technical/working/20120925_broad_phase2_consensus_indel_validation/LWK.chr20.4_samples_indel_validation_bi_consensus.20111114.indels.low_coverage.genotypes.vcf.gz technical/working/20120925_broad_phase2_consensus_indel_validation/LWK.chr20.4_samples_indel_validation_bi_consensus.20111114.indels.low_coverage.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr2.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr3.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr5.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr9.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr6.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr11.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr12.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr4.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr20.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr13.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr22.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr12.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr4.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr14.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr20.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr16.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr21.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr15.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr8.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr1.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr19.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr10.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chrY.phase1_samtools_si.20101123.snps.low_coverage.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chrMT.phase1_samtools_si.20101123.snps.low_coverage.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr5.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chrY.genome_strip_hq.20101123.svs.low_coverage.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr15.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chrX.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr9.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr13.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr2.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr3.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr19.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr7.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr18.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr17.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr10.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chrMT.phase1_samtools_si.20101123.snps.low_coverage.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr8.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.wgs.integrated_phase1_v3.20101123.snps_indels_sv.sites.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr22.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr6.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr7.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chrX.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr14.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chrY.phase1_samtools_si.20101123.snps.low_coverage.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.wgs.integrated_phase1_v3.20101123.snps_indels_sv.sites.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr16.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr1.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr18.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chrY.genome_strip_hq.20101123.svs.low_coverage.genotypes.vcf.gz.tbi phase1/analysis_results/integrated_call_sets/ALL.chr11.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz phase1/analysis_results/integrated_call_sets/ALL.chr17.integrated_phase1_v3.20101123.snps_indels_svs.genotypes.vcf.gz