaaa
     2341 ggccaaccat ctgaaacaac accgaggcac tcgcaattat cgccacagcc aaccacttgc
     2401 cccacatcag atcatctcga cgtatcggag tgcatagaag agcctcgagt gtacctcgct
     2461 ctcgttcccc tgctgtgaga tcgattgatg gttggactgc ggatgttgca gtccataagg
     2521 caatgatgaa tggtacaaac atcgcgaatg caaatgcggc ctgctcgcca ctcgttgcga
     2581 catctgtagt tgttccacct gcatcccatc ctacggggtc tcggacatca tcgaaagtta
     2641 gagaaactcc attca
//
LOCUS       DUKB01000226            3771 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_223811, whole genome shotgun sequence.
ACCESSION   DUKB01000226 DUKB01000000
VERSION     DUKB01000226.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3771)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3771)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3771
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_223811"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..2369
                     /locus_tag="HA345_07435"
     CDS             <1..2369
                     /locus_tag="HA345_07435"
                     /inference="COORDINATES: protein
                     motif:HMM:NF022100.1,HMM:TIGR01451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85226.1"
                     /translation="IHTLRLTLDPDGSVGELNDEVNGTDNNVLTYDLNVTAIGVRIVP
                     HLESGVLPSTPEEFTAASSRVLDPRIESSVTFELDIMNEGTAMIEAGLIVTPVQYVRD
                     DGVLDAPADEWSRVLNESGPWNLPEGGQTGSIHTITLILTDVDADLNAPSGSIYALPG
                     THVVDLTLYDRMSPLVSFNVRLTVEVLRVEGLDTILAGDQGLAGVPGETVSYTITVRN
                     SGNGPTIFDVSCSNSDRWAVELGSGNSSAVSLDPLNRLQFVALSIRVIIPEAYLGEPA
                     AGMQVQVDCTIVSSADEMVGSTESVQVSVLESRRFTVDIYEEDGTPVGASALSAQRAV
                     LNEDVVNTTIEIENEGNIQFSVEVTVSSGLTTWPVRLLSDGVEVTMPHSVMLQPGSIS
                     TLVAEMIVPFTADNLDTNMITVRTSTGSFDPLVNQSRFIVEQRSEFAFLGPESGIVSV
                     LPGNTTSFDVSVQNVGNVPVVLDWVFPTLPDGWSIGFLSSAPITLAMNEERVATIGLT
                     IPLGIDAGMSPIAVDILVRGGVSSAELNLARSISLGVQVEEASVPVVSFSDDRFTDLP
                     RSEVTILNMTARNGGNIPLTTTFSTVDISGWTVDFEPSGVTNLAAGESVDVKVRITPS
                     DSAEPGVKSFVILATMGDLVVEAGSFEATVTSGTDTGGVTGFLAGIGVPTWAVGIVLL
                     VVFGVALLGLFSLRNRGIDRLSEDERLVPAGSALNQGDFQQRMSAALDTGVVNESLVS
                     GGVSQAEINAALNSGLAPLPSKPPSGMPPGHGSGSPPPGLPPGFPPNG"
     gene            2410..3048
                     /locus_tag="HA345_07440"
     CDS             2410..3048
                     /locus_tag="HA345_07440"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013909574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HIH85227.1"
                     /translation="MESSIVLFGPPGAGKGTQAGRIVQATGKPQVSTGDMLRAAVAAG
                     TELGRIAKGHMESGGLVPDDVIIGLIEERVKAPDAEKGLLFDGFPRTVAQAEALAEIA
                     PVSLVIAIEVEDESIVGRITGRFTCGGCGSVYHDQFRPCEVEGRCDECGGSDFKRRAD
                     DSEDTVRARLSAYHEQTSPLASWYEQRGLLHRIDGNASIDEVGVRISKILPE"
     gene            3058..3375
                     /locus_tag="HA345_07445"
     CDS             3058..3375
                     /locus_tag="HA345_07445"
                     /inference="COORDINATES: protein motif:HMM:NF015965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85228.1"
                     /translation="MSRRGRNRRIRDERAQKAVDELSTILLNHDLSDRVRTTAARDLV
                     RTARRHNSRLPDSIRHWICRSCHNPMLPGAGARIRIRCGFRVTTCTICGQIRRFPIKE
                     GEE"
     gene            3405..3653
                     /locus_tag="HA345_07450"
     CDS             3405..3653
                     /locus_tag="HA345_07450"
                     /inference="COORDINATES: protein motif:HMM:NF014087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbY family RNA-binding protein"
                     /protein_id="HIH85229.1"
                     /translation="MNLARNPDLKATVRLGRNGLTASIIEEIRVQLSARSLVKIRLNR
                     GFADGGESRSEIFTHLEEQVGARCIFSRGNVAVLWKRA"
BASE COUNT          853 a          872 c          986 g         1060 t
ORIGIN      
        1 atatccatac cctgcgtctg actttggatc cggatggctc cgtaggtgaa ctcaacgatg
       61 aggtcaacgg gaccgacaat aacgtcttga cttacgatct taatgtcact gcaatcgggg
      121 ttcgaattgt cccccatctt gagtctggag ttttaccttc tactccagag gagtttacgg
      181 ccgcgtcatc acgcgttctt gatccacgaa ttgagtcttc agtgaccttt gagttggaca
      241 taatgaatga gggcacggcg atgattgaag ccggactgat tgtgactcct gtgcaatatg
      301 tgcgtgacga tggggttctt gatgcacccg cagatgaatg gtcccgcgtt ctgaatgaat
      361 caggtccatg gaaccttcct gaaggtggtc aaacaggttc aatccacacc attacactaa
      421 ttctgaccga tgtcgatgct gatttgaatg cgccctcagg atcgatctat gcattgcctg
      481 ggactcatgt ggttgatctc accttgtatg accgtatgtc tcctcttgtc tcattcaatg
      541 tacgactaac cgtagaggta ttgcgtgtcg aggggttgga tactatactt gctggtgatc
      601 agggtctagc aggcgttcct ggagaaacag tcagttatac aatcacagtg cgtaactctg
      661 gtaacggtcc taccatcttc gacgtatcct gtagcaactc agatagatgg gcggtagaac
      721 ttggctcagg caattcttct gctgtatcgc tcgatccgct caatcgattg cagtttgtag
      781 ccctatcaat ccgtgttatt attccagaag cttaccttgg tgagccagct gctggtatgc
      841 aggtacaagt cgattgtacg attgtctcaa gtgcagatga aatggtgggg tctacagaat
      901 cggttcaggt ttctgtattg gaaagtcgga gatttacagt ggatatctac gaagaagatg
      961 ggactcctgt aggcgcatct gccctctctg ctcagcgtgc cgttttgaac gaagacgttg
     1021 tcaataccac catcgagatt gagaatgagg gtaatatcca gtttagtgtc gaagttactg
     1081 tgagttcagg attaacgact tggccagtgc gcctcctttc agacggtgtc gaggttacaa
     1141 tgcctcattc agtgatgtta caacctggtt cgattagtac gcttgtcgct gagatgattg
     1201 tgccgtttac cgcagataac cttgacacaa acatgatcac tgtacgcacc tctacaggtt
     1261 cgtttgatcc gttggtgaac cagagtcgat tcattgtcga acaacgaagt gaatttgctt
     1321 tccttggtcc tgaatcggga atagtttcag tccttccagg taacactacc tcattcgatg
     1381 tctcagttca gaatgttggc aatgtccccg ttgttctcga ttgggtattc ccaactttgc
     1441 cagatggatg gtctattgga ttcctatcgt ctgctccgat tacattagca atgaacgagg
     1501 aacgtgttgc gacgattggt cttaccatac cgcttggtat tgatgctggt atgtctccta
     1561 ttgctgtcga catacttgtt cgaggaggtg tgtcttcagc agaactcaat ctcgcgcgtt
     1621 ctatatccct gggcgtccaa gtggaggaag catcagtacc agttgtttcc ttctctgatg
     1681 atcgattcac tgatctccct cgttcggaag ttacgatact caacatgact gcaaggaatg
     1741 gcggtaatat tccgctcact acgaccttct caacagtaga cattagtggt tggaccgttg
     1801 attttgaacc atcgggagta acgaatcttg cagctggcga gtcagtcgat gtcaaggtaa
     1861 gaatcactcc ttctgattct gctgagccag gggtcaagtc atttgttatc ctggccacaa
     1921 tgggtgacct agttgttgaa gcaggcagtt ttgaagccac agttactagc ggaactgaca
     1981 cagggggtgt cacgggcttc ctcgcgggca ttggtgttcc tacatgggca gtcggaatcg
     2041 ttctcttagt tgtattcggg gttgctttgc ttggtctctt cagtctccgg aatagaggca
     2101 ttgacagatt atcggaggat gagcgactgg tacctgctgg atcggctttg aatcaaggag
     2161 atttccagca acggatgagt gctgccttgg atactggtgt ggtaaatgaa tctctagtta
     2221 gtggaggtgt gtctcaggca gagatcaatg ctgcgctcaa tagtggcctt gccccattac
     2281 cttcgaagcc tccctctgga atgcctccgg gccatggcag tggctccccc cctccaggtc
     2341 tacctcctgg tttccctcct aatggttgat gccggtcgac ttatcccttg tctccccgtc
     2401 gtgtgttcca tggaatccag cattgtcctc tttggaccac ctggtgccgg taagggtacg
     2461 caggcaggac gtatcgttca agcgacagga aaaccacagg tatctacagg cgatatgctc
     2521 agagctgctg tcgccgcagg aacagaactt gggagaatcg caaagggaca tatggagtca
     2581 ggggggcttg tgcctgacga tgtcattatc ggactcattg aggagcgcgt caaagcaccc
     2641 gatgcagaaa agggcctcct tttcgatggt tttcctcgga ctgtagcaca agctgaagct
     2701 ctagccgaaa tcgctccagt atctcttgta attgccatcg aagtcgagga tgaatcaatc
     2761 gttggccgaa tcacggggcg ttttacttgt ggaggatgtg gatctgtgta tcatgatcaa
     2821 ttccggcctt gtgaggtaga ggggcgatgt gatgaatgtg gcggctccga tttcaagcgt
     2881 agggctgacg actctgagga tactgtccgt gctaggttat ctgcctatca tgagcaaaca
     2941 tctcctctag cgtcatggta tgagcagagg gggcttctcc atcgcattga tggtaatgcc
     3001 tcaatcgatg aagttggagt gaggatctca aagatccttc cggaatgagg gttttgtatg
     3061 tctcgtcggg gccgaaatcg gcgtattcgc gatgaacgcg ctcaaaaagc ggtggacgag
     3121 ttgtctacaa tccttctcaa tcatgatctt tcagatcgag ttcgtaccac tgccgcacgg
     3181 gaccttgttc gaactgcaag gaggcataat tctcgattgc cagattcgat tcgccattgg
     3241 atatgcagat cttgccataa tccgatgtta cctggtgcag gcgcccgtat ccgtatccgt
     3301 tgcggattca gggttactac ttgcactata tgtggtcaaa tccgtcgatt tccaatcaag
     3361 gaaggtgagg agtaatgaaa gaatcagaaa taccgcgcaa catcatgaat ttggctcgta
     3421 atcccgatct caaggcgacg gtccggctgg gaagaaatgg ccttactgca tcgattattg
     3481 aggagattcg tgtacagtta tcggcccgtt ctttggtcaa gattcgtctc aatcgaggat
     3541 ttgcggatgg aggagaatct cgctccgaaa ttttcaccca tcttgaagaa caggttggtg
     3601 cccgatgcat tttctcccga ggcaatgtcg ctgttctttg gaagagggca tgaacctctc
     3661 atgccatcta cttctgatgg atggttattt gaatcggatt caagacactt tcagatatgc
     3721 gcactcggac atactcccaa gcgttctggt tacgagcttc gattcttctt g
//
LOCUS       DUKB01000227            3352 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_194689, whole genome shotgun sequence.
ACCESSION   DUKB01000227 DUKB01000000
VERSION     DUKB01000227.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3352)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_194689"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            100..1005
                     /locus_tag="HA345_07455"
     CDS             100..1005
                     /locus_tag="HA345_07455"
                     /inference="COORDINATES: protein motif:HMM:NF013827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HIH85230.1"
                     /translation="MEEVLFALWVAAIIGPLAWSWYHKASIAMAMTLSLLFGYIVQLM
                     WGWTLDSSQLSELYIRIVMIPALVEEGHVHTLITSGFVHSWNSPLHVLGNIVIIALVG
                     IPLEDRLGRGKWLISYAIGLLGGSIAWTLANGGSYTPALGASGAAFGILGAYLCGWPQ
                     DEVYFPIILIRKWPVQFIALFYFGFEIFKAWQVYGLSQVSHVAHIAHFGGFILAYATL
                     PILKRNIEWEGEMELEEIKTENPFEGVDDLVKRLHEEGDEKETRQAWLEEIADRAKCP
                     VCEGSLYVKKMRIRCESASCKIAWP"
     gene            1077..>3352
                     /locus_tag="HA345_07460"
     CDS             1077..>3352
                     /locus_tag="HA345_07460"
                     /inference="COORDINATES: protein motif:HMM:NF012311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HIH85231.1"
                     /translation="MRGIKALLLAVVFLIADMSAFASAIPNQTEETIEEIADRTPFRG
                     DKHATEDYGWWFSYGPDSNFDGMDDRLEQIIAGEESQSTTAITGADGRTTVAIIVDYA
                     WHPGQEEIEDLVAILRSHGWDADGSWFQVMDSIDSIVVDHVPVSALLEIHAIESVVVV
                     EMQNVMYPTLENANPASRIQPSDVYAGTVYDRGYDGEGIVIAVLDSGVDNEHRSLNDF
                     DDQNDEPDLDPNSYDDQKWVAGYDATSQAANPDGSQDPDDGQGHGTHVAGIALGTGDS
                     SRVHIGAAPGAFLVDIKVLTDSGGTNSQNSLNGIQWMINNKDTDWGNGARGIQIGQMS
                     FGSIGNPINQDNGDNGTGAEARLVNNATYDHDISCIVAAGNDGMRRIASPGSADGAIT
                     IGSADNADSINRTDDFMASYSNTGPRESDNDDDDWDELKPDLVAYGSGIYSASAATGT
                     SFPGTPRPEADSSYESKDGTSMATPLVSGVVALMLQADSSLKPTEIKDILRNSSEMRG
                     SASEPSVSDRWNSDWGFGLMDASCAVDLALRRSCTPLTDVGGGVIVPPPNESEVGIEI
                     TSPENGTWWLTGDVVTIEGDLISGTGPWYSVRVKVTQYYEEDDEEVLMDWTEAGIQNN
                     SWSFSEMVSESWYNPDETAVIIEAQAIGLDDLVSNAANWARIGKMSASFGSPSSGSTL
                     TDTVTFSGIAQGIEPSELIYRVNSEEWVTAYTFDEEDNEAQDWSFTWDSTQIDDGSHK
                     ISIRLVNKSGIESDIVRRT"
BASE COUNT          939 a          701 c          847 g          865 t
ORIGIN      
        1 ccggcctcga aggacggtga cttcggatag ttcgatgatg cccatcgggg cgagcgagga
       61 accgcattgc cttcaagccg acgcctcctc cgcctgtaca tggaggaggt attgttcgca
      121 ctttgggtgg cggcgattat tggccctctg gcctggtctt ggtatcataa agcatccatc
      181 gcgatggcta tgactctatc cttactcttt ggctacattg tccaactgat gtggggctgg
      241 actctcgatt cttcacaatt aagcgaactc tacattcgaa ttgtaatgat acctgcactg
      301 gtggaagagg ggcatgttca cactttgatt accagcggtt ttgttcactc ttggaattct
      361 ccgctgcacg tactggggaa tatcgtaatt attgcattgg ttggaattcc acttgaggac
      421 cgtttagggc gaggtaaatg gctgatttca tacgctatcg gattacttgg aggttccata
      481 gcttggactc ttgctaatgg cggctcgtat acgccagcct taggggcttc aggtgcggcg
      541 tttggaatac tcggcgcata tctctgcggc tggcctcaag atgaggtata tttccctata
      601 attttgataa gaaaatggcc tgtacaattc atcgctttat tctactttgg atttgaaatt
      661 ttcaaagctt ggcaagtcta tggattgtcg caggttagtc acgttgcaca catcgctcac
      721 tttggcggtt tcatactcgc atacgcaaca ttaccgattc tgaaaagaaa catagaatgg
      781 gaaggcgaga tggagttaga agaaataaaa accgaaaatc catttgaggg tgtagatgat
      841 ttagtgaaac gtctgcatga agaaggagac gaaaaagaga cacgtcaagc ctggttggaa
      901 gaaatcgcag atcgggcaaa atgtccagtt tgtgagggtt ctctttacgt caagaaaatg
      961 cgaatcaggt gtgaatccgc ctcttgtaaa attgcttggc cttgagtccc gtagggactc
     1021 ggtttcaccc aaggttcatg tgtgatgtaa ttcgcccgta gggcgggttg agtcgcatga
     1081 gaggaatcaa agcactactt cttgctgtcg tttttctcat tgcagatatg tccgcattcg
     1141 cttctgcaat accaaatcaa actgaagaaa ccatcgaaga aatcgctgat agaactccat
     1201 tccggggcga caaacatgca accgaagatt acggttggtg gttttcatat gggccagatt
     1261 caaattttga tggaatggat gaccgccttg agcaaattat cgccggcgaa gaatctcaat
     1321 caactactgc aattaccggg gcagatggaa gaacgactgt tgcaataatc gtcgattatg
     1381 catggcaccc aggtcaagag gaaatcgagg atttggtagc aatcttgcga agccacggtt
     1441 gggatgcaga tggttcttgg ttccaagtta tggattcgat tgactcaatc gttgtcgatc
     1501 atgttccagt aagcgcacta cttgagattc atgctattga atcggtagta gttgtcgaga
     1561 tgcaaaatgt catgtatcct acacttgaaa atgcaaatcc tgcaagtcga atccaaccct
     1621 cggatgtata tgctggaacc gtttatgata gaggatacga tggagaggga attgtaattg
     1681 cggtactgga tagcggtgtc gataatgagc atcgttctct gaatgatttc gatgaccaaa
     1741 acgacgagcc agatttggat cctaattcat acgacgacca gaaatgggtt gcaggatacg
     1801 atgcaacttc acaagcagcc aaccctgatg gttcacaaga cccggatgac ggacaagggc
     1861 atggcaccca cgtcgcaggt atcgctctcg ggacaggaga ttcttcacga gttcacattg
     1921 gcgcagctcc gggagctttc cttgtcgata tcaaggtact aaccgatagc ggaggtacta
     1981 attctcagaa ttccttgaac ggaatccagt ggatgattaa caataaagac acggattggg
     2041 gtaatggtgc aagagggata caaattggtc agatgtcatt cggatcaatt ggcaatccaa
     2101 tcaaccaaga caatggtgat aacggcacag gtgcggaagc acgactcgtt aacaatgcaa
     2161 catacgacca tgatatctct tgtattgtcg cagcaggtaa cgatggtatg cgaagaatcg
     2221 catctccagg aagtgcagat ggcgcaatta caattggttc agcagacaat gcagactcca
     2281 tcaacagaac agatgacttc atggcttctt attccaatac agggccgaga gaaagcgaca
     2341 atgatgacga tgattgggat gaattaaaac cagacctagt cgcttatggt agcggaattt
     2401 attctgcctc ggcggcgacg ggtacatcat tccctggaac gcctcgaccg gaggctgaca
     2461 gttcctatga atccaaagat ggtacatcta tggcaacacc actagtttca ggtgttgtag
     2521 cactgatgct acaggcagat tccagtttga aaccaactga aatcaaagat attcttcgaa
     2581 attcaagcga aatgaggggt agcgcttcag aaccaagtgt ttcggataga tggaattcag
     2641 actggggatt cggattgatg gatgcttctt gtgctgtaga tctagctctt agaagatcgt
     2701 gtactcccct aacagatgta ggaggcggcg taattgtacc tccaccaaat gagtctgaag
     2761 ttggcataga aatcacttct cccgagaatg gaacatggtg gctgaccggt gatgtcgtta
     2821 ccatcgaagg agacctcatc tccggaacag ggccatggta ttctgttaga gttaaagtaa
     2881 ctcaatacta cgaagaagac gatgaagagg ttctgatgga ttggactgaa gcaggaatcc
     2941 aaaacaattc ttggtcgttc tcagaaatgg tttcagaatc atggtataat cctgacgaaa
     3001 cagcagttat catcgaagcc caagcaatag gccttgacga tcttgtttca aacgcagcaa
     3061 attgggctag aatcggtaag atgtcagcct cctttgggtc accatcttca gggtcaactc
     3121 tcactgacac agtaaccttc agcggaatcg cacagggaat tgaacccagc gaattaattt
     3181 acagggtaaa ttcagaagaa tgggttactg catatacttt tgatgaggaa gacaatgagg
     3241 cccaggattg gtcattcaca tgggattcta cccaaataga cgacggttcg cataaaattt
     3301 caatcagatt ggttaacaag agtggaatcg aatctgatat cgttcgcagg ac
//
LOCUS       DUKB01000228            5497 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_272276, whole genome shotgun sequence.
ACCESSION   DUKB01000228 DUKB01000000
VERSION     DUKB01000228.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5497)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5497)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5497
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_272276"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..399
                     /locus_tag="HA345_07465"
     CDS             <1..399
                     /locus_tag="HA345_07465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85232.1"
                     /translation="NLEWVDSAGEQQFRLFNLTDKYAPADSCLTDSTLIDNSGNSGDS
                     TGNCGVYGRLPSNSNSMVTFKDSIDCTGPDADCSTGFGAGDIIYILMKDPVTGEMLDS
                     MLITVQYVPGGQTATPLMQYTGTTSPARLS"
     gene            492..1169
                     /locus_tag="HA345_07470"
     CDS             492..1169
                     /locus_tag="HA345_07470"
                     /inference="COORDINATES: protein motif:HMM:TIGR01488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family phosphatase"
                     /protein_id="HIH85233.1"
                     /translation="MSAVKAVAFDCDGVLADAGSSWAVIHSHFGTGDPSLLQAFLNKE
                     LTDEEFMREDIRLWKDVQPRIHRDELFRCYSGVRLMGGAREVVSELKERGIHVVIISA
                     GVDLFVSTIARMLKVDDWAANGFEYDGQGYLLDEGICRVSAWNKGEMVSKLHRILGIH
                     PSEIVSVGDNSMDLSMQIEGSRFIGFNPARDEAHAAFKDAGVPVVLGTDLRAIWPNLF
                     PGETLGA"
     gene            1181..2449
                     /locus_tag="HA345_07475"
     CDS             1181..2449
                     /locus_tag="HA345_07475"
                     /inference="COORDINATES: protein motif:HMM:NF024808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HIH85234.1"
                     /translation="MLRNATPFILVILLLLPGCVSPDSSIEETDTETVSLVVWHSFAT
                     ESKELATFESQIVRFMASNPGVEVETSAIPFSEAARQFMIAAQGGEAPDVVRLSSDQL
                     GEIGEVRVGGQPLLEDLRPHLTPLERSKFDARALNAMKYEGDLLGIPASQDCLSLIFN
                     PLLFDAAGVDYPSEDWTLNDMVSAASQLTQGDVHGLAMPVKNAYWWFGFQAGYGGSLF
                     DENGTPTLDSNGSAEAMDWMIDLEMTHGVVQTGTQSESMKTQFLSSKAAMVVDGPWNW
                     ATYEAGRIPLQQSILPIVDSTGERVSPLVTYKGWSVSKQSSQKEWSVRLALHLSSSES
                     QREFALETYTMPTHVDVYVDPEVAQNSVISGFLDQLMVGFPAPTTEAMSMVYDPLGTA
                     FENVYSGELDATTALVAADAALESDLEGSG"
     gene            2446..3918
                     /locus_tag="HA345_07480"
     CDS             2446..3918
                     /locus_tag="HA345_07480"
                     /inference="COORDINATES: protein motif:HMM:NF012738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HIH85235.1"
                     /translation="MKRILILLIFPILLGIVSAGSVNQIELDGSVGYRQVGIEMALSE
                     PATNGTYYEIRMNGSEFSRTEDSLLHSVIIVGETADLMQPEMGDWYDDCHYGIGDDII
                     VPIHRKSDGSGVVPNGTISIGCTLTGIPSGQEYYFAVLTIYSNGTEVISPVMLSSSTT
                     EDTLAAPLKTSPYLFAIGSISLSLIALLYGLRWLDYRDGRTTSKGAHLYIAPALLSLA
                     VLTFYPVIYGMWLALTDADQSRLGEHVYVGLENFFTVFSTSGFLRVTVFTLLWTVVNV
                     VSHIGFGLLLALALNKSGLRGKTMYRTLLLLPWAIPSYITVLVWRGMFEPAGAINDLL
                     GTDLNLLADANGARFAVILVNIWLGIPFMMMSISGALQALPKDMYEAAEVDGIGTLGQ
                     FRHLTLPNLRSALVPLSLLGFIWTFNMFNVIYLMTDGGPNLDFDGPGSTDILITYVYD
                     VAFRDGAYGVAAAWSVVIFVMLVVFSWTYMKRTNATEAVT"
     gene            3915..5195
                     /locus_tag="HA345_07485"
     CDS             3915..5195
                     /locus_tag="HA345_07485"
                     /inference="COORDINATES: protein motif:HMM:NF012738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HIH85236.1"
                     /translation="MSSMDSIPRASKSDLARRWYVPQEIQSLRAYYAVVIFVASLSVA
                     LSTMRGNEDAIYSSMCIVLVHLVVLLLLRQLDHGTKNIRDGIFAISGIGLFLSILHHL
                     DGPGLWIDIWFTTWTAVPFLLVPVAGSMPMVTLWVSGRLTVKAAELGLRMNRVMAEKH
                     SHALHHLVLLHAVAIVALPLLWILDVAVSPGNSLGGGFMDEVTGEHFEKLVSSESFWL
                     WTRNSFIVSIGTTLLGLALAIPAGYAFSRFRFRGRDPAMFAFLLVQMFPGVIILVPYF
                     LVMKALGLLNTSLGLILAYSVTALPLCVWMLKGFFDTVPRELEEAALVDGCSQTQVFW
                     RIVLPLSLPAVAVTALFSFLAAWNEFLLALTFNTSEEMYTLPVGLASLISSTGQAWGD
                     FAAASLLVSLPVVVLFIAFQRFLIEGLSAGGVKG"
     gene            5200..>5497
                     /locus_tag="HA345_07490"
     CDS             5200..>5497
                     /locus_tag="HA345_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011292189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HIH85237.1"
                     /translation="MVNVIYRGVTKRYDNGFMAVDNLDLEIDDGEFLVLLGPSGCGKS
                     TTLRMLAGLEEVTGGDVLIGGARVNDLPPGARGIGMVFQSYALYPQMTVKGNLSF"
BASE COUNT         1193 a         1264 c         1438 g         1602 t
ORIGIN      
        1 aatctcgagt gggtggattc agctggagag caacagttcc gtctgttcaa tctcactgac
       61 aagtatgccc ctgcggactc ttgtcttacg gattcaacat tgattgacaa ttcgggtaac
      121 tctggcgaca gcactggtaa ctgtggtgtc tacggtcgac tgccatcgaa cagtaactcg
      181 atggtgacgt tcaaggacag tatcgattgc acaggtcctg acgctgattg tagcactgga
      241 ttcggtgctg gcgacatcat ctatatcctg atgaaggacc ccgtcacggg agagatgctc
      301 gattcgatgc taatcacggt gcagtatgtg cctggtggtc agacggcaac gcctctgatg
      361 caatacactg gaacgaccag cccagcgaga ctctcctgag tttcgcggcc ggaacaccgg
      421 atcgggggct ttggcccccg gtccaatccg gaggcgatgg gactaagtca gcgttagcga
      481 agcgtacagc catgtcagca gtcaaggcgg tcgccttcga ttgcgatggt gttcttgctg
      541 acgcgggttc atcttgggcc gttatccaca gccattttgg tacaggggat ccatccctcc
      601 ttcaggcgtt cctgaacaag gagctgaccg atgaggagtt catgcgagaa gatattcgac
      661 tctggaaaga tgttcaacca cgtatccatc gcgatgagtt gttccgttgc tacagcggtg
      721 ttcgacttat gggtggtgca cgtgaagtag tgtcggaact caaggagaga ggcatccatg
      781 tggtgattat ctctgcaggt gttgatctct tcgtgtcgac gattgctaga atgttaaagg
      841 tcgacgattg ggcagcgaac gggttcgaat atgacggtca aggatacctt ctcgatgaag
      901 ggatttgccg cgtatcggcg tggaacaagg gtgagatggt atcgaaactc catcgtattc
      961 ttggtattca tccatctgag attgtgagtg tcggtgacaa tagcatggat ctttccatgc
     1021 agattgaagg gtctcgtttt atcggtttca atcccgccag agacgaggca catgctgcat
     1081 tcaaagatgc gggggtacct gtagttctag gtacggatct tcgtgctatc tggcctaatt
     1141 tgttcccagg ggaaactctt ggcgcgtaga ggtggtatgt ttgctaagga acgccacgcc
     1201 gttcatcctt gttatcctcc tcctcttacc tggatgtgtg agtcctgata gttcaattga
     1261 ggaaacggat actgaaaccg tatcactagt cgtatggcac tcctttgcta cagagagtaa
     1321 agaactggcc acgttcgagt cacaaatcgt tcgcttcatg gcctctaacc cgggggtgga
     1381 ggtagaaaca tcggctattc cgttcagtga agcagcgcgg caattcatga ttgcagcaca
     1441 aggaggagag gcgcctgatg tagtccgtct ttcttcggat caacttggag agattggcga
     1501 agtgcgtgtt ggagggcaac ctctcttaga ggatttgagg cctcatctta cacctcttga
     1561 acgttcgaag ttcgatgcaa gagcgcttaa tgcgatgaaa tatgaggggg atcttctcgg
     1621 tatccctgca agccaggact gtctaagttt gattttcaac ccacttcttt ttgatgcggc
     1681 tggagtcgat tatccatcgg aggattggac gctaaacgat atggtttcag cagcatctca
     1741 attgactcaa ggggatgtgc acggcctcgc aatgcctgta aagaatgctt actggtggtt
     1801 tggtttccaa gccggatatg gtggttcctt attcgatgag aatgggactc caaccttgga
     1861 ttctaatggt tcagcagaag ccatggattg gatgatcgat cttgagatga ctcatggagt
     1921 agtccaaacc gggactcaat ctgaatcgat gaagacacaa ttcctcagtt ccaaggcagc
     1981 catggttgtc gatggacctt ggaactgggc cacatatgag gcgggtagga ttccattgca
     2041 gcagtctata ctaccaattg tggattctac gggggagcga gtatctcctc tcgttacata
     2101 caagggttgg tcggtttcga agcaatcatc tcagaaggag tggtcagttc gtcttgcgct
     2161 acatctttcg tcaagcgaat cacaacgtga attcgcctta gagacctaca cgatgcctac
     2221 acatgtcgac gtatacgttg atccggaggt ggctcagaac tccgtcatat ctgggtttct
     2281 tgatcagtta atggtaggat ttcctgcccc tacaacagaa gcgatgtcaa tggtctatga
     2341 cccactaggt accgcattcg agaacgtcta ctcaggtgaa ttggatgcta ctacggcgtt
     2401 ggtagcagct gatgcagcct tggaatcgga tttggagggg agcggatgaa acgtattcta
     2461 atcctcctta tttttccgat tcttctcggt attgtttctg ctggttctgt gaatcagatt
     2521 gagttagacg gctctgtagg ctatcgtcaa gtaggcatcg agatggcact ttctgaacca
     2581 gctacgaacg gaacctacta tgagattcgg atgaatggtt ctgagttttc tagaactgag
     2641 gattctctac ttcattcggt aattattgta ggcgaaacag cggatttgat gcaacctgaa
     2701 atgggtgatt ggtacgatga ttgtcattat ggtataggcg acgatatcat tgtccctatt
     2761 catcgtaaat cagatggtag cggcgttgta ccaaatggta caatatcgat tggctgcact
     2821 ctcactggca tcccttcagg acaagaatac tacttcgcag tactgacaat ctattctaat
     2881 ggtactgagg taatttcgcc tgtaatgttg agtagttcaa caacagagga tacgttggcg
     2941 gctcctctca agacatcccc ttatctcttt gctattggct cgatttcgtt gagcctcatc
     3001 gcacttcttt acggtctgcg ctggttggat tatagggatg gccgtaccac atctaaaggg
     3061 gctcacctct acattgcacc tgctttactt tcgctcgcag tattgacctt ctatcctgta
     3121 atctacggta tgtggctcgc tctaactgat gcagatcaat cccgtttggg tgagcatgtc
     3181 tacgttgggc ttgagaactt cttcacagta ttttccactt ctggatttct tcgtgtgact
     3241 gtcttcactc tgctgtggac cgtagtcaat gttgtatctc acattggttt tggactcctt
     3301 cttgccctcg cactcaacaa gagtggtttg cgtgggaaga cgatgtatcg cacgcttctc
     3361 cttttaccgt gggcaattcc atcgtacatt acggtcctcg tatggagggg catgttcgaa
     3421 ccggctgggg cgataaacga ccttcttgga acggatctga atctccttgc ggatgcgaac
     3481 ggcgcccgat ttgctgttat tctagtcaat atctggctcg gaattccatt catgatgatg
     3541 tctatctcag gcgcccttca agctctacca aaggatatgt atgaggcagc agaggtcgat
     3601 gggattggaa ctcttggtca gtttaggcac cttactctcc cgaatctgag aagtgccctt
     3661 gtccccttgt ctctgctcgg attcatctgg acgttcaata tgttcaatgt catctacctc
     3721 atgactgacg gcggtccgaa tctggatttt gatggccctg gttcgacgga catcctaatc
     3781 acatatgtgt acgatgttgc tttccgtgat ggcgcatatg gcgttgctgc tgcttggtca
     3841 gtagtgatat tcgtcatgct tgtcgtcttt tcttggacat acatgaagcg gacaaatgct
     3901 acggaggcag tcacatgagt tctatggatt ctatacctcg tgcgtcaaag tccgatcttg
     3961 ctcgacgatg gtacgttcca caagagattc agagccttcg ggcatactac gcagttgtta
     4021 tcttcgtagc atcgctatca gtagcccttt ccactatgag gggaaatgaa gacgcaatat
     4081 attcgtcaat gtgtatcgtt ctcgtccatc ttgtagtcct tctcttgttg aggcagttgg
     4141 atcatggaac gaagaatatc cgtgatggga tcttcgcaat ctctggaatc ggcttattcc
     4201 tctcaattct ccatcatttg gatggacctg gtctctggat agatatctgg tttacgactt
     4261 ggacagctgt tcctttcctt cttgttcctg ttgctgggtc aatgccgatg gtaactctct
     4321 gggtgtccgg tcgattgaca gtcaaggcgg ctgaacttgg ccttagaatg aatagggtga
     4381 tggctgagaa gcacagccat gcgttgcatc acctagttct cctccatgca gtggctatag
     4441 ttgcccttcc tcttctttgg attctggatg tcgctgtatc tcctgggaac tccttaggag
     4501 ggggattcat ggatgaggtc actggggagc acttcgagaa actggtatct tcagagtcgt
     4561 tctggttatg gactcgaaat tcattcatcg tttctatcgg aactaccctt ctgggcctgg
     4621 cactagcaat tcctgctgga tatgctttca gtcgttttcg ctttcgtggg cgtgatccag
     4681 cgatgtttgc cttcctcctt gtccaaatgt tccctggcgt cattattctt gttccctact
     4741 tccttgtaat gaaggcactc gggctgctga acacttccct cggcttgatt ctggcctatt
     4801 cagtcacagc cctacctctt tgcgtctgga tgctgaaggg tttctttgac acagtcccta
     4861 gggagcttga agaggccgct ctcgtagatg gctgcagtca gacacaggtt ttctggcgaa
     4921 tcgttctacc tctctcttta cccgcagttg cagtcaccgc gttgttctca tttcttgcag
     4981 catggaatga attcctcctt gctctcactt tcaacacgag tgaagagatg tacactctgc
     5041 cagtcggcct cgcttccctc atatcatcta ctggccaagc atggggtgac ttcgcagcag
     5101 cctctttgtt ggttagtttg ccagtggttg ttctgttcat cgcgttccaa cgcttcttaa
     5161 tcgaaggttt gagtgcgggt ggagtgaagg ggtgatcaaa tggtgaatgt aatctacaga
     5221 ggagtaacga aacggtatga taatggcttc atggccgtcg ataatctaga tctcgagatt
     5281 gatgatggag aattcctcgt tcttctgggg ccttctggtt gtggaaagtc tactacattg
     5341 cgcatgcttg ccggtcttga ggaggtgact ggaggtgatg tgctaattgg tggtgctcga
     5401 gtcaacgatt tgccaccagg tgcacgaggg attgggatgg tgttccaatc ctatgcgctt
     5461 tatccgcaga tgacagttaa ggggaacttg tcctttg
//
LOCUS       DUKB01000229           16144 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_96480, whole genome shotgun sequence.
ACCESSION   DUKB01000229 DUKB01000000
VERSION     DUKB01000229.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 16144)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 16144)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16144
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_96480"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..1947
                     /locus_tag="HA345_07495"
     CDS             <1..1947
                     /locus_tag="HA345_07495"
                     /inference="COORDINATES: protein motif:HMM:NF012343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85238.1"
                     /translation="WLVNWTSPSSGSSTFTLAVNSVNGDGQASPDDAWNLMAITVAGP
                     STGAAAEELQSADPFVVLVTLIIVSAFLLATVILYTFYRVSPDGFNWESFAPWIIEWL
                     TSTDHKKVGTLYFLAGFFFLGVGGIMALLIRIQLAVPGNDFLTQDQYNAFFTMHGTTM
                     IFLAAMPLINGLANWLIPLQIGAHDLALPRINAMSFWLQPFAAILIFTGVFSGQAADV
                     GWTGYAPYIVSETAHTGTTLWAAGQIMLVASSTLTGINFLATICGMRAPGMGWMQMPL
                     FTWSIFIANLMLFLSIPAWGVGLIQVYLDRTIGTAFYHVASGGDPLLWSHLFWYFGHP
                     EVYVVIVPAFGVISEVLATSARRSVFGYRSMVYAMAGIGVVAFIVYGHHMFTSGMSPT
                     LRFVTMLTTMLVAVPTGIKIFNWLKTMHKGSLVYRTHTLWALGFLVTFTLGGISGMFF
                     PSLAMDTHLHETYFVVAHFHYVFVGGTVFGVFSAVYYWFPKMSGRMMDEKWGLLHFLT
                     GFISFNGIFWPMHKLGVLGMARRHHTWFITTDDYANIPAEMASWNLFITACAFLFFFS
                     NFILVGNMIKTIVSGKKAPADPWGGWSFEWMCSSPPPTPSFDPHNPPVLRDANEHIAS
                     EPTRLAKWFESLMMAEEDDSEVSH"
     gene            1944..3098
                     /locus_tag="HA345_07500"
     CDS             1944..3098
                     /locus_tag="HA345_07500"
                     /inference="COORDINATES: protein motif:HMM:NF012720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-copper oxidase subunit III"
                     /protein_id="HIH85239.1"
                     /translation="MSADYGHDDHDHHASPWGPHDWSHGAPHNSFAPLIMSAGFAMFL
                     YGFAHVFIGGEVADLGALSGVMLGLIIITIGLLVWWRQDMSADGVYEPKATGAPFRNI
                     DIRKVSMWIFLMSEMMVFTSLFSTYIRYRLGIQNCGDVFLSGEWVEGTSVVCFEPAAH
                     LIASSWFHLAPGAVNTFALIISSFTIVLALKTAKMSDKKYADKYEIDMESVQKHRSRK
                     VAMFLGSTLFLATLFLTLKMIEWFIGFPTPGPLTDLNHGHSEIASLYTEGYTIHANSY
                     QHYAYDTSYHDGHEIPHDSALYSMMQAGTHPGGVMMADIRVGASTFFVTTGTHGVHVL
                     AGMIGLSYMTFKGLRGGYGPSNAVSIEYFGLYWHFVDLVWVLVFPFFYLF"
     gene            3110..3439
                     /locus_tag="HA345_07505"
     CDS             3110..3439
                     /locus_tag="HA345_07505"
                     /inference="COORDINATES: protein motif:HMM:NF015582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase subunit IV family protein"
                     /protein_id="HIH85240.1"
                     /translation="MAHYTILGKDPYWMNFWGLMILTAIEVAAVGVELGDTITMSILI
                     GIAIPKFIMIAAIFMHLYGDADSKILTMTALFPAFFIIVMVFFIGLTSPGSATELPAW
                     CRPGYWT"
     gene            3484..3566
                     /locus_tag="HA345_07510"
     tRNA            3484..3566
                     /locus_tag="HA345_07510"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3518..3520,aa:Ser,seq:tga)
     gene            3617..5137
                     /locus_tag="HA345_07515"
     CDS             3617..5137
                     /locus_tag="HA345_07515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85241.1"
                     /translation="MGVRRTGPALIVLMLSLTLVGCLAAAPAEWGTGQGMVSVEMSDD
                     GTSVTIHERLSSDSNNDIVGVDVPVIGCNTNENGTIPQKSQDVTAADHGGEPIRIEGW
                     LATSKYFPDDEGPSIQAIIVDVMPIEEAQDTKGVERDPGQQVPGIQDKRWATPLYAEA
                     QFGQDYDAVEEKRGWALIGIIPGNENVLDGMAGLQEWNRPVALEGYMIHGSVGGTVTI
                     PSGSSVQDCELSSNTRFAAHMVITSIEIGGVTASESEAYSMGSIPLIGGPLYLMIVLI
                     GGGAGAFGTFTYASIQIRTAASKQAATLMSEKQIKAAGSVAKELKKHKKEVESINKDR
                     EKSESVGVVDDTSVKKVEIKEFDISATLDGPADSVEALNSVSRTPGAGVIQTEASIEM
                     ADKLREVMESAMEETSSPSSGPSGRQMGGGVTGSGGPGSRRTMSSSTSSNEIVTEDES
                     QPEPVKRSPPVKRKRAVRTPKEEIIDPEPEEEPETRVDTREGPSISDDDEFSDFSF"
     gene            complement(5138..6175)
                     /locus_tag="HA345_07520"
     CDS             complement(5138..6175)
                     /locus_tag="HA345_07520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HIH85242.1"
                     /translation="MGDSVDRLIFEADTSSKKRSGVHRPIFAPFFTQPAIDVSIPSKV
                     HLLVNPYSGRKKGLLVGQEAERLLIEAGVVVDVHHSEYASHLVEIAASLDLSDGDCIA
                     VVGGDGSLSEAITGWMRTKPTTTPIFAVIPAGTGNSQGTELGISGVDDGVSRILRGRT
                     QAIDLAEVNLRSGNRKDPGPEMTWYSHNLVTWGLGVDSVVLAEKLRWMGPIRYDVGIV
                     MMMLVNRRRRATLTLDGHRMEGDYTLFLIQNTQLGGSGLKLGPGASIDDGEMDLGILQ
                     RMSRPSLLKAFGMLQKEGRHVFHPSVIYHRFKHLRIETNEPMAINIDGELIGCTPLDM
                     QVMPQAIRLIV"
     gene            6244..7383
                     /gene="ribD"
                     /locus_tag="HA345_07525"
     CDS             6244..7383
                     /gene="ribD"
                     /locus_tag="HA345_07525"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HIH85243.1"
                     /translation="MMDAAPPYNMEPEVRFMARAIEIAERGLARVSPNPPVGCVLVRD
                     GRIIAEGWHDRIGNLHAEQAAIADAEERGEPTEGATAYVTLEPCNHFGRTPPCTQALL
                     WAGIDSVIIAAKDPNPNVRGHGIRVLEEAGIEVRYGMLELEAEKQMQAFMRWCHHRRP
                     IVTLKMAVDAKNRVDTDSGPSARFTTEKSLNFAHALRRQTDAILVGSGTVIRDNPSLT
                     VRHIPLDGVDQPLRIVLDRRGRVSSDAKVWNREAPSLHIHGLEDVEEKMDVESIAIAD
                     LNEEKGLHDLLDLLGDRGIQELLIEGGPQIWTSFLDAGLVDRLIHIRSREDIGNGPKM
                     MLDEVYLDSNNLLLHSESEDTGDWIQIYTKSNFKPPNSAWPYPSS"
     gene            7410..7483
                     /locus_tag="HA345_07530"
     tRNA            7410..7483
                     /locus_tag="HA345_07530"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7445..7447,aa:Arg,seq:tcg)
     gene            complement(7487..8608)
                     /locus_tag="HA345_07535"
     CDS             complement(7487..8608)
                     /locus_tag="HA345_07535"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013347.1,HMM:NF014923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85244.1"
                     /translation="MATPPRSMLVGSGWHPPLFRSEAGSFAEIQDVIHPRVVIVTGIP
                     NISESSLIDRLLHPFSQSKERPSAESIASWFNDTHPSINQTVMVRVHRLGFIEDENTK
                     VLEREVGALLHNQGRSIDLDSPDLTLMIHPCGPATEPTHPESEYVSEHGWIWGVVAQK
                     GQGGGIFASRSATDRAYFRPVSLDPRLARTMVNLTRILGEKPSAIIDPFCGTGGILIE
                     AALSEIHVFGSDLDVRMVEGSRQNLEQIEIDPSLYKLFTHDATQLEELWPGMEGSAFV
                     FDPPYGRNSWSDGEGMDLFQRTVQSCQAISTGCFVILLPISPDKSELIRSGNVVLALD
                     GEGDVFSRILSEQNLRIDVAHSIHVHRSLARLLLRLQPI"
     gene            8626..10287
                     /locus_tag="HA345_07540"
     CDS             8626..10287
                     /locus_tag="HA345_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85245.1"
                     /translation="MAFNPITREGLQQPMVGASGRQRTALSLLLIIVFCVPLFLSGIQ
                     AQSEDPRILSHERNTLYFYGNNDGGASSAWPMWNHAQASDTDSDDSVSESNAFVPGDP
                     NNGGGTREFTFDGKVSNTNVTEINQEVTITGTLRLDIFCQQGSCSKDVTVYLRKGGVD
                     TTSITISPENEGGDTYVFEFFHNIKEVKAGETIGLRIQFTKPSGVGDGYQLYLGQNNF
                     QMDIPVIAPDTSDIGDVLLADGANWETPYADAGLGFQSQTSSTVGIFLPILLGILLLA
                     GMICGIVFTPGMPGITAAAVLACLSLMGPVVAAPIVGYLDIAHHSDVDMEPNVYTVDQ
                     FAALEASSGSFLTDFRAGDEFEIWVPLDGREVYSKSIQHNGRNAILWGFGHQEHNEIL
                     GNPEVTTVAGREAIQLYFSSIIQYTDGAECEGQDPNGTESIAGEDFDPCDEFDLTKSA
                     GVMMRVILAQDGDAIRPINNVNLTLTDGSPRNAVVWTDAEPMGMPPSWSMYSMAGMIP
                     TLGCLGFGLFSLMKERGGSISNDDDDEFYEDDDDFDDDFIDDLEL"
     gene            10297..11307
                     /locus_tag="HA345_07545"
     CDS             10297..11307
                     /locus_tag="HA345_07545"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012954.1,HMM:NF013063.1"
                     /note="FEN-1; Rad2; similar to eukaryotic enzymes;
                     endonuclease that cleave the 5'overhanging flap structure
                     that is generated by displacement synthesis when DNA
                     polymerase encounters the 5'end of a downstream Okazaki
                     fragment; as 5'endo-/exonuclease and
                     5'pseudo-Y-endonuclease activities; cleaves the junction
                     between single and double-stranded regions of flap DNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap structure-specific endonuclease"
                     /protein_id="HIH85246.1"
                     /translation="MGCNLKDLVRPESIDLNDLAGEKVAVDVFLSAYQFITAMTGEDG
                     RPLSRDGKPVAHIMGFLDRATTLIASGIDPVFVFDGRPHNLKRDTLNERRERKEGAKN
                     RWKAAIEDGDMKAAKKLGPQIEEYTREMVQETKDLFDTLGVTWIEAPMEAEGAAAVRA
                     RRGEVHAVATQDWDALLYGSPIMIRNLMSHGTRKFGRTLTAERIVLSDVLEEHDITQE
                     QLVDLGIMIGTDFHPGFRGIGPKTGLKLIKAHGSLEAVAELKGHIVPDDIEDIRDLFH
                     NHPIHANVNLPESGRAVEERIRHFVQKERGFSEGRTERALERLASVGRLRSESKPTLF
                     DF"
     gene            11370..12917
                     /locus_tag="HA345_07550"
     CDS             11370..12917
                     /locus_tag="HA345_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85247.1"
                     /translation="MSSSLSQSSQLWTGLLLLGILLNVLVVFTSNLGLDTHVHMARAA
                     EEDRTGEAMLPWGHTRPIDSMSSDPAYAPITEEGWFEIMPNTETEAHALGLGLMLILC
                     GGAYLVFWKLFGHQAAISTTALISIHPTFIFATGRTFPEVAMAILGLMLVLAILFHRI
                     EPNWKGAIFSGLFSTVTMASILQVKGIPIHFSVAYGLLIAGWHILDSIERMRILTRSP
                     KYVAMVSSIGIGTGILLYGGLFGTGTIGTISEFPERYAFALIIATFDAIGIFALFGMV
                     LWPFLRSTIQRLGSIEDHSIATVTGLITSLATVITIYIAALWTYEAALWNAEWPTVMW
                     TMGNNGRYISMLMLPAILLIHLVGLNNPSAETQSNPQSKKKALLLGIILILPLSILTA
                     VHGQTMWTDDAGESMIDLGLMEGDDFLFISEATLGMHWLYTFRIEVDPNGENDIIGHW
                     RDTDSGWIEDLSRSEPLPNRGDLKNVRFIVLSPGINTIPNGWNVVDEGKAPWMNGGGT
                     WQVLSQS"
     gene            complement(12908..13417)
                     /locus_tag="HA345_07555"
     CDS             complement(12908..13417)
                     /locus_tag="HA345_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85248.1"
                     /translation="MFGALLRIFSYGSMAVKGAKKARGAMSSEQAEAAKAIVKDPEGW
                     GDSLSSGWDKVKEESFELKDAFLTLYKIQIGRRTTKKERKNAVEKFAMAGTALPPLRV
                     FSLPGAEMFLGVAAFVMPFRVIPDSMLPSILRSHDYVPDPSKKRLRWFRKEKETLAEI
                     IEVDVTTQD"
     gene            complement(13460..13639)
                     /locus_tag="HA345_07560"
     CDS             complement(13460..13639)
                     /locus_tag="HA345_07560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85249.1"
                     /translation="MPVTGDIESLIQNMNDALADAAKHDRGIDAASRRLRKKLSEIAK
                     TCKDVRAKIQDERGE"
     gene            complement(13743..>16144)
                     /gene="aceE"
                     /locus_tag="HA345_07565"
     CDS             complement(13743..>16144)
                     /gene="aceE"
                     /locus_tag="HA345_07565"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HIH85250.1"
                     /translation="RWNAMMMVTRANKNFDGIGGHISTYASIATLWEVGLNHIFRGKD
                     GDGHGDHVYWQGHASPGLYARSWMEGRFTIDKIEHFRREAFTDGLSSYPHPRLMPEYW
                     EYPTVSMGLGAMTAIRQARFNRYLRDRGVVDTDSSRVWYFMGDGESDEPESLSELTLA
                     SREGLDNLTIIVNCNLQRLDGPVRGNTKIVQELASRFTGAGWNVIKCLWGRMWDPLFA
                     ADVQGLLATRLASLTDGDEQRLMTASGEVIRKELFNSPDLASLVDHLSDSELEVLTDD
                     MGGHDLHRIYSAYKAAIACKGRPTVILARSIKGYGLGPTFAGRNATHGKKKADHSALH
                     FMRDKIGLTLSDEELEKLPYILPEDRLDEVAYLRERRESLDGFLPERRPHPLDLPLPP
                     VETFSEFDAGSQNGQAVSTTMAFVRLLRNLTRVDGIGSRIVPIVPDEARTFGMDPLFS
                     QLGIYSPSGQLYTPVDYEVLMRYKESKSGQILEEGINEAGAMSTFIASGTSYATQGTP
                     TIPFYIFYSMFGFQRIGDLVWSAADSRCRGFLIGATSGRTTLNGEGLQHQDGHSLLLA
                     MSNPAVRAYDPAYAYEMATIIRHGINEMYVDESDVMYYITAYNENLEMPSKPEQADEG
                     ILRGLHRIETEDDAQVRLLGSGSILPQVEIAATKLRSLGISTEVYSATSYGELRREAM
                     ESEDWNRRHPSQAAKSSWVQQQLDDKVPVTVAVSDNIAAVPDLIRPWVSGIYHVLGTD
                     GFGRSDTREALRRFYGVDSDSIVLDTLSALVRSGLIEAPLYSEFLASIDMEERDDITK
                     I"
BASE COUNT         4267 a         3878 c         3839 g         4160 t
ORIGIN      
        1 tggttagtca actggacatc gccgtcaagc ggatcaagca ctttcacact tgcagtcaat
       61 tctgttaatg gagatgggca agcaagcccc gatgacgctt ggaatctaat ggccattaca
      121 gttgcaggac cctctactgg agcagcggcc gaggaattac aatctgcaga tccctttgtc
      181 gtacttgtaa cactcatcat cgtgtctgca ttcttactcg ccaccgtcat cctctacaca
      241 ttctatcgag ttagcccgga cggatttaac tgggaaagtt tcgccccatg gattattgag
      301 tggttaacat ccacggatca caagaaagtt gggaccctct acttcctagc aggattcttc
      361 ttcctaggtg taggaggaat catggctctt ctaatccgaa tccaacttgc tgtcccaggc
      421 aatgatttcc tcactcaaga ccaatacaat gcattcttca cgatgcatgg gacgacgatg
      481 attttcttgg ctgctatgcc attaatcaat ggattagcga attggctaat cccactacaa
      541 ataggagccc atgaccttgc tcttccacga atcaacgcga tgtctttctg gctacaacca
      601 ttcgcagcta tactgatttt cacaggtgta ttcagtgggc aagctgccga tgtaggatgg
      661 actggatacg cgccttacat tgtctcagaa accgcgcata ctggaactac actatgggct
      721 gctggacaaa ttatgttggt agcatcgtct acacttactg gaatcaattt cctagcaacg
      781 atttgtggca tgagagcccc gggtatgggt tggatgcaga tgccgttgtt cacttggtct
      841 atcttcatag ccaatctgat gctcttcctt tccatcccag cttggggtgt tggacttatt
      901 caggtctatc tagatcggac cattggcact gcattctacc atgttgcatc cggaggagac
      961 ccgcttctgt ggagtcatct attctggtac ttcggccatc cagaggtgta cgtagtgatt
     1021 gttccagcct tcggtgtaat ctctgaagtt cttgccacct ctgcaaggcg ctccgtcttt
     1081 ggatatcggt cgatggtcta cgcaatggca ggcatcggtg tagtggcctt catcgtatat
     1141 ggccaccata tgttcacctc tggaatgtcc cctaccctcc gcttcgtaac catgctcaca
     1201 acgatgcttg tcgctgtgcc aactggaatc aagatattca attggctcaa gacaatgcac
     1261 aaaggatctc ttgtctatcg gactcatact ctatgggcac taggattcct cgtaacattc
     1321 accctcggtg gaatctcagg gatgttcttc ccctcgctag ccatggatac ccatctacac
     1381 gagacatact tcgtcgttgc acatttccat tacgtattcg taggtggaac tgtattcggc
     1441 gtgttctctg ctgtatacta ctggttccct aagatgtcag ggcggatgat ggacgaaaag
     1501 tggggactcc tacacttcct aaccggattt atttccttca atggtatctt ttggccgatg
     1561 cacaagcttg gtgtccttgg aatggctcga cgtcaccaca catggttcat tacaacggac
     1621 gattacgcaa atatcccagc agaaatggca tcttggaact tattcatcac tgcctgcgct
     1681 ttcctcttct tcttctcaaa cttcatactc gttgggaata tgattaagac gatagtgtcc
     1741 ggcaagaaag ctccagctga tccatgggga ggttggtcct ttgagtggat gtgttcctcg
     1801 cccccgccaa ctccttcgtt cgacccacac aatccaccag ttcttcgaga tgcgaacgaa
     1861 catattgcat ccgagcctac acggcttgca aaatggtttg aaagcctcat gatggcagaa
     1921 gaagacgatt cggaggtgag tcattgagcg cagattacgg ccatgatgat catgaccacc
     1981 atgcctcccc ctgggggcct catgattgga gtcacggtgc accgcacaac tcgtttgcac
     2041 cgctaatcat gagcgctggt tttgcgatgt tcctatacgg gtttgcccat gtcttcatcg
     2101 gtggagaagt tgctgatctt ggcgcactta gcggtgtaat gcttggccta atcattatca
     2161 caataggctt gctcgtctgg tggcggcaag atatgtcagc agatggagta tacgaaccaa
     2221 aggcaactgg tgcaccattc cgtaatatcg atattcgcaa ggtttcgatg tggattttct
     2281 tgatgtccga gatgatggtc ttcaccagtc tattcagtac ctatatccgc tatcgtctag
     2341 gcatccaaaa ctgtggagac gtcttcctct ctggggaatg ggtcgaaggt acgtccgtgg
     2401 tatgctttga gcccgcagca catctaattg caagcagttg gttccatctc gcaccaggag
     2461 cagtgaacac atttgctttg attatctcat cattcactat tgtccttgca ctcaagactg
     2521 cgaagatgag cgacaaaaag tacgctgata agtatgaaat tgatatggaa agtgtccaga
     2581 agcatcgaag tcgcaaggtt gctatgttcc ttggctctac cctcttcctc gcaacactct
     2641 tcctaacact gaagatgatt gaatggttca ttggtttccc tactcctggt cctctgactg
     2701 acctaaatca cggccactca gaaattgcct cactttacac tgaaggatac actatccatg
     2761 caaattcata ccagcattac gcgtacgata catcatatca cgatggccac gaaatccctc
     2821 acgacagcgc cctctacagc atgatgcaag caggaacgca tccaggtgga gtgatgatgg
     2881 cggatatccg agttggtgct tcgaccttct tcgtgacaac aggcacccac ggagtacacg
     2941 tcctcgcagg aatgattgga ctatcctaca tgactttcaa gggactccgt ggaggctacg
     3001 gtccttctaa tgctgtttcg attgaatact tcggccttta ctggcacttc gttgacctag
     3061 tatgggtgct cgtcttccca ttcttctatc tgttttgagg tgatgaaata tggcacacta
     3121 cacgatttta ggaaaagatc cctactggat gaacttctgg ggcctgatga tacttactgc
     3181 aattgaggtg gctgctgtcg gtgttgaatt aggcgacact attacgatga gtattcttat
     3241 cggaatcgct atcccgaagt tcatcatgat tgcagcaatt ttcatgcacc tatacggcga
     3301 tgcggattcc aaaatcctca caatgacagc gctcttcccg gcgttcttca tcatcgtcat
     3361 ggttttcttc atcggcctaa ctagcccggg atccgcaacc gagctccctg catggtgtcg
     3421 acccggatat tggacctgaa atgcacaaag cgtgaaatcc accttaggat tcgaacgcct
     3481 atagctgacg tcgcatagcc tggtattgcg ccggatttga aatccggtgt cccttggact
     3541 cgggagttcg aatctctccg tcagcgcctc tcttcaactc gggaaatcta ttcaacgctg
     3601 aggttgctcc gtaaccatgg gcgtgcgcag aacgggaccc gccctcatcg tcctcatgct
     3661 atcattgacc cttgttggat gccttgctgc tgctccagca gaatggggaa cagggcaagg
     3721 aatggtttcc gtagaaatgt ccgatgatgg aacaagtgtg accattcacg aacgtctctc
     3781 tagtgactcc aataatgaca tcgttggagt cgacgttcca gtcattggct gtaacaccaa
     3841 tgaaaatggt actattcctc agaaatcaca agatgtgaca gcggccgacc acggtggaga
     3901 accgattaga atcgaaggat ggcttgctac atcgaagtat tttccagatg acgaagggcc
     3961 ttcaattcaa gcaatcatcg tcgatgtgat gccaattgaa gaagcacagg atacgaaagg
     4021 ggtggagcga gatcctggac aacaagttcc aggaatccaa gacaagcgat gggctactcc
     4081 tctctatgct gaggctcaat tcgggcagga ctacgacgcc gtcgaagaaa agcgcggttg
     4141 ggccctgatt ggtattattc caggtaatga gaatgtgctc gatggaatgg ctggactaca
     4201 agaatggaat cgcccagttg ccttagaggg ttacatgatc cacggatcgg ttggaggtac
     4261 cgtgactatt ccatcaggtt catccgtaca ggattgtgaa ttgagttcta acactcgatt
     4321 tgctgctcac atggtaatca ccagcatcga aatcggaggc gtgactgcat cagaatccga
     4381 ggcatactct atgggaagta tacctctcat cggcggccca ctctacctaa tgatcgtcct
     4441 tatcggaggt ggggcgggtg ctttcgggac atttacctac gcttcaatcc agattcgcac
     4501 tgctgcatcc aaacaagcag ctacgctgat gtcggagaag cagatcaaag cagcaggaag
     4561 tgttgctaag gaactcaaga agcacaagaa ggaagttgag agtatcaaca aagacagaga
     4621 aaaatccgaa tctgtcggcg tagttgacga caccagtgtg aagaaggtcg aaatcaaaga
     4681 atttgatatc tcagcaacac tagatggacc cgcagattct gtggaggcgt tgaacagtgt
     4741 ctcacgaacc cctggtgcag gagtaatcca aaccgaggca tcaatcgaga tggccgacaa
     4801 attacgcgaa gtcatggaat ccgcgatgga agaaacaagt tctccatctt ctggtccaag
     4861 tgggcgtcaa atgggtggag gcgtaactgg cagtggtggc ccaggaagtc gacgaaccat
     4921 gtcgagttcg actagttcca atgagattgt tactgaggat gaatcacaac ctgagccagt
     4981 aaagcgtagc ccaccggtca agaggaagcg ggcagttcgc acaccaaagg aagaaatcat
     5041 cgatcctgaa ccagaagaag aaccagaaac gcgagtcgac actcgtgaag gtccgagtat
     5101 ctcagatgat gatgaattct cagacttcag tttctaatta gacgattaga cgtattgcct
     5161 gtggcatgac ttgcatatcc agaggtgtac atccaatgag ttcaccatca atgttgattg
     5221 ccattggttc attcgtctcg attcttagat gtttgaatcg gtgatagata acgctgggat
     5281 ggaaaacatg tctcccctct ttctggagca taccaaatgc cttcagcaac gatgggcgac
     5341 tcatcctctg taatatgcca agatccatct caccatcatc aattgatgca cctggtccga
     5401 gtttcaatcc agaaccacca agctgggtat tctgaatcaa gaaaagagtg tagtcaccct
     5461 ccattcgatg accatcaaga gtcaatgtgg cacgacgacg acgattgaca agcatcatca
     5521 tgacaattcc tacatcgtaa cgtattggac ccatccaacg taacttctct gcgagaacga
     5581 ctgaatctac ccccaacccc catgttacga gattatgact ataccatgtc atctcagggc
     5641 ctgggtcctt acgattccct gatcgtagat tcacctcggc aaggtcaatc gcttgagtac
     5701 ggcctcgaag aattctagat acaccatcat ctacccctga gattccgagt tctgttcctt
     5761 gagagttccc ggttccagct gggatgactg cgaagattgg tgtcgttgtt ggcttagttc
     5821 tcatccaacc agtaattgct tcagaaaggc ttccatcacc accaaccaca gcaatacaat
     5881 ctccatcact caaatctaga gatgcggcaa tctcgacaag atggcttgca tattctgaat
     5941 gatgtacgtc aacaactact cctgcctcaa tgaggagacg ttcggcttct tgaccaacca
     6001 agagaccttt cttcctacca gaatatggat tgacaaggag atgcactttg gaggggattg
     6061 acacatcaat tgctggctga gtgaaaaaag gagcgaagat tggacgatgg acgccgctac
     6121 gctttttgga agaggtgtct gcttcgaaga tcaaacgatc aacggaatcg cccatgaatt
     6181 gagagagagg gcccacaaca tgaaccctgc cctgaactat accataattg aagcgaagcc
     6241 atcatgatgg atgcagcccc cccatacaac atggagccag aggtgcggtt catggcaaga
     6301 gccatcgaga ttgcagaacg tggtctcgcg cgagtttctc caaatccacc agtaggttgc
     6361 gtcctagtac gagatgggcg gattatcgca gaagggtggc acgatcgtat tggtaacttg
     6421 catgccgaac aagcagcaat cgcagatgca gaagagcgtg gagagccaac ggaaggagcc
     6481 accgcatacg tgacactgga accatgcaat cactttggac gaacaccccc ttgcactcag
     6541 gctctgctat gggctggaat tgattcggta ataatcgccg ccaaggaccc gaatcctaac
     6601 gttcgtggcc atggaattag agttctcgaa gaagcaggca tcgaagtccg ttatggcatg
     6661 ttagaattag aagcggaaaa gcaaatgcag gcattcatgc gttggtgtca tcatcgacga
     6721 cccatcgtaa ctctgaagat ggcagtcgat gcaaaaaatc gtgtggacac agattcggga
     6781 ccttctgccc gcttcaccac agaaaaatca ctcaatttcg ctcatgcttt acgacgacag
     6841 acagatgcaa tccttgtcgg ctcagggact gtcatccgtg acaatccatc gctcactgtt
     6901 cgccacatcc ctcttgatgg agttgaccaa ccattacgta tcgttctgga tcgacgaggc
     6961 cgtgtctcat cggatgcaaa ggtctggaat cgagaggcac caagccttca catccatgga
     7021 ttagaggatg ttgaagaaaa aatggatgtc gaatccatag caatcgctga tctcaatgaa
     7081 gagaaaggat tgcacgatct actcgatcta cttggggatc gaggtatcca agaacttctg
     7141 atcgaaggcg gcccccaaat ctggacgagt tttcttgatg caggccttgt agatcgtcta
     7201 atccacatcc gtagtcgtga agatatagga aacggaccaa agatgatgct agatgaagta
     7261 tacttggatt caaacaatct cttactacat tccgaatctg aagacacagg tgattggatt
     7321 caaatctaca caaaatcgaa ctttaagccc ccaaattcag cgtggcccta cccgtcgagt
     7381 tgaaatcaat ccgcccggtc gagaaggctg ggcgattggt gtagtctgga tatcatctgg
     7441 cgcttcggac gctaggacac gggttcgaat cctgtatcgc ccactctcat atcggttgca
     7501 agcgaagtag aagtcgcgct agactccggt ggacatggat ggagtgcgca acatcgatac
     7561 ggaggttttg ttcagagaga atgcgactaa acacgtcgcc ttctccatca agggccaata
     7621 caacatttcc tgatcgaatt aattcagatt tatctggaga aatagggagg agaataacga
     7681 aacaacctgt agagatcgct tggcaggatt ggactgttcg ttgaaagaga tccattcctt
     7741 caccatccga ccaagaattt ctgccatatg gtggatcgaa cacaaaggca gagccttcca
     7801 ttcctggcca gagttcctcc aattgagttg catcatgagt gaacaacttg tacaaagatg
     7861 gatcaatctc aatctgctct agattctgtc gtgaaccttc caccatccgg acatcaagat
     7921 cagagccgaa aacatggatc tcactgagag cggcttcgat gagaatgccc cctgttccac
     7981 aaaatgggtc aatgatggcg cttggttttt cacctaagat tctggtcaga ttaaccatgg
     8041 ttcgtgcaag acggggatca aggctgactg gcctaaaata agctcggtct gttgcactcc
     8101 gtgaagcgaa tattcctcca ccttggccct tttgagcaac tacaccccat atccatccat
     8161 gctcacttac gtattccgat tcaggatgtg tgggctctgt agctgggcca catggatgaa
     8221 tcatcagcgt caaatctgga ctatcgagat caattgatcg tccttgattg tgtaacaatg
     8281 caccaacttc tcgttccaag accttggtat tctcatcctc aatgaagcca agacgatgaa
     8341 ctcgcaccat cactgtttga ttgatactgg ggtgagtatc attgaaccaa gatgctatcg
     8401 attctgctga gggacgttct tttgattgac tgaacggatg gagaaggcga tcaattagag
     8461 atgattcgga aatattcgga attcccgtaa caatcacaac acgagggtgg attacatctt
     8521 ggatttcagc gaaactacct gcttccgaac ggaacaaggg tggatgccaa ccgctcccaa
     8581 ccaacatgga ccgagggggg gtcgccatgg tagttggagg gaccattggc cttcaatcct
     8641 ataacacgcg aaggactcca acagcccatg gtgggcgcat ccggtcgaca gcggacggct
     8701 ttgtccctgc ttctgattat cgtgttctgt gtaccactct tcctttcagg gattcaagcc
     8761 caaagtgaag atccgcgaat tctcagtcat gaaaggaaca ctctctactt ctatggaaac
     8821 aatgacggcg gcgcatcgag tgcatggccc atgtggaatc acgctcaagc atccgataca
     8881 gacagcgatg atagcgtaag tgagagtaat gcattcgtgc caggtgatcc gaacaatggc
     8941 ggagggacta gagaattcac ctttgatgga aaagtgtcta acaccaatgt cactgagatt
     9001 aatcaagaag tgaccattac aggaacactc cgattagata tcttctgtca gcaaggaagt
     9061 tgttccaagg atgttaccgt ttacctccgt aaaggtgggg tcgatactac ctcaatcacg
     9121 atttctcctg agaatgaagg aggagatacc tatgtcttcg aattcttcca taatatcaag
     9181 gaggtgaaag caggggaaac tattggactt cgaattcaat tcacgaagcc atctggagta
     9241 ggtgacgggt atcaactata cttgggccag aataacttcc agatggacat acccgtgatt
     9301 gcacccgata cctcagatat tggtgatgta cttctagcag atggtgccaa ctgggaaact
     9361 ccctatgcag atgcaggtct aggtttccaa agccaaacaa gcagtaccgt tggaatcttt
     9421 cttccaatcc tcttaggaat ccttcttctc gctggaatga tttgtggcat tgtattcacc
     9481 ccagggatgc ctggaattac cgctgctgca gtattggctt gtttgtcact aatggggcct
     9541 gttgttgctg cgccaattgt tggatatctg gatattgcac atcattcaga tgtcgacatg
     9601 gagccgaatg tctacactgt agatcaattc gcagcattag aagctagttc tgggagtttc
     9661 ctgacagatt tccgcgctgg tgatgagttc gaaatttggg tacctcttga tggaagggag
     9721 gtctattcga aatcaatcca acacaatgga agaaatgcta tcctctgggg tttcggtcat
     9781 caagagcata acgaaatcct cgggaatcca gaggttacaa ccgtcgccgg ccgagaagca
     9841 attcaactct acttctcaag catcatccaa tatacagatg gtgcagagtg tgaaggtcaa
     9901 gatcctaatg gaacagaatc cattgcagga gaggatttcg atccctgcga tgagtttgac
     9961 ttgaccaaga gtgctggtgt tatgatgagg gtcatcctag ctcaggatgg cgatgctata
    10021 cgcccaatca acaatgtgaa tctcactcta acagatggca gtccacggaa tgcagtcgtt
    10081 tggaccgatg ctgaacccat gggtatgccg ccaagttgga gtatgtacag tatggccgga
    10141 atgattccta cactcggatg tctaggattt ggattatttt ctctaatgaa ggaacgagga
    10201 ggttccatat cgaatgatga tgatgatgag ttctacgaag atgacgatga cttcgacgac
    10261 gacttcattg atgacctcga actctgaggt gatacgatgg gttgtaacct gaaggattta
    10321 gttcgtcctg aatccattga tttgaatgac cttgcagggg aaaaagtcgc agtggatgtc
    10381 tttctatctg cttaccaatt catcacagcg atgactggag aagatggtcg acctctctcg
    10441 agagatggga agcctgtcgc acatatcatg ggtttcttgg atcgggcaac gacactaatc
    10501 gcctcaggga ttgatccagt cttcgtattt gatggtcggc cccacaacct caaacgagat
    10561 actctgaatg aacgtcggga acgtaaagag ggagcgaaga atcggtggaa ggctgctatt
    10621 gaagatggag acatgaaggc tgcaaagaaa cttgggcctc aaattgaaga atatacgaga
    10681 gagatggttc aggagacgaa ggacctcttc gataccctag gtgtaacttg gattgaagct
    10741 cctatggaag ctgaaggggc tgctgctgtg cgtgcacgcc gtggtgaagt acatgctgtg
    10801 gcaacgcagg actgggatgc cctattgtac ggttcaccga taatgattcg aaatctaatg
    10861 tcccatggta cacgtaaatt tggacggact cttaccgcag aaagaattgt gctaagtgat
    10921 gtgttagaag aacatgatat cacacaagag caattagttg acctcggtat catgattggg
    10981 actgattttc atcccggatt ccgaggtatt ggaccgaaaa caggactcaa actaatcaaa
    11041 gcccatggtt cattggaagc tgtcgccgag ttgaaggggc acatcgttcc cgatgacata
    11101 gaagacattc gtgacctctt tcacaatcat ccaattcatg ctaatgtgaa tcttccagaa
    11161 tccggccgag cagtagaaga gcgtattcgc catttcgttc agaaagaacg aggattctca
    11221 gaggggcgaa cggaacgggc tttggagcgt cttgcatcag tcggtcgcct ccgatcagag
    11281 tcaaagccca cactcttcga tttctgaaca gcgaaacctc attccttgta tcctcacctc
    11341 aaggtttcat gggctcggag gagaggagtg tgtcatcatc tctcagtcaa tcgagtcagt
    11401 tgtggactgg acttcttctc cttggaatct tgctgaatgt tcttgttgtg tttaccagta
    11461 atctcggcct cgacacccat gtccatatgg cccgtgctgc ggaggaagac aggacaggag
    11521 aagcaatgct tccatgggga catacacgtc cgattgattc gatgtctagt gaccctgcat
    11581 acgcacctat cactgaagag gggtggtttg agattatgcc gaacaccgaa actgaggcgc
    11641 atgctcttgg tctcggactt atgctgatcc tgtgtggagg cgcctacctc gtattctgga
    11701 aactctttgg tcatcaagct gcaatttcta ccactgcgtt aatctcaatt catccaacat
    11761 tcatatttgc aactgggcgg acctttccag aagtcgcaat ggcaattcta ggactcatgt
    11821 tggtcttggc catactattc catcggattg aaccaaactg gaaaggggcg atattctcag
    11881 gacttttttc gaccgtgaca atggcgagta tactccaggt caagggtata cccatccact
    11941 tttcggtagc ctatggcttg cttatcgctg gatggcatat actcgatagc atagaacgta
    12001 tgagaatcct gacacgatca ccgaagtacg ttgcaatggt aagcagtatc ggaattggaa
    12061 ctggtatcct cctctacggt ggattatttg gaacggggac tatcggaacg attagtgaat
    12121 ttcctgaacg ctatgcattc gcattgataa tcgcaacttt cgatgctatc ggaatattcg
    12181 cattattcgg aatggtcctc tggccgttct tacgaagtac aatacagagg cttggaagca
    12241 tcgaggatca cagcatagcg actgtcactg gattgattac gagtttagcg actgtaatta
    12301 caatctacat tgctgcactc tggacctatg aagcagcact ctggaatgct gaatggccaa
    12361 cagtaatgtg gacaatgggg aacaacggac gctatatctc gatgcttatg cttcccgcaa
    12421 ttctcctcat acatcttgtc ggactaaaca atccttcagc tgagacacaa tcaaatcctc
    12481 aatcgaaaaa gaaggcacta ctgcttggta tcatcctcat actccccctc tctatcctga
    12541 ccgcagtaca tggccaaacc atgtggactg atgatgctgg agaatccatg attgatctcg
    12601 gcctcatgga gggcgacgac ttcctattta tctccgaagc cacgcttggg atgcattggc
    12661 tctacacctt ccgtatcgaa gtcgacccca acggtgagaa cgacattatt ggacactgga
    12721 gagataccga ttctggatgg attgaggatc tgagtcgaag tgagccattg ccaaatcggg
    12781 gagatttgaa gaatgttcga ttcattgtac tttcacccgg aatcaacacc atcccgaacg
    12841 gttggaatgt ggtagatgaa ggaaaagctc catggatgaa tggtggaggg acttggcagg
    12901 tactaagtca atcctgagta gttacatcaa cttcgataat ctctgccaac gtctccttct
    12961 cttttctaaa ccagcgaaga cgcttcttcg aagggtcagg gacgtaatca tgagaccgaa
    13021 ggatactcgg tagcattgaa tcgggaatca cacgaaatgg catgacaaag gcagctactc
    13081 caaggaacat ctcggcacca ggtaggctga atacacgaag aggaggaagg gcagttcctg
    13141 ccattgcgaa tttttcaacc gcgttcttcc gttccttctt tgttgtccgt cgtccaatct
    13201 ggattttgta aagtgtaaga aaagcatcct tgagttcaaa cgactcttcc ttgaccttgt
    13261 cccaccctga tgaaagagaa tccccccaac cttcaggatc cttgacaatg gccttagcgg
    13321 cctcagcttg ctctgaactc atcgcacccc tcgccttctt agccccctta acggccattg
    13381 agccgtagga gaagatgcgg aggagggctc caaacatgga cgtagatgag gggtctggtc
    13441 tttgtcccta tcgtcgtttt tactcgcctc gttcatcctg gatcttggca cggacgtcct
    13501 tacaggtctt agcaatctca gagagtttct tgcgaaggcg acgacttgct gcgtcaatac
    13561 cgcggtcgtg ctttgcagca tctgcaaggg catcgttcat gttttgaatt aggctctcaa
    13621 tatctccggt tacgggcata aggggtcctg agaattaccc ttcaaaactc ttctcaattt
    13681 aggttcagaa tatcgagtta gaaaccatac catacagggc tgtttatgga ttgaaaatca
    13741 ggtcaaattt tggtgatgtc atcccgttct tccatatcga ttgatgctag aaattcagaa
    13801 taaagagggg cctcaatcaa ccccgatcta accaaggcag atagtgtatc aagaacaatg
    13861 ctgtcagaat caacaccata gaaacgcctc aatgcttcac gtgtatccga acgaccaaaa
    13921 ccgtctgttc cgaggacatg gtaaatgcca ctaacccatg gacgaatcaa atcagggact
    13981 gctgctatgt tatcgctaac tgcaactgta actgggactt tgtcgtctaa ttgctgttga
    14041 acccaacttg atttggctgc ttgacttgga tggcgacgat tccaatcttc agattccatg
    14101 gcctcacgtc gaagttcacc atacgatgtt gcagagtaaa cttcagtgga gattccgaga
    14161 gagcgtagtt ttgttgcagc aatttcaacc tgggggagta tagatcctga accaagaaga
    14221 cgaacttgag catcatcctc tgtctcgata cgatgtaacc ctctcaagat tccttcatcg
    14281 gcctgttcgg gtttggaagg catttccaaa ttttcgttat atgcggtaat gtagtacatt
    14341 acatcagatt catcaacata catctcattt attccatgac gaataattgt cgccatctca
    14401 tatgcgtaag ccggatcata tgcacgtact gctggattag acatagcaag aagaagtgag
    14461 tgcccatcct gatgttgcag gccctctcca ttgagcgttg ttcgtcccga agttgcacct
    14521 attaggaagc cgcggcaacg gctatcagca gcagaccata ctaaatctcc aattctttgg
    14581 aaaccgaaca tcgagtaaaa gatgtagaac gggattgtag gtgttccttg agtagcataa
    14641 gatgtaccgg atgcaatgaa tgtcgacatc gcaccagcct cattgattcc ctcttcaaga
    14701 atctgcccag atttgctttc tttgtagcgc atcaatacct cataatccac aggtgtgtac
    14761 aactgtcctg aaggtgaata aattcccaac tggctaaaca atgggtccat tccgaaagtt
    14821 ctagcttcgt ctggaacaat tggtacaatt cgagaaccta tgccatctac tcgtgttaaa
    14881 ttacgcaata atcgaacaaa tgccattgtc gtgcttacag cttgtccatt ttgagagccc
    14941 gcatcgaatt cagaaaatgt ctccacggga ggtagtggaa gatctagtgg atgtgggcgt
    15001 cgttcgggta agaatccgtc caatgactca cgacgttcac gtaagtatgc aacttcatct
    15061 aggcgatcct ctggaaggat atatggtaac ttttcaagtt cttcatctga aagagtcaag
    15121 ccgattttat ctctcatgaa atgaagagca gaatgatctg ctttcttttt cccatgcgtt
    15181 gcgttgcgtc ctgcaaatgt tggacctagc ccgtatcctt tgattgaacg ggcgagaatt
    15241 actgttggcc gacctttgca agcaatagcg gctttgtaag cagagtaaat ccgatgtaaa
    15301 tcgtgccctc ccatatcatc tgttagaact tcaagttcag aatctgataa atggtcaacc
    15361 aaagatgcaa gatcagggga attgaatagt tccttccgga taacttcgcc ggatgctgtc
    15421 atgagacgtt gctcatcacc atcagttagg cttgctagac gggtcgcgag tagaccctgg
    15481 acatccgctg caaataacgg gtcccacata cgcccccata gacacttgat gacgttccat
    15541 ccggcaccag taaatcgaga ggcgagttct tgaacgattt tcgtattacc tcgaactgga
    15601 ccatctagtc gctgaagatt acaattcaca attatagtca gattatcgag gccttctcgg
    15661 cttgcaagag ttaattctga gagagattca ggttcatcgg attctccatc acccatgaag
    15721 taccatactc ggctactgtc agtatccacg acccctctat ctcttagata tcgattgaaa
    15781 cgggcttggc gtatggcagt cattgcacca agtcccatac ttacagtagg gtattcccaa
    15841 tattctggca tcaaacgagg gtgagggtaa gacgagaggc cgtccgtgaa agcctcacgg
    15901 cgaaaatgtt cgattttatc gatagtgaaa cgaccttcca tccaagatct cgcatatagc
    15961 ccagggctag catgaccctg ccaatagacg tgatcaccat gaccatctcc atccttaccg
    16021 cggaaaatat gattcaaacc tacttcccat agagttgcaa tactggcata tgtcgagata
    16081 tgaccaccaa taccatcgaa attcttgtta gcacgtgtaa ccatcatcat tgcattccaa
    16141 cgaa
//
LOCUS       DUKB01000230            4415 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_220913, whole genome shotgun sequence.
ACCESSION   DUKB01000230 DUKB01000000
VERSION     DUKB01000230.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4415)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4415)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4415
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_220913"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..829
                     /locus_tag="HA345_07570"
     CDS             <1..829
                     /locus_tag="HA345_07570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85251.1"
                     /translation="AFEELIVDPSTNRVRLIALKAQLDQVLDKAKTTLEVSGLSVLSM
                     TQVASKIIRAPEGAPPPKVAEPTTESTSPPPVEVVTSVAPEPVTPTPESIPNPQNISD
                     AEDALAAAFSGDNQPSTNSSLPVDSGTEDDALASAFSVPTSAPVVTPDPNQTRPVVTE
                     DPVKMADASPESFPPKAPIPADTPTVLAPSRAPIGSRPAPTQPSSGQTAQPTFGALPS
                     GAPSAAAAPRPAGTGKVRNAGAIGIRATIQTGVFCASCGIGVEHHWRHCPLCSNRLM"
     gene            complement(830..1828)
                     /locus_tag="HA345_07575"
     CDS             complement(830..1828)
                     /locus_tag="HA345_07575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85252.1"
                     /translation="MVDEQDLGSVAAEAAEKEKIRNSARTVIDTCMQLRGHENLLIVT
                     DPHTAEIGQALYEAGSLVSDRVLMVMMPSTHRHGQEPPNPVADMMRRQHVVIAATRYS
                     LTHTRARLIASKDGARIATMPGVNRAMFIEGGMTADFDTLQTNIATMGKVLRRHRSVT
                     IEGNGTELNFDISGRWNLEDNGICNRPGQVTNLPAGKIFSQVKSDTVTGSIEIDGAWD
                     SIALKSPISIVFDQGRLIGIEGPEDGHLKEQIDELTEDGMETIQLVEFGFGMNPQARI
                     TGNALEDEKVLGSCYIVLKQAKNRRGIEIRSSAVSTKSTVRLGEKYLIDSGEFQSD"
     gene            1946..>4415
                     /locus_tag="HA345_07580"
     CDS             1946..>4415
                     /locus_tag="HA345_07580"
                     /inference="COORDINATES: protein motif:HMM:NF021355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85253.1"
                     /translation="MGHTRKYALLLTILMIGTSLVGCLSIVDDIIQDIEDSSNDYPSL
                     EIGERARSSPALQTYDACSDLLDDLQDAAFEEALVSLDQNAYWHWTDSYYYALREGDV
                     MMDGVAEMASDDMAQESSAPVAGSTTSESGNSAPVEGEDYSGTNNQEDGVDEADFLKT
                     DGRWIYIINNGHLVILGVPEFGQLEMASNMTLDGTPREMLLDGDRLVLVSNLYYWNLE
                     TDDPLRALMVMGEADEWGYYAYRMSNLVQYTVIDVSNRSAPVIEREIFVEGHYHTARL
                     VNGTMRSVTHATTYIDGLLHYPELPQDYWEINDRYNRMDVWNSSVDDAILHNREVADG
                     LVLEDFAPRIHERIGDTIMTHPVTSGDCSEFSMADSSLSRGFTTISTIGLFEEETTIQ
                     VDHIGSSWVNVYSSGDTMVLAEPANDWWWYWGSDWSDETNIHTFDISEPANTEYIGSG
                     RVIGNVQDQFSISEHDGSIRVASTSDNWDRWWLAATDIAVDVAEAVDVAISTDSDLLI
                     EPEIPECLGPSNHVSVLQDVGNGILETVGEINDIACGERIWSARFVGEIGYLVTFRNI
                     DPLWTIDLSDPTNPTILGELEVPGVSTYIHPVNEDLLLTIGIGPAGEDGFGLDWSQTQ
                     ISLFDVSDLENPLLADSLALSPGYLDDNCDNIRSCGWSWSWSEATYEHKAFNYWAPEG
                     LLAVPLSTNRYVYDIIEEDGRLYSYYGYEFVSTLKLVDVDTENKILALHGEVDHSNLY
                     GDAVQEYWYSSTDIRRSIFMGDYIYAISSNGMTVHVTDNLTHVSTVELPEQPQLEYYT
                     SPVVSTEGEGSIESSDGGEGSAPES"
BASE COUNT         1041 a         1157 c         1057 g         1160 t
ORIGIN      
        1 tgcattcgag gagctgattg ttgacccttc taccaatcgg gtccgattga ttgctctaaa
       61 ggcacagttg gatcaggtat tggataaggc caagacaact cttgaggttt caggcctatc
      121 ggtactcagt atgacccagg tcgcatccaa aattatccgt gcacctgaag gtgctcctcc
      181 tccgaaggtt gcagaaccta ccactgaatc tacctctcct cctcctgttg aagttgtaac
      241 ttctgtagct ccagaaccag tcactccaac tccagaatct atccccaatc ctcagaatat
      301 ctctgatgct gaagacgccc ttgccgccgc attttcagga gacaatcagc cctctaccaa
      361 ttcttctcta cctgttgatt ctggcactga agacgatgct ctcgcctctg cgttctctgt
      421 tccaacctct gcccctgtcg ttacccctga tcctaatcaa acgagaccag tagttactga
      481 agatccagtt aaaatggcgg atgcgtctcc ggaatcattt ccaccgaaag caccgattcc
      541 tgctgatacc ccaaccgttc ttgccccatc tcgtgccccc attgggagcc gcccggcccc
      601 aactcaaccc tcatccggac agaccgcaca gcccactttc ggagctctcc catccggtgc
      661 acctagcgct gcagccgcac cacgtccggc gggcacagga aaagtacgga acgctggggc
      721 aatcggaatc cgagctacta tccagaccgg tgtcttttgt gcttcatgtg gaattggtgt
      781 ggagcatcac tggcggcatt gccctctgtg ctctaaccga ctgatgtgat cagtcagatt
      841 ggaattcacc tgaatcgatt aggtattttt caccaagacg aactgttgat tttgtagata
      901 ctgcgctgga cctgatttca atccctcgcc gatttttggc ttgtttcaag acaatgtaac
      961 aacttccgag aaccttttca tcttcgagtg cattaccggt tatcctcgct tgaggattca
     1021 ttccgaagcc gaattcaact aattggatag tctccatgcc atcctcggta agttcgtcaa
     1081 tctgctcttt gagatgacca tcctctggcc cttcgattcc aataaggcgg ccttgatcaa
     1141 agacgatact gattggtgac ttgagggcga tagagtccca ggcgccgtcg atttcgattg
     1201 aacctgtcac agtatccgat ttgacttgag agaagatttt gcccgctgga aggttcgtga
     1261 cttgtcccgg tcggttgcaa ataccgttgt cttcaagatt ccaacggcca gagatatcga
     1321 aattcaactc tgttccattt ccttcaatgg taacgcttcg atgtcgtctc aaaaccttgc
     1381 ccatggtggc gatattagtc tgaagagtat caaaatcggc agtcatgcct ccttcaatga
     1441 acatcgcccg atttactccc ggcattgtgg ctatccttgc tccatccttg gacgcgatta
     1501 acctagcacg ggtatgagtc aatgagtagc gcgttgcagc gattacaacg tgttggcgcc
     1561 gcatcatatc agctaccggg ttcggtggct cttggccatg gcgatgtgta ctcggcatca
     1621 ttaccatgag gactcgatcc gagaccagtg atcctgcttc atagagggcc tgtccaattt
     1681 ctgcagtatg tggatcggtg acaattagta gattttcgtg accccgtagt tgcatacagg
     1741 tatcaattac agtacgcgca gaattacgaa tcttctcctt ctcagctgct tccgcagcca
     1801 cagagccgag gtcctgctca tcgaccatta cccttgtatc atatctctgg ttattcaaac
     1861 cgcgtctgaa ccaaagaggg catcttcatc ggaaccagaa caatgcaaca attccttgat
     1921 atcataccct gttatagttt caaaaatggg acacacacgc aagtacgcgc ttctgttgac
     1981 aattctcatg attggtacta gtctcgtagg gtgcctgagt attgtggatg acatcatcca
     2041 agacatcgaa gattcttcca atgattatcc ctctttagaa atcggagagc gagctcgatc
     2101 atctcctgcc cttcagacct atgatgcctg ttcggatctc ttagatgatt tacaagatgc
     2161 agcctttgag gaggctctgg tatccctcga tcagaacgcc tactggcatt ggacggattc
     2221 gtactactat gctctccgtg agggtgatgt catgatggat ggtgttgccg agatggcttc
     2281 agacgatatg gctcaggaaa gtagtgcgcc agtcgctggc tctacgactt cagaatctgg
     2341 aaattccgcc cctgttgagg gtgaggacta ctctggaact aacaaccagg aggatggtgt
     2401 ggatgaggca gacttcctca agactgacgg ccgctggatc tacataatca acaatgggca
     2461 tctcgtaatc cttggcgttc cagagttcgg tcagttagag atggcctcca acatgactct
     2521 agatggcacc ccgagagaga tgcttcttga tggagaccgc cttgtgctcg tctccaatct
     2581 atactactgg aatctcgaga cggatgaccc tctccgtgcc ctgatggtga tgggagaggc
     2641 agatgagtgg ggatactacg catatcgtat gtcgaacctc gtgcagtaca cagtcatcga
     2701 cgttagtaac cgcagcgctc ctgtgattga gcgagagatt ttcgtcgaag ggcattacca
     2761 tactgcacgt ctcgtcaacg ggacgatgcg tagcgttacg cacgccacaa cctacatcga
     2821 tgggctgctt cactacccag aactgccaca ggattactgg gagatcaatg accgctacaa
     2881 ccggatggat gtttggaaca gttcagtcga tgacgcaatc cttcacaaca gggaggtagc
     2941 cgatggtctt gtgctagagg atttcgctcc acggatccat gagcgcatcg gtgacacaat
     3001 catgacacac ccagtaactt ctggcgattg tagcgagttc tcgatggccg atagttcact
     3061 ttctcgtgga tttactacaa tctccacaat aggtctgttc gaggaggaga caaccatcca
     3121 ggttgatcat attggctcct cttgggtaaa tgtctactct tcgggggaca caatggtact
     3181 cgcagaaccg gccaacgatt ggtggtggta ttggggtagc gattggtccg atgagaccaa
     3241 catacacacc ttcgacatct cggaaccggc gaataccgaa tacatcggtt ccggtcgcgt
     3301 gataggtaat gtgcaggatc agttctctat ctccgagcac gatggtagta tccgcgtcgc
     3361 atccacatcg gataactggg atcgttggtg gttggcagcg accgatatag cagtcgatgt
     3421 tgctgaagcc gtcgatgttg caatttcaac agattccgat ctcttgattg agccagagat
     3481 accggaatgc ctcggcccat cgaaccacgt atctgttctg caggatgttg gtaacggcat
     3541 tcttgagaca gtcggtgaga tcaatgatat cgcctgcggg gagcgtattt ggagtgctcg
     3601 tttcgtcggc gaaattggct accttgttac gttccgaaac atcgacccac tctggacaat
     3661 cgatctctct gatccaacta atccaacaat tctcggtgaa cttgaggttc ctggtgtatc
     3721 gacctacatc catccagtga acgaggatct tctcctaact atcggtattg gccccgccgg
     3781 agaggatggt ttcggacttg actggtctca gacccagatt agcctcttcg atgtgagtga
     3841 tctagagaat cctcttttgg cggattcact tgcgctttcc cctggatacc tagatgataa
     3901 ttgtgataac atacgctcat gcggttggtc ttggtcatgg tctgaggcga cctatgaaca
     3961 caaggcattc aactattggg cccccgaggg tctcctcgca gtcccccttt caacgaaccg
     4021 atacgtctac gatataatcg aggaggatgg acgcctgtac tcctattatg gatatgagtt
     4081 cgtttccacg ttgaagcttg tcgatgtcga tactgaaaac aagatactcg cacttcacgg
     4141 tgaagttgac cattctaacc tctatggtga cgccgtccaa gagtactggt actcttctac
     4201 agacatccgt cgttccatct tcatgggtga ctacatctat gccatttcat cgaacggcat
     4261 gacagtccat gttacagata acctcactca tgtatcaaca gtcgaattac ctgagcaacc
     4321 gcagttggaa tactacacca gcccagttgt atccacagag ggcgagggat caatagaatc
     4381 gtctgatggt ggcgaaggat cggctcctga atcgg
//
LOCUS       DUKB01000231            3903 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_169451, whole genome shotgun sequence.
ACCESSION   DUKB01000231 DUKB01000000
VERSION     DUKB01000231.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 3903)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 3903)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3903
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_169451"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..927)
                     /locus_tag="HA345_07585"
     CDS             complement(<1..927)
                     /locus_tag="HA345_07585"
                     /inference="COORDINATES: protein motif:HMM:NF013528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85254.1"
                     /translation="MSWTDEFHSWISSCESKGVIAIVTHRNGDMDTIASGCALAEALG
                     SNTRCVGIHVSKVAREVIQKLNFHHHRMDANRPAWPRTIAGIIVVDAGGPGQIGIELP
                     ANIPLCVLDHHAHSSDSWNVGDTGLHVNRPVKATTQIVYEYLRDKIPNTLTDRVRKLL
                     MTGLISDTGHYRHADSTALSDAGSILGSEIEHGDVLDLLRTTGLGRSTRTATLRALSR
                     VEVEISGGWTVAITSCGTHEGLVGGSLINAGADVAIVTNPKNPLLRVTTRASHRAVEG
                     GIGMGDILSTLAELHGSEGGGHPGAAGWTTDID"
     gene            complement(942..1259)
                     /locus_tag="HA345_07590"
     CDS             complement(942..1259)
                     /locus_tag="HA345_07590"
                     /inference="COORDINATES: protein motif:HMM:NF014030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85255.1"
                     /translation="MSEDTRETIQRLAAQLQNIMQQVQTVETQIREIETTIGALQSQD
                     PNRPVYRQVGPLLLEVDDRKSLKEELEQSRATLDEHLGRIQSTEKELREAYESAVKAF
                     EAQ"
     gene            complement(1271..1504)
                     /locus_tag="HA345_07595"
     CDS             complement(1271..1504)
                     /locus_tag="HA345_07595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85256.1"
                     /translation="MTKRSERDLTIQIASTDLDALCSSLSTEPFPCTVNDGRVCISIE
                     SITTVDVRARWNTVMRALIGADEALQTIHSIEP"
     gene            complement(1488..1901)
                     /locus_tag="HA345_07600"
     CDS             complement(1488..1901)
                     /locus_tag="HA345_07600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010916567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37ae"
                     /protein_id="HIH85257.1"
                     /translation="MSKRTQKTGKTARYGPRYGVSVRHRAGKALDRVKRKYTCPSCQY
                     QKVTRKAAGIWTCKKCGHTFAGGVWEPYTRASEANHRILRRGVEGATATDMAVIAQTR
                     ALEYEKTLSEREDDSESTPAVEEVSEEATVDDEEE"
     gene            complement(1918..2691)
                     /locus_tag="HA345_07605"
     CDS             complement(1918..2691)
                     /locus_tag="HA345_07605"
                     /inference="COORDINATES: protein motif:HMM:NF003285.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HIH85258.1"
                     /translation="MAAPPVPELLRAHLTELAKNDERLDGRGRFEGREVQIETGVLPR
                     AEGSARVVMGDTIVLAGVKFQIMTPYPDRPTSGGFMTSAEVRPVSGVHWEAGPPSPAA
                     IELGRVVDRGIRESGCLDMSDLCILPGEKAWQVILDVFALSDDGNLFDAFATAAMAAL
                     RTAIIPGERFDVGEDRPLPVSKKPMMCSYHRVGGRFVYDAVRREEIGGAERIHITLGD
                     DDHVHSLQKGLKGAFTADEFAEIMDHARQRCAELRNMIE"
     gene            complement(2691..3392)
                     /locus_tag="HA345_07610"
     CDS             complement(2691..3392)
                     /locus_tag="HA345_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008084891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HIH85259.1"
                     /translation="MIDDNGIRVDGRTAGDIRPVEIRAGVIPVADGSAEVIWGTNHVI
                     AAVYGPMEAHPRKIQKQDRAVLDVRYNMAPFSTTDRMRPGFNRRSREISKVTAEALET
                     VVLTELYPRSKIRVEIEVLTAEAGTRCAGITAASVALADAGIPMTDMVISVASGKING
                     IVVCDLNKEEDNYGAADLPMGICANSGDLVFLQMDGDLSPEEFQQAWDYNMESIGPVH
                     ELMIEALEKANGGES"
     gene            complement(3417..>3903)
                     /locus_tag="HA345_07615"
     CDS             complement(3417..>3903)
                     /locus_tag="HA345_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85260.1"
                     /translation="GDLVIGVVEAVQSNLWFLDINAPFNALLPMSLGPGKAEFGGARN
                     VLNVGQTVLCRIQEVDETHSSVVTMKGLGLRRVDSGLVESLPPHLMQTLFSDGGVALK
                     ALKASTECRVVLAENGRMWVNGSSDSITEVVARIARIRSMARDISNRDEMIAILSTEV
                     A"
BASE COUNT         1003 a         1060 c          872 g          968 t
ORIGIN      
        1 atcaatatca gtagtccatc cagcagcacc tggatgtcca cctccttctg aaccgtgtaa
       61 ttcagcaagt gtggagagga tatcccccat acctatacca ccttcaacag ctcgatgact
      121 tgcacgagta gtcactcgaa gaagtgggtt ttttggattg gtaacgatgg ccacatcagc
      181 tccagcgttg atgagagatc ctccaactaa tccctcatga gtcccacagg aagtaatcgc
      241 aaccgtccat cccccggaaa tttctacttc gaccctagat agagcccgta atgtcgcagt
      301 cctcgtagaa cgtccaagcc cagtggtacg taggagatcc aaaacatccc cgtgttcgat
      361 ctctgaacct agaattgacc ccgcatcaga aagtgctgtc gaatcagcat gtctgtaatg
      421 cccagtatca gaaatcaatc cagtcatcaa caactttcgc accctatcag tcagtgtatt
      481 cggtatttta tcacgaagat attcgtaaac aatctgcgtt gttgccttaa ctggacgatt
      541 tacgtgtaat ccagtatctc cgacattcca tgaatctgag gagtgagcat ggtgatcaag
      601 gacgcataga gggatatttg ctggaagttc gattccaatt tgcccaggtc caccagcatc
      661 cacgacaatt atccctgcga tagttcgggg ccaagcagga cgattagcat ccatccgatg
      721 atgatggaaa ttgagtttct gtatgacttc ccgtgccacc tttgacacat gaatgccgac
      781 acaacgagta ttgcttccaa gcgcttcagc aagcgcgcaa ccactcgcga ttgtatccat
      841 gtctccattc cgatgggtta cgatagcgat tacacctttc gattcacaag aggatatcca
      901 cgagtgaaac tcgtccgtcc aggacatggt aaactactca ctcactgcgc ctcgaaagcc
      961 ttgactgctg attcgtaggc ttccctcaat tccttctctg tactctggat tcgtccaaga
     1021 tgttcatcta atgtggccct cgattgttca agttcctcct tcagagattt tctatcatcc
     1081 acctcaagga ggaggggtcc aacctgacga tacacgggtc tattcggatc ttgtgattga
     1141 agagccccta ttgtggtctc aatctctcgg atttgggtct cgactgtctg cacttgctgc
     1201 atgatgttct gcaactgagc agcgagccgc tgaatggttt ctcgtgtgtc ctcgctcatc
     1261 gctcaacgcc tcatggttcg atgctatgaa tggtttgcaa cgcttcgtcg gcaccaatta
     1321 gagcacgcat tacagtattc catcgagctc ggacatcaac ggttgttatg gattcgatag
     1381 agatgcatac tctaccgtca tttacagtgc aaggaaaagg ttcagtggag agtgaggaac
     1441 agagcgcatc aagatcggta gaagcgatct gaatagtgag gtcccgttca ctcctcttcg
     1501 tcatcgacgg tagcctcctc ggagacctcc tcaacggcag gtgtggattc agaatcatcc
     1561 tctcgctcgg acagggtttt ctcatactct aaagcgcgtg tctgagcgat tacggccata
     1621 tccgtagctg tcgccccttc gactccacgg cgaagaatgc gatggtttgc ttcactagcg
     1681 cgtgtatagg gttcccaaac accacctgcg aaagtatggc cacacttctt gcaggtccaa
     1741 ataccagctg ccttacgtgt taccttctga tactggcagg aagggcaagt gtacttacgc
     1801 ttgacacgat cgagagcctt accggctcgg tgacgaactg aaacaccgta ccggggccca
     1861 tatcgagccg tctttccggt cttctgtgta cgcttcgaca tctcaaatca tctccactta
     1921 ttcgatcatg tttctcaatt cagcacaacg ttgccgggcg tgatccatga tctcagcgaa
     1981 ttcgtccgcg gtgaacgctc cctttagacc cttctgtaac gaatggacat ggtcgtcatc
     2041 accgagtgtg atgtgaatac gttcagcacc accaatctct tcgcgacgaa cagcatcgta
     2101 aacgaagcga ccaccaacac ggtgatagga gcacatcata ggtttcttac tcaccggtaa
     2161 tggacgatct tctccaacat cgaaacgctc accggggatg atagcggttc tcaatgcagc
     2221 catggcggct gtggcaaatg catcaaacag gttaccatca tctgagagag caaagacatc
     2281 aaggatgact tgccaagcct tctcacctgg aagaatacac aagtcagaca tatcgagaca
     2341 tccggactcg cgaataccac gatctacaac tcttccaagt tcgattgcag caggtgaagg
     2401 agggccagcc tcccaatgaa caccactgac tggacgaacc tcagcgctag tcatgaaacc
     2461 gccacttgta ggtcgatcag gatatggagt cataatttgg aacttgacac ctgcgaggac
     2521 gatggtatcg cccatgacta cacgagcgct gccttctgct cgtggtaaga caccagtctc
     2581 aatctgaact tcacgacctt caaaacgacc acgtccatca agacgctcat cgttcttagc
     2641 aagctcagta aggtgagcac gaaggagttc tggaactgga ggtgcagcca tcaggattca
     2701 cctccattag ccttctcaag agcttcaatc ataagttcat gaactgggcc aatcgactcc
     2761 atattgtagt cccaagcttg ttggaactct tcaggtgaaa ggtcaccatc catctgaagg
     2821 aagacgagat ctcctgaatt tgcacaaatt cccattggaa gatcagctgc accgtagttg
     2881 tcttcctcct tattgaggtc acataccact attccattga tcttaccact tgccacggag
     2941 ataaccatgt cagtcatagg aatgccagca tcagcaagtg ctacactcgc ggctgtgatt
     3001 ccagcgcaac gagtacctgc ctctgcagtt agtacttcga tctcgactcg aatcttagag
     3061 cgagggtaaa gttctgtgag aacaacggtt tcaagcgctt cagcagtaac cttgctaatc
     3121 tcacggctac gacggttgaa tccaggtcgc atacggtcag tagtactgaa tggagccata
     3181 ttgtaacgga catctagtac tgctcgatct tgcttctgaa tcttgcgagg atgtgcctcc
     3241 atcggcccat aaactgcagc aataacgtga tttgtacccc atattacctc tgcactaccg
     3301 tcagcaactg gaattacacc ggcccggatc tccacaggtc gaatatctcc tgcagttctt
     3361 ccatccacac ggattccatt atcatcaatc atctgtacgt ctccataacc acccattcag
     3421 gccacctccg tgctcaggat cgcaatcatt tcatcgcgat ttgagatatc tcgagccata
     3481 gaccggattc ttgcaatccg tgccacaacc tcagtgatag aatctgaaga cccattgacc
     3541 cacatacgcc cattctcagc gagaacaaca cggcattcag tcgatgcttt cagagcctta
     3601 agtgctacac ctccgtctga aaagagggtt tgcattagat gaggagggag ggattcgaca
     3661 agtcctgaat cgacgcggcg aagtccaagt cccttcatag tcacaacaga agaatgagtc
     3721 tcgtcgactt cttgaattct gcagagaact gtctgtccta cattcaggac attgcgtgcg
     3781 cccccgaact cagctttccc aggaccaagg ctcattggaa gtaaggcgtt gaaaggggca
     3841 ttgatgtcaa ggaaccaaag attgctttga actgcttcaa caacgccgat gacaaggtca
     3901 ccc
//
LOCUS       DUKB01000232            4278 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_98596, whole genome shotgun sequence.
ACCESSION   DUKB01000232 DUKB01000000
VERSION     DUKB01000232.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4278)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4278)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4278
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_98596"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="HA345_07620"
     CDS             <1..739
                     /locus_tag="HA345_07620"
                     /inference="COORDINATES: protein motif:HMM:NF014717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HIH85261.1"
                     /translation="YTSLGGLTQSGLGLGIGSSIDLRDPQRSMLHTEVRIVGVLDDDA
                     SLLMSGVLLRDDSTVSLLSSTNPMVWIDVQNDEESVFIAESLQGELGADGATVLVVEE
                     LFDQIRIILVSLLGLVRAFLAIGLLVGIIGLAVVTNRSLKQRNMQIGVMRAIGFQPRE
                     VFMTFGLEVLWTSGVGVISGGIVGFLLHWLLHKMIFANDGGAFVIPILEFVMIPLFAI
                     LFSLIATSPSLLRSTKSPPHSVMRSMM"
     gene            886..4086
                     /locus_tag="HA345_07625"
     CDS             886..4086
                     /locus_tag="HA345_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85262.1"
                     /translation="MKKTLSLMMIALMIASTLLYIVPDELNEESKSADAGRSGTYEIK
                     LHDVTSPRETYVDAFSGDARNQIEAGTDVKFVLVILNDGDELVENLNVQVDVIANADG
                     ANPIRVAGTDANSGGDEAIGLTQFGAAYDNLSAGDYLANGAYTVRDTPGPSGTASDLV
                     WTPSNAGTYRIRVTLEDTTSQDTDLTNNQMEFDVTVVDWSDIGVSICWLDGNECHADE
                     QAARTQAVSAGNAAPFRVSISAHSSVDDWQAREAKMSVSFSGSFDGTLSTVDDPLNPG
                     SQATIASFQGNSPEYTLGNSTTGVEVWHNVSDIEQTSDNGAHPNPCPANTNPCLQTRM
                     LVDSGQTFSIDGYMVADTDSVSGFSAFSVSVQFDGHTIYTGEALDESSNDTQGSTLVN
                     YESLSEIDDRAGNNFGSITGTFGVFHNIRMQSLTLGDDGVFGGVLNVGQQWLKASVLH
                     DGSDQTNTYDWNVTFQVTDPDGNMMEYWADECTMMDGEEAYSHKLLGVDDSGMEGATM
                     EGIACIQVFITPGDHSVRAVANFLDTTRTELTASDNQRATQIEGINDIPNVDIRIGDL
                     MNDPPVVGDPLSFEARASDSETEDPAMLSYAWQLSGGNRLEVDMDTCMEGVGMTMCNL
                     DFTDMLWLGGNNVKLVVCDEFGACGEDTETIKMWNRFGPQEYSGGEGDAAWTANYSMV
                     FDFNQPTNVTFTNADAITGADLGMTASYDSVIAFNVGSGNDPTGNEQPYFSFYPSEMG
                     SESLVVSFAGVISNDYSLWYQGSTGWQSMSTIKTANDNGGVTLSWSQPGDIPNLKDTT
                     YAVFIASSTDEPPKTGLECDGVQRGASGEIVVDWTYVDSALLDTSEDRIEFLVDDVLK
                     NTLNVSATSHTFVGVHAKAYKFDVRVVNGVGANSTVCAHASITADGQVDPAPTVSGMT
                     ATVSASDITLNWNAENVDDVDHWMVCWSVGFDFAASDFDGLTCEEMTDASTSVTLSKQ
                     TVCSGTCAGEYFFAAAGVDANDNKGSDAAQAKVDLSETVVDPGTTPGEQSDDVEGSIS
                     QNAIMAIVGVVVLAVIAGAVILTRGGGGGGDDEFDY"
BASE COUNT         1018 a         1006 c         1086 g         1168 t
ORIGIN      
        1 ctacacttca ttgggcggcc ttactcaatc tggtttagga ttaggtattg gctcttctat
       61 cgatttacgt gatccacaac gttctatgct tcacacggag gtacgtattg tcggtgtcct
      121 tgatgatgac gcatctcttc taatgtcagg ggttcttctt cgcgatgatt caactgtatc
      181 cttgttgagt tctacgaatc ctatggtttg gattgatgtg cagaatgatg aggaatccgt
      241 gtttattgca gaatcattgc aaggtgaact cggagcagat ggtgccacag ttctcgtagt
      301 ggaagaactc tttgatcaaa ttcgaatcat tcttgtttct ctgttaggtc ttgtgcgcgc
      361 tttccttgca atcggtctac tagtcggaat cattggatta gctgttgtaa caaatcggtc
      421 tctgaagcaa cgaaacatgc agattggcgt aatgcgcgcc attgggtttc agccgcgcga
      481 ggtcttcatg accttcggat tggaggttct ctggacgagt ggagtaggtg tcatttccgg
      541 aggaatcgtt ggatttcttc tccactggtt actgcataag atgatatttg ctaatgatgg
      601 aggtgccttt gtgataccta ttcttgagtt tgttatgatt cccctgtttg cgatattatt
      661 ctctttgatt gcaacgtccc cttccttgct aagaagtact aaatcacctc ctcattcagt
      721 gatgaggtca atgatgtgac gtcacgttta tcgaaaatca cacaaatgga acgctctaat
      781 caagaaaaac ggtacttttc aaacatcatt tcatatcgta tcaccccaat tgtatatata
      841 gagatgatac tcctaagcaa cgcttgacca atgggggtca tgactatgaa gaagacgcta
      901 tcgttgatga tgatcgcact aatgattgca agcacgctgt tgtatatcgt gcctgatgaa
      961 ctgaatgaag agagtaagtc ggcagacgcc ggccgctcag gcacgtatga gataaaactg
     1021 cacgatgtta catctcctcg cgagacgtat gttgatgcct tttccggcga tgcccggaac
     1081 caaattgaag ctggtacgga tgtaaaattc gttcttgtaa tcctcaatga tggcgatgag
     1141 ttagtcgaga atctgaatgt tcaggttgat gttattgcta atgctgacgg agcaaatccg
     1201 attcgagttg ctggtactga cgctaattcc ggtggcgacg aggctattgg tctgactcaa
     1261 ttcggtgccg cttacgacaa tctttccgca ggcgactacc tcgctaacgg agcatacact
     1321 gtccgtgata ccccaggacc atcgggaaca gcctctgacc ttgtctggac tccctcaaac
     1381 gctggaactt acaggatccg cgttactcta gaggatacca ctagtcaaga caccgatctc
     1441 accaacaacc agatggaatt cgatgtcaca gtcgttgact ggagtgatat cggtgtatcc
     1501 atctgctggc ttgacggtaa tgaatgccac gctgatgagc aagctgctag gacacaggca
     1561 gttagtgctg gaaacgctgc cccattcaga gtttccatct ccgcacacag cagtgtcgat
     1621 gactggcaag ctcgcgaggc taagatgagc gtgtctttct ccggttcctt cgatggaaca
     1681 ttgtccacag tcgatgatcc tctgaaccct ggaagtcagg ctacaatcgc ctcgttccaa
     1741 ggtaacagtc cagaatacac tcttggtaac agtaccactg gagtcgaggt ctggcacaat
     1801 gtctcagaca tcgagcagac ttctgacaac ggtgcacacc ctaacccgtg cccagctaat
     1861 accaacccct gccttcagac ccgtatgttg gtagattcag ggcagacatt ctccattgat
     1921 ggatacatgg ttgctgacac agattccgtc tctggattct ctgcattcag tgtgtccgtc
     1981 caattcgatg gacacacgat ttacactggt gaggctctcg atgagtcctc taacgatacc
     2041 caaggttcga cacttgtcaa ctatgagtcg ctttctgaga ttgatgatcg tgcagggaac
     2101 aacttcggtt ctatcactgg aacctttggt gtcttccaca acatccgtat gcagagcctc
     2161 acactcggcg atgatggtgt cttcggaggc gtccttaacg taggccagca atggctcaag
     2221 gcttccgttc tacacgatgg ttctgatcag actaacacct acgactggaa cgttactttc
     2281 caggtcactg atcctgatgg caacatgatg gagtactggg cagacgagtg tacgatgatg
     2341 gatggcgagg aagcatactc gcacaagctc ctaggtgtcg atgactctgg catggagggc
     2401 gctaccatgg agggtattgc ctgcatccaa gtattcatca ctccagggga tcacagcgtc
     2461 cgtgctgtag caaacttcct tgataccact cgaactgagt tgactgcatc tgacaatcag
     2521 cgcgcgactc agattgaagg tatcaatgat attcctaacg tggacatccg cataggcgat
     2581 ctcatgaacg atccaccagt tgttggcgac cctctgtcct ttgaagcacg tgcttctgac
     2641 tctgagactg aggatccagc catgctttcc tacgcatggc aactctctgg aggtaatcgt
     2701 ctagaggtcg acatggacac atgtatggaa ggagttggaa tgacaatgtg taaccttgat
     2761 ttcactgata tgctgtggct tgggggcaac aatgtcaagt tggttgtttg tgatgaattt
     2821 ggcgcttgcg gcgaagacac tgagacaatc aagatgtgga accgcttcgg ccctcaggaa
     2881 tattctggtg gcgagggtga tgcagcatgg actgcaaact attcgatggt ctttgatttc
     2941 aaccagccaa caaatgttac tttcactaat gcagacgcta ttactggtgc agacctcggg
     3001 atgacggcta gttatgactc cgttattgcg tttaatgtgg gatcaggaaa cgatcctact
     3061 ggcaatgagc aaccatactt ctcgttctat ccatcagaga tgggttctga atccttagtg
     3121 gtctctttcg caggtgtcat cagcaacgat tactcacttt ggtaccaagg tagtaccggt
     3181 tggcagtcaa tgtcaactat caagacggcc aacgacaatg gtggcgtgac tctcagttgg
     3241 agtcagccag gagatatccc taacttgaag gataccacct atgcagtgtt cattgcttcg
     3301 agcactgacg agcctccaaa aactggtctt gaatgtgatg gtgttcaacg cggtgcttcc
     3361 ggagaaattg tcgttgactg gacctatgtg gacagtgctc ttctcgacac ttctgaggac
     3421 cgtattgagt tccttgtgga tgacgtgctc aagaacacgt tgaatgtcag cgcaacatcg
     3481 catacgttcg tcggagtcca tgcaaaggca tacaagttcg atgtccgcgt cgttaacggc
     3541 gttggtgcga attctacggt gtgtgctcat gcatcaatca cagcagatgg tcaggtggac
     3601 cctgctccaa ctgtctctgg catgactgca acggtatcag cctcagacat cacgttgaac
     3661 tggaacgctg agaatgtcga cgatgtagac cattggatgg tttgctggtc agtcggcttc
     3721 gacttcgctg catcggactt cgatggtctg acctgtgagg aaatgacgga tgcatctact
     3781 tccgttaccc tatccaagca gacggtttgc tctggaacat gtgcaggcga gtatttcttc
     3841 gctgcagctg gtgtcgatgc aaacgacaac aagggatctg acgcggctca ggccaaggtt
     3901 gatctttctg agaccgtagt cgatcctggc acaactcctg gtgagcaaag cgatgacgtc
     3961 gaaggcagta tttcgcagaa cgcgattatg gcgattgtcg gcgttgttgt gcttgcagtc
     4021 atcgctggtg cagttatcct gacacgtggc ggcggcggcg gcggagacga cgagttcgac
     4081 tactgatcgg cctagctaat cacgctgagt tatacttcgg gcctagagat gggtccgagg
     4141 catttctctc catagccgag cggtttttct caggttataa tttgagtaat cttgtgcatt
     4201 ccaattgggt attaatccct aggcgtttcc actagccaag gagtaacggt ttcgattctg
     4261 tagatattcc tggctcga
//
LOCUS       DUKB01000233            5753 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_217903, whole genome shotgun sequence.
ACCESSION   DUKB01000233 DUKB01000000
VERSION     DUKB01000233.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5753)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5753)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5753
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_217903"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            complement(<1..591)
                     /locus_tag="HA345_07630"
     CDS             complement(<1..591)
                     /locus_tag="HA345_07630"
                     /inference="COORDINATES: protein motif:HMM:NF013646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85263.1"
                     /translation="MDSDVLIVGAGPVGGYLGKCLAEQGIHVIQIEEHLEIGRPFQCA
                     GLVTPSAMDKVGLHDTTLTDVWGARMHAPNGSSIEIGNPSQIREHVVCRKRFDEAVVH
                     QAINAGVELKLGTQITDAVLNDDHIAVTIRDEAGEQTLRTRLLCGADGAHSWVRSHAR
                     LGRPPETMIGFQVEAIGYPGLDGILDMYTGFNIAPGL"
     gene            complement(597..2933)
                     /locus_tag="HA345_07635"
     CDS             complement(597..2933)
                     /locus_tag="HA345_07635"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013311.1,HMM:NF013878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IA DNA topoisomerase"
                     /protein_id="HIH85264.1"
                     /translation="MTNLVIVESGAKGKKIKQYLGKEYIVDTCKGHVQDLPSRGAKDK
                     KQANKAMWASKPDVLPEPPWDWSGPNAEKTVDSLLAKAAKHNVETIYIATDPDREGEF
                     IAWRLAHIFDEYETVRITFNEITKKAVLQAIESPRPIDMDLVDAAKVRRFMDRLVGFR
                     ASKFSRSWRLPSMGRVQTPTLGFIVEREIEREAFVPQPFYAVNSNAGGLTFKVRFHEK
                     DDPDAWFDQDTDPPKHHPDRTNDLNLATQAVNSIKDSGKLTLTEAKPGSRSNSPKPPF
                     STPTLLRTAGSHPKIGWGSRRIMSVANDLYQQGLITYIRTDATRTNPDAREAVRQHIV
                     QQWGENHLRASPGVVGKDATGNAQNVQDAHEAIRPTDPGVERPEGIDAPQMALYRLIW
                     ARFAASQMSNSEYENLSLRASAGSFNRPLTGSVSWRVHAGWEAAYGDLRAEPRLSAPN
                     PVLSVGSVLDVASEDDNGWRLIEDETKPPARYRQHTLVEKMQNEGIGRPSTYAKIVDK
                     LLDRKYLIEESKALIPTEPGRTLWIEVAPMYGDDASVRGVFESHFTATMESGLDSIEH
                     GSGDAPTVWHDFMNEFSDAHKHALDIRALKPTPKQLNYMVNLLNAIPESERSTLLDGN
                     EPDQIPGARAKEIIDELRSRDIVAGPSEKQMALIHRLIEELGVQVNDAAKLVDLKNLE
                     ALSGGRNGSASKLIGLLLDMQREIPRAPTERQVKYLNDLLGKGVENLEKFEILPFLED
                     YSVSSVDEMTFAQISDAIQIMKDRLGIKGRGRRRKRSG"
     gene            complement(3005..3484)
                     /locus_tag="HA345_07640"
     CDS             complement(3005..3484)
                     /locus_tag="HA345_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85265.1"
                     /translation="MPPSLMPLERHPSRVPYAAQCMGPDSALTRAIDEWSRRFLRSVT
                     ITLGAPQIHHERFIELHNMKNEAVPSVYSTFEVIESNEGCLDLLVDQQLIGRIGNEPP
                     SHDAVHVPTDNLNNVLDLIDESIQRLIQAGYPGCLGCGGEDALEPWDEFASRVRLSQ"
     gene            3496..4569
                     /locus_tag="HA345_07645"
     CDS             3496..4569
                     /locus_tag="HA345_07645"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: protein motif:HMM:NF003645.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HIH85266.1"
                     /translation="MSRPLLALQDSEKAHARSLKILGTMEKSSVGRGLIRTLSRRLVL
                     ETHHFGMNFPNPIGLAAGMDKKGQSLLGWQEMGFGWMEYGGITAVEQDGNPRPRMFRS
                     RQDRALINRMGFNNLGAEKMAQILQQRKDRNLWPNIPVGANIGRSKSSTNEDALNDYL
                     TTMQALEAHADLFIVNVSSPNTPGLRDLQAGGQIENLLAGVTAWRNEHSTKPILVKIA
                     PDLSDEQIGAIAKVAVDTGIDGIVATNTTTSRNTLKSSAKFSQQTGGLSGRPLRERST
                     EVISILYQQLQGSIPIIGVGGIDSGESAWEKLTAGASLLQIYSGLIFEGPGLPGAINR
                     SIIQRMELEGITSLNDVIGKDAA"
     gene            4611..5006
                     /locus_tag="HA345_07650"
     CDS             4611..5006
                     /locus_tag="HA345_07650"
                     /inference="COORDINATES: protein motif:HMM:NF015085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HIH85267.1"
                     /translation="MALTRLGRLIVVGAILTALVGLMTYSVEPMTQYSIDEVIDSIDD
                     HENERIHIRGIIVNGTLDLESGTVVLTGTNSTMNVIISGLSIPTGFGEGTMVSVKGTL
                     HATDEGHVLRADDIKTGCPSKYEPTTLNE"
     assembly_gap    5260..5564
                     /estimated_length=305
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
BASE COUNT         1447 a         1277 c         1261 g         1463 t
ORIGIN      
        1 taggcctggc gcgatattga aaccagtata catatcgagt attccatcaa gaccagggta
       61 tccaattgct tcaacctgga accctatcat tgtctcaggt ggtcttccga gtcgggcatg
      121 acttcgaacc caagaatggg cgccatccgc tccacaaaga agtcgtgtac gaagcgtttg
      181 ctctcctgct tcatcacgta ttgttactgc gatgtgatca tcattgagga ctgcatctgt
      241 gatttgtgtt cctaatttta attctacacc tgcattaatt gcctgatgta caactgcctc
      301 atcaaaccgt ttcctacaaa caacgtgttc tctaatttgg gatggattcc cgatttcgat
      361 tgaagaaccg ttaggcgcat gcatccttgc accccagaca tcagttagag ttgtatcatg
      421 aagcccgacc ttatccatag ccgatggcgt tacaagtcca gcacattgga atggtctccc
      481 aatctcaaga tgttcttcta tctggattac atgtataccc tgttcagcaa ggcactttcc
      541 aagatatcct ccaacaggac cggctccgac aatcagaaca tcggaatcca tacttctcaa
      601 cctgaccgtt tccttctacg tcctcgaccc tttattccaa gtcgatcctt catgatctgt
      661 attgcatcac tgatttgagc gaatgtcatt tcatcaacag aagatacgct ataatcttct
      721 aagaatggta aaatttcgaa tttctcaaga ttttctacac cttttccaag aagatcgttg
      781 agatacttta cttgacgttc ggtaggagca cgcggtatct ccctttgcat atccaacaag
      841 agtccaataa gttttgatgc actcccatta cgtccacctg aaagtgcctc aagatttttc
      901 aaatcaacaa gttttgctgc atcgtttacc tggacaccta attcctcgat gagtctatgg
      961 ataagggcca tttgcttctc agaaggacct gctacaatgt ctcttgatcg tagttcgtcg
     1021 ataatttcct tagctctagc acccggtatc tgatcaggtt cattcccatc gagaagagtt
     1081 gaacgttcgg attcaggaat cgcattcaag agattcacca tgtagttgag ttgcttcggt
     1141 gtaggtttca aggcacgtat gtctagagca tgcttgtgag catcgctaaa ttcattcatg
     1201 aaatcatgcc atactgttgg cgcatcacca ctaccatgtt ctattgaatc cagacctgac
     1261 tccattgtgg ctgtgaaatg tgattcaaat acacctcgta cagaggcatc atcaccatac
     1321 ataggtgcaa cttcaatcca gagtgtacgg ccaggctcag taggaatcag ggctttggat
     1381 tcctcgatga gatattttcg atctagaagc ttgtcaacaa ttttcgcata agtggatggt
     1441 ctaccaatcc cttcattctg catcttctct acaagcgtat gttgacggta acgagcagga
     1501 ggttttgtct catcctcaat caagcgccac ccattatcat cttcggatgc gacgtcaaga
     1561 acactaccta cggataacac aggattaggc gctgaaagac gaggttcagc ccgaagatcg
     1621 ccatatgcag cctcccagcc ggcatgtact ctccatgata cagatcctgt taaaggacga
     1681 ttgaaggacc ctgcggaagc acggaggctt aggttttcat attcagaatt actcatctga
     1741 ctagcagcga aacgtgccca aatcaaacga tacagtgcca tttgtggagc atcgattcct
     1801 tcaggacgct caacacctgg atcagttgga cgaatcgctt cgtgtgcatc ttgaacgttc
     1861 tgagcattac ctgtggcatc tttacccaca acaccgggac tcgctctcaa atgattctcg
     1921 ccccattgtt ggacaatgtg ctgacgtaca gcttcacgag catctggatt agtccgagta
     1981 gcatcggtac ggatgtaagt aatgaggccc tgttggtaga ggtcattagc cacggacatg
     2041 attcgacgac taccccatcc aatcttggga tgagatcctg ctgtccggag aagtgtgggg
     2101 gtagagaaag gtggctttgg agaattagat cgtgatccag gcttagcctc agtgagtgtg
     2161 agttttcccg aatccttgat tgaattaaca gcctgtgttg ctaggttcag atcatttgtt
     2221 cgatcagggt ggtgcttggg cgggtcagta tcctgatcga accatgcgtc agggtcatcc
     2281 ttctcatgga atcttacctt gaatgtcaaa ccaccggcgt tcgaattaac agcatagaat
     2341 ggttgaggga caaacgcctc tctttcaatt tcacgttcaa caatgaatcc aagtgtagga
     2401 gtctgaacac ggcccattga tggtaatctc caagaacggg aaaacttgga cgctcggaaa
     2461 ccaacaaggc gatccatgaa tcttcgaacc ttggccgcat ctactaggtc catgtcaatc
     2521 ggacgtggtg actcaatagc ttgcaaaacg gccttcttcg taatttcatt gaaagtgatt
     2581 ctaacggtct catattcatc aaaaatatgc gcaagcctcc atgcaatgaa ttcgccttct
     2641 ctatcagggt cagtggcaat atagattgtc tcaacattat gtttggctgc cttagcaagt
     2701 agagaatcaa cggtcttctc agcattagga ccagaccaat cccatggggg ttctggaaga
     2761 acatctggtt tagaggccca cattgccttg ttcgcctgct tcttgtcttt agccccgcga
     2821 ctaggcaaat cttggacgtg acctttgcat gtgtcgacaa tgtattcttt gccaagatat
     2881 tgcttaatct tctttccttt agccccagat tcgacgatta caagattggt cacggctctc
     2941 cctccacatt taacggatta ccgacatgtc ataaatgtga gtggaaggat ggattcacct
     3001 gtctctattg agacagacgt acacgacttg cgaattcatc ccatggttcc agagcatctt
     3061 ctccaccaca tccgagacag ccaggatacc ctgcttggat tagcctctgt atcgactcat
     3121 caataaggtc gagaacgttg ttcagattat ctgtgggaac atgaactgca tcatgagatg
     3181 gtggttcatt tcctatacga ccaattaatt gttgatctac aagcagatcc aaacatccct
     3241 cattactttc gataacttcg aatgtagaat agacactagg aactgcttca ttcttcatat
     3301 tatgaagttc tatgaagcgt tcatggtgaa tctggggtgc tcctaaggta atcgtcacac
     3361 tcctaaggaa tcgacgagac cattcatcga ttgctcgcgt caatgcagaa tctggcccca
     3421 tacactgcgc agcatacgga actcttgaag gatgtcgctc aagaggcatc aaagatgggg
     3481 gcattctaca ggatcatgtc cagacccctt ctagccttgc aagattcaga gaaagcacat
     3541 gctcgttctt tgaaaattct tggaactatg gagaagtcat ctgttgggcg aggtttgatt
     3601 cgaactttga gccgtcgttt ggttttggaa acgcatcatt ttggcatgaa ttttcctaat
     3661 ccaatcggtc tcgctgcagg tatggacaag aaaggtcagt ccttactagg gtggcaagag
     3721 atggggttcg gttggatgga atatggaggt attacagctg tagaacagga tggaaatcct
     3781 aggcctcgta tgtttcgttc tcgccaagat agagcactaa tcaatcgaat gggattcaac
     3841 aatctgggtg cagagaagat ggcgcagata ttgcaacaaa ggaaggatcg aaatctttgg
     3901 ccgaatatac ccgttggtgc aaatatcggt cgctctaaat cctcgactaa tgaagatgcg
     3961 ttgaatgatt acctaactac aatgcaggct ttagaagcac atgctgatct tttcatcgtt
     4021 aatgttagta gtcctaatac ccccggatta agggaccttc aagctggtgg acaaatagag
     4081 aatctactcg caggtgttac ggcttggagg aacgagcata gcacgaagcc gattctagtg
     4141 aagatcgctc cagatttgtc agatgaacaa ataggtgcta ttgcaaaagt cgcggtggac
     4201 accgggatag atggaatcgt tgcaacaaac actaccactt ctcgtaatac tctgaagagt
     4261 tctgctaaat tctctcagca aactggagga ttgtcagggc ggcccctaag agaacgatca
     4321 acagaggtca tcagtatcct ttaccagcaa ctccaaggaa gtataccaat cattggcgta
     4381 ggcggtattg atagcggcga atcagcatgg gagaaactca ctgcaggtgc atctcttctc
     4441 cagatttatt cgggtttgat atttgagggg ccgggtttac ctggtgcaat caatcgttca
     4501 atcattcaaa gaatggaact tgaaggaatt acatcgctaa acgatgtgat aggcaaagat
     4561 gcggcttgag ttcactaatc ctcaagaagg acatccaacc cgttgtaatc atggcgttaa
     4621 ctcgcttggg ccgtctcatc gttgtcggtg caatccttac cgcccttgtt ggtctgatga
     4681 cctattctgt ggaacctatg actcaatatt cgattgatga agtgatcgac tctattgatg
     4741 accatgaaaa tgagcggatc catatacgtg gcattatcgt taatggaaca ctagatttag
     4801 aatctggaac agtggtccta actggcacca actcaacgat gaatgtcatc atctcagggt
     4861 tatccatccc tactggcttt ggagaaggta ctatggtatc tgtgaaggga acattacacg
     4921 ctacagatga aggacatgtc ttgagggctg atgatatcaa gacaggatgc ccaagtaagt
     4981 atgaaccaac tacactcaat gagtgattat tcaacgatag atgcgttgaa atgagaggct
     5041 gttcacgtaa tcacgggcta gggggggagt tgacgtaccc tgtttccaca aatcgtcgat
     5101 actggtggcc cgaagtctga gggcggcaca aacgagccgt cggcgaacac tggggggacg
     5161 acgatgcttc gaccccgaga gatccaggtt ggccagaccc acctccggag ggatgtggta
     5221 atggccttga cccgggaacc aggtcaggcg cggaagcgan nnnnnnnnnn nnnnnnnnnn
     5281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5341 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5401 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5461 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     5521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngaacca ggtcaggcgc
     5581 ggaagcgaac agcccgaccg ggagccatgg atgcctcggg atttcggagc ggaggaaccc
     5641 taggctatcg ctggcgatga cgcgtgtcca ccgatgacat gcccactctt cacaaatcaa
     5701 ggattacctg tgcataccac atacctgtgg cttcatttgg tggtttaaca cat
//
LOCUS       DUKB01000234            4297 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_337045, whole genome shotgun sequence.
ACCESSION   DUKB01000234 DUKB01000000
VERSION     DUKB01000234.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 4297)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 4297)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4297
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_337045"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            <1..335
                     /locus_tag="HA345_07655"
     CDS             <1..335
                     /locus_tag="HA345_07655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD synthase"
                     /protein_id="HIH85268.1"
                     /translation="DDTVRKRKHEPVTGSDLRCRLVAGLKPVDDAIVGNHPNTPMYDI
                     LNIVKPDVIALGYDQEHAEERIRKDLLEQGRTEIKVCRVSGLSDDLDGTRKIIARILE
                     MRTQKEAE"
     gene            335..952
                     /locus_tag="HA345_07660"
     CDS             335..952
                     /locus_tag="HA345_07660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007243396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase subunit alpha"
                     /protein_id="HIH85269.1"
                     /translation="MFTGIVEGMATLRSIKDNSDHIRWVVDLPAGVGAGLEIGASVAL
                     DGVCLTAVNIDGDVASFDLIQETLDRSTLGLRTPGDSLNIERALRYGDEVGGHLVSGH
                     VMGVGTVTSISHADDTADIRIDAPSHIESYIFEKGYIAIDGISLTVGEAKKNGGFNLH
                     IIPETLRRTTLGQKTSGSLVNIEIDAMTQAVVDTVKRVMDGGVSQ"
     gene            949..1344
                     /locus_tag="HA345_07665"
     CDS             949..1344
                     /locus_tag="HA345_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014187828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HIH85270.1"
                     /translation="MTSIALVCGSFHKSEVDEMIRHATAEAEEHNLEIMEIVWVPGSM
                     EAPLAAARLLENETIAGVACLGIIEKGETQHGLAMGQAVIKSLIDLQLGYDKPIGLGI
                     IGPGAEPHHIAPRLEPHARNAIAAIALML"
     gene            1354..1755
                     /locus_tag="HA345_07670"
     CDS             1354..1755
                     /locus_tag="HA345_07670"
                     /inference="COORDINATES: protein motif:HMM:NF019301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HIH85271.1"
                     /translation="MWNRIKVAAGAILGGWFIYIGIQHFTDPIWFEPIVPDILGWPRF
                     WVWVSGVAEIMVGLLLIIPRTRRIGGLACATLLVILYWANLNMWINNIAIGGRTYEHQ
                     WHVLRLLIQTALIGLSVFIWGGIGSDNHQQD"
     assembly_gap    1861..2158
                     /estimated_length=298
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <2159..3047
                     /gene="trxB"
                     /locus_tag="HA345_07675"
     CDS             <2159..3047
                     /gene="trxB"
                     /locus_tag="HA345_07675"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007910358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HIH85272.1"
                     /translation="AGYTAGLYGARAMLEPLMFAGYMSGGQLMLTSDIENFPGYPQGI
                     GGPEMMMQLREQAERFGLKVEDKNVERIDTSSQPYSVWVEGEEHKAHALIICTGAEAI
                     WLGVEGEEEQKGRGISTCATCDGAFFRDEEIIVIGGGDSAMEEATFLTRFASKVTLIH
                     RRDVFRASKVMQERAENHPKIEIRTFRQVKKWLSDEKGLSGAILEDPRDGSTEEIACT
                     GAFIAIGHKPITGFLEGQIDTDDSGYIIHKDHTMTSVSGVFAAGDVVDTRYRQAITAA
                     GMGCQAAIDCERWLEDNIH"
     gene            3133..3849
                     /locus_tag="HA345_07680"
     CDS             3133..3849
                     /locus_tag="HA345_07680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85273.1"
                     /translation="MQPDPEDDPFASAATDFQNAIDSFQTSLDNDKARAEPAPVMSQP
                     VQAAAPDPIPQTPGPTPTTFTGMPSQPVPGSIPGTAVPGSSIPGVASPTANPVMLAGQ
                     PQPAMGVPMGMQGVGGMMVPPTTNAVLALVLGILGWVGCGICTSLPGFLVAQSALTTA
                     RAYPGHPDTGMAQAAKWVSLINVILFGLLILFYVAMFVIFASSGELDFGTYECDNGNT
                     VPESFVNDGDNDCGDWSDED"
     gene            3868..>4297
                     /locus_tag="HA345_07685"
     CDS             3868..>4297
                     /locus_tag="HA345_07685"
                     /inference="COORDINATES: protein motif:HMM:NF013094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoeB"
                     /protein_id="HIH85274.1"
                     /translation="MVDKPWMNGRYARHRSLPDFGEMGQKALVDSTVICIGAGGLGSP
                     ALLYLAAAGIGKIRIVDNDTVDETNLQRQVIHSNAEIGEPKVDSAARRIQMLNPLVEC
                     EIHQTRMTTENALNLLKDVDVLIDGTDNLPTRYLIDDACAI"
BASE COUNT         1065 a          982 c         1032 g          920 t
ORIGIN      
        1 acgacgatac tgtgcggaaa agaaagcacg aacctgttac tggtagtgat ctacgatgca
       61 gattagtagc aggcctgaaa cctgtggatg atgcaatcgt tggaaatcat ccaaacacgc
      121 caatgtatga tattctcaat atcgtgaaac ctgatgttat tgctctaggc tacgatcaag
      181 aacacgctga agagagaatc cgtaaagatc tccttgagca agggcgcacg gaaatcaagg
      241 tatgcagagt cagtggccta tccgatgacc tcgatggtac tcgcaagatt attgctagaa
      301 ttctagaaat gcgaacacag aaggaggcgg aatgatgttc acaggtatcg tcgaaggcat
      361 ggcaacactc cggtctatca aagacaatag tgaccacata cgttgggtgg tcgatcttcc
      421 tgcaggggtt ggtgcagggc tcgaaatcgg cgccagtgtc gctctcgatg gtgtctgctt
      481 aacagcagtc aatattgatg gagatgtggc atcttttgat ttaatccaag agacactcga
      541 ccgttctact ctcggactac ggactccagg agactcgctg aatatcgaac gagccctacg
      601 ctacggagat gaagttggag gacaccttgt ctccggccac gtaatgggag ttggtaccgt
      661 cacctccata tcccatgcag atgatactgc tgatatcaga atcgatgcac catctcacat
      721 cgagagctac atctttgaga aaggatacat cgccatcgat gggatttcac tgaccgtcgg
      781 tgaagccaaa aagaatggtg gattcaacct tcatataatc cccgagactc ttcgtcgtac
      841 aactctagga cagaaaacct ccggttcatt ggtcaacatt gagattgatg ccatgaccca
      901 agctgttgtc gataccgtca agcgtgtgat ggatggaggc gtgtcacaat gacatccatc
      961 gcacttgtct gtggctcctt ccacaaatca gaggttgacg agatgattag gcacgcaacc
     1021 gcggaagccg aagaacacaa tctcgaaatt atggagatcg tatgggtccc tggatcgatg
     1081 gaggcacccc tggcagcagc acgtctcctt gagaacgaga caatcgctgg agtcgcctgc
     1141 ctaggcatta tcgagaaggg agagacacag catggacttg ccatgggtca agccgtaatc
     1201 aagagcctga tcgacctcca acttggatat gacaagccca ttggactagg catcataggc
     1261 ccgggagctg aaccacatca tatcgctccc cgcctcgagc ctcacgcgag gaatgctatc
     1321 gctgcgattg cactaatgct ctgaggagta gtcatgtgga atcggatcaa agtcgctgct
     1381 ggagctatcc tcggaggatg gttcatctac atcggaatac agcactttac tgatccaata
     1441 tggtttgaac caatagtccc tgatattctt ggctggccac ggttctgggt atgggttagc
     1501 ggtgtcgctg agattatggt cggcctcctc ctcatcattc caagaacacg ccgaatcgga
     1561 gggttggcct gcgctaccct tctggtcata ctctattggg ctaatctgaa catgtggatc
     1621 aacaatatcg caatcggtgg gcgcacatac gaacatcaat ggcatgttct ccggctccta
     1681 atccaaaccg ctctaatcgg tttatccgtg tttatctggg gagggatagg atctgataat
     1741 caccagcagg attgatggag cacctgccgt tcggacgacc ccatgagcgg cgaaaatatc
     1801 cacaatgtga tcatcattgg cagtggtcca gcgggctata ctgccggcca atatggagcc
     1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1921 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     2101 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnag
     2161 cgggctatac tgccggccta tatggagccc gagcgatgct tgaaccactc atgttcgccg
     2221 ggtatatgtc aggcggccaa ctcatgctaa caagcgatat cgaaaacttc ccagggtatc
     2281 cgcaaggaat tggggggccc gagatgatga tgcaattacg cgaacaagca gaacggttcg
     2341 gactcaaggt agaggacaag aacgtcgaac gcatcgacac atcttcccaa ccttacagcg
     2401 tctgggttga aggcgaggag cacaaggcac atgcactcat tatctgtaca ggtgctgaag
     2461 cgatttggct aggagtcgag ggggaagagg agcagaaagg acgtggcatc tcaacctgtg
     2521 caacatgcga tggagcattc ttccgtgacg aggaaatcat cgtcatcggc ggaggtgact
     2581 ccgccatgga ggaagctact ttcttgaccc gcttcgcaag caaggtcacc ctaatccatc
     2641 gacgtgatgt attccgcgcc tccaaggtga tgcaggagag agcggaaaat catcccaaga
     2701 ttgagatacg taccttccga caagtgaaga agtggctatc agatgagaaa gggctctccg
     2761 gtgcaattct ggaggatcct cgagatggga gtaccgagga gattgcctgc acaggagcct
     2821 tcatcgcaat cggccacaag ccaatcacag gattcctcga aggtcagatt gatactgatg
     2881 attcaggcta catcatccac aaagatcaca caatgaccag tgtttctggt gtcttcgctg
     2941 caggcgatgt agtagatacg agatataggc aggcgattac agccgcagga atgggatgcc
     3001 aagctgcaat tgattgtgaa cgatggctag aggacaatat ccactgaatt acttttcacg
     3061 acgaatatcg tgatagtcta ttgaaacgaa tttaacgaat cgttcattat gtgaactaaa
     3121 ctgcttaact tcatgcagcc tgaccctgaa gatgaccctt ttgccagtgc agcgactgat
     3181 tttcagaacg ctatcgactc ttttcagacg agtcttgaca acgataaagc aagggctgaa
     3241 cccgctcctg taatgagtca gcccgtgcaa gccgctgcac cagatccaat ccctcaaacc
     3301 cctggtccaa cacctaccac cttcacaggt atgccctcac agccagttcc aggaagtatc
     3361 ccaggtactg ccgttcctgg ttctagtatt cctggtgtag catcccctac agccaatcct
     3421 gtgatgcttg caggccaacc acaaccggcc atgggcgtcc caatgggaat gcaaggggtc
     3481 ggcgggatga tggtaccacc cacaacaaac gcagtgctag cactggtgct cgggattcta
     3541 ggctgggtag gttgcggaat ctgtacttca ctgccaggat tccttgtcgc tcaatccgct
     3601 ctgactaccg caagagctta tccaggtcat cctgacactg gaatggcaca agcagcaaag
     3661 tgggtatctc taatcaatgt catactgttt ggactcctca tcctattcta tgtcgcaatg
     3721 ttcgtcattt tcgctagttc tggggaattg gatttcggga cctacgagtg cgacaatggc
     3781 aacacggttc cagaaagttt cgtcaatgac ggggacaatg actgcggcga ctggtccgat
     3841 gaagactgat ttcttggaat gattgccatg gttgacaagc catggatgaa tggccgatat
     3901 gctagacaca ggtcactccc ggactttggt gaaatgggac agaaggccct tgtggatagt
     3961 actgtgatat gtatcggagc agggggcctt ggatcacccg ccctgttgta ccttgcagca
     4021 gcaggtatcg gcaaaatcag aattgtggat aacgacactg tggatgagac taatcttcaa
     4081 cgtcaagtaa tccattcgaa tgctgaaatc ggtgaaccaa aagtagattc agcagccagg
     4141 cgaattcaga tgctcaatcc cttagtggaa tgtgagattc atcaaacgcg aatgacgaca
     4201 gaaaacgccc tcaatctctt gaaggacgtt gacgtactta tcgatggaac agataacctt
     4261 cccactcgct acctaattga cgatgcttgc gccatag
//
LOCUS       DUKB01000235            5626 bp    DNA     linear   ENV 11-JUN-2020
DEFINITION  MAG TPA_asm: Candidatus Thalassarchaeaceae archaeon isolate UBA9041
            contig_229312, whole genome shotgun sequence.
ACCESSION   DUKB01000235 DUKB01000000
VERSION     DUKB01000235.1
DBLINK      BioProject: PRJNA593905
            BioSample: SAMN13193055
            Sequence Read Archive: ERR598942
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Candidatus Thalassarchaeaceae archaeon (marine metagenome)
  ORGANISM  Candidatus Thalassarchaeaceae archaeon
            Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia;
            Candidatus Poseidoniales; Candidatus Thalassarchaeaceae.
REFERENCE   1  (bases 1 to 5626)
  AUTHORS   Rinke,C., Chuvochina,M., Mussig,A.J., Chaumeil,P.-A., Waite,D.W.,
            Whitman,W.B., Parks,D.H. and Hugenholtz,P.
  TITLE     A rank-normalized archaeal taxonomy based on genome phylogeny
            resolves widespread incomplete and uneven classifications
  JOURNAL   bioRxiv, doi 10.1101/2020.03.01.972265 (2020)
REFERENCE   2  (bases 1 to 5626)
  AUTHORS   Rinke,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2020) Australian Centre for Ecogenomics, School
            of Chemistry and Molecular Biosciences, The University of
            Queensland, Cooper Road, Brisbane, QLD 4072, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC NGS Cell v. 4.4.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 0.51x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/16/2020 00:12:11
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,546
            CDSs (total)                      :: 1,521
            Genes (coding)                    :: 1,517
            CDSs (with protein)               :: 1,517
            Genes (RNA)                       :: 25
            tRNAs                             :: 25
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 3 of 4
            Pseudo Genes (internal stop)      :: 1 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5626
                     /organism="Candidatus Thalassarchaeaceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig_229312"
                     /isolate="UBA9041"
                     /isolation_source="marine"
                     /db_xref="taxon:2670411"
                     /environmental_sample
                     /metagenome_source="marine metagenome"
                     /note="metagenomic"
     gene            44..817
                     /locus_tag="HA345_07690"
     CDS             44..817
                     /locus_tag="HA345_07690"
                     /inference="COORDINATES: protein motif:HMM:NF025001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HIH85275.1"
                     /translation="MLATLNASSSQGGRKLLWQNSPITVDCGGISESWDCDAQGNCAS
                     GLGIDKSRVTITTRDVVLTPAMATQARHATAVDGLHLIVGDRNLIGLEEALASQLGRE
                     NRLSEALEPLKPHYDLILIDTAPSLSIVSINALAASDAVLIPVQTEYLALEGVALLTG
                     TFNEVRRLLNPRLGVDGVIMTMHAPTLLNTQVAGHLREVFGDLVIEPAIRRNIRLAES
                     PSQGVPIQFHAPQSHGGQDYAALATELEAIWFPGGLRDE"
     gene            810..1256
                     /locus_tag="HA345_07695"
     CDS             810..1256
                     /locus_tag="HA345_07695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85276.1"
                     /translation="MSDERRGLGRGLDDLMAQNEMDLPFLSAYGPASEVEDDISQAKA
                     PPEEIFDAVVRHLRSIGCEIESIEDGSLSVQGLTVYIGDDAIQLTFESKHRLPFVPSD
                     LASPGLREGKIDFDGCGAQVTIEAWGIEARRCLSRFIEHVTINDDG"
     gene            complement(1240..1815)
                     /locus_tag="HA345_07700"
     CDS             complement(1240..1815)
                     /locus_tag="HA345_07700"
                     /inference="COORDINATES: protein motif:HMM:NF022853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85277.1"
                     /translation="MRPLIPLAIVMILISAATVSAASEGGVNKSVDELSDTGLDNVDS
                     PSVFSQDGDFVISVSINESSDAVKIYATTQICVNSGLCYPPEQTEMITGDNVTWTTTV
                     SPMTDQTYVNWNIILENASENQTKIPETGFGWKVWSDCWNDGTDWGGEGYDGGESCND
                     SNSEDSSRAVPTVGIAAVISVFVMAAIIRHR"
     gene            complement(1876..2394)
                     /locus_tag="HA345_07705"
     CDS             complement(1876..2394)
                     /locus_tag="HA345_07705"
                     /inference="COORDINATES: protein motif:HMM:TIGR03684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85278.1"
                     /translation="MAKRRMRKRKPVRLKVVRRILDSLNENLGIEDDFSDVFLEIAEF
                     GELNLLLGDRVPLVMTIDRPDDLGDVGAVIFPTLRGLLRWNLEVKWCAVDRGAIPFLM
                     NGADCMAAGVQMVDPNIERGDLIWIRDEEHGKPIAMGWALLDAEEMNAAIKGKALRTI
                     HWIGDDLWEVES"
     gene            2423..3070
                     /locus_tag="HA345_07710"
     CDS             2423..3070
                     /locus_tag="HA345_07710"
                     /inference="COORDINATES: protein motif:HMM:NF013706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HIH85279.1"
                     /translation="MSRRTARPVMQFLVIIDMAMGWGVLRNYHAHAKEMGSDPPSIPL
                     FFLMPPASLLSFESGVGEMPHPNPSCTIHHEVEIVFRIGQNGRPDAMCVGLDLTNRTE
                     QEIAKRDGLPWSDAKAFPNSAPHGPWYPYKEGVFEVQLSVNGEMRQQGSSSMMIHSID
                     RILEALRERFNPQHGDLIFTGTPSGVWPIQQGDEIVAELHQDGRCISRLQLHIHA"
     gene            3143..3535
                     /locus_tag="HA345_07715"
     CDS             3143..3535
                     /locus_tag="HA345_07715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010875846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HIH85280.1"
                     /translation="MAQWHGISRRKPSGARLKRPNRYRGKRRTEISSEKQFAFIDADR
                     QTKVYRKRSGNTTVRVLKENMINVSDGSGKTQRVEMTNVVENGADPNYVRRNILTKGA
                     IVETNIGRVRITSRPGMDGVISGVVIDE"
     gene            3586..4026
                     /locus_tag="HA345_07720"
     CDS             3586..4026
                     /locus_tag="HA345_07720"
                     /inference="COORDINATES: protein motif:HMM:NF014032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HIH85281.1"
                     /translation="MSGDASRIRVWTGYFDARLSRSEGRRVSVANAVPKPDLDSIALA
                     ARSLGIRKMKREANQSHPKRPRAREGYLVMSAKDAHSAAGTNSKEELMAAIGSRLATT
                     HQEAKEKAEEERKRGPRKGDRAARSQRKTKRPQNKKNKRRQNRR"
     gene            complement(4028..>4489)
                     /locus_tag="HA345_07725"
     CDS             complement(4028..>4489)
                     /locus_tag="HA345_07725"
                     /inference="COORDINATES: protein motif:HMM:NF013247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HIH85282.1"
                     /translation="GNYAPGMMPSKMAKVEGYAEIIYLDAVEHKYIEEVGAANFFCVK
                     DNVIYTPDLTGTILPGITRASVMQIARDLGHEVREERVDVDMALDADEAFCAGTAAVI
                     SPIGSIEHGSKIAHYCNGEVGPVTRKLYDTLVDIQLKRADDRHGWIRILEL"
     assembly_gap    4490..4794
                     /estimated_length=305
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<4795..5370)
                     /locus_tag="HA345_07730"
     CDS             complement(<4795..5370)
                     /locus_tag="HA345_07730"
                     /inference="COORDINATES: protein motif:HMM:NF013247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid aminotransferase"
                     /protein_id="HIH85283.1"
                     /translation="MDFDWDSLTFSFTSTDTMYRNVVRAGEEWGEGELIPFGNIEISP
                     AAGVLNYGQGIFEGMKAQRADDGNIVLFRSDKNAARFAQGAKRLGMPPVPESLFLDAV
                     ESVVKSNHRWVPPTGRGALYIRPVLWGSGAILGVAPAPEFTFMVYVCPVGPYFKGGMT
                     PIKLKVSDEYHRAAPGGSGGVKAIGNYAPGMM"
BASE COUNT         1381 a         1288 c         1299 g         1353 t
ORIGIN      
        1 tgcgggtaat acatggatgt tttctaatgg gcaagtaaat gccatgttgg caacattaaa
       61 cgcttcatca agtcaaggcg gacgtaagtt gctttggcaa aattctccga taacggtaga
      121 ttgtggtggt atatctgaaa gctgggattg tgatgctcag gggaattgtg cttcaggatt
      181 aggtattgac aagtcacgag tcacaattac gacgagagat gttgtactta cacctgcgat
      241 ggcgacacaa gcacggcatg cgactgctgt ggatggccta catctgatag taggtgatag
      301 gaatctcatt ggattggagg aggctcttgc atcacaacta gggcgagaaa accgtcttag
      361 tgaggctctt gaaccactca agccacatta cgatctaatc ctaatcgata cagctccttc
      421 attgagtatc gtgtcaatca atgcgctggc ggcttcagac gccgtgttaa taccagtaca
      481 aacagagtat cttgctctgg aaggagttgc attgttgaca ggaactttca atgaagtgcg
      541 acgtttactc aatccacgtc ttggcgtgga tggcgtgatt atgactatgc atgcaccaac
      601 tctcctgaat acacaggttg cagggcatct cagagaggtc ttcggagatt tggtcataga
      661 gccggcgatt cgacgtaaca ttcgccttgc agaatccccg agtcaaggtg taccgattca
      721 gttccatgct ccacagagtc atggtggcca agattatgca gcattggcta ccgaactgga
      781 agcaatctgg tttccaggag gacttcgaga tgagtgatga gagacgtgga cttggtcgtg
      841 ggctagacga tctcatggcc cagaatgaga tggatctccc gtttctctct gcatatggtc
      901 ctgcatccga ggtggaagac gatatatcgc aagcaaaggc tcctcctgag gagattttcg
      961 atgcagtagt gcgtcacctc cgatcgattg gatgtgaaat agaatccatt gaggacggaa
     1021 gcctctcagt tcaaggatta acggtataca taggtgatga tgccatccaa cttacctttg
     1081 agagcaagca tcgtcttccg tttgtcccta gtgaccttgc atcaccggga ttaagagaag
     1141 gaaaaatcga ttttgatgga tgtggggctc aagtgacaat tgaagcttgg gggattgaag
     1201 caaggcgttg cctatctcga tttattgaac atgttacaat caacgatgac ggatgattgc
     1261 agccattacg aatactgaga ttactgctgc gataccaaca gtgggaacag ctcggctaga
     1321 atcttctgaa ttactatcgt tacaactttc accaccatcg taaccttcac cgccccaatc
     1381 agttccatca ttccaacaat cggaccagac cttccaaccg aatcctgtct caggaatttt
     1441 cgtttggttc tcggatgcgt tttcaagaat aatattccaa ttcacatagg tctgatcagt
     1501 cattggcgat acagtggtgg tccatgtgac attatctcca gttatcatct cagtttgttc
     1561 aggtgggtaa cagaggccag agttgacaca aatctgtgtg gttgcataaa ttttcactgc
     1621 gtccgaactt tcgttgatac ttacactgat tacgaaatcc ccatcttgac tgaagacaga
     1681 gggggaatcc acattgtcaa gtcctgtatc tgaaagttcg tcaactgatt tgtttacgcc
     1741 gccttctgat gcagcagaga cggtggctgc agagatgaga atcatgacta ttgcaagtgg
     1801 aatcagaggc ctcatgcata tgttgttcgt gtacttgacc tattcaacga tttgctattc
     1861 ctgatactat attgcttaac tctcaacttc ccacaagtca tcaccaatcc agtggattgt
     1921 tctgagagcc ttgcctttga tggcagcatt catttcctca gcatctaaca atgcccatcc
     1981 cattgcgatt ggtttaccat gttcctcgtc acgaatccag atcagatcgc ctcgttcgat
     2041 gtttgggtca accatctgta cgcctgccgc catacagtct gcaccattca tcagaaatgg
     2101 aattgcgcct ctatcgactg cgcaccactt aacctcaaga ttccaacgta agagtccacg
     2161 aagcgtagga aatatcactg ctccaacatc acctaaatca tctggtcgat caattgtcat
     2221 cacgagagga acacgatcac caagtaggag atttagttca ccgaattcag cgatttcaag
     2281 gaatacgtcg gagaagtcat cttcgatgcc tagattctca ttgagggaat caaggatgcg
     2341 tcgtacgacc ttcagtcgta ctggcttcct cttcctcatc ctccgctttg ccataccatc
     2401 tcctccttct gacgtccaat gaatgtcccg ccgcaccgca aggcctgtaa tgcagttcct
     2461 cgtaattatt gacatggcga tgggctgggg tgttctacgg aactatcatg cccatgctaa
     2521 ggagatgggt tcagatccac ctagtatccc cctcttcttt ctaatgcctc ctgcgagcct
     2581 tctctcattt gagagtggag tcggagaaat gcctcatcct aatccctcat gtactattca
     2641 tcatgaagta gagatagtat tcagaattgg ccaaaatgga cgtccggatg ccatgtgtgt
     2701 cggcttagat ttaacaaatc gaactgaaca agagatcgca aaacgtgatg gtttaccctg
     2761 gagtgatgcg aaagcgttcc cgaattcagc acctcacggt ccatggtacc cttacaaaga
     2821 gggtgtattc gaagtgcagt tatctgtcaa tggagaaatg cgtcaacagg gttcgagtag
     2881 tatgatgatt cacagtattg atcgcatact agaggctctt cgagagcgtt tcaatccgca
     2941 gcatggcgac cttattttca caggtactcc aagcggtgtc tggccgattc aacagggtga
     3001 tgaaattgta gctgaattac atcaggatgg gcgatgtatc agtcgtcttc aactacatat
     3061 ccacgcttaa tgagtaagtg atgttgcaac gcttctttga aataagggga gccagtcggc
     3121 cgattccgga ggcgatgaac tcatggcaca atggcacggt atctctcgac gtaagcccag
     3181 tggagctcgc cttaagcgtc caaaccgcta ccgtggcaag cgacgcactg agatttccag
     3241 cgagaagcaa tttgcattca tcgacgcaga tcgccagacc aaggtctatc gtaagcgtag
     3301 tggtaacacg acagtccgcg ttctgaagga gaacatgatc aacgtatccg atggttcggg
     3361 aaagactcag cgtgttgaga tgaccaatgt tgtcgagaac ggagcagacc cgaactatgt
     3421 tcgacgcaat atcctgacca agggcgcaat tgtcgagacc aatattggtc gtgtacgcat
     3481 tacgagccgc ccgggtatgg acggcgtaat cagtggcgtc gtaatcgacg aataagcgaa
     3541 gacctcatga tggtcgtcga actcattccg aacggagttg gttgaatgag tggcgacgca
     3601 tcgcggattc gggtatggac cggatacttc gatgctcggc tttcacggtc tgaaggtcgc
     3661 cgcgtcagtg tggcaaacgc ggttccaaaa ccggatctag attcaattgc tcttgccgca
     3721 cggtctcttg gtattcgtaa gatgaagcgt gaagcgaatc aatcgcatcc gaagcgtcca
     3781 cgtgcgagag aaggatacct agtcatgtcc gccaaggatg cacattctgc tgcagggacg
     3841 aatagtaagg aggagttgat ggccgctatc ggttcacgat tagctactac tcatcaagag
     3901 gcgaaggaga aggcagagga agaacgtaag cgtggtccaa gaaaaggaga tcgcgccgcc
     3961 cgttcccaga ggaagacaaa gagacctcaa aacaagaaga acaagcgccg gcagaatcgt
     4021 cgctgaatca taattcgaga attcgaatcc atccgtgtcg atcatctgct cgcttcaact
     4081 gaatatccac taaagtatcg tagagctttc tagtcacagg ccctacttct ccgttgcaat
     4141 aatgtgcaat tttgcttcca tgttcgatac tcccaatggg cgagattacg gctgcagtcc
     4201 cggcgcagaa tgcttcgtca gcgtctagag ccatatcgac atctacgcgt tcctcacgca
     4261 cttcatgccc tagatcacgg gcaatttgca ttacgcttgc tctggtaatt cctggcaaga
     4321 tggttccggt caagtctgga gtatagatga cattatcctt gacgcagaag aaattggcag
     4381 cacccacctc ctcgatatat ttgtgctcaa cagcgtcgag atagataatt tcagcataac
     4441 cttctacctt cgccattttc gacggcatca ttccaggagc gtagtttccn nnnnnnnnnn
     4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4561 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
     4741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnncatcat
     4801 tccaggagcg tagtttccga ttgcctttac tccccctgaa ccacctggag cagcacggtg
     4861 atattcatca gagaccttga gtttgattgg agtcatacct cccttgaagt aaggccccac
     4921 ggggcacacg tagaccatga aggtgaattc gggagcaggt gctacaccaa gaatagctcc
     4981 acttccccag agtacaggtc gaatgtagag tgcaccacgt ccagtggggg gtacccagcg
     5041 atgattcgat tttactacag attccacggc gtcgaggaac aaagattctg gaacaggggg
     5101 catgcctagg cgcttcgcgc cctgtgcgaa tcgagccgca ttcttgtctg atcggaagag
     5161 cacaatgttc ccatcgtctg ctcgctgagc cttcatcccc tcaaagatac cttggccata
     5221 attcaggaca cccgctgctg gagaaatctc aatgttacca aagggaatta actctccttc
     5281 accccattct tctcctgcac gaaccacatt tcgatacatt gtatcggtag aagtgaacga
     5341 aaaggtgagg ctgtcccaat caaagtccat catcacacct cctcaggcag caagcctgtt
     5401 atccaaggtg aggggcggtg tctatcaacg attccctgag ttactttcca tctgaatccg
     5461 ggtaggttca tcaccatcgg cgttcaacac gattcatggg cgatggagac atggtgtggc
     5521 aaggtcgcat ctgcatcatc gatgtatcat atcaagctca gagtgaagga ggcactgttc
     5581 tagtagctca tgccagggca gaagccggtc attcggtgac aatgtt
//
